BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,
Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005.
Query= gi|254780630|ref|YP_003065043.1| ribonuclease PH [Candidatus
Liberibacter asiaticus str. psy62]
(242 letters)
Database: nr
14,124,377 sequences; 4,842,793,630 total letters
Searching..................................................done
>gi|89093846|ref|ZP_01166792.1| Ribonuclease PH [Oceanospirillum sp. MED92]
gi|89081976|gb|EAR61202.1| Ribonuclease PH [Oceanospirillum sp. MED92]
Length = 256
Score = 195 bits (495), Expect = 4e-48, Method: Composition-based stats.
Identities = 120/239 (50%), Positives = 171/239 (71%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R SGR +QMRE+ +TR +K+AEGS LV+FG+T +L TAT+E VP ++R + GW+TA
Sbjct: 18 RPSGRDNDQMREVKITRNFTKHAEGSVLVEFGETKVLCTATVERGVPRFLRGSGQGWVTA 77
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
EYGMLPRST R REA G+QGGR+ EIQR+IGR+LR+ +DL+ LG I +DCDV+QA
Sbjct: 78 EYGMLPRSTTTRNAREAAKGKQGGRTVEIQRLIGRSLRAALDLNKLGENTITLDCDVLQA 137
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
DGGTRTA+ITGA+VAL D + ++ N +K +AA+S G+ G ++DLDY E
Sbjct: 138 DGGTRTASITGAFVALQDAINVLKQDKNGAMKGDPIKQAIAAVSVGIFEGEAVLDLDYAE 197
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
DS + D N +MT G +EVQG+AE A ++Q+ AML+LA+ I+++++LQ++ ++
Sbjct: 198 DSKAETDMNVIMTSKGGFIEVQGTAEGAPYTQEELNAMLDLARKGISEIVELQQEALAE 256
>gi|256752250|ref|ZP_05493114.1| ribonuclease PH [Thermoanaerobacter ethanolicus CCSD1]
gi|256748902|gb|EEU61942.1| ribonuclease PH [Thermoanaerobacter ethanolicus CCSD1]
Length = 261
Score = 195 bits (495), Expect = 4e-48, Method: Composition-based stats.
Identities = 121/241 (50%), Positives = 169/241 (70%), Gaps = 2/241 (0%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R+ GR+ N++R I +TR +K+AEGS L++ G+T ++ TA++E+KVP + + T GWIT+
Sbjct: 3 RIDGREFNELRPIKITRNFNKFAEGSVLIEMGNTKVICTASIEDKVPPFQKGTGKGWITS 62
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
EYGMLPR+T R RE GR GR+ EIQR+IGR+LRSVVDL LG + I IDCDVIQA
Sbjct: 63 EYGMLPRATETRNPREVTKGRPSGRTMEIQRLIGRSLRSVVDLEVLGEKTIWIDCDVIQA 122
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
DGGTRTA+ITG+++AL D L + + LKG VAA+S G++ G ++DL + E
Sbjct: 123 DGGTRTASITGSFIALADALNKLVEK--GDIPKIPLKGFVAAVSVGIVEGNELLDLSFQE 180
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
DS VD N VMTD G IVE+QG+ E F++ + +L+LA+ I +IK+QK+V+S+
Sbjct: 181 DSNALVDMNVVMTDKGEIVEIQGTGEGGPFTKQNLTDLLSLAEYGIEQIIKIQKEVLSDI 240
Query: 242 V 242
V
Sbjct: 241 V 241
>gi|167038078|ref|YP_001665656.1| ribonuclease PH [Thermoanaerobacter pseudethanolicus ATCC 33223]
gi|167039210|ref|YP_001662195.1| ribonuclease PH [Thermoanaerobacter sp. X514]
gi|300915534|ref|ZP_07132845.1| ribonuclease PH [Thermoanaerobacter sp. X561]
gi|307267211|ref|ZP_07548716.1| ribonuclease PH [Thermoanaerobacter wiegelii Rt8.B1]
gi|307723791|ref|YP_003903542.1| ribonuclease PH [Thermoanaerobacter sp. X513]
gi|320116486|ref|YP_004186645.1| ribonuclease PH [Thermoanaerobacter brockii subsp. finnii Ako-1]
gi|326390883|ref|ZP_08212434.1| ribonuclease PH [Thermoanaerobacter ethanolicus JW 200]
gi|226736946|sp|B0KBM5|RNPH_THEP3 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|226736947|sp|B0K3T4|RNPH_THEPX RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|166853450|gb|ABY91859.1| ribonuclease PH [Thermoanaerobacter sp. X514]
gi|166856912|gb|ABY95320.1| ribonuclease PH [Thermoanaerobacter pseudethanolicus ATCC 33223]
gi|300888432|gb|EFK83583.1| ribonuclease PH [Thermoanaerobacter sp. X561]
gi|306917760|gb|EFN48029.1| ribonuclease PH [Thermoanaerobacter wiegelii Rt8.B1]
gi|307580852|gb|ADN54251.1| ribonuclease PH [Thermoanaerobacter sp. X513]
gi|319929577|gb|ADV80262.1| ribonuclease PH [Thermoanaerobacter brockii subsp. finnii Ako-1]
gi|325993031|gb|EGD51472.1| ribonuclease PH [Thermoanaerobacter ethanolicus JW 200]
Length = 261
Score = 195 bits (495), Expect = 5e-48, Method: Composition-based stats.
Identities = 121/241 (50%), Positives = 169/241 (70%), Gaps = 2/241 (0%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R+ GR+ N++R I +TR +K+AEGS L++ G+T ++ TA++E+KVP + + T GWIT+
Sbjct: 3 RIDGREFNELRPIKITRNFNKFAEGSVLIEMGNTKVICTASIEDKVPPFQKGTGKGWITS 62
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
EYGMLPR+T R RE GR GR+ EIQR+IGR+LRSVVDL LG + I IDCDVIQA
Sbjct: 63 EYGMLPRATETRNPREVTKGRPSGRTMEIQRLIGRSLRSVVDLDVLGEKTIWIDCDVIQA 122
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
DGGTRTA+ITG+++AL D L + + LKG VAA+S G++ G ++DL + E
Sbjct: 123 DGGTRTASITGSFIALADALNKLVEK--GDIPKIPLKGFVAAVSVGIVEGNELLDLSFQE 180
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
DS VD N VMTD G IVE+QG+ E F++ + +L+LA+ I +IK+QK+V+S+
Sbjct: 181 DSNALVDMNVVMTDKGEIVEIQGTGEGGPFTKQNLTDLLSLAEYGIEQIIKIQKEVLSDI 240
Query: 242 V 242
V
Sbjct: 241 V 241
>gi|20807113|ref|NP_622284.1| RNase PH [Thermoanaerobacter tengcongensis MB4]
gi|22096086|sp|Q8RC30|RNPH_THETN RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|20515606|gb|AAM23888.1| RNase PH [Thermoanaerobacter tengcongensis MB4]
Length = 261
Score = 195 bits (494), Expect = 6e-48, Method: Composition-based stats.
Identities = 121/239 (50%), Positives = 168/239 (70%), Gaps = 2/239 (0%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R+ GR+ N++R I +TR +K+AEGS L++ G+T ++ TA++E+KVP + + T GWIT+
Sbjct: 3 RIDGREFNELRPIKITRNFNKFAEGSVLIEMGETKVICTASIEDKVPPFQKGTGKGWITS 62
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
EYGMLPR+T R RE GR GR+ EIQR+IGR+LR+VVDL ALG R I IDCDVIQA
Sbjct: 63 EYGMLPRATEVRNPREVTKGRPSGRTMEIQRLIGRSLRAVVDLEALGERTIWIDCDVIQA 122
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
DGGTRTA+ITG+++AL D L + + LK VAA+S G++ G ++DL + E
Sbjct: 123 DGGTRTASITGSFIALADALNKLVEK--GELQKIPLKSFVAAVSVGIVEGNKLLDLSFQE 180
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
D+ VD N VMTD G IVE+QG+ E FS+ +F +L+LA I +IK+QK+V+S+
Sbjct: 181 DANALVDMNVVMTDKGEIVEIQGTGEGGPFSRQNFEELLDLAAHGIEQIIKIQKEVLSD 239
>gi|289577832|ref|YP_003476459.1| ribonuclease PH [Thermoanaerobacter italicus Ab9]
gi|289527545|gb|ADD01897.1| ribonuclease PH [Thermoanaerobacter italicus Ab9]
Length = 261
Score = 194 bits (493), Expect = 8e-48, Method: Composition-based stats.
Identities = 121/241 (50%), Positives = 169/241 (70%), Gaps = 2/241 (0%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R+ GR+ N++R I +TR +K+AEGS L++ G+T ++ TA++E+KVP + + T GWIT+
Sbjct: 3 RIDGREFNELRPIKITRNFNKFAEGSVLIEMGETKVICTASIEDKVPPFQKGTGKGWITS 62
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
EYGMLPR+T R RE GR GR+ EIQR+IGR+LRSVVDL LG + I IDCDVIQA
Sbjct: 63 EYGMLPRATETRNPREVTKGRPSGRTMEIQRLIGRSLRSVVDLDVLGEKTIWIDCDVIQA 122
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
DGGTRTA+ITG+++AL D L + + LKG VAA+S G++ G ++DL + E
Sbjct: 123 DGGTRTASITGSFIALADALNKLVEK--GDISKIPLKGFVAAVSVGIVDGNKLLDLSFQE 180
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
DS VD N VMTD G IVE+QG+ E F++ + +L+LA+ I +IK+QK+V+S+
Sbjct: 181 DSNALVDMNVVMTDKGEIVEIQGTGEGGPFTKQNLSDLLSLAEYGIEQIIKIQKEVLSDI 240
Query: 242 V 242
V
Sbjct: 241 V 241
>gi|283458297|ref|YP_003362916.1| RNase PH [Rothia mucilaginosa DY-18]
gi|283134331|dbj|BAI65096.1| RNase PH [Rothia mucilaginosa DY-18]
Length = 243
Score = 193 bits (490), Expect = 2e-47, Method: Composition-based stats.
Identities = 111/238 (46%), Positives = 163/238 (68%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R GR N++R I++TR S+ AEGS L++FG+T +L TA+ E VP W++ GW+TA
Sbjct: 5 REDGRALNELRPITITRGWSRNAEGSALIEFGNTRVLCTASFTEGVPRWLKGEGKGWVTA 64
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
EY MLPR+T R RE++ GR GGR+ EI R+IGR+LR+V+++ LG I++DCDV+QA
Sbjct: 65 EYAMLPRATNTRSSRESLKGRVGGRTHEISRLIGRSLRAVINMDELGENTIVLDCDVLQA 124
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
DGGTRTA+ITGA+VAL D + ++ + L V+AIS G++ G P++DL Y E
Sbjct: 125 DGGTRTASITGAYVALADAISWAKEQKILPAKANPLIDSVSAISVGIIDGTPMLDLPYTE 184
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
D + D N V+T SG VEVQG+AE A F +D ++L+LA + A+L ++Q++ ++
Sbjct: 185 DVRAETDMNVVVTGSGKFVEVQGTAEGAPFDRDELNSLLDLALEGTAELAQIQREALA 242
>gi|251798434|ref|YP_003013165.1| ribonuclease PH [Paenibacillus sp. JDR-2]
gi|247546060|gb|ACT03079.1| ribonuclease PH [Paenibacillus sp. JDR-2]
Length = 245
Score = 193 bits (489), Expect = 2e-47, Method: Composition-based stats.
Identities = 112/240 (46%), Positives = 163/240 (67%), Gaps = 2/240 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR GRQ NQ+R +++T V+KYAEGS L++ G+T ++ TA++EE+VP +++ GWIT
Sbjct: 1 MRTDGRQPNQLRPVTITTGVNKYAEGSVLIEVGETKVICTASVEERVPPFMKGQGKGWIT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEY MLPR+T +R RE+ G+ GR+ EIQR+IGRALRS+VDL ALG R I +DCDVIQ
Sbjct: 61 AEYSMLPRATHSRNHRESAKGKLSGRTMEIQRLIGRALRSIVDLQALGERTITLDCDVIQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRT +ITGA+VAL + + + + + +A++S G++ ++DL+Y
Sbjct: 121 ADGGTRTTSITGAFVALCLAVNKLSKTTQFPK--YPITAFLASVSVGVIQERELLDLNYD 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
EDS VD N VMT G VE+QG+ E + FS++ +L LA+ I +LI+ Q++ +
Sbjct: 179 EDSKAKVDMNVVMTGEGKFVELQGTGEDSPFSREELNKLLELAEGGIEELIEKQREALGE 238
>gi|255326296|ref|ZP_05367382.1| tRNA nucleotidyltransferase [Rothia mucilaginosa ATCC 25296]
gi|255296750|gb|EET76081.1| tRNA nucleotidyltransferase [Rothia mucilaginosa ATCC 25296]
Length = 243
Score = 193 bits (489), Expect = 2e-47, Method: Composition-based stats.
Identities = 110/238 (46%), Positives = 162/238 (68%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R GR N++R I++TR S+ AEGS L++FG+T +L TA+ E VP W++ GW+TA
Sbjct: 5 REDGRALNELRPITITRGWSRNAEGSALIEFGNTRVLCTASFTEGVPRWLKGEGKGWVTA 64
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
EY MLPR+T R RE++ GR GGR+ EI R+IGR+LR+V+++ LG I++DCDV+QA
Sbjct: 65 EYAMLPRATNTRSSRESLKGRVGGRTHEISRLIGRSLRAVINMDELGENTIVLDCDVLQA 124
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
DGGTRTA+ITGA+VAL D + ++ + L V+AIS G++ G P++DL Y E
Sbjct: 125 DGGTRTASITGAYVALADAISWAKEQKILPAKANPLIDSVSAISVGIIDGTPMLDLPYTE 184
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
D + D N V+T SG VEVQG+AE F +D ++L+LA + A+L ++Q++ ++
Sbjct: 185 DVRAETDMNVVVTGSGKFVEVQGTAEGVPFDRDELNSLLDLALEGTAELAQIQREALA 242
>gi|170742381|ref|YP_001771036.1| ribonuclease PH [Methylobacterium sp. 4-46]
gi|226736918|sp|B0UP55|RNPH_METS4 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|168196655|gb|ACA18602.1| ribonuclease PH [Methylobacterium sp. 4-46]
Length = 237
Score = 193 bits (489), Expect = 2e-47, Method: Composition-based stats.
Identities = 134/239 (56%), Positives = 177/239 (74%), Gaps = 2/239 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR S R +++R+++L + V++YAEGSCLV FG+T +L TA+LEE+ P W+R + GW+T
Sbjct: 1 MRPSKRAPDELRKVTLEKGVARYAEGSCLVTFGETKVLCTASLEERGPPWLRGSGKGWVT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEY MLPR+T R +RE +G+ GR+QEIQR+IGR+LR+VV+L A+G RQI++DCDV+Q
Sbjct: 61 AEYAMLPRATHERNRREVTAGKPSGRTQEIQRLIGRSLRAVVNLPAIGERQIVVDCDVLQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+ITGAWVALH+C M ++ HVAAISCG+ G PI+DLDY
Sbjct: 121 ADGGTRTASITGAWVALHECFTWMR--GRSIISVDPMRDHVAAISCGIHKGIPILDLDYD 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
EDS D DANFV+T SG IVEVQG+AE A FS++ F +L LAK +A L+ LQK +
Sbjct: 179 EDSAADTDANFVITGSGGIVEVQGTAEIAPFSEEQFLGLLRLAKAGVAQLVALQKQAVG 237
>gi|297544117|ref|YP_003676419.1| ribonuclease PH [Thermoanaerobacter mathranii subsp. mathranii str.
A3]
gi|296841892|gb|ADH60408.1| ribonuclease PH [Thermoanaerobacter mathranii subsp. mathranii str.
A3]
Length = 259
Score = 193 bits (489), Expect = 2e-47, Method: Composition-based stats.
Identities = 119/237 (50%), Positives = 166/237 (70%), Gaps = 2/237 (0%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R+ GR+ N++R I +TR +K+AEGS L++ G+T ++ TA++E+KVP + + T GWIT+
Sbjct: 3 RIDGREFNELRPIKITRNFNKFAEGSVLIEMGETKVICTASIEDKVPPFQKGTGKGWITS 62
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
EYGMLPR+T R RE GR GR+ EIQR+IGR+LRSVVDL LG + I IDCDVIQA
Sbjct: 63 EYGMLPRATETRNPREVTKGRPSGRTMEIQRLIGRSLRSVVDLEVLGEKTIWIDCDVIQA 122
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
DGGTRTA+ITG+++AL D L + + LKG VAA+S G++ G ++DL + E
Sbjct: 123 DGGTRTASITGSFIALADALNKLVEK--GDIPKIPLKGFVAAVSVGIVDGNKLLDLSFQE 180
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
DS VD N VMTD G IVE+QG+ E F++ + +L+LA+ I +IK+QK+V+
Sbjct: 181 DSNALVDMNVVMTDKGEIVEIQGTGEGGPFTKQNLSDLLSLAEYGIEQIIKIQKEVL 237
>gi|300741332|ref|ZP_07071353.1| tRNA nucleotidyltransferase [Rothia dentocariosa M567]
gi|300380517|gb|EFJ77079.1| tRNA nucleotidyltransferase [Rothia dentocariosa M567]
Length = 245
Score = 192 bits (488), Expect = 3e-47, Method: Composition-based stats.
Identities = 117/239 (48%), Positives = 164/239 (68%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R GR N++R I++TR S AEGS LV+FGDT +L TA+ E VP W++ GW+TA
Sbjct: 6 RADGRTLNELRPITITRGWSNQAEGSALVEFGDTRVLCTASFTEGVPRWLKGEGKGWVTA 65
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
EY MLPR+TG R RE+V G+ GGR+ EI R+IGR+LR+++D++ALG I++DCDV+QA
Sbjct: 66 EYAMLPRATGTRSSRESVKGKIGGRTHEISRLIGRSLRAIIDMNALGENTIVLDCDVLQA 125
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
DGGTRTA+ITGA+VAL D + + + LK V+AIS G++ G P++DL Y E
Sbjct: 126 DGGTRTASITGAYVALADSIAWAQRNGLLSPSDKPLKDSVSAISVGIIDGTPMLDLPYTE 185
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
D + D N V+T SG VEVQG+AE A F +D A+L+LA + A+L ++Q++ +
Sbjct: 186 DVRAETDMNVVVTGSGKFVEVQGTAEGAPFDRDELNALLDLALEGTAELARIQRESLEE 244
>gi|222147322|ref|YP_002548279.1| ribonuclease PH [Agrobacterium vitis S4]
gi|254808101|sp|B9JZG3|RNPH_AGRVS RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|221734312|gb|ACM35275.1| ribonuclease PH [Agrobacterium vitis S4]
Length = 239
Score = 192 bits (488), Expect = 3e-47, Method: Composition-based stats.
Identities = 153/239 (64%), Positives = 190/239 (79%), Gaps = 1/239 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR SGR+ +QMR+IS R SK+AEGSCLVKFGDTH+L TA+LE++ P W+RNT GW+T
Sbjct: 1 MRPSGRKTDQMRKISFERNFSKHAEGSCLVKFGDTHVLCTASLEDRTPPWLRNTGKGWVT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPR+TG R+KREA SG+Q GR+QEIQR+IGR+LR+VVDL ALG RQI +DCDVIQ
Sbjct: 61 AEYGMLPRATGERIKREASSGKQSGRTQEIQRLIGRSLRAVVDLEALGERQISLDCDVIQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+ITGAW+ALHDCL + N ++ +VLK HVAAISCG+ P++DLDY
Sbjct: 121 ADGGTRTASITGAWIALHDCL-KWMESRNIIKVDRVLKDHVAAISCGIFAAQPVIDLDYL 179
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
EDS + DANFVMT +G IVE+QG+AE FSQ+ F +L LA+ IA+L+ LQK I+
Sbjct: 180 EDSAAETDANFVMTGTGGIVEIQGTAEGKPFSQEEFLTLLGLAQTGIAELVDLQKQAIA 238
>gi|159184261|ref|NP_353359.2| ribonuclease PH [Agrobacterium tumefaciens str. C58]
gi|21759397|sp|Q8UIG8|RNPH_AGRT5 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|159139588|gb|AAK86144.2| ribonuclease PH [Agrobacterium tumefaciens str. C58]
Length = 238
Score = 191 bits (485), Expect = 6e-47, Method: Composition-based stats.
Identities = 154/239 (64%), Positives = 191/239 (79%), Gaps = 1/239 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR SGR+ +QMR++S R SK+AEGSCLVKFGDTH+L TA+LEEK P W+RN+ GW+T
Sbjct: 1 MRPSGRKTDQMRKVSFERNFSKHAEGSCLVKFGDTHVLVTASLEEKTPPWLRNSGKGWVT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPRST R+KREA SG+QGGR+QEIQR+IGR+LR+VVDL ALG RQI IDCDVIQ
Sbjct: 61 AEYGMLPRSTNERMKREAASGKQGGRTQEIQRLIGRSLRAVVDLQALGERQISIDCDVIQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+ITGAW+ALHDCL + N ++ +VLK H+AAISCG+ P++DLDY
Sbjct: 121 ADGGTRTASITGAWIALHDCL-KWMETRNMIKVEKVLKDHIAAISCGIFAKQPVIDLDYL 179
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
EDS+ + DANFV+T SG IVEVQG+AE A FS++ F +L LAK ++L+ LQK I+
Sbjct: 180 EDSSAETDANFVITGSGGIVEVQGTAEGAPFSEEEFLTLLGLAKAGCSELVALQKQAIA 238
>gi|325291761|ref|YP_004277625.1| ribonuclease PH [Agrobacterium sp. H13-3]
gi|325059614|gb|ADY63305.1| ribonuclease PH [Agrobacterium sp. H13-3]
Length = 238
Score = 191 bits (484), Expect = 9e-47, Method: Composition-based stats.
Identities = 153/239 (64%), Positives = 191/239 (79%), Gaps = 1/239 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR SGR+ +QMR++S R SK+AEGSCLVKFGDTH+L TA+LEEK P W+RN+ GW+T
Sbjct: 1 MRPSGRKTDQMRKVSFERNFSKHAEGSCLVKFGDTHVLVTASLEEKTPPWLRNSGKGWVT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPRST R+KREA +G+QGGR+QEIQR+IGR+LR+VVDL ALG RQI IDCDVIQ
Sbjct: 61 AEYGMLPRSTHERMKREASAGKQGGRTQEIQRLIGRSLRAVVDLQALGERQISIDCDVIQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+ITGAW+ALHDCL + N ++ +VLK H+AAISCG+ P++DLDY
Sbjct: 121 ADGGTRTASITGAWIALHDCL-KWMETRNMIKVEKVLKDHIAAISCGIFAKQPVIDLDYL 179
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
EDS+ + DANFV+T SG IVEVQG+AE A FS++ F +L LAK ++L+ LQK I+
Sbjct: 180 EDSSAETDANFVITGSGGIVEVQGTAEGAPFSEEEFLTLLGLAKAGCSELVALQKQAIA 238
>gi|302560437|ref|ZP_07312779.1| ribonuclease PH [Streptomyces griseoflavus Tu4000]
gi|302478055|gb|EFL41148.1| ribonuclease PH [Streptomyces griseoflavus Tu4000]
Length = 245
Score = 191 bits (484), Expect = 9e-47, Method: Composition-based stats.
Identities = 118/237 (49%), Positives = 159/237 (67%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R+ GR +Q+R +S+ R SK+AEGS LV FGDT +L TA++ E VP W + + GW+TA
Sbjct: 3 RIDGRTPDQLRPVSIERGWSKHAEGSVLVSFGDTKVLCTASVTEGVPRWRKGSGEGWVTA 62
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
EY MLPR+T R RE+V GR GGR+ EI R+IGR+LR+V+D ALG +++DCDV+QA
Sbjct: 63 EYAMLPRATNTRGDRESVRGRIGGRTHEISRLIGRSLRAVIDYKALGENTVVLDCDVLQA 122
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
DGGTRTAAITGA+VAL D +Q +D + L G V+A+S G++ G P++DL Y E
Sbjct: 123 DGGTRTAAITGAYVALADAVQWAQDKKLVRAGRRPLTGTVSAVSVGIVGGVPLLDLRYEE 182
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
D D D N V T G VEVQG+AE F++D A+L+LA A+L Q+ +
Sbjct: 183 DVKADTDMNVVCTGDGRFVEVQGTAEAEPFARDELNALLDLAVTGCAELAAAQRKAL 239
>gi|311113412|ref|YP_003984634.1| tRNA nucleotidyltransferase [Rothia dentocariosa ATCC 17931]
gi|310944906|gb|ADP41200.1| tRNA nucleotidyltransferase [Rothia dentocariosa ATCC 17931]
Length = 245
Score = 191 bits (484), Expect = 1e-46, Method: Composition-based stats.
Identities = 117/239 (48%), Positives = 165/239 (69%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R GR N++R I++TR S AEGS LV+FGDT +L TA+ E VP W++ GW+TA
Sbjct: 6 RADGRALNELRPITITRGWSNQAEGSALVEFGDTRVLCTASFTEGVPRWLKGEGKGWVTA 65
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
EY MLPR+TG R RE+V G+ GGR+ EI R+IGR+LR+V+D++ALG I++DCDV+QA
Sbjct: 66 EYAMLPRATGTRSSRESVKGKIGGRTHEISRLIGRSLRAVIDMNALGENTIVLDCDVLQA 125
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
DGGTRTA+ITGA+VAL D + + ++ LK V+AIS G++ G P++DL Y E
Sbjct: 126 DGGTRTASITGAYVALADSIAWAQRNGLLSPSAKPLKDSVSAISVGIIDGTPMLDLPYTE 185
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
D + D N V+T SG VEVQG+AE A F ++ A+L+LA + A+L ++Q++ +
Sbjct: 186 DVRAETDMNVVVTGSGKFVEVQGTAEGAPFDRNELNALLDLALEGTAELARIQRESLEE 244
>gi|107104436|ref|ZP_01368354.1| hypothetical protein PaerPA_01005513 [Pseudomonas aeruginosa PACS2]
Length = 239
Score = 190 bits (483), Expect = 1e-46, Method: Composition-based stats.
Identities = 125/239 (52%), Positives = 164/239 (68%), Gaps = 2/239 (0%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R SGR +Q+R I +TR +K+AEGS LV+FGDT ++ T + E VP +++ GW+TA
Sbjct: 3 RPSGRAADQLRPIRITRHYTKHAEGSVLVEFGDTKVICTVSAESGVPRFLKGQGQGWLTA 62
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
EYGMLPRSTG R +REA G+QGGR+ EIQR+IGR+LR+ +DLS LG + IDCDVIQA
Sbjct: 63 EYGMLPRSTGERNQREASRGKQGGRTLEIQRLIGRSLRAALDLSKLGENTLYIDCDVIQA 122
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
DGGTRTA+ITGA VAL D L ++ LK VAA+S G+ G P++DLDY E
Sbjct: 123 DGGTRTASITGATVALIDALAVLKKR--GALKGNPLKQMVAAVSVGIYQGVPVLDLDYLE 180
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
DS + D N VMTD+G +EVQG+AE A F D AML LA+ + +L +LQ+ ++
Sbjct: 181 DSAAETDLNVVMTDAGGFIEVQGTAEGAPFRPDELNAMLELAQQGMQELFELQRAALAE 239
>gi|71278026|ref|YP_266880.1| ribonuclease PH [Colwellia psychrerythraea 34H]
gi|123634261|sp|Q48AN3|RNPH_COLP3 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|71143766|gb|AAZ24239.1| ribonuclease PH [Colwellia psychrerythraea 34H]
Length = 237
Score = 190 bits (483), Expect = 1e-46, Method: Composition-based stats.
Identities = 129/239 (53%), Positives = 166/239 (69%), Gaps = 2/239 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR SGR Q+R +++TR+ + +AEGS L++FGDT ++ TAT+E VP +++ GW+T
Sbjct: 1 MRPSGRTLGQIRPVTITRQFTTHAEGSVLIEFGDTKVICTATVEVGVPRFLKGQGKGWVT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPRST R++REA SG+Q GR+ EI R+I RALR+ VDL ALG I +DCDVIQ
Sbjct: 61 AEYGMLPRSTHTRMRREAASGKQSGRTLEISRLIARALRAAVDLKALGENTISVDCDVIQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTAAITGA VAL D L +M + LK +AA+S G+ G P+ DLDY
Sbjct: 121 ADGGTRTAAITGACVALVDALNYMRAKD--IIKTNPLKHMIAAVSVGIYKGEPVADLDYP 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
EDS D D N VMTD+G ++EVQG+AE FS + AML LAK+ I +L LQK +S
Sbjct: 179 EDSAADTDMNVVMTDTGKLIEVQGTAEEEPFSFEEMQAMLELAKNGINELFDLQKAALS 237
>gi|222084657|ref|YP_002543186.1| ribonuclease PH [Agrobacterium radiobacter K84]
gi|254808098|sp|B9J7T9|RNPH_AGRRK RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|221722105|gb|ACM25261.1| ribonuclease PH [Agrobacterium radiobacter K84]
Length = 238
Score = 190 bits (483), Expect = 1e-46, Method: Composition-based stats.
Identities = 152/239 (63%), Positives = 195/239 (81%), Gaps = 1/239 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR SGR+ +QMR++S R SK+AEGSCLVKFGDTH+L TA+LEEK P W+RN+ GW+T
Sbjct: 1 MRPSGRKTDQMRKVSFERNFSKHAEGSCLVKFGDTHVLCTASLEEKTPPWLRNSGKGWVT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPR+TG R+KREA SG+QGGR+QEIQR+IGR+LR+VVDL LG RQI IDCDVIQ
Sbjct: 61 AEYGMLPRATGERMKREAASGKQGGRTQEIQRLIGRSLRAVVDLKELGERQITIDCDVIQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+ITGAW+AL+DCL+ ME + ++ +VLK H+AAISCG+ P++DLDY
Sbjct: 121 ADGGTRTASITGAWIALYDCLKWMESRNM-IKVERVLKDHIAAISCGIFASQPVIDLDYL 179
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
EDS+ + DANFVMT G IVE+QG+AE FS++ F +++LAK+ IA+L++LQK I+
Sbjct: 180 EDSSAETDANFVMTGKGGIVEIQGTAEGTPFSEEEFTTLMHLAKNGIAELVELQKQAIA 238
>gi|330812597|ref|YP_004357059.1| ribonuclease PH [Pseudomonas brassicacearum subsp. brassicacearum
NFM421]
gi|327380705|gb|AEA72055.1| ribonuclease PH [Pseudomonas brassicacearum subsp. brassicacearum
NFM421]
Length = 240
Score = 190 bits (482), Expect = 2e-46, Method: Composition-based stats.
Identities = 121/239 (50%), Positives = 167/239 (69%), Gaps = 1/239 (0%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R SGR +Q+R I +TR +K+AEGS LV+FGDT ++ T ++E VP +++ GW+TA
Sbjct: 3 RPSGRAADQLRSIRITRNYTKHAEGSVLVEFGDTKVICTVSVENGVPRFLKGQGQGWLTA 62
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
EYGMLPR+TG R +REA G+QGGR+ EIQR+IGR+LR+ +D+S LG + +DCDVIQA
Sbjct: 63 EYGMLPRATGERNQREASRGKQGGRTLEIQRLIGRSLRAALDMSKLGDVTLYVDCDVIQA 122
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
DGGTRTA+ITGA VAL D L+ ++ + LK +AA+S GM G P++DLDY E
Sbjct: 123 DGGTRTASITGAMVALVDALKVIKKRG-GLKGGDPLKQMIAAVSVGMYQGEPVLDLDYLE 181
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
DS + D N VMT +G +EVQG+AE A F + AML LAK + ++ +LQK +++
Sbjct: 182 DSAAETDLNVVMTSAGGFIEVQGTAEGAPFQPEELNAMLELAKKGMNEIFELQKAALAD 240
>gi|303258091|ref|ZP_07344099.1| tRNA nucleotidyltransferase [Burkholderiales bacterium 1_1_47]
gi|330998696|ref|ZP_08322425.1| tRNA nucleotidyltransferase [Parasutterella excrementihominis YIT
11859]
gi|302859110|gb|EFL82193.1| tRNA nucleotidyltransferase [Burkholderiales bacterium 1_1_47]
gi|329576435|gb|EGG57947.1| tRNA nucleotidyltransferase [Parasutterella excrementihominis YIT
11859]
Length = 245
Score = 190 bits (482), Expect = 2e-46, Method: Composition-based stats.
Identities = 124/240 (51%), Positives = 167/240 (69%), Gaps = 2/240 (0%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R SGR+ +++R I +TR +KYAEGS L++ G T ++ TA++EEKVP W+++ GW+TA
Sbjct: 8 RPSGRKADELRPIKITRHYTKYAEGSVLIEVGGTKVICTASVEEKVPGWLKDQGKGWVTA 67
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
EYGMLPR+TG R REA G+Q GR+QEIQR+IGR+LR+VVD+ ALG R I IDCDV QA
Sbjct: 68 EYGMLPRATGTRTDREAAKGKQSGRTQEIQRLIGRSLRAVVDMEALGERMIKIDCDVTQA 127
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
DGGTR A+ITGA+VAL D + + + + LKG VAA+S G+ G P+ D DY E
Sbjct: 128 DGGTRCASITGAYVALADAVNWLIKNGSLEKS--PLKGQVAALSVGIYEGVPVADFDYDE 185
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
D D D N VMTD+G VE+QG+AE FS++ A+L LA+D + L Q+ ++ E
Sbjct: 186 DHLSDTDMNVVMTDAGKFVELQGTAEGEPFSREDLDALLKLAEDGLKQLFAAQRAALAEE 245
>gi|83595868|gb|ABC25230.1| ribonuclease PH [uncultured marine bacterium Ant4D3]
Length = 256
Score = 190 bits (481), Expect = 2e-46, Method: Composition-based stats.
Identities = 117/239 (48%), Positives = 166/239 (69%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R SGR +Q+R+I +TR +K+AEGS L++FGDT +L TAT+E VP ++R + GW+TA
Sbjct: 18 RPSGRATDQLRDIKITRGFTKHAEGSVLIEFGDTRVLCTATVERGVPRFLRGSGSGWVTA 77
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
EYGMLPR+T +R REA G+QGGR+ EIQR+IGR+LR+ ++L LG I +DCDV+QA
Sbjct: 78 EYGMLPRATHSRNGREAARGKQGGRTLEIQRLIGRSLRASLNLEKLGENTITLDCDVLQA 137
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
DGGTRTA+ITGA++A+ D + ++ N L+ +AAIS G+ P++DLDY E
Sbjct: 138 DGGTRTASITGAYIAMVDAINVLKKDKNGAMRGDPLRRQIAAISVGIYKDEPVLDLDYDE 197
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
DS + D N VMT G +EVQG+AE + ++QD AML LA+ I ++ LQ +++
Sbjct: 198 DSKAETDMNVVMTADGGFIEVQGTAEGSPYTQDQMMAMLALARKGITEIAALQTAALAD 256
>gi|152984751|ref|YP_001351426.1| ribonuclease PH [Pseudomonas aeruginosa PA7]
gi|166228301|sp|A6VEE1|RNPH_PSEA7 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|150959909|gb|ABR81934.1| ribonuclease PH [Pseudomonas aeruginosa PA7]
Length = 239
Score = 190 bits (481), Expect = 2e-46, Method: Composition-based stats.
Identities = 125/239 (52%), Positives = 163/239 (68%), Gaps = 2/239 (0%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R SGR +Q+R I +TR +K+AEGS LV+FGDT ++ T + E VP +++ GW+TA
Sbjct: 3 RPSGRAADQLRPIRITRHYTKHAEGSVLVEFGDTKVICTVSAESGVPRFLKGQGQGWLTA 62
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
EYGMLPRSTG R +REA G+QGGR+ EIQR+IGR+LR+ +DLS LG + IDCDVIQA
Sbjct: 63 EYGMLPRSTGERNQREASRGKQGGRTLEIQRLIGRSLRAALDLSKLGENTLYIDCDVIQA 122
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
DGGTRTA+ITGA VAL D L ++ LK VAA+S G+ G P++DLDY E
Sbjct: 123 DGGTRTASITGATVALIDALAVLKKR--GALKGNPLKQMVAAVSVGIYQGVPVLDLDYLE 180
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
DS + D N VMTDSG +EVQG+AE A F AML LA+ + +L +LQ+ ++
Sbjct: 181 DSAAETDLNVVMTDSGGFIEVQGTAEGAPFRPAELNAMLELAQQGMQELFELQRAALAE 239
>gi|15600527|ref|NP_254021.1| ribonuclease PH [Pseudomonas aeruginosa PAO1]
gi|116053481|ref|YP_793808.1| ribonuclease PH [Pseudomonas aeruginosa UCBPP-PA14]
gi|218894437|ref|YP_002443307.1| ribonuclease PH [Pseudomonas aeruginosa LESB58]
gi|254237972|ref|ZP_04931295.1| ribonuclease PH [Pseudomonas aeruginosa C3719]
gi|254243780|ref|ZP_04937102.1| ribonuclease PH [Pseudomonas aeruginosa 2192]
gi|296392194|ref|ZP_06881669.1| ribonuclease PH [Pseudomonas aeruginosa PAb1]
gi|313106761|ref|ZP_07792977.1| ribonuclease PH [Pseudomonas aeruginosa 39016]
gi|12230959|sp|P50597|RNPH_PSEAE RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|122256498|sp|Q02E28|RNPH_PSEAB RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|226736925|sp|B7V5M5|RNPH_PSEA8 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|46015434|pdb|1R6M|A Chain A, Crystal Structure Of The Trna Processing Enzyme Rnase Ph
From Pseudomonas Aeruginosa In Complex With Phosphate
gi|9951653|gb|AAG08719.1|AE004946_3 ribonuclease PH [Pseudomonas aeruginosa PAO1]
gi|115588702|gb|ABJ14717.1| ribonuclease PH [Pseudomonas aeruginosa UCBPP-PA14]
gi|126169903|gb|EAZ55414.1| ribonuclease PH [Pseudomonas aeruginosa C3719]
gi|126197158|gb|EAZ61221.1| ribonuclease PH [Pseudomonas aeruginosa 2192]
gi|218774666|emb|CAW30483.1| ribonuclease PH [Pseudomonas aeruginosa LESB58]
gi|310879479|gb|EFQ38073.1| ribonuclease PH [Pseudomonas aeruginosa 39016]
Length = 239
Score = 189 bits (479), Expect = 3e-46, Method: Composition-based stats.
Identities = 124/239 (51%), Positives = 163/239 (68%), Gaps = 2/239 (0%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R SGR +Q+R I +TR +K+AEGS LV+FGDT ++ T + E VP +++ GW+TA
Sbjct: 3 RPSGRAADQLRPIRITRHYTKHAEGSVLVEFGDTKVICTVSAESGVPRFLKGQGQGWLTA 62
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
EYGMLPRSTG R +REA G+QGGR+ EIQR+IGR+LR+ +DLS LG + IDCDVIQA
Sbjct: 63 EYGMLPRSTGERNQREASRGKQGGRTLEIQRLIGRSLRAALDLSKLGENTLYIDCDVIQA 122
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
DGGTRTA+ITGA VAL D L ++ LK VAA+S G+ G P++DLDY E
Sbjct: 123 DGGTRTASITGATVALIDALAVLKKR--GALKGNPLKQMVAAVSVGIYQGVPVLDLDYLE 180
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
DS + D N VMTD+G +EVQG+AE A F AML LA+ + +L +LQ+ ++
Sbjct: 181 DSAAETDLNVVMTDAGGFIEVQGTAEGAPFRPAELNAMLELAQQGMQELFELQRAALAE 239
>gi|77461768|ref|YP_351275.1| ribonuclease PH [Pseudomonas fluorescens Pf0-1]
gi|123602792|sp|Q3K4M0|RNPH_PSEPF RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|77385771|gb|ABA77284.1| ribonuclease PH [Pseudomonas fluorescens Pf0-1]
Length = 240
Score = 189 bits (479), Expect = 4e-46, Method: Composition-based stats.
Identities = 120/239 (50%), Positives = 166/239 (69%), Gaps = 1/239 (0%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R SGR +Q+R I +TR +K+AEGS LV+FGDT ++ T ++E VP +++ GW+TA
Sbjct: 3 RPSGRAADQLRSIRITRNYTKHAEGSVLVEFGDTKVICTVSVENGVPRFLKGQGQGWLTA 62
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
EYGMLPR+TG R +REA G+QGGR+ EIQR+IGR+LR+ +D+S LG + +DCDVIQA
Sbjct: 63 EYGMLPRATGERNQREASRGKQGGRTLEIQRLIGRSLRAALDMSKLGDLTLYVDCDVIQA 122
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
DGGTRTA+ITGA VAL D L+ ++ + LK + A+S GM G P++DLDY E
Sbjct: 123 DGGTRTASITGAMVALVDALKVIKKRG-GLKGGDPLKQMIGAVSVGMYQGEPVLDLDYLE 181
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
DS + D N VMT +G +EVQG+AE A F + AML LAK + ++ +LQK +++
Sbjct: 182 DSAAETDLNVVMTSTGGFIEVQGTAEGAPFQPEELNAMLELAKKGMNEIFELQKAALAD 240
>gi|227820597|ref|YP_002824567.1| ribonuclease PH [Sinorhizobium fredii NGR234]
gi|254808598|sp|C3MEJ1|RNPH_RHISN RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|227339596|gb|ACP23814.1| ribonuclease PH [Sinorhizobium fredii NGR234]
Length = 239
Score = 189 bits (479), Expect = 4e-46, Method: Composition-based stats.
Identities = 152/239 (63%), Positives = 193/239 (80%), Gaps = 1/239 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR SGR+ +QMR++S R SK+AEGSCLV+FGDTH+L TA+LE+KVP W+RN GWIT
Sbjct: 1 MRPSGRKTDQMRKVSFERNFSKHAEGSCLVRFGDTHVLCTASLEDKVPAWLRNGGKGWIT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPR+TG R++REA +G+Q GR+QEIQR+IGR+LR+VVDL ALG RQI IDCDVIQ
Sbjct: 61 AEYGMLPRATGERMRREASTGKQSGRTQEIQRLIGRSLRAVVDLPALGERQISIDCDVIQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+ITGAW+ALHDCL+ ME + ++ +VLK HVAAISCG+ +VDLDY
Sbjct: 121 ADGGTRTASITGAWIALHDCLKWMEARNM-IKVERVLKDHVAAISCGIFANQAVVDLDYL 179
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
EDS + DANFVMT SG +VE+QG+AE FS++ F +++ LAKD IA+L+ LQK ++
Sbjct: 180 EDSAAETDANFVMTGSGGLVEIQGTAEGKPFSEEEFASLMQLAKDGIAELVALQKQAVA 238
>gi|294679008|ref|YP_003579623.1| ribonuclease PH [Rhodobacter capsulatus SB 1003]
gi|294477828|gb|ADE87216.1| ribonuclease PH [Rhodobacter capsulatus SB 1003]
Length = 237
Score = 188 bits (478), Expect = 4e-46, Method: Composition-based stats.
Identities = 127/239 (53%), Positives = 171/239 (71%), Gaps = 2/239 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR SGR +R IS+ V+K+AEGS L+K GDTH+L TAT+E+K P +++ + GW+T
Sbjct: 1 MRPSGRNLADIRSISIETGVTKHAEGSVLIKMGDTHVLCTATIEDKAPSFLKGSGLGWVT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPR+T +R +REA +G+Q GR+QEIQR+IGRALR+ +D SALG RQI++DCDV+Q
Sbjct: 61 AEYGMLPRATNSRNRREAAAGKQSGRTQEIQRLIGRALRAGIDRSALGERQIVVDCDVLQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTR A+ITG WVAL + + +S + HVAAISCG+ G PI DLDY
Sbjct: 121 ADGGTRCASITGGWVALRLAVNKLLKS--GLIVSDPIIDHVAAISCGIYAGQPIADLDYA 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
EDS VD NF++T G +VEVQ +AE +TFS++ +L+LA+ +A L+ QK I+
Sbjct: 179 EDSEAGVDGNFILTGRGRLVEVQMTAEGSTFSREEMTKLLDLAEAGVAQLVAAQKAAIA 237
>gi|320010557|gb|ADW05407.1| ribonuclease PH [Streptomyces flavogriseus ATCC 33331]
Length = 245
Score = 188 bits (477), Expect = 5e-46, Method: Composition-based stats.
Identities = 119/241 (49%), Positives = 159/241 (65%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R+ GR Q+R +++ R SK+AEGS LV FGDT + TA++ E VP W + + GW+TA
Sbjct: 3 RIDGRTPEQLRPVTIERGWSKHAEGSVLVSFGDTKVFCTASVTEGVPRWRKGSGEGWVTA 62
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
EY MLPRST R RE+V G+ GGR+ EI R+IGR+LR+V+D ALG I++DCDV+QA
Sbjct: 63 EYSMLPRSTNTRGDRESVRGKIGGRTHEISRLIGRSLRAVIDYKALGENTIVLDCDVLQA 122
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
DGGTRTAAITGA+VAL D + + + L G VAAIS G++ G P++DL Y E
Sbjct: 123 DGGTRTAAITGAYVALADAIAWAQGKKIVKHGRKPLTGTVAAISVGIVDGTPLLDLCYEE 182
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
D + D N V T G VEVQG+AE F +D A+L+LA ADL KLQ++ ++
Sbjct: 183 DVRAETDMNVVCTGDGRFVEVQGTAEAEPFDRDELNALLDLATAGCADLAKLQEEALART 242
Query: 242 V 242
+
Sbjct: 243 L 243
>gi|86356020|ref|YP_467912.1| ribonuclease PH [Rhizobium etli CFN 42]
gi|123513255|sp|Q2KDA1|RNPH_RHIEC RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|86280122|gb|ABC89185.1| ribonuclease PH protein [Rhizobium etli CFN 42]
Length = 239
Score = 188 bits (477), Expect = 6e-46, Method: Composition-based stats.
Identities = 149/239 (62%), Positives = 193/239 (80%), Gaps = 1/239 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR SGR+ +QMR++S R SK+AEGSCLVKFGDTH+L TA+LEEK P W+RNT GW+T
Sbjct: 1 MRPSGRKTDQMRKVSFERNFSKHAEGSCLVKFGDTHVLCTASLEEKTPPWLRNTGKGWVT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPR+TG R+KREA +G+QGGR+QEIQR+IGR+LR+VVDL ALG +QI +DCDVIQ
Sbjct: 61 AEYGMLPRATGERMKREAAAGKQGGRTQEIQRLIGRSLRAVVDLQALGEKQITLDCDVIQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+ITG W+AL+DCL+ ME + ++ +VLK HVAAISCG+ ++DLDY
Sbjct: 121 ADGGTRTASITGGWIALYDCLKWMESRNM-IKVDRVLKDHVAAISCGVFANQAVIDLDYL 179
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
EDS+ + DANFVMT +G IVE+QG+AE FS++ F +++ LAK+ I +L+ LQK I+
Sbjct: 180 EDSSAETDANFVMTGAGGIVEIQGTAEGTPFSEEEFSSLMRLAKNGIGELVALQKQAIA 238
>gi|197333899|ref|YP_002154880.1| ribonuclease PH [Vibrio fischeri MJ11]
gi|226736949|sp|B5FFE2|RNPH_VIBFM RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|197315389|gb|ACH64836.1| ribonuclease PH [Vibrio fischeri MJ11]
Length = 238
Score = 188 bits (477), Expect = 6e-46, Method: Composition-based stats.
Identities = 129/240 (53%), Positives = 166/240 (69%), Gaps = 2/240 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR SGR Q+R I+LTR + +AEGS LV+FG+T ++ TA++EE VP W++ GW+T
Sbjct: 1 MRPSGRTAQQVRPITLTRNFTAHAEGSVLVEFGNTKVICTASVEENVPRWLKGKGKGWVT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPR+T R +REA SG+QGGR+ EIQR+I R+LR+ VDL ALG + I +DCDVIQ
Sbjct: 61 AEYGMLPRATHTRNRREAASGKQGGRTMEIQRLIARSLRAAVDLEALGEQMITVDCDVIQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+ITGA VAL D + HM S +KGHVAA+S G+ G I DL+Y
Sbjct: 121 ADGGTRTASITGASVALADAINHMIAT--GKLKSNPMKGHVAAVSVGIYNGEAICDLEYL 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
EDS D D N VM + G ++EVQG+AE A FS ML LA+ I D+I+ QK ++
Sbjct: 179 EDSAADTDMNVVMMEDGKMIEVQGTAEEAPFSHQELLDMLALAQQGINDIIEKQKAALAE 238
>gi|220924628|ref|YP_002499930.1| ribonuclease PH [Methylobacterium nodulans ORS 2060]
gi|254808593|sp|B8IFR7|RNPH_METNO RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|219949235|gb|ACL59627.1| ribonuclease PH [Methylobacterium nodulans ORS 2060]
Length = 237
Score = 188 bits (477), Expect = 6e-46, Method: Composition-based stats.
Identities = 135/239 (56%), Positives = 176/239 (73%), Gaps = 2/239 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR S R ++R+++L R V++YAEGSCLV FG+T +L TA+LEE+ P W+R + GWIT
Sbjct: 1 MRPSKRAPEELRKVTLERGVARYAEGSCLVTFGETRVLCTASLEERGPSWLRGSGKGWIT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEY MLPR+T R +RE +G+ GR+QEIQR+IGR+LR+VV+L A+G RQI+IDCDV+Q
Sbjct: 61 AEYAMLPRATHERNRREVNAGKPSGRTQEIQRLIGRSLRAVVNLPAIGERQIVIDCDVLQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+ITGAWVALH+C M S ++ HVAA+SCG+ G PI+DLDY
Sbjct: 121 ADGGTRTASITGAWVALHECFTWMRSRS--IISVDPMRDHVAAVSCGIHKGTPILDLDYA 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
EDS + DANFV+T SG IVEVQG+AE FS++ F +L LAK +A L+ LQK +
Sbjct: 179 EDSAAETDANFVITGSGGIVEVQGTAEVTPFSEEEFLGLLRLAKSGVAQLVALQKQAVG 237
>gi|289625446|ref|ZP_06458400.1| ribonuclease PH [Pseudomonas syringae pv. aesculi str. NCPPB3681]
gi|289646372|ref|ZP_06477715.1| ribonuclease PH [Pseudomonas syringae pv. aesculi str. 2250]
gi|298484821|ref|ZP_07002921.1| Ribonuclease PH [Pseudomonas savastanoi pv. savastanoi NCPPB 3335]
gi|298160675|gb|EFI01696.1| Ribonuclease PH [Pseudomonas savastanoi pv. savastanoi NCPPB 3335]
gi|330866527|gb|EGH01236.1| ribonuclease PH [Pseudomonas syringae pv. aesculi str. 0893_23]
Length = 240
Score = 188 bits (477), Expect = 6e-46, Method: Composition-based stats.
Identities = 121/239 (50%), Positives = 167/239 (69%), Gaps = 1/239 (0%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R SGR +Q+R I +TR +K+AEGS LV+FGDT ++ T ++E VP +++ GW+TA
Sbjct: 3 RPSGRAADQLRSIRITRNYTKHAEGSVLVEFGDTKVICTVSVENGVPRFLKGQGQGWLTA 62
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
EYGMLPR+TG R +REA G+QGGR+ EIQR+IGR+LR+ +D+S LG + +DCDVIQA
Sbjct: 63 EYGMLPRATGERNQREASRGKQGGRTLEIQRLIGRSLRAALDMSKLGDVTLYVDCDVIQA 122
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
DGGTRTA+ITGA VAL D L+ ++ + LK +AA+S GM G P++DLDY E
Sbjct: 123 DGGTRTASITGAMVALADALKVIKKRG-GLKGGDPLKQMIAAVSVGMYQGEPVLDLDYLE 181
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
DS + D N VMT +G +EVQG+AE A F + AML LA+ I +L +LQ+ +++
Sbjct: 182 DSAAETDLNVVMTSAGGFIEVQGTAEGAPFQPEELNAMLALAQKGITELFELQRAALAD 240
>gi|59710718|ref|YP_203494.1| ribonuclease PH [Vibrio fischeri ES114]
gi|75431903|sp|Q5E8P0|RNPH_VIBF1 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|59478819|gb|AAW84606.1| ribonuclease PH [Vibrio fischeri ES114]
Length = 238
Score = 188 bits (476), Expect = 7e-46, Method: Composition-based stats.
Identities = 129/240 (53%), Positives = 166/240 (69%), Gaps = 2/240 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR SGR Q+R I+LTR + +AEGS LV+FG+T ++ TA++EE VP W++ GW+T
Sbjct: 1 MRPSGRTAQQVRPITLTRNFTAHAEGSVLVEFGNTKVICTASVEENVPRWLKGKGKGWVT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPR+T R +REA SG+QGGR+ EIQR+I R+LR+ VDL ALG + I +DCDVIQ
Sbjct: 61 AEYGMLPRATHTRNRREAASGKQGGRTMEIQRLIARSLRAAVDLEALGEQMITVDCDVIQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+ITGA VAL D + HM S +KGHVAA+S G+ G I DL+Y
Sbjct: 121 ADGGTRTASITGASVALADAINHMIAT--GKLKSNPMKGHVAAVSVGIYNGEAICDLEYV 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
EDS D D N VM + G ++EVQG+AE A FS ML LA+ I D+I+ QK ++
Sbjct: 179 EDSAADTDMNVVMMEDGKMIEVQGTAEEAPFSHQELLDMLALAQQGINDIIEKQKAALAE 238
>gi|226311377|ref|YP_002771271.1| ribonuclease PH [Brevibacillus brevis NBRC 100599]
gi|254808581|sp|C0ZAF8|RNPH_BREBN RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|226094325|dbj|BAH42767.1| ribonuclease PH [Brevibacillus brevis NBRC 100599]
Length = 253
Score = 188 bits (476), Expect = 8e-46, Method: Composition-based stats.
Identities = 123/240 (51%), Positives = 166/240 (69%), Gaps = 2/240 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR+ GR +Q+R +++TR K+AEGSCL++ GDT ++ TATLEE+VP ++R GWIT
Sbjct: 1 MRVDGRAHDQLRPVTITRNYIKHAEGSCLIEVGDTKVICTATLEERVPPFMRGGGKGWIT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEY MLPR+T R RE+ G+ GGR+ EIQR+IGRALRSVV+L A+G R I +DCDVIQ
Sbjct: 61 AEYSMLPRATATRNARESSKGKVGGRTMEIQRLIGRALRSVVNLEAMGERTIWLDCDVIQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+ITGA+VA+ D +Q + D L +AA S G++ ++DL+Y
Sbjct: 121 ADGGTRTASITGAFVAMVDAMQKLVDSGTW--KQLPLNDFLAATSVGVVGEEAVLDLNYK 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
EDST VD N VMT G VE+QG+ E A FS + M++LAK I +LI QK+ +++
Sbjct: 179 EDSTAIVDMNVVMTGKGKFVELQGTGEDAPFSPEQLQEMISLAKVGIDNLIHSQKEALAD 238
>gi|237797786|ref|ZP_04586247.1| ribonuclease PH [Pseudomonas syringae pv. oryzae str. 1_6]
gi|331020636|gb|EGI00693.1| ribonuclease PH [Pseudomonas syringae pv. oryzae str. 1_6]
Length = 240
Score = 188 bits (476), Expect = 8e-46, Method: Composition-based stats.
Identities = 120/239 (50%), Positives = 166/239 (69%), Gaps = 1/239 (0%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R SGR +Q+R I +TR +K+AEGS LV+FGDT ++ T ++E VP +++ GW+TA
Sbjct: 3 RPSGRAADQLRSIRITRNYTKHAEGSVLVEFGDTKVICTVSVENGVPRFLKGQGQGWLTA 62
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
EYGMLPR+TG R +REA G+QGGR+ EIQR+IGR+LR+ +D+S LG + +DCDVIQA
Sbjct: 63 EYGMLPRATGERNQREASRGKQGGRTLEIQRLIGRSLRAALDMSKLGDVTLYVDCDVIQA 122
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
DGGTRTA+ITGA VAL D L+ ++ + LK +AA+S GM G P++DLDY E
Sbjct: 123 DGGTRTASITGAMVALADALKVIKKRG-GLKGGDPLKQMIAAVSVGMYQGEPVLDLDYLE 181
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
DS + D N VMT G +E+QG+AE A F + AML LAK + +L +LQ+ +++
Sbjct: 182 DSAAETDLNVVMTSEGGFIEIQGTAEGAPFQPEELNAMLALAKKGMNELFELQRAALAD 240
>gi|78042648|ref|YP_359184.1| ribonuclease PH [Carboxydothermus hydrogenoformans Z-2901]
gi|123577019|sp|Q3AFA0|RNPH_CARHZ RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|77994763|gb|ABB13662.1| ribonuclease PH [Carboxydothermus hydrogenoformans Z-2901]
Length = 254
Score = 188 bits (476), Expect = 8e-46, Method: Composition-based stats.
Identities = 127/240 (52%), Positives = 164/240 (68%), Gaps = 2/240 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR+ GR+++Q+R + +T K+AEGS L++ GDT ++ TAT+E+KVP + + GWIT
Sbjct: 1 MRIDGREKDQLRTVKITTNYIKHAEGSVLIEMGDTRVVCTATVEDKVPPFAKGEGKGWIT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPRST R REA GRQ GR+ EIQR+IGRALR VVDL ALG R + IDCDVIQ
Sbjct: 61 AEYGMLPRSTETRNVREATKGRQSGRTLEIQRLIGRALRGVVDLKALGERTLWIDCDVIQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTAAITG++VAL L + + LK VAA+S G++ G I+DL++
Sbjct: 121 ADGGTRTAAITGSFVALALALNKLVEE--GILPVIPLKDFVAAVSVGIVDGEEILDLNFE 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
EDS VD N VMT S VEVQG+ E ATFS + +L LA+ I +LI+LQK + +
Sbjct: 179 EDSKALVDMNVVMTGSNRFVEVQGTGEEATFSMEELQRLLTLAQKGIRELIELQKQALGD 238
>gi|260893784|ref|YP_003239881.1| ribonuclease PH [Ammonifex degensii KC4]
gi|260865925|gb|ACX53031.1| ribonuclease PH [Ammonifex degensii KC4]
Length = 258
Score = 188 bits (476), Expect = 8e-46, Method: Composition-based stats.
Identities = 117/239 (48%), Positives = 161/239 (67%), Gaps = 2/239 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MRL GR ++R + + SKYAEGSCL++ GDT +L TA++++KVP +++ T GW+T
Sbjct: 1 MRLDGRGTGELRPVKIIPGYSKYAEGSCLIEMGDTRVLCTASIDDKVPSFLKGTGKGWVT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPR+T +R RE GR GR+ EIQR+IGR+LR+ VDL ALG R II+DCDV+Q
Sbjct: 61 AEYGMLPRATESRNLREVTKGRPSGRTLEIQRLIGRSLRAAVDLEALGERTIIVDCDVLQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTAAITG +VAL L + + S +K VAA+S G + ++DL +
Sbjct: 121 ADGGTRTAAITGGFVALVYALDWLR--NEGAIESLPVKDLVAAVSVGKVKDAYLLDLTFA 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
EDS +VD N VMT G +VEVQG+AE F+++ ML+LA ++ LI Q++ +
Sbjct: 179 EDSMAEVDLNVVMTGKGELVEVQGTAEGKPFTREELNLMLDLAAQGVSVLIAKQREALG 237
>gi|330505631|ref|YP_004382500.1| ribonuclease PH [Pseudomonas mendocina NK-01]
gi|328919917|gb|AEB60748.1| ribonuclease PH [Pseudomonas mendocina NK-01]
Length = 239
Score = 188 bits (476), Expect = 8e-46, Method: Composition-based stats.
Identities = 122/237 (51%), Positives = 167/237 (70%), Gaps = 2/237 (0%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R SGR +Q+R I +TR +K+AEGS LV+FGDT ++ T ++E VP +++ GW+TA
Sbjct: 3 RPSGRAADQLRSIRITRNYTKHAEGSVLVEFGDTKVICTVSVESGVPRFLKGQGQGWLTA 62
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
EYGMLPRSTG R +REA G+QGGR+ EIQR+IGR+LR+ +D+S LG + +DCDVIQA
Sbjct: 63 EYGMLPRSTGERNQREASRGKQGGRTLEIQRLIGRSLRAALDMSKLGENTLYVDCDVIQA 122
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
DGGTRTA+ITGA VAL D L+ ++ + LK +AA+S G+ G P++DLDY E
Sbjct: 123 DGGTRTASITGAMVALIDALKVLKKR--GALKGEPLKQMIAAVSVGIYQGEPVLDLDYLE 180
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
DS + D N VMT++G +EVQG+AE A F D F AML LA+ + ++ +LQK +
Sbjct: 181 DSAAETDLNVVMTNAGGFIEVQGTAEGAPFQPDEFNAMLALAQKGMNEIFELQKAAL 237
>gi|15964129|ref|NP_384482.1| ribonuclease PH [Sinorhizobium meliloti 1021]
gi|307301274|ref|ZP_07581036.1| ribonuclease PH [Sinorhizobium meliloti BL225C]
gi|307317945|ref|ZP_07597382.1| ribonuclease PH [Sinorhizobium meliloti AK83]
gi|21759408|sp|Q92SK2|RNPH_RHIME RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|15073305|emb|CAC41813.1| Probable ribonuclease PH protein [Sinorhizobium meliloti 1021]
gi|306896347|gb|EFN27096.1| ribonuclease PH [Sinorhizobium meliloti AK83]
gi|306903730|gb|EFN34317.1| ribonuclease PH [Sinorhizobium meliloti BL225C]
Length = 239
Score = 188 bits (476), Expect = 8e-46, Method: Composition-based stats.
Identities = 153/239 (64%), Positives = 195/239 (81%), Gaps = 1/239 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR SGR+ +QMR++S R SK+AEGSCLV+FGDTH+L TA+LEEKVP W+RN GWIT
Sbjct: 1 MRPSGRKTDQMRKVSFERSFSKHAEGSCLVRFGDTHVLCTASLEEKVPAWLRNGGKGWIT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPR+TG R++REA +G+Q GR+QEIQR+IGR+LR+VVDL ALG RQI IDCDVIQ
Sbjct: 61 AEYGMLPRATGERMRREAATGKQSGRTQEIQRLIGRSLRAVVDLPALGERQISIDCDVIQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+ITGAW+ALHDCL+ ME + +L +VLK HVAAISCG+ P++DLDY
Sbjct: 121 ADGGTRTASITGAWIALHDCLKWMEARNM-VKLEKVLKDHVAAISCGIFANQPVIDLDYL 179
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
EDS + DANFVMT SG +VE+QG+AE FS++ F +++ LAK+ IA+L+++QK I+
Sbjct: 180 EDSAAETDANFVMTGSGGLVEIQGTAEGKPFSEEEFASLMLLAKNGIAELVEMQKQAIA 238
>gi|154254011|ref|YP_001414835.1| ribonuclease PH [Parvibaculum lavamentivorans DS-1]
gi|171769691|sp|A7HZ45|RNPH_PARL1 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|154157961|gb|ABS65178.1| ribonuclease PH [Parvibaculum lavamentivorans DS-1]
Length = 238
Score = 187 bits (475), Expect = 9e-46, Method: Composition-based stats.
Identities = 147/239 (61%), Positives = 184/239 (76%), Gaps = 2/239 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR SGRQ +MR +S V+K+AEGSCLV+FGDTH+L TA+LEE+VP +++ GW+T
Sbjct: 1 MRPSGRQPQEMRTVSFEPGVAKHAEGSCLVRFGDTHVLCTASLEERVPPFLKGGGQGWVT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPRST R++REA G+Q GR+QEIQR++GR+LRSVVDL ALG RQI +DCDV+Q
Sbjct: 61 AEYGMLPRSTHERMRREAAQGKQSGRTQEIQRLVGRSLRSVVDLKALGERQISVDCDVLQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+ITGAWVALH C++ M S + VLK HVAAISCG+ G P+VDLDY
Sbjct: 121 ADGGTRTASITGAWVALHQCIEWMRARSM--ISAPVLKDHVAAISCGIYQGVPVVDLDYA 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
EDST D DANFV+T G I E+QG+AE FS + F ++L LAK IADL++ QK+ +S
Sbjct: 179 EDSTADTDANFVITGKGGICEIQGTAEGEPFSDEEFLSLLALAKTSIADLVRRQKEAVS 237
>gi|21221351|ref|NP_627130.1| ribonuclease PH [Streptomyces coelicolor A3(2)]
gi|256787469|ref|ZP_05525900.1| ribonuclease PH [Streptomyces lividans TK24]
gi|289771366|ref|ZP_06530744.1| ribonuclease PH [Streptomyces lividans TK24]
gi|21759422|sp|Q9S2H7|RNPH_STRCO RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|5531353|emb|CAB50985.1| putative ribonuclease PH [Streptomyces coelicolor A3(2)]
gi|289701565|gb|EFD68994.1| ribonuclease PH [Streptomyces lividans TK24]
Length = 245
Score = 187 bits (475), Expect = 9e-46, Method: Composition-based stats.
Identities = 113/237 (47%), Positives = 155/237 (65%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R+ GR Q+R +++ R SK+AEGS LV FGDT +L A++ E VP W + + GW+TA
Sbjct: 3 RIDGRTPQQLRPVTIERGWSKHAEGSVLVSFGDTKVLCNASVTEGVPRWRKGSGEGWVTA 62
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
EY MLPR+T R RE+V GR GGR+ EI R+IGR+LR+V+D ALG +++DCDV+QA
Sbjct: 63 EYAMLPRATNTRGDRESVKGRIGGRTHEISRLIGRSLRAVIDYKALGENTVVLDCDVLQA 122
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
DGGTRTAAITGA+VAL D + + + L G V+A+S G++ G P++DL Y E
Sbjct: 123 DGGTRTAAITGAYVALADAVAWAQGRKLIKANRKPLTGTVSAVSVGIVDGTPLLDLRYEE 182
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
D D D N V T G VEVQG+AE F++D +L+LA +L +LQ+ +
Sbjct: 183 DVRADTDMNVVCTGDGRFVEVQGTAEAEPFARDELNTLLDLATAGCTELAELQRKAL 239
>gi|209547618|ref|YP_002279535.1| ribonuclease PH [Rhizobium leguminosarum bv. trifolii WSM2304]
gi|226736929|sp|B5ZMW8|RNPH_RHILW RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|209533374|gb|ACI53309.1| ribonuclease PH [Rhizobium leguminosarum bv. trifolii WSM2304]
Length = 239
Score = 187 bits (475), Expect = 9e-46, Method: Composition-based stats.
Identities = 150/239 (62%), Positives = 194/239 (81%), Gaps = 1/239 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR SGR+ +QMR++S R SK+AEGSCLVKFGDTH+L TA+LEEK P W+RN+ GW+T
Sbjct: 1 MRPSGRKIDQMRKVSFERNFSKHAEGSCLVKFGDTHVLCTASLEEKTPPWLRNSGKGWVT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPR+TG R+KREA +G+QGGR+QEIQR+IGR+LR+VVDL ALG RQI +DCDVIQ
Sbjct: 61 AEYGMLPRATGERMKREAAAGKQGGRTQEIQRLIGRSLRAVVDLQALGERQITLDCDVIQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+ITG W+AL+DCL+ ME + ++ +VLK HVAAISCG+ P++DLDY
Sbjct: 121 ADGGTRTASITGGWIALYDCLKWMESRNM-IKVDRVLKDHVAAISCGVFASQPVIDLDYL 179
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
EDS+ + DANFVMT +G IVE+QG+AE FS++ F +++ LAK+ I +L+ LQK I+
Sbjct: 180 EDSSAETDANFVMTGAGGIVEIQGTAEGTPFSEEEFTSLMGLAKNGIGELVALQKQAIA 238
>gi|328882703|emb|CCA55942.1| Ribonuclease PH [Streptomyces venezuelae ATCC 10712]
Length = 243
Score = 187 bits (475), Expect = 9e-46, Method: Composition-based stats.
Identities = 111/241 (46%), Positives = 154/241 (63%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R+ GR Q+R +++ R SK+AEGS L+ FGDT + TA++ E VP W + + GW+T
Sbjct: 3 RIDGRTPEQLRPVTIERGWSKHAEGSVLISFGDTKVFCTASVTEGVPRWRKGSGEGWVTG 62
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
EY MLPR+T R RE+V G+ GGR+ EI R+IGR+LR+V+D ALG I++DCDV+QA
Sbjct: 63 EYSMLPRATNTRGDRESVRGKIGGRTHEISRLIGRSLRAVIDYKALGENTIVLDCDVLQA 122
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
DGGTRTAAITGA+VAL D + + + L G V A+S G++ G P++DL Y E
Sbjct: 123 DGGTRTAAITGAYVALADAVAWAQTKKLVKAGRKPLTGTVGAVSVGIVDGVPLLDLCYEE 182
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
D D D N V T G VEVQG+AE F + A+L+LA A+L ++Q+ +
Sbjct: 183 DVRADTDMNVVCTGDGRFVEVQGTAEAEPFDRKELNALLDLASGGCAELAEIQRKALEGT 242
Query: 242 V 242
+
Sbjct: 243 L 243
>gi|46201192|ref|ZP_00055593.2| COG0689: RNase PH [Magnetospirillum magnetotacticum MS-1]
Length = 239
Score = 187 bits (475), Expect = 9e-46, Method: Composition-based stats.
Identities = 135/239 (56%), Positives = 170/239 (71%), Gaps = 2/239 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR SGR +Q+R + L VS++AEGSC+ KFGDTH+L TA++EEKVP ++RNT GW+T
Sbjct: 1 MRPSGRAPDQLRTVILETGVSRHAEGSCIAKFGDTHVLCTASVEEKVPPFLRNTGKGWVT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPRST R REA G+Q GR+ EIQR+IGR+LRSV DL A+G RQI IDCDV+Q
Sbjct: 61 AEYGMLPRSTHTRTDREAAKGKQSGRTHEIQRLIGRSLRSVTDLVAMGERQIKIDCDVLQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+ITGA+VALH Q + + L HVAAISCG+ G ++DLDY
Sbjct: 121 ADGGTRTASITGAFVALHLAFQRLVRLE--LLKAIPLTDHVAAISCGIYEGTAVLDLDYP 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
EDS DANFVMT +G IVE+QG+AE FS+ F + +LA+ I L++ QK +
Sbjct: 179 EDSNAQADANFVMTGNGGIVEIQGTAEERPFSRAQFLELTDLAEAGIRQLVEAQKKALG 237
>gi|186475433|ref|YP_001856903.1| ribonuclease PH [Burkholderia phymatum STM815]
gi|226736895|sp|B2JEI0|RNPH_BURP8 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|184191892|gb|ACC69857.1| ribonuclease PH [Burkholderia phymatum STM815]
Length = 246
Score = 187 bits (475), Expect = 9e-46, Method: Composition-based stats.
Identities = 125/240 (52%), Positives = 166/240 (69%), Gaps = 2/240 (0%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R SGR +Q+R++ +TR +K+AEGS LV+FGDT ++ TA++ E VP ++R+ GW+TA
Sbjct: 7 RPSGRTADQLRDVRITRHYTKHAEGSVLVEFGDTKVICTASIAESVPAFLRDRGQGWLTA 66
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
EYGMLPR+T R REA G+Q GR+QEIQR+IGRALRSV DL LG+R + IDCDVIQA
Sbjct: 67 EYGMLPRATHTRSDREAARGKQTGRTQEIQRLIGRALRSVFDLERLGARTLHIDCDVIQA 126
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
DGGTRTA+ITGA+VA D + + + +VAAIS G+ G P++DLDY E
Sbjct: 127 DGGTRTASITGAFVAARDAVAKLLATGRIETS--PITDYVAAISVGVFDGIPVLDLDYDE 184
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
DS D D N VMT G VE+QG+AE FS+D +L+LA+ IA LI QK+ + ++
Sbjct: 185 DSQCDTDMNVVMTGDGGFVEIQGTAEGVPFSRDEMNKLLDLAQAGIATLIAKQKEALESK 244
>gi|83942034|ref|ZP_00954496.1| ribonuclease PH [Sulfitobacter sp. EE-36]
gi|83953083|ref|ZP_00961805.1| ribonuclease PH [Sulfitobacter sp. NAS-14.1]
gi|83842051|gb|EAP81219.1| ribonuclease PH [Sulfitobacter sp. NAS-14.1]
gi|83847854|gb|EAP85729.1| ribonuclease PH [Sulfitobacter sp. EE-36]
Length = 237
Score = 187 bits (475), Expect = 1e-45, Method: Composition-based stats.
Identities = 124/237 (52%), Positives = 172/237 (72%), Gaps = 2/237 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR SGR+ +++R +S+ +K+AEGS L+K GDTH+L TAT+E++VP +I+ + GW+T
Sbjct: 1 MRPSGRKLDELRAVSIETGFTKHAEGSALIKMGDTHVLCTATIEDRVPPFIKGSGLGWVT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPR+T R++REA G+QGGR+ EIQR+IGRALR+ VD SALG RQI IDCDV+Q
Sbjct: 61 AEYGMLPRATNTRMRREAAMGKQGGRTVEIQRLIGRALRAGVDRSALGERQITIDCDVLQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTR A+ITG WVAL + + + V VAAISCG+ G P++DLDY
Sbjct: 121 ADGGTRCASITGGWVALKLAVNKLMKAGDVVSDPLV--DPVAAISCGIYAGQPVLDLDYP 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
EDS VD NF+MT +G ++E+Q SAE +T+S+D +++LA+ +A+L++ QK
Sbjct: 179 EDSEAGVDGNFIMTGTGKLIEIQMSAEGSTYSRDQMNQLMDLAEKGVAELVEKQKAA 235
>gi|239931006|ref|ZP_04687959.1| ribonuclease PH [Streptomyces ghanaensis ATCC 14672]
gi|291439379|ref|ZP_06578769.1| ribonuclease PH [Streptomyces ghanaensis ATCC 14672]
gi|291342274|gb|EFE69230.1| ribonuclease PH [Streptomyces ghanaensis ATCC 14672]
Length = 245
Score = 187 bits (475), Expect = 1e-45, Method: Composition-based stats.
Identities = 114/241 (47%), Positives = 155/241 (64%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R+ GR Q+R I++ R SK+AEGS LV FGDT +L TA++ E VP W + + GW+TA
Sbjct: 3 RIDGRTPEQLRPITIERGWSKHAEGSVLVSFGDTKVLCTASVTEGVPRWRKGSGEGWVTA 62
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
EY MLPR+T R RE+V GR GGR+ EI R++GR+LR+V+D ALG +++DCDV+QA
Sbjct: 63 EYAMLPRATHTRGDRESVKGRIGGRTHEISRLVGRSLRAVIDYKALGENTVVLDCDVLQA 122
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
DGGTRTAAITG++VAL D + + + L G V+A+S G++ G P++DL Y E
Sbjct: 123 DGGTRTAAITGSYVALADAISWAQGKKLIKAGRRPLTGSVSAVSVGIVGGVPLLDLCYEE 182
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
D D D N V T G VEVQG+AE F++ A+L+LA A L Q+ +
Sbjct: 183 DVKADTDMNVVCTGDGRFVEVQGTAEAEPFARAELDALLDLAVAGCARLADAQRAALGTV 242
Query: 242 V 242
V
Sbjct: 243 V 243
>gi|226942447|ref|YP_002797520.1| ribonuclease PH [Azotobacter vinelandii DJ]
gi|259494117|sp|C1DI48|RNPH_AZOVD RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|226717374|gb|ACO76545.1| ribonuclease PH [Azotobacter vinelandii DJ]
Length = 239
Score = 187 bits (475), Expect = 1e-45, Method: Composition-based stats.
Identities = 123/239 (51%), Positives = 164/239 (68%), Gaps = 2/239 (0%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R SGR +Q+R I +TR +++AEGS LV+FGDT ++ T + E VP +++ GW+TA
Sbjct: 3 RPSGRAPHQLRPIRITRNYTRHAEGSVLVEFGDTRVICTVSAEAGVPRFLKGQGKGWLTA 62
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
EYGMLPR+TG R+ REA GRQGGR+ EIQR+IGR+LR+ +D+S LG + +DCDVIQA
Sbjct: 63 EYGMLPRATGERMAREASRGRQGGRTLEIQRLIGRSLRAALDMSKLGENTLYVDCDVIQA 122
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
DGGTRTA+ITGA VAL D L ++ LK VAA+S G+ G PI+DLDY E
Sbjct: 123 DGGTRTASITGAMVALVDALAVLKKR--GALKGDPLKQMVAAVSVGIYQGEPILDLDYPE 180
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
DS + D N VMTD+G +EVQG+AE F + AML LA I +L +LQ+ V+++
Sbjct: 181 DSDAETDLNVVMTDAGGFIEVQGTAEGEPFQPEELNAMLALATQGIRELFELQRAVLAD 239
>gi|84684654|ref|ZP_01012555.1| ribonuclease PH [Maritimibacter alkaliphilus HTCC2654]
gi|84667633|gb|EAQ14102.1| ribonuclease PH [Rhodobacterales bacterium HTCC2654]
Length = 250
Score = 187 bits (475), Expect = 1e-45, Method: Composition-based stats.
Identities = 133/239 (55%), Positives = 176/239 (73%), Gaps = 2/239 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR SGR +++R IS+ V+K+AEGSCL+K GDTH+L TA+LEE+VP W+RNT GW+T
Sbjct: 14 MRPSGRNVDELRPISIETGVTKHAEGSCLIKVGDTHVLCTASLEERVPPWLRNTGMGWVT 73
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPRST +R++REA +G+QGGR+ EIQR+IGR+LR+ VD ALG RQI +DCDVIQ
Sbjct: 74 AEYGMLPRSTSSRMRREATAGKQGGRTVEIQRLIGRSLRAGVDRQALGERQITVDCDVIQ 133
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTR A+ITG WVAL +Q + +S L VAA+SCG+ G P++DLDY
Sbjct: 134 ADGGTRCASITGGWVALRLAVQKLMKA--GDIVSDPLIDPVAAVSCGIYAGQPVLDLDYP 191
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
EDS VD NFVMT +G ++EVQ SAE +TFS+ ++ LA+ +A+L+ QK ++
Sbjct: 192 EDSEAGVDGNFVMTGTGRLIEVQMSAEGSTFSRAQMDDLMGLAEKGVAELVAAQKAAVA 250
>gi|146309400|ref|YP_001189865.1| ribonuclease PH [Pseudomonas mendocina ymp]
gi|166228302|sp|A4Y0L7|RNPH_PSEMY RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|145577601|gb|ABP87133.1| RNAse PH [Pseudomonas mendocina ymp]
Length = 239
Score = 187 bits (475), Expect = 1e-45, Method: Composition-based stats.
Identities = 120/237 (50%), Positives = 167/237 (70%), Gaps = 2/237 (0%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R SGR +Q+R I +TR +K+AEGS LV+FGDT ++ T ++E VP +++ GW+TA
Sbjct: 3 RPSGRAADQLRSIRITRNYTKHAEGSVLVEFGDTKVICTVSVESGVPRFLKGQGQGWLTA 62
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
EYGMLPR+TG R +REA G+QGGR+ EIQR+IGR+LR+ +D+S LG + +DCDVIQA
Sbjct: 63 EYGMLPRATGERNQREASRGKQGGRTLEIQRLIGRSLRAALDMSKLGENTLYVDCDVIQA 122
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
DGGTRTA+ITGA VAL D L+ ++ + LK +AA+S G+ G P++DLDY E
Sbjct: 123 DGGTRTASITGAMVALIDALKVLKKR--GSLKGEPLKQMIAAVSVGIYQGEPVLDLDYLE 180
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
DS + D N VMT++G +EVQG+AE A F + F AML LA+ + ++ +LQK +
Sbjct: 181 DSAAETDLNVVMTNAGGFIEVQGTAEGAPFQPEEFNAMLALAQKGMNEIFELQKAAL 237
>gi|93006978|ref|YP_581415.1| ribonuclease PH [Psychrobacter cryohalolentis K5]
gi|122414849|sp|Q1Q8S2|RNPH_PSYCK RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|92394656|gb|ABE75931.1| RNAse PH [Psychrobacter cryohalolentis K5]
Length = 238
Score = 187 bits (474), Expect = 1e-45, Method: Composition-based stats.
Identities = 120/239 (50%), Positives = 162/239 (67%), Gaps = 2/239 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR+ R+ NQ+R IS R +K+AEGS LV FGDT +L TA++E VP W++ GWIT
Sbjct: 1 MRIDNRELNQLRSISFERHYTKHAEGSVLVSFGDTKVLCTASVESGVPRWLKGKGKGWIT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPR+T R +REA G+Q GR+QEIQR+IGR+LR+++DLS LG I +DCDV+Q
Sbjct: 61 AEYGMLPRATNTRNQREAARGKQSGRTQEIQRLIGRSLRAMIDLSKLGENTIYLDCDVLQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA++TGA +AL D L+ ++ + G VAA+S GM G +DL+Y
Sbjct: 121 ADGGTRTASVTGAAIALIDALESIQKTKKLKADPLI--GLVAAVSVGMKDGKAYLDLNYE 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
ED++ D D N VMT G +E+QG+AE F++ ML LA+ IA+LI +QK +
Sbjct: 179 EDASCDTDLNVVMTQKGEFIELQGTAEEKPFTRAQADDMLILAEKGIAELIAMQKTALG 237
>gi|307329928|ref|ZP_07609081.1| ribonuclease PH [Streptomyces violaceusniger Tu 4113]
gi|306884419|gb|EFN15452.1| ribonuclease PH [Streptomyces violaceusniger Tu 4113]
Length = 243
Score = 187 bits (474), Expect = 1e-45, Method: Composition-based stats.
Identities = 113/238 (47%), Positives = 155/238 (65%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R+ GR +Q+R +++ R SK+AEGS LV FGDT +L TA++ E VP W + + GW+TA
Sbjct: 3 RIDGRTPDQLRPVTIERGWSKHAEGSVLVSFGDTRVLCTASVTEGVPRWRKGSGEGWVTA 62
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
EY MLPRST R RE+V G+ GGR+ EI R+IGR+LR+V+D ALG I++DCDV+QA
Sbjct: 63 EYAMLPRSTNTRGDRESVRGKIGGRTHEISRLIGRSLRAVIDYKALGENTIVLDCDVLQA 122
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
DGGTRTAAITGA+VAL D + Q L G V+A+S G++ G P++DL Y E
Sbjct: 123 DGGTRTAAITGAYVALADAIGWARGKKLIKATRQPLTGTVSAVSVGIVGGIPLLDLCYEE 182
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
D + D N V T G VEVQG+AE F+++ +L+LA L +Q+ ++
Sbjct: 183 DVRAETDMNVVCTGDGRFVEVQGTAEGEPFAREELNGLLDLAVAGCETLAGIQRAALA 240
>gi|291278861|ref|YP_003495696.1| tRNA nucleotidyltransferase [Deferribacter desulfuricans SSM1]
gi|290753563|dbj|BAI79940.1| tRNA nucleotidyltransferase [Deferribacter desulfuricans SSM1]
Length = 238
Score = 187 bits (474), Expect = 1e-45, Method: Composition-based stats.
Identities = 116/239 (48%), Positives = 160/239 (66%), Gaps = 2/239 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR GR+ ++MR I +T KY EGS L++FG+T ++ A++ E VP +++ T GWIT
Sbjct: 1 MRSDGRKNDEMRLIKITTDYIKYPEGSVLIEFGETKVICNASITEGVPPFLKGTGTGWIT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEY MLPR+T R RE+V G+ GR+QEI R+IGRALRSVVD+S LG R ++IDCDVIQ
Sbjct: 61 AEYSMLPRATHTRNVRESVKGKLSGRTQEISRLIGRALRSVVDMSVLGERTVVIDCDVIQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+I+G +VAL+ + + +K VAA+S G+L I+DL+Y
Sbjct: 121 ADGGTRTASISGGFVALYSAFEKLVKS--GELEKNPIKNFVAAVSVGVLNDDVILDLNYE 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
EDST VD N V TDSG I+E+QG+ E + FS+D M++ A I ++I+ QK +
Sbjct: 179 EDSTARVDMNVVATDSGEIIEIQGTGEESPFSRDVLNKMIDYAFIGINNIIEAQKKALG 237
>gi|71066420|ref|YP_265147.1| ribonuclease PH [Psychrobacter arcticus 273-4]
gi|123647900|sp|Q4FQJ5|RNPH_PSYA2 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|71039405|gb|AAZ19713.1| RNAse PH [Psychrobacter arcticus 273-4]
Length = 238
Score = 187 bits (474), Expect = 1e-45, Method: Composition-based stats.
Identities = 120/239 (50%), Positives = 162/239 (67%), Gaps = 2/239 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR+ R+ NQ+R IS R +K+AEGS LV FGDT +L TA++E VP W++ GWIT
Sbjct: 1 MRIDNRELNQLRSISFERHYTKHAEGSVLVSFGDTKVLCTASVESGVPRWLKGKGKGWIT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPR+T R +REA G+Q GR+QEIQR+IGR+LR+++DLS LG I +DCDV+Q
Sbjct: 61 AEYGMLPRATNTRNQREAARGKQSGRTQEIQRLIGRSLRAMIDLSKLGENTIYLDCDVLQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA++TGA +AL D L+ ++ + G VAA+S GM G +DL+Y
Sbjct: 121 ADGGTRTASVTGAAIALIDALESIQKTKKLKADPLI--GLVAAVSVGMKDGEAYLDLNYE 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
ED++ D D N VMT G +E+QG+AE F++ ML LA+ IA+LI +QK +
Sbjct: 179 EDASCDTDLNVVMTQKGEFIELQGTAEEKPFTRAQADDMLVLAEKGIAELIAMQKTALG 237
>gi|150395238|ref|YP_001325705.1| ribonuclease PH [Sinorhizobium medicae WSM419]
gi|166228322|sp|A6U5E0|RNPH_SINMW RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|150026753|gb|ABR58870.1| ribonuclease PH [Sinorhizobium medicae WSM419]
Length = 239
Score = 187 bits (474), Expect = 1e-45, Method: Composition-based stats.
Identities = 152/239 (63%), Positives = 195/239 (81%), Gaps = 1/239 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR SGR+ +QMR++S R SK+AEGSCLV+FGDTH+L TA+LE+KVP W+RN GW+T
Sbjct: 1 MRPSGRKTDQMRKVSFERNFSKHAEGSCLVRFGDTHVLCTASLEDKVPGWLRNGGKGWVT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPR+TG R++REA +G+Q GR+QEIQR+IGR+LR+VVDL ALG RQI +DCDVIQ
Sbjct: 61 AEYGMLPRATGERMRREASAGKQSGRTQEIQRLIGRSLRAVVDLPALGERQISVDCDVIQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+ITGAW+ALHDCL+ ME + +L +VLK HVAAISCG+ P+VDLDY
Sbjct: 121 ADGGTRTASITGAWIALHDCLKWMEARNM-VKLEKVLKDHVAAISCGIFASQPVVDLDYL 179
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
EDS + DANFVMT SG +VE+QG+AE FS++ F +++ LAK+ IA+LI++QK I+
Sbjct: 180 EDSAAETDANFVMTGSGGLVEIQGTAEGKPFSEEEFASLMLLAKNGIAELIEMQKLAIA 238
>gi|146280858|ref|YP_001171011.1| ribonuclease PH [Pseudomonas stutzeri A1501]
gi|166228304|sp|A4VGR8|RNPH_PSEU5 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|145569063|gb|ABP78169.1| ribonuclease PH [Pseudomonas stutzeri A1501]
gi|327479126|gb|AEA82436.1| ribonuclease PH [Pseudomonas stutzeri DSM 4166]
Length = 240
Score = 187 bits (474), Expect = 1e-45, Method: Composition-based stats.
Identities = 122/239 (51%), Positives = 168/239 (70%), Gaps = 1/239 (0%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R SGR +Q+R I +TR +K+AEGS LV+FGDT ++ TA++E VP +++ GW+TA
Sbjct: 3 RPSGRAADQLRSIRITRNYTKHAEGSVLVEFGDTKVICTASIETGVPRFLKGQGQGWLTA 62
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
EYGMLPR+TG R +REA G+QGGR+ EIQR+IGR+LR+ +D+S LG + IDCDVIQA
Sbjct: 63 EYGMLPRATGERNQREAARGKQGGRTLEIQRLIGRSLRAALDMSKLGENTLYIDCDVIQA 122
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
DGGTRTA+ITGA VA+ D L+ ++ + +K +AA+S G+ G P++DLDY E
Sbjct: 123 DGGTRTASITGAMVAVIDALKVLKKRG-GLKGGDPVKQMIAAVSVGIYQGEPVLDLDYLE 181
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
DS + D N VMTD+G +EVQG+AE A F D AML LA D + L +LQ+ +++
Sbjct: 182 DSAAETDLNVVMTDAGGFIEVQGTAEGAPFHADELNAMLALAHDGVRQLFELQRAALAD 240
>gi|254502638|ref|ZP_05114789.1| ribonuclease PH [Labrenzia alexandrii DFL-11]
gi|222438709|gb|EEE45388.1| ribonuclease PH [Labrenzia alexandrii DFL-11]
Length = 272
Score = 187 bits (474), Expect = 1e-45, Method: Composition-based stats.
Identities = 147/238 (61%), Positives = 183/238 (76%), Gaps = 2/238 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR S R +++R ++L R VSK+AEGSCLVKFGDTH+L TA+LEE+VP W+R GW+T
Sbjct: 36 MRPSKRAADELRAVTLERGVSKHAEGSCLVKFGDTHVLCTASLEERVPPWLRGQNKGWVT 95
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPR+TG+R++REA +G+Q GR+QEIQR+IGR+LR+VVDL ALG QI +DCDVIQ
Sbjct: 96 AEYGMLPRATGSRMRREASAGKQSGRTQEIQRLIGRSLRAVVDLQALGEVQISVDCDVIQ 155
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTAAITGAWVAL DC++ M+ VL H+AAISCG+ P++DLDY
Sbjct: 156 ADGGTRTAAITGAWVALRDCVEWMKARDM--VSGDVLTDHIAAISCGIYESTPVLDLDYD 213
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
EDST + DANFVMT SG IVE+QG+AE FS+D F ++NLAK I L+ LQK I
Sbjct: 214 EDSTAETDANFVMTGSGGIVEIQGTAEGKPFSEDEFGQLMNLAKAGIKRLVDLQKMAI 271
>gi|126738497|ref|ZP_01754202.1| ribonuclease PH [Roseobacter sp. SK209-2-6]
gi|126720296|gb|EBA17002.1| ribonuclease PH [Roseobacter sp. SK209-2-6]
Length = 237
Score = 187 bits (474), Expect = 1e-45, Method: Composition-based stats.
Identities = 129/237 (54%), Positives = 170/237 (71%), Gaps = 2/237 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR SGR+ N+MR +S+ +K+AEGSCL+K G+TH+L TATLEE+VP +I+ + GW+T
Sbjct: 1 MRPSGRELNEMRPVSIETGFTKHAEGSCLIKMGETHVLCTATLEERVPPFIKGSGLGWVT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPR+T R++REA SG+QGGR+ EIQR+IGRALR+ VD ALG RQI IDCDV+Q
Sbjct: 61 AEYGMLPRATNTRMRREAASGKQGGRTVEIQRLIGRALRAGVDRVALGERQITIDCDVLQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTR AAITG WVAL + + + + V+AISCG+ G P++DLDY
Sbjct: 121 ADGGTRCAAITGGWVALRLAVNKLMKAGDVTIDPLM--DPVSAISCGIYAGQPVLDLDYP 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
EDS VD NF+MT SG ++EVQ SAE + FS+D +++LA+ ++L LQK
Sbjct: 179 EDSEAGVDGNFIMTGSGKLIEVQMSAEGSIFSRDQMNQLMDLAEKGTSELAALQKAA 235
>gi|260431972|ref|ZP_05785943.1| ribonuclease PH [Silicibacter lacuscaerulensis ITI-1157]
gi|260415800|gb|EEX09059.1| ribonuclease PH [Silicibacter lacuscaerulensis ITI-1157]
Length = 237
Score = 186 bits (473), Expect = 2e-45, Method: Composition-based stats.
Identities = 124/237 (52%), Positives = 168/237 (70%), Gaps = 2/237 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR SGR ++MR +S+ +K+AEGSCL+K GDTH+L TAT+E++VP +I+ + GW+T
Sbjct: 1 MRPSGRDLSEMRPVSIETGFTKHAEGSCLIKIGDTHVLCTATIEDRVPPFIKGSGLGWVT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPR+T R++REA SG+QGGR+ EIQR+IGRALR+ VD ALG RQI +DCDV+Q
Sbjct: 61 AEYGMLPRATNTRMRREAASGKQGGRTVEIQRLIGRALRAGVDRVALGERQITVDCDVLQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTR A+ITG WVAL + + + V VAA+SCG+ G P++DLDY
Sbjct: 121 ADGGTRCASITGGWVALRLAVNKLMKAGDVITDPLV--DPVAAVSCGIYAGQPVLDLDYP 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
EDS VD NF+MT SG ++EVQ SAE + FS+ ++ LA+ +++L+ QK
Sbjct: 179 EDSEAGVDGNFIMTGSGKLIEVQMSAEGSVFSRAQMDQLMELAEKGVSELVAAQKAA 235
>gi|302551723|ref|ZP_07304065.1| ribonuclease PH [Streptomyces viridochromogenes DSM 40736]
gi|302469341|gb|EFL32434.1| ribonuclease PH [Streptomyces viridochromogenes DSM 40736]
Length = 245
Score = 186 bits (473), Expect = 2e-45, Method: Composition-based stats.
Identities = 117/237 (49%), Positives = 155/237 (65%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R+ GR Q+R I++ R SK+AEGS LV FGDT + TA++ E VP W + + GW+TA
Sbjct: 3 RIDGRTPQQLRPITIERGWSKHAEGSVLVSFGDTKVFCTASVTEGVPRWRKGSGEGWVTA 62
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
EY MLPRST R RE+V GR GGR+ EI R+IGR+LR+V+D ALG I++DCDV+QA
Sbjct: 63 EYSMLPRSTNTRGDRESVKGRIGGRTHEISRLIGRSLRAVIDYKALGENTIVLDCDVLQA 122
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
DGGTRTAAITGA+VAL D + + Q L G V+A+S G++ G P++DL Y E
Sbjct: 123 DGGTRTAAITGAYVALADAVAWAQRKKLIKAGRQPLTGTVSAVSVGIVGGVPLLDLCYEE 182
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
D D D N V T G VEVQG+AE F++D A+L+LA ++L Q+ +
Sbjct: 183 DVKADTDMNVVCTGDGRFVEVQGTAEAEPFARDELNALLDLAVAGCSELAAHQRTAL 239
>gi|297559365|ref|YP_003678339.1| ribonuclease PH [Nocardiopsis dassonvillei subsp. dassonvillei DSM
43111]
gi|296843813|gb|ADH65833.1| ribonuclease PH [Nocardiopsis dassonvillei subsp. dassonvillei DSM
43111]
Length = 239
Score = 186 bits (473), Expect = 2e-45, Method: Composition-based stats.
Identities = 116/239 (48%), Positives = 159/239 (66%), Gaps = 2/239 (0%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R GR Q+R +++TR ++AEGS LV+FGDT +L A++E+ VP W R T GW+TA
Sbjct: 3 RPDGRVPTQLRPVTITRNWLRHAEGSVLVEFGDTRVLCAASVEDGVPRWRRGTGEGWVTA 62
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
EY MLPRST R RE+V G+ GGR+ EI R++GR+LR+VVD A+G I +DCDV+QA
Sbjct: 63 EYAMLPRSTDTRGSRESVRGKIGGRTHEISRLVGRSLRAVVDFKAMGEHTITLDCDVLQA 122
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
DGGTRTAAITGA+VAL D ++ + + + L G +AA+S G++ G P +DL+Y E
Sbjct: 123 DGGTRTAAITGAYVALADAMKWLRKR--RKLKNNPLTGSLAAVSVGVVQGQPRLDLNYLE 180
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
DS D D N V+T G +EVQG+AE A F +D +L+LA +L +QK +S
Sbjct: 181 DSVADTDMNVVITGDGKFIEVQGTAEGAPFDRDLLNQLLDLAVSGCGELTAIQKKALSE 239
>gi|72162764|ref|YP_290421.1| ribonuclease PH [Thermobifida fusca YX]
gi|71916496|gb|AAZ56398.1| RNAse PH [Thermobifida fusca YX]
Length = 239
Score = 186 bits (473), Expect = 2e-45, Method: Composition-based stats.
Identities = 116/239 (48%), Positives = 161/239 (67%), Gaps = 2/239 (0%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R GR NQ+R + +TR ++AEGS L++FG+T +L AT+EE VP W R T GW+TA
Sbjct: 3 RPDGRTPNQLRPVRITRNWLRHAEGSALIEFGETRVLCAATVEEGVPRWRRGTGEGWVTA 62
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
EY MLPR+T R RE+V G+ GGR+ EI R+IGR+LR+VVD A+G I +DCDV+QA
Sbjct: 63 EYAMLPRATDTRSARESVKGKIGGRTHEISRLIGRSLRAVVDFKAMGEYTITLDCDVLQA 122
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
DGGTRTAAITGA+VAL D ++++ + L G VAA+S G++ G P +DL+Y E
Sbjct: 123 DGGTRTAAITGAYVALVDAVRYLRK--QLDLKTNPLTGSVAAVSVGIVQGQPRLDLNYLE 180
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
DS + D N V+T +G +E+QG+AE A F + +L+LA A+L ++QK +S
Sbjct: 181 DSVAETDMNVVVTGTGEFIEIQGTAENAPFDRKLLDTLLDLAVAGCAELTEIQKKALSE 239
>gi|295396715|ref|ZP_06806861.1| tRNA nucleotidyltransferase [Brevibacterium mcbrellneri ATCC 49030]
gi|294970461|gb|EFG46390.1| tRNA nucleotidyltransferase [Brevibacterium mcbrellneri ATCC 49030]
Length = 248
Score = 186 bits (473), Expect = 2e-45, Method: Composition-based stats.
Identities = 121/242 (50%), Positives = 167/242 (69%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR GRQ N++RE+ +TR +AEGS LV+FG T +L A+L E VP W++ GW T
Sbjct: 1 MRFDGRQANELREVKITRGWLDHAEGSVLVEFGRTRVLCAASLTEGVPRWMKGEGRGWAT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEY MLPR+T R RE+V G+ GGR+ EI R+IGR+LR+V+DLS LG + +DCDV+Q
Sbjct: 61 AEYAMLPRATHTRSSRESVKGKIGGRTHEISRLIGRSLRAVLDLSKLGENTLQVDCDVLQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTAAITGA+VAL D + ++ + ++VLK VAAIS G++ G P++DL Y
Sbjct: 121 ADGGTRTAAITGAYVALVDAVAKGKELGWIPKNAEVLKDSVAAISVGIVDGTPVLDLPYE 180
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
EDST + D N VMT SG VEVQG+AE A F + ++L+LA+ A+L ++Q ++
Sbjct: 181 EDSTAETDMNVVMTGSGAFVEVQGTAEGAPFDRAELGSLLDLAEHGCAELARIQASALAQ 240
Query: 241 EV 242
++
Sbjct: 241 DL 242
>gi|294629581|ref|ZP_06708141.1| ribonuclease PH [Streptomyces sp. e14]
gi|292832914|gb|EFF91263.1| ribonuclease PH [Streptomyces sp. e14]
Length = 241
Score = 186 bits (473), Expect = 2e-45, Method: Composition-based stats.
Identities = 116/239 (48%), Positives = 156/239 (65%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R+ GR Q+R +++ R SK+AEGS LV FGDT +L TA++ E VP W + + GW+TA
Sbjct: 3 RIDGRTPEQLRPVTIERGWSKHAEGSVLVSFGDTRVLCTASVTEGVPRWRKGSGEGWVTA 62
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
EY MLPR+T R RE+V GR GGR+ EI R+IGR+LR+V+D ALG +++DCDV+QA
Sbjct: 63 EYAMLPRATNTRGDRESVKGRIGGRTHEISRLIGRSLRAVIDYKALGENTVVLDCDVLQA 122
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
DGGTRTAAITGA+VAL D + + Q L G V+A+S G++ G P++DL Y E
Sbjct: 123 DGGTRTAAITGAFVALADAVAWAQGKKLIKTGRQPLTGTVSAVSVGIVGGVPLLDLCYEE 182
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
D D D N V T G VEVQG+AE F++D A+L+LA DL +Q+ +
Sbjct: 183 DVRADTDMNVVCTGDGRFVEVQGTAEAEPFARDELNALLDLAVAGCTDLAAIQRAALEK 241
>gi|190890032|ref|YP_001976574.1| ribonuclease PH protein [Rhizobium etli CIAT 652]
gi|218516544|ref|ZP_03513384.1| ribonuclease PH [Rhizobium etli 8C-3]
gi|226736928|sp|B3PZA2|RNPH_RHIE6 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|190695311|gb|ACE89396.1| ribonuclease PH protein [Rhizobium etli CIAT 652]
Length = 239
Score = 186 bits (473), Expect = 2e-45, Method: Composition-based stats.
Identities = 148/239 (61%), Positives = 193/239 (80%), Gaps = 1/239 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR SGR+ +QMR++S R SK+AEGSCLVKFGDTH+L TA+LE+K P W+RNT GW+T
Sbjct: 1 MRPSGRKTDQMRKVSFERNFSKHAEGSCLVKFGDTHVLCTASLEDKTPPWLRNTGKGWVT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPR+TG R+KREA +G+QGGR+QEIQR+IGR+LR+VVDL ALG RQI +DCDVIQ
Sbjct: 61 AEYGMLPRATGERMKREAAAGKQGGRTQEIQRLIGRSLRAVVDLQALGERQITLDCDVIQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+ITG W+AL+DCL+ ME + ++ +VLK HVAAISCG+ ++DLDY
Sbjct: 121 ADGGTRTASITGGWIALYDCLKWMESRNM-IKVDRVLKDHVAAISCGVFASQAVIDLDYL 179
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
EDS+ + DANFVMT +G IVE+QG+AE F+++ F +++ LAK+ I +L+ LQK I+
Sbjct: 180 EDSSAETDANFVMTGAGGIVEIQGTAEGTPFTEEEFTSLMGLAKNGIGELVALQKQAIA 238
>gi|146296019|ref|YP_001179790.1| ribonuclease PH [Caldicellulosiruptor saccharolyticus DSM 8903]
gi|166228275|sp|A4XI64|RNPH_CALS8 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|145409595|gb|ABP66599.1| RNAse PH [Caldicellulosiruptor saccharolyticus DSM 8903]
Length = 258
Score = 186 bits (473), Expect = 2e-45, Method: Composition-based stats.
Identities = 112/241 (46%), Positives = 159/241 (65%), Gaps = 2/241 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR R N++R I +TR KYAEGSCL++ G+T ++ TAT+++KVP + + + GWIT
Sbjct: 1 MRQDQRSYNELRPIKITRNFIKYAEGSCLIEMGNTKVIITATIDDKVPPFKKGSGEGWIT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEY MLPR+T R R+ R GRS EIQR+IGRALR+ ++ ALG R II+DCDVIQ
Sbjct: 61 AEYSMLPRATQQRNVRDINKLRLSGRSHEIQRLIGRALRAGINFKALGERVIILDCDVIQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+ITG ++A+ D + + D K + + VAA+S G+ G ++DL +
Sbjct: 121 ADGGTRTASITGGFIAMFDACKKLYDD--KVIENFPITDFVAAVSVGICDGVEMLDLCFE 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
EDS VD N VM D G +E+QG+AE F+Q+ F +L L K I +I++Q++V+
Sbjct: 179 EDSKASVDMNLVMNDKGEFIEIQGTAEGGAFTQEQFEKLLELGKQGIQKIIEIQREVLGE 238
Query: 241 E 241
+
Sbjct: 239 D 239
>gi|323701932|ref|ZP_08113601.1| ribonuclease PH [Desulfotomaculum nigrificans DSM 574]
gi|323533018|gb|EGB22888.1| ribonuclease PH [Desulfotomaculum nigrificans DSM 574]
Length = 250
Score = 186 bits (472), Expect = 2e-45, Method: Composition-based stats.
Identities = 117/241 (48%), Positives = 166/241 (68%), Gaps = 2/241 (0%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R+ GR Q+R + +T +KYAEGS L++ GDT ++ TAT+E++VP +++ GW+TA
Sbjct: 3 RVDGRTPGQIRPVKITANYNKYAEGSVLIEIGDTRVICTATVEDRVPPFLKGLGKGWVTA 62
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
EY M+PR+TG R REA G+ GR+ EIQR+IGRALRSVVDL ALG R + +DCDVIQA
Sbjct: 63 EYSMIPRATGTRTTREAAKGKLSGRTMEIQRLIGRALRSVVDLEALGERMVTMDCDVIQA 122
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
DGGTRT++ITGA+VA+ L + + + + +AA S G++ G P++DL Y E
Sbjct: 123 DGGTRTSSITGAYVAMILALNKLVEQGMLEK--IPVNDFIAATSVGIVNGTPVLDLCYAE 180
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
DS +VD N V+T +G VE+QG+ E ATFS+D +L+LA I +LIK+Q+ V+ E
Sbjct: 181 DSAAEVDMNVVLTGTGRFVEIQGTGEEATFSRDEMNQLLDLAAAGIKELIKVQQQVLGPE 240
Query: 242 V 242
+
Sbjct: 241 I 241
>gi|49082078|gb|AAT50439.1| PA5334 [synthetic construct]
Length = 240
Score = 186 bits (472), Expect = 2e-45, Method: Composition-based stats.
Identities = 123/239 (51%), Positives = 162/239 (67%), Gaps = 2/239 (0%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R SGR +Q+R I +TR +K+AEGS LV+FGDT ++ T + E VP +++ GW+TA
Sbjct: 3 RPSGRAADQLRPIRITRHYTKHAEGSVLVEFGDTRVICTVSAESGVPRFLKGQGQGWLTA 62
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
EYGMLPRSTG R +REA G+QG R+ EIQR+IGR+LR+ +DLS LG + IDCDVIQA
Sbjct: 63 EYGMLPRSTGERNQREASRGKQGSRTLEIQRLIGRSLRAALDLSKLGENTLYIDCDVIQA 122
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
DGGTRTA+ITGA VAL D L ++ LK VAA+S G+ G P++DLDY E
Sbjct: 123 DGGTRTASITGATVALIDALAVLKKR--GALKGNPLKQMVAAVSVGIYQGVPVLDLDYLE 180
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
DS + D N VMTD+G +EVQG+AE A F AML LA+ + +L +LQ+ ++
Sbjct: 181 DSAAETDLNVVMTDAGGFIEVQGTAEGAPFRPAELNAMLELAQQGMQELFELQRAALAE 239
>gi|71553993|gb|AAZ33204.1| ribonuclease PH [Pseudomonas syringae pv. phaseolicola 1448A]
Length = 294
Score = 186 bits (472), Expect = 2e-45, Method: Composition-based stats.
Identities = 120/239 (50%), Positives = 167/239 (69%), Gaps = 1/239 (0%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R SGR +Q+R I +TR +K+AEGS LV+FGDT ++ T ++E VP +++ GW+TA
Sbjct: 57 RPSGRAADQLRSIRITRNYTKHAEGSVLVEFGDTKVICTVSVENGVPRFLKGQGQGWLTA 116
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
EYGMLPR+TG R +REA G+QGGR+ EIQR+IGR+LR+ +D+S LG + +DCDVIQA
Sbjct: 117 EYGMLPRATGERNQREASRGKQGGRTLEIQRLIGRSLRAALDMSKLGDVTLYVDCDVIQA 176
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
DGGTRTA+ITGA VAL D L+ ++ + LK +AA+S GM G P++DLDY E
Sbjct: 177 DGGTRTASITGAMVALADALKVIKKRG-GLKGGDPLKQMIAAVSVGMYQGEPVLDLDYPE 235
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
DS + D N VMT +G +EVQG+AE A F + AML LA+ + +L +LQ+ +++
Sbjct: 236 DSAAETDLNVVMTSAGGFIEVQGTAEGAPFQPEELNAMLALAQKGMTELFELQRAALAD 294
>gi|161611344|ref|YP_272506.2| ribonuclease PH [Pseudomonas syringae pv. phaseolicola 1448A]
gi|320322255|gb|EFW78351.1| ribonuclease PH [Pseudomonas syringae pv. glycinea str. B076]
gi|320331904|gb|EFW87842.1| ribonuclease PH [Pseudomonas syringae pv. glycinea str. race 4]
gi|330873180|gb|EGH07329.1| ribonuclease PH [Pseudomonas syringae pv. glycinea str. race 4]
Length = 240
Score = 186 bits (472), Expect = 2e-45, Method: Composition-based stats.
Identities = 120/239 (50%), Positives = 167/239 (69%), Gaps = 1/239 (0%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R SGR +Q+R I +TR +K+AEGS LV+FGDT ++ T ++E VP +++ GW+TA
Sbjct: 3 RPSGRAADQLRSIRITRNYTKHAEGSVLVEFGDTKVICTVSVENGVPRFLKGQGQGWLTA 62
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
EYGMLPR+TG R +REA G+QGGR+ EIQR+IGR+LR+ +D+S LG + +DCDVIQA
Sbjct: 63 EYGMLPRATGERNQREASRGKQGGRTLEIQRLIGRSLRAALDMSKLGDVTLYVDCDVIQA 122
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
DGGTRTA+ITGA VAL D L+ ++ + LK +AA+S GM G P++DLDY E
Sbjct: 123 DGGTRTASITGAMVALADALKVIKKRG-GLKGGDPLKQMIAAVSVGMYQGEPVLDLDYPE 181
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
DS + D N VMT +G +EVQG+AE A F + AML LA+ + +L +LQ+ +++
Sbjct: 182 DSAAETDLNVVMTSAGGFIEVQGTAEGAPFQPEELNAMLALAQKGMTELFELQRAALAD 240
>gi|302521564|ref|ZP_07273906.1| ribonuclease PH [Streptomyces sp. SPB78]
gi|302430459|gb|EFL02275.1| ribonuclease PH [Streptomyces sp. SPB78]
Length = 241
Score = 186 bits (472), Expect = 2e-45, Method: Composition-based stats.
Identities = 115/238 (48%), Positives = 155/238 (65%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R+ GR +Q+R +S+ R SK+AEGS LV FGDT +L TA+ E VP W + + GW+TA
Sbjct: 3 RIDGRTPDQLRPVSIERGWSKHAEGSVLVSFGDTRVLCTASFTEGVPRWRKGSGEGWVTA 62
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
EY MLPR+T R RE+V G+ GGR+ EI R+IGR+LR+VVD ALG +++DCDV+QA
Sbjct: 63 EYAMLPRATNTRGDRESVRGKIGGRTHEISRLIGRSLRAVVDPRALGENTVVLDCDVLQA 122
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
DGGTRTAAITGA+VAL D ++ + L+ V+A+S G++ P +DL Y E
Sbjct: 123 DGGTRTAAITGAYVALADAVRWAQGKKLVKAGRVPLRDTVSAVSVGIVDSVPYLDLRYEE 182
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
D + D N V T G VEVQG+AE A F + A+L+LA ADL LQ++ +
Sbjct: 183 DVRAETDMNVVRTGDGRFVEVQGTAEAAPFDRAELDALLDLASAGCADLAALQREALE 240
>gi|330964252|gb|EGH64512.1| ribonuclease PH [Pseudomonas syringae pv. actinidiae str. M302091]
Length = 240
Score = 186 bits (472), Expect = 2e-45, Method: Composition-based stats.
Identities = 120/239 (50%), Positives = 167/239 (69%), Gaps = 1/239 (0%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R SGR +Q+R I +TR +K+AEGS LV+FGDT ++ T ++E VP +++ GW+TA
Sbjct: 3 RPSGRAADQLRSIRITRNYTKHAEGSVLVEFGDTKVICTVSVENGVPRFLKGQGQGWLTA 62
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
EYGMLPR+TG R +REA G+QGGR+ EIQR+IGR+LR+ +D+S LG + +DCDVIQA
Sbjct: 63 EYGMLPRATGERNQREASRGKQGGRTLEIQRLIGRSLRAALDMSKLGDVTLYVDCDVIQA 122
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
DGGTRTA+ITGA VAL D L+ ++ + LK +AA+S GM G P++DLDY E
Sbjct: 123 DGGTRTASITGAMVALADALKVLKKRG-GLKGGDPLKQMIAAVSVGMYQGEPVLDLDYLE 181
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
DS + D N VMT +G +EVQG+AE A F + AML LA+ + +L +LQ+ +++
Sbjct: 182 DSAAETDLNVVMTSAGGFIEVQGTAEGAPFQPEELNAMLALAQKGMTELFELQRAALAD 240
>gi|304317496|ref|YP_003852641.1| ribonuclease PH [Thermoanaerobacterium thermosaccharolyticum DSM
571]
gi|302778998|gb|ADL69557.1| ribonuclease PH [Thermoanaerobacterium thermosaccharolyticum DSM
571]
Length = 259
Score = 186 bits (472), Expect = 2e-45, Method: Composition-based stats.
Identities = 113/239 (47%), Positives = 162/239 (67%), Gaps = 2/239 (0%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R+ GR +R I +TR ++YAEGS L++ G+T ++ TA++E+KVP + + T GWIT+
Sbjct: 3 RVDGRDPKSLRPIKITRNFNRYAEGSVLIEVGNTKVICTASIEDKVPPFQKGTGKGWITS 62
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
EY M+PR+T R +RE+ G+Q GR+ EIQR+IGRALR+VVDL ALG + I IDCDVIQA
Sbjct: 63 EYSMIPRATETRTQRESTKGKQSGRTMEIQRLIGRALRAVVDLDALGEKTIWIDCDVIQA 122
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
DGGTRTA+ITG++VAL D + + +K VAA+S G++ ++DL Y E
Sbjct: 123 DGGTRTASITGSFVALVDAMNKL--LQKGVISKMPIKSFVAAVSVGIVGDNKLLDLCYLE 180
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
D VD N VMTD G +E+QG+ E FS+D F +L LA+D + +I++QK+ + +
Sbjct: 181 DCNAHVDMNIVMTDKGEFIEIQGTGEGGPFSKDDFTELLGLAEDGLNKIIEIQKEALGD 239
>gi|66043483|ref|YP_233324.1| ribonuclease PH [Pseudomonas syringae pv. syringae B728a]
gi|257481756|ref|ZP_05635797.1| ribonuclease PH [Pseudomonas syringae pv. tabaci ATCC 11528]
gi|302189241|ref|ZP_07265914.1| ribonuclease PH [Pseudomonas syringae pv. syringae 642]
gi|75503908|sp|Q4ZZY6|RNPH_PSEU2 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|63254190|gb|AAY35286.1| Ribonuclease PH [Pseudomonas syringae pv. syringae B728a]
gi|330876506|gb|EGH10655.1| ribonuclease PH [Pseudomonas syringae pv. morsprunorum str.
M302280PT]
gi|330890924|gb|EGH23585.1| ribonuclease PH [Pseudomonas syringae pv. mori str. 301020]
gi|330895695|gb|EGH27987.1| ribonuclease PH [Pseudomonas syringae pv. japonica str. M301072PT]
gi|330941124|gb|EGH44004.1| ribonuclease PH [Pseudomonas syringae pv. pisi str. 1704B]
gi|330957289|gb|EGH57549.1| ribonuclease PH [Pseudomonas syringae pv. maculicola str. ES4326]
gi|330972206|gb|EGH72272.1| ribonuclease PH [Pseudomonas syringae pv. aceris str. M302273PT]
gi|330977343|gb|EGH77296.1| ribonuclease PH [Pseudomonas syringae pv. aptata str. DSM 50252]
gi|330986869|gb|EGH84972.1| ribonuclease PH [Pseudomonas syringae pv. lachrymans str. M301315]
gi|331009390|gb|EGH89446.1| ribonuclease PH [Pseudomonas syringae pv. tabaci ATCC 11528]
Length = 240
Score = 186 bits (472), Expect = 2e-45, Method: Composition-based stats.
Identities = 120/239 (50%), Positives = 167/239 (69%), Gaps = 1/239 (0%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R SGR +Q+R I +TR +K+AEGS LV+FGDT ++ T ++E VP +++ GW+TA
Sbjct: 3 RPSGRAADQLRSIRITRNYTKHAEGSVLVEFGDTKVICTVSVENGVPRFLKGQGQGWLTA 62
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
EYGMLPR+TG R +REA G+QGGR+ EIQR+IGR+LR+ +D+S LG + +DCDVIQA
Sbjct: 63 EYGMLPRATGERNQREASRGKQGGRTLEIQRLIGRSLRAALDMSKLGDVTLYVDCDVIQA 122
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
DGGTRTA+ITGA VAL D L+ ++ + LK +AA+S GM G P++DLDY E
Sbjct: 123 DGGTRTASITGAMVALADALKVIKKRG-GLKGGDPLKQMIAAVSVGMYQGEPVLDLDYLE 181
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
DS + D N VMT +G +EVQG+AE A F + AML LA+ + +L +LQ+ +++
Sbjct: 182 DSAAETDLNVVMTSAGGFIEVQGTAEGAPFQPEELNAMLALAQKGMTELFELQRAALAD 240
>gi|94499853|ref|ZP_01306389.1| ribonuclease PH [Oceanobacter sp. RED65]
gi|94428054|gb|EAT13028.1| ribonuclease PH [Oceanobacter sp. RED65]
Length = 238
Score = 186 bits (472), Expect = 2e-45, Method: Composition-based stats.
Identities = 123/240 (51%), Positives = 166/240 (69%), Gaps = 2/240 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR SGR +Q+R++ +TR +K+AEGS LV+ GDT ++ A++E KVP ++R GW+T
Sbjct: 1 MRPSGRALDQLRDVKITRNFTKHAEGSVLVEVGDTKVICNASVENKVPPFLRGQGQGWVT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPRSTG+R+ REA G+QGGR+ EI R+IGR+LR+ VDL ALG I IDCDVIQ
Sbjct: 61 AEYGMLPRSTGSRMIREAAKGKQGGRTVEISRLIGRSLRAAVDLEALGENSITIDCDVIQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTR A+ITGA VAL D + M + LK +AA+S G+ G I+DLDY
Sbjct: 121 ADGGTRCASITGACVALADAINSMIEAGTLKAS--PLKYMIAAVSVGVYEGQAILDLDYP 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
EDS + D N +M D+G VE+QG+AE F + AML+LAK +A++ ++QK ++N
Sbjct: 179 EDSNAETDLNVIMADNGGFVEIQGTAEGEPFQPEELTAMLDLAKKGLAEITEIQKQSLAN 238
>gi|297160096|gb|ADI09808.1| ribonuclease PH [Streptomyces bingchenggensis BCW-1]
Length = 243
Score = 186 bits (472), Expect = 2e-45, Method: Composition-based stats.
Identities = 113/240 (47%), Positives = 158/240 (65%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R+ GR +Q+R +++ R SK+AEGS LV FGDT +L TA+ E VP W + + GW+TA
Sbjct: 3 RIDGRTPDQLRPVTIERAWSKHAEGSVLVSFGDTRVLCTASFTEGVPRWRKGSGEGWVTA 62
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
EY MLPR+T R RE+V G+ GGR+ EI R+IGR+LR+V+D ALG +++DCDV+QA
Sbjct: 63 EYAMLPRATNTRGDRESVRGKIGGRTHEISRLIGRSLRAVIDYKALGENTVVLDCDVLQA 122
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
DGGTRTAAITGA+VAL D L + Q L G V+A+S G++ G P++DL Y E
Sbjct: 123 DGGTRTAAITGAYVALADALTWGQGKKLIKAGRQPLTGTVSAVSVGIVGGIPLLDLCYEE 182
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
D + D N V T G VEVQG+AE F+++ +L+LA +L ++Q+ ++ E
Sbjct: 183 DVRAETDMNVVCTGDGRFVEVQGTAEGEPFAREELNGLLDLAVAGCGELAEIQRAALAGE 242
>gi|260579680|ref|ZP_05847543.1| tRNA nucleotidyltransferase [Corynebacterium jeikeium ATCC 43734]
gi|258602199|gb|EEW15513.1| tRNA nucleotidyltransferase [Corynebacterium jeikeium ATCC 43734]
Length = 256
Score = 186 bits (472), Expect = 2e-45, Method: Composition-based stats.
Identities = 111/241 (46%), Positives = 159/241 (65%), Gaps = 2/241 (0%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R GR N++R + +TR + GS LV+FG+T ++ TA++EE VP + +++ GW+TA
Sbjct: 18 RADGRATNELRPVRITRGFTSNPAGSVLVEFGNTRVMCTASVEEGVPRFKKDSGEGWLTA 77
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
EY MLP ST R+ RE++ G+ GR+QEI R++GRALR+ VDL LG + IDCDV+QA
Sbjct: 78 EYAMLPASTHERMPRESMKGKVKGRTQEISRLVGRALRAAVDLKELGENTVNIDCDVLQA 137
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
DGGTRTAAITGA+VAL D L + Q L+ VAA+S G++ G P +DL Y E
Sbjct: 138 DGGTRTAAITGAYVALADALA--VLQARGVVPGQPLRAPVAAVSVGIIDGVPCLDLPYEE 195
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
DS DVD N MT G VE+QG+ E A F+++ +L+LA+ + +LI+ Q+ ++ E
Sbjct: 196 DSRADVDMNVAMTAEGRFVEIQGTGENAEFTREELNTLLDLAEGGLRELIEAQRAALAQE 255
Query: 242 V 242
+
Sbjct: 256 L 256
>gi|295677344|ref|YP_003605868.1| ribonuclease PH [Burkholderia sp. CCGE1002]
gi|295437187|gb|ADG16357.1| ribonuclease PH [Burkholderia sp. CCGE1002]
Length = 245
Score = 186 bits (472), Expect = 2e-45, Method: Composition-based stats.
Identities = 128/238 (53%), Positives = 168/238 (70%), Gaps = 2/238 (0%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R SGRQ NQ+R++ +TR +K+AEGS LV+FGDT ++ TA++ E VP ++R+ GW+TA
Sbjct: 7 RPSGRQPNQLRDVRITRHYTKHAEGSVLVEFGDTKVICTASVSESVPPFLRDRGQGWLTA 66
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
EYGMLPR+T R REA G+Q GR+QEIQR+IGRALRSV DL LG+R I +DCDVIQA
Sbjct: 67 EYGMLPRATHTRSDREAARGKQTGRTQEIQRLIGRALRSVFDLEKLGARTINLDCDVIQA 126
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
DGGTRTA+ITGA+VA HD + + + +VAAIS G+ G P++DLDY E
Sbjct: 127 DGGTRTASITGAFVAAHDAVARLLATGRIESS--PITDYVAAISVGVYDGVPVLDLDYDE 184
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
DS D D N VMT +G VE+QG+AE FS++ A+L+LA D I+ LI QK+ +
Sbjct: 185 DSQCDTDMNVVMTGAGGFVEIQGTAEGVPFSREEMNALLDLASDGISTLIAKQKEALG 242
>gi|27375785|ref|NP_767314.1| ribonuclease PH [Bradyrhizobium japonicum USDA 110]
gi|61216053|sp|Q89WK4|RNPH_BRAJA RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|27348923|dbj|BAC45939.1| Ribonuclease PH [Bradyrhizobium japonicum USDA 110]
Length = 237
Score = 186 bits (472), Expect = 2e-45, Method: Composition-based stats.
Identities = 135/239 (56%), Positives = 178/239 (74%), Gaps = 2/239 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR S R +++R ++L R V KYAEGSCLVKFGDTH+L TATLE+++P W++ GW+T
Sbjct: 1 MRPSRRAPDELRPVTLERGVVKYAEGSCLVKFGDTHVLVTATLEDRLPPWLKGQGRGWVT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPR+T R +REA +G+Q GR+ EIQR+IGR+LR++++L ALG RQI +DCDV+Q
Sbjct: 61 AEYGMLPRATSERTRREASAGKQSGRTVEIQRLIGRSLRTIINLEALGERQITVDCDVLQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+ITGAWVAL DC+ M+ + + +VAAISCG+ G P++DLDY
Sbjct: 121 ADGGTRTASITGAWVALADCVNWMKARNMVKANVL--RDNVAAISCGIYNGTPVLDLDYA 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
EDS DANFVMT G I+EVQG+AER F+QD A++ LA+ IA L+ LQK ++
Sbjct: 179 EDSEAQTDANFVMTGDGRIIEVQGTAEREPFTQDELLALMALAQKGIARLVDLQKLAVA 237
>gi|296160047|ref|ZP_06842867.1| ribonuclease PH [Burkholderia sp. Ch1-1]
gi|295889793|gb|EFG69591.1| ribonuclease PH [Burkholderia sp. Ch1-1]
Length = 246
Score = 186 bits (471), Expect = 3e-45, Method: Composition-based stats.
Identities = 128/240 (53%), Positives = 166/240 (69%), Gaps = 2/240 (0%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R SGRQ +Q+R++ +TR +K+AEGS LV+FGDT ++ TA++ E VP ++R+ GW+TA
Sbjct: 7 RPSGRQADQLRDVRITRHYTKHAEGSVLVEFGDTKVICTASIAESVPSFLRDRGQGWLTA 66
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
EYGMLPR+T R REA G+Q GR+QEIQR+IGRALRSV DL LG R + IDCDVIQA
Sbjct: 67 EYGMLPRATHTRSDREAARGKQTGRTQEIQRLIGRALRSVFDLEKLGVRTLHIDCDVIQA 126
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
DGGTRTA+ITGA+VA HD + + + +VAAIS G+ G P++DLDY E
Sbjct: 127 DGGTRTASITGAFVAAHDAVARLLATGRIESS--PITDYVAAISVGVYDGLPVLDLDYDE 184
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
DS D D N VMT +G VE+QG+AE FS+D A+L+LA D I LI QK + +
Sbjct: 185 DSQCDTDMNVVMTGAGGFVEIQGTAEGVPFSRDEMNALLDLASDGINTLIAKQKAALEQK 244
>gi|319786148|ref|YP_004145623.1| ribonuclease PH [Pseudoxanthomonas suwonensis 11-1]
gi|317464660|gb|ADV26392.1| ribonuclease PH [Pseudoxanthomonas suwonensis 11-1]
Length = 241
Score = 186 bits (471), Expect = 3e-45, Method: Composition-based stats.
Identities = 120/239 (50%), Positives = 162/239 (67%), Gaps = 2/239 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+R SGR +Q+R + + R +++AEGS LV FGDT +L TA+++ KVP ++R GW+T
Sbjct: 4 VRPSGRAPDQLRPVRIERGFTRHAEGSVLVSFGDTRVLCTASIDNKVPAFLRGKGEGWVT 63
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPRST R REA G+QGGR+ EIQR+IGR LR+ +D ALG R I +DCDV+Q
Sbjct: 64 AEYGMLPRSTHTRSDREAARGKQGGRTLEIQRLIGRTLRACIDRGALGERTITLDCDVLQ 123
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTAAITGA+VAL D ++ + + G VAA+S G+ G P++DLDY
Sbjct: 124 ADGGTRTAAITGAYVALVDAVRWL--QGRGEIKRDPVFGAVAAVSVGVYRGVPVLDLDYA 181
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
EDS D D N VM D G +E+QG+AE F +D A+L LA+ I L++LQ+ ++
Sbjct: 182 EDSDCDTDMNVVMNDGGGFIELQGTAEGHAFRRDELDALLALAETGIGQLLELQRQALA 240
>gi|318057177|ref|ZP_07975900.1| ribonuclease PH [Streptomyces sp. SA3_actG]
gi|318078066|ref|ZP_07985398.1| ribonuclease PH [Streptomyces sp. SA3_actF]
gi|333024799|ref|ZP_08452863.1| putative ribonuclease PH [Streptomyces sp. Tu6071]
gi|332744651|gb|EGJ75092.1| putative ribonuclease PH [Streptomyces sp. Tu6071]
Length = 241
Score = 186 bits (471), Expect = 3e-45, Method: Composition-based stats.
Identities = 115/238 (48%), Positives = 155/238 (65%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R+ GR +Q+R +S+ R SK+AEGS LV FGDT +L TA+ E VP W + + GW+TA
Sbjct: 3 RIDGRTPDQLRPVSIERGWSKHAEGSVLVSFGDTRVLCTASFTEGVPRWRKGSGEGWVTA 62
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
EY MLPR+T R RE+V G+ GGR+ EI R+IGR+LR+VVD ALG +++DCDV+QA
Sbjct: 63 EYAMLPRATNTRGDRESVRGKIGGRTHEISRLIGRSLRAVVDTRALGENTVVLDCDVLQA 122
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
DGGTRTAAITGA+VAL D ++ + L+ V+A+S G++ P +DL Y E
Sbjct: 123 DGGTRTAAITGAYVALADAVRWAQGKKLVKAGRVPLRDTVSAVSVGIVDSVPYLDLRYEE 182
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
D + D N V T G VEVQG+AE A F + A+L+LA ADL LQ++ +
Sbjct: 183 DVRAETDMNVVRTGDGRFVEVQGTAEAAPFDRAELDALLDLASAGCADLAALQREALE 240
>gi|68535568|ref|YP_250273.1| ribonuclease PH [Corynebacterium jeikeium K411]
gi|68263167|emb|CAI36655.1| ribonuclease PH [Corynebacterium jeikeium K411]
Length = 256
Score = 186 bits (471), Expect = 3e-45, Method: Composition-based stats.
Identities = 110/241 (45%), Positives = 159/241 (65%), Gaps = 2/241 (0%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R GR +++R + +TR + GS LV+FG+T ++ TA++EE VP + +++ GW+TA
Sbjct: 18 RADGRATDELRPVRITRGFTSNPAGSVLVEFGNTRVMCTASVEEGVPRFKKDSGEGWLTA 77
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
EY MLP ST R+ RE++ G+ GR+QEI R++GRALR+ VDL LG + IDCDV+QA
Sbjct: 78 EYAMLPASTHERMPRESMKGKVKGRTQEISRLVGRALRAAVDLKELGENTVNIDCDVLQA 137
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
DGGTRTAAITGA+VAL D L + Q L+ VAA+S G++ G P +DL Y E
Sbjct: 138 DGGTRTAAITGAYVALADALA--VLQARGVVPGQPLRAPVAAVSVGIIDGVPCLDLPYEE 195
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
DS DVD N MT G VE+QG+ E A F+++ +L+LA+ + +LI+ Q+ ++ E
Sbjct: 196 DSRADVDMNVAMTAEGRFVEIQGTGENAEFTREELNTLLDLAEGGLRELIEAQRAALAQE 255
Query: 242 V 242
+
Sbjct: 256 L 256
>gi|209519146|ref|ZP_03267951.1| ribonuclease PH [Burkholderia sp. H160]
gi|209500446|gb|EEA00497.1| ribonuclease PH [Burkholderia sp. H160]
Length = 245
Score = 186 bits (471), Expect = 3e-45, Method: Composition-based stats.
Identities = 128/238 (53%), Positives = 167/238 (70%), Gaps = 2/238 (0%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R SGRQ NQ+R++ +TR +K+AEGS LV+FGDT ++ TA++ E VP ++R+ GW+TA
Sbjct: 7 RPSGRQPNQLRDVRITRHYTKHAEGSVLVEFGDTKVICTASISESVPPFLRDRGQGWLTA 66
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
EYGMLPR+T R REA G+Q GR+QEIQR+IGRALRSV DL LG+R + +DCDVIQA
Sbjct: 67 EYGMLPRATHTRSDREAARGKQTGRTQEIQRLIGRALRSVFDLEKLGARTLNLDCDVIQA 126
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
DGGTRTA+ITGA+VA HD + + + +VAAIS G+ G P++DLDY E
Sbjct: 127 DGGTRTASITGAFVAAHDAVAKLLATGRIESS--PINDYVAAISVGVYDGVPVLDLDYDE 184
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
DS D D N VMT +G VE+QG+AE FS+D A+L+LA D I+ LI QK +
Sbjct: 185 DSQCDTDMNVVMTGAGGFVEIQGTAEGVPFSRDEMSALLDLASDGISTLIAKQKAALG 242
>gi|297194142|ref|ZP_06911540.1| ribonuclease PH [Streptomyces pristinaespiralis ATCC 25486]
gi|197721967|gb|EDY65875.1| ribonuclease PH [Streptomyces pristinaespiralis ATCC 25486]
Length = 244
Score = 186 bits (471), Expect = 3e-45, Method: Composition-based stats.
Identities = 113/239 (47%), Positives = 153/239 (64%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R+ GR Q+R +++ R SK+AEGS L+ FGDT + TA+ E VP W + + GW+T+
Sbjct: 3 RIDGRTPEQLRPVTIERGWSKHAEGSVLISFGDTKVFCTASFTEGVPRWRKGSGEGWVTS 62
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
EY MLPRST R RE+V G+ GGR+ EI R+IGR+LR+V+D ALG +++DCDV+QA
Sbjct: 63 EYSMLPRSTNTRGDRESVRGKIGGRTHEISRLIGRSLRAVIDYKALGENTVVLDCDVLQA 122
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
DGGTRTAAITGA+VAL D + + + L G VAA+S G++ G P++DL Y E
Sbjct: 123 DGGTRTAAITGAYVALADAIAWAQAKKIVKPGRKPLTGTVAAVSVGIVDGTPLLDLCYEE 182
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
D + D N V T G VEVQG+AE F + A+L+LA ADL LQ + +
Sbjct: 183 DVRAETDMNVVCTGDGRFVEVQGTAEAEPFDRKELNALLDLATGGCADLAALQAEALGQ 241
>gi|167586475|ref|ZP_02378863.1| ribonuclease PH [Burkholderia ubonensis Bu]
Length = 246
Score = 186 bits (471), Expect = 3e-45, Method: Composition-based stats.
Identities = 131/242 (54%), Positives = 174/242 (71%), Gaps = 3/242 (1%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R SGR+ +++R+++LTR +K+AEGS LV+FGDT ++ TA++ E+VP ++R+ GW+TA
Sbjct: 7 RPSGRRADELRKVTLTRHYTKHAEGSVLVEFGDTKVICTASVAERVPEFLRDRGQGWLTA 66
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
EYGMLPR+T R REA G+Q GR+QEIQR+IGRALR+V DL ALG R I IDCDVIQA
Sbjct: 67 EYGMLPRATHTRSDREAARGKQTGRTQEIQRLIGRALRAVFDLEALGPRTIHIDCDVIQA 126
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
DGGTRTA+ITGA+VA HD + + + + HVAAIS G+ G P++DLDY E
Sbjct: 127 DGGTRTASITGAFVAAHDAVSKLIAAGKLARS--PITDHVAAISVGVFDGTPVLDLDYPE 184
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS-N 240
DS D D N VMT +G VEVQG+AE FS+D A+L+LA+ I L++LQKD + +
Sbjct: 185 DSRCDTDMNVVMTGAGGFVEVQGTAEGVPFSRDEMNALLDLAQSGIGQLVRLQKDALGVS 244
Query: 241 EV 242
V
Sbjct: 245 HV 246
>gi|27364280|ref|NP_759808.1| ribonuclease PH [Vibrio vulnificus CMCP6]
gi|37678463|ref|NP_933072.1| ribonuclease PH [Vibrio vulnificus YJ016]
gi|320157673|ref|YP_004190052.1| ribonuclease PH [Vibrio vulnificus MO6-24/O]
gi|33301654|sp|Q8DDX4|RNPH_VIBVU RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|61216003|sp|Q7MPT3|RNPH_VIBVY RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|27360398|gb|AAO09335.1| ribonuclease PH [Vibrio vulnificus CMCP6]
gi|37197203|dbj|BAC93043.1| RNase PH [Vibrio vulnificus YJ016]
gi|319932985|gb|ADV87849.1| ribonuclease PH [Vibrio vulnificus MO6-24/O]
Length = 238
Score = 186 bits (471), Expect = 3e-45, Method: Composition-based stats.
Identities = 122/240 (50%), Positives = 168/240 (70%), Gaps = 2/240 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR + R +Q+R I +TR + YAEGS LV+FG+T +L AT+EE VP W++ GW+T
Sbjct: 1 MRPNDRAADQVRPIKITRNYTAYAEGSVLVEFGNTKVLCNATVEESVPRWLKGQGKGWVT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPR+T +R +REA +G+QGGR+ EIQR+I R+LR+VVDL A+G I +DCDVIQ
Sbjct: 61 AEYGMLPRATHSRTRREAANGKQGGRTMEIQRLIARSLRAVVDLEAMGEFMITVDCDVIQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+I+GA VA+ D QH+ D + +KGHVAA+S G+L + DL+Y
Sbjct: 121 ADGGTRTASISGASVAMADAFQHLVDS--GKLKANPMKGHVAAVSVGILGEDVLCDLEYV 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
EDS D D N VMT+ G ++E+QG+AE FS + A+L AK I++++ QK ++N
Sbjct: 179 EDSAADTDMNVVMTEEGKMIEIQGTAEGEPFSHEQLLALLESAKKGISEIVAAQKAALAN 238
>gi|312622868|ref|YP_004024481.1| ribonuclease ph [Caldicellulosiruptor kronotskyensis 2002]
gi|312203335|gb|ADQ46662.1| ribonuclease PH [Caldicellulosiruptor kronotskyensis 2002]
Length = 258
Score = 186 bits (471), Expect = 3e-45, Method: Composition-based stats.
Identities = 115/241 (47%), Positives = 159/241 (65%), Gaps = 2/241 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR R N++R I +TR KYAEGSCL++ G+T ++ TAT+++KVP + + + GWIT
Sbjct: 1 MRQDQRAYNEIRPIKITRNFIKYAEGSCLIEMGNTKVIVTATIDDKVPPFKKGSGEGWIT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEY MLPR+T R R+ R GRS EIQR+IGRALR+ ++ ALG R IIIDCDVIQ
Sbjct: 61 AEYSMLPRATQQRNVRDINKLRLSGRSHEIQRLIGRALRAGINFKALGERVIIIDCDVIQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+ITG ++A+ D + + D K + + VAA+S G+ G ++DL +
Sbjct: 121 ADGGTRTASITGGFIAMFDACKKLYDE--KIIENFPVTDFVAAVSVGICDGVEMLDLCFE 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
EDS VD N VM D G +E+QG+AE A FS D F +L L K I +I++Q++V+
Sbjct: 179 EDSKAAVDMNLVMNDKGEFIEIQGTAEGAPFSWDQFQKLLELGKQGIQKIIEIQREVLGE 238
Query: 241 E 241
+
Sbjct: 239 D 239
>gi|209693820|ref|YP_002261748.1| ribonuclease PH [Aliivibrio salmonicida LFI1238]
gi|226736880|sp|B6EPI9|RNPH_ALISL RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|208007771|emb|CAQ77892.1| ribonuclease PH [Aliivibrio salmonicida LFI1238]
Length = 238
Score = 185 bits (470), Expect = 3e-45, Method: Composition-based stats.
Identities = 127/240 (52%), Positives = 164/240 (68%), Gaps = 2/240 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR SGR Q+R I++TR + +AEGS LV+FG+T ++ TA++EE VP W++ GW+T
Sbjct: 1 MRPSGRTAQQVRPITITRHFTAHAEGSVLVEFGNTKVICTASVEENVPRWLKGKGKGWVT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPR+T R REA SG+QGGR+ EIQR+I R+LR+ VDL ALG + I +DCDVIQ
Sbjct: 61 AEYGMLPRATHTRNNREAASGKQGGRTMEIQRLIARSLRAAVDLEALGEQMITVDCDVIQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+ITGA VAL D + HM +KGHVAA+S G+ G I DL+Y
Sbjct: 121 ADGGTRTASITGASVALADAINHMIAS--GKLKKNPMKGHVAAVSVGIYKGEAICDLEYL 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
EDS D D N VM + G ++EVQG+AE A FS ML LA+ I D+I+ QK ++
Sbjct: 179 EDSAADTDMNVVMMEDGKMIEVQGTAEVAPFSHQELLDMLALAQQGINDIIEKQKAALAE 238
>gi|157963655|ref|YP_001503689.1| ribonuclease PH [Shewanella pealeana ATCC 700345]
gi|189043776|sp|A8H9B7|RNPH_SHEPA RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|157848655|gb|ABV89154.1| ribonuclease PH [Shewanella pealeana ATCC 700345]
Length = 237
Score = 185 bits (470), Expect = 3e-45, Method: Composition-based stats.
Identities = 123/239 (51%), Positives = 166/239 (69%), Gaps = 2/239 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR S R Q R +++TR+ + +AEGS LV+FGDT +L TA+ EE VP +++ GW+T
Sbjct: 1 MRPSNRTPAQSRPVTITRQFTAHAEGSVLVEFGDTKVLCTASFEEGVPRFLKGQGQGWVT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPRST +R++REA G+Q GR+QEIQR+IGR+LR+ VD+ LG I+IDCDVIQ
Sbjct: 61 AEYGMLPRSTHSRMQREAARGKQSGRTQEIQRLIGRSLRAAVDMKLLGENTIVIDCDVIQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTAAITGA VAL D L + LK +AA+S G+ G PI DL+Y
Sbjct: 121 ADGGTRTAAITGACVALVDALNW--ARGKGILKTNPLKFLIAAVSVGIYKGEPICDLEYI 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
EDS + D N VMT++G I+E+QG+AE FS + ++L+LAK I +++ +QK +S
Sbjct: 179 EDSAAETDMNVVMTETGKIIEIQGTAEGEPFSHEELLSLLDLAKHGIREIVDIQKASLS 237
>gi|90420650|ref|ZP_01228556.1| ribonuclease PH [Aurantimonas manganoxydans SI85-9A1]
gi|90334941|gb|EAS48702.1| ribonuclease PH [Aurantimonas manganoxydans SI85-9A1]
Length = 241
Score = 185 bits (470), Expect = 3e-45, Method: Composition-based stats.
Identities = 145/239 (60%), Positives = 185/239 (77%), Gaps = 1/239 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR S R +++R +SL R S++AEGSCLV+FGDTH+L TA+LEE+VP W++N+ GW+T
Sbjct: 1 MRPSKRAFDELRPVSLERNYSRHAEGSCLVRFGDTHVLCTASLEERVPGWLKNSGKGWVT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPR+TG+R++REA SG+Q GR+QEIQR++GR+LR+VVDL ALG RQI +DCDVIQ
Sbjct: 61 AEYGMLPRATGDRMRREAASGKQSGRTQEIQRLVGRSLRAVVDLQALGERQITVDCDVIQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTAAITG +VAL DCL M + VLK HVAAISCG+ G P++DLDY
Sbjct: 121 ADGGTRTAAITGGYVALADCLAWMGQRAMVDPAK-VLKDHVAAISCGIYKGEPVLDLDYP 179
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
EDS + DANFVMT +G IVE+QG+AE FSQD F +L+LA+ I DL+ +Q+ I
Sbjct: 180 EDSAAETDANFVMTGAGGIVEIQGTAEGTPFSQDEFLKLLDLARKGINDLVGMQRQAIE 238
>gi|158425913|ref|YP_001527205.1| ribonuclease PH [Azorhizobium caulinodans ORS 571]
gi|172047841|sp|A8HV93|RNPH_AZOC5 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|158332802|dbj|BAF90287.1| ribonuclease PH [Azorhizobium caulinodans ORS 571]
Length = 238
Score = 185 bits (470), Expect = 3e-45, Method: Composition-based stats.
Identities = 141/239 (58%), Positives = 178/239 (74%), Gaps = 2/239 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR S R ++MR +S R V ++AEGSCLVKFGDTH+L ATLEE++P W++ GW+T
Sbjct: 1 MRPSRRANDEMRAVSFERGVLRHAEGSCLVKFGDTHVLVAATLEERLPPWLKGQGRGWVT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEY MLPR+T R +REA +G+Q GR+QEIQR+IGR+LRSV DL LG RQI +DCDV+Q
Sbjct: 61 AEYSMLPRATLERTRREATTGKQSGRTQEIQRLIGRSLRSVTDLVGLGERQITLDCDVLQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTAAITGAWVALHDCL M S + LK +VAAISCG+ G P++DLDY
Sbjct: 121 ADGGTRTAAITGAWVALHDCLNWMYQRSM--LKTIPLKENVAAISCGIHEGTPVLDLDYA 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
EDS + DANFVMT +G IVE+QG+AE+ FSQD ++L LA+ + +L++LQK I
Sbjct: 179 EDSKAETDANFVMTGTGGIVEIQGTAEKTPFSQDELLSLLALARKGVGELVELQKQAIK 237
>gi|168213163|ref|ZP_02638788.1| ribonuclease PH [Clostridium perfringens CPE str. F4969]
gi|170715201|gb|EDT27383.1| ribonuclease PH [Clostridium perfringens CPE str. F4969]
Length = 248
Score = 185 bits (470), Expect = 3e-45, Method: Composition-based stats.
Identities = 113/241 (46%), Positives = 160/241 (66%), Gaps = 2/241 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR SGR++ Q+R + +TR +KYAEGS L++ GDT +L TA++EEKVP +++ + GWIT
Sbjct: 1 MRSSGRKKEQIRPVKITRNFTKYAEGSVLIEVGDTKVLCTASIEEKVPPFLKGSGEGWIT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEY MLPRST +R +R+ + GR+ EIQR+IGRALRS VD+ ALG + I IDCDV+Q
Sbjct: 61 AEYNMLPRSTQSRKQRDINKLKIDGRTMEIQRLIGRALRSAVDMKALGEKTIWIDCDVLQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRT +ITG++VAL D + + K ++ V+A+S G++ I+DL Y
Sbjct: 121 ADGGTRTTSITGSFVALVDAVNKLH--QKKPFNVYPIRHFVSAVSVGIVGEEKILDLCYE 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
ED VD N VMT+ G +E+QG+ E FS+ +LNLA+ +I+ QKD +
Sbjct: 179 EDHIAKVDMNVVMTEEGEFIEIQGTGEAGPFSRKELDELLNLAEKGAKQMIQAQKDALKT 238
Query: 241 E 241
+
Sbjct: 239 D 239
>gi|167036328|ref|YP_001671559.1| ribonuclease PH [Pseudomonas putida GB-1]
gi|189043769|sp|B0KQ94|RNPH_PSEPG RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|166862816|gb|ABZ01224.1| ribonuclease PH [Pseudomonas putida GB-1]
Length = 240
Score = 185 bits (470), Expect = 4e-45, Method: Composition-based stats.
Identities = 120/239 (50%), Positives = 166/239 (69%), Gaps = 1/239 (0%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R SGR +Q+R I +TR +K+AEGS LV+FGDT ++ T ++E VP +++ GW+TA
Sbjct: 3 RPSGRAADQLRSIRITRNYTKHAEGSVLVEFGDTKVICTVSVENGVPRFLKGQGQGWLTA 62
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
EYGMLPRSTG R +REA G+QGGR+ EIQR+IGR+LR+ +D+S LG + +DCDVIQA
Sbjct: 63 EYGMLPRSTGERNQREASRGKQGGRTLEIQRLIGRSLRAALDMSKLGDITLYVDCDVIQA 122
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
DGGTRTA+ITGA VAL D L ++ + LK +AA+S GM G ++DLDY E
Sbjct: 123 DGGTRTASITGAMVALCDALAVIKKRG-GLKAGNPLKHMIAAVSVGMYQGEAVLDLDYPE 181
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
DS + D N VMT +G +EVQG+AE A F + F AML LA+ + ++ +LQ+ +++
Sbjct: 182 DSAAETDLNVVMTSAGGFIEVQGTAEGAPFQPEDFNAMLALAQKGMNEIFELQQAALAD 240
>gi|18311236|ref|NP_563170.1| ribonuclease PH [Clostridium perfringens str. 13]
gi|168205082|ref|ZP_02631087.1| ribonuclease PH [Clostridium perfringens E str. JGS1987]
gi|168211260|ref|ZP_02636885.1| ribonuclease PH [Clostridium perfringens B str. ATCC 3626]
gi|168216782|ref|ZP_02642407.1| ribonuclease PH [Clostridium perfringens NCTC 8239]
gi|169347042|ref|ZP_02865984.1| ribonuclease PH [Clostridium perfringens C str. JGS1495]
gi|182625546|ref|ZP_02953317.1| ribonuclease PH [Clostridium perfringens D str. JGS1721]
gi|21759399|sp|Q8XI67|RNPH_CLOPE RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|18145919|dbj|BAB81960.1| ribonuclease PH [Clostridium perfringens str. 13]
gi|169296725|gb|EDS78854.1| ribonuclease PH [Clostridium perfringens C str. JGS1495]
gi|170663269|gb|EDT15952.1| ribonuclease PH [Clostridium perfringens E str. JGS1987]
gi|170710734|gb|EDT22916.1| ribonuclease PH [Clostridium perfringens B str. ATCC 3626]
gi|177909234|gb|EDT71699.1| ribonuclease PH [Clostridium perfringens D str. JGS1721]
gi|182381123|gb|EDT78602.1| ribonuclease PH [Clostridium perfringens NCTC 8239]
Length = 248
Score = 185 bits (470), Expect = 4e-45, Method: Composition-based stats.
Identities = 113/241 (46%), Positives = 160/241 (66%), Gaps = 2/241 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR SGR++ Q+R + +TR +KYAEGS L++ GDT +L TA++EEKVP +++ + GWIT
Sbjct: 1 MRSSGRKKEQIRPVKITRNFTKYAEGSVLIEVGDTKVLCTASIEEKVPPFLKGSGEGWIT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEY MLPRST +R +R+ + GR+ EIQR+IGRALRS VD+ ALG + I IDCDV+Q
Sbjct: 61 AEYNMLPRSTQSRKQRDINKLKIDGRTMEIQRLIGRALRSAVDMKALGEKTIWIDCDVLQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRT +ITG++VAL D + + K ++ V+A+S G++ I+DL Y
Sbjct: 121 ADGGTRTTSITGSFVALVDAVNKLH--QKKPFNVYPIRHFVSAVSVGIVGEEKILDLCYE 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
ED VD N VMT+ G +E+QG+ E FS+ +LNLA+ +I+ QKD +
Sbjct: 179 EDHVAKVDMNVVMTEEGEFIEIQGTGEAGPFSRKELDELLNLAEKGAKQMIQAQKDALKT 238
Query: 241 E 241
+
Sbjct: 239 D 239
>gi|205354664|ref|YP_002228465.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar
Gallinarum str. 287/91]
gi|226736934|sp|B5RG80|RNPH_SALG2 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|205274445|emb|CAR39477.1| RNase PH [Salmonella enterica subsp. enterica serovar Gallinarum
str. 287/91]
gi|326629803|gb|EGE36146.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar
Gallinarum str. 9]
Length = 238
Score = 185 bits (470), Expect = 4e-45, Method: Composition-based stats.
Identities = 125/240 (52%), Positives = 163/240 (67%), Gaps = 2/240 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR +GR NQ+R ++LTR +K+AEGS LV+FGDT +L TA++EE VP +++ GWIT
Sbjct: 1 MRPAGRSANQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWIT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPR+T R REA G+QGGR+ EIQR+I RALR+ VDL LG I +DCDVIQ
Sbjct: 61 AEYGMLPRATHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKTLGEFTITLDCDVIQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+ITGA VAL D L + + +KG VAA+S G++ G I DL+Y
Sbjct: 121 ADGGTRTASITGACVALADALNKLVAN--GKLKTNPMKGMVAAVSVGIVNGEAICDLEYV 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
EDS + D N VMT+ G I+EVQG+AE FS + +L+LA+ I ++ QK + N
Sbjct: 179 EDSAAETDMNVVMTEDGRIIEVQGTAEGEPFSHEELLTLLSLARGGIESIVATQKAALEN 238
>gi|119472968|ref|ZP_01614824.1| RNase PH (tRNA nucleotidyltransferase) [Alteromonadales bacterium
TW-7]
gi|119444637|gb|EAW25947.1| RNase PH (tRNA nucleotidyltransferase) [Alteromonadales bacterium
TW-7]
Length = 237
Score = 185 bits (470), Expect = 4e-45, Method: Composition-based stats.
Identities = 127/239 (53%), Positives = 160/239 (66%), Gaps = 2/239 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR S R NQ+R +S TR + +AEGS LV+FG+T +L TAT+E VP +++ GWI
Sbjct: 1 MRPSQRTPNQIRPVSFTRNYTLHAEGSVLVEFGNTKVLCTATVESGVPRFMKGQGKGWIN 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPRST R REA G+QGGR+ EIQR+I RALR+ VDL ALG I IDCDVIQ
Sbjct: 61 AEYGMLPRSTHTRNAREASRGKQGGRTMEIQRLIARALRAAVDLKALGENTITIDCDVIQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+I+GA VAL D L HM S LK +AAIS G+ G I DL+Y
Sbjct: 121 ADGGTRTASISGACVALVDALTHMRAK--GMINSNPLKHMIAAISVGIYKGQAISDLEYI 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
EDS + D N ++T++G I+EVQG+AE FS D +L LAK I ++I +QK ++
Sbjct: 179 EDSAAETDMNVILTETGKIIEVQGTAEGEPFSFDELDELLTLAKHSIREIIDVQKQALA 237
>gi|282865124|ref|ZP_06274177.1| ribonuclease PH [Streptomyces sp. ACTE]
gi|282560047|gb|EFB65596.1| ribonuclease PH [Streptomyces sp. ACTE]
Length = 245
Score = 185 bits (470), Expect = 4e-45, Method: Composition-based stats.
Identities = 115/241 (47%), Positives = 158/241 (65%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R+ GR Q+R +++ R SK+AEGS L+ FGDT + TA++ E VP W + + GW+TA
Sbjct: 3 RIDGRTPEQLRPVTIERGWSKHAEGSVLISFGDTKVFCTASVTEGVPRWRKGSGEGWVTA 62
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
EY MLPRST R RE+V G+ GGR+ EI R+IGR+LR+V+D ALG +++DCDV+QA
Sbjct: 63 EYSMLPRSTNTRGDRESVRGKIGGRTHEISRLIGRSLRAVIDYKALGENTVVLDCDVLQA 122
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
DGGTRTAAITGA+VAL D + + + L G VAA+S G++ G P++DL Y E
Sbjct: 123 DGGTRTAAITGAYVALADAVAWAQGKKIVKHGRKPLTGTVAAVSVGIVDGTPLLDLCYEE 182
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
D + D N V T G VEVQG+AE A F + A+L+LA DL KLQ++ ++
Sbjct: 183 DVRAETDMNVVCTGDGRFVEVQGTAEAAPFDRSELDALLDLATAGCVDLAKLQQEALART 242
Query: 242 V 242
+
Sbjct: 243 L 243
>gi|152978104|ref|YP_001343733.1| ribonuclease PH [Actinobacillus succinogenes 130Z]
gi|171472953|sp|A6VLF1|RNPH_ACTSZ RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|150839827|gb|ABR73798.1| ribonuclease PH [Actinobacillus succinogenes 130Z]
Length = 238
Score = 185 bits (470), Expect = 4e-45, Method: Composition-based stats.
Identities = 123/240 (51%), Positives = 166/240 (69%), Gaps = 2/240 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR + R NQ R I +TR +K+AEGS LV+FGDT +L TAT++E VP +++ GW+T
Sbjct: 1 MRPNNRAINQPRPIKITRHYTKHAEGSVLVEFGDTKVLCTATVDESVPRFLKGQGQGWVT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPRST +R++REA G+QGGR+ EIQR+I R+LR++VDL ALG R + +DCDVIQ
Sbjct: 61 AEYGMLPRSTHSRMQREAAKGKQGGRTMEIQRLIARSLRAMVDLEALGERSVTLDCDVIQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+ITGA VAL D + + D LKG VAAIS G++ G P+ DL+Y
Sbjct: 121 ADGGTRTASITGACVALIDAVNGLVDNGTLTVS--PLKGLVAAISVGIVDGTPVCDLEYV 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
EDS + D N VM + G ++EVQG+AE FS + +LNLAK + + Q+ +++
Sbjct: 179 EDSAAETDMNVVMMEDGRMIEVQGTAEGEPFSHEELLTLLNLAKQGCKRIFEAQRAALAD 238
>gi|110799614|ref|YP_696926.1| ribonuclease PH [Clostridium perfringens ATCC 13124]
gi|123344527|sp|Q0TN64|RNPH_CLOP1 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|110674261|gb|ABG83248.1| ribonuclease PH [Clostridium perfringens ATCC 13124]
Length = 248
Score = 185 bits (469), Expect = 4e-45, Method: Composition-based stats.
Identities = 113/241 (46%), Positives = 160/241 (66%), Gaps = 2/241 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR SGR++ Q+R + +TR +KYAEGS L++ GDT +L TA++EEKVP +++ + GWIT
Sbjct: 1 MRSSGRKKEQIRPVKITRNFTKYAEGSVLIEVGDTKVLCTASIEEKVPPFLKGSGEGWIT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEY MLPRST +R +RE + GR+ EIQR+IGRALRS VD+ ALG + I IDCDV+Q
Sbjct: 61 AEYNMLPRSTQSRKQREINKLKIDGRTMEIQRLIGRALRSAVDMKALGEKTIWIDCDVLQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRT +ITG++VAL D + + K ++ V+A+S G++ ++DL Y
Sbjct: 121 ADGGTRTTSITGSFVALVDAVNKLH--QKKPFNVYPIRHFVSAVSVGIVGEEKVLDLCYE 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
ED VD N VMT+ G +E+QG+ E FS+ +LNLA+ +I+ QKD +
Sbjct: 179 EDHVAKVDMNVVMTEEGEFIEIQGTGEAGPFSRKELDELLNLAEKGAKQMIQAQKDALKT 238
Query: 241 E 241
+
Sbjct: 239 D 239
>gi|83313597|ref|YP_423861.1| ribonuclease PH [Magnetospirillum magneticum AMB-1]
gi|82948438|dbj|BAE53302.1| RNase PH [Magnetospirillum magneticum AMB-1]
Length = 241
Score = 185 bits (469), Expect = 4e-45, Method: Composition-based stats.
Identities = 135/239 (56%), Positives = 171/239 (71%), Gaps = 2/239 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR SGR +Q+R + L VS++AEGSC+ KFGDTH+L TA++EEKVP ++RNT GW+T
Sbjct: 3 MRPSGRAPDQLRTVILETGVSRHAEGSCIAKFGDTHVLCTASVEEKVPPFLRNTGKGWVT 62
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPRST R REA G+Q GR+ EIQR+IGR+LRSV DL+A+G RQI IDCDV+Q
Sbjct: 63 AEYGMLPRSTHTRTDREAAKGKQSGRTHEIQRLIGRSLRSVTDLAAMGERQIKIDCDVLQ 122
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+ITGA+VALH Q + + L HVAAISCG+ G ++DLDY
Sbjct: 123 ADGGTRTASITGAFVALHLAFQRLVRLE--LLKAIPLTDHVAAISCGIYEGVAVLDLDYP 180
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
EDS DANFVMT +G IVE+QG+AE FS+ F + +LA+ I L++ QK +
Sbjct: 181 EDSNAQADANFVMTGTGGIVEIQGTAEERPFSRTQFLELTDLAEAGIRQLVEAQKKALG 239
>gi|290960058|ref|YP_003491240.1| ribonuclease [Streptomyces scabiei 87.22]
gi|260649584|emb|CBG72699.1| putative ribonuclease [Streptomyces scabiei 87.22]
Length = 245
Score = 185 bits (469), Expect = 5e-45, Method: Composition-based stats.
Identities = 114/237 (48%), Positives = 155/237 (65%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R+ GR Q+R +++ R SK+AEGS LV FGDT + TA++ E VP W + + GW+TA
Sbjct: 3 RIDGRTPEQLRPVTIERGWSKHAEGSVLVSFGDTKVFCTASVTEGVPRWRKGSGEGWVTA 62
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
EY MLPR+T R RE+V GR GGR+ EI R+IGR+LR+V+D ALG I++DCDV+QA
Sbjct: 63 EYSMLPRATNTRGDRESVRGRIGGRTHEISRLIGRSLRAVIDYKALGENTIVLDCDVLQA 122
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
DGGTRTAAITGA+VAL D + + Q L G V+A+S G++ G P++DL Y E
Sbjct: 123 DGGTRTAAITGAYVALADAVSWAQGRKLIKAGRQPLTGTVSAVSVGIVGGVPLLDLRYEE 182
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
D D D N V T G VEVQG+AE F+++ ++L+LA +L LQ+ +
Sbjct: 183 DVKADTDMNVVCTGDGRFVEVQGTAEAEPFAREELNSLLDLAVSGCTELALLQRKAL 239
>gi|184200648|ref|YP_001854855.1| ribonuclease PH [Kocuria rhizophila DC2201]
gi|183580878|dbj|BAG29349.1| ribonuclease PH [Kocuria rhizophila DC2201]
Length = 244
Score = 185 bits (469), Expect = 5e-45, Method: Composition-based stats.
Identities = 114/240 (47%), Positives = 161/240 (67%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR GR ++R I++TR S+ AEGS L++FG T +L TA+L E VP W++ GW+T
Sbjct: 1 MRADGRSVAELRPITITRGWSEQAEGSALIEFGGTRVLCTASLTEGVPRWLKGEGRGWVT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEY MLPR+T R RE+V G+ GGR+ EI R+IGR+LRS++DL ALG +++DCDV+Q
Sbjct: 61 AEYAMLPRATSTRSARESVKGKIGGRTHEISRLIGRSLRSIIDLEALGENTVVLDCDVLQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+ITGA+VAL + + D + L VAA+S G++ G P++DL Y
Sbjct: 121 ADGGTRTASITGAYVALAEAINWAHDNGVLKRRVNPLTDSVAAVSVGIIDGVPMLDLPYV 180
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
ED + D N V+T SG VEVQG+AE A F +D A+L+LA + L ++Q++ + +
Sbjct: 181 EDVRAETDMNVVVTGSGDFVEVQGTAEGAPFRRDELDALLDLAVAGCSQLAQIQRETLES 240
>gi|269103912|ref|ZP_06156609.1| ribonuclease PH [Photobacterium damselae subsp. damselae CIP
102761]
gi|268163810|gb|EEZ42306.1| ribonuclease PH [Photobacterium damselae subsp. damselae CIP
102761]
Length = 238
Score = 185 bits (469), Expect = 5e-45, Method: Composition-based stats.
Identities = 124/240 (51%), Positives = 167/240 (69%), Gaps = 2/240 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR SGR +Q+R I++TR+ + +AEGS LV+FG+T ++ TA++EE VP W++ GW+T
Sbjct: 1 MRPSGRSASQVRPITITRQFTAHAEGSVLVEFGNTKVICTASVEENVPRWLKGQGKGWVT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPR+T +R +REA SG+QGGR+ EIQR+I R+LR+ VDL LG + I +DCDVIQ
Sbjct: 61 AEYGMLPRATHSRNRREAASGKQGGRTMEIQRLIARSLRAAVDLEVLGEQMITVDCDVIQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+ITGA VAL D + LK VAA+S G+ G PI DL+Y
Sbjct: 121 ADGGTRTASITGAMVALVDAI--HYMLEKGMIKKNPLKTMVAAVSVGIYNGEPICDLEYL 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
EDS + D N VMT+ G ++E+QG+AE FS + AML LAK+ I ++I QK ++N
Sbjct: 179 EDSAAETDMNVVMTEEGKMIEIQGTAEGEAFSHEELLAMLALAKEGINEIIAQQKQALAN 238
>gi|304392746|ref|ZP_07374686.1| ribonuclease PH [Ahrensia sp. R2A130]
gi|303295376|gb|EFL89736.1| ribonuclease PH [Ahrensia sp. R2A130]
Length = 239
Score = 185 bits (469), Expect = 5e-45, Method: Composition-based stats.
Identities = 140/234 (59%), Positives = 179/234 (76%), Gaps = 2/234 (0%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R SGR ++MR +++ R SK+AEGSCL+KFGDTH+L TA+LEE+VP W+R GW+TA
Sbjct: 5 RPSGRAPDEMRAVTIERGFSKHAEGSCLIKFGDTHVLCTASLEERVPPWLRGAGKGWVTA 64
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
EYGMLPRSTG R++REA +G+Q GR+QEIQR+IGR+LR+VVD+ ALG RQI +DCDVIQA
Sbjct: 65 EYGMLPRSTGGRMRREASAGKQSGRTQEIQRLIGRSLRAVVDMKALGERQISLDCDVIQA 124
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
DGGTRTA+ITGA+VAL +CL M+ S + VAAISCG+ G P++DLDY E
Sbjct: 125 DGGTRTASITGAYVALKECLDWMQARSMIGGDVLIDN--VAAISCGIYEGTPVLDLDYDE 182
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
DS D DANFVMT G IVE+QG+AE A FS++ F A+++LA I +L+ LQ
Sbjct: 183 DSEADTDANFVMTGKGGIVEIQGTAEAAPFSREEFSALMDLASKGIGELVDLQN 236
>gi|296447435|ref|ZP_06889360.1| ribonuclease PH [Methylosinus trichosporium OB3b]
gi|296255055|gb|EFH02157.1| ribonuclease PH [Methylosinus trichosporium OB3b]
Length = 237
Score = 185 bits (469), Expect = 5e-45, Method: Composition-based stats.
Identities = 135/239 (56%), Positives = 175/239 (73%), Gaps = 2/239 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR S R ++MR +S R V++YAEGSCLVKFG+TH+L A+LE+K P W+R GW+T
Sbjct: 1 MRPSKRAPDEMRPVSFERGVARYAEGSCLVKFGNTHVLCAASLEDKPPPWLRGQGRGWVT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEY MLPR+T R +RE+ SG+ GR+QEIQR+IGR+LR+V L ALG RQ+++DCDV+Q
Sbjct: 61 AEYAMLPRATHTRTRRESSSGKPSGRTQEIQRLIGRSLRAVTHLPALGERQVVVDCDVLQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTAAI+GAW+ALHDC Q M S L+ HVAA+SCG+ P++DLDYG
Sbjct: 121 ADGGTRTAAISGAWLALHDCFQWMRSRS--IIKENPLRDHVAAVSCGVCDAGPVIDLDYG 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
EDST DANFV+T G +VEVQ +AE A F++ AML+LA+ I LI++QK I+
Sbjct: 179 EDSTAKTDANFVITGGGGLVEVQSTAEAAVFTEADLSAMLSLARAGIGKLIEMQKAAIA 237
>gi|206889521|ref|YP_002249186.1| ribonuclease PH [Thermodesulfovibrio yellowstonii DSM 11347]
gi|226736948|sp|B5YFY8|RNPH_THEYD RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|206741459|gb|ACI20516.1| ribonuclease PH [Thermodesulfovibrio yellowstonii DSM 11347]
Length = 236
Score = 185 bits (469), Expect = 5e-45, Method: Composition-based stats.
Identities = 113/235 (48%), Positives = 163/235 (69%), Gaps = 2/235 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR GR+ +++R I + + K A+GS L++ G+T ++ TA++E KVP ++++ K GWIT
Sbjct: 1 MRPDGRKNDELRPIKIEKNFIKNADGSVLIELGNTRVICTASIENKVPPFLKDQKKGWIT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPRST R+ RE+ SGR GGR+ EIQR+IGR LR+VVDL LG R I IDCDVI+
Sbjct: 61 AEYGMLPRSTPVRMLRESTSGRVGGRTHEIQRLIGRTLRAVVDLEKLGERTIWIDCDVIE 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+ITG ++AL + ++ + +K +AAIS G++ G P +DL Y
Sbjct: 121 ADGGTRTASITGGYIALVEAVKK--AMNAGMITENPIKDSIAAISVGIVLGEPRLDLCYA 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
EDS +VD N VMT SG +E+QG+AE FS+++ +L+LA+ I ++I++
Sbjct: 179 EDSQAEVDMNIVMTGSGKFIEIQGTAEIYPFSKENLLQLLSLAEKGIREIIRVIN 233
>gi|91784888|ref|YP_560094.1| ribonuclease PH [Burkholderia xenovorans LB400]
gi|122970210|sp|Q13V47|RNPH_BURXL RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|91688842|gb|ABE32042.1| RNAse PH [Burkholderia xenovorans LB400]
Length = 246
Score = 185 bits (469), Expect = 5e-45, Method: Composition-based stats.
Identities = 128/240 (53%), Positives = 167/240 (69%), Gaps = 2/240 (0%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R SGRQ +Q+R++ +TR +K+AEGS LV+FGDT ++ TA++ E VP ++R+ GW+TA
Sbjct: 7 RPSGRQADQLRDVRITRHYTKHAEGSVLVEFGDTKVICTASIAESVPSFLRDRGQGWLTA 66
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
EYGMLPR+T R REA G+Q GR+QEIQR+IGRALRSV DL LG+R + IDCDVIQA
Sbjct: 67 EYGMLPRATHTRSDREAARGKQTGRTQEIQRLIGRALRSVFDLEKLGARTLHIDCDVIQA 126
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
DGGTRTA+ITGA+VA HD + + + +VAAIS G+ G P++DLDY E
Sbjct: 127 DGGTRTASITGAFVAAHDAVARLLATGRIESS--PITDYVAAISVGVYDGLPVLDLDYDE 184
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
DS D D N VMT +G VE+QG+AE FS+D A+L+LA D I LI QK + +
Sbjct: 185 DSQCDTDMNVVMTGAGGFVEIQGTAEGVPFSRDEMNALLDLASDGINTLIAKQKAALEQK 244
>gi|295836838|ref|ZP_06823771.1| tRNA nucleotidyltransferase [Streptomyces sp. SPB74]
gi|197697479|gb|EDY44412.1| tRNA nucleotidyltransferase [Streptomyces sp. SPB74]
Length = 241
Score = 185 bits (469), Expect = 5e-45, Method: Composition-based stats.
Identities = 114/238 (47%), Positives = 154/238 (64%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R+ GR +Q+R +S+ R SK+AEGS LV FGDT +L TA+ E VP W + + GW+TA
Sbjct: 3 RIDGRTPDQLRPVSIERGWSKHAEGSVLVSFGDTRVLCTASFTEGVPRWRKGSGEGWVTA 62
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
EY MLPR+T R RE+V G+ GGR+ EI R+IGR+LR+VVD ALG +++DCDV+QA
Sbjct: 63 EYAMLPRATNTRGDRESVRGKIGGRTHEISRLIGRSLRAVVDTRALGENTVVLDCDVLQA 122
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
DGGTRTAAITGA+VAL D ++ + L+ V+A+S G++ P +DL Y E
Sbjct: 123 DGGTRTAAITGAYVALADAVRWAQGKKLVKAGRVPLRDTVSAVSVGIIDSVPYLDLRYEE 182
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
D + D N V T G VEVQG+AE A F + A+L+LA DL LQ++ +
Sbjct: 183 DVRAETDMNVVRTGDGRFVEVQGTAEAAPFDRAELDALLDLASAGCTDLAALQREALE 240
>gi|144897368|emb|CAM74232.1| RNase PH [Magnetospirillum gryphiswaldense MSR-1]
Length = 241
Score = 185 bits (469), Expect = 5e-45, Method: Composition-based stats.
Identities = 132/238 (55%), Positives = 171/238 (71%), Gaps = 2/238 (0%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R SGR +Q+R I L S++AEGSCL KFGDTH+L TA++EE+VP ++RNT GW+TA
Sbjct: 4 RPSGRAFDQLRVIRLETGFSRHAEGSCLAKFGDTHVLCTASVEERVPPFLRNTGKGWVTA 63
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
EYGMLPRST R REA G+Q GR+ EIQR+IGR+LR+V DL+A+G QI +DCDV+QA
Sbjct: 64 EYGMLPRSTHTRTDREAAKGKQSGRTHEIQRLIGRSLRAVTDLTAMGEMQIKLDCDVLQA 123
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
DGGTRTA+ITGAWVALH Q + + + + + VAAISCG+ G ++DLDY E
Sbjct: 124 DGGTRTASITGAWVALHLAFQKLVEAGKLSAVPLIDQ--VAAISCGIYEGQAVLDLDYPE 181
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
DS+ DANFV+T +G IVEVQG+AE FS+D F +L LA+ + +L LQK +
Sbjct: 182 DSSAQADANFVLTGTGGIVEVQGTAEERPFSRDQFTQLLELAEKGVTELALLQKKAVG 239
>gi|88797478|ref|ZP_01113067.1| ribonuclease PH [Reinekea sp. MED297]
gi|88779650|gb|EAR10836.1| ribonuclease PH [Reinekea sp. MED297]
Length = 239
Score = 185 bits (469), Expect = 5e-45, Method: Composition-based stats.
Identities = 116/240 (48%), Positives = 162/240 (67%), Gaps = 2/240 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR SGRQ +Q+RE++L R +K+AEGS LV FGDT ++ TA+++ VP +++ GW+T
Sbjct: 1 MRPSGRQTDQLREVTLQRHFTKHAEGSVLVSFGDTQVICTASVDSGVPRFMKGEGRGWVT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPR+TG+R +REA G+Q GR+ EI R+IGR+LR+ +D+ LG + IDCDVIQ
Sbjct: 61 AEYGMLPRATGSRNQREAARGKQTGRTVEIGRLIGRSLRAAIDMELLGENTVTIDCDVIQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+ITGA+VAL D + M +K +VAA+S G+ ++DLDY
Sbjct: 121 ADGGTRTASITGAFVALSDAINGMLAE--GTLKKNPIKHNVAAVSVGIWQDTAVLDLDYA 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
EDST + D N V+ +G VE+QG+AE F D AML+LA+ DL ++Q ++
Sbjct: 179 EDSTAETDLNVVLASNGGFVEIQGTAEGEPFMPDQLKAMLDLAEKGGRDLFEIQNRALTE 238
>gi|298293788|ref|YP_003695727.1| ribonuclease PH [Starkeya novella DSM 506]
gi|296930299|gb|ADH91108.1| ribonuclease PH [Starkeya novella DSM 506]
Length = 237
Score = 185 bits (469), Expect = 5e-45, Method: Composition-based stats.
Identities = 135/239 (56%), Positives = 176/239 (73%), Gaps = 2/239 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR S RQ ++MR +S R V ++AEGSCLVKFG+TH+L ATLEE++P W++ GW+T
Sbjct: 1 MRPSRRQPDEMRAVSFERGVLRHAEGSCLVKFGETHVLVAATLEERLPPWLKGQGRGWVT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPR+T R +RE +G+ GR+ EIQR+IGR+LR+VVDL LG RQI +DCDVIQ
Sbjct: 61 AEYGMLPRATHERTRREVTAGKPSGRTHEIQRLIGRSLRTVVDLEKLGERQITVDCDVIQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+ITGAW+ALHDCL M+ L+ H+AA+SCG++ G P +DLDY
Sbjct: 121 ADGGTRTASITGAWIALHDCLSWMKTRGMLAT--IPLRDHIAAVSCGIVDGEPRLDLDYV 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
EDS+ D NFVMT +G VE+QG+AE+ F++D F AML LA+ +A L+ LQK +S
Sbjct: 179 EDSSAHTDVNFVMTGTGGFVEIQGTAEKTPFTEDEFGAMLGLARKGVAKLVDLQKLAVS 237
>gi|302871436|ref|YP_003840072.1| ribonuclease PH [Caldicellulosiruptor obsidiansis OB47]
gi|302574295|gb|ADL42086.1| ribonuclease PH [Caldicellulosiruptor obsidiansis OB47]
Length = 258
Score = 185 bits (469), Expect = 5e-45, Method: Composition-based stats.
Identities = 115/241 (47%), Positives = 159/241 (65%), Gaps = 2/241 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR R N++R I +TR KYAEGSCL++ G+T ++ TAT+++KVP + + + GWIT
Sbjct: 1 MRQDQRAYNELRPIKITRNFIKYAEGSCLIEMGNTKVIVTATIDDKVPPFKKGSGEGWIT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEY MLPR+T R R+ R GRS EIQR+IGRALR+ ++ ALG R IIIDCDVIQ
Sbjct: 61 AEYSMLPRATQQRNVRDINKLRLSGRSHEIQRLIGRALRAGINFKALGERVIIIDCDVIQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+ITG ++A+ D + + D K + + VAA+S G+ G ++DL +
Sbjct: 121 ADGGTRTASITGGFIAMFDACKKLYDE--KIIENFPITDFVAAVSVGICDGVEMLDLCFE 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
EDS VD N VM D G +E+QG+AE A FS + F +L L K I +I++QK+V+
Sbjct: 179 EDSKAAVDMNLVMNDKGEFIEIQGTAEGAPFSWEQFQKLLELGKQGIQKIIEVQKEVLGQ 238
Query: 241 E 241
+
Sbjct: 239 D 239
>gi|260576117|ref|ZP_05844110.1| ribonuclease PH [Rhodobacter sp. SW2]
gi|259021597|gb|EEW24900.1| ribonuclease PH [Rhodobacter sp. SW2]
Length = 237
Score = 185 bits (469), Expect = 5e-45, Method: Composition-based stats.
Identities = 128/239 (53%), Positives = 171/239 (71%), Gaps = 2/239 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR SGR+ +MR I + V K+AEGSCL+K G+TH+L +AT+E+K P +++NT GW+T
Sbjct: 1 MRPSGRKLGEMRPIVIETGVMKHAEGSCLIKMGETHVLCSATIEDKAPPFLKNTGLGWVT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPR+T +R +REA +G+Q GR+QEIQR+IGRALR+ VD SALG RQI+IDCDV+Q
Sbjct: 61 AEYGMLPRATNSRNRREAAAGKQTGRTQEIQRLIGRALRAGVDRSALGERQIVIDCDVLQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTR A+ITG WVAL + + +S + HVAA+SCG+ G P++DLDY
Sbjct: 121 ADGGTRCASITGGWVALRLAMNKLLKA--GVIVSDPMIDHVAAVSCGIYAGQPVLDLDYA 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
EDS D NF++T G ++EVQ SAE ATFS+ +L+LA+ ADL+ QK +
Sbjct: 179 EDSAAGTDGNFILTGRGRLIEVQMSAEGATFSRAEMGELLDLAEAGAADLVAAQKAALG 237
>gi|28867317|ref|NP_789936.1| ribonuclease PH [Pseudomonas syringae pv. tomato str. DC3000]
gi|61216049|sp|Q88BE0|RNPH_PSESM RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|28850551|gb|AAO53631.1| ribonuclease PH [Pseudomonas syringae pv. tomato str. DC3000]
gi|331018562|gb|EGH98618.1| ribonuclease PH [Pseudomonas syringae pv. lachrymans str.
M302278PT]
Length = 240
Score = 185 bits (468), Expect = 5e-45, Method: Composition-based stats.
Identities = 119/239 (49%), Positives = 167/239 (69%), Gaps = 1/239 (0%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R SGR +Q+R I +TR +K+AEGS LV+FGDT ++ T ++E VP +++ GW+TA
Sbjct: 3 RPSGRAADQLRSIRITRNYTKHAEGSVLVEFGDTKVICTVSVENGVPRFLKGQGQGWLTA 62
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
EYGMLPR+TG R +REA G+QGGR+ EIQR+IGR+LR+ +D+S LG + +DCDVIQA
Sbjct: 63 EYGMLPRATGERNQREASRGKQGGRTLEIQRLIGRSLRAALDMSKLGDVTLYVDCDVIQA 122
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
DGGTRTA+ITGA VAL D L+ ++ + LK +AA+S GM G P++DLDY E
Sbjct: 123 DGGTRTASITGAMVALADALKVIKKRG-GLKGGDPLKQMIAAVSVGMYQGEPVLDLDYLE 181
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
DS + D N VMT +G +EVQG+AE A F + AML LA+ + +L ++Q+ +++
Sbjct: 182 DSAAETDLNVVMTSAGGFIEVQGTAEGAPFQPEELNAMLALAQKGMTELFEMQRAALAD 240
>gi|254389819|ref|ZP_05005043.1| ribonuclease PH [Streptomyces clavuligerus ATCC 27064]
gi|197703530|gb|EDY49342.1| ribonuclease PH [Streptomyces clavuligerus ATCC 27064]
Length = 246
Score = 185 bits (468), Expect = 6e-45, Method: Composition-based stats.
Identities = 118/241 (48%), Positives = 154/241 (63%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R+ GR Q+R +++ R SK+AEGS L+ FGDT + TA++ E VP W + + GW+T
Sbjct: 3 RIDGRTPEQLRPVTIERGWSKHAEGSVLISFGDTKVFCTASVTEGVPRWRKGSGEGWVTG 62
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
EY MLPRST R RE+V G+ GGR+ EI R+IGR+LR+VVD ALG I++DCDV+QA
Sbjct: 63 EYSMLPRSTNTRGDRESVRGKIGGRTHEISRLIGRSLRAVVDCKALGENTIVLDCDVLQA 122
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
DGGTRTAAITGA+VAL D + + Q L VAA+S G++ G P++DL Y E
Sbjct: 123 DGGTRTAAITGAYVALADAITWAREKKLVRAGRQPLTTTVAAVSVGIVDGTPLLDLCYEE 182
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
D D D N V T G VEVQG+AE F + A+L+LA ADL LQ D ++
Sbjct: 183 DVRADTDMNVVCTGDGRFVEVQGTAEAEPFDRAELDALLDLAAGGCADLAALQNDALART 242
Query: 242 V 242
V
Sbjct: 243 V 243
>gi|322383243|ref|ZP_08057054.1| ribonuclease PH-like protein [Paenibacillus larvae subsp. larvae
B-3650]
gi|321152512|gb|EFX45298.1| ribonuclease PH-like protein [Paenibacillus larvae subsp. larvae
B-3650]
Length = 251
Score = 185 bits (468), Expect = 6e-45, Method: Composition-based stats.
Identities = 117/239 (48%), Positives = 166/239 (69%), Gaps = 2/239 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR GRQ N++R + +T +K+AEGS L++ GDT ++ TAT+EE+VP +++N GW+T
Sbjct: 1 MRADGRQPNELRPVRITPNYNKHAEGSVLIEVGDTKVICTATIEERVPPFLKNEGKGWVT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEY MLPR+T R +REA G+ GGR+ EIQR+IGRALRSV++L ALG R I +DCDVIQ
Sbjct: 61 AEYSMLPRATQVRNQREASKGKLGGRTMEIQRLIGRALRSVINLEALGERSITLDCDVIQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRT +ITGA++A+ + + +K + ++A++S G++ G ++DL Y
Sbjct: 121 ADGGTRTTSITGAFIAMSLAI--HKLMEDKKITVNPITDYLASVSVGIVQGETLLDLMYT 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
EDS VD N VMT GH VEVQG+ E + FS+D ML LA++ I LI+LQ++ +
Sbjct: 179 EDSQAHVDMNVVMTGRGHFVEVQGTGEESPFSKDDLDRMLGLAEEGILRLIELQREALG 237
>gi|312134722|ref|YP_004002060.1| ribonuclease ph [Caldicellulosiruptor owensensis OL]
gi|311774773|gb|ADQ04260.1| ribonuclease PH [Caldicellulosiruptor owensensis OL]
Length = 258
Score = 185 bits (468), Expect = 6e-45, Method: Composition-based stats.
Identities = 116/241 (48%), Positives = 159/241 (65%), Gaps = 2/241 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR R N++R I +TR KYAEGSCL++ G+T ++ TAT+++KVP + + + GWIT
Sbjct: 1 MRQDQRGYNELRPIKITRNFIKYAEGSCLIEMGNTKVIVTATIDDKVPPFKKGSGEGWIT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEY MLPR+T R R+ R GRS EIQR+IGRALR+ ++ ALG R IIIDCDVIQ
Sbjct: 61 AEYSMLPRATQQRNVRDINKLRLSGRSHEIQRLIGRALRAGINFKALGERVIIIDCDVIQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+ITG ++A+ D + + D K + + VAA+S G+ G ++DL +
Sbjct: 121 ADGGTRTASITGGFIAMFDACKKLYDE--KIIENFPITDFVAAVSVGICDGVEMLDLCFE 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
EDS VD N VM D G +E+QG+AE A FS D F +L L K I +I++QK+V+
Sbjct: 179 EDSKAAVDMNLVMNDKGEFIEIQGTAEGAPFSWDQFQKLLELGKQGIQKIIEVQKEVLGQ 238
Query: 241 E 241
+
Sbjct: 239 D 239
>gi|163757816|ref|ZP_02164905.1| ribonuclease PH [Hoeflea phototrophica DFL-43]
gi|162285318|gb|EDQ35600.1| ribonuclease PH [Hoeflea phototrophica DFL-43]
Length = 238
Score = 185 bits (468), Expect = 6e-45, Method: Composition-based stats.
Identities = 152/239 (63%), Positives = 192/239 (80%), Gaps = 1/239 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR SGR+ +QMR +S R VSK+AEGSCLVKFGDTH+L TA+LEE+VP W+RN GW+T
Sbjct: 1 MRPSGRKTDQMRAVSFERGVSKHAEGSCLVKFGDTHVLCTASLEERVPPWLRNGGKGWVT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPRSTG+R++REA SG+QGGR+ EIQR+IGR+LR+VVDL ALG RQI +DCDVIQ
Sbjct: 61 AEYGMLPRSTGDRMRREATSGKQGGRTLEIQRLIGRSLRAVVDLPALGERQITVDCDVIQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTAAITGAW+ALHDCL+ ME+ S ++ +VLK HVAA+SCG+ G + DLDY
Sbjct: 121 ADGGTRTAAITGAWIALHDCLKWMEERSM-VKVERVLKDHVAAVSCGIFAGQAVTDLDYL 179
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
EDS+ + DANFVMT +G IVE+QG+AE F+++ ++ LAK I DL+ LQK ++
Sbjct: 180 EDSSAETDANFVMTGTGGIVEIQGTAEGEPFTEEQLGQLMGLAKAAINDLVALQKSAVA 238
>gi|110677820|ref|YP_680827.1| ribonuclease PH [Roseobacter denitrificans OCh 114]
gi|123362332|sp|Q16D02|RNPH_ROSDO RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|109453936|gb|ABG30141.1| ribonuclease PH [Roseobacter denitrificans OCh 114]
Length = 237
Score = 185 bits (468), Expect = 6e-45, Method: Composition-based stats.
Identities = 124/237 (52%), Positives = 169/237 (71%), Gaps = 2/237 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR SGR+ N+MR +S+ +K+AEGS L+K GDTH+L TAT+E++VP +I+ + GW+T
Sbjct: 1 MRPSGRELNEMRPVSIETGFTKHAEGSALIKIGDTHVLCTATIEDRVPPFIKGSGLGWVT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPR+T R++RE+ +G+QGGR+ EIQR+IGR+LR+ VD ALG RQI +DCDV+Q
Sbjct: 61 AEYGMLPRATNTRMRRESTAGKQGGRTVEIQRLIGRSLRAGVDRVALGERQITVDCDVLQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTR A+ITG WVAL + + + V VAAISCG+ G P++DLDY
Sbjct: 121 ADGGTRCASITGGWVALRLAVNKLMKAGDVISDPLV--DPVAAISCGIYAGQPVMDLDYP 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
EDS VD NF+MT S ++EVQ SAE ATFS+D +++LA+ + +L+ QK
Sbjct: 179 EDSEAGVDGNFIMTGSKQLIEVQMSAEGATFSRDQMNQLMDLAEKGVGELVAAQKAA 235
>gi|209883567|ref|YP_002287424.1| ribonuclease PH [Oligotropha carboxidovorans OM5]
gi|226736922|sp|B6JCH9|RNPH_OLICO RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|209871763|gb|ACI91559.1| ribonuclease PH [Oligotropha carboxidovorans OM5]
Length = 238
Score = 185 bits (468), Expect = 6e-45, Method: Composition-based stats.
Identities = 145/239 (60%), Positives = 184/239 (76%), Gaps = 1/239 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR SGR N++R +SL R V KYAEGSC+VKFGDT +L TATLEE++P W++ GW+T
Sbjct: 1 MRPSGRAPNELRPVSLERGVVKYAEGSCMVKFGDTRVLVTATLEERLPPWLKGQGRGWVT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPR+T RV+REA +G+Q GR+ EIQR+IGR+LR+ VDL ALG RQI IDCDVIQ
Sbjct: 61 AEYGMLPRATHERVRREASAGKQSGRTVEIQRLIGRSLRTTVDLVALGERQITIDCDVIQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+ITGAWVAL DCLQ M+ + + VL+ +VAAISCG+ G P++DLDY
Sbjct: 121 ADGGTRTASITGAWVALADCLQWMKARNMLKNDN-VLRDNVAAISCGIYNGTPVLDLDYA 179
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
EDS + DANFVMT G +VEVQG+AER FSQ+ F ++ LA++ I L++LQK ++
Sbjct: 180 EDSEAETDANFVMTGDGRLVEVQGTAERTPFSQEEFLQLMALAQNGIGRLVELQKIAMA 238
>gi|312877642|ref|ZP_07737599.1| ribonuclease PH [Caldicellulosiruptor lactoaceticus 6A]
gi|311795589|gb|EFR11961.1| ribonuclease PH [Caldicellulosiruptor lactoaceticus 6A]
Length = 258
Score = 185 bits (468), Expect = 6e-45, Method: Composition-based stats.
Identities = 114/241 (47%), Positives = 159/241 (65%), Gaps = 2/241 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR R +++R I +TR KYAEGSCL++ G+T ++ TAT+++KVP + + + GWIT
Sbjct: 1 MRQDQRAYDELRPIKITRNFIKYAEGSCLIEMGNTKVIVTATIDDKVPPFKKGSGEGWIT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEY MLPR+T R R+ R GRS EIQR+IGRALR+ ++ ALG R IIIDCDVIQ
Sbjct: 61 AEYSMLPRATQQRNVRDINKLRLSGRSHEIQRLIGRALRAGINFKALGERVIIIDCDVIQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+ITG ++A+ D + + D K + + VAA+S G+ G ++DL +
Sbjct: 121 ADGGTRTASITGGFIAMFDACKKLYDE--KIIENFPITDFVAAVSVGICDGVEMLDLCFE 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
EDS VD N VM D G +E+QG+AE A FS + F +L L K I +I++QK+V+
Sbjct: 179 EDSKAAVDMNLVMNDKGEFIEIQGTAEGAPFSWEQFQRLLELGKQGIQKIIEVQKEVLGE 238
Query: 241 E 241
+
Sbjct: 239 D 239
>gi|313501268|gb|ADR62634.1| Rph [Pseudomonas putida BIRD-1]
Length = 240
Score = 185 bits (468), Expect = 6e-45, Method: Composition-based stats.
Identities = 121/239 (50%), Positives = 166/239 (69%), Gaps = 1/239 (0%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R SGR +Q+R I +TR +K+AEGS LV+FGDT ++ T ++E VP +++ GW+TA
Sbjct: 3 RPSGRVADQLRSIRITRNYTKHAEGSVLVEFGDTKVICTVSVENGVPRFLKGQGQGWLTA 62
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
EYGMLPRSTG R +REA G+QGGR+ EIQR+IGR+LR+ +D+S LG + +DCDVIQA
Sbjct: 63 EYGMLPRSTGERNQREASRGKQGGRTLEIQRLIGRSLRAALDMSKLGDITLYVDCDVIQA 122
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
DGGTRTA+ITGA VAL D L ++ + LK +AA+S GM G ++DLDY E
Sbjct: 123 DGGTRTASITGAMVALCDALAVIKKRG-GLKGGNPLKHMIAAVSVGMYQGEAVLDLDYLE 181
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
DS + D N VMT +G +EVQG+AE A F + F AML LA+ I ++ +LQ+ +++
Sbjct: 182 DSAAETDLNVVMTSAGGFIEVQGTAEGAPFQPEDFNAMLALAQKGINEIFELQQAALAD 240
>gi|213970694|ref|ZP_03398819.1| ribonuclease ph rph [Pseudomonas syringae pv. tomato T1]
gi|213924528|gb|EEB58098.1| ribonuclease ph rph [Pseudomonas syringae pv. tomato T1]
Length = 262
Score = 185 bits (468), Expect = 6e-45, Method: Composition-based stats.
Identities = 119/239 (49%), Positives = 166/239 (69%), Gaps = 1/239 (0%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R SGR +Q+R I +TR +K+AEGS LV+FGDT ++ T ++E VP +++ GW+TA
Sbjct: 25 RPSGRAADQLRSIRITRNYTKHAEGSVLVEFGDTKVICTVSVENGVPRFLKGQGQGWLTA 84
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
EYGMLPR+TG R +REA G+QGGR+ EIQR+IGR+LR+ +D+S LG + +DCDVIQA
Sbjct: 85 EYGMLPRATGERNQREASRGKQGGRTLEIQRLIGRSLRAALDMSKLGDVTLYVDCDVIQA 144
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
DGGTRTA+ITGA VAL D L+ ++ + LK +AA S GM G P++DLDY E
Sbjct: 145 DGGTRTASITGAMVALADALKVIKKRG-GLKGGDPLKQMIAAASVGMYQGEPVLDLDYLE 203
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
DS + D N VMT +G +EVQG+AE A F + AML LA+ + +L ++Q+ +++
Sbjct: 204 DSAAETDLNVVMTSAGGFIEVQGTAEGAPFQPEELNAMLALAQKGMTELFEMQRAALAD 262
>gi|222528843|ref|YP_002572725.1| ribonuclease PH [Caldicellulosiruptor bescii DSM 6725]
gi|254808576|sp|B9MQJ8|RNPH_ANATD RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|222455690|gb|ACM59952.1| ribonuclease PH [Caldicellulosiruptor bescii DSM 6725]
Length = 258
Score = 185 bits (468), Expect = 6e-45, Method: Composition-based stats.
Identities = 115/241 (47%), Positives = 159/241 (65%), Gaps = 2/241 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR R N++R I +TR KYAEGSCL++ G+T ++ TAT+++KVP + + + GWIT
Sbjct: 1 MRQDQRAYNEIRPIKITRNFIKYAEGSCLIEMGNTKVIVTATIDDKVPPFKKGSGEGWIT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEY MLPR+T R R+ R GRS EIQR+IGRALR+ ++ ALG R IIIDCDVIQ
Sbjct: 61 AEYSMLPRATQQRNVRDINKLRLSGRSHEIQRLIGRALRAGINFKALGERVIIIDCDVIQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+ITG ++A+ D + + D K + + VAA+S G+ G ++DL +
Sbjct: 121 ADGGTRTASITGGFIAMFDACKKLYDE--KIIENFPVTDFVAAVSVGICDGVEMLDLCFE 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
EDS VD N VM D G +E+QG+AE A FS + F +L L K I +I++QK+V+
Sbjct: 179 EDSKAAVDMNLVMNDKGEFIEIQGTAEGAPFSWEQFQKLLELGKQGIQKIIEVQKEVLGQ 238
Query: 241 E 241
+
Sbjct: 239 D 239
>gi|29831713|ref|NP_826347.1| ribonuclease PH [Streptomyces avermitilis MA-4680]
gi|61216038|sp|Q82D17|RNPH_STRAW RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|29608829|dbj|BAC72882.1| putative ribonuclease PH [Streptomyces avermitilis MA-4680]
Length = 244
Score = 185 bits (468), Expect = 6e-45, Method: Composition-based stats.
Identities = 113/238 (47%), Positives = 153/238 (64%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R+ GR Q+R I++ R SK+AEGS LV FGDT + TA++ E VP W + + GW+TA
Sbjct: 3 RIDGRTPEQLRPITIERGWSKHAEGSVLVSFGDTKVFCTASVTEGVPRWRKGSGEGWVTA 62
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
EY MLPR+T R RE+V G+ GGR+ EI R+IGR+LR+V+D ALG I++DCDV+QA
Sbjct: 63 EYSMLPRATNTRGDRESVRGKIGGRTHEISRLIGRSLRAVIDYKALGENTIVLDCDVLQA 122
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
DGGTRTAAITGA+VAL D + + + L G V+A+S G++ G P++DL Y E
Sbjct: 123 DGGTRTAAITGAYVALADAVAWAQGRKLVKAGRKPLTGTVSAVSVGIVGGVPLLDLCYEE 182
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
D D D N V T G VEVQG+AE F + A+L+LA +L +Q+ +
Sbjct: 183 DVKADTDMNVVCTGDGRFVEVQGTAEAEPFDRKELNALLDLAVSGCDELAVIQRAALE 240
>gi|312963858|ref|ZP_07778329.1| ribonuclease PH [Pseudomonas fluorescens WH6]
gi|311281893|gb|EFQ60503.1| ribonuclease PH [Pseudomonas fluorescens WH6]
Length = 240
Score = 185 bits (468), Expect = 6e-45, Method: Composition-based stats.
Identities = 119/239 (49%), Positives = 164/239 (68%), Gaps = 1/239 (0%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R SGR +Q+R I +TR +K+AEGS LV+FGDT ++ T ++E VP +++ GW+TA
Sbjct: 3 RPSGRAADQLRSIRITRNYTKHAEGSVLVEFGDTKVICTVSVENGVPRFLKGQGQGWLTA 62
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
EYGMLPR+TG R +REA G+QGGR+ EIQR+IGR+LR+ +D+S LG + +DCDVIQA
Sbjct: 63 EYGMLPRATGERNQREASRGKQGGRTLEIQRLIGRSLRAALDMSKLGDVTLYVDCDVIQA 122
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
DGGTRTA+ITGA VAL D L+ ++ + LK +AA+S GM G P++DLDY E
Sbjct: 123 DGGTRTASITGAMVALVDALKVIKKRG-GLKGGDPLKQMIAAVSVGMYQGEPVLDLDYLE 181
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
DS + D N VMT +G +EVQG+AE A F AML LA+ + ++ LQ +++
Sbjct: 182 DSAAETDLNVVMTSTGGFIEVQGTAEGAPFQPAELNAMLALAQKGMTEIFALQNAALAD 240
>gi|164686704|ref|ZP_02210732.1| hypothetical protein CLOBAR_00299 [Clostridium bartlettii DSM
16795]
gi|164604094|gb|EDQ97559.1| hypothetical protein CLOBAR_00299 [Clostridium bartlettii DSM
16795]
Length = 449
Score = 185 bits (468), Expect = 6e-45, Method: Composition-based stats.
Identities = 117/239 (48%), Positives = 159/239 (66%), Gaps = 2/239 (0%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R+ GR+ +Q+R++ +TR +KYAEGS ++ GDT +L A++E+KVP ++RNT GWI A
Sbjct: 3 RIDGREFDQIRDLKITRNYTKYAEGSVFIEMGDTKVLCNASIEDKVPPFLRNTGTGWINA 62
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
EY MLPRST R R+A G+ GRSQEIQR+IGRA+RSVVDL LG R I IDCDVIQA
Sbjct: 63 EYSMLPRSTQQRKIRDASRGKIDGRSQEIQRLIGRAIRSVVDLDKLGERTIWIDCDVIQA 122
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
DGGTRTA+ITGA+VA+ D + + K ++ V+AIS G++ G ++DL Y E
Sbjct: 123 DGGTRTASITGAFVAVLDAINKLHKE--KAIKHMPVRNFVSAISVGIVNGEYLLDLCYEE 180
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
DS VD N +MTD G VE+QG+ E FS+ +L L + L+K Q++ +
Sbjct: 181 DSNAQVDMNIIMTDKGEFVELQGTGEECPFSRKDLEKLLELGEKGNKMLLKAQREALGE 239
>gi|254362020|ref|ZP_04978149.1| tRNA nucleotidyltransferase [Mannheimia haemolytica PHL213]
gi|153093571|gb|EDN74545.1| tRNA nucleotidyltransferase [Mannheimia haemolytica PHL213]
Length = 238
Score = 185 bits (468), Expect = 6e-45, Method: Composition-based stats.
Identities = 121/240 (50%), Positives = 168/240 (70%), Gaps = 2/240 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR + R NQ+REI +TR ++YAEGS L++FG+T +L AT+EE VP +++ + GW+T
Sbjct: 1 MRPNNRANNQVREIKITRNYTRYAEGSVLIEFGETKVLCNATVEESVPRFLKGQQQGWVT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPR+T +R +REA G+QGGR+ EIQR+I R+LR+VVDL ALG R + +DCDVIQ
Sbjct: 61 AEYGMLPRATHSRTQREAAKGKQGGRTMEIQRLIARSLRAVVDLKALGERTVTVDCDVIQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+ITGA VAL+D + + + +KG VAAIS G++ G + DL+Y
Sbjct: 121 ADGGTRTASITGACVALYDAMNKLVAN--GTLKTNPMKGLVAAISVGIVAGEAVCDLEYL 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
EDS + D N VM + G +VEVQG+AE FS +L+LAK I+ L++ Q+ ++
Sbjct: 179 EDSNAETDMNVVMVEDGRLVEVQGTAEGEPFSHQELLTLLDLAKQGISQLVEAQRKALAE 238
>gi|229593356|ref|YP_002875475.1| ribonuclease PH [Pseudomonas fluorescens SBW25]
gi|259494125|sp|C3K479|RNPH_PSEFS RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|229365222|emb|CAY53520.1| ribonuclease PH [Pseudomonas fluorescens SBW25]
Length = 240
Score = 185 bits (468), Expect = 6e-45, Method: Composition-based stats.
Identities = 119/239 (49%), Positives = 165/239 (69%), Gaps = 1/239 (0%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R SGR +Q+R I +TR +K+AEGS LV+FGDT ++ T ++E VP +++ GW+TA
Sbjct: 3 RPSGRAADQLRSIRITRNYTKHAEGSVLVEFGDTKVICTVSVENGVPRFLKGQGQGWLTA 62
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
EYGMLPR+TG R +REA G+QGGR+ EIQR+IGR+LR+ +D+S LG + +DCDVIQA
Sbjct: 63 EYGMLPRATGERNQREASRGKQGGRTLEIQRLIGRSLRAALDMSKLGDVTLYVDCDVIQA 122
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
DGGTRTA+ITGA VAL D L+ ++ + LK +AA+S GM G P++DLDY E
Sbjct: 123 DGGTRTASITGAMVALVDALKVIKKRG-GLKAGDPLKQMIAAVSVGMYQGEPVLDLDYLE 181
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
DS + D N VMT +G +EVQG+AE A F AML LA+ + ++ +LQ +++
Sbjct: 182 DSAAETDLNVVMTSTGGFIEVQGTAEGAPFQPADLNAMLALAQKGMTEIFELQNAALAD 240
>gi|163745104|ref|ZP_02152464.1| ribonuclease PH [Oceanibulbus indolifex HEL-45]
gi|161381922|gb|EDQ06331.1| ribonuclease PH [Oceanibulbus indolifex HEL-45]
Length = 237
Score = 185 bits (468), Expect = 7e-45, Method: Composition-based stats.
Identities = 122/237 (51%), Positives = 171/237 (72%), Gaps = 2/237 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR SGR+ ++MR +S+ +K+AEGS L+K GDTH+L TAT+E++VP +I+ + GW+T
Sbjct: 1 MRPSGRKLDEMRAVSIETGFTKHAEGSALIKMGDTHVLCTATIEDRVPPFIKGSGLGWVT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPR+T R++REA G+QGGR+ EIQR+IGRALR+ VD SALG RQI +DCDV+Q
Sbjct: 61 AEYGMLPRATNTRMRREAALGKQGGRTVEIQRLIGRALRAGVDRSALGERQITVDCDVLQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTR A+ITG W+AL + + + V VAA+SCG+ G P++DLDY
Sbjct: 121 ADGGTRCASITGGWIALRLAVNKLMKAGDVVSDPLV--DPVAAVSCGIYAGQPLLDLDYP 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
EDS VD NF+MT SG ++E+Q SAE +T+++D +++LA+ + +L +QK V
Sbjct: 179 EDSEAGVDGNFIMTGSGKLIEIQMSAEGSTYTRDQMNQLMDLAEKGVGELAAIQKSV 235
>gi|312794043|ref|YP_004026966.1| ribonuclease ph [Caldicellulosiruptor kristjanssonii 177R1B]
gi|312181183|gb|ADQ41353.1| ribonuclease PH [Caldicellulosiruptor kristjanssonii 177R1B]
Length = 258
Score = 185 bits (468), Expect = 7e-45, Method: Composition-based stats.
Identities = 115/241 (47%), Positives = 159/241 (65%), Gaps = 2/241 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR R N++R I +TR KYAEGSCL++ G+T ++ TAT+++KVP + + + GWIT
Sbjct: 1 MRQDQRAYNELRPIKITRNFIKYAEGSCLIEMGNTKVIVTATIDDKVPPFKKGSGEGWIT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEY MLPR+T R R+ R GRS EIQR+IGRALR+ ++ ALG R IIIDCDVIQ
Sbjct: 61 AEYSMLPRATQQRNVRDINKLRLSGRSHEIQRLIGRALRAGINFKALGERVIIIDCDVIQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+ITG ++A+ D + + D K + + VAA+S G+ G ++DL +
Sbjct: 121 ADGGTRTASITGGFIAMFDACKKLYDE--KIIENFPITDFVAAVSVGICDGVEMLDLCFE 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
EDS VD N VM D G +E+QG+AE A FS + F +L L K I +I++QK+V+
Sbjct: 179 EDSKAAVDMNLVMNDKGEFIEIQGTAEGAPFSWEQFQRLLELGKQGIQKIIEVQKEVLGE 238
Query: 241 E 241
+
Sbjct: 239 D 239
>gi|89076053|ref|ZP_01162413.1| putative ribonuclease PH [Photobacterium sp. SKA34]
gi|89048205|gb|EAR53787.1| putative ribonuclease PH [Photobacterium sp. SKA34]
Length = 238
Score = 184 bits (467), Expect = 7e-45, Method: Composition-based stats.
Identities = 126/240 (52%), Positives = 169/240 (70%), Gaps = 2/240 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR SGR Q+R I++TR+ + +AEGS LV+FG+T ++ TA++EE VP W++ GW+T
Sbjct: 1 MRPSGRSATQVRPITITRQYTAHAEGSVLVEFGNTKVICTASVEENVPRWLKGKGQGWVT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPR+T R +REA SG+QGGR+ EIQR+I R+LR+ VDL LG + I +DCDVIQ
Sbjct: 61 AEYGMLPRATHTRNRREAASGKQGGRTMEIQRLIARSLRAAVDLKILGEQMITVDCDVIQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+ITGA VAL D + +M + + LK VAA+S G+ G P DL+Y
Sbjct: 121 ADGGTRTASITGAMVALVDAINYMLENGMIKKS--PLKSMVAAVSVGIYKGEPTCDLEYL 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
EDS + D N VMT+ G ++E+QG+AE FS + AML LAKD I+D+I +QK + N
Sbjct: 179 EDSAAETDMNVVMTEEGKMIEIQGTAEGEAFSHEELLAMLALAKDGISDIISMQKKALEN 238
>gi|299133261|ref|ZP_07026456.1| ribonuclease PH [Afipia sp. 1NLS2]
gi|298593398|gb|EFI53598.1| ribonuclease PH [Afipia sp. 1NLS2]
Length = 238
Score = 184 bits (467), Expect = 8e-45, Method: Composition-based stats.
Identities = 144/239 (60%), Positives = 185/239 (77%), Gaps = 1/239 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR SGR +++R +SL R V KYAEGSC+VKFGDTH+L TATLEE++P W++ GW+T
Sbjct: 1 MRPSGRAPDELRPVSLERGVVKYAEGSCMVKFGDTHVLVTATLEERLPPWLKGQGRGWVT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPR+T +RV+REA +G+Q GR+ EIQR+IGR+LR+ VDL ALG RQI +DCDVIQ
Sbjct: 61 AEYGMLPRATHDRVRREASAGKQSGRTVEIQRLIGRSLRTTVDLVALGERQITVDCDVIQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+ITGAWVAL DCLQ M+ + + VL+ +VAAISCG+ G P++DLDY
Sbjct: 121 ADGGTRTASITGAWVALADCLQWMKARNMLKNDN-VLRDNVAAISCGIHNGTPVLDLDYA 179
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
EDS + DANFVMT G +VEVQG+AER FSQD F ++ LA+ + L++LQK ++
Sbjct: 180 EDSEAETDANFVMTGDGRLVEVQGTAERTPFSQDEFLKLMALAQSGVGRLVELQKIAMA 238
>gi|188579737|ref|YP_001923182.1| ribonuclease PH [Methylobacterium populi BJ001]
gi|226736916|sp|B1ZJ73|RNPH_METPB RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|179343235|gb|ACB78647.1| ribonuclease PH [Methylobacterium populi BJ001]
Length = 237
Score = 184 bits (467), Expect = 8e-45, Method: Composition-based stats.
Identities = 138/239 (57%), Positives = 175/239 (73%), Gaps = 2/239 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR S R + MR+++L R V++YAEGSCLV FG+T +L TA+LEE+ P W+R + GW+T
Sbjct: 1 MRPSKRAADAMRDVTLERAVARYAEGSCLVTFGNTRVLCTASLEERGPPWLRGSGKGWVT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEY MLPR+T R +RE SG+ GR+QEIQR+IGR+LR+V +L ALG RQI +DCDVIQ
Sbjct: 61 AEYAMLPRATHERTRREVNSGKPSGRTQEIQRLIGRSLRAVTNLPALGERQITVDCDVIQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+ITGAWVALHDC M S LK HVAA+SCG+ G P++DLDY
Sbjct: 121 ADGGTRTASITGAWVALHDCFAWMRARS--IISVDPLKDHVAAVSCGIYKGQPVLDLDYA 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
EDS + DANFV+T G IVEVQG+AE FS+ F +L LAK IA+L++LQ+ I+
Sbjct: 179 EDSAAETDANFVVTGKGGIVEVQGTAEMEPFSEAQFIELLALAKGGIANLVELQRKAIA 237
>gi|319651759|ref|ZP_08005885.1| ribonuclease PH [Bacillus sp. 2_A_57_CT2]
gi|317396578|gb|EFV77290.1| ribonuclease PH [Bacillus sp. 2_A_57_CT2]
Length = 256
Score = 184 bits (467), Expect = 8e-45, Method: Composition-based stats.
Identities = 110/242 (45%), Positives = 151/242 (62%), Gaps = 1/242 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR GR+ Q+R I + K+ EGS L+ GDT ++ TA+++E+VP ++R GWIT
Sbjct: 1 MRADGREPKQLRPIHIESDYLKHPEGSVLITVGDTKVICTASIDERVPPFMRGQGKGWIT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEY MLPR+T R RE+ G+ GR+ EIQR+IGRALR+VVDL ALG R + +DCDVIQ
Sbjct: 61 AEYSMLPRATEQRNIRESAKGKISGRTMEIQRLIGRALRAVVDLDALGERTVWLDCDVIQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+ITGA+VA+ + + K + A + VDL+Y
Sbjct: 121 ADGGTRTASITGAFVAMSQAMDKLYSSK-KLAHYPINDFLAATSVGILKNKQAAVDLNYI 179
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
EDS+ +VD N VMT SG VE+QG+ E ATFS ML A++ I++L + QK +
Sbjct: 180 EDSSAEVDMNVVMTGSGEFVELQGTGEEATFSYTQLQEMLGAAQEGISELFEFQKAALGE 239
Query: 241 EV 242
++
Sbjct: 240 KI 241
>gi|187925061|ref|YP_001896703.1| ribonuclease PH [Burkholderia phytofirmans PsJN]
gi|226736896|sp|B2T6B5|RNPH_BURPP RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|187716255|gb|ACD17479.1| ribonuclease PH [Burkholderia phytofirmans PsJN]
Length = 246
Score = 184 bits (467), Expect = 8e-45, Method: Composition-based stats.
Identities = 129/240 (53%), Positives = 167/240 (69%), Gaps = 2/240 (0%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R SGRQ NQ+R++ +TR +K+AEGS LV+FGDT ++ TA++ E VP ++R+ GW+TA
Sbjct: 7 RPSGRQANQLRDVRITRHYTKHAEGSVLVEFGDTKVICTASIAESVPSFLRDRGQGWLTA 66
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
EYGMLPR+T R REA G+Q GR+QEIQR+IGRALRSV DL LG+R + IDCDVIQA
Sbjct: 67 EYGMLPRATHTRSDREAARGKQTGRTQEIQRLIGRALRSVFDLEKLGARTLHIDCDVIQA 126
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
DGGTRTA+ITGA+VA HD + + + +VAAIS G+ G P++DLDY E
Sbjct: 127 DGGTRTASITGAFVAAHDAVAKLLATGRIESS--PITDYVAAISVGVYDGLPVLDLDYDE 184
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
DS D D N VMT +G VE+QG+AE FS+D A+L+LA D I LI QK + +
Sbjct: 185 DSQCDTDMNVVMTGAGGFVEIQGTAEGVAFSRDEMNALLDLASDGINTLIAKQKAALEQK 244
>gi|294812846|ref|ZP_06771489.1| Ribonuclease PH [Streptomyces clavuligerus ATCC 27064]
gi|326441376|ref|ZP_08216110.1| ribonuclease PH [Streptomyces clavuligerus ATCC 27064]
gi|294325445|gb|EFG07088.1| Ribonuclease PH [Streptomyces clavuligerus ATCC 27064]
Length = 248
Score = 184 bits (467), Expect = 8e-45, Method: Composition-based stats.
Identities = 118/241 (48%), Positives = 154/241 (63%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R+ GR Q+R +++ R SK+AEGS L+ FGDT + TA++ E VP W + + GW+T
Sbjct: 5 RIDGRTPEQLRPVTIERGWSKHAEGSVLISFGDTKVFCTASVTEGVPRWRKGSGEGWVTG 64
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
EY MLPRST R RE+V G+ GGR+ EI R+IGR+LR+VVD ALG I++DCDV+QA
Sbjct: 65 EYSMLPRSTNTRGDRESVRGKIGGRTHEISRLIGRSLRAVVDCKALGENTIVLDCDVLQA 124
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
DGGTRTAAITGA+VAL D + + Q L VAA+S G++ G P++DL Y E
Sbjct: 125 DGGTRTAAITGAYVALADAITWAREKKLVRAGRQPLTTTVAAVSVGIVDGTPLLDLCYEE 184
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
D D D N V T G VEVQG+AE F + A+L+LA ADL LQ D ++
Sbjct: 185 DVRADTDMNVVCTGDGRFVEVQGTAEAEPFDRAELDALLDLAAGGCADLAALQNDALART 244
Query: 242 V 242
V
Sbjct: 245 V 245
>gi|259418160|ref|ZP_05742079.1| ribonuclease PH [Silicibacter sp. TrichCH4B]
gi|259347066|gb|EEW58880.1| ribonuclease PH [Silicibacter sp. TrichCH4B]
Length = 237
Score = 184 bits (467), Expect = 9e-45, Method: Composition-based stats.
Identities = 126/237 (53%), Positives = 168/237 (70%), Gaps = 2/237 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR SGR N+MR +S+ +K+AEGSCL+K GDTH+L TAT+E++VP +I+ + GW+T
Sbjct: 1 MRPSGRALNEMRSVSIETGFTKHAEGSCLIKMGDTHVLCTATIEDRVPPFIKGSGLGWVT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPR+T R++REA SG+QGGR+ EIQR+IGRALR+ VD ALG RQI +DCDV+Q
Sbjct: 61 AEYGMLPRATNTRMRREAASGKQGGRTVEIQRLIGRALRAGVDRVALGERQITVDCDVLQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTR A+ITG WVAL + + L V+AISCG+ G P++DLDY
Sbjct: 121 ADGGTRCASITGGWVALRLAVNKLMKA--GDVTMDPLVDPVSAISCGIYAGQPVLDLDYP 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
EDS VD NF+MT SG ++EVQ SAE + FS+D +++LA ++L ++QK
Sbjct: 179 EDSEAGVDGNFIMTGSGKLIEVQMSAEGSVFSRDQMNELMDLATKGTSELAEMQKAA 235
>gi|21759411|sp|Q9AES0|RNPH_PASHA RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|13591380|gb|AAK29744.1| ribonuclease PH-like protein [Mannheimia haemolytica]
Length = 238
Score = 184 bits (467), Expect = 9e-45, Method: Composition-based stats.
Identities = 121/240 (50%), Positives = 167/240 (69%), Gaps = 2/240 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR + R NQ+REI +TR ++YAEGS L++FG+T +L AT+EE VP +++ + GW+T
Sbjct: 1 MRPNNRANNQVREIKITRNYTRYAEGSVLIEFGETKVLCNATVEESVPRFLKGQQQGWVT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPR+T +R +REA G+QGGR+ EIQR+I R+LR+VVDL ALG R + +DCDVIQ
Sbjct: 61 AEYGMLPRATHSRTQREAAKGKQGGRTMEIQRLIARSLRAVVDLKALGERTVTVDCDVIQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+ITGA VAL+D + + + +KG VAAIS G++ G + DL+Y
Sbjct: 121 ADGGTRTASITGACVALYDAMNKLVAN--GTLKTNPMKGLVAAISVGIVAGEAVCDLEYL 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
EDS + D N VM G +VEVQG+AE FS +L+LAK I+ L++ Q+ ++
Sbjct: 179 EDSNAETDMNVVMVQDGRLVEVQGTAEGEPFSHQELLTLLDLAKQGISQLVEAQRKALAE 238
>gi|311896220|dbj|BAJ28628.1| putative ribonuclease PH [Kitasatospora setae KM-6054]
Length = 241
Score = 184 bits (466), Expect = 9e-45, Method: Composition-based stats.
Identities = 111/238 (46%), Positives = 156/238 (65%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R+ GR +Q+R +++ R SK+AEGS LV +GDT +L TA++ E VP W + + GW+TA
Sbjct: 3 RIDGRTPDQLRPVTIERNWSKHAEGSVLVSYGDTKVLCTASVTEGVPRWRKGSGEGWVTA 62
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
EY MLPR+T R RE+V G+ GGR+ EI R+IGR+LR+V+D AL I++DCDV+QA
Sbjct: 63 EYAMLPRATNTRGDRESVRGKIGGRTHEISRLIGRSLRAVIDHRALAENTIVLDCDVLQA 122
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
DGGTRTAAITGA+VAL D + + Q + G V+A+S G++ G P++DL Y E
Sbjct: 123 DGGTRTAAITGAYVALVDAVSWAREKKLLRAKGQPITGGVSAVSVGIIDGVPMLDLRYEE 182
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
D + D N V T G VEVQG+AE A F +D +L+L A+L ++Q+ +
Sbjct: 183 DVRAETDMNIVCTSDGRFVEVQGTAEGAPFDRDLLNQLLDLGSLGCAELDEIQRKALE 240
>gi|148981863|ref|ZP_01816548.1| ribonuclease PH [Vibrionales bacterium SWAT-3]
gi|145960714|gb|EDK26055.1| ribonuclease PH [Vibrionales bacterium SWAT-3]
Length = 238
Score = 184 bits (466), Expect = 9e-45, Method: Composition-based stats.
Identities = 120/240 (50%), Positives = 166/240 (69%), Gaps = 2/240 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR + R +Q+R I +TR + YAEGS LV+FG+T +L AT+EE VP W++ GW+T
Sbjct: 1 MRPNDRAVDQIRPIKITRNYTAYAEGSVLVEFGNTKVLCNATVEENVPRWLKGQGKGWVT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPR+T R +REA SG+QGGR+ EIQR+I R+LR+VVDL A+G I +DCDVIQ
Sbjct: 61 AEYGMLPRATHTRNRREAASGKQGGRTMEIQRLIARSLRAVVDLKAMGEIMITVDCDVIQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+I+GA VA+ D ++ + D +KGHVAA+S G++ + DL+Y
Sbjct: 121 ADGGTRTASISGASVAMADAIKSLIDS--GKLKKNPMKGHVAAVSVGIVGAEALCDLEYV 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
EDS D D N VMT+ G ++E+QG+AE FS + +L LA IAD+++ QK +++
Sbjct: 179 EDSAADTDMNVVMTEDGKMIEIQGTAEGEPFSHEELMKLLALANKGIADIVEAQKAALAD 238
>gi|330719753|gb|EGG98274.1| Ribonuclease PH [gamma proteobacterium IMCC2047]
Length = 238
Score = 184 bits (466), Expect = 9e-45, Method: Composition-based stats.
Identities = 126/240 (52%), Positives = 168/240 (70%), Gaps = 2/240 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR SGR +Q+RE+ +TR +K+AEGS LV+FGDT ++ TAT E VP ++R GW+T
Sbjct: 1 MRPSGRTPDQLREVKITRNYTKHAEGSVLVEFGDTKVICTATAETGVPHFLRGKGVGWVT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPRSTG+R+ REA G+QGGR+ EIQR+IGR+LR+ +D+ LG I+IDCDVIQ
Sbjct: 61 AEYGMLPRSTGSRMGREAARGKQGGRTVEIQRLIGRSLRAAIDMKKLGENTIVIDCDVIQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+ITGA VAL D + + + +K +AA+S G+ G P++DLDY
Sbjct: 121 ADGGTRTASITGACVALVDAVNSLRSK--GAIKADPIKHRIAAVSVGIYNGTPVLDLDYA 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
EDS + D N +MTDSG VEVQG+AE+ FS ML LA+ IA+L +LQ+ ++
Sbjct: 179 EDSNAETDLNLIMTDSGGFVEVQGTAEQEPFSATELADMLKLAELGIANLSELQQQALAE 238
>gi|261491672|ref|ZP_05988254.1| tRNA nucleotidyltransferase [Mannheimia haemolytica serotype A2
str. BOVINE]
gi|261494209|ref|ZP_05990709.1| tRNA nucleotidyltransferase [Mannheimia haemolytica serotype A2
str. OVINE]
gi|261310112|gb|EEY11315.1| tRNA nucleotidyltransferase [Mannheimia haemolytica serotype A2
str. OVINE]
gi|261312687|gb|EEY13808.1| tRNA nucleotidyltransferase [Mannheimia haemolytica serotype A2
str. BOVINE]
Length = 238
Score = 184 bits (466), Expect = 9e-45, Method: Composition-based stats.
Identities = 121/240 (50%), Positives = 168/240 (70%), Gaps = 2/240 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR + R NQ+REI +TR ++YAEGS L++FG+T +L AT+EE VP +++ + GW+T
Sbjct: 1 MRPNNRANNQVREIKITRNYTRYAEGSVLIEFGETKVLCNATVEESVPRFLKGQQQGWVT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPR+T +R +REA G+QGGR+ EIQR+I R+LR+VVDL ALG R + +DCDVIQ
Sbjct: 61 AEYGMLPRATHSRTQREAAKGKQGGRTMEIQRLIARSLRAVVDLKALGERTVTVDCDVIQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+ITGA VAL+D + + + +KG VAAIS G++ G + DL+Y
Sbjct: 121 ADGGTRTASITGACVALYDAMNKLVAD--GTLKTNPMKGLVAAISVGIVAGEAVCDLEYL 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
EDS + D N VM + G +VEVQG+AE FS +L+LAK I+ L++ Q+ ++
Sbjct: 179 EDSNAETDMNVVMVEDGRLVEVQGTAEGEPFSHQELLTLLDLAKQGISQLVEAQRKALAE 238
>gi|260429579|ref|ZP_05783556.1| ribonuclease PH [Citreicella sp. SE45]
gi|260420202|gb|EEX13455.1| ribonuclease PH [Citreicella sp. SE45]
Length = 296
Score = 184 bits (466), Expect = 1e-44, Method: Composition-based stats.
Identities = 127/239 (53%), Positives = 172/239 (71%), Gaps = 2/239 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR SGR ++MR +S+ ++K+AEGSCL+K GDT ++ TA+LEE+VP +I+ + GW+T
Sbjct: 60 MRPSGRHLSEMRTVSIETGITKHAEGSCLIKVGDTQVICTASLEERVPPFIKGSGLGWVT 119
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPRSTG+R++REA SG+QGGR+ EIQR+IGR+LR+ VD ALG RQI IDCDVIQ
Sbjct: 120 AEYGMLPRSTGSRMRREATSGKQGGRTVEIQRLIGRSLRAGVDRVALGERQITIDCDVIQ 179
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTR A+ITG WVAL + + + V VAA+SCG+ G PI+DLDY
Sbjct: 180 ADGGTRCASITGGWVALRLAVNKLMKAGDVKTDPLV--SPVAAVSCGIYAGQPILDLDYP 237
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
EDS VD NF++ G ++EVQ SAE ATFS+ +++LA+ +A L++ QK ++
Sbjct: 238 EDSEAGVDGNFILRGDGQLIEVQMSAEGATFSRAQMSELMDLAEKGVAQLVEAQKAAVA 296
>gi|158319608|ref|YP_001512115.1| ribonuclease PH [Alkaliphilus oremlandii OhILAs]
gi|158139807|gb|ABW18119.1| ribonuclease PH [Alkaliphilus oremlandii OhILAs]
Length = 247
Score = 184 bits (466), Expect = 1e-44, Method: Composition-based stats.
Identities = 121/238 (50%), Positives = 167/238 (70%), Gaps = 2/238 (0%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R+ GR+ N++R + TR ++YA+GS LV+ G+T ++ TAT+E+KVP +++NT GWITA
Sbjct: 3 RIDGRKNNELRPVKFTRNFTRYAQGSVLVEMGETKVICTATIEDKVPPFLKNTGKGWITA 62
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
EY MLP ST +R RE+ G+ GR+QEIQR+IGRALRSVVDL ALG R + IDCDVIQA
Sbjct: 63 EYSMLPSSTQSRKVRESSRGKVEGRTQEIQRLIGRALRSVVDLDALGERTLWIDCDVIQA 122
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
DGGTRTA+ITG++VAL D L +++ S ++ V+AIS G++ G ++DL Y E
Sbjct: 123 DGGTRTASITGSFVALVDALNKLKEE--GAIESIPVRSFVSAISVGIINGEAMLDLCYEE 180
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
DST VD N VMTD G VEVQG+ E + F++ +L L + +LI+LQK+ +
Sbjct: 181 DSTAKVDMNIVMTDRGEFVEVQGTGEESPFAKADLMNLLELGEKGNLELIQLQKEALG 238
>gi|99082712|ref|YP_614866.1| RNAse PH [Ruegeria sp. TM1040]
gi|122397509|sp|Q1GCL2|RNPH_SILST RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|99038992|gb|ABF65604.1| RNAse PH [Ruegeria sp. TM1040]
Length = 237
Score = 184 bits (466), Expect = 1e-44, Method: Composition-based stats.
Identities = 126/237 (53%), Positives = 168/237 (70%), Gaps = 2/237 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR SGR N+MR +S+ +K+AEGSCL+K GDTH+L TAT+E++VP +I+ + GW+T
Sbjct: 1 MRPSGRALNEMRSVSIETGFTKHAEGSCLIKMGDTHVLCTATIEDRVPPFIKGSGLGWVT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPR+T R++REA SG+QGGR+ EIQR+IGRALR+ VD ALG RQI +DCDV+Q
Sbjct: 61 AEYGMLPRATNTRMRREAASGKQGGRTVEIQRLIGRALRAGVDRVALGERQITVDCDVLQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTR A+ITG WVAL + + L V+AISCG+ G P++DLDY
Sbjct: 121 ADGGTRCASITGGWVALRLAVNKLMKA--GDVTMDPLVDPVSAISCGIYAGQPVLDLDYP 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
EDS VD NF+MT SG ++EVQ SAE + FS+D +++LA ++L ++QK
Sbjct: 179 EDSEAGVDGNFIMTGSGKLIEVQMSAEGSVFSRDQMNELMDLAAKGTSELAEMQKAA 235
>gi|262163750|ref|ZP_06031490.1| ribonuclease PH [Vibrio mimicus VM223]
gi|262027730|gb|EEY46395.1| ribonuclease PH [Vibrio mimicus VM223]
Length = 238
Score = 184 bits (466), Expect = 1e-44, Method: Composition-based stats.
Identities = 121/238 (50%), Positives = 163/238 (68%), Gaps = 2/238 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR R +Q+R I +TR + YAEGS LV+FG+T +L A++EE VP W++ GW+T
Sbjct: 1 MRPDNRAADQVRPIKITRNYTAYAEGSVLVEFGNTKVLCNASIEEGVPRWLKGQGKGWVT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPR+T +R +REA +G+QGGR+ EIQR+I R+LR+VVDL A+G I +DCDVIQ
Sbjct: 61 AEYGMLPRATHSRTRREATNGKQGGRTMEIQRLIARSLRAVVDLEAMGEIMITVDCDVIQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+ITGA VAL D H+ +KGHVAA+S G+L + DL+Y
Sbjct: 121 ADGGTRTASITGASVALADAFAHLIAK--GQLKKNPMKGHVAAVSVGILGEDVLCDLEYV 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
EDS D D N VMT+ G ++E+QG+AE FS + +L +AK IAD++ +QK +
Sbjct: 179 EDSAADTDMNVVMTEEGKMIEIQGTAEGDPFSHEQLLELLAVAKKGIADIVAVQKASL 236
>gi|325272059|ref|ZP_08138496.1| ribonuclease PH [Pseudomonas sp. TJI-51]
gi|324102805|gb|EGC00215.1| ribonuclease PH [Pseudomonas sp. TJI-51]
Length = 240
Score = 184 bits (466), Expect = 1e-44, Method: Composition-based stats.
Identities = 120/239 (50%), Positives = 166/239 (69%), Gaps = 1/239 (0%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R SGR +Q+R I +TR +K+AEGS LV+FGDT ++ T ++E VP +++ GW+TA
Sbjct: 3 RPSGRAADQLRSIRITRNYTKHAEGSVLVEFGDTKVICTVSVENGVPRFLKGQGQGWLTA 62
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
EYGMLPRSTG R +REA G+QGGR+ EIQR+IGR+LR+ +D+S LG + +DCDVIQA
Sbjct: 63 EYGMLPRSTGERNQREASRGKQGGRTLEIQRLIGRSLRAALDMSKLGDITLYVDCDVIQA 122
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
DGGTRTA+ITGA VAL D L ++ + LK +AA+S GM G ++DLDY E
Sbjct: 123 DGGTRTASITGAMVALCDALAVIKKRG-GLKGGNPLKHMIAAVSVGMYQGEAVLDLDYLE 181
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
DS + D N VMT +G +EVQG+AE A F + F AML LA+ + ++ +LQ+ +++
Sbjct: 182 DSAAETDLNVVMTSAGGFIEVQGTAEGAPFQPEDFNAMLALAQKGMTEIFELQQAALAD 240
>gi|162139697|ref|YP_610833.2| ribonuclease PH [Pseudomonas entomophila L48]
Length = 240
Score = 184 bits (466), Expect = 1e-44, Method: Composition-based stats.
Identities = 120/239 (50%), Positives = 166/239 (69%), Gaps = 1/239 (0%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R SGR +Q+R I +TR +K+AEGS LV+FGDT ++ T ++E VP +++ GW+TA
Sbjct: 3 RPSGRAADQLRSIRITRNYTKHAEGSVLVEFGDTKVICTVSVENGVPRFLKGQGQGWLTA 62
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
EYGMLPRSTG R +REA G+QGGR+ EIQR+IGR+LR+ +D+S LG + +DCDVIQA
Sbjct: 63 EYGMLPRSTGERNQREASRGKQGGRTLEIQRLIGRSLRAALDMSKLGDITLYVDCDVIQA 122
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
DGGTRTA+ITGA VAL D L ++ + LK +AA+S GM G ++DLDY E
Sbjct: 123 DGGTRTASITGAMVALCDALAVIKKRG-GLKGGNPLKHMIAAVSVGMYQGEAVLDLDYLE 181
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
DS + D N VMT +G +EVQG+AE A F + F AML LA+ + ++ +LQ+ +++
Sbjct: 182 DSAAETDLNVVMTSAGGFIEVQGTAEGAPFQPEDFNAMLALAQKGMGEIFELQQAALAD 240
>gi|301382581|ref|ZP_07230999.1| ribonuclease PH [Pseudomonas syringae pv. tomato Max13]
gi|302063052|ref|ZP_07254593.1| ribonuclease PH [Pseudomonas syringae pv. tomato K40]
gi|302133600|ref|ZP_07259590.1| ribonuclease PH [Pseudomonas syringae pv. tomato NCPPB 1108]
Length = 240
Score = 184 bits (466), Expect = 1e-44, Method: Composition-based stats.
Identities = 119/239 (49%), Positives = 166/239 (69%), Gaps = 1/239 (0%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R SGR +Q+R I +TR +K+AEGS LV+FGDT ++ T ++E VP +++ GW+TA
Sbjct: 3 RPSGRAADQLRSIRITRNYTKHAEGSVLVEFGDTKVICTVSVENGVPRFLKGQGQGWLTA 62
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
EYGMLPR+TG R +REA G+QGGR+ EIQR+IGR+LR+ +D+S LG + +DCDVIQA
Sbjct: 63 EYGMLPRATGERNQREASRGKQGGRTLEIQRLIGRSLRAALDMSKLGDVTLYVDCDVIQA 122
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
DGGTRTA+ITGA VAL D L+ ++ + LK +AA S GM G P++DLDY E
Sbjct: 123 DGGTRTASITGAMVALADALKVIKKRG-GLKGGDPLKQMIAAASVGMYQGEPVLDLDYLE 181
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
DS + D N VMT +G +EVQG+AE A F + AML LA+ + +L ++Q+ +++
Sbjct: 182 DSAAETDLNVVMTSAGGFIEVQGTAEGAPFQPEELNAMLALAQKGMTELFEMQRAALAD 240
>gi|332968500|gb|EGK07563.1| tRNA nucleotidyltransferase [Psychrobacter sp. 1501(2011)]
Length = 238
Score = 184 bits (466), Expect = 1e-44, Method: Composition-based stats.
Identities = 119/239 (49%), Positives = 164/239 (68%), Gaps = 2/239 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR+ R+ +Q+R ++ R +K+AEGS LV FGDT +L TA++E VP W++ GW+T
Sbjct: 1 MRIDNRELDQLRTVTFERNYTKHAEGSVLVCFGDTKVLCTASVESGVPRWLKGKGQGWVT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPR+T R +REA G+Q GR+QEIQR+IGR+LR++VDL+ LG I +DCDV+Q
Sbjct: 61 AEYGMLPRATNTRNQREAARGKQSGRTQEIQRLIGRSLRAMVDLNKLGENTIYLDCDVLQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+ITGA +AL D L+ ++ V G VAA+S G+ G ++DL+Y
Sbjct: 121 ADGGTRTASITGAAIALIDALESLQQKKKLKADPLV--GLVAAVSVGVKNGEILLDLNYE 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
EDS+ D D N VMT G +E+QG+AE F++ ML +A+ IADLIKLQ+ +
Sbjct: 179 EDSSCDTDLNVVMTQKGEFIEIQGTAEEKPFTRAEADKMLAMAEKGIADLIKLQQTALG 237
>gi|304407458|ref|ZP_07389110.1| ribonuclease PH [Paenibacillus curdlanolyticus YK9]
gi|304343409|gb|EFM09251.1| ribonuclease PH [Paenibacillus curdlanolyticus YK9]
Length = 248
Score = 184 bits (466), Expect = 1e-44, Method: Composition-based stats.
Identities = 120/240 (50%), Positives = 169/240 (70%), Gaps = 2/240 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR+ GR+ Q+R I++ V+KYAEGS L+ FGDT +L TAT+E++VP +++ GW+T
Sbjct: 1 MRIDGREAAQLRSITIETGVNKYAEGSVLIAFGDTKVLVTATVEDRVPPFMKGQGKGWVT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEY MLPR+T +R +REA G+ GGR+ EIQR+IGRALRSVVDL ALG R I +DCDVIQ
Sbjct: 61 AEYSMLPRATQSRNQREAARGKLGGRTMEIQRLIGRALRSVVDLQALGERTITLDCDVIQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRT +ITGA++AL + + + + S + ++A++S G++ G P++DL+Y
Sbjct: 121 ADGGTRTTSITGAFIALAIAVDKLAEKA--SFKSYPITDYLASVSVGVVNGSPVLDLNYD 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
EDS VD N VMT +G VEVQG+ E + FS+ A+L LA+ I +LI Q++V+
Sbjct: 179 EDSKAKVDMNVVMTGAGQFVEVQGTGEESPFSRSELDALLGLAETGITELIGKQREVLGQ 238
>gi|95113322|emb|CAK18050.1| ribonuclease PH (RNase PH), tRNA nucleotidyltransferase
[Pseudomonas entomophila L48]
Length = 253
Score = 184 bits (466), Expect = 1e-44, Method: Composition-based stats.
Identities = 120/239 (50%), Positives = 166/239 (69%), Gaps = 1/239 (0%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R SGR +Q+R I +TR +K+AEGS LV+FGDT ++ T ++E VP +++ GW+TA
Sbjct: 16 RPSGRAADQLRSIRITRNYTKHAEGSVLVEFGDTKVICTVSVENGVPRFLKGQGQGWLTA 75
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
EYGMLPRSTG R +REA G+QGGR+ EIQR+IGR+LR+ +D+S LG + +DCDVIQA
Sbjct: 76 EYGMLPRSTGERNQREASRGKQGGRTLEIQRLIGRSLRAALDMSKLGDITLYVDCDVIQA 135
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
DGGTRTA+ITGA VAL D L ++ + LK +AA+S GM G ++DLDY E
Sbjct: 136 DGGTRTASITGAMVALCDALAVIKKRG-GLKGGNPLKHMIAAVSVGMYQGEAVLDLDYLE 194
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
DS + D N VMT +G +EVQG+AE A F + F AML LA+ + ++ +LQ+ +++
Sbjct: 195 DSAAETDLNVVMTSAGGFIEVQGTAEGAPFQPEDFNAMLALAQKGMGEIFELQQAALAD 253
>gi|326779081|ref|ZP_08238346.1| ribonuclease PH [Streptomyces cf. griseus XylebKG-1]
gi|326659414|gb|EGE44260.1| ribonuclease PH [Streptomyces cf. griseus XylebKG-1]
Length = 245
Score = 184 bits (466), Expect = 1e-44, Method: Composition-based stats.
Identities = 117/238 (49%), Positives = 155/238 (65%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R+ GR Q+R +++ R SK+AEGS L+ FGDT + TA++ E VP W + + GW+TA
Sbjct: 3 RIDGRTPEQLRPVTIERGWSKHAEGSVLISFGDTKVFCTASVTEGVPRWRKGSGEGWVTA 62
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
EY MLPRST R REAV G+ GGR+ EI R+IGR+LR+V+D ALG I++DCDV+QA
Sbjct: 63 EYSMLPRSTNTRGDREAVRGKIGGRTHEISRLIGRSLRAVIDYKALGENTIVLDCDVLQA 122
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
DGGTRTAAITGA+VAL D + + + L VAAIS G++ G P++DL Y E
Sbjct: 123 DGGTRTAAITGAYVALADAVAWAQGKKIVKAGRKPLTDTVAAISVGIVDGTPLLDLCYEE 182
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
D + D N V T G VEVQG+AE A F + A+L+LA DL LQ+D ++
Sbjct: 183 DVRAETDMNVVCTGDGRFVEVQGTAEGAPFDRKELGALLDLATAGCVDLAALQRDALA 240
>gi|92115783|ref|YP_575512.1| ribonuclease PH [Nitrobacter hamburgensis X14]
gi|122418904|sp|Q1QRU5|RNPH_NITHX RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|91798677|gb|ABE61052.1| RNAse PH [Nitrobacter hamburgensis X14]
Length = 237
Score = 184 bits (466), Expect = 1e-44, Method: Composition-based stats.
Identities = 142/239 (59%), Positives = 180/239 (75%), Gaps = 2/239 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR S R +++R +SL R V KYAEGSC+VKFGDTH+L TATLEE++P W++ GW+T
Sbjct: 1 MRPSRRAPDELRAVSLERGVVKYAEGSCMVKFGDTHVLVTATLEERLPPWLKGQGRGWVT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPR+T R +REA +G+QGGR+ EIQR+IGR+LR+ VDL ALG RQI +DCDVIQ
Sbjct: 61 AEYGMLPRATLERTRREASAGKQGGRTVEIQRLIGRSLRAAVDLEALGERQITVDCDVIQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+ITGAWVAL DC+ M+ + + +VAA+SCG+ G P++DLDY
Sbjct: 121 ADGGTRTASITGAWVALADCIGWMKARNMIKTSVL--RDNVAAVSCGIYNGTPVLDLDYA 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
EDS D DANFVMT G I+EVQG+AE+ FSQD F A+L LAK +A L+ LQK ++
Sbjct: 179 EDSEADTDANFVMTGDGRIIEVQGTAEKTPFSQDEFLALLALAKKGVARLVDLQKMAVA 237
>gi|302545021|ref|ZP_07297363.1| tRNA nucleotidyltransferase [Streptomyces hygroscopicus ATCC 53653]
gi|302462639|gb|EFL25732.1| tRNA nucleotidyltransferase [Streptomyces himastatinicus ATCC
53653]
Length = 241
Score = 184 bits (466), Expect = 1e-44, Method: Composition-based stats.
Identities = 111/238 (46%), Positives = 156/238 (65%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R+ GR +Q+R +++ R SK+AEGS LV FGDT +L TA++ E VP W + + GW+TA
Sbjct: 3 RIDGRTPDQLRPVTIERGWSKHAEGSVLVSFGDTRVLCTASVNEGVPRWRKGSGEGWVTA 62
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
EY MLPR+T R RE+V G+ GGR+ EI R+IGR+LR+V+D ALG +++DCDV+QA
Sbjct: 63 EYAMLPRATNTRGDRESVRGKIGGRTHEISRLIGRSLRAVIDYKALGENTVVLDCDVLQA 122
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
DGGTRTAAITGA+VAL D + + Q L G V+A+S G++ G P++DL Y E
Sbjct: 123 DGGTRTAAITGAYVALADAITWAQGKKLIKAGRQPLTGTVSAVSVGIVGGVPLLDLCYEE 182
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
D + D N V T G VEVQG+AE F+++ ++L+LA +L Q+ +
Sbjct: 183 DVRAETDMNVVCTGDGRFVEVQGTAEGEPFAREELNSLLDLAVGGCVELAGNQRAALG 240
>gi|330447145|ref|ZP_08310795.1| ribonuclease PH [Photobacterium leiognathi subsp. mandapamensis
svers.1.1.]
gi|328491336|dbj|GAA05292.1| ribonuclease PH [Photobacterium leiognathi subsp. mandapamensis
svers.1.1.]
Length = 238
Score = 184 bits (466), Expect = 1e-44, Method: Composition-based stats.
Identities = 128/240 (53%), Positives = 171/240 (71%), Gaps = 2/240 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR SGR NQ+R I++TR+ + +AEGS LV+FG+T ++ TA++EE VP W++ GW+T
Sbjct: 1 MRPSGRSANQVRPITITRQYTAHAEGSVLVEFGNTKVICTASVEENVPRWLKGKGQGWVT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPR+T R +REA +G+QGGR+ EIQR+I R+LR+ VDL LG + I +DCDVIQ
Sbjct: 61 AEYGMLPRATHTRNRREAANGKQGGRTMEIQRLIARSLRAAVDLEVLGEQMITVDCDVIQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+ITGA VAL D + +M + LKG VAA+S G+ G PI DL+Y
Sbjct: 121 ADGGTRTASITGAMVALVDAINYMLEK--GMIKKNPLKGMVAAVSVGIYNGEPICDLEYL 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
EDS + D N VMT+ G ++E+QG+AE FS + AML LAKD I+D+I +QK + N
Sbjct: 179 EDSAAETDMNVVMTEEGKMIEIQGTAEGEAFSHEELLAMLALAKDGISDIISMQKQALEN 238
>gi|86146528|ref|ZP_01064850.1| ribonuclease PH [Vibrio sp. MED222]
gi|218708240|ref|YP_002415861.1| ribonuclease PH [Vibrio splendidus LGP32]
gi|254808602|sp|B7VHJ7|RNPH_VIBSL RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|85835585|gb|EAQ53721.1| ribonuclease PH [Vibrio sp. MED222]
gi|218321259|emb|CAV17209.1| Ribonuclease PH [Vibrio splendidus LGP32]
Length = 238
Score = 184 bits (466), Expect = 1e-44, Method: Composition-based stats.
Identities = 118/240 (49%), Positives = 163/240 (67%), Gaps = 2/240 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR + R +Q+R I +TR + YAEGS LV+FG+T +L AT+EE VP W++ GW+T
Sbjct: 1 MRPNDRAVDQIRPIKITRNYTAYAEGSVLVEFGNTKVLCNATVEENVPRWLKGQGKGWVT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPR+T R +REA SG+QGGR+ EIQR+I R+LR+VVDL +G I +DCDVIQ
Sbjct: 61 AEYGMLPRATHTRNRREAASGKQGGRTMEIQRLIARSLRAVVDLKVMGEIMITVDCDVIQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+I+GA VA+ D + + +KGHVAA+S G++ + DL+Y
Sbjct: 121 ADGGTRTASISGASVAMADAINSLLAS--GKLKKNPMKGHVAAVSVGIVGAQALCDLEYV 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
EDS D D N VMT+ G ++E+QG+AE FS + +L LA IAD+++ QK +++
Sbjct: 179 EDSAADTDMNVVMTEDGKMIEIQGTAEGEPFSHEELMQLLALANKGIADIVEAQKAALAD 238
>gi|315127898|ref|YP_004069901.1| RNase PH (tRNA nucleotidyltransferase) [Pseudoalteromonas sp.
SM9913]
gi|315016412|gb|ADT69750.1| RNase PH (tRNA nucleotidyltransferase) [Pseudoalteromonas sp.
SM9913]
Length = 237
Score = 183 bits (465), Expect = 1e-44, Method: Composition-based stats.
Identities = 121/239 (50%), Positives = 160/239 (66%), Gaps = 2/239 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR S R NQ+R ++ TR + +AEGS LV+FG+T +L TAT+E VP +++ GW+
Sbjct: 1 MRPSERTPNQIRPVTFTRNYTLHAEGSVLVEFGNTKVLCTATVEAGVPRFMKGQGKGWVN 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPR+T R REA G+QGGR+ EIQR+I R+LR+ +DL ALG I IDCDVIQ
Sbjct: 61 AEYGMLPRATHTRNSREATRGKQGGRTMEIQRLIARSLRAAIDLKALGENTITIDCDVIQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+I+GA VAL D L +M S LK +AAIS G+ G I DL+Y
Sbjct: 121 ADGGTRTASISGACVALVDALTYMRAK--GMINSNPLKHMIAAISVGIYKGQAISDLEYL 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
EDS + D N ++T++G I+EVQG+AE FS D +L LAK I ++I +QK ++
Sbjct: 179 EDSDAETDMNVILTETGKIIEVQGTAEGEPFSFDELDELLTLAKHSIREIIDVQKQALA 237
>gi|70733342|ref|YP_263117.1| ribonuclease PH [Pseudomonas fluorescens Pf-5]
gi|123652029|sp|Q4K3R6|RNPH_PSEF5 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|68347641|gb|AAY95247.1| ribonuclease PH [Pseudomonas fluorescens Pf-5]
Length = 240
Score = 183 bits (465), Expect = 1e-44, Method: Composition-based stats.
Identities = 119/239 (49%), Positives = 166/239 (69%), Gaps = 1/239 (0%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R SGR +Q+R I +TR +K+AEGS LV+FGDT ++ T ++E VP +++ GW+TA
Sbjct: 3 RPSGRAADQLRSIRITRNYTKHAEGSVLVEFGDTKVICTVSVENGVPRFLKGQGQGWLTA 62
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
EYGMLPR+TG R +REA G+QGGR+ EIQR+IGR+LR+ +D+S LG + +DCDVIQA
Sbjct: 63 EYGMLPRATGERNQREASRGKQGGRTLEIQRLIGRSLRAALDMSKLGDVTLYVDCDVIQA 122
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
DGGTRTA+ITGA VAL D L+ ++ + LK +AA+S GM G P++DLDY E
Sbjct: 123 DGGTRTASITGAMVALVDALKVIKKRG-GLKGGDPLKQMIAAVSVGMYQGEPVLDLDYLE 181
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
DS + D N VMT +G +EVQG+AE A F AML LA+ + ++ +LQ+ +++
Sbjct: 182 DSAAETDLNVVMTSTGGFIEVQGTAEGAPFQPAELNAMLALAQQGMNEIFQLQQAALAD 240
>gi|212635008|ref|YP_002311533.1| ribonuclease PH [Shewanella piezotolerans WP3]
gi|226736939|sp|B8CM22|RNPH_SHEPW RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|212556492|gb|ACJ28946.1| Ribonuclease PH [Shewanella piezotolerans WP3]
Length = 237
Score = 183 bits (465), Expect = 1e-44, Method: Composition-based stats.
Identities = 121/239 (50%), Positives = 165/239 (69%), Gaps = 2/239 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR S R Q R +++TR+ + +AEGS LV+FGDT +L TA+ EE VP +++ GW+T
Sbjct: 1 MRPSNRTPAQSRPVTITRQFTAHAEGSVLVEFGDTKVLCTASFEEGVPRFLKGQGQGWVT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPRST +R+ REA G+Q GR+QEIQR+IGR+LR+ VD+ LG I+IDCDVIQ
Sbjct: 61 AEYGMLPRSTHSRMNREAARGKQSGRTQEIQRLIGRSLRAAVDMKLLGENTIVIDCDVIQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTAAITGA VAL D L + LK +AA+S G+ G PI DL+Y
Sbjct: 121 ADGGTRTAAITGACVALVDALNW--ARGKGILKTNPLKFLIAAVSVGIYKGEPICDLEYI 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
EDS + D N VMT++G ++E+QG+AE F+ + ++L+LAK I +++ +QK +S
Sbjct: 179 EDSAAETDMNVVMTETGKMIEIQGTAEGEPFTHEELLSLLDLAKHGIREIVDIQKASLS 237
>gi|119382767|ref|YP_913823.1| ribonuclease PH [Paracoccus denitrificans PD1222]
gi|119372534|gb|ABL68127.1| RNAse PH [Paracoccus denitrificans PD1222]
Length = 241
Score = 183 bits (465), Expect = 1e-44, Method: Composition-based stats.
Identities = 124/239 (51%), Positives = 169/239 (70%), Gaps = 2/239 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR SGR + MR IS+ + ++AEGSCL+ GDT +L +A++EEK P +++ + GW+T
Sbjct: 2 MRPSGRNLSDMRPISIETGIMRHAEGSCLISCGDTRVLCSASIEEKAPPFLKGSGQGWVT 61
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPR+T R +REA +G+Q GR+QEIQR+IGRALR+ VD ALG RQI++DCDVIQ
Sbjct: 62 AEYGMLPRATNTRNRREAAAGKQSGRTQEIQRLIGRALRAGVDRRALGERQIVVDCDVIQ 121
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTR AAITG WVAL + + + + HVAA+SCG+ G PI+DLDY
Sbjct: 122 ADGGTRCAAITGGWVALRLAMNKLLKA--GIVTADPIMDHVAAVSCGIYAGQPILDLDYA 179
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
EDS D NF+MT +G ++EVQ SAE ATFS+ +L+LA+ IA+L++ Q + ++
Sbjct: 180 EDSEAGTDGNFIMTGAGRLIEVQMSAEGATFSRPEMNQLLDLAEAGIAELVRAQNEAVA 238
>gi|114705078|ref|ZP_01437986.1| ribonuclease PH [Fulvimarina pelagi HTCC2506]
gi|114539863|gb|EAU42983.1| ribonuclease PH [Fulvimarina pelagi HTCC2506]
Length = 240
Score = 183 bits (465), Expect = 1e-44, Method: Composition-based stats.
Identities = 139/240 (57%), Positives = 188/240 (78%), Gaps = 1/240 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR S R + MRE+SLT V+++AEGSCLVKFG+T +L TA+LEE++P W++N+ GW+T
Sbjct: 1 MRPSKRPADSMREVSLTTGVNRHAEGSCLVKFGETQVLCTASLEERIPPWLKNSGKGWVT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPR+TG+R++REA +G+QGGR+ EIQR+IGR+LR+VVD+ ALG RQI +DCDVIQ
Sbjct: 61 AEYGMLPRATGDRMRREASAGKQGGRTVEIQRLIGRSLRAVVDMGALGERQITVDCDVIQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+ITG +VAL +CL+ ME S + + VLKGHVAA+SCG+ P++DLDY
Sbjct: 121 ADGGTRTASITGGYVALAECLKWMEARSMCQRKN-VLKGHVAAVSCGIYKNEPVLDLDYA 179
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
EDS + DANFVMT +G IVE+QG+AE FS++ F ++ LAK I +L++ Q + +
Sbjct: 180 EDSVAETDANFVMTGAGGIVEIQGTAEGTPFSEEEFTKLMALAKKGIGELVEAQTAALGD 239
>gi|332532804|ref|ZP_08408678.1| ribonuclease PH [Pseudoalteromonas haloplanktis ANT/505]
gi|332037831|gb|EGI74281.1| ribonuclease PH [Pseudoalteromonas haloplanktis ANT/505]
Length = 237
Score = 183 bits (465), Expect = 1e-44, Method: Composition-based stats.
Identities = 124/239 (51%), Positives = 160/239 (66%), Gaps = 2/239 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR S R NQ+R ++ TR + +AEGS LV+FG+T +L TAT+E VP +++ GWI
Sbjct: 1 MRPSERTPNQIRPVTFTRNYTLHAEGSVLVEFGNTKVLCTATVESGVPRFMKGQGKGWIN 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPR+T R REA G+QGGR+ EIQR+I RALR+ VDL ALG I IDCDVIQ
Sbjct: 61 AEYGMLPRATHTRNAREAARGKQGGRTMEIQRLIARALRAAVDLKALGENTITIDCDVIQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+I+GA VAL D L HM S LK +AAIS G+ G I DL+Y
Sbjct: 121 ADGGTRTASISGACVALVDALTHMRAK--GMINSNPLKHMIAAISVGIYKGQAISDLEYI 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
EDS + D N ++T++G I+E+QG+AE FS D +L LAK I ++I +QK ++
Sbjct: 179 EDSAAETDMNVILTETGKIIEIQGTAEGEPFSFDELDELLTLAKHSIREIIDVQKQALA 237
>gi|323137091|ref|ZP_08072171.1| ribonuclease PH [Methylocystis sp. ATCC 49242]
gi|322397852|gb|EFY00374.1| ribonuclease PH [Methylocystis sp. ATCC 49242]
Length = 238
Score = 183 bits (465), Expect = 1e-44, Method: Composition-based stats.
Identities = 134/240 (55%), Positives = 178/240 (74%), Gaps = 2/240 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR S R ++MR +S R V++YAEGSCLVKFG+TH+L A+LE+K P W+R GW+T
Sbjct: 1 MRPSKRAPDEMRPVSFERGVARYAEGSCLVKFGNTHVLCAASLEDKPPPWLRGQGRGWVT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEY MLPR+T R +RE+ +G+ GR+QEIQR+IGR+LR+V +L A+G RQI+IDCDVIQ
Sbjct: 61 AEYSMLPRATHTRTRRESSAGKLTGRTQEIQRLIGRSLRAVTNLPAMGERQIVIDCDVIQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+ITGAW+AL DC + M S L+ HVAA+SCG+ G P++DLDY
Sbjct: 121 ADGGTRTASITGAWLALRDCFEWMRSRS--IIKDNPLRDHVAAVSCGIFNGTPVIDLDYA 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
EDST + DANFV+T SG +VE+Q +AE A FS D ++L LA+ +ADL+ LQK +++
Sbjct: 179 EDSTAETDANFVITGSGGLVEIQATAEVAVFSPDELTSLLTLAQGGVADLVALQKAALAS 238
>gi|223041894|ref|ZP_03612080.1| ribonuclease PH [Actinobacillus minor 202]
gi|240948855|ref|ZP_04753211.1| ribonuclease PH [Actinobacillus minor NM305]
gi|223017310|gb|EEF15735.1| ribonuclease PH [Actinobacillus minor 202]
gi|240296670|gb|EER47281.1| ribonuclease PH [Actinobacillus minor NM305]
Length = 238
Score = 183 bits (465), Expect = 1e-44, Method: Composition-based stats.
Identities = 122/240 (50%), Positives = 165/240 (68%), Gaps = 2/240 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR + R+ NQ+R + +TR +KYAEGS L++FG+T +L AT+EE VP +++ + GW+T
Sbjct: 1 MRPNNRELNQVRPVKITRHYTKYAEGSVLIEFGETKVLCNATVEETVPRFLKGQQQGWVT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPR+T +R +REA G+QGGR+ EIQR+I R+LR++VDL ALG R I IDCDVIQ
Sbjct: 61 AEYGMLPRATHSRTQREAAKGKQGGRTMEIQRLIARSLRAIVDLKALGERTITIDCDVIQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+ITGA VALHD + + + LKG VAAIS G++ + DL+Y
Sbjct: 121 ADGGTRTASITGACVALHDAINKLMAD--GVLKTNPLKGLVAAISVGIVNNNAVCDLEYV 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
EDS + D N VM D G +VEVQG+AE F+ +L+LA I LI+ Q+ ++
Sbjct: 179 EDSNAETDMNVVMVDDGRLVEVQGTAEGEPFTHMELLQLLDLAHQGIEQLIEAQRKALAE 238
>gi|307133086|ref|YP_003885102.1| ribonuclease PH [Dickeya dadantii 3937]
gi|306530615|gb|ADN00546.1| ribonuclease PH [Dickeya dadantii 3937]
Length = 238
Score = 183 bits (465), Expect = 2e-44, Method: Composition-based stats.
Identities = 123/240 (51%), Positives = 165/240 (68%), Gaps = 2/240 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR +GR Q+R ++LTR +K+AEGS LV+FGDT +L AT+E+ VP +++ GWIT
Sbjct: 1 MRPTGRSAQQIRPLTLTRHYTKHAEGSVLVEFGDTKVLCNATVEDGVPRFLKGQGQGWIT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPRST +R REA G+QGGR+ EIQR+I R+LR+ VDL+ LG I +DCDV+Q
Sbjct: 61 AEYGMLPRSTHSRNAREAAKGKQGGRTLEIQRLIARSLRAAVDLNKLGEYTITLDCDVLQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+ITGA VAL D L M LKG VAA+S G++ G + DL+Y
Sbjct: 121 ADGGTRTASITGACVALADALNGMVASGKLKTS--PLKGMVAAVSVGIVNGEAVCDLEYV 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
EDS + D N VMT+ G ++EVQG+AE FS D ++L LA+ I D+++ QK +++
Sbjct: 179 EDSAAETDMNVVMTEDGRMIEVQGTAEGEPFSHDELLSLLALARQGIEDIVRAQKAALAD 238
>gi|258625880|ref|ZP_05720755.1| ribonuclease PH [Vibrio mimicus VM603]
gi|258581844|gb|EEW06718.1| ribonuclease PH [Vibrio mimicus VM603]
Length = 238
Score = 183 bits (464), Expect = 2e-44, Method: Composition-based stats.
Identities = 121/238 (50%), Positives = 163/238 (68%), Gaps = 2/238 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR R +Q+R I +TR + YAEGS LV+FG+T +L A++EE VP W++ GW+T
Sbjct: 1 MRPDNRAADQVRPIKITRNYTAYAEGSVLVEFGNTKVLCNASIEEGVPRWLKGQGKGWVT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPR+T +R +REA +G+QGGR+ EIQR+I R+LR+VVDL A+G I +DCDVIQ
Sbjct: 61 AEYGMLPRATHSRTRREATNGKQGGRTMEIQRLIARSLRAVVDLEAMGEIMITVDCDVIQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+ITGA VAL D H+ +KGHVAA+S G+L + DL+Y
Sbjct: 121 ADGGTRTASITGASVALADAFAHLMAK--GQLKKNPMKGHVAAVSVGILGEDVLCDLEYV 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
EDS D D N VMT+ G ++E+QG+AE FS + +L +AK IAD++ +QK +
Sbjct: 179 EDSAADTDMNVVMTEEGKMIEIQGTAEGEPFSHEQLLELLAVAKKGIADIVAVQKASL 236
>gi|110801547|ref|YP_699516.1| ribonuclease PH [Clostridium perfringens SM101]
gi|123145921|sp|Q0SQU1|RNPH_CLOPS RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|110682048|gb|ABG85418.1| tRNA nucleotidyltransferase [Clostridium perfringens SM101]
Length = 248
Score = 183 bits (464), Expect = 2e-44, Method: Composition-based stats.
Identities = 109/241 (45%), Positives = 159/241 (65%), Gaps = 2/241 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR SGR++ Q+R + +TR +KYAEGS L++ GDT +L TA++EEKVP +++ + GWIT
Sbjct: 1 MRSSGRKKEQIRPVKITRNFTKYAEGSVLIEVGDTKVLCTASIEEKVPPFLKGSGEGWIT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEY M+PRST +R +R+ + GR+ EIQR+IGRALRS VD+ ALG + I IDCDV+Q
Sbjct: 61 AEYNMIPRSTQSRKQRDINKLKIDGRTMEIQRLIGRALRSAVDMKALGEKTIWIDCDVLQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRT +ITG++VAL D + + K ++ V+A+S G++ ++DL Y
Sbjct: 121 ADGGTRTTSITGSFVALVDAVNKLH--QKKPFNVYPIRHFVSAVSIGIVGEEKVLDLCYE 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
ED VD N VM + G +E+QG+ E FS+ +LNLA+ +I+ QK+ +
Sbjct: 179 EDHVAKVDMNVVMIEEGEFIEIQGTGEIGPFSRKELDELLNLAEKGAKQMIQAQKNALKT 238
Query: 241 E 241
+
Sbjct: 239 D 239
>gi|307256075|ref|ZP_07537863.1| Ribonuclease PH [Actinobacillus pleuropneumoniae serovar 10 str.
D13039]
gi|306865497|gb|EFM97392.1| Ribonuclease PH [Actinobacillus pleuropneumoniae serovar 10 str.
D13039]
Length = 238
Score = 183 bits (464), Expect = 2e-44, Method: Composition-based stats.
Identities = 122/239 (51%), Positives = 165/239 (69%), Gaps = 2/239 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR + R+ NQ+R + +TR ++YAEGS LV+FG+T +L AT+EE VP +++ + GW+T
Sbjct: 1 MRPNNRKLNQVRPVKITRHYTRYAEGSVLVEFGETKVLCNATVEETVPRFLKGQQQGWVT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPRST +R++REA G+QGGR+ EIQR+I R+LR+VVDL ALG R + +DCDVIQ
Sbjct: 61 AEYGMLPRSTHSRMQREAAKGKQGGRTMEIQRLIARSLRAVVDLKALGERTVTVDCDVIQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTAAITGA VALHD + + +KG VAAIS G++ G + DL+Y
Sbjct: 121 ADGGTRTAAITGACVALHDAMSKLVAD--GVLKENPMKGLVAAISVGIVDGNAVCDLEYV 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
EDS + D N VM + G +VEVQG+AE FS +L+LA I L+ Q+ ++
Sbjct: 179 EDSNAETDMNVVMVEDGRLVEVQGTAEGEPFSHMELLQLLDLAHQGINQLLDAQRKALA 237
>gi|150388786|ref|YP_001318835.1| ribonuclease PH [Alkaliphilus metalliredigens QYMF]
gi|149948648|gb|ABR47176.1| ribonuclease PH [Alkaliphilus metalliredigens QYMF]
Length = 255
Score = 183 bits (464), Expect = 2e-44, Method: Composition-based stats.
Identities = 117/239 (48%), Positives = 167/239 (69%), Gaps = 2/239 (0%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R+ GR+ +++R + T+ +K+A+GS LV+ G+T ++ TA +EE+VP +++N+ GW+TA
Sbjct: 3 RVDGRKFDELRPVKFTKNYTKHAQGSVLVEMGETKVICTAMVEERVPHFLKNSGKGWVTA 62
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
EY MLP ST R RE+ G+ GR+QEIQR+IGRALRSV+DL ALG R I IDCDVIQA
Sbjct: 63 EYSMLPSSTNTRKIRESSRGKIEGRTQEIQRLIGRALRSVIDLEALGERTIWIDCDVIQA 122
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
DGGTRTA+ITGA++AL + + +++ K +K +V+AIS G++ P++DL Y E
Sbjct: 123 DGGTRTASITGAFIALVEAINSVKEA--KKITYIPIKNYVSAISVGIVNDQPVLDLCYEE 180
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
DS VD N VMTD +EVQG+ E A FS+D +L L ++ A LI LQK+V+ +
Sbjct: 181 DSKAMVDMNIVMTDMKEFIEVQGTGEEAPFSRDSLMELLRLGEEGNAQLIALQKEVLGS 239
>gi|120553485|ref|YP_957836.1| ribonuclease PH [Marinobacter aquaeolei VT8]
gi|166228289|sp|A1TY30|RNPH_MARAV RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|120323334|gb|ABM17649.1| RNAse PH [Marinobacter aquaeolei VT8]
Length = 238
Score = 183 bits (464), Expect = 2e-44, Method: Composition-based stats.
Identities = 132/239 (55%), Positives = 166/239 (69%), Gaps = 2/239 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR SGR Q R++ +TR +++AEGS LV+FGDT ++ TA++E KVP ++R GWIT
Sbjct: 1 MRPSGRTPEQPRDVRITRNYTRHAEGSVLVEFGDTKVICTASVENKVPPFLRGEGKGWIT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPRSTG+R+ REA G+QGGR+ EIQR+IGR+LR+ VDL ALG I IDCDVIQ
Sbjct: 61 AEYGMLPRSTGSRMGREAARGKQGGRTVEIQRLIGRSLRAAVDLEALGEHTITIDCDVIQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTAAITG VAL D L H+ + LK VAA+S G+ G P+ DLDY
Sbjct: 121 ADGGTRTAAITGGCVALVDALNHLVKEKRLKKS--PLKQMVAAVSVGVYRGTPVADLDYP 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
EDS + D N +MTD G +E+QG+AE A F Q AML LA+ I L +LQK+ +S
Sbjct: 179 EDSEAETDMNVIMTDQGGFIEIQGTAEGAPFEQAELDAMLALARKAIDQLFELQKEALS 237
>gi|221135142|ref|ZP_03561445.1| RNase PH (tRNA nucleotidyltransferase) [Glaciecola sp. HTCC2999]
Length = 238
Score = 183 bits (464), Expect = 2e-44, Method: Composition-based stats.
Identities = 122/240 (50%), Positives = 163/240 (67%), Gaps = 2/240 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR SGR NQ+R +++TR + +AEGS LV+FG+T ++ AT+EE VP +++ GWIT
Sbjct: 1 MRPSGRTANQIRPVTITRHFTCHAEGSVLVEFGNTKVICNATVEEGVPRFMKGKGEGWIT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEY MLPR+T +R REA G+QGGR+ EIQR+I R+LR+ VDL LG I +DCDVIQ
Sbjct: 61 AEYSMLPRATHSRSGREAARGKQGGRTLEIQRLIARSLRAAVDLKLLGENTITLDCDVIQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+ITGA VAL D L HM + LK +AA+S G+ G I DL+Y
Sbjct: 121 ADGGTRTASITGACVALVDALTHMRSK--GILKANPLKHMIAALSVGVYKGNAIADLEYL 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
EDS + D N VMT++G ++EVQG+AE FS + ML+LAK + +L +QK ++N
Sbjct: 179 EDSDAETDMNVVMTETGKLIEVQGTAEGEPFSFEEMSEMLDLAKHGLRELFDIQKTALNN 238
>gi|127514416|ref|YP_001095613.1| ribonuclease PH [Shewanella loihica PV-4]
gi|166228318|sp|A3QIQ6|RNPH_SHELP RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|126639711|gb|ABO25354.1| RNAse PH [Shewanella loihica PV-4]
Length = 237
Score = 183 bits (464), Expect = 2e-44, Method: Composition-based stats.
Identities = 122/239 (51%), Positives = 165/239 (69%), Gaps = 2/239 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR S R Q R +++TR+ + +AEGS L++FG+T +L TA+ E VP +++ GW+T
Sbjct: 1 MRPSDRTPAQSRPVTITRQFTAHAEGSVLIEFGETKVLCTASFTEGVPRFLKGQGQGWVT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPRST +R+ REA G+Q GR+QEIQR+IGRALR+ VD+ ALG I+IDCDVIQ
Sbjct: 61 AEYGMLPRSTHSRMDREAARGKQSGRTQEIQRLIGRALRAAVDMKALGENTIVIDCDVIQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTAAITGA VAL D L + LK +AA+S G+ G PI DL+Y
Sbjct: 121 ADGGTRTAAITGACVALVDALNW--ARGKGLIKTNPLKFLIAAVSVGIYKGEPICDLEYV 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
EDS + D N VMT++G I+E+QG+AE FS + ++L+LAK I +++ +QK +S
Sbjct: 179 EDSAAETDMNVVMTETGKIIEIQGTAEGEPFSHEELLSLLDLAKHGIREIVDVQKAALS 237
>gi|312128053|ref|YP_003992927.1| ribonuclease ph [Caldicellulosiruptor hydrothermalis 108]
gi|311778072|gb|ADQ07558.1| ribonuclease PH [Caldicellulosiruptor hydrothermalis 108]
Length = 258
Score = 183 bits (464), Expect = 2e-44, Method: Composition-based stats.
Identities = 115/241 (47%), Positives = 159/241 (65%), Gaps = 2/241 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR R +++R I +TR KYAEGSCL++ G+T ++ TAT+++KVP + + + GWIT
Sbjct: 1 MRQDQRAYDELRPIKITRNFIKYAEGSCLIEMGNTKVIVTATIDDKVPPFKKGSGEGWIT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEY MLPR+T R R+ R GRS EIQR+IGRALR+ ++ ALG R IIIDCDVIQ
Sbjct: 61 AEYSMLPRATQQRNVRDINKLRLSGRSHEIQRLIGRALRAGINFKALGERVIIIDCDVIQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+ITG ++A+ D + + D K + + VAA+S G+ G ++DL +
Sbjct: 121 ADGGTRTASITGGFIAMFDACKKLYDE--KIIENFPITDFVAAVSVGICDGVEMLDLCFE 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
EDS VD N VM D G +E+QG+AE A FS D F +L L K I +I++QK+V+
Sbjct: 179 EDSKAAVDMNLVMNDKGEFIEIQGTAEGAPFSWDQFQKLLELGKRGIQRIIEVQKEVLGE 238
Query: 241 E 241
+
Sbjct: 239 D 239
>gi|119773461|ref|YP_926201.1| ribonuclease PH [Shewanella amazonensis SB2B]
gi|166228315|sp|A1S2C5|RNPH_SHEAM RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|119765961|gb|ABL98531.1| RNAse PH [Shewanella amazonensis SB2B]
Length = 237
Score = 183 bits (464), Expect = 2e-44, Method: Composition-based stats.
Identities = 123/239 (51%), Positives = 159/239 (66%), Gaps = 2/239 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR R Q R IS+TR + +AEGS LV+FG+T +L TA+ E VP +++ + GW+T
Sbjct: 1 MRPGNRTPAQTRPISITRNFTAHAEGSVLVEFGETKVLCTASFTEGVPRFLKGSGQGWLT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPRST +R+ REA G+Q GR+QEIQR+IGRALR+ VDL LG I++DCDVIQ
Sbjct: 61 AEYGMLPRSTHSRMDREAARGKQSGRTQEIQRLIGRALRAAVDLKQLGENTIVVDCDVIQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTAAITGA VAL D L + LK +AA+S G+ G I DL+Y
Sbjct: 121 ADGGTRTAAITGACVALVDALNW--ARGKGLVKANPLKFLIAAVSVGIHNGEAICDLEYV 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
EDS + D N VMT++G I+EVQG+AE F+ + ML LAK I ++I QK ++
Sbjct: 179 EDSAAETDMNVVMTETGKIIEVQGTAEGEPFTHEELLTMLELAKHGIREIIDTQKAALN 237
>gi|251791523|ref|YP_003006244.1| ribonuclease PH [Dickeya zeae Ech1591]
gi|247540144|gb|ACT08765.1| ribonuclease PH [Dickeya zeae Ech1591]
Length = 238
Score = 183 bits (464), Expect = 2e-44, Method: Composition-based stats.
Identities = 122/240 (50%), Positives = 164/240 (68%), Gaps = 2/240 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR +GR Q+R ++ TR +K+AEGS LV+FGDT +L AT+EE VP +++ GWIT
Sbjct: 1 MRPTGRSAQQIRPLTFTRHYTKHAEGSVLVEFGDTKVLCNATVEEGVPRFLKGQGQGWIT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPRST +R REA G+QGGR+ EIQR+I R+LR+ VDL+ LG I +DCDV+Q
Sbjct: 61 AEYGMLPRSTHSRNAREAAKGKQGGRTLEIQRLIARSLRAAVDLNKLGEYTITLDCDVLQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+ITGA VAL D L + LKG VAA+S G++ G + DL+Y
Sbjct: 121 ADGGTRTASITGACVALADALNGLVAGGKLKAS--PLKGMVAAVSVGIVKGEAVCDLEYV 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
EDS + D N VMT+ G ++EVQG+AE FS D ++L LA+ I D+++ QK +++
Sbjct: 179 EDSAAETDMNVVMTEDGRMIEVQGTAEGEPFSHDELLSLLALARQGIEDIVRAQKAALAD 238
>gi|115522381|ref|YP_779292.1| ribonuclease PH [Rhodopseudomonas palustris BisA53]
gi|115516328|gb|ABJ04312.1| RNAse PH [Rhodopseudomonas palustris BisA53]
Length = 243
Score = 183 bits (464), Expect = 2e-44, Method: Composition-based stats.
Identities = 137/239 (57%), Positives = 178/239 (74%), Gaps = 2/239 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR S R +++R +SL R V KYAEGSCLVKFGDTH+L TA+LEE++P W++ GW+T
Sbjct: 7 MRPSRRAPDELRAVSLERGVVKYAEGSCLVKFGDTHVLVTASLEERLPPWLKGQGRGWVT 66
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPR+T R +RE+ +G+Q GR+ EIQR+IGR+LR+ VDL A+G RQI +DCDV+Q
Sbjct: 67 AEYGMLPRATHERTRRESAAGKQSGRTVEIQRLIGRSLRASVDLEAMGERQITVDCDVLQ 126
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTAAITGAWVAL DCL M+ + + +VAAISCG+ G P++DLDY
Sbjct: 127 ADGGTRTAAITGAWVALADCLAWMKARNMIKAKVL--RDNVAAISCGIYNGTPVLDLDYA 184
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
EDS + DANFVMT G I+EVQG+AE+ FSQD F A++ LA+ +A L+ LQ ++
Sbjct: 185 EDSEAETDANFVMTGDGRIIEVQGTAEKTPFSQDEFLALMALAQKGVARLVDLQNMAVA 243
>gi|54307419|ref|YP_128439.1| putative ribonuclease PH [Photobacterium profundum SS9]
gi|90412679|ref|ZP_01220680.1| putative ribonuclease PH [Photobacterium profundum 3TCK]
gi|61215939|sp|Q6LVN8|RNPH_PHOPR RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|46911839|emb|CAG18637.1| putative ribonuclease PH [Photobacterium profundum SS9]
gi|90326254|gb|EAS42673.1| putative ribonuclease PH [Photobacterium profundum 3TCK]
Length = 238
Score = 183 bits (464), Expect = 2e-44, Method: Composition-based stats.
Identities = 127/240 (52%), Positives = 170/240 (70%), Gaps = 2/240 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR SGR +Q+R I++TR + +AEGS LV+FGDT ++ TA++EE VP W++ GW+T
Sbjct: 1 MRPSGRSTSQVRPITITRNFTAHAEGSVLVEFGDTKVICTASVEENVPRWLKGKGQGWVT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPR+T R +REA SG+QGGR+ EIQR+I R+LR+ VDL ALG + I +DCDVIQ
Sbjct: 61 AEYGMLPRATHTRNRREASSGKQGGRTMEIQRLIARSLRAAVDLEALGEQMITVDCDVIQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+ITGA VAL D + M + + +KG VAA+S G+ G I DL+Y
Sbjct: 121 ADGGTRTASITGAMVALVDAVNSMIEKGTLKKS--PIKGMVAAVSVGIYKGEAICDLEYL 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
EDS + D N VMT+ G ++E+QG+AE FS + AML LAKD IAD++ +QK + +
Sbjct: 179 EDSAAETDMNVVMTEEGKMIEIQGTAEGEAFSHEELLAMLALAKDGIADIVTMQKQALES 238
>gi|299772068|ref|YP_003734094.1| ribonuclease PH [Acinetobacter sp. DR1]
gi|298702156|gb|ADI92721.1| ribonuclease PH [Acinetobacter sp. DR1]
Length = 238
Score = 183 bits (464), Expect = 2e-44, Method: Composition-based stats.
Identities = 122/239 (51%), Positives = 161/239 (67%), Gaps = 2/239 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR+ R +Q+RE+ +TR ++YAEGS LV+FG T +L TA+++ VP +++ GW+T
Sbjct: 1 MRIDQRALDQLREVKITRNYTRYAEGSVLVEFGHTKVLCTASIDNSVPRFLKGKGQGWVT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPRST +R REA G+Q GR+QEIQR+IGR+LR++VDL LG I IDCDVIQ
Sbjct: 61 AEYGMLPRSTHSRCDREAARGKQSGRTQEIQRLIGRSLRAMVDLKKLGENTITIDCDVIQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+ITGA VAL D + S K LKG VAAIS GM ++DL Y
Sbjct: 121 ADGGTRTASITGAAVALVDAMN--VLLSQKKIKHDPLKGLVAAISVGMYQDEVLLDLCYE 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
EDS D N VMT +G +E+QG+AE F++ ML +A+ IA+LIK Q++ +
Sbjct: 179 EDSNCQTDLNVVMTQAGEFIEIQGTAEDKPFTRAQSNDMLEMAEKGIAELIKKQQEALG 237
>gi|78065577|ref|YP_368346.1| ribonuclease PH [Burkholderia sp. 383]
gi|123569063|sp|Q39IL4|RNPH_BURS3 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|77966322|gb|ABB07702.1| RNAse PH [Burkholderia sp. 383]
Length = 243
Score = 183 bits (464), Expect = 2e-44, Method: Composition-based stats.
Identities = 132/238 (55%), Positives = 172/238 (72%), Gaps = 2/238 (0%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R SGR+ + +R+++LTR +K+AEGS LV+FGDT +L TA++ E+VP ++R+ GW+TA
Sbjct: 7 RPSGRRADALRKVALTRHYTKHAEGSVLVEFGDTKVLCTASVSERVPDFLRDRGQGWLTA 66
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
EYGMLPR+T R REA G+Q GR+QEIQR+IGRALR+V DL ALG R I IDCDVIQA
Sbjct: 67 EYGMLPRATHTRSDREAARGKQTGRTQEIQRLIGRALRAVFDLEALGPRTIHIDCDVIQA 126
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
DGGTRTA+ITGA+VA HD + + + HVAAIS G+ G P++DLDY E
Sbjct: 127 DGGTRTASITGAFVAAHDAVSKLIAA--GKITRSPITDHVAAISVGVYEGAPVLDLDYAE 184
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
DS D D N VMT +G VEVQG+AE FS+ A+L+LA+ IA+L++LQKDV+
Sbjct: 185 DSQCDTDMNVVMTGAGGFVEVQGTAEGVPFSRAEMNALLDLAQGGIAELVQLQKDVLG 242
>gi|289706339|ref|ZP_06502697.1| tRNA nucleotidyltransferase [Micrococcus luteus SK58]
gi|289556834|gb|EFD50167.1| tRNA nucleotidyltransferase [Micrococcus luteus SK58]
Length = 254
Score = 183 bits (464), Expect = 2e-44, Method: Composition-based stats.
Identities = 113/238 (47%), Positives = 162/238 (68%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R GR +++R I++TR S+ AEGS L++FG+T +L TA+ E VP W++ GW+TA
Sbjct: 10 RPDGRAVDELRPITITRGWSRQAEGSALIEFGNTRVLCTASFTEGVPRWLKGEGTGWVTA 69
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
EY MLPR+T R +RE+V GR GGR+ EI R+IGR+LR+V+DLSALG I++DCDV+ A
Sbjct: 70 EYAMLPRATNERNQRESVKGRIGGRTHEISRLIGRSLRAVIDLSALGENTIVLDCDVLDA 129
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
DGGTRTAAITGA+VAL + + + + VLK VAA+S G++ G P++DL Y E
Sbjct: 130 DGGTRTAAITGAYVALAEAVAWARREGILAKGAAVLKDSVAAVSVGIVDGVPVLDLPYVE 189
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
D + D N V+T +G VEVQG+AE A F++ +L+LA +L ++Q + ++
Sbjct: 190 DVKAETDMNVVVTGAGEFVEVQGTAEGAPFTRAELDTLLDLALIGTGELARIQAETLA 247
>gi|288956860|ref|YP_003447201.1| ribonuclease PH [Azospirillum sp. B510]
gi|288909168|dbj|BAI70657.1| ribonuclease PH [Azospirillum sp. B510]
Length = 239
Score = 183 bits (464), Expect = 2e-44, Method: Composition-based stats.
Identities = 129/239 (53%), Positives = 168/239 (70%), Gaps = 2/239 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR SGR +Q+R +SL S+YAEGSC+V+FG+TH+L TA+++E VP +++NT GW+T
Sbjct: 1 MRPSGRALDQLRTVSLEPGFSRYAEGSCMVRFGNTHVLCTASVDETVPRFLKNTGLGWVT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPRST +R REA G+Q GR+QEIQR+IGRALR+V D SA+G +QI IDCDVIQ
Sbjct: 61 AEYGMLPRSTHSRTDREAAKGKQSGRTQEIQRLIGRALRAVTDRSAMGEKQIKIDCDVIQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTAAITG++VALH + L VAA+SCG+ G ++DLDY
Sbjct: 121 ADGGTRTAAITGSYVALHLAF--QHLIQIGALKTMPLTDQVAAVSCGIYQGNAVLDLDYD 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
EDS DANFV+T IVE+QG+AE + FS+ F +L LA+ + +L LQK +
Sbjct: 179 EDSKAQADANFVLTGKAGIVEIQGTAEESPFSEPQFMELLALARKGVTELAALQKQALG 237
>gi|115350911|ref|YP_772750.1| ribonuclease PH [Burkholderia ambifaria AMMD]
gi|122323780|sp|Q0BHF7|RNPH_BURCM RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|115280899|gb|ABI86416.1| RNAse PH [Burkholderia ambifaria AMMD]
Length = 246
Score = 183 bits (464), Expect = 2e-44, Method: Composition-based stats.
Identities = 130/238 (54%), Positives = 172/238 (72%), Gaps = 2/238 (0%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R SGR+ +++R+++LTR +K+AEGS LV+FGDT ++ TA++ E+VP ++R+ GW+TA
Sbjct: 7 RPSGRRADELRKVALTRHYTKHAEGSVLVEFGDTKVICTASVAERVPEFLRDRGQGWLTA 66
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
EYGMLPR+T R REA G+Q GR+QEIQR+IGRALR+V DL ALG R I IDCDVIQA
Sbjct: 67 EYGMLPRATHTRSDREAARGKQTGRTQEIQRLIGRALRAVFDLEALGPRTIHIDCDVIQA 126
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
DGGTRTA+ITGA+VA HD + + + + HVAAIS G+ G P++DLDY E
Sbjct: 127 DGGTRTASITGAFVAAHDAVSKLIAAGKLARS--PITDHVAAISVGVYEGVPLLDLDYAE 184
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
DS D D N VMT +G VEVQG+AE FS+ A+L+LA+ I L++LQKDV+
Sbjct: 185 DSRCDTDMNVVMTGAGGFVEVQGTAEGVPFSRAEMNALLDLAQSGIGQLVQLQKDVLG 242
>gi|170698512|ref|ZP_02889583.1| ribonuclease PH [Burkholderia ambifaria IOP40-10]
gi|170136596|gb|EDT04853.1| ribonuclease PH [Burkholderia ambifaria IOP40-10]
Length = 246
Score = 183 bits (464), Expect = 2e-44, Method: Composition-based stats.
Identities = 132/242 (54%), Positives = 175/242 (72%), Gaps = 3/242 (1%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R SGR+ +++R+++LTR +K+AEGS LV+FGDT ++ TA++ E+VP ++R+ GW+TA
Sbjct: 7 RPSGRRADELRKVALTRHYTKHAEGSVLVEFGDTKVICTASVAERVPEFLRDRGQGWLTA 66
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
EYGMLPR+T R REA G+Q GR+QEIQR+IGRALR+V DL ALG R I IDCDVIQA
Sbjct: 67 EYGMLPRATHTRSDREAARGKQTGRTQEIQRLIGRALRAVFDLEALGPRTIHIDCDVIQA 126
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
DGGTRTA+ITGA+VA HD + + + + HVAAIS G+ G P++DLDY E
Sbjct: 127 DGGTRTASITGAFVAAHDAVSKLIAAGKLARS--PITDHVAAISVGVYEGVPLLDLDYAE 184
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI-SN 240
DS D D N VMT +G VEVQG+AE A FS+ A+L+LA+ I L++LQKDV+ +
Sbjct: 185 DSRCDTDMNVVMTGAGGFVEVQGTAEGAPFSRAEMNALLDLAQSGIGQLVQLQKDVLGAG 244
Query: 241 EV 242
V
Sbjct: 245 HV 246
>gi|239941573|ref|ZP_04693510.1| ribonuclease PH [Streptomyces roseosporus NRRL 15998]
gi|239988038|ref|ZP_04708702.1| ribonuclease PH [Streptomyces roseosporus NRRL 11379]
gi|291445016|ref|ZP_06584406.1| ribonuclease PH [Streptomyces roseosporus NRRL 15998]
gi|291347963|gb|EFE74867.1| ribonuclease PH [Streptomyces roseosporus NRRL 15998]
Length = 245
Score = 183 bits (464), Expect = 2e-44, Method: Composition-based stats.
Identities = 116/238 (48%), Positives = 155/238 (65%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R+ GR Q+R +++ R SK+AEGS L+ FGDT + TA++ E VP W + + GW+TA
Sbjct: 3 RIDGRTPEQLRPVTIERGWSKHAEGSVLISFGDTKVFCTASVTEGVPRWRKGSGEGWVTA 62
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
EY MLPRST R REAV G+ GGR+ EI R+IGR+LR+V+D ALG I++DCDV+QA
Sbjct: 63 EYSMLPRSTNTRGDREAVRGKIGGRTHEISRLIGRSLRAVIDYKALGENTIVLDCDVLQA 122
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
DGGTRTAAITGA+VAL D + + + L VAAIS G++ G P++DL Y E
Sbjct: 123 DGGTRTAAITGAYVALADAVTWAQGKKIVKAGRKPLTDTVAAISVGIVDGTPLLDLCYEE 182
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
D + D N V T G VEVQG+AE A F + ++L+LA DL LQ+D ++
Sbjct: 183 DVRAETDMNVVCTGDGRFVEVQGTAEGAPFDRKELGSLLDLATAGCVDLAALQRDALA 240
>gi|84386442|ref|ZP_00989470.1| ribonuclease PH [Vibrio splendidus 12B01]
gi|84378866|gb|EAP95721.1| ribonuclease PH [Vibrio splendidus 12B01]
Length = 238
Score = 183 bits (464), Expect = 2e-44, Method: Composition-based stats.
Identities = 117/240 (48%), Positives = 162/240 (67%), Gaps = 2/240 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR + R +Q+R I +TR + YAEGS LV+FG+T +L AT+EE VP W++ GW+T
Sbjct: 1 MRPNDRAVDQIRPIKITRNYTAYAEGSVLVEFGNTKVLCNATVEENVPRWLKGQGKGWVT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPR+T R +REA SG+QGGR+ EIQR+I R+LR+VVDL +G I +DCDVIQ
Sbjct: 61 AEYGMLPRATHTRNRREAASGKQGGRTMEIQRLIARSLRAVVDLKVMGEIMITVDCDVIQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+I+GA VA+ D + + +KGHVAA+S G++ + DL+Y
Sbjct: 121 ADGGTRTASISGASVAMADAINSLLAS--GKLKKNPMKGHVAAVSVGIVGAQALCDLEYV 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
EDS D D N VMT+ G ++E+QG+AE FS + +L LA I D+++ QK +++
Sbjct: 179 EDSAADTDMNVVMTEDGKMIEIQGTAEGEPFSHEELMQLLALANKGITDIVEAQKAALAD 238
>gi|116250149|ref|YP_765987.1| ribonuclease PH [Rhizobium leguminosarum bv. viciae 3841]
gi|166228307|sp|Q1MMD1|RNPH_RHIL3 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|115254797|emb|CAK05871.1| putative ribonuclease [Rhizobium leguminosarum bv. viciae 3841]
Length = 239
Score = 183 bits (464), Expect = 2e-44, Method: Composition-based stats.
Identities = 149/239 (62%), Positives = 192/239 (80%), Gaps = 1/239 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR SGR+ +QMR++S R SK+AEGSCLVKFGDTH+L TA+LEEK P W+RNT GW+T
Sbjct: 1 MRPSGRKIDQMRKVSFERNFSKHAEGSCLVKFGDTHVLCTASLEEKTPPWLRNTGKGWVT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPR+TG R+KREA +G+QGGR+QEIQR+IGR+LR+VVDL ALG RQI +DCDVIQ
Sbjct: 61 AEYGMLPRATGERMKREAAAGKQGGRTQEIQRLIGRSLRAVVDLQALGERQITLDCDVIQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+ITG W+AL+DCL+ ME + ++ +VLK HVAAISCG+ P++DLDY
Sbjct: 121 ADGGTRTASITGGWIALYDCLKWMESRNM-IKVDRVLKDHVAAISCGIFASQPVIDLDYL 179
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
EDS+ + DANFVMT +G IVE+QG+AE FS+ F +++ LA++ I +L+ LQK +
Sbjct: 180 EDSSAETDANFVMTGTGGIVEIQGTAEGTPFSEGEFTSLMQLARNGIGELVALQKQAVE 238
>gi|328471748|gb|EGF42625.1| ribonuclease PH [Vibrio parahaemolyticus 10329]
Length = 238
Score = 183 bits (464), Expect = 2e-44, Method: Composition-based stats.
Identities = 123/240 (51%), Positives = 168/240 (70%), Gaps = 2/240 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR + R+ +Q+R I +TR + YAEGS LV+FG+T +L AT+EE VP W++ GW+T
Sbjct: 1 MRPNDRKADQVRPIKITRNYTAYAEGSVLVEFGNTKVLCNATVEESVPRWLKGQGKGWVT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPR+T +R +REA +G+QGGR+ EIQR+I R+LR+VVDL A+G I +DCDVIQ
Sbjct: 61 AEYGMLPRATHSRTRREAANGKQGGRTMEIQRLIARSLRAVVDLQAMGEFMITVDCDVIQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+I+GA VA+ D QH+ D + +KGHVAA+S G+L + DL+Y
Sbjct: 121 ADGGTRTASISGASVAMADAFQHLVDS--GKLKANPMKGHVAAVSVGLLGDEVLCDLEYV 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
EDS D D N VMT+ G ++E+QG+AE FS + A+L AK I ++I QK ++N
Sbjct: 179 EDSAADTDMNVVMTEEGKMIEIQGTAEGEPFSHEQLMALLESAKVGITEIIAAQKAALAN 238
>gi|239917361|ref|YP_002956919.1| RNAse PH [Micrococcus luteus NCTC 2665]
gi|281414156|ref|ZP_06245898.1| RNAse PH [Micrococcus luteus NCTC 2665]
gi|239838568|gb|ACS30365.1| RNAse PH [Micrococcus luteus NCTC 2665]
Length = 254
Score = 183 bits (463), Expect = 2e-44, Method: Composition-based stats.
Identities = 113/238 (47%), Positives = 162/238 (68%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R GR +++R I++TR S+ AEGS L++FG+T +L TA+ E VP W++ GW+TA
Sbjct: 10 RPDGRAVDELRPITITRGWSRQAEGSALIEFGNTRVLCTASFTEGVPRWLKGEGTGWVTA 69
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
EY MLPR+T R +RE+V GR GGR+ EI R+IGR+LR+V+DLSALG I++DCDV+ A
Sbjct: 70 EYAMLPRATNERSQRESVKGRIGGRTHEISRLIGRSLRAVIDLSALGENTIVLDCDVLDA 129
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
DGGTRTAAITGA+VAL + + + + VLK VAA+S G++ G P++DL Y E
Sbjct: 130 DGGTRTAAITGAYVALAEAVAWARREGILAKGAAVLKDSVAAVSVGIVDGVPVLDLPYVE 189
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
D + D N V+T +G VEVQG+AE A F++ +L+LA +L ++Q + ++
Sbjct: 190 DVKAETDMNVVVTGAGEFVEVQGTAEGAPFTRAELDTLLDLALIGTGELARIQAETLA 247
>gi|262392601|ref|YP_003284455.1| ribonuclease PH [Vibrio sp. Ex25]
gi|262336195|gb|ACY49990.1| ribonuclease PH [Vibrio sp. Ex25]
Length = 238
Score = 183 bits (463), Expect = 2e-44, Method: Composition-based stats.
Identities = 123/240 (51%), Positives = 168/240 (70%), Gaps = 2/240 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR + R+ +Q+R I +TR + YAEGS LV+FG+T +L AT+EE VP W++ GW+T
Sbjct: 1 MRPNDRKADQVRPIKITRNYTAYAEGSVLVEFGNTKVLCNATVEESVPRWLKGQGKGWVT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPR+T +R +REA SG+QGGR+ EIQR+I R+LR+VVDL A+G I +DCDVIQ
Sbjct: 61 AEYGMLPRATHSRTRREAASGKQGGRTMEIQRLIARSLRAVVDLKAMGEFMITVDCDVIQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+I+GA VA+ D QH+ D + +KGHVAA+S G+L + DL+Y
Sbjct: 121 ADGGTRTASISGASVAMADAFQHLVDS--GKLKANPMKGHVAAVSVGLLGDDVLCDLEYV 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
EDS D D N VMT+ G ++E+QG+AE FS + A+L AK I +++ QK ++N
Sbjct: 179 EDSAADTDMNVVMTEEGKMIEIQGTAEGEPFSHEQLMALLESAKIGITEIVAAQKAALAN 238
>gi|26991970|ref|NP_747395.1| ribonuclease PH [Pseudomonas putida KT2440]
gi|148550402|ref|YP_001270504.1| ribonuclease PH [Pseudomonas putida F1]
gi|61216052|sp|Q88C89|RNPH_PSEPK RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|166228303|sp|A5WB10|RNPH_PSEP1 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|24987100|gb|AAN70859.1|AE016730_5 ribonuclease PH [Pseudomonas putida KT2440]
gi|148514460|gb|ABQ81320.1| RNAse PH [Pseudomonas putida F1]
Length = 240
Score = 183 bits (463), Expect = 2e-44, Method: Composition-based stats.
Identities = 120/239 (50%), Positives = 166/239 (69%), Gaps = 1/239 (0%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R SGR +Q+R I +TR +K+AEGS LV+FGDT ++ T ++E VP +++ GW+TA
Sbjct: 3 RPSGRVADQLRSIRITRNYTKHAEGSVLVEFGDTKVICTVSVENGVPRFLKGQGQGWLTA 62
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
EYGMLPRSTG R +REA G+QGGR+ EIQR+IGR+LR+ +D+S LG + +DCDVIQA
Sbjct: 63 EYGMLPRSTGERNQREASRGKQGGRTLEIQRLIGRSLRAALDMSKLGDITLYVDCDVIQA 122
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
DGGTRTA+ITGA VAL D L ++ + LK +AA+S GM G ++DLDY E
Sbjct: 123 DGGTRTASITGAMVALCDALAVIKKRG-GLKGGNPLKHMIAAVSVGMYQGEAVLDLDYLE 181
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
DS + D N VMT +G +EVQG+AE A F + F AML LA+ + ++ +LQ+ +++
Sbjct: 182 DSAAETDLNVVMTSAGGFIEVQGTAEGAPFQPEDFNAMLALAQKGMNEIFELQQAALAD 240
>gi|257454134|ref|ZP_05619407.1| ribonuclease PH [Enhydrobacter aerosaccus SK60]
gi|257448462|gb|EEV23432.1| ribonuclease PH [Enhydrobacter aerosaccus SK60]
Length = 238
Score = 183 bits (463), Expect = 2e-44, Method: Composition-based stats.
Identities = 120/239 (50%), Positives = 163/239 (68%), Gaps = 2/239 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR+ R+ NQ+R +S R +K+AEG+ LV +GDT +L TA++E +VP W++ T GWIT
Sbjct: 1 MRIDNRENNQLRPMSFVRNFTKHAEGAVLVSYGDTKVLCTASIETQVPRWLKGTGKGWIT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPR+T R +REA G+Q GR+QEIQR+IGR+LR++VDL LG I IDCDV+Q
Sbjct: 61 AEYGMLPRATHERTQREAAKGKQSGRTQEIQRLIGRSLRAMVDLEKLGENTIHIDCDVLQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+ITGA VAL D L+ ++ V G VAA+S G+ G ++DL+Y
Sbjct: 121 ADGGTRTASITGAAVALVDALEKLQAAKKLKADPLV--GLVAAVSVGIKNGEVLLDLNYS 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
EDS+ D D N VMT G +E+QG+AE F++ ML +A++ I LI Q+ V+
Sbjct: 179 EDSSCDTDLNVVMTQKGEFIEIQGTAEEKPFTRAQADEMLAIAEEGIKQLIAEQQAVLG 237
>gi|206561359|ref|YP_002232124.1| ribonuclease PH [Burkholderia cenocepacia J2315]
gi|226736893|sp|B4EBP8|RNPH_BURCJ RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|198037401|emb|CAR53336.1| ribonuclease PH [Burkholderia cenocepacia J2315]
Length = 246
Score = 183 bits (463), Expect = 2e-44, Method: Composition-based stats.
Identities = 131/238 (55%), Positives = 173/238 (72%), Gaps = 2/238 (0%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R SGR+ +++R+++LTR +K+AEGS LV+FGDT +L TA++ E+VP ++R GW+TA
Sbjct: 7 RPSGRRADELRKVALTRHYTKHAEGSVLVEFGDTKVLCTASVAERVPEFLRERGQGWLTA 66
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
EYGMLPR+T R REA G+Q GR+QEIQR+IGRALR+V DL ALG R + IDCDVIQA
Sbjct: 67 EYGMLPRATHTRSDREAARGKQTGRTQEIQRLIGRALRAVFDLEALGPRTLHIDCDVIQA 126
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
DGGTRTA+ITGA+VA HD + + + + HVAAIS G+ G P++DLDY E
Sbjct: 127 DGGTRTASITGAFVAAHDAVSTLIAAGKLTRS--PITDHVAAISVGVYEGAPVLDLDYAE 184
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
DS D D N VMT +G VEVQG+AE FS+ A+L+LA+ IA+L++LQKDV+
Sbjct: 185 DSRCDTDMNVVMTGAGGFVEVQGTAEGVPFSRAEMNALLDLAQGGIAELVQLQKDVLG 242
>gi|107022076|ref|YP_620403.1| ribonuclease PH [Burkholderia cenocepacia AU 1054]
gi|116689020|ref|YP_834643.1| ribonuclease PH [Burkholderia cenocepacia HI2424]
gi|170732309|ref|YP_001764256.1| ribonuclease PH [Burkholderia cenocepacia MC0-3]
gi|254246044|ref|ZP_04939365.1| RNase PH [Burkholderia cenocepacia PC184]
gi|123245179|sp|Q1BY75|RNPH_BURCA RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|166228269|sp|A0K5H3|RNPH_BURCH RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|226736892|sp|B1JXM2|RNPH_BURCC RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|105892265|gb|ABF75430.1| RNAse PH [Burkholderia cenocepacia AU 1054]
gi|116647109|gb|ABK07750.1| RNAse PH [Burkholderia cenocepacia HI2424]
gi|124870820|gb|EAY62536.1| RNase PH [Burkholderia cenocepacia PC184]
gi|169815551|gb|ACA90134.1| ribonuclease PH [Burkholderia cenocepacia MC0-3]
Length = 246
Score = 183 bits (463), Expect = 2e-44, Method: Composition-based stats.
Identities = 132/238 (55%), Positives = 173/238 (72%), Gaps = 2/238 (0%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R SGR+ +++R+++LTR +K+AEGS LV+FGDT +L TA++ E+VP ++R GW+TA
Sbjct: 7 RPSGRRADELRKVALTRHYTKHAEGSVLVEFGDTKVLCTASVAERVPEFLRERGQGWLTA 66
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
EYGMLPR+T R REA G+Q GR+QEIQR+IGRALR+V DL ALG R I IDCDVIQA
Sbjct: 67 EYGMLPRATHTRSDREAARGKQTGRTQEIQRLIGRALRAVFDLEALGPRTIHIDCDVIQA 126
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
DGGTRTA+ITGA+VA HD + + + + HVAAIS G+ G P++DLDY E
Sbjct: 127 DGGTRTASITGAFVAAHDAVSTLIAAGKLARS--PITDHVAAISVGVYEGAPVLDLDYAE 184
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
DS D D N VMT +G VEVQG+AE FS+ A+L+LA+ IA+L++LQKDV+
Sbjct: 185 DSRCDTDMNVVMTGAGGFVEVQGTAEGVPFSRAEMNALLDLAQGGIAELVQLQKDVLG 242
>gi|262377117|ref|ZP_06070342.1| ribonuclease PH [Acinetobacter lwoffii SH145]
gi|262307855|gb|EEY88993.1| ribonuclease PH [Acinetobacter lwoffii SH145]
Length = 238
Score = 183 bits (463), Expect = 2e-44, Method: Composition-based stats.
Identities = 120/239 (50%), Positives = 159/239 (66%), Gaps = 2/239 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR+ R +Q+RE+ +TR ++YAEGS LV+FG T +L TA+++ VP +++ GW+T
Sbjct: 1 MRIDQRALDQLREVKITRNYTRYAEGSVLVEFGHTKVLCTASVDSSVPRFLKGQGQGWVT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPRST R REA G+Q GR+QEIQR+IGR+LRS+VDL LG I IDCDVIQ
Sbjct: 61 AEYGMLPRSTHTRSDREAARGKQSGRTQEIQRLIGRSLRSMVDLKKLGENTITIDCDVIQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTAAITGA VAL D + K LKG VAA+S G+ ++DL Y
Sbjct: 121 ADGGTRTAAITGAAVALVDAMN--VLLERKKIKHDPLKGLVAAVSVGIFKDEVLLDLCYE 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
EDS D N VMT +G +E+QG+AE F++ AML +A+ I +L+K Q++ +
Sbjct: 179 EDSNCQTDLNVVMTQAGEFIEIQGTAEDKPFTRAQSNAMLEMAEKGIQELVKKQQEALG 237
>gi|330815847|ref|YP_004359552.1| Ribonuclease PH [Burkholderia gladioli BSR3]
gi|327368240|gb|AEA59596.1| Ribonuclease PH [Burkholderia gladioli BSR3]
Length = 243
Score = 183 bits (463), Expect = 2e-44, Method: Composition-based stats.
Identities = 129/239 (53%), Positives = 169/239 (70%), Gaps = 2/239 (0%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R SGR +Q+RE+ LTR +K+AEGS LV+FGDT ++ TA++ E+VP ++R+ GW+TA
Sbjct: 7 RPSGRPADQLREVRLTRHYTKHAEGSVLVEFGDTKVICTASVVERVPEFLRDRGQGWLTA 66
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
EYGMLPR+T R REA G+Q GR+QEIQR+IGRALR+VVDL LG+R I IDCDVIQA
Sbjct: 67 EYGMLPRATHTRSDREAARGKQTGRTQEIQRLIGRALRAVVDLEQLGARTIHIDCDVIQA 126
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
DGGTRTA+ITGA+VA+ D + + + VAAIS G+ G P++DLDY E
Sbjct: 127 DGGTRTASITGAFVAVQDAVAKLIAAGKLASS--PITDSVAAISVGVYQGTPVLDLDYAE 184
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
DS D D N VMT G +VEVQG+AE F++D A+L+LA+ I +LI LQK + +
Sbjct: 185 DSRCDTDMNVVMTGKGGLVEVQGTAEGVPFTRDEMNALLDLAQKGIGELIALQKAALGD 243
>gi|91225015|ref|ZP_01260274.1| ribonuclease PH [Vibrio alginolyticus 12G01]
gi|91190261|gb|EAS76531.1| ribonuclease PH [Vibrio alginolyticus 12G01]
Length = 238
Score = 183 bits (463), Expect = 2e-44, Method: Composition-based stats.
Identities = 124/240 (51%), Positives = 168/240 (70%), Gaps = 2/240 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR + R+ +Q+R I +TR + YAEGS LV+FG+T +L AT+EE VP W++ GWIT
Sbjct: 1 MRPNDRKADQVRPIKITRNYTAYAEGSVLVEFGNTKVLCNATVEESVPRWLKGQGKGWIT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPR+T +R +REA SG+QGGR+ EIQR+I R+LR+VVDL A+G I +DCDVIQ
Sbjct: 61 AEYGMLPRATHSRTRREAASGKQGGRTMEIQRLIARSLRAVVDLKAMGEFMITVDCDVIQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+I+GA VA+ D QH+ D + +KGHVAA+S G+L + DL+Y
Sbjct: 121 ADGGTRTASISGASVAMADAFQHLVDS--GKLKANPMKGHVAAVSVGLLGDEVLCDLEYV 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
EDS D D N VMT+ G ++E+QG+AE FS + A+L AK I +++ QK ++N
Sbjct: 179 EDSAADTDMNVVMTEEGKMIEIQGTAEGEPFSHEQLMALLESAKVGITEIVAAQKAALAN 238
>gi|300311449|ref|YP_003775541.1| tRNA nucleotidyltransferase [Herbaspirillum seropedicae SmR1]
gi|124483528|emb|CAM32637.1| tRNA nucleotidyltransferase (ribonuclease PH) protein
[Herbaspirillum seropedicae]
gi|300074234|gb|ADJ63633.1| tRNA nucleotidyltransferase (ribonuclease PH) protein
[Herbaspirillum seropedicae SmR1]
Length = 242
Score = 183 bits (463), Expect = 2e-44, Method: Composition-based stats.
Identities = 130/238 (54%), Positives = 167/238 (70%), Gaps = 2/238 (0%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R SGR Q+RE+ LTR+ +K+AEGS LV+FGDT +L TA++EEKVP +++ GW+TA
Sbjct: 6 RPSGRSPEQLREVRLTRQYTKHAEGSVLVEFGDTRVLCTASIEEKVPGFLKGKGQGWLTA 65
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
EYGMLPRST R+ REA G+Q GR+QEIQR+IGRALR+ DL A G R + +DCDV+QA
Sbjct: 66 EYGMLPRSTHTRMDREAAKGKQSGRTQEIQRLIGRALRAAFDLEAFGERTLQLDCDVLQA 125
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
DGGTRTAAITGA VA +D ++ + +K VAAIS G+ G P++DLDY E
Sbjct: 126 DGGTRTAAITGAMVAAYDAFAGLKS--QGLIEAIPVKHFVAAISVGVFKGVPVLDLDYPE 183
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
DS D D N VMTD+GH VEVQG+AE A F + A+L+LA+ IA L LQ+ +
Sbjct: 184 DSDCDTDMNVVMTDAGHFVEVQGTAEGAAFDRATLNALLDLAQQGIATLNGLQRQALG 241
>gi|153216091|ref|ZP_01950265.1| ribonuclease PH [Vibrio cholerae 1587]
gi|153819951|ref|ZP_01972618.1| ribonuclease PH [Vibrio cholerae NCTC 8457]
gi|153821600|ref|ZP_01974267.1| ribonuclease PH [Vibrio cholerae B33]
gi|153825939|ref|ZP_01978606.1| ribonuclease PH [Vibrio cholerae MZO-2]
gi|227080431|ref|YP_002808982.1| ribonuclease PH [Vibrio cholerae M66-2]
gi|229506989|ref|ZP_04396497.1| ribonuclease PH [Vibrio cholerae BX 330286]
gi|229509359|ref|ZP_04398842.1| ribonuclease PH [Vibrio cholerae B33]
gi|229512476|ref|ZP_04401948.1| ribonuclease PH [Vibrio cholerae TMA 21]
gi|229516306|ref|ZP_04405754.1| ribonuclease PH [Vibrio cholerae RC9]
gi|229527287|ref|ZP_04416680.1| ribonuclease PH [Vibrio cholerae 12129(1)]
gi|229606497|ref|YP_002877145.1| ribonuclease PH [Vibrio cholerae MJ-1236]
gi|254291599|ref|ZP_04962388.1| ribonuclease PH [Vibrio cholerae AM-19226]
gi|297581663|ref|ZP_06943585.1| ribonuclease PH [Vibrio cholerae RC385]
gi|298500852|ref|ZP_07010654.1| ribonuclease PH [Vibrio cholerae MAK 757]
gi|9654617|gb|AAF93386.1| ribonuclease PH [Vibrio cholerae O1 biovar El Tor str. N16961]
gi|124114467|gb|EAY33287.1| ribonuclease PH [Vibrio cholerae 1587]
gi|126509515|gb|EAZ72109.1| ribonuclease PH [Vibrio cholerae NCTC 8457]
gi|126520887|gb|EAZ78110.1| ribonuclease PH [Vibrio cholerae B33]
gi|149740347|gb|EDM54483.1| ribonuclease PH [Vibrio cholerae MZO-2]
gi|150422456|gb|EDN14414.1| ribonuclease PH [Vibrio cholerae AM-19226]
gi|227008319|gb|ACP04531.1| ribonuclease PH [Vibrio cholerae M66-2]
gi|229335295|gb|EEO00779.1| ribonuclease PH [Vibrio cholerae 12129(1)]
gi|229346732|gb|EEO11702.1| ribonuclease PH [Vibrio cholerae RC9]
gi|229350475|gb|EEO15423.1| ribonuclease PH [Vibrio cholerae TMA 21]
gi|229353674|gb|EEO18611.1| ribonuclease PH [Vibrio cholerae B33]
gi|229356094|gb|EEO21013.1| ribonuclease PH [Vibrio cholerae BX 330286]
gi|229369152|gb|ACQ59575.1| ribonuclease PH [Vibrio cholerae MJ-1236]
gi|297534070|gb|EFH72909.1| ribonuclease PH [Vibrio cholerae RC385]
gi|297540356|gb|EFH76415.1| ribonuclease PH [Vibrio cholerae MAK 757]
Length = 257
Score = 183 bits (463), Expect = 2e-44, Method: Composition-based stats.
Identities = 121/238 (50%), Positives = 163/238 (68%), Gaps = 2/238 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR R +Q+R I +TR + YAEGS LV+FG+T +L A++EE VP W++ GW+T
Sbjct: 20 MRPDNRAADQVRPIKITRHYTAYAEGSVLVEFGNTKVLCNASIEEGVPRWLKGQGKGWVT 79
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPR+T +R +REA +G+QGGR+ EIQR+I R+LR+VVDL A+G I +DCDVIQ
Sbjct: 80 AEYGMLPRATHSRTRREATNGKQGGRTMEIQRLIARSLRAVVDLEAMGEIMITVDCDVIQ 139
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+ITGA VAL D H+ +KGHVAA+S G+L + DL+Y
Sbjct: 140 ADGGTRTASITGASVALADAFAHLIAK--GQLKKNPMKGHVAAVSVGILGEDVLCDLEYV 197
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
EDS D D N VMT+ G ++E+QG+AE FS + +L +AK IAD++ +QK +
Sbjct: 198 EDSAADTDMNVVMTEEGKMIEIQGTAEGEPFSHEQLLELLAVAKKGIADIVAVQKASL 255
>gi|171315534|ref|ZP_02904770.1| ribonuclease PH [Burkholderia ambifaria MEX-5]
gi|172059924|ref|YP_001807576.1| ribonuclease PH [Burkholderia ambifaria MC40-6]
gi|226736891|sp|B1YUN3|RNPH_BURA4 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|171099371|gb|EDT44109.1| ribonuclease PH [Burkholderia ambifaria MEX-5]
gi|171992441|gb|ACB63360.1| ribonuclease PH [Burkholderia ambifaria MC40-6]
Length = 246
Score = 183 bits (463), Expect = 2e-44, Method: Composition-based stats.
Identities = 131/242 (54%), Positives = 174/242 (71%), Gaps = 3/242 (1%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R SGR+ +++R+++LTR +K+AEGS LV+FGDT ++ TA++ E+VP ++R+ GW+TA
Sbjct: 7 RPSGRRADELRKVALTRHYTKHAEGSVLVEFGDTKVICTASVAERVPEFLRDRGQGWLTA 66
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
EYGMLPR+T R REA G+Q GR+QEIQR+IGRALR+V DL ALG R I IDCDVIQA
Sbjct: 67 EYGMLPRATHTRSDREAARGKQTGRTQEIQRLIGRALRAVFDLEALGPRTIHIDCDVIQA 126
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
DGGTRTA+ITGA+VA HD + + + + HVAAIS G+ G P++DLDY E
Sbjct: 127 DGGTRTASITGAFVAAHDAVSKLIAAGKLARS--PITDHVAAISVGVYEGVPLLDLDYAE 184
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI-SN 240
DS D D N VMT +G VEVQG+AE FS+ A+L+LA+ I L++LQKDV+ +
Sbjct: 185 DSRCDTDMNVVMTGAGGFVEVQGTAEGVPFSRAEMNALLDLAQSGIGQLVQLQKDVLGAG 244
Query: 241 EV 242
V
Sbjct: 245 HV 246
>gi|294501440|ref|YP_003565140.1| ribonuclease PH [Bacillus megaterium QM B1551]
gi|294351377|gb|ADE71706.1| ribonuclease PH [Bacillus megaterium QM B1551]
Length = 248
Score = 183 bits (463), Expect = 3e-44, Method: Composition-based stats.
Identities = 113/238 (47%), Positives = 161/238 (67%), Gaps = 2/238 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MRL GR+ N++R +SL K+ EGS L+ GDT ++ TA+++++VP ++R GWIT
Sbjct: 1 MRLDGREFNELRPVSLHTSYLKHPEGSVLISVGDTKVICTASIDDRVPPFMRGQGKGWIT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEY MLPR+T R RE+ G+ GR+ EIQR+IGRALRSVVDL +G + I IDCDVIQ
Sbjct: 61 AEYSMLPRATAQRNIRESSKGKVTGRTMEIQRLIGRALRSVVDLEKVGEKTIWIDCDVIQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+ITGA+VA+ + + + ++ ++AA S G+ I+DL+Y
Sbjct: 121 ADGGTRTASITGAFVAMVLAFGKLVEEN--KLTEIPIRDYLAATSVGIHGENSILDLNYE 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
EDST +VD N VMT SG VE+QG+ E +TFS++ +L+L + + LI+ QK+V+
Sbjct: 179 EDSTAEVDMNIVMTGSGQFVELQGTGEESTFSREQLNHLLDLGEKGVYQLIEQQKEVL 236
>gi|238026484|ref|YP_002910715.1| ribonuclease PH [Burkholderia glumae BGR1]
gi|237875678|gb|ACR28011.1| Ribonuclease PH [Burkholderia glumae BGR1]
Length = 243
Score = 183 bits (463), Expect = 3e-44, Method: Composition-based stats.
Identities = 130/236 (55%), Positives = 169/236 (71%), Gaps = 2/236 (0%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R SGRQ +Q+RE+ LTR +K+AEGS LV+FGDT ++ TA++ E+VP ++R+ GW+TA
Sbjct: 7 RPSGRQADQLREVRLTRHYTKHAEGSVLVEFGDTKVICTASVAERVPEFLRDRGQGWLTA 66
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
EYGMLPR+T R REA G+Q GR+QEIQR+IGRALR+VVDL LG R I IDCDVIQA
Sbjct: 67 EYGMLPRATHTRSDREAARGKQTGRTQEIQRLIGRALRAVVDLEHLGPRTIHIDCDVIQA 126
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
DGGTRTA+ITGA+VA+ D + + + + VAAIS G+ G P++DLDY E
Sbjct: 127 DGGTRTASITGAFVAVQDAVAKLVADGKLPRS--PISDSVAAISVGVYQGTPLLDLDYAE 184
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
DS D D N VMT +G +VEVQG+AE A F++ A+L+LA+ I +LI LQK
Sbjct: 185 DSRCDTDMNVVMTGAGGLVEVQGTAEGAPFTRAEMDALLDLAQKGIGELIALQKAA 240
>gi|126666552|ref|ZP_01737530.1| tRNA nucleotidyltransferase [Marinobacter sp. ELB17]
gi|126628940|gb|EAZ99559.1| tRNA nucleotidyltransferase [Marinobacter sp. ELB17]
Length = 238
Score = 183 bits (463), Expect = 3e-44, Method: Composition-based stats.
Identities = 130/239 (54%), Positives = 165/239 (69%), Gaps = 2/239 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR SGR Q R+I +TR +++AEGS L++FGDT ++ TA++E KVP ++R GWIT
Sbjct: 1 MRPSGRTPEQPRDIRITRNYTRHAEGSVLIEFGDTKVICTASVENKVPPFLRGEGQGWIT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPRST +R+ REA G+QGGR+ EIQR+IGR+LR+ VDL ALG I IDCDVIQ
Sbjct: 61 AEYGMLPRSTNSRMGREAARGKQGGRTVEIQRLIGRSLRAAVDLKALGEHTITIDCDVIQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTAAITG VAL D L + + LK VAA+S G+ G P+VDLDY
Sbjct: 121 ADGGTRTAAITGGCVALVDALNFLVAQKRLKKS--PLKQMVAAVSVGVFKGKPVVDLDYP 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
EDS + D N VMTD G +E+QG+AE A F+Q+ +ML LAK I L LQ + ++
Sbjct: 179 EDSVAETDMNVVMTDKGGFIEIQGTAEGAPFAQEELDSMLVLAKQGIETLFALQNEALN 237
>gi|229521070|ref|ZP_04410491.1| ribonuclease PH [Vibrio cholerae TM 11079-80]
gi|229341955|gb|EEO06956.1| ribonuclease PH [Vibrio cholerae TM 11079-80]
Length = 257
Score = 183 bits (463), Expect = 3e-44, Method: Composition-based stats.
Identities = 121/238 (50%), Positives = 163/238 (68%), Gaps = 2/238 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR R +Q+R I +TR + YAEGS LV+FG+T +L A++EE VP W++ GW+T
Sbjct: 20 MRPDNRAADQVRPIKITRHYTAYAEGSVLVEFGNTKVLCNASIEEGVPRWLKGQGKGWVT 79
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPR+T +R +REA +G+QGGR+ EIQR+I R+LR+VVDL A+G I +DCDVIQ
Sbjct: 80 AEYGMLPRATHSRTRREATNGKQGGRTMEIQRLIARSLRAVVDLEAMGEIMITVDCDVIQ 139
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+ITGA VAL D H+ +KGHVAA+S G+L + DL+Y
Sbjct: 140 ADGGTRTASITGASVALADAFAHLIAK--GQLKKNPMKGHVAAVSVGILGEDVLCDLEYV 197
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
EDS D D N VMT+ G ++E+QG+AE FS + +L +AK IAD++ +QK +
Sbjct: 198 EDSAADTDMNVVMTEEGKMIEIQGTAEGEPFSHEQLLELLAVAKKGIADIVAVQKASL 255
>gi|254472318|ref|ZP_05085718.1| ribonuclease PH [Pseudovibrio sp. JE062]
gi|211958601|gb|EEA93801.1| ribonuclease PH [Pseudovibrio sp. JE062]
Length = 239
Score = 183 bits (463), Expect = 3e-44, Method: Composition-based stats.
Identities = 144/234 (61%), Positives = 183/234 (78%), Gaps = 1/234 (0%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R S R +MR +SL R V+K+AEGSCL+KFGDTH+L TA+LEE+VP W+R GW+TA
Sbjct: 3 RPSKRTPEEMRPVSLERGVAKHAEGSCLIKFGDTHVLCTASLEERVPPWLRGQNRGWVTA 62
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
EYGMLPR+T +R++RE+ +G+Q GR+QEIQR+IGR+LR+VVDL ALG RQI +DCDVIQA
Sbjct: 63 EYGMLPRATHDRMRRESSAGKQSGRTQEIQRLIGRSLRAVVDLGALGERQITVDCDVIQA 122
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
DGGTRTA+ITGAWVALHDCL+ ME + +VLK H+AAISCG+ G P+ DLDY E
Sbjct: 123 DGGTRTASITGAWVALHDCLKWMEARDM-VKTDKVLKDHIAAISCGIYEGTPVADLDYAE 181
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
DS+ D DANFVMT G IVE+QG+AE FS++ ++ LAK I+ L++LQK
Sbjct: 182 DSSADTDANFVMTGKGGIVEIQGTAEGEPFSEEELGQLMGLAKQSISKLVELQK 235
>gi|90421849|ref|YP_530219.1| ribonuclease PH [Rhodopseudomonas palustris BisB18]
gi|122477603|sp|Q21CI6|RNPH_RHOPB RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|90103863|gb|ABD85900.1| RNAse PH [Rhodopseudomonas palustris BisB18]
Length = 239
Score = 183 bits (463), Expect = 3e-44, Method: Composition-based stats.
Identities = 142/239 (59%), Positives = 182/239 (76%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR S R +++R +SL R V KYAEGSC+VKFGDTH+L TATLE+++P W++ GW+T
Sbjct: 1 MRPSRRAPDELRAVSLERGVVKYAEGSCMVKFGDTHVLVTATLEDRLPPWLKGQGRGWVT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPR+T R +REA +G+Q GR+ EIQR+IGR+LR+ VDL ALG RQI +DCDVIQ
Sbjct: 61 AEYGMLPRATLERTRREASAGKQNGRTVEIQRLIGRSLRATVDLQALGERQITVDCDVIQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+ITGAWVAL DC+ M+ + + VL+ +VAAISCG+ G P++DLDY
Sbjct: 121 ADGGTRTASITGAWVALADCIGWMKTRNMFKGTAPVLRDNVAAISCGIYNGTPVLDLDYA 180
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
EDS D DANFVMT G I+EVQG+AE+ FSQD F A++ LAK +A L+ LQK ++
Sbjct: 181 EDSEADTDANFVMTGDGRIIEVQGTAEKTPFSQDEFLALMALAKKGVARLVDLQKMAVA 239
>gi|262404946|ref|ZP_06081498.1| ribonuclease PH [Vibrio sp. RC586]
gi|262348785|gb|EEY97926.1| ribonuclease PH [Vibrio sp. RC586]
Length = 238
Score = 182 bits (462), Expect = 3e-44, Method: Composition-based stats.
Identities = 120/238 (50%), Positives = 162/238 (68%), Gaps = 2/238 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR R +Q+R I +TR + YAEGS LV+FG+T +L A++EE VP W++ GW+T
Sbjct: 1 MRPDNRAADQVRPIKITRNYTAYAEGSVLVEFGNTKVLCNASIEEGVPRWLKGQGKGWVT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPR+T +R +REA +G+QGGR+ EIQR+I R+LR+VVDL A+ I +DCDVIQ
Sbjct: 61 AEYGMLPRATHSRTRREATNGKQGGRTMEIQRLIARSLRAVVDLEAMSEIMITVDCDVIQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+ITGA VAL D H+ +KGHVAA+S G+L + DL+Y
Sbjct: 121 ADGGTRTASITGASVALADAFAHLMAK--GQLKKNPMKGHVAAVSVGILGENVLCDLEYV 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
EDS D D N VMT+ G ++E+QG+AE FS + +L +AK IAD++ +QK +
Sbjct: 179 EDSAADTDMNVVMTEEGKMIEIQGTAEGEPFSHEQLLELLAVAKKGIADIVAVQKASL 236
>gi|229524838|ref|ZP_04414243.1| ribonuclease PH [Vibrio cholerae bv. albensis VL426]
gi|229338419|gb|EEO03436.1| ribonuclease PH [Vibrio cholerae bv. albensis VL426]
Length = 257
Score = 182 bits (462), Expect = 3e-44, Method: Composition-based stats.
Identities = 121/238 (50%), Positives = 163/238 (68%), Gaps = 2/238 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR R +Q+R I +TR + YAEGS LV+FG+T +L A++EE VP W++ GW+T
Sbjct: 20 MRPDNRAADQVRPIKITRHYTAYAEGSVLVEFGNTKVLCNASIEEGVPRWLKGQGKGWVT 79
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPR+T +R +REA +G+QGGR+ EIQR+I R+LR+VVDL A+G I +DCDVIQ
Sbjct: 80 AEYGMLPRATHSRTRREATNGKQGGRTMEIQRLIARSLRAVVDLEAMGEIMITVDCDVIQ 139
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+ITGA VAL D H+ +KGHVAA+S G+L + DL+Y
Sbjct: 140 ADGGTRTASITGASVALADAFAHLMAK--GQLKKNPMKGHVAAVSVGILGEDVLCDLEYV 197
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
EDS D D N VMT+ G ++E+QG+AE FS + +L +AK IAD++ +QK +
Sbjct: 198 EDSAADTDMNVVMTEEGKMIEIQGTAEGEPFSHEQLLELLAVAKKGIADIVAVQKASL 255
>gi|153800847|ref|ZP_01955433.1| ribonuclease PH [Vibrio cholerae MZO-3]
gi|124123678|gb|EAY42421.1| ribonuclease PH [Vibrio cholerae MZO-3]
Length = 257
Score = 182 bits (462), Expect = 3e-44, Method: Composition-based stats.
Identities = 122/238 (51%), Positives = 164/238 (68%), Gaps = 2/238 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR R +Q+R I +TR + YAEGS LV+FG+T +L A++EE VP W++ GW+T
Sbjct: 20 MRPDNRAADQVRPIKITRHYTAYAEGSVLVEFGNTKVLCNASIEEGVPRWLKGQGKGWVT 79
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPR+T +R +REA +G+QGGR+ EIQR+I R+LR+VVDL A+G I +DCDVIQ
Sbjct: 80 AEYGMLPRATHSRTRREATNGKQGGRTMEIQRLIARSLRAVVDLEAMGEIMITVDCDVIQ 139
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+ITGA VAL D H+ +KGHVAA+S G+L G + DL+Y
Sbjct: 140 ADGGTRTASITGASVALADAFTHLIAK--GQLKKNPMKGHVAAVSVGILGGDVLCDLEYV 197
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
EDS D D N VMT+ G ++E+QG+AE FS + +L +AK IAD++ +QK +
Sbjct: 198 EDSAADTDMNVVMTEEGKMIEIQGTAEGEPFSHEQLLELLAVAKKGIADIVAVQKASL 255
>gi|260906180|ref|ZP_05914502.1| ribonuclease PH [Brevibacterium linens BL2]
Length = 240
Score = 182 bits (462), Expect = 3e-44, Method: Composition-based stats.
Identities = 117/240 (48%), Positives = 160/240 (66%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR GR +++RE+++TR AEGS LV+FG+T +L A+L VP W++ GW+T
Sbjct: 1 MRADGRNADELREVTITRNWINTAEGSALVEFGNTRVLVAASLTAGVPRWLKGQGRGWVT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEY MLPR+T +R RE+V G+ GGR+ EI R+IGR+LR+V+DL LG +++DCDV+Q
Sbjct: 61 AEYAMLPRATDSRNTRESVKGKLGGRTHEISRLIGRSLRAVIDLDKLGENTLVLDCDVLQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+ITGA+VAL D + + +K +AAIS G++ G P++DL Y
Sbjct: 121 ADGGTRTASITGAYVALADAIDKGRSTGIIPAANNPIKDSIAAISVGIIDGEPVLDLPYV 180
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
EDS D D N VMT SG VEVQG+AE A F +D +L+LA ADL +Q +V+S
Sbjct: 181 EDSRADTDMNVVMTGSGQFVEVQGTAEGAPFDRDELGTLLDLAAKGCADLTGIQSEVLSK 240
>gi|294142837|ref|YP_003558815.1| ribonuclease PH [Shewanella violacea DSS12]
gi|293329306|dbj|BAJ04037.1| ribonuclease PH [Shewanella violacea DSS12]
Length = 237
Score = 182 bits (462), Expect = 3e-44, Method: Composition-based stats.
Identities = 122/239 (51%), Positives = 164/239 (68%), Gaps = 2/239 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR S R Q R +++TR+ + +AEGS LV+FG+T +L TA+ EE VP +++ GW+T
Sbjct: 1 MRPSDRTPAQSRPVTITRQFTAHAEGSVLVEFGETKVLCTASFEEGVPRFLKGKGQGWVT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPRST R+ REA G+Q GR+QEIQR+IGR+LR+ VD+ ALG I+IDCDVIQ
Sbjct: 61 AEYGMLPRSTHTRMNREAARGKQSGRTQEIQRLIGRSLRAAVDMKALGENTIVIDCDVIQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTAAITGA VAL D L + LK +AA+S G+ G PI DL+Y
Sbjct: 121 ADGGTRTAAITGACVALVDALNW--ARGKGILKTNPLKFLIAAVSVGIYKGEPICDLEYI 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
EDS + D N VMT++G ++E+QG+AE FS + +ML LAK I +++ +QK ++
Sbjct: 179 EDSAAETDMNVVMTETGKMIEIQGTAEGEPFSHEELLSMLELAKHGIREIVDVQKAALN 237
>gi|261405343|ref|YP_003241584.1| ribonuclease PH [Paenibacillus sp. Y412MC10]
gi|261281806|gb|ACX63777.1| ribonuclease PH [Paenibacillus sp. Y412MC10]
Length = 252
Score = 182 bits (462), Expect = 3e-44, Method: Composition-based stats.
Identities = 114/239 (47%), Positives = 164/239 (68%), Gaps = 2/239 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR +GR+ +++R ++L+ V+KYAEGS ++ GDT +L TAT++EKVP +++ GW+T
Sbjct: 1 MRSNGRKSDELRPMNLSTHVNKYAEGSVYIEMGDTKVLITATVDEKVPPFLKGQGKGWVT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEY MLPR+T +R +REA G+ GR+ EIQR+IGRALRSVV+L ALG R I +DCDVIQ
Sbjct: 61 AEYSMLPRATQSRNQREANRGKLSGRTMEIQRLIGRALRSVVNLHALGERTITLDCDVIQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRT +ITGA+VAL + + + + ++A+IS G+ G ++DL+Y
Sbjct: 121 ADGGTRTTSITGAFVALAIAVNKIAEQHKLAV--FPITDYLASISVGIAGGQALLDLNYE 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
EDS VD N VMT SG VEVQG+ E + FS++ +L L + I +LI+ Q++ +
Sbjct: 179 EDSKAKVDMNLVMTGSGKFVEVQGTGEESPFSREELDQILELGEQGIRELIERQQEALG 237
>gi|256004871|ref|ZP_05429845.1| ribonuclease PH [Clostridium thermocellum DSM 2360]
gi|281416900|ref|ZP_06247920.1| ribonuclease PH [Clostridium thermocellum JW20]
gi|255991181|gb|EEU01289.1| ribonuclease PH [Clostridium thermocellum DSM 2360]
gi|281408302|gb|EFB38560.1| ribonuclease PH [Clostridium thermocellum JW20]
gi|316941052|gb|ADU75086.1| ribonuclease PH [Clostridium thermocellum DSM 1313]
Length = 263
Score = 182 bits (462), Expect = 3e-44, Method: Composition-based stats.
Identities = 112/240 (46%), Positives = 161/240 (67%), Gaps = 2/240 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+R+ GR ++ +R + +TR K+AEGS L++ GDT ++ TAT+++KVP + +NT GW+T
Sbjct: 2 LRIDGRGQSDLRPVKITRNYIKHAEGSVLIEMGDTKVICTATVDDKVPPFKKNTGEGWVT 61
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEY MLPR+T R R+ + GRSQEIQR+IGRALRSVV+L+ LG R+IIIDCDVIQ
Sbjct: 62 AEYSMLPRATAARNPRDISKLKLSGRSQEIQRLIGRALRSVVNLNLLGEREIIIDCDVIQ 121
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+ITG +VAL D + + D + +AA+S G++ G ++DL Y
Sbjct: 122 ADGGTRTASITGGFVALVDACKKLVDD--GIIEKIPVTDFLAAVSVGIVDGVEMLDLCYM 179
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
EDS D N VMT G +E+Q + E+ F ++ F +L+ A+ I+ LI++QKD +
Sbjct: 180 EDSNAATDMNVVMTSKGEFIEIQATGEQLPFKKEQFDKLLSFAEKGISQLIEIQKDALGQ 239
>gi|329925260|ref|ZP_08280203.1| tRNA nucleotidyltransferase [Paenibacillus sp. HGF5]
gi|328940093|gb|EGG36426.1| tRNA nucleotidyltransferase [Paenibacillus sp. HGF5]
Length = 252
Score = 182 bits (462), Expect = 3e-44, Method: Composition-based stats.
Identities = 114/239 (47%), Positives = 164/239 (68%), Gaps = 2/239 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR +GR+ +++R ++L+ V+KYAEGS ++ GDT +L TAT++EKVP +++ GW+T
Sbjct: 1 MRSNGRKSDELRPMNLSTHVNKYAEGSVYIEMGDTKVLITATVDEKVPPFLKGQGKGWVT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEY MLPR+T +R +REA G+ GR+ EIQR+IGRALRSVV+L ALG R I +DCDVIQ
Sbjct: 61 AEYSMLPRATQSRNQREANRGKLSGRTMEIQRLIGRALRSVVNLHALGERTITLDCDVIQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRT +ITGA+VAL + + + + ++A+IS G+ G ++DL+Y
Sbjct: 121 ADGGTRTTSITGAFVALAIAVNKIAEQHKLAV--FPITDYLASISVGIAGGQALLDLNYE 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
EDS VD N VMT SG VEVQG+ E + FS++ +L L + I +LI+ Q++ +
Sbjct: 179 EDSKAKVDMNLVMTGSGKFVEVQGTGEESPFSREELDQILELGEQGIRELIERQQEALG 237
>gi|83594970|ref|YP_428722.1| ribonuclease PH [Rhodospirillum rubrum ATCC 11170]
gi|123525443|sp|Q2RN60|RNPH_RHORT RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|83577884|gb|ABC24435.1| RNAse PH [Rhodospirillum rubrum ATCC 11170]
Length = 240
Score = 182 bits (462), Expect = 3e-44, Method: Composition-based stats.
Identities = 134/240 (55%), Positives = 169/240 (70%), Gaps = 2/240 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR SGR + +R I L SK+AEGSC+ +FGDTH+L TA++EE+VP W+R GW+T
Sbjct: 1 MRPSGRAVDSLRSIVLEPGYSKHAEGSCMARFGDTHVLCTASIEERVPGWMRGGGKGWVT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPRST R REA GRQ GR+QEIQR+IGR+LRSV DL +G QI +DCDVIQ
Sbjct: 61 AEYGMLPRSTHTRTDREAARGRQSGRTQEIQRLIGRSLRSVTDLKKIGEIQIRLDCDVIQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTAAITG+WVAL+ L E L HVAA+SCG+ G ++DLDY
Sbjct: 121 ADGGTRTAAITGSWVALYQALARFEKLGLGAL--PPLTDHVAAVSCGLCDGVAVLDLDYA 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
EDST DANFV+T +G IVE+QG+AE + F+Q F +L LA+ I +L+ LQK +++
Sbjct: 179 EDSTAQADANFVLTGTGGIVEIQGTAETSPFAQAQFMELLALAQKGITELVALQKAALAS 238
>gi|149927822|ref|ZP_01916073.1| ribonuclease PH [Limnobacter sp. MED105]
gi|149823444|gb|EDM82675.1| ribonuclease PH [Limnobacter sp. MED105]
Length = 243
Score = 182 bits (462), Expect = 3e-44, Method: Composition-based stats.
Identities = 122/237 (51%), Positives = 164/237 (69%), Gaps = 2/237 (0%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R GR +R ISL R +K+AEGS +V+FGDTH+L T ++E+KVP +++ GW+TA
Sbjct: 7 RPDGRNPRALRNISLERNYTKHAEGSVMVRFGDTHVLCTCSVEDKVPGFLKGKNQGWLTA 66
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
EYGMLPRST +R+ REA G+Q GR+QEIQR+IGRALR+ VDL+ LG R + IDCDVIQA
Sbjct: 67 EYGMLPRSTHSRMDREAARGKQSGRTQEIQRLIGRALRAAVDLNKLGERTLKIDCDVIQA 126
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
DGGTRTA+ITGA VA+ D + + +K VAA+S G++ G ++DL+Y E
Sbjct: 127 DGGTRTASITGAMVAVADAIGKLIAN--GALPENPIKQFVAAVSVGVVNGQVVLDLNYDE 184
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
DST + D N VMT+ G VEVQG+AE FS++ ML+ A I +L++LQK +
Sbjct: 185 DSTCETDLNVVMTEKGGFVEVQGTAEGDAFSREELNGMLDSAAAGIIELVRLQKAAL 241
>gi|148251804|ref|YP_001236389.1| ribonuclease PH [Bradyrhizobium sp. BTAi1]
gi|166228266|sp|A5E8I9|RNPH_BRASB RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|146403977|gb|ABQ32483.1| RNAse PH [Bradyrhizobium sp. BTAi1]
Length = 237
Score = 182 bits (462), Expect = 3e-44, Method: Composition-based stats.
Identities = 135/239 (56%), Positives = 179/239 (74%), Gaps = 2/239 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR S R +++R +SL R V KYAEGSCLVKFGDTH+L TATLE+++P W++ GWIT
Sbjct: 1 MRPSRRAPDELRPVSLERGVVKYAEGSCLVKFGDTHVLVTATLEDRLPPWLKGQGRGWIT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPR+T R +REA +G+Q GR+ EIQR+IGR+LR+ +DL ALG RQI +DCDV+Q
Sbjct: 61 AEYGMLPRATLERTRREASAGKQTGRTVEIQRLIGRSLRTAIDLEALGERQITVDCDVLQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+ITGAWVAL DC++ M+ + + +VAAISCG+ G P++DLDY
Sbjct: 121 ADGGTRTASITGAWVALADCIKWMKTRNMLKTEVL--RANVAAISCGIYNGTPVLDLDYA 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
EDS + DANFVMT G I+EVQG+AE+ F++ F A++ LA+ +A L+ LQK ++
Sbjct: 179 EDSEAETDANFVMTGDGRIIEVQGTAEKTPFTEAEFLALMALARKGVARLVDLQKMAVA 237
>gi|328541647|ref|YP_004301756.1| ribonuclease PH [polymorphum gilvum SL003B-26A1]
gi|326411399|gb|ADZ68462.1| Ribonuclease PH [Polymorphum gilvum SL003B-26A1]
Length = 237
Score = 182 bits (462), Expect = 3e-44, Method: Composition-based stats.
Identities = 144/235 (61%), Positives = 181/235 (77%), Gaps = 2/235 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR S R +++R ++L R VSK+AEGSCLVKFGDTH+L TA+LEE+VP W+R + GW+T
Sbjct: 1 MRPSKRDADELRAVTLERGVSKHAEGSCLVKFGDTHVLCTASLEERVPPWLRGQQRGWVT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPR+TG R++REA G+Q GR+QEIQR+IGR+LR+VVDL ALG QI +DCDVIQ
Sbjct: 61 AEYGMLPRATGERMRREASVGKQSGRTQEIQRLIGRSLRAVVDLEALGEYQISVDCDVIQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+ITGAWVAL DC++ M + K HVAAISCG+ G P++DLDY
Sbjct: 121 ADGGTRTASITGAWVALRDCIEWMRARDMVTKPVL--KDHVAAISCGIYKGTPVLDLDYV 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
EDS + DANFV+T +G IVE+QG+AE A F++D F A+L LAK I L+ LQK
Sbjct: 179 EDSAAETDANFVLTGTGGIVEIQGTAEGAPFTEDEFAALLGLAKKGIGRLVDLQK 233
>gi|241202761|ref|YP_002973857.1| ribonuclease PH [Rhizobium leguminosarum bv. trifolii WSM1325]
gi|240856651|gb|ACS54318.1| ribonuclease PH [Rhizobium leguminosarum bv. trifolii WSM1325]
Length = 239
Score = 182 bits (462), Expect = 3e-44, Method: Composition-based stats.
Identities = 149/239 (62%), Positives = 192/239 (80%), Gaps = 1/239 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR SGR+ +QMR++S R SK+AEGSCLVKFGDTH+L TA+LEEK P W+RNT GW+T
Sbjct: 1 MRPSGRKIDQMRKVSFERNFSKHAEGSCLVKFGDTHVLCTASLEEKTPPWLRNTGKGWVT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPR+TG R+KREA +G+QGGR+QEIQR+IGR+LR+VVDL ALG RQI +DCDVIQ
Sbjct: 61 AEYGMLPRATGERMKREAAAGKQGGRTQEIQRLIGRSLRAVVDLQALGERQITLDCDVIQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+ITG W+AL+DCL+ ME + ++ +VLK HVAAISCG+ P++DLDY
Sbjct: 121 ADGGTRTASITGGWIALYDCLKWMESRNM-IKVERVLKDHVAAISCGIFASQPVIDLDYI 179
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
EDS+ + DANFVMT +G IVE+QG+AE FS+ F +++ LA++ I +L+ LQK +
Sbjct: 180 EDSSAETDANFVMTGTGGIVEIQGTAEGTPFSEGEFTSLMQLARNGIGELVALQKQAVE 238
>gi|254228598|ref|ZP_04922023.1| ribonuclease PH [Vibrio sp. Ex25]
gi|151938980|gb|EDN57813.1| ribonuclease PH [Vibrio sp. Ex25]
Length = 240
Score = 182 bits (462), Expect = 3e-44, Method: Composition-based stats.
Identities = 123/240 (51%), Positives = 168/240 (70%), Gaps = 2/240 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR + R+ +Q+R I +TR + YAEGS LV+FG+T +L AT+EE VP W++ GW+T
Sbjct: 3 MRPNDRKADQVRPIKITRNYTAYAEGSVLVEFGNTKVLCNATVEESVPRWLKGQGKGWVT 62
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPR+T +R +REA SG+QGGR+ EIQR+I R+LR+VVDL A+G I +DCDVIQ
Sbjct: 63 AEYGMLPRATHSRTRREAASGKQGGRTMEIQRLIARSLRAVVDLKAMGEFMITVDCDVIQ 122
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+I+GA VA+ D QH+ D + +KGHVAA+S G+L + DL+Y
Sbjct: 123 ADGGTRTASISGASVAMADAFQHLVDS--GKLKANPMKGHVAAVSVGLLGDDVLCDLEYV 180
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
EDS D D N VMT+ G ++E+QG+AE FS + A+L AK I +++ QK ++N
Sbjct: 181 EDSAADTDMNVVMTEEGKMIEIQGTAEGEPFSHEQLMALLESAKIGITEIVAAQKAALAN 240
>gi|269965906|ref|ZP_06179999.1| ribonuclease PH [Vibrio alginolyticus 40B]
gi|269829459|gb|EEZ83700.1| ribonuclease PH [Vibrio alginolyticus 40B]
Length = 240
Score = 182 bits (462), Expect = 3e-44, Method: Composition-based stats.
Identities = 123/240 (51%), Positives = 168/240 (70%), Gaps = 2/240 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR + R+ +Q+R I +TR + YAEGS LV+FG+T +L AT+EE VP W++ GW+T
Sbjct: 3 MRPNDRKADQVRPIKITRNYTAYAEGSVLVEFGNTKVLCNATVEESVPRWLKGQGKGWVT 62
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPR+T +R +REA SG+QGGR+ EIQR+I R+LR+VVDL A+G I +DCDVIQ
Sbjct: 63 AEYGMLPRATHSRTRREAASGKQGGRTMEIQRLIARSLRAVVDLKAMGEFMITVDCDVIQ 122
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+I+GA VA+ D QH+ D + +KGHVAA+S G+L + DL+Y
Sbjct: 123 ADGGTRTASISGASVAMADAFQHLVDS--GKLKANPMKGHVAAVSVGLLGDEVLCDLEYV 180
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
EDS D D N VMT+ G ++E+QG+AE FS + A+L AK I +++ QK ++N
Sbjct: 181 EDSAADTDMNVVMTEEGKMIEIQGTAEGEPFSHEQLMALLESAKVGITEIVAAQKAALAN 240
>gi|307249253|ref|ZP_07531250.1| Ribonuclease PH [Actinobacillus pleuropneumoniae serovar 4 str.
M62]
gi|306858777|gb|EFM90836.1| Ribonuclease PH [Actinobacillus pleuropneumoniae serovar 4 str.
M62]
Length = 238
Score = 182 bits (462), Expect = 3e-44, Method: Composition-based stats.
Identities = 123/239 (51%), Positives = 165/239 (69%), Gaps = 2/239 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR + R+ NQ+R + +TR ++YAEGS LV+FG+T +L AT+EE VP +++ + GW+T
Sbjct: 1 MRPNNRELNQVRPVKITRHYTRYAEGSVLVEFGETKVLCNATVEETVPRFLKGQQQGWVT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPRST +R++REA G+QGGR+ EIQR+I R+LR+VVDL ALG R I +DCDVIQ
Sbjct: 61 AEYGMLPRSTHSRMQREAAKGKQGGRTMEIQRLIARSLRAVVDLKALGERTITVDCDVIQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTAAITGA VALHD + + +KG VAAIS G++ G + DL+Y
Sbjct: 121 ADGGTRTAAITGACVALHDAMSKLVAD--GVLKENPMKGLVAAISVGIVNGNAVCDLEYV 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
EDS + D N VM + G +VEVQG+AE FS +L+LA I L+ Q+ ++
Sbjct: 179 EDSNAETDMNVVMVEDGRLVEVQGTAEGEPFSHMELLQLLDLAHQGINQLLDAQRKALA 237
>gi|125972712|ref|YP_001036622.1| ribonuclease PH [Clostridium thermocellum ATCC 27405]
gi|125712937|gb|ABN51429.1| RNAse PH [Clostridium thermocellum ATCC 27405]
Length = 263
Score = 182 bits (462), Expect = 3e-44, Method: Composition-based stats.
Identities = 112/240 (46%), Positives = 161/240 (67%), Gaps = 2/240 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+R+ GR ++ +R + +TR K+AEGS L++ GDT ++ TAT+++KVP + +NT GW+T
Sbjct: 2 LRIDGRGQSDLRPVKITRNYIKHAEGSVLIEMGDTKVICTATVDDKVPPFKKNTGEGWVT 61
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEY MLPR+T R R+ + GRSQEIQR+IGRALRSVV+L+ LG R+IIIDCDVIQ
Sbjct: 62 AEYSMLPRATAARNPRDISKLKLSGRSQEIQRLIGRALRSVVNLNLLGEREIIIDCDVIQ 121
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+ITG +VAL D + + D + +AA+S G++ G ++DL Y
Sbjct: 122 ADGGTRTASITGGFVALVDACKKLVDD--GIIEKIPVTDFLAAVSVGIVDGEEMLDLCYM 179
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
EDS D N VMT G +E+Q + E+ F ++ F +L+ A+ I+ LI++QKD +
Sbjct: 180 EDSNAATDMNVVMTSKGEFIEIQATGEQLPFKKEQFDKLLSFAEKGISQLIEIQKDALGQ 239
>gi|293611262|ref|ZP_06693560.1| ribonuclease PH [Acinetobacter sp. SH024]
gi|292826513|gb|EFF84880.1| ribonuclease PH [Acinetobacter sp. SH024]
gi|325124022|gb|ADY83545.1| ribonuclease PH (RNase PH), tRNA nucleotidyltransferase
[Acinetobacter calcoaceticus PHEA-2]
Length = 238
Score = 182 bits (462), Expect = 3e-44, Method: Composition-based stats.
Identities = 123/239 (51%), Positives = 162/239 (67%), Gaps = 2/239 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR+ R +Q+RE+ +TR ++YAEGS LV+FG T +L TA+++ VP +++ GW+T
Sbjct: 1 MRIDQRALDQLREVKITRNYTRYAEGSVLVEFGHTKVLCTASIDNSVPRFLKGQGQGWVT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPRST +R REA G+Q GR+QEIQR+IGR+LR++VDL LG I IDCDVIQ
Sbjct: 61 AEYGMLPRSTHSRCDREAARGKQTGRTQEIQRLIGRSLRAMVDLKKLGENTITIDCDVIQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+ITGA VAL D + S K LKG VAAIS GM ++DL Y
Sbjct: 121 ADGGTRTASITGAAVALVDAMN--VLLSQKKIKHDPLKGLVAAISVGMYQDEVLLDLCYE 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
EDS D N VMT +G +E+QG+AE F++ AML +A+ IA+LIK Q++ +
Sbjct: 179 EDSNCQTDLNVVMTQAGEFIEIQGTAEDKPFTRAQSNAMLEMAEKGIAELIKKQQEALG 237
>gi|291485267|dbj|BAI86342.1| ribonuclease PH [Bacillus subtilis subsp. natto BEST195]
Length = 245
Score = 182 bits (462), Expect = 3e-44, Method: Composition-based stats.
Identities = 106/242 (43%), Positives = 152/242 (62%), Gaps = 1/242 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR GRQ +++R I+ + EGS L+ G+T ++ A++E++VP ++R GWIT
Sbjct: 1 MRHDGRQHDELRPITFDLDFISHPEGSVLITAGNTKVICNASVEDRVPPFLRGGGKGWIT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEY MLPR+T R RE+ G+ GR+ EIQR+IGRALR+VVDL LG R I IDCDVIQ
Sbjct: 61 AEYSMLPRATNQRTIRESSKGKISGRTMEIQRLIGRALRAVVDLEKLGERTIWIDCDVIQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+ITGA++A+ + + ++ G ++DL+Y
Sbjct: 121 ADGGTRTASITGAFLAMAIAIGKLIKAGTIKTSPITDFLAAISVGIDKEQG-ILLDLNYE 179
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
EDS+ +VD N +MT SG VE+QG+ E ATFS++ +L LA+ I +LI QK+V+ +
Sbjct: 180 EDSSAEVDMNVIMTGSGRFVELQGTGEEATFSREDLNGLLGLAEKGIQELIDKQKEVLGD 239
Query: 241 EV 242
+
Sbjct: 240 SL 241
>gi|16079889|ref|NP_390715.1| ribonuclease PH [Bacillus subtilis subsp. subtilis str. 168]
gi|221310778|ref|ZP_03592625.1| ribonuclease PH [Bacillus subtilis subsp. subtilis str. 168]
gi|221315103|ref|ZP_03596908.1| ribonuclease PH [Bacillus subtilis subsp. subtilis str. NCIB 3610]
gi|221320021|ref|ZP_03601315.1| ribonuclease PH [Bacillus subtilis subsp. subtilis str. JH642]
gi|221324304|ref|ZP_03605598.1| ribonuclease PH [Bacillus subtilis subsp. subtilis str. SMY]
gi|321312370|ref|YP_004204657.1| ribonuclease PH [Bacillus subtilis BSn5]
gi|133188|sp|P28619|RNPH_BACSU RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|47168514|pdb|1OYP|A Chain A, Crystal Structure Of The Phosphorolytic Exoribonuclease
Rnase Ph From Bacillus Subtilis
gi|47168515|pdb|1OYP|B Chain B, Crystal Structure Of The Phosphorolytic Exoribonuclease
Rnase Ph From Bacillus Subtilis
gi|47168516|pdb|1OYP|C Chain C, Crystal Structure Of The Phosphorolytic Exoribonuclease
Rnase Ph From Bacillus Subtilis
gi|47168517|pdb|1OYP|D Chain D, Crystal Structure Of The Phosphorolytic Exoribonuclease
Rnase Ph From Bacillus Subtilis
gi|47168518|pdb|1OYP|E Chain E, Crystal Structure Of The Phosphorolytic Exoribonuclease
Rnase Ph From Bacillus Subtilis
gi|47168519|pdb|1OYP|F Chain F, Crystal Structure Of The Phosphorolytic Exoribonuclease
Rnase Ph From Bacillus Subtilis
gi|47168520|pdb|1OYR|A Chain A, Crystal Structure Of The Phosphorolytic Exoribonuclease
Rnase Ph From Bacillus Subtilis
gi|47168521|pdb|1OYR|B Chain B, Crystal Structure Of The Phosphorolytic Exoribonuclease
Rnase Ph From Bacillus Subtilis
gi|47168522|pdb|1OYR|C Chain C, Crystal Structure Of The Phosphorolytic Exoribonuclease
Rnase Ph From Bacillus Subtilis
gi|47168523|pdb|1OYR|D Chain D, Crystal Structure Of The Phosphorolytic Exoribonuclease
Rnase Ph From Bacillus Subtilis
gi|47168524|pdb|1OYR|E Chain E, Crystal Structure Of The Phosphorolytic Exoribonuclease
Rnase Ph From Bacillus Subtilis
gi|47168525|pdb|1OYR|F Chain F, Crystal Structure Of The Phosphorolytic Exoribonuclease
Rnase Ph From Bacillus Subtilis
gi|143444|gb|AAA22705.1| RNase PH [Bacillus subtilis]
gi|1770059|emb|CAA99554.1| RNase PH [Bacillus subtilis]
gi|2635302|emb|CAB14797.1| ribonuclease PH [Bacillus subtilis subsp. subtilis str. 168]
gi|320018644|gb|ADV93630.1| ribonuclease PH [Bacillus subtilis BSn5]
Length = 245
Score = 182 bits (462), Expect = 3e-44, Method: Composition-based stats.
Identities = 110/243 (45%), Positives = 158/243 (65%), Gaps = 3/243 (1%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR GRQ +++R I+ + EGS L+ G+T ++ A++E++VP ++R GWIT
Sbjct: 1 MRHDGRQHDELRPITFDLDFISHPEGSVLITAGNTKVICNASVEDRVPPFLRGGGKGWIT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEY MLPR+T R RE+ G+ GR+ EIQR+IGRALR+VVDL LG R I IDCDVIQ
Sbjct: 61 AEYSMLPRATNQRTIRESSKGKISGRTMEIQRLIGRALRAVVDLEKLGERTIWIDCDVIQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY-PIVDLDY 179
ADGGTRTA+ITGA++A+ + + + + +AAIS G+ ++DL+Y
Sbjct: 121 ADGGTRTASITGAFLAMAIAIGKLIKA--GTIKTNPITDFLAAISVGIDKEQGILLDLNY 178
Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
EDS+ +VD N +MT SG VE+QG+ E ATFS++ +L LA+ I +LI QK+V+
Sbjct: 179 EEDSSAEVDMNVIMTGSGRFVELQGTGEEATFSREDLNGLLGLAEKGIQELIDKQKEVLG 238
Query: 240 NEV 242
+ +
Sbjct: 239 DSL 241
>gi|161582033|ref|NP_229867.2| ribonuclease PH [Vibrio cholerae O1 biovar El Tor str. N16961]
gi|254851339|ref|ZP_05240689.1| ribonuclease PH [Vibrio cholerae MO10]
gi|255744021|ref|ZP_05417975.1| ribonuclease PH [Vibrio cholera CIRS 101]
gi|262153620|ref|ZP_06028747.1| ribonuclease PH [Vibrio cholerae INDRE 91/1]
gi|21759419|sp|Q9KVD6|RNPH_VIBCH RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|254847044|gb|EET25458.1| ribonuclease PH [Vibrio cholerae MO10]
gi|255738286|gb|EET93677.1| ribonuclease PH [Vibrio cholera CIRS 101]
gi|262030561|gb|EEY49198.1| ribonuclease PH [Vibrio cholerae INDRE 91/1]
gi|327483090|gb|AEA77497.1| Ribonuclease PH [Vibrio cholerae LMA3894-4]
Length = 238
Score = 182 bits (462), Expect = 3e-44, Method: Composition-based stats.
Identities = 121/238 (50%), Positives = 163/238 (68%), Gaps = 2/238 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR R +Q+R I +TR + YAEGS LV+FG+T +L A++EE VP W++ GW+T
Sbjct: 1 MRPDNRAADQVRPIKITRHYTAYAEGSVLVEFGNTKVLCNASIEEGVPRWLKGQGKGWVT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPR+T +R +REA +G+QGGR+ EIQR+I R+LR+VVDL A+G I +DCDVIQ
Sbjct: 61 AEYGMLPRATHSRTRREATNGKQGGRTMEIQRLIARSLRAVVDLEAMGEIMITVDCDVIQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+ITGA VAL D H+ +KGHVAA+S G+L + DL+Y
Sbjct: 121 ADGGTRTASITGASVALADAFAHLIAK--GQLKKNPMKGHVAAVSVGILGEDVLCDLEYV 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
EDS D D N VMT+ G ++E+QG+AE FS + +L +AK IAD++ +QK +
Sbjct: 179 EDSAADTDMNVVMTEEGKMIEIQGTAEGEPFSHEQLLELLAVAKKGIADIVAVQKASL 236
>gi|153835514|ref|ZP_01988181.1| ribonuclease PH [Vibrio harveyi HY01]
gi|148867911|gb|EDL67124.1| ribonuclease PH [Vibrio harveyi HY01]
Length = 238
Score = 182 bits (461), Expect = 4e-44, Method: Composition-based stats.
Identities = 122/240 (50%), Positives = 168/240 (70%), Gaps = 2/240 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR + R+ +Q+R I +TR + YAEGS LV+FG+T +L AT+EE VP W++ GW+T
Sbjct: 1 MRPNDRKADQVRPIKITRNYTAYAEGSVLVEFGNTKVLCNATVEESVPRWLKGQGKGWVT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPR+T +R +REA +G+QGGR+ EIQR+I R+LR+VVDL A+G I +DCDVIQ
Sbjct: 61 AEYGMLPRATHSRTRREAANGKQGGRTMEIQRLIARSLRAVVDLQAMGEFMITVDCDVIQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+I+GA VA+ D QH+ D + +KGHVAA+S G+L + DL+Y
Sbjct: 121 ADGGTRTASISGASVAMADAFQHLVDS--GKLKANPMKGHVAAVSVGLLGDDVLCDLEYV 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
EDS D D N VMT+ G ++E+QG+AE FS + A+L AK I +++ QK ++N
Sbjct: 179 EDSAADTDMNVVMTEEGKMIEIQGTAEGEPFSHEQLMALLESAKVGITEIVAAQKAALAN 238
>gi|170719366|ref|YP_001747054.1| ribonuclease PH [Pseudomonas putida W619]
gi|226736926|sp|B1J4L4|RNPH_PSEPW RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|169757369|gb|ACA70685.1| ribonuclease PH [Pseudomonas putida W619]
Length = 240
Score = 182 bits (461), Expect = 4e-44, Method: Composition-based stats.
Identities = 120/239 (50%), Positives = 166/239 (69%), Gaps = 1/239 (0%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R SGR +Q+R I +TR +K+AEGS LV+FGDT ++ T ++E VP +++ GW+TA
Sbjct: 3 RPSGRAADQLRSIRITRNYTKHAEGSVLVEFGDTKVICTVSVENGVPRFLKGQGQGWLTA 62
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
EYGMLPRSTG R +REA G+QGGR+ EIQR+IGR+LR+ +D+S LG + +DCDVIQA
Sbjct: 63 EYGMLPRSTGERNQREASRGKQGGRTLEIQRLIGRSLRAALDMSKLGDITLYVDCDVIQA 122
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
DGGTRTA+ITGA VAL D L ++ + LK +AA+S GM G ++DLDY E
Sbjct: 123 DGGTRTASITGAMVALVDALAVIKKRG-GLKAGNPLKHMIAAVSVGMYQGEAVLDLDYLE 181
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
DS + D N VMT +G +EVQG+AE A F + F AML LA+ + ++ +LQ+ +++
Sbjct: 182 DSAAETDLNVVMTSAGGFIEVQGTAEGAPFQPEDFNAMLALAQKGMNEIFELQQVALAD 240
>gi|13473880|ref|NP_105448.1| ribonuclease PH [Mesorhizobium loti MAFF303099]
gi|21759410|sp|Q98DN6|RNPH_RHILO RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|14024631|dbj|BAB51234.1| ribonuclease PH [Mesorhizobium loti MAFF303099]
Length = 238
Score = 182 bits (461), Expect = 4e-44, Method: Composition-based stats.
Identities = 151/239 (63%), Positives = 184/239 (76%), Gaps = 1/239 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR S RQ ++MR IS R VSK+AEGSCLVKFGDTH+L TA+LEEKVP W+RN+ GW+T
Sbjct: 1 MRPSKRQFDEMRAISFERGVSKHAEGSCLVKFGDTHVLCTASLEEKVPGWMRNSGKGWVT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPRSTG R++REA +G+QGGR+ EIQR+IGR+LR+VVDL ALG +QI +DCDVIQ
Sbjct: 61 AEYGMLPRSTGERMRREASAGKQGGRTLEIQRLIGRSLRAVVDLQALGEQQITVDCDVIQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+ITG WVAL+DCL+ ME VLK HVAAISCG+ G P++DLDY
Sbjct: 121 ADGGTRTASITGGWVALYDCLRWMEARQMASVSK-VLKDHVAAISCGIHDGQPVIDLDYL 179
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
EDS DANFVMT G IVE+QG+AE FS+D F ++ LAK I L+ LQ+ ++
Sbjct: 180 EDSAAGTDANFVMTGKGGIVEIQGTAEGEPFSEDQFAELMGLAKKGIQRLVSLQQMAVA 238
>gi|50083344|ref|YP_044854.1| ribonuclease PH [Acinetobacter sp. ADP1]
gi|49529320|emb|CAG67032.1| ribonuclease PH (RNase PH), tRNA nucleotidyltransferase
[Acinetobacter sp. ADP1]
Length = 251
Score = 182 bits (461), Expect = 4e-44, Method: Composition-based stats.
Identities = 121/239 (50%), Positives = 158/239 (66%), Gaps = 2/239 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MRL R +Q+R++ +TR ++YAEGS LV+FG T +L TA+++ VP +++ GW+T
Sbjct: 14 MRLDQRALDQLRDVKITRNYTRYAEGSVLVEFGHTKVLCTASIDNSVPRFLKGQGQGWVT 73
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPRST R REA G+Q GR+QEIQR+IGR+LR++VDL LG I IDCDVIQ
Sbjct: 74 AEYGMLPRSTHTRSDREAARGKQTGRTQEIQRLIGRSLRAMVDLKKLGENTITIDCDVIQ 133
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTAAITGA VAL D + K LKG VAAIS G+ ++DL Y
Sbjct: 134 ADGGTRTAAITGAAVALIDAMN--VLLEKKKIKQDPLKGLVAAISVGIYQDEVLLDLCYE 191
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
EDS D N VMT +G +E+QG+AE F++ AML +A+ I +LIK Q+ +
Sbjct: 192 EDSNCQTDLNVVMTQAGEFIEIQGTAEEKPFTRTQANAMLEVAEKGIQELIKKQQQALG 250
>gi|113971932|ref|YP_735725.1| ribonuclease PH [Shewanella sp. MR-4]
gi|114045862|ref|YP_736412.1| ribonuclease PH [Shewanella sp. MR-7]
gi|117922209|ref|YP_871401.1| ribonuclease PH [Shewanella sp. ANA-3]
gi|123131815|sp|Q0HZV0|RNPH_SHESR RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|123324577|sp|Q0HE49|RNPH_SHESM RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|166228320|sp|A0L1S6|RNPH_SHESA RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|113886616|gb|ABI40668.1| RNAse PH [Shewanella sp. MR-4]
gi|113887304|gb|ABI41355.1| RNAse PH [Shewanella sp. MR-7]
gi|117614541|gb|ABK49995.1| RNAse PH [Shewanella sp. ANA-3]
Length = 237
Score = 182 bits (461), Expect = 4e-44, Method: Composition-based stats.
Identities = 122/239 (51%), Positives = 163/239 (68%), Gaps = 2/239 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR S R Q R I++TR+ + +AEGS LV+FG+T +L TA+ E VP +++ GW+T
Sbjct: 1 MRPSNRTPAQTRPITITRQFTAHAEGSVLVEFGETKVLCTASFTEGVPRFLKGQGQGWVT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPRST +R+ REA G+Q GR+QEIQR+IGRALR+ VD+ ALG I+IDCDVIQ
Sbjct: 61 AEYGMLPRSTHSRMDREAARGKQSGRTQEIQRLIGRALRACVDMKALGENTIVIDCDVIQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+ITGA VAL D L S LK +AA+S G+ G I DL+Y
Sbjct: 121 ADGGTRTASITGACVALVDALNW--ARGKGIIKSNPLKFLIAAVSVGIYNGEAISDLEYV 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
EDS + D N VMT++G I+E+QG+AE FS + +L LAK+ I +++ +QK ++
Sbjct: 179 EDSAAETDMNVVMTETGKIIEIQGTAEGEPFSHEELIELLGLAKNSIREIVDVQKAALN 237
>gi|254252975|ref|ZP_04946293.1| RNase PH [Burkholderia dolosa AUO158]
gi|124895584|gb|EAY69464.1| RNase PH [Burkholderia dolosa AUO158]
Length = 246
Score = 182 bits (461), Expect = 4e-44, Method: Composition-based stats.
Identities = 131/242 (54%), Positives = 174/242 (71%), Gaps = 3/242 (1%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R SGR+ +++R+++LTR +K+AEGS LV+FGDT ++ TA++ E+VP ++R+ GW+TA
Sbjct: 7 RPSGRRADELRKVALTRHYTKHAEGSVLVEFGDTKVICTASVAERVPDFLRDRGQGWLTA 66
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
EYGMLPR+T R REA G+Q GR+QEIQR+IGRALR+V DL ALG R I IDCDV QA
Sbjct: 67 EYGMLPRATHTRSDREAARGKQTGRTQEIQRLIGRALRAVFDLEALGPRTIHIDCDVTQA 126
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
DGGTRTA+ITGA+VA HD + + + + HVAAIS G+ G P++DLDY E
Sbjct: 127 DGGTRTASITGAFVAAHDAVSTLIAAGKLVRS--PITDHVAAISVGVYEGVPVLDLDYAE 184
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI-SN 240
DS D D N VMT +G VEVQG+AE A FS+ A+L+LA+ I L++LQKDV+ +
Sbjct: 185 DSRCDTDMNVVMTGAGGFVEVQGTAEGAPFSRAEMNALLDLAQSGIGRLVQLQKDVLGAG 244
Query: 241 EV 242
V
Sbjct: 245 HV 246
>gi|254559085|ref|YP_003066180.1| ribonuclease PH [Methylobacterium extorquens DM4]
gi|254266363|emb|CAX22127.1| Ribonuclease PH (RNase PH) (tRNA nucleotidyltransferase)
[Methylobacterium extorquens DM4]
Length = 237
Score = 182 bits (461), Expect = 4e-44, Method: Composition-based stats.
Identities = 137/239 (57%), Positives = 174/239 (72%), Gaps = 2/239 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR S R + MR+++L R V++YAEGSCLV FG+T +L TA+LEE+ P W+R + GW+T
Sbjct: 1 MRPSKRAADAMRDVTLERAVARYAEGSCLVTFGNTRVLCTASLEERGPPWLRGSGKGWVT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEY MLPR+T R +RE SG+ GR+QEIQR+IGR+LR+V +L ALG RQI +DCDVIQ
Sbjct: 61 AEYAMLPRATHERTRREVNSGKPSGRTQEIQRLIGRSLRAVTNLPALGERQITVDCDVIQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+ITGAWVALHDC M S LK HVAA+SCG+ G P++DLDY
Sbjct: 121 ADGGTRTASITGAWVALHDCFAWMRARS--IISVDPLKDHVAAVSCGIYKGQPVLDLDYA 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
EDS D DANFV+T G IVEVQG+AE F+ + F +L LAK +A L++LQ+ I+
Sbjct: 179 EDSAADTDANFVVTGKGGIVEVQGTAEMEPFTDEQFLELLRLAKGGVAGLVELQRKAIA 237
>gi|77361698|ref|YP_341273.1| RNase PH (tRNA nucleotidyltransferase) [Pseudoalteromonas
haloplanktis TAC125]
gi|123588968|sp|Q3IJI0|RNPH_PSEHT RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|76876609|emb|CAI87831.1| RNase PH (tRNA nucleotidyltransferase) [Pseudoalteromonas
haloplanktis TAC125]
Length = 237
Score = 182 bits (461), Expect = 4e-44, Method: Composition-based stats.
Identities = 124/239 (51%), Positives = 160/239 (66%), Gaps = 2/239 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR S R NQ+R ++ TR + +AEGS LV+FG+T +L TAT+E VP +++ GWI
Sbjct: 1 MRPSERTANQIRPVTFTRNYTLHAEGSVLVEFGNTKVLCTATVESGVPRFMKGQGKGWIN 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPR+T R REA G+QGGR+ EIQR+I RALR+ VDL ALG I IDCDVIQ
Sbjct: 61 AEYGMLPRATHTRNAREAARGKQGGRTMEIQRLIARALRAAVDLKALGENTITIDCDVIQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+I+GA VAL D L HM S LK +AAIS G+ G I DL+Y
Sbjct: 121 ADGGTRTASISGACVALVDALTHMRAK--GMINSNPLKYMIAAISVGIYKGQAISDLEYI 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
EDS + D N ++T++G I+E+QG+AE FS D +L LAK I ++I +QK ++
Sbjct: 179 EDSAAETDMNVILTETGKIIEIQGTAEGEPFSFDELDELLTLAKHSIREIIDVQKQALA 237
>gi|241663552|ref|YP_002981912.1| ribonuclease PH [Ralstonia pickettii 12D]
gi|240865579|gb|ACS63240.1| ribonuclease PH [Ralstonia pickettii 12D]
Length = 238
Score = 182 bits (461), Expect = 4e-44, Method: Composition-based stats.
Identities = 127/239 (53%), Positives = 164/239 (68%), Gaps = 2/239 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR SGRQ +Q+R ++LTR +++AEGS LV FGDT +L TA++ KVP + + GW+T
Sbjct: 1 MRPSGRQPDQLRPVTLTRNFTRHAEGSVLVCFGDTQVLCTASVLPKVPPHKKGSGEGWVT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPRST R REA G+Q GR+QEIQR+IGRA+RSV DL ALG + +DCDV+Q
Sbjct: 61 AEYGMLPRSTHTRSDREAARGKQTGRTQEIQRLIGRAMRSVFDLRALGEHTLHLDCDVLQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+ITGA+VA +D + M + + ++ VAA+S G++ G P++DLDY
Sbjct: 121 ADGGTRTASITGAFVAAYDAVSVMREK--GQLVGNPIRDFVAAVSVGVVDGVPVLDLDYP 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
EDS D D N VMT SG VEVQG+AE FS+ A+L LA I LI LQK +
Sbjct: 179 EDSACDTDMNVVMTGSGGFVEVQGTAEGTPFSRAEMDALLGLADQGIRTLIGLQKQALG 237
>gi|61215919|sp|Q6FFX5|RNPH_ACIAD RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
Length = 238
Score = 182 bits (461), Expect = 4e-44, Method: Composition-based stats.
Identities = 121/239 (50%), Positives = 158/239 (66%), Gaps = 2/239 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MRL R +Q+R++ +TR ++YAEGS LV+FG T +L TA+++ VP +++ GW+T
Sbjct: 1 MRLDQRALDQLRDVKITRNYTRYAEGSVLVEFGHTKVLCTASIDNSVPRFLKGQGQGWVT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPRST R REA G+Q GR+QEIQR+IGR+LR++VDL LG I IDCDVIQ
Sbjct: 61 AEYGMLPRSTHTRSDREAARGKQTGRTQEIQRLIGRSLRAMVDLKKLGENTITIDCDVIQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTAAITGA VAL D + K LKG VAAIS G+ ++DL Y
Sbjct: 121 ADGGTRTAAITGAAVALIDAMN--VLLEKKKIKQDPLKGLVAAISVGIYQDEVLLDLCYE 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
EDS D N VMT +G +E+QG+AE F++ AML +A+ I +LIK Q+ +
Sbjct: 179 EDSNCQTDLNVVMTQAGEFIEIQGTAEEKPFTRTQANAMLEVAEKGIQELIKKQQQALG 237
>gi|258620570|ref|ZP_05715607.1| ribonuclease PH [Vibrio mimicus VM573]
gi|262172697|ref|ZP_06040375.1| ribonuclease PH [Vibrio mimicus MB-451]
gi|258587085|gb|EEW11797.1| ribonuclease PH [Vibrio mimicus VM573]
gi|261893773|gb|EEY39759.1| ribonuclease PH [Vibrio mimicus MB-451]
Length = 238
Score = 182 bits (461), Expect = 4e-44, Method: Composition-based stats.
Identities = 120/238 (50%), Positives = 162/238 (68%), Gaps = 2/238 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR R +Q+R I +TR + YAEGS LV+FG+T +L A++EE VP W++ GW+T
Sbjct: 1 MRPDNRAADQVRPIKITRNYTAYAEGSVLVEFGNTKVLCNASIEEGVPRWLKGQGKGWVT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPR+T +R +REA +G+QGGR+ EIQR+I R+LR+VVDL A+ I +DCDVIQ
Sbjct: 61 AEYGMLPRATHSRTRREATNGKQGGRTMEIQRLIARSLRAVVDLEAMSEIMITVDCDVIQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+ITGA VAL D H+ +KGHVAA+S G+L + DL+Y
Sbjct: 121 ADGGTRTASITGASVALADAFAHLMAK--GQLKKNPMKGHVAAVSVGILGEDVLCDLEYV 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
EDS D D N VMT+ G ++E+QG+AE FS + +L +AK IAD++ +QK +
Sbjct: 179 EDSAADTDMNVVMTEEGKMIEIQGTAEGEPFSHEQLLELLAVAKKGIADIVAVQKASL 236
>gi|153837893|ref|ZP_01990560.1| ribonuclease PH [Vibrio parahaemolyticus AQ3810]
gi|260902523|ref|ZP_05910918.1| tRNA nucleotidyltransferase [Vibrio parahaemolyticus AQ4037]
gi|149748756|gb|EDM59601.1| ribonuclease PH [Vibrio parahaemolyticus AQ3810]
gi|308109638|gb|EFO47178.1| tRNA nucleotidyltransferase [Vibrio parahaemolyticus AQ4037]
Length = 238
Score = 182 bits (461), Expect = 4e-44, Method: Composition-based stats.
Identities = 122/240 (50%), Positives = 168/240 (70%), Gaps = 2/240 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR + R+ +Q+R I +TR + YAEGS LV+FG+T +L AT+EE VP W++ GW+T
Sbjct: 1 MRPNDRKADQVRPIKITRNYTAYAEGSVLVEFGNTKVLCNATVEESVPRWLKGQGKGWVT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPR+T +R +REA +G+QGGR+ EIQR+I R+LR+VVDL A+G I +DCDVIQ
Sbjct: 61 AEYGMLPRATHSRTRREAANGKQGGRTMEIQRLIARSLRAVVDLQAMGEFMITVDCDVIQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+I+GA VA+ D QH+ D + +KGHVAA+S G+L + DL+Y
Sbjct: 121 ADGGTRTASISGASVAMADAFQHLVDS--GKLKANPMKGHVAAVSVGLLGDEVLCDLEYV 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
EDS D D N VMT+ G ++E+QG+AE FS + A+L AK I +++ QK ++N
Sbjct: 179 EDSAADTDMNVVMTEEGKMIEIQGTAEGEPFSHEQLMALLESAKVGITEIVAAQKAALAN 238
>gi|152979839|ref|YP_001353022.1| ribonuclease PH [Janthinobacterium sp. Marseille]
gi|151279916|gb|ABR88326.1| ribonuclease PH [Janthinobacterium sp. Marseille]
Length = 244
Score = 182 bits (461), Expect = 4e-44, Method: Composition-based stats.
Identities = 125/238 (52%), Positives = 165/238 (69%), Gaps = 2/238 (0%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R SGR + +R I LTR +K+AEGS L++ GDT ++ TA++E++VP +++ GW+TA
Sbjct: 6 RPSGRAADALRAIKLTRNYTKHAEGSVLIECGDTKVICTASIEDRVPGFLKGKGQGWLTA 65
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
EYGMLPRST R+ REA G+Q GR+QEIQR+IGR+LR+ DL A G R + +DCDVIQA
Sbjct: 66 EYGMLPRSTHTRMDREAARGKQSGRTQEIQRLIGRSLRAAFDLQAFGERTLHLDCDVIQA 125
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
DGGTRTAAITG VA +D + + + LK VAAIS G+ G P++DLDY E
Sbjct: 126 DGGTRTAAITGTMVAAYDAFSKLVAQN--VIPAIPLKHFVAAISVGVYKGQPVLDLDYDE 183
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
DS D D N VMTD+GH +EVQG+AE A F + +L+LA+D I DLI LQK ++
Sbjct: 184 DSDCDTDMNIVMTDAGHFIEVQGTAEGAAFDRATMDKLLDLAQDGIRDLIVLQKQALA 241
>gi|149376205|ref|ZP_01893970.1| tRNA nucleotidyltransferase [Marinobacter algicola DG893]
gi|149359610|gb|EDM48069.1| tRNA nucleotidyltransferase [Marinobacter algicola DG893]
Length = 238
Score = 182 bits (461), Expect = 4e-44, Method: Composition-based stats.
Identities = 131/240 (54%), Positives = 164/240 (68%), Gaps = 2/240 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR SGR Q R+I +TR +++AEGS LV+FGDT ++ TA++E KVP ++R GWIT
Sbjct: 1 MRPSGRTPEQPRDIRITRHYTRHAEGSVLVEFGDTKVICTASVENKVPPFLRGEGKGWIT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPRSTG+R+ REA G+QGGR+ EIQR+IGR+LR+ VDLSALG I IDCDVIQ
Sbjct: 61 AEYGMLPRSTGSRMGREAARGKQGGRTVEIQRLIGRSLRAAVDLSALGEHSITIDCDVIQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTAAITG VAL D L H+ LK +AA S G+ G P++DLDY
Sbjct: 121 ADGGTRTAAITGGCVALVDALNHLVKEGRLKTS--PLKQMIAAFSVGVYKGTPVLDLDYP 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
EDS + D N +MTD G +E+QG+AE A F Q+ ML LAK I L + QK ++
Sbjct: 179 EDSEAETDMNVIMTDQGGFIEIQGTAEGAPFEQEELDGMLKLAKLGIGQLFEAQKAALAQ 238
>gi|261213164|ref|ZP_05927447.1| ribonuclease PH [Vibrio sp. RC341]
gi|260837582|gb|EEX64276.1| ribonuclease PH [Vibrio sp. RC341]
Length = 238
Score = 182 bits (461), Expect = 4e-44, Method: Composition-based stats.
Identities = 121/238 (50%), Positives = 163/238 (68%), Gaps = 2/238 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR R +Q+R I +TR + YAEGS LV+FG+T +L A++EE VP W++ GW+T
Sbjct: 1 MRPDNRAADQVRPIKITRHYTAYAEGSVLVEFGNTKVLCNASIEEGVPRWLKGQGKGWVT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPR+T +R +REA +G+QGGR+ EIQR+I R+LR+VVDL A+G I +DCDVIQ
Sbjct: 61 AEYGMLPRATHSRTRREATNGKQGGRTMEIQRLIARSLRAVVDLEAMGEIMITVDCDVIQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+ITGA VAL D H+ +KGHVAA+S G+L + DL+Y
Sbjct: 121 ADGGTRTASITGASVALADAFAHLMAK--GQLKKNPMKGHVAAVSVGILGEDVLCDLEYV 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
EDS D D N VMT+ G ++E+QG+AE FS + +L +AK IAD++ +QK +
Sbjct: 179 EDSAADTDMNVVMTEEGKMIEIQGTAEGEPFSHEQLLELLAVAKKGIADIVAVQKASL 236
>gi|309812199|ref|ZP_07705957.1| tRNA nucleotidyltransferase [Dermacoccus sp. Ellin185]
gi|308433886|gb|EFP57760.1| tRNA nucleotidyltransferase [Dermacoccus sp. Ellin185]
Length = 255
Score = 182 bits (461), Expect = 4e-44, Method: Composition-based stats.
Identities = 126/240 (52%), Positives = 166/240 (69%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R GR +Q+RE+ +TR +AEGSCLV+FG T +L A+ E VP W++ GW+T+
Sbjct: 10 RHDGRTPDQLREVRITRNWLDHAEGSCLVEFGRTRVLCAASFTEGVPRWLKGQGTGWVTS 69
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
EY MLPRST R REA G+ GGR+ EI R+IGR+LR+V+D ALG I+IDCDV+QA
Sbjct: 70 EYEMLPRSTNTRSDREARKGKVGGRTHEISRLIGRSLRAVIDTKALGENTIVIDCDVLQA 129
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
DGGTRTA+ITGA+VAL D + + + ++ L VAAIS G++ G P++DLDY E
Sbjct: 130 DGGTRTASITGAYVALADAIADAQARGLIAKKAKPLTDSVAAISVGIVAGQPVLDLDYPE 189
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
DST + D N VMT SG IVEVQG+AE A FS+D A+L+LA D IADL Q+D ++ +
Sbjct: 190 DSTAETDMNVVMTGSGGIVEVQGTAEGAPFSRDELNALLDLAADGIADLTTKQRDALAAD 249
>gi|167837502|ref|ZP_02464385.1| ribonuclease PH [Burkholderia thailandensis MSMB43]
Length = 243
Score = 182 bits (461), Expect = 4e-44, Method: Composition-based stats.
Identities = 125/238 (52%), Positives = 170/238 (71%), Gaps = 2/238 (0%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R SGR+ +Q+R++ +TR +K+AEGS LV+FGDT ++ TA++ E+VP ++R GW+TA
Sbjct: 7 RPSGRRADQLRDVRITRHYTKHAEGSVLVEFGDTKVICTASVAERVPEFLRERGQGWLTA 66
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
EYGMLPR+T R REA G+Q GR+QEIQR+IGRALR+V DL+ALG R + +DCDVIQA
Sbjct: 67 EYGMLPRATHTRSDREAARGKQTGRTQEIQRLIGRALRAVFDLNALGPRTLHLDCDVIQA 126
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
DGGTRTA+ITGA+VA HD + + + +VAAIS G+ G P++DLDY E
Sbjct: 127 DGGTRTASITGAFVAAHDAVTQLVAA--GKIARSPITDYVAAISVGVFGGAPVLDLDYDE 184
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
DS D D N VMT +G VEVQG+AE A FS+ A+L+LA+ I +L++LQ+ +
Sbjct: 185 DSACDTDMNIVMTGAGGFVEVQGTAEGAPFSRAEMNALLDLAQAGIGELVRLQRAALE 242
>gi|32035564|ref|ZP_00135495.1| COG0689: RNase PH [Actinobacillus pleuropneumoniae serovar 1 str.
4074]
gi|126207543|ref|YP_001052768.1| ribonuclease PH [Actinobacillus pleuropneumoniae L20]
gi|165975512|ref|YP_001651105.1| ribonuclease PH [Actinobacillus pleuropneumoniae serovar 3 str.
JL03]
gi|303251878|ref|ZP_07338049.1| ribonuclease PH [Actinobacillus pleuropneumoniae serovar 2 str.
4226]
gi|307247031|ref|ZP_07529085.1| Ribonuclease PH [Actinobacillus pleuropneumoniae serovar 2 str.
S1536]
gi|307260507|ref|ZP_07542201.1| Ribonuclease PH [Actinobacillus pleuropneumoniae serovar 12 str.
1096]
gi|166228262|sp|A3MYC7|RNPH_ACTP2 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|226736879|sp|B0BRL3|RNPH_ACTPJ RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|126096335|gb|ABN73163.1| ribonuclease PH [Actinobacillus pleuropneumoniae serovar 5b str.
L20]
gi|165875613|gb|ABY68661.1| ribonuclease PH [Actinobacillus pleuropneumoniae serovar 3 str.
JL03]
gi|302649308|gb|EFL79493.1| ribonuclease PH [Actinobacillus pleuropneumoniae serovar 2 str.
4226]
gi|306856483|gb|EFM88632.1| Ribonuclease PH [Actinobacillus pleuropneumoniae serovar 2 str.
S1536]
gi|306869819|gb|EFN01602.1| Ribonuclease PH [Actinobacillus pleuropneumoniae serovar 12 str.
1096]
Length = 238
Score = 182 bits (461), Expect = 4e-44, Method: Composition-based stats.
Identities = 122/239 (51%), Positives = 165/239 (69%), Gaps = 2/239 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR + R+ NQ+R + +TR ++YAEGS LV+FG+T +L AT+EE VP +++ + GW+T
Sbjct: 1 MRPNNRELNQVRPVKITRHYTRYAEGSVLVEFGETKVLCNATVEETVPRFLKGQQQGWVT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPRST +R++REA G+QGGR+ EIQR+I R+LR+VVDL ALG R + +DCDVIQ
Sbjct: 61 AEYGMLPRSTHSRMQREAAKGKQGGRTMEIQRLIARSLRAVVDLKALGERTVTVDCDVIQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTAAITGA VALHD + + +KG VAAIS G++ G + DL+Y
Sbjct: 121 ADGGTRTAAITGACVALHDAMSKLVAD--GVLKENPMKGLVAAISVGIVDGNAVCDLEYV 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
EDS + D N VM + G +VEVQG+AE FS +L+LA I L+ Q+ ++
Sbjct: 179 EDSNAETDMNVVMVEDGRLVEVQGTAEGEPFSHMELLQLLDLAHQGINQLLDAQRKALA 237
>gi|183597211|ref|ZP_02958704.1| hypothetical protein PROSTU_00454 [Providencia stuartii ATCC 25827]
gi|188023525|gb|EDU61565.1| hypothetical protein PROSTU_00454 [Providencia stuartii ATCC 25827]
Length = 237
Score = 182 bits (461), Expect = 4e-44, Method: Composition-based stats.
Identities = 119/239 (49%), Positives = 160/239 (66%), Gaps = 2/239 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR GR +QMR I ++R +K+AEGS L++FGDT +L AT+EE VP +++ GW+T
Sbjct: 1 MRPEGRMADQMRPIKISRNYTKHAEGSVLIEFGDTKVLCNATVEEGVPRFLKGQGQGWVT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPR+T +R +REA G+Q GR+ EIQR+I R+LR+ VDL LG I +DCDVIQ
Sbjct: 61 AEYGMLPRATNSRNQREAAKGKQTGRTMEIQRLIARSLRAAVDLKKLGEYTITLDCDVIQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTAAI+GA VAL D L M + Q LK VAA+S G++ G + DL+Y
Sbjct: 121 ADGGTRTAAISGACVALVDALNKMVEQGKLAQS--PLKSMVAAVSVGIVDGEALCDLEYV 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
EDS + D N VM D G ++EVQG+AE FS D ++L LAK + + + Q++ +
Sbjct: 179 EDSAAETDMNVVMMDDGRMIEVQGTAEGEPFSHDELLSLLALAKTGLGSIFEAQREALK 237
>gi|260770721|ref|ZP_05879651.1| ribonuclease PH [Vibrio furnissii CIP 102972]
gi|260614302|gb|EEX39491.1| ribonuclease PH [Vibrio furnissii CIP 102972]
gi|315178484|gb|ADT85398.1| ribonuclease PH [Vibrio furnissii NCTC 11218]
Length = 238
Score = 182 bits (461), Expect = 4e-44, Method: Composition-based stats.
Identities = 120/240 (50%), Positives = 163/240 (67%), Gaps = 2/240 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR + R +Q+R I +TR + YAEGS LV+FG+T +L AT+EE VP W++ GW+T
Sbjct: 1 MRPNNRAADQVRPIQITRHYTAYAEGSVLVEFGNTKVLCNATVEEGVPRWLKGQGKGWVT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPR+T +R +REA +G+QGGR+ EIQR+I R+LR+VVDL A+G I +DCDVIQ
Sbjct: 61 AEYGMLPRATHSRTRREAANGKQGGRTMEIQRLIARSLRAVVDLEAMGELMITVDCDVIQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+I+GA VA+ D + +KGHVAA+S G+L + DL+Y
Sbjct: 121 ADGGTRTASISGASVAMADAFDKLVAD--GKLKKNPMKGHVAAVSVGILGQDVLCDLEYV 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
EDS D D N VMT+ G ++E+QG+AE FS + +L +AK IAD++ QK + N
Sbjct: 179 EDSAADTDMNVVMTEEGKMIEIQGTAEGEPFSHEQLLDLLAVAKKGIADIVSAQKASLEN 238
>gi|305681138|ref|ZP_07403945.1| tRNA nucleotidyltransferase [Corynebacterium matruchotii ATCC
14266]
gi|305659343|gb|EFM48843.1| tRNA nucleotidyltransferase [Corynebacterium matruchotii ATCC
14266]
Length = 242
Score = 182 bits (461), Expect = 5e-44, Method: Composition-based stats.
Identities = 103/239 (43%), Positives = 154/239 (64%), Gaps = 2/239 (0%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R GR +Q+R I +TR + GS L+++G+T ++ TA+ E+ VP + +++ GW+TA
Sbjct: 6 RADGRAPDQLRPIRITRGFTTNPAGSVLIEYGNTRVMCTASAEQGVPRFKKDSGEGWLTA 65
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
EY MLP +T R+ RE++ G+ GR+ EI R++GR+LR+ +DL+ LG I IDCDV+QA
Sbjct: 66 EYAMLPAATHERMPRESMRGKVKGRTHEISRLVGRSLRAAIDLTLLGENTINIDCDVLQA 125
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
DGGTRTA+ITGA++AL D + ++ L +AA+S G++ G+ +DL Y E
Sbjct: 126 DGGTRTASITGAYIALADAIAYLTA--QGVVPGNPLLPPIAAVSVGIIDGHVCLDLPYEE 183
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
DS DVD N +MT G VE+QG+AE TFS+D AML+ A+ +LI+ Q +
Sbjct: 184 DSRADVDLNVIMTQEGKFVEIQGTAEHNTFSRDELNAMLDYAEKGCKELIEAQLASLGK 242
>gi|169632071|ref|YP_001705807.1| ribonuclease PH (RNase PH), tRNA nucleotidyltransferase
[Acinetobacter baumannii SDF]
gi|169797749|ref|YP_001715542.1| ribonuclease PH (RNase PH), tRNA nucleotidyltransferase
[Acinetobacter baumannii AYE]
gi|184156383|ref|YP_001844722.1| ribonuclease PH [Acinetobacter baumannii ACICU]
gi|213155451|ref|YP_002317496.1| ribonuclease PH [Acinetobacter baumannii AB0057]
gi|215485100|ref|YP_002327341.1| ribonuclease PH [Acinetobacter baumannii AB307-0294]
gi|239503769|ref|ZP_04663079.1| ribonuclease PH [Acinetobacter baumannii AB900]
gi|260552994|ref|ZP_05825909.1| ribonuclease PH [Acinetobacter sp. RUH2624]
gi|260557749|ref|ZP_05829963.1| ribonuclease PH [Acinetobacter baumannii ATCC 19606]
gi|301347449|ref|ZP_07228190.1| ribonuclease PH [Acinetobacter baumannii AB056]
gi|301513309|ref|ZP_07238546.1| ribonuclease PH [Acinetobacter baumannii AB058]
gi|301595797|ref|ZP_07240805.1| ribonuclease PH [Acinetobacter baumannii AB059]
gi|332852852|ref|ZP_08434434.1| tRNA nucleotidyltransferase [Acinetobacter baumannii 6013150]
gi|332866699|ref|ZP_08437161.1| tRNA nucleotidyltransferase [Acinetobacter baumannii 6013113]
gi|332873553|ref|ZP_08441502.1| tRNA nucleotidyltransferase [Acinetobacter baumannii 6014059]
gi|226736873|sp|B7H2J6|RNPH_ACIB3 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|226736874|sp|B7IBN8|RNPH_ACIB5 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|226736875|sp|B2I029|RNPH_ACIBC RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|226736876|sp|B0VMP4|RNPH_ACIBS RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|226736877|sp|B0V5W8|RNPH_ACIBY RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|226737251|sp|A3M0U3|RNPH_ACIBT RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|169150676|emb|CAM88586.1| ribonuclease PH (RNase PH), tRNA nucleotidyltransferase
[Acinetobacter baumannii AYE]
gi|169150863|emb|CAO99466.1| ribonuclease PH (RNase PH), tRNA nucleotidyltransferase
[Acinetobacter baumannii]
gi|183207977|gb|ACC55375.1| RNase PH [Acinetobacter baumannii ACICU]
gi|193075957|gb|ABO10537.2| ribonuclease PH [Acinetobacter baumannii ATCC 17978]
gi|213054611|gb|ACJ39513.1| ribonuclease PH [Acinetobacter baumannii AB0057]
gi|213986624|gb|ACJ56923.1| ribonuclease PH [Acinetobacter baumannii AB307-0294]
gi|260405236|gb|EEW98733.1| ribonuclease PH [Acinetobacter sp. RUH2624]
gi|260408922|gb|EEX02226.1| ribonuclease PH [Acinetobacter baumannii ATCC 19606]
gi|322506253|gb|ADX01707.1| RNase PH [Acinetobacter baumannii 1656-2]
gi|323516129|gb|ADX90510.1| ribonuclease PH [Acinetobacter baumannii TCDC-AB0715]
gi|332728966|gb|EGJ60317.1| tRNA nucleotidyltransferase [Acinetobacter baumannii 6013150]
gi|332734468|gb|EGJ65583.1| tRNA nucleotidyltransferase [Acinetobacter baumannii 6013113]
gi|332738250|gb|EGJ69128.1| tRNA nucleotidyltransferase [Acinetobacter baumannii 6014059]
Length = 238
Score = 181 bits (460), Expect = 5e-44, Method: Composition-based stats.
Identities = 122/239 (51%), Positives = 162/239 (67%), Gaps = 2/239 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR+ R +Q+RE+ +TR ++YAEGS LV+FG T +L TA+++ VP +++ GW+T
Sbjct: 1 MRIDQRALDQLREVKITRNYTRYAEGSVLVEFGHTKVLCTASIDNSVPRFLKGQGQGWVT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPRST +R REA G+Q GR+QEIQR+IGR+LR++VDL LG I IDCDVIQ
Sbjct: 61 AEYGMLPRSTHSRCDREAARGKQTGRTQEIQRLIGRSLRAMVDLKKLGENTITIDCDVIQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+ITGA VAL D + + K LKG VAAIS GM ++DL Y
Sbjct: 121 ADGGTRTASITGAAVALVDAMN--VLLAQKKIKQDPLKGLVAAISVGMYQDEVLLDLCYE 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
EDS D N VMT +G +E+QG+AE F++ AML +A+ IA+LIK Q++ +
Sbjct: 179 EDSNCQTDLNVVMTQAGEFIEIQGTAEDKPFTRAQSNAMLEMAEKGIAELIKKQQEALG 237
>gi|114762203|ref|ZP_01441671.1| ribonuclease PH [Pelagibaca bermudensis HTCC2601]
gi|114545227|gb|EAU48230.1| ribonuclease PH [Roseovarius sp. HTCC2601]
Length = 237
Score = 181 bits (460), Expect = 5e-44, Method: Composition-based stats.
Identities = 127/237 (53%), Positives = 171/237 (72%), Gaps = 2/237 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR SGR ++MR +S+ V+K+AEGSCL+K GDTH++ TA+LE +VP +I+ + GW+T
Sbjct: 1 MRPSGRDLSEMRPVSIETGVTKHAEGSCLIKMGDTHVICTASLEPRVPPFIKGSGLGWVT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPRSTG+R++REA +G+QGGR+ EIQR+IGR+LR+ VD ALG RQI +DCDVIQ
Sbjct: 61 AEYGMLPRSTGSRMRREATTGKQGGRTVEIQRLIGRSLRAGVDRVALGERQISVDCDVIQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTR AAITG WVAL + + + + VAA+SCG+ G P++DLDY
Sbjct: 121 ADGGTRCAAITGGWVALRLAVNKLMKAGDVITDPLI--SPVAAVSCGIYAGQPVLDLDYP 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
EDS VD NF++ G ++EVQ SAE ATFS+D +L+LA+ +A L++ QK
Sbjct: 179 EDSEAGVDGNFILRGDGQLIEVQMSAEGATFSRDQMGTLLDLAESGVAQLVEAQKAA 235
>gi|307822918|ref|ZP_07653148.1| ribonuclease PH [Methylobacter tundripaludum SV96]
gi|307735693|gb|EFO06540.1| ribonuclease PH [Methylobacter tundripaludum SV96]
Length = 345
Score = 181 bits (460), Expect = 5e-44, Method: Composition-based stats.
Identities = 122/241 (50%), Positives = 166/241 (68%), Gaps = 2/241 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR SGR +Q+R+I T +K+AEGS LV+FGDT +L TA+++ VP +++ GWIT
Sbjct: 106 MRPSGRNPDQLRDIKFTCGFTKHAEGSVLVEFGDTRVLCTASVDRSVPRFLKGKGEGWIT 165
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPRST +R+ REA +G+QGGR+ EIQR+IGR+LR+ +DL ALG I+IDCDV+Q
Sbjct: 166 AEYGMLPRSTHSRMGREASNGKQGGRTLEIQRLIGRSLRAAIDLKALGEHTIMIDCDVLQ 225
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+ITG +VAL +Q M K + L G +A++S G+ G P++DLDY
Sbjct: 226 ADGGTRTASITGGFVALSLAVQKMLKR--KQIKTNPLHGQIASVSVGIYNGVPVLDLDYA 283
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
EDS + D N VM D+ +EVQG+AE F ++ AML LA I +L++ Q+ I N
Sbjct: 284 EDSNAETDMNVVMNDAAAFIEVQGTAEGHAFRKEELDAMLALAGSGIKELLEKQRFAIEN 343
Query: 241 E 241
Sbjct: 344 H 344
>gi|163742618|ref|ZP_02150004.1| ribonuclease PH [Phaeobacter gallaeciensis 2.10]
gi|161384203|gb|EDQ08586.1| ribonuclease PH [Phaeobacter gallaeciensis 2.10]
Length = 237
Score = 181 bits (460), Expect = 5e-44, Method: Composition-based stats.
Identities = 127/237 (53%), Positives = 167/237 (70%), Gaps = 2/237 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR SGR +QMR +S+ +K+AEGSCL+K GDTH+L TAT+E++VP +I+ + GW+T
Sbjct: 1 MRPSGRNLDQMRAVSIETGFTKHAEGSCLIKMGDTHVLCTATIEDRVPPFIKGSGLGWVT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPR+T R++REA G+QGGR+ EIQR+IGRALR+ VD ALG RQI IDCDV+Q
Sbjct: 61 AEYGMLPRATNTRMRREAAMGKQGGRTVEIQRLIGRALRAGVDRVALGERQISIDCDVLQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTR A+ITG WVAL + + V VAA+SCG+ G P++DLDY
Sbjct: 121 ADGGTRCASITGGWVALRLAVNKLMKTGEVKIDPLV--DPVAAVSCGIYAGQPVLDLDYP 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
EDS VD NF+MT SG ++EVQ SAE + FS++ +++LA A+L +LQK
Sbjct: 179 EDSEAGVDGNFIMTGSGQLIEVQMSAEGSMFSREQMNTLMDLATKGTAELAELQKAA 235
>gi|153956061|ref|YP_001396826.1| ribonuclease PH [Clostridium kluyveri DSM 555]
gi|219856397|ref|YP_002473519.1| hypothetical protein CKR_3054 [Clostridium kluyveri NBRC 12016]
gi|189043757|sp|A5N2V9|RNPH_CLOK5 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|254808584|sp|B9DWL2|RNPH_CLOK1 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|146348919|gb|EDK35455.1| RpH [Clostridium kluyveri DSM 555]
gi|219570121|dbj|BAH08105.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
Length = 248
Score = 181 bits (460), Expect = 5e-44, Method: Composition-based stats.
Identities = 113/239 (47%), Positives = 161/239 (67%), Gaps = 2/239 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR+ GR+ NQ+R + +TR +KYAEGS L++ GDT ++ TA++E+KVP +++ GWIT
Sbjct: 1 MRVDGRKCNQIRPVKITRNYTKYAEGSVLIENGDTKVICTASIEDKVPPFLKGRGEGWIT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
EY M+PR+T R R+ GR GR+ EIQR+IGRALRSVVDL A+G + I +DCDVIQ
Sbjct: 61 CEYNMIPRATQVRKARDINRGRIDGRTMEIQRIIGRALRSVVDLRAIGEKTIWVDCDVIQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+I+GA+VAL D + + + ++ V+A+S G++ ++DL Y
Sbjct: 121 ADGGTRTASISGAFVALVDAVNKLHKQNPFTI--YPIRDFVSAVSVGIVNDTRMLDLCYL 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
EDS VD N VMTDSG VE+QG+ E+ F+++ +L LA+ I +I QKD +
Sbjct: 179 EDSRAKVDMNVVMTDSGEFVEIQGTGEQNPFTREDLKELLALAEKGIKSMISAQKDSLK 237
>gi|118593717|ref|ZP_01551092.1| ribonuclease PH [Stappia aggregata IAM 12614]
gi|118433727|gb|EAV40389.1| ribonuclease PH [Stappia aggregata IAM 12614]
Length = 237
Score = 181 bits (460), Expect = 5e-44, Method: Composition-based stats.
Identities = 144/238 (60%), Positives = 186/238 (78%), Gaps = 2/238 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR S R +++R ++L R VSK+AEGSCLVKFGDTH+L TA+LEE+VP W+R GW+T
Sbjct: 1 MRPSKRAADELRAVTLERGVSKHAEGSCLVKFGDTHVLCTASLEERVPPWLRGQNRGWVT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPR+TG+R++REA +G+Q GR+QEIQR+IGR+LR+VV+L ALG QI +DCDVIQ
Sbjct: 61 AEYGMLPRATGDRMRREASAGKQSGRTQEIQRLIGRSLRAVVNLEALGENQITVDCDVIQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+ITGAWVAL DC++ M+ +VLK H+AAISCG+ G P++DLDY
Sbjct: 121 ADGGTRTASITGAWVALRDCIEWMKARDM--VSGEVLKDHIAAISCGIYEGTPVLDLDYA 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
EDST + DANFV+T +G IVE+QG+AE A FS++ F ++ LAK I L+ LQK I
Sbjct: 179 EDSTAETDANFVLTGAGGIVEIQGTAEGAPFSEEEFGKLMGLAKLGIGKLVDLQKMAI 236
>gi|148653988|ref|YP_001281081.1| ribonuclease PH [Psychrobacter sp. PRwf-1]
gi|172048586|sp|A5WHJ0|RNPH_PSYWF RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|148573072|gb|ABQ95131.1| RNAse PH [Psychrobacter sp. PRwf-1]
Length = 238
Score = 181 bits (460), Expect = 5e-44, Method: Composition-based stats.
Identities = 119/239 (49%), Positives = 164/239 (68%), Gaps = 2/239 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR+ R+ +Q+R ++ R +K+AEGS LV FGDT +L TA++E VP W++ GW+T
Sbjct: 1 MRIDNRELDQLRTVTFERNYTKHAEGSVLVCFGDTKVLCTASVEAGVPRWLKGKGQGWVT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPR+T R +REA G+Q GR+QEIQR+IGR+LR++VDL+ LG I +DCDV+Q
Sbjct: 61 AEYGMLPRATNTRNQREAARGKQSGRTQEIQRLIGRSLRAMVDLTKLGENTIYLDCDVLQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+ITGA +AL D L+ K + L G VAA+S G+ G ++DL+Y
Sbjct: 121 ADGGTRTASITGAAIALIDALE--VLQQKKKLKADPLIGLVAAVSVGVKNGEVLLDLNYE 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
EDS+ D D N VMT G +E+QG+AE F++ ML +A+ IADL+KLQ+ +
Sbjct: 179 EDSSCDTDLNVVMTQKGEFIEIQGTAEEKPFTRAEADKMLAMAEKGIADLVKLQQTALG 237
>gi|260774477|ref|ZP_05883391.1| ribonuclease PH [Vibrio metschnikovii CIP 69.14]
gi|260610604|gb|EEX35809.1| ribonuclease PH [Vibrio metschnikovii CIP 69.14]
Length = 238
Score = 181 bits (460), Expect = 5e-44, Method: Composition-based stats.
Identities = 119/240 (49%), Positives = 163/240 (67%), Gaps = 2/240 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR + R +Q+R I +TR + YAEGS LV+FG+T +L AT+EE VP W++ GW+T
Sbjct: 1 MRPNDRAADQVRPIKITRNYTAYAEGSVLVEFGNTKVLCNATVEETVPRWLKGQGKGWVT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPR+T +R +REA +G+QGGR+ EIQR+I R+LR+VVDL A+G I +DCDVIQ
Sbjct: 61 AEYGMLPRATHSRTRREAANGKQGGRTMEIQRLIARSLRAVVDLKAMGEIMITVDCDVIQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTAAI+GA VA+ D H+ + +K HVAA+S G+L + DL+Y
Sbjct: 121 ADGGTRTAAISGASVAMADAFAHLVAK--GKLKANPMKSHVAAVSVGILGENILCDLEYV 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
EDS D D N VMT+ G ++E+QG+AE FS + A+L A+ I D++ QK ++
Sbjct: 179 EDSAADTDMNVVMTEEGKMIEIQGTAEGEPFSHEQLLALLASAQKGIVDIVAAQKAALAE 238
>gi|156972970|ref|YP_001443877.1| ribonuclease PH [Vibrio harveyi ATCC BAA-1116]
gi|269959372|ref|ZP_06173755.1| ribonuclease PH [Vibrio harveyi 1DA3]
gi|156524564|gb|ABU69650.1| hypothetical protein VIBHAR_00648 [Vibrio harveyi ATCC BAA-1116]
gi|269835809|gb|EEZ89885.1| ribonuclease PH [Vibrio harveyi 1DA3]
Length = 240
Score = 181 bits (460), Expect = 5e-44, Method: Composition-based stats.
Identities = 122/240 (50%), Positives = 168/240 (70%), Gaps = 2/240 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR + R+ +Q+R I +TR + YAEGS LV+FG+T +L AT+EE VP W++ GW+T
Sbjct: 3 MRPNDRKADQVRPIKITRNYTAYAEGSVLVEFGNTKVLCNATVEESVPRWLKGQGKGWVT 62
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPR+T +R +REA +G+QGGR+ EIQR+I R+LR+VVDL A+G I +DCDVIQ
Sbjct: 63 AEYGMLPRATHSRTRREAANGKQGGRTMEIQRLIARSLRAVVDLQAMGEFMITVDCDVIQ 122
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+I+GA VA+ D QH+ D + +KGHVAA+S G+L + DL+Y
Sbjct: 123 ADGGTRTASISGASVAMADAFQHLVDS--GKLKANPMKGHVAAVSVGLLGDDVLCDLEYV 180
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
EDS D D N VMT+ G ++E+QG+AE FS + A+L AK I +++ QK ++N
Sbjct: 181 EDSAADTDMNVVMTEEGKMIEIQGTAEGEPFSHEQLMALLESAKVGITEIVAAQKAALAN 240
>gi|24375740|ref|NP_719783.1| ribonuclease PH [Shewanella oneidensis MR-1]
gi|61216058|sp|Q8E9L4|RNPH_SHEON RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|24350681|gb|AAN57227.1|AE015858_8 ribonuclease PH [Shewanella oneidensis MR-1]
Length = 237
Score = 181 bits (460), Expect = 5e-44, Method: Composition-based stats.
Identities = 121/239 (50%), Positives = 163/239 (68%), Gaps = 2/239 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR S R Q R I++TR+ + +AEGS LV+FG+T +L TA+ E VP +++ GW+T
Sbjct: 1 MRPSNRTPAQTRPITITRQFTAHAEGSVLVEFGETKVLCTASFTEGVPRFLKGQGQGWVT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPRST +R+ REA G+Q GR+QEIQR+IGRALR+ VD+ ALG I+IDCDVIQ
Sbjct: 61 AEYGMLPRSTHSRMDREAARGKQSGRTQEIQRLIGRALRACVDMKALGENTIVIDCDVIQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+ITGA VAL D L S LK +AA+S G+ G I DL+Y
Sbjct: 121 ADGGTRTASITGACVALVDALNW--ARGKGIIKSNPLKFLIAAVSVGIYNGEAISDLEYV 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
EDS + D N VMT++G I+E+QG+AE F+ + +L LAK+ I +++ +QK ++
Sbjct: 179 EDSAAETDMNVVMTETGKIIEIQGTAEGEPFTHEELIELLGLAKNSIREIVDVQKAALN 237
>gi|167563697|ref|ZP_02356613.1| ribonuclease PH [Burkholderia oklahomensis EO147]
Length = 243
Score = 181 bits (460), Expect = 5e-44, Method: Composition-based stats.
Identities = 126/238 (52%), Positives = 170/238 (71%), Gaps = 2/238 (0%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R SGR+ NQ+R++ +TRR +K+AEGS LV+FGDT ++ TA++ E+VP ++R+ GW+TA
Sbjct: 7 RPSGRRANQLRDVRITRRYTKHAEGSVLVEFGDTKVICTASVAERVPEFLRDRGQGWLTA 66
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
EYGMLPR+T R REA G+Q GR+QEIQR+IGRALR+V DL ALG R + +DCDVIQA
Sbjct: 67 EYGMLPRATHTRSDREAARGKQTGRTQEIQRLIGRALRAVFDLDALGPRTLHLDCDVIQA 126
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
DGGTRTA+ITGA+VA HD + + + +VAAIS G+ G P++DLDY E
Sbjct: 127 DGGTRTASITGAFVAAHDAVTKLVAT--GKIPRSPITDYVAAISVGVFGGAPVLDLDYDE 184
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
DS D D N VMT SG VEVQG+AE FS+ A+L+LA+ I +L+++Q+ +
Sbjct: 185 DSACDTDMNVVMTGSGGFVEVQGTAEGVPFSRAEMNALLDLAQAGIGELVRVQRAALE 242
>gi|46015433|pdb|1R6L|A Chain A, Crystal Structure Of The Trna Processing Enzyme Rnase Ph
From Pseudomonas Aeruginosa
Length = 239
Score = 181 bits (460), Expect = 5e-44, Method: Composition-based stats.
Identities = 121/239 (50%), Positives = 159/239 (66%), Gaps = 2/239 (0%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R SGR +Q+R I +TR +K+AEGS LV+FGDT ++ T + E VP +++ GW+TA
Sbjct: 3 RPSGRAADQLRPIRITRHYTKHAEGSVLVEFGDTKVICTVSAESGVPRFLKGQGQGWLTA 62
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
EYG LPRSTG R +REA G+QGGR+ EIQR+IGR+LR+ +DLS LG + IDCDVIQA
Sbjct: 63 EYGXLPRSTGERNQREASRGKQGGRTLEIQRLIGRSLRAALDLSKLGENTLYIDCDVIQA 122
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
DGGTRTA+ITGA VAL D L ++ LK VAA+S G+ G P++DLDY E
Sbjct: 123 DGGTRTASITGATVALIDALAVLKKR--GALKGNPLKQXVAAVSVGIYQGVPVLDLDYLE 180
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
DS + D N V TD+G +EVQG+AE A F A L LA+ +L +LQ+ ++
Sbjct: 181 DSAAETDLNVVXTDAGGFIEVQGTAEGAPFRPAELNAXLELAQQGXQELFELQRAALAE 239
>gi|304310165|ref|YP_003809763.1| Ribonuclease PH [gamma proteobacterium HdN1]
gi|301795898|emb|CBL44099.1| Ribonuclease PH [gamma proteobacterium HdN1]
Length = 238
Score = 181 bits (460), Expect = 5e-44, Method: Composition-based stats.
Identities = 117/239 (48%), Positives = 163/239 (68%), Gaps = 2/239 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR SGR+ ++R+I++TR + +AEGS LV+FG+T ++ TA+ E VP +++ T GW+T
Sbjct: 1 MRPSGRKPEELRKINITRDYTCHAEGSVLVEFGNTKVICTASATEGVPRFLKGTGRGWVT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPRST +R+ REA G+QGGR+ EIQR+I R+LR+ VDL LG I +DCDVIQ
Sbjct: 61 AEYGMLPRSTHDRMDREASRGKQGGRTLEIQRLIARSLRAAVDLKLLGENTIYVDCDVIQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+ITG VAL D L + L+ +A++S G+ G P++DLDY
Sbjct: 121 ADGGTRTASITGGCVALVDALSFLLKK--GTIKQDPLQRLIASVSVGIYKGVPVLDLDYP 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
EDS + D N VMT G +VEVQG+AE F+++ AM+ LA+ I +L LQ+ ++
Sbjct: 179 EDSKAETDMNVVMTQHGGLVEVQGTAEAEPFTREQMNAMMELAEKGIGELFLLQQKALN 237
>gi|225021578|ref|ZP_03710770.1| hypothetical protein CORMATOL_01599 [Corynebacterium matruchotii
ATCC 33806]
gi|224945569|gb|EEG26778.1| hypothetical protein CORMATOL_01599 [Corynebacterium matruchotii
ATCC 33806]
Length = 242
Score = 181 bits (460), Expect = 5e-44, Method: Composition-based stats.
Identities = 102/239 (42%), Positives = 153/239 (64%), Gaps = 2/239 (0%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R GR +Q+R I +TR + GS L+++G+T ++ TA+ E+ VP + +++ GW+TA
Sbjct: 6 RADGRAPDQLRPIRITRGFTTNPAGSVLIEYGNTRVMCTASAEQGVPRFKKDSGEGWLTA 65
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
EY MLP +T R+ RE++ G+ GR+ EI R++GR+LR+ +DL+ LG I IDCDV+QA
Sbjct: 66 EYAMLPAATHERMPRESMRGKVKGRTHEISRLVGRSLRAAIDLTLLGENTINIDCDVLQA 125
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
DGGTRTA+ITGA++AL D + + L +AA+S G++ G+ +DL Y E
Sbjct: 126 DGGTRTASITGAYIALADAIA--HLTAQGVVPGNPLLPPIAAVSVGIIDGHVCLDLPYEE 183
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
DS DVD N +MT G VE+QG+AE TFS++ AML+ A+ +LI+ Q +
Sbjct: 184 DSRADVDLNVIMTQEGKFVEIQGTAEHNTFSREELNAMLDYAEKGCKELIEAQLASLGK 242
>gi|163802281|ref|ZP_02196176.1| ribonuclease PH [Vibrio sp. AND4]
gi|159174086|gb|EDP58896.1| ribonuclease PH [Vibrio sp. AND4]
Length = 238
Score = 181 bits (460), Expect = 5e-44, Method: Composition-based stats.
Identities = 122/240 (50%), Positives = 167/240 (69%), Gaps = 2/240 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR + R+ +Q+R I +TR + YAEGS LV+FG+T +L AT+EE VP W++ GW+T
Sbjct: 1 MRPNDRKADQVRPIKITRNYTAYAEGSVLVEFGNTKVLCNATVEESVPRWLKGQGKGWVT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPR+T +R +REA SG+QGGR+ EIQR+I R+LR+VVDL A+G + +DCDVIQ
Sbjct: 61 AEYGMLPRATHSRTRREAASGKQGGRTMEIQRLIARSLRAVVDLKAMGEFMVTVDCDVIQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+I+GA VA+ D QH+ D + +KGHVAA+S G+L + DL+Y
Sbjct: 121 ADGGTRTASISGASVAMADAFQHLVDS--GKLKANPMKGHVAAVSVGLLGEDVLCDLEYV 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
EDS D D N VMT+ G ++E+QG+AE FS + A+L AK I +++ QK + N
Sbjct: 179 EDSAADTDMNVVMTEEGKMIEIQGTAEGEPFSHEQLMALLESAKIGITEIVAAQKAALEN 238
>gi|210621777|ref|ZP_03292806.1| hypothetical protein CLOHIR_00751 [Clostridium hiranonis DSM 13275]
gi|210154541|gb|EEA85547.1| hypothetical protein CLOHIR_00751 [Clostridium hiranonis DSM 13275]
Length = 449
Score = 181 bits (460), Expect = 5e-44, Method: Composition-based stats.
Identities = 117/239 (48%), Positives = 157/239 (65%), Gaps = 2/239 (0%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
RL R +++R + +T +KYA GS L++ G+T ++ TAT+E+KVP ++RNT GWI A
Sbjct: 3 RLGNRANDEIRPVKITTNFTKYAAGSVLIEMGETKVICTATVEDKVPPFLRNTGTGWINA 62
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
EY MLP ST R R++V G+ GR+QEIQR+IGRA+RSV++L LG R I +DCDVIQA
Sbjct: 63 EYSMLPSSTQQRKIRDSVRGKIDGRTQEIQRLIGRAIRSVIELDLLGERTIWVDCDVIQA 122
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
DGGTRTA+ITG +VA + + NK +K V+AIS G+L I+DL Y E
Sbjct: 123 DGGTRTASITGGFVAAAQAIYGL--YQNKEIKKLPIKNFVSAISAGVLNDEHILDLCYEE 180
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
DS VD NFVMTD G VEVQG+ E A FS++ +L L + +LIK+Q+ I
Sbjct: 181 DSAAKVDMNFVMTDKGEFVEVQGTGEEAPFSREDLNKLLELGEKGNKELIKIQRAAIPE 239
>gi|182438431|ref|YP_001826150.1| ribonuclease PH [Streptomyces griseus subsp. griseus NBRC 13350]
gi|226736942|sp|B1VVV6|RNPH_STRGG RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|178466947|dbj|BAG21467.1| putative ribonuclease PH [Streptomyces griseus subsp. griseus NBRC
13350]
Length = 245
Score = 181 bits (460), Expect = 5e-44, Method: Composition-based stats.
Identities = 117/237 (49%), Positives = 154/237 (64%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R+ GR Q+R +++ R SK+AEGS L+ FGDT + TA++ E VP W + + GW+TA
Sbjct: 3 RIDGRTPEQLRPVTIERGWSKHAEGSVLISFGDTKVFCTASVTEGVPRWRKGSGEGWVTA 62
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
EY MLPRST R REAV G+ GGR+ EI R+IGR+LR+V+D ALG I++DCDV+QA
Sbjct: 63 EYSMLPRSTNTRGDREAVRGKIGGRTHEISRLIGRSLRAVIDCKALGENTIVLDCDVLQA 122
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
DGGTRTAAITGA+VAL D + + + L VAAIS G++ G P++DL Y E
Sbjct: 123 DGGTRTAAITGAYVALADAVAWAQGKKIVKAGRKPLTDTVAAISVGIVDGTPLLDLCYEE 182
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
D + D N V T G VEVQG+AE A F + A+L+LA DL LQ+D +
Sbjct: 183 DVRAETDMNVVCTGDGRFVEVQGTAEGAPFDRKELGALLDLATAGCVDLAALQRDAL 239
>gi|121534591|ref|ZP_01666413.1| ribonuclease PH [Thermosinus carboxydivorans Nor1]
gi|121306843|gb|EAX47763.1| ribonuclease PH [Thermosinus carboxydivorans Nor1]
Length = 246
Score = 181 bits (460), Expect = 5e-44, Method: Composition-based stats.
Identities = 126/240 (52%), Positives = 162/240 (67%), Gaps = 3/240 (1%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR+ GRQ +R IS+TR K+AEGS ++ GDT ++ ATLE+KVP +++ T GWIT
Sbjct: 1 MRIDGRQAADLRPISITRHYLKHAEGSVFIEVGDTKVICAATLEDKVPPFLKGTGEGWIT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEY +LPRST R REA GR GR+ EIQR+IGRALRSVVDL ALG R I IDCDVIQ
Sbjct: 61 AEYSLLPRSTQTRNIREAAKGRLTGRTHEIQRLIGRALRSVVDLKALGERTIWIDCDVIQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+ITGA+VAL D + + K +K +AA+S G++ G ++DL Y
Sbjct: 121 ADGGTRTASITGAFVALVDAVNTIYTDPEK---PFPVKDFLAAVSVGVVDGAAVLDLCYA 177
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
EDS VD N VMT +G +VEVQG+ E+ F++ ML L + IA+LI QK+V+
Sbjct: 178 EDSAAVVDMNIVMTGNGDLVEVQGTGEKHPFTKAQLAEMLALGERGIAELIDYQKEVLGE 237
>gi|254385745|ref|ZP_05001066.1| ribonuclease PH [Streptomyces sp. Mg1]
gi|194344611|gb|EDX25577.1| ribonuclease PH [Streptomyces sp. Mg1]
Length = 244
Score = 181 bits (460), Expect = 6e-44, Method: Composition-based stats.
Identities = 114/237 (48%), Positives = 152/237 (64%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R+ GR Q+R +++ R SK+AEGS L+ FGDT + TA+ E VP W + + GW+T+
Sbjct: 3 RIDGRTPEQLRPVTIERGWSKHAEGSVLISFGDTKVFCTASFTEGVPRWRKGSGEGWVTS 62
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
EY MLPRST R RE+V G+ GGR+ EI R+IGR+LR+V+D ALG I++DCDV+QA
Sbjct: 63 EYSMLPRSTNTRGDRESVRGKIGGRTHEISRLIGRSLRAVIDYKALGENTIVLDCDVLQA 122
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
DGGTRTAAITGA+VAL D + + + L G VAA+S G++ G P++DL Y E
Sbjct: 123 DGGTRTAAITGAYVALADAVAWGQRKKLIKAGRKPLTGTVAAVSVGIVDGEPLLDLCYEE 182
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
D + D N V T G VEVQG+AE F + A+L+LA ADL LQ +
Sbjct: 183 DVRAETDMNVVCTGDGRFVEVQGTAEGEPFDRKELNALLDLAAGGCADLQALQLGAL 239
>gi|167570847|ref|ZP_02363721.1| ribonuclease PH [Burkholderia oklahomensis C6786]
Length = 243
Score = 181 bits (460), Expect = 6e-44, Method: Composition-based stats.
Identities = 126/238 (52%), Positives = 170/238 (71%), Gaps = 2/238 (0%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R SGR+ NQ+R++ +TRR +K+AEGS LV+FGDT ++ TA++ E+VP ++R+ GW+TA
Sbjct: 7 RPSGRRANQLRDVRITRRYTKHAEGSVLVEFGDTKVICTASVAERVPEFLRDRGQGWLTA 66
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
EYGMLPR+T R REA G+Q GR+QEIQR+IGRALR+V DL ALG R + +DCDVIQA
Sbjct: 67 EYGMLPRATHTRSDREAARGKQTGRTQEIQRLIGRALRAVFDLDALGPRTLHLDCDVIQA 126
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
DGGTRTA+ITGA+VA HD + + + +VAAIS G+ G P++DLDY E
Sbjct: 127 DGGTRTASITGAFVAAHDAVTKLVST--GKIPRSPITDYVAAISVGVFGGAPVLDLDYDE 184
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
DS D D N VMT SG VEVQG+AE FS+ A+L+LA+ I +L+++Q+ +
Sbjct: 185 DSACDTDMNVVMTGSGGFVEVQGTAEGVPFSRAEMNALLDLAQAGIGELVRVQRAALE 242
>gi|83719437|ref|YP_442125.1| ribonuclease PH [Burkholderia thailandensis E264]
gi|167580996|ref|ZP_02373870.1| ribonuclease PH [Burkholderia thailandensis TXDOH]
gi|167619073|ref|ZP_02387704.1| ribonuclease PH [Burkholderia thailandensis Bt4]
gi|257138313|ref|ZP_05586575.1| ribonuclease PH [Burkholderia thailandensis E264]
gi|123537265|sp|Q2SY74|RNPH_BURTA RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|83653262|gb|ABC37325.1| ribonuclease PH [Burkholderia thailandensis E264]
Length = 243
Score = 181 bits (460), Expect = 6e-44, Method: Composition-based stats.
Identities = 123/238 (51%), Positives = 169/238 (71%), Gaps = 2/238 (0%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R SGR+ +Q+R++ +TR +K+AEGS LV+FG+T ++ TA++ E+VP ++R GW+TA
Sbjct: 7 RPSGRRADQLRDVRITRHYTKHAEGSVLVEFGETKVICTASVVERVPEFLRERGQGWLTA 66
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
EYGMLPR+T R REA G+Q GR+QEIQR+IGRALR+V DL+ALG R + +DCDVIQA
Sbjct: 67 EYGMLPRATHTRSDREAARGKQTGRTQEIQRLIGRALRAVFDLNALGPRTLHLDCDVIQA 126
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
DGGTRTA+ITGA+VA HD + + + +VAAIS G+ G P++DLDY E
Sbjct: 127 DGGTRTASITGAFVAAHDAVTKLVAA--GKIARSPITDYVAAISVGVFGGAPVLDLDYDE 184
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
DS D D N VMT +G VEVQG+AE FS+ A+L+LA+ I +L++LQ+ +
Sbjct: 185 DSACDTDMNVVMTGAGGFVEVQGTAEGVPFSRAEMNALLDLAQAGIGELVRLQRAALE 242
>gi|262190382|ref|ZP_06048643.1| ribonuclease PH [Vibrio cholerae CT 5369-93]
gi|262033743|gb|EEY52222.1| ribonuclease PH [Vibrio cholerae CT 5369-93]
Length = 238
Score = 181 bits (460), Expect = 6e-44, Method: Composition-based stats.
Identities = 121/238 (50%), Positives = 163/238 (68%), Gaps = 2/238 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR R +Q+R I +TR + YAEGS LV+FG+T +L A++EE VP W++ GW+T
Sbjct: 1 MRPDNRAADQVRPIKITRHYTAYAEGSVLVEFGNTKVLCNASIEEGVPRWLKGQGKGWVT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPR+T +R +REA +G+QGGR+ EIQR+I R+LR+VVDL A+G I +DCDVIQ
Sbjct: 61 AEYGMLPRATHSRTRREATNGKQGGRTMEIQRLIARSLRAVVDLEAMGEIMITVDCDVIQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+ITGA VAL D H+ +KGHVAA+S G+L + DL+Y
Sbjct: 121 ADGGTRTASITGASVALADAFAHLIAK--GQLKKNPMKGHVAAVSVGILGEDVLCDLEYV 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
EDS D D N VMT+ G ++E+QG+AE FS + +L +AK IAD++ +QK +
Sbjct: 179 EDSAADTDMNVVMTEEGKMIEIQGTAEGEPFSHEQLLELLTVAKKGIADIVAVQKASL 236
>gi|110636340|ref|YP_676548.1| ribonuclease PH [Mesorhizobium sp. BNC1]
gi|122965408|sp|Q11B42|RNPH_MESSB RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|110287324|gb|ABG65383.1| RNAse PH [Chelativorans sp. BNC1]
Length = 238
Score = 181 bits (460), Expect = 6e-44, Method: Composition-based stats.
Identities = 150/239 (62%), Positives = 187/239 (78%), Gaps = 1/239 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR S RQ ++MR IS R VSK+AEGSCLV+FGDTH+L TA+LEEKVP W+RN+ GW+T
Sbjct: 1 MRPSRRQPDEMRAISFERGVSKHAEGSCLVRFGDTHVLCTASLEEKVPAWLRNSGKGWVT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPRSTG R++REA SG+QGGR+ EIQR++GR+LRSV+DL ALG QI +DCDV+Q
Sbjct: 61 AEYGMLPRSTGERMRREAASGKQGGRTLEIQRLVGRSLRSVIDLEALGEMQITVDCDVLQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTAAITG +VALHDCL M+ + +VLK HVAAISCG+ G P++DLDY
Sbjct: 121 ADGGTRTAAITGGFVALHDCLSWMQARQM-VTVERVLKDHVAAISCGIYDGTPVLDLDYA 179
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
EDS + DANFVMT G IVE+QG+AE A F+++ F +L LA+ I L++LQK +S
Sbjct: 180 EDSAAETDANFVMTGKGGIVEIQGTAEGAPFTEEEFHELLRLARKGIFRLVELQKMAVS 238
>gi|56694936|ref|YP_165281.1| ribonuclease PH [Ruegeria pomeroyi DSS-3]
gi|81350765|sp|Q5LWF6|RNPH_SILPO RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|56676673|gb|AAV93339.1| ribonuclease PH [Ruegeria pomeroyi DSS-3]
Length = 237
Score = 181 bits (460), Expect = 6e-44, Method: Composition-based stats.
Identities = 124/237 (52%), Positives = 166/237 (70%), Gaps = 2/237 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR SGR ++MR +S+ +K+AEGSCL+K GDTH+L TAT+E++VP +I+ + GW+T
Sbjct: 1 MRPSGRDLSEMRPVSIETGFTKHAEGSCLIKMGDTHVLCTATIEDRVPPFIKGSGLGWVT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPR+T R++REA SG+QGGR+ EIQR+IGRALR+ VD ALG RQI +DCDVIQ
Sbjct: 61 AEYGMLPRATNTRMRREAASGKQGGRTVEIQRLIGRALRAGVDRVALGERQITVDCDVIQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTR A+ITG WVAL + + + V VAA+SCG+ G P++DLDY
Sbjct: 121 ADGGTRCASITGGWVALRLAVNKLMKAGDVISDPLV--DPVAAVSCGIYAGQPVLDLDYP 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
EDS VD NF+MT SG ++EVQ SAE + F++ +L LA+ + +L+ Q
Sbjct: 179 EDSEAGVDGNFIMTGSGKLIEVQMSAEGSVFNRAQLDQLLGLAEKGVGELVAAQMAA 235
>gi|126463642|ref|YP_001044756.1| ribonuclease PH [Rhodobacter sphaeroides ATCC 17029]
gi|166228308|sp|A3PNR8|RNPH_RHOS1 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|126105306|gb|ABN77984.1| RNAse PH [Rhodobacter sphaeroides ATCC 17029]
Length = 237
Score = 181 bits (460), Expect = 6e-44, Method: Composition-based stats.
Identities = 128/239 (53%), Positives = 175/239 (73%), Gaps = 2/239 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR SGR+ +QMR +S+ V K+AEGSCL++ G+TH+L +A++E+K P +++NT GW+T
Sbjct: 1 MRPSGRKLDQMRSVSIEPNVMKHAEGSCLIRMGETHVLCSASIEDKPPPFLKNTGLGWVT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPR+T +R +REA +G+Q GR+QEIQR+IGRALR+ VD SALG RQI+IDCDV+Q
Sbjct: 61 AEYGMLPRATTSRNRREAAAGKQSGRTQEIQRLIGRALRAGVDRSALGERQIVIDCDVLQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTR A+ITG WVAL + + +S + HVAA+SCG+ G P++DLDY
Sbjct: 121 ADGGTRCASITGGWVALRLAVNKLLKA--GIIVSDPIVDHVAAVSCGIYAGQPVLDLDYA 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
EDST D NFV+T ++EVQ SAE A+FS+D +L+LA+ IA+L+ QK +
Sbjct: 179 EDSTAGTDGNFVLTGRSRMIEVQMSAEGASFSRDEMGQLLDLAEAGIAELVAAQKAALG 237
>gi|90581389|ref|ZP_01237184.1| putative ribonuclease PH [Vibrio angustum S14]
gi|90437366|gb|EAS62562.1| putative ribonuclease PH [Vibrio angustum S14]
Length = 238
Score = 181 bits (460), Expect = 6e-44, Method: Composition-based stats.
Identities = 128/240 (53%), Positives = 171/240 (71%), Gaps = 2/240 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR SGR Q+R I++TR+ + +AEGS LV+FG+T ++ TA++EE VP W++ GW+T
Sbjct: 1 MRPSGRSATQVRPITITRQYTAHAEGSVLVEFGNTKVICTASVEENVPRWLKGKGQGWVT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPR+T R +REA SG+QGGR+ EIQR+I R+LR+ VDL+ LG + I +DCDVIQ
Sbjct: 61 AEYGMLPRATHTRNRREAASGKQGGRTMEIQRLIARSLRAAVDLNVLGEQMITVDCDVIQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+ITGA VAL D + +M + + LKG VAA+S G+ G PI DL+Y
Sbjct: 121 ADGGTRTASITGAMVALVDAINYMLEKGMIKKS--PLKGMVAAVSVGIYKGEPICDLEYL 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
EDS + D N VMT+ G ++E+QG+AE FS + AML LAKD I D+I +QK + N
Sbjct: 179 EDSAAETDMNVVMTEEGKMIEIQGTAEGEAFSHEELLAMLALAKDGITDIISMQKQALEN 238
>gi|28896951|ref|NP_796556.1| ribonuclease PH [Vibrio parahaemolyticus RIMD 2210633]
gi|260365861|ref|ZP_05778355.1| tRNA nucleotidyltransferase [Vibrio parahaemolyticus K5030]
gi|260877852|ref|ZP_05890207.1| tRNA nucleotidyltransferase [Vibrio parahaemolyticus AN-5034]
gi|260895499|ref|ZP_05903995.1| tRNA nucleotidyltransferase [Vibrio parahaemolyticus Peru-466]
gi|33301645|sp|Q87T93|RNPH_VIBPA RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|28805159|dbj|BAC58440.1| ribonuclease PH [Vibrio parahaemolyticus RIMD 2210633]
gi|308088601|gb|EFO38296.1| tRNA nucleotidyltransferase [Vibrio parahaemolyticus Peru-466]
gi|308089812|gb|EFO39507.1| tRNA nucleotidyltransferase [Vibrio parahaemolyticus AN-5034]
gi|308113474|gb|EFO51014.1| tRNA nucleotidyltransferase [Vibrio parahaemolyticus K5030]
Length = 238
Score = 181 bits (460), Expect = 6e-44, Method: Composition-based stats.
Identities = 122/240 (50%), Positives = 168/240 (70%), Gaps = 2/240 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR + R+ +Q+R I +TR + YAEGS LV+FG+T +L AT+EE VP W++ GW+T
Sbjct: 1 MRPNDRKADQVRPIKITRNYTAYAEGSVLVEFGNTKVLCNATVEESVPRWLKGQGRGWVT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPR+T +R +REA +G+QGGR+ EIQR+I R+LR+VVDL A+G I +DCDVIQ
Sbjct: 61 AEYGMLPRATHSRTRREAANGKQGGRTMEIQRLIARSLRAVVDLQAMGEFMITVDCDVIQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+I+GA VA+ D QH+ D + +KGHVAA+S G+L + DL+Y
Sbjct: 121 ADGGTRTASISGASVAMADAFQHLVDS--GKLKANPMKGHVAAVSVGLLGDEVLCDLEYV 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
EDS D D N VMT+ G ++E+QG+AE FS + A+L AK I +++ QK ++N
Sbjct: 179 EDSAADTDMNVVMTEEGKMIEIQGTAEGEPFSHEQLMALLESAKVGITEIVAAQKAALAN 238
>gi|37528679|ref|NP_932024.1| ribonuclease PH [Photorhabdus luminescens subsp. laumondii TTO1]
gi|61215997|sp|Q7MAX2|RNPH_PHOLL RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|36788118|emb|CAE17242.1| ribonuclease PH (RNase PH) (tRNA nucleotidyltransferase)
[Photorhabdus luminescens subsp. laumondii TTO1]
Length = 242
Score = 181 bits (459), Expect = 6e-44, Method: Composition-based stats.
Identities = 119/240 (49%), Positives = 159/240 (66%), Gaps = 2/240 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR +GR Q+R I++TR +K+AEGS LV+FGDT +L A++EE VP +++ GW+T
Sbjct: 1 MRPTGRAAEQVRPITITRHYTKHAEGSVLVEFGDTKVLCNASVEEGVPRFLKGQGQGWVT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPRST R REA G+QGGR+ EIQR+I R+LR+ VDL LG I +DCDVIQ
Sbjct: 61 AEYGMLPRSTHTRNAREAARGKQGGRTMEIQRLIARSLRAAVDLKKLGEYTITLDCDVIQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+ITGA VAL D L + + + LK VAA+S G++ G DL+Y
Sbjct: 121 ADGGTRTASITGACVALVDALNKIVEAGKLKES--PLKSMVAAVSVGIVDGEGRCDLEYV 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
EDS + D N VM + G ++EVQG+AE FS D ++L LAK + D+ Q++ +
Sbjct: 179 EDSAAETDMNVVMMEDGRMIEVQGTAEGEPFSHDELLSLLALAKGGLEDIFDAQRNALKQ 238
>gi|297618203|ref|YP_003703362.1| ribonuclease PH [Syntrophothermus lipocalidus DSM 12680]
gi|297146040|gb|ADI02797.1| ribonuclease PH [Syntrophothermus lipocalidus DSM 12680]
Length = 241
Score = 181 bits (459), Expect = 6e-44, Method: Composition-based stats.
Identities = 123/240 (51%), Positives = 166/240 (69%), Gaps = 2/240 (0%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R SGR ++ R I++ +K+A GS L++ GDT ++ TA++E+KVP +++ T GW+TA
Sbjct: 3 RTSGRAFDEPRPINIITGYTKFAPGSVLIETGDTRVICTASVEDKVPPFLKGTGTGWVTA 62
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
EY MLP ST R RE GR GR+ EIQR+IGRALR+VVD+SALG R + IDCDVIQA
Sbjct: 63 EYSMLPGSTPTRTAREVTRGRVSGRTSEIQRLIGRALRAVVDMSALGERTVWIDCDVIQA 122
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
DGGTRTA+ITGA+VAL+ +Q +++ + +VAA S G++ G P++DL+YGE
Sbjct: 123 DGGTRTASITGAFVALYLAMQKLKES--GIIERLPVTDYVAATSVGIVRGIPLLDLEYGE 180
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
DS +VD N VMT+SG VE+QG+AE FSQD +L LAK I+ LI QK V+ E
Sbjct: 181 DSEAEVDMNVVMTESGKFVEIQGTAENNPFSQDELDELLRLAKKGISILIAKQKAVLGAE 240
>gi|213965923|ref|ZP_03394114.1| ribonuclease PH [Corynebacterium amycolatum SK46]
gi|213951501|gb|EEB62892.1| ribonuclease PH [Corynebacterium amycolatum SK46]
Length = 253
Score = 181 bits (459), Expect = 6e-44, Method: Composition-based stats.
Identities = 110/238 (46%), Positives = 156/238 (65%), Gaps = 2/238 (0%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R GR ++MR++++TR + GS LV FG+T ++ TA++E+ VP + R++ GW+TA
Sbjct: 10 RADGRAVDEMRKVTITRGFTDNPAGSVLVTFGNTRVMCTASVEQSVPRFKRDSGEGWLTA 69
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
EY MLP ST R+ RE++ G+ GR+ EI R+IGR+LR+ +DL LG I IDCDV+QA
Sbjct: 70 EYSMLPASTHERMPRESMRGKVKGRTHEISRLIGRSLRAAIDLKELGENTINIDCDVLQA 129
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
DGGTRTA+ITGA+VAL D L ++ LK VAA+S G++ G +DL Y E
Sbjct: 130 DGGTRTASITGAYVALADALTYLHAV--GAVPGTPLKAPVAAVSVGIIDGRVCLDLPYEE 187
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
DS +VD N VMT G VE+QG+ E TF +D ML+ A+ + +LI LQ++V+
Sbjct: 188 DSRAEVDLNVVMTAEGKFVEIQGTGEEGTFDRDQLNDMLDSAEKGLRELIALQQEVLR 245
>gi|221640718|ref|YP_002526980.1| ribonuclease PH [Rhodobacter sphaeroides KD131]
gi|254808599|sp|B9KPU4|RNPH_RHOSK RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|221161499|gb|ACM02479.1| Ribonuclease PH [Rhodobacter sphaeroides KD131]
Length = 237
Score = 181 bits (459), Expect = 6e-44, Method: Composition-based stats.
Identities = 127/239 (53%), Positives = 175/239 (73%), Gaps = 2/239 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR SGR+ +QMR +S+ V K+AEGSCL++ G+TH+L +A++E+K P +++NT GW+T
Sbjct: 1 MRPSGRKLDQMRSVSIEPNVMKHAEGSCLIRMGETHVLCSASIEDKPPPFLKNTGLGWVT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPR+T +R +REA +G+Q GR+QEIQR+IGRALR+ VD SALG RQI+IDCDV+Q
Sbjct: 61 AEYGMLPRATTSRNRREAAAGKQSGRTQEIQRLIGRALRAGVDRSALGERQIVIDCDVLQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTR A+ITG WVAL + + +S + +VAA+SCG+ G P++DLDY
Sbjct: 121 ADGGTRCASITGGWVALRLAVNKLLKA--GIIVSDPIVDNVAAVSCGIYAGQPVLDLDYA 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
EDST D NFV+T ++EVQ SAE A+FS+D +L+LA+ IA+L+ QK +
Sbjct: 179 EDSTAGTDGNFVLTGRSRMIEVQMSAEGASFSRDEMGQLLDLAEAGIAELVAAQKAALG 237
>gi|91204195|emb|CAJ71848.1| strongly similar to ribonuclease PH [Candidatus Kuenenia
stuttgartiensis]
Length = 238
Score = 181 bits (459), Expect = 7e-44, Method: Composition-based stats.
Identities = 113/239 (47%), Positives = 161/239 (67%), Gaps = 2/239 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR+ R+ +++R +++TR +KY+ GS LV+ G+T ++ TA++EE VP I+NT GWIT
Sbjct: 1 MRVDNRKYDELRPVTITRNFTKYSAGSVLVESGNTKVICTASIEEYVPPHIKNTGTGWIT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEY +LP +T +RV RE+ G+ GR+ EIQR+IGR+LR++ DL+ L R I IDCDVIQ
Sbjct: 61 AEYSLLPGATPSRVPRESTKGKISGRTHEIQRLIGRSLRAICDLTLLKERTIWIDCDVIQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTAAITG+++AL D +Q + D + L VAAIS G++ ++DL Y
Sbjct: 121 ADGGTRTAAITGSYIALADAVQWLLDKN--VIKENPLINSVAAISAGIVNNIALLDLCYA 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
ED++ VD NFVMT SG +EVQG+ E F +D ML LA I ++ ++QK +
Sbjct: 179 EDASAQVDMNFVMTGSGKYIEVQGTGEEYAFDEDQLAKMLTLAHKGICEITEIQKKALG 237
>gi|53720176|ref|YP_109162.1| ribonuclease PH [Burkholderia pseudomallei K96243]
gi|53726007|ref|YP_103672.1| ribonuclease PH [Burkholderia mallei ATCC 23344]
gi|124386333|ref|YP_001028601.1| ribonuclease PH [Burkholderia mallei NCTC 10229]
gi|126449191|ref|YP_001081500.1| ribonuclease PH [Burkholderia mallei NCTC 10247]
gi|126454192|ref|YP_001067258.1| ribonuclease PH [Burkholderia pseudomallei 1106a]
gi|134280511|ref|ZP_01767222.1| ribonuclease PH [Burkholderia pseudomallei 305]
gi|162139483|ref|YP_992156.2| ribonuclease PH [Burkholderia mallei SAVP1]
gi|162210051|ref|YP_334425.2| ribonuclease PH [Burkholderia pseudomallei 1710b]
gi|167739724|ref|ZP_02412498.1| ribonuclease PH [Burkholderia pseudomallei 14]
gi|167816928|ref|ZP_02448608.1| ribonuclease PH [Burkholderia pseudomallei 91]
gi|167825331|ref|ZP_02456802.1| ribonuclease PH [Burkholderia pseudomallei 9]
gi|167846833|ref|ZP_02472341.1| ribonuclease PH [Burkholderia pseudomallei B7210]
gi|167895425|ref|ZP_02482827.1| ribonuclease PH [Burkholderia pseudomallei 7894]
gi|167912075|ref|ZP_02499166.1| ribonuclease PH [Burkholderia pseudomallei 112]
gi|167920049|ref|ZP_02507140.1| ribonuclease PH [Burkholderia pseudomallei BCC215]
gi|226193870|ref|ZP_03789472.1| tRNA nucleotidyltransferase [Burkholderia pseudomallei Pakistan 9]
gi|242317328|ref|ZP_04816344.1| tRNA nucleotidyltransferase [Burkholderia pseudomallei 1106b]
gi|254175672|ref|ZP_04882332.1| ribonuclease PH [Burkholderia mallei ATCC 10399]
gi|254181028|ref|ZP_04887626.1| ribonuclease PH [Burkholderia pseudomallei 1655]
gi|254191874|ref|ZP_04898377.1| ribonuclease PH [Burkholderia pseudomallei Pasteur 52237]
gi|254202370|ref|ZP_04908733.1| ribonuclease PH [Burkholderia mallei FMH]
gi|254259675|ref|ZP_04950729.1| tRNA nucleotidyltransferase [Burkholderia pseudomallei 1710a]
gi|254298852|ref|ZP_04966302.1| ribonuclease PH [Burkholderia pseudomallei 406e]
gi|254356396|ref|ZP_04972672.1| ribonuclease PH [Burkholderia mallei 2002721280]
gi|61215844|sp|Q62HZ8|RNPH_BURMA RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|61215857|sp|Q63RV5|RNPH_BURPS RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|166228270|sp|A3MML4|RNPH_BURM7 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|166228271|sp|A2S9I2|RNPH_BURM9 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|166228272|sp|A3NY37|RNPH_BURP0 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|52210590|emb|CAH36573.1| ribonuclease PH [Burkholderia pseudomallei K96243]
gi|52429430|gb|AAU50023.1| ribonuclease PH [Burkholderia mallei ATCC 23344]
gi|124294353|gb|ABN03622.1| tRNA nucleotidyltransferase [Burkholderia mallei NCTC 10229]
gi|126227834|gb|ABN91374.1| ribonuclease PH [Burkholderia pseudomallei 1106a]
gi|126242061|gb|ABO05154.1| tRNA nucleotidyltransferase [Burkholderia mallei NCTC 10247]
gi|134248518|gb|EBA48601.1| ribonuclease PH [Burkholderia pseudomallei 305]
gi|147746617|gb|EDK53694.1| ribonuclease PH [Burkholderia mallei FMH]
gi|148025393|gb|EDK83547.1| ribonuclease PH [Burkholderia mallei 2002721280]
gi|157808936|gb|EDO86106.1| ribonuclease PH [Burkholderia pseudomallei 406e]
gi|157939545|gb|EDO95215.1| ribonuclease PH [Burkholderia pseudomallei Pasteur 52237]
gi|160696716|gb|EDP86686.1| ribonuclease PH [Burkholderia mallei ATCC 10399]
gi|184211567|gb|EDU08610.1| ribonuclease PH [Burkholderia pseudomallei 1655]
gi|225934175|gb|EEH30160.1| tRNA nucleotidyltransferase [Burkholderia pseudomallei Pakistan 9]
gi|242140567|gb|EES26969.1| tRNA nucleotidyltransferase [Burkholderia pseudomallei 1106b]
gi|254218364|gb|EET07748.1| tRNA nucleotidyltransferase [Burkholderia pseudomallei 1710a]
Length = 243
Score = 181 bits (459), Expect = 7e-44, Method: Composition-based stats.
Identities = 124/239 (51%), Positives = 172/239 (71%), Gaps = 2/239 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+R SGR+ +Q+R++ +TR +K+AEG+ LV+FGDT ++ TA++ E+VP ++R GW+T
Sbjct: 6 LRPSGRRADQLRDVRITRHYTKHAEGAVLVEFGDTKVICTASVAERVPEFLRERGQGWLT 65
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPR+T R REA G+Q GR+QEIQR+IGRALR+V DL+ALG R + +DCDVIQ
Sbjct: 66 AEYGMLPRATHTRSDREAARGKQTGRTQEIQRLIGRALRAVFDLNALGPRTLHLDCDVIQ 125
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+ITGA+VA HD + + + + +VAAIS G+ G P++DLDY
Sbjct: 126 ADGGTRTASITGAFVAAHDAVTKLVAAGRIARS--PITDYVAAISVGVFGGTPVLDLDYD 183
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
EDS D D N VMT +G VEVQG+AE A FS+ A+L+LA+ I +L++LQ+ +
Sbjct: 184 EDSACDTDMNVVMTGAGGFVEVQGTAEGAPFSRTEMNALLDLAQAGIGELVRLQRAALE 242
>gi|308047849|ref|YP_003911415.1| ribonuclease PH [Ferrimonas balearica DSM 9799]
gi|307630039|gb|ADN74341.1| ribonuclease PH [Ferrimonas balearica DSM 9799]
Length = 238
Score = 181 bits (459), Expect = 7e-44, Method: Composition-based stats.
Identities = 123/237 (51%), Positives = 160/237 (67%), Gaps = 2/237 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR +GR +Q+R +S+TR + +AEGS LV FG+T ++ TA++EE VP ++R GWIT
Sbjct: 1 MRSNGRAADQVRPVSITRNFTAHAEGSVLVAFGNTKVICTASVEESVPRFLRGKGQGWIT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPR+T +R REA G+Q GR+ EIQR+IGR+LR+ VDL ALG I IDCDVIQ
Sbjct: 61 AEYGMLPRATHSRNDREAARGKQSGRTMEIQRLIGRSLRAAVDLEALGEVTITIDCDVIQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTAAITGA VAL D + H++ LK +AAIS G++ + + DLDY
Sbjct: 121 ADGGTRTAAITGACVALMDAIDHLKAKGVLKVS--PLKQQIAAISVGVVGEHAVCDLDYV 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
EDS+ + D N VM + G I+EVQG+AE F+ + M+ LAK I LI QK
Sbjct: 179 EDSSAETDMNVVMAEDGRIIEVQGTAEGEPFTYEQMLEMMALAKTGIEQLIAAQKAA 235
>gi|120597163|ref|YP_961737.1| ribonuclease PH [Shewanella sp. W3-18-1]
gi|146291563|ref|YP_001181987.1| ribonuclease PH [Shewanella putrefaciens CN-32]
gi|166228319|sp|A4Y2K5|RNPH_SHEPC RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|166228321|sp|A1RET8|RNPH_SHESW RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|120557256|gb|ABM23183.1| RNAse PH [Shewanella sp. W3-18-1]
gi|145563253|gb|ABP74188.1| RNAse PH [Shewanella putrefaciens CN-32]
gi|319424735|gb|ADV52809.1| ribonuclease PH [Shewanella putrefaciens 200]
Length = 237
Score = 181 bits (459), Expect = 7e-44, Method: Composition-based stats.
Identities = 121/239 (50%), Positives = 163/239 (68%), Gaps = 2/239 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR S R Q R I++TR+ + +AEGS LV+FG+T +L TA+ E VP +++ GW+T
Sbjct: 1 MRPSNRTPAQTRPITITRQFTAHAEGSVLVEFGETKVLCTASFTEGVPRFLKGQGQGWVT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPRST +R+ REA G+Q GR+QEIQR+IGRALR+ VD+ ALG I+IDCDVIQ
Sbjct: 61 AEYGMLPRSTHSRMDREAARGKQSGRTQEIQRLIGRALRACVDMKALGENTIVIDCDVIQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+ITGA VAL D L S LK +AA+S G+ G I DL+Y
Sbjct: 121 ADGGTRTASITGACVALVDALNW--ARGKGIIKSNPLKFLIAAVSVGIYKGEAISDLEYI 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
EDS + D N VMT++G I+E+QG+AE F+ + +L LAK+ I +++ +QK ++
Sbjct: 179 EDSAAETDMNVVMTETGKIIEIQGTAEGEPFTHEELIELLGLAKNSIREIVDVQKAALN 237
>gi|332559695|ref|ZP_08414017.1| ribonuclease PH [Rhodobacter sphaeroides WS8N]
gi|332277407|gb|EGJ22722.1| ribonuclease PH [Rhodobacter sphaeroides WS8N]
Length = 237
Score = 181 bits (459), Expect = 7e-44, Method: Composition-based stats.
Identities = 128/239 (53%), Positives = 174/239 (72%), Gaps = 2/239 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR SGR+ +QMR +S+ V K+AEGSCL++ G+TH+L +A++E+K P +++NT GW+T
Sbjct: 1 MRPSGRKLDQMRSVSIEPNVMKHAEGSCLIRMGETHVLCSASIEDKPPPFLKNTGLGWVT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPR+T +R +REA +G+Q GR+QEIQR+IGRALR+ VD SALG RQI+IDCDV+Q
Sbjct: 61 AEYGMLPRATTSRNRREAAAGKQSGRTQEIQRLIGRALRAGVDRSALGERQIVIDCDVLQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTR A+ITG WVAL + + +S + HVAA+SCG+ G P++DLDY
Sbjct: 121 ADGGTRCASITGGWVALRLAVNKLLKA--GIIVSDPIVDHVAAVSCGIYAGQPVLDLDYA 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
EDST D NFV T ++EVQ SAE A+FS+D +L+LA+ IA+L+ QK +
Sbjct: 179 EDSTAGTDGNFVFTGRSRMIEVQMSAEGASFSRDEMGQLLDLAEAGIAELVAAQKAALG 237
>gi|190149324|ref|YP_001967849.1| ribonuclease PH [Actinobacillus pleuropneumoniae serovar 7 str.
AP76]
gi|307244856|ref|ZP_07526955.1| Ribonuclease PH [Actinobacillus pleuropneumoniae serovar 1 str.
4074]
gi|307253810|ref|ZP_07535664.1| Ribonuclease PH [Actinobacillus pleuropneumoniae serovar 9 str.
CVJ13261]
gi|307258266|ref|ZP_07540009.1| Ribonuclease PH [Actinobacillus pleuropneumoniae serovar 11 str.
56153]
gi|307262637|ref|ZP_07544267.1| Ribonuclease PH [Actinobacillus pleuropneumoniae serovar 13 str.
N273]
gi|226736878|sp|B3GZP5|RNPH_ACTP7 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|189914455|gb|ACE60707.1| ribonuclease PH [Actinobacillus pleuropneumoniae serovar 7 str.
AP76]
gi|306854301|gb|EFM86507.1| Ribonuclease PH [Actinobacillus pleuropneumoniae serovar 1 str.
4074]
gi|306863294|gb|EFM95234.1| Ribonuclease PH [Actinobacillus pleuropneumoniae serovar 9 str.
CVJ13261]
gi|306867726|gb|EFM99571.1| Ribonuclease PH [Actinobacillus pleuropneumoniae serovar 11 str.
56153]
gi|306872060|gb|EFN03774.1| Ribonuclease PH [Actinobacillus pleuropneumoniae serovar 13 str.
N273]
Length = 238
Score = 181 bits (459), Expect = 7e-44, Method: Composition-based stats.
Identities = 122/239 (51%), Positives = 164/239 (68%), Gaps = 2/239 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR + R+ NQ+R + +TR ++YAEGS LV+FG+T +L AT+EE VP +++ + GW+T
Sbjct: 1 MRPNNRELNQVRPVKITRHYTRYAEGSVLVEFGETKVLCNATVEETVPRFLKGQQQGWVT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPRST +R++REA G+QGGR+ EIQR+I R+LR+VVDL ALG R + +DCDVIQ
Sbjct: 61 AEYGMLPRSTHSRMQREAAKGKQGGRTMEIQRLIARSLRAVVDLKALGERTVTVDCDVIQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTAAITGA VALHD + + +KG VAAIS G++ G + DL+Y
Sbjct: 121 ADGGTRTAAITGACVALHDAMSKLVAD--GVLKENPMKGLVAAISVGIVDGNAVCDLEYV 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
EDS + D N VM + G +VEVQG+AE FS +L+LA I L+ Q+ +
Sbjct: 179 EDSNAETDMNVVMVEDGRLVEVQGTAEGEPFSHMELLQLLDLAHQGINQLLDAQRKALG 237
>gi|315645714|ref|ZP_07898838.1| hypothetical protein PVOR_09560 [Paenibacillus vortex V453]
gi|315279192|gb|EFU42502.1| hypothetical protein PVOR_09560 [Paenibacillus vortex V453]
Length = 252
Score = 181 bits (459), Expect = 7e-44, Method: Composition-based stats.
Identities = 113/239 (47%), Positives = 163/239 (68%), Gaps = 2/239 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR +GR+ +++R ++L+ V+KYAEGS ++ GDT +L TAT++EKVP +++ GW+T
Sbjct: 1 MRSNGRKSDELRPMNLSTHVNKYAEGSVYIEMGDTKVLITATVDEKVPPFLKGQGKGWVT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEY MLPR+T +R +REA G+ GR+ EIQR+IGRALRSVV+L ALG R I +DCDVIQ
Sbjct: 61 AEYSMLPRATQSRNQREANRGKLTGRTMEIQRLIGRALRSVVNLYALGERTITLDCDVIQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRT +ITGA+VAL + + + + ++A+IS G+ G ++DL+Y
Sbjct: 121 ADGGTRTTSITGAFVALAIAVNKIAEQHKLAV--FPITDYLASISVGIAGGQALLDLNYE 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
EDS VD N VMT G VEVQG+ E + FS++ +L L + I +LI+ Q++ +
Sbjct: 179 EDSKAKVDMNLVMTGGGKFVEVQGTGEESPFSREELDQILELGEKGIRELIERQQEALG 237
>gi|71909462|ref|YP_287049.1| ribonuclease PH [Dechloromonas aromatica RCB]
gi|123626372|sp|Q479A2|RNPH_DECAR RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|71849083|gb|AAZ48579.1| RNAse PH [Dechloromonas aromatica RCB]
Length = 238
Score = 181 bits (459), Expect = 7e-44, Method: Composition-based stats.
Identities = 121/239 (50%), Positives = 167/239 (69%), Gaps = 2/239 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR S RQ +Q+R + +TR +++AEGS L++ GDT +L TA++EE VP ++R GW+T
Sbjct: 1 MRPSQRQPDQLRTVRITRNFTRHAEGSVLIEMGDTRVLCTASVEENVPPFLRGKGQGWVT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPR+T R REA G+Q GR+QEIQR+IGRALRSV+DL ALG RQI +DCDV+Q
Sbjct: 61 AEYGMLPRATHTRSSREAAKGKQTGRTQEIQRLIGRALRSVIDLKALGERQITLDCDVLQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTR A+ITGAWVAL++ + + ++ HVAAIS G+ G P++DLDY
Sbjct: 121 ADGGTRCASITGAWVALYEACDKLVQA--GKLPANPVRDHVAAISVGIYKGAPVLDLDYP 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
EDS D D N VMT +G IVE+QG+AE F+++ +++LA + L+ Q+ ++
Sbjct: 179 EDSDCDTDMNVVMTGAGGIVEIQGTAEGEPFTREQMSVLVDLATLGVRHLVAAQQSALA 237
>gi|163849851|ref|YP_001637894.1| ribonuclease PH [Methylobacterium extorquens PA1]
gi|240137077|ref|YP_002961546.1| Ribonuclease PH (RNase PH) (tRNA nucleotidyltransferase)
[Methylobacterium extorquens AM1]
gi|226736915|sp|A9VZR7|RNPH_METEP RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|163661456|gb|ABY28823.1| ribonuclease PH [Methylobacterium extorquens PA1]
gi|240007043|gb|ACS38269.1| Ribonuclease PH (RNase PH) (tRNA nucleotidyltransferase)
[Methylobacterium extorquens AM1]
Length = 237
Score = 181 bits (459), Expect = 8e-44, Method: Composition-based stats.
Identities = 136/239 (56%), Positives = 174/239 (72%), Gaps = 2/239 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR S R + MR+++L R V++YAEGSCLV FG+T +L TA+LEE+ P W+R + GW+T
Sbjct: 1 MRPSKRAADAMRDVTLERAVARYAEGSCLVTFGNTRVLCTASLEERGPPWLRGSGKGWVT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEY MLPR+T R +RE SG+ GR+QEIQR+IGR+LR+V +L ALG RQI +DCDVIQ
Sbjct: 61 AEYAMLPRATHERTRREVNSGKPSGRTQEIQRLIGRSLRAVTNLPALGERQITVDCDVIQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+ITGAWVALHDC M S LK HVAA+SCG+ G P++DLDY
Sbjct: 121 ADGGTRTASITGAWVALHDCFAWMRARS--IISVDPLKDHVAAVSCGIYKGQPVLDLDYA 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
EDS + DANFV+T G IVEVQG+AE F+ + F +L LAK +A L++LQ+ I+
Sbjct: 179 EDSAAETDANFVVTGKGGIVEVQGTAEMEPFTDEQFLELLRLAKGGVAGLVELQRKAIA 237
>gi|262281423|ref|ZP_06059204.1| ribonuclease PH [Acinetobacter calcoaceticus RUH2202]
gi|262257249|gb|EEY75986.1| ribonuclease PH [Acinetobacter calcoaceticus RUH2202]
Length = 238
Score = 181 bits (459), Expect = 8e-44, Method: Composition-based stats.
Identities = 123/239 (51%), Positives = 163/239 (68%), Gaps = 2/239 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR+ R+ +Q+RE+ +TR ++YAEGS LV+FG T +L TA+++ VP +++ GW+T
Sbjct: 1 MRIDQRELDQLREVKITRNYTRYAEGSVLVEFGHTKVLCTASIDNSVPRFLKGKGQGWVT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPRST +R REA G+Q GR+QEIQR+IGR+LR++VDL LG I IDCDVIQ
Sbjct: 61 AEYGMLPRSTHSRCDREAARGKQSGRTQEIQRLIGRSLRAMVDLKKLGENTITIDCDVIQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTAAITGA VAL D + S K LKG VAAIS GM ++DL Y
Sbjct: 121 ADGGTRTAAITGAAVALVDAMN--VLLSQKKIKHDPLKGLVAAISVGMYQDEVLLDLCYE 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
EDS D N VMT +G +E+QG+AE F++ AML +A+ IA+L+K Q++ +
Sbjct: 179 EDSNCQTDLNVVMTQAGEFIEIQGTAEDKPFTRAQSNAMLEMAEKGIAELVKKQQEALG 237
>gi|218528482|ref|YP_002419298.1| ribonuclease PH [Methylobacterium chloromethanicum CM4]
gi|254808592|sp|B7L092|RNPH_METC4 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|218520785|gb|ACK81370.1| ribonuclease PH [Methylobacterium chloromethanicum CM4]
Length = 237
Score = 181 bits (458), Expect = 8e-44, Method: Composition-based stats.
Identities = 136/239 (56%), Positives = 174/239 (72%), Gaps = 2/239 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR S R + MR+++L R V++YAEGSCLV FG+T +L TA+LEE+ P W+R + GW+T
Sbjct: 1 MRPSKRAADAMRDVTLERAVARYAEGSCLVTFGNTRVLCTASLEERGPPWLRGSGKGWVT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEY MLPR+T R +RE SG+ GR+QEIQR+IGR+LR+V +L ALG RQI +DCDVIQ
Sbjct: 61 AEYAMLPRATHERTRREVNSGKPSGRTQEIQRLIGRSLRAVTNLPALGERQITVDCDVIQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+ITGAWVALHDC M S LK HVAA+SCG+ G P++DLDY
Sbjct: 121 ADGGTRTASITGAWVALHDCFAWMRARS--IISVDPLKDHVAAVSCGIYKGQPVLDLDYA 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
EDS + DANFV+T G IVEVQG+AE F+ + F +L LAK +A L++LQ+ I+
Sbjct: 179 EDSAAETDANFVVTGKGGIVEVQGTAELEPFTDEQFLELLRLAKGGVAGLVELQRKAIA 237
>gi|330831556|ref|YP_004394508.1| RNase PH [Aeromonas veronii B565]
gi|328806692|gb|AEB51891.1| RNase PH [Aeromonas veronii B565]
Length = 238
Score = 181 bits (458), Expect = 8e-44, Method: Composition-based stats.
Identities = 124/238 (52%), Positives = 163/238 (68%), Gaps = 2/238 (0%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R S R Q+R +++TR +K+AEGS LV+FG+T +L TA+++ VP +++ GW+TA
Sbjct: 3 RPSDRSAAQLRPVTITRNFTKHAEGSVLVEFGNTRVLCTASVDTSVPRFLKGKNQGWVTA 62
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
EYGMLPRST +R+ REA SG+Q GR+ EI R+I R+LR+ VDL+ALG I +DCDV+QA
Sbjct: 63 EYGMLPRSTHSRMNREAASGKQSGRTLEISRLIARSLRAAVDLTALGEHSITVDCDVLQA 122
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
DGGTRTA+ITGA VAL D L M + Q LK +AA+S GM G I DL+Y E
Sbjct: 123 DGGTRTASITGACVALVDALNWMVEKGMIKQS--PLKQMIAAVSVGMYQGEAICDLEYIE 180
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
DS + D N VMT+ G I+EVQG+AE F+ + ML LAK IAD+I LQK +S
Sbjct: 181 DSAAETDMNVVMTEDGRIIEVQGTAEAEPFTHEELLEMLALAKGGIADIIALQKQSLS 238
>gi|297199995|ref|ZP_06917392.1| ribonuclease PH [Streptomyces sviceus ATCC 29083]
gi|197710467|gb|EDY54501.1| ribonuclease PH [Streptomyces sviceus ATCC 29083]
Length = 245
Score = 181 bits (458), Expect = 8e-44, Method: Composition-based stats.
Identities = 112/237 (47%), Positives = 155/237 (65%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R+ GR Q+R +++ R SK+AEGS LV FGDT + TA++ E VP W + + GW+TA
Sbjct: 3 RIDGRTPEQLRPVTIERGWSKHAEGSVLVSFGDTKVFCTASVTEGVPRWRKGSGEGWVTA 62
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
EY MLPR+T R RE+V G+ GGR+ EI R+IGR+LR+V+D ALG I++DCDV+QA
Sbjct: 63 EYSMLPRATNTRGDRESVRGKIGGRTHEISRLIGRSLRAVIDYKALGENTIVLDCDVLQA 122
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
DGGTRTAAITGA+VAL D + + + L G V+A+S G++ G P++DL Y E
Sbjct: 123 DGGTRTAAITGAYVALADAVAWAQGKKLIKAGRRPLTGTVSAVSVGIVGGVPLLDLCYEE 182
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
D + D N V T G VEVQG+AE F++D ++L+LA ++L LQ +
Sbjct: 183 DVRAETDMNVVCTGDGRFVEVQGTAEAEPFARDELNSLLDLAVLGCSELTVLQSKAL 239
>gi|77464799|ref|YP_354303.1| RNAse PH [Rhodobacter sphaeroides 2.4.1]
gi|77389217|gb|ABA80402.1| RNAse PH [Rhodobacter sphaeroides 2.4.1]
Length = 241
Score = 181 bits (458), Expect = 8e-44, Method: Composition-based stats.
Identities = 128/239 (53%), Positives = 175/239 (73%), Gaps = 2/239 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR SGR+ +QMR +S+ V K+AEGSCL++ G+TH+L +A++E+K P +++NT GW+T
Sbjct: 5 MRPSGRKLDQMRSVSIEPNVMKHAEGSCLIRMGETHVLCSASIEDKPPPFLKNTGLGWVT 64
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPR+T +R +REA +G+Q GR+QEIQR+IGRALR+ VD SALG RQI+IDCDV+Q
Sbjct: 65 AEYGMLPRATTSRNRREAAAGKQSGRTQEIQRLIGRALRAGVDRSALGERQIVIDCDVLQ 124
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTR A+ITG WVAL + + +S + HVAA+SCG+ G P++DLDY
Sbjct: 125 ADGGTRCASITGGWVALRLAVNKLLKA--GIIVSDPIVDHVAAVSCGIYAGQPVLDLDYA 182
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
EDST D NFV+T ++EVQ SAE A+FS+D +L+LA+ IA+L+ QK +
Sbjct: 183 EDSTAGTDGNFVLTGRSRMIEVQMSAEGASFSRDEMGQLLDLAEAGIAELVAAQKAALG 241
>gi|226952284|ref|ZP_03822748.1| ribonuclease PH (RNase PH), tRNA nucleotidyltransferase
[Acinetobacter sp. ATCC 27244]
gi|294648770|ref|ZP_06726228.1| tRNA nucleotidyltransferase [Acinetobacter haemolyticus ATCC 19194]
gi|226836950|gb|EEH69333.1| ribonuclease PH (RNase PH), tRNA nucleotidyltransferase
[Acinetobacter sp. ATCC 27244]
gi|292825340|gb|EFF84085.1| tRNA nucleotidyltransferase [Acinetobacter haemolyticus ATCC 19194]
Length = 238
Score = 181 bits (458), Expect = 8e-44, Method: Composition-based stats.
Identities = 124/239 (51%), Positives = 161/239 (67%), Gaps = 2/239 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR+ R +Q+RE+ +TR ++YAEGS LV+FG T +L TA+++ VP +++ GW+T
Sbjct: 1 MRIDQRALDQLREVKITRNYTRYAEGSVLVEFGHTKVLCTASIDNSVPRFLKGQGQGWVT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPRST R REA G+Q GR+QEIQR+IGR+LR++VDL LG I IDCDVIQ
Sbjct: 61 AEYGMLPRSTHTRSDREAARGKQSGRTQEIQRLIGRSLRAMVDLKKLGENTITIDCDVIQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTAAITGA VAL D + SNK LKG +AAIS GM ++DL Y
Sbjct: 121 ADGGTRTAAITGAAVALVDAMN--VLLSNKKIKQDPLKGLIAAISVGMYQDEVLLDLCYE 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
EDS D N VMT +G +E+QG+AE F++ AML LA+ IA+LI+ Q+ +
Sbjct: 179 EDSNCQTDLNVVMTQAGEFIEIQGTAEDKPFTRQQCNAMLELAEKGIAELIQKQQQALG 237
>gi|126438556|ref|YP_001059966.1| ribonuclease PH [Burkholderia pseudomallei 668]
gi|167903809|ref|ZP_02491014.1| ribonuclease PH [Burkholderia pseudomallei NCTC 13177]
gi|166228273|sp|A3NC95|RNPH_BURP6 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|126218049|gb|ABN81555.1| tRNA nucleotidyltransferase [Burkholderia pseudomallei 668]
Length = 243
Score = 181 bits (458), Expect = 8e-44, Method: Composition-based stats.
Identities = 125/239 (52%), Positives = 172/239 (71%), Gaps = 2/239 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+R SGR+ +Q+R++ +TR +K+AEG+ LV+FGDT ++ TA++ E+VP ++R GW+T
Sbjct: 6 LRPSGRRADQLRDVRITRHYTKHAEGAVLVEFGDTKVICTASVAERVPEFLRERGQGWLT 65
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPR+T R REA G+Q GR+QEIQR+IGRALR+V DL+ALG R + +DCDVIQ
Sbjct: 66 AEYGMLPRATHTRSDREAARGKQTGRTQEIQRLIGRALRAVFDLNALGPRTLHLDCDVIQ 125
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+ITGA+VA HD + + + + +VAAIS GM G P++DLDY
Sbjct: 126 ADGGTRTASITGAFVAAHDAVTKLVAAGRIARS--PITDYVAAISVGMFGGTPVLDLDYD 183
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
EDS D D N VMT +G VEVQG+AE A FS+ A+L+LA+ I +L++LQ+ +
Sbjct: 184 EDSACDTDMNVVMTGAGGFVEVQGTAEGAPFSRTEMNALLDLAQAGIGELVRLQRAALE 242
>gi|86136764|ref|ZP_01055342.1| ribonuclease PH [Roseobacter sp. MED193]
gi|85826088|gb|EAQ46285.1| ribonuclease PH [Roseobacter sp. MED193]
Length = 237
Score = 181 bits (458), Expect = 9e-44, Method: Composition-based stats.
Identities = 127/237 (53%), Positives = 166/237 (70%), Gaps = 2/237 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR S R+ N+MR +S+ +K+AEGSCL+K G+TH+L TA+LE +VP +I+ + GW+T
Sbjct: 1 MRPSNRELNEMRSVSIETGFTKHAEGSCLIKMGETHVLCTASLEPRVPSFIKGSGLGWVT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPR+T R++REA +G+QGGR+ EIQR+IGRALR+ VD ALG RQI IDCDV+Q
Sbjct: 61 AEYGMLPRATNTRMRREAAAGKQGGRTVEIQRLIGRALRAGVDRVALGERQITIDCDVLQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTR AAITG WVAL + + L V+AISCG+ G P++DLDY
Sbjct: 121 ADGGTRCAAITGGWVALRLAVNKLMKA--GEVKIDPLMDPVSAISCGIYAGQPVLDLDYP 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
EDS VD NFVMT SG ++EVQ SAE + FS+D +++LA+ +L LQK
Sbjct: 179 EDSEAGVDGNFVMTGSGKLIEVQMSAEGSVFSRDQMNQLMDLAEKGTQELAALQKAA 235
>gi|300690924|ref|YP_003751919.1| RNase PH (tRNA nucleotidyltransferase) [Ralstonia solanacearum
PSI07]
gi|299077984|emb|CBJ50625.1| RNase PH (tRNA nucleotidyltransferase) [Ralstonia solanacearum
PSI07]
Length = 238
Score = 181 bits (458), Expect = 9e-44, Method: Composition-based stats.
Identities = 128/239 (53%), Positives = 163/239 (68%), Gaps = 2/239 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR SGRQ +Q+R ++LTR +++AEGS LV FGDT +L TA++ KVP + + GW+T
Sbjct: 1 MRPSGRQPDQLRPVTLTRHYTRHAEGSVLVCFGDTQVLCTASVLPKVPPHKKGSGEGWVT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPRST R REA G+Q GR+QEIQR+IGRA+RSV DLSALG I +DCDV+Q
Sbjct: 61 AEYGMLPRSTHTRSDREAARGKQSGRTQEIQRLIGRAMRSVFDLSALGENTIHLDCDVLQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+ITGA+VA HD + + ++ VAA+S G++ G P++DLDY
Sbjct: 121 ADGGTRTASITGAFVAAHDAV--SVMRGRGLLAGEPIRDFVAAVSVGVVDGAPVLDLDYP 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
EDS D D N VMT SG VEVQG+AE F++ A+L LA I LI LQK +
Sbjct: 179 EDSACDTDMNVVMTGSGGFVEVQGTAEGTPFTRTEMDALLGLADQGIRTLIGLQKQALG 237
>gi|119900252|ref|YP_935465.1| ribonuclease PH [Azoarcus sp. BH72]
gi|166228264|sp|A1KCM3|RNPH_AZOSB RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|119672665|emb|CAL96579.1| ribonuclease PH [Azoarcus sp. BH72]
Length = 239
Score = 181 bits (458), Expect = 9e-44, Method: Composition-based stats.
Identities = 131/239 (54%), Positives = 176/239 (73%), Gaps = 2/239 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR S RQ N++R + LTRR +++AEGS LV+FGDT +L TA++EE VP +++ GW+T
Sbjct: 1 MRPSQRQANELRPVRLTRRYTRHAEGSVLVEFGDTRVLCTASVEEAVPPFLKGKGRGWVT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPR+T R REA G+Q GR+QEIQR+IGR+LR+VVDL+ALG RQ++IDCDV+Q
Sbjct: 61 AEYGMLPRATHTRSAREAAKGKQTGRTQEIQRLIGRSLRAVVDLAALGERQVVIDCDVLQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+ITGA+VALHD L+ + + + VAAIS G++ G P++DLDY
Sbjct: 121 ADGGTRTASITGAYVALHDALEGLVAA--GKLAANPMTDFVAAISVGIVDGVPVLDLDYT 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
EDS D D N VMT SG I+EVQG+AE FS+ A+++LA+ I L++LQK ++
Sbjct: 179 EDSGCDTDMNVVMTGSGGIIEVQGTAEGTPFSRTELNALIDLAEAGIGRLVELQKAALA 237
>gi|170693638|ref|ZP_02884796.1| ribonuclease PH [Burkholderia graminis C4D1M]
gi|170141420|gb|EDT09590.1| ribonuclease PH [Burkholderia graminis C4D1M]
Length = 246
Score = 181 bits (458), Expect = 9e-44, Method: Composition-based stats.
Identities = 128/238 (53%), Positives = 167/238 (70%), Gaps = 2/238 (0%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R SGR +Q+R++ +TR +K+AEGS LV+FGDT ++ TA++ E VP ++R+ GW+TA
Sbjct: 7 RPSGRLAHQLRDVRITRHYTKHAEGSVLVEFGDTKVICTASIAETVPSFLRDRGQGWLTA 66
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
EYGMLPR+T R REA G+Q GR+QEIQR+IGRALRSV DL LG+R + IDCDVIQA
Sbjct: 67 EYGMLPRATHTRSDREAARGKQTGRTQEIQRLIGRALRSVFDLEKLGARTLHIDCDVIQA 126
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
DGGTRTA+ITGA+VA HD + + + +VAAIS G+ G P++DLDY E
Sbjct: 127 DGGTRTASITGAFVAAHDAVSKLLAAGRIESS--PISDYVAAISVGVYDGLPVLDLDYDE 184
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
DS D D N VMT +G VE+QG+AE FS+D A+L+LA D IA LI QK+ +
Sbjct: 185 DSQCDTDMNVVMTGAGGFVEIQGTAEGVPFSRDEMNALLDLASDGIATLIAKQKEALE 242
>gi|303250534|ref|ZP_07336731.1| ribonuclease PH [Actinobacillus pleuropneumoniae serovar 6 str.
Femo]
gi|307251576|ref|ZP_07533483.1| Ribonuclease PH [Actinobacillus pleuropneumoniae serovar 6 str.
Femo]
gi|302650522|gb|EFL80681.1| ribonuclease PH [Actinobacillus pleuropneumoniae serovar 6 str.
Femo]
gi|306861040|gb|EFM93046.1| Ribonuclease PH [Actinobacillus pleuropneumoniae serovar 6 str.
Femo]
Length = 238
Score = 181 bits (458), Expect = 9e-44, Method: Composition-based stats.
Identities = 122/239 (51%), Positives = 164/239 (68%), Gaps = 2/239 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR + R+ NQ+R + +TR ++YAEGS LV+FG+T +L AT+EE VP +++ + GW+T
Sbjct: 1 MRPNNRELNQVRPVKITRHYTRYAEGSVLVEFGETKVLCNATVEETVPRFLKGQQQGWVT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPRST +R++REA G+QGGR+ EIQR+I R+LR+VVDL LG R I +DCDVIQ
Sbjct: 61 AEYGMLPRSTHSRMQREAAKGKQGGRTMEIQRLIARSLRAVVDLKVLGERTITVDCDVIQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTAAITGA VALHD + + +KG VAAIS G++ G + DL+Y
Sbjct: 121 ADGGTRTAAITGACVALHDAMSKLVAD--GVLKENPMKGLVAAISVGIVDGNAVCDLEYI 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
EDS + D N VM + G +VEVQG+AE FS +L+LA I L+ Q+ ++
Sbjct: 179 EDSNAETDMNVVMVEDGRLVEVQGTAEGEPFSHMELLQLLDLAHQGINQLLDAQRKALA 237
>gi|147677126|ref|YP_001211341.1| ribonuclease PH [Pelotomaculum thermopropionicum SI]
gi|146273223|dbj|BAF58972.1| RNase PH [Pelotomaculum thermopropionicum SI]
Length = 257
Score = 181 bits (458), Expect = 9e-44, Method: Composition-based stats.
Identities = 124/235 (52%), Positives = 164/235 (69%), Gaps = 2/235 (0%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R+ GR+ +Q+R + +TR K+AEGS L++ GDT ++ TAT+E+KVP++++ GWITA
Sbjct: 3 RIDGRKPDQLRPVRITRNYIKHAEGSVLIEIGDTRVICTATVEDKVPLFLKGEGKGWITA 62
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
EYGMLPRSTG R REA G+ GGR+ EIQR+IGR+LRSVVDL+ALG R + +DCDVIQA
Sbjct: 63 EYGMLPRSTGVRTPREAARGKIGGRTCEIQRLIGRSLRSVVDLAALGERTVWLDCDVIQA 122
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
DGGTRTA+ITGA+VAL D L +++ + VAA S G L G +DL Y E
Sbjct: 123 DGGTRTASITGAFVALVDALNRLKE--QGQIDRIPVSDFVAATSVGRLNGRIYLDLCYEE 180
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
DS +VD N VMT SG VEVQG+ E A+F++ +M+ LA I+ LI QK+
Sbjct: 181 DSAAEVDMNIVMTGSGRFVEVQGTGEEASFTRQEMDSMIELAAQGISRLILHQKE 235
>gi|237785978|ref|YP_002906683.1| ribonuclease PH [Corynebacterium kroppenstedtii DSM 44385]
gi|259494118|sp|C4LJY5|RNPH_CORK4 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|237758890|gb|ACR18140.1| ribonuclease PH [Corynebacterium kroppenstedtii DSM 44385]
Length = 254
Score = 181 bits (458), Expect = 9e-44, Method: Composition-based stats.
Identities = 105/240 (43%), Positives = 161/240 (67%), Gaps = 2/240 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+R GR ++MR + + R + GS LV+FG+T ++ TA++E++VP + +++ GW+T
Sbjct: 5 VRADGRALDEMRPVRIVRGFTTNPAGSVLVEFGNTRVMCTASVEDRVPRFKKDSGEGWLT 64
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEY MLP +T R+ RE++ G+ GR+ EI R++GR+LR+ +DL ALG I +DCDV+Q
Sbjct: 65 AEYSMLPSATAERMPRESMRGKVKGRTHEISRLVGRSLRAAIDLKALGENTIALDCDVLQ 124
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+ITGA+VAL D L ++E L VAA+S G++ G+ +DL Y
Sbjct: 125 ADGGTRTASITGAYVALADALTYLEAE--GLVSQNALLPPVAAVSVGLIDGHVCLDLPYE 182
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
EDS +VD N VMT+SG VE+QG+ E +TFS++ ++ A+ ++LI+ QK+ +S
Sbjct: 183 EDSRAEVDMNVVMTESGEFVEIQGTGEHSTFSREQLMQFMDAAEKGCSELIRAQKEALSK 242
>gi|91791686|ref|YP_561337.1| ribonuclease PH [Shewanella denitrificans OS217]
gi|123357198|sp|Q12SG2|RNPH_SHEDO RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|91713688|gb|ABE53614.1| RNAse PH [Shewanella denitrificans OS217]
Length = 237
Score = 181 bits (458), Expect = 9e-44, Method: Composition-based stats.
Identities = 122/239 (51%), Positives = 163/239 (68%), Gaps = 2/239 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR S R Q R I++TR + +AEGS LV+FG+T +L TA+ E VP +++ GW+T
Sbjct: 1 MRPSKRTPAQTRPITITRNFTAHAEGSVLVEFGETKVLCTASFTEGVPRFLKGQGQGWVT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPRST +R+ REA G+Q GR+QEIQR+IGR+LR+ VD+ ALG I+IDCDVIQ
Sbjct: 61 AEYGMLPRSTHSRMDREAARGKQSGRTQEIQRLIGRSLRAAVDMKALGENTIVIDCDVIQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTAAITGA VA+ D L + S LK +AA+S G+ G I DL+Y
Sbjct: 121 ADGGTRTAAITGACVAMVDALNWARAKN--IIKSNPLKFLIAAVSVGIYKGEAISDLEYL 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
EDS + D N VMT++G I+EVQG+AE FS + +L LAK+ I +++ +QK ++
Sbjct: 179 EDSAAETDMNVVMTETGKIIEVQGTAEGEPFSHEELNELLGLAKNSIREIVDVQKSALN 237
>gi|224824865|ref|ZP_03697972.1| ribonuclease PH [Lutiella nitroferrum 2002]
gi|224603358|gb|EEG09534.1| ribonuclease PH [Lutiella nitroferrum 2002]
Length = 238
Score = 181 bits (458), Expect = 9e-44, Method: Composition-based stats.
Identities = 130/239 (54%), Positives = 174/239 (72%), Gaps = 2/239 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR S R + +R ++LTR +K+AEGS LV+FGDT ++ TA+++E VP +++ GW+T
Sbjct: 1 MRPSSRPNDALRRVTLTRGYTKHAEGSVLVEFGDTKVICTASVDESVPGFLKGKGQGWVT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPRSTG+R++REA SG+Q GR+QEIQR+IGR+LR+VVDL LG RQI IDCDVIQ
Sbjct: 61 AEYGMLPRSTGSRMRREAASGKQSGRTQEIQRLIGRSLRAVVDLGKLGERQIQIDCDVIQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+ITGA+VALHD + + + ++ VAA+S G+ G P++DLDY
Sbjct: 121 ADGGTRTASITGAFVALHDAISGLIAQGKLQES--PIRDFVAAVSVGVFEGRPVLDLDYL 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
EDS + D N VMT SGH VEVQG+AE FS+ AML LA+ + +LI +QK ++
Sbjct: 179 EDSACETDMNVVMTGSGHFVEVQGTAEGVPFSRAELDAMLRLAEQGVGELIAIQKAALA 237
>gi|311693191|gb|ADP96064.1| ribonuclease PH [marine bacterium HP15]
Length = 238
Score = 181 bits (458), Expect = 1e-43, Method: Composition-based stats.
Identities = 131/239 (54%), Positives = 166/239 (69%), Gaps = 2/239 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR SGR Q R++ +TR +++AEGS LV+FGDT ++ TA++E KVP ++R GWIT
Sbjct: 1 MRPSGRTPEQPRDVRITRNYTRHAEGSVLVEFGDTKVICTASVENKVPPFLRGEGKGWIT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPRSTG+R+ REA G+QGGR+ EIQR+IGR+LR+ VDL+ALG I IDCDVIQ
Sbjct: 61 AEYGMLPRSTGSRMGREAARGKQGGRTVEIQRLIGRSLRAAVDLTALGEHSITIDCDVIQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTAAITG VAL D L H+ + LK VAA+S G+ G P+VDLDY
Sbjct: 121 ADGGTRTAAITGGCVALVDALNHLVADKRLKKS--PLKQMVAALSVGVYKGTPVVDLDYP 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
EDS + D N +MTD G +E+QG+AE A F Q +ML LAK I L ++QK +
Sbjct: 179 EDSEAETDMNVIMTDQGGFIEIQGTAEGAPFDQSELDSMLTLAKQGIEQLFEIQKAALE 237
>gi|329901883|ref|ZP_08272970.1| Ribonuclease PH [Oxalobacteraceae bacterium IMCC9480]
gi|327548975|gb|EGF33592.1| Ribonuclease PH [Oxalobacteraceae bacterium IMCC9480]
Length = 244
Score = 181 bits (458), Expect = 1e-43, Method: Composition-based stats.
Identities = 128/239 (53%), Positives = 167/239 (69%), Gaps = 2/239 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+R SGR + +R + LTR +K+AEGS L++FGDT ++ TA++E+KVP +++ GW+T
Sbjct: 5 LRPSGRTADALRPVRLTRHYTKHAEGSVLIEFGDTKVICTASIEDKVPGFLKGKGQGWMT 64
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPRST R+ REA G+Q GR+QEIQR+IGR+LR+ DLSA G R + +DCDVIQ
Sbjct: 65 AEYGMLPRSTHTRMAREAAKGKQSGRTQEIQRLIGRSLRAAFDLSAFGERTLHLDCDVIQ 124
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+ITGA VA HD + D + LK VAAIS G+ G P++DLDY
Sbjct: 125 ADGGTRTASITGAMVAAHDAFSKLVDT--GVLSAMPLKHFVAAISVGVFQGTPVLDLDYD 182
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
EDST D D N VMTD+GH +EVQG+AE A F + +L+LA I DLI LQ+ +
Sbjct: 183 EDSTCDTDMNVVMTDAGHFIEVQGTAEGAAFDRATMNQLLDLADGGIRDLIALQRRELG 241
>gi|85714061|ref|ZP_01045050.1| ribonuclease PH [Nitrobacter sp. Nb-311A]
gi|85699187|gb|EAQ37055.1| ribonuclease PH [Nitrobacter sp. Nb-311A]
Length = 237
Score = 181 bits (458), Expect = 1e-43, Method: Composition-based stats.
Identities = 141/239 (58%), Positives = 179/239 (74%), Gaps = 2/239 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR S R +++R +SL R V KYAEGSC+VKFGDTH+L TATLEE++P W++ GW+T
Sbjct: 1 MRPSRRAPDELRAVSLERGVVKYAEGSCMVKFGDTHVLVTATLEERLPPWLKGQGRGWVT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPR+T R +REA +G+QGGR+ EIQR+IGR+LR+ +DL ALG RQI +DCDVIQ
Sbjct: 61 AEYGMLPRATLERTRREASAGKQGGRTVEIQRLIGRSLRAAIDLEALGERQITVDCDVIQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+ITGAWVAL DC+ M+ +G+VAAISCG+ G P++DLDY
Sbjct: 121 ADGGTRTASITGAWVALADCVNWMKARDMLKASVL--RGNVAAISCGIYNGTPVLDLDYA 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
EDS D DANFVMT G I+EVQG+AE+ FS D F A++ LAK +A L+ LQK ++
Sbjct: 179 EDSEADTDANFVMTGEGRIIEVQGTAEKVPFSDDEFLALMALAKKGVARLVDLQKMAVA 237
>gi|254482749|ref|ZP_05095987.1| ribonuclease PH [marine gamma proteobacterium HTCC2148]
gi|214037108|gb|EEB77777.1| ribonuclease PH [marine gamma proteobacterium HTCC2148]
Length = 240
Score = 181 bits (458), Expect = 1e-43, Method: Composition-based stats.
Identities = 127/239 (53%), Positives = 169/239 (70%), Gaps = 2/239 (0%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R SGR Q+R+IS+TR + +AEGS LV FG T ++ TA++EE VP ++R GW+TA
Sbjct: 3 RPSGRTPEQLRDISITRNFTCHAEGSVLVSFGKTKVICTASVEEGVPRFLRGKGSGWVTA 62
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
EYGMLPRSTG+R+ REA G+QGGR+ EIQR+IGR+LR+ VDL LG I IDCDVIQA
Sbjct: 63 EYGMLPRSTGSRMGREASRGKQGGRTVEIQRLIGRSLRAAVDLKKLGENTINIDCDVIQA 122
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
DGGTRTA+ITGA VAL D + +++ K + L +A++S G+ G P++DLDY E
Sbjct: 123 DGGTRTASITGALVALVDAINYLQRK--KIINTDPLLEMMASVSVGIYQGVPVLDLDYPE 180
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
DS D D N +M +SG +EVQG+AE ATF++D AML+LA I +LI+ QK ++
Sbjct: 181 DSAADTDMNVIMGESGGFIEVQGTAEGATFARDELNAMLDLASAGILELIEKQKAALAE 239
>gi|75674392|ref|YP_316813.1| ribonuclease PH [Nitrobacter winogradskyi Nb-255]
gi|123614308|sp|Q3SW80|RNPH_NITWN RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|74419262|gb|ABA03461.1| RNAse PH [Nitrobacter winogradskyi Nb-255]
Length = 237
Score = 181 bits (458), Expect = 1e-43, Method: Composition-based stats.
Identities = 144/239 (60%), Positives = 180/239 (75%), Gaps = 2/239 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR S R +++R +SL R V KYAEGSCLVKFGDTH+L TATLEE++P W++ GW+T
Sbjct: 1 MRPSRRAPDELRAVSLERGVVKYAEGSCLVKFGDTHVLVTATLEERLPPWLKGQGRGWVT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPR+T R +REA +G+QGGR+ EIQR+IGR+LR+ VDL ALG RQI IDCDVIQ
Sbjct: 61 AEYGMLPRATLERTRREASAGKQGGRTVEIQRLIGRSLRAAVDLEALGERQITIDCDVIQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+ITGAWVAL DC+ M+ + +G+VAAISCG+ G P++DLDY
Sbjct: 121 ADGGTRTASITGAWVALADCVNWMKARNMLKAGVL--RGNVAAISCGIYNGTPVLDLDYA 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
EDS D DANFVMT G I+EVQG+AE+ FS D F A++ LAK +A L+ LQK ++
Sbjct: 179 EDSEADTDANFVMTGEGRIIEVQGTAEKVPFSDDEFLALMALAKKGVARLVDLQKMAVA 237
>gi|21232680|ref|NP_638597.1| ribonuclease PH [Xanthomonas campestris pv. campestris str. ATCC
33913]
gi|66767292|ref|YP_242054.1| ribonuclease PH [Xanthomonas campestris pv. campestris str. 8004]
gi|188990329|ref|YP_001902339.1| ribonuclease PH [Xanthomonas campestris pv. campestris str. B100]
gi|24638173|sp|Q8P5T5|RNPH_XANCP RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|81306727|sp|Q4UY39|RNPH_XANC8 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|226736950|sp|B0RP96|RNPH_XANCB RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|21114489|gb|AAM42521.1| ribonuclease PH [Xanthomonas campestris pv. campestris str. ATCC
33913]
gi|66572624|gb|AAY48034.1| ribonuclease PH [Xanthomonas campestris pv. campestris str. 8004]
gi|167732089|emb|CAP50281.1| ribonuclease PH [Xanthomonas campestris pv. campestris]
Length = 241
Score = 181 bits (458), Expect = 1e-43, Method: Composition-based stats.
Identities = 122/238 (51%), Positives = 162/238 (68%), Gaps = 2/238 (0%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R SGR +Q+R + + R +++AEGS LV FGDT +L TA++E +VP ++R GW+TA
Sbjct: 5 RPSGRTADQLRPVRIERAFTRHAEGSVLVSFGDTRVLCTASVENRVPNFLRGKGEGWVTA 64
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
EYGMLPRST R REA G+QGGR+ EIQR+IGRALR+ VD +ALG R I +DCDV+QA
Sbjct: 65 EYGMLPRSTHTRSDREAARGKQGGRTLEIQRLIGRALRACVDRNALGERTITLDCDVLQA 124
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
DGGTRTAAITGA+VAL D + + L G VAA+S G+ G P++DLDY E
Sbjct: 125 DGGTRTAAITGAYVALADAVNLLLKR--GDIKKHPLIGAVAAVSVGIYRGEPVLDLDYPE 182
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
DS D D N VM D G +E+QG+AE F +D A+L LA+ + +L +LQ+ ++
Sbjct: 183 DSDCDTDMNVVMNDGGGFIELQGTAEGHAFRRDELNALLALAEKGVGELFELQRAALA 240
>gi|88861108|ref|ZP_01135742.1| RNase PH (tRNA nucleotidyltransferase) [Pseudoalteromonas tunicata
D2]
gi|88816830|gb|EAR26651.1| RNase PH (tRNA nucleotidyltransferase) [Pseudoalteromonas tunicata
D2]
Length = 237
Score = 180 bits (457), Expect = 1e-43, Method: Composition-based stats.
Identities = 124/239 (51%), Positives = 161/239 (67%), Gaps = 2/239 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR S R NQ+R ++ TR + +AEGS LV+FG+T +L TAT+E VP +++ GWIT
Sbjct: 1 MRPSERTLNQIRPVTFTRNYTLHAEGSVLVEFGNTKVLCTATVEAGVPRFMKGQGKGWIT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPRST R REA G+Q GR+ EIQR+I R+LR+ VDL ALG I IDCDVIQ
Sbjct: 61 AEYGMLPRSTHTRCDREAARGKQSGRTMEIQRLIARSLRAAVDLKALGENTITIDCDVIQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+I+GA VAL D L HM + LK +AAIS G+ G PI DL+Y
Sbjct: 121 ADGGTRTASISGACVALVDALTHMRAK--GMINTNPLKYMIAAISVGIYKGEPITDLEYV 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
EDS + D N +MT++G ++EVQG+AE FS + +L LAK I ++I +QK ++
Sbjct: 179 EDSAAETDMNVIMTETGKLIEVQGTAEAEPFSFEELDQLLTLAKHSIREIIDIQKQTLA 237
>gi|262374498|ref|ZP_06067772.1| ribonuclease PH [Acinetobacter junii SH205]
gi|262310494|gb|EEY91584.1| ribonuclease PH [Acinetobacter junii SH205]
Length = 238
Score = 180 bits (457), Expect = 1e-43, Method: Composition-based stats.
Identities = 123/239 (51%), Positives = 161/239 (67%), Gaps = 2/239 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR+ R +Q+R++ +TR ++YAEGS LV+FG T +L TA+++ VP +++ GW+T
Sbjct: 1 MRIDQRALDQLRDVKITRNYTRYAEGSVLVEFGHTKVLCTASIDNSVPRFLKGQGQGWVT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPRST R REA G+Q GR+QEIQR+IGR+LR++VDL LG I IDCDVIQ
Sbjct: 61 AEYGMLPRSTHTRSDREAARGKQTGRTQEIQRLIGRSLRAMVDLKKLGENTITIDCDVIQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTAAITGA VAL D + SNK LKG VAAIS GM ++DL Y
Sbjct: 121 ADGGTRTAAITGAAVALVDAMN--VLLSNKKIKHDPLKGLVAAISVGMYQDEVLLDLCYE 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
EDS D N VMT +G +E+QG+AE F++ AML LA+ I++LI+ Q+ +
Sbjct: 179 EDSNCQTDLNVVMTQAGEFIEIQGTAEDKPFTRQQCNAMLELAEKGISELIQKQQQALG 237
>gi|86747551|ref|YP_484047.1| ribonuclease PH [Rhodopseudomonas palustris HaA2]
gi|123099251|sp|Q2J324|RNPH_RHOP2 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|86570579|gb|ABD05136.1| RNAse PH [Rhodopseudomonas palustris HaA2]
Length = 237
Score = 180 bits (457), Expect = 1e-43, Method: Composition-based stats.
Identities = 143/239 (59%), Positives = 183/239 (76%), Gaps = 2/239 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR S R +++R +SL R V KYAEGSCLVKFGDTH+L TATLEE++P W++ GW+T
Sbjct: 1 MRPSRRAPDELRAVSLERGVVKYAEGSCLVKFGDTHVLVTATLEERLPPWLKGQGRGWVT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPR+T R +REA +G+Q GR+ EIQR+IGR+LR++VDL ALG RQI +DCDV+Q
Sbjct: 61 AEYGMLPRATLERTRREAAAGKQNGRTVEIQRLIGRSLRTIVDLQALGERQITVDCDVLQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+ITGAWVAL DCL M+ + QV++ +VAAISCG+ G P++DLDY
Sbjct: 121 ADGGTRTASITGAWVALADCLAWMKTRNM--LKGQVMRDNVAAISCGIYNGTPVLDLDYA 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
EDS + DANFVMT G IVEVQG+AE+ FSQD F A++ LA+ +A L+ LQK ++
Sbjct: 179 EDSEAETDANFVMTGDGRIVEVQGTAEKTPFSQDEFLALMALAQKGVARLVDLQKMAVA 237
>gi|182677771|ref|YP_001831917.1| ribonuclease PH [Beijerinckia indica subsp. indica ATCC 9039]
gi|226736889|sp|B2IH14|RNPH_BEII9 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|182633654|gb|ACB94428.1| ribonuclease PH [Beijerinckia indica subsp. indica ATCC 9039]
Length = 237
Score = 180 bits (457), Expect = 1e-43, Method: Composition-based stats.
Identities = 137/239 (57%), Positives = 170/239 (71%), Gaps = 2/239 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR S R +R ++L R V++YAEGSCLVKFG TH+L TA+LE+K P W+R GW+T
Sbjct: 1 MRPSKRAAQDLRPVTLERNVARYAEGSCLVKFGGTHVLCTASLEDKPPPWLRGQGRGWVT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEY MLPR+T R +RE++SG+ GR+QEIQR+IGR+LR+V +L ALG RQI +DCDV+Q
Sbjct: 61 AEYAMLPRATHTRTRRESMSGKPSGRTQEIQRLIGRSLRAVTNLPALGERQITLDCDVLQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTAAITGAWVALHDC + M L+ HVAA+SCG+ G ++DLDY
Sbjct: 121 ADGGTRTAAITGAWVALHDCCKWMH--GRSIIKEFPLREHVAAVSCGIYQGEAVLDLDYE 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
EDS DANFVMT G +VEVQ SAE A FS+D +L LAK IA L+ +QK I
Sbjct: 179 EDSVAQTDANFVMTGGGALVEVQASAEGAVFSEDELSVLLALAKGGIAQLVNIQKLAIG 237
>gi|212638433|ref|YP_002314953.1| ribonuclease PH [Anoxybacillus flavithermus WK1]
gi|226736883|sp|B7GH12|RNPH_ANOFW RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|212559913|gb|ACJ32968.1| Ribonuclease PH [Anoxybacillus flavithermus WK1]
Length = 255
Score = 180 bits (457), Expect = 1e-43, Method: Composition-based stats.
Identities = 112/240 (46%), Positives = 150/240 (62%), Gaps = 1/240 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR+ GR +++R + + K+ EGS L+ GDT ++ TA++E+KVP ++R GWIT
Sbjct: 1 MRVDGRTNDELRPVHIEPNYLKHPEGSVLISIGDTKVICTASIEDKVPPFMRGGGKGWIT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEY M+PR+T R REA G+ GR+ EIQR+IGRALRSVVDL LG + I IDCDVIQ
Sbjct: 61 AEYAMIPRATEQRNIREASKGKLSGRTMEIQRLIGRALRSVVDLQKLGEKTIWIDCDVIQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+ITGA+VA+ L M + K + A I+DL+Y
Sbjct: 121 ADGGTRTASITGAFVAMTLALGKMVEEK-KLPALPITDFLAATSVGIDGEHGIILDLNYI 179
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
EDS VD N VMT SG VE+QG+ E ATFS + +L +A+ I +LI QK+ + +
Sbjct: 180 EDSKAQVDMNIVMTGSGRFVEIQGTGEEATFSYEQLLDLLTVAEKGIHELIARQKEALGS 239
>gi|239994379|ref|ZP_04714903.1| RNase PH (tRNA nucleotidyltransferase) [Alteromonas macleodii ATCC
27126]
Length = 237
Score = 180 bits (457), Expect = 1e-43, Method: Composition-based stats.
Identities = 119/239 (49%), Positives = 161/239 (67%), Gaps = 2/239 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR SGR +Q+R +++TR+ + +AEGS LV+FG+T +L AT+EE VP +++ GWIT
Sbjct: 1 MRPSGRTASQIRPVTITRQYTCHAEGSVLVEFGNTKVLCNATVEEGVPRFMKGQGKGWIT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEY MLPR+T R REA G+QGGR+ EIQR+I R+LR+ VDL LG I +DCDVIQ
Sbjct: 61 AEYSMLPRATHTRSGREAARGKQGGRTLEIQRLIARSLRAAVDLKLLGENTITLDCDVIQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+ITGA VAL D L +M + LK +AA+S G+ G PI DL+Y
Sbjct: 121 ADGGTRTASITGACVALVDALTYMRAK--GIIKTNPLKHMIAALSVGIYEGTPIADLEYT 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
EDS + D N VMT++G ++EVQG+AE FS + ML + K + +L +QK ++
Sbjct: 179 EDSEAETDMNIVMTETGKLIEVQGTAEGEPFSFEELDEMLKIGKHGLRELFDIQKAALA 237
>gi|297537277|ref|YP_003673046.1| ribonuclease PH [Methylotenera sp. 301]
gi|297256624|gb|ADI28469.1| ribonuclease PH [Methylotenera sp. 301]
Length = 243
Score = 180 bits (457), Expect = 1e-43, Method: Composition-based stats.
Identities = 132/238 (55%), Positives = 168/238 (70%), Gaps = 2/238 (0%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R S R NQ+R + + R +K+AEGS LVKFGDTH+L TA++EEKVP +++ GW+TA
Sbjct: 7 RPSQRANNQLRNVEIIRHYTKHAEGSVLVKFGDTHVLCTASVEEKVPGFLKGKGQGWVTA 66
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
EYGMLPRSTG+R+ REA G+Q GR+QEIQR+IGR+LR+++DL LG R I +DCDVIQA
Sbjct: 67 EYGMLPRSTGSRMDREAAKGKQSGRTQEIQRLIGRSLRAIIDLEKLGERSIHMDCDVIQA 126
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
DGGTRTA+ITGA+VALHD + + LK VAAIS G+ G P++DLDY E
Sbjct: 127 DGGTRTASITGAYVALHDAISTLLKNGKLTTS--PLKQGVAAISVGVYKGTPVLDLDYIE 184
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
DS D D N VMT G VE+QG+AE FS+D AML+LA I L+ Q +V+S
Sbjct: 185 DSDCDTDMNVVMTADGGFVEIQGTAEGEPFSRDAMNAMLDLAAHGIKQLVIKQNEVLS 242
>gi|294667389|ref|ZP_06732607.1| ribonuclease PH [Xanthomonas fuscans subsp. aurantifolii str. ICPB
10535]
gi|292602830|gb|EFF46263.1| ribonuclease PH [Xanthomonas fuscans subsp. aurantifolii str. ICPB
10535]
Length = 241
Score = 180 bits (457), Expect = 1e-43, Method: Composition-based stats.
Identities = 122/238 (51%), Positives = 161/238 (67%), Gaps = 2/238 (0%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R SGR +Q+R + + R +++AEGS LV FGDT +L TA++E +VP ++R GW+TA
Sbjct: 5 RPSGRTADQLRPVRIERAFTRHAEGSVLVSFGDTRVLCTASVENRVPGFLRGKGEGWVTA 64
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
EYGMLPRST R REA G+QGGR+ EIQR+IGRALR+ VD +ALG R I +DCDV+QA
Sbjct: 65 EYGMLPRSTHTRSDREAARGKQGGRTLEIQRLIGRALRACVDRNALGERTITLDCDVLQA 124
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
DGGTRTAAITGA+VAL D + + L G VAA+S G+ G P++DLDY E
Sbjct: 125 DGGTRTAAITGAYVALADAVNLLLKR--GDIKKHPLIGAVAAVSVGIYRGEPVLDLDYPE 182
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
DS D D N VM D G +E+QG+AE F +D A+L LA+ + +L LQ+ ++
Sbjct: 183 DSDCDTDMNVVMNDDGGFIELQGTAEGHAFRRDELNALLALAEKGMGELFALQRAALA 240
>gi|302534682|ref|ZP_07287024.1| ribonuclease PH [Streptomyces sp. C]
gi|302443577|gb|EFL15393.1| ribonuclease PH [Streptomyces sp. C]
Length = 244
Score = 180 bits (457), Expect = 1e-43, Method: Composition-based stats.
Identities = 114/237 (48%), Positives = 152/237 (64%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R+ GR Q+R +++ R SK+AEGS L+ FGDT + TA+ E VP W + + GW+T+
Sbjct: 3 RIDGRTPEQLRPVTIERGWSKHAEGSVLISFGDTKVFCTASFTEGVPRWRKGSGEGWVTS 62
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
EY MLPRST R RE+V G+ GGR+ EI R+IGR+LR+V+D ALG I++DCDV+QA
Sbjct: 63 EYSMLPRSTNTRGDRESVRGKIGGRTHEISRLIGRSLRAVIDYKALGENTIVLDCDVLQA 122
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
DGGTRTAAITGA+VAL D + + + L G VAA+S G++ G P++DL Y E
Sbjct: 123 DGGTRTAAITGAYVALADAIAWGQGKKLIKAGRKPLTGTVAAVSVGIVDGVPLLDLCYEE 182
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
D + D N V T G VEVQG+AE F + A+L+LA ADL LQ +
Sbjct: 183 DVRAETDMNVVCTGDGRFVEVQGTAEGEPFDRKELNALLDLAAGGCADLEALQLGAL 239
>gi|289209634|ref|YP_003461700.1| ribonuclease PH [Thioalkalivibrio sp. K90mix]
gi|288945265|gb|ADC72964.1| ribonuclease PH [Thioalkalivibrio sp. K90mix]
Length = 242
Score = 180 bits (457), Expect = 1e-43, Method: Composition-based stats.
Identities = 123/240 (51%), Positives = 169/240 (70%), Gaps = 2/240 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR SGRQ ++MR + TR +++AEGS LV+FGDT +L AT+E +VP W++N GW+T
Sbjct: 1 MRPSGRQADEMRPVRFTRHFTRHAEGSVLVEFGDTRVLCNATIESRVPPWLKNKGRGWVT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEY MLPRST +R+ REA G+ GGR+ EIQR+IGR+LR+VVDL ALG RQII+DCDVIQ
Sbjct: 61 AEYSMLPRSTHDRMAREAARGKLGGRTMEIQRLIGRSLRAVVDLEALGERQIIVDCDVIQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+I+GA+VAL D ++ L GH+AAIS G+ G P++DLDY
Sbjct: 121 ADGGTRTASISGAYVALRDAIRK--AREQGMIRKDPLHGHLAAISVGIFNGAPVLDLDYD 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
EDS + D N VM ++G ++E+QG+AE F +D ML+L + I +++ Q+ ++
Sbjct: 179 EDSQAETDLNLVMNEAGGVIEIQGTAEGHAFRRDELNQMLDLGEKGIQQIVEAQRAALAK 238
>gi|316931691|ref|YP_004106673.1| ribonuclease PH [Rhodopseudomonas palustris DX-1]
gi|315599405|gb|ADU41940.1| ribonuclease PH [Rhodopseudomonas palustris DX-1]
Length = 237
Score = 180 bits (457), Expect = 1e-43, Method: Composition-based stats.
Identities = 143/239 (59%), Positives = 182/239 (76%), Gaps = 2/239 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR S R +++R +SL R V KYAEGSCLVKFGDTH+L TATLEE++P W++ GW+T
Sbjct: 1 MRPSRRAPDELRAVSLERGVVKYAEGSCLVKFGDTHVLVTATLEERLPPWLKGQGRGWVT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPR+T R +REA +G+Q GR+ EIQR+IGR+LR++VDL ALG RQI +DCDV+Q
Sbjct: 61 AEYGMLPRATLERTRREASAGKQNGRTVEIQRLIGRSLRTIVDLEALGERQITVDCDVLQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+ITGAWVAL DCL M+ + +QVL+ +VAAISCG+ G P++DLDY
Sbjct: 121 ADGGTRTASITGAWVALADCLNWMKARNM--IKTQVLRDNVAAISCGIYNGTPVLDLDYA 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
EDS + DANFVMT G +VEVQG+AER FSQD F ++ LA+ +A L+ LQK +
Sbjct: 179 EDSEAETDANFVMTGDGRLVEVQGTAERTPFSQDEFLQLMALAQKGVARLVDLQKMAVG 237
>gi|323497057|ref|ZP_08102080.1| ribonuclease PH [Vibrio sinaloensis DSM 21326]
gi|323317901|gb|EGA70889.1| ribonuclease PH [Vibrio sinaloensis DSM 21326]
Length = 238
Score = 180 bits (457), Expect = 1e-43, Method: Composition-based stats.
Identities = 120/240 (50%), Positives = 166/240 (69%), Gaps = 2/240 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR + R+ +Q+R I +TR + YAEGS LV+FG+T +L AT+EE VP W++ GW+T
Sbjct: 1 MRPNDRKADQVRPIKITRNYTAYAEGSVLVEFGNTKVLCNATVEENVPRWLKGQGKGWVT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPRST +R++REA SG+QGGR+ EIQR+I R+LR+VVDL A+G + +DCDVIQ
Sbjct: 61 AEYGMLPRSTHSRMRREAASGKQGGRTMEIQRLIARSLRAVVDLEAMGEIMVTVDCDVIQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+I+GA VA+ D QH+ + + +KGHVAA+S G+L + DL+Y
Sbjct: 121 ADGGTRTASISGASVAMADAFQHLVEK--GKLKANPMKGHVAAVSVGILGEDILCDLEYT 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
EDS D D N VMT+ G ++EVQG+AE F+ +L A I++++ QK + N
Sbjct: 179 EDSAADTDMNVVMTEDGRMIEVQGTAEGEPFTHAELMKLLESATKGISEIVAAQKAALEN 238
>gi|254226345|ref|ZP_04919935.1| ribonuclease PH [Vibrio cholerae V51]
gi|125621150|gb|EAZ49494.1| ribonuclease PH [Vibrio cholerae V51]
Length = 257
Score = 180 bits (457), Expect = 1e-43, Method: Composition-based stats.
Identities = 121/238 (50%), Positives = 163/238 (68%), Gaps = 2/238 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR R +Q+R I +TR + YAEGS LV+FG+T +L A++EE VP W++ GW+T
Sbjct: 20 MRQDNRAADQVRPIKITRHYTAYAEGSVLVEFGNTKVLCNASIEEGVPRWLKGQGKGWVT 79
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPR+T +R +REA +G+QGGR+ EIQR+I R+LR+VVDL A+G I +DCDVIQ
Sbjct: 80 AEYGMLPRATHSRTRREATNGKQGGRTMEIQRLIARSLRAVVDLEAMGEIMITVDCDVIQ 139
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+ITGA VAL D H+ +KGHVAA+S G+L + DL+Y
Sbjct: 140 ADGGTRTASITGASVALADAFAHLIAK--GQLKKNPMKGHVAAVSVGILGEDVLCDLEYV 197
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
EDS D D N VMT+ G ++E+QG+AE FS + +L +AK IAD++ +QK +
Sbjct: 198 EDSAADTDMNVVMTEEGKMIEIQGTAEGEPFSHEQLLELLAVAKKGIADIVAVQKASL 255
>gi|255320662|ref|ZP_05361839.1| ribonuclease PH [Acinetobacter radioresistens SK82]
gi|262380705|ref|ZP_06073858.1| ribonuclease PH [Acinetobacter radioresistens SH164]
gi|255302278|gb|EET81518.1| ribonuclease PH [Acinetobacter radioresistens SK82]
gi|262297653|gb|EEY85569.1| ribonuclease PH [Acinetobacter radioresistens SH164]
Length = 238
Score = 180 bits (457), Expect = 1e-43, Method: Composition-based stats.
Identities = 123/239 (51%), Positives = 160/239 (66%), Gaps = 2/239 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR+ R NQ+R++ +TR ++YAEGS LV+FG T +L TA+++ VP +++ GW+T
Sbjct: 1 MRIDQRALNQLRDVKITRNYTRYAEGSVLVEFGHTKVLCTASIDNSVPRFLKGQGQGWVT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPRST R REA G+Q GR+QEIQR+IGR+LR++VDL LG I IDCDVIQ
Sbjct: 61 AEYGMLPRSTHTRSDREAARGKQSGRTQEIQRLIGRSLRAMVDLKKLGENTITIDCDVIQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTAAITGA VAL D + K LKG VAAIS GM ++DL Y
Sbjct: 121 ADGGTRTAAITGAAVALVDAMN--VLLERKKIKHDPLKGLVAAISVGMYQDEVLLDLCYE 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
EDS D N VMT +G +E+QG+AE F++ AML LA+ I++LIK Q++ +
Sbjct: 179 EDSNCQTDLNVVMTQAGEFIEIQGTAEDKPFTRAQCNAMLELAEQGISELIKKQQEALG 237
>gi|329896532|ref|ZP_08271590.1| Ribonuclease PH [gamma proteobacterium IMCC3088]
gi|328921749|gb|EGG29122.1| Ribonuclease PH [gamma proteobacterium IMCC3088]
Length = 240
Score = 180 bits (457), Expect = 1e-43, Method: Composition-based stats.
Identities = 125/239 (52%), Positives = 169/239 (70%), Gaps = 2/239 (0%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R SGRQ +++REI+++R + +AEGS LV+FG T +L A++ E VP ++R + GWITA
Sbjct: 3 RPSGRQPHELREITISRNYTCHAEGSVLVEFGRTKVLCNASVSEGVPRFLRGSGQGWITA 62
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
EYGMLPRSTG+R+ REA G+QGGR+ EIQR+IGR+LR+VVDL LG I +DCDVIQA
Sbjct: 63 EYGMLPRSTGSRMDREAARGKQGGRTLEIQRLIGRSLRAVVDLKRLGEYTITVDCDVIQA 122
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
DGGTRTA+ITGA VAL D L ++ K + L VA++S G+ G P++DLDY E
Sbjct: 123 DGGTRTASITGACVALVDALNGLQRD--KALKTDPLNQLVASVSVGVYQGVPVLDLDYPE 180
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
DS+ D D N VM + G ++EVQG+AE ATF + ML+LA+ I DL + Q+ ++
Sbjct: 181 DSSADTDMNVVMGEDGGLIEVQGTAEGATFDRATLNQMLDLAEAGIRDLFEAQRKALAQ 239
>gi|271498722|ref|YP_003331747.1| ribonuclease PH [Dickeya dadantii Ech586]
gi|270342277|gb|ACZ75042.1| ribonuclease PH [Dickeya dadantii Ech586]
Length = 238
Score = 180 bits (457), Expect = 1e-43, Method: Composition-based stats.
Identities = 123/240 (51%), Positives = 164/240 (68%), Gaps = 2/240 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR +GR Q+R ++ TR +K+AEGS LV+FGDT +L AT+EE VP +++ GWIT
Sbjct: 1 MRPTGRSAQQIRPLTFTRHYTKHAEGSVLVEFGDTKVLCNATVEEGVPRFLKGQGQGWIT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPRST +R REA G+QGGR+ EIQR+I R+LR+ VDL+ LG I +DCDV+Q
Sbjct: 61 AEYGMLPRSTHSRNAREAAKGKQGGRTLEIQRLIARSLRAAVDLNKLGEFTITLDCDVLQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+ITGA VAL D L M LKG VAA+S G++ G + DL+Y
Sbjct: 121 ADGGTRTASITGACVALADALNGMVASGKLKAS--PLKGMVAAVSVGIVNGEAVCDLEYV 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
EDS + D N VMT+ G ++EVQG+AE FS D ++L LA+ I D+++ QK +++
Sbjct: 179 EDSAAETDMNVVMTEDGRMIEVQGTAEGEPFSHDELLSLLALARQGIEDIVRAQKATLAD 238
>gi|21244122|ref|NP_643704.1| ribonuclease PH [Xanthomonas axonopodis pv. citri str. 306]
gi|24638175|sp|Q8PH63|RNPH_XANAC RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|21109751|gb|AAM38240.1| ribonuclease PH [Xanthomonas axonopodis pv. citri str. 306]
Length = 241
Score = 180 bits (457), Expect = 1e-43, Method: Composition-based stats.
Identities = 122/238 (51%), Positives = 161/238 (67%), Gaps = 2/238 (0%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R SGR +Q+R + + R +++AEGS LV FGDT +L TA++E +VP ++R GW+TA
Sbjct: 5 RPSGRTADQLRPVRIERSFTRHAEGSVLVSFGDTRVLCTASVENRVPGFLRGKGEGWVTA 64
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
EYGMLPRST R REA G+QGGR+ EIQR+IGRALR+ VD +ALG R I +DCDV+QA
Sbjct: 65 EYGMLPRSTHTRSDREAARGKQGGRTLEIQRLIGRALRACVDRNALGERTITLDCDVLQA 124
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
DGGTRTAAITGA+VAL D + + L G VAA+S G+ G P++DLDY E
Sbjct: 125 DGGTRTAAITGAYVALADAVNLLIKR--GDIKKHPLIGAVAAVSVGIYRGEPVLDLDYPE 182
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
DS D D N VM D G +E+QG+AE F +D A+L LA+ + +L LQ+ ++
Sbjct: 183 DSDCDTDMNVVMNDGGGFIELQGTAEGHAFRRDELNALLALAEKGMGELFALQRAALA 240
>gi|85706900|ref|ZP_01037990.1| ribonuclease PH [Roseovarius sp. 217]
gi|85668511|gb|EAQ23382.1| ribonuclease PH [Roseovarius sp. 217]
Length = 238
Score = 180 bits (457), Expect = 1e-43, Method: Composition-based stats.
Identities = 125/237 (52%), Positives = 171/237 (72%), Gaps = 2/237 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR SGR ++MR +S+ V K+AEGSCL+K GDTH+L TAT+EE+VP +++ + GW+T
Sbjct: 1 MRPSGRNLSEMRPVSIETGVLKHAEGSCLIKIGDTHVLCTATIEERVPPFVKGSGLGWVT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPRST +R++REA +G+QGGR+ EIQR+IGR+LR+ VD ALG RQI +DCDVIQ
Sbjct: 61 AEYGMLPRSTNSRMRREATAGKQGGRTVEIQRLIGRSLRAGVDRVALGERQITVDCDVIQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTR A+ITG WVAL +Q + + + VAA+SCG+ G P++DLDY
Sbjct: 121 ADGGTRCASITGGWVALKLAVQKLMKAGDVISDPLI--DPVAAVSCGIYAGQPVLDLDYP 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
EDS VD NF+MT S ++EVQ SAE +T+S+D +L+LA+ + L+ Q++
Sbjct: 179 EDSEAGVDGNFIMTGSKRLIEVQMSAEGSTYSRDQMNTLLDLAEQGVDLLVAKQREA 235
>gi|315497101|ref|YP_004085905.1| ribonuclease ph [Asticcacaulis excentricus CB 48]
gi|315415113|gb|ADU11754.1| ribonuclease PH [Asticcacaulis excentricus CB 48]
Length = 250
Score = 180 bits (457), Expect = 1e-43, Method: Composition-based stats.
Identities = 122/237 (51%), Positives = 167/237 (70%), Gaps = 2/237 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
R S RQ +Q+R+++L V++YAEGSCL+ G T +L TA++E+ VP +++ GW+T
Sbjct: 13 FRPSNRQADQLRKVTLETGVTRYAEGSCLITVGHTKVLATASVEQGVPPFLKGKGQGWVT 72
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPRST R +REA +G+Q GR+QEIQR+IGR+LR+VVDL ALG RQI +DCDVIQ
Sbjct: 73 AEYGMLPRSTHTRSRREAAAGKQSGRTQEIQRLIGRSLRAVVDLKALGERQITLDCDVIQ 132
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTR A+IT AWVAL + + K + + VAA+SCG+ P++DLDY
Sbjct: 133 ADGGTRCASITAAWVALSLACDKLLEQ--KLISASPIIDQVAAVSCGVFENVPVLDLDYD 190
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
EDST + D+NFV+T SGHIVE+Q + E+ FS+D F + +LA +L LQ++
Sbjct: 191 EDSTAETDSNFVLTGSGHIVEIQATGEKRGFSRDEFNTLFDLATQGATELFALQREA 247
>gi|307730700|ref|YP_003907924.1| ribonuclease PH [Burkholderia sp. CCGE1003]
gi|307585235|gb|ADN58633.1| ribonuclease PH [Burkholderia sp. CCGE1003]
Length = 246
Score = 180 bits (457), Expect = 1e-43, Method: Composition-based stats.
Identities = 127/238 (53%), Positives = 167/238 (70%), Gaps = 2/238 (0%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R SGR +Q+R++ +TR +K+AEGS LV+FGDT ++ TA++ E VP ++R+ GW+TA
Sbjct: 7 RPSGRLADQLRDVRITRHYTKHAEGSVLVEFGDTKVICTASIAETVPSFLRDRGQGWLTA 66
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
EYGMLPR+T R REA G+Q GR+QEIQR+IGRALRSV DL LG+R + IDCDVIQA
Sbjct: 67 EYGMLPRATHTRSDREAARGKQTGRTQEIQRLIGRALRSVFDLEKLGARTLHIDCDVIQA 126
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
DGGTRTA+ITGA+VA HD + + + + VAAIS G+ G P++DLDY E
Sbjct: 127 DGGTRTASITGAFVAAHDAVSKLLAAGHIEGS--PISDFVAAISVGIYDGVPVLDLDYDE 184
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
DS D D N VMT +G VE+QG+AE FS++ A+L+LA D IA LI QK+ +
Sbjct: 185 DSQCDTDMNVVMTGAGGFVEIQGTAEGVPFSREEMNALLDLASDGIATLIARQKEALE 242
>gi|121728030|ref|ZP_01681069.1| ribonuclease PH [Vibrio cholerae V52]
gi|121629733|gb|EAX62152.1| ribonuclease PH [Vibrio cholerae V52]
gi|146315337|gb|ABQ19876.1| ribonuclease PH [Vibrio cholerae O395]
gi|227012057|gb|ACP08267.1| ribonuclease PH [Vibrio cholerae O395]
Length = 257
Score = 180 bits (457), Expect = 1e-43, Method: Composition-based stats.
Identities = 121/238 (50%), Positives = 163/238 (68%), Gaps = 2/238 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR R +Q+R I +TR + YAEGS LV+FG+T +L A++EE VP W++ GW+T
Sbjct: 20 MRPDNRAADQVRSIKITRHYTAYAEGSVLVEFGNTKVLCNASIEEGVPRWLKGQGKGWVT 79
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPR+T +R +REA +G+QGGR+ EIQR+I R+LR+VVDL A+G I +DCDVIQ
Sbjct: 80 AEYGMLPRATHSRTRREATNGKQGGRTMEIQRLIARSLRAVVDLEAMGEIMITVDCDVIQ 139
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+ITGA VAL D H+ +KGHVAA+S G+L + DL+Y
Sbjct: 140 ADGGTRTASITGASVALADAFAHLIAK--GQLKKNPMKGHVAAVSVGILGEDVLCDLEYV 197
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
EDS D D N VMT+ G ++E+QG+AE FS + +L +AK IAD++ +QK +
Sbjct: 198 EDSAADTDMNVVMTEEGKMIEIQGTAEGEPFSHEQLLELLAVAKKGIADIVAVQKASL 255
>gi|300714644|ref|YP_003739447.1| ribonuclease PH [Erwinia billingiae Eb661]
gi|299060480|emb|CAX57587.1| Ribonuclease PH [Erwinia billingiae Eb661]
Length = 238
Score = 180 bits (456), Expect = 1e-43, Method: Composition-based stats.
Identities = 124/240 (51%), Positives = 164/240 (68%), Gaps = 2/240 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR +GR Q+R ++LTR +K+AEGS LV+FGDT +L TAT+EE VP +++ GW+T
Sbjct: 1 MRPAGRSAQQVRPVTLTRHYTKHAEGSVLVEFGDTKVLCTATIEEGVPRFLKGQGQGWVT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPR+T +R REA G+QGGR+ EIQR+I R+LR+ +DL ALG I +DCDV+Q
Sbjct: 61 AEYGMLPRATHSRNAREAAKGKQGGRTLEIQRLIARSLRAALDLKALGEFTITLDCDVLQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+ITGA VAL D L H+ + +KG VAAIS G++ G + DL+Y
Sbjct: 121 ADGGTRTASITGACVALADALNHLVS--IGKLKTNPMKGMVAAISVGIVNGEALCDLEYV 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
EDS + D N VMT+ G ++EVQG+AE FS D +L LA+ I LI QK + +
Sbjct: 179 EDSAAETDMNVVMTEDGRMIEVQGTAEGEPFSHDELLQLLALARGGIDSLILAQKAALKD 238
>gi|39933406|ref|NP_945682.1| ribonuclease PH [Rhodopseudomonas palustris CGA009]
gi|192288763|ref|YP_001989368.1| ribonuclease PH [Rhodopseudomonas palustris TIE-1]
gi|61215953|sp|Q6NCY8|RNPH_RHOPA RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|226736930|sp|B3Q968|RNPH_RHOPT RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|39647252|emb|CAE25773.1| ribonuclease PH [Rhodopseudomonas palustris CGA009]
gi|192282512|gb|ACE98892.1| ribonuclease PH [Rhodopseudomonas palustris TIE-1]
Length = 237
Score = 180 bits (456), Expect = 1e-43, Method: Composition-based stats.
Identities = 143/239 (59%), Positives = 181/239 (75%), Gaps = 2/239 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR S R +++R +SL R V KYAEGSCLVKFGDTH+L TATLEE++P W++ GW+T
Sbjct: 1 MRPSRRAPDELRAVSLERGVVKYAEGSCLVKFGDTHVLVTATLEERLPPWLKGQGRGWVT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPR+T R +REA +G+Q GR+ EIQR+IGR+LR++VDL ALG RQI +DCDV+Q
Sbjct: 61 AEYGMLPRATLERTRREASAGKQNGRTVEIQRLIGRSLRTIVDLEALGERQITVDCDVLQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+ITGAWVAL DCL M+ + QVL+ +VAAISCG+ G P++DLDY
Sbjct: 121 ADGGTRTASITGAWVALADCLNWMKARNM--IKGQVLRDNVAAISCGIYNGTPVLDLDYA 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
EDS + DANFVMT G +VEVQG+AER FSQD F ++ LA+ +A L+ LQK +
Sbjct: 179 EDSEAETDANFVMTGDGRLVEVQGTAERTPFSQDEFLQLMALAQKGVARLVDLQKMAVG 237
>gi|295706788|ref|YP_003599863.1| ribonuclease PH [Bacillus megaterium DSM 319]
gi|294804447|gb|ADF41513.1| ribonuclease PH [Bacillus megaterium DSM 319]
Length = 248
Score = 180 bits (456), Expect = 1e-43, Method: Composition-based stats.
Identities = 113/238 (47%), Positives = 161/238 (67%), Gaps = 2/238 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MRL GR+ N++R +SL K+ EGS L+ GDT ++ TA+++++VP ++R GWIT
Sbjct: 1 MRLDGREFNELRSVSLHTSYLKHPEGSVLISVGDTKVICTASIDDRVPPFMRGQGKGWIT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEY MLPR+T R RE+ G+ GR+ EIQR+IGRALRSVVDL +G + I IDCDVIQ
Sbjct: 61 AEYSMLPRATAQRNIRESSKGKVTGRTMEIQRLIGRALRSVVDLEKVGEKTIWIDCDVIQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+ITGA+VA+ + + + ++ ++AA S G+ I+DL+Y
Sbjct: 121 ADGGTRTASITGAFVAMVLAFGKLVEEN--KLTEIPIRDYLAATSVGIHGENSILDLNYE 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
EDST +VD N VMT SG VE+QG+ E +TFS++ +L+L + + LI+ QK+V+
Sbjct: 179 EDSTAEVDMNIVMTGSGQFVELQGTGEESTFSREQLNHLLDLGEKGVYQLIEQQKEVL 236
>gi|237813382|ref|YP_002897833.1| tRNA nucleotidyltransferase [Burkholderia pseudomallei MSHR346]
gi|237506567|gb|ACQ98885.1| tRNA nucleotidyltransferase [Burkholderia pseudomallei MSHR346]
Length = 243
Score = 180 bits (456), Expect = 1e-43, Method: Composition-based stats.
Identities = 125/239 (52%), Positives = 173/239 (72%), Gaps = 2/239 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+R SGR+ +Q+R++ +TR +K+AEG+ LV+FGDT ++ TA++ E+VP ++R GW+T
Sbjct: 6 LRPSGRRADQLRDVRITRHYTKHAEGAVLVEFGDTKVICTASVAERVPEFLRERGQGWLT 65
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPR+T R REA G+Q GR+QEIQR+IGRALR+V DL+ALG R + +DCDVIQ
Sbjct: 66 AEYGMLPRATHTRSDREAARGKQTGRTQEIQRLIGRALRAVFDLNALGPRTLHLDCDVIQ 125
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+ITGA+VA HD + + + + +VAAIS G+ G P++DLDYG
Sbjct: 126 ADGGTRTASITGAFVAAHDAVTKLVAAGRIARS--PITDYVAAISVGVFGGTPVLDLDYG 183
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
EDS D D N VMT +G VEVQG+AE A FS+ A+L+LA+ I +L++LQ+ +
Sbjct: 184 EDSACDTDMNVVMTGAGGFVEVQGTAEGAPFSRTEMNALLDLAQAGIGELVRLQRAALE 242
>gi|319780511|ref|YP_004139987.1| ribonuclease PH [Mesorhizobium ciceri biovar biserrulae WSM1271]
gi|317166399|gb|ADV09937.1| ribonuclease PH [Mesorhizobium ciceri biovar biserrulae WSM1271]
Length = 238
Score = 180 bits (456), Expect = 1e-43, Method: Composition-based stats.
Identities = 150/239 (62%), Positives = 187/239 (78%), Gaps = 1/239 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR S RQ ++MR IS R VSK+AEGSCLVKFGDTH+L TA+LEEKVP W+RN+ GW+T
Sbjct: 1 MRPSKRQFDEMRAISFERGVSKHAEGSCLVKFGDTHVLCTASLEEKVPGWMRNSGKGWVT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPRSTG R++REA +G+QGGR+ EIQR+IGR+LR+VVDL ALG +QI +DCDVIQ
Sbjct: 61 AEYGMLPRSTGERMRREASAGKQGGRTLEIQRLIGRSLRAVVDLQALGEQQITVDCDVIQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+ITG WVAL+DCL+ ME +++VLK HVAAISCG+ G P++DLDY
Sbjct: 121 ADGGTRTASITGGWVALYDCLRWMEARQM-ASVAKVLKDHVAAISCGIHDGQPVIDLDYI 179
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
EDS DANFVMT G IVE+QG+AE FS++ F ++ LAK I L+ LQ+ ++
Sbjct: 180 EDSAAGTDANFVMTGKGGIVEIQGTAEGEPFSEEQFADLMGLAKKGIQRLVSLQQMAVA 238
>gi|163750741|ref|ZP_02157977.1| ribonuclease PH [Shewanella benthica KT99]
gi|161329585|gb|EDQ00577.1| ribonuclease PH [Shewanella benthica KT99]
Length = 237
Score = 180 bits (456), Expect = 1e-43, Method: Composition-based stats.
Identities = 122/239 (51%), Positives = 163/239 (68%), Gaps = 2/239 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR S R Q R +++TR+ + +AEGS LV+FG+T +L TA+ E VP +++ GW+T
Sbjct: 1 MRPSDRTPAQSRPVTITRQFTAHAEGSVLVEFGETKVLCTASFEVGVPRFLKGKGQGWVT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPRST R+ REA G+Q GR+QEIQR+IGR+LR+ VD+ ALG IIIDCDVIQ
Sbjct: 61 AEYGMLPRSTHTRMNREAARGKQSGRTQEIQRLIGRSLRAAVDMKALGENTIIIDCDVIQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTAAITGA VAL D L + LK +AA+S G+ G PI DL+Y
Sbjct: 121 ADGGTRTAAITGACVALVDALNW--ARGKGILKTNPLKFLIAAVSVGIYKGEPICDLEYI 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
EDS + D N VMT++G ++E+QG+AE FS + +ML LAK I +++ +QK ++
Sbjct: 179 EDSEAETDMNVVMTETGQMIEIQGTAEGEPFSHEELLSMLELAKHGIREIVDVQKAALN 237
>gi|154686972|ref|YP_001422133.1| ribonuclease PH [Bacillus amyloliquefaciens FZB42]
gi|166228265|sp|A7Z7C6|RNPH_BACA2 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|154352823|gb|ABS74902.1| Rph [Bacillus amyloliquefaciens FZB42]
Length = 245
Score = 180 bits (456), Expect = 1e-43, Method: Composition-based stats.
Identities = 107/242 (44%), Positives = 150/242 (61%), Gaps = 1/242 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR GRQ +++R I+ + EGS L+ G+T ++ A++E++VP ++R GWIT
Sbjct: 1 MRHDGRQHDELRPITFDLDFITHPEGSVLITAGNTKVICNASVEDRVPPFLRGGGKGWIT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEY MLPR+T R RE+ G+ GR+ EIQR+IGRALR+VVDL LG R I IDCDVIQ
Sbjct: 61 AEYSMLPRATNQRTIRESSKGKVSGRTMEIQRLIGRALRAVVDLEKLGERTIWIDCDVIQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+ITGA++A+ + + V A ++DL+Y
Sbjct: 121 ADGGTRTASITGAFLAMAIAIGKLVKSGVIKTSP-VTDYLAAISVGMDKEEGLLLDLNYE 179
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
EDS +VD N +MT SG VE+QG+ E ATFS++ +L+LA+ I LI+ QK+V+
Sbjct: 180 EDSAAEVDMNIIMTGSGRFVELQGTGEEATFSREDLNGLLSLAEKGIQTLIQKQKEVLGE 239
Query: 241 EV 242
+
Sbjct: 240 TL 241
>gi|317403008|gb|EFV83546.1| ribonuclease PH [Achromobacter xylosoxidans C54]
Length = 244
Score = 180 bits (456), Expect = 1e-43, Method: Composition-based stats.
Identities = 120/238 (50%), Positives = 164/238 (68%), Gaps = 2/238 (0%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R SGR +++R SL R ++YAEGS LVK G+TH+L TA++ EKVP +++ GW+TA
Sbjct: 9 RPSGRAVDELRPFSLERGFTRYAEGSVLVKAGNTHVLCTASVLEKVPPFLKGKGEGWVTA 68
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
EYGMLPR+T R REA G+Q GR+QEIQR+IGR+LR+V D+ ALG R + +DCDV+QA
Sbjct: 69 EYGMLPRATHTRGDREAARGKQSGRTQEIQRLIGRSLRAVFDMRALGERTLHLDCDVLQA 128
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
DGGTR A+ITGAWVA D + + ++ VAA+S G++ G P++DLDY E
Sbjct: 129 DGGTRCASITGAWVAASDAVALL--MQRGDLAVNPIRDAVAAVSVGLVQGRPVLDLDYEE 186
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
DS D D N +MT G VEVQG+ E ATF++ AML LA++ IA L++ Q+ ++
Sbjct: 187 DSACDADVNVIMTGGGAFVEVQGTGEGATFTRAELDAMLGLAENGIAGLVRAQRAALA 244
>gi|312143229|ref|YP_003994675.1| ribonuclease PH [Halanaerobium sp. 'sapolanicus']
gi|311903880|gb|ADQ14321.1| ribonuclease PH [Halanaerobium sp. 'sapolanicus']
Length = 239
Score = 180 bits (456), Expect = 1e-43, Method: Composition-based stats.
Identities = 109/235 (46%), Positives = 159/235 (67%), Gaps = 2/235 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR GR+ +Q+R+I +TR +KYAEGS LV+ GDT +L ++E+ VP ++R GW+T
Sbjct: 1 MRNDGRELDQLRDIQITRDFTKYAEGSVLVETGDTMVLCNVSIEDSVPYFLRGQNTGWLT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEY +LPR+T +R REA + GR+QEIQR+IGR+LR+++DL +G R I +DCDV+Q
Sbjct: 61 AEYSLLPRATQDRNIREAAKRKLSGRTQEIQRLIGRSLRAIIDLDKMGERTIWVDCDVLQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+ITGA+VAL D + + LK +AA S G++ G ++DL Y
Sbjct: 121 ADGGTRTASITGAYVALVDAVNFLLAE--GKLSENPLKDFMAATSVGIVEGKAMLDLCYE 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
ED VD N MT++G I+E+QG+AE F+++ + +LA+ I +LI++QK
Sbjct: 179 EDFRAQVDMNIAMTENGEIIEIQGTAEENPFTREEMNKLYDLAEKGIRELIEIQK 233
>gi|332141636|ref|YP_004427374.1| ribonuclease PH [Alteromonas macleodii str. 'Deep ecotype']
gi|332143438|ref|YP_004429176.1| ribonuclease PH [Alteromonas macleodii str. 'Deep ecotype']
gi|226736881|sp|B4S201|RNPH_ALTMD RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|327551658|gb|AEA98376.1| ribonuclease PH [Alteromonas macleodii str. 'Deep ecotype']
gi|327553460|gb|AEB00179.1| ribonuclease PH [Alteromonas macleodii str. 'Deep ecotype']
Length = 237
Score = 180 bits (456), Expect = 2e-43, Method: Composition-based stats.
Identities = 116/239 (48%), Positives = 161/239 (67%), Gaps = 2/239 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR SGR +Q+R +++TR+ + +AEGS LV+FG+T +L AT+EE VP +++ GW+T
Sbjct: 1 MRPSGRTASQIRPVTITRQYTCHAEGSVLVEFGNTKVLCNATVEEGVPRFMKGQGKGWVT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEY MLPR+T R REA G+QGGR+ EIQR+I R+LR+ +DL LG I +DCDVIQ
Sbjct: 61 AEYSMLPRATHTRSGREAARGKQGGRTLEIQRLIARSLRAALDLKLLGENTITLDCDVIQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+ITGA VAL D L +M + LK +AA+S G+ G PI DL+Y
Sbjct: 121 ADGGTRTASITGACVALVDALTYMRSK--GIIKTNPLKHMIAALSVGIYEGTPIADLEYT 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
EDS + D N VMT++G ++EVQG+AE FS + +L + K + +L +QK ++
Sbjct: 179 EDSEAETDMNIVMTETGKLIEVQGTAEGEPFSFEELDELLKIGKHGLRELFDIQKAALA 237
>gi|110833067|ref|YP_691926.1| ribonuclease PH [Alcanivorax borkumensis SK2]
gi|123345879|sp|Q0VT66|RNPH_ALCBS RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|110646178|emb|CAL15654.1| ribonuclease PH [Alcanivorax borkumensis SK2]
Length = 238
Score = 180 bits (456), Expect = 2e-43, Method: Composition-based stats.
Identities = 120/239 (50%), Positives = 163/239 (68%), Gaps = 2/239 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR SGR +Q+RE+S TR + +AEGS LV FG+T +L TA++E+ VP +++ GW+T
Sbjct: 1 MRPSGRAPDQLRELSFTRNYTVHAEGSVLVAFGNTKVLCTASVEDGVPRFLKGKGQGWLT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEY MLPRST R REA G+QGGR+ EIQR+IGR+LR+ VD+ ALG R I +DCDV+Q
Sbjct: 61 AEYSMLPRSTHTRSGREATRGKQGGRTLEIQRLIGRSLRAAVDMKALGERTIYLDCDVLQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+I+GA VAL D ++ + K + L G V A+S GM P++DLDY
Sbjct: 121 ADGGTRTASISGACVALVDAFTYLLET--KKIKNDPLTGLVGAVSVGMYKDTPVLDLDYA 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
EDS D N VMT G +E+QGSAE A F+++ +L LA++ I ++IK Q+ +
Sbjct: 179 EDSNAGTDMNVVMTQQGGFIEIQGSAEGAPFTREQSDNLLELAENGIGEIIKAQQVALG 237
>gi|322513841|ref|ZP_08066923.1| tRNA nucleotidyltransferase [Actinobacillus ureae ATCC 25976]
gi|322120328|gb|EFX92267.1| tRNA nucleotidyltransferase [Actinobacillus ureae ATCC 25976]
Length = 238
Score = 180 bits (456), Expect = 2e-43, Method: Composition-based stats.
Identities = 124/239 (51%), Positives = 165/239 (69%), Gaps = 2/239 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR + R+ NQ+R + +TR ++YAEGS LV+FG+T +L AT+EE VP +++ + GW+T
Sbjct: 1 MRPNNRELNQVRPVKITRHYTRYAEGSVLVEFGETKVLCNATVEETVPRFLKGQQQGWVT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPRST +R++REA G+QGGR+ EIQR+I R+LR+VVDL ALG R I +DCDVIQ
Sbjct: 61 AEYGMLPRSTHSRMQREAAKGKQGGRTMEIQRLIARSLRAVVDLKALGERTITVDCDVIQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTAAITGA VALHD + + S +KG VAAIS G++ G + DL+Y
Sbjct: 121 ADGGTRTAAITGACVALHDAMSKLVADS--VLKENPMKGLVAAISVGIVDGNAVCDLEYV 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
EDS + D N VM + G +VEVQG+AE FS +L+LA I L+ Q+ +
Sbjct: 179 EDSNAETDMNVVMVEDGRLVEVQGTAEGEPFSHMELLQLLDLAHQGINQLLDAQRKALG 237
>gi|166713272|ref|ZP_02244479.1| ribonuclease PH [Xanthomonas oryzae pv. oryzicola BLS256]
Length = 241
Score = 180 bits (456), Expect = 2e-43, Method: Composition-based stats.
Identities = 121/238 (50%), Positives = 160/238 (67%), Gaps = 2/238 (0%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R SGR +Q+R + + R +++AEGS LV FGDT +L TA++E +VP ++R GW+TA
Sbjct: 5 RPSGRTADQLRPVRIERAFTRHAEGSVLVSFGDTRVLCTASVENRVPNFLRGKGEGWVTA 64
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
EYGMLPRST R REA G+QGGR+ EIQR+IGRALR+ VD +ALG R I +DCDV+QA
Sbjct: 65 EYGMLPRSTHTRSDREAARGKQGGRTLEIQRLIGRALRACVDRNALGERTITLDCDVLQA 124
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
DGGTRT AITGA+VAL D + + L G VAA+S G+ G P++DLDY E
Sbjct: 125 DGGTRTTAITGAYVALADAVNLLLKR--GEIKKHPLIGAVAAVSVGIYRGEPVLDLDYPE 182
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
DS D D N VM D G +E+QG+AE F +D A+L LA+ + +L LQ+ ++
Sbjct: 183 DSDCDTDMNVVMNDGGGFIELQGTAEGHAFRRDELNALLALAEKGMGELFALQRAALA 240
>gi|187929359|ref|YP_001899846.1| ribonuclease PH [Ralstonia pickettii 12J]
gi|309781786|ref|ZP_07676519.1| tRNA nucleotidyltransferase [Ralstonia sp. 5_7_47FAA]
gi|226736927|sp|B2U8D8|RNPH_RALPJ RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|187726249|gb|ACD27414.1| ribonuclease PH [Ralstonia pickettii 12J]
gi|308919427|gb|EFP65091.1| tRNA nucleotidyltransferase [Ralstonia sp. 5_7_47FAA]
Length = 238
Score = 180 bits (456), Expect = 2e-43, Method: Composition-based stats.
Identities = 127/239 (53%), Positives = 165/239 (69%), Gaps = 2/239 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR SGRQ +Q+R ++LTR+ +++AEGS LV FGDT +L TA++ KVP + + GW+T
Sbjct: 1 MRPSGRQPDQLRPVTLTRKFTRHAEGSVLVCFGDTQVLCTASVLPKVPPHKKGSGEGWVT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPRST R REA G+Q GR+QEIQR+IGRA+R+V DL ALG + +DCDV+Q
Sbjct: 61 AEYGMLPRSTHTRSDREAARGKQSGRTQEIQRLIGRAMRTVFDLRALGEHTLHLDCDVLQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+ITGA+VA +D + M + + ++ VAA+S G++ G P++DLDY
Sbjct: 121 ADGGTRTASITGAFVAAYDAVSVMREK--GQLVGDPVRDFVAAVSVGVVDGVPVLDLDYP 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
EDS D D N VMT SG VEVQG+AE FS+ AML LA I LI LQK +
Sbjct: 179 EDSACDTDMNVVMTGSGGFVEVQGTAEGTPFSRAEMDAMLGLADQGIRTLISLQKQALG 237
>gi|291460911|ref|ZP_06025826.2| ribonuclease PH/Ham1 protein [Fusobacterium periodonticum ATCC
33693]
gi|291380070|gb|EFE87588.1| ribonuclease PH/Ham1 protein [Fusobacterium periodonticum ATCC
33693]
Length = 436
Score = 180 bits (456), Expect = 2e-43, Method: Composition-based stats.
Identities = 113/241 (46%), Positives = 157/241 (65%), Gaps = 2/241 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+R GR+ N+ R+I +T+ V+ YAEGS L++ G+T ++ TA++ EKVP ++R T GW+T
Sbjct: 3 LREDGRKFNEERKIKITKDVNIYAEGSVLIEVGNTKVICTASVSEKVPPFLRGTGKGWVT 62
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEY MLPR+T R +REA G+ GR+ EIQR+IGRALRS +DL LG R I IDCDVIQ
Sbjct: 63 AEYSMLPRATNERNQREASKGKLTGRTVEIQRLIGRALRSAIDLEKLGERLITIDCDVIQ 122
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRT +ITG ++AL ++ + + + VAAIS G + +VDL Y
Sbjct: 123 ADGGTRTTSITGGYIALALAIKKLLKEEILEENPLIAN--VAAISVGKINSELMVDLKYS 180
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
EDS +VD N +M G +EVQG+ E +TF++ +L+LA+ I +I LQ VI
Sbjct: 181 EDSAAEVDMNVIMNKKGEFIEVQGTGEESTFTRAELNGLLDLAEASIKRIIDLQDKVIEQ 240
Query: 241 E 241
E
Sbjct: 241 E 241
>gi|117617491|ref|YP_858647.1| ribonuclease PH [Aeromonas hydrophila subsp. hydrophila ATCC 7966]
gi|117558898|gb|ABK35846.1| ribonuclease PH [Aeromonas hydrophila subsp. hydrophila ATCC 7966]
Length = 257
Score = 180 bits (456), Expect = 2e-43, Method: Composition-based stats.
Identities = 124/238 (52%), Positives = 163/238 (68%), Gaps = 2/238 (0%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R S R Q+R +++TR +K+AEGS LV+FG+T +L TA+++ VP +++ GW+TA
Sbjct: 22 RPSDRTAAQLRPVTITRHFTKHAEGSVLVEFGNTRVLCTASVDTSVPRFLKGKNQGWVTA 81
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
EYGMLPRST +R+ REA SG+Q GR+ EI R+I R+LR+ VDL+ALG I +DCDV+QA
Sbjct: 82 EYGMLPRSTHSRMNREAASGKQSGRTLEISRLIARSLRAAVDLTALGEHSITVDCDVLQA 141
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
DGGTRTAAITGA VAL D L M + Q LK +AA+S GM G I DL+Y E
Sbjct: 142 DGGTRTAAITGACVALVDALNWMVEKGMLKQS--PLKQMIAAVSVGMYQGEAICDLEYIE 199
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
DS + D N VMT+ G I+EVQG+AE F+ + ML LAK IAD+I LQK ++
Sbjct: 200 DSAAETDMNVVMTEDGRIIEVQGTAEAEPFTHEELLEMLALAKGGIADIIALQKQSLA 257
>gi|319775856|ref|YP_004138344.1| ribonuclease PH [Haemophilus influenzae F3047]
gi|329123701|ref|ZP_08252261.1| tRNA nucleotidyltransferase [Haemophilus aegyptius ATCC 11116]
gi|317450447|emb|CBY86663.1| ribonuclease PH [Haemophilus influenzae F3047]
gi|327469900|gb|EGF15365.1| tRNA nucleotidyltransferase [Haemophilus aegyptius ATCC 11116]
Length = 238
Score = 180 bits (456), Expect = 2e-43, Method: Composition-based stats.
Identities = 118/239 (49%), Positives = 165/239 (69%), Gaps = 2/239 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR + R+ NQ R+I +TR +K+AEGS LV+FGDT +L TAT+E+ VP +++ GW+T
Sbjct: 1 MRPNNRENNQPRQIKITRNYTKHAEGSVLVEFGDTKVLCTATVEDAVPRFLKGQGQGWVT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPRST +R++REA G+Q GR+ EIQR+I R+LR++VDL ALG R I +DCDVIQ
Sbjct: 61 AEYGMLPRSTHSRMQREAAKGKQSGRTMEIQRLIARSLRAMVDLKALGERAITLDCDVIQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+ITGA VAL D + + + + +KG V+AIS G++ G + DL+Y
Sbjct: 121 ADGGTRTASITGAAVALCDAINGLIEN--GTLKTNPIKGLVSAISVGIVDGQAVCDLEYV 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
EDS + D N VM + G ++EVQG+AE FS + +L+LAK + Q++ +
Sbjct: 179 EDSAAETDMNVVMMEDGRMIEVQGTAEGEPFSHEELLTLLDLAKQGCNQIFIAQREALG 237
>gi|294783495|ref|ZP_06748819.1| ribonuclease PH/Ham1 protein [Fusobacterium sp. 1_1_41FAA]
gi|294480373|gb|EFG28150.1| ribonuclease PH/Ham1 protein [Fusobacterium sp. 1_1_41FAA]
Length = 435
Score = 180 bits (456), Expect = 2e-43, Method: Composition-based stats.
Identities = 114/241 (47%), Positives = 157/241 (65%), Gaps = 2/241 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+R GR+ N+ R+I +T+ V+ YAEGS L++ G+T ++ TA++ EKVP ++R T GW+T
Sbjct: 2 LREDGRKFNEERKIKITKDVNIYAEGSVLIEVGNTKVICTASVSEKVPPFLRGTGKGWVT 61
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEY MLPR+T R +REA G+ GR+ EIQR+IGRALRS +DL LG R I IDCDVIQ
Sbjct: 62 AEYSMLPRATNERNQREASKGKLTGRTVEIQRLIGRALRSAIDLEKLGERLITIDCDVIQ 121
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRT +ITG +VAL ++ + + + VAAIS G + +VDL Y
Sbjct: 122 ADGGTRTTSITGGYVALALAIKKLLKDEILEENPLIAN--VAAISVGKIDSELMVDLKYS 179
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
EDS +VD N +M G +EVQG+ E +TF++ +L+LA+ I +I LQ VI
Sbjct: 180 EDSVAEVDMNVIMNKKGEFIEVQGTGEESTFTRAELNGLLDLAEASIKRIIDLQDKVIEQ 239
Query: 241 E 241
E
Sbjct: 240 E 240
>gi|145297207|ref|YP_001140048.1| ribonuclease PH [Aeromonas salmonicida subsp. salmonicida A449]
gi|142849979|gb|ABO88300.1| ribonuclease PH [Aeromonas salmonicida subsp. salmonicida A449]
Length = 240
Score = 180 bits (456), Expect = 2e-43, Method: Composition-based stats.
Identities = 122/238 (51%), Positives = 163/238 (68%), Gaps = 2/238 (0%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R S R Q+R +++TR +K+AEGS LV+FG+T +L TA+++ VP +++ GW+TA
Sbjct: 3 RPSDRSAAQLRPVTITRNFTKHAEGSVLVEFGNTRVLCTASVDTSVPRFLKGKGQGWVTA 62
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
EYGMLPRST +R+ REA +G+Q GR+ EI R+I R+LR+ VDL+ALG I +DCDV+QA
Sbjct: 63 EYGMLPRSTHSRMNREAAAGKQSGRTLEISRLIARSLRAAVDLTALGEHSITVDCDVLQA 122
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
DGGTRTA+ITGA VAL D L M + Q LK +AA+S GM G I DL+Y E
Sbjct: 123 DGGTRTASITGACVALVDALNWMVEKGMIKQS--PLKQMIAAVSVGMYQGEAICDLEYIE 180
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
DS + D N VMT+ G I+EVQG+AE F+ + AML LAK I ++I LQK +S
Sbjct: 181 DSAAETDMNVVMTEDGRIIEVQGTAEAEPFTHEELLAMLGLAKGGIEEIIALQKQSLS 238
>gi|134295025|ref|YP_001118760.1| ribonuclease PH [Burkholderia vietnamiensis G4]
gi|166228274|sp|A4JCC2|RNPH_BURVG RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|134138182|gb|ABO53925.1| RNAse PH [Burkholderia vietnamiensis G4]
Length = 246
Score = 180 bits (455), Expect = 2e-43, Method: Composition-based stats.
Identities = 131/242 (54%), Positives = 174/242 (71%), Gaps = 3/242 (1%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R SGR+ +++R+++LTR +K+AEGS LV+FGDT ++ TA++ E+VP ++R GW+TA
Sbjct: 7 RPSGRRADELRKVALTRHYTKHAEGSVLVEFGDTKVICTASVVERVPEFLRERGQGWLTA 66
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
EYGMLPR+T R REA G+Q GR+QEIQR+IGRALR+V DL ALG R I IDCDVIQA
Sbjct: 67 EYGMLPRATHTRSDREAARGKQTGRTQEIQRLIGRALRAVFDLEALGPRTINIDCDVIQA 126
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
DGGTRTA+ITGA+VA HD + + + + HVAAIS G+ G P++DLDY E
Sbjct: 127 DGGTRTASITGAFVAAHDAVSKLIAAGKLARS--PITDHVAAISVGVYEGAPVLDLDYAE 184
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI-SN 240
DS D D N VMT +G VEVQG+AE FS+ A+L+LA+ I L++LQKDV+ ++
Sbjct: 185 DSRCDTDMNVVMTGAGGFVEVQGTAEGVPFSRAEMNALLDLAQAGIGRLVQLQKDVLGAD 244
Query: 241 EV 242
V
Sbjct: 245 HV 246
>gi|306819763|ref|ZP_07453420.1| ribonuclease PH/Ham1 protein [Eubacterium yurii subsp. margaretiae
ATCC 43715]
gi|304552198|gb|EFM40132.1| ribonuclease PH/Ham1 protein [Eubacterium yurii subsp. margaretiae
ATCC 43715]
Length = 459
Score = 180 bits (455), Expect = 2e-43, Method: Composition-based stats.
Identities = 107/237 (45%), Positives = 159/237 (67%), Gaps = 2/237 (0%)
Query: 6 RQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGM 65
R N+MR I +T+ + YA+GS L++FG+T ++ TA++EEKVP +++N+ GWI+AEY M
Sbjct: 15 RANNEMRRIRITKNYAGYADGSVLIEFGNTKVICTASVEEKVPPFLKNSGTGWISAEYSM 74
Query: 66 LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125
LP ST R R++ G+ GRSQEIQR+IGR+LR+ VD + LG R I IDCDVIQADGGT
Sbjct: 75 LPGSTKQRKVRDSTRGKIDGRSQEIQRLIGRSLRNAVDFTKLGERTIWIDCDVIQADGGT 134
Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185
RT +I GA++A+ ++ + D K + ++AIS G++ G ++DL Y +DS
Sbjct: 135 RTTSINGAFIAMALAVKKLYDR--KIISHFPIDSFISAISVGIVRGENVLDLCYEQDSNA 192
Query: 186 DVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNEV 242
VD N VMT G VE+QG+ E+ FS+D +L LA+ ++ LQK+++ +E+
Sbjct: 193 QVDMNIVMTSKGEFVEIQGTGEQTPFSRDSLNDLLTLAEKANEKIVNLQKEILGDEI 249
>gi|256823650|ref|YP_003147613.1| ribonuclease PH [Kangiella koreensis DSM 16069]
gi|256797189|gb|ACV27845.1| ribonuclease PH [Kangiella koreensis DSM 16069]
Length = 238
Score = 180 bits (455), Expect = 2e-43, Method: Composition-based stats.
Identities = 121/239 (50%), Positives = 165/239 (69%), Gaps = 2/239 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR SGR NQ+R I++TR+ +K+AEGS L++FG+T +L A++ + VP +++ GWIT
Sbjct: 1 MRPSGRTSNQLRPITITRQFTKHAEGSVLIEFGETKVLCNASVVDNVPRFLKGKGQGWIT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPRST +R+ REA G+QGGR+ EIQR+IGR+LR+ VDLS LG I +DCDV+Q
Sbjct: 61 AEYGMLPRSTHSRMDREASRGKQGGRTLEIQRLIGRSLRAAVDLSQLGENTIYVDCDVLQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+I+GA +ALHD L HM + LK V ++S G+ G PI+DLDY
Sbjct: 121 ADGGTRTASISGASIALHDALFHMRKT--GMIKTNPLKHMVGSVSVGIYKGTPILDLDYL 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
EDS + D N VM ++G +E+QG+AE TF+ D ML L K I ++ LQ ++
Sbjct: 179 EDSAAETDMNLVMDENGGFIEIQGTAEGETFTGDELMQMLELGKQGIREIFDLQHKAVA 237
>gi|296114411|ref|ZP_06833065.1| ribonuclease PH [Gluconacetobacter hansenii ATCC 23769]
gi|295979172|gb|EFG85896.1| ribonuclease PH [Gluconacetobacter hansenii ATCC 23769]
Length = 242
Score = 180 bits (455), Expect = 2e-43, Method: Composition-based stats.
Identities = 116/242 (47%), Positives = 164/242 (67%), Gaps = 2/242 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR SGR + +R +S+ +++AEGS L++ G T +L A++E +VP ++R GW+T
Sbjct: 1 MRPSGRAIDALRPVSIQTGFARHAEGSALIRMGGTEVLCAASIESRVPPFLRGKGQGWVT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPR+T +R REA G+QGGR+ EIQR+I RALR+ +DL ALG I +DCDV+
Sbjct: 61 AEYGMLPRATHSRGPREAAKGKQGGRTHEIQRLIARALRAGIDLRALGEISITVDCDVLN 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTR AAITGAWVAL L + + + + VAA+SCG+ ++DLDY
Sbjct: 121 ADGGTRCAAITGAWVALRLALDGLVRAN--VIPALPITAQVAAVSCGLTGAGAVLDLDYA 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
EDS DANFV+T++G IVE+QG+AE+A FSQ+ F ++ LA+ A L ++Q+D ++
Sbjct: 179 EDSNAVADANFVLTETGGIVEIQGTAEQAPFSQEQFNELMRLAQVGTAQLFEIQRDAVAQ 238
Query: 241 EV 242
V
Sbjct: 239 AV 240
>gi|162329623|ref|YP_001218468.2| ribonuclease PH [Vibrio cholerae O395]
gi|262167372|ref|ZP_06035080.1| ribonuclease PH [Vibrio cholerae RC27]
gi|262024174|gb|EEY42867.1| ribonuclease PH [Vibrio cholerae RC27]
Length = 238
Score = 180 bits (455), Expect = 2e-43, Method: Composition-based stats.
Identities = 121/238 (50%), Positives = 163/238 (68%), Gaps = 2/238 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR R +Q+R I +TR + YAEGS LV+FG+T +L A++EE VP W++ GW+T
Sbjct: 1 MRPDNRAADQVRSIKITRHYTAYAEGSVLVEFGNTKVLCNASIEEGVPRWLKGQGKGWVT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPR+T +R +REA +G+QGGR+ EIQR+I R+LR+VVDL A+G I +DCDVIQ
Sbjct: 61 AEYGMLPRATHSRTRREATNGKQGGRTMEIQRLIARSLRAVVDLEAMGEIMITVDCDVIQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+ITGA VAL D H+ +KGHVAA+S G+L + DL+Y
Sbjct: 121 ADGGTRTASITGASVALADAFAHLIAK--GQLKKNPMKGHVAAVSVGILGEDVLCDLEYV 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
EDS D D N VMT+ G ++E+QG+AE FS + +L +AK IAD++ +QK +
Sbjct: 179 EDSAADTDMNVVMTEEGKMIEIQGTAEGEPFSHEQLLELLAVAKKGIADIVAVQKASL 236
>gi|261250540|ref|ZP_05943115.1| ribonuclease PH [Vibrio orientalis CIP 102891]
gi|323495223|ref|ZP_08100305.1| ribonuclease PH [Vibrio brasiliensis LMG 20546]
gi|260939109|gb|EEX95096.1| ribonuclease PH [Vibrio orientalis CIP 102891]
gi|323310483|gb|EGA63665.1| ribonuclease PH [Vibrio brasiliensis LMG 20546]
Length = 238
Score = 180 bits (455), Expect = 2e-43, Method: Composition-based stats.
Identities = 120/240 (50%), Positives = 165/240 (68%), Gaps = 2/240 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR + R+ +Q+R I +TR + YAEGS LV+FG+T +L AT+EE VP W++ GW+T
Sbjct: 1 MRPNDRKADQVRPIKITRNYTAYAEGSVLVEFGNTKVLCNATVEENVPRWLKGQGKGWVT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPRST +R++REA SG+QGGR+ EIQR+I R+LR+VVDL A+G + +DCDVIQ
Sbjct: 61 AEYGMLPRSTHSRMRREAASGKQGGRTMEIQRLIARSLRAVVDLEAMGEIMVTVDCDVIQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+I+GA VA+ D QH+ + + +KGHVAA+S G+L + DL+Y
Sbjct: 121 ADGGTRTASISGASVAMADAFQHLVEK--GKLKANPMKGHVAAVSVGILGEDILCDLEYT 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
EDS D D N VMT+ G ++EVQG+AE F+ +L A I +++ QK + N
Sbjct: 179 EDSAADTDMNVVMTEDGRMIEVQGTAEGEPFTHAELMKLLESATKGITEIVAAQKAALEN 238
>gi|146278691|ref|YP_001168850.1| ribonuclease PH [Rhodobacter sphaeroides ATCC 17025]
gi|166228309|sp|A4WVY1|RNPH_RHOS5 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|145556932|gb|ABP71545.1| RNAse PH [Rhodobacter sphaeroides ATCC 17025]
Length = 237
Score = 180 bits (455), Expect = 2e-43, Method: Composition-based stats.
Identities = 128/239 (53%), Positives = 175/239 (73%), Gaps = 2/239 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR SGR+ +QMR +S+ V K+AEGSCL++ G+TH+L +A++E+K P +++NT GW+T
Sbjct: 1 MRPSGRKLDQMRSVSIEPNVMKHAEGSCLIRMGETHVLCSASIEDKPPPFLKNTGLGWVT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPR+T +R +REA +G+Q GR+QEIQR+IGRALR+ +D SALG RQI+IDCDV+Q
Sbjct: 61 AEYGMLPRATTSRNRREATAGKQSGRTQEIQRLIGRALRAGIDRSALGERQIVIDCDVLQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTR A+ITG WVAL + + +S + HVAA+SCG+ G P++DLDY
Sbjct: 121 ADGGTRCASITGGWVALRLAVNKLLKA--GIVVSDPIVDHVAAVSCGIYAGQPVLDLDYA 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
EDST D NFV+T ++EVQ SAE A+FS+D +L+LA+ IADL+ QK +
Sbjct: 179 EDSTAGTDGNFVLTGRQRLIEVQMSAEGASFSRDEMGQLLDLAEAGIADLVAAQKAALG 237
>gi|315635018|ref|ZP_07890299.1| tRNA nucleotidyltransferase [Aggregatibacter segnis ATCC 33393]
gi|315476280|gb|EFU67031.1| tRNA nucleotidyltransferase [Aggregatibacter segnis ATCC 33393]
Length = 238
Score = 180 bits (455), Expect = 2e-43, Method: Composition-based stats.
Identities = 120/240 (50%), Positives = 163/240 (67%), Gaps = 2/240 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR + R +Q R I +TR +K+AEGS LV+FGDT +L TAT+E+ VP +++ GW+T
Sbjct: 1 MRPNQRANHQTRPIKITRHYTKHAEGSVLVEFGDTKVLCTATVEDGVPRFLKGQGQGWVT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPRST +R++REA G+QGGR+ EIQR+I R+LR++VDL ALG R + +DCDVIQ
Sbjct: 61 AEYGMLPRSTHSRMQREAAKGKQGGRTLEIQRLIARSLRAMVDLEALGERCVTLDCDVIQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+ITGA VAL D L + LKG VAAIS G++ G + DL+Y
Sbjct: 121 ADGGTRTASITGACVALCDALNGLVAN--GTLSKNPLKGLVAAISVGIVNGEAVCDLEYV 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
EDS + D N VM + G ++EVQG+AE FS + +L+LAK + + Q+ ++
Sbjct: 179 EDSAAETDMNVVMMEDGRMIEVQGTAEGEPFSHEELLTLLDLAKQGCEVIFQTQRAALAE 238
>gi|146337341|ref|YP_001202389.1| ribonuclease PH [Bradyrhizobium sp. ORS278]
gi|166228267|sp|A4YJR3|RNPH_BRASO RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|146190147|emb|CAL74139.1| RNase PH [Bradyrhizobium sp. ORS278]
Length = 237
Score = 180 bits (455), Expect = 2e-43, Method: Composition-based stats.
Identities = 137/239 (57%), Positives = 182/239 (76%), Gaps = 2/239 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR S R ++MR +SL R V KYAEGSCLVKFGDTH+L TATLE+++P W++ GWIT
Sbjct: 1 MRPSRRAPDEMRAVSLERGVVKYAEGSCLVKFGDTHVLVTATLEDRLPPWLKGQGRGWIT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPR+T R +REA +G+Q GR+ EIQR+IGR+LR+ +DL ALG RQI +DCDV+Q
Sbjct: 61 AEYGMLPRATLERTRREASAGKQTGRTVEIQRLIGRSLRTAIDLEALGERQITVDCDVLQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+ITGAWVAL DC++ M+ + ++VL+ +VAA+SCG+ G P++DLDY
Sbjct: 121 ADGGTRTASITGAWVALADCIRWMKARNM--IKTEVLRTNVAAVSCGIYNGTPVLDLDYA 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
EDS + DANFVMT G I+EVQG+AE+ FS+ F A++ LA+ + L+ LQK ++
Sbjct: 179 EDSEAETDANFVMTGDGRIIEVQGTAEKTPFSEAEFLALMALARKGVGRLVDLQKMAVA 237
>gi|319789115|ref|YP_004150748.1| ribonuclease PH [Thermovibrio ammonificans HB-1]
gi|317113617|gb|ADU96107.1| ribonuclease PH [Thermovibrio ammonificans HB-1]
Length = 234
Score = 180 bits (455), Expect = 2e-43, Method: Composition-based stats.
Identities = 126/240 (52%), Positives = 167/240 (69%), Gaps = 7/240 (2%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+R GR +Q+RE+ +T K+AEGSCL++FGDT ++ TA++EEKVP ++R T GWIT
Sbjct: 2 IRSDGRAPDQLREVKITLDYIKHAEGSCLIEFGDTKVICTASVEEKVPPFLRGTGQGWIT 61
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEY MLPR+T R+ REA G+ GR+QEIQR+IGR+LRS VDL+ALG I IDCDVIQ
Sbjct: 62 AEYAMLPRATAQRMVREAARGKLTGRTQEIQRLIGRSLRSAVDLTALGEVTIWIDCDVIQ 121
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+ITGA+VAL+ L+ ME ++ +AA+S G++ G ++DL+Y
Sbjct: 122 ADGGTRTASITGAFVALYRALEKMEKLEA-------VRSFLAAVSVGIVDGTVLLDLNYE 174
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
EDS +VD N VM + G EVQGSAE F++D MLNLA I +LI QK+V+
Sbjct: 175 EDSMAEVDMNVVMNEKGEFAEVQGSAEGRPFTRDELDRMLNLASKGIMELISKQKEVLKR 234
>gi|149184525|ref|ZP_01862843.1| RNase PH [Erythrobacter sp. SD-21]
gi|148831845|gb|EDL50278.1| RNase PH [Erythrobacter sp. SD-21]
Length = 238
Score = 180 bits (455), Expect = 2e-43, Method: Composition-based stats.
Identities = 118/237 (49%), Positives = 162/237 (68%), Gaps = 2/237 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR SGR ++MR I++ +K+AEGSCL+ FG+T +L TA++EE++P W+R GW+T
Sbjct: 1 MRPSGRAPDEMRAITIETGYTKHAEGSCLISFGETKVLCTASVEERIPPWLRGRGEGWVT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
EY MLPR+T R +REA G+Q GR+QEIQR+IGR+LR+VVD LG RQI +DCDVIQ
Sbjct: 61 GEYSMLPRATHTRGQREAAKGKQSGRTQEIQRLIGRSLRAVVDHKKLGERQITLDCDVIQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+I+GAWVAL + + + + VAA+SCG+ G P++DLDY
Sbjct: 121 ADGGTRTASISGAWVALRLAVNELMKS--GDLVEDPITAKVAAVSCGIYKGTPVLDLDYP 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
EDS D DANFV+ + G I E Q +AE A + ++ F +L LA+ AD+ + Q +
Sbjct: 179 EDSNADADANFVLIEGGKIAEAQATAEGAPYDEEAFLRLLRLAQMGCADIFRAQDEA 235
>gi|308174534|ref|YP_003921239.1| ribonuclease PH [Bacillus amyloliquefaciens DSM 7]
gi|307607398|emb|CBI43769.1| ribonuclease PH [Bacillus amyloliquefaciens DSM 7]
gi|328554456|gb|AEB24948.1| ribonuclease PH [Bacillus amyloliquefaciens TA208]
gi|328912859|gb|AEB64455.1| ribonuclease PH [Bacillus amyloliquefaciens LL3]
Length = 245
Score = 180 bits (455), Expect = 2e-43, Method: Composition-based stats.
Identities = 107/242 (44%), Positives = 150/242 (61%), Gaps = 1/242 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR GRQ +++R I+ + EGS L+ G+T ++ A++E++VP ++R GWIT
Sbjct: 1 MRHDGRQHDELRPITFDLDFITHPEGSVLITAGNTKVICNASVEDRVPPFLRGGGKGWIT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEY MLPR+T R RE+ G+ GR+ EIQR+IGRALR+VVDL LG R I IDCDVIQ
Sbjct: 61 AEYSMLPRATNQRTIRESSKGKVSGRTMEIQRLIGRALRAVVDLEKLGERTIWIDCDVIQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+ITGA++A+ + V A ++DL+Y
Sbjct: 121 ADGGTRTASITGAFLAMAIAAGKLVKSGVIKTSP-VTDYLAAISVGMDKEEGLLLDLNYE 179
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
EDS +VD N +MT SG VE+QG+ E ATFS++ +L+LA+ I LI+ QK+V+ +
Sbjct: 180 EDSAAEVDMNIIMTGSGRFVELQGTGEEATFSREDLNGLLSLAEKGIQTLIQKQKEVLGD 239
Query: 241 EV 242
+
Sbjct: 240 TL 241
>gi|83589383|ref|YP_429392.1| ribonuclease PH [Moorella thermoacetica ATCC 39073]
gi|123524979|sp|Q2RL40|RNPH_MOOTA RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|83572297|gb|ABC18849.1| RNAse PH [Moorella thermoacetica ATCC 39073]
Length = 250
Score = 180 bits (455), Expect = 2e-43, Method: Composition-based stats.
Identities = 123/240 (51%), Positives = 166/240 (69%), Gaps = 2/240 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+R +GR ++R +++ R KYAEGS L+ GDT ++ +AT+EEKVP +++NT GWIT
Sbjct: 2 LRANGRGLRELRPVTIERHYLKYAEGSALITVGDTRVICSATVEEKVPPFLKNTGKGWIT 61
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEY +LPRST R RE GR GR+QEIQR+IGR+LRSVVD+S LG R I +DCDV+Q
Sbjct: 62 AEYSLLPRSTKERTIREVTRGRLTGRTQEIQRLIGRSLRSVVDMSLLGERTIWLDCDVLQ 121
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTAAITG++VAL + L + + LK +AA+S G++ I+DLD+
Sbjct: 122 ADGGTRTAAITGSFVALAEALAGLVAAGGVPAM--PLKDFLAAVSVGLVDDELILDLDFQ 179
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
EDS VD N VMT SG +VEVQG+AE F+++ AML+LA + I LI +QK V+ +
Sbjct: 180 EDSHAGVDMNVVMTGSGQLVEVQGTAEGRPFTREQLTAMLDLAGEGIESLIAIQKQVLGD 239
>gi|307943385|ref|ZP_07658729.1| ribonuclease PH [Roseibium sp. TrichSKD4]
gi|307773015|gb|EFO32232.1| ribonuclease PH [Roseibium sp. TrichSKD4]
Length = 237
Score = 180 bits (455), Expect = 2e-43, Method: Composition-based stats.
Identities = 144/235 (61%), Positives = 184/235 (78%), Gaps = 2/235 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR S R +++R ++L R VSK+AEGSCLVKFGDTH+L TA+LEE+VP W+R + GW+T
Sbjct: 1 MRPSKRANDELRAVTLERGVSKHAEGSCLVKFGDTHVLCTASLEERVPPWLRGQQRGWVT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPR+TG+R++REA +G+Q GR+QEIQR+IGR+LR+VVDL ALG QI +DCDVIQ
Sbjct: 61 AEYGMLPRATGDRMRREASAGKQSGRTQEIQRLIGRSLRAVVDLEALGECQISVDCDVIQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTAAITG+WVAL DC++ M+ + K H+AAISCG+ G P++DLDY
Sbjct: 121 ADGGTRTAAITGSWVALRDCIEWMKARDMVKKDVL--KDHIAAISCGIHDGTPVLDLDYA 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
EDST + DANFVMT SG IVE+QG+AE A FS++ F ++ LAK I L+ LQK
Sbjct: 179 EDSTAETDANFVMTGSGGIVEIQGTAEGAPFSEEEFGQLMGLAKAGIGRLVDLQK 233
>gi|161525573|ref|YP_001580585.1| ribonuclease PH [Burkholderia multivorans ATCC 17616]
gi|189349699|ref|YP_001945327.1| ribonuclease PH [Burkholderia multivorans ATCC 17616]
gi|226736894|sp|A9AEQ7|RNPH_BURM1 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|160343002|gb|ABX16088.1| ribonuclease PH [Burkholderia multivorans ATCC 17616]
gi|189333721|dbj|BAG42791.1| ribonuclease PH [Burkholderia multivorans ATCC 17616]
Length = 246
Score = 180 bits (455), Expect = 2e-43, Method: Composition-based stats.
Identities = 130/238 (54%), Positives = 171/238 (71%), Gaps = 2/238 (0%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R SGR+ +++R+++LTR +K+AEGS LV+FGDT ++ TA++ E+VP ++R GW+TA
Sbjct: 7 RPSGRRADELRKVALTRHYTKHAEGSVLVEFGDTKVICTASVAERVPEFLRERGQGWLTA 66
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
EYGMLPR+T R REA G+Q GR+QEIQR+IGRALR+V DL ALG R I +DCDVIQA
Sbjct: 67 EYGMLPRATHTRSDREAARGKQTGRTQEIQRLIGRALRAVFDLEALGPRTIHLDCDVIQA 126
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
DGGTRTA+ITGA+VA HD + + + V HVAAIS G+ G P++DLDY E
Sbjct: 127 DGGTRTASITGAFVAAHDAVSTLLAAGKLERSPIV--DHVAAISVGVYEGTPVLDLDYAE 184
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
DS D D N VMT +G VEVQG+AE FS+ A+L+LA+ I L++LQKDV+
Sbjct: 185 DSRCDTDMNVVMTGAGGFVEVQGTAEGVPFSRAEMNALLDLAQSGIGTLVQLQKDVLG 242
>gi|92115321|ref|YP_575249.1| ribonuclease PH [Chromohalobacter salexigens DSM 3043]
gi|91798411|gb|ABE60550.1| RNAse PH [Chromohalobacter salexigens DSM 3043]
Length = 245
Score = 180 bits (455), Expect = 2e-43, Method: Composition-based stats.
Identities = 125/239 (52%), Positives = 160/239 (66%), Gaps = 2/239 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR SGRQ +Q REI+L R +++AEGS LV FGDT +L A++E VP W+R + GWIT
Sbjct: 6 MRPSGRQPDQPREITLERGYTRHAEGSVLVSFGDTKVLCNASVEAGVPRWLRGKQQGWIT 65
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPR+T R REA G+QGGR+ EIQR+IGR+LR+VVDL LG I +DCDVIQ
Sbjct: 66 AEYGMLPRATHTRGGREATRGKQGGRTLEIQRLIGRSLRTVVDLKKLGEFTITVDCDVIQ 125
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+ITG VAL D + K K V+++S G+ G P+VDLDY
Sbjct: 126 ADGGTRTASITGGCVALVDAI--HHLQREKLIKKDPFKQLVSSVSVGIFKGQPVVDLDYP 183
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
EDST D N VM + G ++EVQG+AE ATF++ AML+LA+ L Q++ +
Sbjct: 184 EDSTAGTDMNVVMAEDGGLIEVQGTAETATFTRQELNAMLDLAEGAGRQLFAHQREALG 242
>gi|145635181|ref|ZP_01790886.1| ribonuclease PH [Haemophilus influenzae PittAA]
gi|145267602|gb|EDK07601.1| ribonuclease PH [Haemophilus influenzae PittAA]
Length = 238
Score = 180 bits (455), Expect = 2e-43, Method: Composition-based stats.
Identities = 119/239 (49%), Positives = 166/239 (69%), Gaps = 2/239 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR + R+ NQ R+I +TR +K+AEGS LV+FGDT +L TAT+E+ VP +++ GW+T
Sbjct: 1 MRPNNRENNQPRQIKITRNYTKHAEGSVLVEFGDTKVLCTATVEDAVPRFLKGQGQGWVT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPRST +R++REA G+Q GR+ EIQR+I R+LR++VDL ALG R I +DCDVIQ
Sbjct: 61 AEYGMLPRSTHSRMQREAAKGKQSGRTMEIQRLIARSLRAMVDLKALGERAITLDCDVIQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+ITGA VAL D + + + + +KG V+AIS G++ G + DL+Y
Sbjct: 121 ADGGTRTASITGAAVALCDAINSLIEN--GTLKTNPIKGLVSAISVGIVDGQAVCDLEYV 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
EDS + D N VM + G ++EVQG+AE FS + +L+LAK + Q++V+
Sbjct: 179 EDSAAETDMNVVMMEDGRMIEVQGTAEGEPFSHEELLTLLDLAKQGCNQIFIAQREVLG 237
>gi|114798422|ref|YP_761988.1| ribonuclease PH [Hyphomonas neptunium ATCC 15444]
gi|114738596|gb|ABI76721.1| ribonuclease PH [Hyphomonas neptunium ATCC 15444]
Length = 241
Score = 180 bits (455), Expect = 2e-43, Method: Composition-based stats.
Identities = 115/239 (48%), Positives = 158/239 (66%), Gaps = 2/239 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+R +GR +++R ISL V++YAEGSCL KFG TH+L TA+ E+ VP W++ GW+T
Sbjct: 5 VRPTGRAFDELRPISLETSVTRYAEGSCLAKFGHTHVLCTASWEKGVPGWLKGKGEGWVT 64
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
EYGMLPR+T R +REA +G+Q GR+QEIQR+IGR+LRSVVDL ALG I IDCDVIQ
Sbjct: 65 GEYGMLPRATHTRGRREAAAGKQSGRTQEIQRLIGRSLRSVVDLKALGENTITIDCDVIQ 124
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+ITG +VAL +++ + + ++ AAIS G+ +P++D+DY
Sbjct: 125 ADGGTRTASITGGFVALAMACRYL--QTEGVIKASPIQKQAAAISVGLFQNHPVLDVDYP 182
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
EDS + D N VM+ G +EVQG+ E S+ M+ LA+ +L Q+ I
Sbjct: 183 EDSEGEADMNVVMSSDGGFIEVQGTGESRPMSRTELDEMMRLAEKGCNELFAAQRAAIG 241
>gi|300856830|ref|YP_003781814.1| ribonuclease PH [Clostridium ljungdahlii DSM 13528]
gi|300436945|gb|ADK16712.1| ribonuclease PH [Clostridium ljungdahlii DSM 13528]
Length = 248
Score = 179 bits (454), Expect = 2e-43, Method: Composition-based stats.
Identities = 112/239 (46%), Positives = 162/239 (67%), Gaps = 2/239 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR+ GR+ +Q+R I +TR +KYAEGS L++ GDT ++ TA++E++VP +++ GWIT
Sbjct: 1 MRIDGRKYDQIRPIKITRDYTKYAEGSVLIETGDTKVICTASIEDRVPPFLKGKGEGWIT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
EY MLPR+T R R+ G+ GR+ EIQR+IGRALRSVVDL A+G + I +DCDVIQ
Sbjct: 61 CEYNMLPRATQVRKIRDITKGKIDGRTMEIQRIIGRALRSVVDLKAMGEKTIWVDCDVIQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+I+GA+VAL D + + + ++ V+AIS G++ ++DL Y
Sbjct: 121 ADGGTRTASISGAFVALVDAVNKLHKRTPFTV--YPIRDFVSAISVGIVNNVRMLDLCYL 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
EDS VD N VMTDSG VE+QG+ E++ F++D +L L + I ++I QK+ +
Sbjct: 179 EDSRAQVDMNIVMTDSGEFVEIQGTGEQSPFTRDDLQELLRLGEKGINNMIHAQKESLK 237
>gi|145631050|ref|ZP_01786825.1| ribonuclease PH [Haemophilus influenzae R3021]
gi|144983335|gb|EDJ90817.1| ribonuclease PH [Haemophilus influenzae R3021]
Length = 238
Score = 179 bits (454), Expect = 2e-43, Method: Composition-based stats.
Identities = 118/239 (49%), Positives = 164/239 (68%), Gaps = 2/239 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR + R+ NQ R+I +TR +K+AEGS LV+FGDT +L TAT+E+ VP +++ GW+T
Sbjct: 1 MRPNNRENNQPRQIKITRNYTKHAEGSVLVEFGDTKVLCTATVEDAVPRFLKGQGQGWVT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPRST +R++REA G+Q GR+ EIQR+I R+LR++VDL ALG R I +DCDVIQ
Sbjct: 61 AEYGMLPRSTHSRMQREAAKGKQSGRTMEIQRLIARSLRAMVDLKALGERAITLDCDVIQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+ITGA VAL D + + + + +KG V+AIS G++ G + DL+Y
Sbjct: 121 ADGGTRTASITGAAVALCDAINGLIEN--GTLKTNPIKGLVSAISVGIVEGQAVCDLEYV 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
EDS + D N VM + G ++EVQG+AE FS + +L+LAK + Q+ +
Sbjct: 179 EDSAAETDMNVVMMEDGRMIEVQGTAEGEPFSHEELLTLLDLAKQGCNQIFIAQRKALG 237
>gi|84622697|ref|YP_450069.1| ribonuclease PH [Xanthomonas oryzae pv. oryzae MAFF 311018]
gi|161899009|ref|YP_199782.2| ribonuclease PH [Xanthomonas oryzae pv. oryzae KACC10331]
gi|188578263|ref|YP_001915192.1| ribonuclease PH [Xanthomonas oryzae pv. oryzae PXO99A]
gi|123522908|sp|Q2P6N2|RNPH_XANOM RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|226736951|sp|B2SLL1|RNPH_XANOP RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|84366637|dbj|BAE67795.1| Ribonuclease PH [Xanthomonas oryzae pv. oryzae MAFF 311018]
gi|188522715|gb|ACD60660.1| ribonuclease PH [Xanthomonas oryzae pv. oryzae PXO99A]
Length = 241
Score = 179 bits (454), Expect = 2e-43, Method: Composition-based stats.
Identities = 124/238 (52%), Positives = 162/238 (68%), Gaps = 2/238 (0%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R SGR +Q+R + + R +++AEGS LV FGDTH+L TA++E +VP ++R GW+TA
Sbjct: 5 RPSGRTADQLRPVRIERAFTRHAEGSVLVSFGDTHVLCTASVENRVPNFLRGKGEGWVTA 64
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
EYGMLPRST R REA G+QGGR+ EIQR+IGRALR+ VD +ALG R I +DCDV+QA
Sbjct: 65 EYGMLPRSTHTRSDREAARGKQGGRTLEIQRLIGRALRACVDRNALGERTITLDCDVLQA 124
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
DGGTRTAAITGA+VAL D + + L G VAA+S G+ G P++DLDY E
Sbjct: 125 DGGTRTAAITGAYVALADAVNLLLKR--GEIKKHPLIGAVAAVSVGIYRGEPVLDLDYPE 182
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
DS D D N VM D G +E+QG+AE F +D A+L LA+ + DL LQ+ ++
Sbjct: 183 DSDCDTDMNVVMNDGGGFIELQGTAEGHAFRRDELNALLALAEKGMGDLFALQRAALA 240
>gi|217420445|ref|ZP_03451950.1| tRNA nucleotidyltransferase [Burkholderia pseudomallei 576]
gi|238561030|ref|ZP_00442682.2| tRNA nucleotidyltransferase [Burkholderia mallei GB8 horse 4]
gi|251766543|ref|ZP_02264154.2| tRNA nucleotidyltransferase [Burkholderia mallei PRL-20]
gi|254196137|ref|ZP_04902562.1| ribonuclease PH [Burkholderia pseudomallei S13]
gi|254207704|ref|ZP_04914054.1| ribonuclease PH [Burkholderia mallei JHU]
gi|121229702|gb|ABM52220.1| ribonuclease PH [Burkholderia mallei SAVP1]
gi|147751598|gb|EDK58665.1| ribonuclease PH [Burkholderia mallei JHU]
gi|169652881|gb|EDS85574.1| ribonuclease PH [Burkholderia pseudomallei S13]
gi|217395857|gb|EEC35874.1| tRNA nucleotidyltransferase [Burkholderia pseudomallei 576]
gi|238525408|gb|EEP88836.1| tRNA nucleotidyltransferase [Burkholderia mallei GB8 horse 4]
gi|243065369|gb|EES47555.1| tRNA nucleotidyltransferase [Burkholderia mallei PRL-20]
Length = 295
Score = 179 bits (454), Expect = 2e-43, Method: Composition-based stats.
Identities = 124/239 (51%), Positives = 172/239 (71%), Gaps = 2/239 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+R SGR+ +Q+R++ +TR +K+AEG+ LV+FGDT ++ TA++ E+VP ++R GW+T
Sbjct: 58 LRPSGRRADQLRDVRITRHYTKHAEGAVLVEFGDTKVICTASVAERVPEFLRERGQGWLT 117
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPR+T R REA G+Q GR+QEIQR+IGRALR+V DL+ALG R + +DCDVIQ
Sbjct: 118 AEYGMLPRATHTRSDREAARGKQTGRTQEIQRLIGRALRAVFDLNALGPRTLHLDCDVIQ 177
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+ITGA+VA HD + + + + +VAAIS G+ G P++DLDY
Sbjct: 178 ADGGTRTASITGAFVAAHDAVTKLVAAGRIARS--PITDYVAAISVGVFGGTPVLDLDYD 235
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
EDS D D N VMT +G VEVQG+AE A FS+ A+L+LA+ I +L++LQ+ +
Sbjct: 236 EDSACDTDMNVVMTGAGGFVEVQGTAEGAPFSRTEMNALLDLAQAGIGELVRLQRAALE 294
>gi|154246476|ref|YP_001417434.1| ribonuclease PH [Xanthobacter autotrophicus Py2]
gi|226736952|sp|A7IID4|RNPH_XANP2 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|154160561|gb|ABS67777.1| ribonuclease PH [Xanthobacter autotrophicus Py2]
Length = 237
Score = 179 bits (454), Expect = 2e-43, Method: Composition-based stats.
Identities = 137/239 (57%), Positives = 178/239 (74%), Gaps = 2/239 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR S R ++MR +S R V ++AEGSCLVKFGDTH+L +ATLEE++P W++ GW+T
Sbjct: 1 MRPSKRAADEMRAVSFERGVMRHAEGSCLVKFGDTHVLVSATLEERLPPWLKGQGRGWVT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEY MLPR+T +R +RE+ +G+Q GR+QEIQR+IGR+LRSV DL ALG +QI +DCDV+Q
Sbjct: 61 AEYSMLPRATHDRTRRESTTGKQSGRTQEIQRLIGRSLRSVTDLVALGEKQITLDCDVLQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTAAITGAW+AL+DCL M S LK HVAA+SCG+ G P++DLDY
Sbjct: 121 ADGGTRTAAITGAWIALYDCLSWMRQRSM--VKEIPLKDHVAAVSCGIYNGTPVLDLDYA 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
EDS + DANFVMT +G IVE+QG+AE+ FSQD +L+LA+ + L+ LQK +
Sbjct: 179 EDSVAETDANFVMTGTGGIVEIQGTAEKTPFSQDELLGLLSLARSGVEKLVGLQKLAVG 237
>gi|325579215|ref|ZP_08149171.1| tRNA nucleotidyltransferase [Haemophilus parainfluenzae ATCC 33392]
gi|325159450|gb|EGC71584.1| tRNA nucleotidyltransferase [Haemophilus parainfluenzae ATCC 33392]
Length = 238
Score = 179 bits (454), Expect = 2e-43, Method: Composition-based stats.
Identities = 118/239 (49%), Positives = 163/239 (68%), Gaps = 2/239 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR + R+ +Q R I +TR +K+AEGS LV+FGDT +L TA+++E VP +++ GW+T
Sbjct: 1 MRPNNRENHQPRPIKITRNYTKHAEGSVLVEFGDTKVLCTASVDESVPRFLKGQNQGWVT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPRST +R++REA G+QGGR+ EIQR+I R+LR++VDL ALG R I +DCDVIQ
Sbjct: 61 AEYGMLPRSTHSRMQREAAKGKQGGRTMEIQRLIARSLRAMVDLEALGERSITLDCDVIQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+ITGA VAL D + + + +KG VAAIS G++ G + DL+Y
Sbjct: 121 ADGGTRTASITGAAVALCDAINGLIAN--GTLKTNPIKGLVAAISVGIVEGEAVCDLEYV 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
EDS + D N VM + G ++EVQG+AE FS + +L LAK + Q++ +
Sbjct: 179 EDSAAETDMNVVMMEDGRMIEVQGTAEGEPFSHEELLTLLGLAKQGCEQIFAAQREALG 237
>gi|254507299|ref|ZP_05119435.1| ribonuclease PH [Vibrio parahaemolyticus 16]
gi|219549759|gb|EED26748.1| ribonuclease PH [Vibrio parahaemolyticus 16]
Length = 240
Score = 179 bits (454), Expect = 2e-43, Method: Composition-based stats.
Identities = 120/240 (50%), Positives = 165/240 (68%), Gaps = 2/240 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR + R+ +Q+R I +TR + YAEGS LV+FG+T +L AT+EE VP W++ GW+T
Sbjct: 3 MRPNDRKADQVRPIKITRNYTAYAEGSVLVEFGNTKVLCNATVEENVPRWLKGQGKGWVT 62
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPRST +R++REA SG+QGGR+ EIQR+I R+LR+VVDL A+G + +DCDVIQ
Sbjct: 63 AEYGMLPRSTHSRMRREAASGKQGGRTMEIQRLIARSLRAVVDLEAMGEIMVTVDCDVIQ 122
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+I+GA VA+ D QH+ + + +KGHVAA+S G+L + DL+Y
Sbjct: 123 ADGGTRTASISGASVAMADAFQHLVEK--GKLKANPMKGHVAAVSVGILGEDILCDLEYT 180
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
EDS D D N VMT+ G ++EVQG+AE F+ +L A I +++ QK + N
Sbjct: 181 EDSAADTDMNVVMTEDGRMIEVQGTAEGEPFTHAELMKLLESATKGITEIVAAQKAALEN 240
>gi|145637126|ref|ZP_01792788.1| ribonuclease PH [Haemophilus influenzae PittHH]
gi|145640205|ref|ZP_01795789.1| ribonuclease PH [Haemophilus influenzae R3021]
gi|148825447|ref|YP_001290200.1| ribonuclease PH [Haemophilus influenzae PittEE]
gi|229846361|ref|ZP_04466469.1| ribonuclease PH [Haemophilus influenzae 7P49H1]
gi|166228284|sp|A5UAL6|RNPH_HAEIE RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|145269571|gb|EDK09512.1| ribonuclease PH [Haemophilus influenzae PittHH]
gi|145274791|gb|EDK14653.1| ribonuclease PH [Haemophilus influenzae 22.4-21]
gi|148715607|gb|ABQ97817.1| ribonuclease PH [Haemophilus influenzae PittEE]
gi|229810454|gb|EEP46172.1| ribonuclease PH [Haemophilus influenzae 7P49H1]
gi|309972566|gb|ADO95767.1| Ribonuclease PH [Haemophilus influenzae R2846]
Length = 238
Score = 179 bits (454), Expect = 3e-43, Method: Composition-based stats.
Identities = 119/239 (49%), Positives = 166/239 (69%), Gaps = 2/239 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR + R+ NQ R+I +TR +K+AEGS LV+FGDT +L TAT+E+ VP +++ GW+T
Sbjct: 1 MRPNNRENNQPRQIKITRNYTKHAEGSVLVEFGDTKVLCTATVEDAVPRFLKGQGQGWVT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPRST +R++REA G+QGGR+ EIQR+I R+LR++VDL ALG R I +DCDVIQ
Sbjct: 61 AEYGMLPRSTHSRMQREAAKGKQGGRTMEIQRLIARSLRAMVDLKALGERAITLDCDVIQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+ITGA VAL D + + + + +KG V+AIS G++ G + DL+Y
Sbjct: 121 ADGGTRTASITGAAVALCDAINSLIEN--GTLKTNPIKGLVSAISVGIVDGQAVCDLEYV 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
EDS + D N VM + G ++EVQG+AE FS + +L+LAK + Q++ +
Sbjct: 179 EDSAAETDMNVVMMEDGRMIEVQGTAEGEPFSHEELLTLLDLAKQGCNQIFIAQREALG 237
>gi|256846413|ref|ZP_05551870.1| ribonuclease ph [Fusobacterium sp. 3_1_36A2]
gi|256718182|gb|EEU31738.1| ribonuclease ph [Fusobacterium sp. 3_1_36A2]
Length = 434
Score = 179 bits (454), Expect = 3e-43, Method: Composition-based stats.
Identities = 110/241 (45%), Positives = 159/241 (65%), Gaps = 2/241 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+R GR+ N+ R+I +T+ ++ YAEGS L++ G+T ++ TA++ +KVP ++R T GW+T
Sbjct: 2 LREDGRKFNEERKIKITKNINIYAEGSVLIEVGNTKVICTASVTDKVPSFLRGTGKGWVT 61
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEY MLPR+T R REA G+ GR+ EIQR+IGRALR+ +DL LG R I IDCDVIQ
Sbjct: 62 AEYSMLPRATNERNPREASKGKLTGRTVEIQRLIGRALRASIDLEKLGERLITIDCDVIQ 121
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRT +ITG ++AL ++ + D + + VAAIS G + +VDL Y
Sbjct: 122 ADGGTRTTSITGGYIALALAIKKLLDEEILEENPLISN--VAAISVGKINSELMVDLKYS 179
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
ED +VD N +M G +EVQG+ E +TF++ +L+LA++ I LI+LQ +I+
Sbjct: 180 EDFAAEVDMNVIMNKKGEFIEVQGTGEESTFTRAELNQLLDLAENSIKRLIELQDKIINQ 239
Query: 241 E 241
E
Sbjct: 240 E 240
>gi|237756090|ref|ZP_04584666.1| ribonuclease PH [Sulfurihydrogenibium yellowstonense SS-5]
gi|237691740|gb|EEP60772.1| ribonuclease PH [Sulfurihydrogenibium yellowstonense SS-5]
Length = 257
Score = 179 bits (454), Expect = 3e-43, Method: Composition-based stats.
Identities = 116/239 (48%), Positives = 156/239 (65%), Gaps = 2/239 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR GR+ Q+R I +TR + YAEGS L++FG+T ++ TA++E+KVP +++ T GWIT
Sbjct: 1 MRPDGRKPAQLRPIKITRDFNIYAEGSVLIEFGNTKVIVTASVEDKVPPFLKGTGQGWIT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEY M+PR++ R RE V G GR+ EIQR+IGR+LR+ VDL LG + I IDCDVIQ
Sbjct: 61 AEYSMIPRASETRSLREVVRGSPSGRTHEIQRLIGRSLRAAVDLKKLGEKTIWIDCDVIQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTR A+ITGA++A+ D + + + LK +VAAIS G + ++DL+Y
Sbjct: 121 ADGGTRVASITGAFIAVADACIKLTKQN--LVKANPLKDYVAAISIGKVRNEIVLDLNYA 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
EDS VD N VMT G VE+ + E TFSQ+ F ML K I LIK+QK+ I
Sbjct: 179 EDSNAQVDMNLVMTGKGEFVEIGATGEENTFSQEDFNKMLEYGKSGIERLIKIQKEFIE 237
>gi|237741270|ref|ZP_04571751.1| ribonuclease ph [Fusobacterium sp. 4_1_13]
gi|229430802|gb|EEO41014.1| ribonuclease ph [Fusobacterium sp. 4_1_13]
Length = 434
Score = 179 bits (454), Expect = 3e-43, Method: Composition-based stats.
Identities = 110/241 (45%), Positives = 159/241 (65%), Gaps = 2/241 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+R GR+ N+ R+I +T+ ++ YAEGS L++ G+T ++ TA++ +KVP ++R T GW+T
Sbjct: 2 LREDGRKFNEERKIKITKNINIYAEGSVLIEVGNTKVICTASVTDKVPSFLRGTGKGWVT 61
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEY MLPR+T R REA G+ GR+ EIQR+IGRALR+ +DL LG R I IDCDVIQ
Sbjct: 62 AEYSMLPRATNERNPREASKGKLTGRTVEIQRLIGRALRASIDLEKLGERLITIDCDVIQ 121
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRT +ITG ++AL ++ + D + + VAAIS G + +VDL Y
Sbjct: 122 ADGGTRTTSITGGYIALALAIKKLLDEEILEENPLISN--VAAISVGKINSELMVDLKYS 179
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
ED +VD N +M G +EVQG+ E +TF++ +L+LA++ I LI+LQ +I+
Sbjct: 180 EDFAAEVDMNVIMNKKGEFIEVQGTGEESTFTRAELNQLLDLAENSIKRLIELQDKIINQ 239
Query: 241 E 241
E
Sbjct: 240 E 240
>gi|325524722|gb|EGD02709.1| ribonuclease PH [Burkholderia sp. TJI49]
Length = 246
Score = 179 bits (454), Expect = 3e-43, Method: Composition-based stats.
Identities = 131/238 (55%), Positives = 171/238 (71%), Gaps = 2/238 (0%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R SGR+ + +R+++LTR +K+AEGS LV+FGDT ++ TA++ E+VP ++R GW+TA
Sbjct: 7 RPSGRRADALRKVALTRHYTKHAEGSVLVEFGDTKVICTASVAERVPEFLRERGQGWLTA 66
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
EYGMLPR+T R REA G+Q GR+QEIQR+IGRALR+V DL ALG R I IDCDVIQA
Sbjct: 67 EYGMLPRATHTRSDREAARGKQTGRTQEIQRLIGRALRAVFDLEALGPRTIHIDCDVIQA 126
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
DGGTRTA+ITGA+VA HD + + + V HVAAIS G+ G P++DLDY E
Sbjct: 127 DGGTRTASITGAFVAAHDAVSKLIAAGKLERSPIV--DHVAAISVGVYEGTPVLDLDYAE 184
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
DS D D N VMT +G VEVQG+AE FS+ A+L+LA+ I +L++LQKDV+
Sbjct: 185 DSRCDTDMNVVMTGAGGFVEVQGTAEGVPFSRAEMNALLDLAQSGIGELVQLQKDVLG 242
>gi|239982007|ref|ZP_04704531.1| ribonuclease PH [Streptomyces albus J1074]
gi|291453857|ref|ZP_06593247.1| ribonuclease PH [Streptomyces albus J1074]
gi|291356806|gb|EFE83708.1| ribonuclease PH [Streptomyces albus J1074]
Length = 241
Score = 179 bits (454), Expect = 3e-43, Method: Composition-based stats.
Identities = 115/239 (48%), Positives = 153/239 (64%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R+ GR Q+R +++ R SK+AEGS LV FGDT +L TA+ E VP W + + GW+TA
Sbjct: 3 RIDGRTPAQLRPLTIERSWSKHAEGSVLVAFGDTKVLCTASFTEGVPRWRKGSGEGWVTA 62
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
EY MLPR+T R RE+V G+ GGR+ EI R+IGR+LR+V+D ALG I++DCDV+QA
Sbjct: 63 EYSMLPRATNTRGDRESVRGKIGGRTHEISRLIGRSLRAVIDYKALGENTIVLDCDVLQA 122
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
DGGTRTAAITGA+VAL D + + + L G VAA+S G++ P++DL Y E
Sbjct: 123 DGGTRTAAITGAYVALADAISWAQGKKIIKPGRKPLTGSVAAVSVGIVGSTPLLDLCYEE 182
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
D + D N V T G VEVQG+AE A F + A+L+L ADL K Q ++
Sbjct: 183 DVRAETDMNVVCTGDGRFVEVQGTAEGAPFDRTELDALLDLGATGCADLTKGQLAALAE 241
>gi|163732970|ref|ZP_02140414.1| ribonuclease PH [Roseobacter litoralis Och 149]
gi|161393505|gb|EDQ17830.1| ribonuclease PH [Roseobacter litoralis Och 149]
Length = 237
Score = 179 bits (454), Expect = 3e-43, Method: Composition-based stats.
Identities = 120/237 (50%), Positives = 169/237 (71%), Gaps = 2/237 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR SGR+ N+MR +S+ +K+AEGS L+K GDTH+L TAT+E++VP +I+ + GW+T
Sbjct: 1 MRPSGRELNEMRAVSIETGFTKHAEGSALIKIGDTHVLCTATIEDRVPPFIKGSGLGWVT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPR+T R++RE+ +G+QGGR+ EIQR+IGR+LR+ VD ALG RQI +DCDV+Q
Sbjct: 61 AEYGMLPRATNTRMRRESTAGKQGGRTVEIQRLIGRSLRAGVDRVALGERQITVDCDVLQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTR A+ITG W+AL + + + V VAAISCG+ G P++DLDY
Sbjct: 121 ADGGTRCASITGGWIALRLAVNKLMKAGDVISDPLV--DPVAAISCGIYAGQPVMDLDYP 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
EDS VD NF+MT + ++EVQ SAE +TFS+D +++LA+ + +L+ Q+
Sbjct: 179 EDSEAGVDGNFIMTGTKRLIEVQMSAEGSTFSRDQMNQLMDLAEKGVGELVTAQRAA 235
>gi|221201201|ref|ZP_03574241.1| ribonuclease PH [Burkholderia multivorans CGD2M]
gi|221206345|ref|ZP_03579358.1| ribonuclease PH [Burkholderia multivorans CGD2]
gi|221213625|ref|ZP_03586599.1| ribonuclease PH [Burkholderia multivorans CGD1]
gi|221166414|gb|EED98886.1| ribonuclease PH [Burkholderia multivorans CGD1]
gi|221173654|gb|EEE06088.1| ribonuclease PH [Burkholderia multivorans CGD2]
gi|221179051|gb|EEE11458.1| ribonuclease PH [Burkholderia multivorans CGD2M]
Length = 246
Score = 179 bits (454), Expect = 3e-43, Method: Composition-based stats.
Identities = 130/238 (54%), Positives = 171/238 (71%), Gaps = 2/238 (0%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R SGR+ +++R+++LTR +K+AEGS LV+FGDT ++ TA++ E+VP ++R GW+TA
Sbjct: 7 RPSGRRADELRKVALTRHYTKHAEGSVLVEFGDTKVICTASVAERVPEFLRERGQGWLTA 66
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
EYGMLPR+T R REA G+Q GR+QEIQR+IGRALR+V DL ALG R I +DCDVIQA
Sbjct: 67 EYGMLPRATHTRSDREAARGKQTGRTQEIQRLIGRALRAVFDLEALGPRTIHLDCDVIQA 126
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
DGGTRTA+ITGA+VA HD + + + V HVAAIS G+ G P++DLDY E
Sbjct: 127 DGGTRTASITGAFVAAHDAVSTLLAAGKLERSPIV--DHVAAISVGVYEGTPVLDLDYAE 184
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
DS D D N VMT +G VEVQG+AE FS+ A+L+LA+ I L++LQKDV+
Sbjct: 185 DSRCDTDMNVVMTGAGGFVEVQGTAEGVPFSRAEMDALLDLAQSGIGTLVQLQKDVLG 242
>gi|47168526|pdb|1OYS|A Chain A, Crystal Structure Of The Phosphorolytic Exoribonuclease
Rnase Ph From Bacillus Subtilis
Length = 245
Score = 179 bits (454), Expect = 3e-43, Method: Composition-based stats.
Identities = 107/243 (44%), Positives = 158/243 (65%), Gaps = 3/243 (1%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR GRQ +++R I+ + EGS L+ G+T ++ A++E++VP ++R GWIT
Sbjct: 1 MRHDGRQHDELRPITFDLDFISHPEGSVLITAGNTKVICNASVEDRVPPFLRGGGKGWIT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEY MLP++T + +E+ G+ GR+ EIQR+IGRALR+VVDL LG R I IDCDVIQ
Sbjct: 61 AEYSMLPQATNQQTIQESSKGKISGRTMEIQRLIGRALRAVVDLEKLGERTIWIDCDVIQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY-PIVDLDY 179
ADGGTRTA+ITGA++A+ + + + + +AAIS G+ ++DL+Y
Sbjct: 121 ADGGTRTASITGAFLAMAIAIGKLIKA--GTIKTNPITDFLAAISVGIDKEQGILLDLNY 178
Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
EDS+ +VD N +MT SG VE+QG+ E ATFS++ +L LA+ I +LI QK+V+
Sbjct: 179 EEDSSAEVDMNVIMTGSGRFVELQGTGEEATFSREDLNGLLGLAEKGIQELIDKQKEVLG 238
Query: 240 NEV 242
+ +
Sbjct: 239 DSL 241
>gi|332995822|gb|AEF05877.1| ribonuclease PH [Alteromonas sp. SN2]
Length = 237
Score = 179 bits (454), Expect = 3e-43, Method: Composition-based stats.
Identities = 120/239 (50%), Positives = 162/239 (67%), Gaps = 2/239 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR SGR NQ+R +++TR+ + +AEGS LV+FG+T +L AT+EE VP +++ GWIT
Sbjct: 1 MRPSGRTANQIRPVTITRQYTCHAEGSVLVEFGNTKVLCNATVEEGVPRFMKGQGKGWIT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEY MLPR+T R REA G+QGGR+ EIQR+I R+LR+ VDL LG I +DCDVIQ
Sbjct: 61 AEYSMLPRATHTRSGREAARGKQGGRTLEIQRLIARSLRAAVDLKLLGENTITLDCDVIQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+ITGA VAL D L +M + LK +AA+S G+ G PI DL+Y
Sbjct: 121 ADGGTRTASITGACVALVDALTYMRSK--GILKANPLKHMIAALSVGIYKGTPIADLEYT 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
EDS + D N VMT++G ++EVQG+AE F+ + ML +AK + +L +QK ++
Sbjct: 179 EDSVAETDMNIVMTETGKLIEVQGTAEGEPFAFEELDEMLTIAKHGLRELFDIQKAALA 237
>gi|148827427|ref|YP_001292180.1| ribonuclease PH [Haemophilus influenzae PittGG]
gi|166228285|sp|A5UG91|RNPH_HAEIG RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|148718669|gb|ABQ99796.1| ribonuclease PH [Haemophilus influenzae PittGG]
Length = 238
Score = 179 bits (454), Expect = 3e-43, Method: Composition-based stats.
Identities = 119/239 (49%), Positives = 165/239 (69%), Gaps = 2/239 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR + R+ NQ R+I +TR +K+AEGS LV+FGDT +L TAT+E+ VP +++ GW+T
Sbjct: 1 MRPNNRENNQPRQIKITRNYTKHAEGSVLVEFGDTKVLCTATVEDAVPRFLKGQGQGWVT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPRST +R++REA G+Q GR+ EIQR+I R+LR++VDL ALG R I +DCDVIQ
Sbjct: 61 AEYGMLPRSTHSRMQREAAKGKQSGRTMEIQRLIARSLRAMVDLKALGERAITLDCDVIQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+ITGA VAL D + + + + +KG V+AIS G++ G + DL+Y
Sbjct: 121 ADGGTRTASITGAAVALCDAINSLIEN--GTLKTNPIKGLVSAISVGIVEGQAVCDLEYV 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
EDS + D N VM + G ++EVQG+AE FS + +L+LAK + Q+ V+
Sbjct: 179 EDSAAETDMNVVMMEDGRMIEVQGTAEGEPFSHEELLTLLDLAKQGCNQIFIAQRKVLG 237
>gi|260582842|ref|ZP_05850627.1| ribonuclease PH [Haemophilus influenzae NT127]
gi|260094055|gb|EEW77958.1| ribonuclease PH [Haemophilus influenzae NT127]
Length = 238
Score = 179 bits (454), Expect = 3e-43, Method: Composition-based stats.
Identities = 118/239 (49%), Positives = 165/239 (69%), Gaps = 2/239 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR + R+ NQ R+I +TR +K+AEGS LV+FGDT +L TAT+E+ VP +++ GW+T
Sbjct: 1 MRPNNRENNQPRQIKITRNYTKHAEGSVLVEFGDTKVLCTATVEDAVPRFLKGQGQGWVT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPRST +R++REA G+Q GR+ EIQR+I R+LR++VDL ALG R I +DCDVIQ
Sbjct: 61 AEYGMLPRSTHSRMQREAAKGKQSGRTMEIQRLIARSLRAMVDLKALGERAITLDCDVIQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+ITGA VAL D + + + + +KG V+AIS G++ G + DL+Y
Sbjct: 121 ADGGTRTASITGAAVALCDAINSLIEN--GTLKTNPIKGLVSAISVGIVDGQAVCDLEYV 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
EDS + D N VM + G ++EVQG+AE FS + +L+LAK + Q++ +
Sbjct: 179 EDSAAETDMNVVMMEDGRMIEVQGTAEGEPFSHEELLILLDLAKQGCNQIFIAQREALG 237
>gi|311069329|ref|YP_003974252.1| ribonuclease PH [Bacillus atrophaeus 1942]
gi|310869846|gb|ADP33321.1| ribonuclease PH [Bacillus atrophaeus 1942]
Length = 245
Score = 179 bits (453), Expect = 3e-43, Method: Composition-based stats.
Identities = 107/240 (44%), Positives = 151/240 (62%), Gaps = 1/240 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR GRQ +++R I+ + EGS L+ G+T ++ A++E++VP ++R GWIT
Sbjct: 1 MRHDGRQHDELRPITFDLDFISHPEGSVLITAGNTKVICNASVEDRVPPFLRGEGKGWIT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEY MLPR+T R RE+ G+ GR+ EIQR+IGRALR+VVDL LG R I IDCDVIQ
Sbjct: 61 AEYSMLPRATNQRTIRESSKGKVTGRTMEIQRLIGRALRAVVDLEKLGERTIWIDCDVIQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+ITGA++A+ + + + + V A ++DL+Y
Sbjct: 121 ADGGTRTASITGAFLAMGIAIGKLVKSGVL-KKTPVTDFLAAISVGIDKEQGLLLDLNYT 179
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
EDS +VD N +MT SG VE+QG+ E ATFS++ +L+LA+ I +LI QK V+ +
Sbjct: 180 EDSAAEVDMNVIMTGSGRFVELQGTGEEATFSREDLDGLLSLAEKGIQELIDKQKAVLGD 239
>gi|301155568|emb|CBW15036.1| ribonuclease PH (pseudogene) [Haemophilus parainfluenzae T3T1]
Length = 238
Score = 179 bits (453), Expect = 3e-43, Method: Composition-based stats.
Identities = 117/239 (48%), Positives = 163/239 (68%), Gaps = 2/239 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR + R+ +Q R I +TR +K+AEGS LV+FGDT +L TA+++E VP +++ GW+T
Sbjct: 1 MRPNNRENHQPRPIKITRNYTKHAEGSVLVEFGDTKVLCTASVDESVPRFLKGQNQGWVT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPRST +R++REA G+QGGR+ EIQR+I R+LR++VDL ALG R I +DCDVIQ
Sbjct: 61 AEYGMLPRSTHSRMQREAAKGKQGGRTMEIQRLIARSLRAMVDLEALGERSITLDCDVIQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+ITGA VAL D + + + +KG +AAIS G++ G + DL+Y
Sbjct: 121 ADGGTRTASITGAAVALCDAINGLIAN--GTLKTNPIKGLIAAISVGIVEGEAVCDLEYV 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
EDS + D N VM + G ++EVQG+AE FS + +L LAK + Q++ +
Sbjct: 179 EDSAAETDMNVVMMEDGRMIEVQGTAEGEPFSHEELLTLLGLAKQGCEQIFAAQREALG 237
>gi|145632517|ref|ZP_01788251.1| ribonuclease PH [Haemophilus influenzae 3655]
gi|144986712|gb|EDJ93264.1| ribonuclease PH [Haemophilus influenzae 3655]
Length = 238
Score = 179 bits (453), Expect = 3e-43, Method: Composition-based stats.
Identities = 119/239 (49%), Positives = 165/239 (69%), Gaps = 2/239 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR + R+ NQ R+I +TR +K+AEGS LV+FGDT +L TAT+E+ VP +++ GW+T
Sbjct: 1 MRPNNRENNQPRQIKITRNYTKHAEGSVLVEFGDTKVLCTATVEDAVPRFLKGQGQGWVT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPRST +R++REA G+QGGR+ EIQR+I R+LR++VDL ALG R I +DCDVIQ
Sbjct: 61 AEYGMLPRSTHSRMQREAAKGKQGGRTMEIQRLIARSLRAMVDLKALGERAITLDCDVIQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+ITGA VAL D + + + +KG V+AIS G++ G + DL+Y
Sbjct: 121 ADGGTRTASITGAAVALCDAINSLIEN--GTLKINPIKGLVSAISVGIVDGQAVCDLEYV 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
EDS + D N VM + G ++EVQG+AE FS + +L+LAK + Q++ +
Sbjct: 179 EDSAAETDMNVVMMEDGRMIEVQGTAEGEPFSHEELLTLLDLAKQGCNQIFIAQREALG 237
>gi|294627116|ref|ZP_06705704.1| ribonuclease PH [Xanthomonas fuscans subsp. aurantifolii str. ICPB
11122]
gi|325918115|ref|ZP_08180270.1| RNAse PH [Xanthomonas vesicatoria ATCC 35937]
gi|325922286|ref|ZP_08184067.1| RNAse PH [Xanthomonas gardneri ATCC 19865]
gi|292598549|gb|EFF42698.1| ribonuclease PH [Xanthomonas fuscans subsp. aurantifolii str. ICPB
11122]
gi|325535661|gb|EGD07502.1| RNAse PH [Xanthomonas vesicatoria ATCC 35937]
gi|325547239|gb|EGD18312.1| RNAse PH [Xanthomonas gardneri ATCC 19865]
Length = 241
Score = 179 bits (453), Expect = 3e-43, Method: Composition-based stats.
Identities = 122/238 (51%), Positives = 161/238 (67%), Gaps = 2/238 (0%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R SGR +Q+R + + R +++AEGS LV FGDT +L TA++E +VP ++R GW+TA
Sbjct: 5 RPSGRTADQLRPVRIERAFTRHAEGSVLVSFGDTRVLCTASVENRVPGFLRGKGEGWVTA 64
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
EYGMLPRST R REA G+QGGR+ EIQR+IGRALR+ VD +ALG R I +DCDV+QA
Sbjct: 65 EYGMLPRSTHTRSDREAARGKQGGRTLEIQRLIGRALRACVDRNALGERTITLDCDVLQA 124
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
DGGTRTAAITGA+VAL D + + L G VAA+S G+ G P++DLDY E
Sbjct: 125 DGGTRTAAITGAYVALADAVNLLLKR--GDIKKHPLIGAVAAVSVGIYRGEPVLDLDYPE 182
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
DS D D N VM D G +E+QG+AE F +D A+L LA+ + +L LQ+ ++
Sbjct: 183 DSDCDTDMNVVMNDGGGFIELQGTAEGHAFRRDELNALLALAEKGMGELFALQRAALA 240
>gi|56461525|ref|YP_156806.1| RNase PH [Idiomarina loihiensis L2TR]
gi|61215805|sp|Q5QYL5|RNPH_IDILO RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|56180535|gb|AAV83257.1| RNase PH [Idiomarina loihiensis L2TR]
Length = 237
Score = 179 bits (453), Expect = 3e-43, Method: Composition-based stats.
Identities = 121/239 (50%), Positives = 163/239 (68%), Gaps = 2/239 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR SGR Q+R +++TR +K+AEGS L++FG+T +L A++E VP +++ GW+T
Sbjct: 1 MRPSGRTAQQIRPVTITRNFTKHAEGSVLIEFGETKVLCNASVERGVPRFLKGKGQGWVT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEY MLPR+T R REA G+QGGR+ EIQR+IGR+LR+ +D+SALG I IDCDVIQ
Sbjct: 61 AEYSMLPRATHTRSAREASRGKQGGRTLEIQRLIGRSLRTCIDMSALGEHTITIDCDVIQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+ITGA VAL D L M LK VAAIS G+L G P+ DL+Y
Sbjct: 121 ADGGTRTASITGACVALVDALNWMRAQ--GMVKVNPLKEMVAAISVGILDGEPVSDLEYI 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
EDS D D N VMT++G +E+QG+AE FS D +++ +A+ I +LI +QK ++
Sbjct: 179 EDSKADTDMNIVMTEAGKFIEIQGTAEGEAFSFDEMNSLVEMARHSIRELIDIQKQALA 237
>gi|58425360|gb|AAW74397.1| ribonuclease PH [Xanthomonas oryzae pv. oryzae KACC10331]
Length = 305
Score = 179 bits (453), Expect = 3e-43, Method: Composition-based stats.
Identities = 124/238 (52%), Positives = 162/238 (68%), Gaps = 2/238 (0%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R SGR +Q+R + + R +++AEGS LV FGDTH+L TA++E +VP ++R GW+TA
Sbjct: 69 RPSGRTADQLRPVRIERAFTRHAEGSVLVSFGDTHVLCTASVENRVPNFLRGKGEGWVTA 128
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
EYGMLPRST R REA G+QGGR+ EIQR+IGRALR+ VD +ALG R I +DCDV+QA
Sbjct: 129 EYGMLPRSTHTRSDREAARGKQGGRTLEIQRLIGRALRACVDRNALGERTITLDCDVLQA 188
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
DGGTRTAAITGA+VAL D + + L G VAA+S G+ G P++DLDY E
Sbjct: 189 DGGTRTAAITGAYVALADAVNLLLKR--GEIKKHPLIGAVAAVSVGIYRGEPVLDLDYPE 246
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
DS D D N VM D G +E+QG+AE F +D A+L LA+ + DL LQ+ ++
Sbjct: 247 DSDCDTDMNVVMNDGGGFIELQGTAEGHAFRRDELNALLALAEKGMGDLFALQRAALA 304
>gi|91774399|ref|YP_544155.1| ribonuclease PH [Methylobacillus flagellatus KT]
gi|122399230|sp|Q1GXA4|RNPH_METFK RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|91708386|gb|ABE48314.1| RNAse PH [Methylobacillus flagellatus KT]
Length = 238
Score = 179 bits (453), Expect = 3e-43, Method: Composition-based stats.
Identities = 131/239 (54%), Positives = 167/239 (69%), Gaps = 2/239 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR S R +Q+RE+ + R +K+AEGS LVKFGDTH+L TA++E+KVP ++R GW T
Sbjct: 1 MRPSNRAPDQLREVEIIRHYTKHAEGSVLVKFGDTHVLCTASVEDKVPPFLRGRNQGWTT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPRSTG+R+ REA G+Q GR+QEIQR+IGR+LR+V+DL LG R I +DCDVIQ
Sbjct: 61 AEYGMLPRSTGSRMDREAARGKQSGRTQEIQRLIGRSLRAVIDLGKLGERTIHLDCDVIQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+ITGA+VALHD + M + L+ VAAIS G+ G P++DLDY
Sbjct: 121 ADGGTRTASITGAYVALHDAVGFMLANDMIQES--PLRDAVAAISVGVYQGTPVLDLDYI 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
EDS D D N VMT SG VE+QG+AE F + ML LA+ I L+ QK+ +
Sbjct: 179 EDSACDTDMNVVMTGSGGFVEIQGTAEGEPFQRAAMNRMLELAESGIRTLLLKQKEALG 237
>gi|331007601|ref|ZP_08330748.1| Ribonuclease PH [gamma proteobacterium IMCC1989]
gi|330418594|gb|EGG93113.1| Ribonuclease PH [gamma proteobacterium IMCC1989]
Length = 239
Score = 179 bits (453), Expect = 3e-43, Method: Composition-based stats.
Identities = 123/239 (51%), Positives = 158/239 (66%), Gaps = 2/239 (0%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R SGR +Q R I LT+ +K+AEGS L++FG+T ++ TA++E VP ++R GWITA
Sbjct: 3 RPSGRTPDQTRPIRLTKNFTKHAEGSVLIEFGETKVICTASIENSVPGFLRGQGKGWITA 62
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
EYGMLPRST +R+ REA G+Q GR+ EIQR+IGR+LR+ VDL LG R I IDCDVIQA
Sbjct: 63 EYGMLPRSTHSRMNREAARGKQTGRTVEIQRLIGRSLRAAVDLEVLGERTITIDCDVIQA 122
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
DGGTRTA+ITGA VAL D L + L +A+IS G+ G ++DLDY E
Sbjct: 123 DGGTRTASITGACVALADALNKLLAN--GTLKQNPLTRMIASISVGIYQGEAVLDLDYPE 180
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
DS+ D D N VM D G ++EVQG+AE FS+ F ML LAK I +L Q ++
Sbjct: 181 DSSADTDMNIVMADDGGMIEVQGTAEGEPFSEAEFMQMLTLAKKGIKELNAAQLACLAE 239
>gi|254491824|ref|ZP_05105003.1| ribonuclease PH [Methylophaga thiooxidans DMS010]
gi|224463302|gb|EEF79572.1| ribonuclease PH [Methylophaga thiooxydans DMS010]
Length = 239
Score = 179 bits (453), Expect = 3e-43, Method: Composition-based stats.
Identities = 125/240 (52%), Positives = 175/240 (72%), Gaps = 2/240 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR SGRQ N++R++S+TR +K+AEGS LV+FGDT +L TA++EE++P ++R + GW+T
Sbjct: 1 MRPSGRQANELRQVSITRNYTKHAEGSVLVEFGDTKVLCTASVEERIPPFLRGSGEGWVT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPRSTG+R++REA G+QGGR+ EIQR+IGR+LR+ ++L ALG R I IDCDVIQ
Sbjct: 61 AEYGMLPRSTGSRMQREAARGKQGGRTMEIQRLIGRSLRAAINLKALGERSITIDCDVIQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+ITGA+VAL D + H+ + + VA++S G+ G P++DLDY
Sbjct: 121 ADGGTRTASITGAFVALQDAINHLIKTKKLKKSPLFGQ--VASVSVGIYNGTPVLDLDYD 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
EDS+ + D N VM D+G +E+QG+AE F D +ML+LA I L+ Q+D ++
Sbjct: 179 EDSSAETDMNVVMNDAGAYIELQGTAEGHAFRADELQSMLDLASHGIEQLMIKQRDALAE 238
>gi|78049070|ref|YP_365245.1| ribonuclease PH [Xanthomonas campestris pv. vesicatoria str. 85-10]
gi|325927895|ref|ZP_08189119.1| RNAse PH [Xanthomonas perforans 91-118]
gi|123584287|sp|Q3BPR8|RNPH_XANC5 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|78037500|emb|CAJ25245.1| ribonuclease PH [Xanthomonas campestris pv. vesicatoria str. 85-10]
gi|325541735|gb|EGD13253.1| RNAse PH [Xanthomonas perforans 91-118]
Length = 241
Score = 179 bits (453), Expect = 3e-43, Method: Composition-based stats.
Identities = 122/238 (51%), Positives = 161/238 (67%), Gaps = 2/238 (0%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R SGR +Q+R + + R +++AEGS LV FGDT +L TA++E +VP ++R GW+TA
Sbjct: 5 RPSGRTADQLRPVRIERAFTRHAEGSVLVSFGDTRVLCTASVENRVPGFLRGKGEGWVTA 64
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
EYGMLPRST R REA G+QGGR+ EIQR+IGRALR+ VD +ALG R I +DCDV+QA
Sbjct: 65 EYGMLPRSTHTRSDREAARGKQGGRTLEIQRLIGRALRACVDRNALGERTITLDCDVLQA 124
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
DGGTRTAAITGA+VAL D + + L G VAA+S G+ G P++DLDY E
Sbjct: 125 DGGTRTAAITGAYVALADAVNLLIKR--GDIKKHPLIGAVAAVSVGIYRGEPVLDLDYPE 182
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
DS D D N VM D G +E+QG+AE F +D A+L LA+ + +L LQ+ ++
Sbjct: 183 DSDCDTDMNVVMNDGGGFIELQGTAEGHAFRRDELNALLALAEKGMGELFALQRAALA 240
>gi|302391286|ref|YP_003827106.1| RNAse PH [Acetohalobium arabaticum DSM 5501]
gi|302203363|gb|ADL12041.1| RNAse PH [Acetohalobium arabaticum DSM 5501]
Length = 251
Score = 179 bits (453), Expect = 4e-43, Method: Composition-based stats.
Identities = 114/241 (47%), Positives = 164/241 (68%), Gaps = 2/241 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR+ GR +++RE+++TR +KYAEGS L+ GDT ++ A++EE VP ++R+ GWIT
Sbjct: 1 MRVDGRDRDELREVTITRDFTKYAEGSILISTGDTKVICNASVEESVPYFLRDQGQGWIT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
EY MLPR+T +R R A G+ GR++EIQR+IGRA+RSV+DL LG R I +DCDVIQ
Sbjct: 61 GEYAMLPRATESRNIRAAAKGKISGRTKEIQRLIGRAMRSVIDLDKLGERTIWLDCDVIQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+ITGA+VAL D L ++ + +K +AA S G++ G P +DL Y
Sbjct: 121 ADGGTRTASITGAFVALIDALDYLLEKD--KIDEMPVKSFIAATSVGIIDGAPALDLCYK 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
EDS+ VD N VMT+ G I+E+QG+ E F+Q ++ L + I +LI+ QK+ + +
Sbjct: 179 EDSSAQVDLNLVMTEEGRIIEIQGTGEENPFTQQELDKLVELGEKGIKELIRYQKEALGD 238
Query: 241 E 241
+
Sbjct: 239 K 239
>gi|303241597|ref|ZP_07328096.1| ribonuclease PH [Acetivibrio cellulolyticus CD2]
gi|302590817|gb|EFL60566.1| ribonuclease PH [Acetivibrio cellulolyticus CD2]
Length = 282
Score = 179 bits (453), Expect = 4e-43, Method: Composition-based stats.
Identities = 117/240 (48%), Positives = 167/240 (69%), Gaps = 2/240 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+R+ GR+++ +R++ +TR K+AEGS L++ GDT ++ TA++++KVP + +N+ GW+T
Sbjct: 25 LRIDGREKSNLRKVKITRNYIKHAEGSVLIEMGDTKVICTASVDDKVPPFKKNSGEGWVT 84
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEY MLPRSTG R +R+ + GRSQEIQR+IGRALRSVV+ ALG R IIIDCDVIQ
Sbjct: 85 AEYSMLPRSTGVRNQRDISKLKLNGRSQEIQRLIGRALRSVVNFHALGERAIIIDCDVIQ 144
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+ITGA+VA+ D + + + + VAA+S G++ ++DL YG
Sbjct: 145 ADGGTRTASITGAFVAMVDACKKLVED--GVIEKIPITDMVAAVSVGIIGDEEMLDLCYG 202
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
EDS VD N VMT SG +EVQ + E++ F +D +L+LA+ I +LI +QKDV+
Sbjct: 203 EDSNAVVDMNVVMTSSGEFIEVQATGEQSPFRRDQLNKLLDLAEVGIKELISIQKDVLGQ 262
>gi|16272231|ref|NP_438442.1| ribonuclease PH [Haemophilus influenzae Rd KW20]
gi|68248879|ref|YP_247991.1| ribonuclease PH [Haemophilus influenzae 86-028NP]
gi|229844976|ref|ZP_04465113.1| ribonuclease PH [Haemophilus influenzae 6P18H1]
gi|260580844|ref|ZP_05848669.1| ribonuclease PH [Haemophilus influenzae RdAW]
gi|319896608|ref|YP_004134801.1| ribonuclease ph [Haemophilus influenzae F3031]
gi|1173102|sp|P44444|RNPH_HAEIN RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|81336705|sp|Q4QNR6|RNPH_HAEI8 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|1573239|gb|AAC21939.1| ribonuclease PH (rph) [Haemophilus influenzae Rd KW20]
gi|68057078|gb|AAX87331.1| ribonuclease PH [Haemophilus influenzae 86-028NP]
gi|229812110|gb|EEP47802.1| ribonuclease PH [Haemophilus influenzae 6P18H1]
gi|260092467|gb|EEW76405.1| ribonuclease PH [Haemophilus influenzae RdAW]
gi|317432110|emb|CBY80461.1| ribonuclease PH [Haemophilus influenzae F3031]
Length = 238
Score = 179 bits (453), Expect = 4e-43, Method: Composition-based stats.
Identities = 119/239 (49%), Positives = 166/239 (69%), Gaps = 2/239 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR + R+ NQ R+I +TR +K+AEGS LV+FGDT +L TAT+E+ VP +++ GW+T
Sbjct: 1 MRPNNRENNQPRQIKITRNYTKHAEGSVLVEFGDTKVLCTATVEDAVPRFLKGQGQGWVT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPRST +R++REA G+QGGR+ EIQR+I R+LR++VDL ALG R I +DCDVIQ
Sbjct: 61 AEYGMLPRSTHSRMQREAAKGKQGGRTMEIQRLIARSLRAMVDLKALGERAITLDCDVIQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+ITGA VAL D + + + + +KG V+AIS G++ G + DL+Y
Sbjct: 121 ADGGTRTASITGAAVALCDAINGLIEN--GTLKTNPIKGLVSAISVGIVDGQAVCDLEYV 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
EDS + D N VM + G ++EVQG+AE FS + +L+LAK + Q++ +
Sbjct: 179 EDSAAETDMNVVMMEDGRMIEVQGTAEGEPFSHEELLTLLDLAKQGCNQIFIAQREALG 237
>gi|227115107|ref|ZP_03828763.1| ribonuclease PH [Pectobacterium carotovorum subsp. brasiliensis
PBR1692]
Length = 238
Score = 179 bits (453), Expect = 4e-43, Method: Composition-based stats.
Identities = 117/238 (49%), Positives = 159/238 (66%), Gaps = 2/238 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR +GR Q+R ++ TR +K+AEGS LV+FGDT +L AT+EE VP +++ GW+T
Sbjct: 1 MRPTGRSAQQVRPLTFTRHYTKHAEGSVLVEFGDTKVLCNATVEEGVPRFLKGQGQGWVT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPR+T +R REA G+QGGR+ EIQR+I R+LR+ +DL LG I +DCDV+Q
Sbjct: 61 AEYGMLPRATHSRNSREAAKGKQGGRTLEIQRLIARSLRAAIDLKVLGEYTITLDCDVLQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+ITGA VAL D L M +KG +AA+S G++ G + DL+Y
Sbjct: 121 ADGGTRTASITGACVALADALNQMVAK--GKLKKNPMKGMIAAVSVGIVNGEALCDLEYV 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
EDS + D N VMT+ G ++EVQG+AE FS D +L LA+ I +++ QK +
Sbjct: 179 EDSAAETDMNVVMTEDGRMIEVQGTAEGEPFSHDELLTLLALARGGIDTIVQAQKAAL 236
>gi|153830706|ref|ZP_01983373.1| ribonuclease PH [Vibrio cholerae 623-39]
gi|148873826|gb|EDL71961.1| ribonuclease PH [Vibrio cholerae 623-39]
Length = 257
Score = 179 bits (453), Expect = 4e-43, Method: Composition-based stats.
Identities = 121/238 (50%), Positives = 163/238 (68%), Gaps = 2/238 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR R +Q+R I +TR + YAEGS LV+FG+T +L A++EE VP W++ GW+T
Sbjct: 20 MRPDNRAADQVRPIKITRHYTAYAEGSVLVEFGNTKVLCNASIEEGVPRWLKGQGKGWVT 79
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPR+T +R +REA +G+QGGR+ EIQR+I R+LR+VVDL A+G I +DCDVIQ
Sbjct: 80 AEYGMLPRATHSRTRREATNGKQGGRTMEIQRLIARSLRAVVDLEAMGEIMITVDCDVIQ 139
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+ITGA VAL D H+ +KGHVAA+S G+L G + DL+Y
Sbjct: 140 ADGGTRTASITGASVALADAFTHLIAK--GQLKKNPMKGHVAAVSVGILGGDVLCDLEYV 197
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
EDS D D N VMT+ G ++E+QG+AE F + +L +AK IAD++ +QK +
Sbjct: 198 EDSAADTDMNVVMTEEGKMIEIQGTAEGEPFCHEQLLELLAVAKKGIADIVAVQKASL 255
>gi|220932375|ref|YP_002509283.1| ribonuclease PH [Halothermothrix orenii H 168]
gi|219993685|gb|ACL70288.1| ribonuclease PH [Halothermothrix orenii H 168]
Length = 246
Score = 179 bits (453), Expect = 4e-43, Method: Composition-based stats.
Identities = 113/239 (47%), Positives = 166/239 (69%), Gaps = 2/239 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+R+ GR+ +Q+R++ ++R+ +KYAEGS L++ GDT ++ TA++EE VP ++R GW+T
Sbjct: 7 LRVDGRKNDQLRDVKISRQYTKYAEGSVLIETGDTKVICTASVEESVPPFLRGQNTGWLT 66
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEY +LPRST +R RE GR GR+QEIQR+IGR+LR+VVDL LG R I +DCDVIQ
Sbjct: 67 AEYSLLPRSTHSRTIREVARGRLSGRTQEIQRLIGRSLRAVVDLGKLGERTIWVDCDVIQ 126
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+ITGA+VAL D + ++ + + L +AA S G++ G ++DL Y
Sbjct: 127 ADGGTRTASITGAYVALVDAINYLIEEGVLEES--PLNSFMAATSVGVVDGEMLLDLCYE 184
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
ED VD N VMT+ G ++E+QG+AE+ FS+D +++LA+ I +L+ QK +
Sbjct: 185 EDFQAQVDMNIVMTEDGRVIEIQGTAEKFPFSRDQMNTLMDLAEKGIRELVSFQKKSLG 243
>gi|253991850|ref|YP_003043206.1| ribonuclease PH [Photorhabdus asymbiotica subsp. asymbiotica ATCC
43949]
gi|253783300|emb|CAQ86465.1| ribonuclease ph [Photorhabdus asymbiotica]
Length = 237
Score = 179 bits (453), Expect = 4e-43, Method: Composition-based stats.
Identities = 118/239 (49%), Positives = 157/239 (65%), Gaps = 2/239 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR +GR Q+R I++TR +K+AEGS LV+FGDT +L A++EE VP +++ GWIT
Sbjct: 1 MRPAGRAAEQVRPITITRHYTKHAEGSVLVEFGDTKVLCNASVEEGVPRFLKGQGQGWIT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPRST +R REA G+QGGR+ EIQR+I R+LR+ VDL LG + +DCDVIQ
Sbjct: 61 AEYGMLPRSTHSRNAREAARGKQGGRTMEIQRLIARSLRAAVDLKKLGEYTVTLDCDVIQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+ITGA VAL D L M + LK VAA+S G++ DL+Y
Sbjct: 121 ADGGTRTASITGACVALVDALNKMVEA--GKLKENPLKSMVAAVSVGIVDNEGRCDLEYV 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
EDS + D N VM + G ++EVQG+AE FS D ++L+LAK + + Q+ +
Sbjct: 179 EDSAAETDMNVVMMEDGRMIEVQGTAEGEPFSHDELLSLLSLAKGGLETIFAAQRTALK 237
>gi|301168926|emb|CBW28521.1| ribonuclease PH (pseudogene) [Haemophilus influenzae 10810]
Length = 238
Score = 178 bits (452), Expect = 4e-43, Method: Composition-based stats.
Identities = 119/239 (49%), Positives = 165/239 (69%), Gaps = 2/239 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR + R+ NQ R+I +TR +K+AEGS LV+FGDT +L TAT+E+ VP +++ GW+T
Sbjct: 1 MRPNNRENNQPRQIKITRNYTKHAEGSVLVEFGDTKVLCTATVEDAVPRFLKGQGQGWVT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPRST +R++REA G+QGGR+ EIQR+I R+LR++VDL ALG R I +DCDVIQ
Sbjct: 61 AEYGMLPRSTHSRMQREAAKGKQGGRTMEIQRLIARSLRAMVDLKALGERAITLDCDVIQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+ITGA VAL D + + + + +KG V+AIS G++ G + DL+Y
Sbjct: 121 ADGGTRTASITGAAVALCDAINGLIEN--GTLKTNPIKGLVSAISVGIVDGQAVCDLEYV 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
EDS + D N VM + G ++EVQG+AE FS + +L+LAK + Q+ +
Sbjct: 179 EDSAAETDMNVVMMEDGRMIEVQGTAEGEPFSHEELLTLLDLAKQGCNQIFIAQRKALG 237
>gi|312795401|ref|YP_004028323.1| ribonuclease PH [Burkholderia rhizoxinica HKI 454]
gi|312167176|emb|CBW74179.1| Ribonuclease PH (EC 2.7.7.56) [Burkholderia rhizoxinica HKI 454]
Length = 243
Score = 178 bits (452), Expect = 4e-43, Method: Composition-based stats.
Identities = 122/237 (51%), Positives = 164/237 (69%), Gaps = 2/237 (0%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R SGR + +R++ +TR +K+AEGS L++ GDT ++ TA++ EKVP ++R+ GW+TA
Sbjct: 7 RPSGRAADALRDVCITRHYTKHAEGSVLIECGDTKVICTASVLEKVPEFLRDRGRGWLTA 66
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
EYGMLPR+T R REA G+Q GR+QEIQR+IGRALR+V DL LG R + IDCDVIQA
Sbjct: 67 EYGMLPRATHTRSDREAARGKQSGRTQEIQRLIGRALRAVFDLEKLGPRTLHIDCDVIQA 126
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
DGGTR A+ITGA++A HD + + + + + HVAA+S G+ P++DLDY E
Sbjct: 127 DGGTRCASITGAFIAAHDAVDTLLA--HGKLTATPILDHVAAVSVGIHGATPVLDLDYAE 184
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
DS D D N VMT +G VEVQG+AE FS+D A+L LA+ I LI+LQK +
Sbjct: 185 DSHCDTDMNVVMTGAGRFVEVQGTAEGEPFSRDELNALLGLAESGITRLIELQKKAL 241
>gi|296331615|ref|ZP_06874084.1| ribonuclease PH [Bacillus subtilis subsp. spizizenii ATCC 6633]
gi|305675426|ref|YP_003867098.1| ribonuclease PH [Bacillus subtilis subsp. spizizenii str. W23]
gi|296151210|gb|EFG92090.1| ribonuclease PH [Bacillus subtilis subsp. spizizenii ATCC 6633]
gi|305413670|gb|ADM38789.1| ribonuclease PH [Bacillus subtilis subsp. spizizenii str. W23]
Length = 245
Score = 178 bits (452), Expect = 4e-43, Method: Composition-based stats.
Identities = 108/243 (44%), Positives = 157/243 (64%), Gaps = 3/243 (1%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR GRQ +++R I+ + EGS L+ G+T ++ A++E++VP ++R GWIT
Sbjct: 1 MRHDGRQHDELRPITFDLDFISHPEGSVLITAGNTKVICNASVEDRVPPFLRGGGKGWIT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEY MLPR+T R RE+ G+ GR+ EIQR+IGRALR+VVDL LG R I IDCDVIQ
Sbjct: 61 AEYSMLPRATNQRTIRESSKGKISGRTMEIQRLIGRALRAVVDLEKLGERTIWIDCDVIQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY-PIVDLDY 179
ADGGTRTA+ITGA++A+ + + + + +AAIS G+ ++DL+Y
Sbjct: 121 ADGGTRTASITGAFLAMAIAIGKLIKA--GTIKTNPITDFLAAISVGIDKEQGILLDLNY 178
Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
EDS+ +VD N +MT SG VE+QG+ E ATFS++ +L LA+ I +L+ QK+ +
Sbjct: 179 EEDSSAEVDMNVIMTGSGRFVELQGTGEEATFSREDLNGLLGLAEKGIQELVDKQKEELG 238
Query: 240 NEV 242
+ +
Sbjct: 239 DSL 241
>gi|299066246|emb|CBJ37430.1| RNase PH (tRNA nucleotidyltransferase) [Ralstonia solanacearum
CMR15]
Length = 238
Score = 178 bits (452), Expect = 4e-43, Method: Composition-based stats.
Identities = 129/239 (53%), Positives = 166/239 (69%), Gaps = 2/239 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR SGRQ +Q+R ++LTR +++AEGS LV FGDTH+L TA++ KVP + + GW+T
Sbjct: 1 MRPSGRQPDQLRPVTLTRHYTRHAEGSVLVCFGDTHVLCTASVLPKVPPHKKGSGEGWVT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPRST R REA G+Q GR+QEIQR+IGRA+RSV DLSALG I +DCDV+Q
Sbjct: 61 AEYGMLPRSTHTRSDREAARGKQSGRTQEIQRLIGRAMRSVFDLSALGEHTIHLDCDVLQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+ITGA+VA HD + M + ++ VAA+S G++ G P++DLDY
Sbjct: 121 ADGGTRTASITGAFVAAHDAISVMRKK--GQLAGEPIRDFVAAVSVGVVDGVPVLDLDYP 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
EDS+ D D N VMT +G VEVQG+AE F++ A+L LA I LI LQK +
Sbjct: 179 EDSSCDTDMNVVMTGAGGFVEVQGTAEGTPFTRTEMDALLGLADQGIRTLIGLQKQALG 237
>gi|260779667|ref|ZP_05888557.1| ribonuclease PH [Vibrio coralliilyticus ATCC BAA-450]
gi|260604476|gb|EEX30780.1| ribonuclease PH [Vibrio coralliilyticus ATCC BAA-450]
Length = 238
Score = 178 bits (452), Expect = 4e-43, Method: Composition-based stats.
Identities = 121/240 (50%), Positives = 164/240 (68%), Gaps = 2/240 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR + RQ +Q+R I +TR + YAEGS LV+FG+T +L AT+EE VP W++ GW+T
Sbjct: 1 MRPNDRQADQIRPIKITRNYTAYAEGSVLVEFGNTKVLCNATVEENVPRWLKGQGKGWVT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPRST +R++REA SG+QGGR+ EIQR+I R+LR+VVDL A+G + +DCDVIQ
Sbjct: 61 AEYGMLPRSTHSRMRREAASGKQGGRTMEIQRLIARSLRAVVDLEAMGEIMVTVDCDVIQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+I+GA VA+ D QH+ + +KGHVAA+S G+L + DL+Y
Sbjct: 121 ADGGTRTASISGASVAMADAFQHLIEN--GKLKKNPMKGHVAAVSVGILGEDVLCDLEYV 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
EDS D D N VMT+ G ++EVQG+AE F+ +L A I +++ QK + N
Sbjct: 179 EDSAADTDMNVVMTEDGRMIEVQGTAEGEPFTHAELMKLLESATKGITEIVAAQKAALEN 238
>gi|83950767|ref|ZP_00959500.1| ribonuclease PH [Roseovarius nubinhibens ISM]
gi|83838666|gb|EAP77962.1| ribonuclease PH [Roseovarius nubinhibens ISM]
Length = 238
Score = 178 bits (452), Expect = 4e-43, Method: Composition-based stats.
Identities = 123/239 (51%), Positives = 173/239 (72%), Gaps = 2/239 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR SGR ++MR +S+ V+K+AEGSC+++ GDTH+L TAT+E++VP +I+ + GW+T
Sbjct: 1 MRPSGRALDEMRPVSIETGVTKHAEGSCMIRVGDTHVLCTATIEDRVPPFIKGSGLGWVT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPRST +R++REA +G+QGGR+ EIQR+IGR+LR+ VD ALG RQI +DCDVIQ
Sbjct: 61 AEYGMLPRSTTSRMRREASAGKQGGRTVEIQRLIGRSLRAGVDRVALGERQITVDCDVIQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTR A+ITG WVAL +Q + + V V A+SCG+ G ++DLDY
Sbjct: 121 ADGGTRCASITGGWVALKLAVQKLMKAGDVTSDPLV--DPVGAVSCGIYAGQLVLDLDYP 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
EDS VD NF+MT SG ++E Q SAE +TF++D +L+LA+ + +L +LQ+ ++
Sbjct: 179 EDSEAGVDGNFIMTASGRMIEAQMSAEGSTFTRDQMTGLLDLAEKGVQELAELQRAAMN 237
>gi|260463468|ref|ZP_05811668.1| ribonuclease PH [Mesorhizobium opportunistum WSM2075]
gi|259030793|gb|EEW32069.1| ribonuclease PH [Mesorhizobium opportunistum WSM2075]
Length = 238
Score = 178 bits (452), Expect = 4e-43, Method: Composition-based stats.
Identities = 150/239 (62%), Positives = 184/239 (76%), Gaps = 1/239 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR S RQ ++MR IS R VSK+AEGSCLVKFGDTH+L TA+LEEKVP W+RN+ GW+T
Sbjct: 1 MRPSKRQFDEMRAISFERGVSKHAEGSCLVKFGDTHVLCTASLEEKVPGWMRNSGKGWVT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPRSTG R++REA +G+QGGR+ EIQR+IGR+LR+VVDL ALG +QI +DCDVIQ
Sbjct: 61 AEYGMLPRSTGERMRREASAGKQGGRTLEIQRLIGRSLRAVVDLQALGEQQITVDCDVIQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+ITG WVAL+DCL+ ME VLK HVAAISCG+ G P++DLDY
Sbjct: 121 ADGGTRTASITGGWVALYDCLRWMEARQMTSVSK-VLKDHVAAISCGIHDGQPVIDLDYI 179
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
EDS+ DANFVMT G IVE+QG+AE FS+ F ++ LAK I L+ LQ+ ++
Sbjct: 180 EDSSAGTDANFVMTGKGGIVEIQGTAEGEPFSEGQFADLMGLAKKGIQRLVSLQQMAVA 238
>gi|91974875|ref|YP_567534.1| ribonuclease PH [Rhodopseudomonas palustris BisB5]
gi|123735818|sp|Q13E56|RNPH_RHOPS RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|91681331|gb|ABE37633.1| RNAse PH [Rhodopseudomonas palustris BisB5]
Length = 237
Score = 178 bits (452), Expect = 4e-43, Method: Composition-based stats.
Identities = 141/239 (58%), Positives = 181/239 (75%), Gaps = 2/239 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR S R +++R +SL R V KYAEGSCLVKFGDTH+L TATLEE++P W++ GW+T
Sbjct: 1 MRPSRRAPDELRAVSLERGVVKYAEGSCLVKFGDTHVLVTATLEERLPPWLKGQGRGWVT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPR+T R +REA +G+Q GR+ EIQR+IGR+LR++VDL ALG RQI +DCDV+Q
Sbjct: 61 AEYGMLPRATLERTRREAAAGKQNGRTVEIQRLIGRSLRAIVDLQALGERQITVDCDVLQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+ITGAWVAL DCL M+ + VL+ +VAAISCG+ G P++DLDY
Sbjct: 121 ADGGTRTASITGAWVALADCLGWMKTRNM--IKGTVLRDNVAAISCGIYNGTPVLDLDYA 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
EDS + DANFVMT G I+EVQG+AE+ FSQD F A++ LA+ + L+ LQK ++
Sbjct: 179 EDSEAETDANFVMTGDGRIIEVQGTAEKTPFSQDEFLALMALAQKGVTRLVDLQKMAVA 237
>gi|219871463|ref|YP_002475838.1| ribonuclease PH [Haemophilus parasuis SH0165]
gi|254808589|sp|B8F6D8|RNPH_HAEPS RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|219691667|gb|ACL32890.1| ribonuclease PH [Haemophilus parasuis SH0165]
Length = 244
Score = 178 bits (452), Expect = 5e-43, Method: Composition-based stats.
Identities = 120/239 (50%), Positives = 163/239 (68%), Gaps = 2/239 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR + R +Q R + +TR ++YAEGS LV+FG+T +L AT+EE VP +++ + GW+T
Sbjct: 1 MRPNNRPVDQTRPVKITRNYTRYAEGSVLVEFGETKVLCNATVEETVPRFLKGQQQGWVT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPR+T +R +REA G+QGGR+ EIQR+I R+LR+VVDL ALG R I +DCDVIQ
Sbjct: 61 AEYGMLPRATHSRTQREAAKGKQGGRTMEIQRLIARSLRAVVDLKALGERTITVDCDVIQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+ITGA VALHD + + +KG VAAIS G++ G + DL+Y
Sbjct: 121 ADGGTRTASITGACVALHDAINKLIAD--GLLKENPMKGLVAAISVGIVDGQAVCDLEYV 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
EDS + D N VM + G +VEVQG+AE FS +L+LA+ I L + Q+ ++
Sbjct: 179 EDSNAETDMNVVMVEDGRLVEVQGTAEGEPFSHMELLQLLDLAQKGIEQLFEAQRQALN 237
>gi|288817498|ref|YP_003431845.1| ribonuclease PH [Hydrogenobacter thermophilus TK-6]
gi|288786897|dbj|BAI68644.1| ribonuclease PH [Hydrogenobacter thermophilus TK-6]
gi|308751105|gb|ADO44588.1| ribonuclease PH [Hydrogenobacter thermophilus TK-6]
Length = 253
Score = 178 bits (452), Expect = 5e-43, Method: Composition-based stats.
Identities = 113/236 (47%), Positives = 159/236 (67%), Gaps = 2/236 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR GR+ N++R I + R ++ EGSCL++FG+T ++ T ++++ VP +++ GWIT
Sbjct: 1 MRKDGRKPNELRPIRIVRDYLQHPEGSCLIEFGNTKVICTVSVQDGVPPFLKGKGQGWIT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEY MLPR+T R RE+V GR GR+ EIQRMIGRA+R+ +DL+ +G R IDCDVIQ
Sbjct: 61 AEYSMLPRATITRNVRESVQGRISGRTHEIQRMIGRAMRTALDLTKIGERTFWIDCDVIQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+ITGA+VA+ D + + + S +K VA++S G + G ++DL+Y
Sbjct: 121 ADGGTRTASITGAFVAIADAVIKL--YNEGILSSTPIKDFVASVSVGTVNGQILLDLNYE 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
EDST VD N V T SG I E+Q E TFS++ F ML+LA I+ LI+LQ+
Sbjct: 179 EDSTASVDMNVVATGSGRISEIQALGEENTFSREEFDRMLSLALAGISQLIELQRA 234
>gi|239831019|ref|ZP_04679348.1| ribonuclease PH [Ochrobactrum intermedium LMG 3301]
gi|239823286|gb|EEQ94854.1| ribonuclease PH [Ochrobactrum intermedium LMG 3301]
Length = 238
Score = 178 bits (452), Expect = 5e-43, Method: Composition-based stats.
Identities = 148/239 (61%), Positives = 190/239 (79%), Gaps = 1/239 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR S R ++MR +S R +SK+AEGSCLVKFGDTH+L TA+LEEKVP W+RNT GW+T
Sbjct: 1 MRPSKRAADEMRAVSFERGISKHAEGSCLVKFGDTHVLCTASLEEKVPGWMRNTGKGWVT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPRSTG+R++REA +G+QGGR+QEIQR+IGR+LR+VVD+ ALG QI +DCDVIQ
Sbjct: 61 AEYGMLPRSTGDRMRREAAAGKQGGRTQEIQRLIGRSLRAVVDMQALGEVQITVDCDVIQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTAAITG WVALH+CL+ ME ++ +VLK H+AAISCG+ G P++DLDY
Sbjct: 121 ADGGTRTAAITGGWVALHECLRWMEARQM-VRVEKVLKDHIAAISCGIYEGEPVLDLDYA 179
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
EDS + D+NFVMT G IVE+QG+AE A FS++ F +++ LA+ I L+ LQK ++
Sbjct: 180 EDSVAETDSNFVMTGKGGIVEIQGTAEGAPFSEEEFASLMKLARGGIDRLVSLQKMAVA 238
>gi|254780630|ref|YP_003065043.1| ribonuclease PH [Candidatus Liberibacter asiaticus str. psy62]
gi|254040307|gb|ACT57103.1| ribonuclease PH [Candidatus Liberibacter asiaticus str. psy62]
Length = 242
Score = 178 bits (452), Expect = 5e-43, Method: Composition-based stats.
Identities = 242/242 (100%), Positives = 242/242 (100%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT
Sbjct: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ
Sbjct: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG
Sbjct: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN
Sbjct: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
Query: 241 EV 242
EV
Sbjct: 241 EV 242
>gi|87121112|ref|ZP_01077003.1| ribonuclease PH [Marinomonas sp. MED121]
gi|86163604|gb|EAQ64878.1| ribonuclease PH [Marinomonas sp. MED121]
Length = 239
Score = 178 bits (452), Expect = 5e-43, Method: Composition-based stats.
Identities = 118/238 (49%), Positives = 163/238 (68%), Gaps = 2/238 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR SGR +Q+R++ +TR +K+AEGS L++ GDT ++ TATL VP +++ GWIT
Sbjct: 1 MRPSGRAVDQLRDLKITRNFTKHAEGSVLIECGDTKVICTATLVPGVPRFLKGKGQGWIT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPRST +RV REA G+Q GR+ EIQR+IGR+LR+ VDL LG I IDCDVIQ
Sbjct: 61 AEYGMLPRSTHSRVDREAARGKQTGRTVEIQRLIGRSLRAAVDLKKLGEHTITIDCDVIQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+ITG +VAL D ++ + + K + +AAIS G+ G P++DLDY
Sbjct: 121 ADGGTRTASITGGFVALADAVKKLVER--KKIKENPIVSQIAAISVGVYKGEPVLDLDYP 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
EDS + D N +M D G +E+QG+AE FS +H ML +A+ I ++++ Q+D +
Sbjct: 179 EDSNAETDMNVIMNDKGGFIEIQGTAEGEAFSDEHMMGMLKVARKGINEILQAQRDAL 236
>gi|323527036|ref|YP_004229189.1| ribonuclease PH [Burkholderia sp. CCGE1001]
gi|323384038|gb|ADX56129.1| ribonuclease PH [Burkholderia sp. CCGE1001]
Length = 246
Score = 178 bits (452), Expect = 5e-43, Method: Composition-based stats.
Identities = 126/238 (52%), Positives = 163/238 (68%), Gaps = 2/238 (0%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R SGR +Q+R++ +TR +K+AEGS LV+FGDT ++ TA++ E VP ++R+ GW+TA
Sbjct: 7 RPSGRLADQLRDVRITRHYTKHAEGSVLVEFGDTKVICTASIAETVPSFLRDRGQGWLTA 66
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
EYGMLPR+T R REA G+Q GR+QEIQR+IGRALRSV DL LG+R + IDCDVIQA
Sbjct: 67 EYGMLPRATHTRSDREAARGKQTGRTQEIQRLIGRALRSVFDLEKLGARTLHIDCDVIQA 126
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
DGGTRTA+ITGA+VA HD + + + VAAIS G+ G P++DLDY E
Sbjct: 127 DGGTRTASITGAFVAAHDAVSKLLAAGRIESS--PISDFVAAISVGVYDGVPVLDLDYDE 184
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
DS D D N VMT +G VE+QG+AE FS+D A+L+LA IA L QK +
Sbjct: 185 DSQCDTDMNVVMTGAGGFVEIQGTAEGVPFSRDEMNALLDLASSGIATLTAKQKAALE 242
>gi|17988058|ref|NP_540692.1| ribonuclease PH [Brucella melitensis bv. 1 str. 16M]
gi|225851706|ref|YP_002731939.1| ribonuclease PH [Brucella melitensis ATCC 23457]
gi|256045962|ref|ZP_05448834.1| ribonuclease PH [Brucella melitensis bv. 1 str. Rev.1]
gi|256112675|ref|ZP_05453596.1| ribonuclease PH [Brucella melitensis bv. 3 str. Ether]
gi|256264784|ref|ZP_05467316.1| tRNA nucleotidyltransferase [Brucella melitensis bv. 2 str. 63/9]
gi|260563245|ref|ZP_05833731.1| tRNA nucleotidyltransferase [Brucella melitensis bv. 1 str. 16M]
gi|265992375|ref|ZP_06104932.1| tRNA nucleotidyltransferase [Brucella melitensis bv. 1 str. Rev.1]
gi|265994118|ref|ZP_06106675.1| tRNA nucleotidyltransferase [Brucella melitensis bv. 3 str. Ether]
gi|21759402|sp|Q8YEV2|RNPH_BRUME RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|254808582|sp|C0RGM7|RNPH_BRUMB RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|17983807|gb|AAL52956.1| ribonuclease ph [Brucella melitensis bv. 1 str. 16M]
gi|225640071|gb|ACN99984.1| ribonuclease PH [Brucella melitensis ATCC 23457]
gi|260153261|gb|EEW88353.1| tRNA nucleotidyltransferase [Brucella melitensis bv. 1 str. 16M]
gi|262765099|gb|EEZ11020.1| tRNA nucleotidyltransferase [Brucella melitensis bv. 3 str. Ether]
gi|263003441|gb|EEZ15734.1| tRNA nucleotidyltransferase [Brucella melitensis bv. 1 str. Rev.1]
gi|263095193|gb|EEZ18862.1| tRNA nucleotidyltransferase [Brucella melitensis bv. 2 str. 63/9]
gi|326408195|gb|ADZ65260.1| ribonuclease PH [Brucella melitensis M28]
gi|326537910|gb|ADZ86125.1| ribonuclease PH [Brucella melitensis M5-90]
Length = 238
Score = 178 bits (452), Expect = 5e-43, Method: Composition-based stats.
Identities = 151/239 (63%), Positives = 188/239 (78%), Gaps = 1/239 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR S R ++MR IS R VSK+AEGSCLVKFGDTH+L TA+LEEKVP W+RNT GW+T
Sbjct: 1 MRPSKRAADEMRTISFERGVSKHAEGSCLVKFGDTHVLCTASLEEKVPGWMRNTGKGWVT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPRSTG R++REA +G+QGGR+QEIQR+IGR+LR+VVD+ ALG QI +DCDVIQ
Sbjct: 61 AEYGMLPRSTGERMRREAAAGKQGGRTQEIQRLIGRSLRAVVDMQALGEMQITVDCDVIQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTAAITG WVALH+CL+ ME ++ +VLK HVAAISCG+ G P++DLDY
Sbjct: 121 ADGGTRTAAITGGWVALHECLRWMEARQM-VRVEKVLKDHVAAISCGIYEGVPVLDLDYA 179
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
EDS + D+NFVMT G IVE+QG+AE FS++ F A++ LA+ I L+ LQK ++
Sbjct: 180 EDSVAETDSNFVMTGKGGIVEIQGTAEGVPFSEEEFGALMKLARSGIDRLVSLQKMAVA 238
>gi|251793341|ref|YP_003008069.1| ribonuclease PH [Aggregatibacter aphrophilus NJ8700]
gi|247534736|gb|ACS97982.1| ribonuclease PH [Aggregatibacter aphrophilus NJ8700]
Length = 238
Score = 178 bits (451), Expect = 5e-43, Method: Composition-based stats.
Identities = 123/240 (51%), Positives = 164/240 (68%), Gaps = 2/240 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR + R NQ R I +TR +K+AEGS LV+FGDT +L TAT+EE VP +++ GW+T
Sbjct: 1 MRPNQRANNQTRPIKITRHYTKHAEGSVLVEFGDTKVLCTATVEEGVPRFLKGLGQGWVT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPRST +R++REA G+QGGR+ EIQR+I R+LR++VDL ALG R I +DCDVIQ
Sbjct: 61 AEYGMLPRSTHSRMQREAAKGKQGGRTLEIQRLIARSLRAMVDLEALGERCITLDCDVIQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+ITGA VAL D L + LKG VAAIS G++ G + DL+Y
Sbjct: 121 ADGGTRTASITGACVALCDALNGLVAN--GTLSKNPLKGLVAAISVGIVDGEAVCDLEYV 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
EDS + D N VM + G ++EVQG+AE FS + +L+LAK + + Q+ +++
Sbjct: 179 EDSAAETDMNVVMMEDGRMIEVQGTAEGEPFSHEELLTLLDLAKQGCDIIFQTQRAALAD 238
>gi|167854865|ref|ZP_02477642.1| ribonuclease PH [Haemophilus parasuis 29755]
gi|167854044|gb|EDS25281.1| ribonuclease PH [Haemophilus parasuis 29755]
Length = 244
Score = 178 bits (451), Expect = 5e-43, Method: Composition-based stats.
Identities = 120/239 (50%), Positives = 163/239 (68%), Gaps = 2/239 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR + R +Q R + +TR ++YAEGS LV+FG+T +L AT+EE VP +++ + GW+T
Sbjct: 1 MRPNNRPVDQTRPVKITRNYTRYAEGSVLVEFGETKVLCNATVEETVPRFLKGQQQGWVT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPR+T +R +REA G+QGGR+ EIQR+I R+LR+VVDL ALG R I +DCDVIQ
Sbjct: 61 AEYGMLPRATHSRTQREAAKGKQGGRTMEIQRLIARSLRAVVDLKALGERTITVDCDVIQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+ITGA VALHD + + +KG VAAIS G++ G + DL+Y
Sbjct: 121 ADGGTRTASITGACVALHDAINKLIAD--GLLKENPMKGLVAAISVGIVDGQAVCDLEYV 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
EDS + D N VM + G +VEVQG+AE FS +L+LA+ I L + Q+ ++
Sbjct: 179 EDSNAETDMNVVMVEDGRLVEVQGTAEGEPFSHMELLQLLDLAQKGIEQLFEAQRQALN 237
>gi|197106932|ref|YP_002132309.1| ribonuclease PH [Phenylobacterium zucineum HLK1]
gi|226736923|sp|B4RC87|RNPH_PHEZH RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|196480352|gb|ACG79880.1| ribonuclease PH [Phenylobacterium zucineum HLK1]
Length = 238
Score = 178 bits (451), Expect = 5e-43, Method: Composition-based stats.
Identities = 126/237 (53%), Positives = 168/237 (70%), Gaps = 2/237 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR S R+ + +R ++L V++YAEGSCL FG T +L TA+LEE VP ++R GW+T
Sbjct: 1 MRPSDRRPDLLRPVTLETGVNRYAEGSCLASFGHTKVLVTASLEEGVPPFLRGKGQGWVT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPR+T R +REA G+Q GR+QEIQR+IGR+LR+VVDL ALG RQI +DCDV+Q
Sbjct: 61 AEYGMLPRATHTRGRREAAQGKQSGRTQEIQRLIGRSLRAVVDLKALGERQITVDCDVVQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTAAITGAWVAL +++ + + + VAAISCG+ G P++DLDY
Sbjct: 121 ADGGTRTAAITGAWVALRLATRYLLEE--GVIATDPILDQVAAISCGVFSGTPVLDLDYE 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
EDS + DANFV+T +G IVE+Q + E+ FS+ F A+ LA+ I +L +LQ+
Sbjct: 179 EDSNAEADANFVLTGAGDIVEIQATGEKRGFSEAEFEALFALARKGIGELCELQRAA 235
>gi|23501084|ref|NP_697211.1| ribonuclease PH [Brucella suis 1330]
gi|38258602|sp|Q8G2Y5|RNPH_BRUSU RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|23346953|gb|AAN29126.1| ribonuclease PH [Brucella suis 1330]
Length = 238
Score = 178 bits (451), Expect = 5e-43, Method: Composition-based stats.
Identities = 151/239 (63%), Positives = 187/239 (78%), Gaps = 1/239 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR S R ++MR IS R VSK+AEGSCLVKFGDTH+L TA+LEEKVP W+RNT GW+T
Sbjct: 1 MRPSKRAADEMRAISFERGVSKHAEGSCLVKFGDTHVLCTASLEEKVPGWMRNTGKGWVT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPRSTG R++REA +G+QGGR+QEIQR IGR+LR+VVD+ ALG QI +DCDVIQ
Sbjct: 61 AEYGMLPRSTGERMRREAAAGKQGGRTQEIQRFIGRSLRAVVDMQALGEMQITVDCDVIQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTAAITG WVALH+CL+ ME ++ +VLK HVAAISCG+ G P++DLDY
Sbjct: 121 ADGGTRTAAITGGWVALHECLRWMEARQM-VRVEKVLKDHVAAISCGIYEGVPVLDLDYA 179
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
EDS + D+NFVMT G IVE+QG+AE FS++ F A++ LA+ I L+ LQK ++
Sbjct: 180 EDSVAETDSNFVMTGKGGIVEIQGTAEGVPFSEEEFGALMKLARSGIDRLVSLQKMAVA 238
>gi|153007527|ref|YP_001368742.1| ribonuclease PH [Ochrobactrum anthropi ATCC 49188]
gi|166228300|sp|A6WVA9|RNPH_OCHA4 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|151559415|gb|ABS12913.1| ribonuclease PH [Ochrobactrum anthropi ATCC 49188]
Length = 238
Score = 178 bits (451), Expect = 5e-43, Method: Composition-based stats.
Identities = 148/239 (61%), Positives = 189/239 (79%), Gaps = 1/239 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR S R ++MR +S R +SK+AEGSCLVKFGDTH+L TA+LEEKVP W+RNT GW+T
Sbjct: 1 MRPSKRAADEMRAVSFERGISKHAEGSCLVKFGDTHVLCTASLEEKVPGWMRNTGKGWVT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPRSTG+R++REA +G+QGGR+QEIQR+IGR+LR+VVD+ ALG QI +DCDVIQ
Sbjct: 61 AEYGMLPRSTGDRMRREAAAGKQGGRTQEIQRLIGRSLRAVVDMQALGEVQITVDCDVIQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTAAITG WVALH+CL+ ME ++ +VLK H+AAISCG+ G P++DLDY
Sbjct: 121 ADGGTRTAAITGGWVALHECLRWMEARQM-VRVEKVLKDHIAAISCGIYEGEPVLDLDYA 179
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
EDS + D+NFVMT G IVE+QG+AE A FS++ F ++ LA+ I L+ LQK ++
Sbjct: 180 EDSVAETDSNFVMTGKGGIVEIQGTAEGAPFSEEEFANLMKLARGGIDRLVSLQKMAVA 238
>gi|149204370|ref|ZP_01881337.1| ribonuclease PH [Roseovarius sp. TM1035]
gi|149142255|gb|EDM30302.1| ribonuclease PH [Roseovarius sp. TM1035]
Length = 238
Score = 178 bits (451), Expect = 6e-43, Method: Composition-based stats.
Identities = 127/237 (53%), Positives = 173/237 (72%), Gaps = 2/237 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR SGR ++MR +S+ V K+AEGSCL+K GDTH+L TAT+EE+VP +++ + GW+T
Sbjct: 1 MRPSGRNLSEMRSVSIETGVLKHAEGSCLIKIGDTHVLCTATIEERVPPFVKGSGLGWVT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPRSTG+R++REA +G+QGGR+ EIQR+IGR+LR+ VD ALG RQI +DCDVIQ
Sbjct: 61 AEYGMLPRSTGSRMRREATAGKQGGRTVEIQRLIGRSLRAGVDRVALGERQITVDCDVIQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTR A+ITG WVAL +Q + + + VAA+SCG+ G P++DLDY
Sbjct: 121 ADGGTRCASITGGWVALKLAVQKLMKAGDVLSDPLI--DPVAAVSCGIYAGQPVLDLDYP 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
EDS VD NF+MT + ++EVQ SAE AT+S+D A+L+LA+ + L+ Q++
Sbjct: 179 EDSEAGVDGNFIMTGTKRLIEVQMSAEGATYSRDQMNALLDLAELGVDQLVAKQREA 235
>gi|220936120|ref|YP_002515019.1| ribonuclease PH [Thioalkalivibrio sp. HL-EbGR7]
gi|254808601|sp|B8GPB2|RNPH_THISH RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|219997430|gb|ACL74032.1| ribonuclease PH [Thioalkalivibrio sp. HL-EbGR7]
Length = 239
Score = 178 bits (451), Expect = 6e-43, Method: Composition-based stats.
Identities = 127/240 (52%), Positives = 166/240 (69%), Gaps = 2/240 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR SGRQ +Q+REI TRR +K+AEGS LV+FGDT +L TA+++++ P W+RN GW+T
Sbjct: 1 MRPSGRQPDQLREIRFTRRFTKHAEGSVLVEFGDTRVLCTASVDDRTPPWLRNKGSGWVT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPRST R+ REA G+QGGR+QEIQR+IGR+LR+ VDL LG RQI +DCDV+Q
Sbjct: 61 AEYGMLPRSTHERMAREAARGKQGGRTQEIQRLIGRSLRAAVDLEGLGERQITVDCDVLQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+I+G +VALHD + L G VA++S G+ G P++DLDY
Sbjct: 121 ADGGTRTASISGGYVALHDAI--THLMKQGKLKRNPLFGAVASVSVGIYQGVPVLDLDYA 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
EDS + D N VM D+ +EVQG+AE F D +ML LA+ I D+I Q+ +
Sbjct: 179 EDSNAETDMNVVMNDANAFIEVQGTAEGHAFRMDELNSMLALAQSGIQDIIAAQRAALEQ 238
>gi|312110014|ref|YP_003988330.1| ribonuclease PH [Geobacillus sp. Y4.1MC1]
gi|311215115|gb|ADP73719.1| ribonuclease PH [Geobacillus sp. Y4.1MC1]
Length = 256
Score = 178 bits (451), Expect = 6e-43, Method: Composition-based stats.
Identities = 108/241 (44%), Positives = 156/241 (64%), Gaps = 3/241 (1%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR+ GR+ Q+R + + + K+AEGS + GDT ++ TA++++KVP ++R GWIT
Sbjct: 1 MRVDGRENKQLRPVHMEKHFIKHAEGSVFITVGDTKVICTASIDDKVPPFMRGGGKGWIT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEY MLPR+T R RE+ G+ GR+ EIQR+IGRALRSVV+L LG + + IDCDVIQ
Sbjct: 61 AEYAMLPRATEQRNVRESSKGKVSGRTMEIQRLIGRALRSVVNLDKLGEKTVWIDCDVIQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY-PIVDLDY 179
ADGGTRTA+ITGA+VA+ + + K + +AA S G+ + I+DL+Y
Sbjct: 121 ADGGTRTASITGAYVAMVLAFAKLVEE--KKLDELPVNDFLAATSVGIDPEHGIILDLNY 178
Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
ED+ +VD N VMT +G VE+QG+ E ATFS++ +L+ A+ I LI +Q+ +
Sbjct: 179 TEDARAEVDMNVVMTGAGRFVEIQGTGEEATFSREQLNELLDTAEVGIRQLIDIQRKTLG 238
Query: 240 N 240
Sbjct: 239 E 239
>gi|89098915|ref|ZP_01171795.1| ribonuclease PH [Bacillus sp. NRRL B-14911]
gi|89086319|gb|EAR65440.1| ribonuclease PH [Bacillus sp. NRRL B-14911]
Length = 277
Score = 178 bits (451), Expect = 6e-43, Method: Composition-based stats.
Identities = 107/242 (44%), Positives = 152/242 (62%), Gaps = 1/242 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR GR++ Q+R I + + EGS L+ G+T ++ TA+++E+VP ++R GWIT
Sbjct: 31 MRKDGREQLQLRPIHIETNYLMHPEGSVLISVGNTKVICTASIDERVPPFMRGEGKGWIT 90
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEY MLPR+T R REA G+ GR+ EIQR+IGRALR+VVDL ALG R I +DCDVIQ
Sbjct: 91 AEYSMLPRATEQRNIREAAKGKITGRTMEIQRLIGRALRAVVDLEALGERTIWLDCDVIQ 150
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+ITGA+VA+ ++ + K + + A + ++DL+Y
Sbjct: 151 ADGGTRTASITGAFVAMAIAVEKLYSNK-KLSKFPITQFLAATSVGILENKQVVLDLNYA 209
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
EDS +VD N VMT +G VE+QG+ E ATFS +L A++ + L +QK V+
Sbjct: 210 EDSKAEVDMNVVMTGNGEFVELQGTGEEATFSASQLTELLKAAEEGVGRLFDIQKQVLGE 269
Query: 241 EV 242
++
Sbjct: 270 KI 271
>gi|85711491|ref|ZP_01042549.1| RNase PH [Idiomarina baltica OS145]
gi|85694643|gb|EAQ32583.1| RNase PH [Idiomarina baltica OS145]
Length = 237
Score = 178 bits (451), Expect = 6e-43, Method: Composition-based stats.
Identities = 119/239 (49%), Positives = 164/239 (68%), Gaps = 2/239 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR SGR Q+R +++TR +K+AEGS L++FGDT +L AT+E VP +++ GW+T
Sbjct: 1 MRPSGRTAQQIRPVTITRNFTKHAEGSVLIEFGDTKVLCNATVEAGVPRFLKGQGQGWVT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEY MLPRST R +REA G+QGGR+ EIQR+I R+LR+ +DL ALG I +DCDV+Q
Sbjct: 61 AEYSMLPRSTHTRSQREAARGKQGGRTMEIQRLIARSLRACIDLKALGENTITLDCDVLQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+ITGA VAL D L +M K LK VAAIS G++ G + DL+Y
Sbjct: 121 ADGGTRTASITGACVALVDALNYMRAS--KMVKVNPLKEMVAAISVGIVDGDAVSDLEYI 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
EDS + D N VMT++G +E+QG+AE FS D +++++A+ I +LI +QK ++
Sbjct: 179 EDSQAETDMNVVMTEAGKFIEIQGTAEGEAFSYDEMQSLVDIARVSIKELIDIQKAALA 237
>gi|134095311|ref|YP_001100386.1| RNase PH [Herminiimonas arsenicoxydans]
gi|133739214|emb|CAL62263.1| Ribonuclease PH (RNase PH) (tRNA nucleotidyltransferase)
[Herminiimonas arsenicoxydans]
Length = 244
Score = 178 bits (451), Expect = 6e-43, Method: Composition-based stats.
Identities = 122/238 (51%), Positives = 163/238 (68%), Gaps = 2/238 (0%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R SGR + +R I R +K+AEGS L++ GDT ++ TA++E++VP +++ GW+TA
Sbjct: 6 RPSGRAADALRAIKFIRNYTKHAEGSVLIECGDTKVICTASIEDRVPGFLKGKGQGWLTA 65
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
EYGMLPRST R+ REA G+Q GR+QEIQR+IGR+LR+ DL A G R + +DCDVIQA
Sbjct: 66 EYGMLPRSTHTRMDREAARGKQSGRTQEIQRLIGRSLRAAFDLQAFGERTLHLDCDVIQA 125
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
DGGTRTAAITG VA +D + + + LK VAAIS G+ G P++DLDY E
Sbjct: 126 DGGTRTAAITGTMVAAYDAFSKLVAQN--VIPAIPLKHFVAAISVGVYKGQPVLDLDYDE 183
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
DS D D N VMTD+GH +EVQG+AE A F + +L+LA+D I DLI +QK ++
Sbjct: 184 DSDCDTDMNIVMTDAGHFIEVQGTAEGAAFDRATMDRLLDLAQDGIRDLIVMQKQALA 241
>gi|114769782|ref|ZP_01447392.1| ribonuclease PH [alpha proteobacterium HTCC2255]
gi|114549487|gb|EAU52369.1| ribonuclease PH [alpha proteobacterium HTCC2255]
Length = 237
Score = 178 bits (451), Expect = 6e-43, Method: Composition-based stats.
Identities = 133/239 (55%), Positives = 171/239 (71%), Gaps = 2/239 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR SGR + MR I + +K+AEGSCL+K GDTH+L TA++E++ P W+RNT GW+T
Sbjct: 1 MRPSGRAIDIMRPIEVEVGFTKHAEGSCLIKCGDTHVLCTASVEDRTPPWLRNTGMGWVT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPRSTG+R +REA SG+Q GR+QEIQR+IGR+LR+ +D LG RQI +DCDV+Q
Sbjct: 61 AEYGMLPRSTGSRNRREAASGKQSGRTQEIQRLIGRSLRAGIDRLTLGERQITVDCDVLQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTR A+ITG W+AL + M L HVAA+SCG+ G PI+DLDY
Sbjct: 121 ADGGTRCASITGGWIALRLAINAMIKA--GDLKEDPLTEHVAAVSCGIYGGQPILDLDYA 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
EDS DANFVMT S +VE+QGSAE ATF + F ++++LA+ I++LI QK IS
Sbjct: 179 EDSEAGTDANFVMTGSNGLVEIQGSAEGATFDRTEFNSLMDLAEKGISELIIAQKAAIS 237
>gi|121593343|ref|YP_985239.1| ribonuclease PH [Acidovorax sp. JS42]
gi|120605423|gb|ABM41163.1| RNAse PH [Acidovorax sp. JS42]
Length = 244
Score = 178 bits (451), Expect = 6e-43, Method: Composition-based stats.
Identities = 129/239 (53%), Positives = 166/239 (69%), Gaps = 2/239 (0%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R GR +Q+R I +TR + +AEG+ L++FG+T +L TA++EEKVP R + GW+TA
Sbjct: 8 RSGGRALDQLRPIRITRHYTMHAEGAVLIEFGNTRVLCTASVEEKVPPHKRGSGEGWVTA 67
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
EYGMLPRST R REA G+Q GR+QEIQR+IGR+LR+V DL ALG R I IDCDVIQA
Sbjct: 68 EYGMLPRSTHTRSDREAARGKQSGRTQEIQRLIGRSLRAVFDLKALGERTIQIDCDVIQA 127
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
DGGTRTAAITGAWVA D + + + L G VAA+S G++ G P++DL+Y E
Sbjct: 128 DGGTRTAAITGAWVAAQDAVNTLLAA--GKISASPLTGAVAAVSVGIVQGQPLLDLEYVE 185
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
D D D N VMT +GH VEVQG+AE ATFS+ +L LA+ IA+L+ LQ+ + N
Sbjct: 186 DVACDTDMNVVMTGTGHYVEVQGTAEGATFSRQEMDQLLALAEKGIAELLALQRQSLRN 244
>gi|62289149|ref|YP_220942.1| ribonuclease PH [Brucella abortus bv. 1 str. 9-941]
gi|82699088|ref|YP_413662.1| ribonuclease PH [Brucella melitensis biovar Abortus 2308]
gi|148559274|ref|YP_001258205.1| ribonuclease PH [Brucella ovis ATCC 25840]
gi|161618161|ref|YP_001592048.1| ribonuclease PH [Brucella canis ATCC 23365]
gi|163842442|ref|YP_001626846.1| ribonuclease PH [Brucella suis ATCC 23445]
gi|189023423|ref|YP_001934191.1| ribonuclease PH [Brucella abortus S19]
gi|225626711|ref|ZP_03784750.1| ribonuclease PH [Brucella ceti str. Cudo]
gi|237814642|ref|ZP_04593640.1| ribonuclease PH [Brucella abortus str. 2308 A]
gi|254690474|ref|ZP_05153728.1| ribonuclease PH [Brucella abortus bv. 6 str. 870]
gi|254694963|ref|ZP_05156791.1| ribonuclease PH [Brucella abortus bv. 3 str. Tulya]
gi|254696594|ref|ZP_05158422.1| ribonuclease PH [Brucella abortus bv. 2 str. 86/8/59]
gi|254700978|ref|ZP_05162806.1| ribonuclease PH [Brucella suis bv. 5 str. 513]
gi|254705349|ref|ZP_05167177.1| ribonuclease PH [Brucella suis bv. 3 str. 686]
gi|254707138|ref|ZP_05168966.1| ribonuclease PH [Brucella pinnipedialis M163/99/10]
gi|254709319|ref|ZP_05171130.1| ribonuclease PH [Brucella pinnipedialis B2/94]
gi|254713260|ref|ZP_05175071.1| ribonuclease PH [Brucella ceti M644/93/1]
gi|254716387|ref|ZP_05178198.1| ribonuclease PH [Brucella ceti M13/05/1]
gi|254718387|ref|ZP_05180198.1| ribonuclease PH [Brucella sp. 83/13]
gi|254731507|ref|ZP_05190085.1| ribonuclease PH [Brucella abortus bv. 4 str. 292]
gi|256030842|ref|ZP_05444456.1| ribonuclease PH [Brucella pinnipedialis M292/94/1]
gi|256060312|ref|ZP_05450485.1| ribonuclease PH [Brucella neotomae 5K33]
gi|256158871|ref|ZP_05456725.1| ribonuclease PH [Brucella ceti M490/95/1]
gi|256254248|ref|ZP_05459784.1| ribonuclease PH [Brucella ceti B1/94]
gi|256258730|ref|ZP_05464266.1| ribonuclease PH [Brucella abortus bv. 9 str. C68]
gi|256368637|ref|YP_003106143.1| ribonuclease PH [Brucella microti CCM 4915]
gi|260169746|ref|ZP_05756557.1| ribonuclease PH [Brucella sp. F5/99]
gi|260546446|ref|ZP_05822186.1| ribonuclease PH [Brucella abortus NCTC 8038]
gi|260567190|ref|ZP_05837660.1| ribonuclease PH [Brucella suis bv. 4 str. 40]
gi|260756028|ref|ZP_05868376.1| tRNA nucleotidyltransferase [Brucella abortus bv. 6 str. 870]
gi|260759252|ref|ZP_05871600.1| tRNA nucleotidyltransferase [Brucella abortus bv. 4 str. 292]
gi|260760975|ref|ZP_05873318.1| tRNA nucleotidyltransferase [Brucella abortus bv. 2 str. 86/8/59]
gi|260885049|ref|ZP_05896663.1| tRNA nucleotidyltransferase [Brucella abortus bv. 9 str. C68]
gi|261215305|ref|ZP_05929586.1| tRNA nucleotidyltransferase [Brucella abortus bv. 3 str. Tulya]
gi|261218173|ref|ZP_05932454.1| tRNA nucleotidyltransferase [Brucella ceti M13/05/1]
gi|261221399|ref|ZP_05935680.1| tRNA nucleotidyltransferase [Brucella ceti B1/94]
gi|261314614|ref|ZP_05953811.1| tRNA nucleotidyltransferase [Brucella pinnipedialis M163/99/10]
gi|261316830|ref|ZP_05956027.1| tRNA nucleotidyltransferase [Brucella pinnipedialis B2/94]
gi|261320979|ref|ZP_05960176.1| tRNA nucleotidyltransferase [Brucella ceti M644/93/1]
gi|261324287|ref|ZP_05963484.1| tRNA nucleotidyltransferase [Brucella neotomae 5K33]
gi|261751499|ref|ZP_05995208.1| tRNA nucleotidyltransferase [Brucella suis bv. 5 str. 513]
gi|261756063|ref|ZP_05999772.1| tRNA nucleotidyltransferase [Brucella suis bv. 3 str. 686]
gi|261759287|ref|ZP_06002996.1| ribonuclease PH [Brucella sp. F5/99]
gi|265983351|ref|ZP_06096086.1| tRNA nucleotidyltransferase [Brucella sp. 83/13]
gi|265987900|ref|ZP_06100457.1| tRNA nucleotidyltransferase [Brucella pinnipedialis M292/94/1]
gi|265997361|ref|ZP_06109918.1| tRNA nucleotidyltransferase [Brucella ceti M490/95/1]
gi|294851571|ref|ZP_06792244.1| ribonuclease PH [Brucella sp. NVSL 07-0026]
gi|297247565|ref|ZP_06931283.1| ribonuclease PH [Brucella abortus bv. 5 str. B3196]
gi|306839620|ref|ZP_07472424.1| ribonuclease PH [Brucella sp. NF 2653]
gi|306842542|ref|ZP_07475193.1| ribonuclease PH [Brucella sp. BO2]
gi|306844440|ref|ZP_07477030.1| ribonuclease PH [Brucella sp. BO1]
gi|75497456|sp|Q57FK3|RNPH_BRUAB RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|123546812|sp|Q2YP33|RNPH_BRUA2 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|166228268|sp|A5VNA8|RNPH_BRUO2 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|189043754|sp|A9M7B8|RNPH_BRUC2 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|189043755|sp|B0CJ32|RNPH_BRUSI RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|226736890|sp|B2S8G4|RNPH_BRUA1 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|62195281|gb|AAX73581.1| Rph, ribonuclease PH [Brucella abortus bv. 1 str. 9-941]
gi|82615189|emb|CAJ10128.1| 3' exoribonuclease:Ribonuclease PH [Brucella melitensis biovar
Abortus 2308]
gi|148370531|gb|ABQ60510.1| ribonuclease PH [Brucella ovis ATCC 25840]
gi|161334972|gb|ABX61277.1| ribonuclease PH [Brucella canis ATCC 23365]
gi|163673165|gb|ABY37276.1| ribonuclease PH [Brucella suis ATCC 23445]
gi|189018995|gb|ACD71717.1| Ribonuclease PH [Brucella abortus S19]
gi|225618368|gb|EEH15411.1| ribonuclease PH [Brucella ceti str. Cudo]
gi|237789479|gb|EEP63689.1| ribonuclease PH [Brucella abortus str. 2308 A]
gi|255998795|gb|ACU47194.1| ribonuclease PH [Brucella microti CCM 4915]
gi|260096553|gb|EEW80429.1| ribonuclease PH [Brucella abortus NCTC 8038]
gi|260156708|gb|EEW91788.1| ribonuclease PH [Brucella suis bv. 4 str. 40]
gi|260669570|gb|EEX56510.1| tRNA nucleotidyltransferase [Brucella abortus bv. 4 str. 292]
gi|260671407|gb|EEX58228.1| tRNA nucleotidyltransferase [Brucella abortus bv. 2 str. 86/8/59]
gi|260676136|gb|EEX62957.1| tRNA nucleotidyltransferase [Brucella abortus bv. 6 str. 870]
gi|260874577|gb|EEX81646.1| tRNA nucleotidyltransferase [Brucella abortus bv. 9 str. C68]
gi|260916912|gb|EEX83773.1| tRNA nucleotidyltransferase [Brucella abortus bv. 3 str. Tulya]
gi|260919983|gb|EEX86636.1| tRNA nucleotidyltransferase [Brucella ceti B1/94]
gi|260923262|gb|EEX89830.1| tRNA nucleotidyltransferase [Brucella ceti M13/05/1]
gi|261293669|gb|EEX97165.1| tRNA nucleotidyltransferase [Brucella ceti M644/93/1]
gi|261296053|gb|EEX99549.1| tRNA nucleotidyltransferase [Brucella pinnipedialis B2/94]
gi|261300267|gb|EEY03764.1| tRNA nucleotidyltransferase [Brucella neotomae 5K33]
gi|261303640|gb|EEY07137.1| tRNA nucleotidyltransferase [Brucella pinnipedialis M163/99/10]
gi|261739271|gb|EEY27267.1| ribonuclease PH [Brucella sp. F5/99]
gi|261741252|gb|EEY29178.1| tRNA nucleotidyltransferase [Brucella suis bv. 5 str. 513]
gi|261745816|gb|EEY33742.1| tRNA nucleotidyltransferase [Brucella suis bv. 3 str. 686]
gi|262551829|gb|EEZ07819.1| tRNA nucleotidyltransferase [Brucella ceti M490/95/1]
gi|264660097|gb|EEZ30358.1| tRNA nucleotidyltransferase [Brucella pinnipedialis M292/94/1]
gi|264661943|gb|EEZ32204.1| tRNA nucleotidyltransferase [Brucella sp. 83/13]
gi|294820160|gb|EFG37159.1| ribonuclease PH [Brucella sp. NVSL 07-0026]
gi|297174734|gb|EFH34081.1| ribonuclease PH [Brucella abortus bv. 5 str. B3196]
gi|306275253|gb|EFM57003.1| ribonuclease PH [Brucella sp. BO1]
gi|306287398|gb|EFM58878.1| ribonuclease PH [Brucella sp. BO2]
gi|306405318|gb|EFM61593.1| ribonuclease PH [Brucella sp. NF 2653]
Length = 238
Score = 178 bits (451), Expect = 6e-43, Method: Composition-based stats.
Identities = 151/239 (63%), Positives = 188/239 (78%), Gaps = 1/239 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR S R ++MR IS R VSK+AEGSCLVKFGDTH+L TA+LEEKVP W+RNT GW+T
Sbjct: 1 MRPSKRAADEMRAISFERGVSKHAEGSCLVKFGDTHVLCTASLEEKVPGWMRNTGKGWVT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPRSTG R++REA +G+QGGR+QEIQR+IGR+LR+VVD+ ALG QI +DCDVIQ
Sbjct: 61 AEYGMLPRSTGERMRREAAAGKQGGRTQEIQRLIGRSLRAVVDMQALGEMQITVDCDVIQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTAAITG WVALH+CL+ ME ++ +VLK HVAAISCG+ G P++DLDY
Sbjct: 121 ADGGTRTAAITGGWVALHECLRWMEARQM-VRVEKVLKDHVAAISCGIYEGVPVLDLDYA 179
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
EDS + D+NFVMT G IVE+QG+AE FS++ F A++ LA+ I L+ LQK ++
Sbjct: 180 EDSVAETDSNFVMTGKGGIVEIQGTAEGVPFSEEEFGALMKLARSGIDRLVSLQKMAVA 238
>gi|295399427|ref|ZP_06809409.1| ribonuclease PH [Geobacillus thermoglucosidasius C56-YS93]
gi|294978893|gb|EFG54489.1| ribonuclease PH [Geobacillus thermoglucosidasius C56-YS93]
Length = 256
Score = 178 bits (451), Expect = 7e-43, Method: Composition-based stats.
Identities = 108/241 (44%), Positives = 156/241 (64%), Gaps = 3/241 (1%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR+ GR+ Q+R + + + K+AEGS + GDT ++ TA++++KVP ++R GWIT
Sbjct: 1 MRVDGRENKQLRPVHMEKHFIKHAEGSVFITVGDTKVICTASIDDKVPPFMRGGGKGWIT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEY MLPR+T R RE+ G+ GR+ EIQR+IGRALRSVV+L LG + + IDCDVIQ
Sbjct: 61 AEYAMLPRATEQRNVRESSKGKVSGRTMEIQRLIGRALRSVVNLDKLGEKTVWIDCDVIQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY-PIVDLDY 179
ADGGTRTA+ITGA+VA+ + + K + +AA S G+ + I+DL+Y
Sbjct: 121 ADGGTRTASITGAYVAMVLAFAKLVEE--KKLDELPVNDFLAATSVGIDPEHGIILDLNY 178
Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
ED+ +VD N VMT +G VE+QG+ E ATFS++ +L+ A+ I LI +Q+ +
Sbjct: 179 TEDARAEVDMNVVMTGAGRFVEIQGTGEEATFSREQLNELLDTAEVGIRQLIDIQRKTLG 238
Query: 240 N 240
Sbjct: 239 E 239
>gi|257468117|ref|ZP_05632213.1| ribonuclease PH [Fusobacterium ulcerans ATCC 49185]
gi|317062402|ref|ZP_07926887.1| ribonuclease PH [Fusobacterium ulcerans ATCC 49185]
gi|313688078|gb|EFS24913.1| ribonuclease PH [Fusobacterium ulcerans ATCC 49185]
Length = 254
Score = 178 bits (451), Expect = 7e-43, Method: Composition-based stats.
Identities = 112/240 (46%), Positives = 161/240 (67%), Gaps = 2/240 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+R GR+ + +REI +T+ + YAEGS L++FG+T ++ TA++ EKVP ++R GW+T
Sbjct: 17 LREDGRKVDSLREIKITKDFNLYAEGSVLIEFGNTKVICTASVSEKVPPFMRGQGKGWLT 76
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEY M+PR+TG R +RE+ G+ GR+ EIQR+IGRALR+ VDL LG R I IDCDVIQ
Sbjct: 77 AEYSMIPRATGERNQRESAKGKLSGRTMEIQRLIGRALRTAVDLEKLGERTITIDCDVIQ 136
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRT +I+G ++AL ++ + V VAAIS G++ G P++DL Y
Sbjct: 137 ADGGTRTTSISGGFIALALAVKKLMKDRVLNVNPIVSN--VAAISVGIVRGTPMLDLMYT 194
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
EDS +VD N VM G VEVQG+ E AT+++ +++LA+ I ++I+LQ +VI
Sbjct: 195 EDSAAEVDMNVVMNGKGEFVEVQGTGEEATYTRKELNELIDLAEVGIKEIIRLQNEVIGE 254
>gi|187933801|ref|YP_001884652.1| ribonuclease PH [Clostridium botulinum B str. Eklund 17B]
gi|226736899|sp|B2TJ05|RNPH_CLOBB RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|187721954|gb|ACD23175.1| tRNA nucleotidyltransferase [Clostridium botulinum B str. Eklund
17B]
Length = 249
Score = 178 bits (451), Expect = 7e-43, Method: Composition-based stats.
Identities = 110/239 (46%), Positives = 155/239 (64%), Gaps = 2/239 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR+ GR+ Q+R + +TR +KYAEGS ++ GDT +L ++E+KVP +++ T GWIT
Sbjct: 1 MRIDGRKNEQIRHVKVTRHYTKYAEGSVYIEVGDTKVLCNVSIEDKVPPFMKGTGSGWIT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEY MLPRST R R+ + GR+ EIQR+IGRALRSVVDL ALG + + IDCDVIQ
Sbjct: 61 AEYNMLPRSTETRKIRDIARLKIDGRTMEIQRLIGRALRSVVDLKALGEKTLWIDCDVIQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRT AI+GA++AL D + + ++ VAA+S G++ I+DL Y
Sbjct: 121 ADGGTRTTAISGAFIALVDAVNKLHKIKPFKI--YPIRSFVAAVSVGIVNEEKILDLCYQ 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
EDS VD N +MTD G VEVQG+ E + +++ +L+L + I +I +QK+ +
Sbjct: 179 EDSKAKVDMNIIMTDEGSFVEVQGTGEESPYTRAELNELLDLGEKGIKQMINVQKESLK 237
>gi|206603687|gb|EDZ40167.1| Ribonuclease PH [Leptospirillum sp. Group II '5-way CG']
Length = 245
Score = 178 bits (450), Expect = 7e-43, Method: Composition-based stats.
Identities = 115/237 (48%), Positives = 159/237 (67%), Gaps = 2/237 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR GR+ +R +S+ V+ YAEGS LV+ G+T +L TA++EEKVP ++++ GW+T
Sbjct: 2 MRSDGRKPENLRSLSIKTGVNLYAEGSVLVEMGNTKVLCTASVEEKVPPFLKDQGKGWVT 61
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPRST R REA G+Q GR+QEIQR+IGR+LRSVVD +G R I IDCDV+Q
Sbjct: 62 AEYGMLPRSTHERNSREAAKGKQSGRTQEIQRLIGRSLRSVVDTKKMGVRTITIDCDVLQ 121
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+I+G +VA+ + ++ ++AA+S G++ G P++DL Y
Sbjct: 122 ADGGTRTASISGGFVAMCLAFSELHKR--GLMPEWPVREYLAAVSVGVVEGLPVLDLCYT 179
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
EDS + D N VMT+SGH VE+QG+AE FS+ +L L + I ++I QK V
Sbjct: 180 EDSGAETDMNLVMTESGHFVEIQGTAEETPFSRQTLDTLLGLGEKGIREIIACQKSV 236
>gi|328675533|gb|AEB28208.1| Ribonuclease PH [Francisella cf. novicida 3523]
Length = 235
Score = 178 bits (450), Expect = 7e-43, Method: Composition-based stats.
Identities = 115/232 (49%), Positives = 162/232 (69%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR SGR +Q+R + +T +K+AEGS L++FGDT ++ TA++ VP + +++ GW+T
Sbjct: 1 MRPSGRNNDQLRNLKVTHNFTKHAEGSVLIEFGDTKVICTASVVAGVPKFKKDSGEGWLT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPRST R+ REA G+Q GR+QEIQR+IGRALR+ VDL+A+G I +DCDVIQ
Sbjct: 61 AEYGMLPRSTHTRMDREAARGKQSGRTQEIQRLIGRALRASVDLTAIGENTIKVDCDVIQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+ITGA +A+ D +++M+ + + L VAA+S G+ P++DLDY
Sbjct: 121 ADGGTRTASITGASLAIADAIKYMKQNGMLDEQANPLLSQVAAVSVGIYNNEPVLDLDYD 180
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
EDS + D N VM +G I+E+QG+AE FS++ F ML LAK I ++
Sbjct: 181 EDSNAETDMNVVMNSNGGIIEIQGTAEGKDFSEEEFAKMLGLAKKGIKEIFA 232
>gi|88705452|ref|ZP_01103163.1| ribonuclease PH (RNase PH) [Congregibacter litoralis KT71]
gi|88700542|gb|EAQ97650.1| ribonuclease PH (RNase PH) [Congregibacter litoralis KT71]
Length = 269
Score = 178 bits (450), Expect = 7e-43, Method: Composition-based stats.
Identities = 125/238 (52%), Positives = 168/238 (70%), Gaps = 2/238 (0%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R SGR +Q+R+IS+ R+ + +AEGS LV FG+T ++ TA++E+ VP ++R GWITA
Sbjct: 32 RPSGRAPDQLRDISIERQFTCHAEGSVLVSFGNTRVICTASVEDSVPRFLRGKNSGWITA 91
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
EYGMLPRSTG+R+ REA G+QGGR+QEIQR+IGR+LR+ VDLS LG I +DCDVIQA
Sbjct: 92 EYGMLPRSTGSRMGREAARGKQGGRTQEIQRLIGRSLRAAVDLSKLGEHTITLDCDVIQA 151
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
DGGTRTA+ITGA+VAL D + ++ K + L+ VA++S G+ G ++DLDY E
Sbjct: 152 DGGTRTASITGAFVALVDAINGLQRD--KKISTDPLRHFVASVSVGVYQGEAVLDLDYPE 209
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
DS D D N VM + G +EVQG+AE A FS+ ML+LA IA LI Q+ ++
Sbjct: 210 DSKADTDLNVVMAEGGEFIEVQGTAEAAPFSRTDLDKMLDLASGGIATLIDCQRAALA 267
>gi|325294219|ref|YP_004280733.1| ribonuclease PH [Desulfurobacterium thermolithotrophum DSM 11699]
gi|325064667|gb|ADY72674.1| Ribonuclease PH [Desulfurobacterium thermolithotrophum DSM 11699]
Length = 235
Score = 178 bits (450), Expect = 7e-43, Method: Composition-based stats.
Identities = 117/239 (48%), Positives = 164/239 (68%), Gaps = 7/239 (2%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+R GR+ +++R + +T K+AEGSCL++FGDT ++ TA++EEK+P +++ T GWIT
Sbjct: 2 IRNDGRKIDELRPVKITVDYIKHAEGSCLIEFGDTKVICTASVEEKIPPFLKGTGQGWIT 61
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEY MLPR+T R RE+ GR GR+QEIQR+IGR++RS VDL+ALG + IDCDVIQ
Sbjct: 62 AEYSMLPRATATRTIRESAKGRLTGRTQEIQRLIGRSVRSTVDLTALGEITVWIDCDVIQ 121
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+ITGA+VAL+ L+ K +K VAA+S G++ G ++DL+Y
Sbjct: 122 ADGGTRTASITGAFVALYRALE-------KIDKLDAVKNFVAAVSVGIVGGEYLLDLNYE 174
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
EDS +VD N VM D G VE+QG+AE FS+ +L+L + I LI QK+++
Sbjct: 175 EDSIAEVDMNIVMNDVGEFVELQGTAEGKPFSRKDLEKLLSLGEKGITKLILKQKEILG 233
>gi|289668014|ref|ZP_06489089.1| ribonuclease PH [Xanthomonas campestris pv. musacearum NCPPB4381]
Length = 241
Score = 178 bits (450), Expect = 7e-43, Method: Composition-based stats.
Identities = 122/238 (51%), Positives = 160/238 (67%), Gaps = 2/238 (0%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R SGR +Q+R + + R +++AEGS LV FGDT +L TA++E +VP ++R GW+TA
Sbjct: 5 RPSGRTADQLRPVRIERAFTRHAEGSVLVSFGDTRVLCTASVENRVPNFLRGKGEGWVTA 64
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
EYGMLPRST R REA G+QGGR+ EIQR+IGRALR+ VD +ALG R I +DCDV+QA
Sbjct: 65 EYGMLPRSTHTRSDREAARGKQGGRTLEIQRLIGRALRACVDRNALGERTITLDCDVLQA 124
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
DGGTRTAAITGA+VAL D + + L G VAA+S G+ G P++DLDY E
Sbjct: 125 DGGTRTAAITGAYVALADAVNLLLKR--GDIKKHPLIGAVAAVSVGIYRGEPVLDLDYPE 182
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
DS D D N VM D G +E+QG+AE F +D A+L LA+ + L LQ+ ++
Sbjct: 183 DSDCDTDMNVVMNDGGGFIELQGTAEGHAFRRDELNALLALAEKGMDALFALQRAALA 240
>gi|157827025|ref|YP_001496089.1| ribonuclease PH [Rickettsia bellii OSU 85-389]
gi|166228311|sp|A8GW25|RNPH_RICB8 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|157802329|gb|ABV79052.1| ribonuclease PH [Rickettsia bellii OSU 85-389]
Length = 239
Score = 178 bits (450), Expect = 7e-43, Method: Composition-based stats.
Identities = 127/238 (53%), Positives = 168/238 (70%), Gaps = 2/238 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR SGR+ NQ+R ISL AEGSCL+K G+TH++ +A+ + VP ++RN GWIT
Sbjct: 1 MRQSGRKSNQLRPISLELSPLINAEGSCLIKIGNTHVMCSASYDTTVPPFLRNQNRGWIT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEY MLP ST R KREAV G+Q GR+QEIQR+IGR +RS++DL LG RQI IDCDVI
Sbjct: 61 AEYSMLPGSTSQRNKREAVQGKQSGRTQEIQRLIGRTMRSIIDLQKLGERQITIDCDVIN 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTAAITG++VALH ++ + + + VAA+SCG+ PI+DLDY
Sbjct: 121 ADGGTRTAAITGSYVALHLAIRSLMKERILKVNPLINQ--VAAVSCGIYKDQPILDLDYL 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
EDS +VD+NFV +G+++E+QG+AE+ FS++ F ML LAK +A+L KLQ V+
Sbjct: 179 EDSDAEVDSNFVFAGNGNLIEIQGTAEKKPFSEEQFLEMLKLAKAGVAELFKLQNQVL 236
>gi|91205422|ref|YP_537777.1| ribonuclease PH [Rickettsia bellii RML369-C]
gi|122425711|sp|Q1RIX6|RNPH_RICBR RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|91068966|gb|ABE04688.1| Ribonuclease PH [Rickettsia bellii RML369-C]
Length = 239
Score = 178 bits (450), Expect = 7e-43, Method: Composition-based stats.
Identities = 127/238 (53%), Positives = 168/238 (70%), Gaps = 2/238 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR SGR+ NQ+R ISL AEGSCL+K G+TH++ +A+ + VP ++RN GWIT
Sbjct: 1 MRQSGRKSNQLRPISLELSPLINAEGSCLIKIGNTHVMCSASYDTTVPPFLRNQNRGWIT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEY MLP ST R KREAV G+Q GR+QEIQR+IGR +RS++DL LG RQI IDCDVI
Sbjct: 61 AEYSMLPGSTSQRNKREAVQGKQSGRTQEIQRLIGRTMRSIIDLQKLGERQITIDCDVIN 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTAAITG++VALH ++ + + + VAA+SCG+ PI+DLDY
Sbjct: 121 ADGGTRTAAITGSYVALHLAIRSLMKKRILKVNPLINQ--VAAVSCGIYKDQPILDLDYL 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
EDS +VD+NFV +G+++E+QG+AE+ FS++ F ML LAK +A+L KLQ V+
Sbjct: 179 EDSDAEVDSNFVFAGNGNLIEIQGTAEKKPFSEEQFLEMLKLAKAGVAELFKLQNQVL 236
>gi|149908596|ref|ZP_01897258.1| putative ribonuclease PH [Moritella sp. PE36]
gi|149808430|gb|EDM68367.1| putative ribonuclease PH [Moritella sp. PE36]
Length = 243
Score = 178 bits (450), Expect = 7e-43, Method: Composition-based stats.
Identities = 119/242 (49%), Positives = 159/242 (65%), Gaps = 2/242 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR S R Q+R +++TR + AEGS LV+FG T +L TAT+E+ VP +++ GW+T
Sbjct: 1 MRPSQRTLGQVRPVTITRNFTANAEGSVLVEFGGTKVLCTATVEKGVPRFLKGKGQGWVT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPRST R+ REA G+Q GR+ EIQR+I R+LR+ +DL +LG IIIDCDVIQ
Sbjct: 61 AEYGMLPRSTHKRMHREAARGQQTGRTMEIQRLIARSLRACIDLESLGEHTIIIDCDVIQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTAAITGA VAL D ++ + +K +AA+S G+ G + DLDY
Sbjct: 121 ADGGTRTAAITGACVALADAIEFLIRKGKLTVS--PIKFMIAAVSVGIYKGEAVCDLDYA 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
EDS + D N VMT++G +E+QG+AE FS + ML LAKD I +I QK + +
Sbjct: 179 EDSDAETDMNVVMTETGKFIEIQGTAEGVPFSHEEMLDMLALAKDGIEMIIIEQKKALGD 238
Query: 241 EV 242
+
Sbjct: 239 SL 240
>gi|83746454|ref|ZP_00943505.1| Ribonuclease PH [Ralstonia solanacearum UW551]
gi|207723807|ref|YP_002254205.1| ribonuclease ph (rnase ph) (trnanucleotidyltransferase) protein
[Ralstonia solanacearum MolK2]
gi|207743767|ref|YP_002260159.1| ribonuclease ph (rnase ph) (trnanucleotidyltransferase) protein
[Ralstonia solanacearum IPO1609]
gi|300703571|ref|YP_003745173.1| RNAse ph (tRNA nucleotidyltransferase) [Ralstonia solanacearum
CFBP2957]
gi|83726785|gb|EAP73912.1| Ribonuclease PH [Ralstonia solanacearum UW551]
gi|206589012|emb|CAQ35974.1| ribonuclease ph (rnase ph) (trnanucleotidyltransferase) protein
[Ralstonia solanacearum MolK2]
gi|206595166|emb|CAQ62093.1| ribonuclease ph (rnase ph) (trnanucleotidyltransferase) protein
[Ralstonia solanacearum IPO1609]
gi|299071234|emb|CBJ42552.1| RNase PH (tRNA nucleotidyltransferase) [Ralstonia solanacearum
CFBP2957]
Length = 238
Score = 178 bits (450), Expect = 7e-43, Method: Composition-based stats.
Identities = 126/239 (52%), Positives = 164/239 (68%), Gaps = 2/239 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR SGRQ +Q+R ++LTR +++AEGS LV FGDTH+L TA++ KVP + + GW+T
Sbjct: 1 MRPSGRQPDQLRSVTLTRHYTRHAEGSVLVCFGDTHVLCTASVLPKVPPHKKGSGEGWVT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPRST R REA G+Q GR+QEIQR+IGRA+RSV DLSALG + +DCDV+Q
Sbjct: 61 AEYGMLPRSTHTRSDREAARGKQSGRTQEIQRLIGRAMRSVFDLSALGEHTLHLDCDVLQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+ITGA+VA +D + + ++ VAA+S G++ G P++DLDY
Sbjct: 121 ADGGTRTASITGAFVAAYDAV--SVMRGKGLLTGEPIRDFVAAVSVGVVDGVPVLDLDYP 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
EDS D D N VMT +G VEVQG+AE F++ A+L LA I LI LQK +
Sbjct: 179 EDSACDTDMNVVMTGNGGFVEVQGTAEGTPFTRTEMDALLGLADQGIRTLIGLQKQALG 237
>gi|194367042|ref|YP_002029652.1| ribonuclease PH [Stenotrophomonas maltophilia R551-3]
gi|226736943|sp|B4SU06|RNPH_STRM5 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|194349846|gb|ACF52969.1| ribonuclease PH [Stenotrophomonas maltophilia R551-3]
Length = 241
Score = 178 bits (450), Expect = 7e-43, Method: Composition-based stats.
Identities = 119/238 (50%), Positives = 161/238 (67%), Gaps = 2/238 (0%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R SGRQ +Q+R + + R +++AEGS LV FG+T +L TA++E +VP ++R GW+TA
Sbjct: 5 RPSGRQPDQLRPVVIQRGFTRHAEGSVLVCFGETRVLCTASVENRVPGFLRGKGEGWVTA 64
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
EYGMLPR+T R REA G+QGGR+ EIQR+IGR+LR+ VD +ALG R I +DCDV+QA
Sbjct: 65 EYGMLPRATHTRSDREAARGKQGGRTLEIQRLIGRSLRACVDRNALGERTITLDCDVLQA 124
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
DGGTRTAAITGA+VAL D + + G VAA+S G+ G P++DLDY E
Sbjct: 125 DGGTRTAAITGAYVALVDAVN--VLMKRGDIKRNPILGAVAAVSVGVYRGTPVLDLDYAE 182
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
DS D D N VM D G +E+QG+AE F +D A+L LA+ + +L+ Q+ +S
Sbjct: 183 DSDCDTDMNVVMNDGGGFIELQGTAEGHAFRRDELDALLGLAEKGVRELLDAQQAALS 240
>gi|251773010|gb|EES53566.1| ribonuclease PH [Leptospirillum ferrodiazotrophum]
Length = 238
Score = 178 bits (450), Expect = 8e-43, Method: Composition-based stats.
Identities = 117/238 (49%), Positives = 162/238 (68%), Gaps = 2/238 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR GR +Q+R +S+ ++YAEGS L++ G TH+L T +LEEKVP ++++ GW+T
Sbjct: 1 MRSDGRTSDQLRTLSIDPSPNRYAEGSALIRMGFTHVLATVSLEEKVPPFLKDQGRGWVT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPRST R REA G+Q GR+QEIQR+IGR+LRSVV+ +G R IDCDVIQ
Sbjct: 61 AEYGMLPRSTHERSPREAARGKQSGRTQEIQRLIGRSLRSVVNFEKMGVRTATIDCDVIQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTR A+I GA+VAL +++ + V ++AA+S G++ G P +DL Y
Sbjct: 121 ADGGTRCASIGGAFVALALAFSNLKKVGVIAESPLV--DYLAAVSVGIVDGEPCLDLCYT 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
EDS DVD N VMT G +VEVQG+AE +FS+ +L+LA I++++ LQK ++
Sbjct: 179 EDSAADVDMNVVMTGKGELVEVQGTAEHRSFSRKEMDRLLDLAWKGISEIVDLQKRLV 236
>gi|269836459|ref|YP_003318687.1| ribonuclease PH [Sphaerobacter thermophilus DSM 20745]
gi|269785722|gb|ACZ37865.1| ribonuclease PH [Sphaerobacter thermophilus DSM 20745]
Length = 246
Score = 178 bits (450), Expect = 8e-43, Method: Composition-based stats.
Identities = 115/240 (47%), Positives = 159/240 (66%), Gaps = 4/240 (1%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R GR +++R +++ + YAEGS L+ G+TH+L TAT+EE+VP ++ GW+TA
Sbjct: 9 RPGGRANDELRPVTIQPGFAPYAEGSALITMGNTHVLCTATIEERVPPFLVGKGQGWVTA 68
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
EYGMLPRS+ R+ RE GGR+QEIQR+IGR+LR+V L LG R I+IDCDV++A
Sbjct: 69 EYGMLPRSSPQRIPRERSLT--GGRTQEIQRLIGRSLRAVTKLDLLGERTILIDCDVLRA 126
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
DGGTRTAAITG +VAL L+ + + L G+VAA+S G++ +DL+Y E
Sbjct: 127 DGGTRTAAITGGYVALRLALERLVRTGQLKAV--PLTGYVAAVSVGVVWDEVRLDLEYEE 184
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
DS +VD N VMTD G IVEVQG+AE F + AML+LA+ + L++ QK +S+
Sbjct: 185 DSQAEVDCNVVMTDRGDIVEVQGTAEGKPFPRARLDAMLDLAERGVRQLVEYQKAALSSH 244
>gi|289662153|ref|ZP_06483734.1| ribonuclease PH [Xanthomonas campestris pv. vasculorum NCPPB702]
Length = 240
Score = 178 bits (450), Expect = 8e-43, Method: Composition-based stats.
Identities = 122/238 (51%), Positives = 160/238 (67%), Gaps = 2/238 (0%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R SGR +Q+R + + R +++AEGS LV FGDT +L TA++E +VP ++R GW+TA
Sbjct: 5 RPSGRTADQLRPVRIERAFTRHAEGSVLVSFGDTRVLCTASVENRVPNFLRGKGEGWVTA 64
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
EYGMLPRST R REA G+QGGR+ EIQR+IGRALR+ VD +ALG R I +DCDV+QA
Sbjct: 65 EYGMLPRSTHTRSDREAARGKQGGRTLEIQRLIGRALRACVDRNALGERTITLDCDVLQA 124
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
DGGTRTAAITGA+VAL D + + L G VAA+S G+ G P++DLDY E
Sbjct: 125 DGGTRTAAITGAYVALADAVNLLLKR--GDIKKHPLIGAVAAVSVGIYRGEPVLDLDYPE 182
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
DS D D N VM D G +E+QG+AE F +D A+L LA+ + L LQ+ ++
Sbjct: 183 DSDCDTDMNVVMNDGGGFIELQGTAEGHAFRRDELNALLALAEKGMDALFALQRAALA 240
>gi|296134058|ref|YP_003641305.1| ribonuclease PH [Thermincola sp. JR]
gi|296032636|gb|ADG83404.1| ribonuclease PH [Thermincola potens JR]
Length = 239
Score = 178 bits (450), Expect = 8e-43, Method: Composition-based stats.
Identities = 117/239 (48%), Positives = 160/239 (66%), Gaps = 2/239 (0%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R GR +Q+R + +TR K+AEGS L++ GDT ++ TAT+E+KVP +++ GWITA
Sbjct: 3 RNDGRANDQLRPVKITRHYIKHAEGSVLIEMGDTKVICTATVEDKVPPFMKGEGKGWITA 62
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
EYGMLPRS R+ REA G+ GGR+ EIQR+IGR+LR+VVDL ALG R + +DCDVIQA
Sbjct: 63 EYGMLPRSAATRIPREAAKGKIGGRTYEIQRLIGRSLRAVVDLEALGERTVTVDCDVIQA 122
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
DGGTRTA+ITGA+VAL D L+H D + ++AA+S G + G ++DL + E
Sbjct: 123 DGGTRTASITGAFVALVDALRHQVD--QGVLEKFPVLDYMAAVSVGKVNGEILLDLAFSE 180
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
DS +VD N VMT G +EVQG+AE + F ++ L +A I LI+ Q +V+
Sbjct: 181 DSVAEVDMNVVMTRGGKFLEVQGTAEGSPFDREELEKFLEMAGKGIQQLIQAQMEVLGE 239
>gi|34763588|ref|ZP_00144521.1| RIBONUCLEASE PH; NUCLEOSIDE-TRIPHOSPHATASE [Fusobacterium nucleatum
subsp. vincentii ATCC 49256]
gi|27886731|gb|EAA23871.1| RIBONUCLEASE PH; NUCLEOSIDE-TRIPHOSPHATASE [Fusobacterium nucleatum
subsp. vincentii ATCC 49256]
Length = 434
Score = 178 bits (450), Expect = 8e-43, Method: Composition-based stats.
Identities = 109/241 (45%), Positives = 158/241 (65%), Gaps = 2/241 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+R GR+ ++ R+I +T+ V+ YAEGS L++ G+T ++ TA++ +KVP ++R T GW+T
Sbjct: 2 LREDGRKFDEERKIKITKDVNIYAEGSVLIEVGNTKVICTASVTDKVPSFLRGTGKGWVT 61
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEY MLPR+T R REA G+ GR+ EIQR+IGRALR+ +DL LG R I IDCDVIQ
Sbjct: 62 AEYSMLPRATNERNPREASKGKLSGRTVEIQRLIGRALRASIDLEKLGERLITIDCDVIQ 121
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRT +ITG ++AL ++ + D + + VAAIS G + +VDL Y
Sbjct: 122 ADGGTRTTSITGGYIALALAIKKLLDEEILEENPLISN--VAAISVGKINSELMVDLKYS 179
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
ED +VD N +M G +EVQG+ E +TF++ +L+LA++ I I+LQ +I+
Sbjct: 180 EDFAAEVDMNVIMNKKGEFIEVQGTGEESTFTRAELNQLLDLAENSIKRFIELQDKIINQ 239
Query: 241 E 241
E
Sbjct: 240 E 240
>gi|159046003|ref|YP_001534797.1| ribonuclease PH [Dinoroseobacter shibae DFL 12]
gi|189043761|sp|A8LPD1|RNPH_DINSH RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|157913763|gb|ABV95196.1| ribonuclease PH [Dinoroseobacter shibae DFL 12]
Length = 237
Score = 178 bits (450), Expect = 8e-43, Method: Composition-based stats.
Identities = 129/237 (54%), Positives = 173/237 (72%), Gaps = 2/237 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR SGRQ ++MR +S+ +++AEGSCL+ G+T +L TA++EE+VP ++RNT GW+T
Sbjct: 1 MRPSGRQTHEMRGVSIETGFTRHAEGSCLISMGETRVLCTASVEERVPPFLRNTGLGWVT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPR+T R +REA +G+Q GR+QEIQR+IGR+LR+ VD ALG RQI IDCDVIQ
Sbjct: 61 AEYGMLPRATHTRGRREAAAGKQSGRTQEIQRLIGRSLRAGVDRVALGERQITIDCDVIQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTR A+ITGAWVAL + + ++ L HVAA+SCG+ G P++DLDY
Sbjct: 121 ADGGTRCASITGAWVALRLAVNKLMKA--GDIITDPLTDHVAAVSCGLYAGQPVLDLDYA 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
EDS DANFVMT SG ++EVQGSAE A FS++ +++LA+ +A+L+ QK
Sbjct: 179 EDSEAGTDANFVMTGSGGLIEVQGSAEGAPFSRNALNTLMDLAEVGVAELVAAQKAA 235
>gi|83945049|ref|ZP_00957415.1| ribonuclease PH [Oceanicaulis alexandrii HTCC2633]
gi|83851831|gb|EAP89686.1| ribonuclease PH [Oceanicaulis alexandrii HTCC2633]
Length = 238
Score = 178 bits (450), Expect = 9e-43, Method: Composition-based stats.
Identities = 113/240 (47%), Positives = 161/240 (67%), Gaps = 2/240 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR GRQ + +R +S S YAEGSCL+ FG+T +L TA++E+ VP W+R GW+T
Sbjct: 1 MRPEGRQPDALRPLSFEMGWSPYAEGSCLISFGNTKVLCTASVEDNVPPWLRGQGKGWVT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
EY MLPR+T R +RE SG+ GR+QEIQR+IGR+LR+ VDL ALG RQI++DCDV+Q
Sbjct: 61 GEYSMLPRATHQRTRREVQSGKPSGRTQEIQRLIGRSLRAAVDLKALGERQIVVDCDVLQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTAAITGAW+AL + ++ + + + +AA+S G++ G ++DL+Y
Sbjct: 121 ADGGTRTAAITGAWLALKAAVAYLMEEDVLKADPVIAQ--IAAVSAGVVNGDCVLDLEYE 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
ED + DANFV+T +G ++EVQ +AE A +Q+ F + LA+ ++DL Q +
Sbjct: 179 EDRVAETDANFVLTSTGGVIEVQATAEDAPMTQEQFDQIFALARKGVSDLCAAQLKALGQ 238
>gi|294784524|ref|ZP_06749813.1| ribonuclease PH/Ham1 protein [Fusobacterium sp. 3_1_27]
gi|294487740|gb|EFG35099.1| ribonuclease PH/Ham1 protein [Fusobacterium sp. 3_1_27]
Length = 434
Score = 177 bits (449), Expect = 9e-43, Method: Composition-based stats.
Identities = 110/241 (45%), Positives = 158/241 (65%), Gaps = 2/241 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+R GR+ N+ R+I +T+ ++ YAEGS L++ G+T ++ TA++ +KVP ++R T GWIT
Sbjct: 2 LREDGRKFNEERKIKITKNINIYAEGSVLIEVGNTKVICTASVTDKVPSFLRGTGKGWIT 61
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEY MLPR+T R REA G+ GR+ EIQR+IGRALR+ +DL LG R I IDCDVIQ
Sbjct: 62 AEYSMLPRATNERNPREASKGKLSGRTVEIQRLIGRALRASIDLEKLGERLITIDCDVIQ 121
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRT +ITG ++AL ++ + D + + VAAIS G + +VDL Y
Sbjct: 122 ADGGTRTTSITGGYIALALAIKKLLDEEILEENPLISN--VAAISVGKINSELMVDLKYS 179
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
ED +VD N +M G +EVQG+ E +TF++ +L+LA++ I I+LQ +I+
Sbjct: 180 EDFAAEVDMNVIMNKKGEFIEVQGTGEESTFTRAELNQLLDLAENSIKRFIELQDKIINQ 239
Query: 241 E 241
E
Sbjct: 240 E 240
>gi|312880664|ref|ZP_07740464.1| RNAse PH [Aminomonas paucivorans DSM 12260]
gi|310783955|gb|EFQ24353.1| RNAse PH [Aminomonas paucivorans DSM 12260]
Length = 248
Score = 177 bits (449), Expect = 9e-43, Method: Composition-based stats.
Identities = 120/237 (50%), Positives = 163/237 (68%), Gaps = 2/237 (0%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R+ GR + +R + L R ++YAEGS + FG T +L TAT+E+KVP ++R + GW++A
Sbjct: 3 RIDGRSFDALRPLELERGCNRYAEGSARIAFGHTQVLCTATVEDKVPPFLRGSGKGWVSA 62
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
EY MLPR+T R R++ GR R QEIQR+IGR+LR+ VDL ALG R + IDCDVIQA
Sbjct: 63 EYAMLPRATHQRTPRDSTRGRPNARGQEIQRLIGRSLRAAVDLEALGERTVWIDCDVIQA 122
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
DGGTRTA+ITGA+VAL D L+ + D + S L+ VAA+S G+L G P++DL Y E
Sbjct: 123 DGGTRTASITGAFVALVDALRWIRDRNGLP--SLPLRHQVAAVSVGLLGGCPLLDLCYEE 180
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
DS +VD N VM + G VE+QG+ E A FS+ F A+L+LA+ IA L +LQ+ +
Sbjct: 181 DSGAEVDCNVVMAEDGRFVEIQGTGEDALFSRASFDALLDLARQGIAALHRLQRSTL 237
>gi|262273502|ref|ZP_06051316.1| ribonuclease PH [Grimontia hollisae CIP 101886]
gi|262222480|gb|EEY73791.1| ribonuclease PH [Grimontia hollisae CIP 101886]
Length = 238
Score = 177 bits (449), Expect = 9e-43, Method: Composition-based stats.
Identities = 123/238 (51%), Positives = 163/238 (68%), Gaps = 2/238 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR SGR+ Q+R +++TR + +AEGS LV FGDT ++ TA++EE VP +++ GWIT
Sbjct: 1 MRPSGREVGQIRPVTITRHFTAHAEGSVLVAFGDTKVICTASVEEGVPRFLKGKGQGWIT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPR+T R +REA +G+QGGR+ EIQR+I R+LR+ VDL LG I +DCDVIQ
Sbjct: 61 AEYGMLPRATHTRNRREAANGKQGGRTMEIQRLIARSLRAAVDLEKLGDFTITVDCDVIQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+ITGA VAL D L + +KGHVAA+S G+ G PI DL+Y
Sbjct: 121 ADGGTRTASITGASVALADALNKLVSE--GKLKENPMKGHVAAVSVGIFEGTPICDLEYV 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
EDS D D N VM + G ++EVQG+AE F+ + AML+LA I D++ +QK +
Sbjct: 179 EDSAADTDMNVVMLEDGRMIEVQGTAEAEPFTAEELNAMLSLAAKGIQDIVAIQKASL 236
>gi|312899597|ref|ZP_07758923.1| ribonuclease PH [Enterococcus faecalis TX0470]
gi|311293276|gb|EFQ71832.1| ribonuclease PH [Enterococcus faecalis TX0470]
Length = 451
Score = 177 bits (449), Expect = 1e-42, Method: Composition-based stats.
Identities = 119/247 (48%), Positives = 158/247 (63%), Gaps = 7/247 (2%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+R R ++R+I++ V K+ EGS ++ FGDT ++ +AT+EEKVP ++R GW+
Sbjct: 2 IRHDSRAPKELRKITIETNVFKHPEGSVVISFGDTKVICSATVEEKVPPFLRGAGTGWVA 61
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEY MLPR+T R RE+ G+ GR+ EIQR+IGR+LR+VVDL LG R I++DCDVIQ
Sbjct: 62 AEYSMLPRATNTRNIRESAKGKLTGRTMEIQRLIGRSLRAVVDLEKLGERSIVVDCDVIQ 121
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPI-VDLDY 179
ADGGTRTA+ITGA+VAL + +K H+AA+S G+L +DLDY
Sbjct: 122 ADGGTRTASITGAFVALRLAIN--HLLMTGALAEDPIKEHLAAVSVGILPDGYCVLDLDY 179
Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI- 238
EDS VD N VMT+SG VE+QG+ E ATFS D AML K I +LI QK+ +
Sbjct: 180 AEDSNAAVDMNIVMTESGEFVEIQGTGEEATFSGDELNAMLFYGKTGIEELIAYQKEALY 239
Query: 239 ---SNEV 242
S EV
Sbjct: 240 ALASEEV 246
>gi|262370973|ref|ZP_06064296.1| ribonuclease PH [Acinetobacter johnsonii SH046]
gi|262314049|gb|EEY95093.1| ribonuclease PH [Acinetobacter johnsonii SH046]
Length = 238
Score = 177 bits (449), Expect = 1e-42, Method: Composition-based stats.
Identities = 119/239 (49%), Positives = 161/239 (67%), Gaps = 2/239 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR+ R +Q+R++++TR ++YAEGS LV+FG T +L TA+++ VP +++ GW+T
Sbjct: 1 MRIDQRTLDQLRDVTITRNYTRYAEGSVLVEFGHTKVLCTASIDNSVPRFLKGKGQGWVT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPRST R REA G+Q GR+QEIQR+IGR+LR++VDL LG I IDCDVIQ
Sbjct: 61 AEYGMLPRSTHTRSDREAARGKQSGRTQEIQRLIGRSLRAMVDLKKLGENTITIDCDVIQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTAAITGA VAL D + + + K LKG VAAIS G+ ++DL Y
Sbjct: 121 ADGGTRTAAITGAAVALIDAMNTLLEK--KKIKQDPLKGLVAAISVGIFQDEVLLDLCYE 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
EDS D N VMT +G +E+QG+AE F++ AML +A+ I +L+K Q+ +
Sbjct: 179 EDSNCQTDLNVVMTQAGEFIEIQGTAEDKPFTRVQCNAMLEMAEKGIQELVKKQQQALG 237
>gi|254448548|ref|ZP_05062008.1| ribonuclease PH [gamma proteobacterium HTCC5015]
gi|198261931|gb|EDY86216.1| ribonuclease PH [gamma proteobacterium HTCC5015]
Length = 240
Score = 177 bits (449), Expect = 1e-42, Method: Composition-based stats.
Identities = 122/239 (51%), Positives = 174/239 (72%), Gaps = 2/239 (0%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R SGRQ +Q+R++ LTR+ + +AEGS LV+FG+T ++ TA++EE+VP +++ GW+TA
Sbjct: 4 RPSGRQADQLRDVRLTRQYTCHAEGSVLVEFGNTKVICTASVEERVPPFLKGQGQGWVTA 63
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
EYGMLPRSTG+R+ REA G+Q GR+QEIQR+IGR+LR+ +DL ALG RQI +DCDVIQA
Sbjct: 64 EYGMLPRSTGSRMGREAARGKQSGRTQEIQRLIGRSLRAAIDLEALGERQITLDCDVIQA 123
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
DGGTRTA+ITGA+VAL D + + + + + + VA+IS G+ G P++DLDY E
Sbjct: 124 DGGTRTASITGAFVALTDAVNQLINDGKLSKSPLLGQ--VASISVGIYEGTPVLDLDYPE 181
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
DS + D N VM D+GH +EVQG+AE F ++ +L+LA I +L ++QK ++
Sbjct: 182 DSNAETDMNVVMNDAGHFIEVQGTAEGHAFRREELNQLLDLADKGIRELFEVQKAALAK 240
>gi|171910497|ref|ZP_02925967.1| ribonuclease PH [Verrucomicrobium spinosum DSM 4136]
Length = 269
Score = 177 bits (449), Expect = 1e-42, Method: Composition-based stats.
Identities = 117/243 (48%), Positives = 154/243 (63%), Gaps = 4/243 (1%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIR--NTKHGWI 59
R R +Q+R +S ++ +A GS LV FG+T ++ AT++E+VP W++ GW+
Sbjct: 3 RSDQRTPDQLRNVSFQLDIAPHATGSVLVSFGNTKVICAATIQEEVPRWMKAQGVSGGWL 62
Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119
TAEY MLP ST +R R+ G+ GRSQEIQR+IGR+LR+VVDL LG R + IDCDV+
Sbjct: 63 TAEYSMLPYSTLDRKDRDISKGKLDGRSQEIQRLIGRSLRAVVDLEKLGPRTLWIDCDVL 122
Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179
QADGGTRTA+ITGA VA + + Q LK VAAIS G+ ++DL Y
Sbjct: 123 QADGGTRTASITGACVASAIAFNRLLEK--GVLRQQPLKKKVAAISVGIFRNQALLDLCY 180
Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
ED DVD N VMT+ G VE+QGS E +TFS+ AML L K I +L KLQ +VI+
Sbjct: 181 EEDRDADVDCNLVMTEDGQFVEIQGSGEESTFSEAQLSAMLTLGKKGIVELCKLQAEVIN 240
Query: 240 NEV 242
+ V
Sbjct: 241 SAV 243
>gi|253583583|ref|ZP_04860781.1| ribonuclease PH [Fusobacterium varium ATCC 27725]
gi|251834155|gb|EES62718.1| ribonuclease PH [Fusobacterium varium ATCC 27725]
Length = 254
Score = 177 bits (449), Expect = 1e-42, Method: Composition-based stats.
Identities = 109/240 (45%), Positives = 163/240 (67%), Gaps = 2/240 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+R GR+ + +REI +T+ + YAEGS L++FG+T ++ TA++ +KVP ++R GW+T
Sbjct: 17 LREDGRKVDSLREIKITKDFNLYAEGSVLIEFGNTKVICTASVSDKVPPFMRGQGKGWLT 76
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEY M+PR+TG R +RE+ G+ GR+ EIQR+IGRALR+ VDL LG R I IDCDVIQ
Sbjct: 77 AEYSMIPRATGERNQRESAKGKLSGRTMEIQRLIGRALRTAVDLDKLGERTITIDCDVIQ 136
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRT +I+G ++AL ++ + + + +VAAIS G++ G P++DL Y
Sbjct: 137 ADGGTRTTSISGGFIALALAVKKLMKD--RVLSVNPIVSNVAAISVGIVRGTPMLDLMYT 194
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
EDS +VD N VM G VEVQG+ E AT+++ +++LA+ I ++I+LQ ++I
Sbjct: 195 EDSAAEVDMNVVMNGKGEFVEVQGTGEEATYTRKELNELIDLAEVGIKEIIRLQNEIIGE 254
>gi|138896231|ref|YP_001126684.1| ribonuclease PH [Geobacillus thermodenitrificans NG80-2]
gi|196250189|ref|ZP_03148883.1| ribonuclease PH [Geobacillus sp. G11MC16]
gi|166228283|sp|A4IRI5|RNPH_GEOTN RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|134267744|gb|ABO67939.1| Ribonuclease PH [Geobacillus thermodenitrificans NG80-2]
gi|196210373|gb|EDY05138.1| ribonuclease PH [Geobacillus sp. G11MC16]
Length = 255
Score = 177 bits (449), Expect = 1e-42, Method: Composition-based stats.
Identities = 113/241 (46%), Positives = 150/241 (62%), Gaps = 1/241 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR GR ++R + + K+AEGS L++ GDT ++ TAT+E+KVP ++R GWIT
Sbjct: 1 MRTDGRNNRELRPVHIQPHYIKHAEGSVLIEIGDTRVICTATVEDKVPPFMRGGGKGWIT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPR+T R REA G+ GR+ EIQR+IGRALRSVV+L LG R + IDCDVIQ
Sbjct: 61 AEYGMLPRATEQRNAREASKGKVSGRTMEIQRLIGRALRSVVELEQLGERTVWIDCDVIQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+ITGA+VAL L + K + V A I+DL+Y
Sbjct: 121 ADGGTRTASITGAYVALVLALSKLVAEG-KLESLPVRDFLAATSVGIDPEHGVILDLNYS 179
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
ED+ VD N VMT +G VE+QG+ E A+FS+ +L A+ I LI +Q+ V+
Sbjct: 180 EDARAKVDMNVVMTGAGQFVEIQGTGEEASFSRAELEELLETAQLGIEQLITIQRRVLGE 239
Query: 241 E 241
+
Sbjct: 240 Q 240
>gi|312903655|ref|ZP_07762831.1| ribonuclease PH [Enterococcus faecalis TX0635]
gi|310633008|gb|EFQ16291.1| ribonuclease PH [Enterococcus faecalis TX0635]
Length = 451
Score = 177 bits (449), Expect = 1e-42, Method: Composition-based stats.
Identities = 120/247 (48%), Positives = 158/247 (63%), Gaps = 7/247 (2%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+R R ++R+I++ V K+ EGS ++ FGDT ++ +AT+EEKVP ++R GWI
Sbjct: 2 IRHDSRAPKELRKITIETNVFKHPEGSVVISFGDTKVICSATVEEKVPPFLRGAGTGWIA 61
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEY MLPR+T R RE+ G+ GR+ EIQR+IGR+LR+VVDL LG R I++DCDVIQ
Sbjct: 62 AEYSMLPRATNTRNIRESAKGKLTGRTMEIQRLIGRSLRAVVDLEKLGERSIVVDCDVIQ 121
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPI-VDLDY 179
ADGGTRTA+ITGA+VAL + +K H+AA+S G+L +DLDY
Sbjct: 122 ADGGTRTASITGAFVALRLAVN--HLLMTGALAEDPIKEHLAAVSVGILPDGYCVLDLDY 179
Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI- 238
EDS VD N VMT+SG VE+QG+ E ATFS D AML K I +LI QK+ +
Sbjct: 180 AEDSNAAVDMNIVMTESGEFVEIQGTGEEATFSGDELNAMLFYGKTGIEELIAYQKEALY 239
Query: 239 ---SNEV 242
S EV
Sbjct: 240 ALASEEV 246
>gi|315079375|gb|EFT51373.1| ribonuclease PH [Propionibacterium acnes HL053PA2]
Length = 254
Score = 177 bits (449), Expect = 1e-42, Method: Composition-based stats.
Identities = 110/238 (46%), Positives = 155/238 (65%), Gaps = 2/238 (0%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R+ GR+ +Q+R++ + R AEGS LV FG T +L A++ E VP W + + GW+TA
Sbjct: 16 RIDGRRLDQLRDVRIERGWLSQAEGSVLVSFGRTTVLCNASVTEGVPRWRKGSGLGWVTA 75
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
EY MLPR+T R RE+ G+ GGR+ EI R++GR+LR+VVD ALG II+DCDV+QA
Sbjct: 76 EYEMLPRATNERSGRESRKGKVGGRTHEISRLVGRSLRAVVDDKALGENTIILDCDVLQA 135
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
DGGTRTA+ITGA+VAL D + + +S+ + G V AIS G++ G P++DL Y E
Sbjct: 136 DGGTRTASITGAYVALVDAVNWLR--GRGGLVSEPITGSVQAISVGVVDGIPMLDLAYEE 193
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
DS D D N VM+ SG VE+QG+AE F+++ +L+LA A L + Q + +
Sbjct: 194 DSRADTDMNVVMSGSGDFVEIQGTAEGTPFNRNLLNELLDLASGGCATLKQAQSEALG 251
>gi|255528421|ref|ZP_05395219.1| ribonuclease PH [Clostridium carboxidivorans P7]
gi|296184854|ref|ZP_06853265.1| ribonuclease PH [Clostridium carboxidivorans P7]
gi|255507888|gb|EET84330.1| ribonuclease PH [Clostridium carboxidivorans P7]
gi|296050636|gb|EFG90059.1| ribonuclease PH [Clostridium carboxidivorans P7]
Length = 249
Score = 177 bits (449), Expect = 1e-42, Method: Composition-based stats.
Identities = 110/239 (46%), Positives = 161/239 (67%), Gaps = 2/239 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR+ GR+ +Q+R +TR +KYAEGS L++ GDT ++ TA++E+KVP +++ GWIT
Sbjct: 1 MRIDGRKNDQIRHTKITRNYTKYAEGSVLIEAGDTKVICTASIEDKVPPFLKGKGEGWIT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
EY M+PRST R R+ G+ GR+ EIQR+IGRALRSVVDL ++G + I IDCDVIQ
Sbjct: 61 CEYNMIPRSTKVRKVRDINRGKIDGRTMEIQRIIGRALRSVVDLKSIGEKTIWIDCDVIQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+I+GA++AL D + + + ++ V AIS G++ ++DL Y
Sbjct: 121 ADGGTRTASISGAFIALVDAVNKLHKQTPFNV--YPVRDFVGAISVGIVGNVKMLDLCYE 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
EDS +VD N VMTDSG +E+QG+ E FS+ +L+LA+ I +I+++K+ +
Sbjct: 179 EDSKANVDMNVVMTDSGEFIEIQGTGEEKPFSKQDLSELLSLAEQGINHVIQIEKESLK 237
>gi|300024890|ref|YP_003757501.1| ribonuclease PH [Hyphomicrobium denitrificans ATCC 51888]
gi|299526711|gb|ADJ25180.1| ribonuclease PH [Hyphomicrobium denitrificans ATCC 51888]
Length = 237
Score = 177 bits (449), Expect = 1e-42, Method: Composition-based stats.
Identities = 136/235 (57%), Positives = 177/235 (75%), Gaps = 2/235 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR S R+ +++R +S+ R VSK+AEGSCL+KFGDTH+L TA+LEE++P W++ GW+T
Sbjct: 1 MRPSKRKPDELRRVSIERAVSKHAEGSCLIKFGDTHVLCTASLEERLPQWLKGQGRGWVT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEY MLPR+T R +RE SG GR+QEIQR++GRALR+VVDL LG RQI +DCDVIQ
Sbjct: 61 AEYSMLPRATHERTRREVTSGHPSGRTQEIQRLVGRALRAVVDLPKLGERQITVDCDVIQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+ITGAWVALHDC+Q M+ + HVAA+SCG+ G P++DLDY
Sbjct: 121 ADGGTRTASITGAWVALHDCIQWMKMRDMVKDGVL--RDHVAAVSCGIYKGDPVLDLDYA 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
EDS D D+NFVMT +G IVE+QG+AE F+++ F +L LAK I +L++LQK
Sbjct: 179 EDSNADADSNFVMTGTGGIVEIQGTAETTPFTEERFGDLLTLAKKGIGELVQLQK 233
>gi|254487308|ref|ZP_05100513.1| ribonuclease PH [Roseobacter sp. GAI101]
gi|214044177|gb|EEB84815.1| ribonuclease PH [Roseobacter sp. GAI101]
Length = 237
Score = 177 bits (449), Expect = 1e-42, Method: Composition-based stats.
Identities = 122/237 (51%), Positives = 173/237 (72%), Gaps = 2/237 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR SGR+ ++MR +S+ +K+AEGS L+K G TH+L TAT+E++VP +I+ + GW+T
Sbjct: 1 MRPSGRKLDEMRAVSVDTDFTKHAEGSALIKMGGTHVLCTATIEDRVPPFIKGSGLGWVT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPR+T R++REA G+QGGR+ EIQR+IGRALR+ VD SALG RQI IDCDV+Q
Sbjct: 61 AEYGMLPRATNTRMRREAAMGKQGGRTVEIQRLIGRALRAGVDRSALGERQITIDCDVLQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTR A+ITG W+AL + + ++ L VAAISCG+ G ++DLDY
Sbjct: 121 ADGGTRCASITGGWIALKLAVNKLMKA--GDVVNDPLADPVAAISCGIYAGQSVLDLDYP 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
EDS VD NF+MT +G ++E+Q SAE +T+S+D +++LA+ +++L+++QK V
Sbjct: 179 EDSEAGVDGNFIMTGTGRLIEIQMSAEGSTYSRDQMNQLMDLAEKGVSELVEIQKAV 235
>gi|257085617|ref|ZP_05579978.1| ribonuclease PH/Ham1 protein [Enterococcus faecalis Fly1]
gi|256993647|gb|EEU80949.1| ribonuclease PH/Ham1 protein [Enterococcus faecalis Fly1]
Length = 451
Score = 177 bits (449), Expect = 1e-42, Method: Composition-based stats.
Identities = 119/247 (48%), Positives = 158/247 (63%), Gaps = 7/247 (2%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+R R ++R+I++ V K+ EGS ++ FGDT ++ +AT+EEKVP ++R GW+
Sbjct: 2 IRHDSRAPKELRKITIETNVFKHPEGSVVISFGDTKVICSATVEEKVPPFLRGGGTGWVA 61
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEY MLPR+T R RE+ G+ GR+ EIQR+IGR+LR+VVDL LG R I++DCDVIQ
Sbjct: 62 AEYSMLPRATNTRNIRESAKGKLTGRTMEIQRLIGRSLRAVVDLEKLGERSIVVDCDVIQ 121
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPI-VDLDY 179
ADGGTRTA+ITGA+VAL + +K H+AA+S G+L +DLDY
Sbjct: 122 ADGGTRTASITGAFVALRLAVN--HLLMTGALAEDPIKEHLAAVSVGILPDGYCVLDLDY 179
Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI- 238
EDS VD N VMT+SG VE+QG+ E ATFS D AML K I +LI QK+ +
Sbjct: 180 AEDSNAAVDMNIVMTESGEFVEIQGTGEEATFSGDELNAMLFYGKTGIEELIAYQKEALY 239
Query: 239 ---SNEV 242
S EV
Sbjct: 240 ALASEEV 246
>gi|188996466|ref|YP_001930717.1| ribonuclease PH [Sulfurihydrogenibium sp. YO3AOP1]
gi|226736945|sp|B2V890|RNPH_SULSY RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|188931533|gb|ACD66163.1| ribonuclease PH [Sulfurihydrogenibium sp. YO3AOP1]
Length = 257
Score = 177 bits (449), Expect = 1e-42, Method: Composition-based stats.
Identities = 115/239 (48%), Positives = 155/239 (64%), Gaps = 2/239 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR GR+ Q+R I + R + YAEGS L++FG+T ++ TA++E+KVP +++ T GWIT
Sbjct: 1 MRPDGRKPAQLRPIKIIRDFNIYAEGSVLIEFGNTKVIVTASVEDKVPPFLKGTGQGWIT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEY M+PR++ R RE V G GR+ EIQR+IGR+LR+ VDL LG + I IDCDVIQ
Sbjct: 61 AEYSMIPRASETRSLREVVRGSPSGRTHEIQRLIGRSLRAAVDLKKLGEKTIWIDCDVIQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTR A+ITGA++A+ D + + + LK +VAAIS G + ++DL+Y
Sbjct: 121 ADGGTRVASITGAFIAVADACIKLTKQN--LVKANPLKDYVAAISVGKVRNEIVLDLNYT 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
EDS VD N VMT G VE+ + E TFSQ+ F ML K I LIK+QK+ I
Sbjct: 179 EDSNAQVDMNLVMTGKGEFVEIGATGEENTFSQEDFNKMLEYGKSGIERLIKIQKEFIE 237
>gi|29375698|ref|NP_814852.1| ribonuclease PH/Ham1 protein [Enterococcus faecalis V583]
gi|256962282|ref|ZP_05566453.1| ribonuclease PH/Ham1 protein [Enterococcus faecalis Merz96]
gi|257418951|ref|ZP_05595945.1| ribonuclease PH/Ham1 [Enterococcus faecalis T11]
gi|293383311|ref|ZP_06629226.1| ribonuclease PH/Ham1 protein [Enterococcus faecalis R712]
gi|293387532|ref|ZP_06632081.1| ribonuclease PH/Ham1 protein [Enterococcus faecalis S613]
gi|312905818|ref|ZP_07764838.1| ribonuclease PH [Enterococcus faecalis DAPTO 512]
gi|312909127|ref|ZP_07767986.1| ribonuclease PH [Enterococcus faecalis DAPTO 516]
gi|29343159|gb|AAO80922.1| ribonuclease PH/Ham1 protein [Enterococcus faecalis V583]
gi|256952778|gb|EEU69410.1| ribonuclease PH/Ham1 protein [Enterococcus faecalis Merz96]
gi|257160779|gb|EEU90739.1| ribonuclease PH/Ham1 [Enterococcus faecalis T11]
gi|291079334|gb|EFE16698.1| ribonuclease PH/Ham1 protein [Enterococcus faecalis R712]
gi|291083042|gb|EFE20005.1| ribonuclease PH/Ham1 protein [Enterococcus faecalis S613]
gi|310628157|gb|EFQ11440.1| ribonuclease PH [Enterococcus faecalis DAPTO 512]
gi|311290551|gb|EFQ69107.1| ribonuclease PH [Enterococcus faecalis DAPTO 516]
gi|315174641|gb|EFU18658.1| ribonuclease PH [Enterococcus faecalis TX1346]
gi|315573714|gb|EFU85905.1| ribonuclease PH [Enterococcus faecalis TX0309B]
gi|315582671|gb|EFU94862.1| ribonuclease PH [Enterococcus faecalis TX0309A]
gi|327534753|gb|AEA93587.1| ribonuclease PH/Ham1 protein [Enterococcus faecalis OG1RF]
Length = 451
Score = 177 bits (449), Expect = 1e-42, Method: Composition-based stats.
Identities = 119/247 (48%), Positives = 158/247 (63%), Gaps = 7/247 (2%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+R R ++R+I++ V K+ EGS ++ FGDT ++ +AT+EEKVP ++R GW+
Sbjct: 2 IRHDSRAPKELRKITIETNVFKHPEGSVVISFGDTKVICSATVEEKVPPFLRGGGTGWVA 61
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEY MLPR+T R RE+ G+ GR+ EIQR+IGR+LR+VVDL LG R I++DCDVIQ
Sbjct: 62 AEYSMLPRATNTRNIRESAKGKLTGRTMEIQRLIGRSLRAVVDLEKLGERSIVVDCDVIQ 121
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPI-VDLDY 179
ADGGTRTA+ITGA+VAL + +K H+AA+S G+L +DLDY
Sbjct: 122 ADGGTRTASITGAFVALRLAVN--HLLMTGALAEDPIKEHLAAVSVGILPDGYCVLDLDY 179
Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI- 238
EDS VD N VMT+SG VE+QG+ E ATFS D AML K I +LI QK+ +
Sbjct: 180 AEDSNAAVDMNIVMTESGEFVEIQGTGEEATFSGDELNAMLFYGKTGIEELIAYQKEALY 239
Query: 239 ---SNEV 242
S EV
Sbjct: 240 ALASEEV 246
>gi|315121831|ref|YP_004062320.1| ribonuclease PH [Candidatus Liberibacter solanacearum CLso-ZC1]
gi|313495233|gb|ADR51832.1| ribonuclease PH [Candidatus Liberibacter solanacearum CLso-ZC1]
Length = 250
Score = 177 bits (449), Expect = 1e-42, Method: Composition-based stats.
Identities = 202/239 (84%), Positives = 228/239 (95%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MRL GR+ENQMREIS TR +SK+AEGSCLVKFG+THLLTTATLEEKVP+W+RNTK+GWIT
Sbjct: 3 MRLLGRKENQMREISFTRGISKHAEGSCLVKFGETHLLTTATLEEKVPIWLRNTKNGWIT 62
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPRSTG+R+KREAVSGRQGGR+QEIQR+IGR+LRS+VDLSALG RQIIIDCDVIQ
Sbjct: 63 AEYGMLPRSTGSRIKREAVSGRQGGRTQEIQRLIGRSLRSIVDLSALGPRQIIIDCDVIQ 122
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTAAITGAW+ALHDCLQHMED ++KFQLSQVLKGHVAAISCG+L G PIVDL+Y
Sbjct: 123 ADGGTRTAAITGAWIALHDCLQHMEDRNSKFQLSQVLKGHVAAISCGILSGNPIVDLNYE 182
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
EDS+ID DANFVMTD+G+IVE+Q SAE+ATFSQD FF+MLNLAKDRI+DLI+LQKDVIS
Sbjct: 183 EDSSIDADANFVMTDAGNIVEIQVSAEKATFSQDQFFSMLNLAKDRISDLIRLQKDVIS 241
>gi|307268764|ref|ZP_07550132.1| ribonuclease PH [Enterococcus faecalis TX4248]
gi|306514892|gb|EFM83439.1| ribonuclease PH [Enterococcus faecalis TX4248]
Length = 451
Score = 177 bits (449), Expect = 1e-42, Method: Composition-based stats.
Identities = 119/247 (48%), Positives = 158/247 (63%), Gaps = 7/247 (2%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+R R ++R+I++ V K+ EGS ++ FGDT ++ +AT+EEKVP ++R GW+
Sbjct: 2 IRHDSRAPKELRKITIETNVFKHPEGSVVISFGDTKVICSATVEEKVPPFLRGAGTGWVA 61
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEY MLPR+T R RE+ G+ GR+ EIQR+IGR+LR+VVDL LG R I++DCDVIQ
Sbjct: 62 AEYSMLPRATNTRNIRESAKGKLTGRTMEIQRLIGRSLRAVVDLEKLGERSIVVDCDVIQ 121
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPI-VDLDY 179
ADGGTRTA+ITGA+VAL + +K H+AA+S G+L +DLDY
Sbjct: 122 ADGGTRTASITGAFVALRLAVN--HLLMTGALAEDPIKEHLAAVSVGILPDGYCVLDLDY 179
Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI- 238
EDS VD N VMT+SG VE+QG+ E ATFS D AML K I +LI QK+ +
Sbjct: 180 AEDSNAAVDMNIVMTESGEFVEIQGTGEEATFSGDELNAMLFYGKTGIEELIAYQKEALY 239
Query: 239 ---SNEV 242
S EV
Sbjct: 240 ALASEEV 246
>gi|256618706|ref|ZP_05475552.1| ribonuclease PH/Ham1 protein [Enterococcus faecalis ATCC 4200]
gi|257089534|ref|ZP_05583895.1| ribonuclease PH [Enterococcus faecalis CH188]
gi|256598233|gb|EEU17409.1| ribonuclease PH/Ham1 protein [Enterococcus faecalis ATCC 4200]
gi|256998346|gb|EEU84866.1| ribonuclease PH [Enterococcus faecalis CH188]
gi|315577483|gb|EFU89674.1| ribonuclease PH [Enterococcus faecalis TX0630]
Length = 451
Score = 177 bits (449), Expect = 1e-42, Method: Composition-based stats.
Identities = 119/247 (48%), Positives = 158/247 (63%), Gaps = 7/247 (2%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+R R ++R+I++ V K+ EGS ++ FGDT ++ +AT+EEKVP ++R GW+
Sbjct: 2 IRHDSRAPKELRKITIETNVFKHPEGSVVISFGDTKVICSATVEEKVPPFLRGAGTGWVA 61
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEY MLPR+T R RE+ G+ GR+ EIQR+IGR+LR+VVDL LG R I++DCDVIQ
Sbjct: 62 AEYSMLPRATNTRNIRESAKGKLTGRTMEIQRLIGRSLRAVVDLEKLGERSIVVDCDVIQ 121
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPI-VDLDY 179
ADGGTRTA+ITGA+VAL + +K H+AA+S G+L +DLDY
Sbjct: 122 ADGGTRTASITGAFVALRLAVN--HLLMTGALAEDPIKEHLAAVSVGILPDGYCVLDLDY 179
Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI- 238
EDS VD N VMT+SG VE+QG+ E ATFS D AML K I +LI QK+ +
Sbjct: 180 AEDSNAAVDMNIVMTESGEFVEIQGTGEEATFSGDELNAMLFYGKTGIEELIAYQKEALY 239
Query: 239 ---SNEV 242
S EV
Sbjct: 240 ALASEEV 246
>gi|229546199|ref|ZP_04434924.1| tRNA nucleotidyltransferase [Enterococcus faecalis TX1322]
gi|229550384|ref|ZP_04439109.1| tRNA nucleotidyltransferase [Enterococcus faecalis ATCC 29200]
gi|255973155|ref|ZP_05423741.1| ribonuclease PH/Ham1 protein [Enterococcus faecalis T1]
gi|255976198|ref|ZP_05426784.1| ribonuclease PH/Ham1 protein [Enterococcus faecalis T2]
gi|256762130|ref|ZP_05502710.1| ribonuclease PH/Ham1 protein [Enterococcus faecalis T3]
gi|256852772|ref|ZP_05558142.1| ribonuclease PH/Ham1 protein [Enterococcus faecalis T8]
gi|256958619|ref|ZP_05562790.1| ribonuclease PH/Ham1 protein [Enterococcus faecalis DS5]
gi|256965477|ref|ZP_05569648.1| ribonuclease PH/Ham1 protein [Enterococcus faecalis HIP11704]
gi|257078027|ref|ZP_05572388.1| ribonuclease PH/Ham1 protein [Enterococcus faecalis JH1]
gi|257082915|ref|ZP_05577276.1| ribonuclease PH/Ham1 protein [Enterococcus faecalis E1Sol]
gi|257086477|ref|ZP_05580838.1| ribonuclease PH/Ham1 protein [Enterococcus faecalis D6]
gi|257415736|ref|ZP_05592730.1| ribonuclease PH/Ham1 protein [Enterococcus faecalis AR01/DG]
gi|257422961|ref|ZP_05599951.1| ribonuclease PH [Enterococcus faecalis X98]
gi|294780993|ref|ZP_06746345.1| tRNA nucleotidyltransferase [Enterococcus faecalis PC1.1]
gi|300860046|ref|ZP_07106134.1| tRNA nucleotidyltransferase [Enterococcus faecalis TUSoD Ef11]
gi|307273813|ref|ZP_07555035.1| ribonuclease PH [Enterococcus faecalis TX0855]
gi|307274576|ref|ZP_07555756.1| ribonuclease PH [Enterococcus faecalis TX2134]
gi|307278842|ref|ZP_07559905.1| ribonuclease PH [Enterococcus faecalis TX0860]
gi|307288573|ref|ZP_07568557.1| ribonuclease PH [Enterococcus faecalis TX0109]
gi|307291105|ref|ZP_07570990.1| ribonuclease PH [Enterococcus faecalis TX0411]
gi|312951374|ref|ZP_07770272.1| ribonuclease PH [Enterococcus faecalis TX0102]
gi|229304506|gb|EEN70502.1| tRNA nucleotidyltransferase [Enterococcus faecalis ATCC 29200]
gi|229308723|gb|EEN74710.1| tRNA nucleotidyltransferase [Enterococcus faecalis TX1322]
gi|255964173|gb|EET96649.1| ribonuclease PH/Ham1 protein [Enterococcus faecalis T1]
gi|255969070|gb|EET99692.1| ribonuclease PH/Ham1 protein [Enterococcus faecalis T2]
gi|256683381|gb|EEU23076.1| ribonuclease PH/Ham1 protein [Enterococcus faecalis T3]
gi|256711231|gb|EEU26269.1| ribonuclease PH/Ham1 protein [Enterococcus faecalis T8]
gi|256949115|gb|EEU65747.1| ribonuclease PH/Ham1 protein [Enterococcus faecalis DS5]
gi|256955973|gb|EEU72605.1| ribonuclease PH/Ham1 protein [Enterococcus faecalis HIP11704]
gi|256986057|gb|EEU73359.1| ribonuclease PH/Ham1 protein [Enterococcus faecalis JH1]
gi|256990945|gb|EEU78247.1| ribonuclease PH/Ham1 protein [Enterococcus faecalis E1Sol]
gi|256994507|gb|EEU81809.1| ribonuclease PH/Ham1 protein [Enterococcus faecalis D6]
gi|257157564|gb|EEU87524.1| ribonuclease PH/Ham1 protein [Enterococcus faecalis ARO1/DG]
gi|257164785|gb|EEU94745.1| ribonuclease PH [Enterococcus faecalis X98]
gi|294451939|gb|EFG20389.1| tRNA nucleotidyltransferase [Enterococcus faecalis PC1.1]
gi|300850864|gb|EFK78613.1| tRNA nucleotidyltransferase [Enterococcus faecalis TUSoD Ef11]
gi|306497759|gb|EFM67291.1| ribonuclease PH [Enterococcus faecalis TX0411]
gi|306500480|gb|EFM69813.1| ribonuclease PH [Enterococcus faecalis TX0109]
gi|306504513|gb|EFM73720.1| ribonuclease PH [Enterococcus faecalis TX0860]
gi|306508728|gb|EFM77818.1| ribonuclease PH [Enterococcus faecalis TX2134]
gi|306509498|gb|EFM78546.1| ribonuclease PH [Enterococcus faecalis TX0855]
gi|310630634|gb|EFQ13917.1| ribonuclease PH [Enterococcus faecalis TX0102]
gi|315028079|gb|EFT40011.1| ribonuclease PH [Enterococcus faecalis TX2137]
gi|315030712|gb|EFT42644.1| ribonuclease PH [Enterococcus faecalis TX4000]
gi|315031600|gb|EFT43532.1| ribonuclease PH [Enterococcus faecalis TX0017]
gi|315034958|gb|EFT46890.1| ribonuclease PH [Enterococcus faecalis TX0027]
gi|315148459|gb|EFT92475.1| ribonuclease PH [Enterococcus faecalis TX4244]
gi|315156537|gb|EFU00554.1| ribonuclease PH [Enterococcus faecalis TX0043]
gi|315158363|gb|EFU02380.1| ribonuclease PH [Enterococcus faecalis TX0312]
gi|315165533|gb|EFU09550.1| ribonuclease PH [Enterococcus faecalis TX1302]
gi|315168390|gb|EFU12407.1| ribonuclease PH [Enterococcus faecalis TX1341]
gi|323480361|gb|ADX79800.1| ribonuclease PH [Enterococcus faecalis 62]
gi|329576387|gb|EGG57900.1| tRNA nucleotidyltransferase [Enterococcus faecalis TX1467]
Length = 451
Score = 177 bits (449), Expect = 1e-42, Method: Composition-based stats.
Identities = 119/247 (48%), Positives = 158/247 (63%), Gaps = 7/247 (2%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+R R ++R+I++ V K+ EGS ++ FGDT ++ +AT+EEKVP ++R GW+
Sbjct: 2 IRHDSRAPKELRKITIETNVFKHPEGSVVISFGDTKVICSATVEEKVPPFLRGAGTGWVA 61
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEY MLPR+T R RE+ G+ GR+ EIQR+IGR+LR+VVDL LG R I++DCDVIQ
Sbjct: 62 AEYSMLPRATNTRNIRESAKGKLTGRTMEIQRLIGRSLRAVVDLEKLGERSIVVDCDVIQ 121
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPI-VDLDY 179
ADGGTRTA+ITGA+VAL + +K H+AA+S G+L +DLDY
Sbjct: 122 ADGGTRTASITGAFVALRLAVN--HLLMTGALAEDPIKEHLAAVSVGILPDGYCVLDLDY 179
Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI- 238
EDS VD N VMT+SG VE+QG+ E ATFS D AML K I +LI QK+ +
Sbjct: 180 AEDSNAAVDMNIVMTESGEFVEIQGTGEEATFSGDELNAMLFYGKTGIEELIAYQKEALY 239
Query: 239 ---SNEV 242
S EV
Sbjct: 240 ALASEEV 246
>gi|52424307|ref|YP_087444.1| ribonuclease PH [Mannheimia succiniciproducens MBEL55E]
gi|61215869|sp|Q65W01|RNPH_MANSM RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|52306359|gb|AAU36859.1| Rph protein [Mannheimia succiniciproducens MBEL55E]
Length = 240
Score = 177 bits (449), Expect = 1e-42, Method: Composition-based stats.
Identities = 119/241 (49%), Positives = 164/241 (68%), Gaps = 2/241 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR + R N+ R I +TR +K+AEGS LV+FGDT ++ TAT+E+ VP +++ GW+T
Sbjct: 1 MRPNNRAVNEPRPIKITRHYTKHAEGSVLVEFGDTKVICTATVEDSVPRFLKGQGQGWVT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPRST +R+ REA G+QGGR+ EIQR+I R+LR++VDL+ALG R I +DCDVIQ
Sbjct: 61 AEYGMLPRSTHSRMLREAAKGKQGGRTMEIQRLIARSLRAMVDLTALGERSITLDCDVIQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+ITGA VAL D + + + LKG VAA+S G++ G + DL+Y
Sbjct: 121 ADGGTRTASITGACVALTDAINALVENGTLKTS--PLKGLVAAVSVGIVNGEAVCDLEYV 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
EDS + D N VM + G ++EVQG+AE FS + +LNLAK + Q+ ++
Sbjct: 179 EDSAAETDMNVVMMEDGRMIEVQGTAEGEPFSHEELLTLLNLAKQGCNMIFDAQRRALAA 238
Query: 241 E 241
+
Sbjct: 239 D 239
>gi|84501187|ref|ZP_00999392.1| ribonuclease PH [Oceanicola batsensis HTCC2597]
gi|84390478|gb|EAQ02966.1| ribonuclease PH [Oceanicola batsensis HTCC2597]
Length = 237
Score = 177 bits (449), Expect = 1e-42, Method: Composition-based stats.
Identities = 128/237 (54%), Positives = 173/237 (72%), Gaps = 2/237 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR SGR ++MR +S+ V+K+AEGSCL+K GDTH++ TAT+E++VP +I+ + GW+T
Sbjct: 1 MRPSGRDLSEMRAVSIETGVTKHAEGSCLIKVGDTHVICTATIEDRVPPFIKGSGLGWVT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPRST +R++REA +G+QGGR+ EIQR+IGR+LR+ VD ALG RQI IDCDVIQ
Sbjct: 61 AEYGMLPRSTTSRMRREASAGKQGGRTVEIQRLIGRSLRAGVDRVALGERQISIDCDVIQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTR A+ITG WVAL + + + V VAA+SCG+ G P++DLDY
Sbjct: 121 ADGGTRCASITGGWVALRLAVNKLMKAGDVVTDPLV--DPVAAVSCGIYAGQPVLDLDYP 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
EDS VD NFVMT SG ++EVQ SAE AT+S+D +++LA+ +++L + QK
Sbjct: 179 EDSEAGVDGNFVMTGSGRLIEVQMSAEGATYSRDQMNQLVDLAEKGVSELAEKQKAA 235
>gi|217978304|ref|YP_002362451.1| ribonuclease PH [Methylocella silvestris BL2]
gi|254808594|sp|B8ERN7|RNPH_METSB RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|217503680|gb|ACK51089.1| ribonuclease PH [Methylocella silvestris BL2]
Length = 237
Score = 177 bits (449), Expect = 1e-42, Method: Composition-based stats.
Identities = 133/239 (55%), Positives = 174/239 (72%), Gaps = 2/239 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR S R +++R ++ R V++YAEGSCL+KFG TH+L TA+LE+K P W+R GW++
Sbjct: 1 MRPSQRAADELRPVTFERNVARYAEGSCLIKFGSTHVLCTASLEDKPPAWLRGQGRGWVS 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEY MLPR+T R KRE+ +G+ GR+QEIQR+IGR+LR+V +L LG RQI IDCDV+Q
Sbjct: 61 AEYAMLPRATHTRTKRESTTGKPSGRTQEIQRLIGRSLRAVTNLQGLGERQITIDCDVLQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTAAITGAWVALHDCL+ M S L+ HVAAISCG+ G ++DLDY
Sbjct: 121 ADGGTRTAAITGAWVALHDCLKWMRQRS--IIKDLPLRDHVAAISCGVSNGESVLDLDYA 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
EDS + DANFV+T SG +VEVQ +AE A F++ AML LA+ I L+++QK ++
Sbjct: 179 EDSAAETDANFVITGSGSLVEVQATAEGAVFTETQLTAMLALARGGITTLVEMQKAAVA 237
>gi|296268927|ref|YP_003651559.1| ribonuclease PH [Thermobispora bispora DSM 43833]
gi|296091714|gb|ADG87666.1| ribonuclease PH [Thermobispora bispora DSM 43833]
Length = 247
Score = 177 bits (449), Expect = 1e-42, Method: Composition-based stats.
Identities = 115/242 (47%), Positives = 158/242 (65%), Gaps = 3/242 (1%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEK-VPMWIRNTKHGWIT 60
R GR+ +Q+R +++TR +AEGS LV+FG T +L AT+E VP W + + GW+T
Sbjct: 3 RSDGRRPDQLRPVTITRNWLAHAEGSVLVEFGATKVLCAATVEAGNVPRWRKGSGLGWVT 62
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEY MLPR+TG R +RE+V G+ GGR+ EI R+IGRALR+ VD +G IIIDCDV+Q
Sbjct: 63 AEYAMLPRATGTRSERESVKGKIGGRTHEISRLIGRALRACVDFKVMGENSIIIDCDVLQ 122
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTAAITGA+VAL D + M V V+A+S G++ P++DL Y
Sbjct: 123 ADGGTRTAAITGAFVALADAVAWMRANEVCLGDPLVNS--VSAVSVGIVGSEPLLDLCYE 180
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
ED + D N VMT +G VEVQG+AE A F +D A+L+LA A+L ++Q + +
Sbjct: 181 EDVVAETDMNVVMTGAGAFVEVQGTAEGAPFGRDQLNALLDLATAGCAELARIQAEALGR 240
Query: 241 EV 242
++
Sbjct: 241 DL 242
>gi|148264306|ref|YP_001231012.1| ribonuclease PH [Geobacter uraniireducens Rf4]
gi|189043764|sp|A5G3S1|RNPH_GEOUR RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|146397806|gb|ABQ26439.1| RNAse PH [Geobacter uraniireducens Rf4]
Length = 238
Score = 177 bits (449), Expect = 1e-42, Method: Composition-based stats.
Identities = 119/238 (50%), Positives = 165/238 (69%), Gaps = 2/238 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR GR +RE+ +TR K+AEGS L++FGDT ++ TA++E VP ++R GW+T
Sbjct: 1 MRFDGRGAESLREVKITRNYLKHAEGSVLIEFGDTKVICTASVEGSVPPFLRGKGTGWVT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEY MLPR+T R RE+ G+ GGR+ EIQR+IGR+LR+V+D++ LG R ++IDCDVIQ
Sbjct: 61 AEYSMLPRATHTRSHRESSKGKVGGRTHEIQRLIGRSLRAVMDMNLLGERSVLIDCDVIQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+ITGA+VAL+D L + + LK VAA+S G++ G P++DL+Y
Sbjct: 121 ADGGTRTASITGAYVALYDALDGLVKK--GELAAMPLKEAVAAVSVGIVDGTPLLDLNYV 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
EDS+ +VD NFVMT S VEVQG+AE F+ + AM +LA I L ++QK+ +
Sbjct: 179 EDSSAEVDMNFVMTSSNRFVEVQGTAEAEPFTVEQMDAMRDLAISGIKRLFQIQKEAL 236
>gi|227518377|ref|ZP_03948426.1| tRNA nucleotidyltransferase [Enterococcus faecalis TX0104]
gi|227074055|gb|EEI12018.1| tRNA nucleotidyltransferase [Enterococcus faecalis TX0104]
Length = 451
Score = 177 bits (449), Expect = 1e-42, Method: Composition-based stats.
Identities = 118/247 (47%), Positives = 158/247 (63%), Gaps = 7/247 (2%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+R R ++R+I++ V K+ EGS ++ FGDT ++ +AT+EEKVP ++R GW+
Sbjct: 2 IRHDSRAPKELRKITIETNVFKHPEGSVVISFGDTKVICSATVEEKVPPFLRGGGTGWVA 61
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEY MLPR+T R RE+ G+ GR+ EIQR+IGR+LR+VVDL LG R +++DCDVIQ
Sbjct: 62 AEYSMLPRATNTRNIRESAKGKLTGRTMEIQRLIGRSLRAVVDLEKLGERSVVVDCDVIQ 121
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPI-VDLDY 179
ADGGTRTA+ITGA+VAL + +K H+AA+S G+L +DLDY
Sbjct: 122 ADGGTRTASITGAFVALRLAVN--HLLMTGALAEDPIKEHLAAVSVGILPDGYCVLDLDY 179
Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI- 238
EDS VD N VMT+SG VE+QG+ E ATFS D AML K I +LI QK+ +
Sbjct: 180 AEDSNAAVDMNIVMTESGEFVEIQGTGEEATFSGDELNAMLFYGKTGIEELIAYQKEALY 239
Query: 239 ---SNEV 242
S EV
Sbjct: 240 ALASEEV 246
>gi|254428098|ref|ZP_05041805.1| ribonuclease PH [Alcanivorax sp. DG881]
gi|196194267|gb|EDX89226.1| ribonuclease PH [Alcanivorax sp. DG881]
Length = 238
Score = 177 bits (449), Expect = 1e-42, Method: Composition-based stats.
Identities = 123/239 (51%), Positives = 160/239 (66%), Gaps = 2/239 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR SGR +Q+RE+S TR + +AEGS LV FG T +L TA++EE VP +++ GW+T
Sbjct: 1 MRPSGRAPDQLRELSFTRNYTVHAEGSVLVAFGGTKVLCTASVEEGVPRFLKGKGQGWLT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEY MLPRST R REA G+QGGR+ EIQR+IGR+LR+ VD+ ALG R I +DCDV+Q
Sbjct: 61 AEYSMLPRSTHTRSGREATRGKQGGRTLEIQRLIGRSLRAAVDMKALGERTIYLDCDVLQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+I+GA VAL D K S L G V A+S GM G P++DLDY
Sbjct: 121 ADGGTRTASISGACVALVDAF--THLLETKKIKSDPLTGLVGAVSVGMYEGAPVLDLDYA 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
EDS D N VMT G +E+QGSAE A F+++ ++L LA+ I ++IK Q+ +
Sbjct: 179 EDSNAGTDMNVVMTQQGGFIEIQGSAEGAPFTREQSDSLLGLAEKGIGEIIKAQQVALG 237
>gi|149189226|ref|ZP_01867513.1| ribonuclease PH [Vibrio shilonii AK1]
gi|148836980|gb|EDL53930.1| ribonuclease PH [Vibrio shilonii AK1]
Length = 238
Score = 177 bits (448), Expect = 1e-42, Method: Composition-based stats.
Identities = 119/240 (49%), Positives = 164/240 (68%), Gaps = 2/240 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR + R +Q+R I +TR + YAEGS LV+FG+T +L AT+EE VP W++ GW+T
Sbjct: 1 MRPNDRAADQVRPIKITRNYTAYAEGSVLVEFGNTKVLCNATVEENVPRWLKGQGKGWVT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPRST +R++REA SG+QGGR+ EIQR+I R+LR+VVDL A+G + +DCDVIQ
Sbjct: 61 AEYGMLPRSTHSRMRREASSGKQGGRTMEIQRLIARSLRAVVDLEAMGEIMVTVDCDVIQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+I+GA VA+ D H+ + +KGHVAA+S G+L + DL+Y
Sbjct: 121 ADGGTRTASISGASVAMADAFAHLVAK--GKLKANPMKGHVAAVSVGILGEDILCDLEYT 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
EDS D D N VMT+ G ++E+QG+AE F+ A+L A IA+++ QK + +
Sbjct: 179 EDSAADTDMNVVMTEDGRMIEIQGTAEGEPFTHKELMALLESANKGIAEIVAAQKLALED 238
>gi|260494952|ref|ZP_05815081.1| ribonuclease PH [Fusobacterium sp. 3_1_33]
gi|260197395|gb|EEW94913.1| ribonuclease PH [Fusobacterium sp. 3_1_33]
Length = 434
Score = 177 bits (448), Expect = 1e-42, Method: Composition-based stats.
Identities = 111/241 (46%), Positives = 159/241 (65%), Gaps = 2/241 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+R GR N+ R+I +T+ ++ YAEGS L++ G+T ++ TA++ +KVP ++R T GW+T
Sbjct: 2 LREDGRNFNEERKIKITKNINIYAEGSVLIEVGNTKVICTASVSDKVPSFLRGTGKGWVT 61
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEY MLPR+T R REA G+ GR+ EIQR+IGRALR+ +DL LG R I IDCDVIQ
Sbjct: 62 AEYSMLPRATNERNPREASKGKLAGRTVEIQRLIGRALRASIDLEKLGERLITIDCDVIQ 121
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRT +ITG ++AL ++ + + + VAAIS G + +VDL Y
Sbjct: 122 ADGGTRTTSITGGYIALALAIKKLLKEEILEENPLISN--VAAISVGKVNSELMVDLKYS 179
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
EDS +VD N +M G +EVQG+ E +TF++ +L+LA++ I LIKLQ ++I+
Sbjct: 180 EDSAAEVDMNVIMNKKGEFIEVQGTGEESTFTRAELNQLLDLAENSIKRLIKLQDEIINQ 239
Query: 241 E 241
E
Sbjct: 240 E 240
>gi|188588196|ref|YP_001919836.1| ribonuclease PH [Clostridium botulinum E3 str. Alaska E43]
gi|251780372|ref|ZP_04823292.1| tRNA nucleotidyltransferase [Clostridium botulinum E1 str. 'BoNT E
Beluga']
gi|226736898|sp|B2UZ31|RNPH_CLOBA RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|188498477|gb|ACD51613.1| ribonuclease PH [Clostridium botulinum E3 str. Alaska E43]
gi|243084687|gb|EES50577.1| tRNA nucleotidyltransferase [Clostridium botulinum E1 str. 'BoNT E
Beluga']
Length = 249
Score = 177 bits (448), Expect = 1e-42, Method: Composition-based stats.
Identities = 110/239 (46%), Positives = 155/239 (64%), Gaps = 2/239 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR+ GR+ Q+R + +TR +KYAEGS ++ GDT +L ++E+KVP +++ T GWIT
Sbjct: 1 MRIDGRKNEQIRHVKVTRHYTKYAEGSVYIEVGDTKVLCNVSIEDKVPPFMKGTGSGWIT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEY MLPRST R R+ + GR+ EIQR+IGRALRSVVDL ALG + + IDCDVIQ
Sbjct: 61 AEYNMLPRSTETRKIRDIARLKIDGRTMEIQRLIGRALRSVVDLKALGEKTLWIDCDVIQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRT AI+GA++AL D + + ++ VAA+S G++ I+DL Y
Sbjct: 121 ADGGTRTTAISGAFIALVDAVNKLHKIKPFKI--YPIRSFVAAVSVGIVNEEKILDLCYQ 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
EDS VD N +MTD G VEVQG+ E + +++ +L+L + I +I +QK+ +
Sbjct: 179 EDSKAKVDMNIIMTDEGSFVEVQGTGEESPYTRTELNELLDLGEKGIKQMINVQKESLK 237
>gi|300780583|ref|ZP_07090438.1| tRNA nucleotidyltransferase [Corynebacterium genitalium ATCC 33030]
gi|300533569|gb|EFK54629.1| tRNA nucleotidyltransferase [Corynebacterium genitalium ATCC 33030]
Length = 245
Score = 177 bits (448), Expect = 1e-42, Method: Composition-based stats.
Identities = 107/239 (44%), Positives = 157/239 (65%), Gaps = 2/239 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+R GR ++MR + +TR + GS LV+FG+T ++ TA+ EE VP + +++ GW+T
Sbjct: 8 LRADGRALDEMRPVRITRGFTSNPAGSVLVEFGNTRVMCTASAEEGVPRFKKDSGEGWLT 67
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEY MLP +T +R+ RE++ G+ GR+ EI R++GR+LR+ VDL+ALG I +DCDV+Q
Sbjct: 68 AEYAMLPAATHDRMPRESMKGKVKGRTHEISRLVGRSLRAAVDLTALGENTIQLDCDVLQ 127
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+ITGA+VAL D + ++++ + L VAA+S G++ G +DL Y
Sbjct: 128 ADGGTRTASITGAYVALADAIGYLKE--QGVVPGEPLLAPVAAVSVGIVDGRVCLDLPYE 185
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
EDS +VD N VMTDSG VEVQG+ E F ++ ML+ A+ +LI QK +
Sbjct: 186 EDSRAEVDLNVVMTDSGDFVEVQGTGEHGLFGREQLGLMLDAAEKGCRELIDAQKAALG 244
>gi|145639813|ref|ZP_01795414.1| ribonuclease PH [Haemophilus influenzae PittII]
gi|145271031|gb|EDK10947.1| ribonuclease PH [Haemophilus influenzae PittII]
gi|309750310|gb|ADO80294.1| Ribonuclease PH [Haemophilus influenzae R2866]
Length = 238
Score = 177 bits (448), Expect = 1e-42, Method: Composition-based stats.
Identities = 119/239 (49%), Positives = 166/239 (69%), Gaps = 2/239 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR + R+ NQ R+I +TR +K+AEGS LV+FGDT +L TAT+E+ VP +++ GW+T
Sbjct: 1 MRPNNRENNQPRQIKITRNYTKHAEGSVLVEFGDTKVLCTATVEDAVPRFLKGQGQGWVT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPRST +R++REA G+QGGR+ EIQR+I R+LR++VDL ALG R I +DCDVIQ
Sbjct: 61 AEYGMLPRSTHSRMQREAAKGKQGGRTMEIQRLIARSLRAMVDLKALGERAITLDCDVIQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+ITGA VAL D + + + + +KG V+AIS G++ G + DL+Y
Sbjct: 121 ADGGTRTASITGAAVALCDAINGLIEN--GTLKTNPIKGLVSAISVGIVDGQAVCDLEYV 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
EDS + D N VM + G ++EVQG+AE FS + +L+LAK + Q++ +
Sbjct: 179 EDSAAETDMNVVMMEDGRMIEVQGTAEGEPFSHEELLTLLDLAKQGCNQIFIAQRESLG 237
>gi|222110072|ref|YP_002552336.1| ribonuclease ph [Acidovorax ebreus TPSY]
gi|221729516|gb|ACM32336.1| ribonuclease PH [Acidovorax ebreus TPSY]
Length = 244
Score = 177 bits (448), Expect = 1e-42, Method: Composition-based stats.
Identities = 128/239 (53%), Positives = 165/239 (69%), Gaps = 2/239 (0%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R GR +Q+R I +TR + +AEG+ L++FG+T +L TA++EEKVP R + GW+TA
Sbjct: 8 RSGGRALDQLRPIRITRHYTMHAEGAVLIEFGNTRVLCTASVEEKVPPHKRGSGEGWVTA 67
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
EYGMLPRST R REA G+Q GR+QEIQR+IGR+LR+V DL ALG R I IDCDVIQA
Sbjct: 68 EYGMLPRSTHTRSDREAARGKQSGRTQEIQRLIGRSLRAVFDLKALGERTIQIDCDVIQA 127
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
DGGTRTAAITGAWVA D + + + L G VAA+S G++ G P++DL+Y E
Sbjct: 128 DGGTRTAAITGAWVAAQDAVNTLLAA--GKISASPLTGAVAAVSVGIVQGQPLLDLEYVE 185
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
D D D N VMT +GH VEVQG+AE A FS+ +L LA+ IA+L+ LQ+ + N
Sbjct: 186 DVACDTDMNVVMTGTGHYVEVQGTAEGAAFSRQEMDQLLALAEKGIAELVALQRQSLRN 244
>gi|254515846|ref|ZP_05127906.1| ribonuclease PH [gamma proteobacterium NOR5-3]
gi|219675568|gb|EED31934.1| ribonuclease PH [gamma proteobacterium NOR5-3]
Length = 240
Score = 177 bits (448), Expect = 1e-42, Method: Composition-based stats.
Identities = 124/238 (52%), Positives = 169/238 (71%), Gaps = 2/238 (0%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R SGR +Q+R+IS+ R+ + +AEGS LV FG+T ++ TA++E+ VP ++R GWITA
Sbjct: 3 RPSGRATDQLRDISIERQFTCHAEGSVLVSFGNTRVICTASVEDSVPRFLRGKNSGWITA 62
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
EYGMLPRSTG+R+ REA G+QGGR+QEIQR+IGR+LR+ VDLS LG I +DCDVIQA
Sbjct: 63 EYGMLPRSTGSRMGREAARGKQGGRTQEIQRLIGRSLRAAVDLSKLGEHTITLDCDVIQA 122
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
DGGTRTA+ITGA+VAL D + ++ K + L+ VA++S G+ G ++DLDY E
Sbjct: 123 DGGTRTASITGAFVALVDAINGLQRD--KKISTDPLRHFVASVSVGVYQGEAVLDLDYIE 180
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
DS D D N VM + G +EVQG+AE A FS+ ML+LA I+ LI+ Q+ ++
Sbjct: 181 DSKADTDLNVVMAEHGEFIEVQGTAEAAPFSRTELDQMLDLASGGISTLIECQRQALA 238
>gi|329847441|ref|ZP_08262469.1| ribonuclease PH [Asticcacaulis biprosthecum C19]
gi|328842504|gb|EGF92073.1| ribonuclease PH [Asticcacaulis biprosthecum C19]
Length = 250
Score = 177 bits (448), Expect = 1e-42, Method: Composition-based stats.
Identities = 122/240 (50%), Positives = 166/240 (69%), Gaps = 2/240 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+R S R+ +QMR ++L V++YAEGSCLV FG T +L TA++E VP +++ GW+T
Sbjct: 13 IRPSNRKPDQMRNVTLETGVTRYAEGSCLVTFGHTRVLVTASVETGVPSFLKGKGQGWVT 72
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPRST R +REA +G+Q GR+QEIQR+IGR++R+V+DL ALG RQI +DCDV+Q
Sbjct: 73 AEYGMLPRSTHTRSRREAATGKQSGRTQEIQRLIGRSMRAVIDLKALGERQITLDCDVLQ 132
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+ITGAWVAL + + + + VAAISCG+ P++DLDY
Sbjct: 133 ADGGTRTASITGAWVALAAACDKLVADKIIEKSPLLDQ--VAAISCGIFEAVPVLDLDYD 190
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
EDS + DANFV+T SGH VE+Q + E+ FS+ F + +LA ++L LQ V+
Sbjct: 191 EDSNAETDANFVITGSGHAVEIQATGEKRGFSRQEFDTLYDLALKGTSELFALQNQVLGR 250
>gi|56707964|ref|YP_169860.1| ribonuclease PH [Francisella tularensis subsp. tularensis SCHU S4]
gi|110670435|ref|YP_666992.1| ribonuclease PH [Francisella tularensis subsp. tularensis FSC198]
gi|134302244|ref|YP_001122213.1| ribonuclease PH [Francisella tularensis subsp. tularensis
WY96-3418]
gi|208780450|ref|ZP_03247790.1| ribonuclease PH [Francisella novicida FTG]
gi|224457045|ref|ZP_03665518.1| ribonuclease PH [Francisella tularensis subsp. tularensis
MA00-2987]
gi|254370452|ref|ZP_04986457.1| ribonuclease PH [Francisella tularensis subsp. tularensis FSC033]
gi|254372353|ref|ZP_04987844.1| tRNA nucleotidyltransferase [Francisella tularensis subsp. novicida
GA99-3549]
gi|254874766|ref|ZP_05247476.1| ribonuclease PH [Francisella tularensis subsp. tularensis
MA00-2987]
gi|61215787|sp|Q5NGI2|RNPH_FRATT RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|123169418|sp|Q14HY4|RNPH_FRAT1 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|166228282|sp|A4IYU1|RNPH_FRATW RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|54112559|gb|AAV28913.1| NT02FT0689 [synthetic construct]
gi|56604456|emb|CAG45491.1| Ribonuclease PH [Francisella tularensis subsp. tularensis SCHU S4]
gi|110320768|emb|CAL08874.1| Ribonuclease PH [Francisella tularensis subsp. tularensis FSC198]
gi|134050021|gb|ABO47092.1| ribonuclease PH [Francisella tularensis subsp. tularensis
WY96-3418]
gi|151568695|gb|EDN34349.1| ribonuclease PH [Francisella tularensis subsp. tularensis FSC033]
gi|151570082|gb|EDN35736.1| tRNA nucleotidyltransferase [Francisella novicida GA99-3549]
gi|208743596|gb|EDZ89900.1| ribonuclease PH [Francisella novicida FTG]
gi|254840765|gb|EET19201.1| ribonuclease PH [Francisella tularensis subsp. tularensis
MA00-2987]
gi|282159150|gb|ADA78541.1| ribonuclease PH [Francisella tularensis subsp. tularensis NE061598]
Length = 235
Score = 177 bits (448), Expect = 1e-42, Method: Composition-based stats.
Identities = 116/232 (50%), Positives = 162/232 (69%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR SGR +Q+R + +T +K+AEGS L++FGDT ++ TA++ VP + +++ GW+T
Sbjct: 1 MRPSGRNNDQLRNLKVTHNFTKHAEGSVLIEFGDTKVICTASVVAGVPKFKKDSGEGWLT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPRST R+ REA G+Q GR+QEIQR+IGRALR+ VDL+A+G I +DCDVIQ
Sbjct: 61 AEYGMLPRSTHTRMDREAARGKQSGRTQEIQRLIGRALRASVDLTAIGENTIKVDCDVIQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+ITGA +A+ D +++M+ + + L VAAIS G+ P++DLDY
Sbjct: 121 ADGGTRTASITGASLAIADAIEYMKQNGMLDEQANPLLSQVAAISVGIYNNEPVLDLDYD 180
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
EDS + D N VM +G I+E+QG+AE FS++ F ML LAK I ++
Sbjct: 181 EDSNAETDMNVVMNSNGGIIEIQGTAEGKDFSEEEFAKMLGLAKKGIKEIFA 232
>gi|253995547|ref|YP_003047611.1| ribonuclease PH [Methylotenera mobilis JLW8]
gi|253982226|gb|ACT47084.1| ribonuclease PH [Methylotenera mobilis JLW8]
Length = 241
Score = 177 bits (448), Expect = 1e-42, Method: Composition-based stats.
Identities = 131/239 (54%), Positives = 167/239 (69%), Gaps = 2/239 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+R S R NQ+RE+ + R +K+AEGS LVKFGDTH+L TA+++EKVP +++ GW+T
Sbjct: 5 IRPSQRACNQLREVEIIRHYTKHAEGSVLVKFGDTHVLCTASVDEKVPGFLKGKGQGWVT 64
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPRSTG+R+ REA G+Q GR+QEIQR+IGR+LR+++DL LG R I IDCDVIQ
Sbjct: 65 AEYGMLPRSTGSRMDREAARGKQSGRTQEIQRLIGRSLRAIIDLEKLGERSIQIDCDVIQ 124
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+ITGA+VALHD + + LK VAAIS G+ G P++DLDY
Sbjct: 125 ADGGTRTASITGAYVALHDAISFLLKS--GKISESPLKDSVAAISVGVYQGTPVLDLDYI 182
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
EDS D D N VMT G VE+QG+AE F++D AML+LA I LI Q +
Sbjct: 183 EDSDCDTDMNVVMTGKGGFVEIQGTAEGEPFARDAMNAMLDLAAHGIQQLIIEQNKALG 241
>gi|319795588|ref|YP_004157228.1| ribonuclease ph [Variovorax paradoxus EPS]
gi|315598051|gb|ADU39117.1| ribonuclease PH [Variovorax paradoxus EPS]
Length = 243
Score = 177 bits (448), Expect = 1e-42, Method: Composition-based stats.
Identities = 121/237 (51%), Positives = 166/237 (70%), Gaps = 2/237 (0%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R GR +Q+R + +TR + +AEGS L++FG T +L TA++EE+VP + + GW+TA
Sbjct: 6 RSGGRAADQLRPVRITRGFTIHAEGSVLIEFGQTRVLCTASVEERVPPHKKGSGEGWVTA 65
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
EYGMLPR+T R REA G+Q GR+QEIQR+IGR++R+V DL+ALG R I +DCDV+QA
Sbjct: 66 EYGMLPRATHTRSSREAAKGKQTGRTQEIQRLIGRSMRAVFDLAALGERTIHLDCDVLQA 125
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
DGGTRTAAITGA+VA D + + +KGHVAAIS G++ G P++DL+Y E
Sbjct: 126 DGGTRTAAITGAFVAAQDAVNKLLAAGTLKAS--PIKGHVAAISVGIVGGTPLLDLEYTE 183
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
DS+ D D N VMT +GH VEVQG+AE F+++ +L LA+ I +L+ LQK +
Sbjct: 184 DSSCDTDMNVVMTGAGHFVEVQGTAEGVAFTREEMNLLLGLAEKGIGELVTLQKQAL 240
>gi|315153645|gb|EFT97661.1| ribonuclease PH [Enterococcus faecalis TX0031]
Length = 451
Score = 177 bits (448), Expect = 1e-42, Method: Composition-based stats.
Identities = 119/247 (48%), Positives = 158/247 (63%), Gaps = 7/247 (2%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+R R ++R+I++ V K+ EGS ++ FGDT ++ +AT+EEKVP ++R GW+
Sbjct: 2 IRHDSRAPKELRKITIETNVFKHPEGSVVISFGDTKVICSATVEEKVPPFLRGAGTGWVA 61
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEY MLPR+T R RE+ G+ GR+ EIQR+IGR+LR+VVDL LG R I++DCDVIQ
Sbjct: 62 AEYSMLPRATNTRNIRESAKGKLTGRTMEIQRLIGRSLRAVVDLEKLGERSIVVDCDVIQ 121
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPI-VDLDY 179
ADGGTRTA+ITGA+VAL + +K H+AA+S G+L +DLDY
Sbjct: 122 ADGGTRTASITGAFVALRLAVN--HLLITGALAEDPIKEHLAAVSVGILPDGYCVLDLDY 179
Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI- 238
EDS VD N VMT+SG VE+QG+ E ATFS D AML K I +LI QK+ +
Sbjct: 180 AEDSNAAVDMNIVMTESGEFVEIQGTGEEATFSGDELNAMLFYGKTGIEELIAYQKEALY 239
Query: 239 ---SNEV 242
S EV
Sbjct: 240 ALASEEV 246
>gi|289427808|ref|ZP_06429517.1| tRNA nucleotidyltransferase [Propionibacterium acnes J165]
gi|295131196|ref|YP_003581859.1| tRNA nucleotidyltransferase [Propionibacterium acnes SK137]
gi|289158990|gb|EFD07185.1| tRNA nucleotidyltransferase [Propionibacterium acnes J165]
gi|291375935|gb|ADD99789.1| tRNA nucleotidyltransferase [Propionibacterium acnes SK137]
gi|313773261|gb|EFS39227.1| ribonuclease PH [Propionibacterium acnes HL074PA1]
gi|313793456|gb|EFS41507.1| ribonuclease PH [Propionibacterium acnes HL110PA1]
gi|313801145|gb|EFS42408.1| ribonuclease PH [Propionibacterium acnes HL110PA2]
gi|313808494|gb|EFS46959.1| ribonuclease PH [Propionibacterium acnes HL087PA2]
gi|313812067|gb|EFS49781.1| ribonuclease PH [Propionibacterium acnes HL083PA1]
gi|313812337|gb|EFS50051.1| ribonuclease PH [Propionibacterium acnes HL025PA1]
gi|313819229|gb|EFS56943.1| ribonuclease PH [Propionibacterium acnes HL046PA2]
gi|313821099|gb|EFS58813.1| ribonuclease PH [Propionibacterium acnes HL036PA1]
gi|313823475|gb|EFS61189.1| ribonuclease PH [Propionibacterium acnes HL036PA2]
gi|313827022|gb|EFS64736.1| ribonuclease PH [Propionibacterium acnes HL063PA1]
gi|313829864|gb|EFS67578.1| ribonuclease PH [Propionibacterium acnes HL007PA1]
gi|313834706|gb|EFS72420.1| ribonuclease PH [Propionibacterium acnes HL056PA1]
gi|313837925|gb|EFS75639.1| ribonuclease PH [Propionibacterium acnes HL086PA1]
gi|314925916|gb|EFS89747.1| ribonuclease PH [Propionibacterium acnes HL036PA3]
gi|314960891|gb|EFT04992.1| ribonuclease PH [Propionibacterium acnes HL002PA2]
gi|314963345|gb|EFT07445.1| ribonuclease PH [Propionibacterium acnes HL082PA1]
gi|314974022|gb|EFT18118.1| ribonuclease PH [Propionibacterium acnes HL053PA1]
gi|314975448|gb|EFT19543.1| ribonuclease PH [Propionibacterium acnes HL045PA1]
gi|314979453|gb|EFT23547.1| ribonuclease PH [Propionibacterium acnes HL072PA2]
gi|314984208|gb|EFT28300.1| ribonuclease PH [Propionibacterium acnes HL005PA1]
gi|314988437|gb|EFT32528.1| ribonuclease PH [Propionibacterium acnes HL005PA2]
gi|314988644|gb|EFT32735.1| ribonuclease PH [Propionibacterium acnes HL005PA3]
gi|315083401|gb|EFT55377.1| ribonuclease PH [Propionibacterium acnes HL027PA2]
gi|315086804|gb|EFT58780.1| ribonuclease PH [Propionibacterium acnes HL002PA3]
gi|315089451|gb|EFT61427.1| ribonuclease PH [Propionibacterium acnes HL072PA1]
gi|315097778|gb|EFT69754.1| ribonuclease PH [Propionibacterium acnes HL038PA1]
gi|327325397|gb|EGE67202.1| tRNA nucleotidyltransferase [Propionibacterium acnes HL096PA2]
gi|327328264|gb|EGE70028.1| tRNA nucleotidyltransferase [Propionibacterium acnes HL096PA3]
gi|327443690|gb|EGE90344.1| ribonuclease PH [Propionibacterium acnes HL043PA1]
gi|327449227|gb|EGE95881.1| ribonuclease PH [Propionibacterium acnes HL043PA2]
gi|327450179|gb|EGE96833.1| ribonuclease PH [Propionibacterium acnes HL013PA2]
gi|327451243|gb|EGE97897.1| ribonuclease PH [Propionibacterium acnes HL092PA1]
gi|328756765|gb|EGF70381.1| ribonuclease PH [Propionibacterium acnes HL020PA1]
gi|328761039|gb|EGF74591.1| tRNA nucleotidyltransferase [Propionibacterium acnes HL099PA1]
gi|332676073|gb|AEE72889.1| ribonuclease PH [Propionibacterium acnes 266]
Length = 254
Score = 177 bits (448), Expect = 1e-42, Method: Composition-based stats.
Identities = 110/238 (46%), Positives = 155/238 (65%), Gaps = 2/238 (0%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R+ GR+ +Q+R++ + R AEGS LV FG T +L A++ E VP W + + GW+TA
Sbjct: 16 RIDGRRLDQLRDVRIERGWLSQAEGSVLVSFGRTTVLCNASVTEGVPRWRKGSGLGWVTA 75
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
EY MLPR+T R RE+ G+ GGR+ EI R++GR+LR+VVD ALG II+DCDV+QA
Sbjct: 76 EYEMLPRATNERSGRESRKGKVGGRTHEISRLVGRSLRAVVDDKALGENTIILDCDVLQA 135
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
DGGTRTA+ITGA+VAL D + + +S+ + G V AIS G++ G P++DL Y E
Sbjct: 136 DGGTRTASITGAYVALVDAVNWLR--GRGGLVSEPITGSVQAISVGVVDGIPMLDLAYEE 193
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
DS D D N VM+ SG VE+QG+AE F+++ +L+LA A L + Q + +
Sbjct: 194 DSRADTDMNVVMSGSGDFVEIQGTAEGTPFNRNLLNELLDLAAGGCATLKQAQSEALG 251
>gi|253997760|ref|YP_003049823.1| ribonuclease PH [Methylovorus sp. SIP3-4]
gi|253984439|gb|ACT49296.1| ribonuclease PH [Methylovorus sp. SIP3-4]
Length = 238
Score = 177 bits (448), Expect = 1e-42, Method: Composition-based stats.
Identities = 129/239 (53%), Positives = 166/239 (69%), Gaps = 2/239 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR S R+ +Q+R I + R +K+AEGS LVKFGDTH+L TA+++EKVP ++R GW+T
Sbjct: 1 MRPSQRETHQLRPIEIIRHYTKHAEGSVLVKFGDTHVLCTASVDEKVPGFLRGKNQGWVT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPRSTG+R+ REA G+Q GR+QEIQR+IGR+LR+++DL LG R I IDCDVIQ
Sbjct: 61 AEYGMLPRSTGSRMDREAARGKQSGRTQEIQRLIGRSLRAIIDLEKLGERSIQIDCDVIQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+ITGA+VALHD + + L+ VAA+S G+ G P++DLDY
Sbjct: 121 ADGGTRTASITGAYVALHDAISRLLA--QGLISESPLRDSVAAVSVGVYQGTPVLDLDYI 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
EDS D D N VMT SG VE+QG+AE F + ML+LA I +L LQ +
Sbjct: 179 EDSDCDTDMNVVMTGSGGYVEIQGTAEGVPFQRADMDRMLDLAAAGIRELTSLQAKALG 237
>gi|254373825|ref|ZP_04989308.1| tRNA nucleotidyltransferase [Francisella novicida GA99-3548]
gi|151571546|gb|EDN37200.1| tRNA nucleotidyltransferase [Francisella novicida GA99-3548]
Length = 235
Score = 177 bits (448), Expect = 1e-42, Method: Composition-based stats.
Identities = 116/232 (50%), Positives = 161/232 (69%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR SGR +Q+R + +T +K+AEGS L++FGDT ++ TA++ VP + +++ GW+T
Sbjct: 1 MRPSGRNNDQLRNLKVTHNFTKHAEGSVLIEFGDTKVICTASVVSGVPKFKKDSGEGWLT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPRST R+ REA G+Q GR+QEIQR+IGRALR+ VDL+A+G I +DCDVIQ
Sbjct: 61 AEYGMLPRSTHTRMDREAARGKQSGRTQEIQRLIGRALRASVDLTAIGENTIKVDCDVIQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+ITGA +A+ D +++M+ + + L VAAIS G+ P++DLDY
Sbjct: 121 ADGGTRTASITGASLAIADAIEYMKQNGMLDEQANPLLSQVAAISVGIYNNEPVLDLDYD 180
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
EDS + D N VM G I+E+QG+AE FS++ F ML LAK I ++
Sbjct: 181 EDSNAETDMNVVMNSKGGIIEIQGTAEGKDFSEEEFAKMLGLAKKGIKEIFA 232
>gi|225848159|ref|YP_002728322.1| ribonuclease PH [Sulfurihydrogenibium azorense Az-Fu1]
gi|225644653|gb|ACN99703.1| ribonuclease PH [Sulfurihydrogenibium azorense Az-Fu1]
Length = 257
Score = 177 bits (448), Expect = 1e-42, Method: Composition-based stats.
Identities = 114/239 (47%), Positives = 154/239 (64%), Gaps = 2/239 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR R+ Q+R I +TR + YAEGS L++FG+T ++ TA++E+KVP +++ + GWIT
Sbjct: 1 MRPDNRKPAQLRPIKITRDFNIYAEGSVLIEFGNTKVIVTASIEDKVPPFLKGSGQGWIT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEY M+PR++ R RE V G GR+ EIQR+IGR+LR+ VDL LG R I IDCDVIQ
Sbjct: 61 AEYSMIPRASETRSLREVVRGSPSGRTHEIQRLIGRSLRAAVDLKKLGERTIWIDCDVIQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTR A+ITGA++A+ D L +E + S LK +VAAIS G + ++DL+Y
Sbjct: 121 ADGGTRVASITGAFIAVADALIKLEKNN--LVKSNPLKDYVAAISVGKVNNEIVLDLNYQ 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
EDS VD N VMT G VE+ + E TF+ M+ K I LIK+QK+ I
Sbjct: 179 EDSKAQVDMNIVMTGKGEFVELGATGEENTFTYQELQKMIEYGKSGIERLIKIQKEFIE 237
>gi|206900914|ref|YP_002251052.1| ribonuclease PH [Dictyoglomus thermophilum H-6-12]
gi|226736903|sp|B5YEU4|RNPH_DICT6 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|206740017|gb|ACI19075.1| ribonuclease PH [Dictyoglomus thermophilum H-6-12]
Length = 240
Score = 177 bits (448), Expect = 1e-42, Method: Composition-based stats.
Identities = 116/239 (48%), Positives = 159/239 (66%), Gaps = 2/239 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+R+ R +R + +TR+ KY GS L++ G+T ++ T ++EEKVP +++ T GW+T
Sbjct: 2 IRIDKRSNVDLRPVKITRKYLKYPLGSVLIEMGETKVICTVSMEEKVPPFLKGTNQGWLT 61
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLP ST R R+ V G GRSQEIQR+IGR+LR+V+D S LG R I ID DVIQ
Sbjct: 62 AEYGMLPGSTPERKVRDVVKGVINGRSQEIQRLIGRSLRAVIDFSKLGERTIWIDTDVIQ 121
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTAAITGA+VAL+D L+ ++ +K VAA+S G++ G ++DL
Sbjct: 122 ADGGTRTAAITGAFVALYDALEKLKRD--GVIKEIPIKEFVAAVSVGIVDGEILLDLSAN 179
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
ED +VD N VMT+SG VE+QG+AE+ F+ + MLNLAK I LI++QK +
Sbjct: 180 EDMRAEVDMNVVMTESGKFVEIQGTAEKTPFTYEQLQQMLNLAKQGIMKLIEIQKKALG 238
>gi|83648974|ref|YP_437409.1| ribonuclease PH [Hahella chejuensis KCTC 2396]
gi|123530517|sp|Q2S8P0|RNPH_HAHCH RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|83637017|gb|ABC32984.1| ribonuclease PH [Hahella chejuensis KCTC 2396]
Length = 238
Score = 177 bits (448), Expect = 1e-42, Method: Composition-based stats.
Identities = 124/240 (51%), Positives = 162/240 (67%), Gaps = 2/240 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR SGRQ +Q R+I +T+ +K+AEGS LV+FGDT ++ TAT+E VP ++R GW+T
Sbjct: 1 MRPSGRQPDQTRDIKITKNYTKHAEGSVLVEFGDTKVICTATVENGVPRFLRGEDQGWVT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPR+TG R +REA G+QGGR+ EIQR+IGR+LR+ VDL + I IDCDVIQ
Sbjct: 61 AEYGMLPRATGTRNQREAARGKQGGRTLEIQRLIGRSLRAAVDLKKMPDISITIDCDVIQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+ITG +VA+ D + + + + VAAIS G+ G P+VDLDY
Sbjct: 121 ADGGTRTASITGGFVAMADAINSLLAK--GQLKNNPILHKVAAISVGVYEGVPVVDLDYD 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
EDS + D N VMTD +EVQG+AE A FS AML+LA I L Q++V+ +
Sbjct: 179 EDSKAETDMNVVMTDQDGFIEVQGTAEAAPFSSAELTAMLDLAGKGIRQLFVAQEEVLQS 238
>gi|145589263|ref|YP_001155860.1| ribonuclease PH [Polynucleobacter necessarius subsp. asymbioticus
QLW-P1DMWA-1]
gi|145047669|gb|ABP34296.1| RNAse PH [Polynucleobacter necessarius subsp. asymbioticus
QLW-P1DMWA-1]
Length = 246
Score = 177 bits (448), Expect = 1e-42, Method: Composition-based stats.
Identities = 121/238 (50%), Positives = 162/238 (68%), Gaps = 2/238 (0%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R SGR+ +R ++++R +K+AEGS L+ FGDT +L TA++ +KVP R + GW+TA
Sbjct: 11 RPSGRKPKDLRPVTISRAFTKHAEGSVLIAFGDTKVLCTASILDKVPPHKRGSGEGWVTA 70
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
EYGMLPRST R REA G+Q GR+QEIQR+IGRA+RSV +L LG R I +DCDV+QA
Sbjct: 71 EYGMLPRSTHTRSDREAARGKQSGRTQEIQRLIGRAMRSVFNLKTLGERTIHLDCDVLQA 130
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
DGGTRTA+ITGA+VA D + + + VAAIS G+ G P++DLDY E
Sbjct: 131 DGGTRTASITGAYVAARDAVNQLLKS--GALTQDPIIDSVAAISVGIYQGAPVLDLDYPE 188
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
DS+ D D N VMT G ++EVQG+AE A FS+ A+L+LA+ I +L +LQ D +
Sbjct: 189 DSSCDTDMNVVMTGKGGMIEVQGTAEGAAFSRAELNALLDLAEQGIQELTQLQIDSLK 246
>gi|256026996|ref|ZP_05440830.1| ribonuclease PH [Fusobacterium sp. D11]
gi|289764980|ref|ZP_06524358.1| ribonuclease ph [Fusobacterium sp. D11]
gi|289716535|gb|EFD80547.1| ribonuclease ph [Fusobacterium sp. D11]
Length = 428
Score = 177 bits (448), Expect = 1e-42, Method: Composition-based stats.
Identities = 110/241 (45%), Positives = 158/241 (65%), Gaps = 2/241 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+R GR N+ R+I +T+ ++ YAEGS L++ G+T ++ TA++ +KVP ++R T GW+T
Sbjct: 2 VREDGRNFNEERKIKITKNINIYAEGSVLIEVGNTKVICTASVTDKVPSFLRGTGKGWVT 61
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEY MLPR+T R REA G+ GR+ EIQR+IGRALR+ +DL LG R I IDCDVIQ
Sbjct: 62 AEYSMLPRATNERNPREASKGKLAGRTVEIQRLIGRALRASIDLEKLGERLITIDCDVIQ 121
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRT +ITG ++AL ++ + + + VAAIS G + +VDL Y
Sbjct: 122 ADGGTRTTSITGGYIALALAIKKLLKEEILEENPLISN--VAAISVGKVNSELMVDLKYS 179
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
ED +VD N +M G +EVQG+ E +TF++ +L+LA++ I LIKLQ ++I+
Sbjct: 180 EDFAAEVDMNVIMNKKGEFIEVQGTGEESTFTRAELNQLLDLAENSIKRLIKLQDEIINQ 239
Query: 241 E 241
E
Sbjct: 240 E 240
>gi|237743440|ref|ZP_04573921.1| ribonuclease ph [Fusobacterium sp. 7_1]
gi|229433219|gb|EEO43431.1| ribonuclease ph [Fusobacterium sp. 7_1]
Length = 434
Score = 177 bits (448), Expect = 1e-42, Method: Composition-based stats.
Identities = 110/241 (45%), Positives = 158/241 (65%), Gaps = 2/241 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+R GR N+ R+I +T+ ++ YAEGS L++ G+T ++ TA++ +KVP ++R T GW+T
Sbjct: 2 VREDGRNFNEERKIKITKNINIYAEGSVLIEVGNTKVICTASVTDKVPSFLRGTGKGWVT 61
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEY MLPR+T R REA G+ GR+ EIQR+IGRALR+ +DL LG R I IDCDVIQ
Sbjct: 62 AEYSMLPRATNERNPREASKGKLAGRTVEIQRLIGRALRASIDLEKLGERLITIDCDVIQ 121
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRT +ITG ++AL ++ + + + VAAIS G + +VDL Y
Sbjct: 122 ADGGTRTTSITGGYIALALAIKKLLKEEILEENPLISN--VAAISVGKVNSELMVDLKYS 179
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
ED +VD N +M G +EVQG+ E +TF++ +L+LA++ I LIKLQ ++I+
Sbjct: 180 EDFAAEVDMNVIMNKKGEFIEVQGTGEESTFTRAELNQLLDLAENSIKRLIKLQDEIINQ 239
Query: 241 E 241
E
Sbjct: 240 E 240
>gi|89255778|ref|YP_513140.1| ribonuclease PH [Francisella tularensis subsp. holarctica LVS]
gi|115314270|ref|YP_762993.1| tRNA nucleotidyltransferase [Francisella tularensis subsp.
holarctica OSU18]
gi|156501746|ref|YP_001427811.1| ribonuclease PH [Francisella tularensis subsp. holarctica
FTNF002-00]
gi|167009694|ref|ZP_02274625.1| ribonuclease PH [Francisella tularensis subsp. holarctica FSC200]
gi|254367139|ref|ZP_04983171.1| ribonuclease PH [Francisella tularensis subsp. holarctica 257]
gi|290954430|ref|ZP_06559051.1| ribonuclease PH [Francisella tularensis subsp. holarctica URFT1]
gi|295312131|ref|ZP_06802940.1| ribonuclease PH [Francisella tularensis subsp. holarctica URFT1]
gi|122325696|sp|Q0BNH8|RNPH_FRATO RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|122501188|sp|Q2A562|RNPH_FRATH RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|166228280|sp|A7NA52|RNPH_FRATF RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|89143609|emb|CAJ78797.1| Ribonuclease PH [Francisella tularensis subsp. holarctica LVS]
gi|115129169|gb|ABI82356.1| tRNA nucleotidyltransferase [Francisella tularensis subsp.
holarctica OSU18]
gi|134252961|gb|EBA52055.1| ribonuclease PH [Francisella tularensis subsp. holarctica 257]
gi|156252349|gb|ABU60855.1| ribonuclease PH [Francisella tularensis subsp. holarctica
FTNF002-00]
Length = 235
Score = 176 bits (447), Expect = 2e-42, Method: Composition-based stats.
Identities = 116/232 (50%), Positives = 162/232 (69%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR SGR +Q+R + +T +K+AEGS L++FGDT ++ TA++ VP + +++ GW+T
Sbjct: 1 MRPSGRNNDQLRNLKVTHNFTKHAEGSVLIEFGDTKVICTASVVAGVPKFKKDSGEGWLT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPRST R+ REA G+Q GR+QEIQR+IGRALR+ VDL+A+G I +DCDVIQ
Sbjct: 61 AEYGMLPRSTHTRMDREAARGKQSGRTQEIQRLIGRALRASVDLTAIGENTIKVDCDVIQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+ITGA +A+ D +++M+ + + L VAAIS G+ P++DLDY
Sbjct: 121 ADGGTRTASITGASLAIADAIEYMKQNGILDEQANPLLSQVAAISVGIYNNEPVLDLDYD 180
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
EDS + D N VM +G I+E+QG+AE FS++ F ML LAK I ++
Sbjct: 181 EDSNAETDMNVVMNSNGGIIEIQGTAEGKDFSEEEFAKMLGLAKKGIKEIFA 232
>gi|284029809|ref|YP_003379740.1| ribonuclease PH [Kribbella flavida DSM 17836]
gi|283809102|gb|ADB30941.1| ribonuclease PH [Kribbella flavida DSM 17836]
Length = 238
Score = 176 bits (447), Expect = 2e-42, Method: Composition-based stats.
Identities = 113/238 (47%), Positives = 159/238 (66%), Gaps = 2/238 (0%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R+ GR +Q+R ++LTR+ +AEGS LV+FG T +L A++ E VP W + + GW++A
Sbjct: 3 RIDGRTPDQLRPVTLTRKWLDHAEGSVLVEFGRTRVLCAASVTEGVPRWRKGSGLGWVSA 62
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
EY MLPRST R RE+V GR GGR+ EI R+IGR+LR+V+D ALG I++DCDV+QA
Sbjct: 63 EYAMLPRSTNTRSDRESVKGRIGGRTHEISRLIGRSLRAVIDYKALGENTILLDCDVLQA 122
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
DGGTRTAAITGA+VAL D + + D K + L G V+A+S G++ G P++DL Y E
Sbjct: 123 DGGTRTAAITGAYVALADAVSFLRDR--KALKGEPLTGSVSAVSVGIIDGTPMLDLCYEE 180
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
D + D N V+T G +EVQG+AE A F + ++L L +L KLQ++ ++
Sbjct: 181 DVRAETDMNLVLTGDGKFIEVQGTAEGAPFDRAELDSLLELGTAGCVELTKLQREALA 238
>gi|311106536|ref|YP_003979389.1| ribonuclease PH [Achromobacter xylosoxidans A8]
gi|310761225|gb|ADP16674.1| ribonuclease PH [Achromobacter xylosoxidans A8]
Length = 244
Score = 176 bits (447), Expect = 2e-42, Method: Composition-based stats.
Identities = 117/237 (49%), Positives = 160/237 (67%), Gaps = 2/237 (0%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R SGR +++R SL R ++YAEGS LVK G+TH+L TA++ EKVP +++ GW+TA
Sbjct: 9 RPSGRAVDELRPFSLERGFTRYAEGSVLVKAGNTHVLCTASVLEKVPPFLKGKGEGWVTA 68
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
EYGMLPR+T R REA G+Q GR+QEIQR+IGR+LR+V D+ ALG R + +DCDV+QA
Sbjct: 69 EYGMLPRATHTRGDREAARGKQSGRTQEIQRLIGRSLRAVFDMKALGERTLHLDCDVLQA 128
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
DGGTR A+ITGAWVA + + + ++ VAA+S G++ G ++DLDY E
Sbjct: 129 DGGTRCASITGAWVAASEAIALLMKR--GDLAVNPIRDAVAAVSVGLVQGRAVLDLDYEE 186
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
DS D D N +MT G VEVQG+ E ATF++ ML LA+ IA L++ Q+ +
Sbjct: 187 DSACDADVNVIMTGGGAFVEVQGTGEGATFTRAELDTMLVLAEGGIAGLVREQRAAL 243
>gi|118496994|ref|YP_898044.1| ribonuclease PH [Francisella tularensis subsp. novicida U112]
gi|194324228|ref|ZP_03058002.1| ribonuclease PH [Francisella tularensis subsp. novicida FTE]
gi|166228281|sp|A0Q4X5|RNPH_FRATN RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|118422900|gb|ABK89290.1| ribonuclease PH [Francisella novicida U112]
gi|194321675|gb|EDX19159.1| ribonuclease PH [Francisella tularensis subsp. novicida FTE]
Length = 235
Score = 176 bits (447), Expect = 2e-42, Method: Composition-based stats.
Identities = 116/232 (50%), Positives = 162/232 (69%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR SGR +Q+R + +T +K+AEGS L++FGDT ++ TA++ VP + +++ GW+T
Sbjct: 1 MRPSGRNNDQLRNLKVTHNFTKHAEGSVLIEFGDTKVICTASVVAGVPEFKKDSGEGWLT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPRST R+ REA G+Q GR+QEIQR+IGRALR+ VDL+A+G I +DCDVIQ
Sbjct: 61 AEYGMLPRSTHTRMDREAARGKQSGRTQEIQRLIGRALRASVDLTAIGENTIKVDCDVIQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+ITGA +A+ D +++M+ + + L VAAIS G+ P++DLDY
Sbjct: 121 ADGGTRTASITGASLAIADAIEYMKQNGMLDEQANPLLSQVAAISVGIYNNEPVLDLDYD 180
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
EDS + D N VM +G I+E+QG+AE FS++ F ML LAK I ++
Sbjct: 181 EDSNAETDMNVVMNSNGGIIEIQGTAEGKDFSEEEFAKMLGLAKKGIKEIFA 232
>gi|328676457|gb|AEB27327.1| Ribonuclease PH [Francisella cf. novicida Fx1]
Length = 235
Score = 176 bits (447), Expect = 2e-42, Method: Composition-based stats.
Identities = 116/232 (50%), Positives = 161/232 (69%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR SGR +Q+R + +T +K+AEGS L++FGDT ++ TA++ VP + +++ GW+T
Sbjct: 1 MRPSGRNNDQLRNLKVTHNFTKHAEGSVLIEFGDTKVICTASVVAGVPKFKKDSGEGWLT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPRST R+ REA G+Q GR+QEIQR+IGRALR+ VDL+A+G I +DCDVIQ
Sbjct: 61 AEYGMLPRSTHTRMDREAARGKQSGRTQEIQRLIGRALRASVDLTAIGENTIKVDCDVIQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+ITGA +A+ D +++M+ + + L VAAIS G+ P++DLDY
Sbjct: 121 ADGGTRTASITGASLAIADAIEYMKQNGMLDEQANPLLSQVAAISVGIYNNEPVLDLDYD 180
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
EDS + D N VM G I+E+QG+AE FS++ F ML LAK I ++
Sbjct: 181 EDSNAETDMNVVMNSKGGIIEIQGTAEGKDFSEEEFAKMLGLAKKGIKEIFA 232
>gi|313835876|gb|EFS73590.1| ribonuclease PH [Propionibacterium acnes HL037PA2]
gi|314927124|gb|EFS90955.1| ribonuclease PH [Propionibacterium acnes HL044PA1]
gi|314970767|gb|EFT14865.1| ribonuclease PH [Propionibacterium acnes HL037PA3]
gi|328906032|gb|EGG25807.1| tRNA nucleotidyltransferase [Propionibacterium sp. P08]
Length = 252
Score = 176 bits (447), Expect = 2e-42, Method: Composition-based stats.
Identities = 110/238 (46%), Positives = 155/238 (65%), Gaps = 2/238 (0%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R+ GR+ +Q+R++ + R AEGS LV FG T +L A++ E VP W + + GW+TA
Sbjct: 14 RIDGRRLDQLRDVRIERGWLSQAEGSVLVSFGRTTVLCNASVTEGVPRWRKGSGLGWVTA 73
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
EY MLPR+T R RE+ G+ GGR+ EI R++GR+LR+V+D ALG II+DCDV+QA
Sbjct: 74 EYEMLPRATNERSGRESRRGKIGGRTHEISRLVGRSLRAVIDDKALGENTIILDCDVLQA 133
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
DGGTRTA+ITGA+VAL D + + + + + G V AIS G++ G P++DL Y E
Sbjct: 134 DGGTRTASITGAYVALVDAVNWLRKR--GGLVGEPITGSVQAISVGVVGGVPMLDLAYEE 191
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
DS D D N VM+ SG VE+QG+AE A F++D +L+LA L + Q +V+
Sbjct: 192 DSRADTDMNVVMSGSGDFVEIQGTAEGAPFNRDLLNELLDLAAGGCVTLKQAQSEVLG 249
>gi|288942595|ref|YP_003444835.1| ribonuclease PH [Allochromatium vinosum DSM 180]
gi|288897967|gb|ADC63803.1| ribonuclease PH [Allochromatium vinosum DSM 180]
Length = 241
Score = 176 bits (447), Expect = 2e-42, Method: Composition-based stats.
Identities = 118/240 (49%), Positives = 162/240 (67%), Gaps = 2/240 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR S R+ ++ R I TR +++AEGS LV+FGDT +L TA++E +VP +++ GWIT
Sbjct: 1 MRPSQRRPDEARPICFTRGFTRHAEGSVLVEFGDTRVLCTASVEPRVPPFLKGKGQGWIT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPRSTG R+ REA G+QGGR+ EIQR+IGRALR+ V L+ALG R I +DCDV+Q
Sbjct: 61 AEYGMLPRSTGERMPREAARGKQGGRTLEIQRLIGRALRAAVYLNALGERTITLDCDVLQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTAAITGAWVAL + + ++ + +K +AA+S G+ G P++DLDY
Sbjct: 121 ADGGTRTAAITGAWVALREAI--DHLLASGQLTADPIKTQIAAVSVGIYQGTPVLDLDYA 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
EDS+ + D N VM G +EVQG+AE F++ A+L L I + Q+ + +
Sbjct: 179 EDSSAETDMNLVMDGEGRFIEVQGTAEGHPFTRAELDALLELGAAGIRSIQAAQRAALED 238
>gi|315150398|gb|EFT94414.1| ribonuclease PH [Enterococcus faecalis TX0012]
Length = 451
Score = 176 bits (447), Expect = 2e-42, Method: Composition-based stats.
Identities = 118/247 (47%), Positives = 157/247 (63%), Gaps = 7/247 (2%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+R R ++R+I++ V K+ EGS ++ FGDT ++ +AT+EEKVP ++R GW+
Sbjct: 2 IRHDSRAPKELRKITIETNVFKHPEGSVVISFGDTKVICSATVEEKVPPFLRGGGTGWVA 61
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEY MLPR+T R RE+ G+ GR+ EIQR+IGR+LR+VVDL LG R I++DCDVIQ
Sbjct: 62 AEYSMLPRATNTRNIRESAKGKLTGRTMEIQRLIGRSLRAVVDLEKLGERSIVVDCDVIQ 121
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPI-VDLDY 179
ADGGTRTA+ITGA+VAL + +K H+AA+S G+L +DLDY
Sbjct: 122 ADGGTRTASITGAFVALRLAVN--HLLMTGALAEDPIKEHLAAVSVGILPDGYCVLDLDY 179
Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI- 238
EDS VD N VMT+SG VE+QG+ E ATFS D ML K I +LI QK+ +
Sbjct: 180 AEDSNAAVDMNIVMTESGEFVEIQGTGEEATFSGDELNTMLFYGKTGIEELIAYQKEALY 239
Query: 239 ---SNEV 242
S EV
Sbjct: 240 ALASEEV 246
>gi|315079990|gb|EFT51966.1| ribonuclease PH [Propionibacterium acnes HL078PA1]
Length = 254
Score = 176 bits (447), Expect = 2e-42, Method: Composition-based stats.
Identities = 110/238 (46%), Positives = 155/238 (65%), Gaps = 2/238 (0%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R+ GR+ +Q+R++ + R AEGS LV FG T +L A++ E VP W + + GW+TA
Sbjct: 16 RIDGRRLDQLRDVRIERGWLSQAEGSVLVSFGRTTVLCNASVTEGVPRWRKGSGLGWVTA 75
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
EY MLPR+T R RE+ G+ GGR+ EI R++GR+LR+VVD ALG II+DCDV+QA
Sbjct: 76 EYEMLPRATNERSGRESRKGKVGGRTHEISRLVGRSLRAVVDDKALGENTIILDCDVLQA 135
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
DGGTRTA+ITGA+VAL D + + +S+ + G V AIS G++ G P++DL Y E
Sbjct: 136 DGGTRTASITGAYVALVDAVNWLR--GRGGLVSEPITGSVQAISVGVVDGIPMLDLAYEE 193
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
DS D D N VM+ SG VE+QG+AE F+++ +L+LA A L + Q + +
Sbjct: 194 DSRADTDMNVVMSGSGDFVEIQGTAEGTPFNRNLLNELLDLAAGGCATLKQAQSEALG 251
>gi|15892898|ref|NP_360612.1| ribonuclease PH [Rickettsia conorii str. Malish 7]
gi|229586977|ref|YP_002845478.1| ribonuclease PH [Rickettsia africae ESF-5]
gi|238651083|ref|YP_002916941.1| ribonuclease PH [Rickettsia peacockii str. Rustic]
gi|21759407|sp|Q92GZ7|RNPH_RICCN RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|259494127|sp|C3PP75|RNPH_RICAE RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|259494128|sp|C4K2U2|RNPH_RICPU RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|15620088|gb|AAL03513.1| ribonuclease PH [Rickettsia conorii str. Malish 7]
gi|228022027|gb|ACP53735.1| Ribonuclease PH [Rickettsia africae ESF-5]
gi|238625181|gb|ACR47887.1| ribonuclease PH [Rickettsia peacockii str. Rustic]
Length = 239
Score = 176 bits (447), Expect = 2e-42, Method: Composition-based stats.
Identities = 133/238 (55%), Positives = 170/238 (71%), Gaps = 2/238 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR SGR+ NQ+R ISL AEGSCL+K G+TH++ +AT E VP ++R GWIT
Sbjct: 1 MRQSGRKSNQLRPISLELSPLINAEGSCLIKIGNTHVMCSATCETTVPPFLRGQNQGWIT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLP ST R+KREA G+QGGR+QEIQR+IGRA+R V+D+ LG RQIIIDCDVI
Sbjct: 61 AEYGMLPGSTSQRIKREAALGKQGGRTQEIQRLIGRAMRCVIDVRKLGERQIIIDCDVIN 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTAAITG++VALH ++ + + + +AAISCG+ G I+DLDY
Sbjct: 121 ADGGTRTAAITGSYVALHLAIRSLMKKRVLKVNPLISQ--IAAISCGIYKGEAILDLDYL 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
EDS DVD+NFV +G+++EVQG+AE+ FS++ F AML LAK A+L KLQ V+
Sbjct: 179 EDSDADVDSNFVFAGNGNLIEVQGTAEKNPFSEEQFLAMLKLAKGGAAELFKLQNQVL 236
>gi|241667227|ref|ZP_04754805.1| tRNA nucleotidyltransferase [Francisella philomiragia subsp.
philomiragia ATCC 25015]
gi|254875778|ref|ZP_05248488.1| ribonuclease PH [Francisella philomiragia subsp. philomiragia ATCC
25015]
gi|254841799|gb|EET20213.1| ribonuclease PH [Francisella philomiragia subsp. philomiragia ATCC
25015]
Length = 235
Score = 176 bits (447), Expect = 2e-42, Method: Composition-based stats.
Identities = 115/232 (49%), Positives = 161/232 (69%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR SGR +Q+R + +T +K+AEGS L++FGDT +L TA++ VP + +++ GW+T
Sbjct: 1 MRPSGRNNDQLRTLKVTHNFTKHAEGSVLIEFGDTKVLCTASVVAGVPRFKKDSGEGWLT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPRST R+ REA G+Q GR+QEIQR+IGRALR+ VDL+ +G I +DCDVIQ
Sbjct: 61 AEYGMLPRSTHTRMDREAARGKQSGRTQEIQRLIGRALRASVDLTKIGENTIKVDCDVIQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+ITGA +A+ D + +M+ + + L VAAIS G+ P++DLDY
Sbjct: 121 ADGGTRTASITGASLAIRDAIDYMKQNGMLDEQTNPLMSQVAAISVGIYNNEPVLDLDYD 180
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
EDS + D N VM +G ++E+QG+AE FS++ F ML LAK I ++ +
Sbjct: 181 EDSNAETDMNVVMNSNGGMIEIQGTAEGKDFSEEEFAKMLGLAKKGIKEIFE 232
>gi|320539880|ref|ZP_08039539.1| defective ribonuclease PH [Serratia symbiotica str. Tucson]
gi|320030066|gb|EFW12086.1| defective ribonuclease PH [Serratia symbiotica str. Tucson]
Length = 238
Score = 176 bits (447), Expect = 2e-42, Method: Composition-based stats.
Identities = 122/239 (51%), Positives = 160/239 (66%), Gaps = 2/239 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR GR +R ++LTR +K+AEGS LV+FGDT +L TAT+EE VP +++ GWIT
Sbjct: 1 MRPVGRAPQHVRPLTLTRHYTKHAEGSVLVEFGDTKVLCTATVEEGVPRFLKGQGQGWIT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEY MLPRST +R REA G+QGGR+ EIQR+I R+LR+ VDL LG II+DCDV+Q
Sbjct: 61 AEYSMLPRSTHSRNVREAAKGKQGGRTLEIQRLIARSLRAAVDLKKLGEFTIILDCDVLQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+ITGA VAL D L + + +KG VAA+S G+L G + DL+Y
Sbjct: 121 ADGGTRTASITGACVALIDALNALVAN--GKLKANPMKGLVAAVSVGILNGEALCDLEYV 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
EDS + D N VM + G ++EVQG+AE FS D A+L LA+ I + + QK ++
Sbjct: 179 EDSAAETDMNVVMMEDGRMIEVQGTAEGEPFSHDELMALLTLARGGIETIFQAQKAALA 237
>gi|163791539|ref|ZP_02185943.1| ribonuclease PH/Ham1 protein [Carnobacterium sp. AT7]
gi|159873175|gb|EDP67275.1| ribonuclease PH/Ham1 protein [Carnobacterium sp. AT7]
Length = 432
Score = 176 bits (447), Expect = 2e-42, Method: Composition-based stats.
Identities = 113/243 (46%), Positives = 155/243 (63%), Gaps = 3/243 (1%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR GR+ ++ R +++ K+ EGS LV FGDT ++ AT+E KVP +++ GW+
Sbjct: 1 MRADGRKNDENRLVTIETNYLKHPEGSVLVSFGDTKVICNATIETKVPRFLKGMGSGWVH 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEY MLPR+T R REA G+ GR+ EIQR+I R+LRS +DL ALG R I +DCDVIQ
Sbjct: 61 AEYSMLPRATNTRNIREAAKGKLSGRTMEIQRLIARSLRSCIDLEALGERSITVDCDVIQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGM-LCGYPIVDLDY 179
ADGGTRTA+ITGA+VAL +Q + D +K +VAAIS G+ G ++DL+Y
Sbjct: 121 ADGGTRTASITGAFVALKLAIQTLLDSGELALS--PIKENVAAISVGILEDGQAVLDLNY 178
Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
EDS +VD N VMT G VE+QG+ E ATFS + +L K I +LI++Q + +
Sbjct: 179 LEDSAANVDMNLVMTSGGQFVEIQGTGEEATFSSEQLAVLLEFGKKGIKELIQVQDNAFN 238
Query: 240 NEV 242
+
Sbjct: 239 QAL 241
>gi|109900580|ref|YP_663835.1| ribonuclease PH [Pseudoalteromonas atlantica T6c]
gi|123063997|sp|Q15MV7|RNPH_PSEA6 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|109702861|gb|ABG42781.1| RNAse PH [Pseudoalteromonas atlantica T6c]
Length = 237
Score = 176 bits (447), Expect = 2e-42, Method: Composition-based stats.
Identities = 114/239 (47%), Positives = 156/239 (65%), Gaps = 2/239 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR + R +Q+R +++TR + +AEGS L++FG+T +L A++ E VP +++ GW+
Sbjct: 1 MRPNDRTASQIRPVTITRNFTCHAEGSVLIEFGNTKVLCNASVTEGVPRFMKGQGKGWVN 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEY MLPR+T R REA G+QGGR+ EIQR+I R+LR+ +DL LG I++DCDVIQ
Sbjct: 61 AEYSMLPRATHTRSDREAARGKQGGRTLEIQRLIARSLRAALDLKLLGENTIVVDCDVIQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+ITGA VAL D L M + +K +AAIS G+ G I DL+Y
Sbjct: 121 ADGGTRTASITGACVALVDALTWMRSK--GIIKTNPMKHMIAAISVGIYKGNAIADLEYT 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
EDS + D N VMTD+G ++EVQG+AE FS + ML LAK I +L QK ++
Sbjct: 179 EDSEAETDMNVVMTDTGKMIEVQGTAEGEPFSIEEMHEMLELAKHGIRELFDEQKAALN 237
>gi|153208640|ref|ZP_01946892.1| ribonuclease PH [Coxiella burnetii 'MSU Goat Q177']
gi|161829800|ref|YP_001596248.1| ribonuclease PH [Coxiella burnetii RSA 331]
gi|165919767|ref|ZP_02219510.1| ribonuclease PH [Coxiella burnetii RSA 334]
gi|61216043|sp|Q83EL9|RNPH_COXBU RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|189043758|sp|A9KGR9|RNPH_COXBN RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|189043759|sp|A9NB33|RNPH_COXBR RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|120575826|gb|EAX32450.1| ribonuclease PH [Coxiella burnetii 'MSU Goat Q177']
gi|161761667|gb|ABX77309.1| ribonuclease PH [Coxiella burnetii RSA 331]
gi|165916850|gb|EDR35454.1| ribonuclease PH [Coxiella burnetii RSA 334]
Length = 237
Score = 176 bits (447), Expect = 2e-42, Method: Composition-based stats.
Identities = 114/239 (47%), Positives = 161/239 (67%), Gaps = 2/239 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR S R N++R +S T + ++YAEGS LV G+T ++ A++ E VP +++N++ GW+T
Sbjct: 1 MRPSKRAANELRPLSFTTQFTRYAEGSVLVTLGNTKVICNASIVEGVPRFLKNSEQGWLT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPRST +R+ REA G+QGGR+ EIQR+IGR+LR+ +DL LG I IDCDVIQ
Sbjct: 61 AEYGMLPRSTHSRMDREASRGKQGGRTVEIQRLIGRSLRAALDLKLLGPYTITIDCDVIQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTAAI G+ +A+ + L+ + LK VAA+S G+ G P++DLDY
Sbjct: 121 ADGGTRTAAINGSCIAMIEALR--HLQRKGILQTDPLKHKVAAVSVGIYKGVPVLDLDYA 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
EDS D N VMTD+ +E+QG+AE F A++NLA+ I +I+ Q++ +S
Sbjct: 179 EDSNAHTDMNVVMTDNDAFIEIQGTAEGDAFHAKELDALINLARHGIKQIIEKQQEALS 237
>gi|315104464|gb|EFT76440.1| ribonuclease PH [Propionibacterium acnes HL050PA2]
Length = 254
Score = 176 bits (447), Expect = 2e-42, Method: Composition-based stats.
Identities = 109/238 (45%), Positives = 155/238 (65%), Gaps = 2/238 (0%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R+ GR+ +Q+R++ + R AEGS LV FG T +L A++ E VP W + + GW+TA
Sbjct: 16 RIDGRRLDQLRDVRIERGWLSQAEGSVLVSFGRTTVLCNASVTEGVPRWRKGSGLGWVTA 75
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
EY MLPR+T R RE+ G+ GGR+ EI R++GR+LR+VVD ALG II+DCDV+QA
Sbjct: 76 EYEMLPRATNERSGRESRKGKVGGRTHEISRLVGRSLRAVVDDKALGENTIILDCDVLQA 135
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
DGGTRTA+ITGA+VAL D + + +S+ + G V AIS G++ G P++DL Y E
Sbjct: 136 DGGTRTASITGAYVALIDAVNWLR--GRGGLVSEPIIGSVQAISVGVVDGIPMLDLAYEE 193
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
DS D D N VM+ +G VE+QG+AE F+++ +L+LA A L + Q + +
Sbjct: 194 DSRADTDMNVVMSGNGDFVEIQGTAEGTPFNRNLLNELLDLAAGGCATLKQAQSEALG 251
>gi|282855012|ref|ZP_06264344.1| tRNA nucleotidyltransferase [Propionibacterium acnes J139]
gi|282581600|gb|EFB86985.1| tRNA nucleotidyltransferase [Propionibacterium acnes J139]
gi|314924268|gb|EFS88099.1| ribonuclease PH [Propionibacterium acnes HL001PA1]
gi|315106207|gb|EFT78183.1| ribonuclease PH [Propionibacterium acnes HL030PA1]
Length = 254
Score = 176 bits (447), Expect = 2e-42, Method: Composition-based stats.
Identities = 109/238 (45%), Positives = 155/238 (65%), Gaps = 2/238 (0%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R+ GR+ +Q+R++ + R AEGS LV FG T +L A++ E VP W + + GW+TA
Sbjct: 16 RIDGRRLDQLRDVRIERGWLSQAEGSVLVSFGRTTVLCNASVTEGVPRWRKGSGLGWVTA 75
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
EY MLPR+T R RE+ G+ GGR+ EI R++GR+LR+VVD ALG II+DCDV+QA
Sbjct: 76 EYEMLPRATNERSGRESRKGKVGGRTHEISRLVGRSLRAVVDDKALGENTIILDCDVLQA 135
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
DGGTRTA+ITGA+VAL D + + +S+ + G V AIS G++ G P++DL Y E
Sbjct: 136 DGGTRTASITGAYVALIDAVNWLR--GRGGLVSEPIIGSVQAISVGVVDGIPMLDLAYEE 193
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
DS D D N VM+ +G VE+QG+AE F+++ +L+LA A L + Q + +
Sbjct: 194 DSRADTDMNVVMSGNGDFVEIQGTAEGTPFNRNLLNELLDLAAGGCATLKQAQSEALG 251
>gi|327332417|gb|EGE74153.1| tRNA nucleotidyltransferase [Propionibacterium acnes HL097PA1]
Length = 280
Score = 176 bits (447), Expect = 2e-42, Method: Composition-based stats.
Identities = 109/238 (45%), Positives = 155/238 (65%), Gaps = 2/238 (0%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R+ GR+ +Q+R++ + R AEGS LV FG T +L A++ E VP W + + GW+TA
Sbjct: 42 RIDGRRLDQLRDVRIERGWLSQAEGSVLVSFGRTTVLCNASVTEGVPRWRKGSGLGWVTA 101
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
EY MLPR+T R RE+ G+ GGR+ EI R++GR+LR+VVD ALG II+DCDV+QA
Sbjct: 102 EYEMLPRATNERSGRESRKGKVGGRTHEISRLVGRSLRAVVDDKALGENTIILDCDVLQA 161
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
DGGTRTA+ITGA+VAL D + + +S+ + G V AIS G++ G P++DL Y E
Sbjct: 162 DGGTRTASITGAYVALIDAVNWLR--GRGGLVSEPITGSVQAISVGVVDGIPMLDLAYEE 219
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
DS D D N VM+ +G VE+QG+AE F+++ +L+LA A L + Q + +
Sbjct: 220 DSRADTDMNVVMSGNGDFVEIQGTAEGTPFNRNLLNELLDLAAGGCATLKQAQSEALG 277
>gi|23099561|ref|NP_693027.1| ribonuclease PH [Oceanobacillus iheyensis HTE831]
gi|61216060|sp|Q8EPJ5|RNPH_OCEIH RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|22777791|dbj|BAC14062.1| ribonuclease PH (tRNA nucleotidyltransferase) [Oceanobacillus
iheyensis HTE831]
Length = 244
Score = 176 bits (447), Expect = 2e-42, Method: Composition-based stats.
Identities = 107/242 (44%), Positives = 156/242 (64%), Gaps = 1/242 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR R+ NQ+R I++T + EGS L++ G+T ++ A++E++VP ++R GWIT
Sbjct: 1 MRNDQREVNQLRNINITTNYISHPEGSVLIEMGNTKVICNASIEDRVPPFMRGQGKGWIT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEY MLPR+T R RE+ G+ GR+ EIQR+IGRALRSVVDL +G R + IDCDVIQ
Sbjct: 61 AEYAMLPRATAQRNIRESSKGKVSGRTMEIQRLIGRALRSVVDLDQIGERTVWIDCDVIQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+ITGA+VA+ + + + + + A + G I+DL+Y
Sbjct: 121 ADGGTRTASITGAFVAMSLAFAKLVEAKTL-KKTPIQDYLAAISVGVLTNGTEILDLNYE 179
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
EDS VD N VMT G VE+QG+ E ATF+ + ML L ++ I L+K+QK+++++
Sbjct: 180 EDSEAAVDMNIVMTGEGEFVEIQGTGEEATFTPNQLQNMLKLGEEGIQQLVKIQKELLAD 239
Query: 241 EV 242
++
Sbjct: 240 KL 241
>gi|258541167|ref|YP_003186600.1| ribonuclease PH [Acetobacter pasteurianus IFO 3283-01]
gi|256632245|dbj|BAH98220.1| ribonuclease PH [Acetobacter pasteurianus IFO 3283-01]
gi|256635302|dbj|BAI01271.1| ribonuclease PH [Acetobacter pasteurianus IFO 3283-03]
gi|256638357|dbj|BAI04319.1| ribonuclease PH [Acetobacter pasteurianus IFO 3283-07]
gi|256641411|dbj|BAI07366.1| ribonuclease PH [Acetobacter pasteurianus IFO 3283-22]
gi|256644466|dbj|BAI10414.1| ribonuclease PH [Acetobacter pasteurianus IFO 3283-26]
gi|256647521|dbj|BAI13462.1| ribonuclease PH [Acetobacter pasteurianus IFO 3283-32]
gi|256650574|dbj|BAI16508.1| ribonuclease PH [Acetobacter pasteurianus IFO 3283-01-42C]
gi|256653565|dbj|BAI19492.1| ribonuclease PH [Acetobacter pasteurianus IFO 3283-12]
Length = 244
Score = 176 bits (447), Expect = 2e-42, Method: Composition-based stats.
Identities = 116/239 (48%), Positives = 158/239 (66%), Gaps = 2/239 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR SGRQ +QMR I++ + +AEGS L++ G T +L TA++E +VP ++R GW+T
Sbjct: 1 MRPSGRQPDQMRPITIETGFAHHAEGSALIRVGGTEVLCTASIENRVPPFLRGKGTGWVT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPR+T R REA G+Q GR+QEIQR+IGR+LR+V DL ALG I +DCDV+
Sbjct: 61 AEYGMLPRATHTRGNREAAKGKQSGRTQEIQRLIGRSLRAVTDLDALGEMSITLDCDVLN 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTR A+ITGAWVAL L + + L+G VAA+SCG+ ++DLDY
Sbjct: 121 ADGGTRCASITGAWVALRLALGKLVATN--VLPRLPLRGQVAAVSCGLTTEGAVLDLDYV 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
EDS+ D NFV+T IVE+QG+AE A F++D F + LA+ + +L + Q +
Sbjct: 179 EDSSASADTNFVLTADRRIVEIQGTAESAPFTEDAFDNLFALARKGVTELFEAQMAAVE 237
>gi|332308581|ref|YP_004436432.1| ribonuclease PH [Glaciecola agarilytica 4H-3-7+YE-5]
gi|332175910|gb|AEE25164.1| ribonuclease PH [Glaciecola agarilytica 4H-3-7+YE-5]
Length = 237
Score = 176 bits (446), Expect = 2e-42, Method: Composition-based stats.
Identities = 115/239 (48%), Positives = 157/239 (65%), Gaps = 2/239 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR + R +Q+R +++TR + +AEGS L++FG+T +L A++ E VP +++ GW+T
Sbjct: 1 MRPNDRTASQIRPVTITRNFTCHAEGSVLIEFGNTKVLCNASVTEGVPRFMKGQGKGWVT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEY MLPR+T R REA G+QGGR+ EIQR+I R+LR+ +DL LG I++DCDVIQ
Sbjct: 61 AEYSMLPRATHTRSDREAARGKQGGRTLEIQRLIARSLRAALDLKLLGENTIVVDCDVIQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+ITGA VAL D L M + +K +AAIS G+ G I DL+Y
Sbjct: 121 ADGGTRTASITGACVALVDALTWMRSK--GIIKTNPMKHMIAAISVGIYKGNAIADLEYT 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
EDS + D N VMTD+G ++EVQG+AE FS + ML LAK I +L QK ++
Sbjct: 179 EDSDAETDMNVVMTDTGKMIEVQGTAEGEPFSIEEMHEMLELAKHGIRELFDEQKAALN 237
>gi|134300519|ref|YP_001114015.1| ribonuclease PH [Desulfotomaculum reducens MI-1]
gi|172044340|sp|A4J7Y7|RNPH_DESRM RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|134053219|gb|ABO51190.1| RNAse PH [Desulfotomaculum reducens MI-1]
Length = 245
Score = 176 bits (446), Expect = 2e-42, Method: Composition-based stats.
Identities = 118/239 (49%), Positives = 168/239 (70%), Gaps = 2/239 (0%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R+ GR++ Q+R + +T +KYAEGS L++ GDT ++ TAT+EE+VP +++ GW+TA
Sbjct: 3 RVDGRKQGQIRPVRMTPNYNKYAEGSVLIEVGDTRVICTATVEERVPPFLKGLGKGWVTA 62
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
EY MLPR+TG+R REA G+ GGR+ EIQR+IGRALRSVV+L ALG R + +DCDVIQA
Sbjct: 63 EYSMLPRATGSRTIREAARGKLGGRTMEIQRLIGRALRSVVNLEALGERSLTMDCDVIQA 122
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
DGGTRTA+ITGA+VA+ L + + + + +AA S G++ G P++DL Y E
Sbjct: 123 DGGTRTASITGAYVAMIFALNRLVEQGMLEK--IPVSDFIAATSVGIVKGRPVIDLCYAE 180
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
DS +VD N VMT +G VE+QG+ E ATFS++ +L+LA I +L K+Q+ V+ +
Sbjct: 181 DSVAEVDMNVVMTGTGRFVEIQGTGEEATFSREEMNQLLDLAAAGIEELNKVQRQVLGD 239
>gi|289425019|ref|ZP_06426798.1| tRNA nucleotidyltransferase [Propionibacterium acnes SK187]
gi|289154718|gb|EFD03404.1| tRNA nucleotidyltransferase [Propionibacterium acnes SK187]
gi|313763384|gb|EFS34748.1| ribonuclease PH [Propionibacterium acnes HL013PA1]
gi|313814692|gb|EFS52406.1| ribonuclease PH [Propionibacterium acnes HL059PA1]
gi|313828238|gb|EFS65952.1| ribonuclease PH [Propionibacterium acnes HL063PA2]
gi|314914538|gb|EFS78369.1| ribonuclease PH [Propionibacterium acnes HL005PA4]
gi|314917606|gb|EFS81437.1| ribonuclease PH [Propionibacterium acnes HL050PA1]
gi|314919638|gb|EFS83469.1| ribonuclease PH [Propionibacterium acnes HL050PA3]
gi|314930289|gb|EFS94120.1| ribonuclease PH [Propionibacterium acnes HL067PA1]
gi|314957645|gb|EFT01748.1| ribonuclease PH [Propionibacterium acnes HL002PA1]
gi|314968972|gb|EFT13070.1| ribonuclease PH [Propionibacterium acnes HL037PA1]
gi|315098009|gb|EFT69985.1| ribonuclease PH [Propionibacterium acnes HL059PA2]
gi|315102645|gb|EFT74621.1| ribonuclease PH [Propionibacterium acnes HL046PA1]
gi|315110460|gb|EFT82436.1| ribonuclease PH [Propionibacterium acnes HL030PA2]
gi|327451224|gb|EGE97878.1| ribonuclease PH [Propionibacterium acnes HL087PA3]
gi|327452581|gb|EGE99235.1| ribonuclease PH [Propionibacterium acnes HL083PA2]
gi|328751977|gb|EGF65593.1| ribonuclease PH [Propionibacterium acnes HL025PA2]
gi|328754779|gb|EGF68395.1| ribonuclease PH [Propionibacterium acnes HL087PA1]
Length = 254
Score = 176 bits (446), Expect = 2e-42, Method: Composition-based stats.
Identities = 109/238 (45%), Positives = 155/238 (65%), Gaps = 2/238 (0%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R+ GR+ +Q+R++ + R AEGS LV FG T +L A++ E VP W + + GW+TA
Sbjct: 16 RIDGRRLDQLRDVRIERGWLSQAEGSVLVSFGRTTVLCNASVTEGVPRWRKGSGLGWVTA 75
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
EY MLPR+T R RE+ G+ GGR+ EI R++GR+LR+VVD ALG II+DCDV+QA
Sbjct: 76 EYEMLPRATNERSGRESRKGKVGGRTHEISRLVGRSLRAVVDDKALGENTIILDCDVLQA 135
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
DGGTRTA+ITGA+VAL D + + +S+ + G V AIS G++ G P++DL Y E
Sbjct: 136 DGGTRTASITGAYVALIDAVNWLR--GRGGLVSEPIIGSVQAISVGVVDGIPMLDLAYEE 193
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
DS D D N VM+ +G VE+QG+AE F+++ +L+LA A L + Q + +
Sbjct: 194 DSRADTDMNVVMSGNGDFVEIQGTAEGTPFNRNLLNELLDLAAGGCATLKQAQSEALG 251
>gi|34581401|ref|ZP_00142881.1| ribonuclease PH [Rickettsia sibirica 246]
gi|28262786|gb|EAA26290.1| ribonuclease PH [Rickettsia sibirica 246]
Length = 239
Score = 176 bits (446), Expect = 2e-42, Method: Composition-based stats.
Identities = 133/238 (55%), Positives = 170/238 (71%), Gaps = 2/238 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR SGR+ NQ+R ISL AEGSCL+K G+TH++ +AT E VP ++R GWIT
Sbjct: 1 MRQSGRKSNQLRPISLELSPLINAEGSCLIKIGNTHVMCSATCETTVPPFLRGQNQGWIT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLP ST R+KREA G+QGGR+QEIQR+IGRA+R V+D+ LG RQIIIDCDVI
Sbjct: 61 AEYGMLPGSTSQRIKREATLGKQGGRTQEIQRLIGRAMRCVIDVRKLGERQIIIDCDVIN 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTAAITG++VALH ++ + + + +AAISCG+ G I+DLDY
Sbjct: 121 ADGGTRTAAITGSYVALHLAIRSLMKKRVLKVNPLISQ--IAAISCGIYKGEAILDLDYL 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
EDS DVD+NFV +G+++EVQG+AE+ FS++ F AML LAK A+L KLQ V+
Sbjct: 179 EDSDADVDSNFVFAGNGNLIEVQGTAEKNPFSEEQFLAMLKLAKGGAAELFKLQNQVL 236
>gi|315170973|gb|EFU14990.1| ribonuclease PH [Enterococcus faecalis TX1342]
Length = 451
Score = 176 bits (446), Expect = 2e-42, Method: Composition-based stats.
Identities = 119/247 (48%), Positives = 158/247 (63%), Gaps = 7/247 (2%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+R R ++R+I++ V K+ EGS ++ FGDT ++ +AT+EEKVP ++R GW+
Sbjct: 2 IRHDSRAPKELRKITIETNVFKHPEGSVVISFGDTKVICSATVEEKVPPFLRGGGTGWVA 61
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEY MLPR+T R RE+ G+ GR+ EIQR+IGR+LR+VVDL LG R I++DCDVIQ
Sbjct: 62 AEYSMLPRATNTRNIRESAKGKLTGRTMEIQRLIGRSLRAVVDLEKLGERSIVVDCDVIQ 121
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPI-VDLDY 179
ADGGTRTA+ITGA+VAL + +K H+AA+S G+L +DLDY
Sbjct: 122 ADGGTRTASITGAFVALRLAIN--HLLMTGALAEDPIKEHLAAVSVGILPDGYCVLDLDY 179
Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI- 238
EDS VD N VMT+SG VE+QG+ E ATFS D AML K I +LI QK+ +
Sbjct: 180 AEDSNAAVDMNIVMTESGEFVEIQGTGEEATFSGDELNAMLFYGKTGIEELITYQKEALY 239
Query: 239 ---SNEV 242
S EV
Sbjct: 240 ALASEEV 246
>gi|238063132|ref|ZP_04607841.1| ribonuclease PH [Micromonospora sp. ATCC 39149]
gi|237884943|gb|EEP73771.1| ribonuclease PH [Micromonospora sp. ATCC 39149]
Length = 241
Score = 176 bits (446), Expect = 2e-42, Method: Composition-based stats.
Identities = 113/239 (47%), Positives = 158/239 (66%), Gaps = 1/239 (0%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R GR +Q+R ++L+R S + EGS LV+FG T +L TA++ E VP W + + GW+TA
Sbjct: 3 RPDGRLPDQLRPVTLSRGWSTHPEGSVLVEFGGTRVLCTASVTEGVPRWRKGSGLGWVTA 62
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
EY MLPR+T R RE+V GR GGR+ EI R+IGR+LR+ +DL ALG +++DCDV+QA
Sbjct: 63 EYAMLPRATNTRSDRESVKGRVGGRTHEISRLIGRSLRASIDLKALGENSVVLDCDVLQA 122
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKF-QLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
DGGTRTAA+TGA+VALHD + + + +V+ VAA+S G++ G +DL Y
Sbjct: 123 DGGTRTAAVTGAYVALHDAVSWLAARKALAGKPEKVMHRSVAAVSVGVIAGEARLDLCYE 182
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
ED +VD N V T SG VEVQG+ E F++D A+L+LA A+L + Q+ +S
Sbjct: 183 EDVAAEVDMNVVCTGSGEFVEVQGTGESGVFARDQLDALLDLAVAGCAELAEAQRKALS 241
>gi|332284454|ref|YP_004416365.1| ribonuclease PH [Pusillimonas sp. T7-7]
gi|330428407|gb|AEC19741.1| ribonuclease PH [Pusillimonas sp. T7-7]
Length = 271
Score = 176 bits (446), Expect = 2e-42, Method: Composition-based stats.
Identities = 117/238 (49%), Positives = 163/238 (68%), Gaps = 2/238 (0%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
RLSGR +++R + + +++AEGS L+K GDTH+L A++ EKVP +++ GW+TA
Sbjct: 36 RLSGRAASELRPVVIETGYTRHAEGSVLIKAGDTHVLCNASVLEKVPPFLKGKSQGWVTA 95
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
EYGMLPRST R REA G+Q GR+QEIQR+IGR+LR+V DL+ALG R + +DCDV+QA
Sbjct: 96 EYGMLPRSTHTRSDREAARGKQSGRTQEIQRLIGRSLRAVFDLTALGERTVQLDCDVLQA 155
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
DGGTR A+ITGAWVA ++ + + Q + + VAA+S G++ G ++DLDY E
Sbjct: 156 DGGTRCASITGAWVAAALAVRGLVEQGVLAQSPLLDQ--VAAVSVGLVGGQALLDLDYTE 213
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
DS D N VMT +GH VEVQG+AE TF + +L+LA+D I L+ QK ++
Sbjct: 214 DSGCGADMNIVMTGAGHFVEVQGTAEGQTFERKALDELLDLAQDGIRQLLAEQKRALA 271
>gi|314956852|gb|EFT01006.1| ribonuclease PH [Propionibacterium acnes HL027PA1]
Length = 254
Score = 176 bits (446), Expect = 2e-42, Method: Composition-based stats.
Identities = 109/238 (45%), Positives = 155/238 (65%), Gaps = 2/238 (0%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R+ GR+ +Q+R++ + R AEGS LV FG T +L A++ E VP W + + GW+TA
Sbjct: 16 RIDGRRLDQLRDVRIERGWLSQAEGSVLVSFGRTTVLCNASVTEGVPRWRKGSGLGWVTA 75
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
EY MLPR+T R RE+ G+ GGR+ EI R++GR+LR+VVD ALG II+DCDV+QA
Sbjct: 76 EYEMLPRATNERSGRESRKGKVGGRTHEISRLVGRSLRAVVDDKALGENTIILDCDVLQA 135
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
DGGTRTA+ITGA+VAL D + + +S+ + G V AIS G++ G P++DL Y E
Sbjct: 136 DGGTRTASITGAYVALIDAVNWLR--GRGGLVSEPIIGSVQAISVGVVDGIPMLDLAYEE 193
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
DS D D N VM+ +G VE+QG+AE F+++ +L+LA A L + Q + +
Sbjct: 194 DSRADTDVNVVMSGNGDFVEIQGTAEGTPFNRNLLNELLDLAAGGCATLKQAQSEALG 251
>gi|289422671|ref|ZP_06424511.1| tRNA nucleotidyltransferase [Peptostreptococcus anaerobius 653-L]
gi|289156850|gb|EFD05475.1| tRNA nucleotidyltransferase [Peptostreptococcus anaerobius 653-L]
Length = 475
Score = 176 bits (446), Expect = 2e-42, Method: Composition-based stats.
Identities = 110/239 (46%), Positives = 157/239 (65%), Gaps = 2/239 (0%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R GR +Q+R++ +TR +KY+ GS L++ G+T ++ TA++EE VP +++ GWITA
Sbjct: 26 RPDGRSLDQIRDVKITRNYTKYSAGSVLIEVGNTKVICTASIEEGVPHFMKGAGSGWITA 85
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
EY MLP +T +R KR++ G+ GRSQEIQR+IGR++RSVVD+ ALG R I IDCDVIQA
Sbjct: 86 EYSMLPSATESRKKRDSSKGKVDGRSQEIQRLIGRSIRSVVDMEALGERTIWIDCDVIQA 145
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
DGGTRTA+ITGA+VAL D L + +K +AAIS G++ +D+ Y E
Sbjct: 146 DGGTRTASITGAYVALADALYKLYKS--GQIKKMPVKNLLAAISIGIIDDEVRLDICYEE 203
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
DS VD N VM + G +E+QG+ E F++D +L LA+ DL++LQ+ +
Sbjct: 204 DSKAMVDTNVVMNNRGEFIEIQGTGEERPFTRDELSRILELAEKGNRDLMRLQRQALGE 262
>gi|302865661|ref|YP_003834298.1| ribonuclease PH [Micromonospora aurantiaca ATCC 27029]
gi|315502225|ref|YP_004081112.1| ribonuclease ph [Micromonospora sp. L5]
gi|302568520|gb|ADL44722.1| ribonuclease PH [Micromonospora aurantiaca ATCC 27029]
gi|315408844|gb|ADU06961.1| ribonuclease PH [Micromonospora sp. L5]
Length = 242
Score = 176 bits (446), Expect = 2e-42, Method: Composition-based stats.
Identities = 116/240 (48%), Positives = 162/240 (67%), Gaps = 1/240 (0%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R GRQ +Q+R ++LTR S + EGS LV+FG T +L TA++ E VP W + + GW+TA
Sbjct: 3 RPDGRQPDQLRPVTLTRGWSTHPEGSVLVEFGATRVLCTASVTEGVPRWRKGSGLGWVTA 62
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
EY MLPR+T R RE+V G+ GGR+ EI R+IGR+LR+ VDL ALG I++DCDV+QA
Sbjct: 63 EYAMLPRATNTRSDRESVRGKVGGRTHEISRLIGRSLRACVDLKALGENSIVLDCDVLQA 122
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKF-QLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
DGGTRTAAITGA+VALHD + + + ++ +V+ VAA+S G++ G P++DL Y
Sbjct: 123 DGGTRTAAITGAYVALHDAVTWLAERKALAGKVEKVMHRSVAAVSVGVIGGEPMLDLCYA 182
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
ED T +VD N V T +G VEVQG+ E F++D A+L+L +L Q+ +S+
Sbjct: 183 EDVTAEVDMNVVCTGTGDFVEVQGTGEAGVFARDQLDALLDLGVAGCLELADAQRKALSS 242
>gi|15615630|ref|NP_243934.1| ribonuclease PH [Bacillus halodurans C-125]
gi|21759418|sp|Q9K8D8|RNPH_BACHD RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|10175690|dbj|BAB06787.1| ribonuclease PH [Bacillus halodurans C-125]
Length = 257
Score = 176 bits (446), Expect = 2e-42, Method: Composition-based stats.
Identities = 107/240 (44%), Positives = 152/240 (63%), Gaps = 3/240 (1%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR+ R+ +++R IS+ + EGS L+ G+T ++ TA+LE++VP ++R GWIT
Sbjct: 1 MRMDERKADELRPISIEINYLHHPEGSVLISIGNTKVICTASLEDRVPPFLRGQGKGWIT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEY MLPR+T R RE+ G+ GR+ EIQR+IGRALRS++DL +G R + IDCDVIQ
Sbjct: 61 AEYSMLPRATEQRNMRESTRGKVSGRTMEIQRLIGRALRSIIDLDKIGERTVWIDCDVIQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG-YPIVDLDY 179
ADGGTRT +ITGA+VAL ++ +N + +AA+S G+ I+DL Y
Sbjct: 121 ADGGTRTTSITGAFVALSLAMEK--ALANGAIQEWPIDDFLAAVSVGIDPKLGAILDLCY 178
Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
ED+ +VD N VMT G VE+QG+ E ATFS + +L LA I LI+ Q++ +
Sbjct: 179 AEDAQAEVDMNVVMTGKGEYVELQGTGEEATFSHNQLLTILALADKGIKQLIEEQRNALG 238
>gi|315144635|gb|EFT88651.1| ribonuclease PH [Enterococcus faecalis TX2141]
gi|315160934|gb|EFU04951.1| ribonuclease PH [Enterococcus faecalis TX0645]
Length = 451
Score = 176 bits (446), Expect = 2e-42, Method: Composition-based stats.
Identities = 119/247 (48%), Positives = 158/247 (63%), Gaps = 7/247 (2%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+R R ++R+I++ V K+ EGS ++ FGDT ++ +AT+EEKVP ++R GW+
Sbjct: 2 IRHDSRAPKELRKITIETNVFKHPEGSVVISFGDTKVICSATVEEKVPPFLRGGGTGWVA 61
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEY MLPR+T R RE+ G+ GR+ EIQR+IGR+LR+VVDL LG R I++DCDVIQ
Sbjct: 62 AEYSMLPRATNTRNIRESAKGKLTGRTMEIQRLIGRSLRAVVDLEKLGERSIVVDCDVIQ 121
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPI-VDLDY 179
ADGGTRTA+ITGA+VAL + +K H+AA+S G+L +DLDY
Sbjct: 122 ADGGTRTASITGAFVALRLAVN--HLLMTGALAEDPIKEHLAAVSVGILPDGYCVLDLDY 179
Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI- 238
EDS VD N VMT+SG VE+QG+ E ATFS D AML K I +LI QK+ +
Sbjct: 180 AEDSNAAVDMNIVMTESGEFVEIQGTGEEATFSGDELNAMLFYGKTGIEELITYQKEALY 239
Query: 239 ---SNEV 242
S EV
Sbjct: 240 ALASEEV 246
>gi|258544503|ref|ZP_05704737.1| tRNA nucleotidyltransferase [Cardiobacterium hominis ATCC 15826]
gi|258520238|gb|EEV89097.1| tRNA nucleotidyltransferase [Cardiobacterium hominis ATCC 15826]
Length = 238
Score = 176 bits (446), Expect = 2e-42, Method: Composition-based stats.
Identities = 121/239 (50%), Positives = 166/239 (69%), Gaps = 2/239 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR S R+ +Q+R +S+ R V+KYAEGS L++ GDTH+L TA++EEKVP ++R GW+T
Sbjct: 1 MRASNRRPDQLRPVSIERGVNKYAEGSALIRCGDTHVLCTASVEEKVPPFLRGKNQGWVT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPR+T R RE+ G+Q GR+ EIQR+IGR+LR+VVDL+ALG R I IDCDV+Q
Sbjct: 61 AEYGMLPRATHERTVRESARGKQQGRTVEIQRLIGRSLRAVVDLTALGERAITIDCDVLQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTAAI+G +VAL D ++ + L G +AA+S G+ G P++DL+Y
Sbjct: 121 ADGGTRTAAISGGFVALADAIRTLI--QQGRLKQNPLHGQLAAVSVGVYRGTPLLDLEYA 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
EDS + D N VM D G +E+QG+AE F + AML LA I +++++QK +
Sbjct: 179 EDSEAETDMNIVMNDGGAFIEIQGTAEGHAFRHEEMQAMLALADKGIREIMQVQKQALG 237
>gi|17546878|ref|NP_520280.1| ribonuclease PH [Ralstonia solanacearum GMI1000]
gi|21759400|sp|Q8XXF5|RNPH_RALSO RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|17429178|emb|CAD15866.1| probable ribonuclease ph (rnase ph) (trnanucleotidyltransferase)
protein [Ralstonia solanacearum GMI1000]
Length = 238
Score = 176 bits (446), Expect = 2e-42, Method: Composition-based stats.
Identities = 128/239 (53%), Positives = 166/239 (69%), Gaps = 2/239 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR SGRQ +Q+R ++LTR +++AEGS LV FGDTH+L TA++ KVP + + GW+T
Sbjct: 1 MRPSGRQPDQLRPVTLTRHYTRHAEGSVLVCFGDTHVLCTASVLPKVPPHKKGSGEGWVT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPRST R REA G+Q GR+QEIQR+IGRA+RSV DLSALG I +DCDV+Q
Sbjct: 61 AEYGMLPRSTHTRSDREAARGKQSGRTQEIQRLIGRAMRSVFDLSALGEHTIHLDCDVLQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+ITGA+VA HD + M + ++ VAA+S G++ G P++DLDY
Sbjct: 121 ADGGTRTASITGAFVAAHDAISVMRKK--GQLTGEPIRDFVAAVSVGVVDGVPVLDLDYP 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
ED++ D D N VMT +G VEVQG+AE F++ A+L LA I LI LQK +
Sbjct: 179 EDASCDTDMNIVMTGAGGFVEVQGTAEGTPFTRTEMDALLGLADHGIRTLIGLQKQALG 237
>gi|76580232|gb|ABA49707.1| ribonuclease PH [Burkholderia pseudomallei 1710b]
Length = 622
Score = 176 bits (446), Expect = 2e-42, Method: Composition-based stats.
Identities = 124/239 (51%), Positives = 172/239 (71%), Gaps = 2/239 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+R SGR+ +Q+R++ +TR +K+AEG+ LV+FGDT ++ TA++ E+VP ++R GW+T
Sbjct: 385 LRPSGRRADQLRDVRITRHYTKHAEGAVLVEFGDTKVICTASVAERVPEFLRERGQGWLT 444
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPR+T R REA G+Q GR+QEIQR+IGRALR+V DL+ALG R + +DCDVIQ
Sbjct: 445 AEYGMLPRATHTRSDREAARGKQTGRTQEIQRLIGRALRAVFDLNALGPRTLHLDCDVIQ 504
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+ITGA+VA HD + + + + +VAAIS G+ G P++DLDY
Sbjct: 505 ADGGTRTASITGAFVAAHDAVTKLVAAGRIARS--PITDYVAAISVGVFGGTPVLDLDYD 562
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
EDS D D N VMT +G VEVQG+AE A FS+ A+L+LA+ I +L++LQ+ +
Sbjct: 563 EDSACDTDMNVVMTGAGGFVEVQGTAEGAPFSRTEMNALLDLAQAGIGELVRLQRAALE 621
>gi|314967394|gb|EFT11493.1| ribonuclease PH [Propionibacterium acnes HL082PA2]
gi|315093635|gb|EFT65611.1| ribonuclease PH [Propionibacterium acnes HL060PA1]
gi|327325475|gb|EGE67279.1| tRNA nucleotidyltransferase [Propionibacterium acnes HL103PA1]
Length = 244
Score = 176 bits (446), Expect = 2e-42, Method: Composition-based stats.
Identities = 109/238 (45%), Positives = 155/238 (65%), Gaps = 2/238 (0%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R+ GR+ +Q+R++ + R AEGS LV FG T +L A++ E VP W + + GW+TA
Sbjct: 6 RIDGRRLDQLRDVRIERGWLSQAEGSVLVSFGRTTVLCNASVTEGVPRWRKGSGLGWVTA 65
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
EY MLPR+T R RE+ G+ GGR+ EI R++GR+LR+VVD ALG II+DCDV+QA
Sbjct: 66 EYEMLPRATNERSGRESRKGKVGGRTHEISRLVGRSLRAVVDDKALGENTIILDCDVLQA 125
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
DGGTRTA+ITGA+VAL D + + +S+ + G V AIS G++ G P++DL Y E
Sbjct: 126 DGGTRTASITGAYVALIDAVNWLR--GRGGLVSEPIIGSVQAISVGVVDGIPMLDLAYEE 183
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
DS D D N VM+ +G VE+QG+AE F+++ +L+LA A L + Q + +
Sbjct: 184 DSRADTDMNVVMSGNGDFVEIQGTAEGTPFNRNLLNELLDLAAGGCATLKQAQSEALG 241
>gi|239827937|ref|YP_002950561.1| ribonuclease PH [Geobacillus sp. WCH70]
gi|259494121|sp|C5D5M7|RNPH_GEOSW RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|239808230|gb|ACS25295.1| ribonuclease PH [Geobacillus sp. WCH70]
Length = 255
Score = 176 bits (446), Expect = 2e-42, Method: Composition-based stats.
Identities = 108/241 (44%), Positives = 156/241 (64%), Gaps = 3/241 (1%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR+ GR+ Q+R + + + K+AEGS + GDT ++ TA++++KVP ++R GWIT
Sbjct: 1 MRIDGRENKQLRPVHMEKHFIKHAEGSVFITVGDTKVICTASIDDKVPPFMRGGGKGWIT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEY MLPR+T R RE+ G+ GR+ EIQR+IGRALRSVV+L LG + + IDCDVIQ
Sbjct: 61 AEYAMLPRATEQRNVRESSKGKLSGRTMEIQRLIGRALRSVVNLDKLGEKTVWIDCDVIQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY-PIVDLDY 179
ADGGTRTA+ITGA+VA+ + + K + +AA S G+ + I+DL+Y
Sbjct: 121 ADGGTRTASITGAYVAMVLAFAKLMEE--KKLDELPVNDFLAATSVGIDPEHGIILDLNY 178
Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
ED+ +VD N VMT +G VE+QG+ E ATFS++ +L+ A+ I LI +Q+ +
Sbjct: 179 AEDARAEVDMNIVMTGAGRFVEIQGTGEEATFSREQLNELLDTAEVGIRQLIDIQRKTLG 238
Query: 240 N 240
Sbjct: 239 E 239
>gi|302390319|ref|YP_003826140.1| RNAse PH [Thermosediminibacter oceani DSM 16646]
gi|302200947|gb|ADL08517.1| RNAse PH [Thermosediminibacter oceani DSM 16646]
Length = 252
Score = 176 bits (445), Expect = 3e-42, Method: Composition-based stats.
Identities = 117/241 (48%), Positives = 166/241 (68%), Gaps = 4/241 (1%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R GR+ +++R +++ RR +KYAEGS L++ GDT ++ TAT++EKVP ++R GW+TA
Sbjct: 3 RADGREFDEIRPVNIIRRFNKYAEGSVLIEAGDTKVICTATVDEKVPPFLRGKGQGWVTA 62
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
EY MLPR+T R S + GR+ EIQR+IGRA+RSVVDL+ALG R + +DCDVIQA
Sbjct: 63 EYSMLPRATEIR--NIRESLKPSGRTMEIQRLIGRAMRSVVDLAALGERTVWLDCDVIQA 120
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
DGGTRTAAITGA+VAL D ++++D + VAA+S G++ G ++DL++ E
Sbjct: 121 DGGTRTAAITGAFVALVDAFKYLKDN--GIIEVIPVNSFVAAVSVGIVDGEKLLDLNFEE 178
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
D VD N VMTD G +VEVQG+ E F++ ML+LA+ + +LI +QK V+S+
Sbjct: 179 DCRAQVDMNVVMTDKGQLVEVQGTGEAFPFTRQDLNDMLDLAQKGVFELISIQKQVLSDV 238
Query: 242 V 242
V
Sbjct: 239 V 239
>gi|228941669|ref|ZP_04104216.1| Ribonuclease PH [Bacillus thuringiensis serovar berliner ATCC
10792]
gi|228974596|ref|ZP_04135162.1| Ribonuclease PH [Bacillus thuringiensis serovar thuringiensis str.
T01001]
gi|228981191|ref|ZP_04141491.1| Ribonuclease PH [Bacillus thuringiensis Bt407]
gi|228778391|gb|EEM26658.1| Ribonuclease PH [Bacillus thuringiensis Bt407]
gi|228784999|gb|EEM33012.1| Ribonuclease PH [Bacillus thuringiensis serovar thuringiensis str.
T01001]
gi|228817881|gb|EEM63959.1| Ribonuclease PH [Bacillus thuringiensis serovar berliner ATCC
10792]
gi|326942277|gb|AEA18173.1| ribonuclease PH [Bacillus thuringiensis serovar chinensis CT-43]
Length = 245
Score = 176 bits (445), Expect = 3e-42, Method: Composition-based stats.
Identities = 112/243 (46%), Positives = 161/243 (66%), Gaps = 3/243 (1%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR+ GR++ ++R I + K+ EGS L++ GDT ++ +AT+EE+VP ++R GW+T
Sbjct: 1 MRVDGREKTELRHIHIHTNYLKHPEGSVLIEVGDTKVICSATIEERVPPFMRGEGKGWVT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEY M+PR+T R RE+ G+ GR+ EIQR+IGRALR+VVDL ALG R + IDCDVIQ
Sbjct: 61 AEYAMIPRATEQRTIRESSKGKVTGRTMEIQRLIGRALRAVVDLEALGERTVWIDCDVIQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY-PIVDLDY 179
ADGGTRTA+ITGA+VA+ + + + +K ++AA S G++ ++DL+Y
Sbjct: 121 ADGGTRTASITGAYVAMVLAFEKL--LQAEKVSKIPVKDYLAATSVGIVEEQGVVLDLNY 178
Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
EDS DVD N +MT G VEVQG+ E ATFS+ +L+ A+ I LI +QK+ +
Sbjct: 179 AEDSKADVDMNVIMTGKGQFVEVQGTGEEATFSRAQLNELLDAAEKGIFQLIDIQKEALG 238
Query: 240 NEV 242
+ V
Sbjct: 239 DIV 241
>gi|167626670|ref|YP_001677170.1| ribonuclease PH [Francisella philomiragia subsp. philomiragia ATCC
25017]
gi|189043763|sp|B0U040|RNPH_FRAP2 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|167596671|gb|ABZ86669.1| tRNA nucleotidyltransferase [Francisella philomiragia subsp.
philomiragia ATCC 25017]
Length = 235
Score = 176 bits (445), Expect = 3e-42, Method: Composition-based stats.
Identities = 115/232 (49%), Positives = 161/232 (69%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR SGR +Q+R + +T +K+AEGS L++FGDT +L TA++ VP + +++ GW+T
Sbjct: 1 MRPSGRNNDQLRTLKVTHNFTKHAEGSVLIEFGDTKVLCTASVVAGVPRFKKDSGEGWLT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPRST R+ REA G+Q GR+QEIQR+IGRALR+ VDL+ +G I +DCDVIQ
Sbjct: 61 AEYGMLPRSTHTRMDREAARGKQSGRTQEIQRLIGRALRASVDLTKIGENTIKVDCDVIQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+ITGA +A+ D + +M+ + + L VAAIS G+ P++DLDY
Sbjct: 121 ADGGTRTASITGASLAIRDAIDYMKQNGMLDEQTSPLMSQVAAISVGIFNNEPVLDLDYD 180
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
EDS + D N VM +G ++E+QG+AE FS++ F ML LAK I ++ +
Sbjct: 181 EDSNAETDMNVVMNSNGGMIEIQGTAEGKDFSEEEFAKMLGLAKKGIKEIFE 232
>gi|114321593|ref|YP_743276.1| ribonuclease PH [Alkalilimnicola ehrlichii MLHE-1]
gi|122310932|sp|Q0A5V1|RNPH_ALHEH RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|114227987|gb|ABI57786.1| RNAse PH [Alkalilimnicola ehrlichii MLHE-1]
Length = 238
Score = 176 bits (445), Expect = 3e-42, Method: Composition-based stats.
Identities = 125/239 (52%), Positives = 169/239 (70%), Gaps = 2/239 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR SGR+ +++R + LTR +++AEGS LV+FGDT +L TA++EE+VP W+RN GW+T
Sbjct: 1 MRPSGRKPDELRPVRLTRHYTRHAEGSVLVEFGDTRVLCTASVEERVPPWLRNQGRGWVT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPRSTG R REA G+Q GR+ EIQR+IGRALR+ VDL ALG R++++DCDV+Q
Sbjct: 61 AEYGMLPRSTGTRNDREAARGKQQGRTIEIQRLIGRALRAAVDLEALGERRVVLDCDVLQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTAAITGA+VAL D + + + G VAA+S G+ G P++DLDY
Sbjct: 121 ADGGTRTAAITGAYVALVDACNLLRKEGRIRRS--PIFGQVAAVSVGIYQGTPVLDLDYA 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
EDS + D N VM ++G +E+QG+AE F +D AM LA+ +A LI+ Q+ +
Sbjct: 179 EDSEAETDMNVVMNEAGGFIELQGTAEGHAFRRDELNAMTELAELGVAQLIETQRQALE 237
>gi|300721256|ref|YP_003710526.1| RNase PH [Xenorhabdus nematophila ATCC 19061]
gi|297627743|emb|CBJ88269.1| RNase PH [Xenorhabdus nematophila ATCC 19061]
Length = 247
Score = 176 bits (445), Expect = 3e-42, Method: Composition-based stats.
Identities = 117/240 (48%), Positives = 160/240 (66%), Gaps = 2/240 (0%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R +GR Q+R I +TR +K+AEGS LV+FGDT +L A++EE +P +++ GWITA
Sbjct: 7 RPAGRTAGQVRPIKMTRHYTKHAEGSVLVEFGDTKVLCNASVEEGIPRFLKGQGQGWITA 66
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
EYGMLPR+T +R REA G+Q GR+ EIQR+I R+LR+ VDL LG I +DCDVIQA
Sbjct: 67 EYGMLPRATNSRNAREAARGKQTGRTMEIQRLIARSLRAAVDLKKLGEFTITLDCDVIQA 126
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
DGGTRTAAI+GA VAL D L + + LK VAA+S G++ G + DL+Y E
Sbjct: 127 DGGTRTAAISGACVALVDALNKLVADGKLKES--PLKSMVAAVSVGIVGGEGLCDLEYVE 184
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
DS + D N VM D G ++EVQG+AE FS D ++L+LAK+ + + + Q+D + +
Sbjct: 185 DSAAETDMNVVMIDDGRMIEVQGTAEGEPFSHDELLSLLSLAKEGLETIFEAQRDALKQD 244
>gi|323359606|ref|YP_004226002.1| RNase PH [Microbacterium testaceum StLB037]
gi|323275977|dbj|BAJ76122.1| RNase PH [Microbacterium testaceum StLB037]
Length = 241
Score = 176 bits (445), Expect = 3e-42, Method: Composition-based stats.
Identities = 113/238 (47%), Positives = 154/238 (64%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R GR +Q+R +++ R S +AEGS L+ FG T +L TA+ VP W+ GW+TA
Sbjct: 3 RKDGRTTDQLRPVTIERGWSAHAEGSALITFGGTKVLCTASFTNGVPRWLTGKGKGWVTA 62
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
EY MLPR+T +R RE++ G+ GGR+ EI R+IGRALR+VVD ALG I+IDCDV+QA
Sbjct: 63 EYAMLPRATNSRNDRESIKGKVGGRTHEISRLIGRALRAVVDTKALGENTIVIDCDVLQA 122
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
DGGTRTAAITGA+VAL D + + Q S+VL V+A+S G++ G P++DL Y E
Sbjct: 123 DGGTRTAAITGAYVALADAIAWGREKKFIAQRSEVLIDSVSAVSVGIIDGEPMLDLAYVE 182
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
D + D N V+T G VEVQG+AE A F + +L+LA + A+L +Q +
Sbjct: 183 DVRAETDMNVVVTGRGLFVEVQGTAEGAPFDKAELDRLLDLAVNGCAELRGIQTAALE 240
>gi|126656098|ref|ZP_01727482.1| ribonuclease PH [Cyanothece sp. CCY0110]
gi|126622378|gb|EAZ93084.1| ribonuclease PH [Cyanothece sp. CCY0110]
Length = 240
Score = 176 bits (445), Expect = 3e-42, Method: Composition-based stats.
Identities = 103/239 (43%), Positives = 156/239 (65%), Gaps = 4/239 (1%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R GRQ NQ+R ++ ++++ GS +++ G+T +L TA++E++VP ++ + GW+TA
Sbjct: 5 RPDGRQPNQLRPVNFELNFTRFSAGSVVIECGETKVLCTASIEDRVPRFLLGSGQGWLTA 64
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
EY MLP +T R +R + GR+QEIQR+IGR+LRS +DL LG R I IDCDV+QA
Sbjct: 65 EYRMLPSATQERQRR--ELLKLSGRTQEIQRLIGRSLRSCIDLQQLGERSITIDCDVLQA 122
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
D GTRTA+ITG +VAL + + Q L+ VAAIS G++ G +DL+Y E
Sbjct: 123 DAGTRTASITGGYVALGLAVNKLIKQGELIQS--PLRFPVAAISVGLIEGEAFLDLNYPE 180
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
DS D+D N VMT++ ++EVQG+AE +F++ +L+LA+ I +L+ LQ V++
Sbjct: 181 DSKADIDFNVVMTENLDLIEVQGTAEENSFTRSQLNDILDLAEIGIKELVSLQNKVLNE 239
>gi|62263530|gb|AAX78169.1| unknown protein [synthetic construct]
Length = 270
Score = 176 bits (445), Expect = 3e-42, Method: Composition-based stats.
Identities = 116/232 (50%), Positives = 162/232 (69%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR SGR +Q+R + +T +K+AEGS L++FGDT ++ TA++ VP + +++ GW+T
Sbjct: 27 MRPSGRNNDQLRNLKVTHNFTKHAEGSVLIEFGDTKVICTASVVAGVPKFKKDSGEGWLT 86
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPRST R+ REA G+Q GR+QEIQR+IGRALR+ VDL+A+G I +DCDVIQ
Sbjct: 87 AEYGMLPRSTHTRMDREAARGKQSGRTQEIQRLIGRALRASVDLTAIGENTIKVDCDVIQ 146
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+ITGA +A+ D +++M+ + + L VAAIS G+ P++DLDY
Sbjct: 147 ADGGTRTASITGASLAIADAIEYMKQNGMLDEQANPLLSQVAAISVGIYNNEPVLDLDYD 206
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
EDS + D N VM +G I+E+QG+AE FS++ F ML LAK I ++
Sbjct: 207 EDSNAETDMNVVMNSNGGIIEIQGTAEGKDFSEEEFAKMLGLAKKGIKEIFA 258
>gi|332798597|ref|YP_004460096.1| Ribonuclease PH [Tepidanaerobacter sp. Re1]
gi|332696332|gb|AEE90789.1| Ribonuclease PH [Tepidanaerobacter sp. Re1]
Length = 238
Score = 176 bits (445), Expect = 3e-42, Method: Composition-based stats.
Identities = 119/237 (50%), Positives = 167/237 (70%), Gaps = 4/237 (1%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R+ GR +++R I++TR +KYAEGS L++ GDT ++ TAT++EKVP ++R GWITA
Sbjct: 3 RVDGRANDEIRPITITRNFNKYAEGSVLIEAGDTKVVCTATVDEKVPPFLRGKGQGWITA 62
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
EY MLPR+T R + R GR+ EIQR+IGRALRSVVDLSALG R I +DCDVIQA
Sbjct: 63 EYSMLPRATEVR--NIRETLRPSGRTMEIQRLIGRALRSVVDLSALGERTIWLDCDVIQA 120
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
DGGTRTA+ITGA++AL D ++ ++D K + +K +VAAIS G++ G ++DL + E
Sbjct: 121 DGGTRTASITGAFIALGDAIRTLKDN--KEIETNPIKSYVAAISAGIVDGEKMLDLRFEE 178
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
DS VD N VMTD G IVE+QG+ E F++ +++LA I++L+ +QK ++
Sbjct: 179 DSRAQVDMNLVMTDEGQIVEIQGTGEAFPFTRQDMNDLIDLAFKGISELVCIQKKLL 235
>gi|254418052|ref|ZP_05031776.1| ribonuclease PH [Brevundimonas sp. BAL3]
gi|196184229|gb|EDX79205.1| ribonuclease PH [Brevundimonas sp. BAL3]
Length = 241
Score = 176 bits (445), Expect = 3e-42, Method: Composition-based stats.
Identities = 124/239 (51%), Positives = 171/239 (71%), Gaps = 2/239 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR S R ++Q+R +++ V++YAEGSCL+ FG T +L TA++EE +P W+R GW+T
Sbjct: 1 MRHSQRTDDQLRPVTIETGVNRYAEGSCLITFGHTKVLVTASVEETIPGWMRGKGQGWVT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPR+T R +REA +G+Q GR+QEIQR+IGR+LR+VVDL ALG RQ+++DCDVIQ
Sbjct: 61 AEYGMLPRATHTRGRREAAAGKQTGRTQEIQRLIGRSLRAVVDLKALGERQVVLDCDVIQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+ITGAWVA+ L ++ D S + VAA+SCG+ G P++DLDY
Sbjct: 121 ADGGTRTASITGAWVAMASALNYLRDE--GVLKSDPILDQVAAVSCGVCDGVPVLDLDYE 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
EDS + D+NFV+T +G IVEVQ + E+ FS+ F + +LA+ +L LQK +
Sbjct: 179 EDSEAEADSNFVLTGAGQIVEVQATGEKRGFSRAEFDRLFSLAEIGCTELFALQKAALE 237
>gi|304320412|ref|YP_003854055.1| ribonuclease PH [Parvularcula bermudensis HTCC2503]
gi|303299314|gb|ADM08913.1| ribonuclease PH [Parvularcula bermudensis HTCC2503]
Length = 234
Score = 176 bits (445), Expect = 3e-42, Method: Composition-based stats.
Identities = 128/235 (54%), Positives = 166/235 (70%), Gaps = 3/235 (1%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR SGR N+MR+++ V++YAEGSCLV+FG+TH+L TA+ EE VP W++N + GW+T
Sbjct: 1 MRPSGRAFNEMRDVTFELGVNRYAEGSCLVRFGNTHVLCTASFEENVPPWLKNQRRGWVT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEY MLPR+T R +RE G GR+QEIQR+IGR+LR+VVDL+ALG RQI +DCDV+Q
Sbjct: 61 AEYSMLPRATHTRGRRERDKG-PSGRTQEIQRLIGRSLRAVVDLNALGERQIQVDCDVLQ 119
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+ITG +VAL + S + L VAAISCG+ P+VDLDY
Sbjct: 120 ADGGTRTASITGGYVALKQAIDW--ALSAGVLTTSPLTDSVAAISCGLYNRAPVVDLDYD 177
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
EDST DANFV T +G IVE+Q +AE F+ D F A+++LAK +L + QK
Sbjct: 178 EDSTAQADANFVFTGTGGIVEIQATAEGDPFADDEFAALVSLAKAACQELSEKQK 232
>gi|291612874|ref|YP_003523031.1| ribonuclease PH [Sideroxydans lithotrophicus ES-1]
gi|291582986|gb|ADE10644.1| ribonuclease PH [Sideroxydans lithotrophicus ES-1]
Length = 238
Score = 176 bits (445), Expect = 3e-42, Method: Composition-based stats.
Identities = 125/238 (52%), Positives = 165/238 (69%), Gaps = 2/238 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR S R+ +Q+R I +TR +K+AEGS L++ GDT ++ TA++EE+VP + + GW+T
Sbjct: 1 MRPSQRKHDQLRAIRITRHYTKHAEGSVLIECGDTKVICTASVEERVPPHKKGSGEGWVT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPRSTG R+ REA G+Q GR+QEIQR+IGR+LR+VVDL LG R + +DCDVIQ
Sbjct: 61 AEYGMLPRSTGERMSREAAKGKQSGRTQEIQRLIGRSLRAVVDLGKLGERTVTLDCDVIQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+ITGA+VAL D + + LK VAAIS G+ G P++DLDY
Sbjct: 121 ADGGTRTASITGAFVALSDAVAAL--MQQGLVKENPLKHAVAAISVGIYQGIPVLDLDYL 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
EDS D D N VM +GH VEVQG+AE FS++ +L LAK I L+ +Q+ +
Sbjct: 179 EDSDCDTDMNVVMLGNGHFVEVQGTAEGHAFSREEMDTLLELAKHGITQLVAMQQKAL 236
>gi|300867701|ref|ZP_07112346.1| ribonuclease PH [Oscillatoria sp. PCC 6506]
gi|300334284|emb|CBN57518.1| ribonuclease PH [Oscillatoria sp. PCC 6506]
Length = 243
Score = 176 bits (445), Expect = 3e-42, Method: Composition-based stats.
Identities = 105/238 (44%), Positives = 153/238 (64%), Gaps = 4/238 (1%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R GRQ NQ+R IS R +K+A GS L + GDT +L T +++ VP +++ T GW+TA
Sbjct: 5 RPDGRQPNQLRPISFQREFTKFATGSVLARSGDTQVLCTVSIQPGVPKFLQFTGQGWLTA 64
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
EY MLP +T R +E + GR+QEIQR+IGR+LRS +D++ LG R II+D DV+QA
Sbjct: 65 EYRMLPGATPQR--QERELMKLSGRTQEIQRLIGRSLRSCLDMNLLGERTIIVDADVLQA 122
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
D GTRT +ITG +VAL D L + Q V + VAA+S G+L G P +DL+Y E
Sbjct: 123 DAGTRTTSITGGFVALADALDKLVKNGELEQSPIVSQ--VAAVSVGLLEGEPFLDLNYPE 180
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
D +VD N VM ++ I+E+QG+AE +FS+ +L++A+ I +L++ Q+ +
Sbjct: 181 DVAAEVDFNVVMKENLSIIEMQGTAEEGSFSRTQLNQILDVAEKGIKELLEFQRQALR 238
>gi|294791355|ref|ZP_06756512.1| tRNA nucleotidyltransferase [Scardovia inopinata F0304]
gi|294457826|gb|EFG26180.1| tRNA nucleotidyltransferase [Scardovia inopinata F0304]
Length = 259
Score = 176 bits (445), Expect = 3e-42, Method: Composition-based stats.
Identities = 111/242 (45%), Positives = 157/242 (64%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+R GR +Q+R +++TR ++ EGS L++ G T +L TAT + VP W +++ GW+T
Sbjct: 17 IRADGRAVDQLRPVTITRGWTQAPEGSVLIECGQTRVLCTATFSQGVPRWRKDSGLGWVT 76
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEY M+PR+T +R RE+V G+ GGR+ EI R+IGR LR +VDL ALG I IDCDV+Q
Sbjct: 77 AEYAMIPRATADRTDRESVRGKIGGRTHEISRLIGRVLRGIVDLGALGENMIQIDCDVLQ 136
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+ITGA+VAL D + + +VL V+A+S G++ G P++DL Y
Sbjct: 137 ADGGTRTASITGAYVALADAVSWAKKNKKIKAAKRVLLDQVSAVSVGIINGTPMLDLPYT 196
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
EDS D N MT SG +E+QG+AE FS+D +L+LA+ L +LQK +
Sbjct: 197 EDSQAMTDMNVAMTASGKFIEIQGTAEHRPFSRDELNTLLDLAQKGNTQLQELQKQALKK 256
Query: 241 EV 242
E+
Sbjct: 257 EI 258
>gi|257092562|ref|YP_003166203.1| ribonuclease PH [Candidatus Accumulibacter phosphatis clade IIA
str. UW-1]
gi|257045086|gb|ACV34274.1| ribonuclease PH [Candidatus Accumulibacter phosphatis clade IIA
str. UW-1]
Length = 238
Score = 176 bits (445), Expect = 3e-42, Method: Composition-based stats.
Identities = 129/240 (53%), Positives = 167/240 (69%), Gaps = 2/240 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR S RQ +Q+R++ +TR+ + +AEGS L++ GDT +L TA++EE VP + R T GW+T
Sbjct: 1 MRPSQRQPSQLRQVRITRQFTSHAEGSVLIEIGDTRVLCTASVEEFVPPFRRGTGAGWVT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPRST R +REA G+Q GR+QEIQR+IGRALR+V DL ALG RQI +DCDV+Q
Sbjct: 61 AEYGMLPRSTHTRTQREAAKGKQTGRTQEIQRLIGRALRAVTDLKALGERQITLDCDVLQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTR AAITGAW+AL+D + + L HVAAIS G+ G P++DLDY
Sbjct: 121 ADGGTRCAAITGAWLALNDACA--HLLAQGRLVVNPLSDHVAAISVGIYQGSPVLDLDYA 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
EDS+ D D N VMT SG IVE+QG+AE F++ +L+LA I LI QK ++
Sbjct: 179 EDSSCDTDMNVVMTGSGGIVEIQGTAEGVPFTRGQMNQLLDLADAGIGQLIARQKAALAQ 238
>gi|187931269|ref|YP_001891253.1| ribonuclease PH [Francisella tularensis subsp. mediasiatica FSC147]
gi|226736911|sp|B2SF43|RNPH_FRATM RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|187712178|gb|ACD30475.1| ribonuclease PH [Francisella tularensis subsp. mediasiatica FSC147]
Length = 235
Score = 176 bits (445), Expect = 3e-42, Method: Composition-based stats.
Identities = 117/232 (50%), Positives = 162/232 (69%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR SGR +Q+R + +T +K+AEGS L++FGDT ++ TA++ VP + +++ GW+T
Sbjct: 1 MRPSGRNNDQLRNLKVTHNFTKHAEGSVLIEFGDTKVICTASVVAGVPKFKKDSGEGWLT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPRST R+ REA G+Q GR+QEIQR+IGRALR+ VDL+A+G I IDCDVIQ
Sbjct: 61 AEYGMLPRSTHMRMDREAARGKQSGRTQEIQRLIGRALRASVDLTAIGENTIKIDCDVIQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+ITGA +A+ D +++M+ + + L VAAIS G+ P++DLDY
Sbjct: 121 ADGGTRTASITGASLAIADAIEYMKQNGMLDEQANPLLSQVAAISVGIYNNEPVLDLDYD 180
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
EDS + D N VM +G I+E+QG+AE FS++ F ML LAK I ++
Sbjct: 181 EDSNAETDMNVVMNSNGGIIEIQGTAEGKDFSEEEFAKMLGLAKKGIKEIFA 232
>gi|124515183|gb|EAY56694.1| ribonuclease PH [Leptospirillum rubarum]
Length = 245
Score = 176 bits (445), Expect = 3e-42, Method: Composition-based stats.
Identities = 115/237 (48%), Positives = 159/237 (67%), Gaps = 2/237 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR GR+ +R +S+ V+ YAEGS LV+ G+T +L TA++EEKVP ++++ GW+T
Sbjct: 2 MRSDGRKPENLRSLSIKTGVNLYAEGSVLVEMGNTKVLCTASVEEKVPPFLKDQGKGWVT 61
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPRST R REA G+Q GR+QEIQR+IGR+LRSVVD +G R I IDCDV+Q
Sbjct: 62 AEYGMLPRSTHERNSREAAKGKQSGRTQEIQRLIGRSLRSVVDTKKMGVRTITIDCDVLQ 121
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+I+G +VA+ + ++ ++AA+S G++ G P++DL Y
Sbjct: 122 ADGGTRTASISGGFVAMCLAFSELHKR--GLMPEWPVREYLAAVSVGVVEGEPVLDLCYT 179
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
EDS + D N VMT+SGH VE+QG+AE FS+ +L L + I ++I QK V
Sbjct: 180 EDSGAETDMNLVMTESGHFVEIQGTAEETPFSRQTLDTLLGLGEKGIREIIVCQKSV 236
>gi|300932726|ref|ZP_07147982.1| ribonuclease PH [Corynebacterium resistens DSM 45100]
Length = 250
Score = 176 bits (445), Expect = 3e-42, Method: Composition-based stats.
Identities = 112/239 (46%), Positives = 158/239 (66%), Gaps = 2/239 (0%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R GR ++MR + +TR + GS LV+FG+T ++ TA++E VP + +++ GW+TA
Sbjct: 11 RADGRAVDEMRPVRITRGFTTNPAGSVLVEFGNTRVMCTASVEIGVPRFKKDSGEGWLTA 70
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
EY MLP ST R+ RE++ G+ GR+ EI R++GRALR+ VDL+ LG I IDCDV+QA
Sbjct: 71 EYAMLPSSTHERMPRESMKGKVKGRTHEISRLVGRALRAAVDLTQLGENTIAIDCDVLQA 130
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
DGGTRTAAITGA+VAL D L+ +++ + L VAA+S G++ G +DL Y E
Sbjct: 131 DGGTRTAAITGAYVALADALKVLKE--QGVVPGEPLLPPVAAVSVGIIDGVACLDLPYEE 188
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
DS DVD N VMT+ G VE+QG+ E A F + AMLNLA+ + +LI QK+ ++
Sbjct: 189 DSRADVDMNVVMTEQGRFVEIQGTGEHAEFDRAELNAMLNLAEGGLRELISAQKEALAQ 247
>gi|295691344|ref|YP_003595037.1| ribonuclease PH [Caulobacter segnis ATCC 21756]
gi|295433247|gb|ADG12419.1| ribonuclease PH [Caulobacter segnis ATCC 21756]
Length = 238
Score = 176 bits (445), Expect = 3e-42, Method: Composition-based stats.
Identities = 129/239 (53%), Positives = 174/239 (72%), Gaps = 2/239 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR S R +QMR ++L V++YAEGSCL+ FG T +L TAT+EE +P W+RN GW+T
Sbjct: 1 MRPSERAPDQMRAVTLETGVNRYAEGSCLISFGHTKVLVTATVEESLPGWLRNKGQGWVT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPR+T +R +REA +G+Q GR+QEIQR+IGR+LR+VVDL ALG RQI +DCDV+Q
Sbjct: 61 AEYGMLPRATHSRGRREAAAGKQSGRTQEIQRLIGRSLRAVVDLKALGERQITLDCDVVQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTAAITGAWVAL +++ D + + G VAA+SCG+ P++DLDY
Sbjct: 121 ADGGTRTAAITGAWVALRLATKYLLDE--GVLKTDPIVGQVAAVSCGVFNDTPVLDLDYE 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
EDS+ + D+NFV+T++G IVE+Q + E+ FS+ F A+ LA+ I +L LQ+ I
Sbjct: 179 EDSSAEADSNFVLTNAGDIVEIQATGEKRGFSRAEFEALFGLAEKGIGELFTLQRAAIG 237
>gi|50843137|ref|YP_056364.1| ribonuclease PH [Propionibacterium acnes KPA171202]
gi|50840739|gb|AAT83406.1| probable ribonuclease PH [Propionibacterium acnes KPA171202]
Length = 254
Score = 176 bits (445), Expect = 3e-42, Method: Composition-based stats.
Identities = 109/238 (45%), Positives = 155/238 (65%), Gaps = 2/238 (0%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R+ GR+ +Q+R++ + R AEGS LV FG T +L A++ E VP W + + GW+TA
Sbjct: 16 RIDGRRLDQLRDVRIERGWLSQAEGSVLVSFGRTTVLCNASVTEGVPRWRKGSGLGWVTA 75
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
EY MLPR+T R RE+ G+ GGR+ EI R++GR+LR+VVD ALG II+DCDV+QA
Sbjct: 76 EYEMLPRATNERSGRESRKGKVGGRTHEISRLVGRSLRAVVDDKALGENTIILDCDVLQA 135
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
DGGTRTA+ITGA+VAL D + + +S+ + G V AIS G++ G P++DL Y E
Sbjct: 136 DGGTRTASITGAYVALIDAVNWLR--GRGGLVSEPIIGSVQAISVGVVDGIPMLDLAYKE 193
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
DS D D N VM+ +G VE+QG+AE F+++ +L+LA A L + Q + +
Sbjct: 194 DSRADTDMNVVMSGNGDFVEIQGTAEGTPFNRNLLNELLDLAAGGCATLKQAQSEALG 251
>gi|296533566|ref|ZP_06896135.1| tRNA nucleotidyltransferase [Roseomonas cervicalis ATCC 49957]
gi|296266103|gb|EFH12159.1| tRNA nucleotidyltransferase [Roseomonas cervicalis ATCC 49957]
Length = 239
Score = 176 bits (445), Expect = 3e-42, Method: Composition-based stats.
Identities = 124/239 (51%), Positives = 162/239 (67%), Gaps = 2/239 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR SGR + +R +SL V+++AEGSCL++ G T +L TA++E +VP ++R GW+T
Sbjct: 1 MRPSGRAADALRSVSLQPGVARHAEGSCLIRMGVTEVLCTASVEGRVPPFLRGKGEGWVT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPR+T R REA G+Q GR+QEIQR+IGR+LR+VVD A+G I++DCDVI
Sbjct: 61 AEYGMLPRATHTRGDREAARGKQSGRTQEIQRLIGRSLRAVVDRKAMGEVSIVLDCDVIT 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTR AAITGAWVALH L+H + + L+ VAAISCG+ G PI+DL+Y
Sbjct: 121 ADGGTRCAAITGAWVALHQALEHCVTKN--LISANPLRDQVAAISCGLWEGEPILDLEYV 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
EDS DANFV+T G IVEVQG+AE FS ++ LA+ A+L Q+ I
Sbjct: 179 EDSAAQADANFVLTGKGGIVEVQGTAEGEPFSDAQLLGLMALARKGTAELFAAQRRAIG 237
>gi|254303318|ref|ZP_04970676.1| tRNA nucleotidyltransferase [Fusobacterium nucleatum subsp.
polymorphum ATCC 10953]
gi|148323510|gb|EDK88760.1| tRNA nucleotidyltransferase [Fusobacterium nucleatum subsp.
polymorphum ATCC 10953]
Length = 434
Score = 176 bits (445), Expect = 3e-42, Method: Composition-based stats.
Identities = 109/241 (45%), Positives = 158/241 (65%), Gaps = 2/241 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+R GR+ ++ R+I + + V+ YAEGS L++ G+T ++ TA++ +KVP ++R T GW+T
Sbjct: 2 LREDGRKFDEERKIKIIKNVNIYAEGSVLIEVGNTKVICTASVSDKVPSFLRGTGKGWVT 61
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEY MLPR+T R REA G+ GR+ EIQR+IGRALR+ +DL LG R I IDCDVIQ
Sbjct: 62 AEYSMLPRATNERNPREASKGKLTGRTVEIQRLIGRALRASIDLEKLGERLITIDCDVIQ 121
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRT +ITG ++AL ++ + + + VAAIS G + +VDL Y
Sbjct: 122 ADGGTRTTSITGGYIALALAIKKLLQEEILEENPLISN--VAAISVGKIDSNLMVDLKYS 179
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
EDS +VD N +M G +EVQG+ E +TF++ +L+LA++ I LI+LQ +I+
Sbjct: 180 EDSAAEVDMNVIMNKKGEFIEVQGTGEESTFTRAELNQLLDLAENSIKRLIELQDRIINQ 239
Query: 241 E 241
E
Sbjct: 240 E 240
>gi|152998356|ref|YP_001343191.1| ribonuclease PH [Marinomonas sp. MWYL1]
gi|189043766|sp|A6W3H7|RNPH_MARMS RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|150839280|gb|ABR73256.1| ribonuclease PH [Marinomonas sp. MWYL1]
Length = 239
Score = 176 bits (445), Expect = 3e-42, Method: Composition-based stats.
Identities = 117/241 (48%), Positives = 166/241 (68%), Gaps = 2/241 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR SGR+ +Q+R + +TR +K+AEGS L++ GDT ++ TAT+ VP +++ GWIT
Sbjct: 1 MRPSGREADQLRPLKITRNFTKHAEGSVLIECGDTKVICTATVVSGVPRFLKGKGQGWIT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPRST +R+ REA G+QGGR+ EIQR+IGR+LR+ VDL LG I IDCDVIQ
Sbjct: 61 AEYGMLPRSTHSRMDREAARGKQGGRTVEIQRLIGRSLRAAVDLKKLGENTITIDCDVIQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+ITG +VAL D ++ + + K + +AAIS G+ G P++DLDY
Sbjct: 121 ADGGTRTASITGGFVALADAMRVLVEN--KKVKENPIVSQIAAISVGVYKGVPVLDLDYP 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
EDS + D N +M D G +E+QG+AE FS +H ML +A+ IA++++ Q+ + +
Sbjct: 179 EDSNAETDMNVIMNDKGGFIEIQGTAEGEAFSDEHMMGMLAVARKGIAEIMEAQRAALFD 238
Query: 241 E 241
+
Sbjct: 239 K 239
>gi|228993220|ref|ZP_04153141.1| Ribonuclease PH [Bacillus pseudomycoides DSM 12442]
gi|228999269|ref|ZP_04158849.1| Ribonuclease PH [Bacillus mycoides Rock3-17]
gi|229006824|ref|ZP_04164457.1| Ribonuclease PH [Bacillus mycoides Rock1-4]
gi|228754446|gb|EEM03858.1| Ribonuclease PH [Bacillus mycoides Rock1-4]
gi|228760466|gb|EEM09432.1| Ribonuclease PH [Bacillus mycoides Rock3-17]
gi|228766546|gb|EEM15188.1| Ribonuclease PH [Bacillus pseudomycoides DSM 12442]
Length = 245
Score = 176 bits (445), Expect = 3e-42, Method: Composition-based stats.
Identities = 115/243 (47%), Positives = 162/243 (66%), Gaps = 3/243 (1%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR+ GRQ ++R I L K+ EGS L++ GDT ++ +AT+EE+VP ++R GW+T
Sbjct: 1 MRVDGRQAAELRNIHLHTNYLKHPEGSVLIEVGDTKVICSATIEERVPPFMRGEGKGWVT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEY M+PR+T R RE+ G+ GR+ EIQR+IGRALR+VVDL ALG R + IDCDVIQ
Sbjct: 61 AEYAMIPRATEQRTIRESSKGKVTGRTMEIQRLIGRALRAVVDLEALGERTVWIDCDVIQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY-PIVDLDY 179
ADGGTRTA+ITGA+VA+ + + + +K ++AA S G++ ++DL+Y
Sbjct: 121 ADGGTRTASITGAYVAMVLAFEKL--LQAEKVSKIPVKDYLAATSVGIVEDQGVVLDLNY 178
Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
EDS DVD N +MT GH VEVQG+ E ATFS+ +L+ A++ I LI+ QK+ +
Sbjct: 179 AEDSQADVDMNVIMTGKGHFVEVQGTGEEATFSRAELNELLDAAENGILQLIEKQKEALG 238
Query: 240 NEV 242
+ V
Sbjct: 239 DIV 241
>gi|157828824|ref|YP_001495066.1| ribonuclease PH [Rickettsia rickettsii str. 'Sheila Smith']
gi|165933550|ref|YP_001650339.1| ribonuclease PH [Rickettsia rickettsii str. Iowa]
gi|166228313|sp|A8GT33|RNPH_RICRS RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|189043770|sp|B0BUM3|RNPH_RICRO RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|157801305|gb|ABV76558.1| ribonuclease PH [Rickettsia rickettsii str. 'Sheila Smith']
gi|165908637|gb|ABY72933.1| ribonuclease PH [Rickettsia rickettsii str. Iowa]
Length = 239
Score = 176 bits (445), Expect = 3e-42, Method: Composition-based stats.
Identities = 133/238 (55%), Positives = 170/238 (71%), Gaps = 2/238 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR SGR+ NQ+R ISL AEGSCL+K G+TH++ +AT E VP ++R GWIT
Sbjct: 1 MRQSGRKSNQLRPISLELSPLINAEGSCLIKIGNTHVMCSATCETTVPPFLRGQNQGWIT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLP ST R+KREA G+QGGR+QEIQR+IGRA+R V+D+ LG RQIIIDCDVI
Sbjct: 61 AEYGMLPGSTSQRIKREAALGQQGGRTQEIQRLIGRAMRCVIDVRKLGERQIIIDCDVIN 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTAAITG++VALH ++ + + + +AAISCG+ G I+DLDY
Sbjct: 121 ADGGTRTAAITGSYVALHLAIRSLMKKRVLKVNPLISQ--IAAISCGIYKGEVILDLDYL 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
EDS DVD+NFV +G+++EVQG+AE+ FS++ F AML LAK A+L KLQ V+
Sbjct: 179 EDSDADVDSNFVFAGNGNLIEVQGTAEKNPFSEEQFLAMLKLAKGGAAELFKLQNQVL 236
>gi|312882913|ref|ZP_07742645.1| ribonuclease PH [Vibrio caribbenthicus ATCC BAA-2122]
gi|309369432|gb|EFP96952.1| ribonuclease PH [Vibrio caribbenthicus ATCC BAA-2122]
Length = 238
Score = 176 bits (445), Expect = 3e-42, Method: Composition-based stats.
Identities = 123/240 (51%), Positives = 167/240 (69%), Gaps = 2/240 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR + R +Q+R I +TR + YAEGS LV+FG+T +L AT+EE VP W++ GW+T
Sbjct: 1 MRPNDRLADQIRPIKMTRHYTAYAEGSVLVEFGNTKVLCNATVEENVPRWLKGQGKGWVT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPRST +R++REA SG+QGGR+ EIQR+I R+LR+VVDL A+G I +DCDVIQ
Sbjct: 61 AEYGMLPRSTHSRMRREASSGKQGGRTLEIQRLIARSLRAVVDLEAMGEMMITVDCDVIQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+I+GA VA+ D + + +KGHVAA+S G+L + DL+Y
Sbjct: 121 ADGGTRTASISGASVAMADAFETLVKS--GKLKHNPMKGHVAAVSVGILGQDILCDLEYV 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
EDS D D N VMT+ G ++EVQG+AE FS+ +L++A+ IAD++K QK + N
Sbjct: 179 EDSAADTDMNVVMTEDGRMIEVQGTAEGEPFSRQELNVLLDVAEKGIADIVKAQKLALEN 238
>gi|145628603|ref|ZP_01784403.1| ribonuclease PH [Haemophilus influenzae 22.1-21]
gi|144979073|gb|EDJ88759.1| ribonuclease PH [Haemophilus influenzae 22.1-21]
Length = 238
Score = 175 bits (444), Expect = 4e-42, Method: Composition-based stats.
Identities = 118/239 (49%), Positives = 165/239 (69%), Gaps = 2/239 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR + R+ NQ R+I +TR +K+AEGS LV+FGDT +L TAT+E+ VP +++ GW+T
Sbjct: 1 MRPNNRENNQPRQIKITRNYTKHAEGSVLVEFGDTKVLCTATVEDAVPRFLKGQGQGWVT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPRST +R++REA G+QGGR+ EIQR+I R+LR++VDL ALG R I +DCDVIQ
Sbjct: 61 AEYGMLPRSTHSRMQREAAKGKQGGRTMEIQRLIARSLRAMVDLKALGERAITLDCDVIQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+ITGA VAL D + + + + +KG V+AIS G++ G + DL+Y
Sbjct: 121 ADGGTRTASITGAAVALCDAINGLIEN--GTLKTNPIKGLVSAISVGIVEGQAVCDLEYV 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
EDS + D N VM + G ++EVQG+A FS + +L+LAK + Q++ +
Sbjct: 179 EDSAAETDMNVVMMEDGRMIEVQGTAGSEPFSHEELLTLLDLAKQGCNQIFIAQREALG 237
>gi|52786716|ref|YP_092545.1| ribonuclease PH [Bacillus licheniformis ATCC 14580]
gi|161760685|ref|YP_080129.2| ribonuclease PH [Bacillus licheniformis ATCC 14580]
gi|319647246|ref|ZP_08001468.1| ribonuclease PH [Bacillus sp. BT1B_CT2]
gi|81609007|sp|Q65GG2|RNPH_BACLD RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|52349218|gb|AAU41852.1| Rph [Bacillus licheniformis ATCC 14580]
gi|145903088|gb|AAU24491.2| ribonuclease PH [Bacillus licheniformis ATCC 14580]
gi|317390593|gb|EFV71398.1| ribonuclease PH [Bacillus sp. BT1B_CT2]
Length = 246
Score = 175 bits (444), Expect = 4e-42, Method: Composition-based stats.
Identities = 106/240 (44%), Positives = 151/240 (62%), Gaps = 1/240 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR GR+ N++R +++ + EGS L+ G T ++ A++E++VP ++R GWIT
Sbjct: 1 MRYDGRKNNELRPVTMDLDFITHPEGSVLITVGGTKVICNASVEDRVPPFLRGEGKGWIT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEY MLPR+T R RE+ G+ GR+ EIQR+IGRALR+VVDL LG R I IDCDVIQ
Sbjct: 61 AEYSMLPRATNQRTIRESSKGKISGRTMEIQRLIGRALRAVVDLEKLGERTIWIDCDVIQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+ITGA+ A+ + + + ++ + A I+DL+Y
Sbjct: 121 ADGGTRTASITGAFTAMALAVGRLVEKGALKEMP-ITDFLAATSVGIDKEKGLILDLNYQ 179
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
EDS +VD N VMT G VE+QG+ E ATFS+ +L LA+ IA+L++ QK+V+ +
Sbjct: 180 EDSAAEVDMNVVMTGEGRFVELQGTGEEATFSRSELDGLLELAEKGIAELLEKQKEVLGD 239
>gi|209364175|ref|YP_001425114.2| ribonuclease PH [Coxiella burnetii Dugway 5J108-111]
gi|212213192|ref|YP_002304128.1| ribonuclease PH [Coxiella burnetii CbuG_Q212]
gi|212218134|ref|YP_002304921.1| ribonuclease PH [Coxiella burnetii CbuK_Q154]
gi|215918932|ref|NP_819342.2| ribonuclease PH [Coxiella burnetii RSA 493]
gi|206583817|gb|AAO89856.2| ribonuclease PH [Coxiella burnetii RSA 493]
gi|207082108|gb|ABS77511.2| ribonuclease PH [Coxiella burnetii Dugway 5J108-111]
gi|212011602|gb|ACJ18983.1| ribonuclease PH [Coxiella burnetii CbuG_Q212]
gi|212012396|gb|ACJ19776.1| ribonuclease PH [Coxiella burnetii CbuK_Q154]
Length = 239
Score = 175 bits (444), Expect = 4e-42, Method: Composition-based stats.
Identities = 114/239 (47%), Positives = 161/239 (67%), Gaps = 2/239 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR S R N++R +S T + ++YAEGS LV G+T ++ A++ E VP +++N++ GW+T
Sbjct: 3 MRPSKRAANELRPLSFTTQFTRYAEGSVLVTLGNTKVICNASIVEGVPRFLKNSEQGWLT 62
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPRST +R+ REA G+QGGR+ EIQR+IGR+LR+ +DL LG I IDCDVIQ
Sbjct: 63 AEYGMLPRSTHSRMDREASRGKQGGRTVEIQRLIGRSLRAALDLKLLGPYTITIDCDVIQ 122
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTAAI G+ +A+ + L+ + LK VAA+S G+ G P++DLDY
Sbjct: 123 ADGGTRTAAINGSCIAMIEALR--HLQRKGILQTDPLKHKVAAVSVGIYKGVPVLDLDYA 180
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
EDS D N VMTD+ +E+QG+AE F A++NLA+ I +I+ Q++ +S
Sbjct: 181 EDSNAHTDMNVVMTDNDAFIEIQGTAEGDAFHAKELDALINLARHGIKQIIEKQQEALS 239
>gi|313199824|ref|YP_004038482.1| ribonuclease ph [Methylovorus sp. MP688]
gi|312439140|gb|ADQ83246.1| ribonuclease PH [Methylovorus sp. MP688]
Length = 238
Score = 175 bits (444), Expect = 4e-42, Method: Composition-based stats.
Identities = 129/239 (53%), Positives = 165/239 (69%), Gaps = 2/239 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR S R+ +Q+R I + R +K+AEGS LVKFGDTH+L TA+++EKVP ++R GW+T
Sbjct: 1 MRPSQRETHQLRPIEIIRHYTKHAEGSVLVKFGDTHVLCTASVDEKVPGFLRGKNQGWVT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPRSTG+R+ REA G+Q GR+QEIQR+IGR+LR+++DL LG R I IDCDVIQ
Sbjct: 61 AEYGMLPRSTGSRMDREAARGKQSGRTQEIQRLIGRSLRAIIDLEKLGERSIQIDCDVIQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+ITGA+VALHD + + L VAA+S G+ G P++DLDY
Sbjct: 121 ADGGTRTASITGAYVALHDAISRLLA--QGLISESPLLDSVAAVSVGVYQGTPVLDLDYI 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
EDS D D N VMT SG VE+QG+AE F + ML+LA I +L LQ +
Sbjct: 179 EDSDCDTDMNVVMTGSGGYVEIQGTAEGVPFQRADMDRMLDLAAAGIRELTTLQTKALG 237
>gi|118594148|ref|ZP_01551495.1| tRNA nucleotidyltransferase [Methylophilales bacterium HTCC2181]
gi|118439926|gb|EAV46553.1| tRNA nucleotidyltransferase [Methylophilales bacterium HTCC2181]
Length = 240
Score = 175 bits (444), Expect = 4e-42, Method: Composition-based stats.
Identities = 115/241 (47%), Positives = 162/241 (67%), Gaps = 2/241 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR S R +++R I R +K+AEGS LVK GDTH++ A++EE VP +++ GW+T
Sbjct: 1 MRASNRNADELRPIEFIRSYTKHAEGSVLVKCGDTHVICNASIEENVPSFLKGKGQGWVT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPRST +R+ RE+ G+Q GR+QEIQR+IGR+LR+++DL LG R I IDCDVIQ
Sbjct: 61 AEYGMLPRSTSSRMGRESSRGKQSGRTQEIQRLIGRSLRAIIDLKKLGERTIFIDCDVIQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+I+G++VALHD ++ + + + +AAIS G+ ++DLDY
Sbjct: 121 ADGGTRTASISGSYVALHDAIEFLLSNKKITESPIIDS--IAAISAGIKGADILLDLDYS 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
EDS D D NFVMT G VE+QG+AE F++D + N+A I +I +Q + +
Sbjct: 179 EDSECDTDMNFVMTGKGSFVEIQGTAEGIPFTKDEMDQLTNVASKGIQSIINIQSEALDK 238
Query: 241 E 241
+
Sbjct: 239 K 239
>gi|288553636|ref|YP_003425571.1| ribonuclease PH [Bacillus pseudofirmus OF4]
gi|288544796|gb|ADC48679.1| ribonuclease PH [Bacillus pseudofirmus OF4]
Length = 251
Score = 175 bits (444), Expect = 4e-42, Method: Composition-based stats.
Identities = 106/240 (44%), Positives = 148/240 (61%), Gaps = 1/240 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR GRQ N++R + L K+ EGS L+ GDT ++ TA++EE+VP ++R GWIT
Sbjct: 1 MRSDGRQVNELRAVQLDTDYLKHPEGSVLISMGDTKVICTASIEERVPPFMRGQGKGWIT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEY MLPR+T R RE+ G+ GR+ EIQR+IGR+LR+++DL LG R I IDCDVIQ
Sbjct: 61 AEYSMLPRATEQRTIRESSKGKVTGRTMEIQRLIGRSLRTILDLDQLGERTIWIDCDVIQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+ITGA+VAL + + + + A ++DL Y
Sbjct: 121 ADGGTRTASITGAFVALSIAVNKAVERG-LIKSWPIKDYLAAVSVGVEPTHGEVLDLCYV 179
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
ED+ +VD N +MT + VE+QG+ E ATFS++ +L+LA+ I +LI QK +
Sbjct: 180 EDAAAEVDMNVIMTGAHQFVELQGTGEEATFSREQLNQLLDLAEHGIDELISHQKAALGE 239
>gi|269955862|ref|YP_003325651.1| ribonuclease PH [Xylanimonas cellulosilytica DSM 15894]
gi|269304543|gb|ACZ30093.1| ribonuclease PH [Xylanimonas cellulosilytica DSM 15894]
Length = 262
Score = 175 bits (444), Expect = 4e-42, Method: Composition-based stats.
Identities = 113/240 (47%), Positives = 155/240 (64%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R GR +++R + +TR AEGS LV+FG T +L A+ E VP W + + GW+TA
Sbjct: 20 RADGRAPDELRAVKITRGWLDAAEGSVLVEFGGTRVLCAASFTEGVPRWKKGSGEGWVTA 79
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
EY MLPR+T R RE+V GR GGR+ EI R+IGR+LR+++D+SALG I++DCDV+QA
Sbjct: 80 EYAMLPRATNTRSDRESVKGRVGGRTHEISRLIGRSLRAIIDVSALGENTIVLDCDVLQA 139
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
DGGTRTAAITGA+VAL D + + +VL V+A+S G++ G P++DL Y E
Sbjct: 140 DGGTRTAAITGAYVALADAVAWGRRHGHIKGGKEVLTDSVSAVSVGIVDGVPMLDLPYVE 199
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
D D N V+T SG VEVQG+AE F + A+L+LA A L +LQ+ ++ E
Sbjct: 200 DVRAGTDMNVVVTGSGTFVEVQGTAEHGAFDRAELDALLDLAVAGNARLAELQRAALAEE 259
>gi|34499302|ref|NP_903517.1| tRNA nucleotidyltransferase [Chromobacterium violaceum ATCC 12472]
gi|61215999|sp|Q7MBD4|RNPH_CHRVO RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|34105153|gb|AAQ61509.1| tRNA nucleotidyltransferase [Chromobacterium violaceum ATCC 12472]
Length = 238
Score = 175 bits (444), Expect = 4e-42, Method: Composition-based stats.
Identities = 129/239 (53%), Positives = 175/239 (73%), Gaps = 2/239 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR S R + MR + LTR +K+AEGS LV+FGDT ++ TA++EE VP +++ GW+T
Sbjct: 1 MRPSQRSADAMRVVRLTRSYTKHAEGSVLVEFGDTKVICTASVEETVPSFLKGKGQGWVT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPRSTG+R++RE+ +G+Q GR+QEIQR+IGR+LR+V DL+ LG RQI+IDCDVIQ
Sbjct: 61 AEYGMLPRSTGSRMRRESAAGKQSGRTQEIQRLIGRSLRAVTDLAKLGERQIVIDCDVIQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+ITGA+VAL D ++ + D + L+ VAA+S G+ G P++DLDY
Sbjct: 121 ADGGTRTASITGAYVALADAIRGLIDA--GKLSATPLRDQVAAVSVGVYKGQPVLDLDYL 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
EDS + D N VMT SG VEVQG+AE FS++ AML LA+ IA+L+ Q+ ++
Sbjct: 179 EDSDCETDMNVVMTGSGRFVEVQGTAEGEPFSEEEMAAMLGLARKGIAELLAHQRQALN 237
>gi|56476728|ref|YP_158317.1| ribonuclease PH [Aromatoleum aromaticum EbN1]
gi|81598865|sp|Q5P5J6|RNPH_AZOSE RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|56312771|emb|CAI07416.1| Ribonuclease PH [Aromatoleum aromaticum EbN1]
Length = 239
Score = 175 bits (444), Expect = 4e-42, Method: Composition-based stats.
Identities = 131/238 (55%), Positives = 168/238 (70%), Gaps = 2/238 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR S R+ +Q+R + +TR + +AEGS LV+FG T +L TA++E+ VP ++R GW+T
Sbjct: 1 MRPSQRRPDQLRAVMITRNFTCHAEGSVLVEFGATRVLCTASVEDTVPPFLRGRGQGWLT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPR+T R REA G+Q GR+QEIQR+IGR+LR+VVDLSALG RQI+IDCDV+Q
Sbjct: 61 AEYGMLPRATHTRSAREAAKGKQSGRTQEIQRLIGRSLRAVVDLSALGERQIVIDCDVLQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTAAITGA VA+HD + + L+ VAA+S GM G P++DLDY
Sbjct: 121 ADGGTRTAAITGACVAVHDAFRKLVTE--GKLPYSPLREFVAAVSVGMFQGVPVLDLDYA 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
EDS D D N VMT +G VEVQG+AE ATFS+ A+L LA+ I L++ QK I
Sbjct: 179 EDSGCDTDMNVVMTGAGGFVEVQGTAEGATFSRAELNALLELAESGIRRLVEAQKAAI 236
>gi|227552907|ref|ZP_03982956.1| tRNA nucleotidyltransferase [Enterococcus faecalis HH22]
gi|227177961|gb|EEI58933.1| tRNA nucleotidyltransferase [Enterococcus faecalis HH22]
Length = 316
Score = 175 bits (444), Expect = 4e-42, Method: Composition-based stats.
Identities = 119/247 (48%), Positives = 158/247 (63%), Gaps = 7/247 (2%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+R R ++R+I++ V K+ EGS ++ FGDT ++ +AT+EEKVP ++R GW+
Sbjct: 2 IRHDSRAPKELRKITIETNVFKHPEGSVVISFGDTKVICSATVEEKVPPFLRGGGTGWVA 61
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEY MLPR+T R RE+ G+ GR+ EIQR+IGR+LR+VVDL LG R I++DCDVIQ
Sbjct: 62 AEYSMLPRATNTRNIRESAKGKLTGRTMEIQRLIGRSLRAVVDLEKLGERSIVVDCDVIQ 121
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPI-VDLDY 179
ADGGTRTA+ITGA+VAL + +K H+AA+S G+L +DLDY
Sbjct: 122 ADGGTRTASITGAFVALRLAVN--HLLMTGALAEDPIKEHLAAVSVGILPDGYCVLDLDY 179
Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI- 238
EDS VD N VMT+SG VE+QG+ E ATFS D AML K I +LI QK+ +
Sbjct: 180 AEDSNAAVDMNIVMTESGEFVEIQGTGEEATFSGDELNAMLFYGKTGIEELIAYQKEALY 239
Query: 239 ---SNEV 242
S EV
Sbjct: 240 ALASEEV 246
>gi|314982113|gb|EFT26206.1| ribonuclease PH [Propionibacterium acnes HL110PA3]
gi|315090352|gb|EFT62328.1| ribonuclease PH [Propionibacterium acnes HL110PA4]
Length = 254
Score = 175 bits (444), Expect = 4e-42, Method: Composition-based stats.
Identities = 108/238 (45%), Positives = 154/238 (64%), Gaps = 2/238 (0%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R+ GR+ +Q+R++ + AEGS LV FG T +L A++ E VP W + + GW+TA
Sbjct: 16 RIDGRRLDQLRDVRIECGWLSQAEGSVLVSFGRTTVLCNASVTEGVPRWRKGSGLGWVTA 75
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
EY MLPR+T R RE+ G+ GGR+ EI R++GR+LR+VVD ALG II+DCDV+QA
Sbjct: 76 EYEMLPRATNERSGRESRKGKVGGRTHEISRLVGRSLRAVVDDKALGENTIILDCDVLQA 135
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
DGGTRTA+ITGA+VAL D + + +S+ + G V AIS G++ G P++DL Y E
Sbjct: 136 DGGTRTASITGAYVALIDAVNWLR--GRGGLVSEPIIGSVQAISVGVVDGIPMLDLAYEE 193
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
DS D D N VM+ +G VE+QG+AE F+++ +L+LA A L + Q + +
Sbjct: 194 DSRADTDMNVVMSGNGDFVEIQGTAEGTPFNRNLLNELLDLAAGGCATLKQAQSEALG 251
>gi|254369050|ref|ZP_04985063.1| ribonuclease PH [Francisella tularensis subsp. holarctica FSC022]
gi|157121971|gb|EDO66141.1| ribonuclease PH [Francisella tularensis subsp. holarctica FSC022]
Length = 235
Score = 175 bits (444), Expect = 4e-42, Method: Composition-based stats.
Identities = 115/232 (49%), Positives = 161/232 (69%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR SGR +Q+R + +T +K+AEGS L++FGDT ++ TA++ VP + +++ GW+
Sbjct: 1 MRPSGRNNDQLRNLKVTHNFTKHAEGSVLIEFGDTKVICTASVVAGVPKFKKDSGEGWLI 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPRST R+ REA G+Q GR+QEIQR+IGRALR+ VDL+A+G I +DCDVIQ
Sbjct: 61 AEYGMLPRSTHMRMDREAARGKQSGRTQEIQRLIGRALRASVDLTAIGENTIKVDCDVIQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+ITGA +A+ D +++M+ + + L VAAIS G+ P++DLDY
Sbjct: 121 ADGGTRTASITGASLAIADAIEYMKQNGILDEQANPLLSQVAAISVGIYNNEPVLDLDYD 180
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
EDS + D N VM +G I+E+QG+AE FS++ F ML LAK I ++
Sbjct: 181 EDSNAETDMNVVMNSNGGIIEIQGTAEGKDFSEEEFAKMLGLAKKGIKEIFA 232
>gi|290477306|ref|YP_003470227.1| RNase PH [Xenorhabdus bovienii SS-2004]
gi|289176660|emb|CBJ83469.1| RNase PH [Xenorhabdus bovienii SS-2004]
Length = 242
Score = 175 bits (443), Expect = 4e-42, Method: Composition-based stats.
Identities = 116/238 (48%), Positives = 158/238 (66%), Gaps = 2/238 (0%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R +GR Q+R I +TR +K+AEGS LV+FGDT +L A++EE +P +++ GWITA
Sbjct: 7 RPAGRTAGQVRPIKMTRHYTKHAEGSVLVEFGDTKVLCNASVEEGIPRFLKGQGQGWITA 66
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
EYGMLPR+T +R REA G+Q GR+ EIQR+I R+LR+ VDL LG I +DCDVIQA
Sbjct: 67 EYGMLPRATNSRNAREAARGKQTGRTMEIQRLIARSLRAAVDLKKLGEYTITLDCDVIQA 126
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
DGGTRTAAI+GA VAL D L + + +K VAA+S G++ G + DL+Y E
Sbjct: 127 DGGTRTAAISGACVALVDALNKLVADGKLKKS--PMKSMVAAVSVGIVEGEGLCDLEYVE 184
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
DS + D N VM D G ++EVQG+AE FS D ++L+LAK+ + + Q+D +
Sbjct: 185 DSAAETDMNIVMMDDGRMIEVQGTAEGEPFSHDELLSLLSLAKEGLETIFAAQRDALK 242
>gi|73748973|ref|YP_308212.1| ribonuclease PH [Dehalococcoides sp. CBDB1]
gi|147669740|ref|YP_001214558.1| ribonuclease PH [Dehalococcoides sp. BAV1]
gi|289432969|ref|YP_003462842.1| ribonuclease PH [Dehalococcoides sp. GT]
gi|123619918|sp|Q3ZYH8|RNPH_DEHSC RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|189043760|sp|A5FQ49|RNPH_DEHSB RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|73660689|emb|CAI83296.1| ribonuclease PH [Dehalococcoides sp. CBDB1]
gi|146270688|gb|ABQ17680.1| RNAse PH [Dehalococcoides sp. BAV1]
gi|288946689|gb|ADC74386.1| ribonuclease PH [Dehalococcoides sp. GT]
Length = 241
Score = 175 bits (443), Expect = 4e-42, Method: Composition-based stats.
Identities = 107/234 (45%), Positives = 151/234 (64%), Gaps = 2/234 (0%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R GR NQ+R I++T +AEGS L++ G T ++ + ++E++VP ++RN+ GW+TA
Sbjct: 3 RGDGRNFNQLRPITITPGFQSFAEGSVLIEQGKTRVICSVSMEDRVPQFLRNSGTGWVTA 62
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
EY MLPRST R +R++ +G+ GRSQEIQR+IGR+LRS VD++ALG R I+DCDVIQA
Sbjct: 63 EYSMLPRSTVTRTQRDSSAGKISGRSQEIQRLIGRSLRSCVDMAALGERSFIVDCDVIQA 122
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
D GTRTA+ITG+++AL+ + M D VAA+S + G ++D Y E
Sbjct: 123 DAGTRTASITGSYIALYLAFKKMVD--MGILSKMPFTSQVAAVSVSIFKGNIVLDPCYDE 180
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
D +VD N VM D G VE+QG+AE FS+D +L L + I L +QK
Sbjct: 181 DFQAEVDFNLVMNDRGEFVEIQGTAEGKAFSRDTLDQVLKLGEAGIRQLFDIQK 234
>gi|223365844|pdb|3DD6|A Chain A, Crystal Structure Of Rph, An Exoribonuclease From Bacillus
Anthracis At 1.7 A Resolution
Length = 255
Score = 175 bits (443), Expect = 4e-42, Method: Composition-based stats.
Identities = 112/243 (46%), Positives = 161/243 (66%), Gaps = 3/243 (1%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR+ GR++ ++R I + K+ EGS L++ GDT ++ +AT+EE+VP ++R GW+T
Sbjct: 11 MRVDGREKTELRHIHIHTNYLKHPEGSVLIEVGDTKVICSATIEERVPPFMRGEGKGWVT 70
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEY M+PR+T R RE+ G+ GR+ EIQR+IGRALR+VVDL ALG R + IDCDVIQ
Sbjct: 71 AEYAMIPRATEQRTIRESSKGKVTGRTMEIQRLIGRALRAVVDLEALGERTVWIDCDVIQ 130
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY-PIVDLDY 179
ADGGTRTA+ITGA+VA+ + + + +K ++AA S G++ ++DL+Y
Sbjct: 131 ADGGTRTASITGAYVAMVLAFEKL--LQAEKVSKIPVKDYLAATSVGIVEEQGVVLDLNY 188
Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
EDS DVD N +MT G VEVQG+ E ATFS+ +L+ A+ I LI +QK+ +
Sbjct: 189 AEDSKADVDMNVIMTGKGQFVEVQGTGEEATFSRAQLNELLDAAEQGIFQLIDIQKEALG 248
Query: 240 NEV 242
+ V
Sbjct: 249 DIV 251
>gi|30264550|ref|NP_846927.1| ribonuclease PH [Bacillus anthracis str. Ames]
gi|47530015|ref|YP_021364.1| ribonuclease PH [Bacillus anthracis str. 'Ames Ancestor']
gi|49187372|ref|YP_030624.1| ribonuclease PH [Bacillus anthracis str. Sterne]
gi|49481507|ref|YP_038534.1| ribonuclease PH [Bacillus thuringiensis serovar konkukian str.
97-27]
gi|52141017|ref|YP_085813.1| ribonuclease PH [Bacillus cereus E33L]
gi|162382773|ref|YP_896797.2| ribonuclease PH [Bacillus thuringiensis str. Al Hakam]
gi|165871495|ref|ZP_02216142.1| ribonuclease PH [Bacillus anthracis str. A0488]
gi|167635642|ref|ZP_02393954.1| ribonuclease PH [Bacillus anthracis str. A0442]
gi|167641666|ref|ZP_02399911.1| ribonuclease PH [Bacillus anthracis str. A0193]
gi|170688310|ref|ZP_02879520.1| ribonuclease PH [Bacillus anthracis str. A0465]
gi|170708334|ref|ZP_02898778.1| ribonuclease PH [Bacillus anthracis str. A0389]
gi|177653076|ref|ZP_02935363.1| ribonuclease PH [Bacillus anthracis str. A0174]
gi|190566932|ref|ZP_03019848.1| ribonuclease PH [Bacillus anthracis Tsiankovskii-I]
gi|196034453|ref|ZP_03101862.1| ribonuclease PH [Bacillus cereus W]
gi|196039169|ref|ZP_03106475.1| tRNA nucleotidyltransferase [Bacillus cereus NVH0597-99]
gi|196044912|ref|ZP_03112146.1| ribonuclease PH [Bacillus cereus 03BB108]
gi|218905683|ref|YP_002453517.1| ribonuclease PH [Bacillus cereus AH820]
gi|225866464|ref|YP_002751842.1| ribonuclease PH [Bacillus cereus 03BB102]
gi|227817261|ref|YP_002817270.1| ribonuclease PH [Bacillus anthracis str. CDC 684]
gi|228929528|ref|ZP_04092547.1| Ribonuclease PH [Bacillus thuringiensis serovar pondicheriensis
BGSC 4BA1]
gi|228935800|ref|ZP_04098612.1| Ribonuclease PH [Bacillus thuringiensis serovar andalousiensis BGSC
4AW1]
gi|228948205|ref|ZP_04110489.1| Ribonuclease PH [Bacillus thuringiensis serovar monterrey BGSC
4AJ1]
gi|229093577|ref|ZP_04224678.1| Ribonuclease PH [Bacillus cereus Rock3-42]
gi|229124021|ref|ZP_04253213.1| Ribonuclease PH [Bacillus cereus 95/8201]
gi|229186723|ref|ZP_04313881.1| Ribonuclease PH [Bacillus cereus BGSC 6E1]
gi|229601018|ref|YP_002868764.1| tRNA nucleotidyltransferase [Bacillus anthracis str. A0248]
gi|254687030|ref|ZP_05150888.1| ribonuclease PH [Bacillus anthracis str. CNEVA-9066]
gi|254724592|ref|ZP_05186375.1| ribonuclease PH [Bacillus anthracis str. A1055]
gi|254736584|ref|ZP_05194290.1| ribonuclease PH [Bacillus anthracis str. Western North America
USA6153]
gi|254741622|ref|ZP_05199309.1| ribonuclease PH [Bacillus anthracis str. Kruger B]
gi|254754780|ref|ZP_05206815.1| ribonuclease PH [Bacillus anthracis str. Vollum]
gi|254757612|ref|ZP_05209639.1| ribonuclease PH [Bacillus anthracis str. Australia 94]
gi|301055992|ref|YP_003794203.1| ribonuclease PH [Bacillus anthracis CI]
gi|61215848|sp|Q633V4|RNPH_BACCZ RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|61215928|sp|Q6HD42|RNPH_BACHK RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|61216034|sp|Q81LA9|RNPH_BACAN RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|226736884|sp|B7JQ74|RNPH_BACC0 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|254808577|sp|C3PA74|RNPH_BACAA RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|254808578|sp|C3L7T5|RNPH_BACAC RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|254808579|sp|C1ETS9|RNPH_BACC3 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|30259208|gb|AAP28413.1| tRNA nucleotidyltransferase [Bacillus anthracis str. Ames]
gi|47505163|gb|AAT33839.1| ribonuclease PH [Bacillus anthracis str. 'Ames Ancestor']
gi|49181299|gb|AAT56675.1| ribonuclease PH [Bacillus anthracis str. Sterne]
gi|49333063|gb|AAT63709.1| ribonuclease PH (RNase PH) (tRNA nucleotidyltransferase) [Bacillus
thuringiensis serovar konkukian str. 97-27]
gi|51974486|gb|AAU16036.1| ribonuclease PH (RNase PH) (tRNA nucleotidyltransferase) [Bacillus
cereus E33L]
gi|164712792|gb|EDR18322.1| ribonuclease PH [Bacillus anthracis str. A0488]
gi|167510373|gb|EDR85774.1| ribonuclease PH [Bacillus anthracis str. A0193]
gi|167529062|gb|EDR91817.1| ribonuclease PH [Bacillus anthracis str. A0442]
gi|170126709|gb|EDS95592.1| ribonuclease PH [Bacillus anthracis str. A0389]
gi|170667816|gb|EDT18569.1| ribonuclease PH [Bacillus anthracis str. A0465]
gi|172081600|gb|EDT66671.1| ribonuclease PH [Bacillus anthracis str. A0174]
gi|190561923|gb|EDV15892.1| ribonuclease PH [Bacillus anthracis Tsiankovskii-I]
gi|195992995|gb|EDX56954.1| ribonuclease PH [Bacillus cereus W]
gi|196024400|gb|EDX63073.1| ribonuclease PH [Bacillus cereus 03BB108]
gi|196029796|gb|EDX68397.1| tRNA nucleotidyltransferase [Bacillus cereus NVH0597-99]
gi|218536266|gb|ACK88664.1| ribonuclease PH [Bacillus cereus AH820]
gi|225790478|gb|ACO30695.1| tRNA nucleotidyltransferase [Bacillus cereus 03BB102]
gi|227004760|gb|ACP14503.1| tRNA nucleotidyltransferase [Bacillus anthracis str. CDC 684]
gi|228596736|gb|EEK54398.1| Ribonuclease PH [Bacillus cereus BGSC 6E1]
gi|228659323|gb|EEL14971.1| Ribonuclease PH [Bacillus cereus 95/8201]
gi|228689786|gb|EEL43592.1| Ribonuclease PH [Bacillus cereus Rock3-42]
gi|228811563|gb|EEM57900.1| Ribonuclease PH [Bacillus thuringiensis serovar monterrey BGSC
4AJ1]
gi|228823857|gb|EEM69677.1| Ribonuclease PH [Bacillus thuringiensis serovar andalousiensis BGSC
4AW1]
gi|228830107|gb|EEM75725.1| Ribonuclease PH [Bacillus thuringiensis serovar pondicheriensis
BGSC 4BA1]
gi|229265426|gb|ACQ47063.1| tRNA nucleotidyltransferase [Bacillus anthracis str. A0248]
gi|300378161|gb|ADK07065.1| ribonuclease PH [Bacillus cereus biovar anthracis str. CI]
Length = 245
Score = 175 bits (443), Expect = 5e-42, Method: Composition-based stats.
Identities = 112/243 (46%), Positives = 161/243 (66%), Gaps = 3/243 (1%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR+ GR++ ++R I + K+ EGS L++ GDT ++ +AT+EE+VP ++R GW+T
Sbjct: 1 MRVDGREKTELRHIHIHTNYLKHPEGSVLIEVGDTKVICSATIEERVPPFMRGEGKGWVT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEY M+PR+T R RE+ G+ GR+ EIQR+IGRALR+VVDL ALG R + IDCDVIQ
Sbjct: 61 AEYAMIPRATEQRTIRESSKGKVTGRTMEIQRLIGRALRAVVDLEALGERTVWIDCDVIQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY-PIVDLDY 179
ADGGTRTA+ITGA+VA+ + + + +K ++AA S G++ ++DL+Y
Sbjct: 121 ADGGTRTASITGAYVAMVLAFEKL--LQAEKVSKIPVKDYLAATSVGIVEEQGVVLDLNY 178
Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
EDS DVD N +MT G VEVQG+ E ATFS+ +L+ A+ I LI +QK+ +
Sbjct: 179 AEDSKADVDMNVIMTGKGQFVEVQGTGEEATFSRAQLNELLDAAEQGIFQLIDIQKEALG 238
Query: 240 NEV 242
+ V
Sbjct: 239 DIV 241
>gi|61215895|sp|Q6A759|RNPH_PROAC RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
Length = 244
Score = 175 bits (443), Expect = 5e-42, Method: Composition-based stats.
Identities = 109/238 (45%), Positives = 155/238 (65%), Gaps = 2/238 (0%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R+ GR+ +Q+R++ + R AEGS LV FG T +L A++ E VP W + + GW+TA
Sbjct: 6 RIDGRRLDQLRDVRIERGWLSQAEGSVLVSFGRTTVLCNASVTEGVPRWRKGSGLGWVTA 65
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
EY MLPR+T R RE+ G+ GGR+ EI R++GR+LR+VVD ALG II+DCDV+QA
Sbjct: 66 EYEMLPRATNERSGRESRKGKVGGRTHEISRLVGRSLRAVVDDKALGENTIILDCDVLQA 125
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
DGGTRTA+ITGA+VAL D + + +S+ + G V AIS G++ G P++DL Y E
Sbjct: 126 DGGTRTASITGAYVALIDAVNWLR--GRGGLVSEPIIGSVQAISVGVVDGIPMLDLAYKE 183
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
DS D D N VM+ +G VE+QG+AE F+++ +L+LA A L + Q + +
Sbjct: 184 DSRADTDMNVVMSGNGDFVEIQGTAEGTPFNRNLLNELLDLAAGGCATLKQAQSEALG 241
>gi|228917119|ref|ZP_04080677.1| Ribonuclease PH [Bacillus thuringiensis serovar pulsiensis BGSC
4CC1]
gi|228842537|gb|EEM87627.1| Ribonuclease PH [Bacillus thuringiensis serovar pulsiensis BGSC
4CC1]
Length = 245
Score = 175 bits (443), Expect = 5e-42, Method: Composition-based stats.
Identities = 112/243 (46%), Positives = 160/243 (65%), Gaps = 3/243 (1%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR+ GR++ ++R I + K+ EGS L++ GDT ++ +AT+EE+VP ++R GW+T
Sbjct: 1 MRVDGREKTELRHIHIHTNYLKHPEGSVLIEVGDTKVICSATIEERVPPFMRGEGKGWVT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEY M+PR+T R RE+ G+ GR+ EIQR+IGRALR+VVDL ALG R + IDCDVIQ
Sbjct: 61 AEYAMIPRATEQRTIRESSKGKVTGRTMEIQRLIGRALRAVVDLEALGERTVWIDCDVIQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY-PIVDLDY 179
ADGGTRTA+ITGA+VA+ + + +K ++AA S G++ ++DL+Y
Sbjct: 121 ADGGTRTASITGAYVAMVLAFEKLLRAE--KVSKIPVKDYLAATSVGIVEEQGVVLDLNY 178
Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
EDS DVD N +MT G VEVQG+ E ATFS+ +L+ A+ I LI +QK+ +
Sbjct: 179 AEDSKADVDMNVIMTGKGQFVEVQGTGEEATFSRAQLNELLDAAEQGIFQLIDIQKEALG 238
Query: 240 NEV 242
+ V
Sbjct: 239 DIV 241
>gi|65321848|ref|ZP_00394807.1| COG0689: RNase PH [Bacillus anthracis str. A2012]
Length = 258
Score = 175 bits (443), Expect = 5e-42, Method: Composition-based stats.
Identities = 112/243 (46%), Positives = 161/243 (66%), Gaps = 3/243 (1%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR+ GR++ ++R I + K+ EGS L++ GDT ++ +AT+EE+VP ++R GW+T
Sbjct: 14 MRVDGREKTELRHIHIHTNYLKHPEGSVLIEVGDTKVICSATIEERVPPFMRGEGKGWVT 73
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEY M+PR+T R RE+ G+ GR+ EIQR+IGRALR+VVDL ALG R + IDCDVIQ
Sbjct: 74 AEYAMIPRATEQRTIRESSKGKVTGRTMEIQRLIGRALRAVVDLEALGERTVWIDCDVIQ 133
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY-PIVDLDY 179
ADGGTRTA+ITGA+VA+ + + + +K ++AA S G++ ++DL+Y
Sbjct: 134 ADGGTRTASITGAYVAMVLAFEKL--LQAEKVSKIPVKDYLAATSVGIVEEQGVVLDLNY 191
Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
EDS DVD N +MT G VEVQG+ E ATFS+ +L+ A+ I LI +QK+ +
Sbjct: 192 AEDSKADVDMNVIMTGKGQFVEVQGTGEEATFSRAQLNELLDAAEQGIFQLIDIQKEALG 251
Query: 240 NEV 242
+ V
Sbjct: 252 DIV 254
>gi|254784432|ref|YP_003071860.1| ribonuclease PH [Teredinibacter turnerae T7901]
gi|259494129|sp|C5BLF9|RNPH_TERTT RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|237687110|gb|ACR14374.1| tRNA nucleotidyltransferase [Teredinibacter turnerae T7901]
Length = 239
Score = 175 bits (443), Expect = 5e-42, Method: Composition-based stats.
Identities = 130/240 (54%), Positives = 176/240 (73%), Gaps = 2/240 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+R SGR NQ+R+IS+TR +++AEGS LV FGDT ++ TAT+EE VP +++ GW+T
Sbjct: 2 LRPSGRAANQLRDISITRHYTRHAEGSVLVCFGDTKVICTATVEEGVPRFLKGEGQGWVT 61
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPRSTG+R+ REA G+QGGR+ EIQR+IGR+LR+ VDL+ LG I IDCDVIQ
Sbjct: 62 AEYGMLPRSTGSRMGREAARGKQGGRTVEIQRLIGRSLRAAVDLTLLGEHSITIDCDVIQ 121
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+ITGA VAL D L+ M+ K + L+ VA++S GM G ++DLDY
Sbjct: 122 ADGGTRTASITGACVALVDALRFMQRS--KMIQTDPLRHLVASVSVGMYQGEAVLDLDYP 179
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
EDS D D N VMT+ G ++E+QG+AE+A FS+D F M LAK+ I++L + Q+ +++
Sbjct: 180 EDSNADTDMNMVMTEQGGLIEIQGTAEQAPFSEDEFIQMFTLAKEGISELCEFQRQSLTD 239
>gi|91787235|ref|YP_548187.1| ribonuclease PH [Polaromonas sp. JS666]
gi|91696460|gb|ABE43289.1| RNAse PH [Polaromonas sp. JS666]
Length = 243
Score = 175 bits (443), Expect = 5e-42, Method: Composition-based stats.
Identities = 125/241 (51%), Positives = 167/241 (69%), Gaps = 2/241 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+R+ R + +R + +TR + YAEGS L++FG T +L TA++EEKVP + + GW+T
Sbjct: 5 VRVDARAADALRPVRITRHYTAYAEGSVLIEFGGTKVLCTASVEEKVPGHKKGSGEGWVT 64
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPR+T R REA G+Q GR+QEIQR+IGR++RSV DL LG R I +DCDVIQ
Sbjct: 65 AEYGMLPRATHTRSDREAARGKQSGRTQEIQRLIGRSMRSVFDLKKLGERTIYLDCDVIQ 124
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+ITGA+VA+ D + + + HVAAIS G++ G P++DL+Y
Sbjct: 125 ADGGTRTASITGAFVAVQDAVNQLLAL--GKLQETPILDHVAAISVGIVQGTPLLDLEYT 182
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
EDS D D N VMT +G+ VEVQG+AE A FS+ A+L LA+ IA+L+ LQK +SN
Sbjct: 183 EDSACDTDMNVVMTGAGNYVEVQGTAEGAAFSRKEMDALLVLAEKGIAELVGLQKKSLSN 242
Query: 241 E 241
E
Sbjct: 243 E 243
>gi|145296503|ref|YP_001139324.1| ribonuclease PH [Corynebacterium glutamicum R]
gi|166228277|sp|A4QGQ6|RNPH_CORGB RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|140846423|dbj|BAF55422.1| hypothetical protein [Corynebacterium glutamicum R]
Length = 245
Score = 175 bits (443), Expect = 5e-42, Method: Composition-based stats.
Identities = 107/238 (44%), Positives = 149/238 (62%), Gaps = 2/238 (0%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R GR ++QMR + +TR + GS LV+FG+T ++ TA++E VP + R++ GW+TA
Sbjct: 9 RFDGRAQDQMRAVKITRGFTSNPAGSVLVEFGNTRVMCTASVELGVPRFKRDSGEGWLTA 68
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
EY MLP +T R +RE+++G+ GR+ EI R+IGR+LR+ VDLS LG I IDCDV+QA
Sbjct: 69 EYAMLPAATAERNRRESMAGKVKGRTHEISRLIGRSLRAAVDLSQLGENTIAIDCDVLQA 128
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
DGGTRTA+ITGA+VAL L VAA+S G++ G +DL Y E
Sbjct: 129 DGGTRTASITGAYVAL--ADAIKVLQERGVVPGSPLLAPVAAVSVGLVDGNVCLDLPYEE 186
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
DS DVD N VMT+ G VE+QG+ E TF++ ML+ A+ +L+ QK +
Sbjct: 187 DSRADVDLNVVMTEHGEFVEIQGTGEETTFTRAQLNDMLDYAEKGCRELVAAQKAALG 244
>gi|171057396|ref|YP_001789745.1| ribonuclease PH [Leptothrix cholodnii SP-6]
gi|170774841|gb|ACB32980.1| ribonuclease PH [Leptothrix cholodnii SP-6]
Length = 241
Score = 175 bits (443), Expect = 5e-42, Method: Composition-based stats.
Identities = 121/238 (50%), Positives = 162/238 (68%), Gaps = 2/238 (0%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R GR + +R + +TR +K+AEGS L++FGDT +L TA++EEKVP + + GW+TA
Sbjct: 5 RPLGRAADALRPVRITRSYTKHAEGSVLIEFGDTQVLCTASVEEKVPPHKKGSGEGWVTA 64
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
EYGMLPR+T R REA G+Q GR+QEIQR+IGR+LR V DL+ALG R I+IDCDV+QA
Sbjct: 65 EYGMLPRATHTRSAREAAKGKQSGRTQEIQRLIGRSLRCVFDLAALGERSILIDCDVLQA 124
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
DGGTRTA+ITGA+VA HD +Q + + ++ VAA+S G+L G ++DL+Y E
Sbjct: 125 DGGTRTASITGAFVAAHDAVQGLIAQGKLKRS--PIRDFVAAVSVGILDGVALLDLEYVE 182
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
DS D D N VMT +G VEVQG+AE FS+ +L L IA+L+ QK +
Sbjct: 183 DSACDTDMNIVMTGAGGFVEVQGTAEGVAFSRAEMDQLLALGSAGIAELVAAQKAALG 240
>gi|1079663|gb|AAC44429.1| RNase PH [Pseudomonas aeruginosa PAO1]
Length = 239
Score = 175 bits (443), Expect = 5e-42, Method: Composition-based stats.
Identities = 118/239 (49%), Positives = 158/239 (66%), Gaps = 2/239 (0%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R SGR +Q+R I +TR +K+AEGS LV+FGDT ++ T + E VP +++ GW+TA
Sbjct: 3 RPSGRAADQLRPIRITRHYTKHAEGSVLVEFGDTKVICTVSAESGVPRFLKGQGQGWLTA 62
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
EYGML RSTG R +REA G+QGGR+ EIQR+I R+LR+ +DLS LG + IDCDVIQ
Sbjct: 63 EYGMLRRSTGERNQREASRGKQGGRTLEIQRLIDRSLRAALDLSKLGENTLYIDCDVIQT 122
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
DGGTRTA+ITGA V+L D L ++ LK VAA+S G+ G P++DLDY E
Sbjct: 123 DGGTRTASITGATVSLIDALAVLKKRV--ALKGNPLKQIVAAVSVGIYQGVPVLDLDYLE 180
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
DS + D N VMTD +EVQG+AE A F AML LA+ + +L++ Q+ ++
Sbjct: 181 DSAAESDLNVVMTDCRRFIEVQGTAEGAPFRPAELNAMLELAQQGMQELVRTQRAALAE 239
>gi|260913198|ref|ZP_05919680.1| tRNA nucleotidyltransferase [Pasteurella dagmatis ATCC 43325]
gi|260632785|gb|EEX50954.1| tRNA nucleotidyltransferase [Pasteurella dagmatis ATCC 43325]
Length = 238
Score = 175 bits (443), Expect = 5e-42, Method: Composition-based stats.
Identities = 119/239 (49%), Positives = 164/239 (68%), Gaps = 2/239 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR + R +Q R+I +TR +K+AEGS LV+FGDT +L TAT+EE VP +++ GW+T
Sbjct: 1 MRPNERANHQPRQIKITRNYTKHAEGSVLVEFGDTKVLCTATVEESVPRFLKGQNQGWVT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPRST +R++REA G+QGGR+ EIQR+I R+LR++VDL ALG R + +DCDVIQ
Sbjct: 61 AEYGMLPRSTHSRMQREAAKGKQGGRTMEIQRLIARSLRAMVDLEALGERSVTLDCDVIQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+ITGA VAL D + + + +KG VAAIS G++ G + DL+Y
Sbjct: 121 ADGGTRTASITGACVALCDAINGLVAN--GTLKTNPIKGLVAAISVGIVDGQAVCDLEYV 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
EDS + D N VM + G ++EVQG+AE F+ D +L+LAK + Q+ ++
Sbjct: 179 EDSAAETDMNVVMMEDGRMIEVQGTAEGEPFNHDELLTLLDLAKQGCETIFVAQRQALA 237
>gi|85374029|ref|YP_458091.1| ribonuclease PH [Erythrobacter litoralis HTCC2594]
gi|122544511|sp|Q2NAJ7|RNPH_ERYLH RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|84787112|gb|ABC63294.1| RNase PH [Erythrobacter litoralis HTCC2594]
Length = 237
Score = 175 bits (443), Expect = 5e-42, Method: Composition-based stats.
Identities = 120/237 (50%), Positives = 162/237 (68%), Gaps = 2/237 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR SGR ++MR I++ +K+AEGSCL+ FGDT +L TA++EE++P W+R GW+T
Sbjct: 1 MRPSGRAPDEMRAITIETGYTKHAEGSCLIGFGDTKVLCTASVEERLPPWLRGKGQGWVT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
EY MLPR+T R REA G+Q GR+QEIQR+IGR+LR+VVDL LG RQI +DCDVIQ
Sbjct: 61 GEYSMLPRATHTRGNREAARGKQSGRTQEIQRLIGRSLRAVVDLEKLGERQITLDCDVIQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+I+GAW+AL + + + + G +AAISCG+ G P++DLDY
Sbjct: 121 ADGGTRTASISGAWIALRLAVSGLME--QGQIKDDPITGKIAAISCGIYNGTPVLDLDYA 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
EDS D DANFV+ + G I E Q +AE AT+ ++ +L LA+ A + K Q +
Sbjct: 179 EDSNADADANFVLIEGGKIAEAQATAEGATYDEEGLMRLLRLAQIGCAQIFKSQDEA 235
>gi|302037201|ref|YP_003797523.1| ribonuclease PH [Candidatus Nitrospira defluvii]
gi|300605265|emb|CBK41598.1| Ribonuclease PH [Candidatus Nitrospira defluvii]
Length = 247
Score = 175 bits (443), Expect = 5e-42, Method: Composition-based stats.
Identities = 116/239 (48%), Positives = 163/239 (68%), Gaps = 2/239 (0%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R+ GR+ +Q+R + +TR +K+AEGS L++ GDT ++ TA++EEKVP +++ GW+TA
Sbjct: 9 RIDGRRRDQIRPVKVTRNFTKHAEGSVLIEMGDTKVICTASIEEKVPPFLKGKGAGWVTA 68
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
EY MLPR+T +R RE+V G+QGGR+ EIQR++GRALR+V+D LG R I IDCDVIQA
Sbjct: 69 EYAMLPRATHDRSPRESVKGKQGGRTLEIQRLVGRALRAVIDTGRLGERTIWIDCDVIQA 128
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
DGGTRTA+ITG+++AL D + L ++AAIS G + G +VDL Y E
Sbjct: 129 DGGTRTASITGSFIALADAV--GVLRKKDLIKVNPLTDYLAAISIGKVGGQVMVDLAYEE 186
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
DS +VD N VMT +G VEVQG+AE+ F++ L+L I +L+ LQK +I +
Sbjct: 187 DSHAEVDLNLVMTGAGQYVEVQGTAEKTPFNKKDMDEFLDLGWGAIRELVDLQKSLIGS 245
>gi|296328289|ref|ZP_06870818.1| ribonuclease PH/Ham1 protein [Fusobacterium nucleatum subsp.
nucleatum ATCC 23726]
gi|296154593|gb|EFG95381.1| ribonuclease PH/Ham1 protein [Fusobacterium nucleatum subsp.
nucleatum ATCC 23726]
Length = 434
Score = 175 bits (443), Expect = 5e-42, Method: Composition-based stats.
Identities = 109/241 (45%), Positives = 156/241 (64%), Gaps = 2/241 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+R GR N+ R+I +T+ V+ YAEGS L++ G+T ++ TA++ +KVP ++R T GW+T
Sbjct: 2 LREDGRNFNEERKIKITKNVNIYAEGSVLIEVGNTKVICTASVSDKVPSFLRGTGKGWVT 61
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEY MLPR+T R REA G+ GR+ EIQR+IGRALR+ +DL LG R I IDCDVIQ
Sbjct: 62 AEYSMLPRATNERNPREASKGKLTGRTVEIQRLIGRALRASIDLEKLGERLITIDCDVIQ 121
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRT +ITG ++AL ++ + + + VAAIS G + +VDL Y
Sbjct: 122 ADGGTRTTSITGGYIALALAIKKLLQEEILEEDPLISN--VAAISVGKINSNLMVDLKYS 179
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
ED +VD N +M +EVQG+ E +TF++ +L+LA++ I LI+LQ +I+
Sbjct: 180 EDFAAEVDMNVIMNKKDEFIEVQGTGEESTFTRAELNQLLDLAENSIKRLIELQDRIINQ 239
Query: 241 E 241
E
Sbjct: 240 E 240
>gi|75760745|ref|ZP_00740767.1| Ribonuclease PH [Bacillus thuringiensis serovar israelensis ATCC
35646]
gi|218899648|ref|YP_002448059.1| ribonuclease PH [Bacillus cereus G9842]
gi|228903010|ref|ZP_04067149.1| Ribonuclease PH [Bacillus thuringiensis IBL 4222]
gi|228967584|ref|ZP_04128608.1| Ribonuclease PH [Bacillus thuringiensis serovar sotto str. T04001]
gi|226736885|sp|B7IIZ1|RNPH_BACC2 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|74491773|gb|EAO54967.1| Ribonuclease PH [Bacillus thuringiensis serovar israelensis ATCC
35646]
gi|218545068|gb|ACK97462.1| ribonuclease PH [Bacillus cereus G9842]
gi|228792108|gb|EEM39686.1| Ribonuclease PH [Bacillus thuringiensis serovar sotto str. T04001]
gi|228856603|gb|EEN01124.1| Ribonuclease PH [Bacillus thuringiensis IBL 4222]
Length = 245
Score = 175 bits (443), Expect = 5e-42, Method: Composition-based stats.
Identities = 112/243 (46%), Positives = 161/243 (66%), Gaps = 3/243 (1%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR+ GR++ ++R I + K+ EGS L++ GDT ++ +AT+EE+VP ++R GW+T
Sbjct: 1 MRVDGREKTELRHIHIHTNYLKHPEGSVLIEVGDTKVICSATIEERVPPFMRGEGKGWVT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEY M+PR+T R RE+ G+ GR+ EIQR+IGRALR+VVDL ALG R + IDCDVIQ
Sbjct: 61 AEYAMIPRATEQRTIRESSKGKVTGRTMEIQRLIGRALRAVVDLEALGERTVWIDCDVIQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY-PIVDLDY 179
ADGGTRTA+ITGA+VA+ + + + +K ++AA S G++ ++DL+Y
Sbjct: 121 ADGGTRTASITGAYVAMVLAFEKL--LQAEKVSKIPVKDYLAATSVGIVEEQGVVLDLNY 178
Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
EDS DVD N +MT G VEVQG+ E ATFS+ +L+ A+ I LI +QK+ +
Sbjct: 179 AEDSKADVDMNVIMTGKGQFVEVQGTGEEATFSRAQLNELLDAAEKGIFQLIDMQKEALG 238
Query: 240 NEV 242
+ V
Sbjct: 239 DIV 241
>gi|229019707|ref|ZP_04176514.1| Ribonuclease PH [Bacillus cereus AH1273]
gi|229027352|ref|ZP_04183607.1| Ribonuclease PH [Bacillus cereus AH1272]
gi|228733960|gb|EEL84699.1| Ribonuclease PH [Bacillus cereus AH1272]
gi|228741614|gb|EEL91807.1| Ribonuclease PH [Bacillus cereus AH1273]
Length = 245
Score = 175 bits (443), Expect = 5e-42, Method: Composition-based stats.
Identities = 109/242 (45%), Positives = 155/242 (64%), Gaps = 1/242 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR+ GR + ++R I + K+ EGS L++ GDT ++ +AT+EE+VP ++R GW+T
Sbjct: 1 MRVDGRGQAELRHIHIHTNYLKHPEGSVLIEVGDTKVICSATIEERVPPFMRGEGKGWVT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEY M+PR+T R RE+ G+ GR+ EIQR+IGRALR+VVDL ALG R + IDCDVIQ
Sbjct: 61 AEYSMIPRATEQRTIRESSKGKVTGRTMEIQRLIGRALRAVVDLEALGERTVWIDCDVIQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+ITGA+VA+ + + ++K V A + ++DL+Y
Sbjct: 121 ADGGTRTASITGAYVAMVLAFEKLL-QADKVSKIPVKDYLAATSVGVVEEQGVVLDLNYA 179
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
EDS DVD N +MT G VEVQG+ E ATFS+ +L+ A+ I L++ QK+ + +
Sbjct: 180 EDSKADVDMNVIMTGKGQFVEVQGTGEEATFSRAELNELLDAAEQGIFQLVEKQKEALGD 239
Query: 241 EV 242
V
Sbjct: 240 IV 241
>gi|161170278|gb|ABX59248.1| RNase PH [uncultured marine bacterium EB000_55B11]
gi|297183806|gb|ADI19929.1| hypothetical protein [uncultured marine bacterium EB000_55B11]
Length = 252
Score = 175 bits (443), Expect = 5e-42, Method: Composition-based stats.
Identities = 132/239 (55%), Positives = 170/239 (71%), Gaps = 2/239 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR SGR + MR I + +K+AEGSCL+K GDTH+L TA++ ++ P W+RNT GW+T
Sbjct: 16 MRPSGRAIDIMRPIEVEVGFTKHAEGSCLIKCGDTHVLCTASVXDRTPPWLRNTGMGWVT 75
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPRSTG+R +REA SG+Q GR+QEIQR+IGR+LR+ +D LG RQI +DCDV+Q
Sbjct: 76 AEYGMLPRSTGSRNRREAASGKQSGRTQEIQRLIGRSLRAGIDRLTLGERQITVDCDVLQ 135
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTR A+ITG W+AL + M L HVAA+SCG+ G PI+DLDY
Sbjct: 136 ADGGTRCASITGGWIALRLAINAMIKA--GDLKEDPLTEHVAAVSCGIYGGQPILDLDYA 193
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
EDS DANFVMT S +VE+QGSAE ATF + F ++++LA+ I++LI QK IS
Sbjct: 194 EDSEAGTDANFVMTGSNGLVEIQGSAEGATFDRTEFNSLMDLAEKGISELIIAQKAAIS 252
>gi|284799568|ref|ZP_05984302.2| tRNA nucleotidyltransferase [Neisseria subflava NJ9703]
gi|284797404|gb|EFC52751.1| tRNA nucleotidyltransferase [Neisseria subflava NJ9703]
Length = 277
Score = 175 bits (442), Expect = 6e-42, Method: Composition-based stats.
Identities = 116/234 (49%), Positives = 168/234 (71%), Gaps = 2/234 (0%)
Query: 5 GRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYG 64
GR + +R+I +T +A+GSCL++ G+T ++ TA+++E VP ++R + GW+TAEYG
Sbjct: 43 GRAADSLRDIKITPNFLPHADGSCLIECGNTKVICTASIDENVPPFLRGKEQGWVTAEYG 102
Query: 65 MLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGG 124
MLP ST +R++REA +G+Q GR+QEIQR+IGR+LR+VVD+ LG RQI+IDCDVIQADGG
Sbjct: 103 MLPASTASRMRREAAAGKQSGRTQEIQRLIGRSLRAVVDMEKLGERQILIDCDVIQADGG 162
Query: 125 TRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDST 184
TRTA+ITGA+VAL + + SN ++ VAA+S G++ G P++DLDY EDS
Sbjct: 163 TRTASITGAYVALQIAVDKL--LSNGLISENPIREAVAAVSAGVVGGVPLLDLDYPEDSG 220
Query: 185 IDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
D D N +MT SG I+E+QG+AE A FS + ++ LA IA+L++ Q+ +
Sbjct: 221 CDSDVNIIMTASGKIIEIQGTAEGAPFSIEELGKLIALAHKGIAELVQHQQAAL 274
>gi|118418871|gb|ABK87290.1| RNAse PH [Bacillus thuringiensis str. Al Hakam]
Length = 251
Score = 175 bits (442), Expect = 6e-42, Method: Composition-based stats.
Identities = 112/243 (46%), Positives = 161/243 (66%), Gaps = 3/243 (1%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR+ GR++ ++R I + K+ EGS L++ GDT ++ +AT+EE+VP ++R GW+T
Sbjct: 7 MRVDGREKTELRHIHIHTNYLKHPEGSVLIEVGDTKVICSATIEERVPPFMRGEGKGWVT 66
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEY M+PR+T R RE+ G+ GR+ EIQR+IGRALR+VVDL ALG R + IDCDVIQ
Sbjct: 67 AEYAMIPRATEQRTIRESSKGKVTGRTMEIQRLIGRALRAVVDLEALGERTVWIDCDVIQ 126
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY-PIVDLDY 179
ADGGTRTA+ITGA+VA+ + + + +K ++AA S G++ ++DL+Y
Sbjct: 127 ADGGTRTASITGAYVAMVLAFEKL--LQAEKVSKIPVKDYLAATSVGIVEEQGVVLDLNY 184
Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
EDS DVD N +MT G VEVQG+ E ATFS+ +L+ A+ I LI +QK+ +
Sbjct: 185 AEDSKADVDMNVIMTGKGQFVEVQGTGEEATFSRAQLNELLDAAEQGIFQLIDIQKEALG 244
Query: 240 NEV 242
+ V
Sbjct: 245 DIV 247
>gi|163942228|ref|YP_001647112.1| ribonuclease PH [Bacillus weihenstephanensis KBAB4]
gi|229013696|ref|ZP_04170825.1| Ribonuclease PH [Bacillus mycoides DSM 2048]
gi|229135326|ref|ZP_04264120.1| Ribonuclease PH [Bacillus cereus BDRD-ST196]
gi|229169222|ref|ZP_04296936.1| Ribonuclease PH [Bacillus cereus AH621]
gi|226736888|sp|A9VIV4|RNPH_BACWK RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|163864425|gb|ABY45484.1| ribonuclease PH [Bacillus weihenstephanensis KBAB4]
gi|228614288|gb|EEK71399.1| Ribonuclease PH [Bacillus cereus AH621]
gi|228648149|gb|EEL04190.1| Ribonuclease PH [Bacillus cereus BDRD-ST196]
gi|228747618|gb|EEL97492.1| Ribonuclease PH [Bacillus mycoides DSM 2048]
Length = 245
Score = 175 bits (442), Expect = 6e-42, Method: Composition-based stats.
Identities = 109/242 (45%), Positives = 154/242 (63%), Gaps = 1/242 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR+ GR + ++R I + K+ EGS L++ GDT ++ +AT+EE+VP ++R GW+T
Sbjct: 1 MRVDGRGKAELRHIHIHTNYLKHPEGSVLIEVGDTKVICSATIEERVPPFMRGEGKGWVT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEY M+PR+T R RE+ G+ GR+ EIQR+IGRALR+VVDL ALG R + IDCDVIQ
Sbjct: 61 AEYSMIPRATEQRTIRESSKGKVTGRTMEIQRLIGRALRAVVDLEALGERTVWIDCDVIQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+ITGA+VA+ + + + K V A + ++DL+Y
Sbjct: 121 ADGGTRTASITGAYVAMVLAFEKLL-QAEKVSKIPVKDYLAATSVGVVEEQGVVLDLNYA 179
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
EDS DVD N +MT G VEVQG+ E ATFS+ +L+ A+ I L++ QK+ + +
Sbjct: 180 EDSKADVDMNVIMTGKGQFVEVQGTGEEATFSRAELNELLDAAEQGIFQLVEKQKEALGD 239
Query: 241 EV 242
V
Sbjct: 240 IV 241
>gi|121997764|ref|YP_001002551.1| ribonuclease PH [Halorhodospira halophila SL1]
gi|166228286|sp|A1WVN7|RNPH_HALHL RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|121589169|gb|ABM61749.1| RNAse PH [Halorhodospira halophila SL1]
Length = 238
Score = 175 bits (442), Expect = 6e-42, Method: Composition-based stats.
Identities = 118/239 (49%), Positives = 166/239 (69%), Gaps = 2/239 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR SGR+ +++R IS+ R+ +K+AEGS L+ FGDT +L TA++E +VP W+R GW+T
Sbjct: 1 MRPSGRRADELRPISIQRQFTKHAEGSVLIGFGDTRVLCTASVEARVPPWLRGQGRGWVT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPRST R REA G+Q GR+ EIQR+IGR+LR+ VDL ALG R +++DCDV+Q
Sbjct: 61 AEYGMLPRSTHTRSDREAARGKQQGRTVEIQRLIGRSLRAAVDLQALGERSVVVDCDVLQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTAAITGA+VAL D L+ + + VA++S G+ G P++DLDY
Sbjct: 121 ADGGTRTAAITGAFVALTDALEGLVRQRALPASPLHGQ--VASVSVGVYRGEPVLDLDYA 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
ED + D N VM D+G +E+QG+AE F +D ML LA+ + +L++ Q++ ++
Sbjct: 179 EDGEAETDMNVVMNDAGAFIELQGTAEGHAFRRDELDRMLALAEKGVGELLQHQQEALA 237
>gi|172039437|ref|YP_001805938.1| ribonuclease PH [Cyanothece sp. ATCC 51142]
gi|254808585|sp|B1WUL8|RNPH_CYAA5 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|171700891|gb|ACB53872.1| ribonuclease PH [Cyanothece sp. ATCC 51142]
Length = 240
Score = 175 bits (442), Expect = 6e-42, Method: Composition-based stats.
Identities = 105/239 (43%), Positives = 151/239 (63%), Gaps = 4/239 (1%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R GRQ NQ+R ++ ++++ GS L + G+T +L TA++EE VP ++ + GW+TA
Sbjct: 5 RPDGRQPNQLRPVNFELNFTRFSAGSVLAQCGETKVLCTASIEEYVPRFLLGSGQGWLTA 64
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
EY MLP +T R +R + GR+QEIQR+IGR+LRS +DL LG R I IDCDV+QA
Sbjct: 65 EYRMLPSATQERQRR--ELLKLSGRTQEIQRLIGRSLRSCIDLQQLGERSITIDCDVLQA 122
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
D GTRT +ITG +VAL L + Q L+ VAAIS G++ G +DL+Y E
Sbjct: 123 DAGTRTTSITGGYVALALALNKLIKKGELIQS--PLRFPVAAISVGLIEGEAFLDLNYPE 180
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
DS D+D N VMT + ++EVQG+AE +F++ +L+LA+ I +L+ LQ +S
Sbjct: 181 DSKADIDFNVVMTGNLDLIEVQGTAEENSFTRSQLNDILDLAELGIKELVSLQNQALSQ 239
>gi|95929460|ref|ZP_01312203.1| ribonuclease PH [Desulfuromonas acetoxidans DSM 684]
gi|95134576|gb|EAT16232.1| ribonuclease PH [Desulfuromonas acetoxidans DSM 684]
Length = 240
Score = 175 bits (442), Expect = 6e-42, Method: Composition-based stats.
Identities = 121/239 (50%), Positives = 159/239 (66%), Gaps = 2/239 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+R RQ +Q+R ++ R ++YAEGS LV FGDT +L AT+EE VP ++R GW+T
Sbjct: 3 IRADQRQPDQLRPVTFQRGYTRYAEGSVLVSFGDTVVLCNATVEESVPPFMRGEGRGWVT 62
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEY MLPR+T +R REA G+ GGR+ EIQR+IGRALR+V+D ALG R I +DCDV+Q
Sbjct: 63 AEYAMLPRATHSRNSREAARGKVGGRTHEIQRLIGRALRAVIDFDALGERTIRLDCDVLQ 122
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+ITGA+VAL + + + LK +AAIS G++ G P++DL+YG
Sbjct: 123 ADGGTRTASITGAYVALAEAVNGLLRDGVLTVS--PLKDSLAAISVGIVDGQPLLDLNYG 180
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
EDS DVD N VMT SG VEVQG+AE F+ AM LA A+L +Q+ +
Sbjct: 181 EDSKADVDMNIVMTGSGAFVEVQGTAEAEPFTAQQLDAMRALAMKGCAELAGMQRAALE 239
>gi|309388890|gb|ADO76770.1| RNAse PH [Halanaerobium praevalens DSM 2228]
Length = 239
Score = 175 bits (442), Expect = 6e-42, Method: Composition-based stats.
Identities = 118/241 (48%), Positives = 163/241 (67%), Gaps = 2/241 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR GR+ NQ+REI +TR +KYAEGS L++ GDT +L ++E+ VP ++R GW+T
Sbjct: 1 MRTDGREYNQLREIEITRNYTKYAEGSVLIETGDTMVLCNVSIEDSVPYFLRGQNKGWLT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEY +LPR+T +R REA + GR+QEIQR+IGR+LR+++DL +G R I +DCDV+Q
Sbjct: 61 AEYSLLPRATQSRNIREAAKRKLSGRTQEIQRLIGRSLRAIIDLEKIGERTIWVDCDVLQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTAAITGA+VAL D + + LKG++AA S G++ G ++DL Y
Sbjct: 121 ADGGTRTAAITGAFVALVDGINFLLAE--GKIEENPLKGYMAATSVGLVKGEALLDLCYE 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
EDS VD N VMT++G I+E+QG+AE FS++ M LA+ I LI+ QK V+
Sbjct: 179 EDSQAQVDMNIVMTEAGKIIEIQGTAEENPFSREELDQMYELAEKGILGLIEEQKLVLGG 238
Query: 241 E 241
E
Sbjct: 239 E 239
>gi|229032136|ref|ZP_04188113.1| Ribonuclease PH [Bacillus cereus AH1271]
gi|228729192|gb|EEL80191.1| Ribonuclease PH [Bacillus cereus AH1271]
Length = 245
Score = 175 bits (442), Expect = 7e-42, Method: Composition-based stats.
Identities = 112/243 (46%), Positives = 161/243 (66%), Gaps = 3/243 (1%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR+ GR++ ++R I + K+ EGS L++ GDT ++ +AT+EE+VP ++R GW+T
Sbjct: 1 MRVDGREKTELRHIHIHTNYLKHPEGSVLIEVGDTKVICSATIEERVPPFMRGEGKGWVT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEY M+PR+T R RE+ G+ GR+ EIQR+IGRALR+VVDL ALG R + IDCDVIQ
Sbjct: 61 AEYAMIPRATEQRTIRESSKGKVTGRTMEIQRLIGRALRAVVDLEALGERTVWIDCDVIQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY-PIVDLDY 179
ADGGTRTA+ITGA+VA+ + + + +K ++AA S G++ ++DL+Y
Sbjct: 121 ADGGTRTASITGAYVAMVLAFEKL--LQAEKVSKIPVKDYLAATSVGIVQEQGVVLDLNY 178
Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
EDS DVD N +MT G VEVQG+ E ATFS+ +L+ A+ I LI +QK+ +
Sbjct: 179 AEDSKADVDMNVIMTGKGQFVEVQGTGEEATFSRAQLNELLDAAEQGIFQLIDMQKEALG 238
Query: 240 NEV 242
+ V
Sbjct: 239 DIV 241
>gi|90407865|ref|ZP_01216041.1| putative ribonuclease PH [Psychromonas sp. CNPT3]
gi|90311040|gb|EAS39149.1| putative ribonuclease PH [Psychromonas sp. CNPT3]
Length = 239
Score = 175 bits (442), Expect = 7e-42, Method: Composition-based stats.
Identities = 118/241 (48%), Positives = 154/241 (63%), Gaps = 2/241 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR S R Q REI +TR + YAEGS L++ G+T +L A++ + VP +++ GW+T
Sbjct: 1 MRPSKRTPEQNREIKITRNFTDYAEGSVLIEIGNTKVLCNASVSDSVPRFLKGKGKGWVT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEY MLPR+T R +REA G+QGGR+ EIQR+I R+LR+ VDL A G I +DCDVIQ
Sbjct: 61 AEYAMLPRATHTRNQREAAKGKQGGRTLEIQRLIARSLRAAVDLDAFGENMITVDCDVIQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+ITGA +AL D L M LK +AA+S G+ P+ DLDY
Sbjct: 121 ADGGTRTASITGACIALADALNWMVKE--GKIKKSPLKQMIAAVSVGIYKDTPVCDLDYA 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
EDS D N VMT+ G ++E+QG+AE FS + AML+LAK I LI QK ++
Sbjct: 179 EDSNAQTDMNVVMTEDGGMIEIQGTAEDGAFSHEQLLAMLSLAKGGIDKLIVEQKKALTG 238
Query: 241 E 241
E
Sbjct: 239 E 239
>gi|229062175|ref|ZP_04199499.1| Ribonuclease PH [Bacillus cereus AH603]
gi|228717158|gb|EEL68834.1| Ribonuclease PH [Bacillus cereus AH603]
Length = 259
Score = 175 bits (442), Expect = 7e-42, Method: Composition-based stats.
Identities = 109/242 (45%), Positives = 154/242 (63%), Gaps = 1/242 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR+ GR + ++R I + K+ EGS L++ GDT ++ +AT+EE+VP ++R GW+T
Sbjct: 15 MRVDGRGKAELRHIHIHTNYLKHPEGSVLIEVGDTKVICSATIEERVPPFMRGEGKGWVT 74
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEY M+PR+T R RE+ G+ GR+ EIQR+IGRALR+VVDL ALG R + IDCDVIQ
Sbjct: 75 AEYSMIPRATEQRTIRESSKGKVTGRTMEIQRLIGRALRAVVDLEALGERTVWIDCDVIQ 134
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+ITGA+VA+ + + + K V A + ++DL+Y
Sbjct: 135 ADGGTRTASITGAYVAMVLAFEKLL-QAEKVSKIPVKDYLAATSVGVVEEQGVVLDLNYA 193
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
EDS DVD N +MT G VEVQG+ E ATFS+ +L+ A+ I L++ QK+ + +
Sbjct: 194 EDSKADVDMNVIMTGKGQFVEVQGTGEEATFSRAELNELLDAAEQGIFQLVEKQKEALGD 253
Query: 241 EV 242
V
Sbjct: 254 IV 255
>gi|163856581|ref|YP_001630879.1| ribonuclease PH [Bordetella petrii DSM 12804]
gi|163260309|emb|CAP42611.1| ribonuclease PH [Bordetella petrii]
Length = 246
Score = 175 bits (442), Expect = 7e-42, Method: Composition-based stats.
Identities = 121/238 (50%), Positives = 166/238 (69%), Gaps = 2/238 (0%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R SGR +Q+R SL R ++YAEGS LV+ G+TH+L TA++ +KVP +++ GW+TA
Sbjct: 11 RPSGRAVDQLRPFSLQRGYTRYAEGSVLVRAGNTHVLCTASVLDKVPPFLKGRGEGWVTA 70
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
EYGMLPR+T R REA G+Q GR+QEIQR+IGR+LR+V D+ ALG R + +DCDV+QA
Sbjct: 71 EYGMLPRATHTRGDREAARGKQSGRTQEIQRLIGRSLRAVFDMKALGERTLHLDCDVLQA 130
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
DGGTR A+ITGAWVA D + + + ++ VAA+S GM+ G P++DLDY E
Sbjct: 131 DGGTRCASITGAWVAAADAVALL--MQRGDLAANPIRDAVAAVSVGMVAGRPVLDLDYQE 188
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
DS D D N VMT +G VEVQG+ E ATF++ AML LA+ IA L++ Q++ ++
Sbjct: 189 DSACDADVNVVMTGAGAFVEVQGTGEGATFARSELDAMLGLAEQGIAQLVRAQREALA 246
>gi|116671127|ref|YP_832060.1| ribonuclease PH [Arthrobacter sp. FB24]
gi|116611236|gb|ABK03960.1| RNAse PH [Arthrobacter sp. FB24]
Length = 252
Score = 175 bits (442), Expect = 7e-42, Method: Composition-based stats.
Identities = 115/240 (47%), Positives = 162/240 (67%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+R GR +Q+R IS+TR SK AEGS L++FG+T +L TA+L E VP W++ GW+T
Sbjct: 11 IRADGRTPDQLRPISITRGWSKQAEGSALIEFGNTRVLCTASLTEGVPRWLKGEGRGWVT 70
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEY MLPR+T R RE+V G+ GGR+ EI R+IGR+LRS++D ALG I++DCDV+Q
Sbjct: 71 AEYAMLPRATNTRSARESVKGKIGGRTHEISRLIGRSLRSIIDTKALGENTIVLDCDVLQ 130
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTAAITGA+VAL + ++ + + +Q L +AA+S G++ G P++DL Y
Sbjct: 131 ADGGTRTAAITGAYVALAEAIRFARENKIISKNAQPLIDTIAAVSVGIIDGVPMLDLPYV 190
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
ED + D N V+T SG VEVQG+AE A F +D +L+LA L +Q++ ++
Sbjct: 191 EDVRAETDMNVVVTGSGKFVEVQGTAEGAPFDRDELNQLLDLALLGTEQLAAIQRETLAE 250
>gi|328956949|ref|YP_004374335.1| ribonuclease PH [Carnobacterium sp. 17-4]
gi|328673273|gb|AEB29319.1| ribonuclease PH [Carnobacterium sp. 17-4]
Length = 454
Score = 175 bits (442), Expect = 7e-42, Method: Composition-based stats.
Identities = 113/238 (47%), Positives = 155/238 (65%), Gaps = 3/238 (1%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR GR+ ++ R +++ K+ EGS LV FGDT ++ AT+E +VP +++ GW+
Sbjct: 1 MRADGRKNDENRLVTIETNYLKHPEGSVLVSFGDTKVICNATIETRVPRFLKGMGSGWVH 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEY MLPR+T R REA G+ GR+ EIQR+I R+LRS +DL ALG R I +DCDVIQ
Sbjct: 61 AEYSMLPRATNTRNIREAAKGKLSGRTMEIQRLIARSLRSSIDLEALGERSITVDCDVIQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGM-LCGYPIVDLDY 179
ADGGTRTA+ITGA+VAL +Q + D + +K +VAAIS G+ G ++DL+Y
Sbjct: 121 ADGGTRTASITGAFVALKLAIQTLLDSGELTES--PIKENVAAISVGILKDGEAVLDLNY 178
Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
EDS+ +VD N VMT G VE+QG+ E +TFS + ML K I +LI++Q D
Sbjct: 179 LEDSSAEVDMNLVMTSLGQFVEIQGTGEESTFSSEQLSVMLEFGKKGINELIQVQDDA 236
>gi|241762326|ref|ZP_04760406.1| ribonuclease PH [Zymomonas mobilis subsp. mobilis ATCC 10988]
gi|241373120|gb|EER62759.1| ribonuclease PH [Zymomonas mobilis subsp. mobilis ATCC 10988]
Length = 234
Score = 175 bits (442), Expect = 7e-42, Method: Composition-based stats.
Identities = 119/239 (49%), Positives = 163/239 (68%), Gaps = 5/239 (2%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR SGR +Q+R +S+ +++AEGSCL+ FGDT +L TA+LEE++P W+R GW+T
Sbjct: 1 MRPSGRTPDQLRSLSIETGFTRHAEGSCLISFGDTRVLVTASLEERLPSWLRGKGQGWVT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPRST +R REA G+Q GR+QEIQR+IGR+LR+ +DL LG RQI IDCDV+Q
Sbjct: 61 AEYGMLPRSTHSRTNREAARGKQSGRTQEIQRLIGRSLRAGIDLKKLGERQITIDCDVLQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+I+G WVAL + + + + + VAA+SCG+ G P++DLDY
Sbjct: 121 ADGGTRTASISGGWVALRLAVNKLLASGQLTEDPIISQ--VAAVSCGISQGVPVLDLDYA 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
EDST + DANFVM ++EVQ SAE A + ++ +L LA+ + QK ++
Sbjct: 179 EDSTAEADANFVMMGDSRLIEVQASAEGAPYDEE---GLLRLARMGCQQIFAEQKKAVA 234
>gi|329114777|ref|ZP_08243534.1| Ribonuclease PH [Acetobacter pomorum DM001]
gi|326695908|gb|EGE47592.1| Ribonuclease PH [Acetobacter pomorum DM001]
Length = 267
Score = 175 bits (442), Expect = 7e-42, Method: Composition-based stats.
Identities = 116/239 (48%), Positives = 159/239 (66%), Gaps = 2/239 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR SGRQ +QMR I++ + +AEGS L++ G T +L TA++E +VP ++R GW+T
Sbjct: 24 MRPSGRQPDQMRPITIETGFAHHAEGSALIRVGGTEVLCTASIENRVPPFLRGKGTGWVT 83
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPR+T R REA G+Q GR+QEIQR+IGR+LR+V DL+ALG I +DCDV+
Sbjct: 84 AEYGMLPRATHTRGNREAAKGKQSGRTQEIQRLIGRSLRAVTDLNALGEMSITLDCDVLN 143
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTR A+ITGAWVAL L + + L+G VAA+SCG+ ++DLDY
Sbjct: 144 ADGGTRCASITGAWVALRLALGKLVATN--VLPRLPLRGQVAAVSCGLTTEGAVLDLDYV 201
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
EDS+ D NFV+T IVE+QG+AE A F++D F + LA+ + +L + Q +
Sbjct: 202 EDSSASADTNFVLTADRRIVEIQGTAESAPFTEDAFDNLFALARKGVTELFEAQIAAVE 260
>gi|319637683|ref|ZP_07992449.1| ribonuclease PH [Neisseria mucosa C102]
gi|317400838|gb|EFV81493.1| ribonuclease PH [Neisseria mucosa C102]
Length = 242
Score = 174 bits (441), Expect = 7e-42, Method: Composition-based stats.
Identities = 116/234 (49%), Positives = 167/234 (71%), Gaps = 2/234 (0%)
Query: 5 GRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYG 64
GR + +R I +T +A+GSCL++ G+T ++ TA+++E VP ++R + GW+TAEYG
Sbjct: 8 GRAADSLRNIKITPNFLPHADGSCLIECGNTKVICTASIDENVPPFLRGKEQGWVTAEYG 67
Query: 65 MLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGG 124
MLP ST +R++REA +G+Q GR+QEIQR+IGR+LR+VVD+ LG RQI+IDCDVIQADGG
Sbjct: 68 MLPASTASRMRREAAAGKQSGRTQEIQRLIGRSLRAVVDMEKLGERQILIDCDVIQADGG 127
Query: 125 TRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDST 184
TRTA+ITGA+VAL + + S+ ++ VAA+S G++ G P++DLDY EDS
Sbjct: 128 TRTASITGAYVALQIAVDKL--LSDGLISENPIREAVAAVSAGVVGGVPLLDLDYPEDSG 185
Query: 185 IDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
D D N +MT SG I+E+QG+AE A FS + ++ LA IA+L++ QK +
Sbjct: 186 CDSDVNIIMTASGKIIEIQGTAEGAPFSIEELGKLIALAHKGIAELVQHQKAAL 239
>gi|229105117|ref|ZP_04235768.1| Ribonuclease PH [Bacillus cereus Rock3-28]
gi|228678298|gb|EEL32524.1| Ribonuclease PH [Bacillus cereus Rock3-28]
Length = 258
Score = 174 bits (441), Expect = 7e-42, Method: Composition-based stats.
Identities = 112/243 (46%), Positives = 160/243 (65%), Gaps = 3/243 (1%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR+ GR + ++R I + K+ EGS L++ GDT ++ +AT+EE+VP ++R GW+T
Sbjct: 14 MRVDGRGKTELRHIHIHTNYLKHPEGSVLIEVGDTKVICSATIEERVPPFMRGEGKGWVT 73
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEY M+PR+T R RE+ G+ GR+ EIQR+IGRALR+VVDL ALG R + IDCDVIQ
Sbjct: 74 AEYAMIPRATEQRTIRESSKGKVTGRTMEIQRLIGRALRAVVDLEALGERTVWIDCDVIQ 133
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY-PIVDLDY 179
ADGGTRTA+ITGA+VA+ + + + +K ++AA S G++ ++DL+Y
Sbjct: 134 ADGGTRTASITGAYVAMVLAFEKL--LQAEKVSKIPVKDYLAATSVGIVGEQGVVLDLNY 191
Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
EDS DVD N +MT G VEVQG+ E ATFS+ +L+ A+ I LI +QK+ +
Sbjct: 192 AEDSKADVDMNVIMTGKGQFVEVQGTGEEATFSRTQLNELLDAAEQGIFQLIDMQKEALG 251
Query: 240 NEV 242
+ V
Sbjct: 252 DIV 254
>gi|157964776|ref|YP_001499600.1| ribonuclease PH [Rickettsia massiliae MTU5]
gi|157844552|gb|ABV85053.1| Ribonuclease PH [Rickettsia massiliae MTU5]
Length = 250
Score = 174 bits (441), Expect = 7e-42, Method: Composition-based stats.
Identities = 133/240 (55%), Positives = 169/240 (70%), Gaps = 2/240 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR SGR+ NQ+R ISL AEGSCL+K G+TH++ +AT E VP ++R GWIT
Sbjct: 12 MRQSGRKSNQLRPISLELSPLINAEGSCLIKIGNTHVMCSATCETTVPPFLRGQNQGWIT 71
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLP ST R+KREA G+QGGR+QEIQR+IGRA+R V+D+ LG RQIIIDCDVI
Sbjct: 72 AEYGMLPGSTSQRIKREAALGKQGGRTQEIQRLIGRAMRCVIDVKKLGERQIIIDCDVIN 131
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTAAITG++VALH ++ + + + +AAISCG+ G I+DLDY
Sbjct: 132 ADGGTRTAAITGSYVALHLAIRSLMKKRVLKVNPLISQ--IAAISCGIYKGEAILDLDYL 189
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
EDS DVD+NFV +G+++EVQG+AE+ FS+ F AML LAK A+L KLQ V+
Sbjct: 190 EDSDADVDSNFVFAGNGNLIEVQGTAEKNPFSEGQFLAMLKLAKGGAAELFKLQNQVLLE 249
>gi|19705156|ref|NP_602651.1| ribonuclease PH [Fusobacterium nucleatum subsp. nucleatum ATCC
25586]
gi|19713093|gb|AAL93950.1| Ribonuclease PH [Fusobacterium nucleatum subsp. nucleatum ATCC
25586]
Length = 434
Score = 174 bits (441), Expect = 8e-42, Method: Composition-based stats.
Identities = 110/241 (45%), Positives = 157/241 (65%), Gaps = 2/241 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+R GR N+ R+I +T+ V+ YAEGS L++ G+T ++ TA++ +KVP ++R T GW+T
Sbjct: 2 LREDGRNFNEERKIKITKNVNIYAEGSVLIEVGNTKVICTASVSDKVPSFLRGTGKGWVT 61
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEY MLPR+T R REA G+ GR+ EIQR+IGRALR+ +DL LG R I IDCDVIQ
Sbjct: 62 AEYSMLPRATNERNPREASKGKLTGRTVEIQRLIGRALRASIDLEKLGERLITIDCDVIQ 121
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRT +ITG ++AL ++ + + + VAAIS G + +VDL Y
Sbjct: 122 ADGGTRTTSITGGYIALALAIKKLLQEEILEENPLISN--VAAISVGKIDSNLMVDLKYS 179
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
EDS +VD N +M +EVQG+ E +TF++ +L+LA++ I LI+LQ +I+
Sbjct: 180 EDSAAEVDMNVIMNKKDEFIEVQGTGEESTFTRAELNQLLDLAENSIKRLIELQDRIINQ 239
Query: 241 E 241
E
Sbjct: 240 E 240
>gi|326565518|gb|EGE15689.1| ribonuclease PH [Moraxella catarrhalis 12P80B1]
Length = 238
Score = 174 bits (441), Expect = 8e-42, Method: Composition-based stats.
Identities = 126/239 (52%), Positives = 165/239 (69%), Gaps = 2/239 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR + RQ N++R I R+ +K+AEGS LV FGDT +L TA++E VP W++ GW+T
Sbjct: 1 MRSNNRQNNELRPIYFIRQYTKHAEGSVLVCFGDTKVLCTASIEAGVPRWLKGQGKGWLT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPR+TG R +REA G+Q GR+QEIQR+IGR+LR+++DLS LG I IDCDVIQ
Sbjct: 61 AEYGMLPRATGTRTQREAARGKQSGRTQEIQRLIGRSLRAMLDLSKLGENTIYIDCDVIQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+I+GA VAL D L+ K L G VAA+S G+ G ++DLDY
Sbjct: 121 ADGGTRTASISGAAVALIDALE--HLQRRKKLTQDPLLGLVAAVSVGVNQGRVLLDLDYA 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
EDST D D N VMT +G +E+QG+AE F++ AML+LA+ I +I+ QK V+
Sbjct: 179 EDSTCDTDLNVVMTQAGGFIEIQGTAEEKPFTRAEANAMLDLAELGIGQIIEAQKQVLG 237
>gi|237748601|ref|ZP_04579081.1| ribonuclease PH [Oxalobacter formigenes OXCC13]
gi|229379963|gb|EEO30054.1| ribonuclease PH [Oxalobacter formigenes OXCC13]
Length = 247
Score = 174 bits (441), Expect = 8e-42, Method: Composition-based stats.
Identities = 121/239 (50%), Positives = 160/239 (66%), Gaps = 2/239 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+R +GR + MR I R +KYAEGS L FGDT ++ TA++EE VP ++R GW+T
Sbjct: 7 IRANGRPLDSMRSIEFIRNYTKYAEGSVLTVFGDTKVICTASIEESVPPFLRGRGRGWLT 66
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPRST R+ REA GRQ GR+QEIQR+IGR++R+ DL A G R + +DCDVIQ
Sbjct: 67 AEYGMLPRSTHTRMDREAARGRQSGRTQEIQRLIGRSIRAAFDLDAFGERTLKLDCDVIQ 126
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+I+G +A +D M + L+ VAAIS G+ G P++DLDY
Sbjct: 127 ADGGTRTASISGVMIAAYDAFSMMVEE--GLIDKVPLRHFVAAISVGVNQGVPLLDLDYQ 184
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
EDST D D N VMT++G VE+QG+AE FS+ ML +A+ I++LI +QK V+
Sbjct: 185 EDSTCDTDMNVVMTEAGEFVEIQGTAEGGAFSRQTLNDMLGMAEKGISELIGMQKKVLG 243
>gi|163783654|ref|ZP_02178642.1| RNase PH [Hydrogenivirga sp. 128-5-R1-1]
gi|159881059|gb|EDP74575.1| RNase PH [Hydrogenivirga sp. 128-5-R1-1]
Length = 255
Score = 174 bits (441), Expect = 9e-42, Method: Composition-based stats.
Identities = 113/236 (47%), Positives = 159/236 (67%), Gaps = 2/236 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR GR+E+++R + + R + EGSCL++FGDT ++ TA++ E VP +++ GWIT
Sbjct: 1 MRKDGRREDELRPVKIVRDFLSHPEGSCLIEFGDTKVICTASVTESVPPFLKGKGQGWIT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEY MLPR+T R RE+V G+ GR+ EIQRMIGRA+R+ VDL+ LG R + +DCDVIQ
Sbjct: 61 AEYSMLPRATHTRNIRESVQGKISGRTHEIQRMIGRAMRTAVDLTKLGERTLWVDCDVIQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+ITGA+VA+ D L + + S +K VAA+S G++ G P++DL++
Sbjct: 121 ADGGTRTASITGAFVAVADALIKLYED--GIIQSVPIKDFVAAVSVGIVNGKPLLDLNFE 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
EDS VD N V T G EVQ E TFS+D +L+LA I++L++LQ+
Sbjct: 179 EDSMAQVDMNVVGTGEGRFSEVQSMGEEYTFSRDELDNLLDLALKGISELVELQRA 234
>gi|294787314|ref|ZP_06752567.1| tRNA nucleotidyltransferase [Parascardovia denticolens F0305]
gi|294484670|gb|EFG32305.1| tRNA nucleotidyltransferase [Parascardovia denticolens F0305]
Length = 260
Score = 174 bits (441), Expect = 9e-42, Method: Composition-based stats.
Identities = 107/242 (44%), Positives = 157/242 (64%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+R GR +Q+R + +TR ++ EGS L++ G+T +L TAT + VP W R++ GW+T
Sbjct: 17 IRADGRAVDQLRPVKITRGWTQAPEGSVLIECGNTRVLCTATFTQGVPRWRRDSGLGWVT 76
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEY M+PR+T +R RE+V G+ GGR+ EI R+IGR LR +VD+ ALG QI IDCDV+Q
Sbjct: 77 AEYAMIPRATADRTDRESVKGKVGGRTHEISRLIGRVLRGIVDMGALGENQIQIDCDVLQ 136
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA++TGA+VAL D + + +VL V+A+S G++ G P++DL Y
Sbjct: 137 ADGGTRTASVTGAYVALADAVSWAKRNKKIKAGKKVLTDQVSAVSVGIINGTPMLDLPYV 196
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
EDS D N MT SG+ +E+QG+AE FS+ +L+LA+ +L +Q + +
Sbjct: 197 EDSQAMTDMNVAMTGSGNFIEIQGTAEHRPFSRAELNTLLDLAEKGNRELQGMQAEALEQ 256
Query: 241 EV 242
+
Sbjct: 257 AI 258
>gi|291299064|ref|YP_003510342.1| ribonuclease PH [Stackebrandtia nassauensis DSM 44728]
gi|290568284|gb|ADD41249.1| ribonuclease PH [Stackebrandtia nassauensis DSM 44728]
Length = 241
Score = 174 bits (441), Expect = 9e-42, Method: Composition-based stats.
Identities = 115/237 (48%), Positives = 153/237 (64%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R R + +R + R +K+ EGS LV+FGDT +L TA+++ VP W R + GW+TA
Sbjct: 3 RPDNRAPDALRPVKFQRGWTKHPEGSVLVEFGDTRVLCTASVDTGVPRWRRGSGSGWVTA 62
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
EY MLPR+T R REAV G+ GGR+ EI R+IGRALRS +DL ALG I IDCDV+QA
Sbjct: 63 EYSMLPRATNTRGDREAVKGKIGGRTHEISRLIGRALRSCLDLKALGENTITIDCDVLQA 122
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
DGGTRTAAITG++VAL D + + D + ++L VAA+S G++ G P++DL+Y E
Sbjct: 123 DGGTRTAAITGSYVALQDAVTWLTDKKMARKPDKILTRSVAAVSVGVVGGTPVLDLNYVE 182
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
DS+ DVD N V T G VEVQG+ E A F + A+L+LA +L Q +
Sbjct: 183 DSSADVDMNVVCTGDGDFVEVQGTGEEAVFDRSTLDALLDLATKGCKELTGAQVRAL 239
>gi|119503532|ref|ZP_01625615.1| ribonuclease PH [marine gamma proteobacterium HTCC2080]
gi|119460594|gb|EAW41686.1| ribonuclease PH [marine gamma proteobacterium HTCC2080]
Length = 243
Score = 174 bits (441), Expect = 9e-42, Method: Composition-based stats.
Identities = 115/238 (48%), Positives = 159/238 (66%), Gaps = 2/238 (0%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R SGR +++R I+ R + +AEGS LV FG T +L TA+L VP ++R GW+TA
Sbjct: 7 RPSGRALDELRAITFERNFTCHAEGSVLVSFGQTRVLCTASLTPGVPGFLRGKGQGWLTA 66
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
EYGMLPRSTG+R+ REA G+Q GR+ EIQR+IGR+LR+ +DL ALG + +DCDVIQA
Sbjct: 67 EYGMLPRSTGSRMNREASRGKQSGRTVEIQRLIGRSLRAAIDLKALGENTLTLDCDVIQA 126
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
DGGTRTA+I+GA VA+ D L ++ + S LK + A+S G+ G ++DLDY E
Sbjct: 127 DGGTRTASISGACVAVVDALNTLQRKQSLQ--SDPLKFLIGAVSVGVWKGQAVLDLDYAE 184
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
DST D D N V+ + G ++EVQG+AE A F + +ML+LA +I Q++ +S
Sbjct: 185 DSTADTDMNVVVAEGGGLIEVQGTAEGAAFERAELNSMLDLAVAGGEIIISKQREALS 242
>gi|296113600|ref|YP_003627538.1| ribonuclease PH [Moraxella catarrhalis RH4]
gi|295921294|gb|ADG61645.1| ribonuclease PH [Moraxella catarrhalis RH4]
gi|326562662|gb|EGE12964.1| ribonuclease PH [Moraxella catarrhalis 103P14B1]
gi|326564700|gb|EGE14918.1| ribonuclease PH [Moraxella catarrhalis 46P47B1]
gi|326568642|gb|EGE18713.1| ribonuclease PH [Moraxella catarrhalis BC7]
gi|326568768|gb|EGE18838.1| ribonuclease PH [Moraxella catarrhalis BC8]
gi|326572636|gb|EGE22625.1| ribonuclease PH [Moraxella catarrhalis CO72]
gi|326574233|gb|EGE24181.1| ribonuclease PH [Moraxella catarrhalis 101P30B1]
gi|326575018|gb|EGE24947.1| ribonuclease PH [Moraxella catarrhalis O35E]
Length = 238
Score = 174 bits (441), Expect = 9e-42, Method: Composition-based stats.
Identities = 126/239 (52%), Positives = 165/239 (69%), Gaps = 2/239 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR + RQ N++R I R+ +K+AEGS LV FGDT +L TA++E VP W++ GW+T
Sbjct: 1 MRSNNRQNNELRPIHFIRQYTKHAEGSVLVCFGDTKVLCTASIEAGVPRWLKGQGKGWLT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPR+TG R +REA G+Q GR+QEIQR+IGR+LR+++DLS LG I IDCDVIQ
Sbjct: 61 AEYGMLPRATGTRTQREAARGKQSGRTQEIQRLIGRSLRAMLDLSKLGENTIYIDCDVIQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+I+GA VAL D L+ K L G VAA+S G+ G ++DLDY
Sbjct: 121 ADGGTRTASISGAAVALIDALE--HLQRRKKLTQDPLLGLVAAVSVGVNQGRVLLDLDYA 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
EDST D D N VMT +G +E+QG+AE F++ AML+LA+ I +I+ QK V+
Sbjct: 179 EDSTCDTDLNVVMTQAGGFIEIQGTAEEKPFTRAEANAMLDLAELGIGQIIEAQKQVLG 237
>gi|239948344|ref|ZP_04700097.1| ribonuclease PH [Rickettsia endosymbiont of Ixodes scapularis]
gi|239922620|gb|EER22644.1| ribonuclease PH [Rickettsia endosymbiont of Ixodes scapularis]
Length = 239
Score = 174 bits (441), Expect = 9e-42, Method: Composition-based stats.
Identities = 132/238 (55%), Positives = 170/238 (71%), Gaps = 2/238 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR SGR+ NQ+R ISL AEGSCL+K G+TH++ +AT E VP ++R GWIT
Sbjct: 1 MRQSGRKSNQLRPISLELSPLVNAEGSCLIKIGNTHVMCSATCETTVPPFLRGQNQGWIT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLP ST R+KRE G+QGGR+QEIQR+IGRA+R V+DL LG RQIIIDCDVI
Sbjct: 61 AEYGMLPGSTSQRIKRETALGKQGGRTQEIQRLIGRAMRCVIDLKKLGERQIIIDCDVIN 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTAAITG++VALH ++ + + + +AAISCG+ G I+DLDY
Sbjct: 121 ADGGTRTAAITGSYVALHLVIRSLMKKRVLKVNPLISQ--IAAISCGIYKGEAILDLDYL 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
EDS +VD+NFV +G+++EVQG+AE+ FS++ F AML LAK +A+L KLQ V+
Sbjct: 179 EDSDAEVDSNFVFAGNGNLIEVQGTAEKNPFSEEQFLAMLKLAKGGVAELFKLQNQVL 236
>gi|225075090|ref|ZP_03718289.1| hypothetical protein NEIFLAOT_00089 [Neisseria flavescens
NRL30031/H210]
gi|224953574|gb|EEG34783.1| hypothetical protein NEIFLAOT_00089 [Neisseria flavescens
NRL30031/H210]
Length = 277
Score = 174 bits (441), Expect = 9e-42, Method: Composition-based stats.
Identities = 115/234 (49%), Positives = 167/234 (71%), Gaps = 2/234 (0%)
Query: 5 GRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYG 64
GR + +R I +T +A+GSCL++ G+T ++ TA+++E VP ++R + GW+TAEYG
Sbjct: 43 GRAADSLRNIKITPNFLPHADGSCLIECGNTKVICTASIDENVPPFLRGKEQGWVTAEYG 102
Query: 65 MLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGG 124
MLP ST +R++REA +G+Q GR+QEIQR+IGR+LR+VVD+ LG RQI+IDCDVIQADGG
Sbjct: 103 MLPASTASRMRREAAAGKQSGRTQEIQRLIGRSLRAVVDMEKLGERQILIDCDVIQADGG 162
Query: 125 TRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDST 184
TRTA+ITGA+VAL + + S+ ++ VAA+S G++ G P++DLDY EDS
Sbjct: 163 TRTASITGAYVALQIAVDKL--LSDGLISENPIREAVAAVSAGVVGGVPLLDLDYPEDSG 220
Query: 185 IDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
D D N +MT SG I+E+QG+AE A FS + ++ LA IA+L++ Q+ +
Sbjct: 221 CDSDVNIIMTASGKIIEIQGTAEGAPFSIEELGKLIALAHKGIAELVQHQQAAL 274
>gi|30022573|ref|NP_834204.1| ribonuclease PH [Bacillus cereus ATCC 14579]
gi|42783632|ref|NP_980879.1| ribonuclease PH [Bacillus cereus ATCC 10987]
gi|206969838|ref|ZP_03230792.1| ribonuclease PH [Bacillus cereus AH1134]
gi|206976011|ref|ZP_03236921.1| ribonuclease PH [Bacillus cereus H3081.97]
gi|217961976|ref|YP_002340546.1| ribonuclease PH [Bacillus cereus AH187]
gi|222097944|ref|YP_002532001.1| ribonuclease ph [Bacillus cereus Q1]
gi|228910315|ref|ZP_04074132.1| Ribonuclease PH [Bacillus thuringiensis IBL 200]
gi|228960757|ref|ZP_04122396.1| Ribonuclease PH [Bacillus thuringiensis serovar pakistani str.
T13001]
gi|228987732|ref|ZP_04147843.1| Ribonuclease PH [Bacillus thuringiensis serovar tochigiensis BGSC
4Y1]
gi|229048198|ref|ZP_04193767.1| Ribonuclease PH [Bacillus cereus AH676]
gi|229071999|ref|ZP_04205209.1| Ribonuclease PH [Bacillus cereus F65185]
gi|229081747|ref|ZP_04214240.1| Ribonuclease PH [Bacillus cereus Rock4-2]
gi|229111953|ref|ZP_04241497.1| Ribonuclease PH [Bacillus cereus Rock1-15]
gi|229129777|ref|ZP_04258744.1| Ribonuclease PH [Bacillus cereus BDRD-Cer4]
gi|229141223|ref|ZP_04269762.1| Ribonuclease PH [Bacillus cereus BDRD-ST26]
gi|229147051|ref|ZP_04275411.1| Ribonuclease PH [Bacillus cereus BDRD-ST24]
gi|229152684|ref|ZP_04280872.1| Ribonuclease PH [Bacillus cereus m1550]
gi|229158099|ref|ZP_04286169.1| Ribonuclease PH [Bacillus cereus ATCC 4342]
gi|229180760|ref|ZP_04308098.1| Ribonuclease PH [Bacillus cereus 172560W]
gi|229198610|ref|ZP_04325312.1| Ribonuclease PH [Bacillus cereus m1293]
gi|296504969|ref|YP_003666669.1| ribonuclease PH [Bacillus thuringiensis BMB171]
gi|61215974|sp|Q72ZT1|RNPH_BACC1 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|61216033|sp|Q817P3|RNPH_BACCR RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|226736887|sp|B7HQP4|RNPH_BACC7 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|254808580|sp|B9IZ73|RNPH_BACCQ RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|29898131|gb|AAP11405.1| Ribonuclease PH [Bacillus cereus ATCC 14579]
gi|42739561|gb|AAS43487.1| ribonuclease PH [Bacillus cereus ATCC 10987]
gi|206735526|gb|EDZ52694.1| ribonuclease PH [Bacillus cereus AH1134]
gi|206745763|gb|EDZ57160.1| ribonuclease PH [Bacillus cereus H3081.97]
gi|217063584|gb|ACJ77834.1| ribonuclease PH [Bacillus cereus AH187]
gi|221242002|gb|ACM14712.1| ribonuclease PH [Bacillus cereus Q1]
gi|228584892|gb|EEK43008.1| Ribonuclease PH [Bacillus cereus m1293]
gi|228602738|gb|EEK60221.1| Ribonuclease PH [Bacillus cereus 172560W]
gi|228625418|gb|EEK82175.1| Ribonuclease PH [Bacillus cereus ATCC 4342]
gi|228630830|gb|EEK87471.1| Ribonuclease PH [Bacillus cereus m1550]
gi|228636439|gb|EEK92909.1| Ribonuclease PH [Bacillus cereus BDRD-ST24]
gi|228642264|gb|EEK98556.1| Ribonuclease PH [Bacillus cereus BDRD-ST26]
gi|228653693|gb|EEL09564.1| Ribonuclease PH [Bacillus cereus BDRD-Cer4]
gi|228671517|gb|EEL26817.1| Ribonuclease PH [Bacillus cereus Rock1-15]
gi|228701592|gb|EEL54085.1| Ribonuclease PH [Bacillus cereus Rock4-2]
gi|228711158|gb|EEL63123.1| Ribonuclease PH [Bacillus cereus F65185]
gi|228723185|gb|EEL74561.1| Ribonuclease PH [Bacillus cereus AH676]
gi|228772006|gb|EEM20461.1| Ribonuclease PH [Bacillus thuringiensis serovar tochigiensis BGSC
4Y1]
gi|228798973|gb|EEM45948.1| Ribonuclease PH [Bacillus thuringiensis serovar pakistani str.
T13001]
gi|228849375|gb|EEM94212.1| Ribonuclease PH [Bacillus thuringiensis IBL 200]
gi|296326021|gb|ADH08949.1| ribonuclease PH [Bacillus thuringiensis BMB171]
gi|324328384|gb|ADY23644.1| ribonuclease PH [Bacillus thuringiensis serovar finitimus YBT-020]
Length = 245
Score = 174 bits (441), Expect = 9e-42, Method: Composition-based stats.
Identities = 112/243 (46%), Positives = 161/243 (66%), Gaps = 3/243 (1%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR+ GR++ ++R I + K+ EGS L++ GDT ++ +AT+EE+VP ++R GW+T
Sbjct: 1 MRVDGREKTELRHIHIHTNYLKHPEGSVLIEVGDTKVICSATIEERVPPFMRGEGKGWVT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEY M+PR+T R RE+ G+ GR+ EIQR+IGRALR+VVDL ALG R + IDCDVIQ
Sbjct: 61 AEYAMIPRATEQRTIRESSKGKVTGRTMEIQRLIGRALRAVVDLEALGERTVWIDCDVIQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY-PIVDLDY 179
ADGGTRTA+ITGA+VA+ + + + +K ++AA S G++ ++DL+Y
Sbjct: 121 ADGGTRTASITGAYVAMVLAFEKL--LQAEKVSKIPVKDYLAATSVGIVEEQGVVLDLNY 178
Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
EDS DVD N +MT G VEVQG+ E ATFS+ +L+ A+ I LI +QK+ +
Sbjct: 179 AEDSKADVDMNVIMTGKGQFVEVQGTGEEATFSRAQLNELLDAAEQGIFQLIDMQKEALG 238
Query: 240 NEV 242
+ V
Sbjct: 239 DIV 241
>gi|139438503|ref|ZP_01772019.1| Hypothetical protein COLAER_01011 [Collinsella aerofaciens ATCC
25986]
gi|133776042|gb|EBA39862.1| Hypothetical protein COLAER_01011 [Collinsella aerofaciens ATCC
25986]
Length = 241
Score = 174 bits (441), Expect = 9e-42, Method: Composition-based stats.
Identities = 124/238 (52%), Positives = 164/238 (68%), Gaps = 4/238 (1%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R +GR N++R + LTR V K+A GSCL +FGDT +L AT+EE VP W + K GW+TA
Sbjct: 8 RANGRAANELRPVKLTRGVMKHAHGSCLAEFGDTRVLCAATIEEGVPGWRKGAKAGWVTA 67
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
EY MLP STG R KRE + + GRS EI+R+IGR+LR+VV++ ALG + +DCDVIQA
Sbjct: 68 EYAMLPASTGKRCKREYANRK--GRSMEIERLIGRSLRTVVNMKALGEYTVTVDCDVIQA 125
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
DGGTRTA+ITGAWVALHD L + L G VAAIS G++ G ++DLDY E
Sbjct: 126 DGGTRTASITGAWVALHDALAMWVEA--GKIERIPLTGQVAAISMGVVDGNTMLDLDYSE 183
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
DS +VD N V TD+G I+E+QG+ E+A F + A+L+L IA+LI+LQ+ ++
Sbjct: 184 DSHAEVDMNLVATDTGEIIELQGTGEQAPFDRKRLNALLDLGDKGIAELIELQRQALA 241
>gi|167628594|ref|YP_001679093.1| ribonuclease ph [Heliobacterium modesticaldum Ice1]
gi|167591334|gb|ABZ83082.1| ribonuclease ph [Heliobacterium modesticaldum Ice1]
Length = 243
Score = 174 bits (441), Expect = 9e-42, Method: Composition-based stats.
Identities = 116/239 (48%), Positives = 158/239 (66%), Gaps = 2/239 (0%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R+ GRQ +Q+R + + R+ + EGS L+ G+T ++ TAT+EEKVP + + + GW+TA
Sbjct: 3 RVDGRQADQLRPVQIQRQYLIHPEGSVLITVGNTKVICTATVEEKVPPFQKGSGKGWVTA 62
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
EYGMLPR+TG R +RE G+ GR+ EIQR+IGRALRSVVDL LG R I IDCDVIQA
Sbjct: 63 EYGMLPRATGTRTQREVTRGKATGRTMEIQRLIGRALRSVVDLQRLGERTIWIDCDVIQA 122
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
DGGTRTA+ITGA+VAL D + + + + +AA+S G + G ++DL Y E
Sbjct: 123 DGGTRTASITGAFVALKDACRRLLKNKQIQKDPIIEA--LAAVSVGKVAGELLLDLAYEE 180
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
D+ +VD N VMT G VE+QG+AE F +D AML LA+ I +LI+ Q ++
Sbjct: 181 DAKAEVDMNVVMTAGGRFVELQGTAEGTPFGRDELDAMLRLAEKGICELIEAQNQALAE 239
>gi|297529172|ref|YP_003670447.1| ribonuclease PH [Geobacillus sp. C56-T3]
gi|297252424|gb|ADI25870.1| ribonuclease PH [Geobacillus sp. C56-T3]
Length = 460
Score = 174 bits (441), Expect = 9e-42, Method: Composition-based stats.
Identities = 117/241 (48%), Positives = 154/241 (63%), Gaps = 3/241 (1%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR GR ++R + + K+AEGS L++ GDT ++ TAT+EEKVP ++R GWIT
Sbjct: 1 MRADGRSSCELRPVHIHPHYMKHAEGSVLIEIGDTKVICTATVEEKVPSFMRGGGKGWIT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPR+T R REA G+ GR+ EIQR+IGRALRSVVDL LG R I IDCDVIQ
Sbjct: 61 AEYGMLPRATEQRNVREASKGKVSGRTMEIQRLIGRALRSVVDLEQLGERTIWIDCDVIQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY-PIVDLDY 179
ADGGTRTA+ITGA+VAL L + + + ++ +AA S G+ + I+DLDY
Sbjct: 121 ADGGTRTASITGAYVALVLALAKLVEE--GKLEALPIRDFLAATSVGIDPEHGVILDLDY 178
Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
ED+ VD N VMT +G VE+QG+ E A FS+ +L A+ I LI +Q+ +
Sbjct: 179 NEDARAKVDMNVVMTGAGQFVEIQGTGEEAVFSRAELDELLEAAQIGIEQLIAVQRCALG 238
Query: 240 N 240
Sbjct: 239 E 239
>gi|228954763|ref|ZP_04116785.1| Ribonuclease PH [Bacillus thuringiensis serovar kurstaki str.
T03a001]
gi|107124175|gb|ABF83610.1| Rph [Bacillus thuringiensis serovar kurstaki]
gi|228804961|gb|EEM51558.1| Ribonuclease PH [Bacillus thuringiensis serovar kurstaki str.
T03a001]
Length = 245
Score = 174 bits (441), Expect = 9e-42, Method: Composition-based stats.
Identities = 112/243 (46%), Positives = 161/243 (66%), Gaps = 3/243 (1%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR+ GR++ ++R I + K+ EGS L++ GDT ++ +AT+EE+VP ++R GW+T
Sbjct: 1 MRVDGREKTELRHIHIHTNYLKHPEGSVLIEVGDTKVICSATIEERVPPFMRGEGKGWVT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEY M+PR+T R RE+ G+ GR+ EIQR+IGRALR+VVDL ALG R + IDCDVIQ
Sbjct: 61 AEYAMIPRATEQRTIRESSKGKVTGRTMEIQRLIGRALRAVVDLEALGERTVWIDCDVIQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY-PIVDLDY 179
ADGGTRTA+ITGA+VA+ + + + +K ++AA S G++ ++DL+Y
Sbjct: 121 ADGGTRTASITGAYVAMVLAFEKL--LQVEKVSKIPVKDYLAATSVGIVEEQGVVLDLNY 178
Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
EDS DVD N +MT G VEVQG+ E ATFS+ +L+ A+ I LI +QK+ +
Sbjct: 179 AEDSKADVDMNVIMTGKGQFVEVQGTGEEATFSRAQLNELLDAAEQGIFQLIDMQKEALG 238
Query: 240 NEV 242
+ V
Sbjct: 239 DIV 241
>gi|330466053|ref|YP_004403796.1| ribonuclease PH [Verrucosispora maris AB-18-032]
gi|328809024|gb|AEB43196.1| ribonuclease PH [Verrucosispora maris AB-18-032]
Length = 243
Score = 174 bits (441), Expect = 1e-41, Method: Composition-based stats.
Identities = 118/240 (49%), Positives = 158/240 (65%), Gaps = 1/240 (0%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R GRQ +Q+R ++LTR S + EGS LV+FG T +L TA++ E VP W R + GW+TA
Sbjct: 3 RPDGRQPDQLRPVTLTRGWSTHPEGSVLVEFGATRVLCTASVTEGVPRWRRGSGLGWVTA 62
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
EY MLPR+T R RE+V GR GGR+ EI R+IGR+LR+ +DL ALG I++DCDV+QA
Sbjct: 63 EYAMLPRATNTRSDRESVKGRVGGRTHEISRLIGRSLRAAIDLKALGENSIVLDCDVLQA 122
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKF-QLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
DGGTRTAAITGA+VALHD + + +V+ VAAIS G++ G P +DL Y
Sbjct: 123 DGGTRTAAITGAYVALHDAVSWLAARKALTGTPEKVMHRSVAAISVGVVAGEPRLDLCYD 182
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
ED +VD N V T +G VEVQG+ E F++D A+L+LA DL + Q+ + +
Sbjct: 183 EDVAAEVDMNVVCTGAGDFVEVQGTGEAGVFARDQLDALLDLATVGCLDLAEAQRKALGS 242
>gi|229192693|ref|ZP_04319652.1| Ribonuclease PH [Bacillus cereus ATCC 10876]
gi|228590783|gb|EEK48643.1| Ribonuclease PH [Bacillus cereus ATCC 10876]
Length = 258
Score = 174 bits (441), Expect = 1e-41, Method: Composition-based stats.
Identities = 112/243 (46%), Positives = 161/243 (66%), Gaps = 3/243 (1%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR+ GR++ ++R I + K+ EGS L++ GDT ++ +AT+EE+VP ++R GW+T
Sbjct: 14 MRVDGREKTELRHIHIHTNYLKHPEGSVLIEVGDTKVICSATIEERVPPFMRGEGKGWVT 73
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEY M+PR+T R RE+ G+ GR+ EIQR+IGRALR+VVDL ALG R + IDCDVIQ
Sbjct: 74 AEYAMIPRATEQRTIRESSKGKVTGRTMEIQRLIGRALRAVVDLEALGERTVWIDCDVIQ 133
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY-PIVDLDY 179
ADGGTRTA+ITGA+VA+ + + + +K ++AA S G++ ++DL+Y
Sbjct: 134 ADGGTRTASITGAYVAMVLAFEKL--LQAEKVSKIPVKDYLAATSVGIVEEQGVVLDLNY 191
Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
EDS DVD N +MT G VEVQG+ E ATFS+ +L+ A+ I LI +QK+ +
Sbjct: 192 AEDSKADVDMNVIMTGKGQFVEVQGTGEEATFSRAQLNELLDAAEQGIFQLIDMQKEALG 251
Query: 240 NEV 242
+ V
Sbjct: 252 DIV 254
>gi|217967720|ref|YP_002353226.1| ribonuclease PH [Dictyoglomus turgidum DSM 6724]
gi|226736904|sp|B8E0G7|RNPH_DICTD RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|217336819|gb|ACK42612.1| ribonuclease PH [Dictyoglomus turgidum DSM 6724]
Length = 240
Score = 174 bits (440), Expect = 1e-41, Method: Composition-based stats.
Identities = 116/239 (48%), Positives = 159/239 (66%), Gaps = 2/239 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+R+ R +R + +TR+ KY GS L++ G+T ++ T ++EEKVP +++ T GW+T
Sbjct: 2 VRIDKRSNTDLRPVKITRKYLKYPLGSVLIEMGETKVICTVSMEEKVPPFLKGTNQGWLT 61
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLP ST R R+ V G GRSQEIQR+IGR+LR+VVD S LG R I ID DVIQ
Sbjct: 62 AEYGMLPGSTPERKVRDVVKGAINGRSQEIQRLIGRSLRAVVDFSKLGERTIWIDADVIQ 121
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTAAITGA+VAL+D L+ ++ ++ VAA+S G++ G ++DL
Sbjct: 122 ADGGTRTAAITGAFVALYDALEKLKRE--GIIKEIPIREFVAAVSVGIVDGEILLDLSAN 179
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
ED +VD N VMT+SG VE+QG+AE+ F+ + MLNLAK I LI++QK +
Sbjct: 180 EDMRAEVDMNVVMTESGKFVEIQGTAEKTPFTHEQLQHMLNLAKQGIMRLIEIQKKTLG 238
>gi|326797277|ref|YP_004315097.1| ribonuclease PH [Marinomonas mediterranea MMB-1]
gi|326548041|gb|ADZ93261.1| Ribonuclease PH [Marinomonas mediterranea MMB-1]
Length = 241
Score = 174 bits (440), Expect = 1e-41, Method: Composition-based stats.
Identities = 114/238 (47%), Positives = 163/238 (68%), Gaps = 2/238 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR SGR +Q+R + TR +K+AEGS L++ GDT ++ TAT+ VP +++ GWIT
Sbjct: 1 MRPSGRAADQLRPMKFTRNFTKHAEGSVLIECGDTKVICTATVVSGVPRFLKGKGQGWIT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPRST +R+ REA G+QGGR+ EIQR+IGR+LR+ +DL LG I IDCDVIQ
Sbjct: 61 AEYGMLPRSTHSRMDREAARGKQGGRTVEIQRLIGRSLRAAIDLKKLGENTITIDCDVIQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+I+G +VAL D ++ + + K + +AAIS G+ G P++DLDY
Sbjct: 121 ADGGTRTASISGGFVALADAVKTLVE--QKKLKENPIVSQIAAISVGVYKGTPVLDLDYP 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
EDS + D N +M D G +E+QG+AE A F + ML++A+ I +++++Q+ V+
Sbjct: 179 EDSNAETDMNVIMNDKGGFIEIQGTAEGAAFGDEQMMGMLSVARKGINEIMEMQRQVL 236
>gi|194017374|ref|ZP_03055986.1| ribonuclease PH [Bacillus pumilus ATCC 7061]
gi|194011242|gb|EDW20812.1| ribonuclease PH [Bacillus pumilus ATCC 7061]
Length = 242
Score = 174 bits (440), Expect = 1e-41, Method: Composition-based stats.
Identities = 110/243 (45%), Positives = 158/243 (65%), Gaps = 3/243 (1%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MRL R +++R+I + + EGS L+ G+T ++ A++E++VP ++R GWIT
Sbjct: 1 MRLDERHYDELRKIEIEAGYITHPEGSVLISAGNTKVICNASIEDRVPPFLRGQGKGWIT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEY MLPR+T R RE+ G+ GR+ EIQR+IGRALR+VVDL LG R I IDCDVIQ
Sbjct: 61 AEYSMLPRATAQRTIRESSKGKVTGRTMEIQRLIGRALRAVVDLEKLGERTIWIDCDVIQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY-PIVDLDY 179
ADGGTRTA+ITGA+VA+ +Q + + ++AAIS G+ ++DL+Y
Sbjct: 121 ADGGTRTASITGAFVAMTLAIQKLRAE--GVIKQNPITDYLAAISVGIDSQQGLLLDLNY 178
Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
EDS+ +VD N +MT +G VE+QG+ E ATFS++ +L+LA+ I +LI+ QK V
Sbjct: 179 EEDSSAEVDMNVIMTGAGRFVELQGTGEEATFSREQLNGLLDLAEKGIKELIEKQKAVTG 238
Query: 240 NEV 242
+
Sbjct: 239 EVI 241
>gi|241767033|ref|ZP_04764818.1| ribonuclease PH [Acidovorax delafieldii 2AN]
gi|241362436|gb|EER58380.1| ribonuclease PH [Acidovorax delafieldii 2AN]
Length = 243
Score = 174 bits (440), Expect = 1e-41, Method: Composition-based stats.
Identities = 123/237 (51%), Positives = 164/237 (69%), Gaps = 2/237 (0%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R GR +Q+R + +TRR + +AEGS L++FG+T +L TA++E+KVP R T GW+T+
Sbjct: 6 RSGGRAADQLRPVRITRRYTMHAEGSVLIEFGNTQVLCTASVEDKVPPHQRGTGEGWVTS 65
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
EYGMLPR+T R REA G+Q GR+QEIQR+IGR+LR+V DL LG R I +DCDVIQA
Sbjct: 66 EYGMLPRATHKRSDREAAKGKQSGRTQEIQRLIGRSLRAVFDLRLLGERTIQLDCDVIQA 125
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
DGGTRTAAITGAWVA D + + ++G VAAIS G++ G P++DL+Y E
Sbjct: 126 DGGTRTAAITGAWVAAQDAVNQLLASGKITAS--PIRGSVAAISVGIVQGTPLLDLEYAE 183
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
D D D N VMT +GH VEVQG+AE A F++ +L LA+ IA+L+ LQ+ +
Sbjct: 184 DVGCDTDMNVVMTGAGHFVEVQGTAEGAAFTRAEMDQLLGLAEKGIAELVALQQQSL 240
>gi|67458795|ref|YP_246419.1| ribonuclease PH [Rickettsia felis URRWXCal2]
gi|75535816|sp|Q4UJN4|RNPH_RICFE RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|67004328|gb|AAY61254.1| Ribonuclease PH [Rickettsia felis URRWXCal2]
Length = 239
Score = 174 bits (440), Expect = 1e-41, Method: Composition-based stats.
Identities = 130/238 (54%), Positives = 169/238 (71%), Gaps = 2/238 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR SGR+ NQ+R ISL AEGSCL+K G+TH++ +AT E VP ++R GW+T
Sbjct: 1 MRQSGRKSNQLRPISLELSPLINAEGSCLIKIGNTHVMCSATCETTVPPFLRGQNQGWVT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLP ST R+KREA G+QGGR+QEIQR+IGR +R V+DL LG RQIIIDCDVI
Sbjct: 61 AEYGMLPGSTSQRIKREAAQGKQGGRTQEIQRLIGRNMRCVIDLKKLGERQIIIDCDVIN 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTAAITG++VALH ++ + + + +AA+SCG+ G I+DLDY
Sbjct: 121 ADGGTRTAAITGSYVALHLAIRSLMKKRILKVNPLISQ--IAAVSCGIYKGEAILDLDYL 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
EDS +VD+NFV +G+++EVQG+AE+ FS++ F AML LAK A+L KLQ V+
Sbjct: 179 EDSDAEVDSNFVFAGNGNLIEVQGTAEKEPFSEEQFIAMLKLAKGGAAELFKLQNQVL 236
>gi|292490867|ref|YP_003526306.1| ribonuclease PH [Nitrosococcus halophilus Nc4]
gi|291579462|gb|ADE13919.1| ribonuclease PH [Nitrosococcus halophilus Nc4]
Length = 239
Score = 174 bits (440), Expect = 1e-41, Method: Composition-based stats.
Identities = 123/240 (51%), Positives = 168/240 (70%), Gaps = 2/240 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR SGR +++R I LTR +KYAEGS LV+FGDT ++ TA++E++VP +++ GW+T
Sbjct: 1 MRPSGRAPDELRPIRLTRHYTKYAEGSVLVEFGDTRVICTASVEDRVPRFLKGKGQGWVT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPRST R+ REA GRQGGR+ EIQR+IGR+LR++VDLSALG + IDCDVIQ
Sbjct: 61 AEYGMLPRSTNIRMGREAAQGRQGGRTMEIQRLIGRSLRAIVDLSALGEITVTIDCDVIQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+ITGA+VAL D + + + + G VA++S G+ G P++DLDY
Sbjct: 121 ADGGTRTASITGAYVALVDAVGSLLKK--RVIAHSPIHGQVASVSVGICEGRPVLDLDYI 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
EDST + D N +M ++G +E+QG+AE F + AML LAK I L+ Q + ++
Sbjct: 179 EDSTAETDMNVIMNEAGGFIEIQGTAEGHAFRMNELQAMLELAKSGIGTLLAKQTEALAK 238
>gi|229175161|ref|ZP_04302677.1| Ribonuclease PH [Bacillus cereus MM3]
gi|228608297|gb|EEK65603.1| Ribonuclease PH [Bacillus cereus MM3]
Length = 245
Score = 174 bits (440), Expect = 1e-41, Method: Composition-based stats.
Identities = 112/243 (46%), Positives = 160/243 (65%), Gaps = 3/243 (1%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR+ GR+ ++R I + K+ EGS L++ GDT ++ +AT+EE+VP ++R GW+T
Sbjct: 1 MRVDGRERTELRHIHIHTNYLKHPEGSVLIEVGDTKVICSATIEERVPPFMRGEGKGWVT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEY M+PR+T R RE+ G+ GR+ EIQR+IGRALR+VVDL ALG R + IDCDVIQ
Sbjct: 61 AEYAMIPRATEQRTIRESSKGKVTGRTMEIQRLIGRALRAVVDLEALGERTVWIDCDVIQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY-PIVDLDY 179
ADGGTRTA+ITGA+VA+ + + + +K ++AA S G++ ++DL+Y
Sbjct: 121 ADGGTRTASITGAYVAMVLAFEKL--LQAEKVSKIPVKDYLAATSVGIVEEQGVVLDLNY 178
Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
EDS DVD N +MT G VEVQG+ E ATFS+ +L+ A+ I LI +QK+ +
Sbjct: 179 VEDSKADVDMNVIMTGKGQFVEVQGTGEEATFSRAQLNELLDAAEQGIFQLIDMQKEALG 238
Query: 240 NEV 242
+ V
Sbjct: 239 DIV 241
>gi|23308945|ref|NP_601703.2| ribonuclease PH [Corynebacterium glutamicum ATCC 13032]
gi|62391341|ref|YP_226743.1| ribonuclease PH [Corynebacterium glutamicum ATCC 13032]
gi|24638170|sp|Q8NMR4|RNPH_CORGL RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|21325272|dbj|BAB99894.1| RNase PH [Corynebacterium glutamicum ATCC 13032]
gi|41326682|emb|CAF21164.1| PROBABLE RIBONUCLEASE PH [Corynebacterium glutamicum ATCC 13032]
Length = 245
Score = 174 bits (440), Expect = 1e-41, Method: Composition-based stats.
Identities = 107/238 (44%), Positives = 149/238 (62%), Gaps = 2/238 (0%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R GR ++QMR + +TR + GS LV+FG+T ++ TA++E VP + R++ GW+TA
Sbjct: 9 RFDGRAQDQMRAVKITRGFTSNPAGSVLVEFGNTRVMCTASVELGVPRFKRDSGEGWLTA 68
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
EY MLP +T R +RE+++G+ GR+ EI R+IGR+LR+ VDLS LG I IDCDV+QA
Sbjct: 69 EYAMLPAATAERNRRESMAGKVKGRTHEISRLIGRSLRAAVDLSQLGENTIAIDCDVLQA 128
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
DGGTRTA+ITGA+VAL L VAA+S G++ G +DL Y E
Sbjct: 129 DGGTRTASITGAYVAL--ADAIKVLQERGVVPGSPLLAPVAAVSVGLVDGNVCLDLPYEE 186
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
DS DVD N VMT+ G VE+QG+ E TF++ ML+ A+ +L+ QK +
Sbjct: 187 DSRADVDLNVVMTEHGEFVEIQGTGEETTFTRAQLNDMLDHAEKGCRELVAAQKAALG 244
>gi|225175207|ref|ZP_03729203.1| ribonuclease PH [Dethiobacter alkaliphilus AHT 1]
gi|225169383|gb|EEG78181.1| ribonuclease PH [Dethiobacter alkaliphilus AHT 1]
Length = 239
Score = 174 bits (440), Expect = 1e-41, Method: Composition-based stats.
Identities = 114/238 (47%), Positives = 158/238 (66%), Gaps = 4/238 (1%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR+ GR+ ++MR + +T KY EGS L++ GDT ++ TA++EEKVP ++R GW+T
Sbjct: 1 MRVDGRRTDEMRPLKITPEFLKYPEGSVLIEVGDTRVICTASVEEKVPPFLRGENKGWVT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEY MLPR+T R G+ GRS EIQR+IGRALRSVVDL ALG R + +DCDV+Q
Sbjct: 61 AEYAMLPRATQIRT--MRERGKISGRSSEIQRLIGRALRSVVDLKALGERTVWVDCDVVQ 118
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTAAI+G++VAL+ L + + ++AA S G++ ++DL +
Sbjct: 119 ADGGTRTAAISGSFVALYLALSKLVAA--GTLSEVPVTDYLAATSIGIVDDKLMLDLAFS 176
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
EDS DVD N VMT SG+IVEVQG+AE A FS+ M++LA I +++ QK ++
Sbjct: 177 EDSKADVDMNVVMTGSGNIVEVQGTAEGAAFSRQAMDEMMDLAAKGIDEIVDYQKRLL 234
>gi|315227127|ref|ZP_07868914.1| tRNA nucleotidyltransferase [Parascardovia denticolens DSM 10105]
gi|315119577|gb|EFT82710.1| tRNA nucleotidyltransferase [Parascardovia denticolens DSM 10105]
Length = 263
Score = 174 bits (440), Expect = 1e-41, Method: Composition-based stats.
Identities = 107/242 (44%), Positives = 157/242 (64%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+R GR +Q+R + +TR ++ EGS L++ G+T +L TAT + VP W R++ GW+T
Sbjct: 20 IRADGRAVDQLRPVKITRGWTQAPEGSVLIECGNTRVLCTATFTQGVPRWRRDSGLGWVT 79
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEY M+PR+T +R RE+V G+ GGR+ EI R+IGR LR +VD+ ALG QI IDCDV+Q
Sbjct: 80 AEYAMIPRATADRTDRESVKGKVGGRTHEISRLIGRVLRGIVDMGALGENQIQIDCDVLQ 139
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA++TGA+VAL D + + +VL V+A+S G++ G P++DL Y
Sbjct: 140 ADGGTRTASVTGAYVALADAVSWAKRNKKIKAGKKVLTDQVSAVSVGIINGTPMLDLPYV 199
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
EDS D N MT SG+ +E+QG+AE FS+ +L+LA+ +L +Q + +
Sbjct: 200 EDSQAMTDMNVAMTGSGNFIEIQGTAEHRPFSRAELNTLLDLAEKGNRELQGMQAEALEQ 259
Query: 241 EV 242
+
Sbjct: 260 AI 261
>gi|53802880|ref|YP_115411.1| ribonuclease PH [Methylococcus capsulatus str. Bath]
gi|61215834|sp|Q602N9|RNPH_METCA RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|53756641|gb|AAU90932.1| ribonuclease PH [Methylococcus capsulatus str. Bath]
Length = 243
Score = 174 bits (440), Expect = 1e-41, Method: Composition-based stats.
Identities = 118/238 (49%), Positives = 167/238 (70%), Gaps = 2/238 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR SGR+ +Q+R I+ T +K+AEGS LV+FGDT ++ TA++EE+VP +++ GWIT
Sbjct: 1 MRPSGRRPDQLRRIAFTCNYTKHAEGSVLVEFGDTRVICTASVEERVPPFLKGKGSGWIT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPR+T R REA G+QGGR+ EIQR+IGR+LR+ ++L ALG R + +DCDVIQ
Sbjct: 61 AEYGMLPRATHERTGREAARGKQGGRTMEIQRLIGRSLRAALNLEALGERTVTLDCDVIQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+ITG +VAL +Q + + + + G +A++S G+ G P++DLDY
Sbjct: 121 ADGGTRTASITGGYVALVLAVQRLLKS--RKIKTNPVHGQIASVSVGICQGVPVLDLDYA 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
ED + D N VM D+G +E+QG+AE F +D AML LA+ IADL+ Q++ +
Sbjct: 179 EDCDAETDMNVVMNDAGAFIEIQGTAEGHAFRRDELDAMLRLAEAGIADLLLHQQEAL 236
>gi|325981263|ref|YP_004293665.1| ribonuclease PH [Nitrosomonas sp. AL212]
gi|325530782|gb|ADZ25503.1| ribonuclease PH [Nitrosomonas sp. AL212]
Length = 240
Score = 174 bits (440), Expect = 1e-41, Method: Composition-based stats.
Identities = 117/238 (49%), Positives = 163/238 (68%), Gaps = 2/238 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+R R Q+R +++ R +K+A+GS L++ GDT ++ TA++ E+VP ++R GW+T
Sbjct: 2 IRSHQRTPAQIRPVNIIRHYTKHADGSVLIECGDTKVICTASISEQVPPFLRGQGQGWLT 61
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLP ST R++REA G+Q GR+ EIQR+IGRALR+ VDL LG R I +DCDVIQ
Sbjct: 62 AEYGMLPGSTNTRMQREAAKGKQSGRTMEIQRLIGRALRAAVDLKKLGERTIQLDCDVIQ 121
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+ITGA+VALHD ++ + + HVAAIS G+ G ++DLDY
Sbjct: 122 ADGGTRTASITGAFVALHDAIEKLIYQQLIETS--PITDHVAAISVGIHQGVAMLDLDYV 179
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
EDS+ D D N VMT + I+EVQG+AE F++ ML+LA+ I +LI +Q+ V+
Sbjct: 180 EDSSCDTDMNVVMTGNLGIIEVQGTAEGNAFNRKELDTMLDLAQQGIQELITIQRKVL 237
>gi|117923369|ref|YP_863986.1| ribonuclease PH [Magnetococcus sp. MC-1]
gi|117607125|gb|ABK42580.1| RNAse PH [Magnetococcus sp. MC-1]
Length = 243
Score = 173 bits (439), Expect = 1e-41, Method: Composition-based stats.
Identities = 131/238 (55%), Positives = 171/238 (71%), Gaps = 2/238 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+R+SGR+ ++MR +++TR +K+AEGSCL+ FGDT +L TAT+EE P W+RN GW+T
Sbjct: 5 LRISGRRPDEMRAVTITRHYTKHAEGSCLIAFGDTQVLCTATVEESQPRWMRNEDRGWVT 64
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPRST R+ REA G+Q GR+ EIQR+IGRA+R+VVDL ALG R I +DCDVIQ
Sbjct: 65 AEYGMLPRSTNVRMGREAAKGKQSGRTLEIQRLIGRAMRAVVDLQALGKRTIWLDCDVIQ 124
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+ITGA+VA+HD + + L+ HVAA+SCGM+ G P +DLDY
Sbjct: 125 ADGGTRTASITGAFVAMHDAVTGLLKA--GLIRHNPLRDHVAAVSCGMVAGMPALDLDYQ 182
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
EDS D D NFVMT +G VE+QG+AE F++ F +M LA I L++ QK +
Sbjct: 183 EDSRCDTDMNFVMTGAGGFVEIQGTAEGVPFTRPEFESMAALADQGIKALVQAQKLAL 240
>gi|229163445|ref|ZP_04291396.1| Ribonuclease PH [Bacillus cereus R309803]
gi|228620014|gb|EEK76889.1| Ribonuclease PH [Bacillus cereus R309803]
Length = 245
Score = 173 bits (439), Expect = 1e-41, Method: Composition-based stats.
Identities = 112/243 (46%), Positives = 161/243 (66%), Gaps = 3/243 (1%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR+ GR++ ++R I + K+ EGS L++ GDT ++ +AT+EE+VP ++R GW+T
Sbjct: 1 MRVDGREKTELRHIHIHTNYLKHPEGSVLIEVGDTKVICSATIEERVPPFMRGEGKGWVT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEY M+PR+T R RE+ G+ GR+ EIQR+IGRALR+VVDL ALG R + IDCDVIQ
Sbjct: 61 AEYAMIPRATEQRTIRESSKGKVTGRTMEIQRLIGRALRAVVDLEALGERTVWIDCDVIQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY-PIVDLDY 179
ADGGTRTA+ITGA+VA+ + + + +K ++AA S G++ ++DL+Y
Sbjct: 121 ADGGTRTASITGAYVAMVLAFEKL--LQAEKVSKIPVKDYLAATSVGIVEEQGVVLDLNY 178
Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
EDS DVD N +MT G VEVQG+ E ATFS+ +L+ A+ I LI +QK+ +
Sbjct: 179 IEDSKADVDMNVIMTGKGQFVEVQGTGEEATFSRAQLNELLDAAEQGIFQLIDMQKEALG 238
Query: 240 NEV 242
+ V
Sbjct: 239 DIV 241
>gi|226941559|ref|YP_002796633.1| RnpH [Laribacter hongkongensis HLHK9]
gi|254808590|sp|C1DCK5|RNPH_LARHH RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|226716486|gb|ACO75624.1| RnpH [Laribacter hongkongensis HLHK9]
Length = 238
Score = 173 bits (439), Expect = 1e-41, Method: Composition-based stats.
Identities = 125/237 (52%), Positives = 168/237 (70%), Gaps = 2/237 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR S R +++R + R +++AEGS LV+FGDT ++ TAT+EE VP +++ GW+T
Sbjct: 1 MRPSQRAASELRPVRFIRHYTRHAEGSVLVEFGDTKVICTATVEESVPGFLKGKGQGWVT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPRST +R++REA SG+Q GR+QEIQR+IGR+LR+VVDL LG RQI++DCDVIQ
Sbjct: 61 AEYGMLPRSTHSRMRREAASGKQSGRTQEIQRLIGRSLRAVVDLQKLGERQIVVDCDVIQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+I+GAWVAL D + + L+ HVAA+S GM+ G P++DLDY
Sbjct: 121 ADGGTRTASISGAWVALADAIDGLMAK--GLLTENPLRDHVAAVSVGMVDGQPVLDLDYT 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
EDS D D N VMT G VE+QG+AE FS++ A+L LA + I ++ LQ+
Sbjct: 179 EDSGCDTDMNVVMTGQGGFVEIQGTAEGVPFSREDMQALLALADEGIRAIVGLQQAA 235
>gi|157693251|ref|YP_001487713.1| ribonuclease PH [Bacillus pumilus SAFR-032]
gi|166991082|sp|A8FFY6|RNPH_BACP2 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|157682009|gb|ABV63153.1| tRNA nucleotidyltransferase [Bacillus pumilus SAFR-032]
Length = 242
Score = 173 bits (439), Expect = 1e-41, Method: Composition-based stats.
Identities = 110/243 (45%), Positives = 158/243 (65%), Gaps = 3/243 (1%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MRL R +++R+I + + EGS L+ G+T ++ A++E++VP ++R GWIT
Sbjct: 1 MRLDERHYDELRKIEIEAGYITHPEGSVLISAGNTKVICNASIEDRVPPFLRGEGKGWIT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEY MLPR+T R RE+ G+ GR+ EIQR+IGRALR+VVDL LG R I IDCDVIQ
Sbjct: 61 AEYSMLPRATAQRTIRESSKGKVTGRTMEIQRLIGRALRAVVDLEKLGERTIWIDCDVIQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY-PIVDLDY 179
ADGGTRTA+ITGA+VA+ +Q + + ++AAIS G+ ++DL+Y
Sbjct: 121 ADGGTRTASITGAFVAMTLAIQKLRAE--GAIKQNPITDYLAAISVGIDSQQGLLLDLNY 178
Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
EDS+ +VD N +MT +G VE+QG+ E ATFS++ +L+LA+ I +LI+ QK V
Sbjct: 179 EEDSSAEVDMNVIMTGAGRFVELQGTGEEATFSREQLNGLLDLAEKGIKELIEKQKAVTG 238
Query: 240 NEV 242
+
Sbjct: 239 EVI 241
>gi|222056103|ref|YP_002538465.1| ribonuclease PH [Geobacter sp. FRC-32]
gi|254808588|sp|B9M3E3|RNPH_GEOSF RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|221565392|gb|ACM21364.1| ribonuclease PH [Geobacter sp. FRC-32]
Length = 238
Score = 173 bits (439), Expect = 1e-41, Method: Composition-based stats.
Identities = 126/240 (52%), Positives = 166/240 (69%), Gaps = 2/240 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR GR E +RE+ +TR K+AEGS LV+FGDT ++ TA++E VP ++R GW+T
Sbjct: 1 MRFDGRGEGSLREVRITRNYIKHAEGSVLVEFGDTKVICTASVESSVPPFLRGKGTGWVT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEY MLPR+T +R REA G+ GGR+ EIQR+IGR+LR+VVD+S LG R IIIDCDVIQ
Sbjct: 61 AEYSMLPRATHSRSPREAAKGKVGGRTHEIQRLIGRSLRAVVDMSLLGERSIIIDCDVIQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+ITGA+VAL D LQ + S ++ VAA+S G++ G ++DL+Y
Sbjct: 121 ADGGTRTASITGAYVALCDALQGLVAK--GELSSLPIREAVAAVSVGIVGGVAVLDLNYV 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
EDS +VD NFVMT S VEVQG+AE F+ + AM LA D I L ++Q+ V++
Sbjct: 179 EDSAAEVDMNFVMTSSNRFVEVQGTAEAEPFTIEQMDAMRTLAVDGIKQLFQIQQAVLAR 238
>gi|114326689|ref|YP_743846.1| ribonuclease PH [Granulibacter bethesdensis CGDNIH1]
gi|114314863|gb|ABI60923.1| ribonuclease PH [Granulibacter bethesdensis CGDNIH1]
Length = 250
Score = 173 bits (439), Expect = 1e-41, Method: Composition-based stats.
Identities = 122/237 (51%), Positives = 163/237 (68%), Gaps = 2/237 (0%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R SGR + +R +SL + +AEGSCL++ G T +L TA+ E ++P ++R T GW+TA
Sbjct: 10 RPSGRAADALRSVSLETGFAHHAEGSCLIRMGRTEVLCTASAEPRIPGFLRGTGKGWVTA 69
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
EYGMLPR+T R REA G+Q GR+QEIQR+IGRALR+VVD A+G I +DCDV+ A
Sbjct: 70 EYGMLPRATHKRGDREAARGKQSGRTQEIQRLIGRALRAVVDRDAMGEMSITLDCDVLNA 129
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
DGGTR A++TGA+VAL M + L G VAA+SCG++ G P++DLDY E
Sbjct: 130 DGGTRCASVTGAYVALSLAFHKMVKA--GVLKAVPLHGQVAAVSCGVVGGQPVLDLDYIE 187
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
DS + D+NFV+TD+G IVE+QG+AE A FS+ F AML LA+ A L +Q+D I
Sbjct: 188 DSGAEADSNFVLTDAGGIVEIQGTAEGAPFSEADFSAMLGLARQGTAQLFTMQRDAI 244
>gi|326201646|ref|ZP_08191517.1| ribonuclease PH [Clostridium papyrosolvens DSM 2782]
gi|325988246|gb|EGD49071.1| ribonuclease PH [Clostridium papyrosolvens DSM 2782]
Length = 240
Score = 173 bits (439), Expect = 1e-41, Method: Composition-based stats.
Identities = 110/238 (46%), Positives = 158/238 (66%), Gaps = 2/238 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+R GR Q+R + + R K+AEGS L++ GDT ++ TA++EE++P + +++ GWIT
Sbjct: 2 LRHDGRSNTQLRPVRILRNYIKHAEGSVLIEVGDTKVICTASVEERIPPFKKDSGEGWIT 61
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEY MLPR+T R +R+ + GRS EIQR+IGR+LR++VDL LG R I +DCDVIQ
Sbjct: 62 AEYSMLPRATAVRNQRDISKLKLNGRSSEIQRLIGRSLRTIVDLKLLGERTITVDCDVIQ 121
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+ITG +VAL D + + + G VAA S G++ G ++DL Y
Sbjct: 122 ADGGTRTASITGGYVALADACRTLVKN--GLISKTPIIGIVAATSVGIVNGEELLDLCYI 179
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
EDS +VD N +MTD G +E+Q + E+++FS+ +LNLA+ I +LIK Q +VI
Sbjct: 180 EDSNAEVDMNVIMTDKGEFIELQATGEKSSFSKKQLDKLLNLAESGIHELIKAQNEVI 237
>gi|82523716|emb|CAI78497.1| hypothetical protein [uncultured beta proteobacterium]
Length = 243
Score = 173 bits (439), Expect = 1e-41, Method: Composition-based stats.
Identities = 115/240 (47%), Positives = 156/240 (65%), Gaps = 2/240 (0%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R SGR + +R +S TR +K+AEGS LV GDT +L TA++ +K+P + + GW+TA
Sbjct: 6 RPSGRAPDALRTLSFTRGFTKHAEGSVLVSMGDTRVLCTASVLDKIPPHKKGSGEGWVTA 65
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
EYGMLPRST R REA G+Q GR+QEIQR+IGR+LR+VVDL LG R + IDCDV+QA
Sbjct: 66 EYGMLPRSTHTRSDREAARGKQSGRTQEIQRLIGRSLRAVVDLKKLGERTLHIDCDVLQA 125
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
DGGTR A+I GA+VA+ D + + L +AA+S G+ G+P++DLDY E
Sbjct: 126 DGGTRCASICGAYVAVADAVAGLLRE--GKLAETPLNDSIAAVSVGVYEGHPVLDLDYIE 183
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
D D D N VMT SG IVE+QG+AE FS+ A+++LA I + Q+ + +
Sbjct: 184 DFECDTDMNVVMTGSGGIVEIQGTAEGVPFSRATLDALVDLAAAGIVQISTAQQAALKAD 243
>gi|15604475|ref|NP_220993.1| ribonuclease PH [Rickettsia prowazekii str. Madrid E]
gi|6226021|sp|Q9ZCT5|RNPH_RICPR RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|3861169|emb|CAA15069.1| RIBONUCLEASE PH (rph) [Rickettsia prowazekii]
gi|292572257|gb|ADE30172.1| Ribonuclease PH [Rickettsia prowazekii Rp22]
Length = 240
Score = 173 bits (439), Expect = 1e-41, Method: Composition-based stats.
Identities = 129/238 (54%), Positives = 171/238 (71%), Gaps = 2/238 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR SGR+ NQ+R ISL AEGSCL+K G+TH++ +AT E VP ++R GWIT
Sbjct: 1 MRQSGRKSNQLRPISLELSPLINAEGSCLIKIGNTHVMCSATCETTVPPFLRGQNQGWIT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGM+P ST +R+KREA G+QGGR+QEIQR+IGRA+R V++L LG RQIIIDCDVI
Sbjct: 61 AEYGMIPGSTSHRIKREAALGKQGGRTQEIQRLIGRAMRCVINLQKLGERQIIIDCDVIN 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTAAITG++VALH ++ + + + +AAISCG+ G ++DLDY
Sbjct: 121 ADGGTRTAAITGSYVALHLAIRSLMKKRILKVNPLISQ--IAAISCGIYKGNAVLDLDYL 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
EDS +VD+NFV +G+++EVQG+AE+ FS++ F AML LAK + +L KLQ V+
Sbjct: 179 EDSDAEVDSNFVFACNGNLIEVQGTAEKEPFSEEQFLAMLKLAKSGVVELFKLQNQVL 236
>gi|157803502|ref|YP_001492051.1| ribonuclease PH [Rickettsia canadensis str. McKiel]
gi|166228312|sp|A8EY33|RNPH_RICCK RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|157784765|gb|ABV73266.1| ribonuclease PH [Rickettsia canadensis str. McKiel]
Length = 239
Score = 173 bits (439), Expect = 1e-41, Method: Composition-based stats.
Identities = 133/238 (55%), Positives = 170/238 (71%), Gaps = 2/238 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR SGR+ NQ+R ISL AEGSCL+K G TH++ +AT E VP ++R GW+T
Sbjct: 1 MRQSGRKSNQLRPISLELSPLVNAEGSCLIKIGKTHVICSATCETTVPPFLRGQNQGWVT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLP ST R+KREAV G+QGGR+QEIQR+IGRA+R V+DL LG RQIIIDCDVI
Sbjct: 61 AEYGMLPSSTSQRIKREAVLGKQGGRTQEIQRLIGRAMRCVIDLKKLGERQIIIDCDVIN 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTAAITG+++ALH ++ + S + + +AAISCG+ G I+DLDY
Sbjct: 121 ADGGTRTAAITGSYIALHLAIRLLMKKSILKVNPLISQ--IAAISCGIYKGETILDLDYL 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
EDS +VD NFV +G+++EVQG+AE+ FS++ F AML LAK A+L KLQ V+
Sbjct: 179 EDSDAEVDINFVFAGNGNLIEVQGTAEKKPFSEEQFLAMLKLAKVGAAELFKLQNQVL 236
>gi|228923234|ref|ZP_04086524.1| Ribonuclease PH [Bacillus thuringiensis serovar huazhongensis BGSC
4BD1]
gi|228836440|gb|EEM81791.1| Ribonuclease PH [Bacillus thuringiensis serovar huazhongensis BGSC
4BD1]
Length = 245
Score = 173 bits (439), Expect = 2e-41, Method: Composition-based stats.
Identities = 113/243 (46%), Positives = 162/243 (66%), Gaps = 3/243 (1%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR+ GR++ ++R I + K+ EGS L++ GDT ++ +AT+EE+VP ++R GW+T
Sbjct: 1 MRVDGREKTELRHIHIHTNYLKHPEGSVLIEVGDTKVICSATIEERVPPFMRGEGKGWVT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEY M+PR+T R RE+ G+ GR+ EIQR+IGRALR+VVDL ALG R + IDCDVIQ
Sbjct: 61 AEYAMIPRATEQRTIRESSKGKVTGRTMEIQRLIGRALRAVVDLEALGERTVWIDCDVIQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY-PIVDLDY 179
ADGGTRTA+ITGA+VA+ + + + +K ++AA S G++ ++DL+Y
Sbjct: 121 ADGGTRTASITGAYVAMVLAFEKL--LQAEKVSKIPVKDYLAATSVGIVEEQGVVLDLNY 178
Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
EDS DVD N +MT G VEVQG+ E ATFS+ +L+ A+ I LI +QK+V+
Sbjct: 179 AEDSKADVDMNVIMTGKGQFVEVQGTGEEATFSRAQLNELLDAAEQGIFQLIDMQKEVLG 238
Query: 240 NEV 242
+ V
Sbjct: 239 DIV 241
>gi|270308459|ref|YP_003330517.1| ribonuclease PH [Dehalococcoides sp. VS]
gi|270154351|gb|ACZ62189.1| ribonuclease PH [Dehalococcoides sp. VS]
Length = 239
Score = 173 bits (439), Expect = 2e-41, Method: Composition-based stats.
Identities = 110/236 (46%), Positives = 151/236 (63%), Gaps = 2/236 (0%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R GR NQ+R I++T +AEGS L++ G T ++ + ++E+KVP ++RN+ GW+TA
Sbjct: 3 RGDGRNFNQLRPITITPGFQSFAEGSVLIEQGKTRVICSVSMEDKVPQFLRNSGTGWVTA 62
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
EY MLPRST R +R++ +G+ GRSQEIQR+IGR+LRS VDL+ALG R IIDCDVIQA
Sbjct: 63 EYSMLPRSTVTRTQRDSSAGKISGRSQEIQRLIGRSLRSCVDLTALGERSFIIDCDVIQA 122
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
D GTRTA+ITGA++AL+ + M D VAA+S + G ++D Y E
Sbjct: 123 DAGTRTASITGAYIALYLAFKKMVD--MGILSKMPFTSQVAAVSVSIFKGNIVLDPCYDE 180
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
D +VD N VM D VE+QG+AE TFS+D +L L + I L +Q +
Sbjct: 181 DFQAEVDFNLVMNDRAEFVEIQGTAEGKTFSRDTLDQVLKLGESGIKQLFDIQNSI 236
>gi|254295455|ref|YP_003061478.1| ribonuclease PH [Hirschia baltica ATCC 49814]
gi|254043986|gb|ACT60781.1| ribonuclease PH [Hirschia baltica ATCC 49814]
Length = 243
Score = 173 bits (439), Expect = 2e-41, Method: Composition-based stats.
Identities = 131/239 (54%), Positives = 163/239 (68%), Gaps = 2/239 (0%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R S R +RE+SL S+YAEGSCLVKFG TH+L TA+ VP W++ T GW+TA
Sbjct: 6 RPSKRAPESLREVSLEVGKSRYAEGSCLVKFGHTHVLCTASWTGDVPRWMKGTGKGWVTA 65
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
EYGMLPR+T R +REA +G+Q GR+QEIQR+IGRALRSV DL ALG QI IDCDVIQA
Sbjct: 66 EYGMLPRATHTRGRREAAAGKQSGRTQEIQRLIGRALRSVTDLEALGENQITIDCDVIQA 125
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
DGGTRTAAITG +VAL + ++++ + L AAISCG+ P++DLDY E
Sbjct: 126 DGGTRTAAITGGYVALALAINYLKEE--GIISTNPLVSQAAAISCGVYQDVPVLDLDYAE 183
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
DS VDANF+M+ G I+EVQG+ E FS++ F AM +LA +L LQK I N
Sbjct: 184 DSNAMVDANFIMSSDGRIIEVQGTGEERPFSREEFLAMSDLADAGCKELFALQKAAIDN 242
>gi|90415478|ref|ZP_01223412.1| ribonuclease PH [marine gamma proteobacterium HTCC2207]
gi|90332801|gb|EAS47971.1| ribonuclease PH [marine gamma proteobacterium HTCC2207]
Length = 239
Score = 173 bits (439), Expect = 2e-41, Method: Composition-based stats.
Identities = 122/239 (51%), Positives = 165/239 (69%), Gaps = 2/239 (0%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R SGR+ Q+R + +TR + +AEGS L++FG T ++ TA++ VP ++R GW+TA
Sbjct: 3 RPSGRRPEQLRPVKITRDFTCHAEGSVLIEFGKTKVICTASVTPGVPRFLRGKGEGWVTA 62
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
EYGMLPRSTG+R+ REA G+QGGR+QEIQR+IGR+LR+ VD+ LG I IDCDVIQA
Sbjct: 63 EYGMLPRSTGSRMDREAARGKQGGRTQEIQRLIGRSLRAAVDMKKLGEHTINIDCDVIQA 122
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
DGGTRTA+ITGA VA+ D ++ K L L +A++S G+ G P++DLDY E
Sbjct: 123 DGGTRTASITGACVAMVDAIR--HLQRKKAILDDPLLCMIASVSVGIYKGTPVLDLDYPE 180
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
DS + D N VM G +EVQG+AE A FS++ AML LAK IADL+++QK ++
Sbjct: 181 DSKAETDMNVVMNSEGGFIEVQGTAEAAPFSEEELSAMLGLAKQGIADLVRVQKMALAQ 239
>gi|308235684|ref|ZP_07666421.1| ribonuclease PH [Gardnerella vaginalis ATCC 14018]
gi|311114281|ref|YP_003985502.1| tRNA nucleotidyltransferase [Gardnerella vaginalis ATCC 14019]
gi|310945775|gb|ADP38479.1| tRNA nucleotidyltransferase [Gardnerella vaginalis ATCC 14019]
Length = 254
Score = 173 bits (439), Expect = 2e-41, Method: Composition-based stats.
Identities = 110/240 (45%), Positives = 153/240 (63%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+R GR +++R + +TR + EGS L++ G+T ++ TAT VP W R+T GW+T
Sbjct: 14 IRFDGRDVDELRPVKITRNFTNVPEGSVLIECGNTRVMCTATFTIGVPRWRRDTGLGWVT 73
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEY MLPR+T R RE+V G+ GGR+ EI R+IGR LR V+D+ A+G I IDCDV+Q
Sbjct: 74 AEYSMLPRATAERTDRESVKGKIGGRTHEISRLIGRCLRGVIDMKAMGECLIQIDCDVLQ 133
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+ITGA+VAL D L E + VLK V+A+S G++ G P++DL Y
Sbjct: 134 ADGGTRTASITGAYVALVDALNWAEKHKHIRSAKNVLKDSVSAVSVGVINGTPMLDLPYV 193
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
EDS D N MT SG+ +E+QG+AE F++D +L+LA +L Q+ +S
Sbjct: 194 EDSQAMTDMNVAMTGSGNFIEIQGTAEHRPFNRDELNVLLDLAAKGNRELQAAQRAALSQ 253
>gi|311741212|ref|ZP_07715036.1| tRNA nucleotidyltransferase [Corynebacterium pseudogenitalium ATCC
33035]
gi|311303382|gb|EFQ79461.1| tRNA nucleotidyltransferase [Corynebacterium pseudogenitalium ATCC
33035]
Length = 242
Score = 173 bits (439), Expect = 2e-41, Method: Composition-based stats.
Identities = 104/238 (43%), Positives = 153/238 (64%), Gaps = 2/238 (0%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R GR +QMR + +TR + GS LV+FG+T ++ TA++E VP + R++ GW+TA
Sbjct: 6 RADGRALDQMRSVRITRNFTTNPAGSVLVEFGNTRVMCTASVEYGVPRFKRDSGEGWLTA 65
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
EY MLP +T +R+ RE++ G+ GR+ EI R++GR+LR+ VDL LG I +DCDV+QA
Sbjct: 66 EYAMLPSATHDRMPRESMKGKVKGRTHEISRLVGRSLRAAVDLEELGENTIQLDCDVLQA 125
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
DGGTRTA+ITGA+VAL D + H++ + L +AA+S G++ G +DL Y E
Sbjct: 126 DGGTRTASITGAYVALADAIAHLKAE--GVVPGEPLLDPIAAVSVGIIDGEICLDLPYEE 183
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
DS +VD N VM +SG VE+QG+ E F ++ ML++A+ +LI QK +
Sbjct: 184 DSRAEVDLNVVMQESGDFVEIQGTGEHGLFGREELNEMLDVAQKGCRELIAAQKAALG 241
>gi|229117982|ref|ZP_04247342.1| Ribonuclease PH [Bacillus cereus Rock1-3]
gi|228665431|gb|EEL20913.1| Ribonuclease PH [Bacillus cereus Rock1-3]
Length = 245
Score = 173 bits (439), Expect = 2e-41, Method: Composition-based stats.
Identities = 112/243 (46%), Positives = 161/243 (66%), Gaps = 3/243 (1%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR+ GR++ ++R I + K+ EGS L++ GDT ++ +AT+EE+VP ++R GW+T
Sbjct: 1 MRVDGREKTELRHIHIHTNYLKHPEGSVLIEVGDTKVICSATIEERVPPFMRGEGKGWVT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEY M+PR+T R RE+ G+ GR+ EIQR+IGRALR+VVDL ALG R + IDCDVIQ
Sbjct: 61 AEYAMIPRATEQRTIRESSKGKVTGRTMEIQRLIGRALRAVVDLEALGERTVWIDCDVIQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY-PIVDLDY 179
ADGGTRTA+ITGA+VA+ + + + +K ++AA S G++ ++DL+Y
Sbjct: 121 ADGGTRTASITGAYVAMVLAFEKL--LQAEKVSKIPVKDYLAATSVGIVEEQGVVLDLNY 178
Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
EDS DVD N +MT G VEVQG+ E ATFS+ +L+ A+ I LI +QK+ +
Sbjct: 179 AEDSKADVDMNVIMTGKGQFVEVQGTGEEATFSRTQLNELLDAAEQGIFQLIDMQKEALG 238
Query: 240 NEV 242
+ V
Sbjct: 239 DIV 241
>gi|229098953|ref|ZP_04229888.1| Ribonuclease PH [Bacillus cereus Rock3-29]
gi|228684451|gb|EEL38394.1| Ribonuclease PH [Bacillus cereus Rock3-29]
Length = 258
Score = 173 bits (438), Expect = 2e-41, Method: Composition-based stats.
Identities = 112/243 (46%), Positives = 161/243 (66%), Gaps = 3/243 (1%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR+ GR++ ++R I + K+ EGS L++ GDT ++ +AT+EE+VP ++R GW+T
Sbjct: 14 MRVDGREKTELRHIHIHTNYLKHPEGSVLIEVGDTKVICSATIEERVPPFMRGEGKGWVT 73
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEY M+PR+T R RE+ G+ GR+ EIQR+IGRALR+VVDL ALG R + IDCDVIQ
Sbjct: 74 AEYAMIPRATEQRTIRESSKGKVTGRTMEIQRLIGRALRAVVDLEALGERTVWIDCDVIQ 133
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY-PIVDLDY 179
ADGGTRTA+ITGA+VA+ + + + +K ++AA S G++ ++DL+Y
Sbjct: 134 ADGGTRTASITGAYVAMVLAFEKL--LQAEKVSKIPVKDYLAATSVGIVEEQGVVLDLNY 191
Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
EDS DVD N +MT G VEVQG+ E ATFS+ +L+ A+ I LI +QK+ +
Sbjct: 192 AEDSKADVDMNVIMTGKGQFVEVQGTGEEATFSRTQLNELLDAAEQGIFQLIDMQKEALG 251
Query: 240 NEV 242
+ V
Sbjct: 252 DIV 254
>gi|226307366|ref|YP_002767326.1| ribonuclease PH [Rhodococcus erythropolis PR4]
gi|229494008|ref|ZP_04387777.1| ribonuclease PH [Rhodococcus erythropolis SK121]
gi|259494126|sp|C1A1V2|RNPH_RHOE4 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|226186483|dbj|BAH34587.1| ribonuclease PH [Rhodococcus erythropolis PR4]
gi|229319077|gb|EEN84929.1| ribonuclease PH [Rhodococcus erythropolis SK121]
Length = 261
Score = 173 bits (438), Expect = 2e-41, Method: Composition-based stats.
Identities = 104/239 (43%), Positives = 156/239 (65%), Gaps = 1/239 (0%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R GR ++++R + +TR + + GS LV+FG+T ++ TA++EE VP W + + GW+TA
Sbjct: 4 REDGRADDELRTVKITRGFTSHPAGSVLVEFGNTRVMCTASVEEGVPRWRKGSGLGWLTA 63
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
EY MLP +T R RE+V G+ GGR+QEI R+IGR+LR+ +DL+A+G I +DCDV+QA
Sbjct: 64 EYAMLPAATHTRSGRESVKGKVGGRTQEISRLIGRSLRACIDLAAIGENTIALDCDVLQA 123
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
DGGTRTAA+TGA+VAL D ++ Q + +AA+S G++ G +DL Y E
Sbjct: 124 DGGTRTAAVTGAYVALVDA-VTYLRAADLLSDPQPISCGIAAVSVGVVDGRVRLDLPYEE 182
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
DS +VD N V TD+G +VE+QG+ E ATF + +L+ A L ++Q+ ++
Sbjct: 183 DSRAEVDMNVVATDTGTLVEIQGTGEGATFPRSTLDKLLDSALAGCEQLFEIQRQALAE 241
>gi|254512351|ref|ZP_05124418.1| ribonuclease PH [Rhodobacteraceae bacterium KLH11]
gi|221536062|gb|EEE39050.1| ribonuclease PH [Rhodobacteraceae bacterium KLH11]
Length = 237
Score = 173 bits (438), Expect = 2e-41, Method: Composition-based stats.
Identities = 121/227 (53%), Positives = 163/227 (71%), Gaps = 2/227 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR SGR N+MR +S+ +K+AEGSCL+K GDTH+L TAT+E++VP +I+ + GW+T
Sbjct: 1 MRPSGRDLNEMRAVSIETGFTKHAEGSCLIKMGDTHVLCTATIEDRVPPFIKGSGLGWVT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPR+T R++REA SG+QGGR+ EIQR+IGRALR+ VD ALG RQI +DCDV+Q
Sbjct: 61 AEYGMLPRATNTRMRREAASGKQGGRTVEIQRLIGRALRAGVDRVALGERQITVDCDVLQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTR A+ITG WVAL + + + V VAA+SCG+ G P++DLDY
Sbjct: 121 ADGGTRCASITGGWVALRLAVNKLMKAGDVISDPLV--DPVAAVSCGIYAGQPVLDLDYP 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRI 227
EDS VD NF+MT +G ++EVQ SAE + FS+ +++LA+ +
Sbjct: 179 EDSEAGVDGNFIMTGTGKLIEVQMSAEGSVFSRTQMDQLMDLAEKGV 225
>gi|261867317|ref|YP_003255239.1| ribonuclease PH [Aggregatibacter actinomycetemcomitans D11S-1]
gi|261412649|gb|ACX82020.1| ribonuclease PH [Aggregatibacter actinomycetemcomitans D11S-1]
Length = 238
Score = 173 bits (438), Expect = 2e-41, Method: Composition-based stats.
Identities = 122/240 (50%), Positives = 165/240 (68%), Gaps = 2/240 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR + R +Q R I +TR +K+AEGS LV+FGDT +L TA++EE VP +++ GW+T
Sbjct: 1 MRPNQRANHQPRPIQITRHYTKHAEGSVLVEFGDTKVLCTASVEESVPRFLKGQGQGWVT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPRST +R++REA G+QGGR+ EIQR+I R+LR++VDL ALG R I +DCDVIQ
Sbjct: 61 AEYGMLPRSTHSRMQREAAKGKQGGRTLEIQRLIARSLRAMVDLEALGERCITLDCDVIQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+ITGA VAL D L + +N LKG VAAIS G++ G + DL+Y
Sbjct: 121 ADGGTRTASITGACVALCDALNSLV--TNGTLAKNPLKGLVAAISVGIVNGEAVCDLEYV 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
EDS + D N VM + G ++EVQG+AE FS + +L+LAK + + Q+ ++
Sbjct: 179 EDSAAETDMNVVMMEDGRMIEVQGTAEGKPFSHEELLTLLDLAKQGCDMIFQTQRATLAE 238
>gi|294085187|ref|YP_003551947.1| RNase PH [Candidatus Puniceispirillum marinum IMCC1322]
gi|292664762|gb|ADE39863.1| RNase PH [Candidatus Puniceispirillum marinum IMCC1322]
Length = 245
Score = 173 bits (438), Expect = 2e-41, Method: Composition-based stats.
Identities = 128/237 (54%), Positives = 166/237 (70%), Gaps = 2/237 (0%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R SGR + +R I+L S +AEGSCLV+ G+TH+L TA+++E+VP ++RN+ GW+TA
Sbjct: 3 RPSGRAYDALRSITLESGFSLHAEGSCLVRCGNTHVLCTASVDERVPSFLRNSGKGWVTA 62
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
EYGMLPRST R REA G+QGGR+ EIQR+IGR+LR+V DL ALG RQI IDCDVIQA
Sbjct: 63 EYGMLPRSTHTRSDREAARGKQGGRTLEIQRLIGRSLRAVTDLKALGERQIKIDCDVIQA 122
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
DGGTRTA+ITGAWVAL + + Q + +VAAISCG+ G ++DLDY E
Sbjct: 123 DGGTRTASITGAWVALKIACEKL--LLAGAITRQPIIDNVAAISCGVYKGNSVLDLDYDE 180
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
DS ++DANFVM+ G +VE+Q + E FS+D AML+LA+ A L LQ +
Sbjct: 181 DSNAEIDANFVMSADGGLVEIQATGEEKPFSRDVLNAMLDLAEAGGATLFALQDQAV 237
>gi|254460324|ref|ZP_05073740.1| ribonuclease PH [Rhodobacterales bacterium HTCC2083]
gi|206676913|gb|EDZ41400.1| ribonuclease PH [Rhodobacteraceae bacterium HTCC2083]
Length = 237
Score = 173 bits (438), Expect = 2e-41, Method: Composition-based stats.
Identities = 126/237 (53%), Positives = 170/237 (71%), Gaps = 2/237 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR SGR NQMR++S+ V+K+AEGSC++K GDTH+L TATLE +VP +I+ + GW+T
Sbjct: 1 MRPSGRDLNQMRDVSIETNVTKHAEGSCMIKMGDTHVLCTATLENRVPPFIKGSGLGWVT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPRST +R++REA +G+QGGR+ EIQR+IGR+LR+ VD ALG RQI +DCDVIQ
Sbjct: 61 AEYGMLPRSTTSRMRREATAGKQGGRTVEIQRLIGRSLRAGVDRVALGERQITVDCDVIQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTR A+ITG WVAL + + S L VAAISCG+ G P++DLDY
Sbjct: 121 ADGGTRCASITGGWVALKLAVNKLIKA--GEITSDPLISPVAAISCGIYAGQPVLDLDYP 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
EDS VD NF+M +G ++E Q SAE +T+S+D +++LA+ +++L +Q
Sbjct: 179 EDSEAGVDGNFIMLANGQMIETQMSAEGSTYSRDQMNQLIDLAEKGVSELAAMQLAA 235
>gi|25028957|ref|NP_739011.1| ribonuclease PH [Corynebacterium efficiens YS-314]
gi|259508022|ref|ZP_05750922.1| tRNA nucleotidyltransferase [Corynebacterium efficiens YS-314]
gi|61216064|sp|Q8FMU8|RNPH_COREF RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|23494244|dbj|BAC19211.1| putative ribonuclease [Corynebacterium efficiens YS-314]
gi|259164363|gb|EEW48917.1| tRNA nucleotidyltransferase [Corynebacterium efficiens YS-314]
Length = 245
Score = 173 bits (438), Expect = 2e-41, Method: Composition-based stats.
Identities = 109/238 (45%), Positives = 157/238 (65%), Gaps = 2/238 (0%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R GR ++QMR + +TR + GS L++FG+T ++ TA++E VP + R++ GW+TA
Sbjct: 9 RADGRAQDQMRTVKITRGFTTNPAGSVLIEFGNTRVMCTASVELGVPRFKRDSGEGWLTA 68
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
EY MLP +T R +RE+++G+ GR+ EI R+IGR+LR+ VDLS LG I IDCDV+QA
Sbjct: 69 EYAMLPAATAERNRRESMAGKVKGRTHEISRLIGRSLRAAVDLSQLGENTIAIDCDVLQA 128
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
DGGTRTAAITGA+VAL D ++ +++ L VAA+S G++ G P +DL Y E
Sbjct: 129 DGGTRTAAITGAYVALADAIRVLKE--QGVVPGDPLLPPVAAVSVGLIDGQPCLDLPYEE 186
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
D DVD N VMT+SG VE+QG+ E TF++ ML++A+ +L+ QK +
Sbjct: 187 DVRADVDMNVVMTESGEFVEIQGTGEETTFTRAQLNEMLDIAEKGCRELVHAQKAALG 244
>gi|310826563|ref|YP_003958920.1| ribonuclease PH [Eubacterium limosum KIST612]
gi|308738297|gb|ADO35957.1| ribonuclease PH [Eubacterium limosum KIST612]
Length = 240
Score = 173 bits (438), Expect = 2e-41, Method: Composition-based stats.
Identities = 115/238 (48%), Positives = 162/238 (68%), Gaps = 2/238 (0%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R+ GR +R +S+TR ++ A+G+ L++ G+T ++ TA +E+KVP ++R K GW+TA
Sbjct: 3 RIDGRSNECLRPVSITRHFTRNAQGAVLIEVGNTKVICTAMVEDKVPPFLRGEKKGWVTA 62
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
EY MLP STG+R R+ G+ GR+ EIQR+IGR+LRSV+D+ LG R I IDCDVIQA
Sbjct: 63 EYEMLPSSTGSRKGRDRSRGKIDGRTVEIQRLIGRSLRSVIDMEKLGERTIWIDCDVIQA 122
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
DGGTRTA+ITGA+VAL+D + + + + G+VAA S G+ PI+DL Y E
Sbjct: 123 DGGTRTASITGAFVALYDAVTWLMEEE--IIDEWPINGYVAATSVGINQNEPIMDLCYEE 180
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
DST +VD N VMTD G IVE+QG+ E F++D F +L L +D + LI +QK+ +
Sbjct: 181 DSTAEVDMNIVMTDEGEIVEIQGTGEERPFTRDEFQKLLALGEDGVYQLINIQKEALG 238
>gi|299144136|ref|ZP_07037216.1| ribonuclease PH/Ham1 protein [Peptoniphilus sp. oral taxon 386 str.
F0131]
gi|298518621|gb|EFI42360.1| ribonuclease PH/Ham1 protein [Peptoniphilus sp. oral taxon 386 str.
F0131]
Length = 438
Score = 173 bits (438), Expect = 2e-41, Method: Composition-based stats.
Identities = 100/244 (40%), Positives = 152/244 (62%), Gaps = 5/244 (2%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR R+ ++MR I L + +GS L+K G+T ++ TA +E+KVP +++ GW++
Sbjct: 1 MR-DNRKFDEMRNIELELNYTSAPDGSVLIKCGNTKVICTAMIEDKVPFFLKGKNSGWLS 59
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
EY MLP ST R R+ G+ GRSQEIQR+IGR+LRS VDLS +G + I IDCDVI
Sbjct: 60 CEYSMLPGSTSVRKVRDISRGKLDGRSQEIQRLIGRSLRSCVDLSKIGEKTIWIDCDVIS 119
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRT +I G+++AL +++ L +K VAAIS G++ ++DL+Y
Sbjct: 120 ADGGTRTTSINGSFIALSLAVKN--AIRQGIILENPIKNKVAAISVGIVENEKLLDLNYD 177
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI-- 238
EDS VD N VM D+ I+E+QG+AE +FS+ +++L++ I ++ +Q V+
Sbjct: 178 EDSNAQVDLNVVMNDNKEIIEIQGTAEGRSFSRKELNELIDLSEIAIDNIFNIQNKVLLD 237
Query: 239 SNEV 242
++
Sbjct: 238 KEKI 241
>gi|296118694|ref|ZP_06837270.1| tRNA nucleotidyltransferase [Corynebacterium ammoniagenes DSM
20306]
gi|295968183|gb|EFG81432.1| tRNA nucleotidyltransferase [Corynebacterium ammoniagenes DSM
20306]
Length = 242
Score = 173 bits (438), Expect = 2e-41, Method: Composition-based stats.
Identities = 107/238 (44%), Positives = 158/238 (66%), Gaps = 2/238 (0%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R GR +Q+R + +TR + GS LV+FG+T ++ TA++E+ VP + +++ GW+TA
Sbjct: 6 RADGRDLDQLRSVRITRNFTTNPAGSVLVEFGNTRVMCTASVEQGVPRFKKDSGEGWLTA 65
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
EY MLP +T +R+ RE++ G+ GR+ EI R+IGR+LR+ VDLSALG I +DCDV+QA
Sbjct: 66 EYAMLPSATHDRMPRESMKGKVKGRTHEISRLIGRSLRAAVDLSALGENTIQLDCDVLQA 125
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
DGGTRTA+ITGA+VAL D + +++ + L +AA+S GM+ G +DL Y E
Sbjct: 126 DGGTRTASITGAYVALADAIAVLKE--QGVVPGEPLLQPIAAVSVGMVEGNVCLDLPYEE 183
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
DS +VD N VM +SG+ VEVQG+ E F +D AML++A+ +LI Q+ +
Sbjct: 184 DSRAEVDLNVVMQESGNFVEVQGTGENGLFGRDELNAMLDVAQKGCVELIAAQRAALG 241
>gi|119962182|ref|YP_948291.1| ribonuclease PH [Arthrobacter aurescens TC1]
gi|119949041|gb|ABM07952.1| ribonuclease PH [Arthrobacter aurescens TC1]
Length = 252
Score = 173 bits (438), Expect = 2e-41, Method: Composition-based stats.
Identities = 115/240 (47%), Positives = 163/240 (67%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+R GR +Q+R IS+TR SK AEGS L++FG+T +L TA+L E VP W++ GW+T
Sbjct: 11 IRADGRTPDQLRPISITRGWSKQAEGSALIEFGNTRVLCTASLTEGVPRWLKGEGRGWVT 70
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEY MLPR+T R RE+V G+ GGR+ EI R+IGR+LRS++D ALG I++DCDV+Q
Sbjct: 71 AEYAMLPRATNTRSDRESVKGKIGGRTHEISRLIGRSLRSIIDTKALGENTIVLDCDVLQ 130
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTAAITGA+VAL + ++ + + ++ L +AA+S G++ G P++DL Y
Sbjct: 131 ADGGTRTAAITGAYVALAEAIRFARENKLIARNAEPLVDTIAAVSVGIIDGVPMLDLPYV 190
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
ED + D N V+T SG VEVQG+AE A F +D A+L+LA L +Q++ ++
Sbjct: 191 EDVRAETDMNVVVTGSGKFVEVQGTAEGAPFDRDELNALLDLALLGTTQLSAIQRETLAE 250
>gi|113461435|ref|YP_719504.1| ribonuclease PH [Haemophilus somnus 129PT]
gi|123132220|sp|Q0I4U1|RNPH_HAES1 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|112823478|gb|ABI25567.1| RNAse PH [Haemophilus somnus 129PT]
Length = 238
Score = 173 bits (438), Expect = 2e-41, Method: Composition-based stats.
Identities = 119/240 (49%), Positives = 162/240 (67%), Gaps = 2/240 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR + R NQ R I +TR +K+AEGS LV+FG+T ++ TAT+E+ VP +++ GW+T
Sbjct: 1 MRPNARAINQPRPIKITRHYTKHAEGSVLVEFGETKVICTATVEDSVPRFLKGQGKGWVT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPRST +R++REA G+QGGR+ EIQR+I R+LR++VDL ALG R I +DCDVIQ
Sbjct: 61 AEYGMLPRSTHSRMQREAAKGKQGGRTMEIQRLIARSLRAMVDLEALGERAITLDCDVIQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+ITGA VAL D + + + +KG VAAIS G++ G + DL+Y
Sbjct: 121 ADGGTRTASITGACVALIDAINFLLKN--GTLTTNPIKGLVAAISVGIVNGETVCDLEYV 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
EDS + D N VM + G ++EVQG+AE FS +L+LAK L Q+ ++
Sbjct: 179 EDSIAETDMNVVMMEDGRMIEVQGTAEGEPFSHAELLTLLDLAKQGCEQLFVAQRVALAE 238
>gi|302877637|ref|YP_003846201.1| ribonuclease PH [Gallionella capsiferriformans ES-2]
gi|302580426|gb|ADL54437.1| ribonuclease PH [Gallionella capsiferriformans ES-2]
Length = 238
Score = 173 bits (437), Expect = 2e-41, Method: Composition-based stats.
Identities = 130/239 (54%), Positives = 171/239 (71%), Gaps = 2/239 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR S RQ NQ+REI +TR +K+AEGS L++ GDT ++ TA++EE+VP + + GW+T
Sbjct: 1 MRPSSRQANQLREIRITRHYTKHAEGSVLIECGDTKVICTASVEERVPPHKKGSGEGWVT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPRSTG+R++REA G+Q GR+QEIQR+IGR+LR+VVDL LG R I IDCDVIQ
Sbjct: 61 AEYGMLPRSTGSRMQREAAKGKQSGRTQEIQRLIGRSLRAVVDLKKLGERTIQIDCDVIQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+ITGA+VAL D + + + + +AAIS G+ G P++DLDY
Sbjct: 121 ADGGTRTASITGAYVALQDAVSSLIEK--GLLTETPVTDAIAAISVGIYQGTPVLDLDYL 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
EDS D D N VM SGH VEVQG+AE FS+ +L LA++ I DLIK+Q+ ++
Sbjct: 179 EDSACDTDMNVVMLGSGHFVEVQGTAEGHAFSRVEMDQLLELAQNGIVDLIKMQQAALA 237
>gi|241760285|ref|ZP_04758380.1| tRNA nucleotidyltransferase [Neisseria flavescens SK114]
gi|241319163|gb|EER55641.1| tRNA nucleotidyltransferase [Neisseria flavescens SK114]
Length = 242
Score = 173 bits (437), Expect = 2e-41, Method: Composition-based stats.
Identities = 115/234 (49%), Positives = 167/234 (71%), Gaps = 2/234 (0%)
Query: 5 GRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYG 64
GR + +R I +T +A+GSCL++ G+T ++ TA+++E VP ++R + GW+TAEYG
Sbjct: 8 GRAADSLRNIKITPNFLPHADGSCLIECGNTKVICTASIDENVPPFLRGKEQGWVTAEYG 67
Query: 65 MLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGG 124
MLP ST +R++REA +G+Q GR+QEIQR+IGR+LR+VVD+ LG RQI+IDCDVIQADGG
Sbjct: 68 MLPASTASRMRREAAAGKQSGRTQEIQRLIGRSLRAVVDMEKLGERQILIDCDVIQADGG 127
Query: 125 TRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDST 184
TRTA+ITGA+VAL + + S+ ++ VAA+S G++ G P++DLDY EDS
Sbjct: 128 TRTASITGAYVALQIAVDKL--LSDGLISENPIREAVAAVSAGVVGGVPLLDLDYPEDSG 185
Query: 185 IDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
D D N +MT SG I+E+QG+AE A FS + ++ LA IA+L++ Q+ +
Sbjct: 186 CDSDVNIIMTASGKIIEIQGTAEGAPFSIEELGKLIALAHKGIAELVQHQQAAL 239
>gi|293390938|ref|ZP_06635272.1| ribonuclease PH [Aggregatibacter actinomycetemcomitans D7S-1]
gi|290951472|gb|EFE01591.1| ribonuclease PH [Aggregatibacter actinomycetemcomitans D7S-1]
Length = 238
Score = 173 bits (437), Expect = 2e-41, Method: Composition-based stats.
Identities = 122/240 (50%), Positives = 165/240 (68%), Gaps = 2/240 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR + R +Q R I +TR +K+AEGS LV+FGDT +L TA++EE VP +++ GW+T
Sbjct: 1 MRPNQRANHQPRPIQITRHYTKHAEGSVLVEFGDTKVLCTASVEESVPRFLKGQGQGWVT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPRST +R++REA G+QGGR+ EIQR+I R+LR++VDL ALG R I +DCDVIQ
Sbjct: 61 AEYGMLPRSTHSRMQREAAKGKQGGRTLEIQRLIARSLRAMVDLEALGERCITLDCDVIQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+ITGA VAL D L + +N LKG VAAIS G++ G + DL+Y
Sbjct: 121 ADGGTRTASITGACVALCDALNSLV--TNGTLAKNPLKGLVAAISVGIVNGEAVCDLEYV 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
EDS + D N VM + G ++EVQG+AE FS + +L+LAK + + Q+ ++
Sbjct: 179 EDSAAETDMNVVMMEDGRMIEVQGTAEGEPFSHEELLTLLDLAKQGCDMIFQTQRATLAE 238
>gi|89067431|ref|ZP_01154944.1| ribonuclease PH [Oceanicola granulosus HTCC2516]
gi|89047000|gb|EAR53054.1| ribonuclease PH [Oceanicola granulosus HTCC2516]
Length = 236
Score = 173 bits (437), Expect = 2e-41, Method: Composition-based stats.
Identities = 128/239 (53%), Positives = 171/239 (71%), Gaps = 3/239 (1%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR SGR QMR +++ V+K+AEGSCL+K GDTH+L TA++E++ P ++RNT GW+T
Sbjct: 1 MRPSGRDLGQMRPVTIETGVTKHAEGSCLIKMGDTHVLCTASIEDRPPPFLRNTGLGWVT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPRSTG+R++REA +G+QGGR+ EIQR+IGR+LR+ V+ +ALG RQI +DCDV+Q
Sbjct: 61 AEYGMLPRSTGSRMRREATAGKQGGRTVEIQRLIGRSLRAGVERAALGERQITVDCDVLQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTR A+ITG WVAL + + S L V+A+SCG+ G P++DLDY
Sbjct: 121 ADGGTRCASITGGWVALRLAVNKL--MQAGDVTSDPLGDPVSAVSCGIYAGQPVLDLDYP 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
EDS VD NFVMT G ++EVQ SAE ATFS+D +L LA+ + +L LQ +
Sbjct: 179 EDSVAGVDGNFVMTG-GRMIEVQMSAEGATFSRDELEQLLGLAERGVGELAALQLAAVG 236
>gi|172058161|ref|YP_001814621.1| ribonuclease PH [Exiguobacterium sibiricum 255-15]
gi|226736909|sp|B1YJW6|RNPH_EXIS2 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|171990682|gb|ACB61604.1| ribonuclease PH [Exiguobacterium sibiricum 255-15]
Length = 250
Score = 173 bits (437), Expect = 2e-41, Method: Composition-based stats.
Identities = 118/239 (49%), Positives = 155/239 (64%), Gaps = 2/239 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MRL R ++ MR+I L V+K+AEGS L+ GDT +L TAT+EEKVP ++R +HGWI
Sbjct: 1 MRLDQRAQSDMRKIQLETDVNKHAEGSVLISVGDTRVLCTATVEEKVPPFLRGKRHGWIN 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEY MLPR+T R REAV G+Q GR+ EIQR+I RALRSVV+L LG R + IDCDV+Q
Sbjct: 61 AEYAMLPRATAQRTGREAVRGKQTGRTMEIQRLISRALRSVVNLEKLGERTVWIDCDVLQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTAAITG ++AL + + +K +AA+S G + ++DL Y
Sbjct: 121 ADGGTRTAAITGGFLALVLAVDGLIQS--GKLTDTPIKEGIAAVSVGKVGTELLLDLCYE 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
ED+ DVD N VMT SG IVE+Q + E ATFS+ ML L + I +L+ + +
Sbjct: 179 EDAAADVDLNLVMTSSGKIVELQATGEEATFSRKEMLDMLELGEKGIEELLHAAEQSLG 237
>gi|257069148|ref|YP_003155403.1| RNAse PH [Brachybacterium faecium DSM 4810]
gi|256559966|gb|ACU85813.1| RNAse PH [Brachybacterium faecium DSM 4810]
Length = 252
Score = 173 bits (437), Expect = 3e-41, Method: Composition-based stats.
Identities = 115/240 (47%), Positives = 160/240 (66%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R+ GR +Q+RE+ +TR +AEGS L++FG T +L A+ VP W + + GW+TA
Sbjct: 12 RIDGRTPDQLREVRITRGWLDHAEGSALIEFGRTRVLCAASFTAGVPRWKQGSGSGWVTA 71
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
EY MLPR+T +R RE+V G+ GGR+ EI R+IGR+LR+V+DL ALG I +DCDV+QA
Sbjct: 72 EYAMLPRATNSRSPRESVKGKIGGRTHEISRLIGRSLRAVIDLDALGENTIQLDCDVLQA 131
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
DGGTRTAAITGA+VAL D + + + +QVL V+AIS G++ P++DL+Y E
Sbjct: 132 DGGTRTAAITGAYVALADAISWGKQHTALPAAAQVLTDSVSAISVGIVDDRPLLDLEYRE 191
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
D D N V+T SG VEVQG+AE A F + A+L+LA A L + Q+DV++ +
Sbjct: 192 DVAAGTDMNVVVTGSGSFVEVQGTAEGAPFDRAELGALLDLATGGCAQLAQTQQDVLAQQ 251
>gi|117928891|ref|YP_873442.1| ribonuclease PH [Acidothermus cellulolyticus 11B]
gi|117649354|gb|ABK53456.1| RNAse PH [Acidothermus cellulolyticus 11B]
Length = 240
Score = 173 bits (437), Expect = 3e-41, Method: Composition-based stats.
Identities = 109/240 (45%), Positives = 150/240 (62%), Gaps = 2/240 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+R+ GR +++R + TR +AEGS LV+FG T +L A++ E VP W + T GW+T
Sbjct: 2 LRVDGRAADELRPVRFTRGWLLHAEGSVLVEFGRTRVLCAASVLEGVPKWRKGTGLGWVT 61
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
EY MLPR+T R RE+V GR GGR+QEI R++GR+LR+ V+ + LG + +DCDV+Q
Sbjct: 62 GEYAMLPRATTTRTDRESVRGRLGGRTQEISRLVGRSLRACVEPARLGENTVHLDCDVLQ 121
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTAAITGA++AL D + M D V VAA+S G++ G P++DL Y
Sbjct: 122 ADGGTRTAAITGAYLALADACRWMRDHGWVTSDPLVRS--VAAVSVGIVDGVPVLDLCYD 179
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
ED D N VMT G VE+QG+AE +D A+L LA A L +LQ+ ++
Sbjct: 180 EDVRAGTDMNVVMTGDGDFVEIQGTAEGTPLRRDEVDALLELATRGCARLTELQRTALAE 239
>gi|85060191|ref|YP_455893.1| ribonuclease PH [Sodalis glossinidius str. 'morsitans']
gi|123518740|sp|Q2NQT7|RNPH_SODGM RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|84780711|dbj|BAE75488.1| ribonuclease PH [Sodalis glossinidius str. 'morsitans']
Length = 239
Score = 173 bits (437), Expect = 3e-41, Method: Composition-based stats.
Identities = 120/238 (50%), Positives = 161/238 (67%), Gaps = 2/238 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR +GR Q+R +++TR +++AEGS L+ FGDT +L TA++EE VP +++ GWIT
Sbjct: 1 MRPAGRSVQQVRPVTITRHFTRHAEGSVLIAFGDTRVLCTASVEEGVPRFLKGQGQGWIT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPR+T R REA G+QGGR+ EIQR+I R+LR+ VDL+ LG I +DCDVIQ
Sbjct: 61 AEYGMLPRATHTRNPREAAKGKQGGRTLEIQRLIARSLRAAVDLTKLGEYTITLDCDVIQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+ITGA VAL D L M+ + +KG VAAIS G++ G + DL+Y
Sbjct: 121 ADGGTRTASITGACVALADALSSMQKK--GQLKTNPMKGFVAAISVGIVAGEAVCDLEYV 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
EDS + D N VM + G ++EVQG+AE FSQ +L LA+ I L++ QK +
Sbjct: 179 EDSAAETDMNVVMMEDGRMIEVQGTAEGEPFSQQELNTLLELARGGIDSLVQAQKAAL 236
>gi|229087047|ref|ZP_04219199.1| Ribonuclease PH [Bacillus cereus Rock3-44]
gi|228696240|gb|EEL49073.1| Ribonuclease PH [Bacillus cereus Rock3-44]
Length = 245
Score = 173 bits (437), Expect = 3e-41, Method: Composition-based stats.
Identities = 112/243 (46%), Positives = 160/243 (65%), Gaps = 3/243 (1%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR+ GR+ ++R I L K+ EGS L++ GDT ++ +AT+EE+VP ++R GW+T
Sbjct: 1 MRVDGREAAELRHIHLHTNYLKHPEGSVLIEVGDTKVICSATIEERVPPFMRGEGKGWVT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEY M+PR+T R RE+ G+ GR+ EIQR+IGRALR+VVDL ALG R + IDCDVIQ
Sbjct: 61 AEYAMIPRATEQRTIRESSKGKVTGRTMEIQRLIGRALRAVVDLEALGERTVWIDCDVIQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY-PIVDLDY 179
ADGGTRTA+ITGA+VA+ + + + +K ++AA S G++ ++DL+Y
Sbjct: 121 ADGGTRTASITGAYVAMVLAFEKL--LQAEKVSKIPVKDYLAATSVGIVEDQGVVLDLNY 178
Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
EDS DVD N +MT G VEVQG+ E ATFS+ +L+ A+ I L++ QK+ +
Sbjct: 179 AEDSKADVDMNVIMTGKGQFVEVQGTGEEATFSRAELNELLDAAEHGILQLVEKQKEALG 238
Query: 240 NEV 242
+ V
Sbjct: 239 DIV 241
>gi|306836769|ref|ZP_07469730.1| tRNA nucleotidyltransferase [Corynebacterium accolens ATCC 49726]
gi|304567356|gb|EFM42960.1| tRNA nucleotidyltransferase [Corynebacterium accolens ATCC 49726]
Length = 242
Score = 173 bits (437), Expect = 3e-41, Method: Composition-based stats.
Identities = 104/238 (43%), Positives = 154/238 (64%), Gaps = 2/238 (0%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R GR +QMR + +TR + GS LV+FG+T ++ TA++E VP + R++ GW+TA
Sbjct: 6 RADGRALDQMRSVRITRNFTTNPAGSVLVEFGNTRVMCTASVELGVPRFKRDSGEGWLTA 65
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
EY MLP +T +R+ RE++ G+ GR+ EI R++GR+LR+ VDL LG I +DCDV+QA
Sbjct: 66 EYAMLPSATHDRMPRESMRGKVKGRTHEISRLVGRSLRAAVDLEELGENTIQLDCDVLQA 125
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
DGGTRTA+ITGA+VAL D + H++ + L +AA+S G++ G +DL Y E
Sbjct: 126 DGGTRTASITGAYVALADAIAHLKAE--GVVPGEPLLDPIAAVSVGIIDGEICLDLPYEE 183
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
DS +VD N VM +SG VE+QG+ E F ++ ML++A+ ++LI QK +
Sbjct: 184 DSRAEVDLNVVMQESGDFVEIQGTGEHGLFGREQLNGMLDVAQKGCSELIAAQKAALG 241
>gi|317129838|ref|YP_004096120.1| ribonuclease PH [Bacillus cellulosilyticus DSM 2522]
gi|315474786|gb|ADU31389.1| ribonuclease PH [Bacillus cellulosilyticus DSM 2522]
Length = 255
Score = 172 bits (436), Expect = 3e-41, Method: Composition-based stats.
Identities = 114/240 (47%), Positives = 159/240 (66%), Gaps = 3/240 (1%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR GR+ + +R++ + K+ EGS L+ FG+T ++ A++E++VP ++R GWIT
Sbjct: 1 MRHDGRKTDDIRKVDIIPHYIKHPEGSVLISFGETKVICAASIEDRVPPFMRGQGKGWIT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEY MLPR+T R RE+ G+ GR+ EIQR+IGRALRSVVDL A+G R I IDCDVIQ
Sbjct: 61 AEYSMLPRATEQRNIRESAKGKLSGRTMEIQRLIGRALRSVVDLDAIGERTIWIDCDVIQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP-IVDLDY 179
ADGGTRTA++TGA+VA+ L +++ K +K +AAIS G+ G I+DLDY
Sbjct: 121 ADGGTRTASVTGAFVAMALALHKLKEA--KQIKKFPIKHFLAAISVGVNEGNIAILDLDY 178
Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
EDS +VD N +MT + VE+QG+ E ATFS+ ML+LA+ I +L QK+ +
Sbjct: 179 IEDSKANVDMNIIMTGNSEFVEIQGTGEEATFSRKQLNEMLDLAELGINELFLHQKEALG 238
>gi|319778262|ref|YP_004129175.1| Ribonuclease PH [Taylorella equigenitalis MCE9]
gi|317108286|gb|ADU91032.1| Ribonuclease PH [Taylorella equigenitalis MCE9]
Length = 251
Score = 172 bits (436), Expect = 3e-41, Method: Composition-based stats.
Identities = 115/238 (48%), Positives = 160/238 (67%), Gaps = 2/238 (0%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R GR NQ+R +S+TR + YAEGS L+K G TH+L A++ KVP +++ GW+TA
Sbjct: 8 RSDGRSNNQIRNVSITRNYTPYAEGSVLIKVGQTHVLCNASVLPKVPPFLKGQGTGWVTA 67
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
EYGMLPR+T +R+ REA G+Q GR+QEIQR+IGR+LR+ +DL+ALG I IDCDVIQA
Sbjct: 68 EYGMLPRATHDRMDREASKGKQTGRTQEIQRLIGRSLRACIDLAALGEISIHIDCDVIQA 127
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
DGGTR A+ITGAWVAL+D + + S + + AIS G++ ++DLDY E
Sbjct: 128 DGGTRCASITGAWVALYDAINKCIER--GLIQSNPIHQQIVAISVGVVGDGLLLDLDYSE 185
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
DS + D N VMT + VE+QG+AE TFS+D +L+LA+ L+++Q + +
Sbjct: 186 DSNCESDINVVMTSNKTFVEIQGTAEGETFSRDSLNQLLDLAQFGCDQLLRVQLESLG 243
>gi|170718459|ref|YP_001783675.1| ribonuclease PH [Haemophilus somnus 2336]
gi|189043765|sp|B0UWM2|RNPH_HAES2 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|168826588|gb|ACA31959.1| ribonuclease PH [Haemophilus somnus 2336]
Length = 238
Score = 172 bits (436), Expect = 3e-41, Method: Composition-based stats.
Identities = 120/240 (50%), Positives = 163/240 (67%), Gaps = 2/240 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR + R NQ R I +TR +K+AEGS LV+FG+T ++ TAT+E+ VP +++ GW+T
Sbjct: 1 MRPNARAINQPRPIKITRHYTKHAEGSVLVEFGETKVICTATVEDSVPRFLKGQGKGWVT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPRST +R++REA G+QGGR+ EIQR+I R+LR++VDL ALG R I +DCDVIQ
Sbjct: 61 AEYGMLPRSTHSRMQREAAKGKQGGRTMEIQRLIARSLRAMVDLEALGERAITLDCDVIQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+ITGA VAL D + + N + +KG VAAIS G++ G + DL+Y
Sbjct: 121 ADGGTRTASITGACVALIDAINFL--LQNGTLTTNPIKGLVAAISVGIVNGETVCDLEYV 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
EDS + D N VM + G ++EVQG+AE FS +L+LAK L Q+ ++
Sbjct: 179 EDSIAETDMNVVMMEDGRMIEVQGTAEGEPFSHAELLTLLDLAKQGCEQLFVAQRVALAE 238
>gi|225849820|ref|YP_002730054.1| ribonuclease PH [Persephonella marina EX-H1]
gi|254808597|sp|C0QTN9|RNPH_PERMH RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|225646433|gb|ACO04619.1| ribonuclease PH [Persephonella marina EX-H1]
Length = 261
Score = 172 bits (436), Expect = 3e-41, Method: Composition-based stats.
Identities = 118/239 (49%), Positives = 158/239 (66%), Gaps = 2/239 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR GR+ Q+R + + R + YAEGS L++ G+T ++ TA++EEKVP ++R T GWIT
Sbjct: 1 MRPDGRKPTQLRPVKIIRDFNIYAEGSVLIEMGNTKVIITASIEEKVPPFLRGTGQGWIT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEY MLPRST +R RE V G GR+QEIQR+IGR+LR VVDL LG R + +DCDVIQ
Sbjct: 61 AEYAMLPRSTESRSIREVVRGAPSGRTQEIQRLIGRSLRGVVDLKKLGERTLWVDCDVIQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTR A+ITGA++A+ D + + + LK +VAAIS G++ ++DL++
Sbjct: 121 ADGGTRVASITGAFIAVADAMIKLTES--GKVRQNPLKDYVAAISTGIVGNEVVLDLNFK 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
EDS+ VD N VMT SG+ VEVQ + E +F+Q F ML K I LI +QK I
Sbjct: 179 EDSSAKVDMNLVMTGSGNFVEVQATGEEYSFTQQEFDKMLEYGKLGINKLIHIQKKFIE 237
>gi|313894107|ref|ZP_07827673.1| tRNA nucleotidyltransferase [Veillonella sp. oral taxon 158 str.
F0412]
gi|313441671|gb|EFR60097.1| tRNA nucleotidyltransferase [Veillonella sp. oral taxon 158 str.
F0412]
Length = 251
Score = 172 bits (436), Expect = 3e-41, Method: Composition-based stats.
Identities = 121/240 (50%), Positives = 158/240 (65%), Gaps = 4/240 (1%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR R Q+R I +TR ++YAEGS L++ G T ++ TAT+E+ VP W++ + GW+T
Sbjct: 1 MRSDNRTAGQLRPIKITRNFTEYAEGSVLIECGKTKVICTATVEDSVPRWLKGSGQGWVT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEY +LPRST RV REA G+Q GR+ EIQR+IGRALR+VVDL ALG R I IDCDVIQ
Sbjct: 61 AEYSLLPRSTQTRVSREAAKGKQTGRTVEIQRLIGRALRAVVDLEALGERSITIDCDVIQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+ITGA+VAL D D + + AAIS G+ PI DL Y
Sbjct: 121 ADGGTRTASITGAFVALVDA----VDFTFGGAGKFPITDFCAAISVGIGPEGPITDLCYE 176
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
EDS VD N V T SG +VEVQG+ E TF++D A+L+LA+ +L+ Q++ + +
Sbjct: 177 EDSAAIVDMNVVRTGSGDMVEVQGTGEHGTFNRDELNALLDLAEAATDELMAKQREALGS 236
>gi|255308380|ref|ZP_05352551.1| ribonuclease PH [Clostridium difficile ATCC 43255]
Length = 449
Score = 172 bits (436), Expect = 3e-41, Method: Composition-based stats.
Identities = 112/235 (47%), Positives = 156/235 (66%), Gaps = 2/235 (0%)
Query: 6 RQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGM 65
R Q+R + +TR +KYAEGS L++ G+T ++ TA++EEKVP ++RN+ GWI AEY M
Sbjct: 7 RSNEQIRPVKITRDYTKYAEGSVLIEMGETKVICTASVEEKVPPFLRNSGTGWINAEYSM 66
Query: 66 LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125
LPR+T R R+A G+ GR+QEIQR+IGRA+RSVVDL+ LG R I +DCDVIQADGGT
Sbjct: 67 LPRATQQRKIRDASRGKIDGRTQEIQRLIGRAIRSVVDLNKLGERTIWVDCDVIQADGGT 126
Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185
RTA+ITGA+VA+ + + + K + V+AIS G++ G ++DL Y EDS
Sbjct: 127 RTASITGAFVAVAEAIYKLYKA--KTIKEMPITNFVSAISVGIVNGIHMLDLCYEEDSKA 184
Query: 186 DVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
VD N +MTD VEVQG+ E FS+ +L L + +LI+LQ++ +
Sbjct: 185 QVDMNIIMTDKCEFVEVQGTGEEKPFSRADLNLLLELGEKGNKELIRLQREALGE 239
>gi|255102475|ref|ZP_05331452.1| ribonuclease PH [Clostridium difficile QCD-63q42]
Length = 449
Score = 172 bits (436), Expect = 3e-41, Method: Composition-based stats.
Identities = 112/235 (47%), Positives = 156/235 (66%), Gaps = 2/235 (0%)
Query: 6 RQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGM 65
R Q+R + +TR +KYAEGS L++ G+T ++ TA++EEKVP ++RN+ GWI AEY M
Sbjct: 7 RSNEQIRPVKITRDYTKYAEGSVLIEMGETKVICTASVEEKVPPFLRNSGTGWINAEYSM 66
Query: 66 LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125
LPR+T R R+A G+ GR+QEIQR+IGRA+RSVVDL+ LG R I +DCDVIQADGGT
Sbjct: 67 LPRATQQRKIRDASRGKIDGRTQEIQRLIGRAIRSVVDLNKLGERTIWVDCDVIQADGGT 126
Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185
RTA+ITGA+VA+ + + + K + V+AIS G++ G ++DL Y EDS
Sbjct: 127 RTASITGAFVAVAEAIYKLYKA--KTIKEMPITNFVSAISVGIVNGIHMLDLCYEEDSKA 184
Query: 186 DVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
VD N +MTD VEVQG+ E FS+ +L L + +LI+LQ++ +
Sbjct: 185 QVDMNIIMTDKCEFVEVQGTGEEKPFSRADLNLLLELGEKGNKELIRLQREALGE 239
>gi|126700927|ref|YP_001089824.1| ribonuclease PH [Clostridium difficile 630]
gi|115252364|emb|CAJ70205.1| Bifunctional enzyme, tRNA nucleotidyltransferase ;
Nucleoside-triphosphatase [Clostridium difficile]
Length = 449
Score = 172 bits (436), Expect = 3e-41, Method: Composition-based stats.
Identities = 112/235 (47%), Positives = 156/235 (66%), Gaps = 2/235 (0%)
Query: 6 RQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGM 65
R Q+R + +TR +KYAEGS L++ G+T ++ TA++EEKVP ++RN+ GWI AEY M
Sbjct: 7 RSNEQIRPVKITRDYTKYAEGSVLIEMGETKVICTASVEEKVPPFLRNSGTGWINAEYSM 66
Query: 66 LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125
LPR+T R R+A G+ GR+QEIQR+IGRA+RSVVDL+ LG R I +DCDVIQADGGT
Sbjct: 67 LPRATQQRKIRDASRGKIDGRTQEIQRLIGRAIRSVVDLNKLGERTIWVDCDVIQADGGT 126
Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185
RTA+ITGA+VA+ + + + K + V+AIS G++ G ++DL Y EDS
Sbjct: 127 RTASITGAFVAVAEAIYKLYKA--KTIKEMPITNFVSAISVGIVNGIHMLDLCYEEDSKA 184
Query: 186 DVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
VD N +MTD VEVQG+ E FS+ +L L + +LI+LQ++ +
Sbjct: 185 QVDMNIIMTDKCEFVEVQGTGEEKPFSRADLNLLLELGEKGNKELIRLQREALGE 239
>gi|254976907|ref|ZP_05273379.1| ribonuclease PH [Clostridium difficile QCD-66c26]
gi|255316047|ref|ZP_05357630.1| ribonuclease PH [Clostridium difficile QCD-76w55]
gi|255518704|ref|ZP_05386380.1| ribonuclease PH [Clostridium difficile QCD-97b34]
gi|255651826|ref|ZP_05398728.1| ribonuclease PH [Clostridium difficile QCD-37x79]
gi|260684852|ref|YP_003216137.1| ribonuclease Ph [Clostridium difficile CD196]
gi|260688510|ref|YP_003219644.1| ribonuclease Ph [Clostridium difficile R20291]
gi|306521613|ref|ZP_07407960.1| ribonuclease Ph [Clostridium difficile QCD-32g58]
gi|260211015|emb|CBA66330.1| ribonuclease Ph [Clostridium difficile CD196]
gi|260214527|emb|CBE07044.1| ribonuclease Ph [Clostridium difficile R20291]
Length = 449
Score = 172 bits (436), Expect = 3e-41, Method: Composition-based stats.
Identities = 112/235 (47%), Positives = 156/235 (66%), Gaps = 2/235 (0%)
Query: 6 RQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGM 65
R Q+R + +TR +KYAEGS L++ G+T ++ TA++EEKVP ++RN+ GWI AEY M
Sbjct: 7 RSNEQIRPVKITRDYTKYAEGSVLIEMGETKVICTASVEEKVPPFLRNSGTGWINAEYSM 66
Query: 66 LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125
LPR+T R R+A G+ GR+QEIQR+IGRA+RSVVDL+ LG R I +DCDVIQADGGT
Sbjct: 67 LPRATQQRKIRDASRGKIDGRTQEIQRLIGRAIRSVVDLNKLGERTIWVDCDVIQADGGT 126
Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185
RTA+ITGA+VA+ + + + K + V+AIS G++ G ++DL Y EDS
Sbjct: 127 RTASITGAFVAVAEAIYKLYKA--KTIKEMPITNFVSAISVGIVNGIHMLDLCYEEDSKA 184
Query: 186 DVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
VD N +MTD VEVQG+ E FS+ +L L + +LI+LQ++ +
Sbjct: 185 QVDMNIIMTDKCEFVEVQGTGEEKPFSRADLNLLLELGEKGNKELIRLQREALGE 239
>gi|269797499|ref|YP_003311399.1| ribonuclease PH [Veillonella parvula DSM 2008]
gi|269094128|gb|ACZ24119.1| ribonuclease PH [Veillonella parvula DSM 2008]
Length = 251
Score = 172 bits (436), Expect = 3e-41, Method: Composition-based stats.
Identities = 122/240 (50%), Positives = 160/240 (66%), Gaps = 4/240 (1%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR R Q+R I +TR ++YAEGS L++ G T ++ TAT+E+ VP W++ + GW+T
Sbjct: 1 MRSDNRTAGQLRPIKITRNFTEYAEGSVLIECGKTKVICTATVEDSVPRWLKGSGQGWVT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEY +LPRST RV REA G+Q GR+ EIQR+IGRALR+VVDL ALG R I IDCDVIQ
Sbjct: 61 AEYSLLPRSTQTRVSREAAKGKQTGRTVEIQRLIGRALRAVVDLEALGERSITIDCDVIQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+ITGA+VAL D D + + AAIS G+ PI DL Y
Sbjct: 121 ADGGTRTASITGAFVALVDA----VDFTFGGAGKFPITDFCAAISVGIGPEGPITDLCYE 176
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
EDS VD N V T SG++VEVQG+ E TF++D A+L+LA+ +L+ Q++V+ +
Sbjct: 177 EDSAAIVDMNVVRTGSGNMVEVQGTGEHGTFNRDELNALLDLAEAATDELMAKQREVLGS 236
>gi|50955004|ref|YP_062292.1| ribonuclease PH [Leifsonia xyli subsp. xyli str. CTCB07]
gi|61215900|sp|Q6AEK9|RNPH_LEIXX RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|50951486|gb|AAT89187.1| ribonuclease PH [Leifsonia xyli subsp. xyli str. CTCB07]
Length = 251
Score = 172 bits (436), Expect = 3e-41, Method: Composition-based stats.
Identities = 112/239 (46%), Positives = 155/239 (64%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+R GR +Q+R +++ R ++ AEGS LV FG T +L TA+ VP W+ GW+T
Sbjct: 5 IRADGRTADQLRPVTIERAWNRKAEGSALVSFGGTRVLCTASFTNGVPRWMSGKGRGWVT 64
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEY MLPRST +R+ RE+V GR GGR+ EI R+IGR+LR+VVD+ ALG I++DCDV+Q
Sbjct: 65 AEYAMLPRSTNDRMDRESVKGRIGGRTHEISRLIGRSLRAVVDMKALGENTIVLDCDVLQ 124
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTAAITGA+VAL D L+ + Q + L V+A+S G++ G P++DL Y
Sbjct: 125 ADGGTRTAAITGAYVALADALEWGREHRFIGQKAAPLLDSVSAVSVGIVDGSPMLDLAYT 184
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
ED + D N V+T G VEVQG+AE A F + +L+LA L+ +Q ++
Sbjct: 185 EDVRAETDMNVVVTGRGLFVEVQGTAEGAPFDRSELNGLLDLALAGTTALVAVQSAALA 243
>gi|258592582|emb|CBE68891.1| RNase PH [NC10 bacterium 'Dutch sediment']
Length = 258
Score = 172 bits (436), Expect = 3e-41, Method: Composition-based stats.
Identities = 115/242 (47%), Positives = 163/242 (67%), Gaps = 2/242 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+R GR+ +++R + + R ++AEGS L++ G+T +L TAT+EEKVP ++R T GW+T
Sbjct: 14 VRSDGRKIDEIRPVKVDRGYLRHAEGSLLIEVGETRVLCTATVEEKVPPFLRATGQGWVT 73
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPR+T R RE+ +GR GR+ EIQR+IGR+LR+V+DL+ LG R ++IDCDVIQ
Sbjct: 74 AEYGMLPRATKTRTPRESATGRASGRTFEIQRLIGRSLRAVIDLTRLGERTVLIDCDVIQ 133
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRT AITGA+VA+ D L +++ K VA IS G + G ++DL+Y
Sbjct: 134 ADGGTRTTAITGAFVAMADALSRLQENGQLKGPLL--KDFVAGISIGYVDGELLLDLNYA 191
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
EDS DVD N VMT + VEVQG+AE + + ML+LA I L+ LQ+ ++
Sbjct: 192 EDSMADVDMNVVMTGARKFVEVQGTAEEVPYDKAQLDRMLDLATRGIDQLVDLQRQLLGT 251
Query: 241 EV 242
++
Sbjct: 252 DI 253
>gi|326385028|ref|ZP_08206700.1| ribonuclease PH [Gordonia neofelifaecis NRRL B-59395]
gi|326196242|gb|EGD53444.1| ribonuclease PH [Gordonia neofelifaecis NRRL B-59395]
Length = 252
Score = 172 bits (436), Expect = 3e-41, Method: Composition-based stats.
Identities = 113/239 (47%), Positives = 158/239 (66%), Gaps = 1/239 (0%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R GR ++++R I TR + + GS LV+FG+T ++ TA++ E VP W R + GW+TA
Sbjct: 4 RADGRADDELRPIKFTRGFTSHPAGSVLVEFGNTRVMCTASVTEGVPSWRRGSGLGWLTA 63
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
EY MLP +T R KRE+V G+ GGR+ EI R+IGR+LR+ +DL+ALG I IDCDV+QA
Sbjct: 64 EYSMLPAATHERSKRESVRGKIGGRTHEISRLIGRSLRACIDLAALGENTIAIDCDVLQA 123
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
DGGTRTAAITGA+VAL D K Q L +AA+S G++ G +DL Y E
Sbjct: 124 DGGTRTAAITGAYVALADA-VTYLGAGGKLADPQPLSCIIAAVSVGVVDGRVRLDLPYEE 182
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
DS +VD N V TD+G +VEVQG+ E ATF++ ML++A I +++ Q++V++
Sbjct: 183 DSRAEVDMNVVATDAGTLVEVQGTGEGATFARGTLDKMLDVACAGIENIVAAQREVLAQ 241
>gi|227502998|ref|ZP_03933047.1| ribonuclease PH [Corynebacterium accolens ATCC 49725]
gi|227076059|gb|EEI14022.1| ribonuclease PH [Corynebacterium accolens ATCC 49725]
Length = 242
Score = 172 bits (436), Expect = 3e-41, Method: Composition-based stats.
Identities = 104/238 (43%), Positives = 154/238 (64%), Gaps = 2/238 (0%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R GR +QMR + +TR + GS LV+FG+T ++ TA++E VP + R++ GW+TA
Sbjct: 6 RADGRALDQMRSVRITRNFTTNPAGSVLVEFGNTRVMCTASVELGVPRFKRDSGEGWLTA 65
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
EY MLP +T +R+ RE++ G+ GR+ EI R++GR+LR+ VDL LG I +DCDV+QA
Sbjct: 66 EYAMLPSATHDRMPRESMRGKVKGRTHEISRLVGRSLRAAVDLEELGENTIQLDCDVLQA 125
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
DGGTRTA+ITGA+VAL D + H++ + L +AA+S G++ G +DL Y E
Sbjct: 126 DGGTRTASITGAYVALADAIAHLKSE--GVVPGEPLLDPIAAVSVGIIDGEICLDLPYEE 183
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
DS +VD N VM +SG VE+QG+ E F ++ ML++A+ ++LI QK +
Sbjct: 184 DSRAEVDLNVVMQESGDFVEIQGTGEHGLFGREQLNGMLDVAQKGCSELIAAQKAALG 241
>gi|119475382|ref|ZP_01615735.1| ribonuclease PH [marine gamma proteobacterium HTCC2143]
gi|119451585|gb|EAW32818.1| ribonuclease PH [marine gamma proteobacterium HTCC2143]
Length = 239
Score = 172 bits (436), Expect = 3e-41, Method: Composition-based stats.
Identities = 124/238 (52%), Positives = 164/238 (68%), Gaps = 2/238 (0%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R SGR +Q+REI++TR + +AEGS LV FGDT ++ TA++E+ VP ++R T GWITA
Sbjct: 3 RPSGRSIDQLREITITRNFTCHAEGSVLVTFGDTKVICTASVEKNVPHFLRGTGQGWITA 62
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
EYGMLPRSTG+R+ REA G+QGGR+ EIQR+IGR+LR+ VDL LG QI IDCDVIQA
Sbjct: 63 EYGMLPRSTGDRMGREAARGKQGGRTVEIQRLIGRSLRAAVDLKVLGENQITIDCDVIQA 122
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
DGGTRTA+ITGA VAL D + M + LK +AA+S G+ G ++DLDY E
Sbjct: 123 DGGTRTASITGACVALVDAITAMRE--QGIITGNPLKHMIAAVSVGIYQGTAVLDLDYAE 180
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
DS + D N +MT+ G +EVQG+AE +S+ +L LA I LI+ Q+ ++
Sbjct: 181 DSNAETDMNVIMTEQGGFIEVQGTAEGEPYSRIELDQLLGLADAGIQTLIEKQRVALA 238
>gi|227494822|ref|ZP_03925138.1| ribonuclease PH [Actinomyces coleocanis DSM 15436]
gi|226831274|gb|EEH63657.1| ribonuclease PH [Actinomyces coleocanis DSM 15436]
Length = 246
Score = 172 bits (436), Expect = 3e-41, Method: Composition-based stats.
Identities = 115/242 (47%), Positives = 160/242 (66%), Gaps = 3/242 (1%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R GR NQ+R + +TR AEGSCL++FG+T +L A+L E VP W + + GW+TA
Sbjct: 5 RADGRANNQLRPVKITRNWIANAEGSCLIEFGNTRVLCVASLTEGVPRWRQGSGEGWVTA 64
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
EY MLPR+T R +RE+V G+ GGR+ EI R+IGR+LR+VVD ++LG I++DCDV+QA
Sbjct: 65 EYSMLPRATSQRSQRESVKGKIGGRTHEISRLIGRSLRAVVDTASLGENTIVLDCDVLQA 124
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQL---SQVLKGHVAAISCGMLCGYPIVDLD 178
DGGTRTA+ITGA+VAL D ++ + +VLK VAAIS G++ G P +DL
Sbjct: 125 DGGTRTASITGAYVALADAIKWGQKNGLIPLDKAHQKVLKDSVAAISVGIIDGEPRLDLP 184
Query: 179 YGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
Y ED + D N V+T SG +EVQG+AE A F++ A+L+LA+ +L Q+ +
Sbjct: 185 YEEDVRAETDMNVVVTGSGEFIEVQGTAEHAPFTRAELGALLDLAEGGCKELAVFQEVAL 244
Query: 239 SN 240
S
Sbjct: 245 SE 246
>gi|239817292|ref|YP_002946202.1| ribonuclease PH [Variovorax paradoxus S110]
gi|239803869|gb|ACS20936.1| ribonuclease PH [Variovorax paradoxus S110]
Length = 243
Score = 172 bits (436), Expect = 3e-41, Method: Composition-based stats.
Identities = 123/240 (51%), Positives = 168/240 (70%), Gaps = 2/240 (0%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R GR +Q+R + +TR + +AEGS L++FG T +L TA++EE+VP R + GW+TA
Sbjct: 6 RSGGRAADQLRPVRITRGFTIHAEGSVLIEFGQTRVLCTASVEERVPPHKRGSGEGWVTA 65
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
EYGMLPR+T R REA G+Q GR+QEIQR+IGR++R+V DL+ALG R I +DCDV+QA
Sbjct: 66 EYGMLPRATHTRSDREAARGKQSGRTQEIQRLIGRSMRAVFDLAALGERTIHLDCDVLQA 125
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
DGGTRTAAITGA+VA D + + ++GHVAAIS G++ G P++DL+Y E
Sbjct: 126 DGGTRTAAITGAFVAAQDAVNKLLAAGTIPAS--PIRGHVAAISVGIVAGTPLLDLEYTE 183
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
DS D D N VMT +GH VEVQG+AE A FS++ +L LA+ I +LI LQ+ + ++
Sbjct: 184 DSACDTDMNVVMTGAGHFVEVQGTAEGAAFSREEMNLLLGLAEKGIGELIVLQQQSLVSK 243
>gi|218232088|ref|YP_002369288.1| ribonuclease PH [Bacillus cereus B4264]
gi|226736886|sp|B7HEB3|RNPH_BACC4 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|218160045|gb|ACK60037.1| tRNA nucleotidyltransferase [Bacillus cereus B4264]
Length = 245
Score = 172 bits (436), Expect = 4e-41, Method: Composition-based stats.
Identities = 112/243 (46%), Positives = 161/243 (66%), Gaps = 3/243 (1%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR+ GR++ ++R I + K+ EGS L++ GDT ++ +AT+EE+VP ++R GW+T
Sbjct: 1 MRVDGREKIELRHIHIHTNYLKHPEGSVLIEVGDTKVICSATIEERVPPFMRGEGKGWVT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEY M+PR+T R RE+ G+ GR+ EIQR+IGRALR+VVDL ALG R + IDCDVIQ
Sbjct: 61 AEYAMIPRATEQRTIRESSKGKVTGRTMEIQRLIGRALRAVVDLEALGERTVWIDCDVIQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY-PIVDLDY 179
ADGGTRTA+ITGA+VA+ + + + +K ++AA S G++ ++DL+Y
Sbjct: 121 ADGGTRTASITGAYVAMVLAFEKL--LQAEKVSKIPVKDYLAATSVGIVEEQGVVLDLNY 178
Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
EDS DVD N +MT G VEVQG+ E ATFS+ +L+ A+ I LI +QK+ +
Sbjct: 179 AEDSKADVDMNVIMTGKGQFVEVQGTGEEATFSRAQLNELLDAAEQGIFQLIDMQKEALG 238
Query: 240 NEV 242
+ V
Sbjct: 239 DIV 241
>gi|16124407|ref|NP_418971.1| ribonuclease PH [Caulobacter crescentus CB15]
gi|221233090|ref|YP_002515526.1| ribonuclease PH [Caulobacter crescentus NA1000]
gi|239977592|sp|B8GXP2|RNPH_CAUCN RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|239977593|sp|P0CAW5|RNPH_CAUCR RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|13421265|gb|AAK22139.1| ribonuclease PH [Caulobacter crescentus CB15]
gi|220962262|gb|ACL93618.1| ribonuclease PH [Caulobacter crescentus NA1000]
Length = 238
Score = 172 bits (435), Expect = 4e-41, Method: Composition-based stats.
Identities = 128/239 (53%), Positives = 171/239 (71%), Gaps = 2/239 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR S R +Q+R ++L V++YAEGSCL+ FG T +L TAT+EE VP W+RN GW+T
Sbjct: 1 MRPSERAPDQLRAVTLETGVNRYAEGSCLIGFGHTKVLVTATVEENVPGWMRNKGAGWVT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPR+T R +REA +G+Q GR+QEIQR+IGR+LR+VVDL ALG RQI +DCDV+Q
Sbjct: 61 AEYGMLPRATHTRGRREAAAGKQTGRTQEIQRLIGRSLRAVVDLKALGERQITLDCDVVQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTAAITGAWVAL +++ D + + G VAA+SCG+ G P++DLDY
Sbjct: 121 ADGGTRTAAITGAWVALRLATKYLLDE--GVLKTDPILGQVAAVSCGVFNGVPVLDLDYE 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
EDS + D+NFV+T G IVE+Q + E+ F++ F ++ LA+ I +L LQ+ I
Sbjct: 179 EDSNAEADSNFVLTGVGDIVEIQATGEKRGFTRAEFESLYGLAEKGINELFALQRAAIG 237
>gi|326559598|gb|EGE10012.1| ribonuclease PH [Moraxella catarrhalis 7169]
gi|326567722|gb|EGE17828.1| ribonuclease PH [Moraxella catarrhalis BC1]
Length = 238
Score = 172 bits (435), Expect = 4e-41, Method: Composition-based stats.
Identities = 125/239 (52%), Positives = 164/239 (68%), Gaps = 2/239 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR + RQ N++R I R+ +K+AEGS LV FGDT +L TA++E VP W++ GW+T
Sbjct: 1 MRSNNRQNNELRPIHFIRQYTKHAEGSVLVCFGDTKVLCTASIEAGVPRWLKGQGKGWLT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPR+TG R +REA G+Q GR+QEIQR+IGR+LR+++DLS LG I IDCDVIQ
Sbjct: 61 AEYGMLPRATGTRTQREAARGKQSGRTQEIQRLIGRSLRAMLDLSKLGENTIYIDCDVIQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+I+GA VAL D L+ K L G VAA+S G+ G ++DLDY
Sbjct: 121 ADGGTRTASISGAAVALIDALE--HLQRRKKLTQDPLLGLVAAVSVGVNQGRVLLDLDYA 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
EDST D D N VM +G +E+QG+AE F++ AML+LA+ I +I+ QK V+
Sbjct: 179 EDSTCDTDLNVVMMQAGGFIEIQGTAEEKPFTRAEANAMLDLAELGIGQIIEAQKQVLG 237
>gi|294056535|ref|YP_003550193.1| ribonuclease PH [Coraliomargarita akajimensis DSM 45221]
gi|293615868|gb|ADE56023.1| ribonuclease PH [Coraliomargarita akajimensis DSM 45221]
Length = 252
Score = 172 bits (435), Expect = 4e-41, Method: Composition-based stats.
Identities = 106/240 (44%), Positives = 143/240 (59%), Gaps = 4/240 (1%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIR--NTKHGWI 59
R R +Q+R I ++ +A GS LV FG T ++ A++++KVP W+R + GW+
Sbjct: 11 RPDQRAVDQLRPIHFETGIAPHALGSVLVSFGQTRVICAASIDKKVPGWMRAQGVEGGWM 70
Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119
TAEY MLP ST +R R+ G+ GR+ EIQR+IGR+LR+V DL L R I IDCDV+
Sbjct: 71 TAEYSMLPYSTLDRKPRDISRGKADGRTIEIQRLIGRSLRAVFDLKKLPGRTIWIDCDVL 130
Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179
QADGGTRTA+I+GA+VA +Q + + VAAIS G+ P++DL+Y
Sbjct: 131 QADGGTRTASISGAYVAAQIAVQKLIAA--GELEANPFTDSVAAISVGVFQDTPVLDLNY 188
Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
ED VDAN VMT +G VEVQ S E ATF + +L L I +L LQ+ I
Sbjct: 189 PEDKDASVDANIVMTGTGKYVEVQSSGEEATFDRAELDTLLELGAKGIQELSALQQQAIE 248
>gi|152976902|ref|YP_001376419.1| ribonuclease PH [Bacillus cereus subsp. cytotoxis NVH 391-98]
gi|189043753|sp|A7GTG6|RNPH_BACCN RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|152025654|gb|ABS23424.1| ribonuclease PH [Bacillus cytotoxicus NVH 391-98]
Length = 245
Score = 172 bits (435), Expect = 4e-41, Method: Composition-based stats.
Identities = 109/242 (45%), Positives = 154/242 (63%), Gaps = 1/242 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR+ GR+ ++R + + K+ EGS L++ GDT ++ +AT+EE+VP ++R GW+T
Sbjct: 1 MRVDGREVRELRHVHIHTNYLKHPEGSVLIEVGDTKVICSATVEERVPPFMRGEGKGWVT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEY M+PR+T R RE+ G+ GR+ EIQR+IGRALR+VVDL LG R + IDCDVIQ
Sbjct: 61 AEYAMIPRATEQRTIRESSKGKVTGRTMEIQRLIGRALRAVVDLEVLGERTVWIDCDVIQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+ITGA+VA+ + + + K V A + ++DL+Y
Sbjct: 121 ADGGTRTASITGAYVAMVLAFEKLL-QAEKVTKIPVKDYLAATSVGILEEQGVVLDLNYA 179
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
EDS DVD N +MT GH VEVQG+ E ATFS+ +L+ A+ I LI+ QK+ + +
Sbjct: 180 EDSKADVDMNVIMTGKGHFVEVQGTGEEATFSRAQLNELLDAAEHGILQLIEKQKEALGD 239
Query: 241 EV 242
V
Sbjct: 240 IV 241
>gi|257463721|ref|ZP_05628110.1| ribonuclease PH [Fusobacterium sp. D12]
gi|317061266|ref|ZP_07925751.1| ribonuclease PH [Fusobacterium sp. D12]
gi|313686942|gb|EFS23777.1| ribonuclease PH [Fusobacterium sp. D12]
Length = 249
Score = 172 bits (435), Expect = 4e-41, Method: Composition-based stats.
Identities = 113/240 (47%), Positives = 164/240 (68%), Gaps = 2/240 (0%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
RL GR+ENQ+REI +TR + +AEGS L++ G+T ++ TA++ EKVP +++NT GW+TA
Sbjct: 3 RLDGRRENQLREIKITRDFNMHAEGSVLIESGNTKVICTASVSEKVPSFLKNTGKGWLTA 62
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
EY M+PR+TG R +REA G+ GR+ EIQR+IGRALRS VDL LG R I +DCDVIQA
Sbjct: 63 EYCMIPRATGERTQREAAKGKLSGRTMEIQRLIGRALRSSVDLEKLGERTITLDCDVIQA 122
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
DGGTRTA+ITG+++A+ + + + + VAA+S G ++DL+Y E
Sbjct: 123 DGGTRTASITGSFIAMAIAVAKLLKEEILTES--PVLSRVAAVSVGKHENSILLDLNYEE 180
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
DS+ +VD N + D G +EVQG+ E ATF + A+L++A+ I L++ QK+V+ +
Sbjct: 181 DSSAEVDMNVIQNDLGEYIEVQGTGEEATFCRKELNALLDMAEIGIHQLLEKQKEVLGED 240
>gi|198284080|ref|YP_002220401.1| ribonuclease PH [Acidithiobacillus ferrooxidans ATCC 53993]
gi|218667606|ref|YP_002426735.1| ribonuclease PH [Acidithiobacillus ferrooxidans ATCC 23270]
gi|198248601|gb|ACH84194.1| ribonuclease PH [Acidithiobacillus ferrooxidans ATCC 53993]
gi|218519819|gb|ACK80405.1| ribonuclease PH [Acidithiobacillus ferrooxidans ATCC 23270]
Length = 242
Score = 172 bits (435), Expect = 4e-41, Method: Composition-based stats.
Identities = 121/236 (51%), Positives = 160/236 (67%), Gaps = 2/236 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+R SGR + +R + +TR +K+AEGS L+ GDT +L TA++EEKVP ++R GW+T
Sbjct: 2 IRPSGRNADALRPVQVTRNFTKHAEGSVLIACGDTKVLCTASVEEKVPPFLRGAGKGWVT 61
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEY MLPR+T RV RE+ GR GGR+ EIQR+IGR+LR+ VDL ALG R I +DCDV+Q
Sbjct: 62 AEYSMLPRATRERVARESAKGRIGGRTHEIQRLIGRSLRAAVDLQALGERTIWVDCDVLQ 121
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+ITGA +A+ D + + + L+ VAA+S G+ G ++DLDY
Sbjct: 122 ADGGTRTASITGACLAVADAV--QHLRTVGQLRNNPLRDWVAAVSVGVYQGQAVLDLDYA 179
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
EDS DVD N VMT +G VEVQG+AE A FS + ML LA+ IA+L+ Q
Sbjct: 180 EDSNADVDMNVVMTGAGAFVEVQGTAEGAVFSAEQMAEMLALARKGIAELVARQHQ 235
>gi|227548661|ref|ZP_03978710.1| ribonuclease PH [Corynebacterium lipophiloflavum DSM 44291]
gi|227079275|gb|EEI17238.1| ribonuclease PH [Corynebacterium lipophiloflavum DSM 44291]
Length = 246
Score = 172 bits (435), Expect = 4e-41, Method: Composition-based stats.
Identities = 105/238 (44%), Positives = 154/238 (64%), Gaps = 2/238 (0%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
RL GR ++MR + +TR + GS LV+FG T ++ TA++E VP + +++ GW+TA
Sbjct: 10 RLDGRAFDEMRPVRITRGFTTNPAGSVLVEFGATRVMCTASVEVGVPRFKKDSGEGWLTA 69
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
EY MLP +T R+ RE++ G+ GR+ EI R++GR+LR+ VDL+ LG I +DCDV+QA
Sbjct: 70 EYAMLPSATHERMPRESMKGKVKGRTHEISRLVGRSLRAAVDLAQLGENTIQLDCDVLQA 129
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
DGGTRTA+ITGA+VAL D + + + + L VAA+S G++ G+ +DL Y E
Sbjct: 130 DGGTRTASITGAYVALADAIAFLSER--GLVPGEPLLAPVAAVSAGLVDGHVALDLPYEE 187
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
DS +VD N VM DSG+ VE+QG+ E F + AML +A+ +LI+ QK +
Sbjct: 188 DSRAEVDLNVVMNDSGNFVEIQGTGEHGLFGRAELDAMLTVAEKGCRELIEAQKAALG 245
>gi|126724518|ref|ZP_01740361.1| ribonuclease PH [Rhodobacterales bacterium HTCC2150]
gi|126705682|gb|EBA04772.1| ribonuclease PH [Rhodobacterales bacterium HTCC2150]
Length = 235
Score = 172 bits (435), Expect = 4e-41, Method: Composition-based stats.
Identities = 122/238 (51%), Positives = 167/238 (70%), Gaps = 3/238 (1%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR SGR+ NQMR++ + V+++AEGSCL+K GDTH+L TA+LE VP +++N+ GW+T
Sbjct: 1 MRPSGRELNQMRDVVIETNVTRHAEGSCLIKMGDTHVLCTASLEPGVPRFLKNSGLGWVT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPR+T R++R Q GR+QEIQR+IGR+LR+ +D ALG RQI IDCDVIQ
Sbjct: 61 AEYGMLPRATNTRMRR-EAKNGQSGRTQEIQRLIGRSLRACIDRVALGERQITIDCDVIQ 119
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTR A+ITG WVAL + + + + H+AA+SCG+ G ++DLDY
Sbjct: 120 ADGGTRCASITGGWVALRLAVNRLMKA--GEVKTDPIMDHIAAVSCGIYAGQCVLDLDYP 177
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
EDS D NFVMT + +VE+QGSAE ATFS+D F +++LA+ + +L+ QK +
Sbjct: 178 EDSEAGTDGNFVMTGAKGMVELQGSAEGATFSRDQFNQLMDLAEKGVDELVAAQKAAV 235
>gi|282849100|ref|ZP_06258485.1| tRNA nucleotidyltransferase [Veillonella parvula ATCC 17745]
gi|282580804|gb|EFB86202.1| tRNA nucleotidyltransferase [Veillonella parvula ATCC 17745]
Length = 251
Score = 172 bits (435), Expect = 4e-41, Method: Composition-based stats.
Identities = 122/239 (51%), Positives = 159/239 (66%), Gaps = 4/239 (1%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR R Q+R I +TR ++YAEGS L++ G T ++ TAT+E+ VP W++ + GW+T
Sbjct: 1 MRSDNRTAGQLRPIKITRNFTEYAEGSVLIECGKTKVICTATVEDSVPRWLKGSGQGWVT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEY +LPRST RV REA G+Q GR+ EIQR+IGRALR+VVDL ALG R I IDCDVIQ
Sbjct: 61 AEYSLLPRSTQTRVSREAAKGKQTGRTVEIQRLIGRALRAVVDLEALGERSITIDCDVIQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+ITGA+VAL D D + + AAIS G+ PI DL Y
Sbjct: 121 ADGGTRTASITGAFVALVDA----VDFTFGGAGKFPITNFCAAISVGIGPDGPITDLCYE 176
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
EDS VD N V T SG++VEVQG+ E TF++D A+L+LA+ +L+ Q++V+
Sbjct: 177 EDSAAIVDMNVVRTGSGNMVEVQGTGEHGTFNRDELNALLDLAEAATDELMAKQREVLG 235
>gi|255094294|ref|ZP_05323772.1| ribonuclease PH [Clostridium difficile CIP 107932]
Length = 378
Score = 172 bits (435), Expect = 4e-41, Method: Composition-based stats.
Identities = 112/235 (47%), Positives = 156/235 (66%), Gaps = 2/235 (0%)
Query: 6 RQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGM 65
R Q+R + +TR +KYAEGS L++ G+T ++ TA++EEKVP ++RN+ GWI AEY M
Sbjct: 7 RSNEQIRPVKITRDYTKYAEGSVLIEMGETKVICTASVEEKVPPFLRNSGTGWINAEYSM 66
Query: 66 LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125
LPR+T R R+A G+ GR+QEIQR+IGRA+RSVVDL+ LG R I +DCDVIQADGGT
Sbjct: 67 LPRATQQRKIRDASRGKIDGRTQEIQRLIGRAIRSVVDLNKLGERTIWVDCDVIQADGGT 126
Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185
RTA+ITGA+VA+ + + + K + V+AIS G++ G ++DL Y EDS
Sbjct: 127 RTASITGAFVAVAEAIYKLYKA--KTIKEMPITNFVSAISVGIVNGIHMLDLCYEEDSKA 184
Query: 186 DVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
VD N +MTD VEVQG+ E FS+ +L L + +LI+LQ++ +
Sbjct: 185 QVDMNIIMTDKCEFVEVQGTGEEKPFSRADLNLLLELGEKGNKELIRLQREALGE 239
>gi|319441882|ref|ZP_07991038.1| ribonuclease PH [Corynebacterium variabile DSM 44702]
Length = 256
Score = 172 bits (435), Expect = 4e-41, Method: Composition-based stats.
Identities = 110/237 (46%), Positives = 153/237 (64%), Gaps = 2/237 (0%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R GR +++R + +TR + GS LV+FG+T ++ TA++ E VP + R++ GW+TA
Sbjct: 8 RFDGRAVDELRPVRITRGFTTNPAGSVLVEFGNTRVMCTASVSEGVPRFKRDSGEGWLTA 67
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
EY MLP +T R+ REA+ G+ GR+ EI R+IGR+LR+ VDL ALG + IDCDV+QA
Sbjct: 68 EYAMLPSATAERMPREALKGKVKGRTHEISRLIGRSLRAAVDLRALGENTVNIDCDVLQA 127
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
DGGTRTA+ITGA+VAL D L + L VAA+S G++ G P +DL Y E
Sbjct: 128 DGGTRTASITGAYVALADALA--VLQQRGVVPGEPLLDPVAAVSVGVIDGVPCLDLPYPE 185
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
DS DVD N VMT G VE+QG+ E A FS+ +L+LA+ + DL+ LQ+ +
Sbjct: 186 DSRADVDMNVVMTAEGRFVEIQGTGEHAEFSRSELNELLDLAEGGLYDLVDLQRAAL 242
>gi|293605635|ref|ZP_06688015.1| tRNA nucleotidyltransferase [Achromobacter piechaudii ATCC 43553]
gi|292816015|gb|EFF75116.1| tRNA nucleotidyltransferase [Achromobacter piechaudii ATCC 43553]
Length = 244
Score = 172 bits (435), Expect = 4e-41, Method: Composition-based stats.
Identities = 120/237 (50%), Positives = 161/237 (67%), Gaps = 2/237 (0%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R SGR +++R SL R ++YAEGS LVK GDTH+L TA++ EKVP +++ GW+TA
Sbjct: 9 RPSGRAVDELRPFSLERGFTRYAEGSVLVKAGDTHVLCTASVLEKVPPFLKGKGEGWVTA 68
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
EYGMLPR+T R REA G+Q GR+QEIQR+IGR+LR+V D+ ALG R + +DCDV+QA
Sbjct: 69 EYGMLPRATHTRGDREAARGKQSGRTQEIQRLIGRSLRAVFDMRALGERTLHLDCDVLQA 128
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
DGGTR A+ITGAWVA D + + ++ VAA+S G++ G ++DLDY E
Sbjct: 129 DGGTRCASITGAWVAAADAVALLMKR--GDLAVNPIRDAVAAVSVGLVQGRSVLDLDYQE 186
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
DS D D N +MT SG VEVQG+ E ATF++ ML LA+ IA L++ Q+ +
Sbjct: 187 DSACDADVNVIMTGSGAFVEVQGTGEGATFTRAELDTMLVLAEGGIASLVRAQRAAL 243
>gi|188586564|ref|YP_001918109.1| RNAse PH [Natranaerobius thermophilus JW/NM-WN-LF]
gi|179351251|gb|ACB85521.1| RNAse PH [Natranaerobius thermophilus JW/NM-WN-LF]
Length = 246
Score = 172 bits (435), Expect = 4e-41, Method: Composition-based stats.
Identities = 105/240 (43%), Positives = 155/240 (64%), Gaps = 3/240 (1%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR R+ +++R + + K+ EGS L+ GDT ++ +AT+E KVP +++ GW+T
Sbjct: 1 MRE-NRKVDEIRPVKIETDFVKHPEGSVLITVGDTKVICSATIESKVPSFLKGEGKGWVT 59
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEY MLPR+T +R REA G+ GGR+QEIQR+IGR+LRS+V+L LG R I +DCDVIQ
Sbjct: 60 AEYSMLPRATESRNIREAAKGKLGGRTQEIQRLIGRSLRSMVNLKKLGERTIWLDCDVIQ 119
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+ITGA+V++ L + + K ++G++AAIS G++ ++DLD
Sbjct: 120 ADGGTRTASITGAFVSMVLALNKLVEE--KELSELPVEGYLAAISVGIVNDEIMLDLDGK 177
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
ED D D N TD G VE+QG+ E FS++ ML+ A+ + L+++Q +S
Sbjct: 178 EDFQADTDMNVAGTDKGEFVEIQGTGENHPFSKNEMEKMLSYAEKGMHALMEVQSQALSE 237
>gi|194289073|ref|YP_002004980.1| ribonuclease ph [Cupriavidus taiwanensis LMG 19424]
gi|226736900|sp|B3R3N0|RNPH_CUPTR RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|193222908|emb|CAQ68913.1| RNase PH [Cupriavidus taiwanensis LMG 19424]
Length = 239
Score = 172 bits (435), Expect = 4e-41, Method: Composition-based stats.
Identities = 128/239 (53%), Positives = 166/239 (69%), Gaps = 2/239 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR SGR + +R ISLTR +++AEGS L FGDT +L TA++ KVP + + GW+T
Sbjct: 1 MRPSGRAADALRSISLTRHYTRHAEGSVLCAFGDTKVLCTASVLAKVPPHKKGSGEGWVT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPR+T R REA G+Q GR+QEIQR+IGRA+RSV DL+ALG + +DCDV+Q
Sbjct: 61 AEYGMLPRATHTRSDREAARGKQTGRTQEIQRLIGRAMRSVFDLAALGEYTLHLDCDVLQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTAAITGA+VA HD + M + + ++ HVAA+S GM+ G P++DLDY
Sbjct: 121 ADGGTRTAAITGAFVAAHDAVATM--LRDGLIAASPIRDHVAAVSVGMVDGVPVLDLDYA 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
EDS D D N VMT SG VEVQG+AE A FS+ AM LA+ IA L++ Q++ +
Sbjct: 179 EDSNCDTDMNVVMTGSGGFVEVQGTAEGAPFSRADLDAMTRLAEAGIARLVQYQREALG 237
>gi|39996894|ref|NP_952845.1| ribonuclease PH [Geobacter sulfurreducens PCA]
gi|61215993|sp|Q74C79|RNPH_GEOSL RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|39983782|gb|AAR35172.1| ribonuclease PH [Geobacter sulfurreducens PCA]
gi|307634928|gb|ADI84630.2| ribonuclease PH [Geobacter sulfurreducens KN400]
Length = 238
Score = 172 bits (435), Expect = 5e-41, Method: Composition-based stats.
Identities = 121/240 (50%), Positives = 162/240 (67%), Gaps = 2/240 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR GR +R I +TR+ K+AEGS LV+FGDT +L TA++EE VP ++R GW+T
Sbjct: 1 MRSDGRNPASLRNIRITRKYLKHAEGSVLVEFGDTKVLCTASVEESVPPFLRGKGGGWVT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEY MLPR+T R REA G+ GGR+ EIQR+IGR+LR+V DL+ LG R ++IDCDV+Q
Sbjct: 61 AEYSMLPRATHTRSPREAAKGKLGGRTHEIQRLIGRSLRAVTDLTLLGERSVLIDCDVLQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+ITGA+VAL D Q + + ++ VAA+S G++ G ++DL+Y
Sbjct: 121 ADGGTRTASITGAYVALVDAFQWLVS--QGTIATLPVREAVAAVSVGIVGGEVLLDLNYI 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
EDS DVD NFVMT SG VEVQG+AE F+ M +LA I L+ +Q++V+
Sbjct: 179 EDSRADVDMNFVMTSSGRFVEVQGTAEAEPFTCAQMDDMRSLAMIGIERLMAIQQEVLEQ 238
>gi|319761729|ref|YP_004125666.1| ribonuclease ph [Alicycliphilus denitrificans BC]
gi|317116290|gb|ADU98778.1| ribonuclease PH [Alicycliphilus denitrificans BC]
Length = 245
Score = 172 bits (435), Expect = 5e-41, Method: Composition-based stats.
Identities = 127/239 (53%), Positives = 167/239 (69%), Gaps = 2/239 (0%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R GR +++R + +TRR + +AEGS L++FG+T +L TA++EEKVP R + GW+TA
Sbjct: 9 RSGGRAPDELRPVRITRRYTMHAEGSVLIEFGNTRVLCTASVEEKVPPHKRGSGSGWVTA 68
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
EYGMLPRST R REA G+Q GR+QEIQR+IGR+LR+V DL ALG R + IDCDVIQA
Sbjct: 69 EYGMLPRSTHTRSDREAARGKQSGRTQEIQRLIGRSLRAVFDLKALGERTLQIDCDVIQA 128
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
DGGTRTAAITGAWVA HD + + + G VAA+S G++ G P++DL+Y E
Sbjct: 129 DGGTRTAAITGAWVAAHDAVGTLLAAGKVAAS--PITGAVAAVSVGIVQGQPLLDLEYVE 186
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
D D D N VMT +GH VEVQG+AE A FS+ +L LA+ IA+L+ LQ++ + N
Sbjct: 187 DVACDTDMNVVMTGAGHYVEVQGTAEGAAFSRREMDQLLALAEKGIAELVLLQQESLRN 245
>gi|291166728|gb|EFE28774.1| ribonuclease PH/Ham1 protein [Filifactor alocis ATCC 35896]
Length = 471
Score = 171 bits (434), Expect = 5e-41, Method: Composition-based stats.
Identities = 106/233 (45%), Positives = 158/233 (67%), Gaps = 2/233 (0%)
Query: 10 QMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRS 69
Q+R+I++ ++KYAEGS LV FGDT ++ TA++EEKVP +++ T GW++AEY MLPRS
Sbjct: 6 QLRDINIETGINKYAEGSVLVSFGDTRVICTASVEEKVPAFLKGTGKGWVSAEYAMLPRS 65
Query: 70 TGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAA 129
T R KR++ G+ GR QEIQR+IGR+LR+ +D LG R I IDCDVIQADGGTRTA+
Sbjct: 66 TEQRKKRDSSRGKVDGRGQEIQRLIGRSLRNAIDFDLLGERTIWIDCDVIQADGGTRTAS 125
Query: 130 ITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDA 189
I+G++VA+ + + D K + +++A+S G++ G I+DL+Y DS DVD
Sbjct: 126 ISGSFVAMAIACKQLYDK--KMIEEFPISHYISAVSVGIVNGKNILDLNYEFDSKADVDL 183
Query: 190 NFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNEV 242
N VM ++ VE+QG+AE F + ++L LA+ ++I+LQK + ++
Sbjct: 184 NVVMNENLEYVELQGTAEGVAFRRQQLDSLLTLAEIGCKEIIELQKTALGKQI 236
>gi|253575653|ref|ZP_04852989.1| ribonuclease PH [Paenibacillus sp. oral taxon 786 str. D14]
gi|251844991|gb|EES73003.1| ribonuclease PH [Paenibacillus sp. oral taxon 786 str. D14]
Length = 252
Score = 171 bits (434), Expect = 5e-41, Method: Composition-based stats.
Identities = 114/239 (47%), Positives = 160/239 (66%), Gaps = 2/239 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR +GRQ ++ R ++LT V+KYAEGS ++ GDT ++ TAT+EEKVPM+++ GW+T
Sbjct: 1 MRSNGRQADERRAMNLTVNVNKYAEGSVYIEVGDTKVMCTATVEEKVPMFMKGQGKGWVT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEY MLPR+T R +RE+ G+ GR+ EIQR+I RALRSVVDL ALG R I IDCDV+Q
Sbjct: 61 AEYSMLPRATQTRNQRESARGKLSGRTMEIQRLIARALRSVVDLQALGERSITIDCDVLQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRT +ITGA+VAL + + + + +A++S G++ ++DL+Y
Sbjct: 121 ADGGTRTTSITGAFVALALAMHKIAQKHALPK--FPITDFLASVSVGIVGEDTLLDLNYE 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
EDS VD N VMT +G VEVQG+ E FS+ ML LA+ I ++I+ Q++ +
Sbjct: 179 EDSKAKVDMNVVMTGNGQFVEVQGTGEENPFSRAELDHMLELAEKGIREMIEQQREALG 237
>gi|227504000|ref|ZP_03934049.1| ribonuclease PH [Corynebacterium striatum ATCC 6940]
gi|227199394|gb|EEI79442.1| ribonuclease PH [Corynebacterium striatum ATCC 6940]
Length = 245
Score = 171 bits (434), Expect = 5e-41, Method: Composition-based stats.
Identities = 104/238 (43%), Positives = 156/238 (65%), Gaps = 2/238 (0%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R GR +QMR + +TR + GS LV+FG+T ++ TA++E VP + +++ GW+TA
Sbjct: 9 RADGRALDQMRSVRITRNFTTNPAGSVLVEFGNTRVMCTASVEFGVPRFKKDSGEGWLTA 68
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
EY MLP +T +R+ RE++ G+ GR+ EI R++GR+LR+ VDLS LG I +DCDV+QA
Sbjct: 69 EYSMLPAATHDRMPRESMKGKVKGRTHEISRLVGRSLRAAVDLSELGENTIQLDCDVLQA 128
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
DGGTRTA+ITGA+VAL D +++++ + L VAA+S G++ G +DL Y E
Sbjct: 129 DGGTRTASITGAYVALADAIEYLKSE--GVVPGEPLLDPVAAVSVGIIDGQICLDLPYEE 186
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
DS +VD N VM + G VE+QG+ E F +D +ML++A+ +LI+ QK +
Sbjct: 187 DSRAEVDLNVVMQEGGDFVEIQGTGEHGLFGRDELNSMLDVAQKGCEELIEAQKAALG 244
>gi|227488224|ref|ZP_03918540.1| ribonuclease PH [Corynebacterium glucuronolyticum ATCC 51867]
gi|227091794|gb|EEI27106.1| ribonuclease PH [Corynebacterium glucuronolyticum ATCC 51867]
Length = 237
Score = 171 bits (434), Expect = 5e-41, Method: Composition-based stats.
Identities = 102/238 (42%), Positives = 156/238 (65%), Gaps = 7/238 (2%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R GR +++RE+ +TR + GS LV+FG T ++ TA+++E VP + +++ GW+TA
Sbjct: 7 RADGRATDELREVKITRNFTTNPAGSVLVEFGRTRVMCTASVQEGVPRFKKDSGEGWLTA 66
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
EY MLP +T R RE+V G+ GR+QEI R++GR+LR+ +DL+ LG I +DCDV+QA
Sbjct: 67 EYAMLPAATNERNPRESVKGKVKGRTQEISRLVGRSLRAAIDLTKLGEYTIALDCDVLQA 126
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
DGGTRTA+ITGA+VAL D L ++ VAAIS G++ G+P +DL Y E
Sbjct: 127 DGGTRTASITGAYVALADALASIDKTDALLP-------PVAAISVGLIDGHPCLDLPYEE 179
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
DS +VD N +M ++G VE+QG+ E FS++ +L+L + +L++ QK+ ++
Sbjct: 180 DSRAEVDMNIIMKENGTFVEIQGTGEHGDFSREQLGTLLDLGEKGCRELVEKQKEALA 237
>gi|77165901|ref|YP_344426.1| ribonuclease PH [Nitrosococcus oceani ATCC 19707]
gi|123593634|sp|Q3J8F0|RNPH_NITOC RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|76884215|gb|ABA58896.1| RNAse PH [Nitrosococcus oceani ATCC 19707]
Length = 239
Score = 171 bits (434), Expect = 5e-41, Method: Composition-based stats.
Identities = 123/240 (51%), Positives = 169/240 (70%), Gaps = 2/240 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR SGR +++R I TR ++YAEGS LV+FG+T ++ A++E+++P +++ T GWIT
Sbjct: 1 MRPSGRAPHELRPIHFTRHYTRYAEGSVLVEFGNTRVICNASVEDRIPRFLKGTGRGWIT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPRST NR+ REA GRQGGR+ EIQR IGRALR+VVDL+ALG + +DCDVIQ
Sbjct: 61 AEYGMLPRSTHNRMGREAAQGRQGGRTLEIQRFIGRALRAVVDLAALGEVTVTLDCDVIQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTAAITG++VAL D + + + + G +A+IS G+ G P++DLDY
Sbjct: 121 ADGGTRTAAITGSYVALVDAINNRLKK--RIITHSPIHGQLASISVGIYEGTPVLDLDYR 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
EDST + D N VM ++G +E+QG+AE F + AML+LAK I L+ Q +V++
Sbjct: 179 EDSTAETDMNVVMNEAGAFIEIQGTAEGHAFRMNELQAMLDLAKSGINTLLAQQTEVLAK 238
>gi|58039735|ref|YP_191699.1| ribonuclease PH [Gluconobacter oxydans 621H]
gi|58002149|gb|AAW61043.1| Ribonuclease PH [Gluconobacter oxydans 621H]
Length = 240
Score = 171 bits (434), Expect = 5e-41, Method: Composition-based stats.
Identities = 113/238 (47%), Positives = 155/238 (65%), Gaps = 7/238 (2%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R SGR ++ R +S+ +++AEGS L++ G T +L TAT+E++VP ++RN GWITA
Sbjct: 8 RPSGRAPDENRIVSIETGFARHAEGSALIRVGGTEVLCTATIEDRVPPFLRNKGQGWITA 67
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
EYGMLPR+T +R +REA G+Q GR+QEIQR+I R+LR+ VDL +G R I +DCDV+ A
Sbjct: 68 EYGMLPRATHSRGQREAAKGKQSGRTQEIQRLIARSLRACVDLKKIGERTITLDCDVLNA 127
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
DGGTR A+ITGAWVAL L+ + VAA+SCG+ ++DLDY E
Sbjct: 128 DGGTRCASITGAWVALSLALKKAKRSQALTA-------QVAAVSCGLTDAGAVLDLDYVE 180
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
DS+ D NFV+T G I+E+QG+AE F + FF +L LAK A L + Q +
Sbjct: 181 DSSAQADTNFVLTADGGIIEIQGTAEDKPFQESEFFELLRLAKLGTARLFEAQNKALE 238
>gi|296139019|ref|YP_003646262.1| ribonuclease PH [Tsukamurella paurometabola DSM 20162]
gi|296027153|gb|ADG77923.1| ribonuclease PH [Tsukamurella paurometabola DSM 20162]
Length = 260
Score = 171 bits (434), Expect = 5e-41, Method: Composition-based stats.
Identities = 109/238 (45%), Positives = 155/238 (65%), Gaps = 1/238 (0%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R GR ++++R +++TR ++ GS LV+FG+T +L TA++E VP W R + GW+TA
Sbjct: 4 RADGRADDELRPVTITRGFTQNPAGSVLVEFGNTKVLCTASVELGVPGWRRGSGQGWLTA 63
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
EY MLP +T R +RE+ G+ GGR+ EI R+IGR+LR+ +DL+ALG I IDCDV+QA
Sbjct: 64 EYAMLPGATHERSRRESTKGKVGGRTHEISRLIGRSLRACIDLAALGENTIAIDCDVLQA 123
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
DGGTRTA+ITGA+VAL D + K Q + +AA+S G++ G +DL Y E
Sbjct: 124 DGGTRTASITGAYVALCDA-VTYLGAAGKLTDPQPISCAIAAVSVGVVDGRVRLDLPYEE 182
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
DS +VD N V TD+G +VEVQG+ E ATF++ ML+ A L +QK ++
Sbjct: 183 DSRAEVDMNVVATDTGTLVEVQGTGEGATFARTTLDWMLDSALSGTEKLFAVQKQALA 240
>gi|121587563|ref|ZP_01677329.1| ribonuclease PH [Vibrio cholerae 2740-80]
gi|121548201|gb|EAX58271.1| ribonuclease PH [Vibrio cholerae 2740-80]
Length = 229
Score = 171 bits (434), Expect = 5e-41, Method: Composition-based stats.
Identities = 119/230 (51%), Positives = 158/230 (68%), Gaps = 2/230 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR R +Q+R I +TR + YAEGS LV+FG+T +L A++EE VP W++ GW+T
Sbjct: 1 MRPDNRAADQVRPIKITRHYTAYAEGSVLVEFGNTKVLCNASIEEGVPRWLKGQGKGWVT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPR+T +R +REA +G+QGGR+ EIQR+I R+LR+VVDL A+G I +DCDVIQ
Sbjct: 61 AEYGMLPRATHSRTRREATNGKQGGRTMEIQRLIARSLRAVVDLEAMGEIMITVDCDVIQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+ITGA VAL D H+ +KGHVAA+S G+L + DL+Y
Sbjct: 121 ADGGTRTASITGASVALADAFAHLIAK--GQLKKNPMKGHVAAVSVGILGEDVLCDLEYV 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADL 230
EDS D D N VMT+ G ++E+QG+AE FS + +L +AK IAD+
Sbjct: 179 EDSAADTDMNVVMTEEGKMIEIQGTAEGEPFSHEQLLELLAVAKKGIADM 228
>gi|289549062|ref|YP_003474050.1| ribonuclease PH [Thermocrinis albus DSM 14484]
gi|289182679|gb|ADC89923.1| ribonuclease PH [Thermocrinis albus DSM 14484]
Length = 255
Score = 171 bits (434), Expect = 5e-41, Method: Composition-based stats.
Identities = 114/235 (48%), Positives = 156/235 (66%), Gaps = 2/235 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR GR+ N++R+I +TR K+ EGS LV+FGDT ++ T +++E VP +++ GWIT
Sbjct: 1 MRSDGRKPNELRKIRITRDYLKHPEGSVLVEFGDTKVVCTVSVQESVPPFLKGKGQGWIT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEY MLPR+T R RE+V GR GGR+ EIQRMIGRA+R+ +DL+ +G R IDCDV+Q
Sbjct: 61 AEYSMLPRATQTRNIRESVQGRVGGRTHEIQRMIGRAMRTALDLTKVGERTFWIDCDVLQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTAAITGA+VAL D + + + +K VAA+S G++ ++DL++
Sbjct: 121 ADGGTRTAAITGAFVALADAVIKLYTE--GVLTTTPIKDFVAAVSVGIVDDQILLDLNFE 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
EDS VD N V T SG I E+ E TFS++ MLNLA I L++LQ+
Sbjct: 179 EDSRAKVDMNVVATGSGMISEIHAMGEEHTFSREDMDKMLNLALAGIRQLVELQR 233
>gi|220928777|ref|YP_002505686.1| ribonuclease PH [Clostridium cellulolyticum H10]
gi|254808583|sp|B8I1A8|RNPH_CLOCE RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|219999105|gb|ACL75706.1| ribonuclease PH [Clostridium cellulolyticum H10]
Length = 240
Score = 171 bits (434), Expect = 5e-41, Method: Composition-based stats.
Identities = 108/238 (45%), Positives = 158/238 (66%), Gaps = 2/238 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+R GR Q+R + + R K+AEGS L++ GDT ++ TA++EE++P + +++ GW+T
Sbjct: 2 LRHDGRSNTQLRSVRILRNYIKHAEGSVLIEVGDTKVICTASVEERIPPFKKDSGEGWVT 61
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEY MLPR+T R +R+ + GRS EIQR+IGR+LR++VDL LG R I IDCDVIQ
Sbjct: 62 AEYSMLPRATAVRNQRDISKLKLNGRSSEIQRLIGRSLRTIVDLKLLGERTITIDCDVIQ 121
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+ITG++VAL D + + + G VAA S G++ G ++DL Y
Sbjct: 122 ADGGTRTASITGSYVALVDACRTLVKK--GLISKMPVTGTVAATSVGIVNGEELLDLCYI 179
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
EDS +VD N + TD G +E+Q + E+++FS+ +LNLA+ I +LIK Q +V+
Sbjct: 180 EDSNAEVDMNVIKTDKGEFIEIQATGEKSSFSKKQLDQLLNLAESGIHELIKAQNEVL 237
>gi|224499091|ref|ZP_03667440.1| ribonuclease PH [Listeria monocytogenes Finland 1988]
Length = 248
Score = 171 bits (434), Expect = 6e-41, Method: Composition-based stats.
Identities = 109/242 (45%), Positives = 157/242 (64%), Gaps = 1/242 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR+ GR+ N +R I +T + EGS L+ G+T ++ +A++E KVP ++R GWI+
Sbjct: 1 MRVDGRESNALRNIEITPDYLMHPEGSVLIASGNTKVICSASVETKVPPFMRGEGRGWIS 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEY MLPR+T R RE+ G+ GR+ EIQR+IGRALR+VVDL ALG R I +DCDVIQ
Sbjct: 61 AEYSMLPRATNTRNIRESSKGKVTGRTMEIQRLIGRALRAVVDLDALGERTIWLDCDVIQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+ITGA++A+ + +++ F V A + G ++DL+Y
Sbjct: 121 ADGGTRTASITGAFIAMVMAIAKLDEAVP-FAKFPVKDFLAATSVGVLDEGGTVLDLNYV 179
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
EDS VD N +MT SG VE+QG+ E ATFS+ ++ L K I++LI++QK+ + +
Sbjct: 180 EDSAAQVDMNIIMTGSGAFVELQGTGEEATFSETELAELIALGKKGISELIEIQKETLGD 239
Query: 241 EV 242
+V
Sbjct: 240 KV 241
>gi|255657266|ref|ZP_05402675.1| ribonuclease PH [Clostridium difficile QCD-23m63]
gi|296451893|ref|ZP_06893610.1| ribonuclease PH/Ham1 protein [Clostridium difficile NAP08]
gi|296879712|ref|ZP_06903687.1| ribonuclease PH/Ham1 protein [Clostridium difficile NAP07]
gi|296259275|gb|EFH06153.1| ribonuclease PH/Ham1 protein [Clostridium difficile NAP08]
gi|296429301|gb|EFH15173.1| ribonuclease PH/Ham1 protein [Clostridium difficile NAP07]
Length = 449
Score = 171 bits (434), Expect = 6e-41, Method: Composition-based stats.
Identities = 113/235 (48%), Positives = 156/235 (66%), Gaps = 2/235 (0%)
Query: 6 RQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGM 65
R Q+R + +TR +KYAEGS L++ G+T ++ TA++EEKVP ++RN+ GWI AEY M
Sbjct: 7 RSNEQIRPVKITRDYTKYAEGSVLIEMGETKVICTASVEEKVPPFLRNSGTGWINAEYSM 66
Query: 66 LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125
LPR+T R R+A G+ GR+QEIQR+IGRA+RSVVDL+ LG R I +DCDVIQADGGT
Sbjct: 67 LPRATQQRKIRDASRGKIDGRTQEIQRLIGRAIRSVVDLNKLGERTIWVDCDVIQADGGT 126
Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185
RTA+ITGA+VA+ + + + K + V+AIS G++ G ++DL Y EDS
Sbjct: 127 RTASITGAFVAVAEAIYKLYKA--KTVKEMPITNFVSAISVGIVNGTHMLDLCYEEDSKA 184
Query: 186 DVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
VD N +MTD VEVQG+ E FS+ +L L + +LI+LQK+ +
Sbjct: 185 QVDMNIIMTDKCEFVEVQGTGEEKPFSRTDLNLLLELGEKGNKELIRLQKEALGE 239
>gi|196230861|ref|ZP_03129722.1| ribonuclease PH [Chthoniobacter flavus Ellin428]
gi|196225202|gb|EDY19711.1| ribonuclease PH [Chthoniobacter flavus Ellin428]
Length = 256
Score = 171 bits (434), Expect = 6e-41, Method: Composition-based stats.
Identities = 113/241 (46%), Positives = 156/241 (64%), Gaps = 4/241 (1%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT--KHGWI 59
R GR+ +Q+R IS T ++ ++ GS LV G+T ++ +A +EE +P W++ GW+
Sbjct: 3 RNDGRKNDQLRPISFTPNIAPHSTGSVLVAAGNTRVICSAMIEESIPNWMKFQKVPGGWL 62
Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119
TAEY MLP ST R +R++ GR GRS EIQR+IGR+LR+VVDL LG R + IDCDV+
Sbjct: 63 TAEYSMLPYSTLERKQRDSAKGRIDGRSVEIQRLIGRSLRAVVDLDLLGPRTLCIDCDVL 122
Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179
QADGGTRTA+ITGA VA ++ + + + +K VAA+S G++ G P++DL+Y
Sbjct: 123 QADGGTRTASITGACVAASLAVEKLIEKKLLTKS--PIKQLVAAVSVGVVNGEPMLDLNY 180
Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
ED VD N VMT +G VEVQGS E TFS+ AM+ L K I +LI Q+ IS
Sbjct: 181 LEDKDASVDMNLVMTANGQFVEVQGSGEEQTFSESELAAMMTLGKKGIGELIAAQRAAIS 240
Query: 240 N 240
+
Sbjct: 241 S 241
>gi|238020106|ref|ZP_04600532.1| hypothetical protein VEIDISOL_01987 [Veillonella dispar ATCC 17748]
gi|237863630|gb|EEP64920.1| hypothetical protein VEIDISOL_01987 [Veillonella dispar ATCC 17748]
Length = 251
Score = 171 bits (434), Expect = 6e-41, Method: Composition-based stats.
Identities = 122/239 (51%), Positives = 159/239 (66%), Gaps = 4/239 (1%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR R Q+R I +TR ++YAEGS L++ G T ++ TAT+E+ VP W++ + GW+T
Sbjct: 1 MRSDNRTAGQLRPIKITRNFTEYAEGSVLIECGKTKVICTATVEDSVPRWLKGSGQGWVT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEY +LPRST RV REA G+Q GR+ EIQR+IGRALR+VVDL ALG R I IDCDVIQ
Sbjct: 61 AEYSLLPRSTQTRVSREAAKGKQTGRTVEIQRLIGRALRAVVDLEALGERSITIDCDVIQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+ITGA+VAL D D + + AAIS G+ PI DL Y
Sbjct: 121 ADGGTRTASITGAFVALVDA----VDFTFGGAGKFPITDFCAAISVGIGPEGPITDLCYE 176
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
EDS VD N V T SG++VEVQG+ E TF++D A+L+LA+ +L+ Q++V+
Sbjct: 177 EDSAAIVDMNVVRTGSGNMVEVQGTGEHGTFNRDELNALLDLAEAATDELMAKQREVLG 235
>gi|94309797|ref|YP_583007.1| ribonuclease PH [Cupriavidus metallidurans CH34]
gi|166228306|sp|Q1LQ38|RNPH_RALME RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|93353649|gb|ABF07738.1| ribonuclease PH [Cupriavidus metallidurans CH34]
Length = 238
Score = 171 bits (433), Expect = 6e-41, Method: Composition-based stats.
Identities = 127/239 (53%), Positives = 163/239 (68%), Gaps = 2/239 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR SGR + +R I+LTR+ +++AEGS L FGDT +L TA++ KVP + + GW+T
Sbjct: 1 MRPSGRAADALRPITLTRQYTRHAEGSVLSAFGDTKVLCTASVLAKVPPHKKGSGEGWVT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPR+T R REA G+Q GR+QEIQR+IGRA+RSV DL+ALG I +DCDV+Q
Sbjct: 61 AEYGMLPRATHTRSDREAARGKQTGRTQEIQRLIGRAMRSVFDLAALGEYTIHLDCDVLQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTAAITGA+VA HD + M ++ VAA+S GM+ G P++DLDY
Sbjct: 121 ADGGTRTAAITGAFVAAHDAVSAMLRDGQIKAS--PIRDFVAAVSVGMVNGVPVLDLDYA 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
EDS D D N VMT SG VEVQG+AE FS+ AM LA+ IA+L++ QK +
Sbjct: 179 EDSNCDTDMNVVMTGSGGFVEVQGTAEGTPFSRADLDAMTRLAEAGIAELVRHQKQALG 237
>gi|254828598|ref|ZP_05233285.1| ribonuclease PH [Listeria monocytogenes FSL N3-165]
gi|254830008|ref|ZP_05234663.1| ribonuclease PH [Listeria monocytogenes 10403S]
gi|255025220|ref|ZP_05297206.1| ribonuclease PH [Listeria monocytogenes FSL J2-003]
gi|258600996|gb|EEW14321.1| ribonuclease PH [Listeria monocytogenes FSL N3-165]
Length = 248
Score = 171 bits (433), Expect = 6e-41, Method: Composition-based stats.
Identities = 109/242 (45%), Positives = 157/242 (64%), Gaps = 1/242 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR+ GR+ N +R I +T + EGS L+ G+T ++ +A++E KVP ++R GWI+
Sbjct: 1 MRVDGRESNALRNIEITPDYLMHPEGSVLIASGNTKVICSASVETKVPPFMRGEGRGWIS 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEY MLPR+T R RE+ G+ GR+ EIQR+IGRALR+VVDL ALG R I +DCDVIQ
Sbjct: 61 AEYSMLPRATNTRNIRESSKGKVTGRTMEIQRLIGRALRAVVDLDALGERTIWLDCDVIQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+ITGA++A+ + +++ F V A + G ++DL+Y
Sbjct: 121 ADGGTRTASITGAFIAMVMAIAKLDEAVP-FAKFPVKDFLAATSVGVLEEGGTVLDLNYV 179
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
EDS VD N +MT SG VE+QG+ E ATFS+ ++ L K I++LI++QK+ + +
Sbjct: 180 EDSAAQVDMNIIMTGSGAFVELQGTGEEATFSETELAELIALGKKGISELIEIQKETLGD 239
Query: 241 EV 242
+V
Sbjct: 240 KV 241
>gi|270157357|ref|ZP_06186014.1| ribonuclease PH [Legionella longbeachae D-4968]
gi|289164250|ref|YP_003454388.1| Ribonuclease PH (RNase PH) (tRNA nucleotidyltransferase)
[Legionella longbeachae NSW150]
gi|269989382|gb|EEZ95636.1| ribonuclease PH [Legionella longbeachae D-4968]
gi|288857423|emb|CBJ11251.1| Ribonuclease PH (RNase PH) (tRNA nucleotidyltransferase)
[Legionella longbeachae NSW150]
Length = 235
Score = 171 bits (433), Expect = 7e-41, Method: Composition-based stats.
Identities = 117/237 (49%), Positives = 159/237 (67%), Gaps = 2/237 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR S R+ NQ+R I LTR +K+AEGS LV+FG T +L A++ E VP +I+ GW+T
Sbjct: 1 MRPSNREANQLRPIQLTRNYTKHAEGSVLVEFGQTKVLCNASVTEGVPRFIKGKNQGWVT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPR+T +R +REA G+QGGR+ EIQR+IGR+LR+ VDL LG I +DCDVIQ
Sbjct: 61 AEYGMLPRATHSRTEREASKGKQGGRTMEIQRLIGRSLRACVDLKFLGENTITLDCDVIQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTAAITG+ VA+ D + M + ++AA+S G+ G ++DLDY
Sbjct: 121 ADGGTRTAAITGSCVAMRDAISWMVERE--KIRRMPAFNYIAAVSVGLYRGQAVLDLDYA 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED + D N VM ++GH +E+QG+AE F+++ ML LA+ I LI++QK
Sbjct: 179 EDVLAETDMNVVMNEAGHFIEIQGTAEDRHFNREELNNMLALAEIGIPQLIEIQKKA 235
>gi|124267890|ref|YP_001021894.1| tRNA nucleotidyltransferase [Methylibium petroleiphilum PM1]
gi|124260665|gb|ABM95659.1| tRNA nucleotidyltransferase [Methylibium petroleiphilum PM1]
Length = 241
Score = 171 bits (433), Expect = 7e-41, Method: Composition-based stats.
Identities = 121/235 (51%), Positives = 161/235 (68%), Gaps = 2/235 (0%)
Query: 6 RQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGM 65
R + +R +++TRR +K+AEGS L+ FGDT +L TA++EEKVP R + GW+TAEYGM
Sbjct: 9 RAADALRPLTITRRYTKHAEGSVLIAFGDTKVLCTASVEEKVPPHKRGSGEGWVTAEYGM 68
Query: 66 LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125
LPRST R REA G+Q GR+QEIQR+IGR+LR+V DL ALG R I +DCDV+QADGGT
Sbjct: 69 LPRSTHTRSDREAARGKQSGRTQEIQRLIGRSLRAVFDLKALGERSIHLDCDVLQADGGT 128
Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185
RTAAITGA+VA HD + + ++ VAA+S G++ G P++DL+Y EDS
Sbjct: 129 RTAAITGAYVAAHDAVTWLLAQGKIGAS--PIREPVAAVSVGIVQGTPLLDLEYIEDSAC 186
Query: 186 DVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
D D N VMT +GH +EVQG+AE A FS+ +L LA+ I L+ Q + +
Sbjct: 187 DTDMNVVMTGAGHFIEVQGTAEGAAFSRAEMDRLLALAEQGIRTLVAAQAAALKD 241
>gi|8102038|gb|AAF72714.1|AF263927_2 ribonuclease PH [Carnobacterium sp. St2]
Length = 364
Score = 171 bits (433), Expect = 7e-41, Method: Composition-based stats.
Identities = 110/241 (45%), Positives = 152/241 (63%), Gaps = 3/241 (1%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR + R+ +++R +++ K+ EGS LV FGDT ++ AT+E KVP ++R GW+
Sbjct: 1 MRTNTRKNDELRLVTIETNYLKHPEGSVLVSFGDTKVICNATVEPKVPPFMRGQGKGWVH 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEY MLPR+T R REA G+ GR+ EIQR+I R+LRSV+DL LG R I +DCDVIQ
Sbjct: 61 AEYAMLPRATNTRTIREAAKGKLTGRTMEIQRLIARSLRSVIDLEKLGERAITVDCDVIQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG-YPIVDLDY 179
ADGGTRTA+ITGA+VAL +Q + D +K ++AA+S G+ ++DLDY
Sbjct: 121 ADGGTRTASITGAFVALKMAIQTLLDS--GQLTEDPVKENIAAVSVGITKQGEAVLDLDY 178
Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
EDS+ VD N MT +G E+QG+ E ATFS D ML L K + +L ++Q +
Sbjct: 179 LEDSSAAVDMNLFMTANGEFFELQGTGEEATFSNDQLMEMLELGKKGLNELFQIQTQALK 238
Query: 240 N 240
Sbjct: 239 E 239
>gi|332978052|gb|EGK14790.1| tRNA nucleotidyltransferase [Desmospora sp. 8437]
Length = 289
Score = 171 bits (433), Expect = 7e-41, Method: Composition-based stats.
Identities = 113/240 (47%), Positives = 157/240 (65%), Gaps = 2/240 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+R+ GRQ N++R++ + K+AEGS L+ GDT ++ TA++EE+VP ++R + GW+T
Sbjct: 31 LRVDGRQYNELRKVEMISDYIKHAEGSVLMCVGDTKVICTASVEERVPPFLRGSGKGWVT 90
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEY MLPR+T +R RE+ G+ GGR+ EIQR+IGR+LRSV+ L LG R I +DCDVIQ
Sbjct: 91 AEYSMLPRATQSRTIRESSKGKVGGRTMEIQRLIGRSLRSVIQLDRLGERTIWLDCDVIQ 150
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+ITGA+VA + + S + +AA S G++ G P +DL Y
Sbjct: 151 ADGGTRTASITGAFVAAAQAIHGLVKS--GALDSVPITDFLAATSVGIVDGQPCLDLCYE 208
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
EDS VD N VMT SG VE+QG+ E + F+ + +L LA LI+LQKDV+
Sbjct: 209 EDSKAKVDMNVVMTGSGKYVEIQGTGEESPFTPEELHQLLALAGHGTEQLIRLQKDVLQE 268
>gi|326318286|ref|YP_004235958.1| ribonuclease PH [Acidovorax avenae subsp. avenae ATCC 19860]
gi|323375122|gb|ADX47391.1| ribonuclease PH [Acidovorax avenae subsp. avenae ATCC 19860]
Length = 253
Score = 171 bits (433), Expect = 7e-41, Method: Composition-based stats.
Identities = 118/238 (49%), Positives = 158/238 (66%), Gaps = 2/238 (0%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R +GR + +R + +TR + +AEGS LV+FG T +L TA++EE+VP R + GW+TA
Sbjct: 12 RSAGRGVDALRPVRITRHYTMHAEGSVLVEFGHTKVLCTASVEERVPPHKRGSGEGWVTA 71
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
EYGMLPR+T R REA G+Q GR+QEIQR+IGR+LR+V DL ALG R I +DCDV+QA
Sbjct: 72 EYGMLPRATHTRSDREAARGKQSGRTQEIQRLIGRSLRAVFDLRALGERTIQLDCDVLQA 131
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
DGGTRTAAITGAWVA HD + + + +AA+S G++ G P++DL+Y E
Sbjct: 132 DGGTRTAAITGAWVAAHDAVSALLAGGKIAAS--PITAPLAAVSVGIVQGTPLLDLEYTE 189
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
D D D N VM D G VEVQG+AE F++ +L+LA + LI LQ+ +S
Sbjct: 190 DVQCDTDMNVVMMDGGRFVEVQGTAEGVAFTRSEMDRLLDLAAQGVDALIALQRQALS 247
>gi|262201910|ref|YP_003273118.1| ribonuclease PH [Gordonia bronchialis DSM 43247]
gi|262085257|gb|ACY21225.1| ribonuclease PH [Gordonia bronchialis DSM 43247]
Length = 251
Score = 171 bits (433), Expect = 7e-41, Method: Composition-based stats.
Identities = 111/238 (46%), Positives = 157/238 (65%), Gaps = 1/238 (0%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R GR ++++R IS TR + + GS LV+FG T ++ TA++ + VP W R + GW+TA
Sbjct: 4 RADGRADDELRPISFTRGFTSHPAGSVLVEFGQTRVMCTASVNDGVPPWRRGSGLGWLTA 63
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
EY MLP +T R RE+V GR GGR+ EI R++GR+LR+ +DL ALG I +DCDV+QA
Sbjct: 64 EYAMLPAATHERSSRESVKGRVGGRTHEISRLVGRSLRACIDLGALGENTIALDCDVLQA 123
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
DGGTRTAAITGA+VAL D + + K Q L +AA+S G++ G +DL Y E
Sbjct: 124 DGGTRTAAITGAYVALADAVTWLRAAG-KLSDPQPLSCAIAAVSVGVVDGRVRLDLPYEE 182
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
DS +VD N V TD+G +VEVQG+ E ATF++ A+L++A L + Q++V++
Sbjct: 183 DSRAEVDMNVVATDAGTLVEVQGTGEGATFARSTLDALLDVAAVGTEKLFEAQREVLA 240
>gi|297571668|ref|YP_003697442.1| ribonuclease PH [Arcanobacterium haemolyticum DSM 20595]
gi|296932015|gb|ADH92823.1| ribonuclease PH [Arcanobacterium haemolyticum DSM 20595]
Length = 246
Score = 171 bits (433), Expect = 8e-41, Method: Composition-based stats.
Identities = 110/240 (45%), Positives = 152/240 (63%), Gaps = 2/240 (0%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R GR N++R + +TR EGS LV+FG+T +L A+ E VP W +++ GW+T
Sbjct: 6 RADGRATNELRPVKITRNFLDAGEGSVLVEFGNTKVLCVASFTEGVPRWRKDSGLGWVTG 65
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
EY MLPR+T R +RE+V G+ GR+QEI R++GRALR+VVD+SALG I++DCDV+QA
Sbjct: 66 EYSMLPRATSTRNQRESVKGKVSGRTQEISRLVGRALRAVVDMSALGDNTIVLDCDVLQA 125
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQL--SQVLKGHVAAISCGMLCGYPIVDLDY 179
DGGTRTA+ITGA+VAL D + + + VL+ VAAIS G++ G P +DL Y
Sbjct: 126 DGGTRTASITGAYVALADAVAWGIERGHIKPRAGKPVLRDSVAAISVGIIDGVPCLDLPY 185
Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
ED + D N VMT +G +EVQG+AE F + +L+LA +L Q D +
Sbjct: 186 EEDVRAETDMNVVMTGTGKFIEVQGTAEGEPFDRTELGQLLDLATAGCQELTSKQNDALG 245
>gi|255324313|ref|ZP_05365434.1| tRNA nucleotidyltransferase [Corynebacterium tuberculostearicum
SK141]
gi|255298643|gb|EET77939.1| tRNA nucleotidyltransferase [Corynebacterium tuberculostearicum
SK141]
Length = 242
Score = 171 bits (433), Expect = 8e-41, Method: Composition-based stats.
Identities = 104/238 (43%), Positives = 153/238 (64%), Gaps = 2/238 (0%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R GR +QMR + +TR + GS LV+FG+T ++ TA++E VP + R++ GW+TA
Sbjct: 6 RADGRALDQMRSVRITRNFTTNPAGSVLVEFGNTRVMCTASVEYGVPRFKRDSGEGWLTA 65
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
EY MLP +T +R+ RE++ G+ GR+ EI R++GR+LR+ VDL LG I +DCDV+QA
Sbjct: 66 EYAMLPSATHDRMPRESMKGKVKGRTHEISRLVGRSLRAAVDLEELGENTIQLDCDVLQA 125
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
DGGTRTA+ITGA+VAL D + H++ + L +AA+S G++ G +DL Y E
Sbjct: 126 DGGTRTASITGAYVALADAIAHLKAE--GVVPGEPLLDSIAAVSVGIIDGEICLDLPYEE 183
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
DS +VD N VM +SG VE+QG+ E F ++ ML++A+ +LI QK +
Sbjct: 184 DSRAEVDLNVVMQESGDFVEIQGTGEHGLFGREDLNEMLDVAQKGCRELIAAQKAALG 241
>gi|74316495|ref|YP_314235.1| RNAse PH [Thiobacillus denitrificans ATCC 25259]
gi|74055990|gb|AAZ96430.1| ribonuclease PH [Thiobacillus denitrificans ATCC 25259]
Length = 244
Score = 171 bits (433), Expect = 8e-41, Method: Composition-based stats.
Identities = 121/239 (50%), Positives = 156/239 (65%), Gaps = 2/239 (0%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R SGR + +R + TRR +K+AEGS LV GDT +L TA++ +KVP + + GW+TA
Sbjct: 7 RPSGRAPDALRALRFTRRFTKHAEGSVLVAMGDTQVLCTASVVDKVPPHKKGSGEGWVTA 66
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
EYGMLPRST R REA G+Q GR+QEIQR+IGR+LR+VVDL LG R + IDCDV+QA
Sbjct: 67 EYGMLPRSTHTRSDREAARGKQSGRTQEIQRLIGRSLRAVVDLKKLGERTLHIDCDVLQA 126
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
DGGTR A+I GA+VA+ D + + + V VAA+S G+ G P++DLDY E
Sbjct: 127 DGGTRCASICGAYVAVADAVSWLVREGALVETPLVDS--VAAVSVGVYQGQPVLDLDYLE 184
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
DS D D N VMT SG IVEVQG+AE FS+ A+L+LA IA + Q +
Sbjct: 185 DSACDTDMNVVMTGSGGIVEVQGTAEGVAFSRTTLEALLDLATAGIAQISAEQVRTLGQ 243
>gi|237736793|ref|ZP_04567274.1| ribonuclease PH [Fusobacterium mortiferum ATCC 9817]
gi|229420655|gb|EEO35702.1| ribonuclease PH [Fusobacterium mortiferum ATCC 9817]
Length = 255
Score = 171 bits (433), Expect = 8e-41, Method: Composition-based stats.
Identities = 108/240 (45%), Positives = 159/240 (66%), Gaps = 2/240 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+R GR +++R + T+ + YAEGS L++ G+T ++ TAT+ +KVP +++N GW+T
Sbjct: 18 LREDGRDVDELRVLKATKDFNLYAEGSVLMECGNTKVICTATVSDKVPPFLKNQGKGWLT 77
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEY M+PR+TG R +RE+ G+ GR+ EIQR+IGRALR+ VDL LG R I IDCDVIQ
Sbjct: 78 AEYSMIPRATGERNQRESAKGKLTGRTMEIQRLIGRALRTAVDLEKLGERTITIDCDVIQ 137
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRT +ITG ++AL ++ + + +VAAIS G++ G P++DL Y
Sbjct: 138 ADGGTRTTSITGGYIALALAMKKLVAE--GVLAENPIISNVAAISVGIVNGTPVLDLKYT 195
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
EDS +VD N VM G VEVQG+ E AT+++ ML+LA+ + ++++LQ +I
Sbjct: 196 EDSAAEVDMNVVMNGEGKFVEVQGTGEEATYTRKELNEMLDLAEKGLKEIMELQNRIIGE 255
>gi|239622472|ref|ZP_04665503.1| ribonuclease PH [Bifidobacterium longum subsp. infantis CCUG 52486]
gi|61216065|sp|Q8G7I0|RNPH_BIFLO RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|239514469|gb|EEQ54336.1| ribonuclease PH [Bifidobacterium longum subsp. infantis CCUG 52486]
Length = 248
Score = 171 bits (432), Expect = 8e-41, Method: Composition-based stats.
Identities = 107/239 (44%), Positives = 157/239 (65%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+R GR+ +++R + +TR + EGS L++ G+T ++ TAT VP W +++ GW+T
Sbjct: 8 IRADGRKVDELRPVRITRHFTDAPEGSVLIECGNTRVMCTATFTPGVPRWRKDSGLGWVT 67
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEY MLPR+T R RE+V G+ GGR+ EI R+IGR LR V+D+ ALG QI +DCDV+Q
Sbjct: 68 AEYSMLPRATAERTDRESVRGKIGGRTHEISRLIGRCLRGVIDMKALGENQIQLDCDVLQ 127
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA++TGA+VAL D + E + S+VLK +V+A+S G++ G P++DL Y
Sbjct: 128 ADGGTRTASVTGAYVALVDAVNWAEKHRHIKSASRVLKDYVSAVSVGVINGTPMLDLPYI 187
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
EDS D N MT SG +E+QG+AE F++ +L+LA+ +L Q+ +S
Sbjct: 188 EDSQAMTDMNVAMTGSGTFIEIQGTAEHRPFNRAELGTLLDLAEKGNKELQAAQRAALS 246
>gi|329936575|ref|ZP_08286311.1| ribonuclease [Streptomyces griseoaurantiacus M045]
gi|329304090|gb|EGG47972.1| ribonuclease [Streptomyces griseoaurantiacus M045]
Length = 244
Score = 171 bits (432), Expect = 8e-41, Method: Composition-based stats.
Identities = 115/229 (50%), Positives = 148/229 (64%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R+ GR Q+R +SL R SK+AEGS LV FGDT +L TA+ E VP W + + GW+TA
Sbjct: 3 RIDGRAPEQLRPVSLARGWSKHAEGSVLVAFGDTRVLCTASFTEGVPRWRKGSGEGWVTA 62
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
EY MLPR+T R RE+V GR GGR+ EI R+IGR+LR+V+D ALG I++DCDV+QA
Sbjct: 63 EYSMLPRATNTRGDRESVRGRIGGRTHEISRLIGRSLRAVIDYKALGENTIVLDCDVLQA 122
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
DGGTRTAAITGA+VAL D + + + L V+A+S G++ G P++DL Y E
Sbjct: 123 DGGTRTAAITGAYVALADAVSWAQGRKLIKAGRRPLTDTVSAVSVGIVGGAPLLDLCYEE 182
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADL 230
D D D N V T G VEVQG+AE F + A+L+LA DL
Sbjct: 183 DVRADTDMNVVCTGDGRFVEVQGTAEAEPFDRKELNALLDLAVAGCGDL 231
>gi|307244059|ref|ZP_07526178.1| tRNA nucleotidyltransferase [Peptostreptococcus stomatis DSM 17678]
gi|306492583|gb|EFM64617.1| tRNA nucleotidyltransferase [Peptostreptococcus stomatis DSM 17678]
Length = 486
Score = 171 bits (432), Expect = 9e-41, Method: Composition-based stats.
Identities = 103/239 (43%), Positives = 155/239 (64%), Gaps = 2/239 (0%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R GRQ +Q+R +++TR + ++ GS L++ G+T ++ TA++E+ VP +++ T GWI+A
Sbjct: 37 RPDGRQYDQLRPVNITRNYTMHSAGSVLIEVGNTKVICTASVEDGVPGFMKGTGKGWISA 96
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
EY MLP +T R +R++ GR GRSQEIQR+IGR++RSVV+L LG R I IDCDVIQA
Sbjct: 97 EYSMLPSATETRKRRDSSKGRVDGRSQEIQRLIGRSIRSVVNLEDLGERTIWIDCDVIQA 156
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
DGGTRTA+ITGA+VAL D L + L +AA+S G++ +D+ Y E
Sbjct: 157 DGGTRTASITGAFVALADAL--YKLYQAGDIKKMPLTSMLAAVSVGVVDSQVCLDICYQE 214
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
DS +VD N +M + G +E+Q + E F++D +L A+ DL+++Q+ V+
Sbjct: 215 DSNAEVDTNIIMNNKGQFIEIQCTGEERPFTRDEMDKILEYAEKGNRDLMRIQRRVLGE 273
>gi|227542822|ref|ZP_03972871.1| ribonuclease PH [Corynebacterium glucuronolyticum ATCC 51866]
gi|227181448|gb|EEI62420.1| ribonuclease PH [Corynebacterium glucuronolyticum ATCC 51866]
Length = 237
Score = 171 bits (432), Expect = 9e-41, Method: Composition-based stats.
Identities = 102/238 (42%), Positives = 156/238 (65%), Gaps = 7/238 (2%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R GR +++RE+ +TR + GS LV+FG T ++ TA+++E VP + +++ GW+TA
Sbjct: 7 RADGRATDELREVRITRNFTTNPAGSVLVEFGRTRVMCTASVQEGVPRFKKDSGEGWLTA 66
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
EY MLP +T R RE+V G+ GR+QEI R++GR+LR+ +DL+ LG I +DCDV+QA
Sbjct: 67 EYAMLPAATNERNPRESVKGKVKGRTQEISRLVGRSLRAAIDLTKLGEYTIALDCDVLQA 126
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
DGGTRTA+ITGA+VAL D L ++ VAAIS G++ G+P +DL Y E
Sbjct: 127 DGGTRTASITGAYVALADALASIDKTDALLP-------PVAAISVGLIDGHPCLDLPYEE 179
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
DS +VD N +M ++G VE+QG+ E FS++ +L+L + +L++ QK+ ++
Sbjct: 180 DSRAEVDMNIIMKENGTFVEIQGTGEHGDFSREQLGTLLDLGEKGCRELVEKQKEALA 237
>gi|220913058|ref|YP_002488367.1| ribonuclease PH [Arthrobacter chlorophenolicus A6]
gi|219859936|gb|ACL40278.1| ribonuclease PH [Arthrobacter chlorophenolicus A6]
Length = 252
Score = 171 bits (432), Expect = 9e-41, Method: Composition-based stats.
Identities = 115/242 (47%), Positives = 162/242 (66%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+R GR +Q+R IS+TR S AEGS L++FG+T +L TA+L VP W++ GW+T
Sbjct: 11 VRADGRAPDQLRPISITRGWSNQAEGSALIEFGNTRVLCTASLTAGVPRWLKGEGRGWVT 70
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEY MLPR+T R RE+V G+ GGR+ EI R+IGR+LRS++D ALG I++DCDV+Q
Sbjct: 71 AEYAMLPRATNTRSDRESVKGKIGGRTHEISRLIGRSLRSIIDTKALGENTIVLDCDVLQ 130
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTAAITGA+VAL D ++ D + +Q L +AA+S G++ G P++DL Y
Sbjct: 131 ADGGTRTAAITGAYVALADAIRFARDNKLIARNAQPLTDTIAAVSVGIIDGVPMLDLPYV 190
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
ED + D N V+T SG VEVQG+AE A F +D +L+LA L +Q++ +++
Sbjct: 191 EDVRAETDMNVVVTGSGKFVEVQGTAEGAPFDRDELNQLLDLALLGTTQLAAIQRETLAD 250
Query: 241 EV 242
+
Sbjct: 251 TL 252
>gi|114330335|ref|YP_746557.1| ribonuclease PH [Nitrosomonas eutropha C91]
gi|122314626|sp|Q0AJ79|RNPH_NITEC RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|114307349|gb|ABI58592.1| RNAse PH [Nitrosomonas eutropha C91]
Length = 242
Score = 171 bits (432), Expect = 9e-41, Method: Composition-based stats.
Identities = 123/238 (51%), Positives = 168/238 (70%), Gaps = 2/238 (0%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R + R QMR I +TR ++AEGS L+++G+T ++ TA++ EKVP +++ GW+TA
Sbjct: 3 RYNHRTLAQMRPIRITRHYIRHAEGSVLIEYGETKVICTASVIEKVPPFLKGAGQGWLTA 62
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
EYGMLPRSTG R++REA G+Q GR+ EIQR+IGRALRSV+DL LG R I IDCDVIQA
Sbjct: 63 EYGMLPRSTGERMQREAAKGKQSGRTMEIQRLIGRALRSVLDLKKLGERTIQIDCDVIQA 122
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
DGGTRTA+ITGA+VAL D + ++ K +K HVAA+S G+L G P++DLDY E
Sbjct: 123 DGGTRTASITGAFVALCDAVGYLRAE--KIISENPIKDHVAAVSVGILKGQPLLDLDYAE 180
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
DS+ D D N VMT + +VEVQG+AE+ FS+ ML++A+ + +L LQ+ +
Sbjct: 181 DSSCDTDLNVVMTGNLGLVEVQGTAEKVVFSRQELDVMLDMAQQGLQELFDLQRKTLE 238
>gi|330826509|ref|YP_004389812.1| ribonuclease PH [Alicycliphilus denitrificans K601]
gi|329311881|gb|AEB86296.1| Ribonuclease PH [Alicycliphilus denitrificans K601]
Length = 245
Score = 171 bits (432), Expect = 9e-41, Method: Composition-based stats.
Identities = 127/239 (53%), Positives = 167/239 (69%), Gaps = 2/239 (0%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R GR +++R + +TRR + +AEGS L++FG+T +L TA++EEKVP R + GW+TA
Sbjct: 9 RSGGRAPDELRPVRITRRYTMHAEGSVLIEFGNTRVLCTASVEEKVPPHKRGSGSGWVTA 68
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
EYGMLPRST R REA G+Q GR+QEIQR+IGR+LR+V DL ALG R + IDCDVIQA
Sbjct: 69 EYGMLPRSTHTRSDREAARGKQSGRTQEIQRLIGRSLRAVFDLKALGERTLQIDCDVIQA 128
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
DGGTRTAAITGAWVA HD + + + G VAA+S G++ G P++DL+Y E
Sbjct: 129 DGGTRTAAITGAWVAAHDAVGTLLAAGKVAAS--PITGAVAAVSVGIVQGQPLLDLEYVE 186
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
D D D N VMT +GH VEVQG+AE A FS+ +L LA+ IA+L+ LQ++ + N
Sbjct: 187 DVACDTDMNVVMTGTGHYVEVQGTAEGAAFSRREMDQLLALAEKGIAELMLLQQESLRN 245
>gi|254445470|ref|ZP_05058946.1| ribonuclease PH [Verrucomicrobiae bacterium DG1235]
gi|198259778|gb|EDY84086.1| ribonuclease PH [Verrucomicrobiae bacterium DG1235]
Length = 252
Score = 171 bits (432), Expect = 1e-40, Method: Composition-based stats.
Identities = 109/243 (44%), Positives = 151/243 (62%), Gaps = 4/243 (1%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIR--NTKHGWI 59
R GR+ + +REIS + A GS LV FGDT ++ A LE++VP W+R N GW+
Sbjct: 6 RPDGRKCDALREISFQADFAANATGSVLVSFGDTKVICGAMLEKRVPGWMRAQNVSGGWL 65
Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119
TAEY MLP ST +R +R+A G+Q GR EIQR+IGR+LR+V+DL L + +DCDV+
Sbjct: 66 TAEYSMLPYSTLDRKQRDASRGKQDGRGVEIQRLIGRSLRAVIDLQKLPGHTLWVDCDVL 125
Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179
QADGGTRTA+ITGA++A +Q + D + +AA+S G+ G P++DL Y
Sbjct: 126 QADGGTRTASITGAYLAARLAVQKLIDA--GTLKENPFRDSIAAVSVGIYEGEPVLDLPY 183
Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
ED VD N VMT G VE+QG+ E ATFS+D ++ LAK I +L +Q ++
Sbjct: 184 IEDRDASVDFNVVMTGKGEFVELQGTGEEATFSEDELAKLIGLAKKGIKELSSMQAAFLT 243
Query: 240 NEV 242
+
Sbjct: 244 QRL 246
>gi|258516735|ref|YP_003192957.1| ribonuclease PH [Desulfotomaculum acetoxidans DSM 771]
gi|257780440|gb|ACV64334.1| ribonuclease PH [Desulfotomaculum acetoxidans DSM 771]
Length = 244
Score = 170 bits (431), Expect = 1e-40, Method: Composition-based stats.
Identities = 117/239 (48%), Positives = 161/239 (67%), Gaps = 4/239 (1%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R+ GR+ ++MR++ +TR +KYAEGS L++ GDTH+L TAT+E+KVP ++R GW+TA
Sbjct: 3 RVDGRKPDEMRQVRMTRNFNKYAEGSVLIEVGDTHVLCTATVEDKVPPFLRGANKGWVTA 62
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
EY MLPR+T R R G+ GR+ EIQR+IGRALRSVV+L ALG R +++DCDV+QA
Sbjct: 63 EYAMLPRATDLRTGR--ERGKVSGRTMEIQRLIGRALRSVVNLEALGERTVLVDCDVLQA 120
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
DGGTRTA+ITGA+VA+ D L + N +K +AA S G + ++DL Y E
Sbjct: 121 DGGTRTASITGAFVAMTDAL--YKLAVNGQIKKFPIKEFIAATSVGRVNNEMVLDLCYKE 178
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
DS +VD N VMT VE+QG+ E ATFS+ ++L+LA I LI Q +V+ +
Sbjct: 179 DSAAEVDMNIVMTGGDRFVEIQGTGEEATFSRAEVNSLLDLAAGGIKSLIAFQSEVLGS 237
>gi|271963272|ref|YP_003337468.1| tRNA nucleotidyltransferase [Streptosporangium roseum DSM 43021]
gi|270506447|gb|ACZ84725.1| tRNA nucleotidyltransferase [Streptosporangium roseum DSM 43021]
Length = 238
Score = 170 bits (431), Expect = 1e-40, Method: Composition-based stats.
Identities = 109/238 (45%), Positives = 153/238 (64%), Gaps = 2/238 (0%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R GR +Q+R +++TR +AEGS LV+FG T +L A++++ VP W R + GW+TA
Sbjct: 3 RADGRSPDQLRPVTITRGWLAHAEGSVLVEFGGTKVLCAASVQDSVPRWRRGSGQGWVTA 62
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
EY MLPR+T R RE+V G+ GGR+ EI R+IGR+LR+ VD LG I+IDCDV+QA
Sbjct: 63 EYAMLPRATNTRNDRESVRGKIGGRTHEISRLIGRSLRACVDYKTLGENSIVIDCDVLQA 122
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
DGGTRTAAITGA+VAL D + M + + V+A+S G++ P++DL Y E
Sbjct: 123 DGGTRTAAITGAYVALADAVAWMRERKMCKGDPLIDS--VSAVSVGVVGSTPLLDLCYTE 180
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
D + D N VMT SG VEVQG+AE F + +L+L A+L +LQ++ ++
Sbjct: 181 DVAAETDMNVVMTGSGAFVEVQGTAEGKPFDRGALDELLDLGVAGCAELTRLQRETLA 238
>gi|261365535|ref|ZP_05978418.1| tRNA nucleotidyltransferase [Neisseria mucosa ATCC 25996]
gi|288565953|gb|EFC87513.1| tRNA nucleotidyltransferase [Neisseria mucosa ATCC 25996]
Length = 246
Score = 170 bits (431), Expect = 1e-40, Method: Composition-based stats.
Identities = 115/234 (49%), Positives = 164/234 (70%), Gaps = 2/234 (0%)
Query: 6 RQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGM 65
R + +R+I +T +A+GSCL++ G+T ++ TA+++E VP ++R GW+TAEYGM
Sbjct: 9 RDADSLRDIKITPNFLPHADGSCLIECGNTKVICTASIDENVPPFLRGKGQGWVTAEYGM 68
Query: 66 LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125
LP ST +R++REA +G+Q GR+QEIQR+IGR+LR+VVD+ LG RQI+IDCDVIQADGGT
Sbjct: 69 LPASTASRMRREAAAGKQSGRTQEIQRLIGRSLRAVVDMEKLGERQILIDCDVIQADGGT 128
Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185
RTA+ITGA+VAL + + ++ VAA+S G++ G P++DLDY EDS
Sbjct: 129 RTASITGAFVALQIAVNKLISDD--LISENPIREAVAAVSAGVVGGVPLLDLDYPEDSGC 186
Query: 186 DVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
D D N VMT SG I+E+QG+AE A FS D ++ LA+ IA+L Q++ +
Sbjct: 187 DSDVNIVMTASGKIIEIQGTAEGAPFSLDELGKLIALAQKGIAELTAHQQNALK 240
>gi|315302796|ref|ZP_07873561.1| ribonuclease PH [Listeria ivanovii FSL F6-596]
gi|313628833|gb|EFR97201.1| ribonuclease PH [Listeria ivanovii FSL F6-596]
Length = 248
Score = 170 bits (431), Expect = 1e-40, Method: Composition-based stats.
Identities = 110/242 (45%), Positives = 156/242 (64%), Gaps = 1/242 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR+ GR+ N +R+I +T + EGS L+ G+T ++ +A++E KVP ++R GWI+
Sbjct: 1 MRVDGRESNALRKIEVTPDYLMHPEGSVLIASGNTKVICSASVETKVPPFMRGEGRGWIS 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEY MLPR+T R RE+ G+ GR+ EIQR+IGRALR+VVDL ALG R I +DCDVIQ
Sbjct: 61 AEYAMLPRATNTRNIRESSKGKVTGRTMEIQRLIGRALRAVVDLEALGERTIWLDCDVIQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+ITGA++A+ + ++ F V A + G ++DL+Y
Sbjct: 121 ADGGTRTASITGAFIAMVMAIAKLDAEVP-FTKFPVKDFLAATSVGVLEEGGTVLDLNYI 179
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
EDS VD N +MT SG VE+QG+ E ATFS+ ++ L K IA+LI++QK+ +
Sbjct: 180 EDSAAQVDMNIIMTGSGAFVELQGTGEEATFSEAELAELIALGKKGIAELIEIQKETLGE 239
Query: 241 EV 242
+V
Sbjct: 240 KV 241
>gi|113866973|ref|YP_725462.1| ribonuclease PH [Ralstonia eutropha H16]
gi|123134290|sp|Q0KD27|RNPH_RALEH RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|113525749|emb|CAJ92094.1| Ribonuclease PH [Ralstonia eutropha H16]
Length = 239
Score = 170 bits (431), Expect = 1e-40, Method: Composition-based stats.
Identities = 128/239 (53%), Positives = 167/239 (69%), Gaps = 2/239 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR SGR + +R ISLTR +++AEGS L FGDT +L TA++ KVP + + GW+T
Sbjct: 1 MRPSGRAADALRSISLTRHYTRHAEGSVLCAFGDTKVLCTASVLAKVPPHKKGSGEGWVT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPR+T R REA G+Q GR+QEIQR+IGRA+RSV DL+ALG + +DCDV+Q
Sbjct: 61 AEYGMLPRATHTRSDREAARGKQTGRTQEIQRLIGRAMRSVFDLAALGEYTVHLDCDVLQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTAAITGA+VA HD + M + + ++ HVAA+S GM+ G P++DLDY
Sbjct: 121 ADGGTRTAAITGAFVAAHDAVSTM--LRDGLIAASPIRDHVAAVSVGMVDGVPVLDLDYA 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
EDS+ D D N VMT SG VEVQG+AE A FS+ AM LA+ IA L++ Q++ +
Sbjct: 179 EDSSCDTDMNVVMTGSGGFVEVQGTAEGAPFSRADLDAMTRLAEAGIARLVQHQREALG 237
>gi|315282015|ref|ZP_07870521.1| ribonuclease PH [Listeria marthii FSL S4-120]
gi|313614342|gb|EFR87980.1| ribonuclease PH [Listeria marthii FSL S4-120]
Length = 248
Score = 170 bits (431), Expect = 1e-40, Method: Composition-based stats.
Identities = 110/242 (45%), Positives = 154/242 (63%), Gaps = 1/242 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR GR+ N +R I +T + EGS L+ G+T ++ +A++E KVP ++R GWI+
Sbjct: 1 MRFDGRESNALRNIEVTPDYLMHPEGSVLIASGNTKVICSASVETKVPPFMRGEGRGWIS 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEY MLPR+T R RE+ G+ GR+ EIQR+IGRALR+VVDL ALG R I +DCDVIQ
Sbjct: 61 AEYSMLPRATNTRNIRESSKGKVTGRTMEIQRLIGRALRAVVDLDALGERTIWLDCDVIQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+ITGA++A+ + + D F V A + G ++DL+Y
Sbjct: 121 ADGGTRTASITGAFIAMVMAIAKL-DEETPFTKFPVKDFLAATSVGVLEEGGTVLDLNYV 179
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
EDS VD N +MT SG VE+QG+ E ATFS+ ++ L K I++LI++QK+ +
Sbjct: 180 EDSAAQVDMNIIMTGSGAFVELQGTGEEATFSEAELAELIALGKKGISELIEIQKETLGE 239
Query: 241 EV 242
+V
Sbjct: 240 KV 241
>gi|187734903|ref|YP_001877015.1| ribonuclease PH [Akkermansia muciniphila ATCC BAA-835]
gi|187424955|gb|ACD04234.1| ribonuclease PH [Akkermansia muciniphila ATCC BAA-835]
Length = 270
Score = 170 bits (431), Expect = 1e-40, Method: Composition-based stats.
Identities = 109/242 (45%), Positives = 150/242 (61%), Gaps = 4/242 (1%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIR--NTKHGWI 59
R R +Q+R IS ++ A S LV FG T ++ T+EE VP W++ + GW+
Sbjct: 12 RQDKRLVDQLRPISFETGIAPNATASVLVTFGRTKVICAVTIEEDVPRWMKVQRVEGGWL 71
Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119
TAEY MLP ST +R +R+ +G+ GRS EIQR+IGR+LR+ VDL +G R I +DCDV+
Sbjct: 72 TAEYSMLPYSTLDRKRRDITAGKLDGRSSEIQRLIGRSLRAAVDLGKIGQRTIWVDCDVL 131
Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179
QADGGTRTA+ITGA VAL + + + +K V+A+S G+L G ++DL Y
Sbjct: 132 QADGGTRTASITGASVALAIAVNKLVAEGKLAES--PMKRLVSAVSVGILEGEALLDLCY 189
Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
ED +VD N VMTD G VEVQGS E A F+ D ML L + + ++ +LQ+ VI+
Sbjct: 190 VEDKDAEVDMNLVMTDQGEFVEVQGSGEEAVFTADQMNRMLELGRKGLEEIAELQRQVIA 249
Query: 240 NE 241
E
Sbjct: 250 EE 251
>gi|319943444|ref|ZP_08017726.1| tRNA nucleotidyltransferase [Lautropia mirabilis ATCC 51599]
gi|319743259|gb|EFV95664.1| tRNA nucleotidyltransferase [Lautropia mirabilis ATCC 51599]
Length = 253
Score = 170 bits (430), Expect = 1e-40, Method: Composition-based stats.
Identities = 115/243 (47%), Positives = 154/243 (63%), Gaps = 3/243 (1%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R GR + +R + RR +++AEGS LV FGDT +L TA++ + VP ++R GW+TA
Sbjct: 9 RHDGRALDGLRPVRFQRRFTRHAEGSVLVSFGDTRVLCTASVLDSVPPFLRGKGQGWVTA 68
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
EYGMLPR+T R REA G+Q GR+QEIQR+IGR+LR+V DL LG R I +DCDV+QA
Sbjct: 69 EYGMLPRATHTRSDREAARGKQSGRTQEIQRLIGRSLRAVTDLKRLGERTIHLDCDVLQA 128
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQ---VLKGHVAAISCGMLCGYPIVDLD 178
DGGTRTAAITGAWVAL D + + V V ++ ++DLD
Sbjct: 129 DGGTRTAAITGAWVALRDAVNGLLAAGKLTSDPLREAVAAISVGIVALPGAAPACVLDLD 188
Query: 179 YGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
Y EDS + D N VMT SG +VE+QG+AE A FS+ +L+LA I +L++LQ+ +
Sbjct: 189 YQEDSGCETDMNVVMTASGGLVEIQGTAEGAPFSRQQASELLDLAAKGIDELVRLQRAAL 248
Query: 239 SNE 241
E
Sbjct: 249 QEE 251
>gi|57233914|ref|YP_182001.1| ribonuclease PH [Dehalococcoides ethenogenes 195]
gi|123618391|sp|Q3Z6Z8|RNPH_DEHE1 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|57224362|gb|AAW39419.1| ribonuclease PH [Dehalococcoides ethenogenes 195]
Length = 239
Score = 170 bits (430), Expect = 1e-40, Method: Composition-based stats.
Identities = 110/236 (46%), Positives = 151/236 (63%), Gaps = 2/236 (0%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R GR NQ+R I++T +AEGS L++ G T ++ + ++E+KVP ++RN+ GW+TA
Sbjct: 3 RGDGRNFNQLRPITITPGFQSFAEGSVLIEQGKTRVICSVSMEDKVPQFLRNSGTGWVTA 62
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
EY MLPRST R +R++ +G+ GRSQEIQR+IGR+LRS VDL+ALG R IIDCDVIQA
Sbjct: 63 EYSMLPRSTVTRTQRDSSAGKISGRSQEIQRLIGRSLRSCVDLAALGERSFIIDCDVIQA 122
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
D GTRTA+ITGA++AL+ + M D VAA+S + G ++D Y E
Sbjct: 123 DAGTRTASITGAYIALYLAFKKMVD--MGILSKMPFTSQVAAVSVSIFKGNIVLDPCYDE 180
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
D +VD N VM D VE+QG+AE TFS+D +L L + I L +Q +
Sbjct: 181 DFQAEVDFNLVMNDRAEFVEIQGTAEGKTFSRDTLDQVLKLGEAGIWQLFDIQNSI 236
>gi|227833921|ref|YP_002835628.1| ribonuclease PH [Corynebacterium aurimucosum ATCC 700975]
gi|262184924|ref|ZP_06044345.1| ribonuclease PH [Corynebacterium aurimucosum ATCC 700975]
gi|227454937|gb|ACP33690.1| ribonuclease PH [Corynebacterium aurimucosum ATCC 700975]
Length = 242
Score = 170 bits (430), Expect = 1e-40, Method: Composition-based stats.
Identities = 102/238 (42%), Positives = 153/238 (64%), Gaps = 2/238 (0%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R GR +Q+R + +TR + GS LV+FG+T ++ TA++E VP + +++ GW+TA
Sbjct: 6 RADGRALDQLRSVRITRNFTTNPAGSVLVEFGNTRVMCTASVEFGVPRFKKDSGEGWLTA 65
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
EY MLP +T R+ RE++ G+ GR+ EI R++GR+LR+ VDLS LG I +DCDV+QA
Sbjct: 66 EYAMLPSATHERMPRESMKGKVKGRTHEISRLVGRSLRAAVDLSELGENTIQLDCDVLQA 125
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
DGGTRTA+ITGA+VAL D + ++++ + L +AA+S G++ G+ +DL Y E
Sbjct: 126 DGGTRTASITGAYVALADAIAYLKEE--GVVPGEPLLDPIAAVSVGIIDGHVCLDLPYEE 183
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
DS +VD N VM + G VE+QG+ E F + ML++A+ A LI QK +
Sbjct: 184 DSRAEVDLNVVMQEGGDFVEIQGTGEHGLFGRAELNDMLDVAQAGCAQLIDAQKAALG 241
>gi|310657898|ref|YP_003935619.1| nucleoside-triphosphatase [Clostridium sticklandii DSM 519]
gi|308824676|emb|CBH20714.1| Nucleoside-triphosphatase [Clostridium sticklandii]
Length = 443
Score = 170 bits (430), Expect = 1e-40, Method: Composition-based stats.
Identities = 117/234 (50%), Positives = 163/234 (69%), Gaps = 2/234 (0%)
Query: 9 NQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPR 68
N +REI +T+ +KYAEGS L++FGDT +L A++EEKVP +++NT GWI+AEY MLPR
Sbjct: 6 NMLREIKITKNFTKYAEGSVLIEFGDTVVLCNASIEEKVPPFLKNTGTGWISAEYSMLPR 65
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
ST R R++ G+ GR+ EIQR+IGRALRSVVD+ LG R I IDCDV+QADGGTRTA
Sbjct: 66 STHQRKIRDSARGKIDGRTHEIQRLIGRALRSVVDMKVLGERTIWIDCDVLQADGGTRTA 125
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
+ITGA+VAL D + + + S + V+A+S G++ G P++DL Y EDS+ +VD
Sbjct: 126 SITGAFVALCDAMAKLYEKE--AIKSFPINAFVSAVSVGIVKGKPVLDLCYEEDSSAEVD 183
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNEV 242
N VMTD G +EVQG+ E+ FS++ +L+LA+ L+K+Q+ I +
Sbjct: 184 MNVVMTDKGEFIEVQGTGEQHPFSKNQLMQLLDLAQQGNEQLMKIQRRAIGEPI 237
>gi|77919626|ref|YP_357441.1| ribonuclease PH [Pelobacter carbinolicus DSM 2380]
gi|77545709|gb|ABA89271.1| RNAse PH [Pelobacter carbinolicus DSM 2380]
Length = 244
Score = 170 bits (430), Expect = 1e-40, Method: Composition-based stats.
Identities = 121/238 (50%), Positives = 159/238 (66%), Gaps = 2/238 (0%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R GR +++R I +R ++YAEGS LV FG+T +L AT+EE VP ++R GWITA
Sbjct: 8 RADGRTPSELRPIYFSRGFTRYAEGSVLVSFGETRVLCNATVEEGVPSFLRGQGQGWITA 67
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
EY MLPR+T R REA G+ GGR+ EIQR+IGR+LR++ DL LG R I+IDCDV+QA
Sbjct: 68 EYSMLPRATQVRSAREATRGKVGGRTSEIQRLIGRSLRAICDLEMLGERTILIDCDVLQA 127
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
DGGTRTAAITGA+VALHD + + + L+ V+A+S G++ G+P++DLDY E
Sbjct: 128 DGGTRTAAITGAYVALHDAVYGLVRENQLSDS--PLRDSVSAVSVGLVDGHPLLDLDYAE 185
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
D VD NFV+T SGH VEVQG+AE FS + + NLA DL +LQ +
Sbjct: 186 DFRAAVDMNFVITGSGHFVEVQGTAEERPFSMEELDDLRNLALAGCRDLHRLQLRALE 243
>gi|161551792|ref|YP_148519.2| ribonuclease PH [Geobacillus kaustophilus HTA426]
gi|61215778|sp|Q5KWI5|RNPH_GEOKA RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
Length = 256
Score = 170 bits (430), Expect = 1e-40, Method: Composition-based stats.
Identities = 117/241 (48%), Positives = 153/241 (63%), Gaps = 3/241 (1%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR GR ++R + + K+AEGS L++ GDT ++ TAT+EEKVP ++R GWIT
Sbjct: 1 MRADGRSSCELRPVHIHPHYMKHAEGSVLIEVGDTKVICTATVEEKVPSFMRGGGKGWIT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPR+T R REA G+ GR+ EIQR+IGRALRSVVDL LG R I IDCDVIQ
Sbjct: 61 AEYGMLPRATEQRNVREASKGKVSGRTMEIQRLIGRALRSVVDLEQLGERTIWIDCDVIQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY-PIVDLDY 179
ADGGTRTA+ITGA+VAL L + + ++ +AA S G+ + I+DLDY
Sbjct: 121 ADGGTRTASITGAYVALVLALAKLVEEGRLEA--LPIRDFLAATSVGIDPEHGVILDLDY 178
Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
ED+ VD N VMT +G VE+QG+ E A FS+ +L A+ I LI +Q+ +
Sbjct: 179 NEDARAKVDMNVVMTGAGQFVEIQGTGEEAVFSRAELDELLEAAQIGIEQLIAVQRRALG 238
Query: 240 N 240
Sbjct: 239 E 239
>gi|330991184|ref|ZP_08315137.1| Ribonuclease PH [Gluconacetobacter sp. SXCC-1]
gi|329761770|gb|EGG78261.1| Ribonuclease PH [Gluconacetobacter sp. SXCC-1]
Length = 253
Score = 170 bits (430), Expect = 1e-40, Method: Composition-based stats.
Identities = 114/242 (47%), Positives = 160/242 (66%), Gaps = 2/242 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR SGR + +R + + +++AEGS L++ G T +L A++E +VP ++R GW+T
Sbjct: 12 MRPSGRATDALRPVFIQTGFARHAEGSALIRMGGTEVLCAASVETRVPSFLRGKGQGWVT 71
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPR+T +R REA GRQ GR+QEIQR+I R+LR+V DL ALG I +DCDV+
Sbjct: 72 AEYGMLPRATHSRGPREAAKGRQSGRTQEIQRLIARSLRAVTDLRALGEISITVDCDVLN 131
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTR AAITGAWVAL L+ + + LKG VAA+SCG+ ++DLDY
Sbjct: 132 ADGGTRCAAITGAWVALRLALETLVRA--GTLPAVPLKGQVAAVSCGLTQEGAVLDLDYA 189
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
EDST D+NFV+T G IVE+QG+AE+ F++ F ++ LA+ A+L ++Q +
Sbjct: 190 EDSTARADSNFVLTADGGIVEIQGTAEQDPFTEAQFNTLMRLARTGTAELFRIQTATVEE 249
Query: 241 EV 242
+
Sbjct: 250 AL 251
>gi|311031422|ref|ZP_07709512.1| ribonuclease PH [Bacillus sp. m3-13]
Length = 253
Score = 170 bits (430), Expect = 2e-40, Method: Composition-based stats.
Identities = 108/239 (45%), Positives = 159/239 (66%), Gaps = 3/239 (1%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R GR++NQ+REI + + EGS L+ G+T ++ +AT+E++VP ++R GWITA
Sbjct: 3 RTDGREQNQLREIEIITDYITHPEGSVLISVGNTKVICSATIEDRVPPFMRGGGKGWITA 62
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
EY MLPR+T R RE+ G+ GR+ EIQR+IGRALRSVV+L +G + I IDCDVIQA
Sbjct: 63 EYSMLPRATEKRTMRESTKGKVTGRTMEIQRLIGRALRSVVELDKIGEKTIWIDCDVIQA 122
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG-YPIVDLDYG 180
DGGTRTA+ITGA+VA+ Q + + K S + +AA S G++ ++DL+Y
Sbjct: 123 DGGTRTASITGAFVAMVLAFQKLVEA--KRIASLPVTDFLAATSVGVMKDGQALLDLNYI 180
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
EDST VD N +MT S +VE+QG+ E +TF++ +L++A++ I L+++QK +
Sbjct: 181 EDSTAQVDMNVIMTGSLDLVELQGTGEESTFTRKQLNELLDMAEEGILHLVEVQKKALG 239
>gi|16803278|ref|NP_464763.1| ribonuclease PH [Listeria monocytogenes EGD-e]
gi|46907457|ref|YP_013846.1| ribonuclease PH [Listeria monocytogenes serotype 4b str. F2365]
gi|47093490|ref|ZP_00231252.1| ribonuclease PH [Listeria monocytogenes str. 4b H7858]
gi|217964696|ref|YP_002350374.1| ribonuclease PH [Listeria monocytogenes HCC23]
gi|224503807|ref|ZP_03672114.1| ribonuclease PH [Listeria monocytogenes FSL R2-561]
gi|226223838|ref|YP_002757945.1| ribonuclease PH [Listeria monocytogenes Clip81459]
gi|254823508|ref|ZP_05228509.1| ribonuclease PH [Listeria monocytogenes FSL J1-194]
gi|254932884|ref|ZP_05266243.1| ribonuclease PH [Listeria monocytogenes HPB2262]
gi|284801558|ref|YP_003413423.1| ribonuclease PH [Listeria monocytogenes 08-5578]
gi|284994700|ref|YP_003416468.1| ribonuclease PH [Listeria monocytogenes 08-5923]
gi|290893280|ref|ZP_06556266.1| ribonuclease PH [Listeria monocytogenes FSL J2-071]
gi|21759401|sp|Q8Y7N6|RNPH_LISMO RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|61215964|sp|Q720J1|RNPH_LISMF RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|254808591|sp|B8DHZ4|RNPH_LISMH RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|259494123|sp|C1L2E3|RNPH_LISMC RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|16410654|emb|CAC99316.1| lmo1238 [Listeria monocytogenes EGD-e]
gi|46880725|gb|AAT04023.1| ribonuclease PH [Listeria monocytogenes serotype 4b str. F2365]
gi|47018108|gb|EAL08879.1| ribonuclease PH [Listeria monocytogenes str. 4b H7858]
gi|217333966|gb|ACK39760.1| ribonuclease PH [Listeria monocytogenes HCC23]
gi|225876300|emb|CAS05009.1| Putative ribonuclease PH [Listeria monocytogenes serotype 4b str.
CLIP 80459]
gi|284057120|gb|ADB68061.1| ribonuclease PH [Listeria monocytogenes 08-5578]
gi|284060167|gb|ADB71106.1| ribonuclease PH [Listeria monocytogenes 08-5923]
gi|290557088|gb|EFD90616.1| ribonuclease PH [Listeria monocytogenes FSL J2-071]
gi|293584438|gb|EFF96470.1| ribonuclease PH [Listeria monocytogenes HPB2262]
gi|293592728|gb|EFG00489.1| ribonuclease PH [Listeria monocytogenes FSL J1-194]
gi|307570743|emb|CAR83922.1| ribonuclease PH [Listeria monocytogenes L99]
gi|313609161|gb|EFR84844.1| ribonuclease PH [Listeria monocytogenes FSL F2-208]
gi|328475256|gb|EGF46037.1| ribonuclease PH [Listeria monocytogenes 220]
gi|332311624|gb|EGJ24719.1| Ribonuclease PH [Listeria monocytogenes str. Scott A]
Length = 248
Score = 170 bits (430), Expect = 2e-40, Method: Composition-based stats.
Identities = 109/242 (45%), Positives = 157/242 (64%), Gaps = 1/242 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR+ GR+ N +R I +T + EGS L+ G+T ++ +A++E KVP ++R GWI+
Sbjct: 1 MRVDGRESNALRNIEVTPDYLMHPEGSVLIASGNTKVICSASVETKVPPFMRGEGRGWIS 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEY MLPR+T R RE+ G+ GR+ EIQR+IGRALR+VVDL ALG R I +DCDVIQ
Sbjct: 61 AEYSMLPRATNTRNIRESSKGKVTGRTMEIQRLIGRALRAVVDLDALGERTIWLDCDVIQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+ITGA++A+ + +++ F V A + G ++DL+Y
Sbjct: 121 ADGGTRTASITGAFIAMVMAIAKLDEAVP-FAKFPVKDFLAATSVGVLEEGGTVLDLNYV 179
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
EDS VD N +MT SG VE+QG+ E ATFS+ ++ L K I++LI++QK+ + +
Sbjct: 180 EDSAAQVDMNIIMTGSGAFVELQGTGEEATFSETELAELIALGKKGISELIEIQKETLGD 239
Query: 241 EV 242
+V
Sbjct: 240 KV 241
>gi|317482025|ref|ZP_07941050.1| ribonuclease PH [Bifidobacterium sp. 12_1_47BFAA]
gi|322688513|ref|YP_004208247.1| ribonuclease PH [Bifidobacterium longum subsp. infantis 157F]
gi|322690521|ref|YP_004220091.1| ribonuclease PH [Bifidobacterium longum subsp. longum JCM 1217]
gi|316916592|gb|EFV37989.1| ribonuclease PH [Bifidobacterium sp. 12_1_47BFAA]
gi|320455377|dbj|BAJ65999.1| putative ribonuclease PH [Bifidobacterium longum subsp. longum JCM
1217]
gi|320459849|dbj|BAJ70469.1| putative ribonuclease PH [Bifidobacterium longum subsp. infantis
157F]
Length = 254
Score = 170 bits (430), Expect = 2e-40, Method: Composition-based stats.
Identities = 107/239 (44%), Positives = 157/239 (65%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+R GR+ +++R + +TR + EGS L++ G+T ++ TAT VP W +++ GW+T
Sbjct: 14 IRADGRKVDELRPVRITRHFTDAPEGSVLIECGNTRVMCTATFTPGVPRWRKDSGLGWVT 73
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEY MLPR+T R RE+V G+ GGR+ EI R+IGR LR V+D+ ALG QI +DCDV+Q
Sbjct: 74 AEYSMLPRATAERTDRESVRGKIGGRTHEISRLIGRCLRGVIDMKALGENQIQLDCDVLQ 133
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA++TGA+VAL D + E + S+VLK +V+A+S G++ G P++DL Y
Sbjct: 134 ADGGTRTASVTGAYVALVDAVNWAEKHRHIKSASRVLKDYVSAVSVGVINGTPMLDLPYI 193
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
EDS D N MT SG +E+QG+AE F++ +L+LA+ +L Q+ +S
Sbjct: 194 EDSQAMTDMNVAMTGSGTFIEIQGTAEHRPFNRAELGTLLDLAEKGNKELQAAQRAALS 252
>gi|320457392|dbj|BAJ68013.1| putative ribonuclease PH [Bifidobacterium longum subsp. infantis
ATCC 15697]
Length = 254
Score = 170 bits (430), Expect = 2e-40, Method: Composition-based stats.
Identities = 107/239 (44%), Positives = 157/239 (65%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+R GR+ +++R + +TR + EGS L++ G+T ++ TAT VP W +++ GW+T
Sbjct: 14 IRADGRKVDELRPVRITRHFTDAPEGSVLIECGNTRVMCTATFTPGVPRWRKDSGLGWVT 73
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEY MLPR+T R RE+V G+ GGR+ EI R+IGR LR V+D+ ALG QI +DCDV+Q
Sbjct: 74 AEYSMLPRATAERTDRESVRGKIGGRTHEISRLIGRCLRGVIDMKALGENQIQLDCDVLQ 133
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA++TGA+VAL D + E + S+VLK +V+A+S G++ G P++DL Y
Sbjct: 134 ADGGTRTASVTGAYVALVDAVNWAEKHRHIKSASRVLKDYVSAVSVGVINGTPMLDLPYI 193
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
EDS D N MT SG +E+QG+AE F++ +L+LA+ +L Q+ +S
Sbjct: 194 EDSQAMTDMNVAMTGSGTFIEIQGTAEHRPFNRAELGTLLDLAEKGNKELQAAQRAALS 252
>gi|37928168|pdb|1UDO|A Chain A, Crystal Structure Of The Trna Processing Enzyme Rnase Ph
R86a Mutant From Aquifex Aeolicus
Length = 255
Score = 170 bits (430), Expect = 2e-40, Method: Composition-based stats.
Identities = 114/236 (48%), Positives = 156/236 (66%), Gaps = 2/236 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR GR+E+Q+R +S+ R +Y EGSCL+ FG T ++ TA++ E VP W++ GWIT
Sbjct: 1 MRSDGRKEDQLRPVSIQRDFLEYPEGSCLISFGKTKVICTASVIENVPNWLKGKGQGWIT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEY MLPR+T R RE+V GR GG + EIQRMIGRA+R+ V+L+ +G R I +DCDVIQ
Sbjct: 61 AEYSMLPRATQQRTIRESVQGRIGGATHEIQRMIGRAMRTAVELTKIGERTIWVDCDVIQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTAAITGA+VA+ D + + +K VAA+S G++ ++DL++
Sbjct: 121 ADGGTRTAAITGAFVAVADAIIKLHKE--GIIEETPIKDFVAAVSVGIVNDRILLDLNFE 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
EDS VD N V T SG + EV E +F++D ML+LA+ I +LI+LQK
Sbjct: 179 EDSAAQVDMNVVGTGSGRLSEVHTMGEEYSFTKDELIKMLDLAQKGINELIELQKK 234
>gi|313638210|gb|EFS03458.1| ribonuclease PH [Listeria seeligeri FSL S4-171]
Length = 248
Score = 170 bits (430), Expect = 2e-40, Method: Composition-based stats.
Identities = 111/242 (45%), Positives = 156/242 (64%), Gaps = 1/242 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR+ GR+ N +R+I +T + EGS L+ G+T ++ +A++E KVP ++R GWI+
Sbjct: 1 MRVDGRESNALRKIEVTPDYLMHPEGSVLIASGNTKVICSASVETKVPPFMRGEGRGWIS 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEY MLPR+T R RE+ G+ GR+ EIQR+IGRALR+VVDL ALG R I +DCDVIQ
Sbjct: 61 AEYAMLPRATNTRNIRESSKGKVTGRTMEIQRLIGRALRAVVDLEALGERTIWLDCDVIQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+ITGA++A+ + ++ F V A + G ++DL+Y
Sbjct: 121 ADGGTRTASITGAFIAMVMAIAKLDAEVP-FTKFPVKDFLAATSVGVLEEGGTVLDLNYI 179
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
EDS VD N +MT SG VE+QG+ E ATFS+ ++ L K IA+LI++QK+ +
Sbjct: 180 EDSAAQVDMNIIMTGSGAFVELQGTGEEATFSEAELAELIALGKKGIAELIEIQKETLGE 239
Query: 241 EV 242
EV
Sbjct: 240 EV 241
>gi|269793131|ref|YP_003318035.1| ribonuclease PH [Thermanaerovibrio acidaminovorans DSM 6589]
gi|269100766|gb|ACZ19753.1| ribonuclease PH [Thermanaerovibrio acidaminovorans DSM 6589]
Length = 248
Score = 170 bits (430), Expect = 2e-40, Method: Composition-based stats.
Identities = 117/238 (49%), Positives = 159/238 (66%), Gaps = 2/238 (0%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R+ GR +R + + R ++YAEGS L+++G+TH+L TA++EEKVP ++R + GW++A
Sbjct: 3 RIDGRSSGDLRPVRIERGCNRYAEGSALIRWGNTHVLCTASVEEKVPQFLRGSGRGWVSA 62
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
EY MLPRST R +RE G+ R QEIQR+IGR+LR+ VDLS LG R I IDCDV+QA
Sbjct: 63 EYAMLPRSTHQRTQREISRGKPNARGQEIQRLIGRSLRASVDLSLLGERTIWIDCDVLQA 122
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
DGGTRTAAIT ++VAL D + + SN S + VAA+S G++ G ++DL Y E
Sbjct: 123 DGGTRTAAITASFVALVDACRWL--MSNGLVGSMPVVHQVAAVSAGIVAGEVMLDLCYEE 180
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
DS+ VD N VM + G VE+QG+ E A FS + F ML+LA I L LQ +V+
Sbjct: 181 DSSAQVDCNVVMAEDGRFVEIQGTGEDALFSMESFRDMLSLADVGIRRLHALQLEVLG 238
>gi|15606253|ref|NP_213631.1| RNase PH [Aquifex aeolicus VF5]
gi|6094114|sp|O67069|RNPH_AQUAE RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|37928163|pdb|1UDN|A Chain A, Crystal Structure Of The Trna Processing Enzyme Rnase Ph
From Aquifex Aeolicus
gi|2983451|gb|AAC07032.1| RNase PH [Aquifex aeolicus VF5]
Length = 255
Score = 170 bits (430), Expect = 2e-40, Method: Composition-based stats.
Identities = 115/236 (48%), Positives = 157/236 (66%), Gaps = 2/236 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR GR+E+Q+R +S+ R +Y EGSCL+ FG T ++ TA++ E VP W++ GWIT
Sbjct: 1 MRSDGRKEDQLRPVSIQRDFLEYPEGSCLISFGKTKVICTASVIENVPNWLKGKGQGWIT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEY MLPR+T R RE+V GR GGR+ EIQRMIGRA+R+ V+L+ +G R I +DCDVIQ
Sbjct: 61 AEYSMLPRATQQRTIRESVQGRIGGRTHEIQRMIGRAMRTAVELTKIGERTIWVDCDVIQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTAAITGA+VA+ D + + +K VAA+S G++ ++DL++
Sbjct: 121 ADGGTRTAAITGAFVAVADAIIKLHKE--GIIEETPIKDFVAAVSVGIVNDRILLDLNFE 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
EDS VD N V T SG + EV E +F++D ML+LA+ I +LI+LQK
Sbjct: 179 EDSAAQVDMNVVGTGSGRLSEVHTMGEEYSFTKDELIKMLDLAQKGINELIELQKK 234
>gi|157826032|ref|YP_001493752.1| ribonuclease PH [Rickettsia akari str. Hartford]
gi|166228310|sp|A8GPB9|RNPH_RICAH RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|157799990|gb|ABV75244.1| ribonuclease PH [Rickettsia akari str. Hartford]
Length = 239
Score = 170 bits (430), Expect = 2e-40, Method: Composition-based stats.
Identities = 126/238 (52%), Positives = 168/238 (70%), Gaps = 2/238 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR SGR+ NQ+R ISL EGSC++K G+TH++ +AT E VP ++R GW+T
Sbjct: 1 MRQSGRKSNQLRPISLELSPLINTEGSCIIKIGNTHVMCSATCETTVPPFLRGQNQGWVT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLP ST R+KREA G+QGGR+QEIQR+IGR++R V+DL LG RQIIIDCDVI
Sbjct: 61 AEYGMLPGSTSQRIKREAAQGKQGGRTQEIQRLIGRSMRCVMDLKKLGERQIIIDCDVIN 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+ITG++VALH ++ + + + +AA+SCG+ G I+DLDY
Sbjct: 121 ADGGTRTASITGSYVALHLAIRSLMKKRILKVNPLISQ--IAAVSCGIYKGEAILDLDYL 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
EDS +VD+NFV +G+++EVQG+AE+ FS++ F ML LAK A+L KLQ V+
Sbjct: 179 EDSDAEVDSNFVFAGNGNLIEVQGTAEQEPFSEEQFIEMLKLAKCGAAELFKLQNQVL 236
>gi|289434487|ref|YP_003464359.1| ribonuclease PH [Listeria seeligeri serovar 1/2b str. SLCC3954]
gi|289170731|emb|CBH27271.1| ribonuclease PH [Listeria seeligeri serovar 1/2b str. SLCC3954]
Length = 248
Score = 170 bits (429), Expect = 2e-40, Method: Composition-based stats.
Identities = 111/242 (45%), Positives = 156/242 (64%), Gaps = 1/242 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR+ GR+ N +R+I +T + EGS L+ G+T ++ +A++E KVP ++R GWI+
Sbjct: 1 MRVDGRESNALRKIEVTPDYLMHPEGSVLIASGNTKVICSASVENKVPPFMRGEGRGWIS 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEY MLPR+T R RE+ G+ GR+ EIQR+IGRALR+VVDL ALG R I +DCDVIQ
Sbjct: 61 AEYAMLPRATNTRNIRESSKGKVTGRTMEIQRLIGRALRAVVDLEALGERTIWLDCDVIQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+ITGA++A+ + ++ F V A + G ++DL+Y
Sbjct: 121 ADGGTRTASITGAFIAMVMAIAKLDAEVP-FTKFPVKDLLAATSVGVLEEGGTVLDLNYI 179
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
EDS VD N +MT SG VE+QG+ E ATFS+ ++ L K IA+LI++QK+ +
Sbjct: 180 EDSAAQVDMNIIMTGSGAFVELQGTGEEATFSEAELAELIALGKKGIAELIEIQKETLGE 239
Query: 241 EV 242
EV
Sbjct: 240 EV 241
>gi|90023323|ref|YP_529150.1| ribonuclease PH [Saccharophagus degradans 2-40]
gi|123395477|sp|Q21EE1|RNPH_SACD2 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|89952923|gb|ABD82938.1| RNAse PH [Saccharophagus degradans 2-40]
Length = 239
Score = 170 bits (429), Expect = 2e-40, Method: Composition-based stats.
Identities = 123/239 (51%), Positives = 173/239 (72%), Gaps = 2/239 (0%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R SGR Q+R++++TR+ +++AEGS LV FGDT ++ TA++E VP +++ GWITA
Sbjct: 3 RPSGRAPEQLRDVTITRQFTRHAEGSVLVCFGDTKVICTASVEAGVPRFLKGQGQGWITA 62
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
EYGMLPRSTG+R+ REA G+QGGR+ EIQR+IGR+LR+ VDL+ALG I+IDCDVIQA
Sbjct: 63 EYGMLPRSTGSRMGREAARGKQGGRTVEIQRLIGRSLRAAVDLTALGEHSIVIDCDVIQA 122
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
DGGTRTA+ITGA VAL D +++++ V VAA+S G+ G P++DLDY E
Sbjct: 123 DGGTRTASITGALVALVDAIRYLQREKMITTDPLV--HMVAAVSVGIYEGVPVLDLDYPE 180
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
DS + D N VMT+ G ++E+QG+AE+ F+ + F M +LAK +A+L+ LQK ++
Sbjct: 181 DSNAETDMNMVMTEEGGLIEIQGTAEKKPFTDEQFAGMFSLAKKGVAELVALQKAALAQ 239
>gi|296393943|ref|YP_003658827.1| ribonuclease PH [Segniliparus rotundus DSM 44985]
gi|296181090|gb|ADG97996.1| ribonuclease PH [Segniliparus rotundus DSM 44985]
Length = 261
Score = 170 bits (429), Expect = 2e-40, Method: Composition-based stats.
Identities = 110/238 (46%), Positives = 155/238 (65%), Gaps = 1/238 (0%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
RL GR +++MR + +TR + GS LV+FG T + A++ E VP W + T GW+TA
Sbjct: 4 RLDGRHDDEMRPVKITRGFTSNPPGSVLVEFGQTRVFCAASVTEGVPRWRKGTGEGWLTA 63
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
EY MLP +T R RE+V G+ GGR+QEI R+IGR+LR+ +DL+ALG I +DCDV+QA
Sbjct: 64 EYAMLPAATATRNDRESVKGKLGGRTQEISRLIGRSLRACIDLAALGENTISVDCDVLQA 123
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
DGGTRTAAITGA+VAL D + + Q + +AA+S G++ G +DL Y E
Sbjct: 124 DGGTRTAAITGAFVALSDAVTWLAASGRLAD-PQPISCGIAAVSVGVVDGRVRLDLPYEE 182
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
D+ +VD N V TD+G +VEVQG+AE ATF + +L+LA I L+ Q++ ++
Sbjct: 183 DARAEVDMNVVATDTGALVEVQGTAEGATFHRKTLDKLLDLAFSGIERLVAAQQEALA 240
>gi|33592677|ref|NP_880321.1| ribonuclease PH [Bordetella pertussis Tohama I]
gi|33601937|ref|NP_889497.1| ribonuclease PH [Bordetella bronchiseptica RB50]
gi|61216026|sp|Q7VXY3|RNPH_BORPE RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|61216032|sp|Q7WI90|RNPH_BORBR RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|33572323|emb|CAE41877.1| ribonuclease PH [Bordetella pertussis Tohama I]
gi|33576375|emb|CAE33453.1| ribonuclease PH [Bordetella bronchiseptica RB50]
gi|332382092|gb|AEE66939.1| ribonuclease PH [Bordetella pertussis CS]
Length = 246
Score = 170 bits (429), Expect = 2e-40, Method: Composition-based stats.
Identities = 118/237 (49%), Positives = 159/237 (67%), Gaps = 2/237 (0%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R SGR + +R SL R ++YAEGS LV+ G+TH+L TA++ EKVP +++ GW+TA
Sbjct: 11 RPSGRAVDALRPFSLERGFTRYAEGSVLVRAGNTHVLCTASVLEKVPPFLKGRGEGWVTA 70
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
EYGMLPR+T R REA G+Q GR+QEIQR+IGR+LR+V DL LG R + +DCDV+QA
Sbjct: 71 EYGMLPRATHTRGDREAARGKQSGRTQEIQRLIGRSLRAVFDLRLLGERTLHLDCDVLQA 130
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
DGGTR A+ITGAWVA D + + ++ VAA+S G++ G ++DLDY E
Sbjct: 131 DGGTRCASITGAWVAAADAVALL--MQRGDLAHNPIRDAVAAVSVGLVDGRAVLDLDYQE 188
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
DS D N VMT SG VEVQG+ E ATF++ ML LA+ IA L++ Q++ +
Sbjct: 189 DSACAADVNVVMTGSGAFVEVQGTGEGATFTRGELDTMLGLAEGGIAQLVRAQREAL 245
>gi|262277754|ref|ZP_06055547.1| polyribonucleotide nucleotidyltransferase [alpha proteobacterium
HIMB114]
gi|262224857|gb|EEY75316.1| polyribonucleotide nucleotidyltransferase [alpha proteobacterium
HIMB114]
Length = 692
Score = 170 bits (429), Expect = 2e-40, Method: Composition-based stats.
Identities = 45/243 (18%), Positives = 88/243 (36%), Gaps = 18/243 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR+ +++R+I + A GS L G+T + ATL +E+ + +
Sbjct: 313 RIDGRKLDEVRDILCEVGIIPRAHGSSLFTRGETQAIVAATLGTSDDEQRFESLEGMQKS 372
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + R+ G + RA+ + + I I D
Sbjct: 373 RFMLHYNFPPFSVGEVGRVGGTGRREIGHGKL----AWRAINAALPKHEDFPYTIRIVSD 428
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A + G+ +AL +E + + +G+ ++ +
Sbjct: 429 ITESNGSSSMATVCGSSMALMHAGVPIEKPIAGIAMGLIKEGNEFSVLSD---------I 479
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D + G I +Q + + + L AK D++
Sbjct: 480 LGDEDHLGDMDFKVAGSADG-ITSLQMDIKINGITFEIMEKALEQAKKGRLDILNEMAKA 538
Query: 238 ISN 240
I
Sbjct: 539 IKE 541
Score = 104 bits (259), Expect = 1e-20, Method: Composition-based stats.
Identities = 33/233 (14%), Positives = 81/233 (34%), Gaps = 27/233 (11%)
Query: 13 EISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEK----VPMWIRNTKHGWITAEYGMLP 67
+S+ +++ A+G+ ++++GDT +++TA +K + + G +P
Sbjct: 15 NLSIETGKIARQADGAVILRWGDTVIISTAVASKKTNPDTDFFPLTVNYQEKFYAAGKIP 74
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R R I R+I R +R + Q++ +
Sbjct: 75 GGYFKR------EARPTESETLISRLIDRPIRPLFPDQFRNETQVLTTVLSYDKECDPDI 128
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
A+ + A +G VAA G++ G I++ + ++
Sbjct: 129 LAVIASSAA-------------LSISGLPFQGPVAASKVGLIDGKFILNPSKESIKSSNL 175
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
+ T ++ V+ +E + ++ + + +I L +++
Sbjct: 176 ELVVAGTKE-AVLMVE--SEASGLTEAQMLDAVKFGHENFLPVINLIEELAKE 225
>gi|86607255|ref|YP_476018.1| ribonuclease PH [Synechococcus sp. JA-3-3Ab]
gi|123504955|sp|Q2JRJ9|RNPH_SYNJA RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|86555797|gb|ABD00755.1| ribonuclease PH [Synechococcus sp. JA-3-3Ab]
Length = 242
Score = 170 bits (429), Expect = 2e-40, Method: Composition-based stats.
Identities = 109/239 (45%), Positives = 155/239 (64%), Gaps = 3/239 (1%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R GR Q+R IS R ++YA GS LVKFGDTH+L TA++ E+VP +++NT GW+TA
Sbjct: 5 RPDGRTAAQLRPISFQRHFTRYAPGSVLVKFGDTHVLCTASVAEEVPPFLQNTGQGWLTA 64
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
EY MLP +T R R + + GR+ EIQR+IGR+LR+ +D LGSR I +D DV+QA
Sbjct: 65 EYRMLPTATQQRQPR--ETLKVSGRTAEIQRLIGRSLRAALDFHKLGSRTITVDADVLQA 122
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLS-QVLKGHVAAISCGMLCGYPIVDLDYG 180
DG TRTAAITG +VALHD + + L+ VAA+S G++ G +VDL Y
Sbjct: 123 DGSTRTAAITGGYVALHDAITWLYKQGLLDPAQGSPLRQQVAALSVGIVRGEVLVDLCYE 182
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
EDS +VD N VM + G ++E+QG+AE F + ML++A+ I +L++ Q++ ++
Sbjct: 183 EDSQAEVDMNIVMNEQGALIEIQGTAEAGCFDRSQLLQMLDMAQAGIQELLRAQRETLN 241
>gi|23464887|ref|NP_695490.1| ribonuclease PH [Bifidobacterium longum NCC2705]
gi|227545828|ref|ZP_03975877.1| ribonuclease PH [Bifidobacterium longum subsp. infantis ATCC 55813]
gi|296453555|ref|YP_003660698.1| ribonuclease PH [Bifidobacterium longum subsp. longum JDM301]
gi|312133310|ref|YP_004000649.1| rph [Bifidobacterium longum subsp. longum BBMN68]
gi|23325477|gb|AAN24126.1| probable ribonuclease PH [Bifidobacterium longum NCC2705]
gi|227213944|gb|EEI81783.1| ribonuclease PH [Bifidobacterium longum subsp. infantis ATCC 55813]
gi|291517381|emb|CBK70997.1| RNAse PH [Bifidobacterium longum subsp. longum F8]
gi|296182986|gb|ADG99867.1| ribonuclease PH [Bifidobacterium longum subsp. longum JDM301]
gi|311772524|gb|ADQ02012.1| Rph [Bifidobacterium longum subsp. longum BBMN68]
Length = 258
Score = 170 bits (429), Expect = 2e-40, Method: Composition-based stats.
Identities = 107/239 (44%), Positives = 157/239 (65%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+R GR+ +++R + +TR + EGS L++ G+T ++ TAT VP W +++ GW+T
Sbjct: 18 IRADGRKVDELRPVRITRHFTDAPEGSVLIECGNTRVMCTATFTPGVPRWRKDSGLGWVT 77
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEY MLPR+T R RE+V G+ GGR+ EI R+IGR LR V+D+ ALG QI +DCDV+Q
Sbjct: 78 AEYSMLPRATAERTDRESVRGKIGGRTHEISRLIGRCLRGVIDMKALGENQIQLDCDVLQ 137
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA++TGA+VAL D + E + S+VLK +V+A+S G++ G P++DL Y
Sbjct: 138 ADGGTRTASVTGAYVALVDAVNWAEKHRHIKSASRVLKDYVSAVSVGVINGTPMLDLPYI 197
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
EDS D N MT SG +E+QG+AE F++ +L+LA+ +L Q+ +S
Sbjct: 198 EDSQAMTDMNVAMTGSGTFIEIQGTAEHRPFNRAELGTLLDLAEKGNKELQAAQRAALS 256
>gi|255066782|ref|ZP_05318637.1| tRNA nucleotidyltransferase [Neisseria sicca ATCC 29256]
gi|255048857|gb|EET44321.1| tRNA nucleotidyltransferase [Neisseria sicca ATCC 29256]
Length = 241
Score = 170 bits (429), Expect = 2e-40, Method: Composition-based stats.
Identities = 116/235 (49%), Positives = 166/235 (70%), Gaps = 2/235 (0%)
Query: 6 RQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGM 65
R + +R+I +T +A+GSCL++ G+T ++ TA+++E VP ++R GW+TAEYGM
Sbjct: 9 RAADSLRDIKITPHFLPHADGSCLIECGNTKVICTASIDENVPPFLRGKGQGWVTAEYGM 68
Query: 66 LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125
LP ST +R++REA +G+Q GR+QEIQR+IGR+LR++VD+ LG RQI+IDCDVIQADGGT
Sbjct: 69 LPASTASRMRREAAAGKQSGRTQEIQRLIGRSLRAIVDMEKLGERQILIDCDVIQADGGT 128
Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185
RTA+ITGA+VAL + + ++ VAA+S G++ G P++DLDY EDS
Sbjct: 129 RTASITGAFVALQIAVNKLLSDD--LISENPIREAVAAVSAGVVNGVPLLDLDYPEDSGC 186
Query: 186 DVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
D D N VMT SG I+E+QG+AE A FS D F ++ LA+ IA+L Q+ +S+
Sbjct: 187 DSDVNIVMTASGKIIEIQGTAEGAPFSLDEFGKLIALAQKGIAELTAHQQAALSS 241
>gi|213691324|ref|YP_002321910.1| ribonuclease PH [Bifidobacterium longum subsp. infantis ATCC 15697]
gi|213522785|gb|ACJ51532.1| ribonuclease PH [Bifidobacterium longum subsp. infantis ATCC 15697]
Length = 258
Score = 170 bits (429), Expect = 2e-40, Method: Composition-based stats.
Identities = 107/239 (44%), Positives = 157/239 (65%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+R GR+ +++R + +TR + EGS L++ G+T ++ TAT VP W +++ GW+T
Sbjct: 18 IRADGRKVDELRPVRITRHFTDAPEGSVLIECGNTRVMCTATFTPGVPRWRKDSGLGWVT 77
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEY MLPR+T R RE+V G+ GGR+ EI R+IGR LR V+D+ ALG QI +DCDV+Q
Sbjct: 78 AEYSMLPRATAERTDRESVRGKIGGRTHEISRLIGRCLRGVIDMKALGENQIQLDCDVLQ 137
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA++TGA+VAL D + E + S+VLK +V+A+S G++ G P++DL Y
Sbjct: 138 ADGGTRTASVTGAYVALVDAVNWAEKHRHIKSASRVLKDYVSAVSVGVINGTPMLDLPYI 197
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
EDS D N MT SG +E+QG+AE F++ +L+LA+ +L Q+ +S
Sbjct: 198 EDSQAMTDMNVAMTGSGTFIEIQGTAEHRPFNRAELGTLLDLAEKGNKELQAAQRAALS 256
>gi|310778905|ref|YP_003967238.1| ribonuclease PH [Ilyobacter polytropus DSM 2926]
gi|309748228|gb|ADO82890.1| ribonuclease PH [Ilyobacter polytropus DSM 2926]
Length = 245
Score = 170 bits (429), Expect = 2e-40, Method: Composition-based stats.
Identities = 106/240 (44%), Positives = 161/240 (67%), Gaps = 2/240 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+R R+ +Q+R+I + + YAEGS L++ G+T ++ TA++ ++VP ++RN GW+T
Sbjct: 5 LRDDNRKLDQIRDIKIKPNFTIYAEGSVLIEMGNTKVICTASISDRVPPFLRNQGRGWLT 64
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEY MLPR+T +R REAV G+ GR+ EIQR+IGR+LR+ +DL +G + I +DCDVIQ
Sbjct: 65 AEYSMLPRATEDRNMREAVKGKLSGRTMEIQRLIGRSLRACIDLEKIGEKTITVDCDVIQ 124
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+ITG ++AL ++ + + + VAAIS G++ G P++DL Y
Sbjct: 125 ADGGTRTASITGGYMALALAVKKLLKKDKLKENPLIAN--VAAISAGIVGGQPMLDLKYT 182
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
EDST +VD N +M G VEVQG+ E AT+++ ML+LA+ I +L++LQ ++
Sbjct: 183 EDSTAEVDMNVIMNSKGEFVEVQGTGEEATYTRRELNEMLDLAEKGIMELVELQNKIVEE 242
>gi|303231308|ref|ZP_07318044.1| tRNA nucleotidyltransferase [Veillonella atypica ACS-049-V-Sch6]
gi|302514038|gb|EFL56044.1| tRNA nucleotidyltransferase [Veillonella atypica ACS-049-V-Sch6]
Length = 257
Score = 170 bits (429), Expect = 2e-40, Method: Composition-based stats.
Identities = 120/240 (50%), Positives = 161/240 (67%), Gaps = 4/240 (1%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR R Q+R I +TR ++YAEGS L++ G T ++ TAT+EE VP W++ + GW+T
Sbjct: 1 MRSDNRTAGQLRPIKITRHFTEYAEGSVLIECGKTKVICTATIEENVPRWLKGSGQGWVT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEY +LPRST RV REA G+Q GR+ EIQR+IGRALR+VVDL ALG R I +DCDVIQ
Sbjct: 61 AEYSLLPRSTKTRVSREAARGKQTGRTVEIQRLIGRALRAVVDLKALGERSITVDCDVIQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+ITGA+VAL D + D + + AAIS G+ PI DL Y
Sbjct: 121 ADGGTRTASITGAFVALVDAI----DFTFGGFGKFPITDFCAAISVGIGPEGPITDLCYE 176
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
EDS VD N V T +G+++EVQG+ E TFS+D +L+LA+ +L+ +Q++V+ +
Sbjct: 177 EDSAAVVDMNVVRTGAGNLIEVQGTGEHGTFSRDELNQLLDLAESATDELMAVQRNVLGS 236
>gi|120612226|ref|YP_971904.1| ribonuclease PH [Acidovorax citrulli AAC00-1]
gi|120590690|gb|ABM34130.1| RNAse PH [Acidovorax citrulli AAC00-1]
Length = 253
Score = 170 bits (429), Expect = 2e-40, Method: Composition-based stats.
Identities = 118/238 (49%), Positives = 159/238 (66%), Gaps = 2/238 (0%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R +GR + +R + +TR + +AEGS LV+FG T +L TA++EE+VP R + GW+TA
Sbjct: 12 RSAGRGVDALRPVRITRHYTMHAEGSVLVEFGHTKVLCTASVEERVPPHKRGSGEGWVTA 71
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
EYGMLPR+T R REA G+Q GR+QEIQR+IGR+LR+V DL ALG R I +DCDV+QA
Sbjct: 72 EYGMLPRATHTRSDREAARGKQSGRTQEIQRLIGRSLRAVFDLRALGERTIQLDCDVLQA 131
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
DGGTRTAAITGAWVA HD + + + + +AA+S G++ G P++DL+Y E
Sbjct: 132 DGGTRTAAITGAWVAAHDAVSALLEGGKIAAS--PITAPLAAVSVGIVQGTPLLDLEYTE 189
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
D D D N VM D G VEVQG+AE F++ +L+LA + LI LQ+ +S
Sbjct: 190 DVQCDTDMNVVMMDGGRFVEVQGTAEGIAFTRSEMDRLLDLAARGVDALIALQRQALS 247
>gi|56381043|dbj|BAD76951.1| ribonuclease PH [Geobacillus kaustophilus HTA426]
Length = 257
Score = 170 bits (429), Expect = 2e-40, Method: Composition-based stats.
Identities = 117/241 (48%), Positives = 153/241 (63%), Gaps = 3/241 (1%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR GR ++R + + K+AEGS L++ GDT ++ TAT+EEKVP ++R GWIT
Sbjct: 2 MRADGRSSCELRPVHIHPHYMKHAEGSVLIEVGDTKVICTATVEEKVPSFMRGGGKGWIT 61
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPR+T R REA G+ GR+ EIQR+IGRALRSVVDL LG R I IDCDVIQ
Sbjct: 62 AEYGMLPRATEQRNVREASKGKVSGRTMEIQRLIGRALRSVVDLEQLGERTIWIDCDVIQ 121
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY-PIVDLDY 179
ADGGTRTA+ITGA+VAL L + + ++ +AA S G+ + I+DLDY
Sbjct: 122 ADGGTRTASITGAYVALVLALAKLVEEGRLEA--LPIRDFLAATSVGIDPEHGVILDLDY 179
Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
ED+ VD N VMT +G VE+QG+ E A FS+ +L A+ I LI +Q+ +
Sbjct: 180 NEDARAKVDMNVVMTGAGQFVEIQGTGEEAVFSRAELDELLEAAQIGIEQLIAVQRRALG 239
Query: 240 N 240
Sbjct: 240 E 240
>gi|312113394|ref|YP_004010990.1| ribonuclease PH [Rhodomicrobium vannielii ATCC 17100]
gi|311218523|gb|ADP69891.1| ribonuclease PH [Rhodomicrobium vannielii ATCC 17100]
Length = 237
Score = 169 bits (428), Expect = 2e-40, Method: Composition-based stats.
Identities = 136/235 (57%), Positives = 173/235 (73%), Gaps = 2/235 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR S RQ +R +S R S +AEGSCL+KFG+TH+L TA+LE++VP W++ GWIT
Sbjct: 1 MRPSKRQAGDLRPVSFQRAFSHHAEGSCLIKFGNTHVLCTASLEDRVPPWLKGQGRGWIT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPR+T +R +REA +G Q GRSQEIQR+IGR+LR+VVDL ALG RQI++DCDV+Q
Sbjct: 61 AEYGMLPRATSDRTRREATTGHQSGRSQEIQRLIGRSLRAVVDLQALGERQIMVDCDVLQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+ITGAWVALHDC Q M + +K +VAAISCG+ G ++DLDY
Sbjct: 121 ADGGTRTASITGAWVALHDCFQWMRARDM--LRGEPMKDNVAAISCGIYKGEAVLDLDYP 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
EDS + DANFV T G IVE+Q +AE+ FS++ + LAK IA+L+ LQK
Sbjct: 179 EDSDAEADANFVFTGKGQIVEIQATAEKGAFSEERMAELTALAKKGIAELVNLQK 233
>gi|312139208|ref|YP_004006544.1| ribonuclease ph rpha [Rhodococcus equi 103S]
gi|325673486|ref|ZP_08153177.1| tRNA nucleotidyltransferase [Rhodococcus equi ATCC 33707]
gi|311888547|emb|CBH47859.1| ribonuclease PH RphA [Rhodococcus equi 103S]
gi|325555507|gb|EGD25178.1| tRNA nucleotidyltransferase [Rhodococcus equi ATCC 33707]
Length = 260
Score = 169 bits (428), Expect = 3e-40, Method: Composition-based stats.
Identities = 106/239 (44%), Positives = 157/239 (65%), Gaps = 1/239 (0%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R GR ++++RE+ +TR + + GS LV+FG+T ++ TA++EE VP W + + GW+TA
Sbjct: 4 REDGRTDDELREVRITRGFTNHPAGSVLVEFGNTRVMCTASVEEGVPRWRKGSGLGWLTA 63
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
EY MLP +T R RE+V G+ GGR+QEI R++GR+LR+ +DL+A+G I IDCDV+QA
Sbjct: 64 EYAMLPAATHTRSGRESVKGKVGGRTQEISRLVGRSLRACIDLAAIGENTIAIDCDVLQA 123
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
DGGTRTAAITGA+VAL D + ++ Q + +AA+S G++ G +DL Y E
Sbjct: 124 DGGTRTAAITGAYVALVDAVTYLRAAGRLAD-PQPISCAIAAVSVGVVDGRVRLDLPYEE 182
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
DS +VD N V TD+G +VE+QG+ E ATF + +L+ A L +Q+ ++
Sbjct: 183 DSRAEVDMNVVATDTGTLVEIQGTGEGATFPRSTLDKLLDSALAGCEQLFAIQQAALAE 241
>gi|300113393|ref|YP_003759968.1| ribonuclease PH [Nitrosococcus watsonii C-113]
gi|299539330|gb|ADJ27647.1| ribonuclease PH [Nitrosococcus watsonii C-113]
Length = 239
Score = 169 bits (428), Expect = 3e-40, Method: Composition-based stats.
Identities = 122/240 (50%), Positives = 169/240 (70%), Gaps = 2/240 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR SGR +++R I TR ++YAEGS LV+FG+T ++ A++E+++P +++ T GWIT
Sbjct: 1 MRPSGRAPHELRPIHFTRHYTQYAEGSVLVEFGNTRVICNASVEDRIPRFLKGTGRGWIT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPRST NR+ REA GRQGGR+ EIQR+IGRALR+VVDL+ALG + +DCDVIQ
Sbjct: 61 AEYGMLPRSTHNRMGREAAQGRQGGRTLEIQRLIGRALRAVVDLAALGEVTVTLDCDVIQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTAAITG++VAL D + + + G +A++S G+ G P++DLDY
Sbjct: 121 ADGGTRTAAITGSYVALVDAI--HNRLKKRAIAHSPIHGQIASVSVGIYEGTPVLDLDYR 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
EDST + D N VM ++G +E+QG+AE F + AML LAK+ I L+ Q +V++
Sbjct: 179 EDSTAETDMNVVMNEAGAFIEIQGTAEGHAFRMNELQAMLELAKNGITTLLAQQTEVLAR 238
>gi|310643658|ref|YP_003948416.1| ribonuclease ph:ham1-like protein [Paenibacillus polymyxa SC2]
gi|309248608|gb|ADO58175.1| Ribonuclease PH:Ham1-like protein [Paenibacillus polymyxa SC2]
Length = 253
Score = 169 bits (428), Expect = 3e-40, Method: Composition-based stats.
Identities = 108/238 (45%), Positives = 158/238 (66%), Gaps = 2/238 (0%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R +GR +++R + LT V+KYAEGS ++ G+T ++ TAT+EE+VP +++ GW+TA
Sbjct: 3 RSNGRNGDELRPMKLTAGVNKYAEGSVFIEVGETKVICTATVEERVPPFMKGQGKGWVTA 62
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
EY MLPR+T +R +REA G+ GR+ EIQR+IGRALRSVV+L ALG R I +DCDVIQA
Sbjct: 63 EYSMLPRATHSRNQREAARGKLTGRTMEIQRLIGRALRSVVNLQALGERTITLDCDVIQA 122
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
DGGTRT +ITG++VAL + + + +A++S G++ ++DL+Y E
Sbjct: 123 DGGTRTTSITGSFVALAIAVNKIAIQHKLPV--FPITDFLASVSVGVVGDKALLDLNYEE 180
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
DS VD N VMT SG VE+QG+ E + F + +L+L + I +I+ QK+V+
Sbjct: 181 DSKAKVDMNLVMTGSGKYVELQGTGEESPFDRQELDQLLSLGEQGILQMIERQKEVLG 238
>gi|119947081|ref|YP_944761.1| ribonuclease PH [Psychromonas ingrahamii 37]
gi|166228305|sp|A1T097|RNPH_PSYIN RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|119865685|gb|ABM05162.1| RNAse PH [Psychromonas ingrahamii 37]
Length = 239
Score = 169 bits (428), Expect = 3e-40, Method: Composition-based stats.
Identities = 118/241 (48%), Positives = 156/241 (64%), Gaps = 2/241 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR S R Q REI +TR + YAEGS L++ G+T +L A++ VP +++ GW+T
Sbjct: 1 MRPSNRTPEQNREIKITRHYTDYAEGSVLIEMGNTKVLCNASVSGSVPRFLKGKGKGWVT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEY MLPR+T R REA G+QGGR+ EIQR+I R+LR+ VDL+ALG I +DCDVIQ
Sbjct: 61 AEYAMLPRATHIRNMREAAKGKQGGRTLEIQRLIARSLRAAVDLNALGENMITVDCDVIQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTAAITG +AL D L M + LK +AA+S G+ G P+ DLDY
Sbjct: 121 ADGGTRTAAITGGCIALADALNWMVKKGKLKKS--PLKQMIAAVSVGIYQGTPVCDLDYA 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
EDS + D N VMT+SG ++E+Q +AE FS + +ML+LAK I L+ QK ++
Sbjct: 179 EDSNAETDTNVVMTESGGLIEIQATAEDGAFSHEQLLSMLSLAKGGIEALVVEQKKALNA 238
Query: 241 E 241
E
Sbjct: 239 E 239
>gi|308070476|ref|YP_003872081.1| tRNA nucleotidyltransferase [Paenibacillus polymyxa E681]
gi|305859755|gb|ADM71543.1| Ribonuclease PH (RNase PH) (tRNA nucleotidyltransferase)
[Paenibacillus polymyxa E681]
Length = 253
Score = 169 bits (428), Expect = 3e-40, Method: Composition-based stats.
Identities = 108/238 (45%), Positives = 159/238 (66%), Gaps = 2/238 (0%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R +GR +++R + LT V+KYAEGS ++ G+T ++ TAT+EE+VP +++ GW+TA
Sbjct: 3 RSNGRNGDELRPMKLTAGVNKYAEGSVFIEVGETKVICTATVEERVPPFMKGQGKGWVTA 62
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
EY MLPR+T +R +REA G+ GR+ EIQR+IGRALRSVV+L ALG R I +DCDVIQA
Sbjct: 63 EYSMLPRATHSRNQREAARGKLTGRTMEIQRLIGRALRSVVNLQALGERTITLDCDVIQA 122
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
DGGTRT +ITG++VAL + + + +A++S G++ ++DL+Y E
Sbjct: 123 DGGTRTTSITGSFVALAIAVNKIATQHKLPV--FPITDFLASVSVGVVGEKALLDLNYEE 180
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
DS VD N VMT SG VE+QG+ E + F ++ +L+L + I +I+ QK+V+
Sbjct: 181 DSKAKVDMNLVMTGSGKYVELQGTGEESPFDRNELDQLLSLGEQGILQMIERQKEVLG 238
>gi|56550910|ref|YP_161749.1| ribonuclease PH [Zymomonas mobilis subsp. mobilis ZM4]
gi|260753398|ref|YP_003226291.1| ribonuclease PH [Zymomonas mobilis subsp. mobilis NCIMB 11163]
gi|61215796|sp|Q5NRL6|RNPH_ZYMMO RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|56542484|gb|AAV88638.1| ribonuclease PH [Zymomonas mobilis subsp. mobilis ZM4]
gi|258552761|gb|ACV75707.1| ribonuclease PH [Zymomonas mobilis subsp. mobilis NCIMB 11163]
Length = 237
Score = 169 bits (428), Expect = 3e-40, Method: Composition-based stats.
Identities = 119/239 (49%), Positives = 163/239 (68%), Gaps = 2/239 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR SGR +Q+R +S+ +++AEGSCL+ FGDT +L TA+LEE++P W+R GW+T
Sbjct: 1 MRPSGRTPDQLRSLSIETGFTRHAEGSCLISFGDTRVLVTASLEERLPSWLRGKGQGWVT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPRST +R REA G+Q GR+QEIQR+IGR+LR+ +DL LG RQI IDCDV+Q
Sbjct: 61 AEYGMLPRSTHSRTNREAARGKQSGRTQEIQRLIGRSLRAGIDLKKLGERQITIDCDVLQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+I+G WVAL + + + + + VAA+SCG+ G P++DLDY
Sbjct: 121 ADGGTRTASISGGWVALRLAVNKLLASGQLTEDPIISQ--VAAVSCGISQGVPVLDLDYA 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
EDST + DANFVM ++EVQ SAE A + ++ +L LA+ + QK ++
Sbjct: 179 EDSTAEADANFVMMGDSRLIEVQASAEGAPYDEEGLLRLLRLARMGCQQIFAEQKKAVA 237
>gi|23335847|ref|ZP_00121079.1| COG0689: RNase PH [Bifidobacterium longum DJO10A]
gi|189439894|ref|YP_001954975.1| ribonuclease PH [Bifidobacterium longum DJO10A]
gi|189428329|gb|ACD98477.1| RNase PH [Bifidobacterium longum DJO10A]
Length = 258
Score = 169 bits (428), Expect = 3e-40, Method: Composition-based stats.
Identities = 107/239 (44%), Positives = 157/239 (65%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+R GR+ +++R + +TR + EGS L++ G+T ++ TAT VP W +++ GW+T
Sbjct: 18 IRADGRKVDELRPVRITRHFTDAPEGSVLIECGNTRVMCTATFTPGVPRWRKDSGLGWVT 77
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEY MLPR+T R RE+V G+ GGR+ EI R+IGR LR V+D+ ALG QI +DCDV+Q
Sbjct: 78 AEYSMLPRATAERTDRESVRGKIGGRTHEISRLIGRCLRGVIDMKALGENQIQLDCDVLQ 137
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA++TGA+VAL D + E + S+VLK +V+A+S G++ G P++DL Y
Sbjct: 138 ADGGTRTASVTGAYVALVDAVNWAEKHRHIKSASRVLKDYVSAVSVGVINGTPMLDLPYI 197
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
EDS D N MT SG +E+QG+AE F++ +L+LA+ +L Q+ +S
Sbjct: 198 EDSQAMTDMNVAMTGSGTFIEIQGTAEHRPFNRAELGTLLDLAEKGNKELQAAQRAALS 256
>gi|82701201|ref|YP_410767.1| ribonuclease PH [Nitrosospira multiformis ATCC 25196]
gi|123545290|sp|Q2YCZ6|RNPH_NITMU RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|82409266|gb|ABB73375.1| RNAse PH [Nitrosospira multiformis ATCC 25196]
Length = 238
Score = 169 bits (428), Expect = 3e-40, Method: Composition-based stats.
Identities = 124/240 (51%), Positives = 172/240 (71%), Gaps = 2/240 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR S R+ +Q+R + +TR +++AEGS L++ GDT ++ TA+++EKVP+++R GW+T
Sbjct: 1 MRPSKRRPDQLRSVQITRHYTRHAEGSVLIECGDTRIICTASVDEKVPLFLRGKGQGWLT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPRST R++REA G+Q GR+ EIQR+IGRALRSV+DL+ LG R I +DCDVIQ
Sbjct: 61 AEYGMLPRSTNERMQREAAKGKQSGRTMEIQRLIGRALRSVMDLTKLGERTIQVDCDVIQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+ITGA+VA+HD + + + GHVAA+S G+ G P++DLDY
Sbjct: 121 ADGGTRTASITGAFVAVHDAIGTLLRKQAIEAT--PITGHVAAVSVGVYEGVPMLDLDYL 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
EDS D D N VMTD +VE+QG+AE FS++ ML+LA+ I +LI QK+ ++
Sbjct: 179 EDSRCDTDMNIVMTDDLGLVEMQGTAEGMPFSRNDLDMMLDLAQQGIRELIAAQKNALNR 238
>gi|331695372|ref|YP_004331611.1| Ribonuclease PH [Pseudonocardia dioxanivorans CB1190]
gi|326950061|gb|AEA23758.1| Ribonuclease PH [Pseudonocardia dioxanivorans CB1190]
Length = 251
Score = 169 bits (428), Expect = 3e-40, Method: Composition-based stats.
Identities = 115/238 (48%), Positives = 156/238 (65%), Gaps = 1/238 (0%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R GR ++++R + +TR K+ GS LV+FGDT +L A++ + VP W + + GW+TA
Sbjct: 3 RADGRADDELRPVRITRGFQKHPAGSVLVEFGDTKVLCAASVTDGVPRWRKGSGLGWLTA 62
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
EY MLP +T R RE+V GR GGR+ EI R+IGR+LR+ +DL ALG I +DCDVIQA
Sbjct: 63 EYAMLPSATNTRSDRESVRGRIGGRTHEISRLIGRSLRACIDLKALGENTIALDCDVIQA 122
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
DGGTRTAAITGA+VAL D N+ + + VAA+S G++ G +DL Y E
Sbjct: 123 DGGTRTAAITGAYVALADA-VTWLAAHNRLADPKPISCQVAAVSVGVVDGRVRLDLPYEE 181
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
DS +VD N V TD+G ++EVQG+AE ATFS+ AML+ A IA L LQ + ++
Sbjct: 182 DSRAEVDTNVVATDTGTLIEVQGTAEGATFSRRTLDAMLDSALAGIATLATLQAEALA 239
>gi|307546985|ref|YP_003899464.1| ribonuclease PH [Halomonas elongata DSM 2581]
gi|307219009|emb|CBV44279.1| ribonuclease PH [Halomonas elongata DSM 2581]
Length = 245
Score = 169 bits (428), Expect = 3e-40, Method: Composition-based stats.
Identities = 117/238 (49%), Positives = 161/238 (67%), Gaps = 2/238 (0%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R SGR +Q R+I LTR +++AEGS LV+FGDT +L A++E VP W+R K GW+TA
Sbjct: 7 RPSGRATDQTRDIRLTRDYTRHAEGSVLVEFGDTRVLCNASVEAGVPRWLRGKKQGWVTA 66
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
EYGMLPR+T R REA G+QGGR+ EIQR+IGR+LR+ ++L LG I +DCDVIQA
Sbjct: 67 EYGMLPRATHTRGGREASRGKQGGRTVEIQRLIGRSLRASINLKKLGEFTITVDCDVIQA 126
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
DGGTRTAAITG VAL D +++++ K ++++S G+ G P+VDLDY E
Sbjct: 127 DGGTRTAAITGGCVALVDAVRYLQRE--KLIKGDPFHQLISSVSVGIYQGTPVVDLDYPE 184
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
DS D N VM ++G ++EVQG+AE T+S+ AML+LA+ +L Q++ +
Sbjct: 185 DSRAGTDMNVVMAENGELIEVQGTAESGTYSRAELNAMLDLAEKAGGELFDHQREALG 242
>gi|119512637|ref|ZP_01631712.1| Ribonuclease PH [Nodularia spumigena CCY9414]
gi|119462708|gb|EAW43670.1| Ribonuclease PH [Nodularia spumigena CCY9414]
Length = 247
Score = 169 bits (428), Expect = 3e-40, Method: Composition-based stats.
Identities = 101/243 (41%), Positives = 145/243 (59%), Gaps = 6/243 (2%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R GRQ ++R IS +++A GS L KFGDT +L T ++ E VP ++ T GW+T+
Sbjct: 5 RPDGRQPYELRPISFHAGFTRFAPGSVLTKFGDTQILCTVSVSEGVPKFLAGTGKGWLTS 64
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
EY MLP ST R R + GR+QEIQR+IGR+LR+ +D ALG R + +D DV+QA
Sbjct: 65 EYRMLPSSTQERQPR--ELLKLSGRTQEIQRLIGRSLRAAIDFEALGERTLTVDADVLQA 122
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
D GTRTAAITG +VAL + + + + VAAIS G+L G P +DL+Y E
Sbjct: 123 DAGTRTAAITGGFVALAHAVGQLLHSGVLERSPLCGQ--VAAISVGLLQGEPYLDLNYIE 180
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS-- 239
D VD N VM + I+E+QG+AE ++S+ +L+ A+ I L+ Q++ I+
Sbjct: 181 DVGAAVDFNVVMNQNLGIIEIQGTAEEGSYSRTQLNQLLDFAEKGIQQLLIAQREAIAGW 240
Query: 240 NEV 242
+
Sbjct: 241 EHL 243
>gi|257466146|ref|ZP_05630457.1| ribonuclease PH [Fusobacterium gonidiaformans ATCC 25563]
gi|315917304|ref|ZP_07913544.1| ribonuclease PH [Fusobacterium gonidiaformans ATCC 25563]
gi|313691179|gb|EFS28014.1| ribonuclease PH [Fusobacterium gonidiaformans ATCC 25563]
Length = 249
Score = 169 bits (428), Expect = 3e-40, Method: Composition-based stats.
Identities = 114/240 (47%), Positives = 162/240 (67%), Gaps = 2/240 (0%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R+ GR+ENQ+REI +TR + +AEGS L++ G+T ++ TA++ EKVP +I+NT GW+TA
Sbjct: 3 RIDGRKENQLREIKITRDFNIHAEGSVLIESGNTKVICTASVSEKVPSFIKNTGKGWLTA 62
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
EY M+PR+TG R +REA G+ GR+ EIQR+IGRALRS +DL LG R I +DCDVIQA
Sbjct: 63 EYSMIPRATGERNQREAAKGKLSGRTMEIQRLIGRALRSSIDLEKLGERTITLDCDVIQA 122
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
DGGTRTA+ITGA+VA+ + + VAA+S G G +DL+Y E
Sbjct: 123 DGGTRTASITGAFVAMAIAAAKLLRE--GTITESPVLSSVAAVSVGKCEGNIFLDLNYVE 180
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
DS+ +VD N + D G +EVQG+ E ATF + A+L++A+ I L++ Q++V+ +
Sbjct: 181 DSSAEVDMNVIQNDLGEYIEVQGTGEEATFCRKELNALLDMAEIGIHQLLEKQREVLGED 240
>gi|261418318|ref|YP_003252000.1| ribonuclease PH [Geobacillus sp. Y412MC61]
gi|319767722|ref|YP_004133223.1| ribonuclease PH [Geobacillus sp. Y412MC52]
gi|261374775|gb|ACX77518.1| ribonuclease PH [Geobacillus sp. Y412MC61]
gi|317112588|gb|ADU95080.1| ribonuclease PH [Geobacillus sp. Y412MC52]
Length = 256
Score = 169 bits (428), Expect = 3e-40, Method: Composition-based stats.
Identities = 117/241 (48%), Positives = 154/241 (63%), Gaps = 3/241 (1%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR GR ++R + + K+AEGS L++ GDT ++ TAT+EEKVP ++R GWIT
Sbjct: 1 MRADGRSSCELRPVHIHPHYMKHAEGSVLIEIGDTKVICTATVEEKVPSFMRGGGKGWIT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPR+T R REA G+ GR+ EIQR+IGRALRSVVDL LG R I IDCDVIQ
Sbjct: 61 AEYGMLPRATEQRNVREASKGKVSGRTMEIQRLIGRALRSVVDLEQLGERTIWIDCDVIQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY-PIVDLDY 179
ADGGTRTA+ITGA+VAL L + + + ++ +AA S G+ + I+DLDY
Sbjct: 121 ADGGTRTASITGAYVALVLALAKLVEE--GKLEALPIRDFLAATSVGIDPEHGVILDLDY 178
Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
ED+ VD N VMT +G VE+QG+ E A FS+ +L A+ I LI +Q+ +
Sbjct: 179 NEDARAKVDMNVVMTGAGQFVEIQGTGEEAVFSRAELDELLEAAQIGIEQLIAVQRCALG 238
Query: 240 N 240
Sbjct: 239 E 239
>gi|47097379|ref|ZP_00234931.1| ribonuclease PH [Listeria monocytogenes str. 1/2a F6854]
gi|254898601|ref|ZP_05258525.1| ribonuclease PH [Listeria monocytogenes J0161]
gi|254911909|ref|ZP_05261921.1| ribonuclease PH [Listeria monocytogenes J2818]
gi|254936235|ref|ZP_05267932.1| ribonuclease PH [Listeria monocytogenes F6900]
gi|47014251|gb|EAL05232.1| ribonuclease PH [Listeria monocytogenes str. 1/2a F6854]
gi|258608825|gb|EEW21433.1| ribonuclease PH [Listeria monocytogenes F6900]
gi|293589869|gb|EFF98203.1| ribonuclease PH [Listeria monocytogenes J2818]
Length = 248
Score = 169 bits (428), Expect = 3e-40, Method: Composition-based stats.
Identities = 109/242 (45%), Positives = 156/242 (64%), Gaps = 1/242 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR+ GR+ N +R I +T + EGS L+ G+T ++ +A++E KVP ++R GWI+
Sbjct: 1 MRVDGRESNALRNIEITPDYLMHPEGSVLIASGNTKVICSASVETKVPPFMRGEGRGWIS 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEY MLPR+T R RE+ G+ GR+ EIQR+IGRALR+VVDL ALG R I +DCDVIQ
Sbjct: 61 AEYSMLPRATNTRNIRESSKGKVTGRTMEIQRLIGRALRAVVDLDALGERTIWLDCDVIQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+ITGA++A+ + +++ F V A + G ++DL+Y
Sbjct: 121 ADGGTRTASITGAFIAMVMAIAKLDEAVP-FAKFPVKDFLAATSVGVLEEGGTVLDLNYV 179
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
EDS VD N +MT SG VE+QG+ E ATFS+ ++ L K I +LI++QK+ + +
Sbjct: 180 EDSAAQVDMNIIMTGSGAFVELQGTGEEATFSETELAELIALGKKGICELIEIQKETLGD 239
Query: 241 EV 242
+V
Sbjct: 240 KV 241
>gi|111018437|ref|YP_701409.1| ribonuclease PH [Rhodococcus jostii RHA1]
gi|110817967|gb|ABG93251.1| tRNA nucleotidyltransferase [Rhodococcus jostii RHA1]
Length = 262
Score = 169 bits (428), Expect = 3e-40, Method: Composition-based stats.
Identities = 105/238 (44%), Positives = 157/238 (65%), Gaps = 1/238 (0%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R GR ++++RE+ +TR + + GS LV+FG+T ++ TA++E+ VP W + + GW+TA
Sbjct: 4 REDGRADDELREVKITRGFTTHPAGSVLVEFGNTRVMCTASVEDGVPRWRQGSGLGWLTA 63
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
EY MLP +T R RE+V G+ GGR+QEI R++GR+LR+ +DL+A+G I +DCDV+QA
Sbjct: 64 EYAMLPAATHTRSGRESVKGKVGGRTQEISRLVGRSLRACIDLAAIGENTIALDCDVLQA 123
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
DGGTRTAAITGA+VAL D + ++ Q + +AA+S G++ G +DL Y E
Sbjct: 124 DGGTRTAAITGAYVALVDAVTYLRAAGRLAD-PQPISCGIAAVSVGVVDGRVRLDLPYEE 182
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
DS +VD N V TD+G +VE+QG+ E ATF + +L+ A L ++QK +
Sbjct: 183 DSRAEVDMNVVATDTGTLVEIQGTGEGATFPRSTLDKLLDSALAGCEQLFEIQKAALE 240
>gi|37928170|pdb|1UDQ|A Chain A, Crystal Structure Of The Trna Processing Enzyme Rnase Ph
T125a Mutant From Aquifex Aeolicus
Length = 255
Score = 169 bits (428), Expect = 3e-40, Method: Composition-based stats.
Identities = 114/236 (48%), Positives = 156/236 (66%), Gaps = 2/236 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR GR+E+Q+R +S+ R +Y EGSCL+ FG T ++ TA++ E VP W++ GWIT
Sbjct: 1 MRSDGRKEDQLRPVSIQRDFLEYPEGSCLISFGKTKVICTASVIENVPNWLKGKGQGWIT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEY MLPR+T R RE+V GR GGR+ EIQRMIGRA+R+ V+L+ +G R I +DCDVIQ
Sbjct: 61 AEYSMLPRATQQRTIRESVQGRIGGRTHEIQRMIGRAMRTAVELTKIGERTIWVDCDVIQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGG RTAAITGA+VA+ D + + +K VAA+S G++ ++DL++
Sbjct: 121 ADGGARTAAITGAFVAVADAIIKLHKE--GIIEETPIKDFVAAVSVGIVNDRILLDLNFE 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
EDS VD N V T SG + EV E +F++D ML+LA+ I +LI+LQK
Sbjct: 179 EDSAAQVDMNVVGTGSGRLSEVHTMGEEYSFTKDELIKMLDLAQKGINELIELQKK 234
>gi|238755573|ref|ZP_04616910.1| Ribonuclease PH [Yersinia ruckeri ATCC 29473]
gi|238706173|gb|EEP98553.1| Ribonuclease PH [Yersinia ruckeri ATCC 29473]
Length = 238
Score = 169 bits (428), Expect = 3e-40, Method: Composition-based stats.
Identities = 121/240 (50%), Positives = 162/240 (67%), Gaps = 2/240 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR +GR Q+R ++LTR +K+AEGS LV+FGDT +L TAT+EE VP +++ GWIT
Sbjct: 1 MRPAGRALEQVRPLTLTRNYTKHAEGSVLVEFGDTKVLCTATVEEGVPRFLKGQGQGWIT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPR+T +R REA G+QGGR+ EIQR+I R+LR+ VDL LG I +DCDVIQ
Sbjct: 61 AEYGMLPRATHSRNPREAAKGKQGGRTLEIQRLIARSLRAAVDLKKLGEFTITLDCDVIQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+I+GA VAL D L + S +KG VAA+S G++ G + DL+Y
Sbjct: 121 ADGGTRTASISGACVALADALNKLVAN--GKLKSNPMKGLVAAVSVGIVKGKAMCDLEYV 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
EDS + D N VM + G ++EVQG+AE FS + A+L LA+ I + + Q+ V+
Sbjct: 179 EDSAAETDMNVVMMEDGRMIEVQGTAEGEPFSHEELLALLALARGGIESIFQAQRAVLEQ 238
>gi|261337982|ref|ZP_05965866.1| tRNA nucleotidyltransferase [Bifidobacterium gallicum DSM 20093]
gi|270277482|gb|EFA23336.1| tRNA nucleotidyltransferase [Bifidobacterium gallicum DSM 20093]
Length = 255
Score = 169 bits (427), Expect = 3e-40, Method: Composition-based stats.
Identities = 107/239 (44%), Positives = 155/239 (64%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+R GR ++MR I +T + EGS L+ G+T ++ TAT + VP W +++ GW+T
Sbjct: 14 VRPDGRAVDEMRPIRITDSFTDVPEGSVLIACGNTRVMCTATFTQGVPRWRKDSGQGWVT 73
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEY MLPR+T R RE+V G+ GGR+ EI R+IGR LR VV++ ALG QI +DCDV+Q
Sbjct: 74 AEYSMLPRATAERTDRESVRGKIGGRTHEISRLIGRCLRGVVNMKALGENQIQLDCDVLQ 133
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+ITGA+VA+ + L+ E+ +V+K V+A+S G++ G P++DL Y
Sbjct: 134 ADGGTRTASITGAYVAMVEALRWAEERRFIRSADKVIKDSVSAVSVGVINGTPMLDLPYI 193
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
EDS D N MT SG +E+QG+AE F++D +L+LA +L Q+ V++
Sbjct: 194 EDSQAMTDMNVAMTGSGEFIEIQGTAEHRPFTRDELNVLLDLATKGNKELQAAQRAVLN 252
>gi|37928172|pdb|1UDS|A Chain A, Crystal Structure Of The Trna Processing Enzyme Rnase Ph
R126a Mutant From Aquifex Aeolicus
Length = 255
Score = 169 bits (427), Expect = 3e-40, Method: Composition-based stats.
Identities = 114/236 (48%), Positives = 156/236 (66%), Gaps = 2/236 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR GR+E+Q+R +S+ R +Y EGSCL+ FG T ++ TA++ E VP W++ GWIT
Sbjct: 1 MRSDGRKEDQLRPVSIQRDFLEYPEGSCLISFGKTKVICTASVIENVPNWLKGKGQGWIT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEY MLPR+T R RE+V GR GGR+ EIQRMIGRA+R+ V+L+ +G R I +DCDVIQ
Sbjct: 61 AEYSMLPRATQQRTIRESVQGRIGGRTHEIQRMIGRAMRTAVELTKIGERTIWVDCDVIQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGT TAAITGA+VA+ D + + +K VAA+S G++ ++DL++
Sbjct: 121 ADGGTATAAITGAFVAVADAIIKLHKE--GIIEETPIKDFVAAVSVGIVNDRILLDLNFE 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
EDS VD N V T SG + EV E +F++D ML+LA+ I +LI+LQK
Sbjct: 179 EDSAAQVDMNVVGTGSGRLSEVHTMGEEYSFTKDELIKMLDLAQKGINELIELQKK 234
>gi|219670395|ref|YP_002460830.1| ribonuclease PH [Desulfitobacterium hafniense DCB-2]
gi|219540655|gb|ACL22394.1| ribonuclease PH [Desulfitobacterium hafniense DCB-2]
Length = 247
Score = 169 bits (427), Expect = 3e-40, Method: Composition-based stats.
Identities = 112/236 (47%), Positives = 151/236 (63%), Gaps = 2/236 (0%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R GR+ ++R + LTR + EGS L++ G T ++ TAT+EEKVP++ + T GW+TA
Sbjct: 3 RFDGREAFELRPVKLTRGFTNIPEGSVLIEVGQTRVICTATVEEKVPLFKKGTGSGWVTA 62
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
EY MLPR+T R RE+ G+ GR+ EIQR+IGRALRSVVDL LG R I +DCDVIQA
Sbjct: 63 EYSMLPRATQTRNPRESSKGKLTGRTMEIQRLIGRALRSVVDLKKLGERTIWLDCDVIQA 122
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
DGGTRTA+ITGA+VAL D + + + +AA+S G + G ++DL Y E
Sbjct: 123 DGGTRTASITGAYVALVDAVN--HLLAKGLIKENPILDSLAAVSVGKVDGMALLDLAYEE 180
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
DS +VD N VMT G VE+QG+AE F ++ L LA+ I +L+ +QK
Sbjct: 181 DSKAEVDMNVVMTGQGKFVEIQGTAEDIPFGREELDQFLELAEKGIQELMGMQKAA 236
>gi|237745873|ref|ZP_04576353.1| ribonuclease PH/Ham1 protein [Oxalobacter formigenes HOxBLS]
gi|229377224|gb|EEO27315.1| ribonuclease PH/Ham1 protein [Oxalobacter formigenes HOxBLS]
Length = 248
Score = 169 bits (427), Expect = 3e-40, Method: Composition-based stats.
Identities = 120/239 (50%), Positives = 161/239 (67%), Gaps = 2/239 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+R +GR + MR I R +KYAEGS L FGDT ++ TA++EE VP ++R GW+T
Sbjct: 9 IRSNGRPLDAMRSIEFIRNYTKYAEGSVLTVFGDTQVICTASIEESVPPFLRGRGRGWLT 68
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPRST R++REA GRQ GR+QEIQR+IGR++R+ DL+A G R + +DCDVIQ
Sbjct: 69 AEYGMLPRSTHTRMEREAARGRQSGRTQEIQRLIGRSIRAAFDLNAFGERTLRLDCDVIQ 128
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+I+G +A +D M + L+ VAAIS G++ G P++DLDY
Sbjct: 129 ADGGTRTASISGVMIAAYDAFSLMVEE--GLIEKVPLRHFVAAISVGVIQGVPMLDLDYQ 186
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
EDS+ D D N VMT++G VE+QG+AE FS ML +A+ I +LI +QK V+
Sbjct: 187 EDSSCDTDMNVVMTEAGDFVEIQGTAEGGAFSHSLLNEMLGMAQQGIGELIHMQKRVLG 245
>gi|148359584|ref|YP_001250791.1| ribonuclease PH [Legionella pneumophila str. Corby]
gi|296107626|ref|YP_003619327.1| ribonuclease PH [Legionella pneumophila 2300/99 Alcoy]
gi|166228288|sp|A5IDJ5|RNPH_LEGPC RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|148281357|gb|ABQ55445.1| Ribonuclease PH (RNase PH) (tRNA nucleotidyltransferase)
[Legionella pneumophila str. Corby]
gi|295649528|gb|ADG25375.1| ribonuclease PH [Legionella pneumophila 2300/99 Alcoy]
Length = 235
Score = 169 bits (427), Expect = 3e-40, Method: Composition-based stats.
Identities = 115/237 (48%), Positives = 163/237 (68%), Gaps = 2/237 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR S R+ +Q+R +++TR + YAEGS LV+FG T ++ A++ E VP +++ GWIT
Sbjct: 1 MRPSNREHDQLRPVTITRNFTNYAEGSVLVEFGQTKVICNASIVEGVPRFLKGKNQGWIT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPR+T +R +REA G+QGGR+ EIQR+IGR+LR+ +DL LG I +DCDVIQ
Sbjct: 61 AEYGMLPRATHSRTEREASKGKQGGRTLEIQRLIGRSLRACIDLKVLGENTITLDCDVIQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTAAITG+ VA+ D + M + +VAA+S G+ G P++DLDY
Sbjct: 121 ADGGTRTAAITGSCVAMRDAIHWMVQRE--KIKKMPVFNYVAAVSVGIYRGQPVLDLDYA 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED + D N VM + GH +EVQG+AE +F+++ +ML+LA+ I LI++QK+
Sbjct: 179 EDVLAETDMNVVMNEQGHFIEVQGTAEDNSFNREQLNSMLSLAEIGIPQLIEIQKNA 235
>gi|187478429|ref|YP_786453.1| ribonuclease PH [Bordetella avium 197N]
gi|115423015|emb|CAJ49545.1| ribonuclease PH [Bordetella avium 197N]
Length = 244
Score = 169 bits (427), Expect = 3e-40, Method: Composition-based stats.
Identities = 115/237 (48%), Positives = 158/237 (66%), Gaps = 2/237 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+R GR + +R SL R ++YAEGS LV G+T +L TA++ EKVP +++ GW+T
Sbjct: 8 LRADGRAVDTLRAFSLKRGFTRYAEGSVLVVAGNTQVLCTASVLEKVPPFLKGKGEGWVT 67
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPR+T R REA G+Q GR+QEIQR+IGR+LR+V DL ALG R + +DCDV+Q
Sbjct: 68 AEYGMLPRATHTRGDREAARGKQSGRTQEIQRLIGRSLRAVFDLKALGERTLHLDCDVLQ 127
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTR A+ITGAWVA D + + + ++ HVAA+S G++ G ++DL+Y
Sbjct: 128 ADGGTRCASITGAWVAAADAVALLMER--GLLTQNPIRDHVAAVSVGLVGGRAVLDLNYE 185
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
EDS + D N +MT +G VEVQG+ E ATF++ ML LA+ IA L+ Q+
Sbjct: 186 EDSACEADVNVIMTGAGAFVEVQGTGEEATFTRAQLDTMLTLAEGGIAKLVAEQRAA 242
>gi|226360555|ref|YP_002778333.1| ribonuclease PH [Rhodococcus opacus B4]
gi|226239040|dbj|BAH49388.1| ribonuclease PH [Rhodococcus opacus B4]
Length = 262
Score = 169 bits (427), Expect = 3e-40, Method: Composition-based stats.
Identities = 106/238 (44%), Positives = 157/238 (65%), Gaps = 1/238 (0%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R GR ++++RE+ +TR + + GS LV+FG+T ++ TA++E+ VP W + T GW+TA
Sbjct: 4 REDGRADDELREVKITRGFTTHPAGSVLVEFGNTRVMCTASVEDGVPRWRQGTGLGWLTA 63
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
EY MLP +T R RE+V G+ GGR+QEI R++GR+LR+ +DL+A+G I +DCDV+QA
Sbjct: 64 EYAMLPAATHTRSGRESVKGKVGGRTQEISRLVGRSLRACIDLAAIGENTIALDCDVLQA 123
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
DGGTRTAAITGA+VAL D + ++ Q + +AA+S G++ G +DL Y E
Sbjct: 124 DGGTRTAAITGAYVALVDAVTYLRAAGRLAD-PQPISCGIAAVSVGVVDGRVRLDLPYEE 182
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
DS +VD N V TD+G +VE+QG+ E ATF + +L+ A L ++QK +
Sbjct: 183 DSRAEVDMNVVATDTGTLVEIQGTGEGATFPRSTLDKLLDSALAGCEQLFEIQKAALE 240
>gi|300859074|ref|YP_003784057.1| ribonuclease PH [Corynebacterium pseudotuberculosis FRC41]
gi|300686528|gb|ADK29450.1| ribonuclease PH [Corynebacterium pseudotuberculosis FRC41]
gi|302206777|gb|ADL11119.1| Ribonuclease PH [Corynebacterium pseudotuberculosis C231]
gi|302331330|gb|ADL21524.1| Ribonuclease PH [Corynebacterium pseudotuberculosis 1002]
gi|308277022|gb|ADO26921.1| Ribonuclease PH [Corynebacterium pseudotuberculosis I19]
Length = 247
Score = 169 bits (427), Expect = 3e-40, Method: Composition-based stats.
Identities = 106/238 (44%), Positives = 146/238 (61%), Gaps = 3/238 (1%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R GR +QMR + +TR + GS LV+FG+T ++ TA+ E VP + R++ GW+TA
Sbjct: 11 RADGRAVDQMRTVKITRGFTTNPAGSVLVEFGNTRVMCTASAEIGVPRFKRDSGEGWLTA 70
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
EY MLP +T +R RE++ G+ GR+ EI R+IGR+LR+ VDLS LG I IDCDV+QA
Sbjct: 71 EYAMLPAATLDRNPRESMRGKVKGRTHEISRLIGRSLRAAVDLSELGENTINIDCDVLQA 130
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
DGGTRTA+ITGA+VAL LK VAA+S G++ G +DL Y E
Sbjct: 131 DGGTRTASITGAYVAL--ADAISHLQKQGVVPGNPLKDPVAAVSVGVIDGAVCLDLPYEE 188
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
DS DVD N +M +G VE+QG+ E TF +D +L+ A+ +L+ QK +
Sbjct: 189 DSRADVDMNVIM-QNGRFVEIQGTGEHNTFDRDELARILDFAEKGCTELVAAQKAALG 245
>gi|52842229|ref|YP_096028.1| ribonuclease PH [Legionella pneumophila subsp. pneumophila str.
Philadelphia 1]
gi|54294910|ref|YP_127325.1| ribonuclease PH [Legionella pneumophila str. Lens]
gi|54297939|ref|YP_124308.1| ribonuclease PH [Legionella pneumophila str. Paris]
gi|21759423|sp|Q9X528|RNPH_LEGPN RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|61215813|sp|Q5WV28|RNPH_LEGPL RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|61215816|sp|Q5X3P0|RNPH_LEGPA RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|61215829|sp|Q5ZTZ6|RNPH_LEGPH RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|4704704|gb|AAD28218.1|AF120720_1 ribonuclease PH [Legionella pneumophila 130b]
gi|52629340|gb|AAU28081.1| ribonuclease PH [Legionella pneumophila subsp. pneumophila str.
Philadelphia 1]
gi|53751724|emb|CAH13146.1| Ribonuclease PH (RNase PH) (tRNA nucleotidyltransferase)
[Legionella pneumophila str. Paris]
gi|53754742|emb|CAH16229.1| Ribonuclease PH (RNase PH) (tRNA nucleotidyltransferase)
[Legionella pneumophila str. Lens]
gi|307610737|emb|CBX00344.1| ribonuclease PH [Legionella pneumophila 130b]
Length = 235
Score = 169 bits (427), Expect = 3e-40, Method: Composition-based stats.
Identities = 115/237 (48%), Positives = 162/237 (68%), Gaps = 2/237 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR S R+ +Q+R +++TR + YAEGS LV+FG T ++ A++ E VP +++ GWIT
Sbjct: 1 MRPSNREHDQLRPVTITRNFTNYAEGSVLVEFGQTKVICNASIVEGVPRFLKGKNQGWIT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPR+T +R +REA G+QGGR+ EIQR+IGR+LR+ +DL LG I +DCDVIQ
Sbjct: 61 AEYGMLPRATHSRTEREASKGKQGGRTLEIQRLIGRSLRACIDLKVLGENTITLDCDVIQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTAAITG+ VA+ D + M +VAA+S G+ G P++DLDY
Sbjct: 121 ADGGTRTAAITGSCVAMRDAIHWMVQRE--KIKKMPAFNYVAAVSVGIYRGQPVLDLDYA 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED + D N VM + GH +EVQG+AE +F+++ +ML+LA+ I LI++QK+
Sbjct: 179 EDVLAETDMNVVMNEQGHFIEVQGTAEDNSFNREQLNSMLSLAEIGIPQLIEIQKNA 235
>gi|118594124|ref|ZP_01551471.1| polynucleotide phosphorylase/polyadenylase [Methylophilales
bacterium HTCC2181]
gi|118439902|gb|EAV46529.1| polynucleotide phosphorylase/polyadenylase [Methylophilales
bacterium HTCC2181]
Length = 716
Score = 169 bits (427), Expect = 4e-40, Method: Composition-based stats.
Identities = 48/242 (19%), Positives = 93/242 (38%), Gaps = 18/242 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +R I + V A GS L G+T + ATL +E++ ++
Sbjct: 324 RIDGRDTRTVRPIEIRTGVLPRAHGSALFTRGETQAIVVATLGTGRDEQIIDALQGEFKD 383
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P +TG + R+ G + R L + + I + +
Sbjct: 384 RFMLHYNFPPYATGETGRVGTPKRREIGHGKL----AKRGLSAALPSKEDFDYTIRLVSE 439
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A+I G +A+ D M D + + + + A+ +
Sbjct: 440 ITESNGSSSMASICGGTMAMMDAGVPMTDHVAGIAMGLIKEDNRVAVLTD---------I 490
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D TD+G I +Q + + + L+ A++ I ++K+ K
Sbjct: 491 LGDEDHLGDMDFKVAGTDNG-ITALQMDIKITGITSEIMQVALSQAREGIDHILKIMKKT 549
Query: 238 IS 239
+
Sbjct: 550 LK 551
Score = 107 bits (266), Expect = 2e-21, Method: Composition-based stats.
Identities = 37/228 (16%), Positives = 75/228 (32%), Gaps = 27/228 (11%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGMLPR 68
+++ + + A+G+ +V +GDT +L TA E + + T G +P
Sbjct: 24 LTIETGEIGRQADGAVMVSYGDTVVLVTAVGNKNAREGQDFFPLTVDYQEKTYAAGKIPG 83
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
R GR + R+I R LR + + QI+ ++ +
Sbjct: 84 GFFKR------EGRPSEKETLTCRLIDRPLRPLFPKNFYNEIQIVATVMSSDSEIDSDIP 137
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
AI GA A G V A G + +++ + ++D
Sbjct: 138 AIIGASAA-------------LAISGIPFYGPVGASRVGYIDEKFVINPTKTQLVDSELD 184
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
++ V+ A+ + + + +IK+ +
Sbjct: 185 LVVAG-SDAAVLMVESEAKE--LPEKVMLDAVLAGHKAMQPVIKMINE 229
>gi|303229137|ref|ZP_07315938.1| tRNA nucleotidyltransferase [Veillonella atypica ACS-134-V-Col7a]
gi|302516150|gb|EFL58091.1| tRNA nucleotidyltransferase [Veillonella atypica ACS-134-V-Col7a]
Length = 257
Score = 169 bits (427), Expect = 4e-40, Method: Composition-based stats.
Identities = 121/240 (50%), Positives = 161/240 (67%), Gaps = 4/240 (1%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR R Q+R I +TR ++YAEGS L++ G T ++ TAT+EE VP W++ + GW+T
Sbjct: 1 MRSDNRTAGQLRPIKITRHFTEYAEGSVLIECGKTKVICTATIEENVPRWLKGSSQGWVT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEY +LPRST RV REA G+Q GR+ EIQR+IGRALR+VVDL ALG R I +DCDVIQ
Sbjct: 61 AEYSLLPRSTKTRVSREAARGKQTGRTVEIQRLIGRALRAVVDLKALGERSITVDCDVIQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+ITGA+VAL D + D + + AAIS G+ PI DL Y
Sbjct: 121 ADGGTRTASITGAFVALVDAI----DYTFGGFGKFPITDFCAAISVGIGPEGPITDLCYE 176
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
EDS VD N V T +G+++EVQG+ E TFS+D +L+LA+ +L+ +Q+DV+ +
Sbjct: 177 EDSAAVVDMNVVRTGAGNLIEVQGTGEHGTFSRDELNQLLDLAESATDELMAVQRDVLGS 236
>gi|116626750|ref|YP_828906.1| ribonuclease PH [Candidatus Solibacter usitatus Ellin6076]
gi|122251374|sp|Q01NZ9|RNPH_SOLUE RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|116229912|gb|ABJ88621.1| RNAse PH [Candidatus Solibacter usitatus Ellin6076]
Length = 238
Score = 169 bits (427), Expect = 4e-40, Method: Composition-based stats.
Identities = 114/239 (47%), Positives = 157/239 (65%), Gaps = 2/239 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR R Q+R + +T AEGS L+K G+TH+L AT+E+ VP ++RNT GW+T
Sbjct: 1 MRTDNRTAGQLRPVQITTGCLMTAEGSALIKVGNTHVLCAATIEDTVPPFLRNTGKGWVT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEY MLPR+T R RE GR GR+ EIQR+IGR++RS VD+S+ G R +IIDCDVIQ
Sbjct: 61 AEYSMLPRATAKRTPREVTKGRPSGRTHEIQRLIGRSMRSAVDMSSFGERTLIIDCDVIQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+ITGA+VA+ + + + + + ++ +VAA S G++ G P++DL Y
Sbjct: 121 ADGGTRTASITGAFVAMALAFRQLIE--YRALKANPIRDYVAATSVGLVGGIPMLDLCYE 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
EDS DVD N VMT G VEVQ +AE + F + LA+ IA L+++QK++I
Sbjct: 179 EDSQADVDMNVVMTGGGKFVEVQATAEHSAFDDAQMAELTELARTGIAQLVRMQKEIIE 237
>gi|254852893|ref|ZP_05242241.1| ribonuclease PH [Listeria monocytogenes FSL R2-503]
gi|254993151|ref|ZP_05275341.1| ribonuclease PH [Listeria monocytogenes FSL J2-064]
gi|300764387|ref|ZP_07074381.1| ribonuclease PH [Listeria monocytogenes FSL N1-017]
gi|258606228|gb|EEW18836.1| ribonuclease PH [Listeria monocytogenes FSL R2-503]
gi|300515039|gb|EFK42092.1| ribonuclease PH [Listeria monocytogenes FSL N1-017]
Length = 248
Score = 169 bits (427), Expect = 4e-40, Method: Composition-based stats.
Identities = 109/242 (45%), Positives = 157/242 (64%), Gaps = 1/242 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR+ GR+ N +R I +T + EGS L+ G+T ++ +A++E KVP ++R GWI+
Sbjct: 1 MRVDGRESNALRNIEVTPDYLMHPEGSVLIASGNTKVICSASVETKVPPFMRGEGRGWIS 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEY MLPR+T R RE+ G+ GR+ EIQR+IGRALR+VVDL ALG R I +DCDVIQ
Sbjct: 61 AEYSMLPRATNTRNIRESSKGKVTGRTMEIQRLIGRALRAVVDLDALGERTIWLDCDVIQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+ITGA++A+ + +++ F V A + G ++DL+Y
Sbjct: 121 ADGGTRTASITGAFIAMVMAIAKLDEAVP-FAKFPVKDFLAATSVGVLEEGGTVLDLNYV 179
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
EDS VD N +MT SG VE+QG+ E ATFS+ ++ L K I++LI++QK+ + +
Sbjct: 180 EDSAAQVDMNIIMTGSGAFVELQGTGEEATFSETELAELIVLGKKGISELIEIQKETLGD 239
Query: 241 EV 242
+V
Sbjct: 240 KV 241
>gi|167622362|ref|YP_001672656.1| ribonuclease PH [Shewanella halifaxensis HAW-EB4]
gi|189043775|sp|B0TQK4|RNPH_SHEHH RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|167352384|gb|ABZ74997.1| ribonuclease PH [Shewanella halifaxensis HAW-EB4]
Length = 237
Score = 169 bits (427), Expect = 4e-40, Method: Composition-based stats.
Identities = 123/239 (51%), Positives = 165/239 (69%), Gaps = 2/239 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR S R Q R +++TR+ + +AEGS LV+FGDT +L TA+ EE VP +++ GW+T
Sbjct: 1 MRPSNRTPAQSRPVTITRQFTAHAEGSVLVEFGDTKVLCTASFEEGVPRFLKGQGQGWVT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPRST +R++REA G+Q GR+QEIQR+IGR+LR+ VD+ LG I+IDCDVIQ
Sbjct: 61 AEYGMLPRSTHSRMQREAARGKQSGRTQEIQRLIGRSLRAAVDMKLLGENTIVIDCDVIQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTAAITGA VAL D L + LK +AA+S G+ G PI DL+Y
Sbjct: 121 ADGGTRTAAITGACVALVDALNW--ARGKGILKTNPLKFLIAAVSVGIYKGEPICDLEYI 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
EDS + D N VMT++G I+E+QG+AE FS + ++L LAK I +++ +QK +S
Sbjct: 179 EDSAAETDMNVVMTETGKIIEIQGTAEGEPFSHEELLSLLELAKHGIREIVDIQKASLS 237
>gi|313633649|gb|EFS00407.1| ribonuclease PH [Listeria seeligeri FSL N1-067]
Length = 251
Score = 169 bits (427), Expect = 4e-40, Method: Composition-based stats.
Identities = 110/242 (45%), Positives = 155/242 (64%), Gaps = 1/242 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR+ GR+ N +R+I +T + EGS L+ G+T ++ +A++E KVP ++R GWI+
Sbjct: 4 MRVDGRESNALRKIEVTPDYLMHPEGSVLIASGNTKVICSASVETKVPPFMRGEGRGWIS 63
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEY MLPR+T R RE+ G+ GR+ EIQR+IGRALR+VVDL ALG R I +DCDVIQ
Sbjct: 64 AEYAMLPRATNTRNIRESSKGKVTGRTMEIQRLIGRALRAVVDLEALGERTIWLDCDVIQ 123
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+ITGA++A+ + ++ F V A + G ++DL+Y
Sbjct: 124 ADGGTRTASITGAFIAMVMAIAKLDAEVP-FTKFPVKDFLAATSVGVLEEGGTVLDLNYI 182
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
EDS VD N +MT SG VE+QG+ E TFS+ ++ L K IA+LI++QK+ +
Sbjct: 183 EDSAAQVDMNIIMTGSGAFVELQGTGEETTFSEAELAELIALGKKGIAELIEIQKETLGE 242
Query: 241 EV 242
EV
Sbjct: 243 EV 244
>gi|161611257|ref|YP_296683.2| ribonuclease PH [Ralstonia eutropha JMP134]
Length = 239
Score = 169 bits (427), Expect = 4e-40, Method: Composition-based stats.
Identities = 128/239 (53%), Positives = 165/239 (69%), Gaps = 2/239 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR SGR + +R ISLTR +++AEGS L FGDT +L TA++ KVP + + GW+T
Sbjct: 1 MRPSGRAADALRSISLTRHYTRHAEGSVLCAFGDTKVLCTASVLAKVPPHKKGSGEGWVT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPR+T R REA G+Q GR+QEIQR+IGRA+RSV DL+ALG + +DCDV+Q
Sbjct: 61 AEYGMLPRATHTRSDREAARGKQTGRTQEIQRLIGRAMRSVFDLAALGEYTLHLDCDVLQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTAAITGA+VA HD + M + + ++ VAA+S GM+ G P++DLDY
Sbjct: 121 ADGGTRTAAITGAFVAAHDAISTM--LRDGLIAASPIRDFVAAVSVGMVDGVPLLDLDYA 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
EDS D D N VMT SG VEVQG+AE A FS+ AM LA+D IA L++ Q+ +
Sbjct: 179 EDSNCDTDMNVVMTGSGGFVEVQGTAEGAAFSRADLDAMTRLAEDGIAQLVRHQRQALG 237
>gi|254670670|emb|CBA06757.1| ribonuclease PH [Neisseria meningitidis alpha153]
gi|261392252|emb|CAX49772.1| ribonuclease PH (RNase PH; tRNA nucleotidyltransferase) [Neisseria
meningitidis 8013]
gi|325204479|gb|ADY99932.1| ribonuclease PH [Neisseria meningitidis M01-240355]
Length = 242
Score = 169 bits (427), Expect = 4e-40, Method: Composition-based stats.
Identities = 117/239 (48%), Positives = 170/239 (71%), Gaps = 3/239 (1%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+R+S R + +R+I +T +A+GSCL++ G+T ++ TA+++E VP ++R GW+T
Sbjct: 5 IRIS-RAADSLRDIKITPHFLPHADGSCLIECGNTKVICTASIDENVPPFLRGKNQGWVT 63
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLP ST +R++REA +G+Q GR+QEIQR+IGR+LR+VVD+ LG RQI+IDCDVIQ
Sbjct: 64 AEYGMLPASTASRMRREASAGKQSGRTQEIQRLIGRSLRAVVDMEKLGERQILIDCDVIQ 123
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+ITGA+VAL + + ++ VAA+S G++ G P++DLDY
Sbjct: 124 ADGGTRTASITGAFVALQIAVGKLVSD--GILSENPIREAVAAVSVGVVNGVPLLDLDYP 181
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
EDS D D N VMT SG I+E+QG+AE A FS D ++ LA+ I +L++ Q++ +S
Sbjct: 182 EDSGCDSDVNIVMTASGKIIEIQGTAEDAPFSLDELGKLVALAQKGIGELLQHQQNALS 240
>gi|116872609|ref|YP_849390.1| ribonuclease PH [Listeria welshimeri serovar 6b str. SLCC5334]
gi|123463713|sp|A0AHX9|RNPH_LISW6 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|116741487|emb|CAK20611.1| ribonuclease PH [Listeria welshimeri serovar 6b str. SLCC5334]
Length = 248
Score = 169 bits (427), Expect = 4e-40, Method: Composition-based stats.
Identities = 108/242 (44%), Positives = 160/242 (66%), Gaps = 1/242 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR+ GR++N +R+I +T + EGS L+ G+T ++ +A++E KVP ++R GWI+
Sbjct: 1 MRVDGREKNALRKIEVTPDYLMHPEGSVLIASGNTKVICSASVETKVPPFMRGEGRGWIS 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEY MLPR+T R RE+ G+ GR+ EIQR+IGRALR+VVDL ALG R I +DCDVIQ
Sbjct: 61 AEYSMLPRATNTRNIRESSKGKVTGRTMEIQRLIGRALRAVVDLDALGERTIWLDCDVIQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+ITGA++A+ + +++ F V A + G ++DL+Y
Sbjct: 121 ADGGTRTASITGAFIAMVMAIAKLDEQVP-FTKFPVKDFLAATSVGVLEEGGTVLDLNYI 179
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
EDS VD N +MT SG VE+QG+ E ATFS+ ++ L K I++LI++QK+++ +
Sbjct: 180 EDSAAQVDMNIIMTGSGAFVELQGTGEEATFSETELAELIALGKKGISELIEIQKEILGD 239
Query: 241 EV 242
++
Sbjct: 240 KI 241
>gi|313619283|gb|EFR91024.1| ribonuclease PH [Listeria innocua FSL S4-378]
gi|313624060|gb|EFR94144.1| ribonuclease PH [Listeria innocua FSL J1-023]
Length = 248
Score = 169 bits (427), Expect = 4e-40, Method: Composition-based stats.
Identities = 109/242 (45%), Positives = 158/242 (65%), Gaps = 1/242 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR GR++N +REI +T + EGS L+ G+T ++ +A++E KVP ++R GWI+
Sbjct: 1 MRFDGREKNALREIEVTPDYLMHPEGSVLIASGNTKVICSASVETKVPPFMRGEGRGWIS 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEY MLPR+T R RE+ G+ GR+ EIQR+IGRALR+VVDL ALG R I +DCDVIQ
Sbjct: 61 AEYSMLPRATNTRNIRESSKGKVTGRTMEIQRLIGRALRAVVDLDALGERTIWLDCDVIQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+ITGA++A+ + +++ F V A + G ++DL+Y
Sbjct: 121 ADGGTRTASITGAFIAMVMAIAKLDEEVP-FTKFPVKDFLAATSVGVLEEGGTVLDLNYV 179
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
EDS VD N +MT SG VE+QG+ E ATFS+ ++ L K I++LI++QK+ + +
Sbjct: 180 EDSAAQVDMNIIMTGSGAFVELQGTGEEATFSEAELAELIALGKKGISELIEIQKETLGD 239
Query: 241 EV 242
++
Sbjct: 240 KI 241
>gi|315606171|ref|ZP_07881199.1| tRNA nucleotidyltransferase [Actinomyces sp. oral taxon 180 str.
F0310]
gi|315312129|gb|EFU60218.1| tRNA nucleotidyltransferase [Actinomyces sp. oral taxon 180 str.
F0310]
Length = 255
Score = 169 bits (427), Expect = 4e-40, Method: Composition-based stats.
Identities = 112/239 (46%), Positives = 156/239 (65%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+R GR +Q+R +SLTR S EGS LV+FG+T +L A+ E VP W R++ GW+T
Sbjct: 6 LRADGRTPSQLRPVSLTRGWSGTGEGSVLVEFGNTRVLCVASFTEGVPRWKRDSGEGWVT 65
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEY MLPR+T R RE+V G+ GGR+QEI R+IGR+LR +VD+SALG I++DCDV++
Sbjct: 66 AEYSMLPRATEQRSSRESVKGKVGGRTQEISRLIGRSLRGIVDVSALGENTIVLDCDVLR 125
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA++TGA+VAL D + ++ ++VL V+A+S G++ G + DL Y
Sbjct: 126 ADGGTRTASVTGAYVALADAIAWAKERGILTPSARVLTDSVSAVSVGIIDGTAMADLPYV 185
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
ED D N V T G +EVQG+AE A FS++ +L+LA A L + QK +
Sbjct: 186 EDVRAQTDMNVVQTGDGRFIEVQGTAEHAPFSREELSELLDLATAGNAQLARAQKLALE 244
>gi|319948537|ref|ZP_08022668.1| ribonuclease PH [Dietzia cinnamea P4]
gi|319437784|gb|EFV92773.1| ribonuclease PH [Dietzia cinnamea P4]
Length = 261
Score = 168 bits (426), Expect = 4e-40, Method: Composition-based stats.
Identities = 110/238 (46%), Positives = 157/238 (65%), Gaps = 2/238 (0%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R GR +++R++++TR + + GS LV FG T ++ TA++ E VP W + + GW+TA
Sbjct: 8 RADGRGVDELRDVTITRGFTSHPAGSVLVTFGQTRVMCTASVTEGVPRWRKGSGLGWLTA 67
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
EY MLP +T R RE+V G+ GGR+ EI R++GR+LR+ +DLSALG I +DCDV+QA
Sbjct: 68 EYAMLPAATHERSGRESVRGKVGGRTHEISRLVGRSLRACIDLSALGENTIALDCDVLQA 127
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
DGGTRTAAITGA+VAL D + ++ L G VAA+S G++ G+ + DL Y E
Sbjct: 128 DGGTRTAAITGAYVALADAITWLQSS--GAVTGNPLTGAVAAVSVGVVDGHVLCDLPYEE 185
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
DS +VD N V TD G ++EVQG+AE A F +D AML+ A+ L LQ++ ++
Sbjct: 186 DSRAEVDMNVVCTDGGKLIEVQGTAEGAAFGRDVLDAMLDSAQAGCERLFALQREALA 243
>gi|205374390|ref|ZP_03227188.1| ribonuclease PH [Bacillus coahuilensis m4-4]
Length = 247
Score = 168 bits (426), Expect = 4e-40, Method: Composition-based stats.
Identities = 104/240 (43%), Positives = 147/240 (61%), Gaps = 1/240 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR + R+ +++R +++ + EGS L+ G T ++ TA++EE+VP ++R GW+
Sbjct: 1 MRRNERKVDELRPVTIETDYLIHPEGSVLISIGQTKVICTASVEERVPPFMRGEGKGWVN 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEY MLPR+T R RE+ G+ GR+ EIQR+I R+LR+VVDL+ALG R I IDCDVIQ
Sbjct: 61 AEYSMLPRATEKRTIRESSKGKVTGRTMEIQRLISRSLRAVVDLTALGERTIWIDCDVIQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+ITGA++A+ + + K V A I+DL Y
Sbjct: 121 ADGGTRTASITGAFIAMTIAIDKISKEK-KLPRFPVNDFLSAISVGIDREKTVILDLSYD 179
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
EDST VD N VMT SG VEVQG+ E ATF+ +L++A+ +L+K QK+ +
Sbjct: 180 EDSTARVDMNVVMTGSGEFVEVQGTGEEATFTMSELQQLLSVAEKGNRELMKFQKEALGE 239
>gi|257452055|ref|ZP_05617354.1| ribonuclease PH [Fusobacterium sp. 3_1_5R]
gi|317058603|ref|ZP_07923088.1| ribonuclease Ph [Fusobacterium sp. 3_1_5R]
gi|313684279|gb|EFS21114.1| ribonuclease Ph [Fusobacterium sp. 3_1_5R]
Length = 249
Score = 168 bits (426), Expect = 4e-40, Method: Composition-based stats.
Identities = 113/240 (47%), Positives = 161/240 (67%), Gaps = 2/240 (0%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R+ GR+ENQ+REI +TR + +AEGS L++ G+T ++ TA++ EKVP +I+NT GW+TA
Sbjct: 3 RIDGRKENQLREIKITRDFNIHAEGSVLIESGNTKVICTASVSEKVPSFIKNTGKGWLTA 62
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
EY M+PR+TG R +REA G+ GR+ EIQR+IGRALRS +DL LG R I +DCDVIQA
Sbjct: 63 EYSMIPRATGERNQREAAKGKLSGRTMEIQRLIGRALRSSIDLEKLGERTITLDCDVIQA 122
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
DGGTRTA+ITGA+VA+ + + VAA+S G G +DL+Y E
Sbjct: 123 DGGTRTASITGAFVAMAIAAAKLLRE--GTITDSPVLSSVAAVSVGKCEGNIFLDLNYVE 180
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
DS+ +VD N + D G +EVQG+ E ATF + +L++A+ I L++ Q++V+ +
Sbjct: 181 DSSAEVDMNVIQNDLGEYIEVQGTGEEATFCRKELNTLLDMAEIGIHQLLEKQREVLGED 240
>gi|304413132|ref|ZP_07394605.1| ribonuclease PH [Candidatus Regiella insecticola LSR1]
gi|304283975|gb|EFL92368.1| ribonuclease PH [Candidatus Regiella insecticola LSR1]
Length = 242
Score = 168 bits (426), Expect = 4e-40, Method: Composition-based stats.
Identities = 120/239 (50%), Positives = 160/239 (66%), Gaps = 2/239 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MRL+GR Q+R ++LTR +KYAEGS LV+FGDT +L TAT+EE +P +++ GWIT
Sbjct: 1 MRLAGRAAEQVRPLTLTRHYTKYAEGSVLVEFGDTKVLCTATIEEGIPRFLKGKGQGWIT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPRST +R REA G+QGGR+ EIQR+I R+LR+ VDL LG I IDCDV+Q
Sbjct: 61 AEYGMLPRSTHSRNAREAAKGKQGGRTLEIQRLIARSLRAAVDLQQLGEHTITIDCDVLQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTAAI+GA VAL D L+ K ++G VAAIS G++ + DL+Y
Sbjct: 121 ADGGTRTAAISGASVALADALEKAV--IKKKLKKNPMRGLVAAISVGIVKNEALGDLEYT 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
ED+ + D N VM + ++EVQG+AE FS + +L LA+ I + + QK ++
Sbjct: 179 EDANAETDMNVVMMEDYQMIEVQGTAEGKPFSHEQLLTLLALARGGIGTIFQAQKAALA 237
>gi|293569789|ref|ZP_06680876.1| ribonuclease PH/Ham1 protein [Enterococcus faecium E1071]
gi|291587537|gb|EFF19414.1| ribonuclease PH/Ham1 protein [Enterococcus faecium E1071]
Length = 451
Score = 168 bits (426), Expect = 4e-40, Method: Composition-based stats.
Identities = 119/239 (49%), Positives = 161/239 (67%), Gaps = 3/239 (1%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR GR+ ++R++ L V KY EGS +++FGDT ++ +AT+E+ VP ++R T GW+T
Sbjct: 1 MRHDGRKAQELRKLELQTNVFKYPEGSVVIRFGDTTVICSATIEDSVPPFLRETGTGWVT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
A+Y MLPR+T R +RE+ G+ GR+ EIQR+IGR+LR+VVDL +G R II+DCDVIQ
Sbjct: 61 AKYSMLPRATSTRNRRESSKGKLSGRTMEIQRLIGRSLRAVVDLEKIGERSIIVDCDVIQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIV-DLDY 179
ADGGTRTA+ITGA+VAL ++ + K +K H+AA+S G+L V DLDY
Sbjct: 121 ADGGTRTASITGAFVALKLAIEKLLRE--KELSEDPIKEHLAAVSVGILPDGTCVTDLDY 178
Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
EDS VD N VMT+SG VE+QG+ E ATF + ML K+ I DLIK QK +
Sbjct: 179 QEDSAALVDMNLVMTESGKFVEIQGTGEEATFDGEQLNEMLFFGKNAIEDLIKEQKHAL 237
>gi|288921256|ref|ZP_06415540.1| ribonuclease PH [Frankia sp. EUN1f]
gi|288347346|gb|EFC81639.1| ribonuclease PH [Frankia sp. EUN1f]
Length = 256
Score = 168 bits (426), Expect = 4e-40, Method: Composition-based stats.
Identities = 110/240 (45%), Positives = 151/240 (62%), Gaps = 7/240 (2%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+R+ GR+ +Q+R+I++ R ++AEGS L+ G T +L A++ E VP W + + GW+T
Sbjct: 2 IRVDGRKTDQLRDITIVRGWQEHAEGSALISAGLTRVLCAASVTEGVPRWRKGSGLGWVT 61
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEY MLPR+T R RE+V GR GGR+ EI R+IGR+LR+ +DL ALG I IDCDV+
Sbjct: 62 AEYSMLPRATHTRNDRESVRGRIGGRTHEISRLIGRSLRAAIDLKALGENTIAIDCDVLL 121
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTAAITGA+VAL D + + S V A+S G++ G P++DL Y
Sbjct: 122 ADGGTRTAAITGAYVALADACRWLGRPSAIVTS-------VCAVSVGIVKGVPMLDLAYT 174
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
EDST D D N V T +G VEVQG+AE F + +LNLA L ++Q ++
Sbjct: 175 EDSTADTDMNVVCTGTGGFVEVQGTAEGTPFDRAALDELLNLATAGCNRLTEIQNAALAQ 234
>gi|158335996|ref|YP_001517170.1| ribonuclease PH [Acaryochloris marina MBIC11017]
gi|189043752|sp|B0CAB9|RNPH_ACAM1 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|158306237|gb|ABW27854.1| ribonuclease PH [Acaryochloris marina MBIC11017]
Length = 239
Score = 168 bits (426), Expect = 4e-40, Method: Composition-based stats.
Identities = 101/239 (42%), Positives = 147/239 (61%), Gaps = 4/239 (1%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R GRQ +Q+R I R + +A GS L + G T +L T +++ VP ++ +T GW+TA
Sbjct: 5 RPDGRQPDQLRPIRFHREYTHFAAGSVLAECGQTKVLCTVSVQPGVPRFLEDTGQGWLTA 64
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
EY MLP ST R +R + GR+QEIQR+IGR+LR+ +DL ALG R +++D DV+QA
Sbjct: 65 EYRMLPGSTPERQRR--ELMKLSGRTQEIQRLIGRSLRAALDLQALGERTLVVDADVLQA 122
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
D GTRT +ITG +VAL D + + ++ HVAA+S G+L G P +DL+Y E
Sbjct: 123 DAGTRTTSITGGFVALVDAVNQLVSK--GEIPQSPIRHHVAAVSVGLLEGQPFLDLNYPE 180
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
D VD N V T+ ++EVQG+AE T + ML+LA+ I LI+ Q+ +++
Sbjct: 181 DVGAAVDLNVVATEQLELLEVQGTAEEGTLPRPQLNQMLDLAEIGIQQLIEAQRQALAS 239
>gi|215488923|ref|YP_002331354.1| ribonuclease PH [Escherichia coli O127:H6 str. E2348/69]
gi|254808587|sp|B7UM50|RNPH_ECO27 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|215266995|emb|CAS11440.1| ribonuclease PH [Escherichia coli O127:H6 str. E2348/69]
gi|323965909|gb|EGB61357.1| ribonuclease PH [Escherichia coli M863]
gi|323975137|gb|EGB70242.1| ribonuclease PH [Escherichia coli TW10509]
gi|327250769|gb|EGE62471.1| ribonuclease PH [Escherichia coli STEC_7v]
Length = 238
Score = 168 bits (426), Expect = 5e-40, Method: Composition-based stats.
Identities = 124/240 (51%), Positives = 165/240 (68%), Gaps = 2/240 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR +GR NQ+R ++LTR +K+AEGS LV+FGDT +L TA++EE VP +++ GWIT
Sbjct: 1 MRPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWIT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPRST R REA G+QGGR+ EIQR+I RALR+ VDL ALG I +DCDV+Q
Sbjct: 61 AEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+ITGA VAL D L + + + +KG VAA+S G++ G + DL+Y
Sbjct: 121 ADGGTRTASITGACVALADALNKLVEN--GKLKTNPMKGMVAAVSVGIVNGEAVCDLEYV 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
EDS + D N VMT+ G I+EVQG+AE F+ + +L LA+ I ++ QK ++N
Sbjct: 179 EDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLTLLALARGGIESIVATQKAALAN 238
>gi|89900419|ref|YP_522890.1| ribonuclease PH [Rhodoferax ferrireducens T118]
gi|89345156|gb|ABD69359.1| RNAse PH [Rhodoferax ferrireducens T118]
Length = 243
Score = 168 bits (426), Expect = 5e-40, Method: Composition-based stats.
Identities = 126/241 (52%), Positives = 169/241 (70%), Gaps = 2/241 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+R+ R NQ+R + + R + +AEGS L++FG+T +L TA++EEKVP + + GW+T
Sbjct: 5 LRVGARAANQLRAVKIQRGYTMHAEGSVLIEFGNTKVLCTASVEEKVPAHKKGSGQGWVT 64
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPR+T +R +REA G+Q GR+QEIQR+IGRALRSV DLS LG R I +DCDV+Q
Sbjct: 65 AEYGMLPRATHSRNEREAARGKQSGRTQEIQRLIGRALRSVFDLSLLGERTIHLDCDVLQ 124
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTAAITGA+VA D + + ++ HVAAIS G++ G P++DL+Y
Sbjct: 125 ADGGTRTAAITGAFVAAQDAVTQLLMQGKLQLS--PIRDHVAAISVGIVDGTPLLDLEYT 182
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
EDS D D N VMT +G VEVQG+AE A FS+ A+L LA+ I+DL+ LQK + N
Sbjct: 183 EDSACDTDMNVVMTGAGQFVEVQGTAEGAAFSRREMDALLALAEQGISDLVALQKISLLN 242
Query: 241 E 241
+
Sbjct: 243 K 243
>gi|227551340|ref|ZP_03981389.1| tRNA nucleotidyltransferase [Enterococcus faecium TX1330]
gi|257887545|ref|ZP_05667198.1| ribonuclease PH/Ham1 [Enterococcus faecium 1,141,733]
gi|257896040|ref|ZP_05675693.1| ribonuclease PH/Ham1 [Enterococcus faecium Com12]
gi|257898668|ref|ZP_05678321.1| ribonuclease PH/Ham1 [Enterococcus faecium Com15]
gi|293378788|ref|ZP_06624945.1| tRNA nucleotidyltransferase [Enterococcus faecium PC4.1]
gi|227179551|gb|EEI60523.1| tRNA nucleotidyltransferase [Enterococcus faecium TX1330]
gi|257823599|gb|EEV50531.1| ribonuclease PH/Ham1 [Enterococcus faecium 1,141,733]
gi|257832605|gb|EEV59026.1| ribonuclease PH/Ham1 [Enterococcus faecium Com12]
gi|257836580|gb|EEV61654.1| ribonuclease PH/Ham1 [Enterococcus faecium Com15]
gi|292642581|gb|EFF60734.1| tRNA nucleotidyltransferase [Enterococcus faecium PC4.1]
Length = 451
Score = 168 bits (426), Expect = 5e-40, Method: Composition-based stats.
Identities = 121/239 (50%), Positives = 161/239 (67%), Gaps = 3/239 (1%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR GR+ ++R++ L V KY EGS +++FGDT ++ +AT+E+ VP ++R T GW+T
Sbjct: 1 MRHDGRKAQELRKLELQTNVFKYPEGSVVIRFGDTTVICSATVEDSVPPFLRETGTGWVT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEY MLPR+T R +RE+ G+ GR+ EIQR+IGR+LR+V+DL LG R IIIDCDVIQ
Sbjct: 61 AEYSMLPRATSTRNRRESSKGKLSGRTMEIQRLIGRSLRAVIDLEKLGERSIIIDCDVIQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIV-DLDY 179
ADGGTRTA+ITGA+VAL ++ + K +K H+AA+S G+L V DLDY
Sbjct: 121 ADGGTRTASITGAFVALRLAIEKLLRE--KELSEDPIKEHLAAVSVGILPDGTCVTDLDY 178
Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
EDS VD N VMT+SG VE+QG+ E ATF + ML K+ I DLIK QK +
Sbjct: 179 QEDSAALVDMNLVMTESGKFVEIQGTGEEATFDGEQLNEMLFFGKNAIEDLIKEQKHAL 237
>gi|332529685|ref|ZP_08405639.1| ribonuclease ph [Hylemonella gracilis ATCC 19624]
gi|332040706|gb|EGI77078.1| ribonuclease ph [Hylemonella gracilis ATCC 19624]
Length = 254
Score = 168 bits (426), Expect = 5e-40, Method: Composition-based stats.
Identities = 119/243 (48%), Positives = 161/243 (66%), Gaps = 6/243 (2%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+R R +Q+R + +TR + +AEGS L++FG T +L TA++EE+VP + + GW+T
Sbjct: 13 LRADQRAADQLRAVRITRHYTVHAEGSVLIEFGRTRVLCTASVEERVPPHKKGSGEGWVT 72
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPRST R REA G+Q GR+QEIQR+IGR+LR+V DL ALG R I +DCDV+Q
Sbjct: 73 AEYGMLPRSTHTRSDREAARGKQNGRTQEIQRLIGRSLRAVFDLKALGERTITLDCDVLQ 132
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTAAITGAWVA D + + + VAA+S G++ G ++DL+Y
Sbjct: 133 ADGGTRTAAITGAWVAAQDAVNTLIAQGKLTTSPII--APVAAVSVGIVEGQALLDLEYT 190
Query: 181 EDSTIDVDANFVMT----DSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
EDS D D N VMT GH +EVQG+AE A FS+ A+L LA+ I +L+ LQ+
Sbjct: 191 EDSACDTDMNVVMTVNAAGEGHYIEVQGTAEGAAFSRKEMDALLALAEKGIHELVALQRQ 250
Query: 237 VIS 239
++
Sbjct: 251 ALA 253
>gi|332686498|ref|YP_004456272.1| ribonuclease PH [Melissococcus plutonius ATCC 35311]
gi|332370507|dbj|BAK21463.1| ribonuclease PH [Melissococcus plutonius ATCC 35311]
Length = 453
Score = 168 bits (426), Expect = 5e-40, Method: Composition-based stats.
Identities = 114/239 (47%), Positives = 161/239 (67%), Gaps = 3/239 (1%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+R GR E Q+R I++ V KY EGS ++ FGDT ++ +AT+EEKVP ++++++ GW+T
Sbjct: 2 IRNDGRGEQQLRSITIETNVFKYPEGSVVISFGDTKVICSATIEEKVPFFLKDSEKGWVT 61
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEY MLPR+T R +R++ G+ GR+ EIQR+I R+LR+VVDL L + IIIDCDVIQ
Sbjct: 62 AEYSMLPRATQRRNRRDSNKGKLNGRATEIQRLISRSLRAVVDLEKLTGKSIIIDCDVIQ 121
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIV-DLDY 179
ADGGTRTA+ITGA+VAL ++ + +K ++AA+S GML + DL+Y
Sbjct: 122 ADGGTRTASITGAFVALKLAVEKL--LQQGLLTENPIKEYLAAVSVGMLSNDNCITDLNY 179
Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
ED+ VD N VMT++G+ VE+QG+ E ATFS + ML K I +LI +QK I
Sbjct: 180 EEDTAAKVDMNLVMTETGNFVEIQGTGEEATFSGEELNTMLFYGKQAIEELISIQKQAI 238
>gi|293572585|ref|ZP_06683559.1| ribonuclease PH/Ham1 protein [Enterococcus faecium E980]
gi|291607368|gb|EFF36716.1| ribonuclease PH/Ham1 protein [Enterococcus faecium E980]
Length = 451
Score = 168 bits (426), Expect = 5e-40, Method: Composition-based stats.
Identities = 121/239 (50%), Positives = 161/239 (67%), Gaps = 3/239 (1%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR GR+ ++R++ L V KY EGS +++FGDT ++ +AT+E+ VP ++R T GW+T
Sbjct: 1 MRHDGRKAQELRKLELQTNVFKYPEGSVVIRFGDTTVICSATVEDSVPPFLRETGTGWVT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEY MLPR+T R +RE+ G+ GR+ EIQR+IGR+LR+V+DL LG R IIIDCDVIQ
Sbjct: 61 AEYSMLPRATSTRNRRESNKGKLSGRTMEIQRLIGRSLRAVIDLEKLGERSIIIDCDVIQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIV-DLDY 179
ADGGTRTA+ITGA+VAL ++ + K +K H+AA+S G+L V DLDY
Sbjct: 121 ADGGTRTASITGAFVALRLAIEKLLRE--KELSEDPIKEHLAAVSVGILPDGTCVTDLDY 178
Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
EDS VD N VMT+SG VE+QG+ E ATF + ML K+ I DLIK QK +
Sbjct: 179 QEDSAALVDMNLVMTESGKFVEIQGTGEEATFDGEQLNEMLFFGKNAIEDLIKEQKHAL 237
>gi|332295803|ref|YP_004437726.1| Ribonuclease PH [Thermodesulfobium narugense DSM 14796]
gi|332178906|gb|AEE14595.1| Ribonuclease PH [Thermodesulfobium narugense DSM 14796]
Length = 241
Score = 168 bits (426), Expect = 5e-40, Method: Composition-based stats.
Identities = 103/240 (42%), Positives = 157/240 (65%), Gaps = 3/240 (1%)
Query: 1 MRLSG-RQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWI 59
MRL R+ +++R I + + Y EGS L+ FG+T ++ A++E+KVP +++ + GWI
Sbjct: 1 MRLDKSRKNDELRHIEIIKDFLIYPEGSVLISFGNTKVICNASVEDKVPPFLKGSGSGWI 60
Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119
T+EY M+PR+T +R RE+ SG+ GR+QEIQR+IGR+LRS VDLS LG R I ID +VI
Sbjct: 61 TSEYSMIPRATQDRNVRESTSGKISGRNQEIQRIIGRSLRSAVDLSLLGERTIYIDAEVI 120
Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179
QAD GTR A+ITG +VAL L+ +++ + LK +VAA+S +L I+D ++
Sbjct: 121 QADAGTRCASITGGFVALVLALRKLKE--YGLIKTSPLKYYVAAVSVAVLNDEVILDPNF 178
Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
ED DVD N + ++ I+E+QG+AE+ FS++ +L +A I +I +QK V+
Sbjct: 179 EEDVIADVDLNIIANENREIIEIQGTAEKKPFSKEKLNEILYIAYSGIEKIIAIQKKVLK 238
>gi|170766572|ref|ZP_02901025.1| ribonuclease PH [Escherichia albertii TW07627]
gi|170124010|gb|EDS92941.1| ribonuclease PH [Escherichia albertii TW07627]
Length = 238
Score = 168 bits (426), Expect = 5e-40, Method: Composition-based stats.
Identities = 125/240 (52%), Positives = 165/240 (68%), Gaps = 2/240 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR +GR NQ+R ++LTR +K+AEGS LV+FGDT +L TA++EE VP +++ GWIT
Sbjct: 1 MRPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWIT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPRST R REA G+QGGR+ EIQR+I RALR+ VDL ALG I +DCDV+Q
Sbjct: 61 AEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+ITGA VAL D L + + + +KG VAA+S G++ G I DL+Y
Sbjct: 121 ADGGTRTASITGACVALADALNKLVEN--GKLKTNPMKGMVAAVSVGIVNGEAICDLEYV 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
EDS + D N VMT+ G I+EVQG+AE F+ + +L LA+ I ++ QK ++N
Sbjct: 179 EDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLTLLALARGGIESIVATQKAALAN 238
>gi|82523945|emb|CAI78667.1| ribonuclease PH [uncultured delta proteobacterium]
Length = 242
Score = 168 bits (426), Expect = 5e-40, Method: Composition-based stats.
Identities = 113/239 (47%), Positives = 159/239 (66%), Gaps = 2/239 (0%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R +GR+ N++R I++T K GS LV+FG+T ++ ATLE+K +++NT GW+TA
Sbjct: 4 RSAGRKYNELRPINITNNFLKTTAGSALVEFGNTKVICAATLEDKSAPFLKNTGRGWVTA 63
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
EY MLP ST R RE+ G+ GGR+ EIQR+IGR+LR+V DL++ G + I +DCDVIQA
Sbjct: 64 EYSMLPASTQTRTPRESTRGKVGGRTHEIQRLIGRSLRAVCDLNSFGEKTIYMDCDVIQA 123
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
DGGTRTA+ITG ++AL + L+ M+ + +V+AIS G++ ++DL+Y E
Sbjct: 124 DGGTRTASITGGFIALVELLKKMKAD--GIVKEIPVNDYVSAISVGIIENKILLDLEYEE 181
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
DS DVD NFVMT SG +EVQG+AE F ++ M LA I +LI LQK ++ N
Sbjct: 182 DSKADVDMNFVMTGSGKFIEVQGTAEHVPFDKNQMHEMTTLAGQGIEELIALQKKIVGN 240
>gi|310817156|ref|YP_003965120.1| ribonuclease PH [Ketogulonicigenium vulgare Y25]
gi|308755891|gb|ADO43820.1| ribonuclease PH [Ketogulonicigenium vulgare Y25]
Length = 235
Score = 168 bits (426), Expect = 5e-40, Method: Composition-based stats.
Identities = 123/239 (51%), Positives = 164/239 (68%), Gaps = 4/239 (1%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR SGR+ ++MR++++ VS++AEGSCL+K GDTH+L TA+L+ +VP +++N+ GW+T
Sbjct: 1 MRPSGRKPDEMRKVTIETGVSRHAEGSCLIKMGDTHVLCTASLDARVPPFLKNSGLGWVT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPR+T +R+KR Q GR+QEIQR++GRALR+ VD ALG RQI IDCDVIQ
Sbjct: 61 AEYGMLPRATHSRMKR-EAKDGQSGRTQEIQRLVGRALRAGVDRVALGERQITIDCDVIQ 119
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTR AAITG WVAL + + +S L V+AISCG+ G ++DLDY
Sbjct: 120 ADGGTRCAAITGGWVALRLAVNKLLKA--GVIISDPLSAPVSAISCGIYAGQALLDLDYP 177
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
EDS VD NF+MT +VE+Q SAE ATFS+ +L+LA A L Q + +
Sbjct: 178 EDSEAGVDGNFIMTAD-RLVEIQMSAEGATFSRAQMDTLLDLATQGNAWLAAAQLEAVK 235
>gi|33597539|ref|NP_885182.1| ribonuclease PH [Bordetella parapertussis 12822]
gi|61216028|sp|Q7W6C1|RNPH_BORPA RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|33573967|emb|CAE38285.1| ribonuclease PH [Bordetella parapertussis]
Length = 250
Score = 168 bits (426), Expect = 5e-40, Method: Composition-based stats.
Identities = 117/238 (49%), Positives = 160/238 (67%), Gaps = 2/238 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+R +GR + +R SL R ++YAEGS LV+ G+TH+L TA++ EKVP +++ GW+T
Sbjct: 14 VRPAGRAVDALRPFSLERGFTRYAEGSVLVRAGNTHVLCTASVLEKVPPFLKGRGEGWVT 73
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPR+T R REA G+Q GR+QEIQR+IGR+LR+V DL LG R + +DCDV+Q
Sbjct: 74 AEYGMLPRATHTRGDREAARGKQSGRTQEIQRLIGRSLRAVFDLRLLGERTLHLDCDVLQ 133
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTR A+ITGAWVA D + + ++ VAA+S G++ G ++DLDY
Sbjct: 134 ADGGTRCASITGAWVAAADAVALL--MQRGDLAHNPIRDAVAAVSVGLVDGRAVLDLDYQ 191
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
EDS D N VMT SG VEVQG+ E ATF++ ML LA+ IA L++ Q++ +
Sbjct: 192 EDSACAADVNVVMTGSGAFVEVQGTGEGATFTRGELDTMLGLAEGGIAQLVRAQREAL 249
>gi|317508770|ref|ZP_07966420.1| ribonuclease PH [Segniliparus rugosus ATCC BAA-974]
gi|316252933|gb|EFV12353.1| ribonuclease PH [Segniliparus rugosus ATCC BAA-974]
Length = 261
Score = 168 bits (425), Expect = 5e-40, Method: Composition-based stats.
Identities = 111/238 (46%), Positives = 155/238 (65%), Gaps = 1/238 (0%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
RL GR +++MR + +TR + GS LV+FG T + A++ E VP W + T GW+TA
Sbjct: 4 RLDGRHDDEMRPVKITRGFTGNPPGSVLVEFGQTRVFCAASVTEGVPRWRKGTGEGWLTA 63
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
EY MLP +T R RE+V G+ GGR+QEI R+IGR+LR+ +DL+ALG I +DCDV+QA
Sbjct: 64 EYAMLPAATATRNDRESVRGKLGGRTQEISRLIGRSLRACIDLAALGENTISVDCDVLQA 123
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
DGGTRTAAITGA+VAL D + + Q + +AA+S G++ G +DL Y E
Sbjct: 124 DGGTRTAAITGAFVALSDAVTWLAASGRLAD-PQPISCAIAAVSVGLVDGRVRLDLPYEE 182
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
DS +VD N V TD+G +VEVQG+AE ATF + +L+LA I L+ Q++ ++
Sbjct: 183 DSRAEVDMNVVATDTGTLVEVQGTAEGATFHRKTLDKLLDLAFAGIEQLVVAQREALA 240
>gi|499181|emb|CAA25357.1| unnamed protein product [Escherichia coli]
Length = 238
Score = 168 bits (425), Expect = 5e-40, Method: Composition-based stats.
Identities = 123/240 (51%), Positives = 164/240 (68%), Gaps = 2/240 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR +GR NQ+R ++LTR +K+AEGS LV+FGDT +L TA++EE VP +++ GWIT
Sbjct: 1 MRPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWIT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPRST R REA G+QGGR+ EIQR+I RALR+ VDL ALG I +DCDV+Q
Sbjct: 61 AEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
AD TRTA+ITGA VAL D LQ + + + +KG VAA+S G++ G + DL+Y
Sbjct: 121 ADAWTRTASITGACVALVDALQKLVEN--GKLKTNPMKGMVAAVSVGIVNGEAVCDLEYV 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
EDS + D N VMT+ G I+EVQG+AE F+ + +L LA+ I ++ QK ++N
Sbjct: 179 EDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLILLALARGGIESIVATQKAALAN 238
>gi|239618017|ref|YP_002941339.1| Polyribonucleotide nucleotidyltransferase [Kosmotoga olearia TBF
19.5.1]
gi|197321135|gb|ACH68639.1| polyribonucleotide nucleotidyltransferase [Kosmotoga olearia TBF
19.5.1]
gi|239506848|gb|ACR80335.1| Polyribonucleotide nucleotidyltransferase [Kosmotoga olearia TBF
19.5.1]
Length = 737
Score = 168 bits (425), Expect = 6e-40, Method: Composition-based stats.
Identities = 47/244 (19%), Positives = 89/244 (36%), Gaps = 18/244 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
+R+ GR+ ++R I+ + GS L G+T L T TL +E++ +
Sbjct: 323 LRMDGRKTTEIRPITCELDILPRTHGSALFTRGETQSLATVTLGAPIDEQIIDTLLEEGS 382
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P STG + R+ G RAL++++ I +
Sbjct: 383 KTFMLHYNFPPFSTGEVKRMRGPGRREIGHGHL----AERALKNMIPPEEEFPYTIRVVS 438
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
++++++G + A + +AL ++ + + + I
Sbjct: 439 EILESNGSSSMATVCSGSLALMAAGVPIKRHVAGVAMGLIQEPDETVILTD--------- 489
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T G I Q + A S++ L AK+ ++ L +
Sbjct: 490 ILGNEDHYGDMDFKVAGTRDG-ITAFQMDVKVAGVSEEIMLKALYQAKEARMKILDLMYE 548
Query: 237 VISN 240
IS
Sbjct: 549 TISE 552
Score = 102 bits (254), Expect = 4e-20, Method: Composition-based stats.
Identities = 45/234 (19%), Positives = 83/234 (35%), Gaps = 27/234 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHGWITAEYGML 66
R+I + ++K + G+C V+F D+ +L T E+ + G +
Sbjct: 14 RKIIVEHGKMAKQSHGACFVRFADSAILATVNASEEPLPQAGFVPLTVEFQEKFYAAGKI 73
Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
P R G+ + R+I R +R + Q+I+ D
Sbjct: 74 PGGFVKR------EGKPSENAILSARLIDRPIRPLFPKGMSNEVQVIVTVLSADPDNPPD 127
Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
T I + +AL+ G VA + G + G I E +
Sbjct: 128 TIGIFASSLALN-------------ISPIPFDGMVAGVRVGYVDGEYIFFPTSEELEKSE 174
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
+D T + V+G A+ S++ L A + I L++ Q++++S
Sbjct: 175 LDIVVAGTKE-AVTMVEGEAKE--VSEEVMLKALMKAHEAIKQLVEFQEEIVSE 225
>gi|293554040|ref|ZP_06674640.1| ribonuclease PH/Ham1 protein [Enterococcus faecium E1039]
gi|291601822|gb|EFF32074.1| ribonuclease PH/Ham1 protein [Enterococcus faecium E1039]
Length = 451
Score = 168 bits (425), Expect = 6e-40, Method: Composition-based stats.
Identities = 121/239 (50%), Positives = 161/239 (67%), Gaps = 3/239 (1%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR GR+ ++R++ L V KY EGS +++FGDT ++ +AT+E+ VP ++R T GW+T
Sbjct: 1 MRHDGRKAQELRKLELQTNVFKYPEGSVVIRFGDTTVICSATIEDSVPPFLRETGTGWVT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEY MLPR+T R +RE+ G+ GR+ EIQR+IGR+LR+VVDL LG R II+DCDVIQ
Sbjct: 61 AEYSMLPRATSTRNRRESSKGKLSGRTMEIQRLIGRSLRAVVDLEKLGERSIIVDCDVIQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIV-DLDY 179
ADGGTRTA+ITGA+VAL ++ + K +K H+AA+S G+L V DLDY
Sbjct: 121 ADGGTRTASITGAFVALKLAIEKLLRE--KELSEDPIKEHLAAVSVGILPDGTCVTDLDY 178
Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
EDS VD N VMT+SG VE+QG+ E ATF + ML K+ I DLIK QK +
Sbjct: 179 QEDSAALVDMNLVMTESGKFVEIQGTGEEATFDGEQLNEMLFFGKNAIEDLIKEQKHAL 237
>gi|325963801|ref|YP_004241707.1| RNAse PH [Arthrobacter phenanthrenivorans Sphe3]
gi|323469888|gb|ADX73573.1| RNAse PH [Arthrobacter phenanthrenivorans Sphe3]
Length = 252
Score = 168 bits (425), Expect = 6e-40, Method: Composition-based stats.
Identities = 113/242 (46%), Positives = 162/242 (66%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+R GR +Q+R IS+TR S AEGS L++FG+T +L TA+L VP W++ GW+T
Sbjct: 11 VRADGRAPDQLRPISITRGWSNQAEGSALIEFGNTRVLCTASLTAGVPRWLKGEGRGWVT 70
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEY MLPR+T R RE+V G+ GGR+ EI R+IGR+LRS++D ALG I++DCDV+Q
Sbjct: 71 AEYAMLPRATNTRSDRESVKGKIGGRTHEISRLIGRSLRSIIDTKALGENTIVLDCDVLQ 130
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTAAITGA+VAL D ++ D + +Q + +AA+S G++ G P++DL Y
Sbjct: 131 ADGGTRTAAITGAYVALADSIRFARDNQLIGKNAQPIIDTIAAVSVGIIDGVPMLDLPYV 190
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
ED + D N V+T SG VEVQG+AE A F + +L+LA + L +Q++ +++
Sbjct: 191 EDVRAETDMNVVVTGSGKFVEVQGTAEGAPFDRAELDQLLDLALLGTSQLAAIQRETLAD 250
Query: 241 EV 242
+
Sbjct: 251 TL 252
>gi|114564986|ref|YP_752500.1| ribonuclease PH [Shewanella frigidimarina NCIMB 400]
gi|122298386|sp|Q07WF3|RNPH_SHEFN RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|114336279|gb|ABI73661.1| RNAse PH [Shewanella frigidimarina NCIMB 400]
Length = 237
Score = 168 bits (425), Expect = 6e-40, Method: Composition-based stats.
Identities = 123/239 (51%), Positives = 161/239 (67%), Gaps = 2/239 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR S R Q R I++TR + +AEGS LV+FGDT +L TA+ E VP +++ GW+T
Sbjct: 1 MRPSNRTPAQTRPITITRSFTAHAEGSVLVEFGDTKVLCTASFTEGVPRFLKGQGQGWVT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPRST +R+ REA G+Q GR+QEIQR+IGRALR+ VD+ LG I+IDCDVIQ
Sbjct: 61 AEYGMLPRSTHSRMDREAARGKQSGRTQEIQRLIGRALRAAVDMKLLGENTIVIDCDVIQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTAAITGA VAL D L + LK +AA+S G+ G I DL+Y
Sbjct: 121 ADGGTRTAAITGACVALVDALNW--ARGKGIIKANPLKFLIAAVSVGIYKGEAISDLEYI 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
EDS + D N VMT++G I+E+QG+AE FS + +L LAK+ I +++ +QK +S
Sbjct: 179 EDSAAETDMNVVMTETGKIIEIQGTAEGEPFSHEELLELLVLAKNSIREIVDVQKAALS 237
>gi|291619462|ref|YP_003522204.1| Rph [Pantoea ananatis LMG 20103]
gi|291154492|gb|ADD79076.1| Rph [Pantoea ananatis LMG 20103]
gi|327395785|dbj|BAK13207.1| ribonuclease Rph [Pantoea ananatis AJ13355]
Length = 238
Score = 168 bits (425), Expect = 6e-40, Method: Composition-based stats.
Identities = 121/240 (50%), Positives = 165/240 (68%), Gaps = 2/240 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR +GR +Q+R ++LTR +K+AEGS LV+FG+T +L TAT++E VP +++ GW+T
Sbjct: 1 MRPAGRSAHQVRPVTLTRNYTKHAEGSVLVEFGETKVLCTATVDEGVPRFLKGQGQGWVT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPRST +R+ REA G+QGGR+ EIQR+I R+LR+ VDL LG I +DCDVIQ
Sbjct: 61 AEYGMLPRSTHSRMAREAAKGKQGGRTLEIQRLIARSLRAAVDLKVLGEYTITLDCDVIQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+ITGA VAL D L + + +KG VAA+S G++ G + DL+Y
Sbjct: 121 ADGGTRTASITGACVALADALNKLVAS--GKLKANPMKGMVAAVSVGIVNGEALCDLEYV 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
EDS + D N VM + G ++EVQG+AE FS + A+L LA+ I +LI+ QK +
Sbjct: 179 EDSAAETDMNVVMMEDGRMIEVQGTAEGEPFSHEELLALLALARGGIEELIQAQKAALEK 238
>gi|218556206|ref|YP_002389119.1| ribonuclease PH [Escherichia coli IAI1]
gi|218697364|ref|YP_002405031.1| ribonuclease PH [Escherichia coli 55989]
gi|254038843|ref|ZP_04872895.1| ribonuclease PH [Escherichia sp. 1_1_43]
gi|218354096|emb|CAV00651.1| ribonuclease PH [Escherichia coli 55989]
gi|218362974|emb|CAR00611.1| ribonuclease PH [Escherichia coli IAI1]
gi|226838808|gb|EEH70835.1| ribonuclease PH [Escherichia sp. 1_1_43]
Length = 246
Score = 168 bits (425), Expect = 6e-40, Method: Composition-based stats.
Identities = 126/240 (52%), Positives = 166/240 (69%), Gaps = 2/240 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR +GR NQ+R ++LTR +K+AEGS LV+FGDT +L TA++EE VP +++ GWIT
Sbjct: 9 MRPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWIT 68
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPRST R REA G+QGGR+ EIQR+I RALR+ VDL ALG I +DCDV+Q
Sbjct: 69 AEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQ 128
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+ITGA VAL D LQ + + + +KG VAA+S G++ G I DL+Y
Sbjct: 129 ADGGTRTASITGACVALADALQKLVEN--GKLKTNPMKGMVAAVSVGIVNGEAICDLEYV 186
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
EDS + D N VMT+ G I+EVQG+AE F+ + +L LA+ I ++ QK ++N
Sbjct: 187 EDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLTLLALARGGIESIVATQKAALAN 246
>gi|270265234|ref|ZP_06193496.1| ribonuclease PH [Serratia odorifera 4Rx13]
gi|270040868|gb|EFA13970.1| ribonuclease PH [Serratia odorifera 4Rx13]
Length = 238
Score = 168 bits (425), Expect = 6e-40, Method: Composition-based stats.
Identities = 121/240 (50%), Positives = 162/240 (67%), Gaps = 2/240 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR +GR Q+R ++LTR +K+AEGS LV+FGDT +L TAT+EE VP +++ GWIT
Sbjct: 1 MRPAGRAPQQVRPLTLTRHYTKHAEGSVLVEFGDTKVLCTATVEEGVPRFLKGQGQGWIT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPRST +R REA G+QGGR+ EIQR+I R+LR+ VDL LG I +DCDV+Q
Sbjct: 61 AEYGMLPRSTHSRNAREAAKGKQGGRTLEIQRLIARSLRAAVDLKKLGEFTITLDCDVLQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+I+GA VAL D L + + +KG VAA+S G++ G + DL+Y
Sbjct: 121 ADGGTRTASISGACVALADALNALVAA--GKLKANPMKGLVAAVSVGIVKGEALCDLEYV 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
EDS + D N VM + G ++EVQG+AE FS D A+L LA+ I + + QK ++
Sbjct: 179 EDSAAETDMNVVMMEDGRMIEVQGTAEGEPFSHDELLALLALARGGIETIFQAQKAALAE 238
>gi|254449788|ref|ZP_05063225.1| ribonuclease PH [Octadecabacter antarcticus 238]
gi|198264194|gb|EDY88464.1| ribonuclease PH [Octadecabacter antarcticus 238]
Length = 235
Score = 168 bits (425), Expect = 6e-40, Method: Composition-based stats.
Identities = 126/239 (52%), Positives = 168/239 (70%), Gaps = 4/239 (1%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR SGR+ ++MR IS+ V+++AEGSCL+K GDTH+L TA+++E+VP +++N+ GW+T
Sbjct: 1 MRPSGRKIDEMRSISIEVNVTRHAEGSCLIKCGDTHVLCTASIDERVPPFLKNSGLGWVT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPR+T R++R Q GR+QEIQR+IGR+LR+ VD ALG RQIIIDCDVIQ
Sbjct: 61 AEYGMLPRATNTRMRR-EAKNGQSGRTQEIQRLIGRSLRAGVDRVALGERQIIIDCDVIQ 119
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTR A+ITG WVAL +Q + +S L VAA+SCG+ G ++DLDY
Sbjct: 120 ADGGTRCASITGGWVALKLAVQKLMKA--GDVISDPLLIPVAAVSCGIYAGQSVLDLDYP 177
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
EDS VD NFVMT ++E+Q SAE +TFS+D AM++LA IA+L Q +
Sbjct: 178 EDSEAGVDGNFVMTGD-KLIEIQMSAEGSTFSRDQMNAMMDLADKGIAELTAAQIAAVG 235
>gi|332527984|ref|ZP_08404018.1| tRNA nucleotidyltransferase [Rubrivivax benzoatilyticus JA2]
gi|332112558|gb|EGJ12351.1| tRNA nucleotidyltransferase [Rubrivivax benzoatilyticus JA2]
Length = 241
Score = 168 bits (425), Expect = 6e-40, Method: Composition-based stats.
Identities = 121/229 (52%), Positives = 158/229 (68%), Gaps = 2/229 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+R SGR + +R +++TR +K+AEGS LV FGDT +L TA++EEKVP R + GW+T
Sbjct: 4 VRSSGRAHDALRPVTITRHYTKHAEGSVLVCFGDTQVLCTASVEEKVPPHKRGSGEGWVT 63
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPR+T R REA G+Q GR+QEIQR+IGR+LR+V DL ALG R I+IDCDV+Q
Sbjct: 64 AEYGMLPRATHTRGDREAARGKQSGRTQEIQRLIGRSLRTVFDLGALGERSILIDCDVLQ 123
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTAAITGA+VA D + + ++ VAAIS G++ G P++DL+Y
Sbjct: 124 ADGGTRTAAITGAFVAAQDAVNWLLAQGKIAAS--PIRDQVAAISVGIVQGTPLLDLEYI 181
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIAD 229
EDS D D N VMT SG VE+QG+AE F++ A+L LA I +
Sbjct: 182 EDSACDTDMNVVMTGSGGFVEIQGTAEGVPFTRAEMDALLALAGKGIGE 230
>gi|41408520|ref|NP_961356.1| ribonuclease PH [Mycobacterium avium subsp. paratuberculosis K-10]
gi|254774377|ref|ZP_05215893.1| ribonuclease PH [Mycobacterium avium subsp. avium ATCC 25291]
gi|61215988|sp|Q73X87|RNPH_MYCPA RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|41396876|gb|AAS04739.1| RphA [Mycobacterium avium subsp. paratuberculosis K-10]
Length = 259
Score = 168 bits (425), Expect = 6e-40, Method: Composition-based stats.
Identities = 106/238 (44%), Positives = 152/238 (63%), Gaps = 1/238 (0%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R GR ++++R + +TR +++ GS L++FG T ++ TA++ E VP W + + GW+TA
Sbjct: 4 REDGRLDDELRPLVITRGFTEHPAGSVLIEFGHTKVMCTASVTEGVPRWRKGSGLGWLTA 63
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
EY MLP +T R RE+V GR GR+QEI R+IGR+LR+ +DL+ALG I +DCDV+QA
Sbjct: 64 EYAMLPSATHTRSDRESVKGRLSGRTQEISRLIGRSLRACIDLAALGENTIAVDCDVLQA 123
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
DGGTRTAAITGA+VAL D + K + L +AA+S G++ G VDL Y E
Sbjct: 124 DGGTRTAAITGAFVALADA-VTYLSAAGKLSDPRPLSCAIAAVSVGVVDGRIRVDLPYEE 182
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
D+ +VD N V TD+G +VEVQG+ E ATF + +L+ A L Q++ +
Sbjct: 183 DARAEVDMNVVATDTGTLVEVQGTGEGATFPRSTLDKLLDAALAACDKLFAAQREALK 240
>gi|89895968|ref|YP_519455.1| hypothetical protein DSY3222 [Desulfitobacterium hafniense Y51]
gi|89335416|dbj|BAE85011.1| hypothetical protein [Desulfitobacterium hafniense Y51]
Length = 247
Score = 168 bits (425), Expect = 6e-40, Method: Composition-based stats.
Identities = 112/236 (47%), Positives = 151/236 (63%), Gaps = 2/236 (0%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R GR+ ++R + LTR + EGS L++ G T ++ TAT+EEKVP++ + T GW+TA
Sbjct: 3 RFDGREAFELRPVKLTRGFTNIPEGSVLIEVGQTRVICTATVEEKVPLFKKGTGSGWVTA 62
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
EY MLPR+T R RE+ G+ GR+ EIQR+IGRALRSVVDL LG R I +DCDVIQA
Sbjct: 63 EYSMLPRATQTRNHRESSKGKLTGRTMEIQRLIGRALRSVVDLKKLGERTIWLDCDVIQA 122
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
DGGTRTA+ITGA+VAL D + + + +AA+S G + G ++DL Y E
Sbjct: 123 DGGTRTASITGAYVALVDAVN--HLLAKGLIKENPILDSLAAVSVGKVDGMALLDLAYEE 180
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
DS +VD N VMT G VE+QG+AE F ++ L LA+ I +L+ +QK
Sbjct: 181 DSKAEVDMNVVMTGQGKFVEIQGTAEDIPFGREELDQFLELAEKGIQELMGMQKAA 236
>gi|257869443|ref|ZP_05649096.1| ribonuclease PH/Ham1 [Enterococcus gallinarum EG2]
gi|257803607|gb|EEV32429.1| ribonuclease PH/Ham1 [Enterococcus gallinarum EG2]
Length = 450
Score = 168 bits (425), Expect = 7e-40, Method: Composition-based stats.
Identities = 113/239 (47%), Positives = 155/239 (64%), Gaps = 3/239 (1%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR GR+ +R + + V K+ EGS ++ FGDT ++ +AT+E++VP ++R++ GW+T
Sbjct: 1 MRHDGRKAGSIRPVEIKTNVFKHPEGSVVISFGDTTVICSATIEDRVPPFLRDSGKGWVT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEY MLPR+T R +RE+ G+ GR+ EIQR+I R+LR+VVDL LG R I++DCDVIQ
Sbjct: 61 AEYSMLPRATNTRNRRESAKGKLSGRTMEIQRLIARSLRAVVDLEKLGERSIVVDCDVIQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIV-DLDY 179
ADGGTRTA+ITGA+VAL + + +K H+AAIS G+L V DLDY
Sbjct: 121 ADGGTRTASITGAFVALRLAIDQLLTNH--ELTEDPIKEHLAAISVGILPDNTCVTDLDY 178
Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
EDS VD N VMT+SG +E+QG+ E ATF ML K I +LI QK+ +
Sbjct: 179 EEDSAAAVDMNLVMTESGRFIEIQGTGEEATFDGQQLNEMLIYGKTAIEELIAYQKEAL 237
>gi|30065081|ref|NP_839252.1| ribonuclease PH [Shigella flexneri 2a str. 2457T]
gi|56480393|ref|NP_709422.2| ribonuclease PH [Shigella flexneri 2a str. 301]
gi|110807680|ref|YP_691200.1| ribonuclease PH [Shigella flexneri 5 str. 8401]
gi|157163124|ref|YP_001460442.1| ribonuclease PH [Escherichia coli HS]
gi|170018127|ref|YP_001723081.1| ribonuclease PH [Escherichia coli ATCC 8739]
gi|194435850|ref|ZP_03067953.1| ribonuclease PH [Escherichia coli 101-1]
gi|253771516|ref|YP_003034347.1| ribonuclease PH [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
gi|254163571|ref|YP_003046679.1| ribonuclease PH [Escherichia coli B str. REL606]
gi|260857962|ref|YP_003231853.1| ribonuclease PH [Escherichia coli O26:H11 str. 11368]
gi|260870373|ref|YP_003236775.1| ribonuclease PH [Escherichia coli O111:H- str. 11128]
gi|297518127|ref|ZP_06936513.1| ribonuclease PH [Escherichia coli OP50]
gi|300907685|ref|ZP_07125313.1| ribonuclease PH [Escherichia coli MS 84-1]
gi|300923429|ref|ZP_07139469.1| ribonuclease PH [Escherichia coli MS 182-1]
gi|300927927|ref|ZP_07143486.1| ribonuclease PH [Escherichia coli MS 187-1]
gi|301303877|ref|ZP_07209996.1| ribonuclease PH [Escherichia coli MS 124-1]
gi|301325325|ref|ZP_07218832.1| ribonuclease PH [Escherichia coli MS 78-1]
gi|312972072|ref|ZP_07786246.1| ribonuclease PH [Escherichia coli 1827-70]
gi|61216048|sp|Q83PN2|RNPH_SHIFL RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|123047760|sp|Q0SYH0|RNPH_SHIF8 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|166991084|sp|A8A6A5|RNPH_ECOHS RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|189043762|sp|B1IYV7|RNPH_ECOLC RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|30043342|gb|AAP19063.1| RNase PH [Shigella flexneri 2a str. 2457T]
gi|56383944|gb|AAN45129.2| RNase PH [Shigella flexneri 2a str. 301]
gi|110617228|gb|ABF05895.1| RNase PH [Shigella flexneri 5 str. 8401]
gi|157068804|gb|ABV08059.1| ribonuclease PH [Escherichia coli HS]
gi|169753055|gb|ACA75754.1| ribonuclease PH [Escherichia coli ATCC 8739]
gi|194425393|gb|EDX41377.1| ribonuclease PH [Escherichia coli 101-1]
gi|253322560|gb|ACT27162.1| ribonuclease PH [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
gi|253975472|gb|ACT41143.1| ribonuclease PH [Escherichia coli B str. REL606]
gi|253979628|gb|ACT45298.1| ribonuclease PH [Escherichia coli BL21(DE3)]
gi|257756611|dbj|BAI28113.1| ribonuclease PH [Escherichia coli O26:H11 str. 11368]
gi|257766729|dbj|BAI38224.1| ribonuclease PH [Escherichia coli O111:H- str. 11128]
gi|281603006|gb|ADA75990.1| Ribonuclease PH [Shigella flexneri 2002017]
gi|300400621|gb|EFJ84159.1| ribonuclease PH [Escherichia coli MS 84-1]
gi|300420256|gb|EFK03567.1| ribonuclease PH [Escherichia coli MS 182-1]
gi|300464019|gb|EFK27512.1| ribonuclease PH [Escherichia coli MS 187-1]
gi|300840840|gb|EFK68600.1| ribonuclease PH [Escherichia coli MS 124-1]
gi|300847852|gb|EFK75612.1| ribonuclease PH [Escherichia coli MS 78-1]
gi|309704045|emb|CBJ03391.1| ribonuclease PH [Escherichia coli ETEC H10407]
gi|310334449|gb|EFQ00654.1| ribonuclease PH [Escherichia coli 1827-70]
gi|313647483|gb|EFS11933.1| ribonuclease PH [Shigella flexneri 2a str. 2457T]
gi|313848787|emb|CAQ33969.2| rph [Escherichia coli BL21(DE3)]
gi|315254030|gb|EFU33998.1| ribonuclease PH [Escherichia coli MS 85-1]
gi|320201331|gb|EFW75912.1| Ribonuclease PH [Escherichia coli EC4100B]
gi|323155294|gb|EFZ41477.1| ribonuclease PH [Escherichia coli EPECa14]
gi|323173236|gb|EFZ58865.1| ribonuclease PH [Escherichia coli LT-68]
gi|323179387|gb|EFZ64954.1| ribonuclease PH [Escherichia coli 1180]
gi|323944096|gb|EGB40176.1| ribonuclease PH [Escherichia coli H120]
gi|323959891|gb|EGB55539.1| ribonuclease PH [Escherichia coli H489]
gi|323971285|gb|EGB66530.1| ribonuclease PH [Escherichia coli TA007]
gi|332750601|gb|EGJ81009.1| ribonuclease PH [Shigella flexneri 4343-70]
gi|332751354|gb|EGJ81757.1| ribonuclease PH [Shigella flexneri 2747-71]
gi|332764155|gb|EGJ94392.1| ribonuclease PH [Shigella flexneri 2930-71]
gi|332996132|gb|EGK15759.1| ribonuclease PH [Shigella flexneri VA-6]
gi|332997420|gb|EGK17036.1| ribonuclease PH [Shigella flexneri K-218]
gi|332997778|gb|EGK17389.1| ribonuclease PH [Shigella flexneri K-272]
gi|333012908|gb|EGK32285.1| ribonuclease PH [Shigella flexneri K-304]
gi|333013313|gb|EGK32685.1| ribonuclease PH [Shigella flexneri K-227]
Length = 238
Score = 168 bits (425), Expect = 7e-40, Method: Composition-based stats.
Identities = 126/240 (52%), Positives = 166/240 (69%), Gaps = 2/240 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR +GR NQ+R ++LTR +K+AEGS LV+FGDT +L TA++EE VP +++ GWIT
Sbjct: 1 MRPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWIT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPRST R REA G+QGGR+ EIQR+I RALR+ VDL ALG I +DCDV+Q
Sbjct: 61 AEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+ITGA VAL D LQ + + + +KG VAA+S G++ G I DL+Y
Sbjct: 121 ADGGTRTASITGACVALADALQKLVEN--GKLKTNPMKGMVAAVSVGIVNGEAICDLEYV 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
EDS + D N VMT+ G I+EVQG+AE F+ + +L LA+ I ++ QK ++N
Sbjct: 179 EDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLTLLALARGGIESIVATQKAALAN 238
>gi|94968644|ref|YP_590692.1| ribonuclease PH [Candidatus Koribacter versatilis Ellin345]
gi|94550694|gb|ABF40618.1| RNAse PH [Candidatus Koribacter versatilis Ellin345]
Length = 245
Score = 168 bits (425), Expect = 7e-40, Method: Composition-based stats.
Identities = 111/242 (45%), Positives = 156/242 (64%), Gaps = 2/242 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
R R +Q+R +S+ AEGSCL++ G+T ++ TA++EE VP ++RN+ GW+T
Sbjct: 3 FRSDNRTPDQLRPVSIIPDYISTAEGSCLIEVGNTRVICTASIEESVPSFLRNSGKGWLT 62
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
+EY MLPR+T R RE GR GR+ EIQR+IGR+LR+V DL+ LG R + +DCDVIQ
Sbjct: 63 SEYAMLPRATLTRTPREVSKGRASGRTHEIQRLIGRSLRAVTDLTKLGERTLFVDCDVIQ 122
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+ITGA+VA+ +Q + + L+ +VAA S G++ G ++DL Y
Sbjct: 123 ADGGTRTASITGAFVAVGLAVQKLTEAGTLSIS--PLRDYVAATSVGIVDGAVLLDLAYE 180
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
EDS +VD N VMT S +VE+QG+AE+ F + M++LAK I LI QK +
Sbjct: 181 EDSRAEVDMNIVMTGSRKMVEIQGTAEQHPFDDEQLAKMMSLAKAGIEQLIVKQKAALGT 240
Query: 241 EV 242
V
Sbjct: 241 TV 242
>gi|218551172|ref|YP_002384963.1| ribonuclease PH [Escherichia fergusonii ATCC 35469]
gi|218560715|ref|YP_002393628.1| ribonuclease PH [Escherichia coli S88]
gi|218691927|ref|YP_002400139.1| ribonuclease PH [Escherichia coli ED1a]
gi|218702410|ref|YP_002410039.1| ribonuclease PH [Escherichia coli IAI39]
gi|218707277|ref|YP_002414796.1| ribonuclease PH [Escherichia coli UMN026]
gi|26110719|gb|AAN82903.1|AE016769_18 Ribonuclease PH [Escherichia coli CFT073]
gi|91074734|gb|ABE09615.1| ribonuclease PH [Escherichia coli UTI89]
gi|218358713|emb|CAQ91369.1| ribonuclease PH [Escherichia fergusonii ATCC 35469]
gi|218367484|emb|CAR05266.1| ribonuclease PH [Escherichia coli S88]
gi|218372396|emb|CAR20270.1| ribonuclease PH [Escherichia coli IAI39]
gi|218429491|emb|CAR10314.1| ribonuclease PH [Escherichia coli ED1a]
gi|218434374|emb|CAR15299.1| ribonuclease PH [Escherichia coli UMN026]
Length = 246
Score = 168 bits (425), Expect = 7e-40, Method: Composition-based stats.
Identities = 125/240 (52%), Positives = 166/240 (69%), Gaps = 2/240 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR +GR NQ+R ++LTR +K+AEGS LV+FGDT +L TA++EE VP +++ GWIT
Sbjct: 9 MRPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWIT 68
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPRST R REA G+QGGR+ EIQR+I RALR+ VDL ALG I +DCDV+Q
Sbjct: 69 AEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQ 128
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+ITGA VAL D LQ + + + +KG VAA+S G++ G + DL+Y
Sbjct: 129 ADGGTRTASITGACVALADALQKLVEN--GKLKTNPMKGMVAAVSVGIVNGEAVCDLEYV 186
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
EDS + D N VMT+ G I+EVQG+AE F+ + +L LA+ I ++ QK ++N
Sbjct: 187 EDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLTLLALARGGIESIVATQKAALAN 246
>gi|15804184|ref|NP_290223.1| ribonuclease PH [Escherichia coli O157:H7 EDL933]
gi|15833772|ref|NP_312545.1| ribonuclease PH [Escherichia coli O157:H7 str. Sakai]
gi|74314123|ref|YP_312542.1| ribonuclease PH [Shigella sonnei Ss046]
gi|82546006|ref|YP_409953.1| ribonuclease PH [Shigella boydii Sb227]
gi|117625915|ref|YP_859238.1| ribonuclease PH [Escherichia coli APEC O1]
gi|157158506|ref|YP_001465123.1| ribonuclease PH [Escherichia coli E24377A]
gi|161486067|ref|NP_756329.2| ribonuclease PH [Escherichia coli CFT073]
gi|162138338|ref|YP_543146.2| ribonuclease PH [Escherichia coli UTI89]
gi|168748709|ref|ZP_02773731.1| ribonuclease PH [Escherichia coli O157:H7 str. EC4113]
gi|168753467|ref|ZP_02778474.1| ribonuclease PH [Escherichia coli O157:H7 str. EC4401]
gi|168759740|ref|ZP_02784747.1| ribonuclease PH [Escherichia coli O157:H7 str. EC4501]
gi|168766063|ref|ZP_02791070.1| ribonuclease PH [Escherichia coli O157:H7 str. EC4486]
gi|168772391|ref|ZP_02797398.1| ribonuclease PH [Escherichia coli O157:H7 str. EC4196]
gi|168779798|ref|ZP_02804805.1| ribonuclease PH [Escherichia coli O157:H7 str. EC4076]
gi|168785519|ref|ZP_02810526.1| ribonuclease PH [Escherichia coli O157:H7 str. EC869]
gi|168798588|ref|ZP_02823595.1| ribonuclease PH [Escherichia coli O157:H7 str. EC508]
gi|170680501|ref|YP_001745943.1| ribonuclease PH [Escherichia coli SMS-3-5]
gi|187733771|ref|YP_001882340.1| ribonuclease PH [Shigella boydii CDC 3083-94]
gi|191167816|ref|ZP_03029622.1| ribonuclease PH [Escherichia coli B7A]
gi|193063848|ref|ZP_03044935.1| ribonuclease PH [Escherichia coli E22]
gi|193070385|ref|ZP_03051327.1| ribonuclease PH [Escherichia coli E110019]
gi|194430060|ref|ZP_03062565.1| ribonuclease PH [Escherichia coli B171]
gi|194431006|ref|ZP_03063299.1| ribonuclease PH [Shigella dysenteriae 1012]
gi|195936204|ref|ZP_03081586.1| ribonuclease PH [Escherichia coli O157:H7 str. EC4024]
gi|208807479|ref|ZP_03249816.1| ribonuclease PH [Escherichia coli O157:H7 str. EC4206]
gi|208812475|ref|ZP_03253804.1| ribonuclease PH [Escherichia coli O157:H7 str. EC4045]
gi|208819811|ref|ZP_03260131.1| ribonuclease PH [Escherichia coli O157:H7 str. EC4042]
gi|209399306|ref|YP_002273121.1| ribonuclease PH [Escherichia coli O157:H7 str. EC4115]
gi|209921114|ref|YP_002295198.1| ribonuclease PH [Escherichia coli SE11]
gi|217324320|ref|ZP_03440404.1| ribonuclease PH [Escherichia coli O157:H7 str. TW14588]
gi|227883811|ref|ZP_04001616.1| ribonuclease PH [Escherichia coli 83972]
gi|237703414|ref|ZP_04533895.1| ribonuclease PH [Escherichia sp. 3_2_53FAA]
gi|254795598|ref|YP_003080435.1| ribonuclease PH [Escherichia coli O157:H7 str. TW14359]
gi|256021353|ref|ZP_05435218.1| ribonuclease PH [Shigella sp. D9]
gi|256025627|ref|ZP_05439492.1| ribonuclease PH [Escherichia sp. 4_1_40B]
gi|260846592|ref|YP_003224370.1| ribonuclease PH [Escherichia coli O103:H2 str. 12009]
gi|261224174|ref|ZP_05938455.1| ribonuclease PH [Escherichia coli O157:H7 str. FRIK2000]
gi|261254784|ref|ZP_05947317.1| ribonuclease PH [Escherichia coli O157:H7 str. FRIK966]
gi|291285014|ref|YP_003501832.1| Ribonuclease PH [Escherichia coli O55:H7 str. CB9615]
gi|293407266|ref|ZP_06651190.1| rph [Escherichia coli FVEC1412]
gi|293413077|ref|ZP_06655745.1| ribonuclease PH [Escherichia coli B354]
gi|293417104|ref|ZP_06659731.1| ribonuclease PH [Escherichia coli B185]
gi|293463967|ref|ZP_06664381.1| ribonuclease PH [Escherichia coli B088]
gi|298383012|ref|ZP_06992607.1| ribonuclease PH [Escherichia coli FVEC1302]
gi|300815118|ref|ZP_07095343.1| ribonuclease PH [Escherichia coli MS 107-1]
gi|300822413|ref|ZP_07102553.1| ribonuclease PH [Escherichia coli MS 119-7]
gi|300898578|ref|ZP_07116908.1| ribonuclease PH [Escherichia coli MS 198-1]
gi|300919790|ref|ZP_07136265.1| ribonuclease PH [Escherichia coli MS 115-1]
gi|300939243|ref|ZP_07153922.1| ribonuclease PH [Escherichia coli MS 21-1]
gi|300948023|ref|ZP_07162164.1| ribonuclease PH [Escherichia coli MS 116-1]
gi|300954463|ref|ZP_07166913.1| ribonuclease PH [Escherichia coli MS 175-1]
gi|300984904|ref|ZP_07177192.1| ribonuclease PH [Escherichia coli MS 45-1]
gi|301018972|ref|ZP_07183195.1| ribonuclease PH [Escherichia coli MS 69-1]
gi|301028402|ref|ZP_07191648.1| ribonuclease PH [Escherichia coli MS 196-1]
gi|301047433|ref|ZP_07194512.1| ribonuclease PH [Escherichia coli MS 185-1]
gi|301644309|ref|ZP_07244311.1| ribonuclease PH [Escherichia coli MS 146-1]
gi|307140341|ref|ZP_07499697.1| ribonuclease PH [Escherichia coli H736]
gi|307314272|ref|ZP_07593880.1| ribonuclease PH [Escherichia coli W]
gi|309797616|ref|ZP_07692004.1| ribonuclease PH [Escherichia coli MS 145-7]
gi|331644361|ref|ZP_08345490.1| tRNA nucleotidyltransferase [Escherichia coli H736]
gi|331649458|ref|ZP_08350544.1| tRNA nucleotidyltransferase [Escherichia coli M605]
gi|331655275|ref|ZP_08356274.1| tRNA nucleotidyltransferase [Escherichia coli M718]
gi|331659963|ref|ZP_08360901.1| tRNA nucleotidyltransferase [Escherichia coli TA206]
gi|331665268|ref|ZP_08366169.1| tRNA nucleotidyltransferase [Escherichia coli TA143]
gi|331670483|ref|ZP_08371322.1| tRNA nucleotidyltransferase [Escherichia coli TA271]
gi|331675122|ref|ZP_08375879.1| tRNA nucleotidyltransferase [Escherichia coli TA280]
gi|331679734|ref|ZP_08380404.1| tRNA nucleotidyltransferase [Escherichia coli H591]
gi|331685306|ref|ZP_08385892.1| tRNA nucleotidyltransferase [Escherichia coli H299]
gi|332282587|ref|ZP_08395000.1| ribonuclease PH [Shigella sp. D9]
gi|54039263|sp|P66680|RNPH_ECO57 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|54042177|sp|P66679|RNPH_ECOL6 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|123558299|sp|Q31UY3|RNPH_SHIBS RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|123615832|sp|Q3YW05|RNPH_SHISS RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|166228279|sp|A1AHH4|RNPH_ECOK1 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|166991083|sp|A7ZTJ4|RNPH_ECO24 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|226736905|sp|B5YWE1|RNPH_ECO5E RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|226736906|sp|B6I3M0|RNPH_ECOSE RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|226736907|sp|B1LK80|RNPH_ECOSM RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|226736941|sp|B2TTV7|RNPH_SHIB3 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|12518399|gb|AAG58787.1|AE005591_11 RNase PH [Escherichia coli O157:H7 str. EDL933]
gi|13363993|dbj|BAB37941.1| RNase PH [Escherichia coli O157:H7 str. Sakai]
gi|73857600|gb|AAZ90307.1| RNase PH [Shigella sonnei Ss046]
gi|81247417|gb|ABB68125.1| RNase PH [Shigella boydii Sb227]
gi|115515039|gb|ABJ03114.1| ribonuclease PH [Escherichia coli APEC O1]
gi|157080536|gb|ABV20244.1| ribonuclease PH [Escherichia coli E24377A]
gi|170518219|gb|ACB16397.1| ribonuclease PH [Escherichia coli SMS-3-5]
gi|187430763|gb|ACD10037.1| ribonuclease PH [Shigella boydii CDC 3083-94]
gi|187771578|gb|EDU35422.1| ribonuclease PH [Escherichia coli O157:H7 str. EC4196]
gi|188016889|gb|EDU55011.1| ribonuclease PH [Escherichia coli O157:H7 str. EC4113]
gi|189002636|gb|EDU71622.1| ribonuclease PH [Escherichia coli O157:H7 str. EC4076]
gi|189359228|gb|EDU77647.1| ribonuclease PH [Escherichia coli O157:H7 str. EC4401]
gi|189364689|gb|EDU83108.1| ribonuclease PH [Escherichia coli O157:H7 str. EC4486]
gi|189369513|gb|EDU87929.1| ribonuclease PH [Escherichia coli O157:H7 str. EC4501]
gi|189374286|gb|EDU92702.1| ribonuclease PH [Escherichia coli O157:H7 str. EC869]
gi|189378769|gb|EDU97185.1| ribonuclease PH [Escherichia coli O157:H7 str. EC508]
gi|190902159|gb|EDV61902.1| ribonuclease PH [Escherichia coli B7A]
gi|192930563|gb|EDV83170.1| ribonuclease PH [Escherichia coli E22]
gi|192956324|gb|EDV86785.1| ribonuclease PH [Escherichia coli E110019]
gi|194411887|gb|EDX28204.1| ribonuclease PH [Escherichia coli B171]
gi|194420461|gb|EDX36537.1| ribonuclease PH [Shigella dysenteriae 1012]
gi|208727280|gb|EDZ76881.1| ribonuclease PH [Escherichia coli O157:H7 str. EC4206]
gi|208733752|gb|EDZ82439.1| ribonuclease PH [Escherichia coli O157:H7 str. EC4045]
gi|208739934|gb|EDZ87616.1| ribonuclease PH [Escherichia coli O157:H7 str. EC4042]
gi|209160706|gb|ACI38139.1| ribonuclease PH [Escherichia coli O157:H7 str. EC4115]
gi|209754598|gb|ACI75606.1| RNase PH [Escherichia coli]
gi|209754600|gb|ACI75607.1| RNase PH [Escherichia coli]
gi|209754602|gb|ACI75608.1| RNase PH [Escherichia coli]
gi|209754604|gb|ACI75609.1| RNase PH [Escherichia coli]
gi|209754606|gb|ACI75610.1| RNase PH [Escherichia coli]
gi|209914373|dbj|BAG79447.1| ribonuclease PH [Escherichia coli SE11]
gi|217320541|gb|EEC28965.1| ribonuclease PH [Escherichia coli O157:H7 str. TW14588]
gi|222035351|emb|CAP78096.1| ribonuclease PH [Escherichia coli LF82]
gi|226902678|gb|EEH88937.1| ribonuclease PH [Escherichia sp. 3_2_53FAA]
gi|227839089|gb|EEJ49555.1| ribonuclease PH [Escherichia coli 83972]
gi|254594998|gb|ACT74359.1| ribonuclease PH [Escherichia coli O157:H7 str. TW14359]
gi|257761739|dbj|BAI33236.1| ribonuclease PH [Escherichia coli O103:H2 str. 12009]
gi|281180689|dbj|BAI57019.1| ribonuclease PH [Escherichia coli SE15]
gi|284923676|emb|CBG36773.1| ribonuclease PH [Escherichia coli 042]
gi|290764887|gb|ADD58848.1| Ribonuclease PH [Escherichia coli O55:H7 str. CB9615]
gi|291321599|gb|EFE61035.1| ribonuclease PH [Escherichia coli B088]
gi|291426077|gb|EFE99111.1| rph [Escherichia coli FVEC1412]
gi|291431135|gb|EFF04128.1| ribonuclease PH [Escherichia coli B185]
gi|291468724|gb|EFF11217.1| ribonuclease PH [Escherichia coli B354]
gi|294492761|gb|ADE91517.1| ribonuclease PH [Escherichia coli IHE3034]
gi|298276848|gb|EFI18366.1| ribonuclease PH [Escherichia coli FVEC1302]
gi|299878513|gb|EFI86724.1| ribonuclease PH [Escherichia coli MS 196-1]
gi|300300641|gb|EFJ57026.1| ribonuclease PH [Escherichia coli MS 185-1]
gi|300318542|gb|EFJ68326.1| ribonuclease PH [Escherichia coli MS 175-1]
gi|300357741|gb|EFJ73611.1| ribonuclease PH [Escherichia coli MS 198-1]
gi|300399466|gb|EFJ83004.1| ribonuclease PH [Escherichia coli MS 69-1]
gi|300408333|gb|EFJ91871.1| ribonuclease PH [Escherichia coli MS 45-1]
gi|300413143|gb|EFJ96453.1| ribonuclease PH [Escherichia coli MS 115-1]
gi|300452418|gb|EFK16038.1| ribonuclease PH [Escherichia coli MS 116-1]
gi|300455842|gb|EFK19335.1| ribonuclease PH [Escherichia coli MS 21-1]
gi|300525060|gb|EFK46129.1| ribonuclease PH [Escherichia coli MS 119-7]
gi|300532010|gb|EFK53072.1| ribonuclease PH [Escherichia coli MS 107-1]
gi|301077347|gb|EFK92153.1| ribonuclease PH [Escherichia coli MS 146-1]
gi|306906095|gb|EFN36614.1| ribonuclease PH [Escherichia coli W]
gi|307555742|gb|ADN48517.1| ribonuclease PH [Escherichia coli ABU 83972]
gi|307628716|gb|ADN73020.1| ribonuclease PH [Escherichia coli UM146]
gi|308118803|gb|EFO56065.1| ribonuclease PH [Escherichia coli MS 145-7]
gi|312948204|gb|ADR29031.1| ribonuclease PH [Escherichia coli O83:H1 str. NRG 857C]
gi|315062931|gb|ADT77258.1| ribonuclease PH [Escherichia coli W]
gi|315285457|gb|EFU44902.1| ribonuclease PH [Escherichia coli MS 110-3]
gi|315296969|gb|EFU56249.1| ribonuclease PH [Escherichia coli MS 16-3]
gi|315618654|gb|EFU99240.1| ribonuclease PH [Escherichia coli 3431]
gi|320176298|gb|EFW51358.1| Ribonuclease PH [Shigella dysenteriae CDC 74-1112]
gi|320179979|gb|EFW54921.1| Ribonuclease PH [Shigella boydii ATCC 9905]
gi|320186817|gb|EFW61537.1| Ribonuclease PH [Shigella flexneri CDC 796-83]
gi|320191306|gb|EFW65956.1| Ribonuclease PH [Escherichia coli O157:H7 str. EC1212]
gi|320193850|gb|EFW68483.1| Ribonuclease PH [Escherichia coli WV_060327]
gi|320639550|gb|EFX09158.1| ribonuclease PH [Escherichia coli O157:H7 str. G5101]
gi|320644989|gb|EFX14019.1| ribonuclease PH [Escherichia coli O157:H- str. 493-89]
gi|320650256|gb|EFX18745.1| ribonuclease PH [Escherichia coli O157:H- str. H 2687]
gi|320661342|gb|EFX28766.1| ribonuclease PH [Escherichia coli O55:H7 str. USDA 5905]
gi|320666356|gb|EFX33355.1| ribonuclease PH [Escherichia coli O157:H7 str. LSU-61]
gi|323160749|gb|EFZ46685.1| ribonuclease PH [Escherichia coli E128010]
gi|323166871|gb|EFZ52610.1| ribonuclease PH [Shigella sonnei 53G]
gi|323182671|gb|EFZ68074.1| ribonuclease PH [Escherichia coli 1357]
gi|323189449|gb|EFZ74730.1| ribonuclease PH [Escherichia coli RN587/1]
gi|323376476|gb|ADX48744.1| ribonuclease PH [Escherichia coli KO11]
gi|323934812|gb|EGB31194.1| ribonuclease PH [Escherichia coli E1520]
gi|323939598|gb|EGB35804.1| ribonuclease PH [Escherichia coli E482]
gi|323949882|gb|EGB45766.1| ribonuclease PH [Escherichia coli H252]
gi|323954817|gb|EGB50597.1| ribonuclease PH [Escherichia coli H263]
gi|324008099|gb|EGB77318.1| ribonuclease PH [Escherichia coli MS 57-2]
gi|324019680|gb|EGB88899.1| ribonuclease PH [Escherichia coli MS 117-3]
gi|324111538|gb|EGC05519.1| ribonuclease PH [Escherichia fergusonii B253]
gi|324116018|gb|EGC09944.1| ribonuclease PH [Escherichia coli E1167]
gi|326337358|gb|EGD61193.1| Ribonuclease PH [Escherichia coli O157:H7 str. 1044]
gi|326339883|gb|EGD63690.1| Ribonuclease PH [Escherichia coli O157:H7 str. 1125]
gi|330909705|gb|EGH38219.1| ribonuclease PH [Escherichia coli AA86]
gi|331036655|gb|EGI08881.1| tRNA nucleotidyltransferase [Escherichia coli H736]
gi|331041956|gb|EGI14100.1| tRNA nucleotidyltransferase [Escherichia coli M605]
gi|331047290|gb|EGI19368.1| tRNA nucleotidyltransferase [Escherichia coli M718]
gi|331053178|gb|EGI25211.1| tRNA nucleotidyltransferase [Escherichia coli TA206]
gi|331057778|gb|EGI29764.1| tRNA nucleotidyltransferase [Escherichia coli TA143]
gi|331062545|gb|EGI34465.1| tRNA nucleotidyltransferase [Escherichia coli TA271]
gi|331068031|gb|EGI39429.1| tRNA nucleotidyltransferase [Escherichia coli TA280]
gi|331072906|gb|EGI44231.1| tRNA nucleotidyltransferase [Escherichia coli H591]
gi|331077677|gb|EGI48889.1| tRNA nucleotidyltransferase [Escherichia coli H299]
gi|332084483|gb|EGI89678.1| ribonuclease PH [Shigella dysenteriae 155-74]
gi|332084823|gb|EGI90006.1| ribonuclease PH [Shigella boydii 5216-82]
gi|332089330|gb|EGI94434.1| ribonuclease PH [Shigella boydii 3594-74]
gi|332104939|gb|EGJ08285.1| ribonuclease PH [Shigella sp. D9]
Length = 238
Score = 168 bits (425), Expect = 7e-40, Method: Composition-based stats.
Identities = 125/240 (52%), Positives = 166/240 (69%), Gaps = 2/240 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR +GR NQ+R ++LTR +K+AEGS LV+FGDT +L TA++EE VP +++ GWIT
Sbjct: 1 MRPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWIT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPRST R REA G+QGGR+ EIQR+I RALR+ VDL ALG I +DCDV+Q
Sbjct: 61 AEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+ITGA VAL D LQ + + + +KG VAA+S G++ G + DL+Y
Sbjct: 121 ADGGTRTASITGACVALADALQKLVEN--GKLKTNPMKGMVAAVSVGIVNGEAVCDLEYV 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
EDS + D N VMT+ G I+EVQG+AE F+ + +L LA+ I ++ QK ++N
Sbjct: 179 EDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLTLLALARGGIESIVATQKAALAN 238
>gi|330813340|ref|YP_004357579.1| ribonuclease PH [Candidatus Pelagibacter sp. IMCC9063]
gi|327486435|gb|AEA80840.1| ribonuclease PH [Candidatus Pelagibacter sp. IMCC9063]
Length = 237
Score = 168 bits (425), Expect = 7e-40, Method: Composition-based stats.
Identities = 121/240 (50%), Positives = 168/240 (70%), Gaps = 3/240 (1%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR R+ ++R+I +T K A+ SCL+K GDTH++ TA++EEKVP W++ + GW+T
Sbjct: 1 MRND-RKNLELRKIEITTDFIKNADASCLIKSGDTHVVCTASIEEKVPRWLKGSGKGWVT 59
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPRST R++RE+ G+ GGR+ EIQR+IGR+LR+ ++L LG I IDCDV+Q
Sbjct: 60 AEYGMLPRSTHERMRRESSVGKVGGRTSEIQRLIGRSLRASMNLKLLGEYLITIDCDVLQ 119
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+ITG +VAL C+ M K +K +VAAISCG++ G ++DLDY
Sbjct: 120 ADGGTRTASITGGFVALKKCIDLMIKR--KQINHNPIKSYVAAISCGIVNGEFLMDLDYE 177
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
EDS DVD+N+VM D G I+E+Q + E+ T S++ F ML +K IA++I LQK +S
Sbjct: 178 EDSQADVDSNYVMNDKGDIIELQLTGEQTTCSEEEFMKMLRHSKSSIAEIITLQKKALSE 237
>gi|170749350|ref|YP_001755610.1| ribonuclease PH [Methylobacterium radiotolerans JCM 2831]
gi|226736917|sp|B1M4N1|RNPH_METRJ RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|170655872|gb|ACB24927.1| ribonuclease PH [Methylobacterium radiotolerans JCM 2831]
Length = 237
Score = 168 bits (425), Expect = 7e-40, Method: Composition-based stats.
Identities = 136/239 (56%), Positives = 172/239 (71%), Gaps = 2/239 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR S R +++R +SL R VS+YAEGSCLV FG+T +L TA+LEE+ P W+R + GW+T
Sbjct: 1 MRPSKRAADELRPVSLERAVSRYAEGSCLVSFGNTRVLCTASLEERAPPWLRGSGKGWVT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEY MLPR+T R +RE SG+ GR+QEIQR+IGR+LR+V +L A+G RQI IDCDVIQ
Sbjct: 61 AEYAMLPRATHERTRREVGSGKPSGRTQEIQRLIGRSLRAVTNLPAMGERQITIDCDVIQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTAAITGAWVALHDC M S L+ HVAA+SCG+ G P++DLDY
Sbjct: 121 ADGGTRTAAITGAWVALHDCFAWMRTRS--IISVDPLRDHVAAVSCGLYKGTPVLDLDYA 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
EDS + DANFV+T G IVEVQG+AE F+Q+ +L LA+ L+ LQK+ I+
Sbjct: 179 EDSAAETDANFVLTGRGGIVEVQGTAEMEPFTQEQLLELLGLARAGTERLVALQKEAIA 237
>gi|54023062|ref|YP_117304.1| ribonuclease PH [Nocardia farcinica IFM 10152]
gi|61215825|sp|Q5Z0V1|RNPH_NOCFA RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|54014570|dbj|BAD55940.1| putative RNase PH [Nocardia farcinica IFM 10152]
Length = 257
Score = 168 bits (425), Expect = 7e-40, Method: Composition-based stats.
Identities = 108/238 (45%), Positives = 156/238 (65%), Gaps = 1/238 (0%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R GR ++++RE+ +TR + + GS LV+FG T ++ TA++ E VP W R++ GW+TA
Sbjct: 4 RADGRADDELREVRITRGFTTHPAGSVLVEFGQTRVMCTASVTEGVPAWRRDSGLGWLTA 63
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
EY MLP +T R RE+V GR GGR+QEI R++GR+LR+ +DL+A+G I IDCDV+QA
Sbjct: 64 EYAMLPAATHTRSGRESVKGRVGGRTQEISRLVGRSLRACIDLAAIGENTIAIDCDVLQA 123
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
DGGTRTAAITGA+VAL D + + Q + +AA+S G++ G +DL Y E
Sbjct: 124 DGGTRTAAITGAYVALADAVTWLGAAGALAD-PQPISCAIAAVSVGVVDGRVRLDLPYEE 182
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
DS +VD N V TD+G +VE+QG+ E ATF + +L+ A L +QK+ ++
Sbjct: 183 DSRAEVDMNVVATDTGTLVEIQGTGEGATFPRSTLDKLLDAALAGCEQLFAVQKEALA 240
>gi|69246345|ref|ZP_00603901.1| Ribonuclease PH:Ham1-like protein [Enterococcus faecium DO]
gi|68195298|gb|EAN09749.1| Ribonuclease PH:Ham1-like protein [Enterococcus faecium DO]
Length = 451
Score = 168 bits (425), Expect = 7e-40, Method: Composition-based stats.
Identities = 121/239 (50%), Positives = 161/239 (67%), Gaps = 3/239 (1%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR GR+ ++R++ L V KY EGS +++FGDT ++ +AT+E+ VP ++R T GW+T
Sbjct: 1 MRHDGRKAQELRKLELQTNVFKYPEGSVVIRFGDTTVICSATIEDSVPPFLRETGTGWVT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEY MLPR+T R +RE+ G+ GR+ EIQR+IGR+LR+VVDL LG R II+DCDVIQ
Sbjct: 61 AEYSMLPRATSTRNRRESSKGKLSGRTMEIQRLIGRSLRAVVDLEKLGERSIIVDCDVIQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIV-DLDY 179
ADGGTRTA+ITGA+VAL ++ + K +K H+AA+S G+L V DLDY
Sbjct: 121 ADGGTRTASITGAFVALKLAIEKLLRE--KELSEDPIKEHLAAVSVGILPDGTCVTDLDY 178
Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
EDS VD N VMT+SG VE+QG+ E ATF + ML K+ I DLIK QK +
Sbjct: 179 QEDSAALVDMNLVMTESGKFVEIQGTGEEATFDGEQLNEMLFFGKNAIEDLIKEQKHAL 237
>gi|313672547|ref|YP_004050658.1| rnase ph [Calditerrivibrio nitroreducens DSM 19672]
gi|312939303|gb|ADR18495.1| RNAse PH [Calditerrivibrio nitroreducens DSM 19672]
Length = 238
Score = 168 bits (424), Expect = 7e-40, Method: Composition-based stats.
Identities = 103/239 (43%), Positives = 160/239 (66%), Gaps = 3/239 (1%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR GR +Q+R+I + + +Y +GS L+++G+T ++ AT+ E VP +++ T GW+T
Sbjct: 1 MRNDGRLNDQLRDIRVVKDYIRYPQGSVLIEYGETKVICNATISEGVPPFLKGTGTGWLT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
+EY MLP ST R +RE+ G+ GR+QEI R+IGR+LRS +DLS +G R I IDCDVIQ
Sbjct: 61 SEYSMLPCSTHTRNQRESQKGKLTGRTQEISRLIGRSLRSAIDLSLIGERTITIDCDVIQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+ITG ++AL+ Q + + ++ +K VAA+S G++ G ++DL+Y
Sbjct: 121 ADGGTRTASITGGFLALYIACQKLSED---LKIGNPIKSFVAAVSLGIVNGEIMLDLNYE 177
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
EDS + D N + + I+E+QG++E+ TF +D M++L + I LI +QK V++
Sbjct: 178 EDSNAEADINLIANEKSEIIEIQGTSEKGTFDKDMLNKMIDLGLNGINQLIDIQKRVLN 236
>gi|238902734|ref|YP_002928530.1| defective ribonuclease PH [Escherichia coli BW2952]
gi|298351813|sp|P0CG18|RNPH_ECOBW RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|238860742|gb|ACR62740.1| defective ribonuclease PH [Escherichia coli BW2952]
gi|260447338|gb|ACX37760.1| ribonuclease PH [Escherichia coli DH1]
gi|315138225|dbj|BAJ45384.1| ribonuclease PH [Escherichia coli DH1]
Length = 238
Score = 168 bits (424), Expect = 7e-40, Method: Composition-based stats.
Identities = 125/240 (52%), Positives = 166/240 (69%), Gaps = 2/240 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR +GR NQ+R ++LTR +K+AEGS LV+FGDT +L TA++EE VP +++ GWIT
Sbjct: 1 MRPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWIT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPRST R REA G+QGGR+ EIQR+I RALR+ VDL ALG I +DCDV+Q
Sbjct: 61 AEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+ITGA VAL D LQ + + + +KG VAA+S G++ G + DL+Y
Sbjct: 121 ADGGTRTASITGACVALVDALQKLVEN--GKLKTNPMKGMVAAVSVGIVNGEAVCDLEYV 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
EDS + D N VMT+ G I+EVQG+AE F+ + +L LA+ I ++ QK ++N
Sbjct: 179 EDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLILLALARGGIESIVATQKAALAN 238
>gi|188495519|ref|ZP_03002789.1| ribonuclease PH [Escherichia coli 53638]
gi|188490718|gb|EDU65821.1| ribonuclease PH [Escherichia coli 53638]
gi|332345611|gb|AEE58945.1| ribonuclease PH [Escherichia coli UMNK88]
Length = 238
Score = 168 bits (424), Expect = 7e-40, Method: Composition-based stats.
Identities = 125/240 (52%), Positives = 166/240 (69%), Gaps = 2/240 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR +GR NQ+R ++LTR +K+AEGS LV+FGDT +L TA++EE VP +++ GWIT
Sbjct: 1 MRPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWIT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPRST R REA G+QGGR+ EIQR+I RALR+ VDL ALG I +DCDV+Q
Sbjct: 61 AEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+ITGA VAL D LQ + + + +KG VAA+S G++ G + DL+Y
Sbjct: 121 ADGGTRTASITGACVALVDALQKLVEN--GKLKTNPMKGMVAAVSVGIVNGEAVCDLEYV 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
EDS + D N VMT+ G I+EVQG+AE F+ + +L LA+ I ++ QK ++N
Sbjct: 179 EDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLTLLALARGGIESIVATQKAALAN 238
>gi|16800270|ref|NP_470538.1| ribonuclease PH [Listeria innocua Clip11262]
gi|21759406|sp|Q92CH1|RNPH_LISIN RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|16413660|emb|CAC96432.1| lin1201 [Listeria innocua Clip11262]
Length = 248
Score = 168 bits (424), Expect = 7e-40, Method: Composition-based stats.
Identities = 109/242 (45%), Positives = 158/242 (65%), Gaps = 1/242 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR GR++N +REI +T + EGS L+ G+T ++ +A++E KVP ++R GWI+
Sbjct: 1 MRFDGREKNALREIEVTPDYLMHPEGSVLIASGNTKVICSASVETKVPPFMRGEGRGWIS 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEY MLPR+T R RE+ G+ GR+ EIQR+IGRALR+VVDL ALG R I +DCDVIQ
Sbjct: 61 AEYSMLPRATNTRNIRESSKGKVTGRTMEIQRLIGRALRAVVDLDALGERTIWLDCDVIQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+ITGA++A+ + +++ F V A + G ++DL+Y
Sbjct: 121 ADGGTRTASITGAFIAMVMAIAKLDEEVP-FTKFPVKDFLAATSVGVLEEGGTVLDLNYV 179
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
EDS VD N +MT SG VE+QG+ E ATFS+ ++ L K I++LI++QK+ + +
Sbjct: 180 EDSAAQVDMNIIMTGSGAFVELQGTGEEATFSETELAELIALGKKGISELIEIQKETLGD 239
Query: 241 EV 242
++
Sbjct: 240 KI 241
>gi|326330800|ref|ZP_08197101.1| tRNA nucleotidyltransferase [Nocardioidaceae bacterium Broad-1]
gi|325951330|gb|EGD43369.1| tRNA nucleotidyltransferase [Nocardioidaceae bacterium Broad-1]
Length = 235
Score = 168 bits (424), Expect = 7e-40, Method: Composition-based stats.
Identities = 111/238 (46%), Positives = 147/238 (61%), Gaps = 7/238 (2%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R GR ++++R I +TR +A GS L++FG T +L A+ E VP W + + GW+TA
Sbjct: 4 RADGRADDELRPIKITRNWLDHAAGSVLIEFGKTRVLCAASASEGVPRWRKGSGLGWVTA 63
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
EY MLP ST R RE+V G+ GGR+ EI R++GR+LR+V+D ALG I IDCDV+QA
Sbjct: 64 EYAMLPASTHERSSRESVKGKIGGRTHEISRLVGRSLRAVIDYKALGENTINIDCDVLQA 123
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
DGGTRTAAITGA+VAL D + + VAAIS G++ G P +DL Y E
Sbjct: 124 DGGTRTAAITGAYVALADAVASLGVSKALTGS-------VAAISVGIIDGVPRLDLPYEE 176
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
D + D N VMT G VEVQG+AE F + A+L L + ADL KLQ+ ++
Sbjct: 177 DVRAETDMNIVMTGEGKFVEVQGTAEGVAFDRAELDALLALGEKGCADLTKLQEAALA 234
>gi|229818320|ref|ZP_04448601.1| hypothetical protein BIFANG_03620 [Bifidobacterium angulatum DSM
20098]
gi|229784190|gb|EEP20304.1| hypothetical protein BIFANG_03620 [Bifidobacterium angulatum DSM
20098]
Length = 254
Score = 168 bits (424), Expect = 7e-40, Method: Composition-based stats.
Identities = 107/240 (44%), Positives = 155/240 (64%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R GR+ +++R + +TR + EGS L++ G+T ++ TAT VP W +++ GW+TA
Sbjct: 15 RADGRKVDELRPVRITRHFTDAPEGSVLIECGNTRVMCTATFTAGVPRWRKDSGLGWVTA 74
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
EY MLPR+T R RE+V G+ GGR+ EI R+IGR LR VVD+ ALG I IDCDV+QA
Sbjct: 75 EYAMLPRATAERTDRESVRGKIGGRTHEISRLIGRCLRGVVDMKALGENMIQIDCDVLQA 134
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
DGGTRTA++TGA+VAL D L E + +VL V+A+S G++ G P++DL Y E
Sbjct: 135 DGGTRTASVTGAYVALVDALDWAEKHHHIRSAKKVLTDCVSAVSVGVISGTPMLDLPYVE 194
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
DS D N MT SG +E+QG+AE F++D +L+LA+ +L Q++ ++ +
Sbjct: 195 DSAAMTDMNVAMTGSGAFIELQGTAEHRPFTRDELGTLLDLAEKGNKELQAAQREALAKD 254
>gi|225165849|ref|ZP_03727626.1| tRNA nucleotidyltransferase [Opitutaceae bacterium TAV2]
gi|224799908|gb|EEG18360.1| tRNA nucleotidyltransferase [Opitutaceae bacterium TAV2]
Length = 254
Score = 168 bits (424), Expect = 7e-40, Method: Composition-based stats.
Identities = 110/243 (45%), Positives = 154/243 (63%), Gaps = 4/243 (1%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT--KHGWI 59
R GR+ +Q+R I+ ++ +A GS L FG+T ++ AT+E KVP+W++ GW+
Sbjct: 6 RADGRRPDQLRPITFEANIAPHATGSVLASFGNTRVICAATIEPKVPLWMKQQKVPGGWL 65
Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119
TAEY +LP ST +R R+ G+ GR+ EIQR+IGRALR+V+DLS LG + IDCDV+
Sbjct: 66 TAEYSLLPYSTHDRKARDISKGKLDGRTVEIQRLIGRALRAVLDLSKLGENTLWIDCDVL 125
Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179
QADGGTRTA+ITGA++A LQ + D +AAIS G+L G ++DL Y
Sbjct: 126 QADGGTRTASITGAYLATRLALQKLLDT--GKLAENPFTDSIAAISVGILGGRELLDLPY 183
Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
ED +VDAN VMT GH VEVQ S E ATF+ D A+L LA+ + ++ LQ ++
Sbjct: 184 TEDKDAEVDANIVMTGRGHFVEVQTSGEEATFTYDQLQALLGLAQKGLKEIAALQTAFLT 243
Query: 240 NEV 242
++
Sbjct: 244 RQL 246
>gi|118462847|ref|YP_880792.1| ribonuclease PH [Mycobacterium avium 104]
gi|166228290|sp|A0QD04|RNPH_MYCA1 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|118164134|gb|ABK65031.1| ribonuclease PH [Mycobacterium avium 104]
Length = 259
Score = 168 bits (424), Expect = 7e-40, Method: Composition-based stats.
Identities = 106/238 (44%), Positives = 152/238 (63%), Gaps = 1/238 (0%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R GR ++++R + +TR +++ GS L++FG T ++ TA++ E VP W + + GW+TA
Sbjct: 4 REDGRLDDELRPLVITRGFTEHPAGSVLIEFGHTKVMCTASVTEGVPRWRKGSGLGWLTA 63
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
EY MLP +T R RE+V GR GR+QEI R+IGR+LR+ +DL+ALG I +DCDV+QA
Sbjct: 64 EYAMLPSATHTRSDRESVKGRLSGRTQEISRLIGRSLRACIDLAALGENTIAVDCDVLQA 123
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
DGGTRTAAITGA+VAL D + K + L +AA+S G++ G VDL Y E
Sbjct: 124 DGGTRTAAITGAFVALADA-VTYLSAAGKLSDPRPLSCAIAAVSVGVVDGRIRVDLPYEE 182
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
D+ +VD N V TD+G +VEVQG+ E ATF + +L+ A L Q++ +
Sbjct: 183 DARAEVDMNVVATDTGTLVEVQGTGEGATFPRSTLDKLLDAALAACDKLFAAQREALK 240
>gi|298369114|ref|ZP_06980432.1| tRNA nucleotidyltransferase [Neisseria sp. oral taxon 014 str.
F0314]
gi|298283117|gb|EFI24604.1| tRNA nucleotidyltransferase [Neisseria sp. oral taxon 014 str.
F0314]
Length = 246
Score = 168 bits (424), Expect = 8e-40, Method: Composition-based stats.
Identities = 117/234 (50%), Positives = 170/234 (72%), Gaps = 2/234 (0%)
Query: 5 GRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYG 64
GR + +R+I +T +A+GSCL++ G+T ++ TA+++E VP ++R + GW+TAEYG
Sbjct: 8 GRAADSLRDIKITPHFLPHADGSCLIECGNTKVICTASVDENVPPFLRGKEQGWVTAEYG 67
Query: 65 MLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGG 124
MLP ST R++REA +G+Q GR+QEIQR+IGR+LR+VVD+ LG RQI+IDCDVIQADGG
Sbjct: 68 MLPASTATRMRREAAAGKQSGRTQEIQRLIGRSLRAVVDMEKLGERQILIDCDVIQADGG 127
Query: 125 TRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDST 184
TRTA+ITGA+VAL ++ + S+ ++ VAA+S G++ G P++DLDY EDS
Sbjct: 128 TRTASITGAFVALQIAVEKL--LSDGLIGENPIREAVAAVSAGVVGGVPLLDLDYPEDSG 185
Query: 185 IDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
D D N VMT SG I+E+QG+AE A FS D ++ LA+ IA+L++ Q++ +
Sbjct: 186 CDSDVNIVMTASGKIIEIQGTAEGAPFSLDELGKLIALAQKGIAELVRHQQNAL 239
>gi|72119576|gb|AAZ61839.1| RNAse PH [Ralstonia eutropha JMP134]
Length = 258
Score = 168 bits (424), Expect = 8e-40, Method: Composition-based stats.
Identities = 128/239 (53%), Positives = 165/239 (69%), Gaps = 2/239 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR SGR + +R ISLTR +++AEGS L FGDT +L TA++ KVP + + GW+T
Sbjct: 20 MRPSGRAADALRSISLTRHYTRHAEGSVLCAFGDTKVLCTASVLAKVPPHKKGSGEGWVT 79
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPR+T R REA G+Q GR+QEIQR+IGRA+RSV DL+ALG + +DCDV+Q
Sbjct: 80 AEYGMLPRATHTRSDREAARGKQTGRTQEIQRLIGRAMRSVFDLAALGEYTLHLDCDVLQ 139
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTAAITGA+VA HD + M + + ++ VAA+S GM+ G P++DLDY
Sbjct: 140 ADGGTRTAAITGAFVAAHDAISTM--LRDGLIAASPIRDFVAAVSVGMVDGVPLLDLDYA 197
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
EDS D D N VMT SG VEVQG+AE A FS+ AM LA+D IA L++ Q+ +
Sbjct: 198 EDSNCDTDMNVVMTGSGGFVEVQGTAEGAAFSRADLDAMTRLAEDGIAQLVRHQRQALG 256
>gi|163845843|ref|YP_001633887.1| ribonuclease PH [Chloroflexus aurantiacus J-10-fl]
gi|222523554|ref|YP_002568024.1| ribonuclease PH [Chloroflexus sp. Y-400-fl]
gi|163667132|gb|ABY33498.1| ribonuclease PH [Chloroflexus aurantiacus J-10-fl]
gi|222447433|gb|ACM51699.1| ribonuclease PH [Chloroflexus sp. Y-400-fl]
Length = 250
Score = 168 bits (424), Expect = 8e-40, Method: Composition-based stats.
Identities = 109/230 (47%), Positives = 151/230 (65%), Gaps = 4/230 (1%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR+ GR +Q+R IS+ + YAEGS L+ +G T +L TAT+E+ VP W+R + GW+T
Sbjct: 2 MRIDGRSPDQLRPISIEIGAAPYAEGSALIAYGKTRVLCTATVEDGVPAWMRGQQSGWVT 61
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEY MLPR+T R +R GR+QEIQR+IGR+LR+ +DL+ALG R I IDCDV+Q
Sbjct: 62 AEYAMLPRATLQRTRR--ERNGPSGRTQEIQRLIGRSLRAAIDLNALGERTITIDCDVLQ 119
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTAAI+G +VAL + ++ ++ VAA+S GML G ++DL Y
Sbjct: 120 ADGGTRTAAISGGYVALALAVDYLVRS--GVLETRPTLTPVAAVSVGMLQGVLLLDLCYE 177
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADL 230
EDS D+D N VM +G +EVQ +AER+ ++D A+L+LA I +
Sbjct: 178 EDSQADLDCNVVMNSAGGYIEVQATAERSAVTRDQLNALLDLAGRGIQQI 227
>gi|257783975|ref|YP_003179192.1| ribonuclease PH [Atopobium parvulum DSM 20469]
gi|257472482|gb|ACV50601.1| ribonuclease PH [Atopobium parvulum DSM 20469]
Length = 253
Score = 168 bits (424), Expect = 8e-40, Method: Composition-based stats.
Identities = 121/237 (51%), Positives = 160/237 (67%), Gaps = 4/237 (1%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+R R +Q+R ++L R + K A+GSCLV FGDT +L AT+EE VP W R ++ GW+T
Sbjct: 16 LRSYNRAWDQIRPVTLERNLMKNADGSCLVSFGDTRVLCAATIEEGVPAWRRASRAGWVT 75
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEY MLP ST R KRE + + GRS EI+R+IGR+LRSVVDL+ LG I +DCDV+Q
Sbjct: 76 AEYAMLPASTNQRTKRERANRK--GRSMEIERLIGRSLRSVVDLNRLGEYTITLDCDVLQ 133
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+ITGAWVALHD L + + L G VAAIS G++ G ++DLDY
Sbjct: 134 ADGGTRTASITGAWVALHDALFSLVEKD--VLSRLPLTGQVAAISMGVVDGQVLLDLDYP 191
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
EDS D+D N V T+SG I+EVQG+ E F ++ +L++ + IA L++LQ V
Sbjct: 192 EDSHADIDMNLVGTESGQIIEVQGTGEGGPFDREKLNQLLDVGQAGIAHLVELQNQV 248
>gi|82779134|ref|YP_405483.1| ribonuclease PH [Shigella dysenteriae Sd197]
gi|309784379|ref|ZP_07679018.1| ribonuclease PH [Shigella dysenteriae 1617]
gi|123561122|sp|Q329L3|RNPH_SHIDS RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|81243282|gb|ABB63992.1| RNase PH [Shigella dysenteriae Sd197]
gi|308927886|gb|EFP73354.1| ribonuclease PH [Shigella dysenteriae 1617]
Length = 238
Score = 168 bits (424), Expect = 8e-40, Method: Composition-based stats.
Identities = 124/240 (51%), Positives = 166/240 (69%), Gaps = 2/240 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR +GR NQ+R ++LTR +K+AEGS LV+FGDT +L TA++EE VP +++ GWIT
Sbjct: 1 MRPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWIT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPRST R REA G+QGGR+ EIQR+I RALR+ VDL ALG I +DCDV+Q
Sbjct: 61 AEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+ITGA +AL D LQ + + + +KG VAA+S G++ G + DL+Y
Sbjct: 121 ADGGTRTASITGACMALADALQKLVEN--GKLKTNPMKGMVAAVSVGIVNGEAVCDLEYV 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
EDS + D N VMT+ G I+EVQG+AE F+ + +L LA+ I ++ QK ++N
Sbjct: 179 EDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLTLLALARGGIESIVATQKAALAN 238
>gi|261400742|ref|ZP_05986867.1| tRNA nucleotidyltransferase [Neisseria lactamica ATCC 23970]
gi|269209512|gb|EEZ75967.1| tRNA nucleotidyltransferase [Neisseria lactamica ATCC 23970]
Length = 242
Score = 168 bits (424), Expect = 8e-40, Method: Composition-based stats.
Identities = 117/239 (48%), Positives = 169/239 (70%), Gaps = 3/239 (1%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+R S R + +R+I +T + +GSCL++ G+T ++ TA+++E VP ++R GW+T
Sbjct: 5 IRTS-RAADSLRDIKITPHFLPHTDGSCLIECGNTKVICTASVDENVPPFLRGKNQGWVT 63
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLP ST +R++REA +G+Q GR+QEIQR+IGR+LR+VVD+ LG RQI+IDCDVIQ
Sbjct: 64 AEYGMLPASTASRMRREASAGKQSGRTQEIQRLIGRSLRAVVDMEKLGERQILIDCDVIQ 123
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+ITGA+VALH + + ++ VAAIS G++ G P++DLDY
Sbjct: 124 ADGGTRTASITGAFVALHIAVGKLISD--GILTENPIREAVAAISAGIVGGVPLLDLDYP 181
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
EDS D D N VMT SG I+E+QG+AE A FS + ++ LA+ I +L++ Q++ +S
Sbjct: 182 EDSGCDSDVNIVMTASGKIIEIQGTAEGAPFSLEELGKLIGLAEKGIGELLRYQQNALS 240
>gi|257866170|ref|ZP_05645823.1| ribonuclease PH/Ham1 [Enterococcus casseliflavus EC30]
gi|257872500|ref|ZP_05652153.1| ribonuclease PH/Ham1 [Enterococcus casseliflavus EC10]
gi|257800104|gb|EEV29156.1| ribonuclease PH/Ham1 [Enterococcus casseliflavus EC30]
gi|257806664|gb|EEV35486.1| ribonuclease PH/Ham1 [Enterococcus casseliflavus EC10]
Length = 450
Score = 168 bits (424), Expect = 9e-40, Method: Composition-based stats.
Identities = 116/239 (48%), Positives = 159/239 (66%), Gaps = 3/239 (1%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR GR+E +R + + V K+ EGS ++ FGDT ++ +AT+E++VP ++R+T GW+T
Sbjct: 1 MRHDGRKETMLRPVKIQTNVYKHPEGSVVISFGDTTVICSATIEDRVPPFLRDTGKGWVT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEY MLPR+T R +RE+ G+ GR+ EIQR+I R+LR+VVDL LG R I++DCDV+Q
Sbjct: 61 AEYSMLPRATNTRNRRESAKGKLSGRTMEIQRLIARSLRAVVDLEKLGERSIVVDCDVVQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIV-DLDY 179
ADGGTRTA+ITGA+VAL + + +K +K H+AAIS G+L V DLDY
Sbjct: 121 ADGGTRTASITGAFVALRLAIDTL--LRDKALTEDPIKEHLAAISVGILPDGTCVTDLDY 178
Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
EDS+ VD N VMT+SG VE+QG+ E ATF ML K I +LI QK+ +
Sbjct: 179 QEDSSAAVDMNLVMTESGRFVELQGTGEEATFDGQQLNEMLIYGKTAIEELIAYQKEAL 237
>gi|159036643|ref|YP_001535896.1| ribonuclease PH [Salinispora arenicola CNS-205]
gi|189043771|sp|A8M4I1|RNPH_SALAI RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|157915478|gb|ABV96905.1| ribonuclease PH [Salinispora arenicola CNS-205]
Length = 241
Score = 168 bits (424), Expect = 9e-40, Method: Composition-based stats.
Identities = 114/239 (47%), Positives = 159/239 (66%), Gaps = 1/239 (0%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R GR + +R ++LTR S + EGS LV+FG T +L TA++ E VP W + + GW+TA
Sbjct: 3 RPDGRLPDHLRPVTLTRGWSTHPEGSVLVEFGATRVLCTASVTEGVPRWRKGSGLGWVTA 62
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
EY MLPR+T R RE+V GR GGR+ EI R+IGR+LR+ +DL ALG +++DCDV+QA
Sbjct: 63 EYAMLPRATNTRSDRESVKGRVGGRTHEISRLIGRSLRASIDLKALGENSVVLDCDVLQA 122
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKF-QLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
DGGTRTAAITGA+VAL+D + + + + V+ VAA+S G++ G P +DL+Y
Sbjct: 123 DGGTRTAAITGAYVALYDAVTWLAARRSLAGRPENVMHRSVAAVSVGVVAGEPRLDLNYD 182
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
ED+T +VD N V T +G VEVQG+ E FS+ A+L+LA DL + Q+ +S
Sbjct: 183 EDATAEVDLNVVCTGTGDFVEVQGTGEAGVFSRGQLDALLDLAVAGCLDLAEAQRKALS 241
>gi|78223083|ref|YP_384830.1| ribonuclease PH [Geobacter metallireducens GS-15]
gi|123571779|sp|Q39UG9|RNPH_GEOMG RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|78194338|gb|ABB32105.1| RNAse PH [Geobacter metallireducens GS-15]
Length = 238
Score = 168 bits (424), Expect = 9e-40, Method: Composition-based stats.
Identities = 119/240 (49%), Positives = 160/240 (66%), Gaps = 2/240 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR GR+ +R I++TR K+AEG+ LV+FGDT ++ TA++EE VP ++R GW+T
Sbjct: 1 MRSDGREAGSLRGINITRHYIKHAEGAVLVEFGDTKVICTASVEESVPPFLRGKGTGWVT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEY MLPRST R REA G+ GGR+ EIQR+IGR+LR+V DL+ LG R ++IDCDVIQ
Sbjct: 61 AEYSMLPRSTHTRSSREAARGKIGGRTHEIQRLIGRSLRAVTDLTLLGERSVLIDCDVIQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+ITGA+VAL D L + + +K VAA+S G++ G ++DL+Y
Sbjct: 121 ADGGTRTASITGAYVALVDALHLLVER--GVLPLLPIKEAVAAVSVGIVDGNILLDLNYV 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
EDS +VD NFVMT S VEVQG+AE F+ + M A + I L +Q + +S
Sbjct: 179 EDSAAEVDMNFVMTSSDRFVEVQGTAESEPFTVEQMDGMRVAAVEGIRKLFSIQNEALSR 238
>gi|227354797|ref|ZP_03839214.1| ribonuclease PH [Proteus mirabilis ATCC 29906]
gi|227165115|gb|EEI49946.1| ribonuclease PH [Proteus mirabilis ATCC 29906]
Length = 251
Score = 167 bits (423), Expect = 9e-40, Method: Composition-based stats.
Identities = 122/240 (50%), Positives = 163/240 (67%), Gaps = 2/240 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR + RQ +Q+R I++TR +K+AEGS LV+FGDT +L AT+EE VP +++ GW+T
Sbjct: 14 MRPADRQADQVRPITITRHYTKHAEGSVLVEFGDTKVLCNATVEEGVPRFLKGQGQGWVT 73
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPR+T +R REA G+Q GR+ EIQR+I R+LR+ VDL ALG I +DCDVIQ
Sbjct: 74 AEYGMLPRATNSRNAREAARGKQTGRTMEIQRLIARSLRAAVDLKALGEFTITVDCDVIQ 133
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+I+GA VAL D L M + LK VAA+S G++ G P+ DL+Y
Sbjct: 134 ADGGTRTASISGACVALVDALNKMVAEGKLKKS--PLKSMVAAVSVGIVDGQPLCDLEYV 191
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
EDS + D N VM D G ++EVQG+AE A FS + A+L LAK + + + QK+ +
Sbjct: 192 EDSAAETDMNVVMIDDGRMIEVQGTAEGAPFSHEELLALLALAKGGLEKIFEAQKEALKQ 251
>gi|157373079|ref|YP_001481068.1| ribonuclease PH [Serratia proteamaculans 568]
gi|166991086|sp|A8GLF0|RNPH_SERP5 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|157324843|gb|ABV43940.1| ribonuclease PH [Serratia proteamaculans 568]
Length = 238
Score = 167 bits (423), Expect = 9e-40, Method: Composition-based stats.
Identities = 121/240 (50%), Positives = 163/240 (67%), Gaps = 2/240 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR +GR Q+R ++LTR +K+AEGS LV+FGDT +L TAT+EE VP +++ GWIT
Sbjct: 1 MRPAGRAPQQVRPLTLTRHYTKHAEGSVLVEFGDTKVLCTATVEEGVPRFLKGQGQGWIT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPRST +R REA G+QGGR+ EIQR+I R+LR+ VDL LG I +DCDV+Q
Sbjct: 61 AEYGMLPRSTHSRNAREAAKGKQGGRTLEIQRLIARSLRAAVDLKKLGEFTITLDCDVLQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+I+GA VAL D L + + +KG VAA+S G++ G + DL+Y
Sbjct: 121 ADGGTRTASISGACVALADALNALVAN--GKLKANPMKGLVAAVSVGIVNGEALCDLEYV 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
EDS + D N VM + G ++EVQG+AE FS D A+L LA+ I + + QK +++
Sbjct: 179 EDSAAETDMNVVMMEDGRMIEVQGTAEGEPFSHDELLALLALARGGIDTIFQAQKAALAD 238
>gi|167618527|ref|ZP_02387158.1| polynucleotide phosphorylase/polyadenylase [Burkholderia
thailandensis Bt4]
Length = 713
Score = 167 bits (423), Expect = 9e-40, Method: Composition-based stats.
Identities = 47/242 (19%), Positives = 93/242 (38%), Gaps = 18/242 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHG 57
R+ GR +R I + V GS L G+T L AT +E++ +
Sbjct: 322 RIDGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQALVVATLGTKGDEQIIDALEGEYRD 381
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y M P +TG + + R+ G + RAL + + + I + +
Sbjct: 382 RFMLHYNMPPFATGETGRVGSPKRREIGHGRL----AKRALVACLPSADEFGYSIRVVSE 437
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ G +AL D M+ + +L+G+ A+ +
Sbjct: 438 ITESNGSSSMASVCGGCLALMDAGVPMKAHVAGIAMGLILEGNKFAVLTD---------I 488
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T G + +Q + +++ L AK+ ++ K+
Sbjct: 489 LGDEDHLGDMDFKVAGTAEG-VTALQMDIKIQGITKEIMQVALAQAKEGRMHILGKMKEA 547
Query: 238 IS 239
++
Sbjct: 548 VA 549
Score = 98.0 bits (242), Expect = 1e-18, Method: Composition-based stats.
Identities = 35/233 (15%), Positives = 71/233 (30%), Gaps = 27/233 (11%)
Query: 13 EISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT----KHGWITAEYGMLP 67
++ L +++ A G+ LV DT +L T + + T G +P
Sbjct: 17 KVRLETGEIARQASGAVLVDVEDTVVLATVVGAKSAKPGQDFFPLTVDYIEKTYSAGKIP 76
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R GR R+I R LR + Q++I + +
Sbjct: 77 GGFFRR------EGRPSEHETLTSRLIDRPLRPLFPEGFYNEVQVVIHVLSVNPEVPADI 130
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
A+ GA A G V A + +++ + +
Sbjct: 131 PALIGASAA-------------LAVSGLPFNGPVGAARVAYVNNEYVLNPTREQIKASRL 177
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
D T+ ++ V+ +E +D + +++ I +++
Sbjct: 178 DLVVAGTER-AVLMVE--SEADQLPEDVMLGAVVFGHEQMQTAIDAIHELVRE 227
>gi|30248295|ref|NP_840365.1| 3' exoribonuclease [Nitrosomonas europaea ATCC 19718]
gi|61216039|sp|Q82XJ4|RNPH_NITEU RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|30138181|emb|CAD84187.1| 3' exoribonuclease family [Nitrosomonas europaea ATCC 19718]
Length = 241
Score = 167 bits (423), Expect = 1e-39, Method: Composition-based stats.
Identities = 118/238 (49%), Positives = 166/238 (69%), Gaps = 2/238 (0%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R + R QMR + + R ++AEGS L+++G+T ++ TA++ EKVP +++ GW+TA
Sbjct: 3 RCNNRAPAQMRPVRIIRHYVRHAEGSVLIEYGETRVICTASVIEKVPPFLKGAGQGWLTA 62
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
EYGMLPRSTG R++REA G+Q GR+ EIQR+IGRALRS++DL LG R I +DCDVIQA
Sbjct: 63 EYGMLPRSTGERMQREAAKGKQSGRTMEIQRLIGRALRSILDLEKLGERTIQMDCDVIQA 122
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
DGGTRTA+ITGA+VAL+D + ++ ++ HVAA+S G+L G P++DLDY E
Sbjct: 123 DGGTRTASITGAFVALYDAIDYLRAERM--ISQNPIRDHVAAVSVGILKGQPLLDLDYLE 180
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
DS D D N VMT S +VEVQG+AE+ FS+ MLN+A+ + +L +Q+ +
Sbjct: 181 DSGCDTDLNVVMTGSLGLVEVQGTAEKVVFSRQELDVMLNMAQQGLQELFDVQRKALE 238
>gi|83718859|ref|YP_441610.1| polynucleotide phosphorylase/polyadenylase [Burkholderia
thailandensis E264]
gi|167580418|ref|ZP_02373292.1| polynucleotide phosphorylase/polyadenylase [Burkholderia
thailandensis TXDOH]
gi|257139694|ref|ZP_05587956.1| polynucleotide phosphorylase/polyadenylase [Burkholderia
thailandensis E264]
gi|123726649|sp|Q2SZN9|PNP_BURTA RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|83652684|gb|ABC36747.1| polyribonucleotide nucleotidyltransferase [Burkholderia
thailandensis E264]
Length = 713
Score = 167 bits (423), Expect = 1e-39, Method: Composition-based stats.
Identities = 47/242 (19%), Positives = 93/242 (38%), Gaps = 18/242 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHG 57
R+ GR +R I + V GS L G+T L AT +E++ +
Sbjct: 322 RIDGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQALVVATLGTKGDEQIIDALEGEYRD 381
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y M P +TG + + R+ G + RAL + + + I + +
Sbjct: 382 RFMLHYNMPPFATGETGRVGSPKRREIGHGRL----AKRALVACLPSADEFGYSIRVVSE 437
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ G +AL D M+ + +L+G+ A+ +
Sbjct: 438 ITESNGSSSMASVCGGCLALMDAGVPMKAHVAGIAMGLILEGNKFAVLTD---------I 488
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T G + +Q + +++ L AK+ ++ K+
Sbjct: 489 LGDEDHLGDMDFKVAGTAEG-VTALQMDIKIQGITKEIMQVALAQAKEGRMHILGKMKEA 547
Query: 238 IS 239
++
Sbjct: 548 VA 549
Score = 98.0 bits (242), Expect = 1e-18, Method: Composition-based stats.
Identities = 35/233 (15%), Positives = 71/233 (30%), Gaps = 27/233 (11%)
Query: 13 EISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT----KHGWITAEYGMLP 67
++ L +++ A G+ LV DT +L T + + T G +P
Sbjct: 17 KVRLETGEIARQASGAVLVDVEDTVVLATVVGAKSAKPGQDFFPLTVDYIEKTYSAGKIP 76
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R GR R+I R LR + Q++I + +
Sbjct: 77 GGFFRR------EGRPSEHETLTSRLIDRPLRPLFPEGFYNEVQVVIHVLSVNPEVPADI 130
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
A+ GA A G V A + +++ + +
Sbjct: 131 PALIGASAA-------------LAVSGLPFNGPVGAARVAYVNNEYVLNPTREQIKASRL 177
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
D T+ ++ V+ +E +D + +++ I +++
Sbjct: 178 DLVVAGTER-AVLMVE--SEADQLPEDVMLGAVVFGHEQMQTAIDAIHELVRE 227
>gi|167644139|ref|YP_001681802.1| ribonuclease PH [Caulobacter sp. K31]
gi|189043756|sp|B0T369|RNPH_CAUSK RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|167346569|gb|ABZ69304.1| ribonuclease PH [Caulobacter sp. K31]
Length = 242
Score = 167 bits (423), Expect = 1e-39, Method: Composition-based stats.
Identities = 124/239 (51%), Positives = 168/239 (70%), Gaps = 2/239 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR S R + +R ++L V++YAEGSCL+ FG T +L TAT+EE VP W+RN GW+T
Sbjct: 1 MRPSERAPDVLRVVTLETGVNRYAEGSCLISFGHTKVLVTATVEENVPGWMRNKGAGWVT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPR+T R +REA G+Q GR+QEIQR+IGR+LR+VVDL ALG RQI +DCDV+Q
Sbjct: 61 AEYGMLPRATHTRGRREAALGKQSGRTQEIQRLIGRSLRAVVDLKALGERQISLDCDVLQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTAAITGAWVAL + ++ + + + G VAA+SCG+ P++DLDY
Sbjct: 121 ADGGTRTAAITGAWVALRIAVNYLLEE--GVLKTDPIVGQVAAVSCGVFKDTPVLDLDYE 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
EDS + D+NFV+T+ G IVE+Q + E+ F++ F + LA+ I +L Q + +S
Sbjct: 179 EDSQAEADSNFVLTNVGDIVEIQATGEKRGFTRGEFEQLFALAEKGIGELFVKQLEAVS 237
>gi|296170279|ref|ZP_06851870.1| tRNA nucleotidyltransferase [Mycobacterium parascrofulaceum ATCC
BAA-614]
gi|295895002|gb|EFG74721.1| tRNA nucleotidyltransferase [Mycobacterium parascrofulaceum ATCC
BAA-614]
Length = 259
Score = 167 bits (423), Expect = 1e-39, Method: Composition-based stats.
Identities = 105/238 (44%), Positives = 153/238 (64%), Gaps = 1/238 (0%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R GR ++++R + +TR + + GS L++FG T ++ TA++ + VP W + + GW+TA
Sbjct: 4 REDGRLDDELRPVVITRGFTDHPAGSVLIEFGHTKVMCTASVTDGVPRWRKGSGLGWLTA 63
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
EY MLP +T R RE+V GR GR+QEI R+IGR+LR+ +DL+ALG I +DCDV+QA
Sbjct: 64 EYAMLPSATHTRSDRESVKGRLSGRTQEISRLIGRSLRACIDLAALGENTIAVDCDVLQA 123
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
DGGTRTAAITGA+VAL D + K + L +AA+S G++ G VDL Y E
Sbjct: 124 DGGTRTAAITGAFVALADA-VTYLAAAGKLSDPRPLSCAIAAVSVGVVDGRIRVDLPYEE 182
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
D+ +VD N V TD+G +VEVQG+ E ATF + +L++A L Q++ ++
Sbjct: 183 DARAEVDMNVVATDTGTLVEVQGTGEGATFPRSTLDKLLDVALAACDKLFAAQREALA 240
>gi|197286965|ref|YP_002152837.1| ribonuclease PH [Proteus mirabilis HI4320]
gi|226736924|sp|B4F0W3|RNPH_PROMH RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|194684452|emb|CAR46192.1| ribonuclease PH [Proteus mirabilis HI4320]
Length = 238
Score = 167 bits (423), Expect = 1e-39, Method: Composition-based stats.
Identities = 122/240 (50%), Positives = 163/240 (67%), Gaps = 2/240 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR + RQ +Q+R I++TR +K+AEGS LV+FGDT +L AT+EE VP +++ GW+T
Sbjct: 1 MRPADRQADQVRPITITRHYTKHAEGSVLVEFGDTKVLCNATVEEGVPRFLKGQGQGWVT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPR+T +R REA G+Q GR+ EIQR+I R+LR+ VDL ALG I +DCDVIQ
Sbjct: 61 AEYGMLPRATNSRNAREAARGKQTGRTMEIQRLIARSLRAAVDLKALGEFTITVDCDVIQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+I+GA VAL D L M + LK VAA+S G++ G P+ DL+Y
Sbjct: 121 ADGGTRTASISGACVALVDALNKMVTEGKLKKS--PLKSMVAAVSVGIVDGQPLCDLEYV 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
EDS + D N VM D G ++EVQG+AE A FS + A+L LAK + + + QK+ +
Sbjct: 179 EDSAAETDMNVVMIDDGRMIEVQGTAEGAPFSHEELLALLALAKGGLEKIFEAQKEALKQ 238
>gi|254475610|ref|ZP_05088996.1| ribonuclease PH [Ruegeria sp. R11]
gi|214029853|gb|EEB70688.1| ribonuclease PH [Ruegeria sp. R11]
Length = 227
Score = 167 bits (423), Expect = 1e-39, Method: Composition-based stats.
Identities = 122/227 (53%), Positives = 161/227 (70%), Gaps = 2/227 (0%)
Query: 11 MREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRST 70
MR +S+ +K+AEGSCL+K GDTH+L TAT+E++VP +I+ T GW+TAEYGMLPR+T
Sbjct: 1 MRAVSIETGFTKHAEGSCLIKMGDTHVLCTATIEDRVPPFIKGTGLGWVTAEYGMLPRAT 60
Query: 71 GNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAI 130
R++REA G+QGGR+ EIQR+IGRALR+ VD ALG RQI IDCDV+QADGGTR A+I
Sbjct: 61 NTRMRREAAMGKQGGRTVEIQRLIGRALRAGVDRVALGERQISIDCDVLQADGGTRCASI 120
Query: 131 TGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDAN 190
TG WVAL + + + V VAA+SCG+ G P++DLDY EDS VD N
Sbjct: 121 TGGWVALRLAVNKLMKAGDVTIDPLV--DPVAAVSCGIYAGQPVLDLDYPEDSEAGVDGN 178
Query: 191 FVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
F+MT SG ++EVQ SAE + FS+D +++LA A+L ++QK
Sbjct: 179 FIMTGSGKLIEVQMSAEGSVFSRDQMNELMDLATKGTAELAEIQKAA 225
>gi|186682825|ref|YP_001866021.1| ribonuclease PH [Nostoc punctiforme PCC 73102]
gi|226736921|sp|B2J9Q1|RNPH_NOSP7 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|186465277|gb|ACC81078.1| ribonuclease PH [Nostoc punctiforme PCC 73102]
Length = 247
Score = 167 bits (423), Expect = 1e-39, Method: Composition-based stats.
Identities = 97/239 (40%), Positives = 144/239 (60%), Gaps = 4/239 (1%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R GR ++R IS +++A GS L + GDT +L T ++ + VP ++ T GW+TA
Sbjct: 5 RPDGRLPYELRPISFYPSFTRFAPGSVLARCGDTQVLCTVSVNKGVPKFLEGTGKGWLTA 64
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
EY MLP +T R +E + GR+QEIQR+IGR+LR+ VD ALG R + +D DV+QA
Sbjct: 65 EYRMLPSATQKR--QERELLKLSGRTQEIQRLIGRSLRAAVDFEALGERTLTVDADVLQA 122
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
D GTRT AITG++VAL + + + + VAA+S G+L P +DL+Y E
Sbjct: 123 DAGTRTTAITGSFVALAHAISKLLQEGVLERSPLCGQ--VAAVSVGLLEAEPFLDLNYIE 180
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
D VD N VM I+EVQG+AE +FS+ +L++A+ I +L+ Q++ I++
Sbjct: 181 DVAATVDFNVVMDQHLGIIEVQGTAEEGSFSRTQLDQLLDVAQKGIQELLIAQREAIAD 239
>gi|327439325|dbj|BAK15690.1| RNase PH [Solibacillus silvestris StLB046]
Length = 250
Score = 167 bits (423), Expect = 1e-39, Method: Composition-based stats.
Identities = 110/240 (45%), Positives = 158/240 (65%), Gaps = 3/240 (1%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R R N++R + + + EGS L+ G+T ++ TAT+EEKVP ++R GWITA
Sbjct: 3 RHDLRAVNELRPVQIDNNYLMHPEGSVLITVGNTKVICTATIEEKVPGFLRGQGKGWITA 62
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
EY MLPR+T R +RE+ +G+ GR+ EIQR+IGRALR+VVDL ALG + + IDCDVIQA
Sbjct: 63 EYSMLPRATEQRTRRESSAGKVSGRTMEIQRLIGRALRAVVDLEALGEKTVWIDCDVIQA 122
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY-PIVDLDYG 180
DGGTRTA+ITGA+VA+ + + +K ++ + ++AA S G L ++DL+Y
Sbjct: 123 DGGTRTASITGAFVAMTQAIAKL--GVDKPFVNFPVTDYLAATSVGKLENIGAVLDLNYV 180
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
EDS VD N +MT +G VE+QG+ E ATFS+ +L+L + IA LI++QK + +
Sbjct: 181 EDSAAQVDMNVIMTGAGEFVELQGTGEEATFSRSELNELLDLGEAGIAQLIEMQKTALGD 240
>gi|302381326|ref|YP_003817149.1| ribonuclease PH [Brevundimonas subvibrioides ATCC 15264]
gi|302191954|gb|ADK99525.1| ribonuclease PH [Brevundimonas subvibrioides ATCC 15264]
Length = 242
Score = 167 bits (423), Expect = 1e-39, Method: Composition-based stats.
Identities = 125/235 (53%), Positives = 163/235 (69%), Gaps = 2/235 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR S R Q+R ++L V++YAEGSCLV FG T +L TA++EE VP W+R GW+T
Sbjct: 1 MRPSDRTPEQLRAVTLETGVNRYAEGSCLVSFGHTKVLVTASVEENVPGWMRGKGAGWVT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPR+T R +REA +G+Q GR+QEIQR+IGR+LR+VVDL ALG RQ++IDCDVIQ
Sbjct: 61 AEYGMLPRATHTRGRREAAAGKQTGRTQEIQRLIGRSLRAVVDLKALGERQVLIDCDVIQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+ITGAWVA+ L ++ + VAA+SCG+ P++DLDY
Sbjct: 121 ADGGTRTASITGAWVAMATALNYLRAE--GVMKVDPILDQVAAVSCGIFADTPVLDLDYE 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
EDS + D NFV+T SG IVE+Q + E+ FS+ F + LA+ DL LQ+
Sbjct: 179 EDSNAEADGNFVLTGSGTIVEIQATGEKRGFSRPEFDRLFQLAELGCNDLFALQR 233
>gi|213579701|ref|ZP_03361527.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar Typhi
str. E98-0664]
Length = 238
Score = 167 bits (423), Expect = 1e-39, Method: Composition-based stats.
Identities = 125/240 (52%), Positives = 163/240 (67%), Gaps = 2/240 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR +GR NQ+R ++LTR +K+AEGS LV+FGDT +L TA++EE VP +++ GWIT
Sbjct: 1 MRPAGRSANQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWIT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPR+T R REA G+QGGR+ EIQR+I RALR+ VDL LG I +DCDVIQ
Sbjct: 61 AEYGMLPRATHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKTLGEFTITLDCDVIQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+ITGA VAL D L + + +KG VAA+S G++ G I DL+Y
Sbjct: 121 ADGGTRTASITGACVALADALNKLVAN--GKLKTNPMKGMVAAVSVGIVNGEAICDLEYV 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
EDS + D N VMT+ G I+EVQG+AE FS + +L LA+ I ++ +QK + N
Sbjct: 179 EDSAAETDMNVVMTEDGRIIEVQGTAEGEPFSHEELLTLLALARGGIESIVAMQKAALEN 238
>gi|103485749|ref|YP_615310.1| ribonuclease PH [Sphingopyxis alaskensis RB2256]
gi|123380170|sp|Q1GWJ5|RNPH_SPHAL RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|98975826|gb|ABF51977.1| RNAse PH [Sphingopyxis alaskensis RB2256]
Length = 238
Score = 167 bits (423), Expect = 1e-39, Method: Composition-based stats.
Identities = 124/240 (51%), Positives = 163/240 (67%), Gaps = 2/240 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR SGR +QMR I++ + +AEGS LV FG+T +L TA++EEKVP ++R GW+T
Sbjct: 1 MRPSGRAADQMRPIAIETNFTIHAEGSVLVSFGNTRVLVTASVEEKVPPFLRGKGQGWVT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPR+T R REA G+Q GR+QEIQR+IGR+LR+VVD+ LG RQI+IDCDVIQ
Sbjct: 61 AEYGMLPRATHTRGSREAAKGKQSGRTQEIQRLIGRSLRAVVDMQKLGERQIVIDCDVIQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+I+GAWVAL + + + + V VAAISCG+ G P++DLDY
Sbjct: 121 ADGGTRTASISGAWVALRLAVDKLIEAKQLTEDPIVDS--VAAISCGIYKGTPVLDLDYD 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
EDS + D NFV+T G IVEVQ SAE AT+ ++ +L LA+ ++ Q +
Sbjct: 179 EDSVAEADGNFVLTGKGQIVEVQASAEGATYDEEGLLRLLRLARIGCGEIFAAQAKAVGR 238
>gi|197106893|ref|YP_002132270.1| polyribonucleotide nucleotidyltransferase [Phenylobacterium
zucineum HLK1]
gi|226702673|sp|B4RC48|PNP_PHEZH RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|196480313|gb|ACG79841.1| polyribonucleotide nucleotidyltransferase [Phenylobacterium
zucineum HLK1]
Length = 715
Score = 167 bits (423), Expect = 1e-39, Method: Composition-based stats.
Identities = 49/240 (20%), Positives = 88/240 (36%), Gaps = 18/240 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +Q+R I V A GS L G+T L TL +E++ +
Sbjct: 317 RIDGRTVDQVRPILGEVGVLPRAHGSALFTRGETQALCVTTLGTGDDEQLIDALEGKYFE 376
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + + R+ G + RALR ++ I I +
Sbjct: 377 KFMLHYNFPPFSVGETGRMGSPGRREVGHGKL----AWRALRPMLPSYEEFPYTIRIVSE 432
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A + G+ +AL D ++ + + +L+ A+ +
Sbjct: 433 IFESNGSSSMATVCGSSLALMDAGVPLKKPVSGIAMGLILEKDGFAVLSD---------I 483
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T G I +Q + A +++ L AK ++
Sbjct: 484 LGDEDHLGDMDFKVAGTADG-ITSLQMDIKIAGITEEIMKKALEQAKGGRDHILAEMNKA 542
Score = 107 bits (266), Expect = 2e-21, Method: Composition-based stats.
Identities = 34/233 (14%), Positives = 73/233 (31%), Gaps = 28/233 (12%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----HGWITAEYGMLPR 68
++L +++ A+G+ L +G+T +L TA + + G +P
Sbjct: 16 LTLETGRMARQADGAVLATYGETMVLATAVFAKSPKPGQDFFPLTVNYQEKFYAAGKIPG 75
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
S R G + R+I R +R + Q+I +
Sbjct: 76 SFPRR------EGAPSQKETLTSRLIDRPIRPLFVKGFKNEVQVICTVLAHDLENDPDIV 129
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+ A A G +AA G + G +++ E +D
Sbjct: 130 AMVAASAA-------------LVLSGVPFMGPIAAARVGYVNGEYVLNPTLDEMKESAMD 176
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
T ++ V+ + +++ + A + +I + ++
Sbjct: 177 LVVAGTAE-AVMMVESEIKE--LTEEQVLGGVTFAHKGMQPVIDAIIE-LAEH 225
>gi|257878167|ref|ZP_05657820.1| ribonuclease PH/Ham1 [Enterococcus faecium 1,230,933]
gi|257881049|ref|ZP_05660702.1| ribonuclease PH/Ham1 [Enterococcus faecium 1,231,502]
gi|257889634|ref|ZP_05669287.1| ribonuclease PH/Ham1 [Enterococcus faecium 1,231,410]
gi|257892426|ref|ZP_05672079.1| ribonuclease PH/Ham1 [Enterococcus faecium 1,231,408]
gi|260559214|ref|ZP_05831400.1| ribonuclease PH/Ham1 protein [Enterococcus faecium C68]
gi|261207747|ref|ZP_05922432.1| ribonuclease PH/Ham1 protein [Enterococcus faecium TC 6]
gi|289565822|ref|ZP_06446264.1| ribonuclease PH [Enterococcus faecium D344SRF]
gi|293563126|ref|ZP_06677591.1| ribonuclease PH/Ham1 protein [Enterococcus faecium E1162]
gi|294614004|ref|ZP_06693934.1| ribonuclease PH/Ham1 protein [Enterococcus faecium E1636]
gi|294617101|ref|ZP_06696767.1| ribonuclease PH/Ham1 protein [Enterococcus faecium E1679]
gi|294623312|ref|ZP_06702174.1| ribonuclease PH/Ham1 protein [Enterococcus faecium U0317]
gi|314939893|ref|ZP_07847099.1| ribonuclease PH [Enterococcus faecium TX0133a04]
gi|314943740|ref|ZP_07850479.1| ribonuclease PH [Enterococcus faecium TX0133C]
gi|314949696|ref|ZP_07853014.1| ribonuclease PH [Enterococcus faecium TX0082]
gi|314953242|ref|ZP_07856181.1| ribonuclease PH [Enterococcus faecium TX0133A]
gi|314993678|ref|ZP_07859026.1| ribonuclease PH [Enterococcus faecium TX0133B]
gi|314997405|ref|ZP_07862356.1| ribonuclease PH [Enterococcus faecium TX0133a01]
gi|257812395|gb|EEV41153.1| ribonuclease PH/Ham1 [Enterococcus faecium 1,230,933]
gi|257816707|gb|EEV44035.1| ribonuclease PH/Ham1 [Enterococcus faecium 1,231,502]
gi|257825994|gb|EEV52620.1| ribonuclease PH/Ham1 [Enterococcus faecium 1,231,410]
gi|257828805|gb|EEV55412.1| ribonuclease PH/Ham1 [Enterococcus faecium 1,231,408]
gi|260074971|gb|EEW63287.1| ribonuclease PH/Ham1 protein [Enterococcus faecium C68]
gi|260078130|gb|EEW65836.1| ribonuclease PH/Ham1 protein [Enterococcus faecium TC 6]
gi|289162365|gb|EFD10223.1| ribonuclease PH [Enterococcus faecium D344SRF]
gi|291593111|gb|EFF24690.1| ribonuclease PH/Ham1 protein [Enterococcus faecium E1636]
gi|291596638|gb|EFF27865.1| ribonuclease PH/Ham1 protein [Enterococcus faecium E1679]
gi|291597280|gb|EFF28469.1| ribonuclease PH/Ham1 protein [Enterococcus faecium U0317]
gi|291604904|gb|EFF34373.1| ribonuclease PH/Ham1 protein [Enterococcus faecium E1162]
gi|313588540|gb|EFR67385.1| ribonuclease PH [Enterococcus faecium TX0133a01]
gi|313591852|gb|EFR70697.1| ribonuclease PH [Enterococcus faecium TX0133B]
gi|313594708|gb|EFR73553.1| ribonuclease PH [Enterococcus faecium TX0133A]
gi|313597603|gb|EFR76448.1| ribonuclease PH [Enterococcus faecium TX0133C]
gi|313640856|gb|EFS05436.1| ribonuclease PH [Enterococcus faecium TX0133a04]
gi|313643954|gb|EFS08534.1| ribonuclease PH [Enterococcus faecium TX0082]
Length = 451
Score = 167 bits (423), Expect = 1e-39, Method: Composition-based stats.
Identities = 121/239 (50%), Positives = 160/239 (66%), Gaps = 3/239 (1%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR GR+ ++R++ L V KY EGS +++FGDT ++ +AT+E VP ++R T GW+T
Sbjct: 1 MRHDGRKAQELRKLELQTNVFKYPEGSVVIRFGDTTVICSATIENSVPPFLRETGTGWVT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEY MLPR+T R +RE+ G+ GR+ EIQR+IGR+LR+VVDL LG R II+DCDVIQ
Sbjct: 61 AEYSMLPRATSTRNRRESSKGKLSGRTMEIQRLIGRSLRAVVDLEKLGERSIIVDCDVIQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIV-DLDY 179
ADGGTRTA+ITGA+VAL ++ + K +K H+AA+S G+L V DLDY
Sbjct: 121 ADGGTRTASITGAFVALKLAIEKLLRE--KELSEDPIKEHLAAVSVGILPDGTCVTDLDY 178
Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
EDS VD N VMT+SG VE+QG+ E ATF + ML K+ I DLIK QK +
Sbjct: 179 QEDSAALVDMNLVMTESGKFVEIQGTGEEATFDGEQLNEMLFFGKNAIEDLIKEQKHAL 237
>gi|261341748|ref|ZP_05969606.1| hypothetical protein ENTCAN_08227 [Enterobacter cancerogenus ATCC
35316]
gi|288316116|gb|EFC55054.1| tRNA nucleotidyltransferase [Enterobacter cancerogenus ATCC 35316]
Length = 238
Score = 167 bits (423), Expect = 1e-39, Method: Composition-based stats.
Identities = 124/240 (51%), Positives = 163/240 (67%), Gaps = 2/240 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR SGR NQ+R ++LTR +K+AEGS LV+FGDT +L TA++EE VP +++ GWIT
Sbjct: 1 MRPSGRSANQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWIT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPR+T R REA G+QGGR+ EIQR+I RALR+ VDL LG I +DCDVIQ
Sbjct: 61 AEYGMLPRATHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKVLGEFTITLDCDVIQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+ITGA VAL D L + + +KG VAA+S G++ G + DL+Y
Sbjct: 121 ADGGTRTASITGACVALADALNKLVAA--GKLKTNPMKGMVAAVSVGIVNGEALCDLEYV 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
EDS + D N VMT+ G I+EVQG+AE F+ + ++L LA+ I ++ QK + N
Sbjct: 179 EDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLSLLALARGGIESIVTTQKAALEN 238
>gi|84494376|ref|ZP_00993495.1| ribonuclease PH [Janibacter sp. HTCC2649]
gi|84383869|gb|EAP99749.1| ribonuclease PH [Janibacter sp. HTCC2649]
Length = 254
Score = 167 bits (423), Expect = 1e-39, Method: Composition-based stats.
Identities = 117/241 (48%), Positives = 154/241 (63%), Gaps = 2/241 (0%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R GR +REI +TR +AEGS L++FG T +L A+ E VP W++ GW+T+
Sbjct: 7 RHDGRAPEDLREIRITRNWLDHAEGSVLIEFGRTRVLCAASFTEGVPRWLKGKGTGWVTS 66
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
EY MLPRST R RE+ G+ GGR+ EI R+IGRALR+V+D ALG I++DCDV+QA
Sbjct: 67 EYEMLPRSTNTRSDRESRKGKVGGRTHEISRLIGRALRAVIDTKALGENTIVVDCDVLQA 126
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
DGGTRTA+ITGA+VAL D ++ + +Q L +AA+S G++ G P++DLDY E
Sbjct: 127 DGGTRTASITGAYVALVDAIEDARAKGLIAKNAQPLLDSIAAVSVGVVGGLPVLDLDYPE 186
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAER--ATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
DST D D N VMT SG VEVQG+AE A F +D +L+LA A L QK +
Sbjct: 187 DSTADTDMNVVMTGSGRYVEVQGTAEGADAAFDRDRLNELLDLAAAGCATLTLEQKKSLD 246
Query: 240 N 240
Sbjct: 247 E 247
>gi|167836045|ref|ZP_02462928.1| polynucleotide phosphorylase/polyadenylase [Burkholderia
thailandensis MSMB43]
Length = 706
Score = 167 bits (422), Expect = 1e-39, Method: Composition-based stats.
Identities = 47/242 (19%), Positives = 93/242 (38%), Gaps = 18/242 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHG 57
R+ GR +R I + V GS L G+T L AT +E++ +
Sbjct: 315 RIDGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQALVVATLGTKGDEQIIDALEGEYRD 374
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y M P +TG + + R+ G + RAL + + + I + +
Sbjct: 375 RFMLHYNMPPFATGETGRVGSPKRREIGHGRL----AKRALVACLPSADEFGYSIRVVSE 430
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ G +AL D M+ + +L+G+ A+ +
Sbjct: 431 ITESNGSSSMASVCGGCLALMDAGVPMKAHVAGIAMGLILEGNKFAVLTD---------I 481
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T G + +Q + +++ L AK+ ++ K+
Sbjct: 482 LGDEDHLGDMDFKVAGTAEG-VTALQMDIKIQGITKEIMQVALAQAKEGRMHILGKMKEA 540
Query: 238 IS 239
++
Sbjct: 541 VA 542
Score = 96.5 bits (238), Expect = 3e-18, Method: Composition-based stats.
Identities = 34/233 (14%), Positives = 71/233 (30%), Gaps = 27/233 (11%)
Query: 13 EISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT----KHGWITAEYGMLP 67
++ L +++ A G+ +V DT +L T + + T G +P
Sbjct: 10 KVRLETGEIARQASGAVVVDIEDTVVLATVVGAKSAKPGQDFFPLTVDYIEKTYSAGKIP 69
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R GR R+I R LR + Q++I + +
Sbjct: 70 GGFFRR------EGRPSEHETLTSRLIDRPLRPLFPEGFYNEVQVVIHVLSVNPEIPADI 123
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
A+ GA A G V A + +++ + +
Sbjct: 124 PALIGASAA-------------LAVSGLPFNGPVGAARVAYVNNEYVLNPTRAQIKASRL 170
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
D T+ ++ V+ +E +D + +++ I +++
Sbjct: 171 DLVVAGTER-AVLMVE--SEADQLPEDVMLGAVVFGHEQMQTAIDAIHELVRE 220
>gi|172041146|ref|YP_001800860.1| ribonuclease PH [Corynebacterium urealyticum DSM 7109]
gi|171852450|emb|CAQ05426.1| ribonuclease PH [Corynebacterium urealyticum DSM 7109]
Length = 257
Score = 167 bits (422), Expect = 1e-39, Method: Composition-based stats.
Identities = 112/240 (46%), Positives = 161/240 (67%), Gaps = 2/240 (0%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R GR +Q+R+I +TRR + GS LV+FG+T ++ TA++E VP + R++ GW+TA
Sbjct: 12 RADGRSVDQLRDIRITRRFTTNPAGSVLVEFGNTRVMCTASVELGVPRFKRDSGEGWLTA 71
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
EY MLP +T R+ RE++ G+ GR+ EI R++GRALR+ VDL+ LG I IDCDV+QA
Sbjct: 72 EYAMLPSATHERMPRESMRGKVKGRTHEISRLVGRALRAAVDLTELGENTIAIDCDVLQA 131
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
DGGTRTAAITGA+VAL D L ++++ + L+ VAA+S G++ G +DL Y E
Sbjct: 132 DGGTRTAAITGAYVALADALAYLQE--QGVVPGKPLRAPVAAVSVGIIDGVACLDLPYEE 189
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
DS DVD N VMT +G VE+QG+ E A F + ML+LA+ + LI+LQ+ ++ +
Sbjct: 190 DSRADVDMNVVMTKAGRFVEIQGTGEAAEFDRAELNTMLDLAEGGLHQLIELQERALNTD 249
>gi|332711140|ref|ZP_08431074.1| RNAse PH [Lyngbya majuscula 3L]
gi|332350122|gb|EGJ29728.1| RNAse PH [Lyngbya majuscula 3L]
Length = 234
Score = 167 bits (422), Expect = 1e-39, Method: Composition-based stats.
Identities = 101/234 (43%), Positives = 149/234 (63%), Gaps = 4/234 (1%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R RQ +Q+R I R ++YA GS L G+T +L T T++E+VP ++++T GW+TA
Sbjct: 5 RPDNRQPDQLRPILFEREFTRYAPGSVLAHCGETKVLCTVTVQEEVPRFLKDTGSGWLTA 64
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
EY MLP +T R +R + GR+QEIQR+IGR+LR+ VDL ALG R + +D DVIQA
Sbjct: 65 EYRMLPGATPERQRR--ELLKLSGRTQEIQRLIGRSLRAAVDLKALGERTLTVDADVIQA 122
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
D GTRT +ITG +VAL D + + + + + VAA+S G+L G P +DL+Y E
Sbjct: 123 DAGTRTTSITGGYVALVDAVDKLVKTGVLERSPLIHQ--VAAVSVGLLEGEPFLDLNYIE 180
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
D +VD N VM D I+EVQG+AE +++ +++LA+ I +L++ Q+
Sbjct: 181 DVAAEVDFNVVMNDEMGIIEVQGTAESGAYTRHQLNQLIDLAEKGIKELLEAQR 234
>gi|53725829|ref|YP_103438.1| polynucleotide phosphorylase/polyadenylase [Burkholderia mallei
ATCC 23344]
gi|67642196|ref|ZP_00440956.1| polyribonucleotide nucleotidyltransferase
(Polynucleotidephosphorylase) (PNPase) [Burkholderia
mallei GB8 horse 4]
gi|121601052|ref|YP_992465.1| polynucleotide phosphorylase/polyadenylase [Burkholderia mallei
SAVP1]
gi|124384993|ref|YP_001026732.1| polynucleotide phosphorylase/polyadenylase [Burkholderia mallei
NCTC 10229]
gi|126449416|ref|YP_001079983.1| polynucleotide phosphorylase/polyadenylase [Burkholderia mallei
NCTC 10247]
gi|167000372|ref|ZP_02266190.1| polyribonucleotide nucleotidyltransferase [Burkholderia mallei
PRL-20]
gi|254175718|ref|ZP_04882378.1| polyribonucleotide nucleotidyltransferase [Burkholderia mallei ATCC
10399]
gi|254202114|ref|ZP_04908477.1| polyribonucleotide nucleotidyltransferase [Burkholderia mallei FMH]
gi|254207444|ref|ZP_04913794.1| polyribonucleotide nucleotidyltransferase [Burkholderia mallei JHU]
gi|254359866|ref|ZP_04976136.1| polyribonucleotide nucleotidyltransferase [Burkholderia mallei
2002721280]
gi|81604650|sp|Q62IN1|PNP_BURMA RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|187470944|sp|A3MI97|PNP_BURM7 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|187470945|sp|A2S463|PNP_BURM9 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|187470946|sp|A1V2L2|PNP_BURMS RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|52429252|gb|AAU49845.1| polyribonucleotide nucleotidyltransferase [Burkholderia mallei ATCC
23344]
gi|121229862|gb|ABM52380.1| polyribonucleotide nucleotidyltransferase [Burkholderia mallei
SAVP1]
gi|124293013|gb|ABN02282.1| polyribonucleotide nucleotidyltransferase [Burkholderia mallei NCTC
10229]
gi|126242286|gb|ABO05379.1| polyribonucleotide nucleotidyltransferase [Burkholderia mallei NCTC
10247]
gi|147746361|gb|EDK53438.1| polyribonucleotide nucleotidyltransferase [Burkholderia mallei FMH]
gi|147751338|gb|EDK58405.1| polyribonucleotide nucleotidyltransferase [Burkholderia mallei JHU]
gi|148029106|gb|EDK87011.1| polyribonucleotide nucleotidyltransferase [Burkholderia mallei
2002721280]
gi|160696762|gb|EDP86732.1| polyribonucleotide nucleotidyltransferase [Burkholderia mallei ATCC
10399]
gi|238523292|gb|EEP86731.1| polyribonucleotide nucleotidyltransferase
(Polynucleotidephosphorylase) (PNPase) [Burkholderia
mallei GB8 horse 4]
gi|243063706|gb|EES45892.1| polyribonucleotide nucleotidyltransferase [Burkholderia mallei
PRL-20]
Length = 713
Score = 167 bits (422), Expect = 1e-39, Method: Composition-based stats.
Identities = 48/242 (19%), Positives = 93/242 (38%), Gaps = 18/242 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHG 57
R+ GR +R I + V GS L G+T L AT +E++ +
Sbjct: 322 RIDGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQALVVATLGTKGDEQIIDALEGEYRE 381
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y M P +TG + + R+ G + RAL + + + I + +
Sbjct: 382 RFMLHYNMPPFATGETGRVGSPKRREIGHGRL----AKRALVACLPSADEFGYSIRVVSE 437
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ G +AL D M+ + +L+G+ A+ +
Sbjct: 438 ITESNGSSSMASVCGGCLALMDAGVPMKAHVAGIAMGLILEGNKFAVLTD---------I 488
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T G + +Q + +++ L AK+ ++ KD
Sbjct: 489 LGDEDHLGDMDFKVAGTADG-VTALQMDIKIQGITKEIMQVALAQAKEGRMHILGKMKDA 547
Query: 238 IS 239
++
Sbjct: 548 VA 549
Score = 98.0 bits (242), Expect = 1e-18, Method: Composition-based stats.
Identities = 34/233 (14%), Positives = 71/233 (30%), Gaps = 27/233 (11%)
Query: 13 EISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT----KHGWITAEYGMLP 67
++ L +++ A G+ +V DT +L T + + T G +P
Sbjct: 17 KVRLETGEIARQASGAVIVDIEDTVVLATVVGAKSAKPGQDFFPLTVDYIEKTYSAGKIP 76
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R GR R+I R LR + Q++I + +
Sbjct: 77 GGFFRR------EGRPSEHETLTSRLIDRPLRPLFPEGFYNEVQVVIHVLSVNPEIPADI 130
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
A+ GA A G V A + +++ + +
Sbjct: 131 PALIGASAA-------------LAVSGLPFNGPVGAARVAYVNNEYVLNPTREQIKASRL 177
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
D T+ ++ V+ +E +D + +++ I +++
Sbjct: 178 DLVVAGTER-AVLMVE--SEADQLPEDVMLGAVVFGHEQMQTAIDAIHELVRE 227
>gi|257884710|ref|ZP_05664363.1| ribonuclease PH/Ham1 [Enterococcus faecium 1,231,501]
gi|257820548|gb|EEV47696.1| ribonuclease PH/Ham1 [Enterococcus faecium 1,231,501]
Length = 451
Score = 167 bits (422), Expect = 1e-39, Method: Composition-based stats.
Identities = 120/239 (50%), Positives = 161/239 (67%), Gaps = 3/239 (1%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR GR+ ++R++ L V KY EGS +++FGDT ++ +AT+E+ VP ++R T GW+T
Sbjct: 1 MRHDGRKAQELRKLELQTNVFKYPEGSVVIRFGDTTVICSATIEDSVPPFLRETGTGWVT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEY MLPR+T R +RE+ G+ GR+ EIQR+IGR+LR+VVDL LG R II+DCDVIQ
Sbjct: 61 AEYSMLPRATSTRNRRESSKGKLSGRTMEIQRLIGRSLRAVVDLEKLGERSIIVDCDVIQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIV-DLDY 179
ADGGTRTA+ITGA+V+L ++ + K +K H+AA+S G+L V DLDY
Sbjct: 121 ADGGTRTASITGAFVSLKLAIEKLLRE--KELSEDPIKEHLAAVSVGILPDGTCVTDLDY 178
Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
EDS VD N VMT+SG VE+QG+ E ATF + ML K+ I DLIK QK +
Sbjct: 179 QEDSAALVDMNLVMTESGKFVEIQGTGEEATFDGEQLNEMLFFGKNAIEDLIKEQKHAL 237
>gi|219850495|ref|YP_002464928.1| ribonuclease PH [Chloroflexus aggregans DSM 9485]
gi|219544754|gb|ACL26492.1| ribonuclease PH [Chloroflexus aggregans DSM 9485]
Length = 250
Score = 167 bits (422), Expect = 1e-39, Method: Composition-based stats.
Identities = 104/230 (45%), Positives = 145/230 (63%), Gaps = 4/230 (1%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+R GR +Q+R I++ + YAEGS L+ +G+T +L TAT+E+ VP W+R + GW+T
Sbjct: 2 VRRDGRAPDQLRPITIEIGAAPYAEGSALIAYGNTRVLCTATIEDGVPAWMRGQQGGWVT 61
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEY MLPR+T R +R GR+QEIQR+IGRALR+ +DL A+G R I IDCDV+Q
Sbjct: 62 AEYAMLPRATLQRSRR--ERNGPSGRTQEIQRLIGRALRAAIDLHAIGERTITIDCDVLQ 119
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+I+G +VAL + H+ + +AA+S GM+ ++DL Y
Sbjct: 120 ADGGTRTASISGGYVALALAVDHLVRS--GAVETYPTLTPLAAVSVGMIQDTLLLDLCYE 177
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADL 230
EDS D+D N VM + VEVQ +AER S+ A+L+LA I +
Sbjct: 178 EDSQADLDCNVVMNINSAFVEVQATAERTPVSRAQLDALLDLAARGIQQI 227
>gi|261377578|ref|ZP_05982151.1| tRNA nucleotidyltransferase [Neisseria cinerea ATCC 14685]
gi|269146325|gb|EEZ72743.1| tRNA nucleotidyltransferase [Neisseria cinerea ATCC 14685]
Length = 242
Score = 167 bits (422), Expect = 1e-39, Method: Composition-based stats.
Identities = 117/239 (48%), Positives = 169/239 (70%), Gaps = 3/239 (1%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+R S R + +R+I +T + +GSCL++ G+T ++ TA+++E VP ++R GW+T
Sbjct: 5 IRTS-RAADSLRDIKITPHFLPHTDGSCLIECGNTKVICTASVDENVPPFLRGKNQGWVT 63
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLP ST +R++REA +G+Q GR+QEIQR+IGR+LR+VVD+ LG RQI+IDCDVIQ
Sbjct: 64 AEYGMLPASTASRMRREASAGKQSGRTQEIQRLIGRSLRAVVDMEKLGERQILIDCDVIQ 123
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+ITGA+VALH + + ++ VAAIS G++ G P++DLDY
Sbjct: 124 ADGGTRTASITGAFVALHIAVGKLISD--GILTENPIREAVAAISVGIVGGVPLLDLDYP 181
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
EDS D D N VMT SG I+E+QG+AE A FS + ++ LA+ I +L++ Q++ +S
Sbjct: 182 EDSGCDSDVNIVMTASGKIIEIQGTAEGAPFSLEELGKLIGLAEQGIRELVRYQQNALS 240
>gi|121635173|ref|YP_975418.1| ribonuclease PH [Neisseria meningitidis FAM18]
gi|161870362|ref|YP_001599532.1| ribonuclease PH [Neisseria meningitidis 053442]
gi|218768484|ref|YP_002342996.1| ribonuclease PH [Neisseria meningitidis Z2491]
gi|304387097|ref|ZP_07369348.1| tRNA nucleotidyltransferase [Neisseria meningitidis ATCC 13091]
gi|21759416|sp|Q9JTN2|RNPH_NEIMA RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|166228298|sp|A1KUT9|RNPH_NEIMF RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|189043768|sp|A9M0T5|RNPH_NEIM0 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|120866879|emb|CAM10638.1| ribonuclease PH [Neisseria meningitidis FAM18]
gi|121052492|emb|CAM08831.1| ribonuclease PH [Neisseria meningitidis Z2491]
gi|161595915|gb|ABX73575.1| ribonuclease PH [Neisseria meningitidis 053442]
gi|304338846|gb|EFM04949.1| tRNA nucleotidyltransferase [Neisseria meningitidis ATCC 13091]
gi|308389647|gb|ADO31967.1| ribonuclease PH [Neisseria meningitidis alpha710]
gi|319410733|emb|CBY91115.1| ribonuclease PH (RNase PH; tRNA nucleotidyltransferase) [Neisseria
meningitidis WUE 2594]
gi|325132653|gb|EGC55339.1| ribonuclease PH [Neisseria meningitidis M6190]
gi|325134681|gb|EGC57321.1| ribonuclease PH [Neisseria meningitidis M13399]
gi|325138569|gb|EGC61132.1| ribonuclease PH [Neisseria meningitidis ES14902]
gi|325198624|gb|ADY94080.1| ribonuclease PH [Neisseria meningitidis G2136]
gi|325201806|gb|ADY97260.1| ribonuclease PH [Neisseria meningitidis M01-240149]
gi|325205751|gb|ADZ01204.1| ribonuclease PH [Neisseria meningitidis M04-240196]
gi|325208441|gb|ADZ03893.1| ribonuclease PH [Neisseria meningitidis NZ-05/33]
Length = 242
Score = 167 bits (422), Expect = 1e-39, Method: Composition-based stats.
Identities = 116/239 (48%), Positives = 169/239 (70%), Gaps = 3/239 (1%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+R+S R + +R+I +T + +GSCL++ G+T ++ TA+++E VP ++R GW+T
Sbjct: 5 IRIS-RAADSLRDIKITPHFLPHTDGSCLIECGNTKVICTASIDENVPPFLRGKNQGWVT 63
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLP ST +R++REA +G+Q GR+QEIQR+IGR+LR+VVD+ LG RQI+IDCDVIQ
Sbjct: 64 AEYGMLPASTASRMRREASAGKQSGRTQEIQRLIGRSLRAVVDMEKLGERQILIDCDVIQ 123
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+ITGA+VAL + + ++ VAA+S G++ G P++DLDY
Sbjct: 124 ADGGTRTASITGAFVALQIAVGKLVSD--GILSENPIREAVAAVSVGVVNGVPLLDLDYP 181
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
EDS D D N VMT SG I+E+QG+AE A FS D ++ LA+ I +L++ Q++ +S
Sbjct: 182 EDSGCDSDVNIVMTASGKIIEIQGTAEDAPFSLDELGKLVALAQKGIGELLQHQQNALS 240
>gi|254456606|ref|ZP_05070035.1| polyribonucleotide nucleotidyltransferase [Candidatus Pelagibacter
sp. HTCC7211]
gi|207083608|gb|EDZ61034.1| polyribonucleotide nucleotidyltransferase [Candidatus Pelagibacter
sp. HTCC7211]
Length = 690
Score = 167 bits (422), Expect = 1e-39, Method: Composition-based stats.
Identities = 45/242 (18%), Positives = 85/242 (35%), Gaps = 19/242 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR + +R I V GS L G+T + ATL +E+ + +
Sbjct: 313 RIDGRGLSDVRPIECEVGVLPRTHGSALFTRGETQAIVVATLGTSDDEQRIESLDGLQRE 372
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + R+ G + RA+ S + I +
Sbjct: 373 RFMLHYNFPPFSVGETGRIGTGR-REIGHGKL----AWRAINSSLPSKEAFPYTFRIVSE 427
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A + G +AL D +++ + + +G ++ +
Sbjct: 428 ITESNGSSSMATVCGTSLALMDAGVPIKEPVAGIAMGLIKEGDDFSVLSD---------I 478
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T G I +Q + + + L+ AKD ++
Sbjct: 479 LGDEDHLGDMDFKVAGTKDG-ITSLQMDIKITGITFEIMEQALSQAKDGRVHILGEMNKA 537
Query: 238 IS 239
+S
Sbjct: 538 LS 539
Score = 107 bits (267), Expect = 1e-21, Method: Composition-based stats.
Identities = 36/229 (15%), Positives = 73/229 (31%), Gaps = 19/229 (8%)
Query: 13 EISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG 71
+ISL V++ A+G+ + G+T +L T +KV + E
Sbjct: 15 KISLETGKVARQADGAIIASCGETVILATVVGAKKVNPDMDYFPLSVNYQEKYYAGGKIP 74
Query: 72 NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAIT 131
R I R+I R +R + + Q++ + AIT
Sbjct: 75 --GGYFKREARPTESETLISRLIDRPIRPLFPDAFKNEVQLLPTVISYDKENQPDILAIT 132
Query: 132 GAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANF 191
+ A G V A G + G I++ E +D
Sbjct: 133 ASSAA-------------LAISGMPFMGPVGASRVGFVDGKYILNPSKAELENSSLDLVV 179
Query: 192 VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
T ++ V+ +E +++ + + +I++ +++
Sbjct: 180 AGTKD-AVLMVE--SEANGLTEEEMLNAVKFGHEGFVPVIEMVEELAKE 225
>gi|53718843|ref|YP_107829.1| polynucleotide phosphorylase/polyadenylase [Burkholderia
pseudomallei K96243]
gi|76810240|ref|YP_332840.1| polynucleotide phosphorylase/polyadenylase [Burkholderia
pseudomallei 1710b]
gi|126439036|ref|YP_001058334.1| polynucleotide phosphorylase/polyadenylase [Burkholderia
pseudomallei 668]
gi|126454918|ref|YP_001065573.1| polynucleotide phosphorylase/polyadenylase [Burkholderia
pseudomallei 1106a]
gi|134283923|ref|ZP_01770619.1| polyribonucleotide nucleotidyltransferase [Burkholderia
pseudomallei 305]
gi|167718839|ref|ZP_02402075.1| polynucleotide phosphorylase/polyadenylase [Burkholderia
pseudomallei DM98]
gi|167737848|ref|ZP_02410622.1| polynucleotide phosphorylase/polyadenylase [Burkholderia
pseudomallei 14]
gi|167815032|ref|ZP_02446712.1| polynucleotide phosphorylase/polyadenylase [Burkholderia
pseudomallei 91]
gi|167823448|ref|ZP_02454919.1| polynucleotide phosphorylase/polyadenylase [Burkholderia
pseudomallei 9]
gi|167845000|ref|ZP_02470508.1| polynucleotide phosphorylase/polyadenylase [Burkholderia
pseudomallei B7210]
gi|167893541|ref|ZP_02480943.1| polynucleotide phosphorylase/polyadenylase [Burkholderia
pseudomallei 7894]
gi|167901988|ref|ZP_02489193.1| polynucleotide phosphorylase/polyadenylase [Burkholderia
pseudomallei NCTC 13177]
gi|167910223|ref|ZP_02497314.1| polynucleotide phosphorylase/polyadenylase [Burkholderia
pseudomallei 112]
gi|167918256|ref|ZP_02505347.1| polynucleotide phosphorylase/polyadenylase [Burkholderia
pseudomallei BCC215]
gi|217419798|ref|ZP_03451304.1| polyribonucleotide nucleotidyltransferase [Burkholderia
pseudomallei 576]
gi|226195372|ref|ZP_03790961.1| polyribonucleotide nucleotidyltransferase [Burkholderia
pseudomallei Pakistan 9]
gi|237811578|ref|YP_002896029.1| polyribonucleotide nucleotidyltransferase [Burkholderia
pseudomallei MSHR346]
gi|242315054|ref|ZP_04814070.1| polyribonucleotide nucleotidyltransferase [Burkholderia
pseudomallei 1106b]
gi|254190554|ref|ZP_04897061.1| polyribonucleotide nucleotidyltransferase [Burkholderia
pseudomallei Pasteur 52237]
gi|254258157|ref|ZP_04949211.1| polyribonucleotide nucleotidyltransferase [Burkholderia
pseudomallei 1710a]
gi|81380050|sp|Q63VN7|PNP_BURPS RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|123599745|sp|Q3JUB3|PNP_BURP1 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|187470947|sp|A3NTA2|PNP_BURP0 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|187470948|sp|A3N7L3|PNP_BURP6 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|52209257|emb|CAH35202.1| polyribonucleotide nucleotidyltransferase [Burkholderia
pseudomallei K96243]
gi|76579693|gb|ABA49168.1| polyribonucleotide nucleotidyltransferase [Burkholderia
pseudomallei 1710b]
gi|126218529|gb|ABN82035.1| polyribonucleotide nucleotidyltransferase [Burkholderia
pseudomallei 668]
gi|126228560|gb|ABN92100.1| polyribonucleotide nucleotidyltransferase [Burkholderia
pseudomallei 1106a]
gi|134244712|gb|EBA44810.1| polyribonucleotide nucleotidyltransferase [Burkholderia
pseudomallei 305]
gi|157938229|gb|EDO93899.1| polyribonucleotide nucleotidyltransferase [Burkholderia
pseudomallei Pasteur 52237]
gi|217397102|gb|EEC37118.1| polyribonucleotide nucleotidyltransferase [Burkholderia
pseudomallei 576]
gi|225932574|gb|EEH28572.1| polyribonucleotide nucleotidyltransferase [Burkholderia
pseudomallei Pakistan 9]
gi|237503430|gb|ACQ95748.1| polyribonucleotide nucleotidyltransferase [Burkholderia
pseudomallei MSHR346]
gi|242138293|gb|EES24695.1| polyribonucleotide nucleotidyltransferase [Burkholderia
pseudomallei 1106b]
gi|254216846|gb|EET06230.1| polyribonucleotide nucleotidyltransferase [Burkholderia
pseudomallei 1710a]
Length = 713
Score = 167 bits (422), Expect = 1e-39, Method: Composition-based stats.
Identities = 48/242 (19%), Positives = 93/242 (38%), Gaps = 18/242 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHG 57
R+ GR +R I + V GS L G+T L AT +E++ +
Sbjct: 322 RIDGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQALVVATLGTKGDEQIIDALEGEYRE 381
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y M P +TG + + R+ G + RAL + + + I + +
Sbjct: 382 RFMLHYNMPPFATGETGRVGSPKRREIGHGRL----AKRALVACLPSADEFGYSIRVVSE 437
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ G +AL D M+ + +L+G+ A+ +
Sbjct: 438 ITESNGSSSMASVCGGCLALMDAGVPMKAHVAGIAMGLILEGNKFAVLTD---------I 488
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T G + +Q + +++ L AK+ ++ KD
Sbjct: 489 LGDEDHLGDMDFKVAGTADG-VTALQMDIKIQGITKEIMQVALAQAKEGRMHILGKMKDA 547
Query: 238 IS 239
++
Sbjct: 548 VA 549
Score = 97.6 bits (241), Expect = 1e-18, Method: Composition-based stats.
Identities = 34/233 (14%), Positives = 71/233 (30%), Gaps = 27/233 (11%)
Query: 13 EISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT----KHGWITAEYGMLP 67
++ L +++ A G+ +V DT +L T + + T G +P
Sbjct: 17 KVRLETGEIARQASGAVIVDIEDTVVLATVVGAKSAKPGQDFFPLTVDYIEKTYSAGKIP 76
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R GR R+I R LR + Q++I + +
Sbjct: 77 GGFFRR------EGRPSEHETLTSRLIDRPLRPLFPEGFYNEVQVVIHVLSVNPEIPADI 130
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
A+ GA A G V A + +++ + +
Sbjct: 131 PALIGASAA-------------LAVSGLPFNGPVGAARVAYVNNEYVLNPTREQIKASRL 177
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
D T+ ++ V+ +E +D + +++ I +++
Sbjct: 178 DLVVAGTER-AVLMVE--SEADQLPEDVMLGAVVFGHEQMQTAIDAIHELVRE 227
>gi|56750485|ref|YP_171186.1| ribonuclease PH [Synechococcus elongatus PCC 6301]
gi|81299882|ref|YP_400090.1| ribonuclease PH [Synechococcus elongatus PCC 7942]
gi|61215786|sp|Q5N4V3|RNPH_SYNP6 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|123557014|sp|Q31PB6|RNPH_SYNE7 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|56685444|dbj|BAD78666.1| hypothetical protein [Synechococcus elongatus PCC 6301]
gi|81168763|gb|ABB57103.1| RNAse PH [Synechococcus elongatus PCC 7942]
Length = 238
Score = 167 bits (422), Expect = 1e-39, Method: Composition-based stats.
Identities = 99/239 (41%), Positives = 146/239 (61%), Gaps = 4/239 (1%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+R GR+ +Q+R I+ RR +++ GS L +FG T +L T T++ VP W+ GW+T
Sbjct: 4 IRPDGRRPDQLRAIAFQRRFTQFPAGSVLAQFGQTQVLCTVTIQAGVPRWLTGQGQGWLT 63
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEY MLP +T +R RE + GR+QEIQR+IGR+LR+ +DL LG R ++ID DV+Q
Sbjct: 64 AEYRMLPGATPDRQSREW--LKLSGRTQEIQRLIGRSLRAAIDLKKLGERTLLIDADVLQ 121
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
AD GTRT AI G+WVAL D + + + ++ +AA+S ++ G +D DY
Sbjct: 122 ADAGTRTTAINGSWVALQDAIAQLIAQGELTES--PIQRSIAAVSVALIGGEAFLDPDYP 179
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
ED DVD N VM D G ++E+QG+AE FS+ +L+LA+ IA + Q + +
Sbjct: 180 EDVQADVDCNVVMGDRGELIEIQGTAEANPFSRTQLNHILDLAEQGIAQIQAAQLEALR 238
>gi|269128062|ref|YP_003301432.1| ribonuclease PH [Thermomonospora curvata DSM 43183]
gi|268313020|gb|ACY99394.1| ribonuclease PH [Thermomonospora curvata DSM 43183]
Length = 239
Score = 167 bits (422), Expect = 2e-39, Method: Composition-based stats.
Identities = 109/239 (45%), Positives = 152/239 (63%), Gaps = 2/239 (0%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R R +Q+R + + R +AEGS L++FG T +L A++++ VP W R++ GW+TA
Sbjct: 3 RPDDRAPDQLRPVRIQRNWLDHAEGSVLIEFGATRVLCAASVQDSVPRWRRDSGLGWVTA 62
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
EY MLPR+T R +RE+V GR GGR+QEI R+IGR+LR+ VD LG +++DCDV+QA
Sbjct: 63 EYAMLPRATHTRGERESVKGRLGGRTQEISRLIGRSLRACVDFKELGENTVVLDCDVLQA 122
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
DGGTRTAAITGA+VAL D + M + L VAA+S G++ G P +DL Y E
Sbjct: 123 DGGTRTAAITGAYVALADAVAWMRERE--LIKGDPLICSVAAVSVGVVDGEPRLDLCYAE 180
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
D D N V T G VEVQG+AE F + A+L+LA A+L +LQ++ ++
Sbjct: 181 DVEAGTDMNVVCTGDGKFVEVQGTAEGQPFDRAELDALLDLAAGGCAELTRLQQEALNR 239
>gi|254298529|ref|ZP_04965981.1| polyribonucleotide nucleotidyltransferase [Burkholderia
pseudomallei 406e]
gi|157808347|gb|EDO85517.1| polyribonucleotide nucleotidyltransferase [Burkholderia
pseudomallei 406e]
Length = 713
Score = 167 bits (422), Expect = 2e-39, Method: Composition-based stats.
Identities = 48/242 (19%), Positives = 93/242 (38%), Gaps = 18/242 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHG 57
R+ GR +R I + V GS L G+T L AT +E++ +
Sbjct: 322 RIDGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQALVVATLGTKGDEQIIDALEGEYRE 381
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y M P +TG + + R+ G + RAL + + + I + +
Sbjct: 382 RFMLHYNMPPFATGETGRVGSPKRREIGHGRL----AKRALVACLPSADEFGYSIRVVSE 437
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ G +AL D M+ + +L+G+ A+ +
Sbjct: 438 ITESNGSSSMASVCGGCLALMDAGVPMKAHVAGIAMGLILEGNKFAVLTD---------I 488
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T G + +Q + +++ L AK+ ++ KD
Sbjct: 489 LGDEDHLGDMDFKVAGTADG-VTALQMDIKIQGITKEIMQVALAQAKEGRMHILGKMKDA 547
Query: 238 IS 239
++
Sbjct: 548 VA 549
Score = 98.0 bits (242), Expect = 1e-18, Method: Composition-based stats.
Identities = 35/233 (15%), Positives = 72/233 (30%), Gaps = 27/233 (11%)
Query: 13 EISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT----KHGWITAEYGMLP 67
++ L +++ A G+ +V DT +L T + + T G +P
Sbjct: 17 KVRLETGEIARQASGAVIVDIEDTVVLATVVGAKSAKPGQDFFPLTVDYIEKTYSAGKIP 76
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R GR R+I R LR + Q++I + +
Sbjct: 77 GGFFRR------EGRPSEHETLTSRLIDRPLRPLFPEGFYNEVQVVIHVLSVNPEIPADI 130
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
A+ GA A G V A + +++ + T +
Sbjct: 131 PALIGASAA-------------LAVSGLPFNGPVGAARVAYVNNEYVLNPTREQIKTSRL 177
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
D T+ ++ V+ +E +D + +++ I +++
Sbjct: 178 DLVVAGTER-AVLMVE--SEADQLPEDVMLGAVVFGHEQMQTAIDAIHELVRE 227
>gi|145593656|ref|YP_001157953.1| ribonuclease PH [Salinispora tropica CNB-440]
gi|189043773|sp|A4X3X5|RNPH_SALTO RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|145302993|gb|ABP53575.1| RNAse PH [Salinispora tropica CNB-440]
Length = 241
Score = 167 bits (422), Expect = 2e-39, Method: Composition-based stats.
Identities = 114/239 (47%), Positives = 159/239 (66%), Gaps = 1/239 (0%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R GR + +R ++LTR S + EGS LV+FG T +L TA++ E VP W + + GW+TA
Sbjct: 3 RPDGRLPDHLRPVTLTRGWSTHPEGSVLVEFGATRVLCTASVTEGVPRWRKGSGLGWVTA 62
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
EY MLPR+T R RE+V GR GGR+ EI R+IGR+LR+ +DL ALG I++DCDV+QA
Sbjct: 63 EYAMLPRATNTRSDRESVKGRVGGRTHEISRLIGRSLRASIDLKALGENSIVLDCDVLQA 122
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKF-QLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
DGGTRTAAITGA+VALHD + + + + V+ VAA+S G++ G P +DL+Y
Sbjct: 123 DGGTRTAAITGAYVALHDAVTWLAARRSLAGRPETVMHRSVAAVSVGVVAGEPRLDLNYA 182
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
ED++ +VD N V T +G VEVQG+ E FS+ A+L+LA +L + Q+ +S
Sbjct: 183 EDASAEVDLNVVCTGAGDFVEVQGTGEAGVFSRGQLDALLDLAVAGCVELAEAQRKALS 241
>gi|325570405|ref|ZP_08146182.1| ribonuclease PH/Ham1 protein [Enterococcus casseliflavus ATCC
12755]
gi|325156615|gb|EGC68792.1| ribonuclease PH/Ham1 protein [Enterococcus casseliflavus ATCC
12755]
Length = 450
Score = 167 bits (422), Expect = 2e-39, Method: Composition-based stats.
Identities = 117/239 (48%), Positives = 160/239 (66%), Gaps = 3/239 (1%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR GR+E +R +++ V K+ EGS ++ FGDT ++ +AT+E++VP ++R+T GWIT
Sbjct: 1 MRHDGRKETMLRPVNIQTNVYKHPEGSVVISFGDTTVICSATIEDRVPPFLRDTGKGWIT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEY MLPR+T R +RE+ G+ GR+ EIQR+I R+LR+VVDL LG R I++DCDV+Q
Sbjct: 61 AEYSMLPRATNTRNRRESAKGKLSGRTMEIQRLIARSLRAVVDLEKLGERSIVVDCDVVQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIV-DLDY 179
ADGGTRTA+ITGA+VAL + + +K +K H+AAIS G+L V DLDY
Sbjct: 121 ADGGTRTASITGAFVALRLAIDTL--LRDKALTEDPIKEHLAAISVGILPDGTCVTDLDY 178
Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
EDS+ VD N VMT+SG VE+QG+ E ATF ML K I +LI QK+ +
Sbjct: 179 QEDSSAAVDMNLVMTESGRFVELQGTGEEATFDGQQLNEMLIYGKTAIEELIAYQKEAL 237
>gi|254195065|ref|ZP_04901494.1| polyribonucleotide nucleotidyltransferase [Burkholderia
pseudomallei S13]
gi|169651813|gb|EDS84506.1| polyribonucleotide nucleotidyltransferase [Burkholderia
pseudomallei S13]
Length = 713
Score = 167 bits (422), Expect = 2e-39, Method: Composition-based stats.
Identities = 49/242 (20%), Positives = 94/242 (38%), Gaps = 18/242 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHG 57
R+ GR +R I + V GS L G+T L AT +E++ +
Sbjct: 322 RIDGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQALVVATLGTKGDEQIIDALEGEYRE 381
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y M P +TG + + R+ G + RAL + + + I + +
Sbjct: 382 RFMLHYNMPPFATGETGRVGSPKRREIGHGRL----AKRALVACLPSADEFGYSIRVVSE 437
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ G +AL D M+ + +L+G+ A+ +
Sbjct: 438 ITESNGSSSMASVCGGCLALMDAGVPMKAHVAGIAMGLILEGNKFAVLTD---------I 488
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D V T G + +Q + +++ L AK+ ++ KD
Sbjct: 489 LGDEDHLGDMDFKVVGTADG-VTALQMDIKIQGITKEIMQVALAQAKEGRMHILGKMKDA 547
Query: 238 IS 239
++
Sbjct: 548 VA 549
Score = 97.6 bits (241), Expect = 1e-18, Method: Composition-based stats.
Identities = 34/233 (14%), Positives = 71/233 (30%), Gaps = 27/233 (11%)
Query: 13 EISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT----KHGWITAEYGMLP 67
++ L +++ A G+ +V DT +L T + + T G +P
Sbjct: 17 KVRLETGEIARQASGAVIVDIEDTVVLATVVGAKSAKPGQDFFPLTVDYIEKTYSAGKIP 76
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R GR R+I R LR + Q++I + +
Sbjct: 77 GGFFRR------EGRPSEHETLTSRLIDRPLRPLFPEGFYNEVQVVIHVLSVNPEIPADI 130
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
A+ GA A G V A + +++ + +
Sbjct: 131 PALIGASAA-------------LAVSGLPFNGPVGAARVAYVNNEYVLNPTREQIKASRL 177
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
D T+ ++ V+ +E +D + +++ I +++
Sbjct: 178 DLVVAGTER-AVLMVE--SEADQLPEDVMLGAVVFGHEQMQTAIDAIHELVRE 227
>gi|254468592|ref|ZP_05081998.1| polyribonucleotide nucleotidyltransferase [beta proteobacterium
KB13]
gi|207087402|gb|EDZ64685.1| polyribonucleotide nucleotidyltransferase [beta proteobacterium
KB13]
Length = 710
Score = 166 bits (421), Expect = 2e-39, Method: Composition-based stats.
Identities = 46/243 (18%), Positives = 94/243 (38%), Gaps = 18/243 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +R I ++ V GS L G+T L ATL + ++ ++
Sbjct: 320 RIDGRDTRTVRPIEISTSVLPRTHGSALFTRGETQALAVATLGTPRDAQIIDALQGEYTD 379
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P STG + + R+ G + RAL +V+ I + +
Sbjct: 380 RFMLHYNFPPFSTGETGRVGSPKRREIGHGRL----AKRALLAVLPEQEDFDYTIRLVSE 435
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+++++G + A++ G +A+ D ++ + + + + AI +
Sbjct: 436 IMESNGSSSMASVCGGCMAMLDAGVPLKSHVAGIAMGLIKEDNRVAILTD---------I 486
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D +++G I +Q + + + L AK+ ++ L K
Sbjct: 487 LGDEDHLGDMDFKVAGSENG-ITALQMDIKIDGITTEIMQVALKQAKEGREHILDLMKKA 545
Query: 238 ISN 240
+ +
Sbjct: 546 LKS 548
Score = 111 bits (276), Expect = 1e-22, Method: Composition-based stats.
Identities = 43/229 (18%), Positives = 77/229 (33%), Gaps = 27/229 (11%)
Query: 13 EISLTRR-VSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGMLP 67
E+ L V++ A+G+ +V +G+T +L T +E + + T G +P
Sbjct: 19 ELKLETGEVARQADGAVMVSYGETVVLVTVVGNQNVKEGQDFFPLTVDYQEKTYAAGKIP 78
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R GR + R+I R LR + QI+ ++
Sbjct: 79 GGFFKR------EGRPSENEILVCRLIDRPLRPLFPKGFYNDVQIVATVLSSDSEIDADI 132
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
AI GA A G + A G + G +++ + ++
Sbjct: 133 PAIIGASAA-------------LSISGIPFYGPIGATKVGYVDGEYVINPTKTQLQESEL 179
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
D T ++ V+ A+ S+ + D+IKL D
Sbjct: 180 DLVVAGTKD-AVLMVESEAKE--LSEKVMLDAVLAGHKAAKDVIKLIND 225
>gi|157149261|ref|YP_001456580.1| ribonuclease PH [Citrobacter koseri ATCC BAA-895]
gi|166228276|sp|A8ARN1|RNPH_CITK8 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|157086466|gb|ABV16144.1| hypothetical protein CKO_05101 [Citrobacter koseri ATCC BAA-895]
Length = 238
Score = 166 bits (421), Expect = 2e-39, Method: Composition-based stats.
Identities = 123/240 (51%), Positives = 162/240 (67%), Gaps = 2/240 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR +GR NQ+R ++LTR +K+AEGS LV+FGDT +L TA++EE VP +++ GWIT
Sbjct: 1 MRPAGRSANQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWIT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPR+T R REA G+QGGR+ EIQR+I RALR+ VDL LG I +DCDVIQ
Sbjct: 61 AEYGMLPRATHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKTLGEFTITLDCDVIQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+I+GA VAL D L + + +KG VAA+S G++ G + DL+Y
Sbjct: 121 ADGGTRTASISGACVALADALNKLVAN--GKLKTNPMKGMVAAVSVGIVNGEALCDLEYV 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
EDS + D N VMT+ G I+EVQG+AE FS + +L LA+ I ++ QK + N
Sbjct: 179 EDSAAETDMNVVMTEDGRIIEVQGTAEGEPFSHEELLTLLALARGGIESIVATQKAALEN 238
>gi|254181191|ref|ZP_04887788.1| polyribonucleotide nucleotidyltransferase [Burkholderia
pseudomallei 1655]
gi|184211729|gb|EDU08772.1| polyribonucleotide nucleotidyltransferase [Burkholderia
pseudomallei 1655]
Length = 713
Score = 166 bits (421), Expect = 2e-39, Method: Composition-based stats.
Identities = 48/242 (19%), Positives = 93/242 (38%), Gaps = 18/242 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHG 57
R+ GR +R I + V GS L G+T L AT +E++ +
Sbjct: 322 RIDGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQALVVATLGTKGDEQIIDALEGEYRE 381
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y M P +TG + + R+ G + RAL + + + I + +
Sbjct: 382 RFMLHYNMPPFATGETGRVGSPKRREIGHGRL----AKRALVACLPSADEFGYSIRVVSE 437
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ G +AL D M+ + +L+G+ A+ +
Sbjct: 438 ITESNGSSSMASVCGGCLALMDAGVPMKAHVAGIAMGLILEGNKFAVLTD---------I 488
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T G + +Q + +++ L AK+ ++ KD
Sbjct: 489 LGDEDHLGDMDFKVAGTADG-VTALQMDIKIQGITKEIMQVALAQAKEGRMHILGKMKDA 547
Query: 238 IS 239
++
Sbjct: 548 VA 549
Score = 97.6 bits (241), Expect = 1e-18, Method: Composition-based stats.
Identities = 34/233 (14%), Positives = 71/233 (30%), Gaps = 27/233 (11%)
Query: 13 EISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT----KHGWITAEYGMLP 67
++ L +++ A G+ +V DT +L T + + T G +P
Sbjct: 17 KVRLETGEIARQASGAVIVDIEDTVVLATVVGAKSAKPGQDFFPLTVDYIEKTYSAGKIP 76
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R GR R+I R LR + Q++I + +
Sbjct: 77 GGFFRR------EGRPSEHETLTSRLIDRPLRPLFPEGFYNEVQVVIHVLSVNPEIPADI 130
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
A+ GA A G V A + +++ + +
Sbjct: 131 PALIGASAA-------------LAVSGLPFNGPVGAARVAYVNNEYVLNPTREQIKASRL 177
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
D T+ ++ V+ +E +D + +++ I +++
Sbjct: 178 DLVVAGTER-AVLMVE--SEADQLPEDVMLGAVVFGHEQMQTAIDAIHELVRE 227
>gi|42524118|ref|NP_969498.1| ribonuclease PH [Bdellovibrio bacteriovorus HD100]
gi|61215946|sp|Q6MJR9|RNPH_BDEBA RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|39576326|emb|CAE80491.1| ribonuclease PH [Bdellovibrio bacteriovorus HD100]
Length = 243
Score = 166 bits (421), Expect = 2e-39, Method: Composition-based stats.
Identities = 121/240 (50%), Positives = 159/240 (66%), Gaps = 4/240 (1%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR GR +Q+R I +T VS+YAEGS +V+FG T +L TAT E K P W+ T GWIT
Sbjct: 1 MRADGRLFDQLRNIKITPNVSEYAEGSAIVEFGRTKVLCTATYESKAPSWLLGTGAGWIT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPRST R++R+ GGR+QEI R+IGR+LR+ VDL LG +QIIIDCDV+
Sbjct: 61 AEYGMLPRSTHTRIRRDKSMT--GGRTQEISRLIGRSLRAAVDLKQLGEKQIIIDCDVLN 118
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA++TG +VAL L+ + S + L +V+AIS G+ G ++DL+Y
Sbjct: 119 ADGGTRTASVTGGFVALALALKKLHAVS--EIKTLPLINYVSAISVGLHEGQILLDLNYD 176
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
EDS I D NFVMTD G VEVQG+AE F++D F M+++A+ +L Q V+
Sbjct: 177 EDSAIGTDMNFVMTDKGQFVEVQGTAEHVPFTRDQLFKMMDVAEKGCRELFIHQASVMGE 236
>gi|240170903|ref|ZP_04749562.1| ribonuclease PH [Mycobacterium kansasii ATCC 12478]
Length = 259
Score = 166 bits (421), Expect = 2e-39, Method: Composition-based stats.
Identities = 108/238 (45%), Positives = 154/238 (64%), Gaps = 1/238 (0%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R GR ++++R + +TR ++ GS L++FG T +L TA++ E VP W + + GW+TA
Sbjct: 4 REDGRLDDELRPVVITRGFTENPAGSVLIEFGRTKVLCTASVTEGVPRWRKGSGVGWLTA 63
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
EY MLP +T R RE+V GR GGR+QEI R++GR+LR+ +DL+ALG I +DCDV+QA
Sbjct: 64 EYAMLPSATHTRSDRESVKGRVGGRTQEISRLVGRSLRACIDLAALGENTIAVDCDVLQA 123
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
DGGTRTAAITGA+VAL D + K + L +AAIS G++ G VDL Y E
Sbjct: 124 DGGTRTAAITGAYVALADA-VTYLAAAGKLSDPRPLSCAIAAISVGVVDGRIRVDLPYEE 182
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
DS +VD N V TD+G +VE+QG+ E ATF + +L++A L Q++ ++
Sbjct: 183 DSRAEVDMNVVATDTGTLVEIQGTGEGATFPRSTLDKLLDMALGACDKLFAAQREALA 240
>gi|126652649|ref|ZP_01724810.1| ribonuclease PH [Bacillus sp. B14905]
gi|126590498|gb|EAZ84616.1| ribonuclease PH [Bacillus sp. B14905]
Length = 248
Score = 166 bits (421), Expect = 2e-39, Method: Composition-based stats.
Identities = 106/240 (44%), Positives = 149/240 (62%), Gaps = 1/240 (0%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R GR +++R + + + EGS L++ G+T ++ TAT+E+KVP ++R GWITA
Sbjct: 3 RFDGRMADELRPVKMVGEYLLHPEGSVLIQVGNTKVICTATIEDKVPGFLRGQGKGWITA 62
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
EY MLPR+T R RE+ G+ GR+ EIQR+IGRALR+VVDL ALG R + IDCDVIQA
Sbjct: 63 EYSMLPRATAQRTPRESSRGKVNGRTMEIQRLIGRALRAVVDLEALGERTVWIDCDVIQA 122
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
DGGTRTA+ITGA+VA+ + + F V A + ++DL+Y E
Sbjct: 123 DGGTRTASITGAFVAMTQAIAKFAEEKP-FVKFPVTDFLAATSVGIVEEQGAVLDLNYVE 181
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
D VD N VMT +G VE+QG+ E ATFS++ +L L + I L++LQK ++ +
Sbjct: 182 DVAAAVDMNIVMTGAGRFVELQGTGEEATFSREELNDLLALGEKGIQQLVELQKTALAEQ 241
>gi|293374133|ref|ZP_06620467.1| tRNA nucleotidyltransferase [Turicibacter sanguinis PC909]
gi|325837445|ref|ZP_08166427.1| tRNA nucleotidyltransferase [Turicibacter sp. HGF1]
gi|292647236|gb|EFF65212.1| tRNA nucleotidyltransferase [Turicibacter sanguinis PC909]
gi|325490977|gb|EGC93275.1| tRNA nucleotidyltransferase [Turicibacter sp. HGF1]
Length = 236
Score = 166 bits (421), Expect = 2e-39, Method: Composition-based stats.
Identities = 111/237 (46%), Positives = 152/237 (64%), Gaps = 2/237 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR + R+ N++R + + EG+ L+ G+T ++ TAT+E K+P ++R GWIT
Sbjct: 1 MRTNERKNNELRPVEFIPNYIMHPEGAVLISVGNTKVICTATIENKLPPFMRGQGKGWIT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEY MLPR+T R RE+ G+ GR+ EIQR+IGR+LR+ VDL LG R I IDCDVIQ
Sbjct: 61 AEYSMLPRATNTRNVRESARGKLSGRTMEIQRLIGRSLRAAVDLEKLGERTIWIDCDVIQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+ITG+ VA+ + + LK H+AAIS G+ G I+DLDY
Sbjct: 121 ADGGTRTASITGSVVAMKLAFDKLVAEGVLKES--PLKEHLAAISVGIKDGEVILDLDYE 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
EDS+ +VD N +MT+SG VE+QG+ E AT+S ML++A I LI+ QK +
Sbjct: 179 EDSSAEVDMNVIMTESGQFVEIQGTGEEATYSHAELLQMLDVASQGIKQLIEAQKQI 235
>gi|296137098|ref|YP_003644340.1| ribonuclease PH [Thiomonas intermedia K12]
gi|294341380|emb|CAZ89797.1| Ribonuclease PH (RNase PH) (tRNA nucleotidyltransferase) [Thiomonas
sp. 3As]
gi|295797220|gb|ADG32010.1| ribonuclease PH [Thiomonas intermedia K12]
Length = 243
Score = 166 bits (421), Expect = 2e-39, Method: Composition-based stats.
Identities = 118/235 (50%), Positives = 158/235 (67%), Gaps = 2/235 (0%)
Query: 5 GRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYG 64
GR + +R I++ R +++AEGS LV FG T +L TA++EE+VP R + GW+TAEYG
Sbjct: 10 GRGLSALRAIAIERHFTRHAEGSVLVAFGHTRVLCTASVEERVPPHKRGSGQGWVTAEYG 69
Query: 65 MLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGG 124
MLPR+T R +REA G+Q GR++EIQR+IGR+LR+V D SALG RQI +DCDV+QADGG
Sbjct: 70 MLPRATHTRGEREAKRGKQQGRTEEIQRLIGRSLRAVFDFSALGERQITLDCDVLQADGG 129
Query: 125 TRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDST 184
TRTAAITGA VA D Q + ++ VAA+S G+L +DLDY EDS
Sbjct: 130 TRTAAITGAAVAAWDACQWLMA--QGRIPQNPMRQLVAAVSVGLLGDDYRLDLDYAEDSQ 187
Query: 185 IDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
D D N V T G ++EVQG+AE A FS+ M++LA+ IA+L+ LQ+ +
Sbjct: 188 CDTDMNVVGTADGALIEVQGTAEGAPFSRQQLDGMIDLAQRGIAELVALQRQALE 242
>gi|16762575|ref|NP_458192.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar Typhi
str. CT18]
gi|16767019|ref|NP_462634.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar
Typhimurium str. LT2]
gi|29144064|ref|NP_807406.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar Typhi
str. Ty2]
gi|56415624|ref|YP_152699.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar
Paratyphi A str. ATCC 9150]
gi|161505731|ref|YP_001572843.1| ribonuclease PH [Salmonella enterica subsp. arizonae serovar
62:z4,z23:-- str. RSK2980]
gi|167549018|ref|ZP_02342777.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar
Saintpaul str. SARA29]
gi|167995207|ref|ZP_02576297.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar
4,[5],12:i:- str. CVM23701]
gi|168233258|ref|ZP_02658316.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar
Kentucky str. CDC 191]
gi|168235339|ref|ZP_02660397.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar
Schwarzengrund str. SL480]
gi|168241913|ref|ZP_02666845.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar
Heidelberg str. SL486]
gi|168260512|ref|ZP_02682485.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar Hadar
str. RI_05P066]
gi|168464958|ref|ZP_02698850.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar
Newport str. SL317]
gi|168818436|ref|ZP_02830436.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar
Weltevreden str. HI_N05-537]
gi|194442896|ref|YP_002042983.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar
Newport str. SL254]
gi|194448918|ref|YP_002047765.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar
Heidelberg str. SL476]
gi|194469845|ref|ZP_03075829.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar
Kentucky str. CVM29188]
gi|194735193|ref|YP_002116668.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar
Schwarzengrund str. CVM19633]
gi|197249680|ref|YP_002148665.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar Agona
str. SL483]
gi|197264642|ref|ZP_03164716.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar
Saintpaul str. SARA23]
gi|197364551|ref|YP_002144188.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar
Paratyphi A str. AKU_12601]
gi|198242269|ref|YP_002217694.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar Dublin
str. CT_02021853]
gi|200388670|ref|ZP_03215282.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar
Virchow str. SL491]
gi|204928479|ref|ZP_03219678.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar
Javiana str. GA_MM04042433]
gi|207858971|ref|YP_002245622.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar
Enteritidis str. P125109]
gi|213052654|ref|ZP_03345532.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar Typhi
str. E00-7866]
gi|213425224|ref|ZP_03357974.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar Typhi
str. E02-1180]
gi|213615659|ref|ZP_03371485.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar Typhi
str. E98-2068]
gi|213647931|ref|ZP_03377984.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar Typhi
str. J185]
gi|213852853|ref|ZP_03382385.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar Typhi
str. M223]
gi|238910231|ref|ZP_04654068.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar
Tennessee str. CDC07-0191]
gi|289809748|ref|ZP_06540377.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar Typhi
str. AG3]
gi|289824115|ref|ZP_06543712.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar Typhi
str. E98-3139]
gi|61234148|sp|P0A2C3|RNPH_SALTY RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|61234155|sp|P0A2C4|RNPH_SALTI RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|81599223|sp|Q5PC25|RNPH_SALPA RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|189043772|sp|A9MKN2|RNPH_SALAR RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|226736931|sp|B5EXE7|RNPH_SALA4 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|226736932|sp|B5FM66|RNPH_SALDC RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|226736933|sp|B5R5G7|RNPH_SALEP RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|226736935|sp|B4T9Y6|RNPH_SALHS RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|226736936|sp|B4SXE4|RNPH_SALNS RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|226736937|sp|B5BI17|RNPH_SALPK RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|226736938|sp|B4TZY4|RNPH_SALSV RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|25289292|pir||AG0970 RNase PH [imported] - Salmonella enterica subsp. enterica serovar
Typhi (strain CT18)
gi|16422302|gb|AAL22593.1| RNase PH [Salmonella enterica subsp. enterica serovar Typhimurium
str. LT2]
gi|16504880|emb|CAD03259.1| RNase PH [Salmonella enterica subsp. enterica serovar Typhi]
gi|29139700|gb|AAO71266.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar Typhi
str. Ty2]
gi|56129881|gb|AAV79387.1| RNase PH [Salmonella enterica subsp. enterica serovar Paratyphi A
str. ATCC 9150]
gi|160867078|gb|ABX23701.1| hypothetical protein SARI_03907 [Salmonella enterica subsp.
arizonae serovar 62:z4,z23:--]
gi|194401559|gb|ACF61781.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar
Newport str. SL254]
gi|194407222|gb|ACF67441.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar
Heidelberg str. SL476]
gi|194456209|gb|EDX45048.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar
Kentucky str. CVM29188]
gi|194710695|gb|ACF89916.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar
Schwarzengrund str. CVM19633]
gi|195632399|gb|EDX50883.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar
Newport str. SL317]
gi|197096028|emb|CAR61615.1| RNase PH [Salmonella enterica subsp. enterica serovar Paratyphi A
str. AKU_12601]
gi|197213383|gb|ACH50780.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar Agona
str. SL483]
gi|197242897|gb|EDY25517.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar
Saintpaul str. SARA23]
gi|197291458|gb|EDY30810.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar
Schwarzengrund str. SL480]
gi|197936785|gb|ACH74118.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar Dublin
str. CT_02021853]
gi|199605768|gb|EDZ04313.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar
Virchow str. SL491]
gi|204321912|gb|EDZ07110.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar
Javiana str. GA_MM04042433]
gi|205325541|gb|EDZ13380.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar
Saintpaul str. SARA29]
gi|205327076|gb|EDZ13840.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar
4,[5],12:i:- str. CVM23701]
gi|205332556|gb|EDZ19320.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar
Kentucky str. CDC 191]
gi|205338962|gb|EDZ25726.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar
Heidelberg str. SL486]
gi|205344359|gb|EDZ31123.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar
Weltevreden str. HI_N05-537]
gi|205350221|gb|EDZ36852.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar Hadar
str. RI_05P066]
gi|206710774|emb|CAR35135.1| RNase PH [Salmonella enterica subsp. enterica serovar Enteritidis
str. P125109]
gi|261248882|emb|CBG26736.1| RNase PH [Salmonella enterica subsp. enterica serovar Typhimurium
str. D23580]
gi|267995995|gb|ACY90880.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar
Typhimurium str. 14028S]
gi|301160271|emb|CBW19794.1| RNase PH [Salmonella enterica subsp. enterica serovar Typhimurium
str. SL1344]
gi|312914760|dbj|BAJ38734.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar
Typhimurium str. T000240]
gi|320088154|emb|CBY97916.1| RNase PH [Salmonella enterica subsp. enterica serovar Weltevreden
str. 2007-60-3289-1]
gi|321226787|gb|EFX51837.1| Ribonuclease PH [Salmonella enterica subsp. enterica serovar
Typhimurium str. TN061786]
gi|322612900|gb|EFY09852.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar
Montevideo str. 315996572]
gi|322618965|gb|EFY15852.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar
Montevideo str. 495297-1]
gi|322625258|gb|EFY22085.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar
Montevideo str. 495297-3]
gi|322630074|gb|EFY26847.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar
Montevideo str. 495297-4]
gi|322634266|gb|EFY31001.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar
Montevideo str. 515920-1]
gi|322635833|gb|EFY32542.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar
Montevideo str. 515920-2]
gi|322643029|gb|EFY39606.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar
Montevideo str. 531954]
gi|322645043|gb|EFY41574.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar
Montevideo str. NC_MB110209-0054]
gi|322649857|gb|EFY46280.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar
Montevideo str. OH_2009072675]
gi|322653064|gb|EFY49399.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar
Montevideo str. CASC_09SCPH15965]
gi|322661117|gb|EFY57345.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar
Montevideo str. 19N]
gi|322662394|gb|EFY58607.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar
Montevideo str. 81038-01]
gi|322667272|gb|EFY63438.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar
Montevideo str. MD_MDA09249507]
gi|322674351|gb|EFY70444.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar
Montevideo str. 414877]
gi|322678441|gb|EFY74502.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar
Montevideo str. 366867]
gi|322680947|gb|EFY76981.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar
Montevideo str. 413180]
gi|322687117|gb|EFY83090.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar
Montevideo str. 446600]
gi|323132094|gb|ADX19524.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar
Typhimurium str. 4/74]
gi|323195841|gb|EFZ81013.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar
Montevideo str. 609458-1]
gi|323198242|gb|EFZ83348.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar
Montevideo str. 556150-1]
gi|323200860|gb|EFZ85930.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar
Montevideo str. 609460]
gi|323206614|gb|EFZ91572.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar
Montevideo str. 507440-20]
gi|323210473|gb|EFZ95359.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar
Montevideo str. 556152]
gi|323216239|gb|EGA00967.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar
Montevideo str. MB101509-0077]
gi|323220461|gb|EGA04915.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar
Montevideo str. MB102109-0047]
gi|323225325|gb|EGA09559.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar
Montevideo str. MB110209-0055]
gi|323228439|gb|EGA12570.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar
Montevideo str. MB111609-0052]
gi|323234260|gb|EGA18348.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar
Montevideo str. 2009083312]
gi|323237245|gb|EGA21312.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar
Montevideo str. 2009085258]
gi|323244764|gb|EGA28768.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar
Montevideo str. 315731156]
gi|323245861|gb|EGA29851.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar
Montevideo str. IA_2009159199]
gi|323250956|gb|EGA34832.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar
Montevideo str. IA_2010008282]
gi|323257296|gb|EGA40995.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar
Montevideo str. IA_2010008283]
gi|323262220|gb|EGA45781.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar
Montevideo str. IA_2010008284]
gi|323264569|gb|EGA48073.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar
Montevideo str. IA_2010008285]
gi|323268858|gb|EGA52316.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar
Montevideo str. IA_2010008287]
gi|326625479|gb|EGE31824.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar Dublin
str. 3246]
gi|332990583|gb|AEF09566.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar
Typhimurium str. UK-1]
Length = 238
Score = 166 bits (421), Expect = 2e-39, Method: Composition-based stats.
Identities = 125/240 (52%), Positives = 162/240 (67%), Gaps = 2/240 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR +GR NQ+R ++LTR +K+AEGS LV+FGDT +L TA++EE VP +++ GWIT
Sbjct: 1 MRPAGRSANQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWIT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPR+T R REA G+QGGR+ EIQR+I RALR+ VDL LG I +DCDVIQ
Sbjct: 61 AEYGMLPRATHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKTLGEFTITLDCDVIQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+ITGA VAL D L + + +KG VAA+S G++ G I DL+Y
Sbjct: 121 ADGGTRTASITGACVALADALNKLVAN--GKLKTNPMKGMVAAVSVGIVNGEAICDLEYV 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
EDS + D N VMT+ G I+EVQG+AE FS + +L LA+ I ++ QK + N
Sbjct: 179 EDSAAETDMNVVMTEDGRIIEVQGTAEGEPFSHEELLTLLALARGGIESIVATQKAALEN 238
>gi|62182227|ref|YP_218644.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar
Choleraesuis str. SC-B67]
gi|75479865|sp|Q57I99|RNPH_SALCH RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|62129860|gb|AAX67563.1| RNase PH [Salmonella enterica subsp. enterica serovar Choleraesuis
str. SC-B67]
gi|322716715|gb|EFZ08286.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar
Choleraesuis str. A50]
Length = 238
Score = 166 bits (421), Expect = 2e-39, Method: Composition-based stats.
Identities = 124/240 (51%), Positives = 162/240 (67%), Gaps = 2/240 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR +GR NQ+R ++LTR +K+AEGS LV+FGDT +L TA++EE VP +++ GWIT
Sbjct: 1 MRPAGRSANQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWIT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPR+T R REA G+QGGR+ EIQR+I RALR+ VDL LG I +DCDV+Q
Sbjct: 61 AEYGMLPRATHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKTLGEFTITLDCDVVQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+ITGA VAL D L + + +KG VAA+S G++ G I DL+Y
Sbjct: 121 ADGGTRTASITGACVALADALNKLVAN--GKLKTNPMKGMVAAVSVGIVNGEAICDLEYV 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
EDS + D N VMT+ G I+EVQG+AE FS + +L LA+ I ++ QK + N
Sbjct: 179 EDSAAETDMNVVMTEDGRIIEVQGTAEGEPFSHEELLTLLALARGGIESIVATQKAALEN 238
>gi|86609199|ref|YP_477961.1| ribonuclease PH [Synechococcus sp. JA-2-3B'a(2-13)]
gi|123502063|sp|Q2JKT3|RNPH_SYNJB RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|86557741|gb|ABD02698.1| ribonuclease PH [Synechococcus sp. JA-2-3B'a(2-13)]
Length = 244
Score = 166 bits (421), Expect = 2e-39, Method: Composition-based stats.
Identities = 109/239 (45%), Positives = 152/239 (63%), Gaps = 3/239 (1%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R R Q+R +S R ++YA GS LVKFG TH+L TA++ E+VP +++NT GW+TA
Sbjct: 5 RPDNRTAAQLRPVSFERHFTRYAPGSVLVKFGHTHVLCTASVAEEVPPFLQNTGQGWLTA 64
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
EY MLP +T R R + GR+ EIQR+IGR+LR+ +D LGSR I +D DV+QA
Sbjct: 65 EYRMLPGATQQRQPR--EMLKLSGRTAEIQRLIGRSLRAALDFRKLGSRTITVDADVLQA 122
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLS-QVLKGHVAAISCGMLCGYPIVDLDYG 180
DGGTRTAAITG +VALHD + + L+ VAA+S G++ G +VDL Y
Sbjct: 123 DGGTRTAAITGGYVALHDAITWLYKQGALDPAQGSPLRQQVAALSVGIVQGEVLVDLCYE 182
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
EDS +VD N VM + G +E+QG+AE A FS+ ML +A+ I +L++ Q+ ++
Sbjct: 183 EDSQAEVDMNIVMNEQGSFIEIQGTAEAACFSRPQLLQMLEMAQAGIQELLQAQRQALN 241
>gi|114566005|ref|YP_753159.1| tRNA nucleotidyltransferase [Syntrophomonas wolfei subsp. wolfei
str. Goettingen]
gi|122318883|sp|Q0AZR6|RNPH_SYNWW RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|114336940|gb|ABI67788.1| RNAse PH [Syntrophomonas wolfei subsp. wolfei str. Goettingen]
Length = 239
Score = 166 bits (421), Expect = 2e-39, Method: Composition-based stats.
Identities = 113/238 (47%), Positives = 158/238 (66%), Gaps = 2/238 (0%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R R +QMR + + KY +GS L++ GDT ++ +A +EEKVP ++R GW+TA
Sbjct: 3 RPQNRGNDQMRTVRIIPGFQKYPDGSVLIEAGDTRVMCSAMMEEKVPPFLRGKGSGWVTA 62
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
EY +LP ST R +REA G+ GR+ EIQR+IGR+LR+VVD+ A+G R + IDCDV+QA
Sbjct: 63 EYSLLPSSTETRTQREASKGKISGRTSEIQRLIGRSLRAVVDMPAMGERTLWIDCDVLQA 122
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
DGGTRTAAITG++VAL+ + ++ + +K VAAIS G++ G PI+DL+Y E
Sbjct: 123 DGGTRTAAITGSFVALYLAFKKFKE--QGIIETIPVKDFVAAISVGIIDGTPILDLEYIE 180
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
DS DVD N VMT +G +E+QG+AE FS+ +L LA I +LI LQK ++
Sbjct: 181 DSQADVDMNVVMTGNGDFIEIQGTAEGTVFSRAELDQLLELAGKGIQELIALQKTILG 238
>gi|226326904|ref|ZP_03802422.1| hypothetical protein PROPEN_00764 [Proteus penneri ATCC 35198]
gi|225204741|gb|EEG87095.1| hypothetical protein PROPEN_00764 [Proteus penneri ATCC 35198]
Length = 251
Score = 166 bits (421), Expect = 2e-39, Method: Composition-based stats.
Identities = 122/240 (50%), Positives = 164/240 (68%), Gaps = 2/240 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR + RQ NQ+R I++TR +K+AEGS LV+FGDT +L AT+E+ VP +++ GW+T
Sbjct: 14 MRPADRQANQVRPITITRHYTKHAEGSVLVEFGDTKVLCNATVEDGVPRFLKGQGQGWVT 73
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPR+T +R REA G+Q GR+ EIQR+I R+LR+ VDL ALG I +DCDVIQ
Sbjct: 74 AEYGMLPRATNSRNAREAARGKQTGRTMEIQRLIARSLRAAVDLKALGEFTITVDCDVIQ 133
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+I+GA VAL D L M + + LK VAA+S G++ G P+ DL+Y
Sbjct: 134 ADGGTRTASISGACVALVDALNKMVEEGKLKKS--PLKSMVAAVSVGIVDGEPLCDLEYV 191
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
EDS + D N VM D G ++EVQG+AE A FS + A+L LAK + + + QK+ +
Sbjct: 192 EDSAAETDMNVVMIDDGRMIEVQGTAEGAPFSHEELLALLALAKGGLEKIFEAQKEALKQ 251
>gi|78044607|ref|YP_360578.1| polynucleotide phosphorylase/polyadenylase [Carboxydothermus
hydrogenoformans Z-2901]
gi|123575939|sp|Q3ABA6|PNP_CARHZ RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|77996722|gb|ABB15621.1| polyribonucleotide nucleotidyltransferase [Carboxydothermus
hydrogenoformans Z-2901]
Length = 731
Score = 166 bits (421), Expect = 2e-39, Method: Composition-based stats.
Identities = 49/244 (20%), Positives = 92/244 (37%), Gaps = 18/244 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56
+R+ GR+ +++R I + GS L G T +L+ T + ++ + +
Sbjct: 325 IRIDGRKTDEVRPIWCEVGLLPRTHGSGLFTRGQTQVLSIVTLGAVGDVQILDDLGIEES 384
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P S G R+ G RAL V+ + I I
Sbjct: 385 KRFMHHYNFPPYSVGEVRPMRGPGRREIGHGAL----AERALEPVIPPEEVFPYTIRIVS 440
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V++++G T ++ G+ +AL D ++ + + +G AI
Sbjct: 441 EVLESNGSTSMGSVCGSTLALMDAGVPIKAPVAGVAMGLIKEGDEVAILTD--------- 491
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED+ D+D T G I +Q + A ++D L A++ ++ +
Sbjct: 492 IQGIEDALGDMDFKVAGTKDG-ITALQMDIKIAGVTRDILTKALAQAREGRMHILGKMLE 550
Query: 237 VISN 240
VIS
Sbjct: 551 VISE 554
Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats.
Identities = 42/243 (17%), Positives = 81/243 (33%), Gaps = 33/243 (13%)
Query: 5 GRQENQ------MREISLTRR-VSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRN 53
GRQ + R + LT V+ A GS LV +GDT +L TAT E + +
Sbjct: 4 GRQILEKEIMIAGRPLKLTAGKVATQASGSVLVSYGDTVVLVTATGSKEPREGIDFFPLT 63
Query: 54 TKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQII 113
+ G +P R GR ++ R+I R +R + I+
Sbjct: 64 VDYEERFYAVGKIPGGFIKR------EGRPSEKAILSARLIDRPIRPLFPKGFKNDVHIV 117
Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP 173
+ D AA+ GA A G + A+ G++
Sbjct: 118 ATVLSVNQDNPPEIAAMNGASAA-------------LTLSHLPFLGPIGAVVVGLVEDEL 164
Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
+++ + + T ++ V+ A+ ++ + + + ++
Sbjct: 165 VINPTIEQAEKSRLHLVVAGTRD-AVMMVEAGAQEVP--EEIMIEAITRGHEEVKKIVAF 221
Query: 234 QKD 236
++
Sbjct: 222 IEE 224
>gi|293189253|ref|ZP_06607976.1| tRNA nucleotidyltransferase [Actinomyces odontolyticus F0309]
gi|292821716|gb|EFF80652.1| tRNA nucleotidyltransferase [Actinomyces odontolyticus F0309]
Length = 255
Score = 166 bits (420), Expect = 2e-39, Method: Composition-based stats.
Identities = 112/239 (46%), Positives = 158/239 (66%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+R GR +Q+R +S+TR S EGS L++FG+T +L A+ E VP W R++ GW+T
Sbjct: 6 LRADGRTPSQLRPVSITRGWSGTGEGSILIEFGNTRVLCVASFTEGVPRWKRDSGEGWVT 65
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
EY MLPR+T R RE+V G+ GGR+QEI R+IGR+LR +VD+SALG I++DCDV++
Sbjct: 66 GEYSMLPRATEQRSSRESVKGKVGGRTQEISRLIGRSLRGIVDVSALGENTIVLDCDVLR 125
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTAAITGA+VAL D + ++ ++VL ++AIS G++ G P++DL Y
Sbjct: 126 ADGGTRTAAITGAYVALADAVSWAKEQGILKPSAKVLTDSISAISVGVIDGTPMLDLPYV 185
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
ED + D N V T G +EVQG+AE A F++D +L+LA A L + QK +
Sbjct: 186 EDVRAETDMNVVQTGDGRFIEVQGTAEHAPFNRDELNELLDLATLGNARLAEAQKLALE 244
>gi|294101305|ref|YP_003553163.1| ribonuclease PH [Aminobacterium colombiense DSM 12261]
gi|293616285|gb|ADE56439.1| ribonuclease PH [Aminobacterium colombiense DSM 12261]
Length = 260
Score = 166 bits (420), Expect = 2e-39, Method: Composition-based stats.
Identities = 115/238 (48%), Positives = 159/238 (66%), Gaps = 2/238 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+R GR+ N++R IS R + YAEG+ L FGDT ++ TA++E++VP ++R + GWI+
Sbjct: 6 LRSDGRKFNEIRPISFQRHFTCYAEGAVLACFGDTKVICTASVEDRVPPFLRGSGQGWIS 65
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEY MLPR+T R R G GRS EIQR+IGR+LR+ DLS LG R I +DCDVIQ
Sbjct: 66 AEYAMLPRATAERTSRMTSKGAISGRSHEIQRLIGRSLRASADLSLLGERTIWLDCDVIQ 125
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTAAI+GA+VAL D ++ ++ +K VAA+S G + G ++DL Y
Sbjct: 126 ADGGTRTAAISGAFVALFDAMRCLKAQD--VIEKIPVKSFVAAVSVGKIEGSLLLDLCYE 183
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
EDS DVD N VM ++E+QG+ ER TF++D F AML+LA+D I ++ Q +V+
Sbjct: 184 EDSCADVDCNVVMNGDKQLIEIQGTGERGTFARDEFDAMLDLAEDGIQTIMFSQAEVL 241
>gi|259906754|ref|YP_002647110.1| ribonuclease PH [Erwinia pyrifoliae Ep1/96]
gi|224962376|emb|CAX53831.1| Ribonuclease PH (TRNA nucleotidyltransferase) [Erwinia pyrifoliae
Ep1/96]
gi|283476540|emb|CAY72368.1| ribonuclease PH [Erwinia pyrifoliae DSM 12163]
gi|310765964|gb|ADP10914.1| ribonuclease PH [Erwinia sp. Ejp617]
Length = 238
Score = 166 bits (420), Expect = 2e-39, Method: Composition-based stats.
Identities = 124/240 (51%), Positives = 165/240 (68%), Gaps = 2/240 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR SGR Q+R ++LTR +K+AEGS LV+FGDT +L TAT+EE VP +++ GW+T
Sbjct: 1 MRPSGRSAQQVRPVTLTRHYTKHAEGSVLVEFGDTKVLCTATIEEGVPRFLKGQGQGWVT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPR+T +R REA G+QGGR+ EIQR+I R+LR+ +DL ALG I +DCDV+Q
Sbjct: 61 AEYGMLPRATHSRNAREAAKGKQGGRTLEIQRLIARSLRAAIDLKALGEFTITLDCDVLQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+ITGA VAL D L H+ + +KG VAAIS G++ G + DL+Y
Sbjct: 121 ADGGTRTASITGACVALADALNHLVS--IGKLKANPMKGMVAAISVGIVNGEALCDLEYV 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
EDS + D N VMT+ G ++EVQG+AE FS + +L LA+ I L+ QK ++N
Sbjct: 179 EDSAAETDMNVVMTEDGRMIEVQGTAEGEPFSHEELLKLLELARGGIDTLVAAQKAALTN 238
>gi|299535538|ref|ZP_07048859.1| ribonuclease PH [Lysinibacillus fusiformis ZC1]
gi|298728738|gb|EFI69292.1| ribonuclease PH [Lysinibacillus fusiformis ZC1]
Length = 249
Score = 166 bits (420), Expect = 2e-39, Method: Composition-based stats.
Identities = 107/239 (44%), Positives = 147/239 (61%), Gaps = 1/239 (0%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R GR + +R + + + EGS L++ G+T ++ TAT+E+KVP ++R GWITA
Sbjct: 3 RFDGRNADGLRPVKIDSEYLLHPEGSVLIQVGNTKVICTATIEDKVPGFLRGQGKGWITA 62
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
EY MLPR+T R RE+ G+ GR+ EIQR+IGRALR+VVDL ALG R + IDCDVIQA
Sbjct: 63 EYSMLPRATAQRTPRESSRGKVNGRTMEIQRLIGRALRAVVDLEALGERTVWIDCDVIQA 122
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
DGGTRTA+ITGA+VA+ + + F+ V A + I+DL+Y E
Sbjct: 123 DGGTRTASITGAFVAMTQAIAKFAEEKP-FEKFPVTDFLAATSVGIVEEQGAILDLNYVE 181
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
D VD N VMT +G VE+QG+ E ATFS++ +L L + I L++LQK +
Sbjct: 182 DVAAAVDMNIVMTGAGRFVELQGTGEEATFSREELNELLALGEKGIQQLVELQKITLGE 240
>gi|152972490|ref|YP_001337636.1| ribonuclease PH [Klebsiella pneumoniae subsp. pneumoniae MGH 78578]
gi|206579777|ref|YP_002235994.1| ribonuclease PH [Klebsiella pneumoniae 342]
gi|238897086|ref|YP_002921832.1| ribonuclease PH [Klebsiella pneumoniae NTUH-K2044]
gi|290511794|ref|ZP_06551162.1| ribonuclease PH [Klebsiella sp. 1_1_55]
gi|166228287|sp|A6TFN5|RNPH_KLEP7 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|226736914|sp|B5XTF9|RNPH_KLEP3 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|150957339|gb|ABR79369.1| ribonuclease PH [Klebsiella pneumoniae subsp. pneumoniae MGH 78578]
gi|206568835|gb|ACI10611.1| ribonuclease PH [Klebsiella pneumoniae 342]
gi|238549414|dbj|BAH65765.1| ribonuclease PH [Klebsiella pneumoniae subsp. pneumoniae
NTUH-K2044]
gi|289775584|gb|EFD83584.1| ribonuclease PH [Klebsiella sp. 1_1_55]
Length = 238
Score = 166 bits (420), Expect = 2e-39, Method: Composition-based stats.
Identities = 125/240 (52%), Positives = 163/240 (67%), Gaps = 2/240 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR +GR NQ+R ++LTR +K+AEGS LV+FGDT +L TA+++E VP +++ GWIT
Sbjct: 1 MRPAGRSANQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIDEGVPRFLKGQGQGWIT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPRST R REA G+QGGR+ EIQR+I RALR+ VDL ALG I +DCDV+Q
Sbjct: 61 AEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+ITGA VAL D L + + +KG VAA+S G++ G I DL+Y
Sbjct: 121 ADGGTRTASITGACVALADALNKLVAA--GKLKTNPMKGMVAAVSVGIVNGEAICDLEYI 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
EDS + D N VMT+ G I+EVQG+AE F+ + +L LA+ I +I QK + N
Sbjct: 179 EDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLTLLALARGGIESIITTQKAALEN 238
>gi|323489951|ref|ZP_08095172.1| ribonuclease PH [Planococcus donghaensis MPA1U2]
gi|323396247|gb|EGA89072.1| ribonuclease PH [Planococcus donghaensis MPA1U2]
Length = 249
Score = 166 bits (420), Expect = 2e-39, Method: Composition-based stats.
Identities = 109/239 (45%), Positives = 154/239 (64%), Gaps = 5/239 (2%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R+ RQ N++R +++ + EGS L+ G T ++ TAT+E+KVP ++R GWITA
Sbjct: 3 RIDNRQTNELRPVTVDVEYLIHPEGSVLITVGQTKVICTATIEDKVPGFLRGQGKGWITA 62
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
EY MLPR+T +R +REA +G+ GGR+ EIQR+IGRALR+VVDL LG R + IDCDVIQA
Sbjct: 63 EYSMLPRATNSRNRREASAGKIGGRTMEIQRLIGRALRAVVDLEKLGERTLWIDCDVIQA 122
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
DGGTRTA+ITGA++A+ + +E V A PI+DL+Y E
Sbjct: 123 DGGTRTASITGAFIAMTMAIGKLE-----LPDFPVTDFLAATSVGVTAENGPILDLNYVE 177
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
DS+ +VD N VMT +GH VE+QG+ E +TF++ +L+L + I LI +Q+D +
Sbjct: 178 DSSAEVDMNLVMTGAGHFVELQGTGEESTFTRAQLNELLDLGEAGIRQLIAMQQDALGE 236
>gi|91774427|ref|YP_544183.1| polynucleotide phosphorylase/polyadenylase [Methylobacillus
flagellatus KT]
gi|123078691|sp|Q1GXD2|PNP_METFK RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|91708414|gb|ABE48342.1| 3' exoribonuclease [Methylobacillus flagellatus KT]
Length = 714
Score = 166 bits (420), Expect = 2e-39, Method: Composition-based stats.
Identities = 50/244 (20%), Positives = 97/244 (39%), Gaps = 18/244 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +R IS+ V GS L G+T L ATL +E++ ++
Sbjct: 315 RIDGRDTRTVRPISIRTGVLPRTHGSALFTRGETQALVVATLGTGRDEQIIDALQGEYAD 374
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y M P +TG + R+ G + RAL +V+ I + +
Sbjct: 375 RFMLHYNMPPYATGETGRVGTPKRREIGHGRL----AKRALLAVLPSQEEFGYTIRVVSE 430
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ G ++L D ++ + + +G+ A+ +
Sbjct: 431 ITESNGSSSMASVCGGCLSLLDAGVPLKAHVAGIAMGLIKEGNRVAVLTD---------I 481
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T+SG I +Q + + + L+ AK+ ++ L K+
Sbjct: 482 LGDEDHLGDMDFKVAGTESG-ITALQMDIKITGITAEIMRVALSQAKEGRLHILGLMKEA 540
Query: 238 ISNE 241
+ +
Sbjct: 541 VGEQ 544
Score = 104 bits (260), Expect = 8e-21, Method: Composition-based stats.
Identities = 40/235 (17%), Positives = 83/235 (35%), Gaps = 28/235 (11%)
Query: 13 EISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT----KHGWITAEYGMLP 67
E++L +++ A+G+ +V +GDT +L + + +V + T G +P
Sbjct: 14 ELTLETGEIARQADGAVMVSYGDTVVLVSVVGKREVKEGQDFFPLTVDYQEKTYAAGKIP 73
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R GR + R+I R LR + + Q++ +
Sbjct: 74 GGFFKR------EGRPSEKETLTSRLIDRPLRPLFPEAFYNEVQVVATVMSSDPEIDADI 127
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
AI GA A G + A G + G +++ + +
Sbjct: 128 PAIIGASAA-------------LAISGIPFYGPIGAARVGYINGEYVLNPTASQLKETAL 174
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNEV 242
D T+S ++ V+ A+ +D + +++ +I + ++ EV
Sbjct: 175 DLVVAATES-AVLMVESEAKE--LPEDVMLGSVVYGHEQMQIVISAINE-LAAEV 225
>gi|319789227|ref|YP_004150860.1| polyribonucleotide nucleotidyltransferase [Thermovibrio
ammonificans HB-1]
gi|317113729|gb|ADU96219.1| polyribonucleotide nucleotidyltransferase [Thermovibrio
ammonificans HB-1]
Length = 714
Score = 166 bits (420), Expect = 2e-39, Method: Composition-based stats.
Identities = 47/244 (19%), Positives = 88/244 (36%), Gaps = 18/244 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
+R+ GR+ +++R IS+ + A GS L G T L T TL E ++ + +
Sbjct: 311 VRIDGRKPDEIRPISIEVGLLPRAHGSALFTRGQTQALVTTTLGTPEEYQLVEGLMPEEQ 370
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P G R+ G RAL V+ I +
Sbjct: 371 KRFMLHYNFPPFCVGEISPMRGPGRREIGHGAL----AERALAPVIPPEEEFPYVIRVVS 426
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
D+++++G + A + G ++L D ++ + +++G +
Sbjct: 427 DILESNGSSSMATVCGGSLSLMDAGVPIKAQVAGIAMGLIMEGDKFVVLSD--------- 477
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T G + +Q + S++ L A+ ++
Sbjct: 478 ILGDEDHLGDMDFKVAGTRKG-VTAIQMDLKVKGISREVLSKALEQARRGRMFILDKMDA 536
Query: 237 VISN 240
VIS
Sbjct: 537 VISE 540
Score = 121 bits (303), Expect = 9e-26, Method: Composition-based stats.
Identities = 48/230 (20%), Positives = 84/230 (36%), Gaps = 27/230 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEK----VPMWIRNTKHGWITAEYGML 66
R + V+K A+GS LV GDT +L TA + ++ V + ++ G +
Sbjct: 13 RPMRFQTGKVAKQADGSVLVSQGDTIVLVTAVMSDEPREDVDFFPLLVEYRERAYAAGKI 72
Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
P R G+ R+ R++R + Q+I +
Sbjct: 73 PGGFIKR------EGKPTDEEILKARVTDRSIRPIFPKGFRNDVQVIAFVISADQENDPA 126
Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
AI GA ALH + V A+ + G +++ Y E D
Sbjct: 127 VLAINGASAALH-------------ISRIPFEKPVGAVRVARVDGKLVINPSYEERQRAD 173
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+D T+ +V V+G A+ ++ + LA + I ++K Q +
Sbjct: 174 IDLIVSGTED-AVVMVEGGAKEVP--EEEVLDAILLAHEEIKKIVKAQDE 220
>gi|253995588|ref|YP_003047652.1| polynucleotide phosphorylase/polyadenylase [Methylotenera mobilis
JLW8]
gi|253982267|gb|ACT47125.1| 3' exoribonuclease [Methylotenera mobilis JLW8]
Length = 709
Score = 166 bits (420), Expect = 2e-39, Method: Composition-based stats.
Identities = 50/242 (20%), Positives = 94/242 (38%), Gaps = 18/242 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +R IS+ V GS L G+T L ATL +E++ ++
Sbjct: 316 RIDGRDTRTVRPISIRTGVLPRTHGSALFTRGETQALVVATLGTGRDEQIIDALQGEYAD 375
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y M P +TG + R+ G + RAL + + + + +
Sbjct: 376 RFMLHYNMPPYATGETGRVGTPKRREIGHGRL----AKRALVAALPAKEDFDYTMRVVSE 431
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ G +AL D M++ + + +G+ A+ +
Sbjct: 432 ITESNGSSSMASVCGGCLALMDAGVPMKNHVAGIAMGLIKEGNRVAVLTD---------I 482
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T+ G I +Q + + L AK+ A ++ + K
Sbjct: 483 LGDEDHLGDMDFKVAGTEDG-ITALQMDIKITGITAQIMQVALAQAKEGRAHILGIMKQA 541
Query: 238 IS 239
+S
Sbjct: 542 VS 543
Score = 100 bits (248), Expect = 2e-19, Method: Composition-based stats.
Identities = 37/232 (15%), Positives = 82/232 (35%), Gaps = 27/232 (11%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT----KHGWITAEYGMLPR 68
++L +S+ A+ + +V +GDT +L T + +V + T G +P
Sbjct: 16 LTLETGEISRQADAAVMVSYGDTVVLVAVTSKREVKAGQDFFPLTVDYMEKTYAAGKIPG 75
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
R GR + R+I R LR + + Q++ +
Sbjct: 76 GFFKR------EGRPSEKETLTSRLIDRPLRPLFPEAFYNEVQVVATVLSSDPEIDADIP 129
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
AI GA A+ + A G + +++ + ++D
Sbjct: 130 AIIGASAAMSLSGIPYYG-------------PLGAARVGYINDEYVLNPTKAQLEETELD 176
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
T+S ++ V+ A+ S++ + +++ +IK+ ++ +
Sbjct: 177 LVVAATES-AVMMVESEAKE--LSEEVMLGAVVYGHEQMQAVIKMISELAAE 225
>gi|254819170|ref|ZP_05224171.1| ribonuclease PH [Mycobacterium intracellulare ATCC 13950]
Length = 259
Score = 166 bits (420), Expect = 2e-39, Method: Composition-based stats.
Identities = 106/239 (44%), Positives = 153/239 (64%), Gaps = 1/239 (0%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R GR ++++R + +TR + + GS L++FG T ++ TA++ E VP W + + GW+TA
Sbjct: 4 REDGRLDDELRPVVITRGFTDHPAGSVLIEFGHTKVMCTASVTEGVPRWRKGSGLGWLTA 63
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
EY MLP +T R RE+V GR GR+QEI R+IGR+LR+ +DL+ALG I +DCDV+QA
Sbjct: 64 EYAMLPSATHTRSDRESVKGRLSGRTQEISRLIGRSLRACIDLAALGENTIAVDCDVLQA 123
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
DGGTRTAAITGA+VAL D + K + L +AA+S G++ G VDL Y E
Sbjct: 124 DGGTRTAAITGAFVALADA-VTYLGAAGKLSDPRPLSCAIAAVSVGVVDGRVRVDLPYEE 182
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
D+ +VD N V TD+G +VEVQG+ E ATF + +L++A L Q++ ++
Sbjct: 183 DARAEVDMNVVATDTGTLVEVQGTGEGATFPRSTLDKLLDVALAACDKLFAAQREALAQ 241
>gi|120405241|ref|YP_955070.1| ribonuclease PH [Mycobacterium vanbaalenii PYR-1]
gi|166228297|sp|A1TD14|RNPH_MYCVP RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|119958059|gb|ABM15064.1| RNAse PH [Mycobacterium vanbaalenii PYR-1]
Length = 260
Score = 166 bits (420), Expect = 2e-39, Method: Composition-based stats.
Identities = 109/238 (45%), Positives = 154/238 (64%), Gaps = 1/238 (0%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R GR ++++R +++TR + + GS LV+FG T ++ TA++ E VP W + + GW+TA
Sbjct: 4 REDGRLDDELRPVTITRGFTTHPAGSVLVEFGQTRVMCTASVTEGVPRWRKGSGQGWLTA 63
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
EY MLP +T R RE+V GR GGR+QEI R++GR+LR+ +DL+ALG I IDCDV+QA
Sbjct: 64 EYAMLPAATHERSGRESVKGRVGGRTQEISRLVGRSLRACIDLAALGENTIAIDCDVLQA 123
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
DGGTRTAAITGA+VAL D + K + L +AA+S G++ G VDL Y E
Sbjct: 124 DGGTRTAAITGAYVALADA-VTYLAAAGKLSDPRPLSCAIAAVSVGVVDGRIRVDLPYTE 182
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
DS +VD N V TD+G +VE+QG+ E ATF + ML+ A L ++Q+ +
Sbjct: 183 DSRAEVDMNVVATDTGTLVEIQGTGEGATFPRSTLDKMLDAAMAACDQLFEIQRAALE 240
>gi|332655285|ref|ZP_08421025.1| tRNA nucleotidyltransferase [Ruminococcaceae bacterium D16]
gi|332515790|gb|EGJ45400.1| tRNA nucleotidyltransferase [Ruminococcaceae bacterium D16]
Length = 237
Score = 166 bits (420), Expect = 2e-39, Method: Composition-based stats.
Identities = 102/238 (42%), Positives = 149/238 (62%), Gaps = 3/238 (1%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R+ GR+ +++R I + ++K+AEGSCL++ G+TH+L TA++E+K P + GW+TA
Sbjct: 3 RIDGRKNDELRPIEIIPNINKFAEGSCLIRCGNTHVLCTASVEDKPPRHV-PEGEGWVTA 61
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
EY MLPR+ R +R+ + GRS EIQR+IGR+LRSVVD LG I IDCDV+Q
Sbjct: 62 EYSMLPRANRERSRRDISKLKLNGRSAEIQRLIGRSLRSVVDRKKLGPWNITIDCDVLQG 121
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
DGGTRTA+ITG +VA+ Q M + + G+VAA+S G++ P++DL Y E
Sbjct: 122 DGGTRTASITGGFVAMMLAFQKMMEK--GQLSEYPISGYVAAVSAGVVNDVPMLDLCYEE 179
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
DS+ VD N VM D G ++E+QG+ E F+ + ++ L I +L QK +
Sbjct: 180 DSSAMVDLNCVMDDQGRLIEIQGTGEGRPFTLEEQQKLVELCAKGIQELQAAQKKALG 237
>gi|313673255|ref|YP_004051366.1| polyribonucleotide nucleotidyltransferase [Calditerrivibrio
nitroreducens DSM 19672]
gi|312940011|gb|ADR19203.1| polyribonucleotide nucleotidyltransferase [Calditerrivibrio
nitroreducens DSM 19672]
Length = 706
Score = 166 bits (420), Expect = 3e-39, Method: Composition-based stats.
Identities = 46/240 (19%), Positives = 94/240 (39%), Gaps = 10/240 (4%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+R+ GR+ +++R I + + A GS L G+T L + TL K+ + + G +
Sbjct: 320 IRVDGRRYDEIRPIDIEVGLLPRAHGSALFTRGETQALVSTTLGTKMDSQLVDDIEGNSS 379
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
+ + V G G R + RAL V+ + I + ++++
Sbjct: 380 KRFMLHYNFPPFSVGEVGRMGAPGRREVGHGALAERALSFVIPDESDFPYTIRVVSEILE 439
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
++G + A + G ++L D ++D + + + AI ++
Sbjct: 440 SNGSSSMATVCGGCLSLMDAGVPVKDMVAGIAMGLIYEKGRYAILSDIM---------GI 490
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
ED D+D T G I +Q + S D L A+ ++ ++V+++
Sbjct: 491 EDHLGDMDFKVAGTKDG-ITALQMDIKIEGLSMDLVREALAAARVGRLHILSKMQEVLAS 549
Score = 112 bits (280), Expect = 4e-23, Method: Composition-based stats.
Identities = 49/247 (19%), Positives = 81/247 (32%), Gaps = 34/247 (13%)
Query: 7 QENQMR------EISLTRRV-SKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK---- 55
+ ++R I L +K GS K G+T +L TA + +KVP I
Sbjct: 6 KSYEIRLGSNAEPIILETGWKAKQTNGSIWAKHGETVVLVTAVMSKKVPEDIDFFPLTVN 65
Query: 56 HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115
+ G +P R + + I R+I R LR + QI+
Sbjct: 66 YIEKFYSVGKIPGGFLKR------ESKPSDKETLIARLIDRPLRPIFPDGFRNEVQIVAT 119
Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIV 175
+I A AL G V A+ G L G I+
Sbjct: 120 VVSSDQKNSPDVLSINAASAALM-------------ISDIPFNGPVGAVRVGKLNGEYII 166
Query: 176 DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
+ D + ++ T+ IV V+ + S++ I ++I +QK
Sbjct: 167 NPDAELFDQLVMNIVLAGTED-AIVMVEAGLKN--VSEEEVVEAFEKGHQAIREIIAVQK 223
Query: 236 DVISNEV 242
+ E+
Sbjct: 224 K-MREEL 229
>gi|291086420|ref|ZP_06355763.2| tRNA nucleotidyltransferase [Citrobacter youngae ATCC 29220]
gi|291068205|gb|EFE06314.1| tRNA nucleotidyltransferase [Citrobacter youngae ATCC 29220]
Length = 273
Score = 166 bits (420), Expect = 3e-39, Method: Composition-based stats.
Identities = 123/240 (51%), Positives = 162/240 (67%), Gaps = 2/240 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR +GR NQ+R ++LTR +K+AEGS LV+FGDT +L TA+++E VP +++ GWIT
Sbjct: 36 MRPAGRSANQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIDEGVPRFLKGQGQGWIT 95
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPR+T R REA G+QGGR+ EIQR+I RALR+ VDL LG I +DCDVIQ
Sbjct: 96 AEYGMLPRATHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKTLGEFTITLDCDVIQ 155
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+ITGA VAL D L + + +KG VAA+S G++ G + DL+Y
Sbjct: 156 ADGGTRTASITGACVALADALNKLVAS--GKLKTNPMKGMVAAVSVGIVNGEALCDLEYV 213
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
EDS + D N VMT+ G I+EVQG+AE FS + +L LA+ I ++ QK + N
Sbjct: 214 EDSAAETDMNVVMTEDGRIIEVQGTAEGEPFSHEELLTLLALARGGIESIVATQKAALEN 273
>gi|237728940|ref|ZP_04559421.1| ribonuclease PH [Citrobacter sp. 30_2]
gi|283787723|ref|YP_003367588.1| ribonuclease PH [Citrobacter rodentium ICC168]
gi|226909562|gb|EEH95480.1| ribonuclease PH [Citrobacter sp. 30_2]
gi|282951177|emb|CBG90870.1| ribonuclease PH [Citrobacter rodentium ICC168]
Length = 238
Score = 166 bits (420), Expect = 3e-39, Method: Composition-based stats.
Identities = 123/240 (51%), Positives = 162/240 (67%), Gaps = 2/240 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR +GR NQ+R ++LTR +K+AEGS LV+FGDT +L TA+++E VP +++ GWIT
Sbjct: 1 MRPAGRSANQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIDEGVPRFLKGQGQGWIT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPR+T R REA G+QGGR+ EIQR+I RALR+ VDL LG I +DCDVIQ
Sbjct: 61 AEYGMLPRATHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKTLGEFTITLDCDVIQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+ITGA VAL D L + + +KG VAA+S G++ G + DL+Y
Sbjct: 121 ADGGTRTASITGACVALADALNKLVAS--GKLKTNPMKGMVAAVSVGIVNGEALCDLEYV 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
EDS + D N VMT+ G I+EVQG+AE FS + +L LA+ I ++ QK + N
Sbjct: 179 EDSAAETDMNVVMTEDGRIIEVQGTAEGEPFSHEELLTLLALARGGIESIVATQKAALEN 238
>gi|86159780|ref|YP_466565.1| ribonuclease PH [Anaeromyxobacter dehalogenans 2CP-C]
gi|123496476|sp|Q2IEX1|RNPH_ANADE RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|85776291|gb|ABC83128.1| RNAse PH [Anaeromyxobacter dehalogenans 2CP-C]
Length = 239
Score = 166 bits (420), Expect = 3e-39, Method: Composition-based stats.
Identities = 125/239 (52%), Positives = 166/239 (69%), Gaps = 2/239 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR +GR +R I L RVSK+AEGSCLV+FGDTH+L TA+++EKVP + T GW+T
Sbjct: 1 MRKNGRGPLDLRPILLEPRVSKHAEGSCLVRFGDTHVLCTASVDEKVPPHVYGTGAGWVT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPRST R++REA G+Q GR+ EIQR++GRALR+ VDL A+G R + +DCDVIQ
Sbjct: 61 AEYGMLPRSTHERMQREAARGKQTGRTLEIQRLVGRALRAAVDLRAIGPRTVTLDCDVIQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTAAITGA+VAL ++ ++ K +K VAA+S G++ G +DLDY
Sbjct: 121 ADGGTRTAAITGAYVALVQAVRSIQKR--KQLAHDPVKRSVAAVSVGIVAGEVHLDLDYD 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
EDST +VD N V T G +VEVQG+AE F++ ML+ A ++ L +LQ+ +
Sbjct: 179 EDSTAEVDMNVVATGEGALVEVQGTAEGKPFARAELDRMLDAALAGLSRLKELQEAALR 237
>gi|255263447|ref|ZP_05342789.1| ribonuclease PH [Thalassiobium sp. R2A62]
gi|255105782|gb|EET48456.1| ribonuclease PH [Thalassiobium sp. R2A62]
Length = 235
Score = 166 bits (419), Expect = 3e-39, Method: Composition-based stats.
Identities = 126/237 (53%), Positives = 168/237 (70%), Gaps = 4/237 (1%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR SGR ++MR I++ V+K+AEGSCL++ GDTH+L AT+E++VP ++RN+ GW+T
Sbjct: 1 MRPSGRSIDEMRAITIETDVTKHAEGSCLIQCGDTHVLCAATVEDRVPPFMRNSGLGWVT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPR+T R++R Q GR+QEIQR+IGR+LR+ VD ALG RQI +DCDVIQ
Sbjct: 61 AEYGMLPRATNTRMRR-EAKNGQSGRTQEIQRLIGRSLRAGVDRVALGERQITVDCDVIQ 119
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTR A+ITG WVAL + + +S L+ VAAISCG+ G ++DLDY
Sbjct: 120 ADGGTRCASITGGWVALKLAVNKLIKA--GDIISDPLETPVAAISCGIYAGQAVLDLDYP 177
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
EDS VD NFVMT S ++EVQ SAE ATFS+D +++LA+ +A+L +LQ D
Sbjct: 178 EDSEAGVDGNFVMTGS-QMIEVQMSAEGATFSRDQMNELVDLAEKGVAELSRLQIDA 233
>gi|288933001|ref|YP_003437060.1| ribonuclease PH [Klebsiella variicola At-22]
gi|288887730|gb|ADC56048.1| ribonuclease PH [Klebsiella variicola At-22]
Length = 238
Score = 166 bits (419), Expect = 3e-39, Method: Composition-based stats.
Identities = 125/240 (52%), Positives = 163/240 (67%), Gaps = 2/240 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR +GR NQ+R ++LTR +K+AEGS LV+FGDT +L TA+++E VP +++ GWIT
Sbjct: 1 MRPAGRSANQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIDEGVPRFLKGQGQGWIT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPRST R REA G+QGGR+ EIQR+I RALR+ VDL ALG I +DCDV+Q
Sbjct: 61 AEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+ITGA VAL D L + + +KG VAA+S G++ G I DL+Y
Sbjct: 121 ADGGTRTASITGACVALADALNKLAAA--GKLKTNPMKGMVAAVSVGIVNGEAICDLEYI 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
EDS + D N VMT+ G I+EVQG+AE F+ + +L LA+ I +I QK + N
Sbjct: 179 EDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLTLLALARGGIESIITTQKAALEN 238
>gi|237806963|ref|YP_002891403.1| ribonuclease PH [Tolumonas auensis DSM 9187]
gi|259494130|sp|C4L818|RNPH_TOLAT RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|237499224|gb|ACQ91817.1| ribonuclease PH [Tolumonas auensis DSM 9187]
Length = 237
Score = 166 bits (419), Expect = 3e-39, Method: Composition-based stats.
Identities = 118/224 (52%), Positives = 156/224 (69%), Gaps = 2/224 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR SGR Q+R I++TR+ + +AEGS LV+FG T +L TAT+ E VP +++ GW+T
Sbjct: 1 MRPSGRTPEQLRPITITRQYTCHAEGSVLVEFGRTKVLCTATVTEGVPRFLKGKGQGWVT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPRST +R+ REA SG+QGGR+ EIQR+I R+LR+ VDL+ LG I +DCDV+Q
Sbjct: 61 AEYGMLPRSTHSRMHREAASGKQGGRTLEIQRLIARSLRAAVDLTKLGENTITVDCDVLQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+ITGA VAL D L M + L VAA+S G+ G P+ DLDY
Sbjct: 121 ADGGTRTASITGACVALADALNWMLAK--GSLKTNPLNFMVAAVSVGIYEGAPVCDLDYD 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAK 224
EDS+ + D N VMT++G ++E+QG+AE FSQ+ +L L K
Sbjct: 179 EDSSAETDMNLVMTETGKMIEIQGTAEGEPFSQEELMQLLELGK 222
>gi|167562173|ref|ZP_02355089.1| polynucleotide phosphorylase/polyadenylase [Burkholderia
oklahomensis EO147]
gi|167569418|ref|ZP_02362292.1| polynucleotide phosphorylase/polyadenylase [Burkholderia
oklahomensis C6786]
Length = 714
Score = 166 bits (419), Expect = 3e-39, Method: Composition-based stats.
Identities = 46/242 (19%), Positives = 92/242 (38%), Gaps = 18/242 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHG 57
R+ GR +R I + V GS L G+T L AT +E++ +
Sbjct: 322 RIDGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQALVVATLGTKGDEQIIDALEGEYRE 381
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y M P +TG + + R+ G + RAL + + + I + +
Sbjct: 382 RFMLHYNMPPFATGETGRVGSPKRREIGHGRL----AKRALVACLPSADEFGYSIRVVSE 437
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ G +AL D M+ + +L+G+ A+ +
Sbjct: 438 ITESNGSSSMASVCGGCLALMDAGVPMKAHVAGIAMGLILEGNKFAVLTD---------I 488
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T G + +Q + +++ L AK+ ++ +
Sbjct: 489 LGDEDHLGDMDFKVAGTADG-VTALQMDIKIQGITKEIMQVALAQAKEGRMHILGKMTEA 547
Query: 238 IS 239
++
Sbjct: 548 VA 549
Score = 98.8 bits (244), Expect = 6e-19, Method: Composition-based stats.
Identities = 35/233 (15%), Positives = 72/233 (30%), Gaps = 27/233 (11%)
Query: 13 EISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT----KHGWITAEYGMLP 67
++ L +++ A G+ LV DT +L T + + T G +P
Sbjct: 17 KVRLETGEIARQASGAVLVDIEDTVVLATVVGAKSAKPGQDFFPLTVDYIEKTYSAGKIP 76
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R GR R+I R LR + Q++I + +
Sbjct: 77 GGFFRR------EGRPSEHETLTSRLIDRPLRPLFPEGFYNEVQVVIHVLSVNPEVPADI 130
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
A+ GA A G V A + +++ + +
Sbjct: 131 PALIGASAA-------------LAVSGLPFNGPVGAARVAYVNNEYVLNPTREQIKASRL 177
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
D T+ ++ V+ A++ +D + +++ I +++
Sbjct: 178 DLVVAGTER-AVLMVESEAQQ--LPEDVMLGAVVFGHEQMQTAIDAIHELVRE 227
>gi|56964417|ref|YP_176148.1| ribonuclease PH [Bacillus clausii KSM-K16]
gi|61215808|sp|Q5WEM3|RNPH_BACSK RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|56910660|dbj|BAD65187.1| ribonuclease PH [Bacillus clausii KSM-K16]
Length = 250
Score = 166 bits (419), Expect = 3e-39, Method: Composition-based stats.
Identities = 114/241 (47%), Positives = 155/241 (64%), Gaps = 3/241 (1%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR GR++NQ+RE+ + +K+AEGS L+ GDT ++ TA++E +VP ++R GW+
Sbjct: 1 MRQDGRKQNQLREVEIIPHFTKHAEGSVLISVGDTKVICTASIENRVPPFLRGQNKGWLA 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEY MLPR+TG R REA G+ GR+ EIQR+IGRALR+VVDL LG + I IDCDVIQ
Sbjct: 61 AEYSMLPRATGQRTIREAAKGKLSGRTMEIQRLIGRALRAVVDLEKLGEKTIWIDCDVIQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGM-LCGYPIVDLDY 179
ADGGTRTA+ITGA+VAL + + + K + + +AAIS G+ + DL Y
Sbjct: 121 ADGGTRTASITGAYVALVLAV--QKAFAEKTISAWPITDFLAAISVGILPEEGAVCDLCY 178
Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
EDS VD N V T SG VEVQGS E A +++ +L+LA + I LI +Q+ +
Sbjct: 179 SEDSQAKVDMNIVQTGSGDFVEVQGSGEEAVYTRSELNELLDLAAEGIDQLIHIQRPFLG 238
Query: 240 N 240
Sbjct: 239 E 239
>gi|323705986|ref|ZP_08117556.1| ribonuclease PH [Thermoanaerobacterium xylanolyticum LX-11]
gi|323534600|gb|EGB24381.1| ribonuclease PH [Thermoanaerobacterium xylanolyticum LX-11]
Length = 259
Score = 166 bits (419), Expect = 3e-39, Method: Composition-based stats.
Identities = 112/239 (46%), Positives = 164/239 (68%), Gaps = 2/239 (0%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R+ GR +R I +TR ++YAEGS L++ G+T ++ TA++E+KVP + + T GWIT+
Sbjct: 3 RVDGRDSRSLRPIKITRNFNRYAEGSVLIEVGNTKVICTASIEDKVPPFQKGTGKGWITS 62
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
EY M+PR+T R +RE+ G+Q GR+ EIQR+IGRALR+VVDL ALG + I IDCDVIQA
Sbjct: 63 EYSMIPRATETRTQRESTKGKQSGRTMEIQRLIGRALRAVVDLDALGEKTIWIDCDVIQA 122
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
DGGTRTA+ITG++VAL D + +++ +K VAA+S G++ ++DL Y E
Sbjct: 123 DGGTRTASITGSFVALVDAMNKLKEK--GAISKLPIKSFVAAVSVGIVGNEKLLDLCYLE 180
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
DS VD N VMTD G +E+QG+ E FS+ F +L LA++ + +I++QK+ + +
Sbjct: 181 DSNAHVDMNIVMTDKGEFIEIQGTGEGGPFSKSDFSELLELAEEGLNKIIQVQKESLGD 239
>gi|110643884|ref|YP_671614.1| ribonuclease PH [Escherichia coli 536]
gi|191170501|ref|ZP_03032054.1| ribonuclease PH [Escherichia coli F11]
gi|300983477|ref|ZP_07176624.1| ribonuclease PH [Escherichia coli MS 200-1]
gi|306816009|ref|ZP_07450147.1| ribonuclease PH [Escherichia coli NC101]
gi|123048705|sp|Q0TBG6|RNPH_ECOL5 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|110345476|gb|ABG71713.1| ribonuclease PH [Escherichia coli 536]
gi|190909309|gb|EDV68895.1| ribonuclease PH [Escherichia coli F11]
gi|300306941|gb|EFJ61461.1| ribonuclease PH [Escherichia coli MS 200-1]
gi|305850405|gb|EFM50862.1| ribonuclease PH [Escherichia coli NC101]
gi|324012723|gb|EGB81942.1| ribonuclease PH [Escherichia coli MS 60-1]
Length = 238
Score = 166 bits (419), Expect = 3e-39, Method: Composition-based stats.
Identities = 125/240 (52%), Positives = 166/240 (69%), Gaps = 2/240 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR +GR NQ+R ++LTR +K+AEGS LV+FGDT +L TA++EE VP +++ GWIT
Sbjct: 1 MRPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWIT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPRST R REA G+QGGR+ EIQR+I RALR+ VDL ALG I +DCDV+Q
Sbjct: 61 AEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+ITGA VAL D LQ + + + +KG VAA+S G++ G + DL+Y
Sbjct: 121 ADGGTRTASITGACVALADALQKLVEN--GKLKTNPMKGMVAAVSVGIVNGEAVCDLEYV 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
EDS + D N VMT+ G I+EVQG+AE F+ + +L LA+ I ++ QK ++N
Sbjct: 179 EDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLTLLALARGGIESIVVTQKAALAN 238
>gi|260654137|ref|ZP_05859627.1| tRNA nucleotidyltransferase [Jonquetella anthropi E3_33 E1]
gi|260631122|gb|EEX49316.1| tRNA nucleotidyltransferase [Jonquetella anthropi E3_33 E1]
Length = 250
Score = 166 bits (419), Expect = 3e-39, Method: Composition-based stats.
Identities = 107/239 (44%), Positives = 160/239 (66%), Gaps = 2/239 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+R +GR +R+ISLT V+++AEGSCLV++G+T +L TA+++ KVP ++R + GW+T
Sbjct: 6 LRNNGRGACDLRKISLTLDVNRWAEGSCLVEWGETKVLCTASVDNKVPPFLRGSGQGWVT 65
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEY MLPR+T +R RE+V GRQ GRS EI R+IGR+LR+ VDL+ LG + +DCDV+Q
Sbjct: 66 AEYAMLPRATSSRTVRESVKGRQSGRSMEISRLIGRSLRASVDLAQLGELTVTLDCDVLQ 125
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+ITGA++AL ++ + + VAA+S G + G + DLDY
Sbjct: 126 ADGGTRTASITGAFLALAGAVRSLIAGGRIAAS--PFRMPVAAVSIGKVDGQILTDLDYS 183
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
EDS +VD N V +G +E+QG+ E TFS+ +L+ ++ +A + +LQ+ +
Sbjct: 184 EDSRAEVDFNVVGNGNGVFIELQGTGEGGTFSRSELNELLDCGENALAQITELQRKTMG 242
>gi|295095228|emb|CBK84318.1| ribonuclease PH [Enterobacter cloacae subsp. cloacae NCTC 9394]
Length = 238
Score = 166 bits (419), Expect = 3e-39, Method: Composition-based stats.
Identities = 123/240 (51%), Positives = 162/240 (67%), Gaps = 2/240 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR +GR NQ+R ++LTR +K+AEGS LV+FGDT +L TA++EE VP +++ GWIT
Sbjct: 1 MRPAGRSANQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWIT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPR+T R REA G+QGGR+ EIQR+I RALR+ VDL LG I +DCDVIQ
Sbjct: 61 AEYGMLPRATHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKTLGEFTITLDCDVIQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+ITGA VAL D L + + +KG VAA+S G++ G + DL+Y
Sbjct: 121 ADGGTRTASITGACVALADALNKLVAA--GKLKTNPMKGMVAAVSVGIVNGEALCDLEYV 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
EDS + D N VMT+ G I+EVQG+AE F+ + +L LA+ I ++ QK + N
Sbjct: 179 EDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLTLLALARGGIESIVATQKAALEN 238
>gi|268593302|ref|ZP_06127523.1| tRNA nucleotidyltransferase [Providencia rettgeri DSM 1131]
gi|291310999|gb|EFE51452.1| tRNA nucleotidyltransferase [Providencia rettgeri DSM 1131]
Length = 237
Score = 166 bits (419), Expect = 3e-39, Method: Composition-based stats.
Identities = 118/239 (49%), Positives = 162/239 (67%), Gaps = 2/239 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR + RQ +QMR I++TR +K+AEGS L++FGDT +L AT+EE VP +++ GW+T
Sbjct: 1 MRPADRQADQMRPITITRNYTKHAEGSVLIEFGDTKVLCNATVEEGVPRFLKGQGQGWVT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPR+T +R +REA G+Q GR+ EIQR+I R+LR+ VDL LG I +DCDVIQ
Sbjct: 61 AEYGMLPRATNSRNQREAARGKQTGRTMEIQRLIARSLRAAVDLKKLGEYTITLDCDVIQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTAAI+GA VAL D L +M + + LK VAA+S G++ + DL+Y
Sbjct: 121 ADGGTRTAAISGACVALVDALNNMVEQGKIAKS--PLKSMVAAVSVGIVNQEALCDLEYV 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
EDS + D N VM D G ++EVQG+AE FS + A+L LAK + + + Q++ +
Sbjct: 179 EDSAAETDMNVVMMDDGRMIEVQGTAEGEPFSHEELLALLALAKTGLNTIFEAQREALK 237
>gi|160872895|ref|ZP_02063027.1| ribonuclease PH [Rickettsiella grylli]
gi|159121694|gb|EDP47032.1| ribonuclease PH [Rickettsiella grylli]
Length = 237
Score = 166 bits (419), Expect = 3e-39, Method: Composition-based stats.
Identities = 119/240 (49%), Positives = 155/240 (64%), Gaps = 4/240 (1%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR S R +++R I+L R + YAEGS V FG T +L TA++ VP +++ + HGWIT
Sbjct: 1 MRASQRALDELRAITLIRSYTNYAEGSVWVAFGQTKVLCTASIIPGVPKFLKGSNHGWIT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPR+T R REA G+Q GRS EIQR+IGR LR VDL LG I +DCDVIQ
Sbjct: 61 AEYGMLPRATHTRSDREASRGKQTGRSLEIQRLIGRVLRMSVDLKQLGENTIFLDCDVIQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTAAITGA VAL D L M+ VAA+S G+ G ++DLDY
Sbjct: 121 ADGGTRTAAITGASVALKDALATMK----GEMKYNPWCFLVAAVSVGIYKGQALLDLDYE 176
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
EDS ++D N +MT+ G ++E+Q +AE+A FS+ +LNLA+ I +K QK+V+
Sbjct: 177 EDSHAEMDMNVIMTEQGKLLEIQATAEKAAFSKQQLNQLLNLAETGIKQCVKKQKEVLGE 236
>gi|153876824|ref|ZP_02003946.1| ribonuclease PH [Beggiatoa sp. PS]
gi|152066712|gb|EDN66054.1| ribonuclease PH [Beggiatoa sp. PS]
Length = 240
Score = 166 bits (419), Expect = 3e-39, Method: Composition-based stats.
Identities = 121/242 (50%), Positives = 170/242 (70%), Gaps = 2/242 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR SGR N++R+I+ TR + +AEGS L +FG T ++ +++E+VP +I++ K GW+T
Sbjct: 1 MRPSGRAPNELRQINFTRHYTCHAEGSVLAEFGRTKVICNVSIDERVPRFIKDKKSGWLT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPRST +R+ REA GRQGGR+ EIQR+IGR+LR+VV+L ALG R + IDCDVIQ
Sbjct: 61 AEYGMLPRSTHSRMSREASRGRQGGRTLEIQRLIGRSLRAVVNLEALGERTVNIDCDVIQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTAAITG+++AL D + + + G +AA+S G+ G PI+DLDY
Sbjct: 121 ADGGTRTAAITGSYIALVDAM--QHLLKKRLIRKNPIHGAIAAVSVGIYKGIPILDLDYN 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
EDS + D N +M D+ VE+QG+AE F QD ML+LAK+ + L++ Q V+++
Sbjct: 179 EDSDAETDMNIIMNDAFAYVEIQGTAEGHAFRQDELQTMLSLAKEGTSQLLEKQNAVLND 238
Query: 241 EV 242
E+
Sbjct: 239 EL 240
>gi|84514911|ref|ZP_01002274.1| ribonuclease PH [Loktanella vestfoldensis SKA53]
gi|84511070|gb|EAQ07524.1| ribonuclease PH [Loktanella vestfoldensis SKA53]
Length = 235
Score = 166 bits (419), Expect = 3e-39, Method: Composition-based stats.
Identities = 125/239 (52%), Positives = 164/239 (68%), Gaps = 4/239 (1%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR SGRQ N+MR +++ V+ +AEGSCL+K G+TH+L TAT++++VP +++N+ GW+T
Sbjct: 1 MRPSGRQINEMRNVTIETNVTMHAEGSCLIKCGNTHVLCTATIDDRVPPFLKNSGLGWVT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPR+T R++R Q GR+QEIQR+IGR+LR+ VD ALG RQII+DCDVIQ
Sbjct: 61 AEYGMLPRATNTRMRR-EAKEGQSGRTQEIQRLIGRSLRAGVDRVALGERQIIVDCDVIQ 119
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTR A+ITG WVAL + + V VAAISCG+ G ++DLDY
Sbjct: 120 ADGGTRCASITGGWVALKLAVLKLMKTGQIISDPLV--DPVAAISCGIYAGQEVLDLDYP 177
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
EDS VD NFVMT G +VEVQ SAE ATFS+ +L LA+ +A+L LQ +
Sbjct: 178 EDSEAGVDGNFVMTG-GRLVEVQMSAEGATFSRAQMDGLLGLAEKGVAELTALQLAAVR 235
>gi|254805268|ref|YP_003083489.1| ribonuclease PH [Neisseria meningitidis alpha14]
gi|254668810|emb|CBA06795.1| ribonuclease PH [Neisseria meningitidis alpha14]
gi|325136604|gb|EGC59205.1| ribonuclease PH [Neisseria meningitidis M0579]
Length = 242
Score = 165 bits (418), Expect = 3e-39, Method: Composition-based stats.
Identities = 116/239 (48%), Positives = 168/239 (70%), Gaps = 3/239 (1%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+R S R + +R+I +T + +GSCL++ G+T ++ TA+++E VP ++R GW+T
Sbjct: 5 IRTS-RAADSLRDIKITPHFLPHTDGSCLIECGNTKVICTASVDENVPPFLRGKNQGWVT 63
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLP ST +R++REA +G+Q GR+QEIQR+IGR+LR+VVD+ LG RQI+IDCDVIQ
Sbjct: 64 AEYGMLPASTASRMRREASAGKQSGRTQEIQRLIGRSLRAVVDMEKLGERQILIDCDVIQ 123
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+ITGA+VAL + + ++ VAA+S G++ G P++DLDY
Sbjct: 124 ADGGTRTASITGAFVALQIAVGKLVSD--GILSENPIREAVAAVSVGVVNGVPLLDLDYP 181
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
EDS D D N VMT SG I+E+QG+AE A FS D ++ LA+ I +L++ Q++ +S
Sbjct: 182 EDSGCDSDVNIVMTASGKIIEIQGTAEDAPFSLDELGKLVALAQKGIGELLQHQQNALS 240
>gi|297625967|ref|YP_003687730.1| ribonuclease PH (RNase PH) (tRNA nucleotidyltransferase)
[Propionibacterium freudenreichii subsp. shermanii
CIRM-BIA1]
gi|296921732|emb|CBL56290.1| Ribonuclease PH (RNase PH) (tRNA nucleotidyltransferase)
[Propionibacterium freudenreichii subsp. shermanii
CIRM-BIA1]
Length = 253
Score = 165 bits (418), Expect = 3e-39, Method: Composition-based stats.
Identities = 115/238 (48%), Positives = 159/238 (66%), Gaps = 2/238 (0%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R GR +Q+R +S+TR +AEGSCL++ G T +L A++ E VP W R + GW+T+
Sbjct: 10 RSDGRSLDQLRPVSITRHWLDHAEGSCLIEAGRTRVLVAASVTEGVPRWRRGSGLGWVTS 69
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
EY MLPR+T R RE+ G+ GR+ EI R+IGR+LR+V+D ALG I++D DV+QA
Sbjct: 70 EYEMLPRATNTRNDRESRRGKISGRTHEISRLIGRSLRAVIDYKALGENTIVVDADVLQA 129
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
DGGTRTA+ITGA+VALHD ++ + + + L G V+AIS G++ G P++DL Y E
Sbjct: 130 DGGTRTASITGAYVALHDAVEWLRER--GSLAGEPLTGSVSAISVGIVKGVPMLDLAYDE 187
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
DST DVD N V T +G VEVQG+AE ATF + +L+LA +L LQ+ VI+
Sbjct: 188 DSTADVDMNIVATGTGDFVEVQGTAEGATFDRKLLGRLLDLADKGNRELTDLQQRVIA 245
>gi|296314065|ref|ZP_06864006.1| tRNA nucleotidyltransferase [Neisseria polysaccharea ATCC 43768]
gi|296839317|gb|EFH23255.1| tRNA nucleotidyltransferase [Neisseria polysaccharea ATCC 43768]
Length = 241
Score = 165 bits (418), Expect = 3e-39, Method: Composition-based stats.
Identities = 115/239 (48%), Positives = 167/239 (69%), Gaps = 3/239 (1%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+R S R + +R+I +T + +GSCL++ G+T ++ TA+++E VP ++R GW+T
Sbjct: 5 IRTS-RAADSLRDIKITPHFLPHTDGSCLIECGNTKVICTASIDENVPPFLRGKNQGWVT 63
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLP ST +R++REA +G+Q GR+QEIQR+IGR+LR+VVD+ LG RQI+IDCDVIQ
Sbjct: 64 AEYGMLPASTASRMRREASAGKQSGRTQEIQRLIGRSLRAVVDMEKLGERQILIDCDVIQ 123
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+ITGA+VAL + + ++ VAA+S G++ G P++DLDY
Sbjct: 124 ADGGTRTASITGAFVALQIAVGKLVSD--GILTENPIREAVAAVSAGVVNGVPLLDLDYP 181
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
EDS D D N VMT SG I+E+QG+AE A FS + ++ LA+ I +L++ QK ++
Sbjct: 182 EDSGCDSDVNIVMTASGKIIEIQGTAEGAPFSLEELGKLIGLAEKGIRELVRYQKAALN 240
>gi|254439955|ref|ZP_05053449.1| ribonuclease PH [Octadecabacter antarcticus 307]
gi|198255401|gb|EDY79715.1| ribonuclease PH [Octadecabacter antarcticus 307]
Length = 235
Score = 165 bits (418), Expect = 4e-39, Method: Composition-based stats.
Identities = 123/239 (51%), Positives = 168/239 (70%), Gaps = 4/239 (1%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR SGR + MR IS+ V+++AEGSCL+K GDT +L TA+++E+VP +++N+ GW+T
Sbjct: 1 MRPSGRTIDGMRPISIEIDVTRHAEGSCLIKCGDTQVLCTASIDERVPSFLKNSGLGWVT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPR+T R++R Q GR+QEIQR+IGR+LR+ +D ALG RQI+IDCDVIQ
Sbjct: 61 AEYGMLPRATNTRMRR-EAKNGQSGRTQEIQRLIGRSLRAGIDRVALGERQIVIDCDVIQ 119
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTR A+ITG WVAL +Q + + +S L VAA+SCG+ G ++DLDY
Sbjct: 120 ADGGTRCASITGGWVALKLAVQKL--MNAGDVISDPLLIPVAAVSCGIYAGQSVLDLDYP 177
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
EDS VD NFVMT ++E+Q SAE +TF++D AM++LA IA+L +Q +S
Sbjct: 178 EDSEAGVDGNFVMTAD-KLIEIQMSAEGSTFTRDQMNAMMDLAHKGIAELTAVQIASVS 235
>gi|126734415|ref|ZP_01750162.1| ribonuclease PH [Roseobacter sp. CCS2]
gi|126717281|gb|EBA14145.1| ribonuclease PH [Roseobacter sp. CCS2]
Length = 235
Score = 165 bits (418), Expect = 4e-39, Method: Composition-based stats.
Identities = 120/239 (50%), Positives = 167/239 (69%), Gaps = 4/239 (1%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR SGRQ N+MRE+S+ V+ +AEGSCL+K G+TH+L TAT++E+VP +++N+ GW+T
Sbjct: 1 MRPSGRQTNEMREVSIETGVTMHAEGSCLIKCGNTHVLCTATIDERVPPFLKNSGLGWVT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPR+T R++R Q GR+QEIQR+IGR+LR+ VD AL RQI++DCDVIQ
Sbjct: 61 AEYGMLPRATNTRMRR-EAKNGQSGRTQEIQRLIGRSLRAGVDRVALSERQIVVDCDVIQ 119
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTR A+ITG WVAL +Q + + + VAAISCG+ G ++DLDY
Sbjct: 120 ADGGTRCASITGGWVALKLAVQKLMKAGDVISDPLI--DPVAAISCGIYAGQEVLDLDYP 177
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
EDS VD NFVMT G ++E+Q SAE +TF++ +++LA+ + +L +Q +S
Sbjct: 178 EDSEAGVDGNFVMTG-GKMIEIQMSAEGSTFTRAQMDGLVDLAEKGVGELTAIQLAAVS 235
>gi|158421687|ref|YP_001522979.1| polynucleotide phosphorylase/polyadenylase [Azorhizobium
caulinodans ORS 571]
gi|158328576|dbj|BAF86061.1| polyribonucleotide nucleotidyltransferase [Azorhizobium caulinodans
ORS 571]
Length = 756
Score = 165 bits (418), Expect = 4e-39, Method: Composition-based stats.
Identities = 47/244 (19%), Positives = 94/244 (38%), Gaps = 18/244 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
+R+ GR +R I + A GS L G+T L ATL +E+ + T
Sbjct: 349 IRIDGRDVKTVRPIVSEVGILPRAHGSALFTRGETQALVVATLGTGEDEQFIDSLEGTYK 408
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P S G + + R+ G + RA+ ++ + +
Sbjct: 409 EHFLLHYNFPPFSVGETGRMGSPGRREIGHGKL----AWRAIHPMLPAKHEFPYTLRVVS 464
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
++++++G + A + G ++L D ++ + +L+G A+
Sbjct: 465 EILESNGSSSMATVCGTSLSLMDAGVPLKSPVAGIAMGLILEGEKFAVLSD--------- 515
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T+SG + +Q + A +++ L AKD A ++
Sbjct: 516 ILGDEDHLGDMDFKVAGTESG-VTALQMDIKIAGITEEIMKVALAQAKDGRAHILGEMSK 574
Query: 237 VISN 240
+++
Sbjct: 575 ALTS 578
Score = 102 bits (253), Expect = 5e-20, Method: Composition-based stats.
Identities = 31/228 (13%), Positives = 68/228 (29%), Gaps = 27/228 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----HGWITAEYGML 66
R + L +++ A+G+ +GDT +L T + + T G +
Sbjct: 46 RTLVLETGKMARQADGAVFASYGDTTVLATVVSAREPKPGQDFFPLTVNYQEKTYAAGRI 105
Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
P R GR + + R+I R +R + Q+++ +
Sbjct: 106 PGGYFKR------EGRPSEKETLVSRLIDRPIRPLFADGYKNDTQVVVTVLAHDLENDPD 159
Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
++ A A G + G + +++ E
Sbjct: 160 VLSMVAASAA-------------LTLSGVPFMGPIGGARVGFVGDEYVLNPTIEELKDSA 206
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
+D T ++ V+ A+ S++ + +I+
Sbjct: 207 LDLVVAGTSD-AVLMVESEAKE--LSEEVMLGAVMFGHRHFQPVIEAI 251
>gi|288573194|ref|ZP_06391551.1| ribonuclease PH [Dethiosulfovibrio peptidovorans DSM 11002]
gi|288568935|gb|EFC90492.1| ribonuclease PH [Dethiosulfovibrio peptidovorans DSM 11002]
Length = 257
Score = 165 bits (418), Expect = 4e-39, Method: Composition-based stats.
Identities = 118/238 (49%), Positives = 159/238 (66%), Gaps = 2/238 (0%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R GR MR++S R S YAEGSCLV FG T +L TA++EEKVP ++R + GW+TA
Sbjct: 10 RADGRSGYDMRKVSFQRGFSCYAEGSCLVSFGKTKVLCTASVEEKVPPFLRGSDRGWVTA 69
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
EY +LPRST RV R+ G+ GRS EIQR++GR+LR+ VD+ +LG R I IDCDV+QA
Sbjct: 70 EYSLLPRSTSTRVPRDISRGKLNGRSSEIQRLVGRSLRAAVDMESLGERTIWIDCDVLQA 129
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
DGGTR+AA+TG +VAL D L+H+ S L+ +VAA+S G + G + DL Y E
Sbjct: 130 DGGTRSAAVTGGFVALVDALRHLWR--IGKLKSIPLRSYVAAVSVGKISGKLLTDLCYDE 187
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
DS +VD N VM G ++E+QG+ E+ TFS+D ML+LA + +LI LQ+ +
Sbjct: 188 DSRAEVDMNVVMDGLGRLIEIQGTGEKDTFSRDEMNGMLDLAFRSVEELIVLQERALE 245
>gi|15677352|ref|NP_274507.1| ribonuclease PH [Neisseria meningitidis MC58]
gi|21759417|sp|Q9JYN5|RNPH_NEIMB RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|7226741|gb|AAF41855.1| ribonuclease PH [Neisseria meningitidis MC58]
gi|316986046|gb|EFV64983.1| ribonuclease PH [Neisseria meningitidis H44/76]
gi|325140644|gb|EGC63162.1| ribonuclease PH [Neisseria meningitidis CU385]
gi|325199896|gb|ADY95351.1| ribonuclease PH [Neisseria meningitidis H44/76]
Length = 242
Score = 165 bits (418), Expect = 4e-39, Method: Composition-based stats.
Identities = 116/239 (48%), Positives = 168/239 (70%), Gaps = 3/239 (1%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+R+S R + +R+I +T + +GSCL++ G+T ++ TA+++E VP ++R GW+T
Sbjct: 5 IRIS-RAADSLRDIKITPHFLPHTDGSCLIECGNTKVICTASIDENVPPFLRGKNQGWVT 63
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLP ST +R+ REA +G+Q GR+QEIQR+IGR+LR+VVD+ LG RQI+IDCDVIQ
Sbjct: 64 AEYGMLPASTASRMLREASAGKQSGRTQEIQRLIGRSLRAVVDMEKLGERQILIDCDVIQ 123
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+ITGA+VAL + + ++ VAA+S G++ G P++DLDY
Sbjct: 124 ADGGTRTASITGAFVALQIAVGKLVSD--GILSENPIREAVAAVSVGVVNGVPLLDLDYP 181
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
EDS D D N VMT SG I+E+QG+AE A FS D ++ LA+ I +L++ Q++ +S
Sbjct: 182 EDSGCDSDVNIVMTASGKIIEIQGTAEDAPFSLDELGKLVALAQKGIGELLQHQQNALS 240
>gi|261346766|ref|ZP_05974410.1| tRNA nucleotidyltransferase [Providencia rustigianii DSM 4541]
gi|282565165|gb|EFB70700.1| tRNA nucleotidyltransferase [Providencia rustigianii DSM 4541]
Length = 237
Score = 165 bits (418), Expect = 4e-39, Method: Composition-based stats.
Identities = 116/239 (48%), Positives = 160/239 (66%), Gaps = 2/239 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR +GR +QMR I +TR +K+AEGS L++FGDT +L TAT+E+ VP +++ GW+T
Sbjct: 1 MRPAGRLADQMRPIKITRNYTKHAEGSVLIEFGDTKVLCTATVEDGVPRFLKGQGQGWVT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPR+T +R +REA G+Q GR+ EIQR+I R+LR+ VDL LG I +DCDVIQ
Sbjct: 61 AEYGMLPRATNSRNQREAAKGKQTGRTMEIQRLIARSLRAAVDLKKLGEYTITLDCDVIQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+I+GA VAL D L +M + LK VAA+S G++ + DL+Y
Sbjct: 121 ADGGTRTASISGACVALVDALNNMIAQGKITKS--PLKAMVAAVSVGIVKQEALCDLEYV 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
EDS + D N VM D G ++EVQG+AE FS + +L LAK + + + Q++ +
Sbjct: 179 EDSAAETDMNVVMMDDGRMIEVQGTAEGEPFSHEELLELLALAKTGLDTIFEAQREALK 237
>gi|238028147|ref|YP_002912378.1| polynucleotide phosphorylase/polyadenylase [Burkholderia glumae
BGR1]
gi|237877341|gb|ACR29674.1| Polyribonucleotide nucleotidyltransferase [Burkholderia glumae
BGR1]
Length = 709
Score = 165 bits (418), Expect = 4e-39, Method: Composition-based stats.
Identities = 47/242 (19%), Positives = 94/242 (38%), Gaps = 18/242 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHG 57
R+ GR +R I + V GS L G+T L AT +E++ +
Sbjct: 322 RIDGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQALVVATLGTKGDEQIIDALEGEYRD 381
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y M P +TG + + R+ G + RAL + + + I + +
Sbjct: 382 RFMLHYNMPPFATGETGRVGSPKRREIGHGRL----AKRALVACLPSADEFGYSIRVVSE 437
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ G +AL D M+ + +L+ + A+ +
Sbjct: 438 ITESNGSSSMASVCGGCLALMDAGVPMKAHVAGIAMGLILEDNKFAVLTD---------I 488
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T++G + +Q + +++ L AK+ ++ K+
Sbjct: 489 LGDEDHLGDMDFKVAGTEAG-VTALQMDIKIQGITKEIMQVALAQAKEGRMHILGKMKES 547
Query: 238 IS 239
+S
Sbjct: 548 VS 549
Score = 96.5 bits (238), Expect = 3e-18, Method: Composition-based stats.
Identities = 35/233 (15%), Positives = 71/233 (30%), Gaps = 27/233 (11%)
Query: 13 EISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT----KHGWITAEYGMLP 67
++ L +++ A G+ +V DT +L T + + T G +P
Sbjct: 17 KVRLETGEIARQASGAVIVDVEDTVVLATVVGAKNAKPGQDFFPLTVDYIEKTYSAGKIP 76
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R GR R+I R LR + Q++I I +
Sbjct: 77 GGFFRR------EGRPSEHETLTSRLIDRPLRPLFPEGFYNEVQVVIHVLSINPEVPADI 130
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
A+ GA A G V A + +++ + +
Sbjct: 131 PALIGASAA-------------LAVSGLPFNGPVGAARVAYIDNQYVLNPTRDQIKASSL 177
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
D T+ ++ V+ +E +D + +++ I +++
Sbjct: 178 DLVVAGTER-AVLMVE--SEADQLPEDVMLGAVVFGHEQMQTAIDAIHELVRE 227
>gi|88811938|ref|ZP_01127191.1| ribonuclease PH [Nitrococcus mobilis Nb-231]
gi|88790822|gb|EAR21936.1| ribonuclease PH [Nitrococcus mobilis Nb-231]
Length = 238
Score = 165 bits (418), Expect = 4e-39, Method: Composition-based stats.
Identities = 124/239 (51%), Positives = 167/239 (69%), Gaps = 2/239 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR SGR ++MR + +TR +K+AEGS LV+FGDT +L A++EE+VP W+RN+ GWIT
Sbjct: 1 MRPSGRHNHEMRAVRITRGFTKHAEGSALVEFGDTKILCNASVEERVPPWLRNSGRGWIT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEY MLPR+T +R REAV GRQ GR+ EIQR+IGR+LR+ +DL ALG R+IIIDCDV+Q
Sbjct: 61 AEYAMLPRATQSRNDREAVRGRQQGRTVEIQRLIGRSLRAAIDLQALGERRIIIDCDVLQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTAAITG +VAL D LQ + L GHVAA+S G+ G ++DLDY
Sbjct: 121 ADGGTRTAAITGGYVALADALQSLIKK--GLLKRPPLFGHVAAVSVGIYRGKVVLDLDYA 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
ED+ + D N VM + G ++E+QG+AE F + M++LA++ LI+ Q+ +
Sbjct: 179 EDAEAETDMNIVMNEVGALIEIQGTAEGHAFRRVELGQMIDLAEEGTRSLIEAQRQALE 237
>gi|157373519|ref|YP_001472119.1| tRNA nucleotidyltransferase [Shewanella sediminis HAW-EB3]
gi|189043777|sp|A8FQ68|RNPH_SHESH RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|157315893|gb|ABV34991.1| tRNA nucleotidyltransferase [Shewanella sediminis HAW-EB3]
Length = 237
Score = 165 bits (418), Expect = 4e-39, Method: Composition-based stats.
Identities = 123/239 (51%), Positives = 165/239 (69%), Gaps = 2/239 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR S R Q R +++TR+ + +AEGS LV+FGDT +L TA+ EE VP +++ GW+T
Sbjct: 1 MRPSDRTPAQSRPVTITRQFTAHAEGSVLVEFGDTKVLCTASFEEGVPRFLKGKGQGWVT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPRST +R+ REA G+Q GR+QEIQR+IGR+LR+ VD+ ALG I+IDCDVIQ
Sbjct: 61 AEYGMLPRSTHSRMNREAARGKQSGRTQEIQRLIGRSLRAAVDMKALGENTIVIDCDVIQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTAAITGA VAL D L + LK +AA+S G+ G PI DL+Y
Sbjct: 121 ADGGTRTAAITGACVALVDSLNW--ARGKGILKTNPLKFLIAAVSVGIYKGEPICDLEYI 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
EDS + D N VMT++G ++E+QG+AE FS + ++L LAK I +++ +QK +S
Sbjct: 179 EDSEAETDMNVVMTETGKMIEIQGTAEGEPFSHEELLSLLELAKHGIREIVDIQKAALS 237
>gi|325128546|gb|EGC51419.1| ribonuclease PH [Neisseria meningitidis N1568]
gi|325143439|gb|EGC65766.1| ribonuclease PH [Neisseria meningitidis M01-240013]
Length = 242
Score = 165 bits (418), Expect = 4e-39, Method: Composition-based stats.
Identities = 116/239 (48%), Positives = 168/239 (70%), Gaps = 3/239 (1%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+R S R + +R+I +T + +GSCL++ G+T ++ TA+++E VP ++R GW+T
Sbjct: 5 IRTS-RAADSLRDIKITPHFLPHTDGSCLIECGNTKVICTASIDENVPPFLRGKNQGWVT 63
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLP ST +R++REA +G+Q GR+QEIQR+IGR+LR+VVD+ LG RQI+IDCDVIQ
Sbjct: 64 AEYGMLPASTASRMRREASAGKQSGRTQEIQRLIGRSLRAVVDMEKLGERQILIDCDVIQ 123
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+ITGA+VAL + + ++ VAA+S G++ G P++DLDY
Sbjct: 124 ADGGTRTASITGAFVALQIAVGKLVSD--GILSENPIREAVAAVSVGVVNGVPLLDLDYP 181
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
EDS D D N VMT SG I+E+QG+AE A FS D ++ LA+ I +L++ Q++ +S
Sbjct: 182 EDSGCDSDVNIVMTASGKIIEIQGTAEDAPFSLDELGKLVALAQKGIGELLQHQQNALS 240
>gi|298345213|ref|YP_003717900.1| ribonuclease PH [Mobiluncus curtisii ATCC 43063]
gi|304390773|ref|ZP_07372725.1| tRNA nucleotidyltransferase [Mobiluncus curtisii subsp. curtisii
ATCC 35241]
gi|298235274|gb|ADI66406.1| ribonuclease PH [Mobiluncus curtisii ATCC 43063]
gi|304325656|gb|EFL92902.1| tRNA nucleotidyltransferase [Mobiluncus curtisii subsp. curtisii
ATCC 35241]
Length = 257
Score = 165 bits (418), Expect = 4e-39, Method: Composition-based stats.
Identities = 113/237 (47%), Positives = 151/237 (63%), Gaps = 2/237 (0%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R GR+ +Q+RE++L EG LV G+T +L +A+L E VP W +++ GW+TA
Sbjct: 7 RADGRRMDQLREVTLHMDWVSAPEGCVLVSCGNTRVLCSASLTEGVPRWRKDSGFGWVTA 66
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
EY MLPR+T R RE+V G+ GR+ EI R+IGRALR+ VD +ALG I IDCDV+QA
Sbjct: 67 EYAMLPRATDTRNTRESVKGKISGRTSEISRLIGRALRAAVDYAALGENTIAIDCDVLQA 126
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
DGGTRTA+ITGAW+AL + D F + V AIS G++ P +DL Y E
Sbjct: 127 DGGTRTASITGAWIALQRAIAVGRDS--GFIPGNPTRDSVCAISVGIIDSIPRLDLPYEE 184
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
DS + D N VMT SG +VEVQG+AE A FS+ A+L+LA+ DL +LQ+ +
Sbjct: 185 DSRAETDMNVVMTGSGSLVEVQGTAEGAPFSRAELDALLDLAQAGCRDLTRLQRAAV 241
>gi|152967706|ref|YP_001363490.1| ribonuclease PH [Kineococcus radiotolerans SRS30216]
gi|151362223|gb|ABS05226.1| ribonuclease PH [Kineococcus radiotolerans SRS30216]
Length = 248
Score = 165 bits (418), Expect = 4e-39, Method: Composition-based stats.
Identities = 107/226 (47%), Positives = 144/226 (63%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R GR +++R +++TR +AEGS LV+FG T +L A+ E VP W + + GW+TA
Sbjct: 10 RADGRAVDELRPVTITRNWLDHAEGSVLVEFGRTRVLCAASFTEGVPRWRKGSGQGWVTA 69
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
EY MLPR+T R RE+V G+ GGR+ EI R+IGR+LR+VVD LG I++DCDV+QA
Sbjct: 70 EYAMLPRATNTRGDRESVKGKIGGRTHEISRLIGRSLRAVVDTKQLGENTIVLDCDVLQA 129
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
DGGTRTAA+TGA+VAL D + Q L G V+AIS G++ G P++DL Y E
Sbjct: 130 DGGTRTAAVTGAYVALADAISWARGQGIVKASRQPLTGSVSAISVGVVDGVPVLDLPYVE 189
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRI 227
D + D N V+T G VEVQG+AE F + A+L+LA
Sbjct: 190 DVRAETDMNVVVTGDGRFVEVQGTAEGTPFDRAELDALLDLAVGGC 235
>gi|113475741|ref|YP_721802.1| ribonuclease PH [Trichodesmium erythraeum IMS101]
gi|110166789|gb|ABG51329.1| RNAse PH [Trichodesmium erythraeum IMS101]
Length = 238
Score = 165 bits (418), Expect = 4e-39, Method: Composition-based stats.
Identities = 100/238 (42%), Positives = 148/238 (62%), Gaps = 4/238 (1%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R GR+ NQ+R IS +K+A S L KFG+T +L T++ VP ++ +T GW+TA
Sbjct: 5 RPDGRKSNQLRPISFELDYTKFATSSVLTKFGETKVLCNVTIQPGVPKFLADTGQGWLTA 64
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
EY MLP +T R ++ + GR+QEIQR+IGR+LR+ +D++ LG R II+D DV+QA
Sbjct: 65 EYRMLPAATSER--QQREFMKLSGRTQEIQRLIGRSLRAALDMNLLGERTIIVDADVLQA 122
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
D GTRT +ITG +VA+ + + + D + + VAA+S G+L P +DL+Y E
Sbjct: 123 DAGTRTVSITGGFVAVANAISKLIDQGKLERS--PILHQVAAVSVGLLEKEPYLDLNYPE 180
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
D ++D N VM D ++EVQG+AE +FS+ +L+LA+ I L Q+ VIS
Sbjct: 181 DVAAEIDFNVVMNDQPALIEVQGTAEIGSFSRTQLNQILDLAEAGIKKLFDAQRQVIS 238
>gi|209523065|ref|ZP_03271622.1| ribonuclease PH [Arthrospira maxima CS-328]
gi|209496652|gb|EDZ96950.1| ribonuclease PH [Arthrospira maxima CS-328]
Length = 242
Score = 165 bits (418), Expect = 4e-39, Method: Composition-based stats.
Identities = 96/238 (40%), Positives = 146/238 (61%), Gaps = 4/238 (1%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R GRQ +Q+R + +++A S L K G+T +L T T++ VP ++++T GW+TA
Sbjct: 6 RPDGRQPHQLRPVQFELDYTQFAAASVLAKSGNTQVLCTVTIQPGVPRFLQDTGKGWLTA 65
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
EY MLP +T R R + GR+QEIQR+IGR+LR+ VDL A+G + +D DV+QA
Sbjct: 66 EYRMLPGATPQRQPR--ELMKLSGRTQEIQRLIGRSLRAAVDLQAMGEITVTVDADVLQA 123
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
D GTRT +ITG +VAL M + + + +AAIS GM+ G P++DL+Y E
Sbjct: 124 DAGTRTTSITGGFVALAHAFNKMVKQGQLKRSPIIHQ--IAAISVGMMHGEPLLDLNYQE 181
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
D D+D N VM D I+E+QG+AE + +++ +L+ A+ I +L +LQ+ V+
Sbjct: 182 DVAADIDFNVVMRDDLGIIELQGTAEAESLNRNQLNQILDYAEKGITELCQLQRQVLG 239
>gi|187471094|sp|A8IGA3|PNP_AZOC5 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
Length = 724
Score = 165 bits (418), Expect = 4e-39, Method: Composition-based stats.
Identities = 47/244 (19%), Positives = 94/244 (38%), Gaps = 18/244 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
+R+ GR +R I + A GS L G+T L ATL +E+ + T
Sbjct: 317 IRIDGRDVKTVRPIVSEVGILPRAHGSALFTRGETQALVVATLGTGEDEQFIDSLEGTYK 376
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P S G + + R+ G + RA+ ++ + +
Sbjct: 377 EHFLLHYNFPPFSVGETGRMGSPGRREIGHGKL----AWRAIHPMLPAKHEFPYTLRVVS 432
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
++++++G + A + G ++L D ++ + +L+G A+
Sbjct: 433 EILESNGSSSMATVCGTSLSLMDAGVPLKSPVAGIAMGLILEGEKFAVLSD--------- 483
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T+SG + +Q + A +++ L AKD A ++
Sbjct: 484 ILGDEDHLGDMDFKVAGTESG-VTALQMDIKIAGITEEIMKVALAQAKDGRAHILGEMSK 542
Query: 237 VISN 240
+++
Sbjct: 543 ALTS 546
Score = 101 bits (252), Expect = 7e-20, Method: Composition-based stats.
Identities = 31/228 (13%), Positives = 68/228 (29%), Gaps = 27/228 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----HGWITAEYGML 66
R + L +++ A+G+ +GDT +L T + + T G +
Sbjct: 14 RTLVLETGKMARQADGAVFASYGDTTVLATVVSAREPKPGQDFFPLTVNYQEKTYAAGRI 73
Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
P R GR + + R+I R +R + Q+++ +
Sbjct: 74 PGGYFKR------EGRPSEKETLVSRLIDRPIRPLFADGYKNDTQVVVTVLAHDLENDPD 127
Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
++ A A G + G + +++ E
Sbjct: 128 VLSMVAASAA-------------LTLSGVPFMGPIGGARVGFVGDEYVLNPTIEELKDSA 174
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
+D T ++ V+ A+ S++ + +I+
Sbjct: 175 LDLVVAGTSD-AVLMVESEAKE--LSEEVMLGAVMFGHRHFQPVIEAI 219
>gi|189425094|ref|YP_001952271.1| ribonuclease PH [Geobacter lovleyi SZ]
gi|226736912|sp|B3E3D2|RNPH_GEOLS RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|189421353|gb|ACD95751.1| ribonuclease PH [Geobacter lovleyi SZ]
Length = 238
Score = 165 bits (418), Expect = 4e-39, Method: Composition-based stats.
Identities = 117/236 (49%), Positives = 159/236 (67%), Gaps = 2/236 (0%)
Query: 5 GRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYG 64
GR + +R I++TR K+ EG+ LV+FGDT ++ TA++EE VP ++R GW+TAEY
Sbjct: 5 GRGLSDLRPITMTRHFIKHPEGAVLVEFGDTRVICTASVEESVPPFLRGKGTGWVTAEYS 64
Query: 65 MLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGG 124
MLPR+T R REA G+Q GR+ EIQR+IGR+LR+V D++ LG R I +DCDVIQADGG
Sbjct: 65 MLPRATHTRSSREAAKGKQSGRTLEIQRLIGRSLRAVTDMTKLGERTIYLDCDVIQADGG 124
Query: 125 TRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDST 184
TRTA+ITGA+VAL D + + LK VAA+S G++ G ++DLDY EDS+
Sbjct: 125 TRTASITGAYVALVDAVSAL--LVQGKITGNPLKEAVAAVSVGIVDGQAVLDLDYQEDSS 182
Query: 185 IDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
+VD NFVMT SG VEVQG+AE F+ + AM +LA I L Q++ ++
Sbjct: 183 AEVDMNFVMTSSGRFVEVQGTAEAEPFTLEQMDAMRSLAMTGINQLFTYQQEALAR 238
>gi|262040695|ref|ZP_06013932.1| tRNA nucleotidyltransferase [Klebsiella pneumoniae subsp.
rhinoscleromatis ATCC 13884]
gi|329996940|ref|ZP_08302637.1| tRNA nucleotidyltransferase [Klebsiella sp. MS 92-3]
gi|259041961|gb|EEW42995.1| tRNA nucleotidyltransferase [Klebsiella pneumoniae subsp.
rhinoscleromatis ATCC 13884]
gi|328539230|gb|EGF65259.1| tRNA nucleotidyltransferase [Klebsiella sp. MS 92-3]
Length = 251
Score = 165 bits (417), Expect = 5e-39, Method: Composition-based stats.
Identities = 125/240 (52%), Positives = 163/240 (67%), Gaps = 2/240 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR +GR NQ+R ++LTR +K+AEGS LV+FGDT +L TA+++E VP +++ GWIT
Sbjct: 14 MRPAGRSANQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIDEGVPRFLKGQGQGWIT 73
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPRST R REA G+QGGR+ EIQR+I RALR+ VDL ALG I +DCDV+Q
Sbjct: 74 AEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQ 133
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+ITGA VAL D L + + +KG VAA+S G++ G I DL+Y
Sbjct: 134 ADGGTRTASITGACVALADALNKLVAA--GKLKTNPMKGMVAAVSVGIVNGEAICDLEYI 191
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
EDS + D N VMT+ G I+EVQG+AE F+ + +L LA+ I +I QK + N
Sbjct: 192 EDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLTLLALARGGIESIITTQKAALEN 251
>gi|167947111|ref|ZP_02534185.1| ribonuclease PH [Endoriftia persephone 'Hot96_1+Hot96_2']
Length = 239
Score = 165 bits (417), Expect = 5e-39, Method: Composition-based stats.
Identities = 125/223 (56%), Positives = 162/223 (72%), Gaps = 2/223 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR SGRQ +Q+R I TR +K+AEGS LV+FGDT ++ TA++EE+VP W+R GW+T
Sbjct: 1 MRPSGRQPDQLRPIRFTRHYTKHAEGSVLVEFGDTKVICTASVEERVPGWMRGQGRGWVT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPRST +R+ REA G+QGGR+ EIQR+IGR+LR+ +DL ALG R I +DCDVIQ
Sbjct: 61 AEYGMLPRSTDSRMGREASRGKQGGRTMEIQRLIGRSLRAAIDLQALGERSIALDCDVIQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+ITGAW+ALHD + + + G VA++S G+ G PI+DLDY
Sbjct: 121 ADGGTRTASITGAWIALHDAV--QHILQQDLLKTDPMIGPVASVSVGVHKGTPILDLDYA 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLA 223
EDS+ + D N VM D G +EVQG+AE A +S+ AML+LA
Sbjct: 179 EDSSAETDMNVVMNDQGGFIEVQGTAEAAAYSRQELDAMLDLA 221
>gi|310286881|ref|YP_003938139.1| rph Ribonuclease PH [Bifidobacterium bifidum S17]
gi|309250817|gb|ADO52565.1| rph Ribonuclease PH [Bifidobacterium bifidum S17]
Length = 243
Score = 165 bits (417), Expect = 5e-39, Method: Composition-based stats.
Identities = 109/239 (45%), Positives = 155/239 (64%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+R GR +++R + +TR + EGS L++ G+T ++ TAT VP W +++ GW+T
Sbjct: 3 IRADGRVVDELRPVRITRHFTDVPEGSVLIECGNTRVMCTATFTPSVPRWRKDSGLGWVT 62
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEY MLPR+T R RE+V G+ GGR+ EI R+IGR LR VVD+ ALG QI IDCDV+Q
Sbjct: 63 AEYSMLPRATAERTDRESVRGKVGGRTHEISRLIGRCLRGVVDMKALGENQIQIDCDVLQ 122
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+ITGA+VAL D ++ E + +VLK V+A+S G++ G P++DL Y
Sbjct: 123 ADGGTRTASITGAYVALVDAMRWAEQKRHIRSADRVLKDAVSAVSVGVINGTPMLDLPYI 182
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
EDS D N MT SG +E+QG+AE F++ +L+LA+ +L Q+ +S
Sbjct: 183 EDSQAMTDMNVAMTGSGDFIEIQGTAEHRPFNRAELNTLLDLAEKGNKELQAAQRAALS 241
>gi|254520650|ref|ZP_05132706.1| ribonuclease Ph [Clostridium sp. 7_2_43FAA]
gi|226914399|gb|EEH99600.1| ribonuclease Ph [Clostridium sp. 7_2_43FAA]
Length = 248
Score = 165 bits (417), Expect = 5e-39, Method: Composition-based stats.
Identities = 114/239 (47%), Positives = 158/239 (66%), Gaps = 2/239 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR+ GR+ Q+R +TR +KYAEGS L++ GDT ++ TA++E+KVP +++ GWIT
Sbjct: 1 MRIDGRKNEQVRIAKITRGYTKYAEGSVLIEVGDTKVICTASIEDKVPPFLKGQGEGWIT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEY MLPRSTG R R+ + GR+ EIQR+IGRALRSV+DL ALG + I IDCDVIQ
Sbjct: 61 AEYNMLPRSTGTRKVRDIARLKVDGRTMEIQRLIGRALRSVMDLKALGEKTIWIDCDVIQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRT +ITGA+VAL D + + ++ V+A S G+L I+DL Y
Sbjct: 121 ADGGTRTTSITGAFVALVDAVNKLHKEKPFEV--YPIRKFVSATSVGILNDEKILDLCYE 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
EDS VD N + TD G +E+QG+ E + FS+D +L+LA+ I ++++QKD +
Sbjct: 179 EDSNAKVDMNVIATDEGEFIEIQGTGEESPFSRDDLNDLLDLAQKGIKQMVQIQKDALK 237
>gi|220910436|ref|YP_002485747.1| ribonuclease PH [Cyanothece sp. PCC 7425]
gi|254808586|sp|B8HPC6|RNPH_CYAP4 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|219867047|gb|ACL47386.1| ribonuclease PH [Cyanothece sp. PCC 7425]
Length = 239
Score = 165 bits (417), Expect = 5e-39, Method: Composition-based stats.
Identities = 101/239 (42%), Positives = 147/239 (61%), Gaps = 4/239 (1%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R GRQ +Q+R IS R +++A GS L + G T +L T+ VP ++ GW+TA
Sbjct: 5 RPDGRQSHQLRPISFERGFTRFAAGSVLTRCGQTQVLCNVTVRPGVPKFLEGRGQGWLTA 64
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
EY MLP +T R +E + GR+QEIQR+IGR+LR+ +D LG R +++D DV+QA
Sbjct: 65 EYRMLPAATPQR--QEREMLKLSGRTQEIQRLIGRSLRAALDFDLLGERTLVVDADVLQA 122
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
D GTRT AITG++VAL D + + + ++ +VAA+S G+L G P +DL Y E
Sbjct: 123 DAGTRTTAITGSFVALADAIDQLLQAGELQRS--PIRNYVAAVSVGLLEGEPFLDLSYQE 180
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
D VD N VMT+S I+E+QG+AE +FS+ +L++A+ I +LI QK V+
Sbjct: 181 DVAASVDFNVVMTESLQILELQGTAEGESFSRTQLNQILDVAEVGIRELIAAQKSVLGQ 239
>gi|292486561|ref|YP_003529429.1| ribonuclease PH [Erwinia amylovora CFBP1430]
gi|292897799|ref|YP_003537168.1| ribonuclease PH [Erwinia amylovora ATCC 49946]
gi|291197647|emb|CBJ44742.1| ribonuclease PH [Erwinia amylovora ATCC 49946]
gi|291551976|emb|CBA19013.1| ribonuclease PH [Erwinia amylovora CFBP1430]
gi|312170622|emb|CBX78885.1| ribonuclease PH [Erwinia amylovora ATCC BAA-2158]
Length = 238
Score = 165 bits (417), Expect = 5e-39, Method: Composition-based stats.
Identities = 123/238 (51%), Positives = 163/238 (68%), Gaps = 2/238 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR SGR Q+R ++LTR +K+AEGS LV+FGDT +L TAT+EE VP +++ GW+T
Sbjct: 1 MRPSGRSAQQVRPVTLTRHYTKHAEGSVLVEFGDTKVLCTATIEEGVPRFLKGQGQGWVT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPR+T +R REA G+QGGR+ EIQR+I R+LR+ +DL ALG I +DCDV+Q
Sbjct: 61 AEYGMLPRATHSRNAREAAKGKQGGRTLEIQRLIARSLRAAIDLKALGEFTITLDCDVLQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+ITGA VAL D L H+ + +KG VAAIS G++ G + DL+Y
Sbjct: 121 ADGGTRTASITGACVALADALNHLV--FIGKLKANPMKGMVAAISVGIVNGEALCDLEYV 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
EDS + D N VMT+ G ++EVQG+AE FS + +L LA+ I L+ QK +
Sbjct: 179 EDSAAETDMNVVMTEDGRMIEVQGTAEGEPFSHEELLKLLELARGGIDTLVAAQKAAL 236
>gi|302389789|ref|YP_003825610.1| polyribonucleotide nucleotidyltransferase [Thermosediminibacter
oceani DSM 16646]
gi|302200417|gb|ADL07987.1| polyribonucleotide nucleotidyltransferase [Thermosediminibacter
oceani DSM 16646]
Length = 702
Score = 165 bits (417), Expect = 6e-39, Method: Composition-based stats.
Identities = 47/244 (19%), Positives = 86/244 (35%), Gaps = 18/244 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56
+R GR+ ++R IS + GS L G T +LT AT + ++ + +
Sbjct: 310 IRPDGRKSTEIRPISCEVGILPRTHGSGLFTRGQTQVLTVATLGALGDVQILDGLELEES 369
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P STG R+ G RAL ++ I +
Sbjct: 370 KRFMHHYNFPPYSTGETRMLRGPGRREIGHGAL----AERALEPMIPPEETFPYTIRLVS 425
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V+ ++G T A++ G+ +AL D ++ + + + I
Sbjct: 426 EVLSSNGSTSMASVCGSTLALMDAGVPIKAPVAGIAMGLIKQDDKVTILSD--------- 476
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T G I +Q + + L A++ +++
Sbjct: 477 IQGIEDFLGDMDFKVAGTSKG-ITAIQMDIKIKGIDAEILKKALEQAREGRLYILEKMLA 535
Query: 237 VISN 240
IS+
Sbjct: 536 TISS 539
Score = 117 bits (293), Expect = 1e-24, Method: Composition-based stats.
Identities = 46/234 (19%), Positives = 85/234 (36%), Gaps = 27/234 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKHGWITAEYGML 66
R + +++ A G+ L ++GDT +L TAT E V + G +
Sbjct: 11 RPFIIETGKLAQQANGAVLARYGDTVVLVTATASKEPREGVDFLPLTVDYEERLYAVGKI 70
Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
P R G+ ++ R+I R LR + QII +
Sbjct: 71 PGGFIKR------EGKPSEKAILSARVIDRPLRPLFPKGFRNDIQIIATILSVDQGNTPD 124
Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
AI GA +AL +G V A+S G++ G I++ +
Sbjct: 125 VVAINGASIALC-------------ISDIPFEGPVGAVSVGLVDGNFIINPTVEQYEKSR 171
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
+ T I+ V+ A+ +++ + + I ++K Q+++I+
Sbjct: 172 LRLVVAGTKD-AILMVEAGADE--VTEEEMINAILFGHEEIKKIVKFQEEIIAK 222
>gi|297537320|ref|YP_003673089.1| polyribonucleotide nucleotidyltransferase [Methylotenera sp. 301]
gi|297256667|gb|ADI28512.1| polyribonucleotide nucleotidyltransferase [Methylotenera sp. 301]
Length = 709
Score = 165 bits (417), Expect = 6e-39, Method: Composition-based stats.
Identities = 51/243 (20%), Positives = 95/243 (39%), Gaps = 18/243 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +R IS+ V GS L G+T L ATL +E+V ++
Sbjct: 316 RIDGRDTRTVRPISIRTGVLPRTHGSALFTRGETQALVVATLGTGRDEQVIDALQGEFKD 375
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y M P +TG + R+ G + R+L + + A + + +
Sbjct: 376 RFMLHYNMPPYATGETGRVGTPKRREIGHGRL----AKRSLIAALPDQADFDYTMRVVSE 431
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ G +AL D M+ + + +G+ A+ +
Sbjct: 432 ITESNGSSSMASVCGGCLALMDAGVPMKSLVAGIAMGLIKEGNRVAVLTD---------I 482
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T+ G I +Q + + L AK+ A ++ + K
Sbjct: 483 LGDEDHLGDMDFKVAGTEDG-ITALQMDIKITGITSQIMQVALAQAKEGRAHILGIMKAA 541
Query: 238 ISN 240
+S+
Sbjct: 542 MSS 544
Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats.
Identities = 37/232 (15%), Positives = 83/232 (35%), Gaps = 27/232 (11%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT----KHGWITAEYGMLPR 68
++L +S+ A+ + +V +GDT +L T + +V + T G +P
Sbjct: 16 LTLETGEISRQADAAVMVSYGDTVVLVAVTSKSEVKAGQDFFPLTVDYMEKTYAAGKIPG 75
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
R GR + R+I R LR + + Q++ +
Sbjct: 76 GFFKR------EGRPSEKETLTSRLIDRPLRPLFPEAFYNEVQVVATVLSSDPEIDADIP 129
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
AI GA A+ G + A G + +++ + ++D
Sbjct: 130 AIIGASAAM-------------SLSGIPFFGPLGAARVGYINDEYVLNPTKAQLEETELD 176
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
T++ ++ V+ A+ S++ + +++ +IK+ ++ +
Sbjct: 177 LVVAATET-AVMMVESEAKE--LSEEVMLGAVVFGHEQMQAVIKMIAELAAE 225
>gi|291279901|ref|YP_003496736.1| polyribonucleotide nucleotidyltransferase [Deferribacter
desulfuricans SSM1]
gi|290754603|dbj|BAI80980.1| polyribonucleotide nucleotidyltransferase [Deferribacter
desulfuricans SSM1]
Length = 700
Score = 165 bits (417), Expect = 6e-39, Method: Composition-based stats.
Identities = 48/239 (20%), Positives = 92/239 (38%), Gaps = 9/239 (3%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R+ GR ++R I + + A GS L G+T L TATL K + + G
Sbjct: 321 RVDGRTYTEIRPIDIEVDLLPCAHGSALFTRGETQALVTATLGTKFDSQLLDDLEGETYK 380
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
+ + V G R + RAL S++ I + +++++
Sbjct: 381 RFMLHYNFPPFSVGEIGFLRAPGRREIGHGFLAERALASMLPGEDEFPYTIRVVSEILES 440
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
+G + A + G +AL D ++D + + +G + + D+ E
Sbjct: 441 NGSSSMATVCGGSLALMDAGVPIKDVVAGIAMGLIYEGDDNYV--------ILSDIMGIE 492
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
D D+D T++G I +Q + ++ L AK+ +++ K V++
Sbjct: 493 DHLGDMDFKVTGTETG-ITALQMDIKIKGLKREILEKALAQAKEGRLFILQKMKAVLAK 550
Score = 102 bits (253), Expect = 5e-20, Method: Composition-based stats.
Identities = 41/228 (17%), Positives = 76/228 (33%), Gaps = 27/228 (11%)
Query: 13 EISLTRRV-SKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----HGWITAEYGMLP 67
I +K A GS +K G + +L TA ++ + + G +P
Sbjct: 18 PIIFETGWKAKQANGSIWIKQGGSVVLVTAVASKEASENLDFFPLTVNYIEKFYAVGKIP 77
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R G+ + I R+I R +R + QII T
Sbjct: 78 GGFIKR------EGKPSDKETLISRLIDRPIRPLFPEGFRNETQIIATVVSSDQVNSTDI 131
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
A+ A AL +G + A+ G + G +++ +++
Sbjct: 132 LALNAASAALM-------------ISDIPFEGPIGAVRVGKINGEYVINPSAAIFDDLEM 178
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
+ T+ IV V+ + S++ L + I L+++QK
Sbjct: 179 NIVVAGTED-SIVMVEAGMKN--CSEEDVVNALEFGHEAIKKLVEVQK 223
>gi|169335158|ref|ZP_02862351.1| hypothetical protein ANASTE_01565 [Anaerofustis stercorihominis DSM
17244]
gi|169257896|gb|EDS71862.1| hypothetical protein ANASTE_01565 [Anaerofustis stercorihominis DSM
17244]
Length = 241
Score = 165 bits (417), Expect = 6e-39, Method: Composition-based stats.
Identities = 104/239 (43%), Positives = 151/239 (63%), Gaps = 2/239 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+R R+ ++ RE+ +TR + Y +G L++ G+T ++ +A +E +VP ++R GWIT
Sbjct: 2 VRSDNRKFDEKREVKITRNYTMYPDGCVLIESGNTKVICSAFIENRVPPFLRGEGTGWIT 61
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
EY MLP ST R +R+ + GRS EIQR+IGR+LRSVVDLS LG + I+IDCDVIQ
Sbjct: 62 CEYSMLPSSTQTRKQRDINRLKLDGRSSEIQRLIGRSLRSVVDLSILGEKTIMIDCDVIQ 121
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTR A+ITGA+VAL+D L M + L +AAIS G++ P++DL Y
Sbjct: 122 ADGGTRVASITGAFVALYDALSKMVEK--GEIERLPLTSFLAAISVGIVENEPLLDLCYI 179
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
EDS D N VM + G +E+ + E+ ++ +L LAK I +LI++QK+V+
Sbjct: 180 EDSNAIADMNVVMNEYGEFIELGMTGEKRPIKEEELNKLLILAKKGIKELIEIQKEVLG 238
>gi|238797068|ref|ZP_04640571.1| Ribonuclease PH [Yersinia mollaretii ATCC 43969]
gi|238719113|gb|EEQ10926.1| Ribonuclease PH [Yersinia mollaretii ATCC 43969]
Length = 238
Score = 165 bits (417), Expect = 6e-39, Method: Composition-based stats.
Identities = 119/240 (49%), Positives = 161/240 (67%), Gaps = 2/240 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR + R Q+R ++LTR +K+AEGS LV+FGDT +L TAT+EE VP +++ GWIT
Sbjct: 1 MRPADRAAQQVRPLTLTRNYTKHAEGSVLVEFGDTKVLCTATVEEGVPRFLKGQGQGWIT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPRST +R REA G+QGGR+ EIQR+I R+LR+ VDL LG I +DCDV+Q
Sbjct: 61 AEYGMLPRSTHSRNAREAAKGKQGGRTLEIQRLIARSLRAAVDLKKLGEFTITLDCDVLQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+I+GA VAL D L + + +KG VAA+S G++ G + DL+Y
Sbjct: 121 ADGGTRTASISGACVALADALNKLVAS--GKLKANPMKGLVAAVSVGIVKGEALCDLEYV 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
EDS + D N VM + G ++EVQG+AE FS + A+L LA+ I + + QK ++
Sbjct: 179 EDSAAETDMNVVMMEDGRMIEVQGTAEGEPFSHEELLALLALARGGIETIFQAQKAALAE 238
>gi|260219850|emb|CBA26795.1| Ribonuclease PH [Curvibacter putative symbiont of Hydra
magnipapillata]
Length = 242
Score = 165 bits (417), Expect = 6e-39, Method: Composition-based stats.
Identities = 120/240 (50%), Positives = 163/240 (67%), Gaps = 2/240 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+R R + +R + +TR + +AEGS L++FG+T +L TA++EEKVP R + GW+T
Sbjct: 5 VRQGARAADALRPVRITRHYTMHAEGSVLIEFGNTKVLCTASVEEKVPPHKRGSGEGWVT 64
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPR+T +R REA G+Q GR+QEIQR+IGR+LR+V DL LG R I +DCDVIQ
Sbjct: 65 AEYGMLPRATHSRSDREAARGKQTGRTQEIQRLIGRSLRAVFDLKKLGERTIQLDCDVIQ 124
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTAAITGA+VA D + + + VAAIS G++ G P++DL+Y
Sbjct: 125 ADGGTRTAAITGAFVAAQDAVNGLLAA--GKITETPITAAVAAISVGIVEGTPLLDLEYT 182
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
EDS D D N VMT +GH VEVQG+AE TF++ +L LA+ + +L+ LQ+ V+S
Sbjct: 183 EDSACDTDMNVVMTGAGHFVEVQGTAEGVTFTRAEMDQLLTLAEKGVGELMLLQQQVLSK 242
>gi|298490673|ref|YP_003720850.1| ribonuclease PH ['Nostoc azollae' 0708]
gi|298232591|gb|ADI63727.1| ribonuclease PH ['Nostoc azollae' 0708]
Length = 246
Score = 165 bits (417), Expect = 6e-39, Method: Composition-based stats.
Identities = 99/239 (41%), Positives = 145/239 (60%), Gaps = 4/239 (1%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R GR ++R +S +++A GS L K GDT +L T ++ + VP ++ T GW+TA
Sbjct: 5 RPDGRNSYELRPLSFYSNFTRFASGSVLAKCGDTQVLCTVSVSDSVPKFLNGTGKGWLTA 64
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
EY MLP +T R +E + GR+QEIQR+IGR+LR+ +D LG R +IID DV+QA
Sbjct: 65 EYRMLPSATQKR--QERELLKLSGRTQEIQRLIGRSLRAALDFEVLGERTLIIDADVLQA 122
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
D GTRT AITG++VAL + M + + VAA+S G+L G +DL+Y E
Sbjct: 123 DAGTRTTAITGSFVALAHAISQMLQQGVLERSPLCRQ--VAAVSVGLLAGEAFLDLNYIE 180
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
D VD N VM + I+EVQG+AE +F++ +L++A+ I +L+ Q+D I+N
Sbjct: 181 DVAATVDFNVVMNQNLEIIEVQGTAEEGSFNRQQLNKLLDVAEKGIQELLIAQRDAITN 239
>gi|188532222|ref|YP_001906019.1| ribonuclease PH [Erwinia tasmaniensis Et1/99]
gi|226736908|sp|B2VF76|RNPH_ERWT9 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|188027264|emb|CAO95107.1| Ribonuclease PH (tRNA nucleotidyltransferase) [Erwinia tasmaniensis
Et1/99]
Length = 238
Score = 165 bits (417), Expect = 6e-39, Method: Composition-based stats.
Identities = 121/240 (50%), Positives = 164/240 (68%), Gaps = 2/240 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR SGR Q+R ++LTR +K+AEGS LV+FGDT +L TAT+EE VP +++ GW+T
Sbjct: 1 MRPSGRSAQQVRPVTLTRHYTKHAEGSVLVEFGDTKVLCTATIEEGVPRFLKGKGQGWVT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPR+T +R REA G+QGGR+ EIQR+I R+LR+ +DL LG I +DCDV+Q
Sbjct: 61 AEYGMLPRATHSRNAREAAKGKQGGRTLEIQRLIARSLRAAIDLKVLGEFTITLDCDVLQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+ITGA VAL D L H+ + +KG VAAIS G++ G + DL+Y
Sbjct: 121 ADGGTRTASITGACVALADALNHLVST--GKLKANPMKGMVAAISVGIVNGEALCDLEYV 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
ED+ + D N VMT+ G ++EVQG+AE FS + +L LA+ I L+ QK +++
Sbjct: 179 EDAAAETDMNVVMTEDGRMIEVQGTAEGEPFSHEELLKLLELARGGIDTLVAAQKAALTD 238
>gi|313668116|ref|YP_004048400.1| ribonuclease PH [Neisseria lactamica ST-640]
gi|313005578|emb|CBN87014.1| ribonuclease PH [Neisseria lactamica 020-06]
Length = 242
Score = 165 bits (416), Expect = 6e-39, Method: Composition-based stats.
Identities = 116/239 (48%), Positives = 168/239 (70%), Gaps = 3/239 (1%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+R S R + +R+I +T R + +GSCL++ G+T ++ TA+++E VP ++R GW+T
Sbjct: 5 IRTS-RAADSLRDIKITPRFLPHTDGSCLIECGNTKVICTASVDENVPPFLRGKNQGWVT 63
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLP ST +R++REA G+Q GR+QEIQR+IGR+LR+VVD+ LG RQI+IDCDVIQ
Sbjct: 64 AEYGMLPASTASRMRREASEGKQSGRTQEIQRLIGRSLRAVVDMEKLGERQILIDCDVIQ 123
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+ITGA+VAL + + ++ VAA+S G++ G P++DLDY
Sbjct: 124 ADGGTRTASITGAFVALQIAVGKLVSD--GILSENPIREAVAAVSAGVVNGVPLLDLDYP 181
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
EDS D D N VMT SG I+E+QG+AE A FS + ++ LA+ I +L++ Q++ +S
Sbjct: 182 EDSGCDSDVNIVMTASGKIIEIQGTAEGAPFSLEELGKLIGLAEKGIGELLRYQQNALS 240
>gi|258616327|ref|ZP_05714097.1| ribonuclease PH/Ham1 protein [Enterococcus faecium DO]
Length = 253
Score = 165 bits (416), Expect = 6e-39, Method: Composition-based stats.
Identities = 121/239 (50%), Positives = 161/239 (67%), Gaps = 3/239 (1%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR GR+ ++R++ L V KY EGS +++FGDT ++ +AT+E+ VP ++R T GW+T
Sbjct: 1 MRHDGRKAQELRKLELQTNVFKYPEGSVVIRFGDTTVICSATIEDSVPPFLRETGTGWVT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEY MLPR+T R +RE+ G+ GR+ EIQR+IGR+LR+VVDL LG R II+DCDVIQ
Sbjct: 61 AEYSMLPRATSTRNRRESSKGKLSGRTMEIQRLIGRSLRAVVDLEKLGERSIIVDCDVIQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIV-DLDY 179
ADGGTRTA+ITGA+VAL ++ + K +K H+AA+S G+L V DLDY
Sbjct: 121 ADGGTRTASITGAFVALKLAIEKLLRE--KELSEDPIKEHLAAVSVGILPDGTCVTDLDY 178
Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
EDS VD N VMT+SG VE+QG+ E ATF + ML K+ I DLIK QK +
Sbjct: 179 QEDSAALVDMNLVMTESGKFVEIQGTGEEATFDGEQLNEMLFFGKNAIEDLIKEQKHAL 237
>gi|315655635|ref|ZP_07908533.1| tRNA nucleotidyltransferase [Mobiluncus curtisii ATCC 51333]
gi|315489699|gb|EFU79326.1| tRNA nucleotidyltransferase [Mobiluncus curtisii ATCC 51333]
Length = 257
Score = 165 bits (416), Expect = 6e-39, Method: Composition-based stats.
Identities = 113/237 (47%), Positives = 151/237 (63%), Gaps = 2/237 (0%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R GR+ +Q+RE++L EG LV G+T +L +A+L E VP W +++ GW+TA
Sbjct: 7 RADGRRMDQLREVTLHMDWVSAPEGCVLVSCGNTRVLCSASLTEGVPRWRKDSGLGWVTA 66
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
EY MLPR+T R RE+V G+ GR+ EI R+IGRALR+ VD +ALG I IDCDV+QA
Sbjct: 67 EYAMLPRATDTRNTRESVKGKISGRTSEISRLIGRALRAAVDYAALGENTIAIDCDVLQA 126
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
DGGTRTA+ITGAW+AL + D F + V AIS G++ P +DL Y E
Sbjct: 127 DGGTRTASITGAWIALQRAIAVGRDS--GFIPGNPTRDSVCAISVGIIDSIPRLDLPYEE 184
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
DS + D N VMT SG +VEVQG+AE A FS+ A+L+LA+ DL +LQ+ +
Sbjct: 185 DSRAETDMNVVMTGSGSLVEVQGTAEGAPFSRAELDALLDLAQAGCRDLTRLQRAAV 241
>gi|294787659|ref|ZP_06752903.1| tRNA nucleotidyltransferase [Simonsiella muelleri ATCC 29453]
gi|294483952|gb|EFG31635.1| tRNA nucleotidyltransferase [Simonsiella muelleri ATCC 29453]
Length = 245
Score = 165 bits (416), Expect = 6e-39, Method: Composition-based stats.
Identities = 112/234 (47%), Positives = 159/234 (67%), Gaps = 2/234 (0%)
Query: 6 RQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGM 65
R N++REI++ +A+GS L+ G+T ++ TAT+++ VP ++R GW+TAEYGM
Sbjct: 12 RAANELREITIQPNFLPHADGSVLISCGNTKVICTATIDQNVPSFLRGKGEGWVTAEYGM 71
Query: 66 LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125
LP ST +R+KREA SG+Q GR+QEIQR+IGR+LR+ VD+ LG RQI+IDCDVIQADGGT
Sbjct: 72 LPASTQSRMKREAASGKQSGRTQEIQRLIGRSLRACVDMKKLGERQILIDCDVIQADGGT 131
Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185
RT +ITGA+VAL +Q M + + + VAA+S G++ G P++DLDY EDS
Sbjct: 132 RTTSITGAFVALKMAIQKMLNDGRLPETPLIGS--VAAVSVGVVGGVPLLDLDYPEDSNC 189
Query: 186 DVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
D D N VM ++ I+E+QG+AE A FS ++ L + I L +LQ+ +
Sbjct: 190 DSDVNLVMLNADKIIEIQGTAEGAAFSLAELQTLIALGQKGITQLAQLQQKALR 243
>gi|254524022|ref|ZP_05136077.1| ribonuclease PH [Stenotrophomonas sp. SKA14]
gi|219721613|gb|EED40138.1| ribonuclease PH [Stenotrophomonas sp. SKA14]
Length = 241
Score = 165 bits (416), Expect = 6e-39, Method: Composition-based stats.
Identities = 116/228 (50%), Positives = 155/228 (67%), Gaps = 2/228 (0%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R SGRQ +Q+R + + R +++AEGS LV FG+T +L TA++E +VP ++R GW+TA
Sbjct: 5 RPSGRQPDQLRPVVIQRGFTRHAEGSVLVCFGETRVLCTASVENRVPGFLRGKGEGWVTA 64
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
EYGMLPR+T R REA G+QGGR+ EIQR+IGR+LR+ VD +ALG R I +DCDV+QA
Sbjct: 65 EYGMLPRATHTRSDREAARGKQGGRTLEIQRLIGRSLRACVDRNALGERTITLDCDVLQA 124
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
DGGTRTAAITGA+VAL D + + G VAA+S G+ G P++DLDY E
Sbjct: 125 DGGTRTAAITGAYVALVDAVN--VLMKRGDIKRNPILGAVAAVSVGVYRGTPVLDLDYAE 182
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIAD 229
DS D D N VM D G +E+QG+AE F +D A+L LA+ + +
Sbjct: 183 DSDCDTDMNVVMNDGGGFIELQGTAEGHAFRRDELDALLGLAEKGVRE 230
>gi|332970986|gb|EGK09959.1| tRNA nucleotidyltransferase [Kingella kingae ATCC 23330]
Length = 242
Score = 165 bits (416), Expect = 6e-39, Method: Composition-based stats.
Identities = 114/233 (48%), Positives = 160/233 (68%), Gaps = 2/233 (0%)
Query: 6 RQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGM 65
R N++REI +T +A+GS L++ G+T ++ TAT++E VP ++R GW+TAEYGM
Sbjct: 8 RAANELREIRITPNFLPHADGSVLIECGNTKVICTATIDENVPPFLRGKNQGWVTAEYGM 67
Query: 66 LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125
LP ST +R+KREA +G+Q GR+QEIQR+IGR+LR+ VD+ LG RQI+IDCDVIQADGGT
Sbjct: 68 LPASTQSRMKREAAAGKQSGRTQEIQRLIGRSLRACVDMQKLGERQILIDCDVIQADGGT 127
Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185
RTA+ITGA+VAL +Q M + + VAAIS G++ G P++DLDY EDS
Sbjct: 128 RTASITGAFVALKIAVQKMLNDGRLTDTPLMGS--VAAISVGVVGGVPLLDLDYPEDSGC 185
Query: 186 DVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
D D N VM ++ I+E+QG+AE A F D ++ L + I +L + Q+ +
Sbjct: 186 DSDVNLVMLNAEKIIEIQGTAEGAAFGLDELQQLIALGQKGIRELTEWQEKAV 238
>gi|296100489|ref|YP_003610635.1| ribonuclease PH [Enterobacter cloacae subsp. cloacae ATCC 13047]
gi|295054948|gb|ADF59686.1| ribonuclease PH [Enterobacter cloacae subsp. cloacae ATCC 13047]
Length = 238
Score = 165 bits (416), Expect = 7e-39, Method: Composition-based stats.
Identities = 123/240 (51%), Positives = 162/240 (67%), Gaps = 2/240 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR +GR NQ+R ++LTR +K+AEGS LV+FGDT +L TA++EE VP +++ GWIT
Sbjct: 1 MRPAGRSANQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWIT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPR+T R REA G+QGGR+ EIQR+I RALR+ VDL LG I +DCDVIQ
Sbjct: 61 AEYGMLPRATHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKTLGEFTITLDCDVIQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+ITGA VAL D L + + +KG VAA+S G++ G + DL+Y
Sbjct: 121 ADGGTRTASITGACVALADALNKLVAA--GKLKTNPMKGMVAAVSVGIVNGEALCDLEYV 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
EDS + D N VMT+ G I+EVQG+AE F+ + +L LA+ I ++ QK + N
Sbjct: 179 EDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLTLLALARGGIESIVTTQKAALEN 238
>gi|254251858|ref|ZP_04945176.1| Polyribonucleotide nucleotidyltransferase [Burkholderia dolosa
AUO158]
gi|124894467|gb|EAY68347.1| Polyribonucleotide nucleotidyltransferase [Burkholderia dolosa
AUO158]
Length = 722
Score = 165 bits (416), Expect = 7e-39, Method: Composition-based stats.
Identities = 47/242 (19%), Positives = 94/242 (38%), Gaps = 18/242 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHG 57
R+ GR +R I + V GS L G+T L AT +E++ +
Sbjct: 330 RIDGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQALVVATLGTKGDEQIIDALEGEYRD 389
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y M P +TG + + R+ G + RAL + + + I + +
Sbjct: 390 RFMLHYNMPPFATGETGRVGSPKRREIGHGRL----AKRALVACLPSAEEFGYSIRVVSE 445
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ G +AL D M+ + +L+G+ A+ +
Sbjct: 446 ITESNGSSSMASVCGGCLALMDAGVPMKAHVAGIAMGLILEGNKFAVLTD---------I 496
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T+ G + +Q + +++ L AK+ +++ +
Sbjct: 497 LGDEDHLGDMDFKVAGTEQG-VTALQMDIKIQGITKEIMQVALAQAKEGRMHILRKMTEA 555
Query: 238 IS 239
+S
Sbjct: 556 VS 557
Score = 96.1 bits (237), Expect = 4e-18, Method: Composition-based stats.
Identities = 34/233 (14%), Positives = 72/233 (30%), Gaps = 27/233 (11%)
Query: 13 EISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT----KHGWITAEYGMLP 67
++ L +++ A G+ +V DT +L T + + T G +P
Sbjct: 25 KVRLETGEIARQASGAVIVDVEDTVVLATVVGAKSAKPGQDFFPLTVDYIEKTYSAGKIP 84
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R GR R+I R LR + Q++I + +
Sbjct: 85 GGFFRR------EGRPSEHETLTSRLIDRPLRPLFPEGFYNEVQVVIHVLSVNPEIPADI 138
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
A+ GA A G V A + +++ + +
Sbjct: 139 PALIGASAA-------------LAVSGLPFNGPVGAARVAYVNDQYVLNPTREQLKASRL 185
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
D T+ ++ V+ +E +D + +++ I +++ +
Sbjct: 186 DLVVAGTER-AVLMVE--SEADQLPEDVMLGAVVFGHEQMQTAIDAIHELVRD 235
>gi|197123834|ref|YP_002135785.1| ribonuclease PH [Anaeromyxobacter sp. K]
gi|220918599|ref|YP_002493903.1| ribonuclease PH [Anaeromyxobacter dehalogenans 2CP-1]
gi|226736882|sp|B4UBI2|RNPH_ANASK RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|254808575|sp|B8J5H5|RNPH_ANAD2 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|196173683|gb|ACG74656.1| ribonuclease PH [Anaeromyxobacter sp. K]
gi|219956453|gb|ACL66837.1| ribonuclease PH [Anaeromyxobacter dehalogenans 2CP-1]
Length = 239
Score = 165 bits (416), Expect = 7e-39, Method: Composition-based stats.
Identities = 125/239 (52%), Positives = 165/239 (69%), Gaps = 2/239 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR +GR E +R I L RVSK+AEGSCLV+FGDTH+L TA+++EKVP + T GW+T
Sbjct: 1 MRKNGRGELDLRPILLEPRVSKHAEGSCLVRFGDTHVLCTASVDEKVPPHVYGTGAGWVT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPRST R++REA G+Q GR+ EIQR++GRALR+ VDL A+G R + +DCDVIQ
Sbjct: 61 AEYGMLPRSTHERMQREAARGKQTGRTLEIQRLVGRALRAAVDLRAIGPRTVTLDCDVIQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTAAITGA+VAL ++ ++ +K VAA+S G++ G +DLDY
Sbjct: 121 ADGGTRTAAITGAYVALVQAVRGIQKRRQLA--QDPVKRSVAAVSVGIVAGQVHLDLDYD 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
EDST +VD N V T G +VEVQG+AE F + ML+ A ++ L +LQ+ +
Sbjct: 179 EDSTAEVDMNVVATGDGALVEVQGTAEGKPFPRAELDRMLDAALAGLSRLKELQEAALR 237
>gi|296114408|ref|ZP_06833062.1| polynucleotide phosphorylase/polyadenylase [Gluconacetobacter
hansenii ATCC 23769]
gi|295979169|gb|EFG85893.1| polynucleotide phosphorylase/polyadenylase [Gluconacetobacter
hansenii ATCC 23769]
Length = 710
Score = 165 bits (416), Expect = 7e-39, Method: Composition-based stats.
Identities = 42/243 (17%), Positives = 87/243 (35%), Gaps = 18/243 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +R I + A GS L G+T L ATL +E+V +
Sbjct: 312 RIDGRDLKTIRPIVSEVGILPRAHGSALFTRGETQALVIATLGTGQDEQVIDALEGEYRT 371
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + + R+ G + RA+ ++ + + +
Sbjct: 372 NFMLHYNFPPFSVGECGRMGSPGRREIGHGKL----AWRAIHPLLPGKDTFPYTMRVVSE 427
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A + G +AL D ++ + + + A+ +
Sbjct: 428 ITESNGSSSMATVCGTSLALMDAGVPLKRPVAGIAMGLIKEEEEFAVLSD---------I 478
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T++G I +Q + + + + L+ A+ ++
Sbjct: 479 LGDEDHLGDMDFKVAGTENG-ITALQMDIKITSITPEIMEIALDQARGGRMHILGEMSKA 537
Query: 238 ISN 240
++
Sbjct: 538 LTE 540
Score = 117 bits (292), Expect = 2e-24, Method: Composition-based stats.
Identities = 39/235 (16%), Positives = 77/235 (32%), Gaps = 28/235 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----HGWITAEYGML 66
R + L +++ A+G+ +V +GDT +L TA + V + G +
Sbjct: 14 RPLILETGKIARQADGAVVVTYGDTVVLCTAVGAKSVKPGQDFFPLTVNYQEKAYAAGKI 73
Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
P R GR R+I R +R + + Q++ +
Sbjct: 74 PGGFFKR------EGRPSEAEVLNSRLIDRPIRPLFPDNFRNEVQVVATVLSHDMENDPA 127
Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
A+ G A G V A G + G +++ +
Sbjct: 128 IVALIGCSAA-------------LTLSGVPFFGPVGACRVGYIDGKYVLNPTIAQTKESA 174
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
+D T+ G ++ V+ +E A S+ + + D+I + ++
Sbjct: 175 LDLVVAGTEEG-VLMVE--SEAAELSEKVMLGAVTFGHEAFQDVIDAIIE-LAEH 225
>gi|148927584|ref|ZP_01811056.1| ribonuclease PH [candidate division TM7 genomosp. GTL1]
gi|147887071|gb|EDK72567.1| ribonuclease PH [candidate division TM7 genomosp. GTL1]
Length = 244
Score = 165 bits (416), Expect = 7e-39, Method: Composition-based stats.
Identities = 126/237 (53%), Positives = 172/237 (72%), Gaps = 2/237 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MRL+ R N++REI++TR+ +K+AEGS LV FGDT ++ TA++ VP ++++ GW+T
Sbjct: 6 MRLANRANNKLREINITRKFTKHAEGSVLVTFGDTKVICTASVTNGVPPFLKDKGQGWVT 65
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPRST R++REA G+Q GR+QEIQR+I R+LR+ VDL+A+G I IDCDVIQ
Sbjct: 66 AEYGMLPRSTHERMQREAAKGKQVGRTQEIQRLIARSLRAAVDLTAMGENTITIDCDVIQ 125
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTAAITG VALHD LQ++ + K + + VA++S G++ G P++DLDY
Sbjct: 126 ADGGTRTAAITGGCVALHDALQYLTEK--KQLATNPFQQFVASVSVGIINGEPMLDLDYQ 183
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
EDS D D N VMT+ G +EVQG+AE+ F Q A+L+LAK I +L K+QK +
Sbjct: 184 EDSNADTDMNVVMTEQGGFIEVQGTAEKTVFQQSELDALLHLAKQGITELTKMQKQI 240
>gi|326773720|ref|ZP_08233003.1| tRNA nucleotidyltransferase [Actinomyces viscosus C505]
gi|326636950|gb|EGE37853.1| tRNA nucleotidyltransferase [Actinomyces viscosus C505]
Length = 268
Score = 165 bits (416), Expect = 8e-39, Method: Composition-based stats.
Identities = 106/240 (44%), Positives = 146/240 (60%), Gaps = 2/240 (0%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R GR +++R +++TR +AEGS LV FG T +L A+ E VP W + + GW+TA
Sbjct: 8 RKDGRAVDELRPVTMTRHWLDHAEGSVLVTFGRTRVLCAASFTEGVPRWRKGSGEGWVTA 67
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
EY MLPR+ R RE+V G+ GGR+ EI R+IGR+LR ++D++ALG I +DCDV+QA
Sbjct: 68 EYAMLPRAGSERSGRESVRGKVGGRTHEISRLIGRSLRGIIDVAALGENTIALDCDVLQA 127
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLS--QVLKGHVAAISCGMLCGYPIVDLDY 179
DGGTRTAAITGA+VAL D + VL ++AIS G++ G P +DL Y
Sbjct: 128 DGGTRTAAITGAYVALTDAVAWGTQRGLIKARPGKPVLSDSLSAISVGIIDGVPCLDLPY 187
Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
ED D N V T G +EVQG+AE A F + +L+LA + L LQ+ ++
Sbjct: 188 EEDVRAQTDMNVVQTGDGRFIEVQGTAEHAPFDRSELGELLDLAATGNSRLAALQRQALA 247
>gi|330991187|ref|ZP_08315140.1| Polyribonucleotide nucleotidyltransferase [Gluconacetobacter sp.
SXCC-1]
gi|329761773|gb|EGG78264.1| Polyribonucleotide nucleotidyltransferase [Gluconacetobacter sp.
SXCC-1]
Length = 761
Score = 164 bits (415), Expect = 8e-39, Method: Composition-based stats.
Identities = 40/243 (16%), Positives = 85/243 (34%), Gaps = 18/243 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +R I + A GS L G+T L ATL +E++ +
Sbjct: 361 RIDGRDLETIRPIVSEVGILPRAHGSALFTRGETQALVVATLGTGQDEQIVDALEGEYRN 420
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + + R+ G + RA+ ++ + + +
Sbjct: 421 NFMLHYNFPPFSVGECGRMGSPGRREIGHGKL----AWRAIHPLLPGKDTFPYTMRVVSE 476
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A + G +AL D ++ + + + A+ +
Sbjct: 477 ITESNGSSSMATVCGTSLALMDAGVPLKRPVAGIAMGLIKEEDDFAVLSD---------I 527
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T+ G + +Q + + + + L A+ ++
Sbjct: 528 LGDEDHLGDMDFKVAGTEQG-VTALQMDIKITSITPEIMKIALGQARQGRLHILGEMAKA 586
Query: 238 ISN 240
++
Sbjct: 587 LTE 589
Score = 117 bits (292), Expect = 2e-24, Method: Composition-based stats.
Identities = 39/228 (17%), Positives = 73/228 (32%), Gaps = 27/228 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----HGWITAEYGML 66
R + L +++ A+G+ +V +GDT +L TA + V + G +
Sbjct: 63 RPLVLETGKIARQADGAVVVTYGDTVVLCTAVGAKSVKPGQDFFPLTVNYQEKAYAAGKI 122
Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
P R GR R+I R +R + + Q++ +
Sbjct: 123 PGGFFKR------EGRPSEAEVLNSRLIDRPIRPLFPENFRNEVQVVATVLSHDMENDPA 176
Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
A+ G A G V A G G +++ + +
Sbjct: 177 VVALIGCSAA-------------LTLSGIPFFGPVGAARVGYSNGKYVLNPTISQLKESE 223
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
+D T G ++ V+ +E S+D + + +I L
Sbjct: 224 LDLVVAGTSEG-VLMVE--SEAVELSEDVMLGAVTFGHEAFQPVIDLI 268
>gi|145222946|ref|YP_001133624.1| ribonuclease PH [Mycobacterium gilvum PYR-GCK]
gi|315443409|ref|YP_004076288.1| RNAse PH [Mycobacterium sp. Spyr1]
gi|189043767|sp|A4T8F7|RNPH_MYCGI RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|145215432|gb|ABP44836.1| RNAse PH [Mycobacterium gilvum PYR-GCK]
gi|315261712|gb|ADT98453.1| RNAse PH [Mycobacterium sp. Spyr1]
Length = 260
Score = 164 bits (415), Expect = 8e-39, Method: Composition-based stats.
Identities = 109/238 (45%), Positives = 156/238 (65%), Gaps = 1/238 (0%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R GR ++++R +++TR + + GS LV+FG+T ++ TA++ E VP W + + GW+TA
Sbjct: 4 REDGRLDDELRPVTITRGFTTHPAGSVLVEFGETRVMCTASVTEGVPRWRKGSGQGWLTA 63
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
EY MLP +T +R RE+V GR GGR+QEI R++GR+LR+ +DL+ALG I IDCDV+QA
Sbjct: 64 EYAMLPAATHDRSDRESVKGRVGGRTQEISRLVGRSLRACIDLAALGENTIAIDCDVLQA 123
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
DGGTRTAAITGA+VAL D + K + L +AA+S G++ G VDL Y E
Sbjct: 124 DGGTRTAAITGAFVALSDA-VTYLGAAGKLSDPRPLSCAIAAVSVGVVDGRVRVDLPYTE 182
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
DS +VD N V TD+G +VE+QG+ E ATF + ML+ A L ++Q+ +
Sbjct: 183 DSRAEVDMNVVATDTGTLVEIQGTGEGATFPRSTLDKMLDAAMAACDQLFEIQRAALE 240
>gi|315656450|ref|ZP_07909339.1| tRNA nucleotidyltransferase [Mobiluncus curtisii subsp. holmesii
ATCC 35242]
gi|315493009|gb|EFU82611.1| tRNA nucleotidyltransferase [Mobiluncus curtisii subsp. holmesii
ATCC 35242]
Length = 259
Score = 164 bits (415), Expect = 8e-39, Method: Composition-based stats.
Identities = 113/237 (47%), Positives = 151/237 (63%), Gaps = 2/237 (0%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R GR+ +Q+RE++L EG LV G+T +L +A+L E VP W +++ GW+TA
Sbjct: 9 RADGRRMDQLREVTLHMDWVSAPEGCVLVSCGNTRVLCSASLTEGVPRWRKDSGLGWVTA 68
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
EY MLPR+T R RE+V G+ GR+ EI R+IGRALR+ VD +ALG I IDCDV+QA
Sbjct: 69 EYAMLPRATDTRNTRESVKGKISGRTSEISRLIGRALRAAVDYAALGENTIAIDCDVLQA 128
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
DGGTRTA+ITGAW+AL + D F + V AIS G++ P +DL Y E
Sbjct: 129 DGGTRTASITGAWIALQCAIAVGRDS--GFIPGNPTRDSVCAISVGIIDSIPRLDLPYEE 186
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
DS + D N VMT SG +VEVQG+AE A FS+ A+L+LA+ DL +LQ+ +
Sbjct: 187 DSRAETDMNVVMTGSGSLVEVQGTAEGAPFSRAELDALLDLAQAGCRDLTRLQRAAV 243
>gi|146328830|ref|YP_001209573.1| ribonuclease PH [Dichelobacter nodosus VCS1703A]
gi|166228278|sp|A5EV74|RNPH_DICNV RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|146232300|gb|ABQ13278.1| ribonuclease PH [Dichelobacter nodosus VCS1703A]
Length = 238
Score = 164 bits (415), Expect = 8e-39, Method: Composition-based stats.
Identities = 116/239 (48%), Positives = 165/239 (69%), Gaps = 2/239 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR R +QMRE+ + R V+ +AEGS L+ G T +L TA++EE+VP ++R GW+T
Sbjct: 1 MRPHHRLPDQMRELHIERAVNCHAEGSALITLGRTQVLCTASIEERVPPFLRGQNQGWVT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPR+T R REA G+Q GR+QEIQR+IGR+LR+VVDLSALG R I +DCDV+Q
Sbjct: 61 AEYGMLPRATHERSTREAARGKQQGRTQEIQRLIGRSLRAVVDLSALGERSITLDCDVLQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTAAI+G ++AL D ++ + L+G +AA+S G G ++DL+Y
Sbjct: 121 ADGGTRTAAISGGFIALADAIR--VLMQQGRLKANPLRGQLAAVSVGFYQGEALLDLEYC 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
EDS + D N VM D+G ++E+QG+AE FS+ A+L+LA+ I++++ Q+ V+
Sbjct: 179 EDSAAETDMNIVMNDAGALIEIQGTAEGRAFSRQEMNALLDLAEKGISEIMAEQRRVLG 237
>gi|311743617|ref|ZP_07717423.1| tRNA nucleotidyltransferase [Aeromicrobium marinum DSM 15272]
gi|311312747|gb|EFQ82658.1| tRNA nucleotidyltransferase [Aeromicrobium marinum DSM 15272]
Length = 240
Score = 164 bits (415), Expect = 8e-39, Method: Composition-based stats.
Identities = 115/238 (48%), Positives = 154/238 (64%), Gaps = 2/238 (0%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R GR +Q+R+I +TR +A+GSCL++FG T +L A E VP W + + GW+TA
Sbjct: 4 REDGRAVDQLRDIRITRGWLDHAQGSCLIEFGKTRVLCAAAASEGVPRWRKGSGLGWVTA 63
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
EY MLP++T +R RE+V GR GGR+ EI R++GR+LR+ +D ALG I IDCDV+QA
Sbjct: 64 EYAMLPQATHDRSSRESVKGRIGGRTHEISRLVGRSLRATIDDKALGENTITIDCDVLQA 123
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
DGGTRTAAITGA++AL D + H++ + L VAAIS G++ G P++DL Y E
Sbjct: 124 DGGTRTAAITGAYIALADAVAHLK--GLGATAGEPLVESVAAISVGIVDGVPMLDLPYVE 181
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
D D N VMT SG VEVQG+AE F + A+L LA ADL +LQ + +S
Sbjct: 182 DVRAHTDMNVVMTGSGAFVEVQGTAEGQPFDKAELDALLELAAGGCADLTRLQTEALS 239
>gi|169628575|ref|YP_001702224.1| ribonuclease PH [Mycobacterium abscessus ATCC 19977]
gi|226736919|sp|B1MLZ3|RNPH_MYCA9 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|169240542|emb|CAM61570.1| Probable ribonuclease PH [Mycobacterium abscessus]
Length = 258
Score = 164 bits (415), Expect = 9e-39, Method: Composition-based stats.
Identities = 114/238 (47%), Positives = 158/238 (66%), Gaps = 1/238 (0%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R GRQ++++R +++TR + + GS L++FG T ++ TA+ E VP W + + GW+TA
Sbjct: 4 REDGRQDDELRPVTITRGFTSHPAGSVLIEFGQTRVMCTASATEGVPRWRKGSGLGWLTA 63
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
EY MLP ST R RE+V GR GGR+QEI R+IGR+LR+ +DLSALG I IDCDV+QA
Sbjct: 64 EYAMLPASTHTRSDRESVKGRVGGRTQEISRLIGRSLRACIDLSALGENTIAIDCDVLQA 123
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
DGGTRTAAITGA+VAL D + ++ K + L +AA+S G++ G VDL Y E
Sbjct: 124 DGGTRTAAITGAYVALADAVTYLAAHG-KLADDEPLSCAIAAVSVGVVDGRVRVDLPYEE 182
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
DS +VD N V TD+G +VEVQG+ E ATF++ +L+ A L LQK+ ++
Sbjct: 183 DSRAEVDMNVVATDTGTLVEVQGTGEGATFARSTLDKLLDAAVGAADQLFVLQKEALA 240
>gi|71083097|ref|YP_265816.1| polynucleotide phosphorylase/polyadenylase [Candidatus Pelagibacter
ubique HTCC1062]
gi|123734390|sp|Q4FNM6|PNP_PELUB RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|71062210|gb|AAZ21213.1| polyribonucleotide nucleotidyltransferase [Candidatus Pelagibacter
ubique HTCC1062]
Length = 690
Score = 164 bits (415), Expect = 9e-39, Method: Composition-based stats.
Identities = 44/243 (18%), Positives = 83/243 (34%), Gaps = 19/243 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +R I V GS L G+T + TL +E+ +
Sbjct: 313 RIDGRGLADVRAIECEVGVLPRTHGSALFTRGETQAIVVTTLGTSDDEQRLESLDGQHRE 372
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + R+ G + RA+ S + I +
Sbjct: 373 RFMLHYNFPPFSVGETGRIGTGR-REVGHGKL----AWRAINSSLPPKEEFPYTFRIVSE 427
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ GA +AL D +++ + + +G ++ +
Sbjct: 428 ITESNGSSSMASVCGASLALMDAGVPIKEPVAGIAMGLIKEGDDFSVLSD---------I 478
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T G I +Q + + + L AK+ ++
Sbjct: 479 LGDEDHLGDMDFKVAGTKDG-ITSLQMDIKITGITFEIMEQALKQAKEGRIHILGEMNKA 537
Query: 238 ISN 240
+S
Sbjct: 538 LSE 540
Score = 108 bits (270), Expect = 5e-22, Method: Composition-based stats.
Identities = 38/229 (16%), Positives = 75/229 (32%), Gaps = 19/229 (8%)
Query: 13 EISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG 71
+ISL V++ A+G+ + G+T +L T +KV + E
Sbjct: 15 KISLETGKVARQADGAIIASCGETVILATVVGAKKVNPDMDYFPLSVNYQEKYYAGGKIP 74
Query: 72 NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAIT 131
R Q I R+I R +R + Q++ D AIT
Sbjct: 75 --GGYFKREARPTESEQLISRLIDRPIRPLFPSEFKNEVQLLPTVISYDKDNQPDILAIT 132
Query: 132 GAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANF 191
+ A G V A G++ G I++ E +D
Sbjct: 133 ASSAA-------------LAISGMPFMGPVGASRVGLVDGKYILNPSKAELENSTLDLVV 179
Query: 192 VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
T ++ V+ +E + +++ + + +I++ +++
Sbjct: 180 AGTKD-AVLMVE--SETSGLTEEVMLDAVKFGHEGFVPVIEMIEELAKE 225
>gi|284008817|emb|CBA75581.1| ribonuclease PH [Arsenophonus nasoniae]
Length = 237
Score = 164 bits (415), Expect = 9e-39, Method: Composition-based stats.
Identities = 118/239 (49%), Positives = 161/239 (67%), Gaps = 2/239 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR R+ +Q+R I +TR+ +K+AEGS L++FGDT +L AT++E VP +++ GWIT
Sbjct: 1 MRPENREADQVRPIKITRQYTKHAEGSVLIEFGDTKVLCNATIDEGVPRFLKGQSQGWIT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPR+T +R REA G+Q GR+ EIQR+I R+LR+ VDL LG I +DCDVIQ
Sbjct: 61 AEYGMLPRATNSRNIREAAKGKQTGRTMEIQRLIARSLRAAVDLKQLGEYTITLDCDVIQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTAAI+GA VAL D L M LK VAA+S G++ G PI DL+Y
Sbjct: 121 ADGGTRTAAISGACVALTDALNKMVAE--GKLKQSPLKSMVAAVSVGIVDGKPICDLEYS 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
EDS + D N VM D+G ++E+QG+AE FS + ++L+LAK+ + + QK+ +
Sbjct: 179 EDSVAETDMNVVMMDNGKMIEIQGTAEGEPFSHEELLSLLSLAKNGLQTIFTAQKEALE 237
>gi|95929621|ref|ZP_01312363.1| Polyribonucleotide nucleotidyltransferase [Desulfuromonas
acetoxidans DSM 684]
gi|95134318|gb|EAT15975.1| Polyribonucleotide nucleotidyltransferase [Desulfuromonas
acetoxidans DSM 684]
Length = 699
Score = 164 bits (415), Expect = 9e-39, Method: Composition-based stats.
Identities = 50/243 (20%), Positives = 91/243 (37%), Gaps = 18/243 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
+R+ GR+ N++R IS V A GS L G+T L + TL +E+ I+ +
Sbjct: 312 IRIDGRKMNEIRPISCEVGVLPRAHGSALFTRGETQALVSTTLGTASDEQRMDNIQGMEF 371
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P G R R+ G R+ ++ + I
Sbjct: 372 KKFMLHYNFPPFCVGETSMRLFPGRREIGHGML----AERSATKIMPEFDDFPYTVRIVS 427
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
++++++G + A++ GA ++L D +D + + +G AI
Sbjct: 428 EILESNGSSSMASVCGASMSLMDAGVPAKDAVAGIAMGLIKEGDDIAILSD--------- 478
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T G + +Q + ++D L AK+ ++
Sbjct: 479 ILGDEDHLGDMDFKVTGTKEG-VAALQMDIKIDGVTRDIMQRALAQAKEGRLHILGEMAK 537
Query: 237 VIS 239
IS
Sbjct: 538 AIS 540
Score = 104 bits (258), Expect = 1e-20, Method: Composition-based stats.
Identities = 40/229 (17%), Positives = 77/229 (33%), Gaps = 27/229 (11%)
Query: 13 EISLTRR-VSKYAEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTKHGWITAEYGMLP 67
+++ +++ A+G+ +V +G+T +L T T+ E + + G +P
Sbjct: 14 PLTIETGKMARQADGATIVTYGETKILCTVVSAKTMREGQDFFPLTVNYQEKFYASGKIP 73
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
S R + R I R+I R +R + L QII T
Sbjct: 74 GSFFRRERGA------TERETLICRLIDRPMRPLFPKGYLYETQIIPTVISADCVNDPDT 127
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
+I ++ G +A + G + G I + + D+
Sbjct: 128 LSILA-------------ASASVSVSDIPFGGPIAGVRVGRVDGEFIANPTLEQQEQSDI 174
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ + I+ V+ E S+D + I LI++Q
Sbjct: 175 EIVVAGSKD-AIMMVE--GEADLISEDEMLEAVFFGHQAIQPLIEMQTK 220
>gi|238760457|ref|ZP_04621595.1| Ribonuclease PH [Yersinia aldovae ATCC 35236]
gi|238783915|ref|ZP_04627932.1| Ribonuclease PH [Yersinia bercovieri ATCC 43970]
gi|238701352|gb|EEP93931.1| Ribonuclease PH [Yersinia aldovae ATCC 35236]
gi|238715154|gb|EEQ07149.1| Ribonuclease PH [Yersinia bercovieri ATCC 43970]
Length = 238
Score = 164 bits (415), Expect = 9e-39, Method: Composition-based stats.
Identities = 119/240 (49%), Positives = 161/240 (67%), Gaps = 2/240 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR + R Q+R ++LTR +K+AEGS LV+FGDT +L TAT+EE VP +++ GWIT
Sbjct: 1 MRPADRAAQQVRPLTLTRNYTKHAEGSVLVEFGDTKVLCTATVEEGVPRFLKGQGQGWIT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPRST +R REA G+QGGR+ EIQR+I R+LR+ VDL LG I +DCDV+Q
Sbjct: 61 AEYGMLPRSTHSRNAREAAKGKQGGRTLEIQRLIARSLRAAVDLKKLGEFTITLDCDVLQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+I+GA VAL D L + + +KG VAA+S G++ G + DL+Y
Sbjct: 121 ADGGTRTASISGACVALADALNKLVAS--GKLKANPMKGLVAAVSVGIVKGEALCDLEYV 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
EDS + D N VM + G ++EVQG+AE FS + A+L LA+ I + + QK ++
Sbjct: 179 EDSAAETDMNVVMMEDGRMIEVQGTAEGEPFSHEELLALLALARGGIETIFQAQKAALAQ 238
>gi|163737986|ref|ZP_02145402.1| heat-inducible transcription repressor [Phaeobacter gallaeciensis
BS107]
gi|161388602|gb|EDQ12955.1| heat-inducible transcription repressor [Phaeobacter gallaeciensis
BS107]
Length = 227
Score = 164 bits (415), Expect = 9e-39, Method: Composition-based stats.
Identities = 121/227 (53%), Positives = 160/227 (70%), Gaps = 2/227 (0%)
Query: 11 MREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRST 70
MR +S+ +K+AEGSCL+K GDTH+L TAT+E++VP +I+ + GW+TAEYGMLPR+T
Sbjct: 1 MRAVSIETGFTKHAEGSCLIKMGDTHVLCTATIEDRVPPFIKGSGLGWVTAEYGMLPRAT 60
Query: 71 GNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAI 130
R++REA G+QGGR+ EIQR+IGRALR+ VD ALG RQI IDCDV+QADGGTR A+I
Sbjct: 61 NTRMRREAAMGKQGGRTVEIQRLIGRALRAGVDRVALGERQISIDCDVLQADGGTRCASI 120
Query: 131 TGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDAN 190
TG WVAL + + V VAA+SCG+ G P++DLDY EDS VD N
Sbjct: 121 TGGWVALRLAVNKLMKTGEVKIDPLV--DPVAAVSCGIYAGQPVLDLDYPEDSEAGVDGN 178
Query: 191 FVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
F+MT SG ++EVQ SAE + FS++ +++LA A+L +LQK
Sbjct: 179 FIMTGSGQLIEVQMSAEGSMFSREQMNTLMDLATKGTAELAELQKAA 225
>gi|91762476|ref|ZP_01264441.1| polyribonucleotide nucleotidyltransferase [Candidatus Pelagibacter
ubique HTCC1002]
gi|91718278|gb|EAS84928.1| polyribonucleotide nucleotidyltransferase [Candidatus Pelagibacter
ubique HTCC1002]
Length = 690
Score = 164 bits (415), Expect = 9e-39, Method: Composition-based stats.
Identities = 44/243 (18%), Positives = 83/243 (34%), Gaps = 19/243 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +R I V GS L G+T + TL +E+ +
Sbjct: 313 RIDGRGLADVRAIECEVGVLPRTHGSALFTRGETQAIVVTTLGTSDDEQRLESLDGQHRE 372
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + R+ G + RA+ S + I +
Sbjct: 373 RFMLHYNFPPFSVGETGRIGTGR-REVGHGKL----AWRAINSSLPPKEEFPYTFRIVSE 427
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ GA +AL D +++ + + +G ++ +
Sbjct: 428 ITESNGSSSMASVCGASLALMDAGVPIKEPVAGIAMGLIKEGDDFSVLSD---------I 478
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T G I +Q + + + L AK+ ++
Sbjct: 479 LGDEDHLGDMDFKVAGTKDG-ITSLQMDIKITGITFEIMEQALKQAKEGRIHILGEMNKA 537
Query: 238 ISN 240
+S
Sbjct: 538 LSE 540
Score = 108 bits (270), Expect = 5e-22, Method: Composition-based stats.
Identities = 38/229 (16%), Positives = 75/229 (32%), Gaps = 19/229 (8%)
Query: 13 EISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG 71
+ISL V++ A+G+ + G+T +L T +KV + E
Sbjct: 15 KISLETGKVARQADGAIIASCGETVILATVVGAKKVNPDMDYFPLSVNYQEKYYAGGKIP 74
Query: 72 NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAIT 131
R Q I R+I R +R + Q++ D AIT
Sbjct: 75 --GGYFKREARPTESEQLISRLIDRPIRPLFPSEFKNEVQLLPTVISYDKDNQPDILAIT 132
Query: 132 GAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANF 191
+ A G V A G++ G I++ E +D
Sbjct: 133 ASSAA-------------LAISGMPFMGPVGASRVGLVDGKYILNPSKAELENSTLDLVV 179
Query: 192 VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
T ++ V+ +E + +++ + + +I++ +++
Sbjct: 180 AGTKD-AVLMVE--SETSGLTEEVMLDAVKFGHEGFVPVIEMIEELAKE 225
>gi|146309763|ref|YP_001174837.1| ribonuclease PH [Enterobacter sp. 638]
gi|166991085|sp|A4W506|RNPH_ENT38 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|145316639|gb|ABP58786.1| RNAse PH [Enterobacter sp. 638]
Length = 238
Score = 164 bits (415), Expect = 9e-39, Method: Composition-based stats.
Identities = 124/240 (51%), Positives = 160/240 (66%), Gaps = 2/240 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR SGR NQ+R ++LTR +K+AEGS LV FGDT +L TA++EE VP +++ GWIT
Sbjct: 1 MRPSGRSANQVRPVTLTRNYTKHAEGSVLVAFGDTKVLCTASIEEGVPRFLKGQGQGWIT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPR+T R REA G+QGGR+ EIQR+I RALR+ VDL LG I +DCDVIQ
Sbjct: 61 AEYGMLPRATHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKVLGEFTITLDCDVIQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+ITGA VAL D L + +KG VAA+S G++ G + DL+Y
Sbjct: 121 ADGGTRTASITGACVALADALNKLIAA--GKLKKNPMKGMVAAVSVGIVNGEALCDLEYV 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
EDS + D N VMT+ G I+EVQG+AE F+ + +L LA+ I ++ QK + N
Sbjct: 179 EDSVAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLTLLALARGGIESIVTTQKAALQN 238
>gi|224282438|ref|ZP_03645760.1| ribonuclease PH [Bifidobacterium bifidum NCIMB 41171]
gi|311063782|ref|YP_003970507.1| ribonuclease PH Rph [Bifidobacterium bifidum PRL2010]
gi|313139586|ref|ZP_07801779.1| RNase PH [Bifidobacterium bifidum NCIMB 41171]
gi|310866101|gb|ADP35470.1| Rph Ribonuclease PH [Bifidobacterium bifidum PRL2010]
gi|313132096|gb|EFR49713.1| RNase PH [Bifidobacterium bifidum NCIMB 41171]
Length = 254
Score = 164 bits (415), Expect = 9e-39, Method: Composition-based stats.
Identities = 109/239 (45%), Positives = 155/239 (64%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+R GR +++R + +TR + EGS L++ G+T ++ TAT VP W +++ GW+T
Sbjct: 14 IRADGRVVDELRPVRITRHFTDVPEGSVLIECGNTRVMCTATFTPSVPRWRKDSGLGWVT 73
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEY MLPR+T R RE+V G+ GGR+ EI R+IGR LR VVD+ ALG QI IDCDV+Q
Sbjct: 74 AEYSMLPRATAERTDRESVRGKVGGRTHEISRLIGRCLRGVVDMKALGENQIQIDCDVLQ 133
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+ITGA+VAL D ++ E + +VLK V+A+S G++ G P++DL Y
Sbjct: 134 ADGGTRTASITGAYVALVDAMRWAEQKRHIRSADRVLKDAVSAVSVGVINGTPMLDLPYI 193
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
EDS D N MT SG +E+QG+AE F++ +L+LA+ +L Q+ +S
Sbjct: 194 EDSQAMTDMNVAMTGSGDFIEIQGTAEHRPFNRAELNTLLDLAEKGNKELQAAQRAALS 252
>gi|325068398|ref|ZP_08127071.1| ribonuclease PH [Actinomyces oris K20]
Length = 268
Score = 164 bits (415), Expect = 9e-39, Method: Composition-based stats.
Identities = 106/240 (44%), Positives = 146/240 (60%), Gaps = 2/240 (0%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R GR +++R +++TR +AEGS LV FG T +L A+ E VP W + + GW+TA
Sbjct: 8 RKDGRAVDELRPVTMTRHWLDHAEGSVLVTFGRTRVLCAASFTEGVPRWRKGSGEGWVTA 67
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
EY MLPR+ R RE+V G+ GGR+ EI R+IGR+LR ++D++ALG I +DCDV+QA
Sbjct: 68 EYAMLPRAGSERSGRESVRGKVGGRTHEISRLIGRSLRGIIDVAALGENTIALDCDVLQA 127
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLS--QVLKGHVAAISCGMLCGYPIVDLDY 179
DGGTRTAAITGA+VAL D + VL ++AIS G++ G P +DL Y
Sbjct: 128 DGGTRTAAITGAYVALADAVAWGTQRGLIKARPGRPVLSDSLSAISVGIIDGVPCLDLPY 187
Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
ED D N V T G +EVQG+AE A F + +L+LA + L LQ+ ++
Sbjct: 188 EEDVRAQTDMNVVQTGDGRFIEVQGTAEHAPFDRSELGELLDLAATGNSRLAALQRQALA 247
>gi|149204437|ref|ZP_01881404.1| polynucleotide phosphorylase/polyadenylase [Roseovarius sp. TM1035]
gi|149142322|gb|EDM30369.1| polynucleotide phosphorylase/polyadenylase [Roseovarius sp. TM1035]
Length = 713
Score = 164 bits (415), Expect = 1e-38, Method: Composition-based stats.
Identities = 45/242 (18%), Positives = 90/242 (37%), Gaps = 17/242 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR+ +++R I + GS L G+T L TL +E+ +
Sbjct: 318 RIDGRRLDEIRPIVCETGLLPRTHGSSLFTRGETQALVVTTLGTGDDEQFIDALHGNFKS 377
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + A R+ G + RAL++V+ + + + +
Sbjct: 378 NFLLHYNFPPYSVGEAGRVGAPGRREIGHGKL----AWRALQAVLPPATDFPYTVRLVSE 433
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ G +++ D ++ + VL+ + + D+
Sbjct: 434 ITESNGSSSMASVCGGSLSMMDAGVPLKTSVAGVAMGLVLEEDGS--------FAILSDI 485
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T G I +Q + A + + L AK ++
Sbjct: 486 LGDEDHLGDMDFKVAGTADG-ITSLQMDIKVAGITPEIMKKALEQAKAGRLHILGEMNKA 544
Query: 238 IS 239
+S
Sbjct: 545 LS 546
Score = 99 bits (247), Expect = 3e-19, Method: Composition-based stats.
Identities = 25/228 (10%), Positives = 63/228 (27%), Gaps = 25/228 (10%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGN 72
++L +++ A+G+ + G+T ++ T ++ E
Sbjct: 16 LTLETGKIARQADGTVIATLGETSVMANVTFAKEAKPGQDFFPLTVHYQEKYYAAGKVP- 74
Query: 73 RVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITG 132
R + R+I R +R + ++ A+
Sbjct: 75 -GGFFKREARPSEKETLTARLIDRPIRPLFVPGFKHETLVMCTVLSHDLVNDPDIVALIA 133
Query: 133 AWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDST------ID 186
A G +A G + G I++ + +
Sbjct: 134 TSAA-------------LTISGAPFMGPIAGCRVGFVDGEYILNPEIDDMHDLRNNPEQR 180
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
+D T ++ V+ A +++ + A +++ + L
Sbjct: 181 LDLVVAGTKD-AVMMVESEAYE--LTEEEMLGAVTFAHEQLKPVCDLI 225
>gi|330817796|ref|YP_004361501.1| Polyribonucleotide nucleotidyltransferase [Burkholderia gladioli
BSR3]
gi|327370189|gb|AEA61545.1| Polyribonucleotide nucleotidyltransferase [Burkholderia gladioli
BSR3]
Length = 712
Score = 164 bits (414), Expect = 1e-38, Method: Composition-based stats.
Identities = 48/242 (19%), Positives = 94/242 (38%), Gaps = 18/242 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHG 57
R+ GR +R I + V GS L G+T L AT +E++ +
Sbjct: 322 RIDGRDTRTVRPIEIRSGVLPRTHGSALFTRGETQALVVATLGTKGDEQIIDALEGEYRE 381
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y M P +TG + + R+ G + RAL + + + I + +
Sbjct: 382 RFMLHYNMPPFATGETGRVGSPKRREVGHGRL----AKRALVACLPSAEEFGYSIRVVSE 437
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ G +AL D M+ + +L+G+ A+ +
Sbjct: 438 ITESNGSSSMASVCGGCLALMDAGVPMKAHVAGIAMGLILEGNKFAVLTD---------I 488
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T++G + +Q + +++ L AK+ ++ K
Sbjct: 489 LGDEDHLGDMDFKVAGTEAG-VTALQMDIKIQGITKEIMQVALEQAKEGRLHILGKMKGA 547
Query: 238 IS 239
+S
Sbjct: 548 VS 549
Score = 96.8 bits (239), Expect = 2e-18, Method: Composition-based stats.
Identities = 35/233 (15%), Positives = 72/233 (30%), Gaps = 27/233 (11%)
Query: 13 EISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT----KHGWITAEYGMLP 67
++ L +++ A G+ +V DT +L T + + T G +P
Sbjct: 17 KVRLETGEIARQASGAVIVDVEDTVVLATVVGAKTAKPGQDFFPLTVDYLEKTYSAGKIP 76
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R GR R+I R LR + Q++I I +
Sbjct: 77 GGFFRR------EGRPSEHETLTSRLIDRPLRPLFPEGFYNEVQVVIHVLSINPEVPADI 130
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
A+ GA A G V A + +++ + +
Sbjct: 131 PALIGASAA-------------LAVSGLPFNGPVGAARVAYIDSQYVLNPTREQIKASSL 177
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
D T+ ++ V+ A++ +D + +++ I +++
Sbjct: 178 DLVVAGTER-AVLMVESEAQQ--LPEDVMLGAVVFGHEQMQVAIDAIHELVRE 227
>gi|325266593|ref|ZP_08133270.1| tRNA nucleotidyltransferase [Kingella denitrificans ATCC 33394]
gi|324982036|gb|EGC17671.1| tRNA nucleotidyltransferase [Kingella denitrificans ATCC 33394]
Length = 292
Score = 164 bits (414), Expect = 1e-38, Method: Composition-based stats.
Identities = 112/237 (47%), Positives = 161/237 (67%), Gaps = 3/237 (1%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R R + +R I++T +A+GS L+ G+T ++ TAT++E +P ++R GW+TA
Sbjct: 55 RTD-RATDALRPITITPNFLPHADGSVLMACGNTKVICTATIDENIPPFLRGKGQGWVTA 113
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
EYGMLP ST +R+KREA +G+Q GR+QEIQR+IGR+LR+ VD++ LG RQI+IDCDVIQA
Sbjct: 114 EYGMLPASTQSRMKREAAAGKQSGRTQEIQRLIGRSLRAAVDMTKLGERQILIDCDVIQA 173
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
DGGTRTA+ITGA+VAL ++ + + V VAAIS G++ G P++DLDY E
Sbjct: 174 DGGTRTASITGAFVALQIAVRKLLADGRIAENPLVGS--VAAISVGVVGGVPLLDLDYPE 231
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
DS D D N VM ++ I+E+QG+AE A F D ++ L + I +L +LQ+ +
Sbjct: 232 DSGCDSDINLVMLNADKIIEIQGTAEGAAFGMDELQQLVALGQKGIRELSELQRQAV 288
>gi|190575702|ref|YP_001973547.1| ribonuclease PH [Stenotrophomonas maltophilia K279a]
gi|226736944|sp|B2FT17|RNPH_STRMK RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|190013624|emb|CAQ47259.1| putative ribonuclease PH [Stenotrophomonas maltophilia K279a]
Length = 241
Score = 164 bits (414), Expect = 1e-38, Method: Composition-based stats.
Identities = 116/228 (50%), Positives = 155/228 (67%), Gaps = 2/228 (0%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R SGRQ +Q+R + + R +++AEGS LV FG+T +L TA++E +VP ++R GW+TA
Sbjct: 5 RPSGRQPDQLRPVVIQRGFTRHAEGSVLVCFGETRVLCTASVENRVPGFLRGKGEGWVTA 64
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
EYGMLPR+T R REA G+QGGR+ EIQR+IGR+LR+ VD +ALG R I +DCDV+QA
Sbjct: 65 EYGMLPRATHTRSDREAARGKQGGRTLEIQRLIGRSLRACVDRNALGERTITLDCDVLQA 124
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
DGGTRTAAITGA+VAL D + + G VAA+S G+ G P++DLDY E
Sbjct: 125 DGGTRTAAITGAYVALVDAVN--VLMKRGDIKRNPILGAVAAVSVGVYRGTPVLDLDYAE 182
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIAD 229
DS D D N VM D G +E+QG+AE F +D A+L LA+ + +
Sbjct: 183 DSDCDTDMNVVMNDGGGFIELQGTAEGHAFRRDELDALLGLAEKGVGE 230
>gi|221211731|ref|ZP_03584710.1| polyribonucleotide nucleotidyltransferase [Burkholderia multivorans
CGD1]
gi|221169092|gb|EEE01560.1| polyribonucleotide nucleotidyltransferase [Burkholderia multivorans
CGD1]
Length = 713
Score = 164 bits (414), Expect = 1e-38, Method: Composition-based stats.
Identities = 46/242 (19%), Positives = 92/242 (38%), Gaps = 18/242 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHG 57
R+ GR +R I + V GS L G+T L AT +E++ +
Sbjct: 320 RIDGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQALVVATLGTKGDEQIIDALEGEYRE 379
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y M P +TG + + R+ G + RAL + + + I + +
Sbjct: 380 RFMLHYNMPPFATGETGRVGSPKRREIGHGRL----AKRALVACLPSAEEFGYSIRVVSE 435
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ G +AL D M+ + +L+G+ A+ +
Sbjct: 436 ITESNGSSSMASVCGGCLALMDAGVPMKAHVAGIAMGLILEGNKFAVLTD---------I 486
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T G + +Q + +++ L AK+ ++ +
Sbjct: 487 LGDEDHLGDMDFKVAGTAQG-VTALQMDIKIQGITKEIMQVALAQAKEGRMHILGKMTEA 545
Query: 238 IS 239
++
Sbjct: 546 VA 547
Score = 96.5 bits (238), Expect = 3e-18, Method: Composition-based stats.
Identities = 33/233 (14%), Positives = 73/233 (31%), Gaps = 27/233 (11%)
Query: 13 EISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT----KHGWITAEYGMLP 67
++ L +++ A G+ +V DT +L T + + T G +P
Sbjct: 15 KVRLETGEIARQASGAVIVDVEDTVVLATVVGAKSAKPGQDFFPLTVDYIEKTYSAGKIP 74
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R GR R+I R LR + Q++I + +
Sbjct: 75 GGFFRR------EGRPSEHETLTSRLIDRPLRPLFPEGFYNEVQVVIHVLSVNPEIPADI 128
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
A+ GA A G V A + +++ + + +
Sbjct: 129 PALIGASAA-------------LAVSGLPFNGPVGAARVAYVNDQYVLNPTREQLKSSRL 175
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
D T+ ++ V+ +E ++ + +++ I +++ +
Sbjct: 176 DLVVAGTER-AVLMVE--SEADQLPEEVMLGAVVFGHEQMQTAIDAIHELVRD 225
>gi|103486036|ref|YP_615597.1| polynucleotide phosphorylase/polyadenylase [Sphingopyxis alaskensis
RB2256]
gi|123380103|sp|Q1GVQ8|PNP_SPHAL RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|98976113|gb|ABF52264.1| 3' exoribonuclease [Sphingopyxis alaskensis RB2256]
Length = 771
Score = 164 bits (414), Expect = 1e-38, Method: Composition-based stats.
Identities = 53/243 (21%), Positives = 92/243 (37%), Gaps = 18/243 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKHG 57
R+ GR Q+R I A GS L G+T + T TL E++ + +
Sbjct: 316 RIDGRTTTQIRPIVAETHFLPRAHGSALFTRGETQTIATCTLGTKDAEQMIDGLNGLSYQ 375
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + A R+ G + RAL V+ I + D
Sbjct: 376 HFMLHYNFPPYSVGEVGRFGAPGRREVGHGKL----AWRALHPVLPSKDEFPYTIRLTSD 431
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ G +A+ D ++ + + +L+G AI +
Sbjct: 432 ITESNGSSSMASVCGGSLAMMDAGVPIKRPVSGIAMGLILEGKDYAILSD---------I 482
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T G I +Q + A +++ F A L AK+ A ++
Sbjct: 483 LGDEDHLGDMDFKVAGTSEG-ITTMQMDIKIAGITREIFEAALAQAKEGRAHILGEMNKA 541
Query: 238 ISN 240
+
Sbjct: 542 LGE 544
Score = 107 bits (267), Expect = 1e-21, Method: Composition-based stats.
Identities = 35/233 (15%), Positives = 73/233 (31%), Gaps = 28/233 (12%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT----KHGWITAEYGMLPR 68
++L V++ A+G+ + G+T +L T + V + + G +P
Sbjct: 16 LTLETGKVARQADGAVIATLGETVVLCAVTAAKSVKDGQDFFPLTVHYQEKYSAAGRIPG 75
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
R + + + R+I R +R + I
Sbjct: 76 GFFKRERGA------TEKETLVSRLIDRPIRPLFPEGFYNEINAIAQVLSYDGHNEPDIL 129
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+ A A G + A G L G I++ + + D+D
Sbjct: 130 AMVAASAA-------------LTISGVPFMGPIGAARVGYLNGEYILNPTDEQVAEGDLD 176
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
T ++ V+ A S++ + A D +++K ++ +
Sbjct: 177 LVVAATHD-AVMMVESEANE--LSEEVMLGAVLFAHDACKEVVKAIIK-LAEQ 225
>gi|298293847|ref|YP_003695786.1| polyribonucleotide nucleotidyltransferase [Starkeya novella DSM
506]
gi|296930358|gb|ADH91167.1| polyribonucleotide nucleotidyltransferase [Starkeya novella DSM
506]
Length = 718
Score = 164 bits (414), Expect = 1e-38, Method: Composition-based stats.
Identities = 51/242 (21%), Positives = 91/242 (37%), Gaps = 18/242 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
+R+ GR +R I V A GS L G+T L ATL +E+ + T
Sbjct: 317 VRIDGRDTKTVRPIVSEVGVLPRAHGSALFTRGETQALVVATLGTGEDEQFIDSLEGTYK 376
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P S G + + R+ G + RA+R ++ + +
Sbjct: 377 ERFLLHYNFPPFSVGETGRMGSPGRREIGHGKL----AWRAIRPILPPAHEFPYTLRAVS 432
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
++++++G + A + G +AL D M + +L+G A+
Sbjct: 433 EILESNGSSSMATVCGTSLALMDAGVPMRRPVAGIAMGLILEGEKFAVLSD--------- 483
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D TD G + +Q + A +++ L AKD A ++
Sbjct: 484 ILGDEDHLGDMDFKVAGTDKG-VTALQMDIKIAGITEEIMKVALAQAKDGRAHILGEMAK 542
Query: 237 VI 238
+
Sbjct: 543 AL 544
Score = 98.8 bits (244), Expect = 6e-19, Method: Composition-based stats.
Identities = 31/228 (13%), Positives = 68/228 (29%), Gaps = 27/228 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----HGWITAEYGML 66
R + L +++ A+G+ L +GDT +L TA + + G +
Sbjct: 14 RTLVLETGRMARQADGAVLATYGDTTVLATAVSAKAPKPGQDFFPLTVNYQEKAYAAGRI 73
Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
P R GR + + R+I R +R + Q+++ +
Sbjct: 74 PGGYFKR------EGRPSEKETLVSRLIDRPIRPLFAEGYKNDTQVVVTVLSHDLENDPD 127
Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
++ A A G + G + +++ E
Sbjct: 128 VVSMVAASAA-------------LTLSGVPFMGPIGGARVGFIDNEYVLNPTLDEVKESA 174
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
+D T ++ V+ A+ +++ + +I
Sbjct: 175 LDLVVAGTAD-AVLMVESEAKE--LAEEVMLGAVMFGHRHFQPVIDAI 219
>gi|74316711|ref|YP_314451.1| polynucleotide phosphorylase/polyadenylase [Thiobacillus
denitrificans ATCC 25259]
gi|123759157|sp|Q3SKX5|PNP_THIDA RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|74056206|gb|AAZ96646.1| polyribonucleotide nucleotidyltransferase protein [Thiobacillus
denitrificans ATCC 25259]
Length = 706
Score = 164 bits (414), Expect = 1e-38, Method: Composition-based stats.
Identities = 47/243 (19%), Positives = 97/243 (39%), Gaps = 18/243 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +R I++ V A GS L G+T L TL +E+ + +
Sbjct: 315 RIDGRDTRTVRPITIRTGVLPRAHGSALFTRGETQALVVTTLGTGRDEQTIDALEGSYSD 374
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y M P +TG + + R+ G + RAL +V+ + + +
Sbjct: 375 RFMLHYNMPPYATGETGRVGSPKRREIGHGRL----AKRALLAVLPSKEEFGYTMRVVSE 430
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ G ++L D ++ + + +G+ A+ +
Sbjct: 431 ITESNGSSSMASVCGGCLSLMDAGAPLKAHVAGIAMGLIKEGNRFAVLTD---------I 481
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T++G + +Q + +++ A L AK+ ++ + K
Sbjct: 482 LGDEDHLGDMDFKVAGTENG-VTALQMDIKITGITKEIMQAALTQAKEGRMHILGIMKAS 540
Query: 238 ISN 240
+S
Sbjct: 541 VSE 543
Score = 96.1 bits (237), Expect = 4e-18, Method: Composition-based stats.
Identities = 40/233 (17%), Positives = 74/233 (31%), Gaps = 28/233 (12%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT----KHGWITAEYGMLPR 68
++L +++ A G+ +V DT +L T + +V + T G +P
Sbjct: 15 VTLETGEIARQASGAVVVNMDDTMVLVTVVAKNEVKPGQDFFPLTVDYQEKTYAAGRIPG 74
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
R R I R+I R +R + QII +
Sbjct: 75 GFLKR------ESRPSEGETLISRLIDRPIRPLFPEGFFNEVQIIATVMSSNPEVSADIP 128
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+ GA A G V A G + G +++ E +D
Sbjct: 129 ALIGASAA-------------LSLSGLPFDGPVGAARVGFINGEYVLNPTNAELKDSALD 175
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
T+S ++ V+ A +D + ++ I + +++E
Sbjct: 176 LVVAGTES-AVLMVESEAME--LPEDIMLGAVVFGHTQMQAAINAINE-LADE 224
>gi|170728887|ref|YP_001762913.1| ribonuclease PH [Shewanella woodyi ATCC 51908]
gi|226736940|sp|B1KL12|RNPH_SHEWM RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|169814234|gb|ACA88818.1| ribonuclease PH [Shewanella woodyi ATCC 51908]
Length = 237
Score = 164 bits (414), Expect = 1e-38, Method: Composition-based stats.
Identities = 120/239 (50%), Positives = 164/239 (68%), Gaps = 2/239 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR + R Q R +++TR+ + +AEGS LV+FG+T +L TA+ E VP +++ GW+T
Sbjct: 1 MRPNDRTPAQSRPVTITRQFTAHAEGSVLVEFGETKVLCTASFTEGVPRFLKGKGQGWVT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPRST +R+ REA G+Q GR+QEIQR+IGR+LR+ VD+ ALG I+IDCDVIQ
Sbjct: 61 AEYGMLPRSTHSRMDREAARGKQSGRTQEIQRLIGRSLRAAVDMKALGENTIVIDCDVIQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTAAITGA VAL D L + LK +AA+S G+ G PI DL+Y
Sbjct: 121 ADGGTRTAAITGACVALVDALNW--ARGKGILKNNPLKFLIAAVSVGIYKGEPICDLEYI 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
EDS + D N VMT++G ++E+QG+AE FS + ++L LAK I +++ +QK +S
Sbjct: 179 EDSEAETDMNVVMTETGKMIEIQGTAEGEPFSHEELLSLLELAKHGIREIVDVQKAALS 237
>gi|221199652|ref|ZP_03572696.1| polyribonucleotide nucleotidyltransferase [Burkholderia multivorans
CGD2M]
gi|221205448|ref|ZP_03578463.1| polyribonucleotide nucleotidyltransferase [Burkholderia multivorans
CGD2]
gi|221174286|gb|EEE06718.1| polyribonucleotide nucleotidyltransferase [Burkholderia multivorans
CGD2]
gi|221180937|gb|EEE13340.1| polyribonucleotide nucleotidyltransferase [Burkholderia multivorans
CGD2M]
Length = 715
Score = 164 bits (414), Expect = 1e-38, Method: Composition-based stats.
Identities = 46/242 (19%), Positives = 92/242 (38%), Gaps = 18/242 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHG 57
R+ GR +R I + V GS L G+T L AT +E++ +
Sbjct: 322 RIDGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQALVVATLGTKGDEQIIDALEGEYRE 381
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y M P +TG + + R+ G + RAL + + + I + +
Sbjct: 382 RFMLHYNMPPFATGETGRVGSPKRREIGHGRL----AKRALVACLPSAEEFGYSIRVVSE 437
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ G +AL D M+ + +L+G+ A+ +
Sbjct: 438 ITESNGSSSMASVCGGCLALMDAGVPMKAHVAGIAMGLILEGNKFAVLTD---------I 488
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T G + +Q + +++ L AK+ ++ +
Sbjct: 489 LGDEDHLGDMDFKVAGTAQG-VTALQMDIKIQGITKEIMQVALAQAKEGRMHILGKMTEA 547
Query: 238 IS 239
++
Sbjct: 548 VA 549
Score = 97.2 bits (240), Expect = 2e-18, Method: Composition-based stats.
Identities = 34/233 (14%), Positives = 74/233 (31%), Gaps = 27/233 (11%)
Query: 13 EISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT----KHGWITAEYGMLP 67
++ L +++ A G+ +V DT +L T + + T G +P
Sbjct: 17 KVRLETGEIARQASGAVIVDVEDTVVLATVVGAKSAKPGQDFFPLTVDYIEKTYSAGKIP 76
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R GR R+I R LR + Q++I + +
Sbjct: 77 GGFFRR------EGRPSEHETLTSRLIDRPLRPLFPEGFYNEVQVVIHVLSVNPEIPADI 130
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
A+ GA A G V A + +++ + + +
Sbjct: 131 PALIGASAA-------------LAVSGLPFNGPVGAARVAYVNDQYVLNPTREQLKSSRL 177
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
D T+ ++ V+ +E S++ + +++ I +++ +
Sbjct: 178 DLVVAGTER-AVLMVE--SEADQLSEEVMLGAVVFGHEQMQTAIDAIHELVRD 227
>gi|183984013|ref|YP_001852304.1| ribonuclease RphA [Mycobacterium marinum M]
gi|183177339|gb|ACC42449.1| ribonuclease RphA [Mycobacterium marinum M]
Length = 276
Score = 164 bits (414), Expect = 1e-38, Method: Composition-based stats.
Identities = 108/238 (45%), Positives = 156/238 (65%), Gaps = 1/238 (0%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R GR+++++R + +TR ++ GS L++FG T ++ TA++ E VP W + + GW+TA
Sbjct: 21 REDGRRDDELRPVVITRGFTENPAGSVLIEFGRTKVMCTASVTEGVPRWRKGSGLGWLTA 80
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
EY MLP +T R RE+V GR GGR+QEI R++GR+LR+ +DL+ALG I +DCDV+QA
Sbjct: 81 EYAMLPSATHTRSDRESVKGRVGGRTQEISRLVGRSLRACIDLAALGENTIAVDCDVLQA 140
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
DGGTRTAAITGA+VAL D + + K + L +AA+S G++ G VDL Y E
Sbjct: 141 DGGTRTAAITGAYVALADA-VNYLAAAGKLSDPRPLSCAIAAVSVGVVDGRVRVDLPYEE 199
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
DS +VD N V TD+G +VEVQG+ E ATF + +L++A L Q+D ++
Sbjct: 200 DSRAEVDMNVVATDTGTLVEVQGTGEGATFPRSTLDKLLDMALGACDTLFAAQRDALA 257
>gi|161524200|ref|YP_001579212.1| polynucleotide phosphorylase/polyadenylase [Burkholderia
multivorans ATCC 17616]
gi|189351043|ref|YP_001946671.1| polynucleotide phosphorylase/polyadenylase [Burkholderia
multivorans ATCC 17616]
gi|226702628|sp|A9AJP0|PNP_BURM1 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|160341629|gb|ABX14715.1| Polyribonucleotide nucleotidyltransferase [Burkholderia multivorans
ATCC 17616]
gi|189335065|dbj|BAG44135.1| polyribonucleotide nucleotidyltransferase [Burkholderia multivorans
ATCC 17616]
Length = 715
Score = 164 bits (414), Expect = 1e-38, Method: Composition-based stats.
Identities = 46/242 (19%), Positives = 92/242 (38%), Gaps = 18/242 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHG 57
R+ GR +R I + V GS L G+T L AT +E++ +
Sbjct: 322 RIDGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQALVVATLGTKGDEQIIDALEGEYRE 381
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y M P +TG + + R+ G + RAL + + + I + +
Sbjct: 382 RFMLHYNMPPFATGETGRVGSPKRREIGHGRL----AKRALVACLPSAEEFGYSIRVVSE 437
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ G +AL D M+ + +L+G+ A+ +
Sbjct: 438 ITESNGSSSMASVCGGCLALMDAGVPMKAHVAGIAMGLILEGNKFAVLTD---------I 488
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T G + +Q + +++ L AK+ ++ +
Sbjct: 489 LGDEDHLGDMDFKVAGTAQG-VTALQMDIKIQGITKEIMQVALAQAKEGRMHILGKMTEA 547
Query: 238 IS 239
++
Sbjct: 548 VA 549
Score = 96.1 bits (237), Expect = 4e-18, Method: Composition-based stats.
Identities = 33/233 (14%), Positives = 73/233 (31%), Gaps = 27/233 (11%)
Query: 13 EISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT----KHGWITAEYGMLP 67
++ L +++ A G+ +V DT +L T + + T G +P
Sbjct: 17 KVRLETGEIARQASGAVIVDVEDTVVLATVVGAKSAKPGQDFFPLTVDYIEKTYSAGKIP 76
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R GR R+I R LR + Q++I + +
Sbjct: 77 GGFFRR------EGRPSEHETLTSRLIDRPLRPLFPEGFYNEVQVVIHVLSVNPEIPADI 130
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
A+ GA A G V A + +++ + + +
Sbjct: 131 PALIGASAA-------------LAVSGLPFNGPVGAARVAYVNDQYVLNPTREQLKSSRL 177
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
D T+ ++ V+ +E ++ + +++ I +++ +
Sbjct: 178 DLVVAGTER-AVLMVE--SEADQLPEEVMLGAVVFGHEQMQTAIDAIHELVRD 227
>gi|317402106|gb|EFV82699.1| polyribonucleotide nucleotidyltransferase [Achromobacter
xylosoxidans C54]
Length = 718
Score = 164 bits (414), Expect = 1e-38, Method: Composition-based stats.
Identities = 49/241 (20%), Positives = 94/241 (39%), Gaps = 18/241 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +R IS+ V A GS L G+T L ATL +E++ +
Sbjct: 320 RIDGRDTRTVRPISVRLGVLPRAHGSALFTRGETQALVVATLGTKQDEQIIDALMGEYRD 379
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y M P +TG + R+ G + RAL ++ I I +
Sbjct: 380 RFMLHYNMPPFATGETGRIGVPKRREIGHGRL----AKRALIPLLPAPEDFQYTIRIVSE 435
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ G +A+ D ++D + +L G A+ +
Sbjct: 436 ITESNGSSSMASVCGGSLAMMDAGVPVKDHVAGVAMGLILDGGKFAVLTD---------I 486
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T++G + +Q + +++ L A++ ++ K+
Sbjct: 487 LGDEDHLGDMDFKVAGTENG-VTALQMDIKIQGITKEIMQVALAQAREGRLHILGKMKEA 545
Query: 238 I 238
+
Sbjct: 546 L 546
Score = 96.5 bits (238), Expect = 3e-18, Method: Composition-based stats.
Identities = 35/232 (15%), Positives = 79/232 (34%), Gaps = 27/232 (11%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPM----WIRNTKHGWITAEYGMLPR 68
+ L +++ A G+ +V DT +L T +K + + T G +P
Sbjct: 16 VVLETGEIARQASGAVVVSIEDTVVLATVVASKKAKPGQTFFPLTVDYIEKTYAAGRIPG 75
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
R G+ + R+I R LR + Q++I + +
Sbjct: 76 GFFKR------EGKPSEKETLTSRLIDRPLRPLFPEDFYNEVQVVIHTLSVNPEIDPDIP 129
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+ GA A G + A G + G ++ + + +D
Sbjct: 130 AMIGASAA-------------LAISGIPFNGPIGAARVGYIDGQYAINPTASQLKSSKLD 176
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
T++ ++ V+ +E S++ + +++ +I +++ +
Sbjct: 177 LVVAGTEN-AVLMVE--SEADQLSEEIMLGGVVYGHEQMQAVINAIHELVKD 225
>gi|59801347|ref|YP_208059.1| putative ribonuclease PH [Neisseria gonorrhoeae FA 1090]
gi|194098405|ref|YP_002001463.1| ribonuclease PH [Neisseria gonorrhoeae NCCP11945]
gi|239998810|ref|ZP_04718734.1| putative ribonuclease PH [Neisseria gonorrhoeae 35/02]
gi|240014274|ref|ZP_04721187.1| putative ribonuclease PH [Neisseria gonorrhoeae DGI18]
gi|240016710|ref|ZP_04723250.1| putative ribonuclease PH [Neisseria gonorrhoeae FA6140]
gi|240080902|ref|ZP_04725445.1| putative ribonuclease PH [Neisseria gonorrhoeae FA19]
gi|240112738|ref|ZP_04727228.1| putative ribonuclease PH [Neisseria gonorrhoeae MS11]
gi|240115487|ref|ZP_04729549.1| putative ribonuclease PH [Neisseria gonorrhoeae PID18]
gi|240117781|ref|ZP_04731843.1| putative ribonuclease PH [Neisseria gonorrhoeae PID1]
gi|240121837|ref|ZP_04734799.1| putative ribonuclease PH [Neisseria gonorrhoeae PID24-1]
gi|240123337|ref|ZP_04736293.1| putative ribonuclease PH [Neisseria gonorrhoeae PID332]
gi|240125585|ref|ZP_04738471.1| putative ribonuclease PH [Neisseria gonorrhoeae SK-92-679]
gi|240128040|ref|ZP_04740701.1| putative ribonuclease PH [Neisseria gonorrhoeae SK-93-1035]
gi|254493595|ref|ZP_05106766.1| ribonuclease PH [Neisseria gonorrhoeae 1291]
gi|260440703|ref|ZP_05794519.1| ribonuclease PH [Neisseria gonorrhoeae DGI2]
gi|268594653|ref|ZP_06128820.1| ribonuclease PH [Neisseria gonorrhoeae 35/02]
gi|268597020|ref|ZP_06131187.1| ribonuclease PH [Neisseria gonorrhoeae FA19]
gi|268598803|ref|ZP_06132970.1| ribonuclease PH [Neisseria gonorrhoeae MS11]
gi|268601161|ref|ZP_06135328.1| ribonuclease PH [Neisseria gonorrhoeae PID18]
gi|268603481|ref|ZP_06137648.1| ribonuclease PH [Neisseria gonorrhoeae PID1]
gi|268681961|ref|ZP_06148823.1| ribonuclease PH [Neisseria gonorrhoeae PID332]
gi|268684174|ref|ZP_06151036.1| ribonuclease PH [Neisseria gonorrhoeae SK-92-679]
gi|268686430|ref|ZP_06153292.1| ribonuclease PH [Neisseria gonorrhoeae SK-93-1035]
gi|291044013|ref|ZP_06569729.1| ribonuclease PH [Neisseria gonorrhoeae DGI2]
gi|293399206|ref|ZP_06643371.1| ribonuclease PH [Neisseria gonorrhoeae F62]
gi|75432481|sp|Q5F840|RNPH_NEIG1 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|226736920|sp|B4RL28|RNPH_NEIG2 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|59718242|gb|AAW89647.1| putative ribonuclease PH [Neisseria gonorrhoeae FA 1090]
gi|193933695|gb|ACF29519.1| putative ribonuclease PH [Neisseria gonorrhoeae NCCP11945]
gi|226512635|gb|EEH61980.1| ribonuclease PH [Neisseria gonorrhoeae 1291]
gi|268548042|gb|EEZ43460.1| ribonuclease PH [Neisseria gonorrhoeae 35/02]
gi|268550808|gb|EEZ45827.1| ribonuclease PH [Neisseria gonorrhoeae FA19]
gi|268582934|gb|EEZ47610.1| ribonuclease PH [Neisseria gonorrhoeae MS11]
gi|268585292|gb|EEZ49968.1| ribonuclease PH [Neisseria gonorrhoeae PID18]
gi|268587612|gb|EEZ52288.1| ribonuclease PH [Neisseria gonorrhoeae PID1]
gi|268622245|gb|EEZ54645.1| ribonuclease PH [Neisseria gonorrhoeae PID332]
gi|268624458|gb|EEZ56858.1| ribonuclease PH [Neisseria gonorrhoeae SK-92-679]
gi|268626714|gb|EEZ59114.1| ribonuclease PH [Neisseria gonorrhoeae SK-93-1035]
gi|291012476|gb|EFE04465.1| ribonuclease PH [Neisseria gonorrhoeae DGI2]
gi|291610620|gb|EFF39730.1| ribonuclease PH [Neisseria gonorrhoeae F62]
gi|317164098|gb|ADV07639.1| ribonuclease PH [Neisseria gonorrhoeae TCDC-NG08107]
Length = 242
Score = 164 bits (414), Expect = 1e-38, Method: Composition-based stats.
Identities = 114/239 (47%), Positives = 164/239 (68%), Gaps = 3/239 (1%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+R S R + +R+I +T + +GSCL++ G+T ++ TA+++E P ++ GW+T
Sbjct: 5 IRTS-RAADSLRDIKITPHFLPHTDGSCLIECGNTKVICTASVDENAPPFLHGKNQGWVT 63
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLP ST R++REA +G+Q GR+QEIQR+IGR+LR+VVD+ LG RQI+IDCDVIQ
Sbjct: 64 AEYGMLPASTALRMRREASAGKQSGRTQEIQRLIGRSLRAVVDMEKLGERQILIDCDVIQ 123
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+ITGA+VAL + + + VAA+S G++ G P++DLDY
Sbjct: 124 ADGGTRTASITGAFVALQIAVGKLVSD--GILSENPILEAVAAVSAGVVNGVPLLDLDYP 181
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
EDS D D N VMT SG I+E+QG+AE A FS D ++ LA+ I +L++ Q++ +S
Sbjct: 182 EDSGCDSDVNIVMTASGKIIEIQGTAEGAPFSLDELGKLVALAQKGIGELLRYQQNALS 240
>gi|134296437|ref|YP_001120172.1| polynucleotide phosphorylase/polyadenylase [Burkholderia
vietnamiensis G4]
gi|187470949|sp|A4JGD4|PNP_BURVG RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|134139594|gb|ABO55337.1| 3' exoribonuclease [Burkholderia vietnamiensis G4]
Length = 715
Score = 164 bits (414), Expect = 1e-38, Method: Composition-based stats.
Identities = 47/242 (19%), Positives = 91/242 (37%), Gaps = 18/242 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHG 57
R+ GR +R I + V GS L G+T L AT +E++ +
Sbjct: 322 RIDGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQALVVATLGTKGDEQIIDALEGEYRE 381
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y M P +TG + + R+ G + RAL + + I + +
Sbjct: 382 RFMLHYNMPPFATGETGRVGSPKRREIGHGRL----AKRALVKCLPSADEFGYSIRVVSE 437
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ G +AL D M+ + +L+G+ A+ +
Sbjct: 438 ITESNGSSSMASVCGGCLALMDAGVPMKAHVAGIAMGLILEGNKFAVLTD---------I 488
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T+ G + +Q + +++ L AK+ ++
Sbjct: 489 LGDEDHLGDMDFKVAGTEHG-VTALQMDIKIQGITKEIMQVALAQAKEGRMHILGKMTSA 547
Query: 238 IS 239
+S
Sbjct: 548 VS 549
Score = 94.9 bits (234), Expect = 9e-18, Method: Composition-based stats.
Identities = 36/233 (15%), Positives = 71/233 (30%), Gaps = 27/233 (11%)
Query: 13 EISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT----KHGWITAEYGMLP 67
++ L V++ A G+ +V DT +L T + + T G +P
Sbjct: 17 KVRLETGEVARQASGAVIVDVEDTVVLATVVGAKSAKPGQDFFPLTVDYLEKTYSAGKIP 76
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R GR R+I R LR + Q++I + D
Sbjct: 77 GGFFRR------EGRPSEHETLTSRLIDRPLRPLFPEGFYNEVQVVIHVLSVNPDIPADI 130
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
A+ GA A G V A + +++ + +
Sbjct: 131 PALIGASAA-------------LAVSGLPFNGPVGAARVAYIDNAYVLNPTRDQIKASSL 177
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
D T+ ++ V+ +E +D + +++ I +++
Sbjct: 178 DLVVAGTER-AVLMVE--SEADQLPEDVMLGAVVFGHEQMQIAIDAIHELVRE 227
>gi|212712586|ref|ZP_03320714.1| hypothetical protein PROVALCAL_03681 [Providencia alcalifaciens DSM
30120]
gi|212684802|gb|EEB44330.1| hypothetical protein PROVALCAL_03681 [Providencia alcalifaciens DSM
30120]
Length = 237
Score = 164 bits (414), Expect = 1e-38, Method: Composition-based stats.
Identities = 116/239 (48%), Positives = 159/239 (66%), Gaps = 2/239 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR +GR +QMR I +TR +K+AEGS L++FGDT +L AT+EE VP +++ GWIT
Sbjct: 1 MRPAGRLADQMRPIKITRNYTKHAEGSVLIEFGDTKVLCNATVEEGVPRFLKGQGQGWIT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPR+T +R +REA G+Q GR+ EIQR+I R+LR+ VDL LG I +DCDVIQ
Sbjct: 61 AEYGMLPRATNSRNQREAAKGKQTGRTMEIQRLIARSLRAAVDLKKLGEYTITLDCDVIQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+I+GA VAL D L +M + LK VAA+S G++ + DL+Y
Sbjct: 121 ADGGTRTASISGACVALVDALNNMVAQGKLAKS--PLKSMVAAVSVGIVGQEGLCDLEYV 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
EDS + D N VM + G ++EVQG+AE FS + +L LAK + + + Q++ +
Sbjct: 179 EDSAAETDMNVVMMEDGRMIEVQGTAEGEPFSHEELLELLALAKTGLDTIFEAQREALK 237
>gi|297569830|ref|YP_003691174.1| polyribonucleotide nucleotidyltransferase [Desulfurivibrio
alkaliphilus AHT2]
gi|296925745|gb|ADH86555.1| polyribonucleotide nucleotidyltransferase [Desulfurivibrio
alkaliphilus AHT2]
Length = 704
Score = 163 bits (413), Expect = 1e-38, Method: Composition-based stats.
Identities = 51/243 (20%), Positives = 97/243 (39%), Gaps = 18/243 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
+R+ R+ +++R I+ V GS L G+T +L +ATL +E+ +
Sbjct: 320 IRIDNRRLDEVRNITNEVGVLPRVHGSSLFTRGETQVLVSATLGSGEDEQRIESLSGMSF 379
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P G S R G RA+++V+ + I +
Sbjct: 380 KPFMLHYNFPPYCVGEVRFLRGPSRRDIGHGAL----AERAVQAVLPDAESFPYTIRVVS 435
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V++++G + A + GA ++L D M+ + + + +G AI
Sbjct: 436 EVLESNGSSSMATVCGASLSLMDAGVPMKKPVSGIAMGLIKEGDDIAILSD--------- 486
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T+ G I +Q + S++ A LN A++ ++ K+
Sbjct: 487 ILGDEDHLGDMDFKVAGTEDG-ITALQMDIKLEGVSREIMSAALNQAREGRLHILGKMKE 545
Query: 237 VIS 239
I+
Sbjct: 546 AIA 548
Score = 111 bits (276), Expect = 1e-22, Method: Composition-based stats.
Identities = 46/230 (20%), Positives = 84/230 (36%), Gaps = 26/230 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRN----TKHGWITAEYGML 66
R++++ ++K A GS LV +G + +L TAT + I ++ G +
Sbjct: 12 RKLTIETGRLAKQAGGSVLVTYGQSVVLVTATAAREPKENIDFLPLTIEYQERFYAVGRI 71
Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
P S R GR R+I R LR + QII +
Sbjct: 72 PGSFFRR-----EIGRPTENETLACRIIDRPLRPLFAQGYQHETQIIATVLSADQENDPD 126
Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
A+ GA A G +A + GM+ G +++ +
Sbjct: 127 LMAMLGASAA-------------LSVSQVPFLGPIAGVRVGMIDGQYVLNPSQEQRKNSR 173
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+D ++ +V V+G A + S++ + A + + L+ +QK+
Sbjct: 174 LDLIVAGSEK-AVVMVEGGA--DSLSEEEVKNGIFFAHESLQPLLAMQKE 220
>gi|262277778|ref|ZP_06055571.1| ribonuclease PH [alpha proteobacterium HIMB114]
gi|262224881|gb|EEY75340.1| ribonuclease PH [alpha proteobacterium HIMB114]
Length = 237
Score = 163 bits (413), Expect = 1e-38, Method: Composition-based stats.
Identities = 121/239 (50%), Positives = 170/239 (71%), Gaps = 3/239 (1%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR + R ++R + + A+GSCL+KFG+TH++ TA+ E+KVP W++ + GW+T
Sbjct: 1 MR-NNRSNTELRPVEIIPNYINNADGSCLIKFGNTHVICTASYEDKVPRWLKGSGKGWVT 59
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPRST R++REA +G+ GGR+ EIQR+IGR+LR+ +DLS LG I IDCDVIQ
Sbjct: 60 AEYGMLPRSTNERMRREASAGKIGGRTSEIQRLIGRSLRASIDLSLLGENLITIDCDVIQ 119
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+ITG +VAL+ C++ ++D K + +K HVAAISCG++ G +VDLDY
Sbjct: 120 ADGGTRTASITGGFVALNQCVKILQDK--KLINTNPIKNHVAAISCGVVNGETLVDLDYK 177
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
EDS DVDANFV+ + I+E+Q + E+ T S++ ML +K I LI+ QK+ +S
Sbjct: 178 EDSGADVDANFVINEKNEIIELQLTGEQTTCSEEKLNEMLKYSKQSIQLLIQKQKEALS 236
>gi|284053737|ref|ZP_06383947.1| ribonuclease PH [Arthrospira platensis str. Paraca]
Length = 241
Score = 163 bits (413), Expect = 2e-38, Method: Composition-based stats.
Identities = 93/238 (39%), Positives = 144/238 (60%), Gaps = 4/238 (1%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R GR+ +Q+R + +++A S L K G+T +L T T++ VP ++++T GW+TA
Sbjct: 5 RPDGRERDQLRPVQFELDYTQFAAASVLAKSGNTQVLCTVTIQPGVPRFLQDTGKGWLTA 64
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
EY MLP +T R R + GR+QEIQR+IGR+LR+ VDL A+G + +D DV+QA
Sbjct: 65 EYRMLPGATPQRQPR--ELMKLSGRTQEIQRLIGRSLRAAVDLQAMGEITVTVDADVLQA 122
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
D GTRT +I G +VAL M + + + +AAIS GM+ G ++DL+Y E
Sbjct: 123 DAGTRTTSINGGFVALAHAFNKMVKRGELKRSPIIHQ--IAAISVGMMHGEALLDLNYQE 180
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
D D+D N VM D I+E+QG+AE + +++ +L+ A+ I +L +LQ+ V+
Sbjct: 181 DVAADIDFNVVMRDDLGIIELQGTAEAESLNRNQLNQILDYAEKGITELCQLQRQVLG 238
>gi|171316299|ref|ZP_02905520.1| Polyribonucleotide nucleotidyltransferase [Burkholderia ambifaria
MEX-5]
gi|171098525|gb|EDT43326.1| Polyribonucleotide nucleotidyltransferase [Burkholderia ambifaria
MEX-5]
Length = 714
Score = 163 bits (413), Expect = 2e-38, Method: Composition-based stats.
Identities = 47/242 (19%), Positives = 91/242 (37%), Gaps = 18/242 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHG 57
R+ GR +R I + V GS L G+T L AT +E++ +
Sbjct: 322 RIDGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQALVVATLGTKGDEQIIDALEGEYRE 381
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y M P +TG + + R+ G + RAL + + I + +
Sbjct: 382 RFMLHYNMPPFATGETGRVGSPKRREIGHGRL----AKRALVKCLPSADEFGYSIRVVSE 437
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ G +AL D M+ + +L+G+ A+ +
Sbjct: 438 ITESNGSSSMASVCGGCLALMDAGVPMKAHVAGIAMGLILEGNKFAVLTD---------I 488
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T+ G + +Q + +++ L AK+ ++
Sbjct: 489 LGDEDHLGDMDFKVAGTEQG-VTALQMDIKIQGITKEIMQVALAQAKEGRMHILGKMTSA 547
Query: 238 IS 239
+S
Sbjct: 548 VS 549
Score = 96.8 bits (239), Expect = 2e-18, Method: Composition-based stats.
Identities = 35/233 (15%), Positives = 71/233 (30%), Gaps = 27/233 (11%)
Query: 13 EISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT----KHGWITAEYGMLP 67
++ L V++ A G+ +V DT +L T + + T G +P
Sbjct: 17 KVRLETGEVARQASGAVIVDVEDTVVLATVVGAKSAKPGQDFFPLTVDYLEKTYSAGKIP 76
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R GR R+I R LR + Q++I + +
Sbjct: 77 GGFFRR------EGRPSEHETLTSRLIDRPLRPLFPEGFYNEVQVVIHVLSVNPEIPADI 130
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
A+ GA A G V A + +++ + +
Sbjct: 131 PALIGASAA-------------LAVSGLPFNGPVGAARVAYIDNAYVLNPTRDQLKASSL 177
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
D T+ ++ V+ +E +D + +++ I +++
Sbjct: 178 DLVVAGTER-AVLMVE--SEADQLPEDVMLGAVVFGHEQMQTAIDAIHELVRE 227
>gi|167585967|ref|ZP_02378355.1| polynucleotide phosphorylase/polyadenylase [Burkholderia ubonensis
Bu]
Length = 715
Score = 163 bits (413), Expect = 2e-38, Method: Composition-based stats.
Identities = 47/242 (19%), Positives = 91/242 (37%), Gaps = 18/242 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHG 57
R+ GR +R I + V GS L G+T L AT +E++ +
Sbjct: 322 RIDGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQALVVATLGTKGDEQIIDALEGEYRE 381
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y M P +TG + + R+ G + RAL + + I + +
Sbjct: 382 RFMLHYNMPPFATGETGRVGSPKRREIGHGRL----AKRALVKCLPSADEFGYSIRVVSE 437
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ G +AL D M+ + +L+G+ A+ +
Sbjct: 438 ITESNGSSSMASVCGGCLALMDAGVPMKAHVAGIAMGLILEGNKFAVLTD---------I 488
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T+ G + +Q + +++ L AK+ ++
Sbjct: 489 LGDEDHLGDMDFKVAGTEQG-VTALQMDIKIQGITKEIMQVALAQAKEGRMHILGKMTAA 547
Query: 238 IS 239
+S
Sbjct: 548 VS 549
Score = 93.8 bits (231), Expect = 2e-17, Method: Composition-based stats.
Identities = 37/233 (15%), Positives = 73/233 (31%), Gaps = 27/233 (11%)
Query: 13 EISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT----KHGWITAEYGMLP 67
++ L +++ A G+ +V DT +L T + + T G +P
Sbjct: 17 KVRLETGEIARQASGAVIVDVEDTVVLATVVGAKSAKPGQDFFPLTVDYIEKTYSAGKIP 76
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R GR R+I R LR + Q++I + D
Sbjct: 77 GGFFRR------EGRPSEHETLTSRLIDRPLRPLFPEGFYNEVQVVIHVLSVNPDIPADI 130
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
A+ GA A G V A + +++ + +
Sbjct: 131 PALIGASAA-------------LAVSGLPFNGPVGAARVAYIDNAYVLNPTRDQIKASSL 177
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
D T+ ++ V+ +E S+D + +++ I D++ +
Sbjct: 178 DLVVAGTER-AVLMVE--SEADQLSEDVMLGAVVFGHEQMQIAIDAIHDLVRD 227
>gi|78067050|ref|YP_369819.1| polynucleotide phosphorylase/polyadenylase [Burkholderia sp. 383]
gi|123742554|sp|Q39EE1|PNP_BURS3 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|77967795|gb|ABB09175.1| 3' exoribonuclease [Burkholderia sp. 383]
Length = 715
Score = 163 bits (413), Expect = 2e-38, Method: Composition-based stats.
Identities = 47/242 (19%), Positives = 91/242 (37%), Gaps = 18/242 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHG 57
R+ GR +R I + V GS L G+T L AT +E++ +
Sbjct: 322 RIDGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQALVVATLGTKGDEQIIDALEGEYRE 381
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y M P +TG + + R+ G + RAL + + I + +
Sbjct: 382 RFMLHYNMPPFATGETGRVGSPKRREIGHGRL----AKRALVKCLPSADEFGYSIRVVSE 437
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ G +AL D M+ + +L+G+ A+ +
Sbjct: 438 ITESNGSSSMASVCGGCLALMDAGVPMKAHVAGIAMGLILEGNKFAVLTD---------I 488
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T+ G + +Q + +++ L AK+ ++
Sbjct: 489 LGDEDHLGDMDFKVAGTEQG-VTALQMDIKIQGITKEIMQVALAQAKEGRMHILGKMTSA 547
Query: 238 IS 239
+S
Sbjct: 548 VS 549
Score = 97.2 bits (240), Expect = 2e-18, Method: Composition-based stats.
Identities = 36/233 (15%), Positives = 72/233 (30%), Gaps = 27/233 (11%)
Query: 13 EISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT----KHGWITAEYGMLP 67
++ L V++ A G+ +V DT +L T + + T G +P
Sbjct: 17 KVRLETGEVARQASGAVIVDVEDTVVLATVVGAKSAKPGQDFFPLTVDYLEKTYSAGKIP 76
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R GR R+I R LR + Q++I + +
Sbjct: 77 GGFFRR------EGRPSEHETLTSRLIDRPLRPLFPEGFYNEVQVVIHVLSVNPEIPADI 130
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
A+ GA A G V A + +++ + +
Sbjct: 131 PALIGASAA-------------LAVSGLPFNGPVGAARVAYIDNAYVLNPTRDQIKASSL 177
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
D T+ ++ V+ +E S+D + +++ I +++
Sbjct: 178 DLVVAGTER-AVLMVE--SEADQLSEDVMLGAVVFGHEQMQVAIDAIHELVRE 227
>gi|38234421|ref|NP_940188.1| ribonuclease PH [Corynebacterium diphtheriae NCTC 13129]
gi|61215954|sp|Q6NFN6|RNPH_CORDI RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|38200684|emb|CAE50380.1| Putative ribonuclease PH [Corynebacterium diphtheriae]
Length = 241
Score = 163 bits (413), Expect = 2e-38, Method: Composition-based stats.
Identities = 105/239 (43%), Positives = 147/239 (61%), Gaps = 3/239 (1%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R GR +QMR + +TR + GS LV+FG+T ++ TA++E VP + R++ GW+TA
Sbjct: 6 RADGRAVDQMRTVKITRGFTSNPAGSVLVEFGNTRVMCTASVELGVPRFKRDSGEGWLTA 65
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
EY MLP +T R RE++ G+ GR+ EI R+IGR+LR+ VDL LG I IDCDV+QA
Sbjct: 66 EYAMLPAATAERNARESMRGKVKGRTHEISRLIGRSLRAAVDLDELGENTINIDCDVLQA 125
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
DGGTRTA+ITGA+VAL D + +++ LK VAA+S G++ G +DL Y E
Sbjct: 126 DGGTRTASITGAYVALADAIAVLKE--QGVVPGNPLKAAVAAVSVGVIDGQVCLDLPYEE 183
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
DS DVD N +M VE+QG+ E TF +D +L+ A+ +L QK +
Sbjct: 184 DSRADVDMNVIMQGD-RFVEIQGTGEHNTFDRDELAVILDFAQKGCQELFAAQKAALEQ 241
>gi|255264847|ref|ZP_05344189.1| polyribonucleotide nucleotidyltransferase [Thalassiobium sp. R2A62]
gi|255107182|gb|EET49856.1| polyribonucleotide nucleotidyltransferase [Thalassiobium sp. R2A62]
Length = 711
Score = 163 bits (412), Expect = 2e-38, Method: Composition-based stats.
Identities = 48/243 (19%), Positives = 96/243 (39%), Gaps = 17/243 (6%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR+ +++R+I + GS L G+T L ATL +E++ ++
Sbjct: 318 RIDGRKTDEVRDIVCETGLLPRTHGSALFTRGETQGLVVATLGTGDDEQMIDALQGMYRS 377
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + R+ G + RAL++V+ + I + +
Sbjct: 378 NFMLHYNFPPYSVGEVGRFGPPGRREIGHGKL----AWRALQAVLPAATDFPYTIRLVSE 433
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ G +++ D ++ + VL+ + D+
Sbjct: 434 ITESNGSSSMASVCGGSLSMMDAGVPLKAPVAGVAMGLVLEDD--------GDYAILTDI 485
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T++G I +Q + A + D L AK+ ++
Sbjct: 486 LGDEDHLGDMDFKVAGTEAG-ITSLQMDIKVAGITPDIMEKALAQAKEGRLHILGEMNKS 544
Query: 238 ISN 240
IS+
Sbjct: 545 ISS 547
Score = 105 bits (261), Expect = 6e-21, Method: Composition-based stats.
Identities = 33/235 (14%), Positives = 68/235 (28%), Gaps = 26/235 (11%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGN 72
++L V++ A+GS + +G+T ++ T +K E
Sbjct: 16 LTLETGKVARQADGSVIATYGETSVMANVTFAKKQKPGQDFFPLTVHYNEKYYAAGKVP- 74
Query: 73 RVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITG 132
R + R+I R +R + +I A+
Sbjct: 75 -GGFFKREARPTEKETLTSRLIDRPIRPLFVPGFKNEVLVICTVLSHDLVNDPDMVAMIA 133
Query: 133 AWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDST------ID 186
A A G ++A G G I++ + +
Sbjct: 134 ASAA-------------LTISGAPFMGPISACRVGFEDGEYILNPELDDMHDLRNKPEQR 180
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
+D T ++ V+ A +++ + A ++I I L ++ E
Sbjct: 181 LDLVVAGTKD-AVMMVESEAYE--LTEEEMLGAVKFAHEQIQTPIDLI-IALAEE 231
>gi|162147173|ref|YP_001601634.1| ribonuclease PH [Gluconacetobacter diazotrophicus PAl 5]
gi|161785750|emb|CAP55321.1| putative Ribonuclease PH [Gluconacetobacter diazotrophicus PAl 5]
Length = 275
Score = 163 bits (412), Expect = 2e-38, Method: Composition-based stats.
Identities = 117/237 (49%), Positives = 156/237 (65%), Gaps = 2/237 (0%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R SGR + +R IS+ + +AEGS L++ G T +L AT+E +VP ++R GW+TA
Sbjct: 31 RPSGRAPDALRAISIEPGFAHHAEGSALIRMGGTEVLCAATVESRVPPFLRGQGKGWVTA 90
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
EYGMLPR+T R REA G+Q GR+QEIQR+IGR+LR+VVDL ALG I +DCDV+ A
Sbjct: 91 EYGMLPRATHTRGGREAAKGKQSGRTQEIQRLIGRSLRAVVDLEALGEMSITVDCDVLNA 150
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
DGGTR A+ITGAWVAL L+ + + L VAA+SCG+ ++DLDY E
Sbjct: 151 DGGTRCASITGAWVALRLALETLVRN--RVLARLPLTAQVAAVSCGLTGAGAVLDLDYDE 208
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
DS DANFV+T++G IVE+Q +AE A F+QD F +L LA+ A L Q+ +
Sbjct: 209 DSAAAADANFVLTETGGIVEIQATAEHAPFAQDQFDTLLRLARTGTAQLFIAQRQAV 265
>gi|56460072|ref|YP_155353.1| polynucleotide phosphorylase/polyadenylase [Idiomarina loihiensis
L2TR]
gi|81363045|sp|Q5QYE1|PNP_IDILO RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|56179082|gb|AAV81804.1| Polynucleotide phosphorylase [Idiomarina loihiensis L2TR]
Length = 716
Score = 163 bits (412), Expect = 2e-38, Method: Composition-based stats.
Identities = 46/244 (18%), Positives = 89/244 (36%), Gaps = 18/244 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR + +R IS+ V GS L G+T L TATL + ++ +
Sbjct: 314 RIDGRDPDMVRAISVATGVLPRTHGSALFTRGETQALVTATLGTDRDAQMIDELTGMNTN 373
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P G + R+ G + R +++V+ I + +
Sbjct: 374 RFMLHYNFPPYCVGETGMVGSPKRREIGHGRL----AKRGIQAVMPSHDEFPYTIRVVSE 429
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ G+ +AL D ++ + V +G + +
Sbjct: 430 ITESNGSSSMASVCGSSLALMDAGVPIKSSVAGIAMGLVKEGDKHVVLSD---------I 480
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D G I +Q + ++D + L AK ++K+ +
Sbjct: 481 LGDEDHLGDMDFKVAGNTDG-ITALQMDIKIDGITRDIMESALAQAKSARLHILKVMDEA 539
Query: 238 ISNE 241
I
Sbjct: 540 IGGH 543
Score = 95.7 bits (236), Expect = 5e-18, Method: Composition-based stats.
Identities = 36/232 (15%), Positives = 73/232 (31%), Gaps = 27/232 (11%)
Query: 14 ISLTRRV-SKYAEGSCLVKFGDTHLLTTATLEEKVP----MWIRNTKHGWITAEYGMLPR 68
++L V ++ A S L DT +L T +++ + + T G +P
Sbjct: 15 VTLETGVIARQATASVLASIDDTTVLVTVVAKKEAREGQNFFPLTVNYQEKTYAAGKIPG 74
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
R GR R+I R +R + + Q++ +
Sbjct: 75 GFFKR------EGRPSENETLTCRLIDRPIRPLFPDGFMNEVQVVATVVSVNPQINPDIV 128
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+ G A G + A G++ +++ E +D
Sbjct: 129 ALIGTSAA-------------LSISGVPFAGPIGAARVGVVNDEYVLNPTADELENSKLD 175
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
T ++ V+ +E S+D + + + D+IK + +
Sbjct: 176 LVVAGT-DKAVLMVE--SEAQLLSEDQMLGAVMYGHEAMQDVIKAITEFTAE 224
>gi|309378698|emb|CBX22648.1| unnamed protein product [Neisseria lactamica Y92-1009]
Length = 242
Score = 163 bits (412), Expect = 2e-38, Method: Composition-based stats.
Identities = 117/239 (48%), Positives = 170/239 (71%), Gaps = 3/239 (1%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+R S R + +R+I +T R + +GSCL++ G+T ++ TA+++E VP ++R GW+T
Sbjct: 5 IRTS-RAADSLRDIKITPRFLPHTDGSCLIECGNTKVICTASVDENVPPFLRGKNQGWVT 63
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLP ST +R++REA +G+Q GR+QEIQR+IGR+LR+VVD+ LG RQI+IDCDVIQ
Sbjct: 64 AEYGMLPASTASRMRREASAGKQSGRTQEIQRLIGRSLRAVVDMEKLGERQILIDCDVIQ 123
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+ITGA+VALH + + ++ VAA+S G++ G P++DLDY
Sbjct: 124 ADGGTRTASITGAFVALHIAVGKLVSD--GILTENPIREAVAAVSAGVVGGVPLLDLDYP 181
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
EDS D D N VMT SG I+E+QG+AE A FS + ++ LA+ I +L++ Q++ +S
Sbjct: 182 EDSGCDSDVNIVMTTSGKIIEIQGTAEGAPFSLEELGKLIGLAEKGIGELLRYQQNALS 240
>gi|163855920|ref|YP_001630218.1| polynucleotide phosphorylase/polyadenylase [Bordetella petrii DSM
12804]
gi|226702623|sp|A9IGJ9|PNP_BORPD RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|163259648|emb|CAP41949.1| polyribonucleotide nucleotidyltransferase [Bordetella petrii]
Length = 719
Score = 163 bits (412), Expect = 2e-38, Method: Composition-based stats.
Identities = 47/242 (19%), Positives = 92/242 (38%), Gaps = 18/242 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +R I + V A GS L G+T L ATL +E++ +
Sbjct: 320 RIDGRDTRTVRPIEIRLGVLPRAHGSALFTRGETQALVVATLGTKQDEQIIDALMGEYRD 379
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y M P +TG + R+ G + RAL S++ I + +
Sbjct: 380 RFMLHYNMPPFATGETGRIGVPKRREIGHGRL----AKRALVSLLPAHEDFQYTIRLVSE 435
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ G +A+ D ++D + +L A+ +
Sbjct: 436 ITESNGSSSMASVCGGSLAMMDAGVPLQDHVAGVAMGLILDDGKFAVLTD---------I 486
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T +G I +Q + +++ L A++ ++ ++
Sbjct: 487 LGDEDHLGDMDFKVAGTQNG-ITALQMDIKIQGITKEIMQVALAQAREGRLHILGKMREA 545
Query: 238 IS 239
+
Sbjct: 546 LE 547
Score = 95.3 bits (235), Expect = 7e-18, Method: Composition-based stats.
Identities = 38/233 (16%), Positives = 78/233 (33%), Gaps = 31/233 (13%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPM----WIRNTKHGWITAEYGMLPR 68
+ L +++ A G+ LV DT +L T +K + + T G +P
Sbjct: 16 VVLETGEIARQASGAVLVSVDDTVVLATVVAAKKAKPGQTFFPLTVDYIEKTYAAGRIPG 75
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
R G+ + R+I R LR + Q+++ + +
Sbjct: 76 GFFKR------EGKPSEKETLTSRLIDRPLRPLFPEGFYNEVQVVLHTVSVNPEIDPDIP 129
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+ GA A G + A G + G +++ + + +D
Sbjct: 130 AMIGASAA-------------LAISGIPFNGPIGAARVGYVDGQYVLNPTATQLKSSQMD 176
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKD----RIADLIKLQKDV 237
T++ ++ V+ A++ S+D + + I + L +D
Sbjct: 177 LVVAGTEN-AVLMVESEAKQ--LSEDVMLGGVVYGHEQMQAAINAIHDLVRDA 226
>gi|126172622|ref|YP_001048771.1| ribonuclease PH [Shewanella baltica OS155]
gi|152998920|ref|YP_001364601.1| ribonuclease PH [Shewanella baltica OS185]
gi|160873506|ref|YP_001552822.1| ribonuclease PH [Shewanella baltica OS195]
gi|217971601|ref|YP_002356352.1| ribonuclease PH [Shewanella baltica OS223]
gi|304411675|ref|ZP_07393287.1| ribonuclease PH [Shewanella baltica OS183]
gi|307306273|ref|ZP_07586018.1| ribonuclease PH [Shewanella baltica BA175]
gi|166228316|sp|A3CZI9|RNPH_SHEB5 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|166228317|sp|A6WI99|RNPH_SHEB8 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|189043774|sp|A9KXZ7|RNPH_SHEB9 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|254808600|sp|B8E4I8|RNPH_SHEB2 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|125995827|gb|ABN59902.1| RNAse PH [Shewanella baltica OS155]
gi|151363538|gb|ABS06538.1| ribonuclease PH [Shewanella baltica OS185]
gi|160859028|gb|ABX47562.1| ribonuclease PH [Shewanella baltica OS195]
gi|217496736|gb|ACK44929.1| ribonuclease PH [Shewanella baltica OS223]
gi|304349863|gb|EFM14269.1| ribonuclease PH [Shewanella baltica OS183]
gi|306911146|gb|EFN41573.1| ribonuclease PH [Shewanella baltica BA175]
gi|315265735|gb|ADT92588.1| ribonuclease PH [Shewanella baltica OS678]
Length = 237
Score = 163 bits (412), Expect = 2e-38, Method: Composition-based stats.
Identities = 122/239 (51%), Positives = 163/239 (68%), Gaps = 2/239 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR S R Q R I++TR+ + +AEGS LV+FG+T +L TA+ E VP +++ GW+T
Sbjct: 1 MRPSNRTPAQTRPITITRQFTAHAEGSVLVEFGETKVLCTASFTEGVPRFLKGQGQGWVT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPRST +R+ REA G+Q GR+QEIQR+IGRALR+ VD+ ALG I+IDCDVIQ
Sbjct: 61 AEYGMLPRSTHSRMDREAARGKQSGRTQEIQRLIGRALRACVDMKALGENTIVIDCDVIQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+ITGA VAL D L S LK +AA+S G+ G I DL+Y
Sbjct: 121 ADGGTRTASITGACVALVDALNW--ARGKGIIKSNPLKFLIAAVSVGIYKGEAISDLEYI 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
EDS + D N VMT++G I+E+QG+AE FS + +L LAK+ I +++ +QK ++
Sbjct: 179 EDSAAETDMNVVMTETGKIIEIQGTAEGEPFSHEELLELLALAKNSIREIVDVQKAALN 237
>gi|163797073|ref|ZP_02191028.1| molecular chaperone DnaK [alpha proteobacterium BAL199]
gi|159177589|gb|EDP62142.1| molecular chaperone DnaK [alpha proteobacterium BAL199]
Length = 243
Score = 163 bits (412), Expect = 2e-38, Method: Composition-based stats.
Identities = 131/238 (55%), Positives = 168/238 (70%), Gaps = 2/238 (0%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R SGR + +RE+ L +K+AEGSCLV+FGDTH+L TA++E++VP W++ GW+TA
Sbjct: 8 RPSGRAVDALREVRLEPGFAKHAEGSCLVRFGDTHVLCTASVEDRVPPWLKGGGKGWVTA 67
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
EYGMLPRST R REA G+Q GR+QEIQR+IGR+LRSV DL ALG RQI +DCDVIQA
Sbjct: 68 EYGMLPRSTHTRTDREAARGKQSGRTQEIQRLIGRSLRSVTDLVALGERQIRVDCDVIQA 127
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
DGGTRTAAITG+WVALH + + S L VAAISCG+ G P++DLDY E
Sbjct: 128 DGGTRTAAITGSWVALHQAMSTL--LRFGAVKSLPLTDKVAAISCGIYKGQPVLDLDYAE 185
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
DS + DANFV+T G IVE+Q +AE F + F +L LA+ I +L LQ++ ++
Sbjct: 186 DSNCETDANFVLTGRGGIVEIQATAEAEPFEEAAFHELLRLARKGIGELAVLQEEAVA 243
>gi|118580726|ref|YP_901976.1| ribonuclease PH [Pelobacter propionicus DSM 2379]
gi|118503436|gb|ABK99918.1| RNAse PH [Pelobacter propionicus DSM 2379]
Length = 239
Score = 163 bits (412), Expect = 2e-38, Method: Composition-based stats.
Identities = 120/239 (50%), Positives = 165/239 (69%), Gaps = 2/239 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+R +GR +R +++TR +KYAEG+ LV+FGDT ++ TA++EE VP ++R GW+T
Sbjct: 2 VRKNGRDSRALRPVAITRNFTKYAEGAVLVEFGDTRVICTASVEESVPSFLRGRGTGWVT 61
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEY MLPR+T R REA G+Q GR+ EIQR+IGR+LR+V DL+ALG R + +DCDV+Q
Sbjct: 62 AEYSMLPRATHTRSSREASKGKQSGRTLEIQRLIGRSLRAVTDLAALGERSVYLDCDVLQ 121
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+ITGA+VAL D L ++ L+ VAA+S G++ G ++DLDY
Sbjct: 122 ADGGTRTASITGAYVALADALATLK--QRGLLERIPLREAVAAVSVGIVGGESLLDLDYD 179
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
EDS+ +VD NFVMT S VEVQG+AE F+ + AM +LA D I L LQ++ +
Sbjct: 180 EDSSAEVDMNFVMTSSQRFVEVQGTAEVEPFTLEQMDAMRSLAMDGIQCLFDLQREALK 238
>gi|300087418|ref|YP_003757940.1| ribonuclease PH [Dehalogenimonas lykanthroporepellens BL-DC-9]
gi|299527151|gb|ADJ25619.1| ribonuclease PH [Dehalogenimonas lykanthroporepellens BL-DC-9]
Length = 240
Score = 163 bits (412), Expect = 2e-38, Method: Composition-based stats.
Identities = 107/238 (44%), Positives = 153/238 (64%), Gaps = 2/238 (0%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R+ GR N MR +++T +A+GS L++ G T ++ + ++EE+VP ++RN+ GW+TA
Sbjct: 3 RIDGRAANAMRPVTITPGFQAFADGSVLIEQGKTRVICSVSMEERVPAFLRNSGTGWVTA 62
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
EY MLPR+T +R RE+V G+ GRSQEIQR+IGR+LR+V DLSALG R ++DCDVIQA
Sbjct: 63 EYAMLPRATTSRTPRESVKGKVSGRSQEIQRLIGRSLRAVTDLSALGERSFVVDCDVIQA 122
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
D GTRTAAITG +VAL+ L + L+ VAAIS M ++D Y E
Sbjct: 123 DAGTRTAAITGGYVALYLALNKL--FRLGVFKEMPLRAQVAAISVVMRQNNLLLDPVYEE 180
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
D D D N VM G +E+QG+AE+ F ++ A+L LA+ I L ++Q+ ++
Sbjct: 181 DCGADADFNLVMNSKGEFLEIQGTAEQRPFKRNTLDAVLGLAEKGIGQLFEIQQTTLA 238
>gi|170698105|ref|ZP_02889185.1| Polyribonucleotide nucleotidyltransferase [Burkholderia ambifaria
IOP40-10]
gi|170136963|gb|EDT05211.1| Polyribonucleotide nucleotidyltransferase [Burkholderia ambifaria
IOP40-10]
Length = 714
Score = 163 bits (412), Expect = 2e-38, Method: Composition-based stats.
Identities = 47/242 (19%), Positives = 91/242 (37%), Gaps = 18/242 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHG 57
R+ GR +R I + V GS L G+T L AT +E++ +
Sbjct: 322 RIDGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQALVVATLGTKGDEQIIDALEGEYRE 381
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y M P +TG + + R+ G + RAL + + I + +
Sbjct: 382 RFMLHYNMPPFATGETGRVGSPKRREIGHGRL----AKRALVKCLPSADEFGYSIRVVSE 437
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ G +AL D M+ + +L+G+ A+ +
Sbjct: 438 ITESNGSSSMASVCGGCLALMDAGVPMKAHVAGIAMGLILEGNKFAVLTD---------I 488
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T+ G + +Q + +++ L AK+ ++
Sbjct: 489 LGDEDHLGDMDFKVAGTEQG-VTALQMDIKIQGITKEIMQVALAQAKEGRMHILGKMTSA 547
Query: 238 IS 239
+S
Sbjct: 548 VS 549
Score = 96.8 bits (239), Expect = 2e-18, Method: Composition-based stats.
Identities = 35/233 (15%), Positives = 71/233 (30%), Gaps = 27/233 (11%)
Query: 13 EISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT----KHGWITAEYGMLP 67
++ L V++ A G+ +V DT +L T + + T G +P
Sbjct: 17 KVRLETGEVARQASGAVIVDVEDTVVLATVVGAKSAKPGQDFFPLTVDYLEKTYSAGKIP 76
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R GR R+I R LR + Q++I + +
Sbjct: 77 GGFFRR------EGRPSEHETLTSRLIDRPLRPLFPEGFYNEVQVVIHVLSVNPEIPADI 130
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
A+ GA A G V A + +++ + +
Sbjct: 131 PALIGASAA-------------LAVSGLPFNGPVGAARVAYIDNAYVLNPTRDQLKASSL 177
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
D T+ ++ V+ +E +D + +++ I +++
Sbjct: 178 DLVVAGTER-AVLMVE--SEADQLPEDVMLGAVVFGHEQMQTAIDAIHELVRE 227
>gi|186476768|ref|YP_001858238.1| polynucleotide phosphorylase/polyadenylase [Burkholderia phymatum
STM815]
gi|226702629|sp|B2JDN2|PNP_BURP8 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|184193227|gb|ACC71192.1| Polyribonucleotide nucleotidyltransferase [Burkholderia phymatum
STM815]
Length = 712
Score = 163 bits (412), Expect = 2e-38, Method: Composition-based stats.
Identities = 47/242 (19%), Positives = 91/242 (37%), Gaps = 18/242 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHG 57
R+ GR +R I + V GS L G+T L AT +E++ +
Sbjct: 322 RIDGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQALVVATLGTKGDEQIIDALEGEYRD 381
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y M P +TG + + R+ G + RAL + + + I + +
Sbjct: 382 RFMLHYNMPPFATGETGRVGSPKRREIGHGRL----AKRALAACLPSAEEFGYSIRVVSE 437
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ G +AL D M+ + +L+G+ A+ +
Sbjct: 438 ITESNGSSSMASVCGGCLALMDAGVPMKAHVAGIAMGLILEGNKFAVLTD---------I 488
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T G + +Q + +++ L AK+ ++
Sbjct: 489 LGDEDHLGDMDFKVAGTADG-VTALQMDIKIQGITKEIMQVALAQAKEGRMHILGKMTSA 547
Query: 238 IS 239
+S
Sbjct: 548 VS 549
Score = 96.1 bits (237), Expect = 4e-18, Method: Composition-based stats.
Identities = 36/232 (15%), Positives = 71/232 (30%), Gaps = 27/232 (11%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT----KHGWITAEYGMLPR 68
+ + +++ A G+ LV DT +L T + + T G +P
Sbjct: 18 VRMETGEIARQASGAVLVDVEDTVVLATVVGAKTAKPGQDFFPLTVDYIEKTYSAGKIPG 77
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
R GR I R+I R LR + Q++I I +
Sbjct: 78 GFFRR------EGRPSEGETLISRLIDRPLRPLFPEGFYNEVQVVIHVMSINPEVPADIP 131
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+ GA A G V A + +++ + +D
Sbjct: 132 ALIGASAA-------------LAVSGLPFNGPVGAARVAYINNEYVLNPTRSQIKGSRLD 178
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
T+ ++ V+ +E +D + +++ I +++
Sbjct: 179 LVVAGTER-AVLMVE--SEADQLPEDVMLGAVVFGHEQMQTAIDAIHELVRE 227
>gi|115352342|ref|YP_774181.1| polynucleotide phosphorylase/polyadenylase [Burkholderia ambifaria
AMMD]
gi|172061213|ref|YP_001808865.1| polynucleotide phosphorylase/polyadenylase [Burkholderia ambifaria
MC40-6]
gi|122322637|sp|Q0BDC6|PNP_BURCM RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|226702626|sp|B1YTR1|PNP_BURA4 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|115282330|gb|ABI87847.1| 3' exoribonuclease [Burkholderia ambifaria AMMD]
gi|171993730|gb|ACB64649.1| Polyribonucleotide nucleotidyltransferase [Burkholderia ambifaria
MC40-6]
Length = 714
Score = 163 bits (412), Expect = 2e-38, Method: Composition-based stats.
Identities = 47/242 (19%), Positives = 91/242 (37%), Gaps = 18/242 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHG 57
R+ GR +R I + V GS L G+T L AT +E++ +
Sbjct: 322 RIDGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQALVVATLGTKGDEQIIDALEGEYRE 381
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y M P +TG + + R+ G + RAL + + I + +
Sbjct: 382 RFMLHYNMPPFATGETGRVGSPKRREIGHGRL----AKRALVKCLPSADEFGYSIRVVSE 437
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ G +AL D M+ + +L+G+ A+ +
Sbjct: 438 ITESNGSSSMASVCGGCLALMDAGVPMKAHVAGIAMGLILEGNKFAVLTD---------I 488
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T+ G + +Q + +++ L AK+ ++
Sbjct: 489 LGDEDHLGDMDFKVAGTEQG-VTALQMDIKIQGITKEIMQVALAQAKEGRMHILGKMTSA 547
Query: 238 IS 239
+S
Sbjct: 548 VS 549
Score = 96.8 bits (239), Expect = 2e-18, Method: Composition-based stats.
Identities = 35/233 (15%), Positives = 71/233 (30%), Gaps = 27/233 (11%)
Query: 13 EISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT----KHGWITAEYGMLP 67
++ L V++ A G+ +V DT +L T + + T G +P
Sbjct: 17 KVRLETGEVARQASGAVIVDVEDTVVLATVVGAKSAKPGQDFFPLTVDYLEKTYSAGKIP 76
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R GR R+I R LR + Q++I + +
Sbjct: 77 GGFFRR------EGRPSEHETLTSRLIDRPLRPLFPEGFYNEVQVVIHVLSVNPEIPADI 130
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
A+ GA A G V A + +++ + +
Sbjct: 131 PALIGASAA-------------LAVSGLPFNGPVGAARVAYIDNAYVLNPTRDQLKASSL 177
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
D T+ ++ V+ +E +D + +++ I +++
Sbjct: 178 DLVVAGTER-AVLMVE--SEADQLPEDVMLGAVVFGHEQMQTAIDAIHELVRE 227
>gi|311277436|ref|YP_003939667.1| ribonuclease PH [Enterobacter cloacae SCF1]
gi|308746631|gb|ADO46383.1| ribonuclease PH [Enterobacter cloacae SCF1]
Length = 238
Score = 163 bits (412), Expect = 2e-38, Method: Composition-based stats.
Identities = 122/240 (50%), Positives = 163/240 (67%), Gaps = 2/240 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR +GR +Q+R ++LTR +K+AEGS LV+FGDT +L TA++EE VP +++ GWIT
Sbjct: 1 MRPAGRSAHQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWIT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPR+T R REA G+QGGR+ EIQR+I RALR+ VDL LG I +DCDVIQ
Sbjct: 61 AEYGMLPRATHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKTLGEFTITLDCDVIQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+ITGA VAL D L ++ + +KG VAA+S G++ G + DL+Y
Sbjct: 121 ADGGTRTASITGACVALADALNNLVAA--GKLKTNPMKGMVAAVSVGIVDGEALCDLEYV 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
EDS + D N VMT+ G I+EVQG+AE F+ + +L LA+ I ++ QK + N
Sbjct: 179 EDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLTLLALARGGIESIVATQKAALEN 238
>gi|238794526|ref|ZP_04638134.1| Ribonuclease PH [Yersinia intermedia ATCC 29909]
gi|238726106|gb|EEQ17652.1| Ribonuclease PH [Yersinia intermedia ATCC 29909]
Length = 238
Score = 163 bits (412), Expect = 2e-38, Method: Composition-based stats.
Identities = 119/240 (49%), Positives = 162/240 (67%), Gaps = 2/240 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR + R Q+R ++LTR +K+AEGS LV+FGDT +L TAT+EE VP +++ GWIT
Sbjct: 1 MRPADRAAQQVRPLTLTRNYTKHAEGSVLVEFGDTKVLCTATVEEGVPRFLKGQGQGWIT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPR+T +R REA G+QGGR+ EIQR+I R+LR+ VDL LG I +DCDV+Q
Sbjct: 61 AEYGMLPRATHSRNAREAAKGKQGGRTLEIQRLIARSLRAAVDLKKLGEFTITLDCDVLQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+I+GA VAL D L + + +KG VAA+S G++ G + DL+Y
Sbjct: 121 ADGGTRTASISGACVALADALNKLVAA--GKLKANPMKGLVAAVSVGIVKGEALCDLEYV 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
EDS + D N VM + G ++EVQG+AE FS + A+L LA+ I + + QK V++
Sbjct: 179 EDSAAETDMNVVMMEDGRMIEVQGTAEGEPFSHEELLALLALARGGIETIFQAQKAVLAQ 238
>gi|148656132|ref|YP_001276337.1| ribonuclease PH [Roseiflexus sp. RS-1]
gi|148568242|gb|ABQ90387.1| RNAse PH [Roseiflexus sp. RS-1]
Length = 245
Score = 163 bits (412), Expect = 2e-38, Method: Composition-based stats.
Identities = 109/239 (45%), Positives = 150/239 (62%), Gaps = 4/239 (1%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+R GR +R + +T YAEGS L++ G+T +L TA++EE VP W+R + GW+T
Sbjct: 2 VRNDGRAPADLRPVRITIDTYGYAEGSALIEMGNTRVLCTASVEEGVPQWLRGQQRGWVT 61
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
EY +LPRST R +R GR+QEIQR+IGRALR+ V L AL + +DCDV+Q
Sbjct: 62 GEYALLPRSTAQRTRR--ERNGVSGRTQEIQRLIGRALRAAVSLEALDGFTVTVDCDVLQ 119
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+ITG +VAL L + S L+ VAA+S G + G ++DLDY
Sbjct: 120 ADGGTRTASITGGYVAL--ALALHRLTAEGRLASNPLQRAVAAVSAGYVAGCALLDLDYS 177
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
EDS D+D N V+TD G IVEVQ +AE S+ F A+++LA D I L+ +Q+ ++
Sbjct: 178 EDSVADMDCNLVLTDDGAIVEVQSTAEARAVSRAEFDALIDLATDGIRRLLAIQRAALA 236
>gi|107023192|ref|YP_621519.1| polynucleotide phosphorylase/polyadenylase [Burkholderia
cenocepacia AU 1054]
gi|116690274|ref|YP_835897.1| polynucleotide phosphorylase/polyadenylase [Burkholderia
cenocepacia HI2424]
gi|123244852|sp|Q1BV09|PNP_BURCA RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|187470943|sp|A0K927|PNP_BURCH RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|105893381|gb|ABF76546.1| 3' exoribonuclease [Burkholderia cenocepacia AU 1054]
gi|116648363|gb|ABK09004.1| 3' exoribonuclease [Burkholderia cenocepacia HI2424]
Length = 715
Score = 163 bits (412), Expect = 2e-38, Method: Composition-based stats.
Identities = 47/242 (19%), Positives = 91/242 (37%), Gaps = 18/242 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHG 57
R+ GR +R I + V GS L G+T L AT +E++ +
Sbjct: 322 RIDGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQALVVATLGTKGDEQIIDALEGEYRE 381
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y M P +TG + + R+ G + RAL + + I + +
Sbjct: 382 RFMLHYNMPPFATGETGRVGSPKRREIGHGRL----AKRALVKCLPSADEFGYSIRVVSE 437
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ G +AL D M+ + +L+G+ A+ +
Sbjct: 438 ITESNGSSSMASVCGGCLALMDAGVPMKAHVAGIAMGLILEGNKFAVLTD---------I 488
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T+ G + +Q + +++ L AK+ ++
Sbjct: 489 LGDEDHLGDMDFKVAGTEQG-VTALQMDIKIQGITKEIMQVALAQAKEGRLHILGKMTSA 547
Query: 238 IS 239
+S
Sbjct: 548 VS 549
Score = 95.7 bits (236), Expect = 5e-18, Method: Composition-based stats.
Identities = 35/233 (15%), Positives = 73/233 (31%), Gaps = 27/233 (11%)
Query: 13 EISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT----KHGWITAEYGMLP 67
++ L V++ A G+ +V DT +L T + + T G +P
Sbjct: 17 KVRLETGEVARQASGAVIVDVEDTVVLATVVGAKSAKPGQDFFPLTVDYLEKTYSAGKIP 76
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R GR R+I R LR + Q++I + +
Sbjct: 77 GGFFRR------EGRPSEHETLTSRLIDRPLRPLFPEGFYNEVQVVIHVLSVNPEIPADI 130
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
A+ GA A G V A + +++ + +
Sbjct: 131 PALIGASAA-------------LAVSGLPFNGPVGAARVAYIDNAYVLNPTRDQLKASSL 177
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
D T+ ++ V+ +E S++ + +++ I +++ +
Sbjct: 178 DLVVAGTER-AVLMVE--SEADQLSEEVMLGAVVFGHEQMQIAIDAIHELVRD 227
>gi|325294385|ref|YP_004280899.1| polyribonucleotide nucleotidyltransferase [Desulfurobacterium
thermolithotrophum DSM 11699]
gi|325064833|gb|ADY72840.1| Polyribonucleotide nucleotidyltransferase [Desulfurobacterium
thermolithotrophum DSM 11699]
Length = 712
Score = 163 bits (412), Expect = 2e-38, Method: Composition-based stats.
Identities = 48/244 (19%), Positives = 89/244 (36%), Gaps = 18/244 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
+R+ GR+ N++R I++ + GS L G T L T TL E ++ + +
Sbjct: 311 IRIDGRKPNEIRPITIEVGLLPRVHGSALFTRGQTQALVTTTLGTPEEYQLVEGLMPEEQ 370
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P G R+ G RAL V+ I +
Sbjct: 371 KRFMLHYNFPPFCVGEVAPLRGPGRREIGHGAL----AERALAPVIPEEDEFPYVIRVVS 426
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
D+++++G + A + G ++L D ++ + +L+G +
Sbjct: 427 DILESNGSSSMATVCGGSLSLMDAGVPIKAQVAGIAMGLILEGDKFVVLSD--------- 477
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T G + +Q + S+D L A++ ++
Sbjct: 478 ILGDEDHLGDMDFKVAGTRKG-VTAIQMDLKVKGISRDILMTALKQAREGRMYILDKMDA 536
Query: 237 VISN 240
VIS+
Sbjct: 537 VISS 540
Score = 116 bits (291), Expect = 2e-24, Method: Composition-based stats.
Identities = 43/230 (18%), Positives = 85/230 (36%), Gaps = 27/230 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEK----VPMWIRNTKHGWITAEYGML 66
R + ++K A+G+ +V GDT +L TA + ++ + + ++ G +
Sbjct: 13 RPLRFQTGKLAKQADGAVIVSQGDTMVLVTAVMSDEPREGIDFFPLLVEYRERAYAAGKI 72
Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
P R G+ R+I R++R + Q++ +
Sbjct: 73 PGGFVKR------EGKPTDEEVLKSRVIDRSIRPIFPKGFRNDVQVVAFVISADQENDPA 126
Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
AI GA ALH + V A+ + G +V+ Y + D
Sbjct: 127 VLAINGASAALH-------------ISRIPFEKPVGAVRVVRVNGKLVVNPSYEQQQNAD 173
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
++ T+ +V V+G A+ ++ + LA + I I+ Q++
Sbjct: 174 INLVVSGTED-AVVMVEGGAKEVP--EEEILDAIELAHEEIKKSIRAQQE 220
>gi|312796906|ref|YP_004029828.1| Polyribonucleotide nucleotidyltransferase / Polynucleotide
adenylyltransferase [Burkholderia rhizoxinica HKI 454]
gi|312168681|emb|CBW75684.1| Polyribonucleotide nucleotidyltransferase (EC 2.7.7.8) /
Polynucleotide adenylyltransferase (EC 2.7.7.19)
[Burkholderia rhizoxinica HKI 454]
Length = 768
Score = 163 bits (412), Expect = 2e-38, Method: Composition-based stats.
Identities = 46/241 (19%), Positives = 89/241 (36%), Gaps = 18/241 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHG 57
R+ GR +R I + V A GS L G+T L AT +E++ I
Sbjct: 366 RIDGRDTRTVRPIEIRTGVLPRAHGSALFTRGETQALVVATLGTKGDEQIIDAIEGEYRE 425
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y M P +TG + + R+ G + R+L + I + +
Sbjct: 426 RFMLHYNMPPFATGETGRVGSPKRREIGHGRL----AKRSLVPCLPGDDEFGYTIRVVSE 481
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ G +AL D M+ + +L+G+ A+ +
Sbjct: 482 ITESNGSSSMASVCGGCLALMDAGVPMKAHVAGIAMGLILEGNKFAVLTD---------I 532
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T G + +Q + +++ L A++ ++
Sbjct: 533 LGDEDHLGDMDFKVAGTAQG-VTALQMDIKIQGITKEIMQVALAQAREGRLHILDKMTSA 591
Query: 238 I 238
+
Sbjct: 592 V 592
Score = 92.6 bits (228), Expect = 4e-17, Method: Composition-based stats.
Identities = 36/233 (15%), Positives = 71/233 (30%), Gaps = 27/233 (11%)
Query: 13 EISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT----KHGWITAEYGMLP 67
+ L +++ A G+ +V DT +L T + + T G +P
Sbjct: 61 NVRLETGEIARQASGAVIVDVEDTVVLATVVAAKSAKPGQDFFPLTVDYIEKTYAAGKIP 120
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R GR I R+I R LR + Q++I I D
Sbjct: 121 GGFFRR------EGRPSEGETLISRLIDRPLRPLFPEGFYNEVQVVIHVLSINPDIPADI 174
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
A+ GA A G + A + +++ + +
Sbjct: 175 PAMIGASAA-------------LAISGIPFNGPIGAARVAYIDNQFVLNPTRSQSKASKL 221
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
D T+ ++ V+ +E ++ + +++ I D++
Sbjct: 222 DLVVAGTER-AVLMVE--SEADQLPEEVMLGAVVFGHEQMQVAIDAIHDLVKE 271
>gi|209544228|ref|YP_002276457.1| ribonuclease PH [Gluconacetobacter diazotrophicus PAl 5]
gi|209531905|gb|ACI51842.1| ribonuclease PH [Gluconacetobacter diazotrophicus PAl 5]
Length = 248
Score = 163 bits (411), Expect = 2e-38, Method: Composition-based stats.
Identities = 117/237 (49%), Positives = 156/237 (65%), Gaps = 2/237 (0%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R SGR + +R IS+ + +AEGS L++ G T +L AT+E +VP ++R GW+TA
Sbjct: 4 RPSGRAPDALRAISIEPGFAHHAEGSALIRMGGTEVLCAATVESRVPPFLRGQGKGWVTA 63
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
EYGMLPR+T R REA G+Q GR+QEIQR+IGR+LR+VVDL ALG I +DCDV+ A
Sbjct: 64 EYGMLPRATHTRGGREAAKGKQSGRTQEIQRLIGRSLRAVVDLEALGEMSITVDCDVLNA 123
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
DGGTR A+ITGAWVAL L+ + + L VAA+SCG+ ++DLDY E
Sbjct: 124 DGGTRCASITGAWVALRLALETLVRN--RVLARLPLTAQVAAVSCGLTGAGAVLDLDYDE 181
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
DS DANFV+T++G IVE+Q +AE A F+QD F +L LA+ A L Q+ +
Sbjct: 182 DSAAAADANFVLTETGGIVEIQATAEHAPFAQDQFDTLLRLARTGTAQLFIAQRQAV 238
>gi|170733613|ref|YP_001765560.1| polynucleotide phosphorylase/polyadenylase [Burkholderia
cenocepacia MC0-3]
gi|226702627|sp|B1JVP5|PNP_BURCC RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|169816855|gb|ACA91438.1| Polyribonucleotide nucleotidyltransferase [Burkholderia cenocepacia
MC0-3]
Length = 715
Score = 163 bits (411), Expect = 2e-38, Method: Composition-based stats.
Identities = 47/242 (19%), Positives = 91/242 (37%), Gaps = 18/242 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHG 57
R+ GR +R I + V GS L G+T L AT +E++ +
Sbjct: 322 RIDGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQALVVATLGTKGDEQIIDALEGEYRE 381
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y M P +TG + + R+ G + RAL + + I + +
Sbjct: 382 RFMLHYNMPPFATGETGRVGSPKRREIGHGRL----AKRALVKCLPSADEFGYSIRVVSE 437
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ G +AL D M+ + +L+G+ A+ +
Sbjct: 438 ITESNGSSSMASVCGGCLALMDAGVPMKAHVAGIAMGLILEGNKFAVLTD---------I 488
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T+ G + +Q + +++ L AK+ ++
Sbjct: 489 LGDEDHLGDMDFKVAGTEQG-VTALQMDIKIQGITKEIMQVALAQAKEGRLHILGKMTSA 547
Query: 238 IS 239
+S
Sbjct: 548 VS 549
Score = 95.7 bits (236), Expect = 5e-18, Method: Composition-based stats.
Identities = 35/233 (15%), Positives = 73/233 (31%), Gaps = 27/233 (11%)
Query: 13 EISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT----KHGWITAEYGMLP 67
++ L V++ A G+ +V DT +L T + + T G +P
Sbjct: 17 KVRLETGEVARQASGAVIVDVEDTVVLATVVGAKSAKPGQDFFPLTVDYLEKTYSAGKIP 76
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R GR R+I R LR + Q++I + +
Sbjct: 77 GGFFRR------EGRPSEHETLTSRLIDRPLRPLFPEGFYNEVQVVIHVLSVNPEIPADI 130
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
A+ GA A G V A + +++ + +
Sbjct: 131 PALIGASAA-------------LAVSGLPFNGPVGAARVAYIDNAYVLNPTRDQLKASSL 177
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
D T+ ++ V+ +E S++ + +++ I +++ +
Sbjct: 178 DLVVAGTER-AVLMVE--SEADQLSEEVMLGAVVFGHEQMQIAIDAIHELVRD 227
>gi|300311084|ref|YP_003775176.1| polyribonucleotide nucleotidyltransferase [Herbaspirillum
seropedicae SmR1]
gi|300073869|gb|ADJ63268.1| polyribonucleotide nucleotidyltransferase protein [Herbaspirillum
seropedicae SmR1]
Length = 712
Score = 163 bits (411), Expect = 2e-38, Method: Composition-based stats.
Identities = 48/241 (19%), Positives = 93/241 (38%), Gaps = 18/241 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +R IS+ V GS L G+T L ATL +E+ +
Sbjct: 320 RIDGRDTRTVRPISIRTGVLPRTHGSALFTRGETQALVIATLGTARDEQKIDGLLGEYSD 379
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y M P +TG + R+ G + RAL + + + S + + +
Sbjct: 380 RFMLHYNMPPFATGETGRVGTPKRREIGHGRL----AKRALIAALPAADEFSYSVRLVSE 435
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ G +AL D M+ + + +G+ A+ +
Sbjct: 436 ITESNGSSSMASVCGGCLALMDAGVPMKAHVAGIAMGLIKEGNKFAVLTD---------I 486
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T +G I +Q + +++ L AK+ ++ ++
Sbjct: 487 LGDEDHLGDMDFKVAGTANG-ITALQMDIKIQGITKEIMQVALEQAKEGRHHILGKMQEA 545
Query: 238 I 238
+
Sbjct: 546 V 546
Score = 98.0 bits (242), Expect = 1e-18, Method: Composition-based stats.
Identities = 38/232 (16%), Positives = 81/232 (34%), Gaps = 27/232 (11%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT----KHGWITAEYGMLPR 68
++L +++ A G+ +V DT +L T ++ + T G +P
Sbjct: 16 VTLETGEIARQASGAVVVSVEDTVILATVVARKEAKPGQDFFPLTVDYIEKTYAAGRIPG 75
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
R G+ + R+I R +R + L Q+II + +
Sbjct: 76 GFFKR------EGKPSEKETLTSRLIDRPIRPLFPEGYLNEVQVIIHVLSVNPEIDPDIP 129
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+ GA AL G V A G + G +++ + + +D
Sbjct: 130 AMIGASAALSLAGI-------------PFNGPVGAARVGYIDGQYVLNPTTSQLKSSQLD 176
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
T++ ++ V+ +E S++ + D+ +I+ ++ +
Sbjct: 177 LVVAGTET-AVLMVE--SEADQLSEEVMLGAVVFGHDQSKAVIEAIHALVRD 225
>gi|206560707|ref|YP_002231472.1| polynucleotide phosphorylase/polyadenylase [Burkholderia
cenocepacia J2315]
gi|257096670|sp|B4E5M6|PNP_BURCJ RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|198036749|emb|CAR52649.1| polyribonucleotide nucleotidyltransferase [Burkholderia cenocepacia
J2315]
Length = 713
Score = 163 bits (411), Expect = 2e-38, Method: Composition-based stats.
Identities = 47/242 (19%), Positives = 91/242 (37%), Gaps = 18/242 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHG 57
R+ GR +R I + V GS L G+T L AT +E++ +
Sbjct: 320 RIDGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQALVVATLGTKGDEQIIDALEGEYRE 379
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y M P +TG + + R+ G + RAL + + I + +
Sbjct: 380 RFMLHYNMPPFATGETGRVGSPKRREIGHGRL----AKRALVKCLPSADEFGYSIRVVSE 435
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ G +AL D M+ + +L+G+ A+ +
Sbjct: 436 ITESNGSSSMASVCGGCLALMDAGVPMKAHVAGIAMGLILEGNKFAVLTD---------I 486
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T+ G + +Q + +++ L AK+ ++
Sbjct: 487 LGDEDHLGDMDFKVAGTEQG-VTALQMDIKIQGITKEIMQVALAQAKEGRMHILGKMTSA 545
Query: 238 IS 239
+S
Sbjct: 546 VS 547
Score = 94.9 bits (234), Expect = 8e-18, Method: Composition-based stats.
Identities = 36/233 (15%), Positives = 73/233 (31%), Gaps = 27/233 (11%)
Query: 13 EISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT----KHGWITAEYGMLP 67
++ L V++ A G+ +V DT +L T + + T G +P
Sbjct: 15 KVRLETGEVARQASGAVIVDVEDTVVLATVVGAKSAKPGQDFFPLTVDYLEKTYSAGKIP 74
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R GR R+I R LR + Q++I + +
Sbjct: 75 GGFFRR------EGRPSEHETLTSRLIDRPLRPLFPEGFYNEVQVVIHVLSVNPEIPADI 128
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
A+ GA A G V A + +++ + +
Sbjct: 129 PALIGASAA-------------LAVSGLPFNGPVGAARVAYIDNAYVLNPTRDQIKASSL 175
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
D T+ ++ V+ +E S+D + +++ I +++ +
Sbjct: 176 DLVVAGTER-AVLMVE--SEADQLSEDVMLGAVVFGHEQMQIAIDAIHELVRD 225
>gi|291567427|dbj|BAI89699.1| ribonuclease PH [Arthrospira platensis NIES-39]
Length = 242
Score = 163 bits (411), Expect = 2e-38, Method: Composition-based stats.
Identities = 93/238 (39%), Positives = 144/238 (60%), Gaps = 4/238 (1%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R GR+ +Q+R + +++A S L K G+T +L T T++ VP ++++T GW+TA
Sbjct: 6 RPDGRERDQLRPVQFELDYTQFAAASVLAKSGNTQVLCTVTIQPGVPRFLQDTGKGWLTA 65
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
EY MLP +T R R + GR+QEIQR+IGR+LR+ VDL A+G + +D DV+QA
Sbjct: 66 EYRMLPGATPQRQPR--ELMKLSGRTQEIQRLIGRSLRAAVDLQAMGEITVTVDADVLQA 123
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
D GTRT +I G +VAL M + + + +AAIS GM+ G ++DL+Y E
Sbjct: 124 DAGTRTTSINGGFVALAHAFNKMVKRGELKRSPIIHQ--IAAISVGMMHGEALLDLNYQE 181
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
D D+D N VM D I+E+QG+AE + +++ +L+ A+ I +L +LQ+ V+
Sbjct: 182 DVAADIDFNVVMRDDLGIIELQGTAEAESLNRNQLNQILDYAEKGITELCQLQRQVLG 239
>gi|296448311|ref|ZP_06890203.1| polyribonucleotide nucleotidyltransferase [Methylosinus
trichosporium OB3b]
gi|296254188|gb|EFH01323.1| polyribonucleotide nucleotidyltransferase [Methylosinus
trichosporium OB3b]
Length = 714
Score = 163 bits (411), Expect = 2e-38, Method: Composition-based stats.
Identities = 49/242 (20%), Positives = 93/242 (38%), Gaps = 18/242 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
+R+ GR +R I V A GS L G+T L ATL +E+ + T
Sbjct: 315 VRIDGRDVKTVRPIVAEVGVLPRAHGSALFTRGETQALVVATLGTGEDEQFVDSLEGTYK 374
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P S G + + R+ G + RA+R ++ +A I +
Sbjct: 375 ERFLLHYNFPPYSVGETGRMGSPGRREIGHGKL----AWRAIRPMLPAAAEFPYTIRVVS 430
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
++ +++G + A + G+ +AL D ++ + + +L+G A+
Sbjct: 431 EITESNGSSSMATVCGSSLALMDAGVPLKKPTAGIAMGLILEGERFAVLSD--------- 481
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T G + +Q + A +++ L A+D ++
Sbjct: 482 ILGDEDHLGDMDFKVAGTSEG-VTSLQMDIKIAGITEEIMRVALAQARDGRLHILGEMAK 540
Query: 237 VI 238
+
Sbjct: 541 AL 542
Score = 102 bits (255), Expect = 3e-20, Method: Composition-based stats.
Identities = 34/224 (15%), Positives = 64/224 (28%), Gaps = 19/224 (8%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRST 70
R++ L +++ A+G+ +G+T +L T + E
Sbjct: 14 RKLVLETGKIARQADGAVFASWGETTVLATVVSAKAPKPGQDFFPLTVNYQEKAFAAGRI 73
Query: 71 GNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAI 130
GR R + R+I R +R + Q+I+ + A+
Sbjct: 74 P--GGYFKREGRPSERETLVSRLIDRPIRPLFPDGYRNDTQVILTVLSHDLENDPDILAM 131
Query: 131 TGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDAN 190
A A G V A G + G ++ E +D
Sbjct: 132 VAASAA-------------LTLSGIPFMGPVGAARVGYINGQLKLNPTIEEMKLSVLDLV 178
Query: 191 FVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
T ++ V+ A+ S+D + +I
Sbjct: 179 VAGTSD-AVLMVESEAQE--LSEDVMLGAVMTGHRGFQPVIDAI 219
>gi|322835049|ref|YP_004215076.1| ribonuclease PH [Rahnella sp. Y9602]
gi|321170250|gb|ADW75949.1| ribonuclease PH [Rahnella sp. Y9602]
Length = 238
Score = 163 bits (411), Expect = 2e-38, Method: Composition-based stats.
Identities = 119/240 (49%), Positives = 160/240 (66%), Gaps = 2/240 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR +GR Q+R ++LTR +K+AEGS LV+FGDT +L TAT+EE VP +++ GWIT
Sbjct: 1 MRPAGRNAQQVRPVTLTRHYTKHAEGSVLVEFGDTKVLCTATVEEGVPRFLKGQGQGWIT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPRST R REA G+QGGR+ EIQR+I R+LR+ VDL LG I +DCDV+Q
Sbjct: 61 AEYGMLPRSTHTRNAREAAKGKQGGRTLEIQRLIARSLRAAVDLKKLGEFTITLDCDVLQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+I+GA VAL D L + + +KG VAA+S G++ G + DL+Y
Sbjct: 121 ADGGTRTASISGACVALADALNALVAA--GKLKANPMKGMVAAVSVGIVKGEALCDLEYV 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
EDS + D N VM + G ++EVQG+AE FS + +L LA+ I + + QK ++
Sbjct: 179 EDSAAETDMNVVMMEDGRMIEVQGTAEGEPFSHEELLGLLALARGGIDTIFQAQKAALAE 238
>gi|162147166|ref|YP_001601627.1| polynucleotide phosphorylase/polyadenylase [Gluconacetobacter
diazotrophicus PAl 5]
gi|209544221|ref|YP_002276450.1| polynucleotide phosphorylase/polyadenylase [Gluconacetobacter
diazotrophicus PAl 5]
gi|187610270|sp|A9HF35|PNP_GLUDA RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|161785743|emb|CAP55314.1| putative polyribonucleotide nucleotidyltransferase
[Gluconacetobacter diazotrophicus PAl 5]
gi|209531898|gb|ACI51835.1| Polyribonucleotide nucleotidyltransferase [Gluconacetobacter
diazotrophicus PAl 5]
Length = 712
Score = 163 bits (411), Expect = 2e-38, Method: Composition-based stats.
Identities = 45/243 (18%), Positives = 87/243 (35%), Gaps = 18/243 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +R I + A GS L G+T L ATL +E+V +
Sbjct: 314 RIDGRDLKTVRPIVSEVGILPRAHGSALFTRGETQALVVATLGTAQDEQVIDALEGEYRT 373
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + + R+ G + RA+ ++ + I +
Sbjct: 374 NFMLHYNFPPYSVGECGRMGSPGRREIGHGKL----AWRAIHPLLPGKDTFPYTMRIVSE 429
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A + G +AL D ++ + + + A+ +
Sbjct: 430 ITESNGSSSMATVCGTSLALMDAGVPLKRPVAGIAMGLIKEDRGFAVLSD---------I 480
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T+SG I +Q + + + + L A+D ++
Sbjct: 481 LGDEDHLGDMDFKVAGTESG-ITALQMDIKITSITPEIMKIALGQARDGRLHILGEMSKA 539
Query: 238 ISN 240
++
Sbjct: 540 LTE 542
Score = 116 bits (289), Expect = 3e-24, Method: Composition-based stats.
Identities = 42/235 (17%), Positives = 75/235 (31%), Gaps = 28/235 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----HGWITAEYGML 66
R + L +++ A+G+ +V +GDT +L TA V + G +
Sbjct: 14 RPLVLETGKIARQADGAVVVTYGDTVVLCTAVGARSVKPGQDFFPLTVNYQEKAFAAGKI 73
Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
P R GR R+I R +R + + Q++ +
Sbjct: 74 PGGFFKR------EGRPSEIEVLNSRLIDRPIRPLFPENFRNEVQVVATVLSHDLENDPA 127
Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
AA+ G A G VAA G G I++ E
Sbjct: 128 IAALIGCSAA-------------LTLSGIPFFGPVAACRVGYADGAYILNPTLPEMKESA 174
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
+D T G ++ V+ +E + S+D + + +I ++
Sbjct: 175 LDLVVAGTSEG-VLMVE--SEASELSEDVMLGAVTFGHEAFQAVIDAI-ISLAEH 225
>gi|332981492|ref|YP_004462933.1| ribonuclease PH [Mahella australiensis 50-1 BON]
gi|332699170|gb|AEE96111.1| ribonuclease PH [Mahella australiensis 50-1 BON]
Length = 247
Score = 163 bits (411), Expect = 2e-38, Method: Composition-based stats.
Identities = 116/240 (48%), Positives = 157/240 (65%), Gaps = 2/240 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR R +Q+R ++LTR K+ +GS L++ G+T ++ TA +E+KVP +++ T GWIT
Sbjct: 1 MRAYHRGFDQLRPVTLTRDYLKHPDGSVLIEAGETKIICTAMIEDKVPPFLKGTGKGWIT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
+EYGMLP ST R RE+ G GR+QEIQR+IGR LRSVVD+SALG R I IDCDVIQ
Sbjct: 61 SEYGMLPGSTQARKIRESTRGHIEGRTQEIQRIIGRTLRSVVDISALGERTIWIDCDVIQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+ITG++VAL + + + K + VAA+S G++ G ++DL Y
Sbjct: 121 ADGGTRTASITGSFVALAIAINKLFEK--KKIERFPISNLVAAVSVGIVDGQIMLDLCYD 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
ED+ VD N MTD G VEVQG+ E A FS+ ++NLA I +L+ LQ D +
Sbjct: 179 EDARAQVDMNIAMTDDGRFVEVQGTGEAAPFSRRQMDELINLADKGIQELMALQIDCLGE 238
>gi|322418585|ref|YP_004197808.1| ribonuclease PH [Geobacter sp. M18]
gi|320124972|gb|ADW12532.1| ribonuclease PH [Geobacter sp. M18]
Length = 239
Score = 163 bits (411), Expect = 3e-38, Method: Composition-based stats.
Identities = 118/238 (49%), Positives = 164/238 (68%), Gaps = 2/238 (0%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R +GR + +RE+ +TR K+AEGS L++FGDT ++ AT+E KVP +++ GW+TA
Sbjct: 3 RTNGRAADALREVKITRNYLKHAEGSVLIEFGDTKVICNATVETKVPSFLKGKGTGWVTA 62
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
EY MLPR+T R +RE+ G+ GR+ EIQR+IGR+LR+VVD+ LG R I+IDCDVIQA
Sbjct: 63 EYCMLPRATHTRNQRESSKGKLSGRTHEIQRLIGRSLRAVVDMEKLGERSILIDCDVIQA 122
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
DGGTRTA+ITGA+VAL D LQ + D + L+ VAA+S G++ G P +DLDY E
Sbjct: 123 DGGTRTASITGAYVALADALQSLVDNGELTRS--PLREAVAAVSVGIVDGVPFLDLDYPE 180
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
DS+ +VD NFVMT S VEVQG+AE F+ + AM + A + L ++Q++ +
Sbjct: 181 DSSAEVDMNFVMTSSMRFVEVQGTAEAEPFTIEQMDAMRSHAILGLTRLFEIQQEALG 238
>gi|311104446|ref|YP_003977299.1| polyribonucleotide nucleotidyltransferase [Achromobacter
xylosoxidans A8]
gi|310759135|gb|ADP14584.1| polyribonucleotide nucleotidyltransferase [Achromobacter
xylosoxidans A8]
Length = 720
Score = 163 bits (411), Expect = 3e-38, Method: Composition-based stats.
Identities = 48/241 (19%), Positives = 94/241 (39%), Gaps = 18/241 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +R IS+ V A GS L G+T L ATL +E++ +
Sbjct: 320 RIDGRDTRTVRPISVRLGVLPRAHGSALFTRGETQALVVATLGTKQDEQIIDALMGEYRD 379
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y M P +TG + R+ G + R+L ++ I I +
Sbjct: 380 RFMMHYNMPPFATGETGRIGVPKRREIGHGRL----AKRSLIPLLPAPEDFQYTIRIVSE 435
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ G +A+ D ++D + +L G A+ +
Sbjct: 436 ITESNGSSSMASVCGGSLAMMDAGVPVKDHVAGVAMGLILDGGKFAVLTD---------I 486
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T++G + +Q + +++ L A++ ++ K+
Sbjct: 487 LGDEDHLGDMDFKVAGTENG-VTALQMDIKIQGITKEIMQVALAQAREGRLHILGKMKEA 545
Query: 238 I 238
+
Sbjct: 546 L 546
Score = 94.5 bits (233), Expect = 1e-17, Method: Composition-based stats.
Identities = 36/232 (15%), Positives = 79/232 (34%), Gaps = 27/232 (11%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPM----WIRNTKHGWITAEYGMLPR 68
+ L +++ A G+ +V DT +L T +K + + T G +P
Sbjct: 16 VVLETGEIARQASGAVVVSIEDTVVLATVVASKKAKPGQTFFPLTVDYIEKTYAAGRIPG 75
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
R G+ + R+I R LR + Q++I + + A
Sbjct: 76 GFFKR------EGKPSEKETLTSRLIDRPLRPLFPEDFYNEVQVVIHTLSVNPEIDPDIA 129
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+ GA A G + A G + G ++ + + +D
Sbjct: 130 AMIGASAA-------------LAISGIPFNGPIGAARVGYIDGQYAINPTASQLKSSKLD 176
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
T++ ++ V+ +E S++ + ++ +I +++ +
Sbjct: 177 LVVAGTEN-AVLMVE--SEADQLSEEIMLGGVVYGHQQMQAVINAIHELVKD 225
>gi|260599940|ref|YP_003212511.1| ribonuclease PH [Cronobacter turicensis z3032]
gi|260219117|emb|CBA34472.1| Ribonuclease PH [Cronobacter turicensis z3032]
Length = 240
Score = 163 bits (411), Expect = 3e-38, Method: Composition-based stats.
Identities = 123/240 (51%), Positives = 164/240 (68%), Gaps = 2/240 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR +GR +++R ++LTR +K+AEGS LV+FGDT +L TA++EE VP +++ GWIT
Sbjct: 3 MRPAGRSASEVRPVTLTRHYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWIT 62
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPR+T R REA G+QGGR+ EIQR+I RALR+ VDL ALG I +DCDVIQ
Sbjct: 63 AEYGMLPRATHTRNAREAAKGKQGGRTLEIQRLIARALRAAVDLKALGEFTITLDCDVIQ 122
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+ITGA VAL D L + + LKG VAA+S G++ G + DL+Y
Sbjct: 123 ADGGTRTASITGACVALADALNALVAA--GKLKTNPLKGMVAAVSVGIVNGEAVCDLEYV 180
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
EDS D D N VMT+ G ++EVQG+AE F+ + +L LA+ I ++ QK ++N
Sbjct: 181 EDSAADTDMNVVMTEDGRMIEVQGTAEGEPFTHEELLDLLALARGGIESIVASQKAALAN 240
>gi|325524616|gb|EGD02631.1| polynucleotide phosphorylase/polyadenylase [Burkholderia sp. TJI49]
Length = 713
Score = 163 bits (411), Expect = 3e-38, Method: Composition-based stats.
Identities = 46/242 (19%), Positives = 92/242 (38%), Gaps = 18/242 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHG 57
R+ GR +R I + V GS L G+T L AT +E++ +
Sbjct: 320 RIDGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQALVVATLGTKGDEQIIDALEGEYRE 379
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y M P +TG + + R+ G + RAL + + + I + +
Sbjct: 380 RFMLHYNMPPFATGETGRVGSPKRREIGHGRL----AKRALVACLPSADEFGYSIRVVSE 435
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ G +AL D M+ + +L+G+ A+ +
Sbjct: 436 ITESNGSSSMASVCGGCLALMDAGVPMKAHVAGIAMGLILEGNKFAVLTD---------I 486
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T+ G + +Q + +++ L AK+ ++
Sbjct: 487 LGDEDHLGDMDFKVAGTEQG-VTALQMDIKIQGITKEIMQVALAQAKEGRMHILGKMTSA 545
Query: 238 IS 239
++
Sbjct: 546 VA 547
Score = 97.6 bits (241), Expect = 1e-18, Method: Composition-based stats.
Identities = 35/233 (15%), Positives = 72/233 (30%), Gaps = 27/233 (11%)
Query: 13 EISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT----KHGWITAEYGMLP 67
++ L +++ A G+ +V DT +L T + + T G +P
Sbjct: 15 KVRLETGEIARQASGAVIVDVEDTVVLATVVGAKSAKPGQDFFPLTVDYIEKTYSAGKIP 74
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R GR R+I R LR + Q++I + +
Sbjct: 75 GGFFRR------EGRPSEHETLTSRLIDRPLRPLFPEGFYNEVQVVIHVLSVNPEIPADI 128
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
A+ GA A G V A + +++ + T +
Sbjct: 129 PALIGASAA-------------LAVSGLPFNGPVGAARVAYVNDQYVLNPTREQLKTSRL 175
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
D T+ ++ V+ +E +D + +++ I +++
Sbjct: 176 DLVVAGTER-AVLMVE--SEADQLPEDVMLGAVVFGHEQMQTAIDAIHELVRE 225
>gi|257056884|ref|YP_003134716.1| ribonuclease PH [Saccharomonospora viridis DSM 43017]
gi|256586756|gb|ACU97889.1| RNAse PH [Saccharomonospora viridis DSM 43017]
Length = 258
Score = 162 bits (410), Expect = 3e-38, Method: Composition-based stats.
Identities = 110/239 (46%), Positives = 159/239 (66%), Gaps = 1/239 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+R+ GR ++Q+RE+ +TR ++ GS L++ G+T +L A++ E VP W + GW+T
Sbjct: 2 VRVDGRDDDQLREVRITRGFQQWPAGSVLIEVGNTRVLCAASVVEGVPRWRNGSGLGWVT 61
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEY MLP +T R RE+V GR GGR+ EI R+IGR+LRS +DL+ALG I+IDCDVIQ
Sbjct: 62 AEYSMLPSATHTRGDRESVKGRIGGRTHEISRLIGRSLRSCIDLAALGENTIVIDCDVIQ 121
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTAAITG +VAL D + + + L V+A+S G++ G +DL Y
Sbjct: 122 ADGGTRTAAITGGYVALADAITWLGAAGRLAD-PKPLSAAVSAVSVGVVDGRVRLDLPYE 180
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
EDS +VD N V TD+G ++EVQG+ E ATF++ ML+LA+ A+L ++Q + ++
Sbjct: 181 EDSRAEVDMNVVATDAGTLIEVQGTGEGATFTRSTLDKMLDLAQAGCAELARIQAEALA 239
>gi|261823588|ref|YP_003261694.1| ribonuclease PH [Pectobacterium wasabiae WPP163]
gi|261607601|gb|ACX90087.1| ribonuclease PH [Pectobacterium wasabiae WPP163]
Length = 238
Score = 162 bits (410), Expect = 3e-38, Method: Composition-based stats.
Identities = 118/240 (49%), Positives = 161/240 (67%), Gaps = 2/240 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR +GR Q+R ++ TR +K+AEGS LV+FGDT +L AT+EE VP +++ GW+T
Sbjct: 1 MRPTGRSAQQVRPLTFTRHYTKHAEGSVLVEFGDTKVLCNATVEEGVPRFLKGQGQGWVT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPR+T +R REA G+QGGR+ EIQR+I R+LR+ +DL LG I +DCDV+Q
Sbjct: 61 AEYGMLPRATHSRNAREAAKGKQGGRTLEIQRLIARSLRAAIDLKVLGEYTITLDCDVLQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+ITGA VAL D L M +KG VAA+S G++ G + DL+Y
Sbjct: 121 ADGGTRTASITGACVALADALNQMVAK--GKLKKNPMKGMVAAVSVGIVNGEALCDLEYV 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
EDS + D N VMT+ G +VEVQG+AE FS + +L LA+ I +++ QK +++
Sbjct: 179 EDSAAETDMNVVMTEDGRMVEVQGTAEGEPFSHEELLTLLALARGGIDTIVQAQKAALAD 238
>gi|269120934|ref|YP_003309111.1| ribonuclease PH [Sebaldella termitidis ATCC 33386]
gi|268614812|gb|ACZ09180.1| ribonuclease PH [Sebaldella termitidis ATCC 33386]
Length = 232
Score = 162 bits (410), Expect = 3e-38, Method: Composition-based stats.
Identities = 104/233 (44%), Positives = 150/233 (64%), Gaps = 2/233 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR + R+ +++REI +T+ + EGS L++FG+T ++ AT+EEKVP +++ + GW+T
Sbjct: 1 MRNNNRKNDELREIKITKNFIMHPEGSVLIEFGNTKVICNATVEEKVPPFLKGSGSGWVT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEY M+PR+T R +RE G+ GR+ EIQR+IGR+LRS VDL LG R II+DCDVIQ
Sbjct: 61 AEYSMIPRATNVRTQREVNKGKPTGRTMEIQRLIGRSLRSAVDLKKLGERTIIVDCDVIQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+ITG ++AL ++ + + + VAAIS G + G ++DL+Y
Sbjct: 121 ADGGTRTASITGGYLALETAVEQLINS--GLLSQNPVIAKVAAISVGKVKGEILLDLEYS 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
EDS +VD N VM +E+QG+ E ATFS D + AK L ++
Sbjct: 179 EDSLAEVDMNIVMNSKNEFIEIQGTGEEATFSYDELIKFIEAAKKGFEKLFEI 231
>gi|255019644|ref|ZP_05291723.1| Ribonuclease PH [Acidithiobacillus caldus ATCC 51756]
gi|254970867|gb|EET28350.1| Ribonuclease PH [Acidithiobacillus caldus ATCC 51756]
Length = 241
Score = 162 bits (410), Expect = 3e-38, Method: Composition-based stats.
Identities = 124/234 (52%), Positives = 155/234 (66%), Gaps = 2/234 (0%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R SGR +R + + R +KYAEGS L+ GDT +L TA++E+KVP +++ GW+TA
Sbjct: 3 RPSGRDAQTLRPVEIIRPFTKYAEGSVLIACGDTRVLCTASIEDKVPPFLKGQGRGWVTA 62
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
EYGMLPRST R+ REA G+ GGR+ EIQR+IGR+LR+ VDL ALG R + IDCDV+QA
Sbjct: 63 EYGMLPRSTQERMPREAAKGKIGGRTHEIQRLIGRSLRAAVDLEALGERTVWIDCDVLQA 122
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
DGGTRTA+ITGA +AL D LQ + + VAA+S G+ I+DLDY E
Sbjct: 123 DGGTRTASITGACIALADALQGL--LQRGVLTHNPWRHWVAAVSVGIREDEAILDLDYAE 180
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
DST +VD N VMTD G VEVQG+AE A FS ML LA+ I LI QK
Sbjct: 181 DSTAEVDMNVVMTDDGRFVEVQGTAEGAAFSAARMADMLLLARRGIDRLIARQK 234
>gi|315292912|gb|EFU52264.1| ribonuclease PH [Escherichia coli MS 153-1]
Length = 214
Score = 162 bits (410), Expect = 3e-38, Method: Composition-based stats.
Identities = 118/216 (54%), Positives = 153/216 (70%), Gaps = 2/216 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR +GR NQ+R ++LTR +K+AEGS LV+FGDT +L TA++EE VP +++ GWIT
Sbjct: 1 MRPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWIT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPRST R REA G+QGGR+ EIQR+I RALR+ VDL ALG I +DCDV+Q
Sbjct: 61 AEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+ITGA VAL D LQ + + + +KG VAA+S G++ G + DL+Y
Sbjct: 121 ADGGTRTASITGACVALADALQKLVEN--GKLKTNPMKGMVAAVSVGIVNGEAVCDLEYV 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHF 216
EDS + D N VMT+ G I+EVQG+AE F+ +
Sbjct: 179 EDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEEL 214
>gi|308177068|ref|YP_003916474.1| tRNA nucleotidyltransferase [Arthrobacter arilaitensis Re117]
gi|307744531|emb|CBT75503.1| tRNA nucleotidyltransferase [Arthrobacter arilaitensis Re117]
Length = 244
Score = 162 bits (410), Expect = 3e-38, Method: Composition-based stats.
Identities = 114/240 (47%), Positives = 160/240 (66%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+R GR Q+R+I++TR S AEGS L++FG+T +L TA+ E VP W++ GW+T
Sbjct: 3 LRADGRGAAQLRDITITRGWSAQAEGSALIEFGNTRVLCTASFTEGVPRWLKGQGTGWVT 62
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEY MLPR+T R RE+V G+ GR+ EI R+IGR+LR+VVD ALG I++DCDV+Q
Sbjct: 63 AEYAMLPRATNTRNSRESVKGKLSGRTHEISRLIGRSLRAVVDTKALGENTIVLDCDVLQ 122
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTAAITGA+VAL + + Q ++VL VAAIS G++ G P++DL Y
Sbjct: 123 ADGGTRTAAITGAYVALAEAIAWATSQGIVKQNAKVLTDSVAAISVGIIDGTPMLDLPYE 182
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
ED + D N V+T SG VEVQG+AE F + A+L+LA ++L ++Q++ + +
Sbjct: 183 EDVRAETDMNVVVTGSGDFVEVQGTAEGVPFKRAELDALLDLALGGTSELAEIQRETLGS 242
>gi|50119101|ref|YP_048268.1| ribonuclease PH [Pectobacterium atrosepticum SCRI1043]
gi|61215912|sp|Q6DAW2|RNPH_ERWCT RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|49609627|emb|CAG73060.1| ribonuclease PH [Pectobacterium atrosepticum SCRI1043]
Length = 238
Score = 162 bits (410), Expect = 3e-38, Method: Composition-based stats.
Identities = 118/240 (49%), Positives = 161/240 (67%), Gaps = 2/240 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR +GR Q+R ++ TR +K+AEGS LV+FGDT +L AT+EE VP +++ GW+T
Sbjct: 1 MRPTGRSAQQVRPLTFTRHYTKHAEGSVLVEFGDTKVLCNATVEEGVPRFLKGQGQGWVT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPR+T +R REA G+QGGR+ EIQR+I R+LR+ +DL LG I +DCDV+Q
Sbjct: 61 AEYGMLPRATHSRNAREAAKGKQGGRTLEIQRLIARSLRAAIDLKVLGEYTITLDCDVLQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+ITGA VAL D L M +KG VAA+S G++ G + DL+Y
Sbjct: 121 ADGGTRTASITGACVALADALNQMVAN--GKLKKNPMKGMVAAVSVGIVKGEALCDLEYV 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
EDS + D N VMT+ G +VEVQG+AE FS + +L LA+ I +++ QK +++
Sbjct: 179 EDSAAETDMNVVMTEDGRMVEVQGTAEGEPFSHEELLTLLALARGGIDTIVQAQKAALAD 238
>gi|254247654|ref|ZP_04940975.1| 3' exoribonuclease:RNA binding S1:KH, type 1 [Burkholderia
cenocepacia PC184]
gi|124872430|gb|EAY64146.1| 3' exoribonuclease:RNA binding S1:KH, type 1 [Burkholderia
cenocepacia PC184]
Length = 730
Score = 162 bits (410), Expect = 3e-38, Method: Composition-based stats.
Identities = 47/242 (19%), Positives = 91/242 (37%), Gaps = 18/242 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHG 57
R+ GR +R I + V GS L G+T L AT +E++ +
Sbjct: 337 RIDGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQALVVATLGTKGDEQIIDALEGEYRE 396
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y M P +TG + + R+ G + RAL + + I + +
Sbjct: 397 RFMLHYNMPPFATGETGRVGSPKRREIGHGRL----AKRALVKCLPSADEFGYSIRVVSE 452
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ G +AL D M+ + +L+G+ A+ +
Sbjct: 453 ITESNGSSSMASVCGGCLALMDAGVPMKAHVAGIAMGLILEGNKFAVLTD---------I 503
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T+ G + +Q + +++ L AK+ ++
Sbjct: 504 LGDEDHLGDMDFKVAGTEQG-VTALQMDIKIQGITKEIMQVALAQAKEGRLHILGKMTSA 562
Query: 238 IS 239
+S
Sbjct: 563 VS 564
Score = 94.1 bits (232), Expect = 1e-17, Method: Composition-based stats.
Identities = 30/229 (13%), Positives = 67/229 (29%), Gaps = 19/229 (8%)
Query: 13 EISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG 71
++ L V++ A G+ +V DT +L T + +
Sbjct: 32 KVRLETGEVARQASGAVIVDVEDTVVLATVVGAKSAKPGQDFFP--LTVDYLEKTYSAGK 89
Query: 72 NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAIT 131
R R+I R LR + Q++I + + A+
Sbjct: 90 IAGGFFRRECRPSEHETLTSRLIDRPLRPLFSEGFYNEVQVVIHVLSVNPEIPADIPALI 149
Query: 132 GAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANF 191
GA A G V A + +++ + +D
Sbjct: 150 GASAA-------------LAVSGLPFNGPVGAARVAYIDNAYVLNPTRDQLKASSLDLVV 196
Query: 192 VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
T+ ++ V+ +E S++ + +++ I +++ +
Sbjct: 197 AGTER-AVLMVE--SEADQLSEEVMLGAVVFGHEQMQIAIDAIHELVRD 242
>gi|293603832|ref|ZP_06686247.1| polyribonucleotide nucleotidyltransferase [Achromobacter piechaudii
ATCC 43553]
gi|292817669|gb|EFF76735.1| polyribonucleotide nucleotidyltransferase [Achromobacter piechaudii
ATCC 43553]
Length = 720
Score = 162 bits (410), Expect = 3e-38, Method: Composition-based stats.
Identities = 48/241 (19%), Positives = 94/241 (39%), Gaps = 18/241 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +R IS+ V A GS L G+T L ATL +E++ +
Sbjct: 320 RIDGRDTRTVRPISVRLGVLPRAHGSALFTRGETQALVVATLGTKQDEQIIDALMGEYRD 379
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y M P +TG + R+ G + R+L ++ I I +
Sbjct: 380 RFMMHYNMPPFATGETGRIGVPKRREIGHGRL----AKRSLIPLLPAPEDFQYTIRIVSE 435
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ G +A+ D ++D + +L G A+ +
Sbjct: 436 ITESNGSSSMASVCGGSLAMMDAGVPVKDHVAGVAMGLILDGGKFAVLTD---------I 486
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T++G + +Q + +++ L A++ ++ K+
Sbjct: 487 LGDEDHLGDMDFKVAGTENG-VTALQMDIKIQGITKEIMQVALAQAREGRLHILTKMKEA 545
Query: 238 I 238
+
Sbjct: 546 L 546
Score = 95.7 bits (236), Expect = 5e-18, Method: Composition-based stats.
Identities = 36/232 (15%), Positives = 81/232 (34%), Gaps = 27/232 (11%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPM----WIRNTKHGWITAEYGMLPR 68
+ L +++ A G+ +V DT +L T +K + + T G +P
Sbjct: 16 VVLETGEIARQASGAVVVSIEDTVVLATVVASKKAKPGQTFFPLTVDYIEKTYAAGRIPG 75
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
R G+ + R+I R LR + Q++I + + A
Sbjct: 76 GFFKR------EGKPSEKETLTSRLIDRPLRPLFPEDFYNEVQVVIHTLSVNPEIDPDIA 129
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+ GA A G + A G + G ++ + + +D
Sbjct: 130 AMIGASAA-------------LAISGIPFNGPIGAARVGYIDGQYALNPTASQLKSSKLD 176
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
T++ ++ V+ A++ S++ + +++ +I +++ +
Sbjct: 177 LVVAGTEN-AVLMVESEAQQ--LSEEIMLGGVVYGHEQMQAVINAIHELVKD 225
>gi|254409968|ref|ZP_05023748.1| ribonuclease PH [Microcoleus chthonoplastes PCC 7420]
gi|196183004|gb|EDX77988.1| ribonuclease PH [Microcoleus chthonoplastes PCC 7420]
Length = 238
Score = 162 bits (410), Expect = 3e-38, Method: Composition-based stats.
Identities = 100/238 (42%), Positives = 146/238 (61%), Gaps = 4/238 (1%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R RQ NQ+R IS R +K+A S L K GDT +L T++ +P ++ T GW+TA
Sbjct: 5 RPDHRQPNQLRPISFVRGFTKFAPASVLTKCGDTQVLCNVTIQPGIPRFLEGTGSGWLTA 64
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
EY MLP +T R + + GR+QEIQR+IGR+LR+ VDL+ALG R + +D DV+QA
Sbjct: 65 EYRMLPGATPQR--QTRELLKLSGRTQEIQRLIGRSLRAAVDLTALGERTVFVDADVLQA 122
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
D GTRTA+ITG +VAL + L + + ++ +AA+S G+L G P +DL Y E
Sbjct: 123 DAGTRTASITGGYVALAEALDKLVQAGELERS--PIRHQIAAVSVGLLAGEPFLDLKYEE 180
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
D D N VM D +I+E+QG+AE +FS+ +++LA+ I +L+ Q+ +S
Sbjct: 181 DVAAQTDFNIVMNDELNIIEIQGTAEAESFSRTQLNQLIDLAETGIQELLDAQRHALS 238
>gi|156743859|ref|YP_001433988.1| ribonuclease PH [Roseiflexus castenholzii DSM 13941]
gi|156235187|gb|ABU59970.1| ribonuclease PH [Roseiflexus castenholzii DSM 13941]
Length = 261
Score = 162 bits (410), Expect = 3e-38, Method: Composition-based stats.
Identities = 108/239 (45%), Positives = 152/239 (63%), Gaps = 4/239 (1%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+R GR + +R + ++ YAEGS L++ G+T +L TA++EE VP W+R + GW+T
Sbjct: 2 IRNDGRAPSDLRPVRISIDTYGYAEGSALIEMGNTRVLCTASVEEGVPQWLRGQQRGWVT 61
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEY +LPRST R +R GR+QEIQR+IGRALR+ V L AL + IDCDV+Q
Sbjct: 62 AEYALLPRSTAQRTRR--ERNGLSGRTQEIQRLIGRALRAAVALEALDGFTVTIDCDVLQ 119
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+ITG +VAL L + + ++ VAA+S G + G ++DLDY
Sbjct: 120 ADGGTRTASITGGYVAL--ALALHRLTAAGRLAANPIRRAVAAVSAGYVGGNALLDLDYS 177
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
EDS D+D N V+TD G IVEVQ +AE S+ F +++LA D I L+ LQ++ ++
Sbjct: 178 EDSVADMDCNLVLTDDGAIVEVQSTAEARAVSRAEFDVLIDLASDGIHRLLALQREALA 236
>gi|320655608|gb|EFX23536.1| ribonuclease PH [Escherichia coli O55:H7 str. 3256-97 TW 07815]
Length = 236
Score = 162 bits (410), Expect = 4e-38, Method: Composition-based stats.
Identities = 125/240 (52%), Positives = 166/240 (69%), Gaps = 4/240 (1%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR +GR NQ+R ++LTR +K+AEGS LV+FGDT +L TA++EE VP +++ GWIT
Sbjct: 1 MRPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKG--QGWIT 58
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPRST R REA G+QGGR+ EIQR+I RALR+ VDL ALG I +DCDV+Q
Sbjct: 59 AEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQ 118
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+ITGA VAL D LQ + + + +KG VAA+S G++ G + DL+Y
Sbjct: 119 ADGGTRTASITGACVALADALQKLVEN--GKLKTNPMKGMVAAVSVGIVNGEAVCDLEYV 176
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
EDS + D N VMT+ G I+EVQG+AE F+ + +L LA+ I ++ QK ++N
Sbjct: 177 EDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLTLLALARGGIESIVATQKAALAN 236
>gi|91782608|ref|YP_557814.1| polynucleotide phosphorylase/polyadenylase [Burkholderia xenovorans
LB400]
gi|122970578|sp|Q142H7|PNP_BURXL RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|91686562|gb|ABE29762.1| Putative polyribonucleotide nucleotidyltransferase [Burkholderia
xenovorans LB400]
Length = 716
Score = 162 bits (410), Expect = 4e-38, Method: Composition-based stats.
Identities = 47/242 (19%), Positives = 91/242 (37%), Gaps = 18/242 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHG 57
R+ GR +R I + V GS L G+T L AT +E+ +
Sbjct: 322 RIDGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQALVVATLGTKGDEQNIDALEGEYRE 381
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y M P +TG + + R+ G + RAL + + + I + +
Sbjct: 382 RFMLHYNMPPFATGETGRVGSPKRREIGHGRL----AKRALAACLPSADEFGYSIRVVSE 437
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ G +AL D M+ + +L+G+ A+ +
Sbjct: 438 ITESNGSSSMASVCGGCLALMDAGVPMKAHVAGIAMGLILEGNKFAVLTD---------I 488
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T+ G + +Q + +++ L AK+ ++
Sbjct: 489 LGDEDHLGDMDFKVAGTEQG-VTALQMDIKIQGITREIMQVALAQAKEGRLHILGKMTSA 547
Query: 238 IS 239
+S
Sbjct: 548 VS 549
Score = 89.9 bits (221), Expect = 2e-16, Method: Composition-based stats.
Identities = 36/233 (15%), Positives = 72/233 (30%), Gaps = 31/233 (13%)
Query: 13 EISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT----KHGWITAEYGMLP 67
++ L +++ A G+ +V DT +L T + T G +P
Sbjct: 17 KVRLETGEIARQASGAVIVDVEDTVVLATVVGARTAKPGQDFFPLTVDYLEKTYAAGKIP 76
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R GR I R+I R LR + Q++I + +
Sbjct: 77 GGFFRR------EGRPSEGETLISRLIDRPLRPLFPEGFYNEVQVVIHVLSLNPEIPADI 130
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
A+ GA A G V A + +++ + +
Sbjct: 131 PALIGASAA-------------LAVSGLPFNGPVGAARVAYINNEYVLNPTRPQMKESAL 177
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKD----RIADLIKLQKD 236
D T+ ++ V+ A++ S++ + + I + L ++
Sbjct: 178 DLIVAGTER-AVLMVESEAQQ--LSEEVMLGGVVFGHEQMQIAIDAIHDLVRE 227
>gi|192362066|ref|YP_001980727.1| ribonuclease PH [Cellvibrio japonicus Ueda107]
gi|226736897|sp|B3PGE8|RNPH_CELJU RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|190688231|gb|ACE85909.1| ribonuclease PH [Cellvibrio japonicus Ueda107]
Length = 239
Score = 162 bits (410), Expect = 4e-38, Method: Composition-based stats.
Identities = 120/226 (53%), Positives = 159/226 (70%), Gaps = 2/226 (0%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R SGR +R I +TRR +K+AEGS L++FGDT ++ TA++ VP ++R GW+TA
Sbjct: 3 RPSGRNPQALRPIRITRRYTKHAEGSVLIEFGDTKVICTASVVAGVPSFLRGQGQGWLTA 62
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
EYGMLPRSTG R+ REA G+Q GR+ EIQR+IGR+LR+ +DL+ALG I +DCDVIQA
Sbjct: 63 EYGMLPRSTGTRMDREAARGKQQGRTVEIQRLIGRSLRAAIDLNALGENTIHLDCDVIQA 122
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
DGGTRTA+ITGAWVAL D + ++ + LK +A++S G+ G P++DLDY E
Sbjct: 123 DGGTRTASITGAWVALADAVAWLKAE--GRVTDEPLKRAIASVSVGIYQGVPVLDLDYPE 180
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRI 227
DS D D N VM D G I+E+QG+AE F++ F AML+LAK I
Sbjct: 181 DSAADTDMNVVMGDDGGIIEIQGTAEAEPFTEAEFAAMLSLAKQGI 226
>gi|114705224|ref|ZP_01438132.1| polyribonucleotide nucleotidyltransferase [Fulvimarina pelagi
HTCC2506]
gi|114540009|gb|EAU43129.1| polyribonucleotide nucleotidyltransferase [Fulvimarina pelagi
HTCC2506]
Length = 711
Score = 162 bits (410), Expect = 4e-38, Method: Composition-based stats.
Identities = 43/243 (17%), Positives = 87/243 (35%), Gaps = 18/243 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR + +R+I + GS L G+T L ATL +E+ + T
Sbjct: 317 RIDGRSLDTVRKIVSEVGILPRTHGSALFTRGETQALVVATLGTGEDEQFVDALTGTYKE 376
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + + R+ G + RA+R ++ + + +
Sbjct: 377 RFLLHYNFPPYSVGETGRMGSPGRREIGHGKL----AWRAIRPMLPAAEQFPYTLRAVSE 432
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A + G +A D ++ + + +G A+ +
Sbjct: 433 ITESNGSSSMATVCGTSLAFMDAGVPLKRPVAGIAMGLIKEGERFAVLSD---------I 483
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T+ G I +Q + +++ L+ AK ++
Sbjct: 484 LGDEDHLGDMDFKVAGTEEG-ITSLQMDIKIQGITEEIMKVALDQAKGGRVHILGEMNKA 542
Query: 238 ISN 240
+
Sbjct: 543 LGE 545
Score = 101 bits (250), Expect = 1e-19, Method: Composition-based stats.
Identities = 32/228 (14%), Positives = 70/228 (30%), Gaps = 27/228 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKV----PMWIRNTKHGWITAEYGML 66
R ++L +++ A+G+ L +G+T ++ T E++ + + T G +
Sbjct: 14 RRLTLETGKIARQADGAVLATYGETVVMATVVSEKQPKAGFDFFPLTVNYQEKTFAAGKI 73
Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
P R GR + R+I R +R + Q+++ +
Sbjct: 74 PGGFFKR------EGRPSEKETLTSRLIDRPIRPLFAEGYKNDTQVVLTVLQHDLENDPD 127
Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
+ + + G + G + G V+ + E
Sbjct: 128 V-------------VAMVAASAALTLSGVPFMGPIGGARVGYINGEYKVNPNVDEMPESA 174
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
+D T ++ V+ A S+D + +I
Sbjct: 175 LDLVVAGTKD-AVLMVESEAHE--LSEDVMLGAVMEGHRSFQPVIDAI 219
>gi|304399022|ref|ZP_07380891.1| ribonuclease PH [Pantoea sp. aB]
gi|308188661|ref|YP_003932792.1| ribonuclease PH [Pantoea vagans C9-1]
gi|304353482|gb|EFM17860.1| ribonuclease PH [Pantoea sp. aB]
gi|308059171|gb|ADO11343.1| ribonuclease PH [Pantoea vagans C9-1]
Length = 238
Score = 162 bits (409), Expect = 4e-38, Method: Composition-based stats.
Identities = 122/240 (50%), Positives = 165/240 (68%), Gaps = 2/240 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR +GR Q+R ++LTR +K+AEGS LV+FG+T +L TA+++E VP +++ GW+T
Sbjct: 1 MRPAGRSAQQVRPVTLTRNYTKHAEGSVLVEFGETKVLCTASVDEGVPRFLKGQGQGWVT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPRST +R+ REA G+QGGR+ EIQR+I R+LR+ VDL ALG I +DCDVIQ
Sbjct: 61 AEYGMLPRSTHSRMAREAAKGKQGGRTLEIQRLIARSLRAAVDLKALGEFTITLDCDVIQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+ITGA VAL D L + + +KG VAAIS G++ G + DL+Y
Sbjct: 121 ADGGTRTASITGACVALADALNKLVAS--GKLKANPMKGMVAAISVGIVKGEALCDLEYV 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
EDS + D N VM + G ++EVQG+AE FS + +L LA+ I +LI+ QK + N
Sbjct: 179 EDSAAETDMNVVMMEDGRMIEVQGTAEGEPFSHEELLTLLALARGGIEELIQAQKAALEN 238
>gi|163840218|ref|YP_001624623.1| ribonuclease PH [Renibacterium salmoninarum ATCC 33209]
gi|162953694|gb|ABY23209.1| ribonuclease PH [Renibacterium salmoninarum ATCC 33209]
Length = 250
Score = 162 bits (409), Expect = 4e-38, Method: Composition-based stats.
Identities = 115/239 (48%), Positives = 162/239 (67%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+R GR +Q+R+IS+TR S AEGS L++FG+T +L T++L E VP W+R GW+T
Sbjct: 10 LRADGRTADQLRDISITRGWSSQAEGSALIEFGNTRVLCTSSLTEGVPRWLRGEGRGWVT 69
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEY MLPR+T R RE+V G+ GGR+ EI R+IGR+LRS++D ALG I++DCDV+Q
Sbjct: 70 AEYAMLPRATNTRSDRESVKGKIGGRTHEISRLIGRSLRSIIDTKALGENTIVLDCDVLQ 129
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTAAITGA+VAL + ++ + +Q L VAA+S G++ P++DL Y
Sbjct: 130 ADGGTRTAAITGAYVALAESIRFARENKLISATAQPLTDTVAAVSAGIIDTVPMLDLAYV 189
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
ED + D N V+T SG VEVQG+AE A F ++ A+L+LA A L ++Q++ +
Sbjct: 190 EDVRAETDMNVVVTGSGKFVEVQGTAEGAPFDRNQLDALLDLALLGTAQLAQIQRETLG 248
>gi|294637890|ref|ZP_06716159.1| tRNA nucleotidyltransferase [Edwardsiella tarda ATCC 23685]
gi|291088916|gb|EFE21477.1| tRNA nucleotidyltransferase [Edwardsiella tarda ATCC 23685]
Length = 237
Score = 162 bits (409), Expect = 4e-38, Method: Composition-based stats.
Identities = 122/239 (51%), Positives = 161/239 (67%), Gaps = 2/239 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR GR Q+R + LTR +K+AEGS LV+FGDT +L TA+++E VP +++ GW+T
Sbjct: 1 MRPEGRAAGQIRPLRLTRHYTKHAEGSVLVEFGDTKVLCTASVDEGVPRFLKGQGQGWVT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPRST +R+ REA G+QGGR+ EIQR+I R+LR+ VDL LG I +DCDVIQ
Sbjct: 61 AEYGMLPRSTHSRMAREAAKGKQGGRTMEIQRLIARSLRAAVDLKKLGEFTITLDCDVIQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+ITGA VAL D L + LKG VAA+S G++ G + DL+Y
Sbjct: 121 ADGGTRTASITGACVALADALNALVASGKLKAS--PLKGMVAAVSVGIVAGEALCDLEYV 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
EDS + D N VM + G ++EVQG+AE FS + +L LAKD I +I+ QK ++
Sbjct: 179 EDSAAETDMNVVMMEDGRMIEVQGTAEGEPFSHEELLTLLALAKDGIGQIIQAQKAALA 237
>gi|260893502|ref|YP_003239599.1| polyribonucleotide nucleotidyltransferase [Ammonifex degensii KC4]
gi|260865643|gb|ACX52749.1| polyribonucleotide nucleotidyltransferase [Ammonifex degensii KC4]
Length = 736
Score = 162 bits (409), Expect = 4e-38, Method: Composition-based stats.
Identities = 43/242 (17%), Positives = 93/242 (38%), Gaps = 18/242 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56
+R GR +R +S+ + GS L G T +L+ T +E++ + +
Sbjct: 325 IRADGRGFKDIRPLSVEVGLLPRTHGSALFTRGQTQVLSVVTLGAVGDEQILDDLDLEES 384
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P STG + R+ G + RAL +V+ I +
Sbjct: 385 KRFMHHYNFPPFSTGEVRPIRSPGRREIGHGAL----VERALEAVIPDEDAFPYTIRVVS 440
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V++++G T A++ + +AL D ++ + + + +
Sbjct: 441 EVLESNGSTSMASVCASSLALMDAGVPIKAPVAGIAMGLIKEEDEFIVLTD--------- 491
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T++G I +Q + A +++ L A++ ++++ +
Sbjct: 492 IQGLEDHLGDMDFKVAGTEAG-ITALQMDIKIAGVTKEILATALAQAREARLYILEVMRR 550
Query: 237 VI 238
+
Sbjct: 551 AL 552
Score = 97.6 bits (241), Expect = 1e-18, Method: Composition-based stats.
Identities = 36/235 (15%), Positives = 78/235 (33%), Gaps = 28/235 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKHGWITAEYGML 66
R + L V++ A + L K+GDT +L TAT+ E + + + G +
Sbjct: 16 RPLVLEVGRVARQASSAVLAKYGDTVVLVTATMAPEPREGIDFFPLLVDYEERHYAVGKI 75
Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
P R G+ G ++ R+I R++R + ++ + +
Sbjct: 76 PGGFLRR------EGKPGEKAVLSARLIDRSIRPLFPKKMRNDVHVVATILSVDQNCAPE 129
Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
A+ GA A G + + G++ G +++ ++
Sbjct: 130 ITAMIGASAA-------------LTLSEIPFAGPIGGVIVGLVDGELVLNPTVEQEEKSL 176
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
+ T +V V+ A +D + + ++ + + E
Sbjct: 177 LHLVVAGTKE-AVVMVECGAREVP--EDKVVEAIEFGHQTVKEIAAFI-ETLREE 227
>gi|58040019|ref|YP_191983.1| polynucleotide phosphorylase/polyadenylase [Gluconobacter oxydans
621H]
gi|81351767|sp|Q5FQL9|PNP_GLUOX RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|58002433|gb|AAW61327.1| Polyribonucleotide nucleotidyltransferase [Gluconobacter oxydans
621H]
Length = 716
Score = 162 bits (409), Expect = 4e-38, Method: Composition-based stats.
Identities = 40/244 (16%), Positives = 86/244 (35%), Gaps = 18/244 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
+R+ GR +R I + A GS L G+T L ATL +E++ +
Sbjct: 313 IRIDGRDLKTVRPILAEVGILPRAHGSSLFTRGETQALVVATLGTGQDEQIIDALEGEYR 372
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P S G + + R+ G + RA+ ++ + +
Sbjct: 373 SNFMLHYNFPPYSVGECGRMGSPGRREIGHGKL----AWRAIHPLLPSKEAFPYTMRVVS 428
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
++ +++G + A + G+ +AL D + + + + A+
Sbjct: 429 EITESNGSSSMATVCGSSLALMDAGVPLPRPVAGIAMGLIKEDRGYAVLSD--------- 479
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T G + +Q + + + + L A++ ++
Sbjct: 480 ILGDEDHLGDMDFKVAGTADG-VTALQMDIKITSITPEIMKIALEQAREGRIHILGEMAK 538
Query: 237 VISN 240
++
Sbjct: 539 ALTE 542
Score = 99.1 bits (245), Expect = 4e-19, Method: Composition-based stats.
Identities = 39/235 (16%), Positives = 73/235 (31%), Gaps = 28/235 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----HGWITAEYGML 66
R + L V++ A+G+ ++ +GDT +L TA + V + G +
Sbjct: 14 RPLILETGKVARQADGAVMITYGDTVVLCTAVGAKSVKPGQDFFPLTVNYQEKAYAAGKI 73
Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
P R GR R+I R +R + + QI +
Sbjct: 74 PGGFFKR------EGRPSEAEVLNARLIDRPIRPLFPENFRNEVQITATVLSYDNENDPA 127
Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
++ G A G VA G + G +V+ + E
Sbjct: 128 LVSLIGCSAA-------------LTLSGIPFFGPVACARIGRIDGKLVVNPTHDEIKDST 174
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
+D T G ++ V+ A + ++ + L +I ++
Sbjct: 175 LDLMVAGTAEG-VLMVESEASELS--EETMLEAVTLGHTSFQPVIDAI-IALAEH 225
>gi|33591966|ref|NP_879610.1| polynucleotide phosphorylase/polyadenylase [Bordetella pertussis
Tohama I]
gi|33597949|ref|NP_885592.1| polynucleotide phosphorylase/polyadenylase [Bordetella
parapertussis 12822]
gi|81425386|sp|Q7VZU0|PNP_BORPE RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|81426411|sp|Q7W570|PNP_BORPA RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|33571610|emb|CAE41100.1| polyribonucleotide nucleotidyltransferase [Bordetella pertussis
Tohama I]
gi|33574378|emb|CAE38716.1| polyribonucleotide nucleotidyltransferase [Bordetella
parapertussis]
gi|332381383|gb|AEE66230.1| polynucleotide phosphorylase/polyadenylase [Bordetella pertussis
CS]
Length = 719
Score = 162 bits (409), Expect = 4e-38, Method: Composition-based stats.
Identities = 48/242 (19%), Positives = 91/242 (37%), Gaps = 18/242 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +R IS+ V A GS L G+T L ATL +E++ +
Sbjct: 320 RIDGRDTRTVRPISIRLGVLPRAHGSALFTRGETQALVVATLGTKQDEQIIDALMGEYRD 379
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y M P +TG + R+ G + RAL ++ I + +
Sbjct: 380 RFMLHYNMPPFATGETGRIGVPKRREIGHGRL----AKRALLPLLPAPEDFQYTIRLVSE 435
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ G +A+ D D + +L A+ +
Sbjct: 436 ITESNGSSSMASVCGGSLAMMDAGVPTNDHVAGVAMGLILDSGKFAVLTD---------I 486
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T++G I +Q + +++ L A++ ++ +D
Sbjct: 487 LGDEDHLGDMDFKVAGTETG-ITALQMDIKIQGITKEIMQVALAQAREGRLHILGKMRDA 545
Query: 238 IS 239
+
Sbjct: 546 LE 547
Score = 93.4 bits (230), Expect = 3e-17, Method: Composition-based stats.
Identities = 39/233 (16%), Positives = 77/233 (33%), Gaps = 31/233 (13%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT----KHGWITAEYGMLPR 68
+ L +++ A G+ LV DT +L T +K + T G +P
Sbjct: 16 VVLETGEMARQASGAVLVSVEDTVVLATVVAAKKAKAGQDFFPLTVDYIEKTYAAGRIPG 75
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
R G+ + R+I R LR + Q++I + D
Sbjct: 76 GFFKR------EGKPSEKETLTSRLIDRPLRPLFPEGFYNDVQVVIHTLSVNPDIDPDIP 129
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+ GA A G + A G + G +++ + + +D
Sbjct: 130 AMIGASAA-------------LAISGIPFNGPIGAARVGYVDGQYVLNPTATQLKSSKMD 176
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKD----RIADLIKLQKDV 237
T++ ++ V+ A++ S++ + + I + L +D
Sbjct: 177 LVVAGTEN-AVLMVESEAKQ--LSEEIMLGGVVFGHEQMQAAINAIHDLVRDA 226
>gi|320530746|ref|ZP_08031790.1| ribonuclease PH [Selenomonas artemidis F0399]
gi|320137033|gb|EFW28971.1| ribonuclease PH [Selenomonas artemidis F0399]
Length = 248
Score = 162 bits (409), Expect = 4e-38, Method: Composition-based stats.
Identities = 104/241 (43%), Positives = 146/241 (60%), Gaps = 3/241 (1%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R R+ +Q+R + + R +Y GS L++ G T ++ +AT+EE+VP +++ + GW+TA
Sbjct: 3 RRDLRRPDQLRPVRIERGYQRYPAGSALIEMGHTRVVCSATVEERVPFFLKGSGTGWVTA 62
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
EY MLP + R REA GRQ GR+QEIQR+IGRALR+VVD ALG R I IDCDV+QA
Sbjct: 63 EYAMLPGAGTERTAREAARGRQTGRTQEIQRLIGRALRAVVDTRALGERTIHIDCDVVQA 122
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
DGGTRTA+ITGA+VAL + + V A P++D+ Y E
Sbjct: 123 DGGTRTASITGAFVALVEACATFYTKRG---VFPVRDYAAAVSVGIGAENTPLLDICYEE 179
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
D+ VD N VMT +G +EVQG+ E FS+ A+L+L + I +LI +QK +
Sbjct: 180 DAQAMVDMNLVMTGAGSFIEVQGTGEGRAFSRAEMNALLDLGERGIRELIDVQKRALGET 239
Query: 242 V 242
+
Sbjct: 240 L 240
>gi|260432181|ref|ZP_05786152.1| polyribonucleotide nucleotidyltransferase [Silicibacter
lacuscaerulensis ITI-1157]
gi|260416009|gb|EEX09268.1| polyribonucleotide nucleotidyltransferase [Silicibacter
lacuscaerulensis ITI-1157]
Length = 716
Score = 162 bits (409), Expect = 4e-38, Method: Composition-based stats.
Identities = 45/243 (18%), Positives = 87/243 (35%), Gaps = 17/243 (6%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +R I + GS L G+T L TL +E+ +
Sbjct: 318 RIDGRSTTDVRPIVAETGLLPRTHGSALFTRGETQALAVTTLGTGDDEQFIDALHGNFKS 377
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + R+ G + RAL++V+ I + +
Sbjct: 378 NFLLHYNFPPYSVGEVGRVGPPGRREVGHGKL----AWRALQAVLPAPTDFPYTIRVVSE 433
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ G +++ D ++ + +L+ + D+
Sbjct: 434 ITESNGSSSMASVCGGSLSMMDAGVPLKAPVAGVAMGLILEED--------GDYAVLTDI 485
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T++G I +Q + A + + L AKD ++
Sbjct: 486 LGDEDHLGDMDFKVAGTENG-ITSLQMDIKVAGITPEIMEKALAQAKDGRLHILNEMSKA 544
Query: 238 ISN 240
+S
Sbjct: 545 LSE 547
Score = 105 bits (261), Expect = 6e-21, Method: Composition-based stats.
Identities = 31/228 (13%), Positives = 63/228 (27%), Gaps = 25/228 (10%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGN 72
++L V++ A+GS + G+T ++ T ++ E
Sbjct: 16 LTLETGKVARQADGSVIATLGETSVMANVTFAKEQKPGQDFFPLTVHYQEKYYAAGKVP- 74
Query: 73 RVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITG 132
R + R+I R +R + ++ A+
Sbjct: 75 -GGFFKREARPTEKETLTARLIDRPIRPLFVDGFKNEVLVMCTVLSHDLVNDPDIVAMIA 133
Query: 133 AWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDST------ID 186
A A +G +A G G +++ +
Sbjct: 134 ASAA-------------LTISGAPFRGPIAGCRVGYTNGEYVLNPTVDDMQDLRLNPEQR 180
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
+D T ++ V+ A S+ +N A +I +I L
Sbjct: 181 LDLVVAGTKD-AVMMVESEAYE--LSEAEMLGAVNFAHQQIQPVIDLI 225
>gi|146329836|ref|YP_001209934.1| polynucleotide phosphorylase/polyadenylase [Dichelobacter nodosus
VCS1703A]
gi|187610297|sp|A5EXU0|PNP_DICNV RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|146233306|gb|ABQ14284.1| polyribonucleotide nucleotidyltransferase [Dichelobacter nodosus
VCS1703A]
Length = 693
Score = 162 bits (409), Expect = 4e-38, Method: Composition-based stats.
Identities = 46/242 (19%), Positives = 94/242 (38%), Gaps = 18/242 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +R I++ V A GS L G+T L ATL + ++ +
Sbjct: 315 RIDGRDTKTVRPITIHTSVLPRAHGSALFTRGETQALVVATLGTGRDAQLLDTLDGEVRD 374
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y LP S G + + R+ G + R L +V+ L I + +
Sbjct: 375 NFMLHYNFLPFSVGEIGRIGSPKRREIGHGRL----ARRGLSAVLPLEEDFPYTIRVVSE 430
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ G+ +AL D ++ + + +G AI +
Sbjct: 431 ITESNGSSSMASVCGSSLALMDAGVPVQTPVAGIAMGLIKEGDEFAILTD---------I 481
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D + +G + +Q + +++ L+ A + ++++
Sbjct: 482 LGDEDHLGDMDFKVAGSATG-VTALQMDIKINGITEEIMRQALSQAHEGRLHILEVMNQA 540
Query: 238 IS 239
I+
Sbjct: 541 IA 542
Score = 101 bits (251), Expect = 1e-19, Method: Composition-based stats.
Identities = 40/228 (17%), Positives = 74/228 (32%), Gaps = 27/228 (11%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTKHGWITAEYGMLPR 68
++L +++ A+G+ +V DT +L T T+ E + + G +P
Sbjct: 14 VTLETGEIARQADGAVIVNMDDTIVLVTVVANKTVAEGQDFFPLTVDYQEKNYAAGKIPG 73
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
R GR I R+I R +R + L QII +
Sbjct: 74 GFFKR------EGRPSEEETLISRLIDRPIRPLFADGFLNEVQIIATVLSYNPEVSPDIP 127
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
+I GA A G +AA G + +++ +D
Sbjct: 128 SIIGASAA-------------LKLSGLPFNGPIAAARVGYVNDAYVLNPSPKALKNSRLD 174
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
T+S ++ V+ +E S+ + + +IK +
Sbjct: 175 LVVAGTES-AVLMVE--SEADQLSEAVMLEAVMFGHRQQQVVIKSINE 219
>gi|33602856|ref|NP_890416.1| polynucleotide phosphorylase/polyadenylase [Bordetella
bronchiseptica RB50]
gi|81429864|sp|Q7WCQ0|PNP_BORBR RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|33577298|emb|CAE35855.1| polyribonucleotide nucleotidyltransferase [Bordetella
bronchiseptica RB50]
Length = 719
Score = 162 bits (409), Expect = 4e-38, Method: Composition-based stats.
Identities = 48/242 (19%), Positives = 91/242 (37%), Gaps = 18/242 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +R IS+ V A GS L G+T L ATL +E++ +
Sbjct: 320 RIDGRDTRTVRPISIRLGVLPRAHGSALFTRGETQALVVATLGTKQDEQIIDALMGEYRD 379
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y M P +TG + R+ G + RAL ++ I + +
Sbjct: 380 RFMLHYNMPPFATGETGRIGVPKRREIGHGRL----AKRALLPLLPAPEDFQYTIRLVSE 435
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ G +A+ D D + +L A+ +
Sbjct: 436 ITESNGSSSMASVCGGSLAMMDAGVPTNDHVAGVAMGLILDSGKFAVLTD---------I 486
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T++G I +Q + +++ L A++ ++ +D
Sbjct: 487 LGDEDHLGDMDFKVAGTETG-ITALQMDIKIQGITKEIMQVALAQAREGRLHILGKMRDA 545
Query: 238 IS 239
+
Sbjct: 546 LE 547
Score = 93.0 bits (229), Expect = 3e-17, Method: Composition-based stats.
Identities = 39/233 (16%), Positives = 77/233 (33%), Gaps = 31/233 (13%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT----KHGWITAEYGMLPR 68
+ L +++ A G+ LV DT +L T +K + T G +P
Sbjct: 16 VVLETGEMARQASGAVLVSVEDTVVLATVVAAKKAKAGQDFFPLTVDYIEKTYAAGRIPG 75
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
R G+ + R+I R LR + Q++I + D
Sbjct: 76 GFFKR------EGKPSEKETLTSRLIDRPLRPLFPEGFYNDVQVVIHTLSVNPDIDPDIP 129
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+ GA A G + A G + G +++ + + +D
Sbjct: 130 AMIGASAA-------------LAISGIPFNGPIGAARVGYVDGQYVLNPTATQLKSSKMD 176
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKD----RIADLIKLQKDV 237
T++ ++ V+ A++ S++ + + I + L +D
Sbjct: 177 LVVAGTEN-AVLMVESEAKQ--LSEEIMLGGVVFGHEQMQTAINAIHDLVRDA 226
>gi|182680095|ref|YP_001834241.1| polyribonucleotide nucleotidyltransferase [Beijerinckia indica
subsp. indica ATCC 9039]
gi|257096681|sp|B2ICY4|PNP_BEII9 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|182635978|gb|ACB96752.1| Polyribonucleotide nucleotidyltransferase [Beijerinckia indica
subsp. indica ATCC 9039]
Length = 715
Score = 162 bits (409), Expect = 4e-38, Method: Composition-based stats.
Identities = 48/242 (19%), Positives = 92/242 (38%), Gaps = 18/242 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
+R+ GR +R I + A GS L G+T L ATL +E++ + T
Sbjct: 317 IRIDGRDVKTVRPILAEVGILPRAHGSALFTRGETQALVVATLGTGEDEQLIDNLEGTYR 376
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P S G + + R+ G + RA+ ++ A I +
Sbjct: 377 ERFLLHYNFPPYSVGEAGRMGSPGRREIGHGKL----AWRAIHPMLPTPAEFPYTIRVVS 432
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
++ +++G + A + G+ +AL D ++ + + +L+G A+
Sbjct: 433 EITESNGSSSMATVCGSSLALMDAGVPLKRPTAGIAMGLILEGERYAVLSD--------- 483
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T+ G I +Q + +++ L AK+ ++
Sbjct: 484 ILGDEDHLGDMDFKVAGTEEG-ITSLQMDIKITGINEEIMRVALGQAKEGRLHILGEMAK 542
Query: 237 VI 238
I
Sbjct: 543 AI 544
Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats.
Identities = 32/224 (14%), Positives = 65/224 (29%), Gaps = 19/224 (8%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRST 70
R++ L +++ A+G+ +G+T +L T + V + E
Sbjct: 16 RKLVLETGKIARQADGAIFATYGETTVLATVVSAKSVKPGVDFFPLTVNYQEKAFAAGRI 75
Query: 71 GNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAI 130
GR R + R+I R +R + Q+I+ + ++
Sbjct: 76 P--GGYFKREGRPSERETLVSRLIDRPIRPLFPEGYRNETQVIVTVLAHDLENDPDILSM 133
Query: 131 TGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDAN 190
+ A G V A + G ++ E +D
Sbjct: 134 VASSAA-------------LTLSGVPFMGPVGAARVAYVNGQYKINPTLDEVKDTALDLV 180
Query: 191 FVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
T ++ V+ A+ S+D + +I
Sbjct: 181 VAGTSD-AVLMVESEAKE--LSEDVMLGAVMAGHSSFQPVIDAI 221
>gi|77919161|ref|YP_356976.1| polynucleotide phosphorylase/polyadenylase [Pelobacter carbinolicus
DSM 2380]
gi|123574179|sp|Q3A4A1|PNP_PELCD RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|77545244|gb|ABA88806.1| polynucleotide phosphorylase/cytidylate kinase [Pelobacter
carbinolicus DSM 2380]
Length = 699
Score = 162 bits (409), Expect = 4e-38, Method: Composition-based stats.
Identities = 45/242 (18%), Positives = 90/242 (37%), Gaps = 18/242 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
+R+ GR +N +R I+ + A GS L G+T L A L +E+ +++ +
Sbjct: 312 VRIDGRDKNTIRPITCEIGLLPRAHGSALFTRGETQALVAAALGTSKDEQRMDNVQSMEF 371
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P G R R+ G R++ V+ + +
Sbjct: 372 KKFMLHYNFPPFCVGETSMRLFPGRREIGHGML----AERSIAQVLPNHDDFPYTLRVVS 427
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
D+++++G + A++ GA +AL D + + + + +G +
Sbjct: 428 DILESNGSSSMASVCGASLALMDAGVPVSEAVAGIAMGLIKEGDDIVVLSD--------- 478
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T G I +Q + S++ L A++ ++ +
Sbjct: 479 ILGDEDHLGDMDFKVTGTREG-ITALQMDIKIKGVSKEIMQQALEQAREGRLHILDKMAE 537
Query: 237 VI 238
I
Sbjct: 538 AI 539
Score = 111 bits (278), Expect = 7e-23, Method: Composition-based stats.
Identities = 46/231 (19%), Positives = 84/231 (36%), Gaps = 27/231 (11%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVP----MWIRNTKHGWITAEYGMLPR 68
++L +++ A+G+ +V FG T +L TA +++ + + G +P
Sbjct: 15 LTLETGKMARQADGAVVVSFGGTKVLCTAVSAKQMREGQSFFPLTVNYQEKFYAGGKIPG 74
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
S R + R + R+I R LR + + QI+ + T
Sbjct: 75 SFFRRERGA------TERETLVCRLIDRPLRPLFPKGYMFETQIMPTVISVDEQNDPDTL 128
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+ GA A G VAA+ G + G I + + + D+D
Sbjct: 129 AMVGASAA-------------IAVSDIPFDGPVAAVRVGRVEGNLIANPTIEQRAESDMD 175
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
+ I+ V+ E S+ L A + I LI +Q +++
Sbjct: 176 IIVSGSRD-AIIMVE--GETRFISEQEMLDALFFAHEAIQPLIDVQLELVK 223
>gi|319778373|ref|YP_004129286.1| Polyribonucleotide nucleotidyltransferase [Taylorella equigenitalis
MCE9]
gi|317108397|gb|ADU91143.1| Polyribonucleotide nucleotidyltransferase [Taylorella equigenitalis
MCE9]
Length = 733
Score = 162 bits (409), Expect = 5e-38, Method: Composition-based stats.
Identities = 51/242 (21%), Positives = 95/242 (39%), Gaps = 18/242 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +R IS+ V GS L G+T L ATL +E++ +
Sbjct: 320 RIDGRDTRSVRPISIRLGVLPRTHGSALFTRGETQALVIATLGTKQDEQIVDSVMGEVRE 379
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y M P +TG + + R+ G + RAL + + I + +
Sbjct: 380 HFMLHYNMPPFATGEVGRFGSPKRREIGHGRL----AKRALIATLPNQDDFQYTIRLVSE 435
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ G +A+ D +ED + + +G+ A+ +
Sbjct: 436 ITESNGSSSMASVCGGSLAMMDAGVPVEDHVAGVAMGLIKEGNKFAVLTD---------I 486
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T+ G I +Q + +++ L AK+ ++ K+
Sbjct: 487 LGDEDHLGDMDFKVAGTEKG-ITALQMDIKIQGINKEIMQVALAQAKEGRLHILGKMKEA 545
Query: 238 IS 239
IS
Sbjct: 546 IS 547
Score = 79.1 bits (193), Expect = 4e-13, Method: Composition-based stats.
Identities = 35/234 (14%), Positives = 78/234 (33%), Gaps = 31/234 (13%)
Query: 13 EISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT----KHGWITAEYGMLP 67
++++ +++ A G+ +V G T +L T ++ + + G +P
Sbjct: 15 DVTIETGEIARQASGAVVVTMGGTVVLATVVAAKEAKAGQDFFPLTVDYVEKSYAAGRIP 74
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R G+ + R+I R LR + Q+II + +
Sbjct: 75 GGYFKR------EGKPTEKETLTSRLIDRPLRPLFPEGFYNEVQVIIHVLSVDPEIDPDI 128
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
A++ G+ A G + A G + G +++ + D+
Sbjct: 129 ASMIGSSAA-------------LSISGVPFDGPIGAARVGYINGQYVLNPSESQIKDSDM 175
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKD----RIADLIKLQKDV 237
D T+ ++ V+ A++ S++ + + I + L K
Sbjct: 176 DLVVAGTEQ-AVLMVESEAKQ--LSEEIMLGGVVFGHEQLQLAINAIHDLVKQA 226
>gi|296284093|ref|ZP_06862091.1| ribonuclease PH [Citromicrobium bathyomarinum JL354]
Length = 237
Score = 162 bits (409), Expect = 5e-38, Method: Composition-based stats.
Identities = 123/239 (51%), Positives = 162/239 (67%), Gaps = 2/239 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR SGR +QMR IS+ +K+AEGSCL+ FGDT +L TA++E VP W+R GW+T
Sbjct: 1 MRPSGRAPDQMRAISIETGFTKHAEGSCLISFGDTRVLCTASVENSVPPWMRGKGAGWVT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
EY MLPR+T R REA G+Q GR+QEIQR+IGR+LR+VVD+ LG RQI +DCDVIQ
Sbjct: 61 GEYSMLPRATHTRGSREAARGKQSGRTQEIQRLIGRSLRAVVDMKKLGERQITLDCDVIQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTAAI+GAWVAL + ++ L + G +AAISCG+ G P++DLDY
Sbjct: 121 ADGGTRTAAISGAWVALRLAIDGLKKS--GAILEDPITGKIAAISCGVYKGTPVLDLDYD 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
EDS+ D DANFV+ + G I EVQ +AE A + ++ +L LA+ ++ K Q +
Sbjct: 179 EDSSADADANFVLIEGGKIAEVQATAEGAAYDEEALLRLLRLAQMGCGEIFKAQDAAVK 237
>gi|255029953|ref|ZP_05301904.1| ribonuclease PH [Listeria monocytogenes LO28]
Length = 244
Score = 162 bits (409), Expect = 5e-38, Method: Composition-based stats.
Identities = 107/238 (44%), Positives = 154/238 (64%), Gaps = 1/238 (0%)
Query: 5 GRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYG 64
GR+ N +R I +T + EGS L+ G+T ++ +A++E KVP ++R GWI+AEY
Sbjct: 1 GRESNALRNIEVTPDYLMHPEGSVLIASGNTKVICSASVETKVPPFMRGEGRGWISAEYS 60
Query: 65 MLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGG 124
MLPR+T R RE+ G+ GR+ EIQR+IGRALR+VVDL ALG R I +DCDVIQADGG
Sbjct: 61 MLPRATNTRNIRESSKGKVTGRTMEIQRLIGRALRAVVDLDALGERTIWLDCDVIQADGG 120
Query: 125 TRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDST 184
TRTA+ITGA++A+ + +++ F V A + G ++DL+Y EDS
Sbjct: 121 TRTASITGAFIAMVMAIAKLDEAVP-FAKFPVKDFLAATSVGVLEEGGTVLDLNYVEDSA 179
Query: 185 IDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNEV 242
VD N +MT SG VE+QG+ E ATFS+ ++ L K I++LI++QK+ + ++V
Sbjct: 180 AQVDMNIIMTGSGAFVELQGTGEEATFSETELAELIALGKKGISELIEIQKETLGDKV 237
>gi|217976462|ref|YP_002360609.1| Polyribonucleotide nucleotidyltransferase [Methylocella silvestris
BL2]
gi|254782729|sp|B8EP09|PNP_METSB RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|217501838|gb|ACK49247.1| Polyribonucleotide nucleotidyltransferase [Methylocella silvestris
BL2]
Length = 714
Score = 162 bits (409), Expect = 5e-38, Method: Composition-based stats.
Identities = 49/242 (20%), Positives = 94/242 (38%), Gaps = 18/242 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
+R+ GR +R I + A GS L G+T L ATL +E+ + T
Sbjct: 315 VRIDGRDLKTVRPILAEVGILPRAHGSALFTRGETQALVVATLGTGEDEQFVDSLEGTYK 374
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P S G + + R+ G + RA+R ++ +A I I
Sbjct: 375 ERFLLHYNFPPYSVGETGRMGSPGRREIGHGKL----AWRAVRPMLPTAAEFPYTIRIVS 430
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
++ +++G + A + G+ +AL D ++ + + +L+G A+
Sbjct: 431 EITESNGSSSMATVCGSSLALMDAGVPLKRPTAGIAMGLILEGERFAVLSD--------- 481
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T+ G + +Q + A +++ L+ AK ++
Sbjct: 482 ILGDEDHLGDMDFKVAGTEEG-VTSLQMDIKVAGITEEIMKVALDQAKGGRLHILGEMSK 540
Query: 237 VI 238
+
Sbjct: 541 AL 542
Score = 105 bits (261), Expect = 6e-21, Method: Composition-based stats.
Identities = 33/228 (14%), Positives = 70/228 (30%), Gaps = 27/228 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTKHGWITAEYGML 66
R+++L +++ A+G+ L +G+T +L T T + + + + G +
Sbjct: 14 RKLTLETGRIARQADGAVLATYGETTVLATVVSARTPKPGIDFFPLTVNYQEKAFAAGRI 73
Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
P R GR + + R+I R +R + Q+++ +
Sbjct: 74 PGGYFKR------EGRPSEKETLVSRLIDRPIRPLFPEGYRNDTQVVVTVLSHDLENDPD 127
Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
A+ A G V G + G ++ E
Sbjct: 128 ILALVATSAA-------------LTISGIPFMGPVGGARVGYINGALKLNPTVDELKESA 174
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
+D T ++ V+ A+ S+ + +I
Sbjct: 175 LDLVVAGTGD-AVLMVESEAKE--LSETLMLEAVMTGHRGFQPVIDAI 219
>gi|262193889|ref|YP_003265098.1| ribonuclease PH [Haliangium ochraceum DSM 14365]
gi|262077236|gb|ACY13205.1| ribonuclease PH [Haliangium ochraceum DSM 14365]
Length = 250
Score = 162 bits (409), Expect = 5e-38, Method: Composition-based stats.
Identities = 110/230 (47%), Positives = 153/230 (66%), Gaps = 5/230 (2%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R GR+ NQ+R + +T +YAEGS L+K G+T +L A++EE+VP ++ GW+TA
Sbjct: 3 RPDGREANQLRPVEITTGFQQYAEGSALIKSGNTWVLCAASIEERVPPFLAGRGTGWVTA 62
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
EY MLPRST R R + GGR +EIQR+IGR+LR+ V++ ALG R I IDCDV+QA
Sbjct: 63 EYAMLPRSTHTRSGRHS-----GGRGKEIQRLIGRSLRAAVNMEALGERAITIDCDVLQA 117
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
DGGTR A+ITG +VAL + + + VL+ +AAIS G++ G +DL Y E
Sbjct: 118 DGGTRVASITGGYVALALAVDGLVRAGLVASVESVLREPIAAISVGIIDGEARLDLPYAE 177
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231
DST +VD N VMT+SGH+VEVQG+ E+ TFS+ ++L+LA + + L
Sbjct: 178 DSTAEVDMNVVMTESGHLVEVQGTGEQGTFSRAQLDSLLDLATEGVKRLC 227
>gi|217970113|ref|YP_002355347.1| polynucleotide phosphorylase/polyadenylase [Thauera sp. MZ1T]
gi|217507440|gb|ACK54451.1| Polyribonucleotide nucleotidyltransferase [Thauera sp. MZ1T]
Length = 699
Score = 162 bits (409), Expect = 5e-38, Method: Composition-based stats.
Identities = 46/242 (19%), Positives = 93/242 (38%), Gaps = 18/242 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +R I + V GS L G+T L ATL +E++ I
Sbjct: 316 RIDGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQALVVATLGTGRDEQIIDAIAGEYKE 375
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P TG + R+ G + R+L +++ S + + +
Sbjct: 376 RFLLHYNFPPFCTGETGRFGITKRREVGHGRL----AKRSLVAMLPKPEEFSYTVRVVSE 431
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ G +A+ D +++ + + G+ A+ +
Sbjct: 432 ITESNGSSSMASVCGGSLAMMDAGVPLKNHVAGIAMGLIKDGNRFAVLTD---------I 482
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T++G I +Q + +++ A L AK+ ++ L +
Sbjct: 483 LGDEDHLGDMDFKVAGTENG-ITGLQMDIKIQGITKEIMHAALEQAKEGRLHILGLMQQA 541
Query: 238 IS 239
+
Sbjct: 542 LG 543
Score = 98.4 bits (243), Expect = 7e-19, Method: Composition-based stats.
Identities = 38/231 (16%), Positives = 78/231 (33%), Gaps = 27/231 (11%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT----KHGWITAEYGMLPR 68
++L V++ A G+ +V +T +L T ++ + G +P
Sbjct: 16 VTLETGEVARQAGGAVIVNMDETVVLATVVGAKEARPGQDFFPLTVDYVEKFYAAGRIPG 75
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
R GR + R+I R +R + + Q+I+ + + +
Sbjct: 76 GFFKR------EGRPSEKEILTSRLIDRPIRPLFPDGFMNEVQVIVTVLSLNPEIDSDIP 129
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+ GA A G V A G L G I++ E + ++
Sbjct: 130 AMIGASAA-------------LAISGLPFNGPVGAARVGYLDGKYILNPTATELQSSAMN 176
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
T + ++ V+ A+ +D + +++ IK D++
Sbjct: 177 LVVAGTQT-AVLMVESEAQE--LPEDVMLGAVVFGHEQMQTAIKAINDLVE 224
>gi|296160625|ref|ZP_06843440.1| polyribonucleotide nucleotidyltransferase [Burkholderia sp. Ch1-1]
gi|295889151|gb|EFG68954.1| polyribonucleotide nucleotidyltransferase [Burkholderia sp. Ch1-1]
Length = 716
Score = 162 bits (409), Expect = 5e-38, Method: Composition-based stats.
Identities = 47/242 (19%), Positives = 91/242 (37%), Gaps = 18/242 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHG 57
R+ GR +R I + V GS L G+T L AT +E+ +
Sbjct: 322 RIDGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQALVVATLGTKGDEQNIDALEGEYRE 381
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y M P +TG + + R+ G + RAL + + + I + +
Sbjct: 382 RFMLHYNMPPFATGETGRVGSPKRREIGHGRL----AKRALAACLPSADEFGYSIRVVSE 437
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ G +AL D M+ + +L+G+ A+ +
Sbjct: 438 ITESNGSSSMASVCGGCLALMDAGVPMKAHVAGIAMGLILEGNKFAVLTD---------I 488
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T+ G + +Q + +++ L AK+ ++
Sbjct: 489 LGDEDHLGDMDFKVAGTEQG-VTALQMDIKIQGITKEIMQVALAQAKEGRLHILGKMTSA 547
Query: 238 IS 239
+S
Sbjct: 548 VS 549
Score = 90.3 bits (222), Expect = 2e-16, Method: Composition-based stats.
Identities = 36/233 (15%), Positives = 73/233 (31%), Gaps = 31/233 (13%)
Query: 13 EISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT----KHGWITAEYGMLP 67
++ L +++ A G+ +V DT +L T + + T G +P
Sbjct: 17 KVRLETGEIARQASGAVIVDVEDTVVLATVVGAKTAKPGQDFFPLTVDYLEKTYAAGKIP 76
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R GR I R+I R LR + Q++I + +
Sbjct: 77 GGFFRR------EGRPSEGETLISRLIDRPLRPLFPEGFYNEVQVVIHVLSLNPEIPADI 130
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
A+ GA A G V A + +++ + +
Sbjct: 131 PALIGASAA-------------LAVSGLPFNGPVGAARVAYINNEYVLNPTRPQMKESAL 177
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKD----RIADLIKLQKD 236
D T+ ++ V+ A++ S++ + + I + L ++
Sbjct: 178 DLIVAGTER-AVLMVESEAQQ--LSEEVMLGGVVFGHEQMQIAIDAIHDLVRE 227
>gi|85712994|ref|ZP_01044032.1| Polynucleotide phosphorylase [Idiomarina baltica OS145]
gi|85693163|gb|EAQ31123.1| Polynucleotide phosphorylase [Idiomarina baltica OS145]
Length = 713
Score = 161 bits (408), Expect = 5e-38, Method: Composition-based stats.
Identities = 45/240 (18%), Positives = 90/240 (37%), Gaps = 10/240 (4%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R+ GR + +R IS+ V GS L G+T L TATL + + G T+
Sbjct: 314 RIDGRDPDMVRAISVATGVLPRTHGSALFTRGETQALVTATLGTDRDAQMIDELTGTSTS 373
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
+ + V + G R R+ R +++V+ + + ++ ++
Sbjct: 374 RFLLHYNFPPYCVGETGMVGAPKRREIGHGRLAKRGIQAVMPSHEEFPYTVRVVSEITES 433
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
+G + A++ G+ +AL D ++ + V +G + + E
Sbjct: 434 NGSSSMASVCGSSLALMDAGVPIKSSVAGIAMGLVKEGDKHVVLSD---------ILGDE 484
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
D D+D + G I +Q + ++D + L AK ++ + + I
Sbjct: 485 DHLGDMDFKVAGNNEG-ITALQMDIKIDGITRDIMESALGQAKAARLHILSVMDEAIGEH 543
Score = 93.0 bits (229), Expect = 4e-17, Method: Composition-based stats.
Identities = 32/228 (14%), Positives = 69/228 (30%), Gaps = 27/228 (11%)
Query: 14 ISLTRRV-SKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGMLPR 68
++L V ++ A + + DT +L + E + + T G +P
Sbjct: 15 VTLETGVVARQATAAVMASMDDTTVLVSVVAKKEAREGQDFFPLTVNYQEKTYAAGKIPG 74
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
R GR R+I R +R + + Q++ +
Sbjct: 75 GFFKR------EGRPSENETLTSRLIDRPIRPLFPEGFMNEVQVVATVVSVNPQVSPDLV 128
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+ G A G + A G++ +++ E + +D
Sbjct: 129 AMIGTSAA-------------LAISGVPFNGPIGAARVGVINDEYVLNPTQDELTESKLD 175
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
T ++ V+ +E S+D + + + +I +
Sbjct: 176 LVVAGTQQ-AVLMVE--SEANLLSEDTMLGAVMFGHESMQVVIDAINE 220
>gi|188996726|ref|YP_001930977.1| Polyribonucleotide nucleotidyltransferase [Sulfurihydrogenibium sp.
YO3AOP1]
gi|254782742|sp|B2V900|PNP_SULSY RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|188931793|gb|ACD66423.1| Polyribonucleotide nucleotidyltransferase [Sulfurihydrogenibium sp.
YO3AOP1]
Length = 703
Score = 161 bits (408), Expect = 5e-38, Method: Composition-based stats.
Identities = 47/245 (19%), Positives = 81/245 (33%), Gaps = 19/245 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIR-----NTK 55
+R+ GR+ ++R I + V GS + G T T TL I
Sbjct: 311 IRIDGRKPEEIRPIWIKVGVFPRNHGSAIFTRGQTQAFVTVTLGSPSEGQIEESIEAGET 370
Query: 56 HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115
Y P STG VS R+ G RAL ++ I +
Sbjct: 371 LKRFMLHYNFPPFSTGEAKPPRPVSRREIGHGNL----AERALEPLIPSEEEFPYVIRVV 426
Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIV 175
D+++++G T A + G +AL D M+ + + +
Sbjct: 427 SDILESNGSTSMATVCGGSLALFDAGVPMKKHVAGIAMGLIKSEDKFVVLSD-------- 478
Query: 176 DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
+ ED D+D T G + +Q + +++ L A++ ++ L
Sbjct: 479 -ILGDEDHLGDMDFKVAGTRDG-VTSIQMDIKVKGLTREILQKALEQAREGRNYILDLMY 536
Query: 236 DVISN 240
I
Sbjct: 537 QAIPE 541
Score = 116 bits (290), Expect = 2e-24, Method: Composition-based stats.
Identities = 46/229 (20%), Positives = 79/229 (34%), Gaps = 27/229 (11%)
Query: 13 EISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRN----TKHGWITAEYGMLP 67
S+ +K A G+ +V+ GDT +L A + E+ I ++ YG +P
Sbjct: 14 PYSIETGYFAKQANGAVIVRQGDTAVLVAAVMSEEPQADIDFLPLTVEYREKYYAYGKIP 73
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R G+ R + R I R +R + I
Sbjct: 74 GGFVKR------EGKPSEREILVARNIDRPIRPLFPKGFYNDVIITAYTLSADDQYDPDV 127
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
I GA ALH +G +A + + G IV+ Y + + D+
Sbjct: 128 LGIVGASAALH-------------ISDIPFEGPIAGVRVCRVDGQFIVNPTYQQKAKSDL 174
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ + IV V+G A+ ++ + I LI+LQ++
Sbjct: 175 EIVVAGSKD-AIVMVEGGAKEVP--EEVILEAMLFGHQEIKKLIELQEE 220
>gi|154244245|ref|YP_001415203.1| polynucleotide phosphorylase/polyadenylase [Xanthobacter
autotrophicus Py2]
gi|226704833|sp|A7IC03|PNP_XANP2 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|154158330|gb|ABS65546.1| Polyribonucleotide nucleotidyltransferase [Xanthobacter
autotrophicus Py2]
Length = 730
Score = 161 bits (408), Expect = 5e-38, Method: Composition-based stats.
Identities = 46/242 (19%), Positives = 89/242 (36%), Gaps = 18/242 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
+R+ GR +R I + A GS L G+T L ATL +E+ + T
Sbjct: 317 IRIDGRDVYTVRPIVSEVGILPRAHGSALFTRGETQALVVATLGTGEDEQFIDSLEGTYK 376
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P S G + + R+ G + RA+ ++ + +
Sbjct: 377 EHFLLHYNFPPFSVGETGRMGSPGRREIGHGKL----AWRAIHPMLPAKHEFPYTLRVVS 432
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
++++++G + A + G +AL D + + +L+G A+
Sbjct: 433 EILESNGSSSMATVCGTSLALMDAGVPLRRPVAGIAMGLILEGEKFAVLSD--------- 483
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T+ G + +Q + A +++ L AKD ++
Sbjct: 484 ILGDEDHLGDMDFKVAGTEQG-VTSLQMDIKIAGITEEIMKVALTQAKDGRVHILGEMAK 542
Query: 237 VI 238
+
Sbjct: 543 AL 544
Score = 105 bits (261), Expect = 6e-21, Method: Composition-based stats.
Identities = 32/235 (13%), Positives = 72/235 (30%), Gaps = 28/235 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----HGWITAEYGML 66
R ++L +++ A+GS L +GDT +L T + + T G +
Sbjct: 14 RTLTLETGKMARQADGSVLATYGDTKVLATVVSAREPKPGQDFFPLTVNYQEKTYAAGRI 73
Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
P R GR + + R+I R +R + Q++I +
Sbjct: 74 PGGYFKR------EGRPSEKETLVSRLIDRPIRPLFPEGYKCDTQVVITVLAHDLENDPD 127
Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
+ + + G V A G + +++ E
Sbjct: 128 V-------------VAMVAASAALTLSGVPFMGPVGAARVGFIDNEYVLNPTVDEVKESA 174
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
++ T ++ V+ A+ ++ + +I+ ++ +
Sbjct: 175 LELVVAGTGD-AVLMVESEAKE--LPEEIMLGAVMFGHRHFQPVIEAIIK-LAEK 225
>gi|284108781|ref|ZP_06386446.1| polyribonucleotide nucleotidyltransferase [Candidatus Poribacteria
sp. WGA-A3]
gi|283829855|gb|EFC34146.1| polyribonucleotide nucleotidyltransferase [Candidatus Poribacteria
sp. WGA-A3]
Length = 700
Score = 161 bits (408), Expect = 5e-38, Method: Composition-based stats.
Identities = 47/244 (19%), Positives = 87/244 (35%), Gaps = 18/244 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
+R GR + +R I+ + GS L G+T L TL +E+ +
Sbjct: 311 VRADGRGASDIRPITCETSILPRTHGSALFTRGETQSLAVVTLGTSDDEQRIDALEGEYF 370
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P S G + R+ G + RAL+SV+ I I
Sbjct: 371 RNFMLHYNFPPFSVGEARPLRSPGRREVGHGKL----AERALKSVLPDKEAFPYTIRIVS 426
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
D+++++G + A + G +A+ D ++ + + G I
Sbjct: 427 DILESNGSSSMATVCGGTLAMMDAGVPIKKPVAGIAMGLIKDGDRVLILSD--------- 477
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T G I +Q + + D L A+ +++ ++
Sbjct: 478 ILGLEDHLGDMDFKVTGTQEG-ITALQMDIKIEGITIDLMRQALEQARAGRIHILEKMQE 536
Query: 237 VISN 240
+S+
Sbjct: 537 SLSS 540
Score = 94.5 bits (233), Expect = 1e-17, Method: Composition-based stats.
Identities = 44/230 (19%), Positives = 77/230 (33%), Gaps = 27/230 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGML 66
R + L ++K A+G+ L +GDT +L TA L+ V + G +
Sbjct: 12 RTMRLETGRMAKLADGAVLASYGDTMVLATAVSSKILKPDVDFLPLTVNYLEKAYSAGKI 71
Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
P R G + R+I R +R ++ Q+I + +
Sbjct: 72 PGGYFKR------EGAPSEKETLTSRLIDRPIRPLIPKGFSYETQVIASVLSVDQSMTSE 125
Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
IT A A G +A + G + G +V+ + E +
Sbjct: 126 VVGITAASAA-------------LAISDIPFGGPLAGVKIGRVNGQFVVNPNMQELQNSE 172
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
++ T+ I V+ A S+ F L LA I ++ +
Sbjct: 173 LELVVAGTED-AIQMVESGANG--LSESVFLDALALAHSEIKKIVAKIVE 219
>gi|330836568|ref|YP_004411209.1| Polyribonucleotide nucleotidyltransferase [Spirochaeta coccoides
DSM 17374]
gi|329748471|gb|AEC01827.1| Polyribonucleotide nucleotidyltransferase [Spirochaeta coccoides
DSM 17374]
Length = 705
Score = 161 bits (408), Expect = 5e-38, Method: Composition-based stats.
Identities = 44/239 (18%), Positives = 89/239 (37%), Gaps = 7/239 (2%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+R GR+ + +R I+ + GS L G+T L TL + +T G +
Sbjct: 316 VRTDGRKVDDIRPITCEVGLLPMTHGSALFTRGETQSLAVTTLGTASDEQMFDTIDGEKS 375
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
ML + E G R + RAL+++V + + ++++
Sbjct: 376 FSSFMLHYNFPPYSVGETGRLSTGRREIGHGHLAQRALQAIVPPKEKFPYTVRVVSEIME 435
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
++G + A++ G ++L D ++ + + +G A + D+
Sbjct: 436 SNGSSSMASVCGGCLSLMDAGVPIKKPVAGIAMGLITEGEDYA------RYVVLSDILGE 489
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
ED D+D T+ G I Q + A + + L+ AK ++ + +
Sbjct: 490 EDHLGDMDFKVAGTEDG-ITAFQMDIKIAGVTPEIMSKALDQAKRGRLHILDVMGKTLK 547
Score = 84.1 bits (206), Expect = 1e-14, Method: Composition-based stats.
Identities = 37/229 (16%), Positives = 72/229 (31%), Gaps = 27/229 (11%)
Query: 13 EISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----HGWITAEYGMLP 67
E+ ++K A GS + + ++ T + + G +P
Sbjct: 15 ELVFETGKIAKQANGSIYASYEGSAIIATVCCGAAPSEPLDYVPLSVEYNEKYYAAGKIP 74
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R R + + R+I R +R + D + QI+
Sbjct: 75 GGFLKR------EARPKDKEILVSRLIDRPMRPLFDKAFGREIQIVPTVVSSDQANQPDI 128
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
AI A A+ G + A+ ++ G I++ + + + +
Sbjct: 129 IAINAASAAVM-------------ISDIPFAGPIGAVRIALVDGDYIINPTFQQTAQAQL 175
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
D T G I V+G A+ S++ + A+ I L Q +
Sbjct: 176 DIVVSGTRDG-ITMVEGGAKE--VSEEVMLKAIAAAQPVITALCDAQIE 221
>gi|269837582|ref|YP_003319810.1| polyribonucleotide nucleotidyltransferase [Sphaerobacter
thermophilus DSM 20745]
gi|269786845|gb|ACZ38988.1| Polyribonucleotide nucleotidyltransferase [Sphaerobacter
thermophilus DSM 20745]
Length = 790
Score = 161 bits (408), Expect = 5e-38, Method: Composition-based stats.
Identities = 47/243 (19%), Positives = 89/243 (36%), Gaps = 16/243 (6%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R GR+ +++REI + V A GS + G T LT TL EE++ + +
Sbjct: 326 RPDGRRPDEIREIWIETGVLPRAHGSAIFTRGQTQALTVVTLGTTSEEQLLDGLGIEESK 385
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + S R G R+L +V+ + + + +
Sbjct: 386 RYLHHYNFPPFSVGEVRRLRGPSRRDIGHGAL----AERSLLAVLPDEDVFPYTMRVVSE 441
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
++ ++G T A++ G+ +AL D + + + + D+
Sbjct: 442 IVSSNGSTSMASVCGSSLALMDAGVPIRAPVAGVAMGLITDPETG-------RYQILTDI 494
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED+ D+D T G I +Q + + + L A+ ++ V
Sbjct: 495 QGIEDALGDMDFKVAGTAEG-ITGIQMDIKVMGITPEIMREALEQARRGRLYILDKMNAV 553
Query: 238 ISN 240
++
Sbjct: 554 LAQ 556
Score = 106 bits (263), Expect = 4e-21, Method: Composition-based stats.
Identities = 44/230 (19%), Positives = 79/230 (34%), Gaps = 27/230 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT----KHGWITAEYGML 66
R +++ ++ A G+ V++GDT +LTT E + + + G +
Sbjct: 21 RRLTIETGRMAGLAHGAVTVRYGDTLVLTTVVGEREPREGLDFFPLTVDYEEKMYAAGKI 80
Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
P R GR + R+ R +R + Q+I +
Sbjct: 81 PGGFIKR------EGRPTEAAILAARLTDRPIRPLFPKGYKAEVQVITTVLSADQENAPD 134
Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
+I GA AL G V A+ G + G +V+ +
Sbjct: 135 VLSIIGASAALM-------------LSPIPWAGPVGAVRIGDIDGELVVNPTEHQLIDSK 181
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+D T ++ V+ E S+D F + LA D I ++ +Q +
Sbjct: 182 LDMVVAGTAD-AVMMVE--GEADEISEDRFLEAVLLAHDEIKRIVAMQHE 228
>gi|114571545|ref|YP_758225.1| ribonuclease PH [Maricaulis maris MCS10]
gi|122314919|sp|Q0AKA6|RNPH_MARMM RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|114342007|gb|ABI67287.1| RNAse PH [Maricaulis maris MCS10]
Length = 238
Score = 161 bits (408), Expect = 5e-38, Method: Composition-based stats.
Identities = 129/239 (53%), Positives = 164/239 (68%), Gaps = 2/239 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR GR + MREI L VS YAEGSCL +FG TH+L TA++EE VP W+R GW+T
Sbjct: 1 MRPHGRARDAMREIKLEAGVSVYAEGSCLARFGGTHVLCTASIEESVPPWMRGGGKGWVT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPR+T R +REA +G+Q GR+QEIQR+IGR+LR+VVDL ALG RQI IDCDV+Q
Sbjct: 61 AEYGMLPRATHTRSRREATAGKQSGRTQEIQRLIGRSLRAVVDLKALGERQITIDCDVLQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTAAITGAWVAL ++ + S + G +AAISCG++ G +DL+Y
Sbjct: 121 ADGGTRTAAITGAWVALKQATGYLIEE--GLLTSDPVHGQLAAISCGVIDGETRLDLEYE 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
ED + DANFV+TD+G IVE+Q +AE + F + LAK + DL + Q +
Sbjct: 179 EDRRAEADANFVLTDTGGIVEIQATAEDKPIPETDFDLLFALAKAGVVDLCEAQLAALK 237
>gi|254421303|ref|ZP_05035021.1| ribonuclease PH [Synechococcus sp. PCC 7335]
gi|196188792|gb|EDX83756.1| ribonuclease PH [Synechococcus sp. PCC 7335]
Length = 241
Score = 161 bits (408), Expect = 5e-38, Method: Composition-based stats.
Identities = 103/241 (42%), Positives = 152/241 (63%), Gaps = 4/241 (1%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R RQ +Q+R R+ ++Y+ GS L G+T +L TA++ E VP +++++ GW+TA
Sbjct: 5 RPDQRQPDQLRPFKFERQFTQYSAGSVLAHCGNTRVLCTASVLEGVPRFLKDSGQGWLTA 64
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
EY MLP ST R R + GR+QEIQR+IGR+LR+ +D+ ALG R I ID DV+QA
Sbjct: 65 EYRMLPGSTQTRKSR--EFMKLSGRTQEIQRLIGRSLRAALDMEALGERTITIDADVLQA 122
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
DGGTRT +ITGA+VAL D + H+ + L+ +AA S G++ G P +DL+Y E
Sbjct: 123 DGGTRTTSITGAYVALEDAIAHLIKTNELTTS--PLRHQIAATSVGLIEGDPFLDLNYPE 180
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
D D+D N VM + +EVQG+AE +F++ AML A+ I+ L+++QK +S
Sbjct: 181 DFAADIDFNVVMNEKLEFIEVQGTAEAGSFTRSQLNAMLEYAEKGISQLMQIQKATLSES 240
Query: 242 V 242
+
Sbjct: 241 L 241
>gi|119898394|ref|YP_933607.1| polynucleotide phosphorylase/polyadenylase [Azoarcus sp. BH72]
gi|187470932|sp|A1K7B5|PNP_AZOSB RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|119670807|emb|CAL94720.1| polyribonucleotide nucleotidyltransferase [Azoarcus sp. BH72]
Length = 699
Score = 161 bits (408), Expect = 6e-38, Method: Composition-based stats.
Identities = 51/242 (21%), Positives = 93/242 (38%), Gaps = 18/242 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +R I + V GS L G+T L ATL +E++ I
Sbjct: 316 RIDGRDTRTVRPIDIRVGVLPRTHGSALFTRGETQALVVATLGTGRDEQIIDAIAGEYKE 375
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P STG + R+ G + RAL +++ S I + +
Sbjct: 376 RFMLHYNFPPFSTGETGRFGVTKRREIGHGRL----AKRALVAMLPKGEDFSYTIRVVSE 431
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ G +AL D M+D + + G+ A+ +
Sbjct: 432 ITESNGSSSMASVCGGSLALMDAGVPMKDHVAGIAMGLIKDGNRFAVLTD---------I 482
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T++G + +Q + +++ L A + ++K KD
Sbjct: 483 LGDEDHLGDMDFKVAGTENG-VTALQMDIKIQGITKEIMQVALAQAGEGRLHILKQMKDA 541
Query: 238 IS 239
+
Sbjct: 542 LG 543
Score = 94.5 bits (233), Expect = 1e-17, Method: Composition-based stats.
Identities = 34/231 (14%), Positives = 72/231 (31%), Gaps = 27/231 (11%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT----KHGWITAEYGMLPR 68
++L V++ A G+ +V DT +L T + + G +P
Sbjct: 16 VTLETGEVARQAGGAVIVNVDDTVVLATVVAAKDAKPGQDFFPLTVDYVEKFYAAGRIPG 75
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
R GR + R+I R +R + Q+I+ + +
Sbjct: 76 GFFKR------EGRPTEKETLTSRLIDRPIRPLFPEGFYNEVQVIVTVLSLNPEVDADIP 129
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+ A A G + A G G +++ + T ++
Sbjct: 130 AMIAASAA-------------LSISGIPFDGPIGAARVGYADGQYLLNPTVEQLKTSKLN 176
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
T S ++ V+ +E S+ + +++ I +++
Sbjct: 177 LVVAGTAS-AVLMVE--SEADELSEQVMLGAVVFGHEQMQAAINAINELVE 224
>gi|78222801|ref|YP_384548.1| polynucleotide phosphorylase/polyadenylase [Geobacter
metallireducens GS-15]
gi|123729281|sp|Q39VA1|PNP_GEOMG RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|78194056|gb|ABB31823.1| 3' exoribonuclease:RNA binding S1:KH, type 1 [Geobacter
metallireducens GS-15]
Length = 697
Score = 161 bits (408), Expect = 6e-38, Method: Composition-based stats.
Identities = 47/242 (19%), Positives = 87/242 (35%), Gaps = 18/242 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +R I+ + GS L G+T L ATL +E+ +
Sbjct: 313 RIDGRDTKTIRPITSEVGILPRVHGSALFTRGETQALVAATLGTSSDEQRIDSLYGESRK 372
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G R A R+ G RAL V+ I I D
Sbjct: 373 RFMLHYNFPPFSVGETSFRLAPGRREIGHGYL----AERALERVLPKHDDFPYTIRIVSD 428
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+++++G + A++ G +++ D + + + +G AI +
Sbjct: 429 ILESNGSSSMASVCGGALSMMDAGVPISAPVAGIAMGLIKEGDDIAILSD---------I 479
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T +G + +Q + +++ L AK+ ++ +
Sbjct: 480 LGDEDHLGDMDFKVAGTSTG-VTAIQMDIKITGVTREIMGKALEQAKEGRLHILGKMAEA 538
Query: 238 IS 239
++
Sbjct: 539 LA 540
Score = 101 bits (252), Expect = 7e-20, Method: Composition-based stats.
Identities = 42/230 (18%), Positives = 77/230 (33%), Gaps = 27/230 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTKHGWITAEYGML 66
R I++ ++K A G+ +V G+T +L TA + +E + + G +
Sbjct: 13 RTITIATGKMAKQASGAVMVSCGETMVLVTAVALKSAKEGQDFFPLTVNYQEKAYAGGKI 72
Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
P R GR R I R +R + + L QI+ D
Sbjct: 73 PGGFFKR------EGRPTENETLTCRFIDRPIRPLFPENFLNDTQIMATVVSADQDNDPG 126
Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
A+ GA A G +A + G + G I + + + D
Sbjct: 127 ILAMIGASAA-------------LEVSDIPFFGPIAGVKVGRVDGKFICNPTAEQLAASD 173
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
++ + ++ V+G A A S+ + + +I Q +
Sbjct: 174 LEVVVAASRD-AVIMVEGGA--AEISEADLLEAIFFGHASVQPIIDAQIE 220
>gi|85706001|ref|ZP_01037097.1| polyribonucleotide nucleotidyltransferase [Roseovarius sp. 217]
gi|85669589|gb|EAQ24454.1| polyribonucleotide nucleotidyltransferase [Roseovarius sp. 217]
Length = 713
Score = 161 bits (408), Expect = 6e-38, Method: Composition-based stats.
Identities = 45/242 (18%), Positives = 89/242 (36%), Gaps = 17/242 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR+ +++R I + GS L G+T L TL +E+ +
Sbjct: 318 RIDGRRLDEIRSIVCETGLLPRTHGSSLFTRGETQALVVTTLGTGDDEQFIDALHGNFKS 377
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + R+ G + RAL++V+ + I + +
Sbjct: 378 NFLLHYNFPPYSVGEAGRVGPPGRREIGHGKL----AWRALQAVLPPATDFPYTIRLVSE 433
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ G +++ D ++ + VL+ + + D+
Sbjct: 434 ITESNGSSSMASVCGGSLSMMDAGVPLKTSVAGVAMGLVLEEDGS--------FAILSDI 485
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T G I +Q + A + + L AK ++
Sbjct: 486 LGDEDHLGDMDFKVAGTADG-ITSLQMDIKVAGITPEIMKKALEQAKAGRLHILGEMDKA 544
Query: 238 IS 239
+S
Sbjct: 545 LS 546
Score = 102 bits (254), Expect = 4e-20, Method: Composition-based stats.
Identities = 26/228 (11%), Positives = 63/228 (27%), Gaps = 25/228 (10%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGN 72
++L +++ A+G+ + G+T ++ T ++ E
Sbjct: 16 LTLETGKIARQADGTVIATLGETSVMANVTFAKEAKPGQDFFPLTVHYQERYYAAGKVP- 74
Query: 73 RVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITG 132
R + R+I R +R + ++ A+
Sbjct: 75 -GGFFKREARPSEKETLTARLIDRPIRPLFVPGFKHETLVMCTVLSHDLVNDPDIVAMIA 133
Query: 133 AWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDST------ID 186
A G +A G + G I++ + +
Sbjct: 134 TSAA-------------LTISGAPFMGPIAGCRVGFVDGEYILNPEIDDMHNLRNNPEQR 180
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
+D T ++ V+ A +++ + A ++I + L
Sbjct: 181 LDLVVAGTKD-AVMMVESEAYE--LTEEEMLGAVTFAHEQIQPVCDLI 225
>gi|323525432|ref|YP_004227585.1| polyribonucleotide nucleotidyltransferase [Burkholderia sp.
CCGE1001]
gi|323382434|gb|ADX54525.1| polyribonucleotide nucleotidyltransferase [Burkholderia sp.
CCGE1001]
Length = 715
Score = 161 bits (408), Expect = 6e-38, Method: Composition-based stats.
Identities = 47/242 (19%), Positives = 91/242 (37%), Gaps = 18/242 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHG 57
R+ GR +R I + V GS L G+T L AT +E+ +
Sbjct: 322 RIDGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQALVVATLGTKGDEQNIDALEGEYRE 381
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y M P +TG + + R+ G + RAL + + + I + +
Sbjct: 382 RFMLHYNMPPFATGETGRVGSPKRREIGHGRL----AKRALAACLPSADEFGYSIRVVSE 437
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ G +AL D M+ + +L+G+ A+ +
Sbjct: 438 ITESNGSSSMASVCGGCLALMDAGVPMKAHVAGIAMGLILEGNKFAVLTD---------I 488
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T+ G + +Q + +++ L AK+ ++
Sbjct: 489 LGDEDHLGDMDFKVAGTEQG-VTALQMDIKIQGITKEIMQVALAQAKEGRMHILGKMTSA 547
Query: 238 IS 239
+S
Sbjct: 548 VS 549
Score = 94.1 bits (232), Expect = 1e-17, Method: Composition-based stats.
Identities = 37/233 (15%), Positives = 73/233 (31%), Gaps = 27/233 (11%)
Query: 13 EISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT----KHGWITAEYGMLP 67
+ L +++ A G+ +V DT +L T + + T G +P
Sbjct: 17 NVRLETGEIARQASGAVIVDVEDTVVLATVVGAKTAKPGQDFFPLTVDYLEKTYAAGKIP 76
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R GR I R+I R LR + Q++I + D
Sbjct: 77 GGFFRR------EGRPSEGETLISRLIDRPLRPLFPEGFYNEVQVVIHVLSLNPDIPADI 130
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
A+ GA A G V A + +++ + +
Sbjct: 131 PALIGASAA-------------LAVSGLPFNGPVGAARVAYINNEYVLNPTRPQMKDSAL 177
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
D T+ ++ V+ A++ S++ + +++ I D++
Sbjct: 178 DLVVAGTER-AVLMVESEAQQ--LSEEVMLGAVVFGHEQMQVAIDAIHDLVRE 227
>gi|332289145|ref|YP_004419997.1| ribonuclease PH [Gallibacterium anatis UMN179]
gi|330432041|gb|AEC17100.1| ribonuclease PH [Gallibacterium anatis UMN179]
Length = 239
Score = 161 bits (408), Expect = 6e-38, Method: Composition-based stats.
Identities = 123/241 (51%), Positives = 166/241 (68%), Gaps = 2/241 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR + R + MR I +TR +K+AEGS L++FGDT +L AT+EE VP +++ GWIT
Sbjct: 1 MRPNNRDNHAMRPIKITRHYTKHAEGSVLIEFGDTKVLCNATVEETVPRFLKGQNQGWIT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPR+T R +REA G+Q GR+ EIQR+IGR+LR++VDL+ LG R I +DCDVIQ
Sbjct: 61 AEYGMLPRATNVRTQREAAKGKQSGRTMEIQRLIGRSLRAMVDLTLLGERTITLDCDVIQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTAAI+G+ VALHD +Q + D +K VAA+S G++ + DL+Y
Sbjct: 121 ADGGTRTAAISGSAVALHDAIQTLLDK--GLIKQNPIKNLVAAVSVGIVEQQQLCDLEYV 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
EDS + D N VMTD G ++EVQG+AE FS D A+L+LAK IA + + QK + +
Sbjct: 179 EDSNAETDMNVVMTDDGRMIEVQGTAEGEPFSHDELLALLDLAKQGIAQINQAQKAALQD 238
Query: 241 E 241
+
Sbjct: 239 K 239
>gi|49473865|ref|YP_031907.1| polynucleotide phosphorylase/polyadenylase [Bartonella quintana
str. Toulouse]
gi|81647260|sp|Q6G0P7|PNP_BARQU RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|49239368|emb|CAF25701.1| Polyribonucleotide nucleotidyltransferase [Bartonella quintana str.
Toulouse]
Length = 733
Score = 161 bits (408), Expect = 6e-38, Method: Composition-based stats.
Identities = 43/243 (17%), Positives = 86/243 (35%), Gaps = 18/243 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR + +R I + GS L G+T + ATL +E+ +
Sbjct: 317 RIDGRDLSTVRPIQSEVGILPRTHGSALFTRGETQAIVVATLGTGEDEQYVDSLTGMYKE 376
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + + R+ G + RA+ ++ I +
Sbjct: 377 TFLLHYNFPPFSVGETGRLGSPGRREIGHGKL----AWRAIHPMLPTKESFPYTIRAVSE 432
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A + G +AL D + + + +G AI +
Sbjct: 433 ITESNGSSSMATVCGTSLALMDAGVPLVRPIAGIAMGLIKEGERFAILSD---------I 483
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T++G I +Q + +++ L A+D ++
Sbjct: 484 LGDEDHLGDMDFKVAGTNNG-ITALQMDIKIDGITEEIMKIALEQARDGRIHILNEMAKA 542
Query: 238 ISN 240
+++
Sbjct: 543 LTS 545
Score = 108 bits (269), Expect = 7e-22, Method: Composition-based stats.
Identities = 32/228 (14%), Positives = 67/228 (29%), Gaps = 27/228 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----HGWITAEYGML 66
R ++L +++ A+G+ + +G+T +L T + + G +
Sbjct: 14 RPLTLETGKIARQADGAVIATYGETIVLATVVSAKNPKPDQDFFPLTVNYQEKFYAVGRI 73
Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
P R R I R+I R +R + Q+I+ +
Sbjct: 74 PGGYLKR------ESRPTESETLISRLIDRPIRPLFADGYKNDTQVIVSVIQYDLENNPD 127
Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
A+ + A G +A G I++ E
Sbjct: 128 ILAMIASSAA-------------LTLSGVPFMGPIAGARVGYCNKQYILNPHIDEMPESK 174
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
+D T+S ++ V+ A+ +D + ++
Sbjct: 175 LDLVVAGTES-AVLMVESEAQE--LPEDIMLGAVMFGHKGFQPVLDAI 219
>gi|254295410|ref|YP_003061433.1| polynucleotide phosphorylase/polyadenylase [Hirschia baltica ATCC
49814]
gi|254043941|gb|ACT60736.1| Polyribonucleotide nucleotidyltransferase [Hirschia baltica ATCC
49814]
Length = 709
Score = 161 bits (408), Expect = 6e-38, Method: Composition-based stats.
Identities = 44/242 (18%), Positives = 89/242 (36%), Gaps = 18/242 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
+R+ GR +Q+R I + GS L G+T + ATL +E+ + T
Sbjct: 316 VRIDGRALDQVRPILGEVSILPRTHGSALFTRGETQAICVATLGTGEDEQFIDGLEGTSK 375
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P S G + R+ G + RAL++V+ + + +
Sbjct: 376 SNFMLHYNFPPYSVGEVGRMGGAGRREIGHGKL----AWRALKAVLPSNEDFPYTLRLVS 431
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
++ +++G + A + G+ +A+ D + + + + A+
Sbjct: 432 EITESNGSSSMATVCGSSLAMMDAGVPITRPVSGIAMGLIKDEDGIAVLSD--------- 482
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T G + +Q + A +++ L AK A ++
Sbjct: 483 ILGDEDHLGDMDFKVAGTTEG-LTSLQMDIKIAGITKEIMQTALEQAKGGRAHILDEMNK 541
Query: 237 VI 238
+
Sbjct: 542 AL 543
Score = 106 bits (265), Expect = 2e-21, Method: Composition-based stats.
Identities = 30/226 (13%), Positives = 70/226 (30%), Gaps = 27/226 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----HGWITAEYGML 66
R ++L +++ A+G+ L +G+T +L T +K + + G +
Sbjct: 14 RPLTLETGRIARQADGAVLATYGETSVLATVVAAKKANPDLDFFPLTVNYQEKYYAAGRI 73
Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
P R R + R+I R +R + Q+++ +
Sbjct: 74 PGGFFKR------EARPTEKETLTSRLIDRPIRPLFVPGFKNETQVVLTVLSYDMENDPD 127
Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
+ + + G + A G G I++ + +
Sbjct: 128 V-------------VAMVAASAALTVSGVPFMGPIGAARVGYKDGEYIINPTLDQMADTQ 174
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
+D T ++ V+ A+ S++ + + +I
Sbjct: 175 LDLVVAGTQD-AVMMVESEAKE--LSEEVMLGAVMAGHESFQTVID 217
>gi|170691678|ref|ZP_02882842.1| Polyribonucleotide nucleotidyltransferase [Burkholderia graminis
C4D1M]
gi|170142962|gb|EDT11126.1| Polyribonucleotide nucleotidyltransferase [Burkholderia graminis
C4D1M]
Length = 715
Score = 161 bits (408), Expect = 6e-38, Method: Composition-based stats.
Identities = 47/242 (19%), Positives = 91/242 (37%), Gaps = 18/242 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHG 57
R+ GR +R I + V GS L G+T L AT +E+ +
Sbjct: 322 RIDGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQALVVATLGTKGDEQNIDALEGEYRE 381
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y M P +TG + + R+ G + RAL + + + I + +
Sbjct: 382 RFMLHYNMPPFATGETGRVGSPKRREIGHGRL----AKRALAACLPSADEFGYSIRVVSE 437
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ G +AL D M+ + +L+G+ A+ +
Sbjct: 438 ITESNGSSSMASVCGGCLALMDAGVPMKAHVAGIAMGLILEGNKFAVLTD---------I 488
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T+ G + +Q + +++ L AK+ ++
Sbjct: 489 LGDEDHLGDMDFKVAGTEQG-VTALQMDIKIQGITKEIMQVALAQAKEGRMHILGKMTSA 547
Query: 238 IS 239
+S
Sbjct: 548 VS 549
Score = 88.7 bits (218), Expect = 7e-16, Method: Composition-based stats.
Identities = 37/233 (15%), Positives = 72/233 (30%), Gaps = 31/233 (13%)
Query: 13 EISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT----KHGWITAEYGMLP 67
+ L +++ A G+ +V DT +L T + + T G +P
Sbjct: 17 NVRLETGEIARQASGAVIVDVEDTVILATVVGAKTAKPGQDFFPLTVDYLEKTYAAGKIP 76
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R GR I R+I R LR + Q++I + D
Sbjct: 77 GGFFRR------EGRPSEGETLISRLIDRPLRPLFPEGFYNEVQVVIHVLSLNPDVPADI 130
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
A+ GA A G V A + +++ + +
Sbjct: 131 PALIGASAA-------------LAVSGLPFNGPVGAARVAYINNEYVLNPTRPQMKESAL 177
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKD----RIADLIKLQKD 236
D T+ ++ V+ A++ S++ + + I + L ++
Sbjct: 178 DLIVAGTER-AVLMVESEAQQ--LSEEVMLGGVVFGHEQMQIAIDAIHDLVRE 227
>gi|302529720|ref|ZP_07282062.1| ribonuclease PH [Streptomyces sp. AA4]
gi|302438615|gb|EFL10431.1| ribonuclease PH [Streptomyces sp. AA4]
Length = 258
Score = 161 bits (408), Expect = 6e-38, Method: Composition-based stats.
Identities = 117/238 (49%), Positives = 158/238 (66%), Gaps = 1/238 (0%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R GR ++Q+RE+ LTR K+ GS LV+FG+T +L A++ E VP W + GW+TA
Sbjct: 3 RKDGRNDDQLREVKLTRGFQKWPAGSVLVEFGNTRVLCAASVTEGVPRWRAGSGLGWVTA 62
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
EY MLP +T R REAV GR GGR+ EI R+IGR+LR+ +DL+ALG I+IDCDVIQA
Sbjct: 63 EYAMLPSATNTRSDREAVKGRIGGRTHEISRLIGRSLRACIDLAALGENTIVIDCDVIQA 122
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
DGGTRTAA+TG +VAL D +N+ Q L VAA+S G++ G +DL Y E
Sbjct: 123 DGGTRTAAVTGGYVALADA-ITWLGAANRLNDPQPLSSSVAAVSVGVVDGRVRLDLPYEE 181
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
DS +VD N V TD+G ++EVQG+ E ATF++ ML+LA +L +LQK+ ++
Sbjct: 182 DSRAEVDMNVVATDAGTLIEVQGTGEGATFARSTLDTMLDLALAGCEELTRLQKEALA 239
>gi|153006268|ref|YP_001380593.1| ribonuclease PH [Anaeromyxobacter sp. Fw109-5]
gi|166228263|sp|A7HFW3|RNPH_ANADF RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|152029841|gb|ABS27609.1| ribonuclease PH [Anaeromyxobacter sp. Fw109-5]
Length = 238
Score = 161 bits (408), Expect = 6e-38, Method: Composition-based stats.
Identities = 126/239 (52%), Positives = 161/239 (67%), Gaps = 2/239 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR +GR +R + L VSK+AEGSCL +FGDTH+L TA+++EKVP + T GW+T
Sbjct: 1 MRTNGRGPRDLRNVVLEPGVSKHAEGSCLARFGDTHVLCTASVDEKVPPHVYGTGAGWVT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPRST R+ REA G+QGGR+ EIQR+IGRALR+ VDL ALG+R + +DCDVIQ
Sbjct: 61 AEYGMLPRSTHERMAREAARGKQGGRTLEIQRLIGRALRAAVDLRALGTRTVTLDCDVIQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTAAITG +VAL L+ + K L VAA+S G++ G VDLDYG
Sbjct: 121 ADGGTRTAAITGGYVALALALRGL--QQRKTLSRNPLARSVAAVSVGLVEGEVCVDLDYG 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
EDST +VD N V T G +VEVQG+AE F + M++ A + I L + Q+ +
Sbjct: 179 EDSTAEVDMNVVATGDGALVEVQGTAEGKPFPRSDLDRMVDAALEAIGRLKERQEQALR 237
>gi|307730344|ref|YP_003907568.1| polyribonucleotide nucleotidyltransferase [Burkholderia sp.
CCGE1003]
gi|307584879|gb|ADN58277.1| polyribonucleotide nucleotidyltransferase [Burkholderia sp.
CCGE1003]
Length = 715
Score = 161 bits (408), Expect = 6e-38, Method: Composition-based stats.
Identities = 47/242 (19%), Positives = 91/242 (37%), Gaps = 18/242 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHG 57
R+ GR +R I + V GS L G+T L AT +E+ +
Sbjct: 322 RIDGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQALVVATLGTKGDEQNIDALEGEYRE 381
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y M P +TG + + R+ G + RAL + + + I + +
Sbjct: 382 RFMLHYNMPPFATGETGRVGSPKRREIGHGRL----AKRALAACLPSADEFGYSIRVVSE 437
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ G +AL D M+ + +L+G+ A+ +
Sbjct: 438 ITESNGSSSMASVCGGCLALMDAGVPMKAHVAGIAMGLILEGNKFAVLTD---------I 488
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T+ G + +Q + +++ L AK+ ++
Sbjct: 489 LGDEDHLGDMDFKVAGTEQG-VTALQMDIKIQGITKEIMQVALAQAKEGRMHILGKMTSA 547
Query: 238 IS 239
+S
Sbjct: 548 VS 549
Score = 94.5 bits (233), Expect = 1e-17, Method: Composition-based stats.
Identities = 37/233 (15%), Positives = 73/233 (31%), Gaps = 27/233 (11%)
Query: 13 EISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT----KHGWITAEYGMLP 67
+ L +++ A G+ +V DT +L T + + T G +P
Sbjct: 17 NVRLETGEIARQASGAVIVDVEDTVVLATVVGAKTAKPGQDFFPLTVDYLEKTYAAGKIP 76
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R GR I R+I R LR + Q++I + D
Sbjct: 77 GGFFRR------EGRPSEGETLISRLIDRPLRPLFPEGFYNEVQVVIHVLSLNPDIPADI 130
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
A+ GA A G V A + +++ + +
Sbjct: 131 PALIGASAA-------------LAVSGLPFNGPVGAARVAYINNEYVLNPTRAQMKDSAL 177
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
D T+ ++ V+ A++ S++ + +++ I D++
Sbjct: 178 DLVVAGTER-AVLMVESEAQQ--LSEEVMLGAVVFGHEQMQAAIDAIHDLVRE 227
>gi|268316873|ref|YP_003290592.1| Polyribonucleotide nucleotidyltransferase [Rhodothermus marinus DSM
4252]
gi|262334407|gb|ACY48204.1| Polyribonucleotide nucleotidyltransferase [Rhodothermus marinus DSM
4252]
Length = 772
Score = 161 bits (408), Expect = 6e-38, Method: Composition-based stats.
Identities = 45/242 (18%), Positives = 87/242 (35%), Gaps = 18/242 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +++R I + GS + G+T +L + TL + ++ I
Sbjct: 332 RIDGRSLDEIRPIWMEVGYLPRVHGSAIFTRGETQVLASVTLGTSKDVQMIDQIFVQGDK 391
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P TG R+ G RAL +++ + I ++ D
Sbjct: 392 RFFLHYEFPPFCTGEIRFLRGPGRREIGHGYL----AERALAAMLPDESSFPYTIRVNAD 447
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
V++++G + A++ +AL D ++ + + +G AI +
Sbjct: 448 VLESNGSSSMASVCAGSLALMDAGVPVKKHVAGVAMGLIKEGDQVAILTD---------I 498
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T G I Q + +++ L A+ ++ L +
Sbjct: 499 LGTEDHLGDMDFKVAGTRDG-ITACQMDIKIGGLTREIMQRALEQARRARMYILDLMEQT 557
Query: 238 IS 239
I
Sbjct: 558 IE 559
Score = 104 bits (260), Expect = 9e-21, Method: Composition-based stats.
Identities = 44/233 (18%), Positives = 78/233 (33%), Gaps = 27/233 (11%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVP----MWIRNTKHGWITAEYGMLPR 68
+ L ++K A G+ +V+ GDT +L TA L ++ + ++ A G +P
Sbjct: 18 LRLETGRLAKQANGAVVVRQGDTMVLCTAVLADEPREGQSFFPLTVEYREKFAAGGRIPG 77
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
R GR + R+I RA+R + QII
Sbjct: 78 GFIKR------EGRPTDKEILSSRLIDRAIRPLFPDGFFHEVQIICYVISADDRYDADV- 130
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
L + G +A + G + G +V+ E D++
Sbjct: 131 ------------LAGTGASAALLLAGAPFDGPIAEVRVGRVDGQFVVNPTLKELEQSDIN 178
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
IV V+ E S++ L +A + I L + Q + ++
Sbjct: 179 LVVAG-KEDAIVMVE--GEMKEVSEEDMLEALEVAHEAIRKLCRGQLEFVAAH 228
>gi|149185848|ref|ZP_01864163.1| polynucleotide phosphorylase/polyadenylase [Erythrobacter sp.
SD-21]
gi|148830409|gb|EDL48845.1| polynucleotide phosphorylase/polyadenylase [Erythrobacter sp.
SD-21]
Length = 763
Score = 161 bits (408), Expect = 6e-38, Method: Composition-based stats.
Identities = 49/243 (20%), Positives = 92/243 (37%), Gaps = 18/243 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKHG 57
R+ GR+ +Q+R I + GS L G+T + T TL E++ + +
Sbjct: 316 RIDGRKLDQVRPIEAMVGLLPRTHGSALFTRGETQAICTTTLGTKDAEQMIDGLEGLSYN 375
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + S R+ G + RAL V+ I I D
Sbjct: 376 NFMLHYNFPPYSVGEVGRFGFTSRRETGHGKL----AWRALHPVLPDHEDFPYTIRILSD 431
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A + G +++ D +E + + +L+G A+ +
Sbjct: 432 ITESNGSSSMATVCGGCLSMMDAGVPIERPVSGIAMGLILEGEDFAVLSD---------I 482
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D +++G I +Q + A +Q+ L AK ++
Sbjct: 483 LGDEDHLGDMDFKVAGSEAG-ITTMQMDIKVAGITQEIMAKALEQAKAGRQHILGEMAKA 541
Query: 238 ISN 240
+ +
Sbjct: 542 LGS 544
Score = 98.0 bits (242), Expect = 1e-18, Method: Composition-based stats.
Identities = 33/228 (14%), Positives = 68/228 (29%), Gaps = 29/228 (12%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT----KHGWITAEYGMLPR 68
++L +++ A+G+ L +G+T +L T + V + + G +P
Sbjct: 16 LTLETGQIARQADGAVLATYGETVVLCAVTAAKSVKEGQDFFPLTVHYQEKFSAAGRIPG 75
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
R GR + R+I R +R + +I +
Sbjct: 76 GFFKR------EGRATEKETLTSRLIDRPVRPLFPEGFYNEINVICQVLSFDGETEPDIV 129
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLD--YGEDSTID 186
A+ A A G + A G G ++ D
Sbjct: 130 AMIAASAA-------------LTISGVPFMGPIGAARVGFRNGEYELNPSLANALDEEGR 176
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
+D T ++ V+ A+ +++ + A D ++
Sbjct: 177 LDLVVAATQD-AVMMVESEAKE--LTEEEMLGAVAFAHDEARKVVGAI 221
>gi|134097802|ref|YP_001103463.1| ribonuclease PH [Saccharopolyspora erythraea NRRL 2338]
gi|166228314|sp|A4F913|RNPH_SACEN RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|133910425|emb|CAM00538.1| ribonuclease PH [Saccharopolyspora erythraea NRRL 2338]
Length = 251
Score = 161 bits (408), Expect = 6e-38, Method: Composition-based stats.
Identities = 108/238 (45%), Positives = 153/238 (64%), Gaps = 1/238 (0%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R GR ++ +RE+ +TR + GS LV+FG T +L A+++E VP W + GW+TA
Sbjct: 3 RADGRSDDALREVRITRGYQDWPAGSVLVEFGRTRVLCAASVQEGVPRWRAGSGLGWVTA 62
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
EY MLP ST R RE+V GR GGR+ EI R++GR+LR+ +DL+ALG I +DCDVIQA
Sbjct: 63 EYAMLPSSTNTRSARESVKGRIGGRTHEISRLVGRSLRACIDLAALGENTIALDCDVIQA 122
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
DGGTRTAAITGA+VAL D + + + L +AA+S G++ G +DL Y E
Sbjct: 123 DGGTRTAAITGAYVALADAITWLSAAGRLTD-PKPLSCSIAAVSVGVVDGRVRLDLPYEE 181
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
DS +VD N V TD G +VEVQG+ E ATF++ M++ A ++L ++Q + ++
Sbjct: 182 DSRAEVDMNVVATDHGTLVEVQGTGEGATFTRSTMDKMIDFALAGCSELSRIQSEALA 239
>gi|238764323|ref|ZP_04625274.1| Ribonuclease PH [Yersinia kristensenii ATCC 33638]
gi|238697474|gb|EEP90240.1| Ribonuclease PH [Yersinia kristensenii ATCC 33638]
Length = 238
Score = 161 bits (408), Expect = 6e-38, Method: Composition-based stats.
Identities = 120/240 (50%), Positives = 160/240 (66%), Gaps = 2/240 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR +GR Q+R ++LTR +K+AEGS LV+FGDT +L TAT+EE VP +++ GWIT
Sbjct: 1 MRPAGRAAQQVRPLTLTRNYTKHAEGSVLVEFGDTKVLCTATVEEGVPRFLKGQGQGWIT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPRST +R REA G+QGGR+ EIQR+I R+LR+ VDL LG I +DCDV+Q
Sbjct: 61 AEYGMLPRSTHSRNAREAAKGKQGGRTLEIQRLIARSLRAAVDLKKLGEFTITLDCDVLQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+I+GA VAL D L + + +KG VAA+S G++ G + DL+Y
Sbjct: 121 ADGGTRTASISGACVALADALNKLVAA--GKLKANPMKGLVAAVSVGIVKGEALCDLEYI 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
EDS + D N VM + G ++EVQG+AE FS + A+L LA+ I + QK +
Sbjct: 179 EDSAAETDMNVVMMEDGRMIEVQGTAEGEPFSHEELLALLELARGGIETIFLAQKAALEQ 238
>gi|56478759|ref|YP_160348.1| polynucleotide phosphorylase/polyadenylase [Aromatoleum aromaticum
EbN1]
gi|81356612|sp|Q5NZR7|PNP_AZOSE RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|56314802|emb|CAI09447.1| polyribonucleotide nucleotidyltransferase protein [Aromatoleum
aromaticum EbN1]
Length = 699
Score = 161 bits (408), Expect = 6e-38, Method: Composition-based stats.
Identities = 49/244 (20%), Positives = 94/244 (38%), Gaps = 18/244 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +R I + V GS L G+T L ATL +E++ I
Sbjct: 316 RIDGRDTRTVRPIDIRVGVLPRTHGSALFTRGETQALVIATLGTGRDEQIIDAIAGEYRE 375
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P STG + R+ G + RAL + + S + + +
Sbjct: 376 SFLLHYNFPPFSTGETGRMGVTKRREVGHGRL----AKRALIAALPADEDFSYTVRVVSE 431
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ GA +A+ D M+ + + +G+ A+ +
Sbjct: 432 ITESNGSSSMASVCGASLAMMDAGVPMKAHVAGIAMGLIKEGNRFAVLTD---------I 482
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T++G I +Q + +++ L A + ++ L K
Sbjct: 483 LGDEDHLGDMDFKVAGTENG-ITALQMDIKIQGITKEIMQVALAQAGEGRIHILALMKQA 541
Query: 238 ISNE 241
+++
Sbjct: 542 LASH 545
Score = 97.6 bits (241), Expect = 1e-18, Method: Composition-based stats.
Identities = 33/231 (14%), Positives = 75/231 (32%), Gaps = 27/231 (11%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT----KHGWITAEYGMLPR 68
++L +++ A G+ +V DT +L T ++ + G +P
Sbjct: 16 VTLETGEIARQAGGAVIVNMDDTIVLATVVAAKEAKAGQDFFPLTVDYVEKFYAAGRIPG 75
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
R GR + R+I R +R + Q+II + +
Sbjct: 76 GFFKR------EGRPTEKETLTSRLIDRPIRPLFPEGFYNEVQVIITVLSLNPEVDPDIP 129
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+ GA A G + A G G +++ + +++
Sbjct: 130 AMIGASAA-------------LAISGVPFDGPIGACRVGYSGGQYLLNPTVEQLKASELN 176
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
T++ ++ V+ A S++ + ++ I+ +++
Sbjct: 177 LVVAGTEA-AVLMVESEARE--LSEEVMLGAVVFGHQQMQVAIRAINELVE 224
>gi|118467865|ref|YP_889156.1| ribonuclease PH [Mycobacterium smegmatis str. MC2 155]
gi|166228292|sp|A0R1W8|RNPH_MYCS2 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|118169152|gb|ABK70048.1| ribonuclease PH [Mycobacterium smegmatis str. MC2 155]
Length = 259
Score = 161 bits (407), Expect = 7e-38, Method: Composition-based stats.
Identities = 110/237 (46%), Positives = 153/237 (64%), Gaps = 1/237 (0%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R GR ++++R + +TR + + GS LV+FG T ++ TA++ E VP W + + GW+TA
Sbjct: 4 REDGRLDDELRPVVITRGFTSHPAGSVLVEFGQTRVMCTASVTEGVPRWRKGSGQGWLTA 63
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
EY MLP +T +R RE+V GR GGR+QEI R+IGR+LR+ +DL+ALG I IDCDV+QA
Sbjct: 64 EYAMLPAATHDRSDRESVKGRIGGRTQEISRLIGRSLRACIDLAALGENTIAIDCDVLQA 123
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
DGGTRTAAITGA+VAL D + + L +AA+S G++ G VDL Y E
Sbjct: 124 DGGTRTAAITGAYVALSDAVTWLAAAGRLSDPR-PLSCAIAAVSVGVVDGRVRVDLPYSE 182
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
DS +VD N V TD+G +VE+QG+ E ATF + ML+ A L LQ++ +
Sbjct: 183 DSRAEVDMNVVATDTGTLVEIQGTGEGATFPRSTLDKMLDAALGATEQLFVLQREAL 239
>gi|319405094|emb|CBI78698.1| polyribonucleotide nucleotidyltransferase [Bartonella sp. AR 15-3]
Length = 733
Score = 161 bits (407), Expect = 7e-38, Method: Composition-based stats.
Identities = 44/243 (18%), Positives = 85/243 (34%), Gaps = 18/243 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR + +R I + GS L G+T L ATL +E+ +
Sbjct: 317 RIDGRNLSDVRPIQSEVGLFPRTHGSALFTRGETQALVIATLGTGEDEQYIDSLTGMYKE 376
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + + R+ G + RA+ ++ I +
Sbjct: 377 TFLLHYNFPPFSVGEIGRIGSPGRREIGHGKL----AWRAIHPMLPTKESFPYTIRTVSE 432
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A + G +AL D + + + +G A+ +
Sbjct: 433 ITESNGSSSMATVCGTSLALMDAGVPLARPVAGIAMGLIKEGEQFAVLSD---------I 483
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T++G I +Q + +++ L AKD ++
Sbjct: 484 LGDEDHLGDMDFKVAGTENG-ITSLQMDIKIDGITEEIMKIALAQAKDGRIHILNEMAKA 542
Query: 238 ISN 240
++
Sbjct: 543 LAR 545
Score = 102 bits (254), Expect = 4e-20, Method: Composition-based stats.
Identities = 35/228 (15%), Positives = 70/228 (30%), Gaps = 27/228 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPM----WIRNTKHGWITAEYGML 66
R + L +++ A+G+ + +G+T +L T + + + G +
Sbjct: 14 RPLILETGKIARQADGAIIATYGETVVLATVVSAKTPKPDQNFFPLTVNYQEKNYAVGKI 73
Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
P R R I R+I R +R + Q+I+ +
Sbjct: 74 PGGYFKR------ENRPSESETLISRLIDRPIRPLFVDGYKNDTQVIVSVIQHDLENNPD 127
Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
AI + A G +AA G G I++ + E
Sbjct: 128 ILAIIASSAA-------------LTLSGIPFMGPIAAARIGYCNGQYILNPNIDEMPESK 174
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
+D T++ ++ V+ A +D + + +I
Sbjct: 175 LDLVVAGTEN-AVLMVESEAHE--LPEDVMLNAVMFGQKSFQPVINAI 219
>gi|217967533|ref|YP_002353039.1| Polyribonucleotide nucleotidyltransferase [Dictyoglomus turgidum
DSM 6724]
gi|254782720|sp|B8E2S5|PNP_DICTD RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|217336632|gb|ACK42425.1| Polyribonucleotide nucleotidyltransferase [Dictyoglomus turgidum
DSM 6724]
Length = 693
Score = 161 bits (407), Expect = 7e-38, Method: Composition-based stats.
Identities = 48/242 (19%), Positives = 92/242 (38%), Gaps = 17/242 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT---LEEKVPMWIRNTKHGW 58
R+ GR+ N++R +S V GS L + G+T +L+ T EE++ + ++
Sbjct: 315 RVDGRRLNELRPVSCEVGVLSRVHGSALFQRGETQVLSVVTLGAGEEQIIESVIESEPKR 374
Query: 59 ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDV 118
Y P S G R+ G RAL ++ I + +V
Sbjct: 375 YIHHYNFPPFSVGEAKPLRGPKRREIGHGAL----AERALLPLIPKEEEFPYTIRVVSEV 430
Query: 119 IQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLD 178
+ ++G T A++ G+ ++L D ++ + + +G + +
Sbjct: 431 LSSNGSTSMASVCGSSLSLMDAGVPIKTHVAGVAMGLIKEGEKFEVLTD---------IQ 481
Query: 179 YGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
ED+ +D T +G I VQ + S + L AK+ ++ + + I
Sbjct: 482 GLEDALGGMDFKIAGTKNG-ITAVQLDIKVDGLSYEIIEKTLKQAKEARYQILDIMEKTI 540
Query: 239 SN 240
S
Sbjct: 541 SQ 542
Score = 115 bits (287), Expect = 7e-24, Method: Composition-based stats.
Identities = 40/231 (17%), Positives = 85/231 (36%), Gaps = 27/231 (11%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEK----VPMWIRNTKHGWITAEYGMLPR 68
+ + V+ A G+ LV++G+T +L T E+ V + ++ G +P
Sbjct: 16 LKIDIGKVAWQATGAALVQYGETTVLVTVVASEEKKEDVDFFPLTVEYVERLYAAGKIPG 75
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
R G+ R+I R LR + Q+I+ + T
Sbjct: 76 GFFKR------EGKPTEPEILFARLIDRPLRPLFSKDFRNEVQVIVTVLSYDHENSTDIP 129
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
+I GA A+ KG + A+ G ++ +++ +D
Sbjct: 130 SIIGASCAIMLAG-------------LPFKGPIGAVRVGWDGKEWYINPSVALSNSLLLD 176
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
T ++ ++G + ++ F + A ++I ++I Q++++S
Sbjct: 177 LVVAGTKD-AVLMIEGDGKEVP--EEIFLEGIIRAHEQIGEVINFQEEILS 224
>gi|304316856|ref|YP_003852001.1| polyribonucleotide nucleotidyltransferase [Thermoanaerobacterium
thermosaccharolyticum DSM 571]
gi|302778358|gb|ADL68917.1| polyribonucleotide nucleotidyltransferase [Thermoanaerobacterium
thermosaccharolyticum DSM 571]
Length = 700
Score = 161 bits (407), Expect = 7e-38, Method: Composition-based stats.
Identities = 47/244 (19%), Positives = 89/244 (36%), Gaps = 18/244 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56
+R+ GR + +R I+ V GS + G T ++T AT + ++ + + +
Sbjct: 311 IRVDGRGLDDIRPITCDIGVLPRTHGSAVFTRGQTQVMTVATLGPLGDIQILDGLGDEES 370
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P S G R+ G RAL ++ I +
Sbjct: 371 KRYMHHYNFPPFSVGETRPLRGPGRREIGHGAL----AERALEPMIPSEEEFPYTIRLVS 426
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V+ ++G T A++ G+ +AL D ++ + + +G +I
Sbjct: 427 EVLSSNGSTSQASVCGSTLALMDAGVPIKAPVAGVAMGLIKEGETVSILTD--------- 477
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T+ G I +Q + A +D A L A+ ++ +
Sbjct: 478 IQGIEDFLGDMDFKVAGTEKG-ITAIQMDIKIAGIDRDILSAALEKARKGRLFILNKMLE 536
Query: 237 VISN 240
I
Sbjct: 537 TIKE 540
Score = 107 bits (267), Expect = 1e-21, Method: Composition-based stats.
Identities = 40/233 (17%), Positives = 78/233 (33%), Gaps = 27/233 (11%)
Query: 13 EISLTRRVSKY-AEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKHGWITAEYGMLP 67
++ + A GS LV++GDT +L TA E V + + + G +P
Sbjct: 13 KLIVQTGKLAQLANGSALVRYGDTVVLVTACASKEPREGVDFFPLSVDYEERLYSVGKIP 72
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R G+ ++ R+I R +R + Q+I + D
Sbjct: 73 GGFIKR------EGKPTEKAILTSRLIDRPIRPLFPHGYRNDVQVIATVLSVDPDVQPEI 126
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
A+ G+ VA G ++S ++ G I++ D D+
Sbjct: 127 VAMIGSSVA-------------LSISDIPFNGPTGSVSVALVDGKFIINPDLATREKSDL 173
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
T I+ V+ A ++ + A + I ++ + ++
Sbjct: 174 HLTVSGTKD-AIMMVEAGANEVP--EEVMLDAIMYAHEYIKKIVDFIEGIVKE 223
>gi|160872287|ref|ZP_02062419.1| polyribonucleotide nucleotidyltransferase
(Polynucleotidephosphorylase) (PNPase) [Rickettsiella
grylli]
gi|159121086|gb|EDP46424.1| polyribonucleotide nucleotidyltransferase
(Polynucleotidephosphorylase) (PNPase) [Rickettsiella
grylli]
Length = 712
Score = 161 bits (407), Expect = 7e-38, Method: Composition-based stats.
Identities = 45/243 (18%), Positives = 91/243 (37%), Gaps = 18/243 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR + +R I++ GS L G+T L TL + + +
Sbjct: 325 RIDGRDKKAVRPITIEPGFLPRTHGSALFTRGETQALVVTTLGTDRDAQTVEALDGEGRE 384
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + + R+ G RALR+V+ + + + +
Sbjct: 385 TFMLHYNFPPYSVGETGQIGSPKRREIGHGNL----AKRALRAVLPSESDFPYVLRVVSE 440
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A + GA VAL D ++ + + +G A+ +
Sbjct: 441 ITESNGSSSMATVCGASVALMDAGVPLKKHVAGIAMGLIKEGEQFAVLTD---------I 491
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T G + +Q + +++ LN A++ ++ + K+
Sbjct: 492 LGDEDHLGDMDFKVAGTVDG-VTALQMDIKIEGITEEILKVALNQAREGRLHILSIMKEA 550
Query: 238 ISN 240
++
Sbjct: 551 LAE 553
Score = 78.3 bits (191), Expect = 9e-13, Method: Composition-based stats.
Identities = 43/238 (18%), Positives = 75/238 (31%), Gaps = 44/238 (18%)
Query: 13 EISLTRR-VSKYAEGSCLVKFG-------------DTHLLTTATLEEKVPMWIRNTKHGW 58
EI L +++ A S LV G T +E + ++
Sbjct: 23 EIILETGKIARQATASVLVSVGGVTVLVTVVGNKRQT--------DENRDFFPLTVQYQE 74
Query: 59 ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDV 118
T G +P R GR + R+I R +R + Q++
Sbjct: 75 RTYAAGRIPGGYFKR------EGRPSEKEILTSRLIDRPIRPLFPEGFYNEVQVVATVLS 128
Query: 119 IQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLD 178
D A+ GA A K +AA+ G G I++
Sbjct: 129 STPDINPDIPALIGASAA-------------LALSGLPFKEPIAAVRVGYADGQYILNPS 175
Query: 179 YGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
E T D+D T+ ++ V+ A A S++ + ++ +I+ K+
Sbjct: 176 MKELETSDLDLVVAATEK-AVLMVESQA--AELSEEIMLKAILFGHQQMQGVIQSIKE 230
>gi|328545912|ref|YP_004306021.1| polyribonucleotide nucleotidyltransferase [polymorphum gilvum
SL003B-26A1]
gi|326415652|gb|ADZ72715.1| Polyribonucleotide nucleotidyltransferase [Polymorphum gilvum
SL003B-26A1]
Length = 708
Score = 161 bits (407), Expect = 7e-38, Method: Composition-based stats.
Identities = 44/243 (18%), Positives = 86/243 (35%), Gaps = 18/243 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +R I + A GS L G+T L ATL +E+ + T
Sbjct: 316 RIDGRDLKTVRPIVSEVGILPRAHGSALFTRGETQGLVVATLGTGEDEQFVDALEGTYKA 375
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + + R+ G + RA+ ++ + + +
Sbjct: 376 HFMLHYNFPPYSVGETGRMGSPGRREIGHGKL----AWRAINPMLPAKHEFPYTLRVVSE 431
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A + G +AL D ++ + + +G A+ +
Sbjct: 432 ITESNGSSSMATVCGTSLALMDAGVPLKAPVAGIAMGLIKEGDRFAVLSD---------I 482
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T G I +Q + +++ L A++ ++
Sbjct: 483 LGDEDHLGDMDFKVAGTAEG-ITSLQMDIKIQGITEEIMKVALEQAREGRVHILGEMSKA 541
Query: 238 ISN 240
I+
Sbjct: 542 ITE 544
Score = 107 bits (267), Expect = 1e-21, Method: Composition-based stats.
Identities = 32/228 (14%), Positives = 66/228 (28%), Gaps = 27/228 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----HGWITAEYGML 66
R + L V++ A+G+ + +G+T +L T ++ + G +
Sbjct: 14 RPLILETGKVARQADGAVMATYGETKVLATVVSAKEPKPGQDFFPLTVNYQEKAFAAGKI 73
Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
P R GR R+I R +R + Q+I+ +
Sbjct: 74 PGGYFKR------EGRPSEHETLTSRLIDRPIRPLFAEGYKNDTQVIVTVLSHDMENAPD 127
Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
A+ + A G V G + G +++ +
Sbjct: 128 ILALVASSAA-------------LTLSGVPFMGPVGGARVGYINGEYVLNPLIDDMPESS 174
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
+D T ++ V+ A+ +D + +I
Sbjct: 175 LDLIVAGTGD-AVLMVESEAKE--LPEDVMLGAVMFGHSGFQTVIDAI 219
>gi|282858123|ref|ZP_06267318.1| tRNA nucleotidyltransferase [Pyramidobacter piscolens W5455]
gi|282584045|gb|EFB89418.1| tRNA nucleotidyltransferase [Pyramidobacter piscolens W5455]
Length = 251
Score = 161 bits (407), Expect = 7e-38, Method: Composition-based stats.
Identities = 115/233 (49%), Positives = 156/233 (66%), Gaps = 2/233 (0%)
Query: 7 QENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGML 66
+ + +R +++ R + YAEGSC++ G T +L TAT+E+KVP ++R GW+TAEY +L
Sbjct: 13 RADALRPVTMERNWNVYAEGSCVISCGRTRVLCTATVEDKVPPFLRGQGKGWVTAEYSLL 72
Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
PRST RV R++ GR GRSQEIQR+IGR+LR+ VDL ALG R + +DCDVIQADGGTR
Sbjct: 73 PRSTMTRVPRDSTKGRINGRSQEIQRLIGRSLRAAVDLDALGERCVTLDCDVIQADGGTR 132
Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
TA+ITGA+VAL D L+ + LK VAA+S G + G ++DL Y EDST +
Sbjct: 133 TASITGAYVALVDALRWLR--GQGAFEKLPLKSPVAAVSVGKVRGQLLLDLCYEEDSTAE 190
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
VD N VM G +EVQG+ E FS++ ML+LA I +L+ LQ+ V+
Sbjct: 191 VDFNVVMNGQGDFIEVQGTGEGGVFSREEMAGMLDLASAGIHELMALQRHVLR 243
>gi|225874384|ref|YP_002755843.1| tRNA nucleotidyltransferase [Acidobacterium capsulatum ATCC 51196]
gi|225793778|gb|ACO33868.1| tRNA nucleotidyltransferase [Acidobacterium capsulatum ATCC 51196]
Length = 246
Score = 161 bits (407), Expect = 8e-38, Method: Composition-based stats.
Identities = 114/240 (47%), Positives = 157/240 (65%), Gaps = 2/240 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
R SGR+ ++MR + LT + EGS L++ G T +L AT+E+ VP W+RN+ GW+T
Sbjct: 7 FRASGRRPDEMRPVKLTAGYTSMPEGSVLIEVGHTRVLCAATVEQGVPGWMRNSGRGWVT 66
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPR+T R RE+ G+ GGR+ EIQR+IGR+LR+VVD+ ALG R +I+DCDV+Q
Sbjct: 67 AEYGMLPRATLTRTARESERGKVGGRTHEIQRLIGRSLRAVVDMQALGERTVILDCDVLQ 126
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTAAITGA AL Q + L+ VAA S G++ G ++DL Y
Sbjct: 127 ADGGTRTAAITGACTALAIACQRLVKAGTLKAS--PLRQLVAATSVGIVEGTTLLDLAYE 184
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
EDS +VD N VMT+ G +VEVQ +AER F + M++ A+ I +L+ LQ+ + +
Sbjct: 185 EDSQAEVDMNLVMTEDGGLVEVQATAERQAFPRARMMEMMDYAEKGIRELLALQRAAMES 244
>gi|320534625|ref|ZP_08035070.1| ribonuclease PH [Actinomyces sp. oral taxon 171 str. F0337]
gi|320133145|gb|EFW25648.1| ribonuclease PH [Actinomyces sp. oral taxon 171 str. F0337]
Length = 268
Score = 161 bits (407), Expect = 8e-38, Method: Composition-based stats.
Identities = 105/240 (43%), Positives = 146/240 (60%), Gaps = 2/240 (0%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R GR +++R +++TR +AEGS LV FG T +L A+ E VP W + + GW+TA
Sbjct: 8 RKDGRAVDELRPVTMTRHWLDHAEGSVLVSFGRTRVLCAASFTEGVPRWRKGSGEGWVTA 67
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
EY MLPR+ R RE+V G+ GGR+ EI R+IGR+LR ++D++ALG I +DCDV+QA
Sbjct: 68 EYAMLPRAGSERSGRESVRGKVGGRTHEISRLIGRSLRGIIDVAALGENTIALDCDVLQA 127
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLS--QVLKGHVAAISCGMLCGYPIVDLDY 179
DGGTRTAAITGA+VAL D + + L ++AIS G++ G P +DL Y
Sbjct: 128 DGGTRTAAITGAYVALADAVAWGTERGLIKARPGKPALSDSLSAISVGIIDGVPCLDLPY 187
Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
ED D N V T G +EVQG+AE A F + +L+LA + L LQ+ ++
Sbjct: 188 EEDVRAQTDMNVVQTGDGRFIEVQGTAEHAPFDRSELGELLDLAAVGNSRLAALQRQALA 247
>gi|253701667|ref|YP_003022856.1| ribonuclease PH [Geobacter sp. M21]
gi|251776517|gb|ACT19098.1| ribonuclease PH [Geobacter sp. M21]
Length = 239
Score = 161 bits (407), Expect = 8e-38, Method: Composition-based stats.
Identities = 121/238 (50%), Positives = 166/238 (69%), Gaps = 2/238 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+R GR N +RE+ +TR K+AEGS LV+FGDT ++ AT+E +VP +++ GW+T
Sbjct: 2 IRREGRAANALREVKITRNYLKHAEGSVLVEFGDTKVICNATVEARVPSFLKGKGSGWVT 61
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEY MLPR+T R +RE+ G+ GR+ EIQR+IGR+LR+VVDL LG R I+IDCDVIQ
Sbjct: 62 AEYCMLPRATHTRNQRESAKGKLSGRTHEIQRLIGRSLRAVVDLELLGERSIVIDCDVIQ 121
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+ITGA+VAL D LQ++ + + L+ VAA+S G++ G P +DLDY
Sbjct: 122 ADGGTRTASITGAYVALADALQNLVKAGDLEKS--PLREAVAAVSVGIVDGVPFLDLDYP 179
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
EDST +VD NFVMT S VEVQG+AE F+ D AM + A ++ L ++Q++ +
Sbjct: 180 EDSTAEVDMNFVMTSSMRFVEVQGTAEAEPFTLDQMDAMRSHAMLGLSRLFEIQQEAL 237
>gi|317050112|ref|YP_004117760.1| ribonuclease PH [Pantoea sp. At-9b]
gi|316951729|gb|ADU71204.1| ribonuclease PH [Pantoea sp. At-9b]
Length = 238
Score = 161 bits (407), Expect = 8e-38, Method: Composition-based stats.
Identities = 124/240 (51%), Positives = 163/240 (67%), Gaps = 2/240 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR +GR NQ+R ++LTR +K+AEGS LV+FG+T +L TAT++E VP +++ GW+T
Sbjct: 1 MRPAGRHTNQVRPVTLTRHYTKHAEGSVLVEFGETKVLCTATVDEGVPRFLKGQGQGWVT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPRST +R+ REA G+QGGR+ EIQR+I R+LR+ VDL ALG I +DCDVIQ
Sbjct: 61 AEYGMLPRSTHSRMAREAAKGKQGGRTLEIQRLIARSLRAAVDLQALGEYTITLDCDVIQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+ITGA VAL D L + LKG VAAIS G++ G DL+Y
Sbjct: 121 ADGGTRTASITGACVALADALNKLVADGKLKSS--PLKGMVAAISVGIVEGEARCDLEYV 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
EDS + D N VM + G ++EVQG+AE FS + +L LA+ I LI QK +++
Sbjct: 179 EDSAAETDMNVVMLEDGRMIEVQGTAEGEPFSHEELLELLALARGGIEQLIVAQKAALAD 238
>gi|124483602|emb|CAM32674.1| Polyribonucleotide nucleotidyltransferase [Herbaspirillum
seropedicae]
Length = 712
Score = 161 bits (407), Expect = 8e-38, Method: Composition-based stats.
Identities = 46/241 (19%), Positives = 90/241 (37%), Gaps = 18/241 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +R IS+ V GS L G+T L ATL + +V +
Sbjct: 320 RIDGRDTRTVRPISIRTGVLPRTHGSALFTRGETQALVIATLGTARDGQVIDAVAGEYKE 379
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + R+ G + R + +V+ I + +
Sbjct: 380 NFLFHYNFPPFSVGECGRMMGPKRREIGHGRL----AKRGVLAVMPSLEAFPYTIRLVSE 435
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ G+ +AL D M+ + + +G+ A+ +
Sbjct: 436 ITESNGSSSMASVCGSSLALMDAGVPMKAHVAGIAMGLIKEGNKFAVLTD---------I 486
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T +G I +Q + +++ L AK+ ++ ++
Sbjct: 487 LGDEDHLGDMDFKVAGTANG-ITALQMDIKIQGITKEIMQVALEQAKEGRHHILGKMQEA 545
Query: 238 I 238
+
Sbjct: 546 V 546
Score = 98.0 bits (242), Expect = 1e-18, Method: Composition-based stats.
Identities = 38/232 (16%), Positives = 81/232 (34%), Gaps = 27/232 (11%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT----KHGWITAEYGMLPR 68
++L +++ A G+ +V DT +L T ++ + T G +P
Sbjct: 16 VTLETGEIARQASGAVVVSVEDTVILATVVARKEAKPGQDFFPLTVDYIEKTYAAGRIPG 75
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
R G+ + R+I R +R + L Q+II + +
Sbjct: 76 GFFKR------EGKPSEKETLTSRLIDRPIRPLFPEGYLNEVQVIIHVLSVNPEIDPDIP 129
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+ GA AL G V A G + G +++ + + +D
Sbjct: 130 AMIGASAALSLAGI-------------PFNGPVGAARVGYIDGQYVLNPTTSQLKSSQLD 176
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
T++ ++ V+ +E S++ + D+ +I+ ++ +
Sbjct: 177 LVVAGTET-AVLMVE--SEADQLSEEVMLGAVVFGHDQSKAVIEAIHALVRD 225
>gi|114798182|ref|YP_762114.1| polynucleotide phosphorylase/polyadenylase [Hyphomonas neptunium
ATCC 15444]
gi|123128295|sp|Q0BWM9|PNP_HYPNA RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|114738356|gb|ABI76481.1| polyribonucleotide nucleotidyltransferase [Hyphomonas neptunium
ATCC 15444]
Length = 713
Score = 161 bits (407), Expect = 8e-38, Method: Composition-based stats.
Identities = 48/241 (19%), Positives = 91/241 (37%), Gaps = 18/241 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR+ +Q+R I GS L G+T + ATL +E+ + TK
Sbjct: 317 RIDGRKLDQIRPIVAEAGFLPRTHGSSLFTRGETQAICVATLGTSDDEQYIDGLDGTKKE 376
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + R+ G + RAL++V+ I + +
Sbjct: 377 KFMLHYNFPPYSVGETGRMGGAGRREIGHGKL----AWRALKAVLPKHEDFPYTIRMVSE 432
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A + G +A+ D + + + +L+G A+ +
Sbjct: 433 ITESNGSSSMATVCGCSLAMMDAGVPLTRPVSGIAMGLILEGSEFAVLSD---------I 483
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T++G + +Q + A ++D L AK ++
Sbjct: 484 LGDEDHLGDMDFKVAGTENG-VTSLQMDIKVAGITKDIMGKALEQAKGGRMHILGEMGKA 542
Query: 238 I 238
+
Sbjct: 543 L 543
Score = 105 bits (261), Expect = 6e-21, Method: Composition-based stats.
Identities = 38/231 (16%), Positives = 75/231 (32%), Gaps = 20/231 (8%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRST 70
R +++ V++ A+G+ +V++GDT +L TA ++ E
Sbjct: 14 RTLTIETGQVARQADGAVMVQYGDTIVLATAVFAKEAKPGQDFFPLTVNYQEKYFASGRI 73
Query: 71 GNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAI 130
GR + R+I R +R + Q+++ + A+
Sbjct: 74 P--GGFFKREGRPTEKETLTSRLIDRPIRPLFVDGFKHEVQVVVTTLSYDLENDADIIAL 131
Query: 131 TGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDAN 190
GA A G + A G G I++ E ++D
Sbjct: 132 VGASAA-------------LVLSGAPFMGPIGAARVGYKDGQYIINPTIAELEESELDLV 178
Query: 191 FVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
T ++ V+ A A S+D + D + +I ++ +
Sbjct: 179 VAGTTD-AVMMVESQA--AELSEDVMLGAVVAGHDAMQPVIDAI-IALAEK 225
>gi|309792378|ref|ZP_07686846.1| ribonuclease PH [Oscillochloris trichoides DG6]
gi|308225599|gb|EFO79359.1| ribonuclease PH [Oscillochloris trichoides DG6]
Length = 240
Score = 161 bits (407), Expect = 8e-38, Method: Composition-based stats.
Identities = 113/238 (47%), Positives = 152/238 (63%), Gaps = 4/238 (1%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R SGR ++R I + + YAEGS L+ G+T +L A+LE +VP W+R + GW+TA
Sbjct: 7 RQSGRLPTELRSIEILVNAAPYAEGSALISCGNTRVLCAASLEPQVPGWLRGQQRGWVTA 66
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
EY +LPRST R +R GR+QEIQR+IGR+LR+ VDL ALG I +DCDV+QA
Sbjct: 67 EYSLLPRSTHTRTRR--ERSGPSGRTQEIQRLIGRSLRAAVDLEALGECMITVDCDVLQA 124
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
DGGTRTAAITG +VAL L+ + + ++ VAAIS G++ G ++DLDY E
Sbjct: 125 DGGTRTAAITGGYVALALALRKLHAE--GLIATNPIRYAVAAISVGVVEGQMLLDLDYAE 182
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
DS+ D+D N V T SG VEVQG+AE + A+L+LA IA LI +Q+ V+
Sbjct: 183 DSSADLDCNIVQTASGAFVEVQGTAEGMPIDRAQLDALLDLASQGIARLITIQQAVLG 240
>gi|187479141|ref|YP_787166.1| polynucleotide phosphorylase/polyadenylase [Bordetella avium 197N]
gi|123765982|sp|Q2KWI6|PNP_BORA1 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|115423728|emb|CAJ50278.1| polyribonucleotide nucleotidyltransferase [Bordetella avium 197N]
Length = 718
Score = 161 bits (406), Expect = 8e-38, Method: Composition-based stats.
Identities = 48/241 (19%), Positives = 93/241 (38%), Gaps = 18/241 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +R IS+ V A GS L G+T L ATL +E++ +
Sbjct: 320 RIDGRDTRTVRPISVRLGVLPRAHGSALFTRGETQALVVATLGTKQDEQIIDALMGEYRD 379
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y M P +TG + R+ G + R+L V+ I I +
Sbjct: 380 RFMLHYNMPPFATGETGRIGVPKRREIGHGRL----AKRSLVPVLPKPEDFQYTIRIVSE 435
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ G +A+ D + D + +L+ A+ +
Sbjct: 436 ITESNGSSSMASVCGGSLAMMDAGVPITDHVAGVAMGLILENGKFAVLTD---------I 486
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T++G I +Q + +++ L A++ ++ ++
Sbjct: 487 LGDEDHLGDMDFKVAGTENG-ITALQMDIKIQGITKEIMQVALAQAREGRLHILGKMRES 545
Query: 238 I 238
+
Sbjct: 546 L 546
Score = 94.1 bits (232), Expect = 1e-17, Method: Composition-based stats.
Identities = 37/233 (15%), Positives = 76/233 (32%), Gaps = 31/233 (13%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT----KHGWITAEYGMLPR 68
+ L +++ A G+ LV DT +L T +K + T G +P
Sbjct: 16 VVLETGEIARQASGAVLVSVEDTVVLATVVAAKKAKPGQDFFPLTVDYIEKTYAAGRIPG 75
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
R G+ + R+I R LR + Q++I + +
Sbjct: 76 GFFKR------EGKPSEKETLTSRLIDRPLRPLFPEGFYNEVQVVIHTLSVNPEIDPDIP 129
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+ GA A G + A + G +++ + + +D
Sbjct: 130 AMIGASAA-------------LAISGIPFNGPIGAARVAYVEGQYLLNPTASQLKSSKMD 176
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKD----RIADLIKLQKDV 237
T++ ++ V+ A++ S++ + + I + L +D
Sbjct: 177 LVVAGTEN-AVLMVESEAQQ--LSEEIMLGGVVFGHEQMQAAINAIHDLVRDA 226
>gi|158523039|ref|YP_001530909.1| polynucleotide phosphorylase/polyadenylase [Desulfococcus
oleovorans Hxd3]
gi|226702647|sp|A8ZZ59|PNP_DESOH RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|158511865|gb|ABW68832.1| Polyribonucleotide nucleotidyltransferase [Desulfococcus oleovorans
Hxd3]
Length = 721
Score = 161 bits (406), Expect = 9e-38, Method: Composition-based stats.
Identities = 47/242 (19%), Positives = 87/242 (35%), Gaps = 18/242 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +++R IS V GS L G+T +L TL +E+ + +
Sbjct: 314 RIDGRAFDEVRPISCEVGVLPRTHGSALFTRGETQVLGVMTLGSGHDEQRVETLFGDETR 373
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P G + S R G R + V+ I + +
Sbjct: 374 PFMLHYNFPPFCVGEVKRVMGPSRRDIGHGNL----AHRGISYVLPDKETFDYTIRLVSE 429
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
V++++G + + +AL D ++ + + V G A+ +
Sbjct: 430 VLESNGSSSMGTVCSCILALMDGGVPIKAPVSGIAMGLVADGDKVAVLSD---------I 480
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T+ G I +Q + + S++ L+ AKD ++ +
Sbjct: 481 LGDEDHFGDMDFKVTGTEKG-ITALQMDIKIKSLSREILEKALHQAKDGRIHILGKMLEA 539
Query: 238 IS 239
+S
Sbjct: 540 LS 541
Score = 101 bits (250), Expect = 1e-19, Method: Composition-based stats.
Identities = 40/229 (17%), Positives = 77/229 (33%), Gaps = 26/229 (11%)
Query: 13 EISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRN----TKHGWITAEYGMLP 67
++ ++K A G+ LV++G+T +L T + ++ G +P
Sbjct: 14 PFTIKTGRLAKQAAGAALVQYGETIVLVTVAAATEPKEDADFLPLSVEYQEKIYSAGRIP 73
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
+ R GR + R+ R +R + Q+I + +
Sbjct: 74 GNYFRR-----EIGRPSEKETLTCRLTDRPIRPLFPAGYTFETQVITTVLSMDRENDPDV 128
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
+I GA A G +AA+ G L G + + E D+
Sbjct: 129 LSIVGASAA-------------LTISDLPFDGPLAAVRVGRLNGTLVANPTNTELDDCDI 175
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ + SG +V V+G + S+ + + + LI +Q
Sbjct: 176 NIVVAGSRSG-VVMVEGGS--NVVSEAEMLEAIFFGHNALLPLIDIQDQ 221
>gi|82703668|ref|YP_413234.1| polynucleotide phosphorylase/polyadenylase [Nitrosospira
multiformis ATCC 25196]
gi|123740603|sp|Q2Y5X9|PNP_NITMU RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|82411733|gb|ABB75842.1| 3' exoribonuclease [Nitrosospira multiformis ATCC 25196]
Length = 701
Score = 161 bits (406), Expect = 9e-38, Method: Composition-based stats.
Identities = 46/241 (19%), Positives = 96/241 (39%), Gaps = 18/241 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +R I++ + GS L G+T L ATL +E+ ++
Sbjct: 314 RIDGRDTRTVRPITIRTGLLPRTHGSALFTRGETQALVVATLGTGRDEQKIDALQGDYSE 373
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y M P +TG + R+ G + RAL +V+ + + +
Sbjct: 374 RFMLHYNMPPYATGETGRVGTPKRREIGHGRL----AKRALVAVLPSPEEFGYSLRVVSE 429
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ G +AL D ++ + + +G+ A+ +
Sbjct: 430 ITESNGSSSMASVCGGCLALMDAGVPLKGHVAGIAMGLIKEGNRFAVLTD---------I 480
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T++G I +Q + +++ A L A++ ++ + + V
Sbjct: 481 LGDEDHLGDMDFKVAGTENG-ITALQMDIKIQGITKEILHAALVQAREGRMHILAIMRQV 539
Query: 238 I 238
+
Sbjct: 540 L 540
Score = 99.5 bits (246), Expect = 3e-19, Method: Composition-based stats.
Identities = 34/233 (14%), Positives = 73/233 (31%), Gaps = 28/233 (12%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT----KHGWITAEYGMLPR 68
++ +++ A + +V GDT +L T + + + G +P
Sbjct: 14 LTFETGEIARQAHAAIMVSMGDTVVLVTVVGAKSAKQGQDFFPLTVDYQERSYAAGRIPG 73
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
S R GR + R+I R +R + + Q++ +
Sbjct: 74 SFFKR------EGRPSEKEILTSRLIDRPIRPLFPENFYNEVQVVATVLSSDNEVDADIP 127
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+ GA A G + A G + G +++ D ++
Sbjct: 128 AMLGASAA-------------LVLSGIPFNGPIGAARIGYINGEYVLNPDTSALKQTQLN 174
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
T ++ V+ A S+D + ++ I + +++E
Sbjct: 175 LVVAGTRQ-AVLMVESDAME--LSEDVMLGAIVYGHQQMQVAIDAINE-LADE 223
>gi|187923336|ref|YP_001894978.1| polynucleotide phosphorylase/polyadenylase [Burkholderia
phytofirmans PsJN]
gi|226702630|sp|B2T2E3|PNP_BURPP RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|187714530|gb|ACD15754.1| Polyribonucleotide nucleotidyltransferase [Burkholderia
phytofirmans PsJN]
Length = 718
Score = 161 bits (406), Expect = 9e-38, Method: Composition-based stats.
Identities = 46/242 (19%), Positives = 91/242 (37%), Gaps = 18/242 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHG 57
R+ GR +R I + V GS L G+T + AT +E+ +
Sbjct: 322 RIDGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQAMVVATLGTKGDEQNIDALEGEYRE 381
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y M P +TG + + R+ G + RAL + + + I + +
Sbjct: 382 RFMLHYNMPPFATGETGRVGSPKRREIGHGRL----AKRALAACLPSADEFGYSIRVVSE 437
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ G +AL D M+ + +L+G+ A+ +
Sbjct: 438 ITESNGSSSMASVCGGCLALMDAGVPMKAHVAGIAMGLILEGNKFAVLTD---------I 488
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T+ G + +Q + +++ L AK+ ++
Sbjct: 489 LGDEDHLGDMDFKVAGTEQG-VTALQMDIKIQGITKEIMQVALAQAKEGRMHILSKMTSA 547
Query: 238 IS 239
+S
Sbjct: 548 VS 549
Score = 90.3 bits (222), Expect = 2e-16, Method: Composition-based stats.
Identities = 36/233 (15%), Positives = 73/233 (31%), Gaps = 31/233 (13%)
Query: 13 EISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT----KHGWITAEYGMLP 67
++ L +++ A G+ +V DT +L T + + T G +P
Sbjct: 17 KVRLETGEIARQASGAVIVDVEDTVVLATVVGAKTAKPGQDFFPLTVDYLEKTYAAGKIP 76
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R GR I R+I R LR + Q++I + +
Sbjct: 77 GGFFRR------EGRPSEGETLISRLIDRPLRPLFPEGFYNEVQVVIHVLSLNPEIPADI 130
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
A+ GA A G V A + +++ + +
Sbjct: 131 PALIGASAA-------------LAVSGLPFNGPVGAARVAYINNEYVLNPTRPQMKESAL 177
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKD----RIADLIKLQKD 236
D T+ ++ V+ A++ S++ + + I + L ++
Sbjct: 178 DLIVAGTER-AVLMVESEAQQ--LSEEVMLGGVVFGHEQMQIAIDAIHDLVRE 227
>gi|260204601|ref|ZP_05772092.1| ribonuclease PH [Mycobacterium tuberculosis K85]
gi|289574006|ref|ZP_06454233.1| ribonuclease rphA [Mycobacterium tuberculosis K85]
gi|289538437|gb|EFD43015.1| ribonuclease rphA [Mycobacterium tuberculosis K85]
Length = 259
Score = 161 bits (406), Expect = 9e-38, Method: Composition-based stats.
Identities = 110/238 (46%), Positives = 155/238 (65%), Gaps = 1/238 (0%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R GR ++++R + +TR ++ GS L++FG T +L TA++ E VP W + T GW+TA
Sbjct: 4 REDGRLDHELRPVIITRGFTENPAGSVLIEFGHTKVLCTASVTEGVPRWRKATGLGWLTA 63
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
EY MLP +T +R RE+V GR GR+QEI R+IGR+LR+ +DL+ALG I IDCDV+QA
Sbjct: 64 EYAMLPSATHSRSDRESVRGRLSGRTQEISRLIGRSLRACIDLAALGENTIAIDCDVLQA 123
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
DGGTRTAAITGA+VAL D + K + L +AA+S G++ G VDL Y E
Sbjct: 124 DGGTRTAAITGAYVALADA-VTYLSAAGKLSDPRPLSCAIAAVSVGVVDGRIRVDLPYEE 182
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
DS +VD N V TD+G +VE+QG+ E ATF++ +L++A L Q+D ++
Sbjct: 183 DSPAEVDMNVVATDTGTLVEIQGTGEGATFARSTLDKLLDMALGACDTLFAAQRDALA 240
>gi|255019829|ref|ZP_05291905.1| Polyribonucleotide nucleotidyltransferase [Acidithiobacillus caldus
ATCC 51756]
gi|254970758|gb|EET28244.1| Polyribonucleotide nucleotidyltransferase [Acidithiobacillus caldus
ATCC 51756]
Length = 692
Score = 161 bits (406), Expect = 9e-38, Method: Composition-based stats.
Identities = 44/243 (18%), Positives = 90/243 (37%), Gaps = 18/243 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHG 57
R+ GR +R I + + GS L G+T L AT +E++ ++
Sbjct: 313 RIDGRDRTTVRPIEIEVGIMPRTHGSALFTRGETQALVIATLGTKGDEQIVDALQGESRD 372
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P STG + R+ G + RA+ +V+ + + I +
Sbjct: 373 RFMLHYNFPPFSTGETGMVGSPKRREIGHGRL----AKRAVAAVLPSESEFPYSLRIVSE 428
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+++++G + A + GA +AL D ++ + + G A+ +
Sbjct: 429 ILESNGSSSMATVCGASLALMDAGVPLKAPVAGVAMGLIKDGERYAVLTD---------I 479
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T++G + +Q + +++ L A ++ V
Sbjct: 480 LGDEDHLGDMDFKVAGTENG-VTALQMDIKIDGITREIMATALEQAHAGRLHILSKMNAV 538
Query: 238 ISN 240
++
Sbjct: 539 LAQ 541
Score = 103 bits (256), Expect = 3e-20, Method: Composition-based stats.
Identities = 36/233 (15%), Positives = 77/233 (33%), Gaps = 27/233 (11%)
Query: 13 EISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----HGWITAEYGMLP 67
+ L +++ A+G+ LV G+T +L TA ++ + G +P
Sbjct: 14 RLYLETGRMARQADGAVLVTLGETMVLVTAVGRRELKPGQDFFPLTVNYQEKAYAAGRIP 73
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R GR + R+I R LR + L Q+I + +
Sbjct: 74 GGFFKR------EGRPTEKETLTSRLIDRPLRPLFPKGFLNEVQVIATVLSVDQENDPDI 127
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
A+ GA A +G + A G + G +++ + + +
Sbjct: 128 PAMIGASAA-------------LAISGIPFQGPIGAARVGYVDGDFVLNPSFSALARSQL 174
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
D T ++ V+ A+ + + + + +I +++ +
Sbjct: 175 DLVVAGTRQ-AVLMVESEAQE--LPEATMLSAVMFGHESFQPVIACIEELAAE 224
>gi|332187913|ref|ZP_08389646.1| polyribonucleotide nucleotidyltransferase [Sphingomonas sp. S17]
gi|332012074|gb|EGI54146.1| polyribonucleotide nucleotidyltransferase [Sphingomonas sp. S17]
Length = 773
Score = 161 bits (406), Expect = 9e-38, Method: Composition-based stats.
Identities = 54/243 (22%), Positives = 91/243 (37%), Gaps = 18/243 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKHG 57
R+ GR Q+R I A GS L G+T + T TL E++ + +
Sbjct: 314 RIDGRSTTQIRPIESEVHFLPRAHGSALFTRGETQTIATTTLGTKDAEQMIDGLNGLSYQ 373
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + A R+ G + RAL V+ I + D
Sbjct: 374 HFMLHYNFPPYSVGEVGRFGAPGRREIGHGKL----AWRALHPVLPSKEEFPYTIRVTSD 429
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A + G ++L D ++ + + +L+G AI +
Sbjct: 430 ITESNGSSSMATVCGGSLSLMDAGVPLKRPVSGIAMGLILEGKDYAILSD---------I 480
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T G I +Q + A +++ F A L AKD A ++
Sbjct: 481 LGDEDHLGDMDFKVAGTSEG-ITTMQMDIKIAGITKEIFEAALAQAKDGRAHILGEMNKA 539
Query: 238 ISN 240
+
Sbjct: 540 LGE 542
Score = 104 bits (259), Expect = 1e-20, Method: Composition-based stats.
Identities = 34/226 (15%), Positives = 67/226 (29%), Gaps = 27/226 (11%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT----KHGWITAEYGMLPR 68
++L V++ A+G+ + G+T +L T + V + + G +P
Sbjct: 16 LTLETGKVARQADGAVIATLGETVVLCAVTAAKNVKEGQDFFPLTVHYQEKFSSAGRIPG 75
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
R + R I R+I R +R + I +
Sbjct: 76 GFFKRERGA------TERETLISRLIDRPIRPLFPEGFYNEINCIAQVLSYDGENEPDIL 129
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+ A A G + A G G ++ E ++D
Sbjct: 130 AMIAASAA-------------LTISGVPFMGPIGAARVGYKNGEYQLNPSDSEVLEGELD 176
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
T ++ V+ A+ S++ + A +I+
Sbjct: 177 LVVAATHD-AVMMVESEAKE--LSEEVMLGAVMFAHKASGQVIEAI 219
>gi|308513305|ref|NP_952644.3| polynucleotide phosphorylase/polyadenylase [Geobacter
sulfurreducens PCA]
gi|81702393|sp|Q74CS9|PNP_GEOSL RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|39983574|gb|AAR34967.1| polyribonucleotide nucleotidyltransferase [Geobacter sulfurreducens
PCA]
Length = 697
Score = 161 bits (406), Expect = 9e-38, Method: Composition-based stats.
Identities = 49/242 (20%), Positives = 88/242 (36%), Gaps = 18/242 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTT----ATLEEKVPMWIRNTKHG 57
R+ GR +R IS+ + A GS L G+T L +++E+ +
Sbjct: 313 RIDGRDTTTIRPISIEVSMLPRAHGSALFTRGETQALVASTLGTSIDEQRIDSLYGETRK 372
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G R A R+ G RAL VV I I D
Sbjct: 373 RFLLHYNFPPFSVGETSFRLAPGRREIGHGML----AERALERVVPKHEDFPYTIRIVSD 428
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+++++G + A + G +A+ D ++ + + +G AI +
Sbjct: 429 ILESNGSSSMATVCGGALAMMDAGVPIKAPVAGIAMGLIKEGEGIAILSD---------I 479
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T++G + +Q + +++ L A+D ++
Sbjct: 480 LGDEDHLGDMDFKVAGTEAG-VTAIQMDIKITGVTREIMEKALLQARDGRLHILGKMNQA 538
Query: 238 IS 239
I+
Sbjct: 539 IA 540
Score = 101 bits (251), Expect = 9e-20, Method: Composition-based stats.
Identities = 43/228 (18%), Positives = 74/228 (32%), Gaps = 27/228 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTKHGWITAEYGML 66
R I++ +K A G+ +V GDT +L TA + E + + G +
Sbjct: 13 RTITIATGKWAKQASGAVVVSCGDTVVLVTAVATKSAREGQDFFPLTVNYQEKAYAGGKI 72
Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
P R GR R I R +R + S L QI+ D
Sbjct: 73 PGGFFKR------EGRPSDNETLTSRFIDRPIRPLFPESFLNDTQIMATVVSADQDNDPG 126
Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
A+ GA A G +A + G + G + + + D
Sbjct: 127 ILAMIGASAA-------------LEVSDIPFLGPIAGVKVGRVDGQFVCNPTVEQLEKSD 173
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
++ + ++ V+G A A S+ + + +I+ Q
Sbjct: 174 LEIVVAASRD-AVIMVEGGAAEA--SEKDVLEAIFFGHAAVQPIIEAQ 218
>gi|296285001|ref|ZP_06862999.1| polynucleotide phosphorylase/polyadenylase [Citromicrobium
bathyomarinum JL354]
Length = 769
Score = 161 bits (406), Expect = 9e-38, Method: Composition-based stats.
Identities = 48/243 (19%), Positives = 92/243 (37%), Gaps = 18/243 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKHG 57
R+ GR+ +++R I + GS L G+T + T TL E++ + +
Sbjct: 318 RIDGRKLDEVRPIEAIVGLLPRTHGSSLFTRGETQAICTTTLGTKDAEQMIDGLEGLSYN 377
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + R+ G + RAL V+ I + D
Sbjct: 378 HFMLHYNFPPYSVGEVGRFGFTGRREIGHGKL----AWRALHPVLPSHEDFPYTIRVLSD 433
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A + G +++ D +E + + +L+G A+ +
Sbjct: 434 ITESNGSSSMATVCGGCLSMMDAGVPIERPVSGIAMGLILEGDDFAVLSD---------I 484
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D ++SG I +Q + A +Q+ L AK A ++
Sbjct: 485 LGDEDHLGDMDFKVAGSESG-ITSLQMDIKVAGITQEIMAKALEQAKAGRAHILGEMTKA 543
Query: 238 ISN 240
+ +
Sbjct: 544 LGS 546
Score = 104 bits (259), Expect = 1e-20, Method: Composition-based stats.
Identities = 34/235 (14%), Positives = 75/235 (31%), Gaps = 30/235 (12%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----HGWITAEYGMLPR 68
++L +++ A+G+ L +G+T +L T +KV + + G +P
Sbjct: 16 LTLETGRIARQADGAVLATYGETVVLCAVTAAKKVKEGQDFFPLTVNYQEKFSAAGRIPG 75
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
R R + + R+I R +R + +I +
Sbjct: 76 GFFKR------EARPTEKETLVSRLIDRPVRPLFPEGFYNEINVIAQVLSFDGETEPDIV 129
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE--DSTID 186
A+ A A G +A+ G G ++ D
Sbjct: 130 AMIAASAA-------------LTISGVPFMGPIASARVGFRNGEYELNPTQSAALDDEGR 176
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
+D T+ ++ V+ A+ +++ + A D +I + ++ +
Sbjct: 177 LDLVVAATND-AVMMVESEAKE--LTEEEMLGAVMFAHDECRKVIGAIIE-LAEQ 227
>gi|160877892|pdb|3B4T|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Rnase Ph,
The Mycobacterium Tuberculosis Structural Genomics
Consortium Target Rv1340
gi|160877893|pdb|3B4T|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis Rnase Ph,
The Mycobacterium Tuberculosis Structural Genomics
Consortium Target Rv1340
gi|160877894|pdb|3B4T|C Chain C, Crystal Structure Of Mycobacterium Tuberculosis Rnase Ph,
The Mycobacterium Tuberculosis Structural Genomics
Consortium Target Rv1340
gi|160877895|pdb|3B4T|D Chain D, Crystal Structure Of Mycobacterium Tuberculosis Rnase Ph,
The Mycobacterium Tuberculosis Structural Genomics
Consortium Target Rv1340
gi|160877896|pdb|3B4T|E Chain E, Crystal Structure Of Mycobacterium Tuberculosis Rnase Ph,
The Mycobacterium Tuberculosis Structural Genomics
Consortium Target Rv1340
gi|160877897|pdb|3B4T|F Chain F, Crystal Structure Of Mycobacterium Tuberculosis Rnase Ph,
The Mycobacterium Tuberculosis Structural Genomics
Consortium Target Rv1340
Length = 262
Score = 161 bits (406), Expect = 9e-38, Method: Composition-based stats.
Identities = 110/238 (46%), Positives = 155/238 (65%), Gaps = 1/238 (0%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R GR ++++R + +TR ++ GS L++FG T +L TA++ E VP W + T GW+TA
Sbjct: 7 REDGRLDHELRPVIITRGFTENPAGSVLIEFGHTKVLCTASVTEGVPRWRKATGLGWLTA 66
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
EY MLP +T +R RE+V GR GR+QEI R+IGR+LR+ +DL+ALG I IDCDV+QA
Sbjct: 67 EYAMLPSATHSRSDRESVRGRLSGRTQEISRLIGRSLRACIDLAALGENTIAIDCDVLQA 126
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
DGGTRTAAITGA+VAL D + K + L +AA+S G++ G VDL Y E
Sbjct: 127 DGGTRTAAITGAYVALADA-VTYLSAAGKLSDPRPLSCAIAAVSVGVVDGRIRVDLPYEE 185
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
DS +VD N V TD+G +VE+QG+ E ATF++ +L++A L Q+D ++
Sbjct: 186 DSRAEVDMNVVATDTGTLVEIQGTGEGATFARSTLDKLLDMALGACDTLFAAQRDALA 243
>gi|306843586|ref|ZP_07476187.1| polynucleotide phosphorylase/polyadenylase [Brucella sp. BO1]
gi|306276277|gb|EFM57977.1| polynucleotide phosphorylase/polyadenylase [Brucella sp. BO1]
Length = 714
Score = 161 bits (406), Expect = 9e-38, Method: Composition-based stats.
Identities = 45/243 (18%), Positives = 87/243 (35%), Gaps = 18/243 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR + +R I + GS L G+T + ATL +E++ + T
Sbjct: 317 RIDGRDLSTVRPIVSEVGILPRTHGSALFTRGETQAIVVATLGTGEDEQMIDALTGTYKE 376
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + + R+ G + RA+ ++ + I +
Sbjct: 377 TFMLHYNFPPYSVGETGRMGSPGRREIGHGKL----AWRAIHPMLPAAEQFPYTIRAVSE 432
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A + G +AL D + + + +G A+ +
Sbjct: 433 ITESNGSSSMATVCGTSLALMDAGVPIVRPVAGIAMGLIKEGERFAVLSD---------I 483
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T+ G I +Q + +++ L AK ++
Sbjct: 484 LGDEDHLGDMDFKVAGTEFG-ITSLQMDIKIDGITEEIMKVALEQAKGGRVHILGEMAKA 542
Query: 238 ISN 240
IS+
Sbjct: 543 ISS 545
Score = 107 bits (266), Expect = 2e-21, Method: Composition-based stats.
Identities = 33/228 (14%), Positives = 71/228 (31%), Gaps = 27/228 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----HGWITAEYGML 66
R ++L +++ A+G+ L +G+T +L T ++ + T G +
Sbjct: 14 RPLTLETGKIARQADGAVLATYGETAVLATVVSAKEPKPGQDFFPLTVNYQEKTYAAGKI 73
Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
P R GR + R+I R +R + Q++I +
Sbjct: 74 PGGYFKR------EGRPSENETLVSRLIDRPIRPLFVDGYKNDTQVVITVLQHDLENNPD 127
Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
++ A A G ++ G + G +++ + E
Sbjct: 128 ILSMVAASAA-------------LTISGVPFMGPISGARVGYIDGEYVLNPNIDEMPESK 174
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
+D T ++ V+ A+ +D + +I
Sbjct: 175 LDLVVAGTSE-AVLMVESEAQE--LPEDVMLGAVMFGHKSFQPVIDAI 219
>gi|153207996|ref|ZP_01946530.1| polyribonucleotide nucleotidyltransferase [Coxiella burnetii 'MSU
Goat Q177']
gi|165918905|ref|ZP_02218991.1| polyribonucleotide nucleotidyltransferase [Coxiella burnetii RSA
334]
gi|212218334|ref|YP_002305121.1| polynucleotide phosphorylase/polyadenylase [Coxiella burnetii
CbuK_Q154]
gi|226702641|sp|B6J6S7|PNP_COXB1 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|120576196|gb|EAX32820.1| polyribonucleotide nucleotidyltransferase [Coxiella burnetii 'MSU
Goat Q177']
gi|165917375|gb|EDR35979.1| polyribonucleotide nucleotidyltransferase [Coxiella burnetii RSA
334]
gi|212012596|gb|ACJ19976.1| polyribonucleotide nucleotidyltransferase [Coxiella burnetii
CbuK_Q154]
Length = 696
Score = 161 bits (406), Expect = 1e-37, Method: Composition-based stats.
Identities = 42/241 (17%), Positives = 87/241 (36%), Gaps = 18/241 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +R I++ V + GS L G+T L TL + + + +
Sbjct: 318 RIDGRDTKTVRPITVKVGVLPRSHGSALFTRGETQALVVTTLGTERDAQSIDDLDGDRQE 377
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P G R+ G + RA+ VV I + +
Sbjct: 378 EFIFHYNFPPFCVGEVGFMSGPKRREIGHGRL----AKRAVVPVVPTLDKFPYVIRVVSE 433
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+++++G + A++ G+ +AL D + + + + A+ +
Sbjct: 434 ILESNGSSSMASVCGSSLALMDAGVPTKAPVAGIAMGLIKENDKYAVLSD---------I 484
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T +G + +Q + +++ L+ AK+ ++ + V
Sbjct: 485 LGDEDHLGDMDFKVAGTSNG-VTALQMDIKIEGITKEIMEQALDQAKEGRLHILSIMNKV 543
Query: 238 I 238
+
Sbjct: 544 L 544
Score = 95.3 bits (235), Expect = 7e-18, Method: Composition-based stats.
Identities = 41/233 (17%), Positives = 73/233 (31%), Gaps = 27/233 (11%)
Query: 13 EISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGMLP 67
E++ +++ A G+ +V+ GDT LL + EE + + T G +P
Sbjct: 14 EVTFETGEMARQATGAVVVRMGDTVLLVSVVAKKEAEEGRDFFPLTVNYQEKTYAAGKIP 73
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R GR + R+I R LR + Q+I + + T
Sbjct: 74 GGYFKR------EGRPTEKETLTSRLIDRPLRPLFPKGFTNEVQVIATVLSVDSKVPTDI 127
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
AI GA A G + A G G +++ E +
Sbjct: 128 PAILGASAA-------------IGLSGIPFNGSLGAARVGYRGGEYLLNPSLDELKDSAL 174
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
D T ++ V+ A+ + + + I+ + I
Sbjct: 175 DLVVAGTRD-AVLMVESEAQE--LPESVMLGAVLHGHQAMQVAIQAIAEFIQE 224
>gi|323138133|ref|ZP_08073206.1| polyribonucleotide nucleotidyltransferase [Methylocystis sp. ATCC
49242]
gi|322396595|gb|EFX99123.1| polyribonucleotide nucleotidyltransferase [Methylocystis sp. ATCC
49242]
Length = 717
Score = 161 bits (406), Expect = 1e-37, Method: Composition-based stats.
Identities = 48/242 (19%), Positives = 92/242 (38%), Gaps = 18/242 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
+R+ GR +R I V GS L G+T L ATL +E+ + T
Sbjct: 315 IRIDGRDVKTVRPIVAEVGVLPRTHGSALFTRGETQALVVATLGTGEDEQFVDSLEGTYK 374
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P S G + + R+ G + RA+R ++ +A + +
Sbjct: 375 ERFLLHYNFPPYSVGETGRMGSPGRREIGHGKL----AWRAIRPMLPAAAEFPYTLRVVS 430
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
++ +++G + A + G +AL D ++ + + +L+G A+
Sbjct: 431 EITESNGSSSMATVCGTSLALMDAGVPLKAPTAGIAMGLILEGERFAVLSD--------- 481
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T +G + +Q + A +++ L AKD ++
Sbjct: 482 ILGDEDHLGDMDFKVAGTSNG-VTSLQMDIKIAGITEEIMKVALAQAKDGRLHILGEMAK 540
Query: 237 VI 238
+
Sbjct: 541 AL 542
Score = 107 bits (267), Expect = 1e-21, Method: Composition-based stats.
Identities = 34/224 (15%), Positives = 65/224 (29%), Gaps = 19/224 (8%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRST 70
R++ L V++ A+G+ + +G+T +L T + E
Sbjct: 14 RKLVLETGKVARQADGAVMASWGETTVLATVVSAKAPKPGQDFFPLTVNYQEKAFAAGRI 73
Query: 71 GNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAI 130
GR R + R+I R +R + Q+I+ + A+
Sbjct: 74 P--GGYFKREGRPSERETLVSRLIDRPIRPLFPDGYRCDTQVIVTVLSHDLENDPDILAM 131
Query: 131 TGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDAN 190
A A G V G + G ++ E D+D
Sbjct: 132 VAASAA-------------LTLSGVPFMGPVGGARVGYINGQLKLNPTIEEMKLSDLDLV 178
Query: 191 FVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
T ++ V+ A+ S++ + +I
Sbjct: 179 VAGTSD-AVLMVESEAKE--LSEETMLEAVMTGHRGFQPVIDAI 219
>gi|206890011|ref|YP_002249618.1| polyribonucleotide nucleotidyltransferase [Thermodesulfovibrio
yellowstonii DSM 11347]
gi|257096715|sp|B5YHN2|PNP_THEYD RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|206741949|gb|ACI21006.1| polyribonucleotide nucleotidyltransferase [Thermodesulfovibrio
yellowstonii DSM 11347]
Length = 710
Score = 161 bits (406), Expect = 1e-37, Method: Composition-based stats.
Identities = 51/244 (20%), Positives = 89/244 (36%), Gaps = 18/244 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
+R GR+ +++R I+ + GS L G+T L TL +E+ +
Sbjct: 319 IRADGRKSDEIRPITCMIGILPRVHGSALFTRGETQALVATTLGTSEDEQKVDSLEGEIF 378
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y LP S G A R+ G RAL V+ I +
Sbjct: 379 KTFMLHYNFLPFSVGEVKPLRAPGRREIGHGYL----AERALSYVIPSKDEFPYTIRVVS 434
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
D+++++G + A + GA ++L D ++ + + +G +
Sbjct: 435 DILESNGSSSMATVCGATLSLMDAGVPIKAPVAGVAMGLIKEGDKTVVLTD--------- 485
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T+ G I Q + + S + F L AK ++K +
Sbjct: 486 ILGMEDHYGDMDFKVAGTEKG-ITAFQMDVKISGISYEIFKKALKQAKQARLFILKKMAE 544
Query: 237 VISN 240
IS
Sbjct: 545 TISE 548
Score = 111 bits (276), Expect = 1e-22, Method: Composition-based stats.
Identities = 48/229 (20%), Positives = 78/229 (34%), Gaps = 27/229 (11%)
Query: 13 EISLTRRV-SKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRN----TKHGWITAEYGMLP 67
++ L + +K GS L K+GDT++L T E+ + + G +P
Sbjct: 11 KLVLQTGIFAKQTNGSVLAKYGDTYVLCTVVAEKTPKEGLDFVPLTIDYQEKAYSAGKIP 70
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R G+ R + R+I R +R + Q I +
Sbjct: 71 GGFFKR------EGKPTDREILVSRLIDRPVRPLFPDGFNYETQGIASVLSYGDENIADI 124
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
+I G A G VAA+ GM+ I++ D E +
Sbjct: 125 LSIIGISSA-------------LTISDIPFNGPVAAVRVGMVEEEFILNPDNDEAEKSIL 171
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ T+ + V+G A A S++ L A I +I LQK
Sbjct: 172 NLVVAGTEE-AVTMVEGGA--AECSEETLVEALKFAHTHIKKIIALQKK 217
>gi|256375162|ref|YP_003098822.1| ribonuclease PH [Actinosynnema mirum DSM 43827]
gi|255919465|gb|ACU34976.1| ribonuclease PH [Actinosynnema mirum DSM 43827]
Length = 254
Score = 161 bits (406), Expect = 1e-37, Method: Composition-based stats.
Identities = 111/240 (46%), Positives = 158/240 (65%), Gaps = 1/240 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+R GR ++ +R+I +TR ++ GS L++FG+T +L A++ E VP W + GW+T
Sbjct: 2 LRTDGRNDDVLRDIRITRGFQQWPAGSVLIEFGNTRVLCAASVTEGVPRWRSGSGLGWVT 61
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEY MLP +T R RE++ GR GGR+ EI R+IGR+LR+ +DL+ALG I+IDCDVIQ
Sbjct: 62 AEYAMLPSATHTRGDRESIKGRVGGRTHEISRLIGRSLRACIDLAALGENTIVIDCDVIQ 121
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTAAITGA+VAL D + + Q L ++A+S G++ G +DL Y
Sbjct: 122 ADGGTRTAAITGAYVALADA-VTWLGAAGRLADPQPLSCAISAVSVGVVDGRVRLDLPYE 180
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
EDS +VD N V TD+G +VEVQG+ E ATF++ ML+LA A+L +LQ + ++
Sbjct: 181 EDSRAEVDMNVVATDAGTLVEVQGTGEGATFARSTLDRMLDLALQGCAELNRLQTEALAQ 240
>gi|121602640|ref|YP_989507.1| polynucleotide phosphorylase/polyadenylase [Bartonella
bacilliformis KC583]
gi|187470938|sp|A1UU54|PNP_BARBK RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|120614817|gb|ABM45418.1| polyribonucleotide nucleotidyltransferase [Bartonella bacilliformis
KC583]
Length = 733
Score = 161 bits (406), Expect = 1e-37, Method: Composition-based stats.
Identities = 45/243 (18%), Positives = 85/243 (34%), Gaps = 18/243 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR + +R I + GS L G+T L ATL +E+ +
Sbjct: 317 RIDGRDLSTVRPIQSEVGILPRTHGSALFTRGETQALVVATLGTSEDEQYVDLLTGVCKE 376
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + + R+ G + RA+ ++ I + +
Sbjct: 377 TFLLHYNFPPFSVGETGRLSSPGRREIGHGKL----AWRAIHPMLPTKEAFPYTIRVVSE 432
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A + G +AL D + + + +G I +
Sbjct: 433 ITESNGSSSMATVCGTSLALMDAGVPLARPVAGIAMGLIKEGERFVILSD---------I 483
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T +G I +Q + ++D L AKD ++
Sbjct: 484 LGDEDHLGDMDFKVAGTKNG-ITSLQMDIKIDGITEDIMKIALEQAKDGRNHILNEMAKA 542
Query: 238 ISN 240
+++
Sbjct: 543 LTD 545
Score = 111 bits (278), Expect = 6e-23, Method: Composition-based stats.
Identities = 33/228 (14%), Positives = 71/228 (31%), Gaps = 27/228 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----HGWITAEYGML 66
R +++ V++ A+G+ + +G+T +L T + + T G +
Sbjct: 14 RPLTIETGRVARQADGAVVATYGETVVLATVVSAKAPKPDQDFFPLTVNYQEKTYAVGKI 73
Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
P R R I R+I R +R + Q+I+ +
Sbjct: 74 PGGYFKR------ESRPSENETLISRLIDRPIRPLFVDDYKNDTQVIVSVIQHDLENNPD 127
Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
++ A A G +A G G+ +++ E
Sbjct: 128 ILSMIAASAA-------------LTLSGIPFMGPIAGARVGYCNGHYVLNPTLDEMPESK 174
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
+D T++ ++ V+ A S++ + + +I
Sbjct: 175 LDLVVAGTEN-AVLMVESEAHE--LSEEVMLGAITFGQKGFQPVIDAI 219
>gi|319787423|ref|YP_004146898.1| polyribonucleotide nucleotidyltransferase [Pseudoxanthomonas
suwonensis 11-1]
gi|317465935|gb|ADV27667.1| polyribonucleotide nucleotidyltransferase [Pseudoxanthomonas
suwonensis 11-1]
Length = 701
Score = 161 bits (406), Expect = 1e-37, Method: Composition-based stats.
Identities = 39/242 (16%), Positives = 85/242 (35%), Gaps = 18/242 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
+R+ GR + +R IS+ V GS + G+T + TL + ++ +
Sbjct: 315 VRIDGRALDTVRPISVKTGVLPRTHGSAMFTRGETQAIVVTTLGTTRDGQIIDAVSGEYK 374
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P S G + A R+ G + R + +V+ + +
Sbjct: 375 ENFLFHYNFPPYSVGECGRFGAPKRREIGHGRL----AKRGVLAVMPSIEEFPYTVRVVS 430
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
++ +++G + A++ G+ +AL D ++ + V + +
Sbjct: 431 EITESNGSSSMASVCGSSLALMDAGVPVKAPVAGIAMGLVKEDDRFVVLSD--------- 481
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T G + +Q + +++ L AK ++
Sbjct: 482 ILGDEDHLGDMDFKVAGTADG-VSALQMDIKIEGITEEIMKQALEQAKAGRLHILGEMAK 540
Query: 237 VI 238
+
Sbjct: 541 AL 542
Score = 102 bits (253), Expect = 6e-20, Method: Composition-based stats.
Identities = 45/232 (19%), Positives = 81/232 (34%), Gaps = 27/232 (11%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTKHGWITAEYGMLPR 68
++L V++ A GS +VK DT LL TA + E + + G +P
Sbjct: 15 VTLETGEVARQASGSVIVKMDDTVLLVTAVAAKSAREGQDFFPLTVDYQEKFYAGGRIPG 74
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
R GR + I R+I R +R + QII + +
Sbjct: 75 GFFKR------EGRPTEKETLISRLIDRPIRPLFPEDYKNEVQIIATVMSLNPEIDGDIP 128
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+ GA AL KG + A G G I++ E + ++
Sbjct: 129 ALIGASAALSLAGT-------------PFKGPIGAAKVGYKDGQYILNPSASELAESKLE 175
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
T + ++ V+ +E A S++ + + +I ++++
Sbjct: 176 LVVAGTAN-AVLMVE--SEAALLSEEVMLGAVTFGHREMQKVINAINELVAE 224
>gi|329947440|ref|ZP_08294644.1| tRNA nucleotidyltransferase [Actinomyces sp. oral taxon 170 str.
F0386]
gi|328525190|gb|EGF52241.1| tRNA nucleotidyltransferase [Actinomyces sp. oral taxon 170 str.
F0386]
Length = 264
Score = 161 bits (406), Expect = 1e-37, Method: Composition-based stats.
Identities = 107/240 (44%), Positives = 147/240 (61%), Gaps = 2/240 (0%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R GR +++R +++TR +AEGS LV FG T +L A+ E VP W + + GW+TA
Sbjct: 8 RKDGRAVDELRPVTMTRHWLDHAEGSVLVTFGRTRVLCAASFTEGVPRWRKGSGEGWVTA 67
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
EY MLPR+ R RE+V G+ GGR+ EI R+IGR+LR ++D+SALG I +DCDV+QA
Sbjct: 68 EYAMLPRAGSERSGRESVRGKVGGRTHEISRLIGRSLRGIIDVSALGENTIALDCDVLQA 127
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQL--SQVLKGHVAAISCGMLCGYPIVDLDY 179
DGGTRTAAITGA+VAL D + + VL ++AIS G++ G P +DL Y
Sbjct: 128 DGGTRTAAITGAYVALADAVTWGTERGLIKARSGKPVLSDSLSAISVGIIDGVPCLDLPY 187
Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
ED D N V T G +EVQG+AE A F + ++L+LA L LQ+ ++
Sbjct: 188 EEDVRAQTDMNVVQTGDGRFIEVQGTAEHAPFDRSELGSLLDLAATGNTRLAALQRRALA 247
>gi|209518519|ref|ZP_03267340.1| Polyribonucleotide nucleotidyltransferase [Burkholderia sp. H160]
gi|209501064|gb|EEA01099.1| Polyribonucleotide nucleotidyltransferase [Burkholderia sp. H160]
Length = 711
Score = 161 bits (406), Expect = 1e-37, Method: Composition-based stats.
Identities = 46/242 (19%), Positives = 91/242 (37%), Gaps = 18/242 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHG 57
R+ GR +R I + V GS L G+T L AT +E+ +
Sbjct: 322 RIDGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQALVVATLGTKGDEQSIDALEGEYRE 381
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y M P +TG + + R+ G + RAL + + + I + +
Sbjct: 382 RFMLHYNMPPFATGETGRVGSPKRREIGHGRL----AKRALVACLPSADEFGYSIRVVSE 437
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ G +AL D M+ + +L+G+ A+ +
Sbjct: 438 ITESNGSSSMASVCGGCLALMDAGVPMKAHVAGIAMGLILEGNRFAVLTD---------I 488
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T+ G + +Q + +++ L AK+ ++
Sbjct: 489 LGDEDHLGDMDFKVAGTEQG-VTALQMDIKIQGITKEIMQVALAQAKEGRMHILGKMTSA 547
Query: 238 IS 239
++
Sbjct: 548 VA 549
Score = 95.3 bits (235), Expect = 7e-18, Method: Composition-based stats.
Identities = 35/233 (15%), Positives = 73/233 (31%), Gaps = 27/233 (11%)
Query: 13 EISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT----KHGWITAEYGMLP 67
+ L +++ A G+ +V DT +L T + + T G +P
Sbjct: 17 NVRLETGEIARQASGAVIVDVEDTVVLATVVGAKTAKPGQDFFPLTVDYLEKTYAAGKIP 76
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R GR I R+I R LR + Q++I + +
Sbjct: 77 GGFFRR------EGRPSEGETLISRLIDRPLRPLFPEGFYNEVQVVIHVLSLNPEIPADI 130
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
A+ GA A G V A + +++ + +
Sbjct: 131 PALIGASAA-------------LAVSGLPFNGPVGAARVAYINNEYVLNPTRLQMKESAL 177
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
D T+ ++ V+ A++ S++ + +++ I +++
Sbjct: 178 DLVVAGTER-AVLMVESEAQQ--LSEEVMLGAVVFGHEQMQTAIDAIHELVRE 227
>gi|56551445|ref|YP_162284.1| polynucleotide phosphorylase/polyadenylase [Zymomonas mobilis
subsp. mobilis ZM4]
gi|260752942|ref|YP_003225835.1| polynucleotide phosphorylase/polyadenylase [Zymomonas mobilis
subsp. mobilis NCIMB 11163]
gi|81355362|sp|Q5NQ32|PNP_ZYMMO RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|56543019|gb|AAV89173.1| Polyribonucleotide nucleotidyltransferase [Zymomonas mobilis subsp.
mobilis ZM4]
gi|258552305|gb|ACV75251.1| Polyribonucleotide nucleotidyltransferase [Zymomonas mobilis subsp.
mobilis NCIMB 11163]
Length = 748
Score = 161 bits (406), Expect = 1e-37, Method: Composition-based stats.
Identities = 50/243 (20%), Positives = 87/243 (35%), Gaps = 18/243 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKHG 57
R+ GR +R I GS L G+T L + TL E++ + +
Sbjct: 313 RIDGRDLKTVRPIRSQVGFLPRTHGSALFTRGETQALVSTTLGTADAEQMIDGLTGLHYE 372
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + A R+ G + RAL V+ A I + D
Sbjct: 373 RFMLHYNFPPYSVGEVGRFGAPGRREIGHGKL----AWRALHPVLPSKADFPYTIRVLSD 428
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A + G +AL D + + + +L+ AI ++
Sbjct: 429 ITESNGSSSMATVCGGCLALMDAGVPLTRPVSGIAMGLILEKDGFAILSDIM-------- 480
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T+ G I +Q + A +++ L AK A ++
Sbjct: 481 -GDEDHLGDMDFKVAGTEKG-ITSLQMDIKVAGITEEIMQKALEQAKGGRAHILGEMSKA 538
Query: 238 ISN 240
+
Sbjct: 539 LGE 541
Score = 98.8 bits (244), Expect = 6e-19, Method: Composition-based stats.
Identities = 35/227 (15%), Positives = 71/227 (31%), Gaps = 27/227 (11%)
Query: 13 EISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT----KHGWITAEYGMLP 67
+++L V++ A+G+ + G+T +L T + V + + G +P
Sbjct: 15 KLTLETGQVARQADGAVIATLGETVVLCAVTAAKTVKEGQDFFPLTVHYQEKYSAAGRIP 74
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R + R I R+I R +R + +I +
Sbjct: 75 GGFFKRERGA------TERETLISRLIDRPIRPLFPEGFYNETLVIAQVMSYDGENEPDI 128
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
A+ A AL + A G G I++ + D+
Sbjct: 129 LAMIAASAALALSGVPFLG-------------PIGAARVGYQDGEFILNPTLEQLEKSDL 175
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
D T ++ V+ A ++ ++ A + + +IK
Sbjct: 176 DLVVGATRD-AVMMVESEANE--LPEEVMLNAVSFAHESLQPVIKAI 219
>gi|15963997|ref|NP_384350.1| polynucleotide phosphorylase/polyadenylase [Sinorhizobium meliloti
1021]
gi|307306409|ref|ZP_07586153.1| polyribonucleotide nucleotidyltransferase [Sinorhizobium meliloti
BL225C]
gi|307319296|ref|ZP_07598725.1| polyribonucleotide nucleotidyltransferase [Sinorhizobium meliloti
AK83]
gi|81635311|sp|Q92SW0|PNP_RHIME RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|15073173|emb|CAC41681.1| Probable polyribonucleotide nucleotidyltransferase [Sinorhizobium
meliloti 1021]
gi|306895132|gb|EFN25889.1| polyribonucleotide nucleotidyltransferase [Sinorhizobium meliloti
AK83]
gi|306902251|gb|EFN32848.1| polyribonucleotide nucleotidyltransferase [Sinorhizobium meliloti
BL225C]
Length = 717
Score = 161 bits (406), Expect = 1e-37, Method: Composition-based stats.
Identities = 44/243 (18%), Positives = 85/243 (34%), Gaps = 18/243 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +R I + GS L G+T + ATL +E+ +
Sbjct: 317 RIDGRDLVTVRPIVAEVGILPRTHGSALFTRGETQAIVVATLGTGEDEQYVDSLTGMYKE 376
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + + R+ G + RA+ ++ + + + +
Sbjct: 377 NFMLHYNFPPYSVGETGRMGSPGRREIGHGKL----AWRAIHPMLPTAEQFPYTLRVVSE 432
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A + G +AL D + + + + A+ +
Sbjct: 433 ITESNGSSSMATVCGTSLALMDAGVPLAKPVAGIAMGLIKEDDRFAVLSD---------I 483
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D TD+G I +Q + +++ LN AK ++
Sbjct: 484 LGDEDHLGDMDFKVAGTDAG-ITSLQMDIKIEGITEEIMGVALNQAKGGRLHILGEMAKA 542
Query: 238 ISN 240
IS
Sbjct: 543 ISE 545
Score = 104 bits (259), Expect = 1e-20, Method: Composition-based stats.
Identities = 33/227 (14%), Positives = 67/227 (29%), Gaps = 27/227 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----HGWITAEYGML 66
R + L +++ A+G+ L +G+T +L T + + T G +
Sbjct: 14 RPLKLETGKIARQADGAVLATYGETVVLATVVSAKAPKPGQDFFPLTVNYQEKTYAAGKI 73
Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
P R GR + R+I R +R + Q+II +
Sbjct: 74 PGGYFKR------EGRPSENETLVSRLIDRPIRPLFPDGYKNDTQVIITVMQHDLENNPD 127
Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
+ + + G V G + G +++ E
Sbjct: 128 V-------------VAMVAASAALTLSGVPFMGPVGGARVGYINGEYVLNPHLDEMDEST 174
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
+D T ++ V+ A+ +D + + +I
Sbjct: 175 LDLVVAGTQE-AVLMVESEAKE--LPEDVMLGAVVFGQKGFQPVIDA 218
>gi|89070994|ref|ZP_01158217.1| polyribonucleotide nucleotidyltransferase [Oceanicola granulosus
HTCC2516]
gi|89043457|gb|EAR49672.1| polyribonucleotide nucleotidyltransferase [Oceanicola granulosus
HTCC2516]
Length = 710
Score = 161 bits (406), Expect = 1e-37, Method: Composition-based stats.
Identities = 45/243 (18%), Positives = 92/243 (37%), Gaps = 17/243 (6%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +++R I ++ GS L G+T L TL +E++ +
Sbjct: 318 RIDGRALDEVRPIVSETQILPRTHGSALFTRGETQALVVTTLGTGDDEQIIDALHGNFRS 377
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + R+ G + RAL++V+ + I + +
Sbjct: 378 NFLLHYNFPPYSVGEAGRVGPPGRREIGHGKL----AWRALQAVLPPATDFPYTIRLVSE 433
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ G +++ D ++ + VL+ + + D+
Sbjct: 434 ITESNGSSSMASVCGGSLSMMDAGVPLKAPVAGVAMGLVLEDDGS--------YGILTDI 485
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T++G I +Q + A + + L AK ++
Sbjct: 486 LGDEDHLGDMDFKVAGTENG-ITSLQMDIKVAGITPEIMKKALEQAKAGRMHILGEMAKA 544
Query: 238 ISN 240
I+
Sbjct: 545 ITE 547
Score = 101 bits (250), Expect = 1e-19, Method: Composition-based stats.
Identities = 29/232 (12%), Positives = 67/232 (28%), Gaps = 33/232 (14%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKHGWITAEYGMLPR 68
++L +++ A+G+ + G+T ++ T E + + G +P
Sbjct: 16 LTLETGKIARQADGTVIATLGETSVMAAVTFAKTQKEGQDFFPLTVHYQEKYYAAGKVPG 75
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
R R + R+I R +R + ++
Sbjct: 76 GFFKR------EARPTEKETLTARLIDRPIRPLFVPGFKNEVLVMCTVLSHDLVNDPDIV 129
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGED------ 182
A+ A A G +A G G +++ +
Sbjct: 130 AMIAASAA-------------LTISGAPFMGPIAGCRVGYEDGEYVLNPTVDDMQGLRNN 176
Query: 183 STIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
+D T ++ V+ A +++ + A ++I ++ L
Sbjct: 177 PDQRLDLVVAGTKD-AVMMVESEAYE--LTEEEMLGAVTFAHEQIQPVVDLI 225
>gi|317494714|ref|ZP_07953126.1| ribonuclease PH [Enterobacteriaceae bacterium 9_2_54FAA]
gi|316917316|gb|EFV38663.1| ribonuclease PH [Enterobacteriaceae bacterium 9_2_54FAA]
Length = 238
Score = 161 bits (406), Expect = 1e-37, Method: Composition-based stats.
Identities = 120/240 (50%), Positives = 160/240 (66%), Gaps = 2/240 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR GR Q+R + LTR +K+AEGS LV+FG+T +L AT+EE VP +++ GW+T
Sbjct: 1 MRPEGRTAEQIRPLKLTRHYTKHAEGSVLVEFGETKVLCNATVEEGVPRFLKGQGQGWVT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPRST +R+ REA G+QGGR+ EIQR+I R+LR+ VDL LG I +DCDVIQ
Sbjct: 61 AEYGMLPRSTHSRMAREAAKGKQGGRTMEIQRLIARSLRAAVDLKKLGEFTITLDCDVIQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+ITGA VAL D L + + +KG VAA+S G++ G + DL+Y
Sbjct: 121 ADGGTRTASITGACVALADALNALVAA--GKLKANPMKGMVAAVSVGIVDGQAVCDLEYV 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
EDS + D N VM + G ++EVQG+AE FS + +L LA+ I +I+ QK + N
Sbjct: 179 EDSAAETDMNVVMLEDGRMIEVQGTAEGEPFSHEELLQLLALARGGIDKIIQAQKAALEN 238
>gi|254700800|ref|ZP_05162628.1| polynucleotide phosphorylase/polyadenylase [Brucella suis bv. 5
str. 513]
gi|261751308|ref|ZP_05995017.1| polyribonucleotide nucleotidyltransferase [Brucella suis bv. 5 str.
513]
gi|261741061|gb|EEY28987.1| polyribonucleotide nucleotidyltransferase [Brucella suis bv. 5 str.
513]
Length = 714
Score = 161 bits (406), Expect = 1e-37, Method: Composition-based stats.
Identities = 45/243 (18%), Positives = 87/243 (35%), Gaps = 18/243 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR + +R I + GS L G+T + ATL +E++ + T
Sbjct: 317 RIDGRDLSTVRPIVSEVGILPRTHGSALFTRGETQAIVVATLGTGEDEQMIDALTGTYKE 376
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + + R+ G + RA+ ++ + I +
Sbjct: 377 SFMLHYNFPPYSVGETGRMGSPGRREIGHGKL----AWRAIHPMLPAAEQFPYTIRAVSE 432
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A + G +AL D + + + +G A+ +
Sbjct: 433 ITESNGSSSMATVCGTSLALMDAGVPIVRPVAGIAMGLIKEGERFAVLSD---------I 483
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T+ G I +Q + +++ L AK ++
Sbjct: 484 LGDEDHLGDMDFKVAGTEFG-ITSLQMDIKIDGITEEIMKVALEQAKGGRVHILGEMAKA 542
Query: 238 ISN 240
IS+
Sbjct: 543 ISS 545
Score = 107 bits (266), Expect = 2e-21, Method: Composition-based stats.
Identities = 33/228 (14%), Positives = 71/228 (31%), Gaps = 27/228 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----HGWITAEYGML 66
R ++L +++ A+G+ L +G+T +L T ++ + T G +
Sbjct: 14 RPLTLETGKIARQADGAVLATYGETAVLATVVSAKEPKPGQDFFPLTVNYQEKTYAAGKI 73
Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
P R GR + R+I R +R + Q++I +
Sbjct: 74 PGGYFKR------EGRPSENETLVSRLIDRPIRPLFVDGYKNDTQVVITVLQHDLENNPD 127
Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
++ A A G ++ G + G +++ + E
Sbjct: 128 ILSMVAASAA-------------LTISGVPFMGPISGARVGYIDGEYVLNPNIDEMPESK 174
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
+D T ++ V+ A+ +D + +I
Sbjct: 175 LDLVVAGTSE-AVLMVESEAQE--LPEDVMLGAVMFGHKSFQPVIDAI 219
>gi|62291006|ref|YP_222799.1| polynucleotide phosphorylase/polyadenylase [Brucella abortus bv. 1
str. 9-941]
gi|82700915|ref|YP_415489.1| polynucleotide phosphorylase/polyadenylase [Brucella melitensis
biovar Abortus 2308]
gi|161620077|ref|YP_001593964.1| polynucleotide phosphorylase/polyadenylase [Brucella canis ATCC
23365]
gi|163844182|ref|YP_001628587.1| polynucleotide phosphorylase/polyadenylase [Brucella suis ATCC
23445]
gi|189025218|ref|YP_001935986.1| polynucleotide phosphorylase/polyadenylase [Brucella abortus S19]
gi|237816509|ref|ZP_04595502.1| Polyribonucleotide nucleotidyltransferase [Brucella abortus str.
2308 A]
gi|254690300|ref|ZP_05153554.1| polynucleotide phosphorylase/polyadenylase [Brucella abortus bv. 6
str. 870]
gi|254694788|ref|ZP_05156616.1| polynucleotide phosphorylase/polyadenylase [Brucella abortus bv. 3
str. Tulya]
gi|254705168|ref|ZP_05166996.1| polynucleotide phosphorylase/polyadenylase [Brucella suis bv. 3
str. 686]
gi|254707316|ref|ZP_05169144.1| polynucleotide phosphorylase/polyadenylase [Brucella pinnipedialis
M163/99/10]
gi|254709144|ref|ZP_05170955.1| polynucleotide phosphorylase/polyadenylase [Brucella pinnipedialis
B2/94]
gi|254718207|ref|ZP_05180018.1| polynucleotide phosphorylase/polyadenylase [Brucella sp. 83/13]
gi|254731329|ref|ZP_05189907.1| polynucleotide phosphorylase/polyadenylase [Brucella abortus bv. 4
str. 292]
gi|256030669|ref|ZP_05444283.1| polynucleotide phosphorylase/polyadenylase [Brucella pinnipedialis
M292/94/1]
gi|256158670|ref|ZP_05456553.1| polynucleotide phosphorylase/polyadenylase [Brucella ceti
M490/95/1]
gi|256254074|ref|ZP_05459610.1| polynucleotide phosphorylase/polyadenylase [Brucella ceti B1/94]
gi|256258553|ref|ZP_05464089.1| polynucleotide phosphorylase/polyadenylase [Brucella abortus bv. 9
str. C68]
gi|256370564|ref|YP_003108075.1| polyribonucleotide nucleotidyltransferase [Brucella microti CCM
4915]
gi|260169573|ref|ZP_05756384.1| polynucleotide phosphorylase/polyadenylase [Brucella sp. F5/99]
gi|260546269|ref|ZP_05822009.1| ribosomal protein S1 [Brucella abortus NCTC 8038]
gi|260567364|ref|ZP_05837834.1| ribosomal protein S1 [Brucella suis bv. 4 str. 40]
gi|260755840|ref|ZP_05868188.1| polyribonucleotide nucleotidyltransferase [Brucella abortus bv. 6
str. 870]
gi|260759063|ref|ZP_05871411.1| polyribonucleotide nucleotidyltransferase [Brucella abortus bv. 4
str. 292]
gi|260884865|ref|ZP_05896479.1| polyribonucleotide nucleotidyltransferase [Brucella abortus bv. 9
str. C68]
gi|261215115|ref|ZP_05929396.1| polyribonucleotide nucleotidyltransferase [Brucella abortus bv. 3
str. Tulya]
gi|261221215|ref|ZP_05935496.1| polyribonucleotide nucleotidyltransferase [Brucella ceti B1/94]
gi|261314798|ref|ZP_05953995.1| polyribonucleotide nucleotidyltransferase [Brucella pinnipedialis
M163/99/10]
gi|261316643|ref|ZP_05955840.1| polyribonucleotide nucleotidyltransferase [Brucella pinnipedialis
B2/94]
gi|261755873|ref|ZP_05999582.1| polyribonucleotide nucleotidyltransferase [Brucella suis bv. 3 str.
686]
gi|261759100|ref|ZP_06002809.1| ribosomal protein S1 [Brucella sp. F5/99]
gi|265983164|ref|ZP_06095899.1| polyribonucleotide nucleotidyltransferase [Brucella sp. 83/13]
gi|265987715|ref|ZP_06100272.1| polyribonucleotide nucleotidyltransferase [Brucella pinnipedialis
M292/94/1]
gi|265997176|ref|ZP_06109733.1| polyribonucleotide nucleotidyltransferase [Brucella ceti M490/95/1]
gi|294851394|ref|ZP_06792067.1| polyribonucleotide nucleotidyltransferase [Brucella sp. NVSL
07-0026]
gi|297247393|ref|ZP_06931111.1| polyribonucleotide nucleotidyltransferase [Brucella abortus bv. 5
str. B3196]
gi|306839947|ref|ZP_07472741.1| polynucleotide phosphorylase/polyadenylase [Brucella sp. NF 2653]
gi|306842722|ref|ZP_07475365.1| polynucleotide phosphorylase/polyadenylase [Brucella sp. BO2]
gi|75496015|sp|Q57A96|PNP_BRUAB RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|123727384|sp|Q2YQR3|PNP_BRUA2 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|189037301|sp|A9M9Z8|PNP_BRUC2 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|189037302|sp|B0CK15|PNP_BRUSI RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|226702625|sp|B2S9G0|PNP_BRUA1 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|62197138|gb|AAX75438.1| Pnp, polyribonucleotide nucleotidyltransferase [Brucella abortus
bv. 1 str. 9-941]
gi|82617016|emb|CAJ12125.1| Ribosomal protein S1:3' exoribonuclease:RNA binding S1:KH domain:KH
domain, type 1 [Brucella melitensis biovar Abortus 2308]
gi|161336888|gb|ABX63193.1| Polyribonucleotide nucleotidyltransferase [Brucella canis ATCC
23365]
gi|163674905|gb|ABY39016.1| Polyribonucleotide nucleotidyltransferase [Brucella suis ATCC
23445]
gi|189020790|gb|ACD73512.1| Ribosomal protein S1 [Brucella abortus S19]
gi|237788576|gb|EEP62791.1| Polyribonucleotide nucleotidyltransferase [Brucella abortus str.
2308 A]
gi|256000727|gb|ACU49126.1| polyribonucleotide nucleotidyltransferase [Brucella microti CCM
4915]
gi|260096376|gb|EEW80252.1| ribosomal protein S1 [Brucella abortus NCTC 8038]
gi|260156882|gb|EEW91962.1| ribosomal protein S1 [Brucella suis bv. 4 str. 40]
gi|260669381|gb|EEX56321.1| polyribonucleotide nucleotidyltransferase [Brucella abortus bv. 4
str. 292]
gi|260675948|gb|EEX62769.1| polyribonucleotide nucleotidyltransferase [Brucella abortus bv. 6
str. 870]
gi|260874393|gb|EEX81462.1| polyribonucleotide nucleotidyltransferase [Brucella abortus bv. 9
str. C68]
gi|260916722|gb|EEX83583.1| polyribonucleotide nucleotidyltransferase [Brucella abortus bv. 3
str. Tulya]
gi|260919799|gb|EEX86452.1| polyribonucleotide nucleotidyltransferase [Brucella ceti B1/94]
gi|261295866|gb|EEX99362.1| polyribonucleotide nucleotidyltransferase [Brucella pinnipedialis
B2/94]
gi|261303824|gb|EEY07321.1| polyribonucleotide nucleotidyltransferase [Brucella pinnipedialis
M163/99/10]
gi|261739084|gb|EEY27080.1| ribosomal protein S1 [Brucella sp. F5/99]
gi|261745626|gb|EEY33552.1| polyribonucleotide nucleotidyltransferase [Brucella suis bv. 3 str.
686]
gi|262551644|gb|EEZ07634.1| polyribonucleotide nucleotidyltransferase [Brucella ceti M490/95/1]
gi|264659912|gb|EEZ30173.1| polyribonucleotide nucleotidyltransferase [Brucella pinnipedialis
M292/94/1]
gi|264661756|gb|EEZ32017.1| polyribonucleotide nucleotidyltransferase [Brucella sp. 83/13]
gi|294819983|gb|EFG36982.1| polyribonucleotide nucleotidyltransferase [Brucella sp. NVSL
07-0026]
gi|297174562|gb|EFH33909.1| polyribonucleotide nucleotidyltransferase [Brucella abortus bv. 5
str. B3196]
gi|306287168|gb|EFM58670.1| polynucleotide phosphorylase/polyadenylase [Brucella sp. BO2]
gi|306404911|gb|EFM61196.1| polynucleotide phosphorylase/polyadenylase [Brucella sp. NF 2653]
Length = 714
Score = 161 bits (406), Expect = 1e-37, Method: Composition-based stats.
Identities = 45/243 (18%), Positives = 87/243 (35%), Gaps = 18/243 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR + +R I + GS L G+T + ATL +E++ + T
Sbjct: 317 RIDGRDLSTVRPIVSEVGILPRTHGSALFTRGETQAIVVATLGTGEDEQMIDALTGTYKE 376
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + + R+ G + RA+ ++ + I +
Sbjct: 377 SFMLHYNFPPYSVGETGRMGSPGRREIGHGKL----AWRAIHPMLPAAEQFPYTIRAVSE 432
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A + G +AL D + + + +G A+ +
Sbjct: 433 ITESNGSSSMATVCGTSLALMDAGVPIVRPVAGIAMGLIKEGERFAVLSD---------I 483
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T+ G I +Q + +++ L AK ++
Sbjct: 484 LGDEDHLGDMDFKVAGTEFG-ITSLQMDIKIDGITEEIMKVALEQAKGGRVHILGEMAKA 542
Query: 238 ISN 240
IS+
Sbjct: 543 ISS 545
Score = 107 bits (266), Expect = 2e-21, Method: Composition-based stats.
Identities = 33/228 (14%), Positives = 71/228 (31%), Gaps = 27/228 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----HGWITAEYGML 66
R ++L +++ A+G+ L +G+T +L T ++ + T G +
Sbjct: 14 RPLTLETGKIARQADGAVLATYGETAVLATVVSAKEPKPGQDFFPLTVNYQEKTYAAGKI 73
Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
P R GR + R+I R +R + Q++I +
Sbjct: 74 PGGYFKR------EGRPSENETLVSRLIDRPIRPLFVDGYKNDTQVVITVLQHDLENNPD 127
Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
++ A A G ++ G + G +++ + E
Sbjct: 128 ILSMVAASAA-------------LTISGVPFMGPISGARVGYIDGEYVLNPNIDEMPESK 174
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
+D T ++ V+ A+ +D + +I
Sbjct: 175 LDLVVAGTSE-AVLMVESEAQE--LPEDVMLGAVMFGHKSFQPVIDAI 219
>gi|332285140|ref|YP_004417051.1| polyribonucleotide nucleotidyltransferase [Pusillimonas sp. T7-7]
gi|330429093|gb|AEC20427.1| polyribonucleotide nucleotidyltransferase [Pusillimonas sp. T7-7]
Length = 715
Score = 161 bits (406), Expect = 1e-37, Method: Composition-based stats.
Identities = 51/241 (21%), Positives = 94/241 (39%), Gaps = 18/241 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +R IS++ V A GS L G+T L ATL +E++ I
Sbjct: 320 RIDGRDTRTVRPISVSLGVLPRAHGSALFTRGETQALVVATLGTKQDEQIIDSIMGEHRD 379
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P +TG + + R+ G + RAL S + + I I +
Sbjct: 380 RFMLHYNFPPFATGETGRFGSPKRREIGHGRL----AKRALVSSLPEAQDFQYTIRIVSE 435
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ G +A+ D ++D + + G A+ +
Sbjct: 436 ITESNGSSSMASVCGGSLAMMDAGVPVKDHVAGVAMGLIKDGGKFAVLTD---------I 486
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T +G I +Q + +++ L AK+ ++ K+
Sbjct: 487 LGDEDHLGDMDFKVAGTVTG-ITALQMDIKIQGITREIMQVALAQAKEGRLHILGKMKEA 545
Query: 238 I 238
+
Sbjct: 546 L 546
Score = 96.5 bits (238), Expect = 3e-18, Method: Composition-based stats.
Identities = 38/232 (16%), Positives = 77/232 (33%), Gaps = 27/232 (11%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT----KHGWITAEYGMLPR 68
+ L +++ A G+ LV DT +L T + + T G +P
Sbjct: 16 VVLETGEIARQASGAVLVSIDDTVVLATVVGAKNAKPGQDFFPLTVDYVEKTYAAGRIPG 75
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
R GR + R+I R LR + Q+I+ + + A
Sbjct: 76 GFFKR------EGRPSEKEILTSRLIDRPLRPLFPEGFYNEVQVILHTVSVNPEIDPDIA 129
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+ GA A G + A G + G +++ + ++
Sbjct: 130 AMIGASAA-------------LAISGIPFNGPIGAARVGYIDGQYVLNPTSSQIQASQMN 176
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
T++ ++ V+ A+ S++ + D++ I D+++
Sbjct: 177 LVVAGTEA-AVLMVESEAQN--LSEEVMLGGVMFGHDQMQAAINAIHDLVAE 225
>gi|241761092|ref|ZP_04759181.1| Polyribonucleotide nucleotidyltransferase [Zymomonas mobilis subsp.
mobilis ATCC 10988]
gi|241374711|gb|EER64172.1| Polyribonucleotide nucleotidyltransferase [Zymomonas mobilis subsp.
mobilis ATCC 10988]
Length = 748
Score = 161 bits (406), Expect = 1e-37, Method: Composition-based stats.
Identities = 50/243 (20%), Positives = 87/243 (35%), Gaps = 18/243 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKHG 57
R+ GR +R I GS L G+T L + TL E++ + +
Sbjct: 313 RIDGRDLKTVRPIRSQVGFLPRTHGSALFTRGETQALVSTTLGTADAEQMIDGLTGLHYE 372
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + A R+ G + RAL V+ A I + D
Sbjct: 373 RFMLHYNFPPYSVGEVGRFGAPGRREIGHGKL----AWRALHPVLPSKADFPYTIRVLSD 428
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A + G +AL D + + + +L+ AI ++
Sbjct: 429 ITESNGSSSMATVCGGCLALMDAGVPLTRPVSGIAMGLILEKDGFAILSDIM-------- 480
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T+ G I +Q + A +++ L AK A ++
Sbjct: 481 -GDEDHLGDMDFKVAGTEKG-ITSLQMDIKVAGITEEIMQKALEQAKGGRAHILGEMSKA 538
Query: 238 ISN 240
+
Sbjct: 539 LGE 541
Score = 98.8 bits (244), Expect = 7e-19, Method: Composition-based stats.
Identities = 35/227 (15%), Positives = 71/227 (31%), Gaps = 27/227 (11%)
Query: 13 EISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT----KHGWITAEYGMLP 67
+++L V++ A+G+ + G+T +L T + V + + G +P
Sbjct: 15 KLTLETGQVARQADGAVIATLGETVVLCAVTAAKTVKEGQDFFPLTVHYQEKYSAAGRIP 74
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R + R I R+I R +R + +I +
Sbjct: 75 GGFFKRERGA------TERETLISRLIDRPIRPLFPEGFYNETLVIAQVMSYDGENEPDI 128
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
A+ A AL + A G G I++ + D+
Sbjct: 129 LAMIAASAALALSGVPFLG-------------PIGAARVGYQDGEFILNPTLEQLEKSDL 175
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
D T ++ V+ A ++ ++ A + + +IK
Sbjct: 176 DLVVGATRD-AVMMVESEANE--LPEEVMLNAVSFAHESLQPVIKAI 219
>gi|150398632|ref|YP_001329099.1| polynucleotide phosphorylase/polyadenylase [Sinorhizobium medicae
WSM419]
gi|187611291|sp|A6UF34|PNP_SINMW RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|150030147|gb|ABR62264.1| Polyribonucleotide nucleotidyltransferase [Sinorhizobium medicae
WSM419]
Length = 714
Score = 161 bits (406), Expect = 1e-37, Method: Composition-based stats.
Identities = 42/243 (17%), Positives = 86/243 (35%), Gaps = 18/243 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +R I + GS L G+T + ATL +E+ +
Sbjct: 317 RIDGRDLVTVRPIVAEVGLLPRTHGSALFTRGETQAIVVATLGTGEDEQYVDSLTGMYKE 376
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + + R+ G + RA+ ++ + + + +
Sbjct: 377 NFMLHYNFPPYSVGETGRMGSPGRREIGHGKL----AWRAIHPMLPTAEQFPYTLRVVSE 432
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A + G +AL D + + + + A+ +
Sbjct: 433 ITESNGSSSMATVCGTSLALMDAGVPLAKPVAGIAMGLIKEDDRFAVLSD---------I 483
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T++G + +Q + A +++ L+ AK ++
Sbjct: 484 LGDEDHLGDMDFKVAGTEAG-VTSLQMDIKIAGITEEIMKVALDQAKHGRVHILGEMAKA 542
Query: 238 ISN 240
IS
Sbjct: 543 ISE 545
Score = 106 bits (265), Expect = 2e-21, Method: Composition-based stats.
Identities = 33/227 (14%), Positives = 68/227 (29%), Gaps = 27/227 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----HGWITAEYGML 66
R + L +++ A+G+ L +G+T +L T + + T G +
Sbjct: 14 RPLKLETGKIARQADGAVLATYGETVVLATVVSAKAPKPGQDFFPLTVNYQEKTYAAGKI 73
Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
P R GR + R+I R +R + Q+II +
Sbjct: 74 PGGYFKR------EGRPSENETLVSRLIDRPIRPLFPEGYKNDTQVIITVMQHDLENNPD 127
Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
+ + + G V G + G +++ E
Sbjct: 128 V-------------VAMVAASAALTLSGVPFMGPVGGARVGYINGEYVLNPHLDEMDEST 174
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
+D T ++ V+ A+ S++ + + +I
Sbjct: 175 LDLVVAGTQD-AVLMVESEAKE--LSEEIMLGAVVFGQKGFQPVIDA 218
>gi|29654180|ref|NP_819872.1| polynucleotide phosphorylase/polyadenylase [Coxiella burnetii RSA
493]
gi|154705957|ref|YP_001424300.1| polynucleotide phosphorylase/polyadenylase [Coxiella burnetii
Dugway 5J108-111]
gi|161829803|ref|YP_001596852.1| polynucleotide phosphorylase/polyadenylase [Coxiella burnetii RSA
331]
gi|81629147|sp|Q83D87|PNP_COXBU RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|187610292|sp|A9KFK6|PNP_COXBN RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|187610293|sp|A9ND62|PNP_COXBR RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|29541446|gb|AAO90386.1| hypothetical protein CBU_0852 [Coxiella burnetii RSA 493]
gi|154355243|gb|ABS76705.1| hypothetical protein CBUD_0917 [Coxiella burnetii Dugway 5J108-111]
gi|161761670|gb|ABX77312.1| polyribonucleotide nucleotidyltransferase [Coxiella burnetii RSA
331]
Length = 696
Score = 161 bits (406), Expect = 1e-37, Method: Composition-based stats.
Identities = 42/241 (17%), Positives = 87/241 (36%), Gaps = 18/241 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +R I++ V + GS L G+T L TL + + + +
Sbjct: 318 RIDGRDTKTVRPITVKVGVLPRSHGSALFTRGETQALVVTTLGTERDAQSIDDLDGDRQE 377
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P G R+ G + RA+ VV I + +
Sbjct: 378 EFIFHYNFPPFCVGEVGFMSGPKRREIGHGRL----AKRAVVPVVPTLDKFPYVIRVVSE 433
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+++++G + A++ G+ +AL D + + + + A+ +
Sbjct: 434 ILESNGSSSMASVCGSSLALMDAGVPTKAPVAGIAMGLIKENDKYAVLSD---------I 484
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T +G + +Q + +++ L+ AK+ ++ + V
Sbjct: 485 LGDEDHLGDMDFKVAGTSNG-VTALQMDIKIEGITKEIMEQALDQAKEGRLHILSIMNKV 543
Query: 238 I 238
+
Sbjct: 544 L 544
Score = 94.9 bits (234), Expect = 8e-18, Method: Composition-based stats.
Identities = 41/233 (17%), Positives = 73/233 (31%), Gaps = 27/233 (11%)
Query: 13 EISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGMLP 67
E++ +++ A G+ +V+ GDT LL + EE + + T G +P
Sbjct: 14 EVTFETGEMARQATGAVVVRMGDTVLLVSVVAKKEAEEGRDFFPLTVNYQEKTYAAGKIP 73
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R GR + R+I R LR + Q+I + + T
Sbjct: 74 GGYFKR------EGRPTEKETLTSRLIDRPLRPLFPKGFTNEVQVIATVLSVDSKVPTDI 127
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
AI GA A G + A G G +++ E +
Sbjct: 128 PAILGASAA-------------IGLSGIPFNGSLGAARVGYRGGEYLLNPSLDELKDSAL 174
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
D T ++ V+ A+ + + + I+ + I
Sbjct: 175 DLVVAGTRD-AVLMVESEAQE--LPESVMLGAVLHGHQAMQVAIQAIAEFIQE 224
>gi|297180386|gb|ADI16603.1| polyribonucleotide nucleotidyltransferase (polynucleotide
phosphorylase) [uncultured gamma proteobacterium
HF0010_01E20]
Length = 701
Score = 161 bits (406), Expect = 1e-37, Method: Composition-based stats.
Identities = 46/243 (18%), Positives = 87/243 (35%), Gaps = 18/243 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +R I + V A GS L G+T L ATL + + + +
Sbjct: 314 RIDGRDLRTVRPIEVEVGVLPKAHGSALFTRGETQALVVATLGTLRDAALIDALEGSYKD 373
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G R+ G + R + + + + I + +
Sbjct: 374 TFMLHYNFPPYSVGEAGFMSGPKRREIGHGKL----ARRGVSASLPNAEDFPYTIRVVSE 429
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ G +AL D + + V +G+ A+ +
Sbjct: 430 ITESNGSSSMASVCGTSLALMDAGVPITAPVAGVAMGLVKEGNRYAVLTD---------I 480
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D TD G + +Q + +++ + L A + ++ V
Sbjct: 481 LGDEDHLGDMDFKVAGTDKG-VTALQMDIKIEGITEEIMESALAQAHEARIHILGEMNKV 539
Query: 238 ISN 240
IS
Sbjct: 540 ISE 542
Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats.
Identities = 42/235 (17%), Positives = 77/235 (32%), Gaps = 29/235 (12%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----HGWITAEYGMLPR 68
+ + V+K A GS +V G T +LTT + + T G +P
Sbjct: 15 VVMETNKVAKQASGSVIVTIGSTVVLTTVVGAKNPRPGQDFFPLTVNYQEKTYAAGKIPG 74
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
R GR + R+I R +R + + Q++ D A
Sbjct: 75 GFFRR------EGRPSEKETLTSRLIDRPIRPLFPKGFMNEVQVVCTVLSADKDQDPDIA 128
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+ G A KG + A G + G I++ Y ++
Sbjct: 129 AMIGTSAA-------------LAISGIPFKGPLGAARVGYIDGNYILNPGYESLKESMLN 175
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD--VISNE 241
T+S ++ V+ A+ ++D + + +IK + I+ +
Sbjct: 176 MTVAGTES-AVLMVESEAKE--MTEDEMLGAVLFGHQEMQAIIKAVTELAAIAGK 227
>gi|239833218|ref|ZP_04681547.1| Polyribonucleotide nucleotidyltransferase [Ochrobactrum intermedium
LMG 3301]
gi|239825485|gb|EEQ97053.1| Polyribonucleotide nucleotidyltransferase [Ochrobactrum intermedium
LMG 3301]
Length = 714
Score = 161 bits (406), Expect = 1e-37, Method: Composition-based stats.
Identities = 44/242 (18%), Positives = 86/242 (35%), Gaps = 18/242 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +R I + GS L G+T + ATL +E++ + T
Sbjct: 317 RIDGRDLKTVRPIVSEVGLLPRTHGSALFTRGETQAIVVATLGTGEDEQMIDALTGTYKQ 376
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + + R+ G + RA+ ++ + I +
Sbjct: 377 PFMLHYNFPPYSVGETGRMGSPGRREIGHGKL----AWRAIHPMLPSAEQFPYTIRAVSE 432
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A + G +AL D + + + +G A+ +
Sbjct: 433 ITESNGSSSMATVCGTSLALMDAGVPLARPVAGIAMGLIKEGERFAVLSD---------I 483
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T++G I +Q + +++ L AK ++
Sbjct: 484 LGDEDHLGDMDFKVAGTENG-ITSLQMDIKIDGITEEIMKVALEQAKGGRVHILGEMAKA 542
Query: 238 IS 239
+S
Sbjct: 543 LS 544
Score = 107 bits (266), Expect = 2e-21, Method: Composition-based stats.
Identities = 32/228 (14%), Positives = 72/228 (31%), Gaps = 27/228 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----HGWITAEYGML 66
R ++L +++ A+G+ L +G+T +L T ++ + T G +
Sbjct: 14 RPLTLETGKIARQADGAVLATYGETVVLATVVSAKEPKPGQDFFPLTVNYQEKTYAAGKI 73
Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
P R GR + R+I R +R + Q+++ +
Sbjct: 74 PGGYFKR------EGRPSENETLVSRLIDRPIRPLFVDGYKNDTQVVVTVVQHDLENDPD 127
Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
++ A A G + G + G +++ + E
Sbjct: 128 VLSMVAASAA-------------LTISGVPFMGPIGGARVGYINGEYVLNPNIDEMPESK 174
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
+D T ++ V+ A+ S++ + + +I
Sbjct: 175 LDLVVAGTSE-AVLMVESEAQE--LSEEIMLGAVVFGQKGFQPVIDAI 219
>gi|17988244|ref|NP_540878.1| polynucleotide phosphorylase/polyadenylase [Brucella melitensis bv.
1 str. 16M]
gi|225853594|ref|YP_002733827.1| polynucleotide phosphorylase/polyadenylase [Brucella melitensis
ATCC 23457]
gi|256045772|ref|ZP_05448650.1| polynucleotide phosphorylase/polyadenylase [Brucella melitensis bv.
1 str. Rev.1]
gi|256112492|ref|ZP_05453413.1| polynucleotide phosphorylase/polyadenylase [Brucella melitensis bv.
3 str. Ether]
gi|256264963|ref|ZP_05467495.1| polynucleotide phosphorylase/polyadenylase [Brucella melitensis bv.
2 str. 63/9]
gi|260563068|ref|ZP_05833554.1| polyribonucleotide nucleotidyltransferase [Brucella melitensis bv.
1 str. 16M]
gi|265992189|ref|ZP_06104746.1| polyribonucleotide nucleotidyltransferase [Brucella melitensis bv.
1 str. Rev.1]
gi|265993928|ref|ZP_06106485.1| polyribonucleotide nucleotidyltransferase [Brucella melitensis bv.
3 str. Ether]
gi|81851039|sp|Q8YEB7|PNP_BRUME RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|254782709|sp|C0RG51|PNP_BRUMB RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|17984011|gb|AAL53142.1| polyribonucleotide nucleotidyltransferase [Brucella melitensis bv.
1 str. 16M]
gi|225641959|gb|ACO01873.1| Polyribonucleotide nucleotidyltransferase [Brucella melitensis ATCC
23457]
gi|260153084|gb|EEW88176.1| polyribonucleotide nucleotidyltransferase [Brucella melitensis bv.
1 str. 16M]
gi|262764909|gb|EEZ10830.1| polyribonucleotide nucleotidyltransferase [Brucella melitensis bv.
3 str. Ether]
gi|263003255|gb|EEZ15548.1| polyribonucleotide nucleotidyltransferase [Brucella melitensis bv.
1 str. Rev.1]
gi|263095446|gb|EEZ19047.1| polynucleotide phosphorylase/polyadenylase [Brucella melitensis bv.
2 str. 63/9]
gi|326410167|gb|ADZ67232.1| polynucleotide phosphorylase/polyadenylase [Brucella melitensis
M28]
gi|326539885|gb|ADZ88100.1| polyribonucleotide nucleotidyltransferase [Brucella melitensis
M5-90]
Length = 714
Score = 161 bits (406), Expect = 1e-37, Method: Composition-based stats.
Identities = 45/243 (18%), Positives = 87/243 (35%), Gaps = 18/243 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR + +R I + GS L G+T + ATL +E++ + T
Sbjct: 317 RIDGRDLSTVRPIVSEVGILPRTHGSALFTRGETQAIVVATLGTGEDEQMIDALTGTYKE 376
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + + R+ G + RA+ ++ + I +
Sbjct: 377 SFMLHYNFPPYSVGETGRMGSPGRREIGHGKL----AWRAIHPMLPAAEQFPYTIRAVSE 432
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A + G +AL D + + + +G A+ +
Sbjct: 433 ITESNGSSSMATVCGTSLALMDAGVPIVRPVAGIAMGLIKEGERFAVLSD---------I 483
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T+ G I +Q + +++ L AK ++
Sbjct: 484 LGDEDHLGDMDFKVAGTEFG-ITSLQMDIKIDGITEEIMKVALEQAKGGRVHILGEMAKA 542
Query: 238 ISN 240
IS+
Sbjct: 543 ISS 545
Score = 107 bits (266), Expect = 2e-21, Method: Composition-based stats.
Identities = 33/228 (14%), Positives = 71/228 (31%), Gaps = 27/228 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----HGWITAEYGML 66
R ++L +++ A+G+ L +G+T +L T ++ + T G +
Sbjct: 14 RPLTLETGKIARQADGAVLATYGETAVLATVVSAKEPKPGQDFFPLTVNYQEKTYAAGKI 73
Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
P R GR + R+I R +R + Q++I +
Sbjct: 74 PGGYFKR------EGRPSENETLVSRLIDRPIRPLFVDGYKNDTQVVITVLQHDLENNPD 127
Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
++ A A G ++ G + G +++ + E
Sbjct: 128 ILSMVAASAA-------------LTISGVPFMGPISGARVGYIDGEYVLNPNIDEMPESK 174
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
+D T ++ V+ A+ +D + +I
Sbjct: 175 LDLVVAGTSE-AVLMVESEAQE--LPEDVMLGAVMFGHKSFQPVIDAI 219
>gi|15603741|ref|NP_246815.1| ribonuclease PH [Pasteurella multocida subsp. multocida str. Pm70]
gi|21759412|sp|Q9CJW5|RNPH_PASMU RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|12722306|gb|AAK03960.1| Rph [Pasteurella multocida subsp. multocida str. Pm70]
Length = 238
Score = 160 bits (405), Expect = 1e-37, Method: Composition-based stats.
Identities = 121/240 (50%), Positives = 164/240 (68%), Gaps = 2/240 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR + R NQ R I +TR +K+AEGS LV+FGDT +L TAT+EE VP +++ GW+T
Sbjct: 1 MRPNERANNQPRPIKITRHYTKHAEGSVLVEFGDTKVLCTATVEESVPRFLKGQNQGWVT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPRST +R++REA G+QGGR+ EIQR+I R+LR++VDL ALG R I +DCDVIQ
Sbjct: 61 AEYGMLPRSTHSRMQREAAKGKQGGRTLEIQRLIARSLRAMVDLEALGERSITLDCDVIQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+ITGA VAL D + + + +K VAAIS G++ G P+ DL+Y
Sbjct: 121 ADGGTRTASITGACVALCDAIHGLVEN--GTLKVNPIKSLVAAISVGIVEGVPVCDLEYV 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
EDS + D N VM + G ++EVQG+AE FS + +L LAK+ + +Q+ ++
Sbjct: 179 EDSAAETDMNVVMMEDGRMIEVQGTAEGEPFSHEELLTLLALAKEGCQLIFDVQRQALAK 238
>gi|256060129|ref|ZP_05450311.1| polynucleotide phosphorylase/polyadenylase [Brucella neotomae 5K33]
gi|261324106|ref|ZP_05963303.1| polyribonucleotide nucleotidyltransferase [Brucella neotomae 5K33]
gi|261300086|gb|EEY03583.1| polyribonucleotide nucleotidyltransferase [Brucella neotomae 5K33]
Length = 714
Score = 160 bits (405), Expect = 1e-37, Method: Composition-based stats.
Identities = 45/243 (18%), Positives = 87/243 (35%), Gaps = 18/243 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR + +R I + GS L G+T + ATL +E++ + T
Sbjct: 317 RIDGRDLSTVRPIVSEVGILPRTHGSALFTRGETQAIVVATLGTGEDEQMIDALTGTYKE 376
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + + R+ G + RA+ ++ + I +
Sbjct: 377 SFMLHYNFPPYSVGETGRMGSPGRREIGHGKL----AWRAIYPMLPAAEQFPYTIRAVSE 432
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A + G +AL D + + + +G A+ +
Sbjct: 433 ITESNGSSSMATVCGTSLALMDAGVPIVRPVAGIAMGLIKEGERFAVLSD---------I 483
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T+ G I +Q + +++ L AK ++
Sbjct: 484 LGDEDHLGDMDFKVAGTEFG-ITSLQMDIKIDGITEEIMKVALEQAKGGRVHILGEMAKA 542
Query: 238 ISN 240
IS+
Sbjct: 543 ISS 545
Score = 107 bits (267), Expect = 1e-21, Method: Composition-based stats.
Identities = 33/228 (14%), Positives = 71/228 (31%), Gaps = 27/228 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----HGWITAEYGML 66
R ++L +++ A+G+ L +G+T +L T ++ + T G +
Sbjct: 14 RPLTLETGKIARQADGAVLATYGETAVLATVVSAKEPKPGQDFFPLTVNYQEKTYAAGKI 73
Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
P R GR + R+I R +R + Q++I +
Sbjct: 74 PGGYFKR------EGRPSENETLVSRLIDRPIRPLFVDGYKNDTQVVITVLQHDLENNPD 127
Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
++ A A G ++ G + G +++ + E
Sbjct: 128 ILSMVAASAA-------------LTISGVPFMGPISGARVGYIDGEYVLNPNIDEMPESK 174
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
+D T ++ V+ A+ +D + +I
Sbjct: 175 LDLVVAGTSE-AVLMVESEAQE--LPEDVMLGAVMFGHKSFQPVIDAI 219
>gi|119493583|ref|ZP_01624247.1| ribonuclease PH [Lyngbya sp. PCC 8106]
gi|119452573|gb|EAW33756.1| ribonuclease PH [Lyngbya sp. PCC 8106]
Length = 241
Score = 160 bits (405), Expect = 1e-37, Method: Composition-based stats.
Identities = 93/240 (38%), Positives = 146/240 (60%), Gaps = 4/240 (1%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
RL R+ +Q+R + ++Y+ S L K G+T ++ T++ VP +++++ GW+TA
Sbjct: 5 RLDDRKPDQLRPVHFELNYTRYSSASVLTKCGNTQVICNVTIQPGVPNFLKDSGQGWLTA 64
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
EY MLP +T R R + GR+QEIQR+IGR+LR+ VDL LG + +IID DV+QA
Sbjct: 65 EYRMLPGATQQRHSR--ELMKLSGRTQEIQRLIGRSLRAAVDLKVLGEKTVIIDADVLQA 122
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
D GTRTA+ITG +VAL + + D + + +AAIS G+L G P +DL+Y E
Sbjct: 123 DAGTRTASITGGFVALANAFNKLVDKGELEKS--PISHQIAAISVGLLEGEPYLDLNYEE 180
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
D DVD N VM D ++E+QG+AE +F++ +++ A+ I L++ Q + ++
Sbjct: 181 DVAADVDCNIVMNDQLGMIELQGTAEAESFTRQQLNKIMDYAEIGIKQLLEAQNQALKSD 240
>gi|23503016|ref|NP_699143.1| polynucleotide phosphorylase/polyadenylase [Brucella suis 1330]
gi|81751805|sp|Q8FXS9|PNP_BRUSU RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|23349057|gb|AAN31058.1| polyribonucleotide nucleotidyltransferase [Brucella suis 1330]
Length = 714
Score = 160 bits (405), Expect = 1e-37, Method: Composition-based stats.
Identities = 45/243 (18%), Positives = 87/243 (35%), Gaps = 18/243 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR + +R I + GS L G+T + ATL +E++ + T
Sbjct: 317 RIDGRDLSTVRPIVSEVGILPRTHGSALFTRGETQAIVVATLGTGEDEQMIDALTGTYKE 376
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + + R+ G + RA+ ++ + I +
Sbjct: 377 SFMLHYNFPPYSVGETGRMGSPGRREIGHGKL----AWRAIHPMLPAAEQFPYTIRAVSE 432
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A + G +AL D + + + +G A+ +
Sbjct: 433 ITESNGSSSMATVCGTSLALMDAGVPIVRPVAGIAMGLIKEGERFAVLSD---------I 483
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T+ G I +Q + +++ L AK ++
Sbjct: 484 LGDEDYLGDMDFKVAGTEFG-ITSLQMDIKIDGITEEIMKVALEQAKGGRVHILGEMAKA 542
Query: 238 ISN 240
IS+
Sbjct: 543 ISS 545
Score = 107 bits (267), Expect = 1e-21, Method: Composition-based stats.
Identities = 33/228 (14%), Positives = 71/228 (31%), Gaps = 27/228 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----HGWITAEYGML 66
R ++L +++ A+G+ L +G+T +L T ++ + T G +
Sbjct: 14 RPLTLETGKIARQADGAVLATYGETAVLATVVSAKEPKPGQDFFPLTVNYQEKTYAAGKI 73
Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
P R GR + R+I R +R + Q++I +
Sbjct: 74 PGGYFKR------EGRPSENETLVSRLIDRPIRPLFVDGYKNDTQVVITVLQHDLENNPD 127
Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
++ A A G ++ G + G +++ + E
Sbjct: 128 ILSMVAASAA-------------LTISGVPFMGPISGARVGYIDGEYVLNPNIDEMPESK 174
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
+D T ++ V+ A+ +D + +I
Sbjct: 175 LDLVVAGTSE-AVLMVESEAQE--LPEDVMLGAVMFGHKSFQPVIDAI 219
>gi|209966184|ref|YP_002299099.1| polynucleotide phosphorylase/polyadenylase [Rhodospirillum centenum
SW]
gi|226702682|sp|B6IVG3|PNP_RHOCS RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|209959650|gb|ACJ00287.1| polyribonucleotide nucleotidyltransferase, putative [Rhodospirillum
centenum SW]
Length = 707
Score = 160 bits (405), Expect = 1e-37, Method: Composition-based stats.
Identities = 44/242 (18%), Positives = 89/242 (36%), Gaps = 18/242 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +R I V A GS L G+T L ATL +E++ +
Sbjct: 314 RIDGRTTVDIRPIVSQVGVLPRAHGSALFTRGETQALVVATLGTNQDEQIVDALEGEYRE 373
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + + R+ G + RA+R ++ I + +
Sbjct: 374 SFMLHYNFPPYSVGEAGRMGSPGRREIGHGKL----AWRAVRPLLPTKETFPYTIRVVSE 429
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A + G+ +++ D + + + +G A+ +
Sbjct: 430 ITESNGSSSMATVCGSSLSMMDAGVPLPRPVAGIAMGLIKEGEKFAVLSD---------I 480
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T+ G + +Q + + +++ L AKD ++
Sbjct: 481 LGDEDHLGDMDFKVAGTEKG-VTALQMDIKITSITEEIMKIALAQAKDGRVHILSEMNKA 539
Query: 238 IS 239
++
Sbjct: 540 LN 541
Score = 106 bits (265), Expect = 2e-21, Method: Composition-based stats.
Identities = 38/228 (16%), Positives = 71/228 (31%), Gaps = 27/228 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEE----KVPMWIRNTKHGWITAEYGML 66
R++ L V++ A+G+ +GDT +L TA + V + + G +
Sbjct: 14 RKLVLETGKVARQADGAVWASYGDTVVLATAVAAKAPKPGVDFFPLTVNYQEKAFAAGKI 73
Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
P R GR + R+I R +R + Q+I+ +
Sbjct: 74 PGGFFKR------EGRPTEKEVLTSRLIDRPIRPLFADGYRNETQVIVTVLSHDLENDPD 127
Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
A+ A G + A G G +++ + D
Sbjct: 128 IVAMVATSAA-------------LTISGIPFLGPIGAARVGYKDGQFVLNPTLEQVEASD 174
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
+D T G ++ V+ A+ +D + +I L
Sbjct: 175 LDLVVAGTTEG-VLMVESEAKE--LPEDVMLGAVMFGHREFQPVIDLI 219
>gi|242237612|ref|YP_002985793.1| ribonuclease PH [Dickeya dadantii Ech703]
gi|242129669|gb|ACS83971.1| ribonuclease PH [Dickeya dadantii Ech703]
Length = 238
Score = 160 bits (405), Expect = 1e-37, Method: Composition-based stats.
Identities = 122/240 (50%), Positives = 164/240 (68%), Gaps = 2/240 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR +GR Q R I+LTR +K+AEG+ LV+FGDT +L TAT+EE VP +++ GWIT
Sbjct: 1 MRPTGRSAQQTRPITLTRHYTKHAEGAVLVEFGDTKVLCTATVEEGVPRFLKGQGQGWIT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPR+T +R REA G+QGGR+ EIQR+I R+LR+ VDL+ LG I +DCDV+Q
Sbjct: 61 AEYGMLPRATHSRNAREAARGKQGGRTLEIQRLIARSLRAAVDLAKLGEYTITLDCDVLQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+ITGA VAL D + + +KG VAA+S G++ G + DL+Y
Sbjct: 121 ADGGTRTASITGACVALADAIAGLVAS--GKLAKNPMKGMVAAVSVGIVNGEAVCDLEYV 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
EDS + D N VMT+ G ++EVQG+AE FS + +L LA+ I D+I+ QK ++N
Sbjct: 179 EDSAAETDMNVVMTEDGRMIEVQGTAEGEPFSHEQLLELLALARGGIEDIIRAQKAALAN 238
>gi|148559480|ref|YP_001259963.1| polynucleotide phosphorylase/polyadenylase [Brucella ovis ATCC
25840]
gi|187470942|sp|A5VTB6|PNP_BRUO2 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|148370737|gb|ABQ60716.1| polyribonucleotide nucleotidyltransferase [Brucella ovis ATCC
25840]
Length = 714
Score = 160 bits (405), Expect = 1e-37, Method: Composition-based stats.
Identities = 45/243 (18%), Positives = 87/243 (35%), Gaps = 18/243 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR + +R I + GS L G+T + ATL +E++ + T
Sbjct: 317 RIDGRDLSTVRPIVSEVGILPRTHGSALFTRGETQAIVVATLGTGEDEQMIDALTGTYKE 376
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + + R+ G + RA+ ++ + I +
Sbjct: 377 SFMLHYNFPPYSVGETGRMGSPGRREIGHGKL----AWRAIHPMLPAAEQFPYTIRAVSE 432
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A + G +AL D + + + +G A+ +
Sbjct: 433 ITESNGSSSMATVCGTSLALMDAGVPIVRPVAGIAMGLIKEGERFAVLSD---------I 483
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T+ G I +Q + +++ L AK ++
Sbjct: 484 LGDEDHLGDMDFKVAGTEFG-ITSLQMDIKIDGITEEIMKVALEQAKGGRVHILGEMAKA 542
Query: 238 ISN 240
IS+
Sbjct: 543 ISS 545
Score = 108 bits (269), Expect = 7e-22, Method: Composition-based stats.
Identities = 32/228 (14%), Positives = 71/228 (31%), Gaps = 27/228 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----HGWITAEYGML 66
R +++ +++ A+G+ L +G+T +L T ++ + T G +
Sbjct: 14 RPLTIETGKIARQADGAVLATYGETAVLATVVSAKEPKPGQDFFPLTVNYQEKTYAAGKI 73
Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
P R GR + R+I R +R + Q++I +
Sbjct: 74 PGGYFKR------EGRPSENETLVSRLIDRPIRPLFVDGYKNDTQVVITVLQHDLENNPD 127
Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
++ A A G ++ G + G +++ + E
Sbjct: 128 ILSMVAASAA-------------LTISGVPFMGPISGARVGYIDGEYVLNPNIDEMPESK 174
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
+D T ++ V+ A+ +D + +I
Sbjct: 175 LDLVVAGTSE-AVLMVESEAQE--LPEDVMLGAVMFGHKSFQPVIDAI 219
>gi|257467022|ref|ZP_05631333.1| polynucleotide phosphorylase/polyadenylase [Fusobacterium
gonidiaformans ATCC 25563]
gi|315918159|ref|ZP_07914399.1| polyribonucleotide nucleotidyltransferase [Fusobacterium
gonidiaformans ATCC 25563]
gi|313692034|gb|EFS28869.1| polyribonucleotide nucleotidyltransferase [Fusobacterium
gonidiaformans ATCC 25563]
Length = 707
Score = 160 bits (405), Expect = 1e-37, Method: Composition-based stats.
Identities = 50/243 (20%), Positives = 92/243 (37%), Gaps = 18/243 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR ++R + V GS L G+T L TATL +E++ + +
Sbjct: 324 RVDGRTTTEIRPLDAQINVLPIPHGSALFTRGETQSLATATLGTKDDEQLVDNLEKEYYK 383
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + A R+ G RALR V+ I + D
Sbjct: 384 KFYLHYNFPPYSVGETGRMGAPGRRELGHGSL----AERALRYVIPTEEEFPYTIRVVSD 439
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A+I G +AL +++ + + +G + ++
Sbjct: 440 ITESNGSSSQASICGGSLALMSAGVPIKEHVAGIAMGLIKEGEEFTVLTDIM-------- 491
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T SG I +Q + +++ L+ A ++++
Sbjct: 492 -GLEDHLGDMDFKVAGTKSG-ITALQMDIKITGITEEIMRIALSQAHVARQQILEVMNAA 549
Query: 238 ISN 240
IS+
Sbjct: 550 ISS 552
Score = 104 bits (259), Expect = 1e-20, Method: Composition-based stats.
Identities = 34/233 (14%), Positives = 77/233 (33%), Gaps = 27/233 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKV----PMWIRNTKHGWITAEYGML 66
R + ++ +++ + G+ ++++GDT LL+T ++ + + G
Sbjct: 14 RTLKVSTGKIARQSCGAVMIQYGDTVLLSTVNRSKEPRKGADFFPLTVDYIEKFYAAGKF 73
Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
P R R + + R+I R +R + I+
Sbjct: 74 PGGFNKR------ESRPSTDATLVARLIDRPIRPMFPEGFTYDVHIVNTVFSFDEQNTPD 127
Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
I G+ +A G VA ++ G + G I++ +
Sbjct: 128 YLGIIGSSLA-------------LSISDIPFLGPVAGVTVGYIDGEFILNPSPEQLEQSL 174
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
+D + T + V+ A+ ++ + A D I + Q++ +
Sbjct: 175 LDLSVAGTKD-AVNMVEAGAKE--LDEETMLKAILFAHDNIKKICAFQEEFVK 224
>gi|258511422|ref|YP_003184856.1| polyribonucleotide nucleotidyltransferase [Alicyclobacillus
acidocaldarius subsp. acidocaldarius DSM 446]
gi|257478148|gb|ACV58467.1| polyribonucleotide nucleotidyltransferase [Alicyclobacillus
acidocaldarius subsp. acidocaldarius DSM 446]
Length = 735
Score = 160 bits (405), Expect = 1e-37, Method: Composition-based stats.
Identities = 45/240 (18%), Positives = 84/240 (35%), Gaps = 10/240 (4%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+R GR+ +++R IS + GS L G T L+ TL + + +
Sbjct: 310 IRPDGRRLDEIRPISCEVGLLPRTHGSALFTRGQTQALSVCTLGSMGDEQLLDGLELEKS 369
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
Y V R + RAL V+ I + ++++
Sbjct: 370 NRYMHHYNFPPFSVGEAKPLRAPSRRDIGHGALGERALDPVIPSPEEFPYAIRVVSEILE 429
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
++G T A+I G+ +AL D ++ + V +G AI +
Sbjct: 430 SNGSTSQASICGSTMALMDAGVPIKAPVAGIAMGLVKEGDQVAILSD---------IQGI 480
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
ED D+D T+ G + +Q + + + L A++ ++ + IS
Sbjct: 481 EDHLGDMDFKVAGTERG-VTALQMDIKISGIDRSILERALKQAREGRMYILSKMMEAISE 539
Score = 100 bits (249), Expect = 1e-19, Method: Composition-based stats.
Identities = 35/235 (14%), Positives = 75/235 (31%), Gaps = 27/235 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATL---EEKVPMWIRNTKHGWITAEYGMLP 67
R L +++ A + V++G+T +L T T +++ + + G +P
Sbjct: 12 RRFVLETGKLARQATAAVHVQYGETVVLATVTASKEPKELDFFPLTVNYEERLYAVGKIP 71
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R GR + R+I R +R + QI+ + D
Sbjct: 72 GGFIKR------EGRPSEHAILASRLIDRPIRPLFPEGFRNDVQIVDLVLSVDQDCAPEI 125
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
AA+ G ++ G + + G++ G +++ + D+
Sbjct: 126 AAMIGT-------------SASLTISDIPFNGPIGGVIVGLVDGQFVINPTVEQSEKSDL 172
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNEV 242
T IV V+ A + ++ + I + + +V
Sbjct: 173 HLVVAGTKD-AIVMVEAGANQVP--EEIVLEAILYGHQVIQTICDEIN-AFAQKV 223
>gi|167644014|ref|YP_001681677.1| polynucleotide phosphorylase/polyadenylase [Caulobacter sp. K31]
gi|189037303|sp|B0T175|PNP_CAUSK RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|167346444|gb|ABZ69179.1| Polyribonucleotide nucleotidyltransferase [Caulobacter sp. K31]
Length = 716
Score = 160 bits (405), Expect = 1e-37, Method: Composition-based stats.
Identities = 47/249 (18%), Positives = 90/249 (36%), Gaps = 21/249 (8%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
+R+ GR + +R I + GS L G+T + ATL +E+ + T
Sbjct: 316 IRIDGRTVDTVRPILGEVGILPRTHGSALFTRGETQAIVVATLGTGDDEQFIDALEGTYK 375
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P S G + + R+ G + RALR ++ I +
Sbjct: 376 EAFLLHYNFPPFSVGETGRMGSPGRREIGHGKL----AWRALRPMLPAKEDFPYTIRLVS 431
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
++ +++G + A + GA +A+ D + + + +L+ A+
Sbjct: 432 EITESNGSSSMATVCGASLAMMDAGVPLIRPVSGIAMGLILEKDGFAVLSD--------- 482
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T G + +Q + A +++ L AK ++
Sbjct: 483 ILGDEDHLGDMDFKVAGTSQG-LTSLQMDIKIAGITEEIMKQALAQAKGGREHILGEMNK 541
Query: 237 VI---SNEV 242
+ EV
Sbjct: 542 AMDAPREEV 550
Score = 107 bits (266), Expect = 2e-21, Method: Composition-based stats.
Identities = 35/233 (15%), Positives = 73/233 (31%), Gaps = 28/233 (12%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----HGWITAEYGMLPR 68
+ L +++ A+G+ L G+T +L TA +K + T G +P
Sbjct: 16 LVLETGRIARQADGAVLATMGETVVLATAVFAKKAKPGQDFFPLTVNYIEKTYAAGKIPG 75
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
R GR + + R+I R +R + Q++ +
Sbjct: 76 GFFKR------EGRPSEKETLVSRLIDRPIRPLFVKGFKNEVQVVCTVLQHDLENDPDIV 129
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+ A A G + G + I++ E +D
Sbjct: 130 AMCAASAA-------------LVISGAPFMGPIGGCRVGYVNDEYILNPTLDELKESKMD 176
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
T ++ V+ +E S++ ++ A + +I + ++
Sbjct: 177 LVVAGTAD-AVMMVE--SEIQELSEEIVLGGVSFAHKSMQAVINGIIE-LAEH 225
>gi|83595114|ref|YP_428866.1| polynucleotide phosphorylase/polyadenylase [Rhodospirillum rubrum
ATCC 11170]
gi|123766875|sp|Q2RMR6|PNP_RHORT RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|83578028|gb|ABC24579.1| 3' exoribonuclease [Rhodospirillum rubrum ATCC 11170]
Length = 708
Score = 160 bits (405), Expect = 1e-37, Method: Composition-based stats.
Identities = 45/244 (18%), Positives = 91/244 (37%), Gaps = 18/244 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
+R+ GR +R I + + A GS L G+T L T TL +E++ +
Sbjct: 314 LRIDGRDTKTVRPIEIYPGILPRAHGSALFTRGETQALVTTTLGTGQDEQIIDALEGEYR 373
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P S G + + R+ G + RA+ ++ + +
Sbjct: 374 ENFMLHYNFPPYSVGEAGRMGSPGRREIGHGKL----AWRAIHPMMPAKDAFPYTVRVVS 429
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
++ +++G + A + G +AL D +++ + + + A+
Sbjct: 430 EITESNGSSSMATVCGTSLALMDAGVPLKNAVAGIAMGLIKEDERFAVLSD--------- 480
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T +G I +Q + + +++ LN AKD ++
Sbjct: 481 ILGDEDHLGDMDFKVAGTANG-ITSLQMDIKITSITKEIMNVALNQAKDGRIHILGEMTK 539
Query: 237 VISN 240
+ N
Sbjct: 540 ALGN 543
Score = 113 bits (282), Expect = 2e-23, Method: Composition-based stats.
Identities = 38/234 (16%), Positives = 78/234 (33%), Gaps = 27/234 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEE---KVPMWIRNTKHGWITAEYGMLP 67
R++ L +++ A+G+ + GDT +L TA + K + + T G +P
Sbjct: 16 RKLVLETGRIARQADGAVMASLGDTTVLCTAVGAKTKSKFDFFPLTVNYQEKTFAAGKIP 75
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R GR + + R+I R +R + Q++ +
Sbjct: 76 GGFFKR------EGRPSEKETLVSRLIDRPIRPLFVHGYKNETQLVCTVLCHDLENNPDI 129
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
AI GA A G + A G++ G +++ + + +
Sbjct: 130 VAIVGASAA-------------LTLSGLPFLGPIGAARVGLIDGAFVLNPTRDQMADSVL 176
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
D T G ++ V+ A S+ + + +I ++ +
Sbjct: 177 DLVVAGTREG-VLMVESEAHE--LSEQQMLDAVMFGHEGYQPVIDAI-IALAEQ 226
>gi|31792536|ref|NP_855029.1| ribonuclease PH [Mycobacterium bovis AF2122/97]
gi|59798839|sp|Q7U076|RNPH_MYCBO RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|31618125|emb|CAD94236.1| PROBABLE RIBONUCLEASE RPHA (RNase PH) (tRNA nucleotidyltransferase)
[Mycobacterium bovis AF2122/97]
Length = 259
Score = 160 bits (405), Expect = 1e-37, Method: Composition-based stats.
Identities = 109/238 (45%), Positives = 154/238 (64%), Gaps = 1/238 (0%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R GR ++++R + +TR ++ GS L++FG T +L TA++ E VP W + T GW+TA
Sbjct: 4 REDGRLDHELRPVIITRGFTENPAGSVLIEFGHTKVLCTASVTEGVPRWRKATGLGWLTA 63
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
EY MLP +T +R RE+V GR GR+QEI R+I R+LR+ +DL+ALG I IDCDV+QA
Sbjct: 64 EYAMLPSATHSRSDRESVRGRLSGRTQEISRLISRSLRACIDLAALGENTIAIDCDVLQA 123
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
DGGTRTAAITGA+VAL D + K + L +AA+S G++ G VDL Y E
Sbjct: 124 DGGTRTAAITGAYVALADA-VTYLSAAGKLSDPRPLSCAIAAVSVGVVDGRIRVDLPYEE 182
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
DS +VD N V TD+G +VE+QG+ E ATF++ +L++A L Q+D ++
Sbjct: 183 DSRAEVDMNVVATDTGTLVEIQGTGEGATFARSTLDKLLDMALGACDTLFAAQRDALA 240
>gi|292669539|ref|ZP_06602965.1| tRNA nucleotidyltransferase [Selenomonas noxia ATCC 43541]
gi|292648748|gb|EFF66720.1| tRNA nucleotidyltransferase [Selenomonas noxia ATCC 43541]
Length = 248
Score = 160 bits (405), Expect = 1e-37, Method: Composition-based stats.
Identities = 110/242 (45%), Positives = 156/242 (64%), Gaps = 5/242 (2%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R R+ +Q+R + + R +Y GS LV+ G T ++ AT+EE+VP +++ + GW+TA
Sbjct: 3 RRDLRRTDQLRPVHIERGYQRYPAGSALVETGHTRVVCAATVEERVPFFLKGSGTGWVTA 62
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
EY MLP + R REAV GRQ GR+QEIQR+IGRALR+VVD+ LG R I IDCDV+QA
Sbjct: 63 EYAMLPGAGAERTAREAVRGRQSGRTQEIQRLIGRALRAVVDMKVLGERTIHIDCDVLQA 122
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG-YPIVDLDYG 180
DGGTRTA++TGA+VAL + F ++ +VAA+S G+ P++D+ Y
Sbjct: 123 DGGTRTASVTGAFVALVEACATFYTKHGIF----PVRDYVAAVSVGIDTEGTPLLDICYE 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
EDS+ VD N VMT +G VEVQG+ E +FS+ A+L+L + I +LI+ QK +
Sbjct: 179 EDSSAMVDMNLVMTGAGEFVEVQGTGEGRSFSRAEMNALLDLGERGIRELIEHQKTALGE 238
Query: 241 EV 242
+
Sbjct: 239 TL 240
>gi|51473686|ref|YP_067443.1| polynucleotide phosphorylase/polyadenylase [Rickettsia typhi str.
Wilmington]
gi|81390070|sp|Q68WN1|PNP_RICTY RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|51459998|gb|AAU03961.1| Polynucleotide phosphorylase [Rickettsia typhi str. Wilmington]
Length = 745
Score = 160 bits (405), Expect = 1e-37, Method: Composition-based stats.
Identities = 45/244 (18%), Positives = 88/244 (36%), Gaps = 18/244 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56
+R+ GR +R+I+ + A GS L G+T L + T L+E++ +
Sbjct: 315 IRIDGRSTTDIRQIACEVGLLPSAHGSALFTRGETQSLVSTTFGTSLDEQIVDSLEGEYK 374
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P S + +A S R+ G + RA+ ++ I +
Sbjct: 375 ERFMLNYIFPPYSVNEAMPMKAPSRREVGHGKL----AWRAINPILPNKVQFPYSIRVVA 430
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+ +++G + A + G+ +AL ++ + + +G AI
Sbjct: 431 ETTESNGSSSMATVCGSSLALMYAGVPIKAPVAGIAMGLIKEGDKFAILSD--------- 481
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T G I +Q + + L A+ +++
Sbjct: 482 IIGDEDYFGDMDFKVAGTSKG-ITALQMDIKISGIDFKIIQVALEQARHGRLHILEQMNK 540
Query: 237 VISN 240
+IS
Sbjct: 541 IISK 544
Score = 89.1 bits (219), Expect = 5e-16, Method: Composition-based stats.
Identities = 38/228 (16%), Positives = 78/228 (34%), Gaps = 27/228 (11%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPM----WIRNTKHGWITAEYGMLPR 68
+ ++ +++ A+ + VK G++ LL T + KV + + + G +P
Sbjct: 16 LEISTGKIARQADAAVTVKMGNSILLCTCVVANKVKDGIGFFPLTINYREMAYSAGKIPG 75
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
R G+ + + R+I R +R + + + I +
Sbjct: 76 GFLKR------EGKASDKEILVSRLIDRPIRPLFHQAFIHETHITCSVLSYDPETPVDIL 129
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
AI GA A VAA G++ G +++ T +D
Sbjct: 130 AIIGASAA-------------LSISPAPYLEIVAASKVGLINGEFVLNPTLELLKTSQLD 176
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
T ++ V+ +E S++ + + +IKL K+
Sbjct: 177 LVVAGTKD-SVMMVE--SEAHLLSEEKMLEAIKFGFENFQTVIKLIKE 221
>gi|15608480|ref|NP_215856.1| ribonuclease PH [Mycobacterium tuberculosis H37Rv]
gi|15840795|ref|NP_335832.1| ribonuclease PH [Mycobacterium tuberculosis CDC1551]
gi|121637271|ref|YP_977494.1| ribonuclease PH [Mycobacterium bovis BCG str. Pasteur 1173P2]
gi|148661129|ref|YP_001282652.1| ribonuclease PH [Mycobacterium tuberculosis H37Ra]
gi|148822561|ref|YP_001287315.1| ribonuclease PH [Mycobacterium tuberculosis F11]
gi|167969088|ref|ZP_02551365.1| ribonuclease PH [Mycobacterium tuberculosis H37Ra]
gi|215403187|ref|ZP_03415368.1| ribonuclease PH [Mycobacterium tuberculosis 02_1987]
gi|215410985|ref|ZP_03419793.1| ribonuclease PH [Mycobacterium tuberculosis 94_M4241A]
gi|215426669|ref|ZP_03424588.1| ribonuclease PH [Mycobacterium tuberculosis T92]
gi|215430226|ref|ZP_03428145.1| ribonuclease PH [Mycobacterium tuberculosis EAS054]
gi|215445522|ref|ZP_03432274.1| ribonuclease PH [Mycobacterium tuberculosis T85]
gi|218753051|ref|ZP_03531847.1| ribonuclease PH [Mycobacterium tuberculosis GM 1503]
gi|219557243|ref|ZP_03536319.1| ribonuclease PH [Mycobacterium tuberculosis T17]
gi|224989745|ref|YP_002644432.1| ribonuclease [Mycobacterium bovis BCG str. Tokyo 172]
gi|253799612|ref|YP_003032613.1| ribonuclease rphA [Mycobacterium tuberculosis KZN 1435]
gi|254364236|ref|ZP_04980282.1| ribonuclease rphA (RNase ph) [Mycobacterium tuberculosis str.
Haarlem]
gi|254550352|ref|ZP_05140799.1| ribonuclease PH [Mycobacterium tuberculosis '98-R604 INH-RIF-EM']
gi|260186279|ref|ZP_05763753.1| ribonuclease PH [Mycobacterium tuberculosis CPHL_A]
gi|260200397|ref|ZP_05767888.1| ribonuclease PH [Mycobacterium tuberculosis T46]
gi|289442782|ref|ZP_06432526.1| ribonuclease PH [Mycobacterium tuberculosis T46]
gi|289446935|ref|ZP_06436679.1| ribonuclease rphA [Mycobacterium tuberculosis CPHL_A]
gi|289554868|ref|ZP_06444078.1| ribonuclease rphA [Mycobacterium tuberculosis KZN 605]
gi|289569353|ref|ZP_06449580.1| ribonuclease rphA [Mycobacterium tuberculosis T17]
gi|289745092|ref|ZP_06504470.1| ribonuclease PH [Mycobacterium tuberculosis 02_1987]
gi|289749896|ref|ZP_06509274.1| ribonuclease rphA [Mycobacterium tuberculosis T92]
gi|289753422|ref|ZP_06512800.1| ribonuclease rphA [Mycobacterium tuberculosis EAS054]
gi|289757445|ref|ZP_06516823.1| ribonuclease rphA [Mycobacterium tuberculosis T85]
gi|289761501|ref|ZP_06520879.1| ribonuclease rphA (RNase ph) [Mycobacterium tuberculosis GM 1503]
gi|294994898|ref|ZP_06800589.1| ribonuclease PH [Mycobacterium tuberculosis 210]
gi|297633893|ref|ZP_06951673.1| ribonuclease PH [Mycobacterium tuberculosis KZN 4207]
gi|297730881|ref|ZP_06959999.1| ribonuclease PH [Mycobacterium tuberculosis KZN R506]
gi|298524847|ref|ZP_07012256.1| ribonuclease PH [Mycobacterium tuberculosis 94_M4241A]
gi|306775519|ref|ZP_07413856.1| ribonuclease rphA [Mycobacterium tuberculosis SUMu001]
gi|306780669|ref|ZP_07419006.1| ribonuclease rphA [Mycobacterium tuberculosis SUMu002]
gi|306784070|ref|ZP_07422392.1| ribonuclease rphA [Mycobacterium tuberculosis SUMu003]
gi|306788431|ref|ZP_07426753.1| ribonuclease rphA [Mycobacterium tuberculosis SUMu004]
gi|306792760|ref|ZP_07431062.1| ribonuclease rphA [Mycobacterium tuberculosis SUMu005]
gi|306797164|ref|ZP_07435466.1| ribonuclease rphA [Mycobacterium tuberculosis SUMu006]
gi|306803043|ref|ZP_07439711.1| ribonuclease rphA [Mycobacterium tuberculosis SUMu008]
gi|306807237|ref|ZP_07443905.1| ribonuclease rphA [Mycobacterium tuberculosis SUMu007]
gi|306967434|ref|ZP_07480095.1| ribonuclease rphA [Mycobacterium tuberculosis SUMu009]
gi|307079339|ref|ZP_07488509.1| ribonuclease rphA [Mycobacterium tuberculosis SUMu011]
gi|307083904|ref|ZP_07493017.1| ribonuclease rphA [Mycobacterium tuberculosis SUMu012]
gi|313658214|ref|ZP_07815094.1| ribonuclease PH [Mycobacterium tuberculosis KZN V2475]
gi|1710618|sp|Q10628|RNPH_MYCTU RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|166228291|sp|A1KID0|RNPH_MYCBP RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|166228295|sp|A5U240|RNPH_MYCTA RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|254808595|sp|C1AMY5|RNPH_MYCBT RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|1419043|emb|CAA99973.1| PROBABLE RIBONUCLEASE RPHA (RNase PH) (tRNA nucleotidyltransferase)
[Mycobacterium tuberculosis H37Rv]
gi|13880990|gb|AAK45646.1| ribonuclease PH [Mycobacterium tuberculosis CDC1551]
gi|121492918|emb|CAL71389.1| Probable ribonuclease rphA [Mycobacterium bovis BCG str. Pasteur
1173P2]
gi|134149750|gb|EBA41795.1| ribonuclease rphA (RNase ph) [Mycobacterium tuberculosis str.
Haarlem]
gi|148505281|gb|ABQ73090.1| ribonuclease PH [Mycobacterium tuberculosis H37Ra]
gi|148721088|gb|ABR05713.1| ribonuclease rphA (RNase ph) [Mycobacterium tuberculosis F11]
gi|224772858|dbj|BAH25664.1| ribonuclease [Mycobacterium bovis BCG str. Tokyo 172]
gi|253321115|gb|ACT25718.1| ribonuclease rphA [Mycobacterium tuberculosis KZN 1435]
gi|289415701|gb|EFD12941.1| ribonuclease PH [Mycobacterium tuberculosis T46]
gi|289419893|gb|EFD17094.1| ribonuclease rphA [Mycobacterium tuberculosis CPHL_A]
gi|289439500|gb|EFD21993.1| ribonuclease rphA [Mycobacterium tuberculosis KZN 605]
gi|289543107|gb|EFD46755.1| ribonuclease rphA [Mycobacterium tuberculosis T17]
gi|289685620|gb|EFD53108.1| ribonuclease PH [Mycobacterium tuberculosis 02_1987]
gi|289690483|gb|EFD57912.1| ribonuclease rphA [Mycobacterium tuberculosis T92]
gi|289694009|gb|EFD61438.1| ribonuclease rphA [Mycobacterium tuberculosis EAS054]
gi|289709007|gb|EFD73023.1| ribonuclease rphA (RNase ph) [Mycobacterium tuberculosis GM 1503]
gi|289713009|gb|EFD77021.1| ribonuclease rphA [Mycobacterium tuberculosis T85]
gi|298494641|gb|EFI29935.1| ribonuclease PH [Mycobacterium tuberculosis 94_M4241A]
gi|308215991|gb|EFO75390.1| ribonuclease rphA [Mycobacterium tuberculosis SUMu001]
gi|308326498|gb|EFP15349.1| ribonuclease rphA [Mycobacterium tuberculosis SUMu002]
gi|308331139|gb|EFP19990.1| ribonuclease rphA [Mycobacterium tuberculosis SUMu003]
gi|308334980|gb|EFP23831.1| ribonuclease rphA [Mycobacterium tuberculosis SUMu004]
gi|308338786|gb|EFP27637.1| ribonuclease rphA [Mycobacterium tuberculosis SUMu005]
gi|308342427|gb|EFP31278.1| ribonuclease rphA [Mycobacterium tuberculosis SUMu006]
gi|308346338|gb|EFP35189.1| ribonuclease rphA [Mycobacterium tuberculosis SUMu007]
gi|308350261|gb|EFP39112.1| ribonuclease rphA [Mycobacterium tuberculosis SUMu008]
gi|308354910|gb|EFP43761.1| ribonuclease rphA [Mycobacterium tuberculosis SUMu009]
gi|308362791|gb|EFP51642.1| ribonuclease rphA [Mycobacterium tuberculosis SUMu011]
gi|308366438|gb|EFP55289.1| ribonuclease rphA [Mycobacterium tuberculosis SUMu012]
gi|323720157|gb|EGB29260.1| ribonuclease rphA [Mycobacterium tuberculosis CDC1551A]
gi|326902963|gb|EGE49896.1| ribonuclease rphA [Mycobacterium tuberculosis W-148]
gi|328459358|gb|AEB04781.1| ribonuclease rphA [Mycobacterium tuberculosis KZN 4207]
Length = 259
Score = 160 bits (405), Expect = 1e-37, Method: Composition-based stats.
Identities = 110/238 (46%), Positives = 155/238 (65%), Gaps = 1/238 (0%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R GR ++++R + +TR ++ GS L++FG T +L TA++ E VP W + T GW+TA
Sbjct: 4 REDGRLDHELRPVIITRGFTENPAGSVLIEFGHTKVLCTASVTEGVPRWRKATGLGWLTA 63
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
EY MLP +T +R RE+V GR GR+QEI R+IGR+LR+ +DL+ALG I IDCDV+QA
Sbjct: 64 EYAMLPSATHSRSDRESVRGRLSGRTQEISRLIGRSLRACIDLAALGENTIAIDCDVLQA 123
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
DGGTRTAAITGA+VAL D + K + L +AA+S G++ G VDL Y E
Sbjct: 124 DGGTRTAAITGAYVALADA-VTYLSAAGKLSDPRPLSCAIAAVSVGVVDGRIRVDLPYEE 182
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
DS +VD N V TD+G +VE+QG+ E ATF++ +L++A L Q+D ++
Sbjct: 183 DSRAEVDMNVVATDTGTLVEIQGTGEGATFARSTLDKLLDMALGACDTLFAAQRDALA 240
>gi|149927537|ref|ZP_01915791.1| polynucleotide phosphorylase/polyadenylase [Limnobacter sp. MED105]
gi|149823810|gb|EDM83036.1| polynucleotide phosphorylase/polyadenylase [Limnobacter sp. MED105]
Length = 714
Score = 160 bits (405), Expect = 1e-37, Method: Composition-based stats.
Identities = 42/240 (17%), Positives = 93/240 (38%), Gaps = 18/240 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +R I++ V A GS L G+T L TL +E++ +
Sbjct: 320 RIDGRDTRTVRPITVRTGVLPRAHGSALFTRGETQALVVTTLGTGRDEQMIDAVAGEYRD 379
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y M P +TG + A R+ G + RA+ ++ + + +
Sbjct: 380 RFMFHYNMPPYATGECGRMGAPKRREIGHGRL----ARRAVEMMLPAPEDFQYTMRVVSE 435
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ G ++L D ++ + + + + A+ +
Sbjct: 436 ITESNGSSSMASVCGGALSLMDAGVPLKQLVAGIAMGLIKEENKFAVLTD---------I 486
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T++G + +Q + +++ L A++ ++ + K+
Sbjct: 487 LGDEDHLGDMDFKVAGTENG-VTALQMDIKIQGITKEIMQVALAQAREGRMHILGIMKEA 545
Score = 72.6 bits (176), Expect = 4e-11, Method: Composition-based stats.
Identities = 34/226 (15%), Positives = 69/226 (30%), Gaps = 27/226 (11%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT----KHGWITAEYGMLPR 68
++L +++ A GS +V DT +L T + + G +P
Sbjct: 16 VTLETGEIARQAGGSVIVTVDDTVVLATVVAAKSAKPGQDFFPLTVDYVEKFYAAGRIPG 75
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
R G+ + R+I R LR + Q+ + I +
Sbjct: 76 GFFKR------EGKGTEQETLNARLIDRPLRPLFPEGFFNEVQVTLTVMSINPEVNPDIP 129
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+ GA AL G V G + +++ + +D
Sbjct: 130 AMLGASAALSIAGI-------------PFNGPVGGARVGYINDQYVLNPTATQLKDSKMD 176
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
T++ ++ V+ A S++ + +++ I
Sbjct: 177 LIVAGTEA-AVLMVESEAHE--LSEEIMLGGIMFGHEQMQAAINAI 219
>gi|323705394|ref|ZP_08116969.1| polyribonucleotide nucleotidyltransferase [Thermoanaerobacterium
xylanolyticum LX-11]
gi|323535296|gb|EGB25072.1| polyribonucleotide nucleotidyltransferase [Thermoanaerobacterium
xylanolyticum LX-11]
Length = 700
Score = 160 bits (405), Expect = 1e-37, Method: Composition-based stats.
Identities = 46/244 (18%), Positives = 89/244 (36%), Gaps = 18/244 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56
+R+ GR + +R I+ V GS + G T ++T AT + ++ + + +
Sbjct: 311 IRVDGRGLDDIRPITCDVGVLPRTHGSAIFTRGQTQVMTVATLGPLGDIQILDGLGDEES 370
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P S G R+ G RAL ++ I +
Sbjct: 371 KRYMHHYNFPPFSVGETRPLRGPGRREIGHGAL----AERALEPMIPSEEEFPYTIRLVS 426
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V+ ++G T A++ G+ +AL D ++ + + +G + +I
Sbjct: 427 EVLSSNGSTSQASVCGSTLALMDAGVPIKAPVAGVAMGLIKEGDIVSILTD--------- 477
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T+ G I +Q + A +D L A+ ++ +
Sbjct: 478 IQGIEDFLGDMDFKVAGTEKG-ITAIQMDIKIAGIDRDILSLALEKARKGRLFILNKMLE 536
Query: 237 VISN 240
I
Sbjct: 537 TIKE 540
Score = 112 bits (280), Expect = 4e-23, Method: Composition-based stats.
Identities = 41/234 (17%), Positives = 80/234 (34%), Gaps = 27/234 (11%)
Query: 12 REISLTRRVSKY-AEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKHGWITAEYGML 66
R++ + A GS LV++GDT +L TA E V + + + G +
Sbjct: 12 RKLIVQTGKLAQLANGSALVRYGDTVVLVTACASKEPREGVDFFPLSVDYEERLYSVGKI 71
Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
P R G+ ++ R+I R +R + Q+I + D
Sbjct: 72 PGGFIKR------EGKPTEKAILTSRLIDRPIRPLFPHGYRNDVQVIATVLSVDPDVQPE 125
Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
A+ G+ VA G ++S ++ G I++ D D
Sbjct: 126 IVAMIGSSVA-------------LSISDIPFNGPTGSVSVALVDGNFIINPDLEAREKSD 172
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
+ T I+ V+ A ++ + A + I +++ + ++
Sbjct: 173 LHLTVSGTKD-AIMMVEAGANEVP--EEVMLDAIMYAHEYIKQIVEFIEGIVKE 223
>gi|256824846|ref|YP_003148806.1| RNAse PH [Kytococcus sedentarius DSM 20547]
gi|256688239|gb|ACV06041.1| RNAse PH [Kytococcus sedentarius DSM 20547]
Length = 288
Score = 160 bits (405), Expect = 1e-37, Method: Composition-based stats.
Identities = 111/226 (49%), Positives = 151/226 (66%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R GR +Q+R++ +TR +A GS L++FG T +L A+ + VP W++ GW+T
Sbjct: 23 RHDGRAPDQLRDVRITRGWLDHAAGSVLIEFGRTRVLCAASFQPGVPRWLKGQGTGWVTG 82
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
EY MLP +T R RE+V G+ GR+QEI R++GRALR+ VD SALG I+IDCDV+QA
Sbjct: 83 EYAMLPAATHTRSDRESVKGKVKGRTQEISRLLGRALRAAVDTSALGENTIVIDCDVLQA 142
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
DGGTRTAAITGAWVAL D + + + +QVL+ + AIS G++ G P++DLDY E
Sbjct: 143 DGGTRTAAITGAWVALADAVAAGKASGDIPANAQVLRDSIQAISVGIVDGQPVLDLDYPE 202
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRI 227
DS D N VMT +G +VEVQG+AE TF + A+L+LA+D
Sbjct: 203 DSGAGADMNVVMTGAGELVEVQGTAEGQTFDRAMLNALLDLAQDGC 248
>gi|295676033|ref|YP_003604557.1| polyribonucleotide nucleotidyltransferase [Burkholderia sp.
CCGE1002]
gi|295435876|gb|ADG15046.1| polyribonucleotide nucleotidyltransferase [Burkholderia sp.
CCGE1002]
Length = 711
Score = 160 bits (405), Expect = 1e-37, Method: Composition-based stats.
Identities = 47/242 (19%), Positives = 91/242 (37%), Gaps = 18/242 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHG 57
R+ GR +R I + V GS L G+T L AT +E+ +
Sbjct: 322 RIDGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQALVVATLGTKGDEQSIDALEGEYRE 381
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y M P +TG + + R+ G + RAL + + + I + +
Sbjct: 382 RFMLHYNMPPFATGETGRVGSPKRREIGHGRL----AKRALVACLPSADEFGYSIRVVSE 437
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ G +AL D M+ + +L+G+ A+ +
Sbjct: 438 ITESNGSSSMASVCGGCLALMDAGVPMKAHVAGIAMGLILEGNRFAVLTD---------I 488
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T+ G + +Q + +++ L AK+ ++
Sbjct: 489 LGDEDHLGDMDFKVAGTEQG-VTALQMDIKIQGITKEIMQVALAQAKEGRMHILGKMTSA 547
Query: 238 IS 239
+S
Sbjct: 548 VS 549
Score = 94.9 bits (234), Expect = 8e-18, Method: Composition-based stats.
Identities = 35/232 (15%), Positives = 73/232 (31%), Gaps = 27/232 (11%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT----KHGWITAEYGMLPR 68
+ L +++ A G+ +V DT +L T + + T G +P
Sbjct: 18 VRLETGEIARQASGAVIVDVEDTVVLATVVGAKTAKPGQDFFPLTVDYIEKTYAAGKIPG 77
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
R GR I R+I R LR + Q++I + +
Sbjct: 78 GFFRR------EGRPSEGETLISRLIDRPLRPLFPEGFYNEVQVVIHVLSLNPEIPADIP 131
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+ GA A G V A + +++ + +D
Sbjct: 132 ALIGASAA-------------LAVSGLPFNGPVGAARVAYINNEYVLNPTRPQMKESALD 178
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
T+ ++ V+ A++ S++ + +++ I +++
Sbjct: 179 LVVAGTER-AVLMVESEAQQ--LSEEVMLGAVVFGHEQMQTAIDAIHELVRE 227
>gi|253690467|ref|YP_003019657.1| ribonuclease PH [Pectobacterium carotovorum subsp. carotovorum PC1]
gi|259494124|sp|C6DIC7|RNPH_PECCP RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|251757045|gb|ACT15121.1| ribonuclease PH [Pectobacterium carotovorum subsp. carotovorum PC1]
Length = 238
Score = 160 bits (405), Expect = 1e-37, Method: Composition-based stats.
Identities = 118/238 (49%), Positives = 160/238 (67%), Gaps = 2/238 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR +GR Q+R + LTR +K+AEGS LV+FGDT +L AT+EE VP +++ GW+T
Sbjct: 1 MRPTGRSAQQVRPLKLTRHYTKHAEGSVLVEFGDTKVLCNATVEEGVPRFLKGQGQGWVT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPR+T +R REA G+QGGR+ EIQR+I R+LR+ +DL LG I +DCDV+Q
Sbjct: 61 AEYGMLPRATHSRNAREAAKGKQGGRTLEIQRLIARSLRAAIDLKVLGEYTITLDCDVLQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+ITGA VAL D L M +KG VAA+S G++ G + DL+Y
Sbjct: 121 ADGGTRTASITGACVALADALNQMVAN--GKLKKNPMKGMVAAVSVGIVNGEALCDLEYV 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
EDS + D N VMT+ G ++EVQG+AE FS + ++L LA+ I +++ QK +
Sbjct: 179 EDSAAETDMNVVMTEDGRMIEVQGTAEGEPFSHEELLSLLALARGGIETIVQAQKAAL 236
>gi|28198628|ref|NP_778942.1| ribonuclease PH [Xylella fastidiosa Temecula1]
gi|71274728|ref|ZP_00651016.1| Ribonuclease PH [Xylella fastidiosa Dixon]
gi|71899591|ref|ZP_00681746.1| Ribonuclease PH [Xylella fastidiosa Ann-1]
gi|71900258|ref|ZP_00682395.1| Ribonuclease PH [Xylella fastidiosa Ann-1]
gi|170730030|ref|YP_001775463.1| ribonuclease PH [Xylella fastidiosa M12]
gi|182681311|ref|YP_001829471.1| ribonuclease PH [Xylella fastidiosa M23]
gi|32129976|sp|Q87DG3|RNPH_XYLFT RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|226736953|sp|B2IA38|RNPH_XYLF2 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|226736954|sp|B0U6W7|RNPH_XYLFM RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|28056712|gb|AAO28591.1| ribonuclease PH [Xylella fastidiosa Temecula1]
gi|71164460|gb|EAO14174.1| Ribonuclease PH [Xylella fastidiosa Dixon]
gi|71729971|gb|EAO32065.1| Ribonuclease PH [Xylella fastidiosa Ann-1]
gi|71730633|gb|EAO32709.1| Ribonuclease PH [Xylella fastidiosa Ann-1]
gi|167964823|gb|ACA11833.1| tRNA nucleotidyltransferase [Xylella fastidiosa M12]
gi|182631421|gb|ACB92197.1| ribonuclease PH [Xylella fastidiosa M23]
gi|307579762|gb|ADN63731.1| ribonuclease PH [Xylella fastidiosa subsp. fastidiosa GB514]
Length = 241
Score = 160 bits (405), Expect = 1e-37, Method: Composition-based stats.
Identities = 119/239 (49%), Positives = 163/239 (68%), Gaps = 2/239 (0%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R SGRQ + +R + + R + +AEGS LV FG+T ++ TA++E KVP+++RN GWITA
Sbjct: 5 RPSGRQADALRPVRIERAFTCHAEGSVLVSFGNTLVVCTASVEAKVPVFLRNKGEGWITA 64
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
EYGMLPRST R +REA G+Q GR+ EIQR+IGRALR+ VD +ALG R I +DCDV+QA
Sbjct: 65 EYGMLPRSTHTRSEREAARGKQAGRTLEIQRLIGRALRTCVDRTALGERTITLDCDVLQA 124
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
DGGTRTAAITGA+VAL D ++ +E + + VAA+S G+ G P++DLDY E
Sbjct: 125 DGGTRTAAITGAYVALVDAVRCLEQRGQLKKSPLIGA--VAAVSVGIYRGMPVLDLDYPE 182
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
DS D D N VM D G +E+QG+AE+ F + +L LA+ A L +Q++ ++
Sbjct: 183 DSDCDTDMNVVMNDEGGFIELQGTAEQQAFRRGELDMLLALAERGTAMLFDIQREALAR 241
>gi|15838106|ref|NP_298794.1| ribonuclease PH [Xylella fastidiosa 9a5c]
gi|21759420|sp|Q9PD74|RNPH_XYLFA RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|9106537|gb|AAF84314.1|AE003980_6 ribonuclease PH [Xylella fastidiosa 9a5c]
Length = 241
Score = 160 bits (405), Expect = 1e-37, Method: Composition-based stats.
Identities = 118/239 (49%), Positives = 164/239 (68%), Gaps = 2/239 (0%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R SGRQ + +R + + R + +AEGS LV FG+T ++ TA++E KVP+++RN GW+TA
Sbjct: 5 RPSGRQADALRPVRIERAFTCHAEGSVLVSFGNTLVVCTASVEAKVPVFLRNKGEGWVTA 64
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
EYGMLPRST R +REA G+Q GR+ EIQR+IGRALR+ VD +ALG R I +DCDV+QA
Sbjct: 65 EYGMLPRSTHTRSEREAARGKQAGRTLEIQRLIGRALRTCVDRTALGERTITLDCDVLQA 124
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
DGGTRTAAITGA+VAL D ++ +E + + VAA+S G+ G P++DLDY E
Sbjct: 125 DGGTRTAAITGAYVALVDAVRCLEQRGQLKKSPLIGA--VAAVSVGIYRGMPVLDLDYPE 182
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
DS D D N VM D G ++E+QG+AE+ F + +L LA+ A L +Q++ ++
Sbjct: 183 DSDCDTDMNVVMNDEGGVIELQGTAEQQAFRRGELDMLLALAERGTAMLFDIQREALAR 241
>gi|319944048|ref|ZP_08018328.1| polyribonucleotide nucleotidyltransferase [Lautropia mirabilis ATCC
51599]
gi|319742809|gb|EFV95216.1| polyribonucleotide nucleotidyltransferase [Lautropia mirabilis ATCC
51599]
Length = 704
Score = 160 bits (405), Expect = 1e-37, Method: Composition-based stats.
Identities = 49/241 (20%), Positives = 96/241 (39%), Gaps = 18/241 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +R IS+ V A GS L G+T L ATL +E++ I
Sbjct: 315 RIDGRDTRTVRPISIRTGVLPRAHGSALFTRGETQALVVATLGTARDEQIIDAITGEYRE 374
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
+Y M P +TG + R+ G + RA+ ++V + I + +
Sbjct: 375 RFMMQYNMPPYATGETGRIGTPKRREVGHGRL----AKRAITALVPSQEDFAYSIRLVSE 430
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ G +AL D +E + + +G+ A+ +
Sbjct: 431 ITESNGSSSMASVCGGCLALMDAGVPVERHVAGIAMGLIKEGNKFAVLTD---------I 481
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T+ G + +Q + +++ L A++ ++ ++
Sbjct: 482 LGDEDHLGDMDFKVAGTEQG-VTALQMDIKIQGITREIMQVALAQAREARMHILGKMQEA 540
Query: 238 I 238
I
Sbjct: 541 I 541
Score = 104 bits (259), Expect = 1e-20, Method: Composition-based stats.
Identities = 36/231 (15%), Positives = 78/231 (33%), Gaps = 27/231 (11%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPM----WIRNTKHGWITAEYGMLPR 68
++L +++ A GS LV DT +L T + + + G +P
Sbjct: 16 VTLETGEIARQASGSVLVTIDDTMVLATVVAAREPKPGQSFFPLTVDYFEKFYAAGRIPG 75
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
R GR + R+I R +R + + Q+++ +
Sbjct: 76 GFFKR------EGRPTEKETLTARLIDRPIRPLFPEGFMNEVQVVLTVLSSNPEIDADIP 129
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+ GA A G V A G + G +++ + +D
Sbjct: 130 AMIGASAA-------------LAISGVPFNGPVGAARVGYIDGQYVLNPSASQLKESKLD 176
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
T ++ V+ +E + S+D + +++ +I+ ++++
Sbjct: 177 LVVAGT-DQAVLMVE--SEASELSEDVMLGAVVFGHEQMQTVIQAIEELVE 224
>gi|187610326|sp|A1B5P9|PNP_PARDP RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
Length = 715
Score = 160 bits (405), Expect = 1e-37, Method: Composition-based stats.
Identities = 45/243 (18%), Positives = 88/243 (36%), Gaps = 17/243 (6%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +R I GS L G+T L TL +E++ +
Sbjct: 318 RIDGRDNKTVRPIDCEVGFLPRTHGSSLFTRGETQALVVTTLGTGDDEQIIDALHGNSRS 377
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + + R+ G + RAL++V+ I + +
Sbjct: 378 NFLLHYNFPPYSVGEVGRVGSPGRREIGHGKL----AWRALQAVLPAPTDFPYTIRVVSE 433
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ G +++ D ++ + +L+ + D+
Sbjct: 434 ITESNGSSSMASVCGGSLSMMDAGVPLKAPVAGVAMGLILEED--------GRWAVLTDI 485
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T++G I +Q + A + + L AKD ++
Sbjct: 486 LGDEDHLGDMDFKVAGTENG-ITSLQMDIKVAGITPEIMEQALAQAKDGRLHILGEMSKA 544
Query: 238 ISN 240
+S
Sbjct: 545 LSE 547
Score = 105 bits (261), Expect = 7e-21, Method: Composition-based stats.
Identities = 30/232 (12%), Positives = 66/232 (28%), Gaps = 33/232 (14%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT----KHGWITAEYGMLPR 68
++L V++ A+GS + G+T ++ T ++ + G +P
Sbjct: 16 LTLETGKVARQADGSVIATLGETSVMANVTFAKEPKPGQDFFPLTVHYQEKYYAAGKIPG 75
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
R R + R+I R +R + ++
Sbjct: 76 GFFKR------EARPSEKETLTARLIDRPIRPLFVPGFKHEVLVMCTVLSHDLVNDPDIV 129
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDST---- 184
A+ A A G +AA G G +++ + +
Sbjct: 130 AMIAASAA-------------LTISGVPFMGPIAAARVGFADGEYVLNPEVQDMDHLRLN 176
Query: 185 --IDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
+D T ++ V+ A ++ + + + +I L
Sbjct: 177 PEQRLDLVVAGTRD-AVMMVESEAYE--LTEAEMLGAVKFGHEAMQPVIDLI 225
>gi|15827593|ref|NP_301856.1| ribonuclease PH [Mycobacterium leprae TN]
gi|221230070|ref|YP_002503486.1| ribonuclease PH [Mycobacterium leprae Br4923]
gi|585906|sp|P37939|RNPH_MYCLE RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|254808596|sp|B8ZR59|RNPH_MYCLB RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|466905|gb|AAA50880.1| rnpH [Mycobacterium leprae]
gi|13093144|emb|CAC31555.1| ribonuclease PH [Mycobacterium leprae]
gi|219933177|emb|CAR71269.1| ribonuclease PH [Mycobacterium leprae Br4923]
Length = 259
Score = 160 bits (405), Expect = 1e-37, Method: Composition-based stats.
Identities = 104/238 (43%), Positives = 154/238 (64%), Gaps = 1/238 (0%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R GR ++++R + +TR +++ GS L++FG T ++ TA+ E VP W + + GW+TA
Sbjct: 4 RADGRLDDELRAVVITRGFTEHPAGSVLIEFGHTKVMCTASPTEGVPRWRKGSGKGWLTA 63
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
EY MLP +T R +RE+V GR GR+QEI R+IGR+LR+ +DL+ALG I +DCDV+QA
Sbjct: 64 EYAMLPSATHTRSERESVKGRLSGRTQEISRLIGRSLRACIDLAALGENTIAVDCDVLQA 123
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
DGGTRTAA+TGA+VAL D + + + L +AA+S G++ G VDL Y E
Sbjct: 124 DGGTRTAAVTGAYVALADA-VTYLSAAGRLLDPRPLSCAIAAVSVGVVDGRIRVDLSYEE 182
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
DS +VD N + TD+G +VE+QG+ E ATF + +L++A L Q+D ++
Sbjct: 183 DSRAEVDMNVIATDTGTLVEIQGTGEGATFPRSTLDKLLDMALGACDKLFVAQRDALA 240
>gi|218290095|ref|ZP_03494257.1| Polyribonucleotide nucleotidyltransferase [Alicyclobacillus
acidocaldarius LAA1]
gi|218239804|gb|EED06993.1| Polyribonucleotide nucleotidyltransferase [Alicyclobacillus
acidocaldarius LAA1]
Length = 735
Score = 160 bits (405), Expect = 1e-37, Method: Composition-based stats.
Identities = 45/240 (18%), Positives = 84/240 (35%), Gaps = 10/240 (4%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+R GR+ +++R IS + GS L G T L+ TL + + +
Sbjct: 310 IRPDGRRLDEIRPISCEVGLLPRTHGSALFTRGQTQALSVCTLGSMGDEQLLDGLELEKS 369
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
Y V R + RAL V+ I + ++++
Sbjct: 370 NRYMHHYNFPPFSVGEAKPLRAPSRRDIGHGALGERALDPVIPSPEEFPYAIRVVSEILE 429
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
++G T A+I G+ +AL D ++ + V +G AI +
Sbjct: 430 SNGSTSQASICGSTMALMDAGVPIKAPVAGIAMGLVKEGDQVAILSD---------IQGI 480
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
ED D+D T+ G + +Q + + + L A++ ++ + IS
Sbjct: 481 EDHLGDMDFKVAGTERG-VTALQMDIKISGIDRSILERALKQAREGRMYILSKMMEAISE 539
Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats.
Identities = 35/235 (14%), Positives = 75/235 (31%), Gaps = 27/235 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATL---EEKVPMWIRNTKHGWITAEYGMLP 67
R L +++ A + V++G+T +L T T +++ + + G +P
Sbjct: 12 RRFVLETGKLARQATAAVHVQYGETVVLATVTASKEPKELDFFPLTVNYEERLYAVGKIP 71
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R GR + R+I R +R + QI+ + D
Sbjct: 72 GGFIKR------EGRPSEHAILASRLIDRPIRPLFPEGFRNDVQIVDLVLSVDQDCAPEI 125
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
AA+ G ++ G + + G++ G +++ + D+
Sbjct: 126 AAMIGT-------------SASLTISDIPFNGPIGGVIVGLVDGQFVINPTVEQSEKSDL 172
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNEV 242
T IV V+ A + ++ + I + + +V
Sbjct: 173 HLVVAGTKD-AIVMVEAGANQVP--EEIVLEAILYGHQVIQTICDEIN-AFAQKV 223
>gi|307634882|gb|ADI84427.2| polyribonucleotide nucleotidyltransferase [Geobacter sulfurreducens
KN400]
Length = 740
Score = 160 bits (405), Expect = 1e-37, Method: Composition-based stats.
Identities = 49/242 (20%), Positives = 88/242 (36%), Gaps = 18/242 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTT----ATLEEKVPMWIRNTKHG 57
R+ GR +R IS+ + A GS L G+T L +++E+ +
Sbjct: 356 RIDGRDTTTIRPISIEVSMLPRAHGSALFTRGETQALVASTLGTSIDEQRIDSLYGETRK 415
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G R A R+ G RAL VV I I D
Sbjct: 416 RFLLHYNFPPFSVGETSFRLAPGRREIGHGML----AERALERVVPKHEDFPYTIRIVSD 471
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+++++G + A + G +A+ D ++ + + +G AI +
Sbjct: 472 ILESNGSSSMATVCGGALAMMDAGVPIKAPVAGIAMGLIKEGEGIAILSD---------I 522
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T++G + +Q + +++ L A+D ++
Sbjct: 523 LGDEDHLGDMDFKVAGTEAG-VTAIQMDIKITGVTREIMEKALLQARDGRLHILGKMNQA 581
Query: 238 IS 239
I+
Sbjct: 582 IA 583
Score = 101 bits (250), Expect = 1e-19, Method: Composition-based stats.
Identities = 43/228 (18%), Positives = 74/228 (32%), Gaps = 27/228 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTKHGWITAEYGML 66
R I++ +K A G+ +V GDT +L TA + E + + G +
Sbjct: 56 RTITIATGKWAKQASGAVVVSCGDTVVLVTAVATKSAREGQDFFPLTVNYQEKAYAGGKI 115
Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
P R GR R I R +R + S L QI+ D
Sbjct: 116 PGGFFKR------EGRPSDNETLTSRFIDRPIRPLFPESFLNDTQIMATVVSADQDNDPG 169
Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
A+ GA A G +A + G + G + + + D
Sbjct: 170 ILAMIGASAA-------------LEVSDIPFLGPIAGVKVGRVDGQFVCNPTVEQLEKSD 216
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
++ + ++ V+G A A S+ + + +I+ Q
Sbjct: 217 LEIVVAASRD-AVIMVEGGAAEA--SEKDVLEAIFFGHAAVQPIIEAQ 261
>gi|227495770|ref|ZP_03926081.1| ribonuclease PH [Actinomyces urogenitalis DSM 15434]
gi|226834699|gb|EEH67082.1| ribonuclease PH [Actinomyces urogenitalis DSM 15434]
Length = 263
Score = 160 bits (405), Expect = 1e-37, Method: Composition-based stats.
Identities = 110/240 (45%), Positives = 155/240 (64%), Gaps = 2/240 (0%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R GR +++R +++TRR ++ EGS LV+FG T +L A+ E VP W + + GW+TA
Sbjct: 9 RKDGRATDELRPVTITRRWQEHGEGSVLVEFGRTRVLCVASFTEGVPRWRKGSGEGWVTA 68
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
EY MLPR+ R RE+V G+ GGR+ EI R+IGRALR VVD++ALG I +DCDV+QA
Sbjct: 69 EYAMLPRAGSERSGRESVRGKVGGRTHEISRLIGRALRGVVDVAALGENTIALDCDVLQA 128
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQL--SQVLKGHVAAISCGMLCGYPIVDLDY 179
DGGTRTA++TGA+VAL D + + V+ ++AIS G++ G P +DL Y
Sbjct: 129 DGGTRTASVTGAYVALADAVAWGTERGLISPRAGKPVIADSLSAISVGIIDGVPCLDLPY 188
Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
ED D N V T +G +EVQG+AE A F++D A+L+LA +L +LQK V++
Sbjct: 189 EEDVRAHTDMNVVQTGAGKFIEVQGTAEHAPFNRDELCALLDLATKGNGELAELQKAVLA 248
>gi|322436088|ref|YP_004218300.1| ribonuclease PH [Acidobacterium sp. MP5ACTX9]
gi|321163815|gb|ADW69520.1| ribonuclease PH [Acidobacterium sp. MP5ACTX9]
Length = 245
Score = 160 bits (404), Expect = 1e-37, Method: Composition-based stats.
Identities = 115/238 (48%), Positives = 151/238 (63%), Gaps = 2/238 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
R R NQ+R +T EGS L++ G+T +L AT+E VP W+RN+ GW+T
Sbjct: 6 FRPDNRTANQLRPTRITPGYVSTPEGSVLIEVGNTRVLCNATIETGVPGWMRNSGKGWVT 65
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPR+T R REA G+ GGR+ EIQR+IGR+LR +VD+ ALG R II+DCDV+Q
Sbjct: 66 AEYGMLPRATLTRSPREAEKGKIGGRTHEIQRLIGRSLRGIVDMRALGERTIILDCDVLQ 125
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTAAITGA VAL L + LK +AA S G++ G ++DL Y
Sbjct: 126 ADGGTRTAAITGASVALAIALGKLVQAGTLKAS--PLKQMIAATSVGIVDGNTLLDLAYE 183
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
EDS VD N VM SG +VE Q +AE+ ++S+ ML+LA+ I DL+ LQ+ +
Sbjct: 184 EDSRATVDMNVVMLASGGLVETQATAEKDSYSRQQLTEMLDLAEAGIRDLLILQQTAL 241
>gi|206901853|ref|YP_002250868.1| polyribonucleotide nucleotidyltransferase [Dictyoglomus
thermophilum H-6-12]
gi|254782719|sp|B5YEB0|PNP_DICT6 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|206740956|gb|ACI20014.1| polyribonucleotide nucleotidyltransferase [Dictyoglomus
thermophilum H-6-12]
Length = 693
Score = 160 bits (404), Expect = 1e-37, Method: Composition-based stats.
Identities = 48/240 (20%), Positives = 92/240 (38%), Gaps = 17/240 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT---LEEKVPMWIRNTKHGW 58
R+ GR+ N++R +S V K GS L + G+T +L+ T EE++ + ++
Sbjct: 315 RVDGRKLNEIRPVSCEVGVLKRVHGSALFQRGETQVLSVVTLGAGEEQIIESVIESEPKR 374
Query: 59 ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDV 118
Y P S G R+ G RAL ++ I + +V
Sbjct: 375 YIHHYNFPPFSVGEAKPLRGPKRREIGHGAL----AERALLPLIPKEEEFPYTIRVVSEV 430
Query: 119 IQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLD 178
+ ++G T A++ G+ ++L D ++ + + +G + +
Sbjct: 431 LSSNGSTSMASVCGSSLSLMDAGVPIKTHVAGVAMGLIKEGDRFEVLTD---------IQ 481
Query: 179 YGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
ED+ +D T +G I VQ + S + L AK+ ++ + + I
Sbjct: 482 GLEDALGGMDFKIAGTRNG-ITAVQLDIKVDGLSYEIIERTLKQAKEARYQILDIMEKTI 540
Score = 114 bits (286), Expect = 9e-24, Method: Composition-based stats.
Identities = 42/233 (18%), Positives = 83/233 (35%), Gaps = 27/233 (11%)
Query: 13 EISLTRR-VSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKHGWITAEYGMLP 67
E+ + V+ A G+ LV++G+T +L T E V + ++ G +P
Sbjct: 15 ELKIDIGKVAWQATGAALVQYGETTVLVTVVASEDKKEDVDFFPLTVEYVERLYAAGKIP 74
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R G+ R+I R LR + Q+I+ + T
Sbjct: 75 GGFFKR------EGKPTEPEILFARLIDRPLRPLFAKDFRNEVQVIVTVLSYDHENSTDI 128
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
+I GA A+ KG + A+ G ++ +++ +
Sbjct: 129 PSIIGASCAIILAG-------------LPFKGPIGAVRIGWDGNEWYINPPVTLSNSLLL 175
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
D T ++ ++G + +D F + A + D+I Q++++S
Sbjct: 176 DLVVAGTKD-AVLMIEGDGKEVP--EDIFLEGIIKAHSAMLDVINFQEEILSQ 225
>gi|289578380|ref|YP_003477007.1| polyribonucleotide nucleotidyltransferase [Thermoanaerobacter
italicus Ab9]
gi|289528093|gb|ADD02445.1| polyribonucleotide nucleotidyltransferase [Thermoanaerobacter
italicus Ab9]
Length = 700
Score = 160 bits (404), Expect = 1e-37, Method: Composition-based stats.
Identities = 48/244 (19%), Positives = 88/244 (36%), Gaps = 18/244 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56
+R+ GR + +R I V GS + G T +LT AT + ++ I + +
Sbjct: 312 IRVDGRGLDDIRPIWCEVGVLPRTHGSAIFTRGQTQVLTVATLGALGDIQILDGIGDEEA 371
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P S G R+ G RAL V+ I +
Sbjct: 372 KRYMHHYNFPPYSVGEVRPLRGPGRREIGHGAL----AERALEPVIPSEEEFPYTIRLVS 427
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V+ ++G T A++ G+ +AL D ++ + + +G V ++
Sbjct: 428 EVLSSNGSTSQASVCGSTLALMDAGVPIKAPVAGVAMGLIKEGDVVSVLTD--------- 478
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T+ G I +Q + ++ L A+ ++ +
Sbjct: 479 IQGIEDFLGDMDFKVAGTEKG-ITAIQMDIKIPGIDKEILKMALEKARKGRLYILSKMLE 537
Query: 237 VISN 240
VI
Sbjct: 538 VIKE 541
Score = 102 bits (255), Expect = 4e-20, Method: Composition-based stats.
Identities = 40/223 (17%), Positives = 79/223 (35%), Gaps = 27/223 (12%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKHGWITAEYGML 66
R++ + V++ A G+ VK+GDT +L TA E + + ++ G +
Sbjct: 13 RKLIVQTGKVAQQANGAAWVKYGDTVVLVTACASKEPREGIDFFPLTVEYEERLYSVGKI 72
Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
P R G+ ++ R+I R +R + QII + D
Sbjct: 73 PGGFIKR------EGKPSEKAILSARLIDRPIRPLFPHGYRNDVQIIATILSVDPDVQPE 126
Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
A+ G+ VA G A++ G++ G +++ ++ +
Sbjct: 127 IVAMIGSSVA-------------LSISDIPFNGPTGAVAVGLVDGQFVINPNHDQREKSL 173
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIAD 229
+ T IV V+ A+ ++ + A + I
Sbjct: 174 MHLVVSGTKD-AIVMVEAGAKEVP--EETMLEAIMYAHEYIKQ 213
>gi|317058280|ref|ZP_07922765.1| polyribonucleotide nucleotidyltransferase [Fusobacterium sp.
3_1_5R]
gi|313683956|gb|EFS20791.1| polyribonucleotide nucleotidyltransferase [Fusobacterium sp.
3_1_5R]
Length = 707
Score = 160 bits (404), Expect = 1e-37, Method: Composition-based stats.
Identities = 51/243 (20%), Positives = 92/243 (37%), Gaps = 18/243 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR ++R + V GS L G+T L TATL +E++ + +
Sbjct: 324 RVDGRTTTEIRPLDAQINVLPIPHGSALFTRGETQSLATATLGTKDDEQLVDNLEKEYYK 383
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + A R+ G RALR V+ I + D
Sbjct: 384 KFYLHYNFPPYSVGETGRMGAPGRRELGHGSL----AERALRYVIPTEEEFPYTIRVVSD 439
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A+I G +AL +++ + + +G + ++
Sbjct: 440 ITESNGSSSQASICGGSLALMSAGVPIKEHVAGIAMGLIKEGEEFTVLTDIM-------- 491
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T SG I +Q + +++ LN A ++++
Sbjct: 492 -GLEDHLGDMDFKVAGTKSG-ITALQMDIKITGITEEIMRIALNQAHVARQQILEVMNTA 549
Query: 238 ISN 240
IS+
Sbjct: 550 ISS 552
Score = 104 bits (258), Expect = 1e-20, Method: Composition-based stats.
Identities = 34/233 (14%), Positives = 77/233 (33%), Gaps = 27/233 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKV----PMWIRNTKHGWITAEYGML 66
R + ++ +++ + G+ ++++GDT LL+T ++ + + G
Sbjct: 14 RTLKVSTGKIARQSCGAVMIQYGDTVLLSTVNRSKEPRKGADFFPLTVDYIEKFYAAGKF 73
Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
P R R + + R+I R +R + I+
Sbjct: 74 PGGFNKR------ESRPSTDATLVARLIDRPIRPMFPEGFTYDVHIVNTVFSFDEQNTPD 127
Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
I G+ +A G VA ++ G + G I++ +
Sbjct: 128 YLGIIGSSLA-------------LSISDIPFLGPVAGVTVGYIDGEFILNPSPEQLEKSL 174
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
+D + T + V+ A+ ++ + A D I + Q++ +
Sbjct: 175 LDLSVAGTKD-AVNMVEAGAKE--LDEETMLKAILFAHDNIKKICAFQEEFVK 224
>gi|257451721|ref|ZP_05617020.1| polynucleotide phosphorylase/polyadenylase [Fusobacterium sp.
3_1_5R]
Length = 743
Score = 160 bits (404), Expect = 1e-37, Method: Composition-based stats.
Identities = 51/243 (20%), Positives = 92/243 (37%), Gaps = 18/243 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR ++R + V GS L G+T L TATL +E++ + +
Sbjct: 360 RVDGRTTTEIRPLDAQINVLPIPHGSALFTRGETQSLATATLGTKDDEQLVDNLEKEYYK 419
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + A R+ G RALR V+ I + D
Sbjct: 420 KFYLHYNFPPYSVGETGRMGAPGRRELGHGSL----AERALRYVIPTEEEFPYTIRVVSD 475
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A+I G +AL +++ + + +G + ++
Sbjct: 476 ITESNGSSSQASICGGSLALMSAGVPIKEHVAGIAMGLIKEGEEFTVLTDIM-------- 527
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T SG I +Q + +++ LN A ++++
Sbjct: 528 -GLEDHLGDMDFKVAGTKSG-ITALQMDIKITGITEEIMRIALNQAHVARQQILEVMNTA 585
Query: 238 ISN 240
IS+
Sbjct: 586 ISS 588
Score = 104 bits (258), Expect = 1e-20, Method: Composition-based stats.
Identities = 34/233 (14%), Positives = 77/233 (33%), Gaps = 27/233 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKV----PMWIRNTKHGWITAEYGML 66
R + ++ +++ + G+ ++++GDT LL+T ++ + + G
Sbjct: 50 RTLKVSTGKIARQSCGAVMIQYGDTVLLSTVNRSKEPRKGADFFPLTVDYIEKFYAAGKF 109
Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
P R R + + R+I R +R + I+
Sbjct: 110 PGGFNKR------ESRPSTDATLVARLIDRPIRPMFPEGFTYDVHIVNTVFSFDEQNTPD 163
Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
I G+ +A G VA ++ G + G I++ +
Sbjct: 164 YLGIIGSSLA-------------LSISDIPFLGPVAGVTVGYIDGEFILNPSPEQLEKSL 210
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
+D + T + V+ A+ ++ + A D I + Q++ +
Sbjct: 211 LDLSVAGTKD-AVNMVEAGAKE--LDEETMLKAILFAHDNIKKICAFQEEFVK 260
>gi|16124290|ref|NP_418854.1| polynucleotide phosphorylase/polyadenylase [Caulobacter crescentus
CB15]
gi|221232972|ref|YP_002515408.1| polynucleotide phosphorylase/polyadenylase [Caulobacter crescentus
NA1000]
gi|81536356|sp|Q9AC32|PNP_CAUCR RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|254782712|sp|B8GWZ0|PNP_CAUCN RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|13421126|gb|AAK22022.1| polyribonucleotide nucleotidyltransferase [Caulobacter crescentus
CB15]
gi|220962144|gb|ACL93500.1| polyribonucleotide nucleotidyltransferase/polynucleotide
adenylyltransferase [Caulobacter crescentus NA1000]
Length = 712
Score = 160 bits (404), Expect = 1e-37, Method: Composition-based stats.
Identities = 45/241 (18%), Positives = 86/241 (35%), Gaps = 18/241 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
+R+ GR +R I + GS L G+T + ATL +E+ + T
Sbjct: 316 LRIDGRDVKTVRPILGEVGILPRTHGSALFTRGETQAIVVATLGTGDDEQFIDALEGTYK 375
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P S G + + R+ G + RALR ++ I +
Sbjct: 376 ESFLLHYNFPPYSVGETGRMGSPGRREIGHGKL----AWRALRPMLPTKEDFPYTIRLVS 431
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
++ +++G + A + G+ +A+ D + + + +L+ A+
Sbjct: 432 EITESNGSSSMATVCGSSLAMMDAGVPLVRPVSGIAMGLILEQDGFAVLSD--------- 482
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T G + +Q + A + L AK+ A ++
Sbjct: 483 ILGDEDHLGDMDFKVAGTSEG-LTSLQMDIKIAGITPAIMEQALAQAKEGRAHILGEMNK 541
Query: 237 V 237
Sbjct: 542 A 542
Score = 104 bits (260), Expect = 8e-21, Method: Composition-based stats.
Identities = 36/233 (15%), Positives = 75/233 (32%), Gaps = 28/233 (12%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----HGWITAEYGMLPR 68
+ L +++ A+G+ L G+T +L TA + + T G +P
Sbjct: 16 LVLETGRIARQADGAVLATMGETVVLATAVFAKSQKPGQDFFPLTVNYQEKTFAAGKIPG 75
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
R GR + + R+I R +R + Q+++ +
Sbjct: 76 GFFKR------EGRPSEKETLVSRLIDRPIRPLFVKGFKNEVQVVVTVLQHDLENDPDIL 129
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
+ A AL + A G + G +++ E +D
Sbjct: 130 GMVAASAALCLSGAPFMG-------------PIGAARVGWVDGAYVLNPTLDEMKESKMD 176
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
T ++ V+ +E S++ +N A ++ +I D ++
Sbjct: 177 LVVAGTAD-AVMMVE--SEIQELSEEIVLGGVNFAHQQMQAVIDAIID-LAEH 225
>gi|212212692|ref|YP_002303628.1| polynucleotide phosphorylase/polyadenylase [Coxiella burnetii
CbuG_Q212]
gi|226702642|sp|B6J0K5|PNP_COXB2 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|212011102|gb|ACJ18483.1| polyribonucleotide nucleotidyltransferase [Coxiella burnetii
CbuG_Q212]
Length = 696
Score = 160 bits (404), Expect = 2e-37, Method: Composition-based stats.
Identities = 42/241 (17%), Positives = 87/241 (36%), Gaps = 18/241 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +R I++ V + GS L G+T L TL + + + +
Sbjct: 318 RIDGRDSKTVRPITVKVGVLPRSHGSALFTRGETQALVVTTLGTERDAQSIDDLDGDRQE 377
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P G R+ G + RA+ VV I + +
Sbjct: 378 EFIFHYNFPPFCVGEVGFMSGPKRREIGHGRL----AKRAVVPVVPTLDKFPYVIRVVSE 433
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+++++G + A++ G+ +AL D + + + + A+ +
Sbjct: 434 ILESNGSSSMASVCGSSLALMDAGVPTKAPVAGIAMGLIKENDKYAVLSD---------I 484
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T +G + +Q + +++ L+ AK+ ++ + V
Sbjct: 485 LGDEDHLGDMDFKVAGTSNG-VTALQMDIKIEGITKEIMEQALDQAKEGRLHILSIMNKV 543
Query: 238 I 238
+
Sbjct: 544 L 544
Score = 95.3 bits (235), Expect = 7e-18, Method: Composition-based stats.
Identities = 41/233 (17%), Positives = 73/233 (31%), Gaps = 27/233 (11%)
Query: 13 EISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGMLP 67
E++ +++ A G+ +V+ GDT LL + EE + + T G +P
Sbjct: 14 EVTFETGEMARQATGAVVVRMGDTVLLVSVVAKKEAEEGRDFFPLTINYQEKTYAAGKIP 73
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R GR + R+I R LR + Q+I + + T
Sbjct: 74 GGYFKR------EGRPTEKETLTSRLIDRPLRPLFPKGFTNEVQVIATVLSVDSKVPTDI 127
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
AI GA A G + A G G +++ E +
Sbjct: 128 PAILGASAA-------------IGLSGIPFNGSLGAARVGYRGGEYLLNPSLDELKDSAL 174
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
D T ++ V+ A+ + + + I+ + I
Sbjct: 175 DLVVAGTRD-AVLMVESEAQE--LPESVMLGAVLHGHQAMQVAIQAIAEFIQE 224
>gi|332188380|ref|ZP_08390105.1| ribonuclease PH [Sphingomonas sp. S17]
gi|332011609|gb|EGI53689.1| ribonuclease PH [Sphingomonas sp. S17]
Length = 238
Score = 160 bits (404), Expect = 2e-37, Method: Composition-based stats.
Identities = 124/239 (51%), Positives = 166/239 (69%), Gaps = 2/239 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR SGR +QMR I++ +++AEGS L+ FGDT +L TA++EE+VP ++R GW+T
Sbjct: 1 MRPSGRMPDQMRPITIEPNFTRHAEGSVLIGFGDTKVLVTASVEERVPPFLRGKGEGWVT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPR+T R REA G+Q GR+QEIQR+IGR+LR+V DL ALG RQI +DCDVIQ
Sbjct: 61 AEYGMLPRATHTRGSREAAKGKQSGRTQEIQRLIGRSLRAVCDLKALGERQITLDCDVIQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTAAI+GAWVAL + + S ++ VAA+SCG+ G P++DLDY
Sbjct: 121 ADGGTRTAAISGAWVALRMAVNKLMAE--GKLTSDPIRHKVAAVSCGIHQGTPVLDLDYI 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
EDS D DANFV+ ++GHI EVQ +AE AT+ ++ +L LA+ ++ Q+ I
Sbjct: 179 EDSNADADANFVLIENGHIAEVQATAEHATYDEEALLRLLRLARMGCTEIFAAQERAIR 237
>gi|319898331|ref|YP_004158424.1| polyribonucleotide nucleotidyltransferase [Bartonella clarridgeiae
73]
gi|319402295|emb|CBI75834.1| polyribonucleotide nucleotidyltransferase [Bartonella clarridgeiae
73]
Length = 733
Score = 160 bits (404), Expect = 2e-37, Method: Composition-based stats.
Identities = 44/243 (18%), Positives = 85/243 (34%), Gaps = 18/243 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR + +R I + GS L G+T L TL +E+ +
Sbjct: 317 RIDGRNPSDVRAIQSEVGILPRTHGSALFTRGETQALVVTTLGTGEDEQYIDSLTGMYKE 376
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + + R+ G + RA+ ++ I +
Sbjct: 377 TFLLHYNFPPFSVGEIGRIGSPGRREIGHGKL----AWRAIHPMLPTKESFPYTIRTVSE 432
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A + G +AL D + + + +G AI +
Sbjct: 433 ITESNGSSSMATVCGTSLALMDAGVPLARPVAGIAMGLIKEGEKFAILSD---------I 483
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T++G I +Q + +++ L AKD ++
Sbjct: 484 LGDEDHLGDMDFKVAGTENG-ITSLQMDIKIDGITEEIMKIALAQAKDGRIHILNEMAKA 542
Query: 238 ISN 240
+++
Sbjct: 543 LTS 545
Score = 100 bits (248), Expect = 2e-19, Method: Composition-based stats.
Identities = 34/228 (14%), Positives = 70/228 (30%), Gaps = 27/228 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPM----WIRNTKHGWITAEYGML 66
R + L +++ A+G+ + +G+T +L T + + + G +
Sbjct: 14 RPLILETGKIARQADGAIIATYGETVVLATVVSAKTPKPDQNFFPLTVNYQEKNYAVGKI 73
Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
P R R I R+I R +R + Q+I+ +
Sbjct: 74 PGGYFKR------ENRPNESETLISRLIDRPIRPLFVEGYKNDTQVIVSVIQHDLENNPD 127
Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
AI + A G +AA G G I++ + E
Sbjct: 128 ILAIIASSAA-------------LTLSGIPFMGPIAAARIGYCNGQYILNPNIDEMPESK 174
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
+D T++ ++ V+ A ++ + + +I
Sbjct: 175 LDLVVAGTEN-AVLMVESEAHE--LPENVMLNAIMFGQKSFQPVINAI 219
>gi|55981108|ref|YP_144405.1| polynucleotide phosphorylase/polyadenylase [Thermus thermophilus
HB8]
gi|81364132|sp|Q5SJ75|PNP_THET8 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|55772521|dbj|BAD70962.1| polynucleotide phosphorylase [Thermus thermophilus HB8]
Length = 713
Score = 160 bits (404), Expect = 2e-37, Method: Composition-based stats.
Identities = 51/241 (21%), Positives = 92/241 (38%), Gaps = 18/241 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R GR +R I + V A GS + G+T +L T TL +E++ + +
Sbjct: 327 RADGRGPKDLRPIWIEVDVLPRAHGSAVFTRGETQVLGTVTLGTGRDEQILDDLGIDETE 386
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P STG + VS R+ G RAL++V+ I + D
Sbjct: 387 KFLVHYNFPPFSTGEVRRLRGVSRREVGHGNL----AKRALKAVMPKEEDFPYTIRVVGD 442
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
V++++G + A + +AL D + + V + + A I +
Sbjct: 443 VLESNGSSSMATVCAGCLALMDAGVPIRAPVAGVAMGLVWEENRAVILTD---------I 493
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED+ D+D T G + +Q + ++ L A++ ++ L + V
Sbjct: 494 LGLEDALGDMDFKVAGTRKG-VTALQMDNKVGGLPREVLKEALLQAREARLKILDLMEAV 552
Query: 238 I 238
+
Sbjct: 553 L 553
Score = 114 bits (284), Expect = 1e-23, Method: Composition-based stats.
Identities = 44/235 (18%), Positives = 81/235 (34%), Gaps = 27/235 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEE---KVPMWIRNTKHGWITAEYGMLP 67
R + L +K A GS LV++ DT +L TA E + + G +P
Sbjct: 20 RPLVLETGKYAKQASGSVLVRYADTVVLATAQASETPVEADFLPLTVEFEERHYAVGKIP 79
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
S R GR G ++ RM R +R + QII+
Sbjct: 80 GSFMRR------EGRPGEKAILSARMTDRPIRPLFPKGFRHEVQIIVTVLSADQKNPPDI 133
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
+ + +G +AA+ G++ G +++ E +
Sbjct: 134 LG-------------PIAASAALMLSDIPWEGPIAAVRVGLIGGSFVLNPTLQELEESQL 180
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNEV 242
D + I+ V+ AE ++ L A + +++LQ + ++ E+
Sbjct: 181 DLVVAGSKE-AILMVE--AEAGEVDEETLVQALEFAHKEMQPILELQ-EAMAREL 231
>gi|226940843|ref|YP_002795917.1| polynucleotide phosphorylase/polyadenylase [Laribacter
hongkongensis HLHK9]
gi|254782724|sp|C1D8W8|PNP_LARHH RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|226715770|gb|ACO74908.1| Pnp [Laribacter hongkongensis HLHK9]
Length = 701
Score = 160 bits (404), Expect = 2e-37, Method: Composition-based stats.
Identities = 46/241 (19%), Positives = 95/241 (39%), Gaps = 18/241 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +R I++ V A GS L G+T L + TL +E++ +
Sbjct: 316 RIDGRDTRTVRPIAIRTGVLPRAHGSVLFTRGETQALVSTTLGTKQDEQIIDALAGEYTD 375
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P STG + R+ G + RAL +V+ S + + +
Sbjct: 376 RFMLHYNFPPYSTGETGRMGPPKRREIGHGRL----AKRALIAVLPKQEDFSYSMRVVSE 431
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ G ++L + + + +L+ + A+ +
Sbjct: 432 ITESNGSSSMASVCGGCLSLMNAGVPLSAHVAGIAMGLILEDNRFAVLTD---------I 482
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T++G + +Q + +++ L+ AK+ ++ + K
Sbjct: 483 LGDEDHLGDMDFKVAGTENG-VTALQMDIKIQGITKEIMQVALDQAKEGRLHILGIMKSA 541
Query: 238 I 238
I
Sbjct: 542 I 542
Score = 100 bits (248), Expect = 2e-19, Method: Composition-based stats.
Identities = 41/234 (17%), Positives = 81/234 (34%), Gaps = 28/234 (11%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT----KHGWITAEYGMLPR 68
+ L +++ A GS LV DT +L T+ + V + T G +P
Sbjct: 16 VKLETGEIARQASGSVLVSMDDTVVLVAVTVNKDVKPGQDFFPLTVDYYERTYAAGKIPG 75
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
R G+Q + R+I R +R + Q++ + +
Sbjct: 76 GFFKR------EGKQSEKEILTCRLIDRPIRPLFPAGFYHDVQVVATVMSLNPEVDADIP 129
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+ GA A+ + A G G I++ E +T +D
Sbjct: 130 AMIGASAAMVLAGVPFMG-------------PIGAARVGYANGEYILNPTKTELTTSQLD 176
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNEV 242
T+S ++ V+ A++ + + +++ IK + +++EV
Sbjct: 177 LVVAGTES-AVLMVESEAQQ--LPEAVMLGAVVYGHEQMQAAIKAINE-LADEV 226
>gi|269120588|ref|YP_003308765.1| polyribonucleotide nucleotidyltransferase [Sebaldella termitidis
ATCC 33386]
gi|268614466|gb|ACZ08834.1| Polyribonucleotide nucleotidyltransferase [Sebaldella termitidis
ATCC 33386]
Length = 710
Score = 160 bits (404), Expect = 2e-37, Method: Composition-based stats.
Identities = 45/243 (18%), Positives = 82/243 (33%), Gaps = 18/243 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKHG 57
R GR+ ++R I + GS L G+T L T TL E++ +
Sbjct: 320 RPDGRKTEEIRPIDVEIDTLPIPHGSALFTRGETQALVTVTLGSRVNEQIVDGMEEESRK 379
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G A R+ G RAL+ ++ I + +
Sbjct: 380 KFYLHYNFPPYSVGEAGFMRAPGRRELGHGSL----AERALKYMIPEQEDFPYTIRVVSE 435
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A+I G +AL M+ + + + + +
Sbjct: 436 ITESNGSSSQASICGGSLALMAAGVPMKSSVAGIAMGLIKENEEFVVLTD---------I 486
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T +G I +Q + +++ L A + ++ V
Sbjct: 487 QGLEDHLGDMDFKVAGTKNG-ITALQMDIKITGITREIMEIALKQAHNGRMFILDKMNAV 545
Query: 238 ISN 240
I
Sbjct: 546 IPE 548
Score = 99.5 bits (246), Expect = 3e-19, Method: Composition-based stats.
Identities = 39/232 (16%), Positives = 73/232 (31%), Gaps = 27/232 (11%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGMLPR 68
+ ++ +++ A G+ +V+ G T LL TAT + E + + G P
Sbjct: 16 VKISSGKIARQASGAVIVECGKTVLLVTATRSKEVREGTDFFPLTVDYIEKFYASGKFPG 75
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
R R I R+I R +R + I+I
Sbjct: 76 GFIKR------ESRPSTDEVLIARLIDRPIRPLFPEGFFYGVHIVITVISFDEVNLPENL 129
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A G A G V ++ G + G +++ E D++
Sbjct: 130 ATLGVSAA-------------LSISDIPFAGPVGGVNVGYIDGKFVLNPTPEELEISDIE 176
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
+ T + V+ A +D + +I ++ + Q+ IS
Sbjct: 177 LSVAGTAD-AVTMVEAGANE--IPEDIMLEAIMFGHGKIKEMCEEQEKFISQ 225
>gi|189424733|ref|YP_001951910.1| polynucleotide phosphorylase/polyadenylase [Geobacter lovleyi SZ]
gi|257096692|sp|B3EAF2|PNP_GEOLS RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|189420992|gb|ACD95390.1| Polyribonucleotide nucleotidyltransferase [Geobacter lovleyi SZ]
Length = 703
Score = 160 bits (404), Expect = 2e-37, Method: Composition-based stats.
Identities = 46/243 (18%), Positives = 89/243 (36%), Gaps = 18/243 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
+R+ GR +R I++ + A GS L G+T +L ATL +E+ +
Sbjct: 314 IRIDGRDTKTVRPIAIEAGLLPRAHGSTLFTRGETQVLAAATLGTSQDEQRMDSLYGEYR 373
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P S G R A R+ G RA+ +++ I I
Sbjct: 374 KKFMLHYNFPPFSVGETSFRLAPGRREIGHGML----AERAISAILPNHDDFPYTIRIVA 429
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+ ++++G + A + G ++L D ++ + + +G AI
Sbjct: 430 ETLESNGSSSMATVCGGCLSLMDAGVPVKAPVAGIAMGLIKEGEKVAILTD--------- 480
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D + G + +Q + S++ L AK+ ++
Sbjct: 481 ILGDEDHLGDMDFKVAGSADG-VTALQMDIKIGGVSKEIMQQALKQAKEGRLHILGKMAQ 539
Query: 237 VIS 239
++
Sbjct: 540 CLA 542
Score = 101 bits (251), Expect = 1e-19, Method: Composition-based stats.
Identities = 43/235 (18%), Positives = 84/235 (35%), Gaps = 28/235 (11%)
Query: 13 EISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----HGWITAEYGMLP 67
+ ++ ++K A G+ ++ GDT +L T ++ + T G +P
Sbjct: 16 NVKISTGKMAKQASGAVVISSGDTMVLVTVVGTKEAKPGQDFFPLTVNYTEKTYAGGKIP 75
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
S R GR I R+I R +R + S L Q++ + D
Sbjct: 76 GSFFKR------EGRPSEDETLICRLIDRPIRPLFPESYLCDTQVMATVISAEEDHDPAI 129
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
++ GA AL +G +A + G + G I + + D+
Sbjct: 130 LSMIGASAALM-------------ISDIPFEGPIAGVKVGRVDGKLIANPSAEQLKLSDL 176
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNEV 242
+ I V+ E S++ + AKD + ++ Q++ ++ +V
Sbjct: 177 EIVVAAGKD-AIFMVE--GEADFVSEEDLLEAVFFAKDAVQGILAAQEE-LARQV 227
>gi|295687493|ref|YP_003591186.1| polyribonucleotide nucleotidyltransferase [Caulobacter segnis ATCC
21756]
gi|295429396|gb|ADG08568.1| polyribonucleotide nucleotidyltransferase [Caulobacter segnis ATCC
21756]
Length = 712
Score = 160 bits (404), Expect = 2e-37, Method: Composition-based stats.
Identities = 45/241 (18%), Positives = 86/241 (35%), Gaps = 18/241 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
+R+ GR +R I + GS L G+T + ATL +E+ + T
Sbjct: 316 LRIDGRDVRTVRPILGEVGILPRTHGSALFTRGETQAIVVATLGTGDDEQFIDALEGTYK 375
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P S G + + R+ G + RALR ++ I +
Sbjct: 376 ESFLLHYNFPPYSVGETGRMGSPGRREIGHGKL----AWRALRPMLPSKEDFPYTIRLVS 431
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
++ +++G + A + G+ +A+ D + + + +L+ A+
Sbjct: 432 EITESNGSSSMATVCGSSLAMMDAGVPLVRPVSGIAMGLILEKDGFAVLSD--------- 482
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T G + +Q + A + L AK+ A ++
Sbjct: 483 ILGDEDHLGDMDFKVAGTSEG-LTSLQMDIKIAGITPQIMEQALAQAKEGRAHILGEMNK 541
Query: 237 V 237
Sbjct: 542 A 542
Score = 104 bits (258), Expect = 2e-20, Method: Composition-based stats.
Identities = 36/233 (15%), Positives = 75/233 (32%), Gaps = 28/233 (12%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----HGWITAEYGMLPR 68
+ L +++ A+G+ L G+T +L TA + + T G +P
Sbjct: 16 LVLETGRIARQADGAVLATMGETVVLATAVFAKSQKPGQDFFPLTVNYQEKTFAAGKIPG 75
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
R GR + + R+I R +R + Q+++ +
Sbjct: 76 GFFKR------EGRPSEKETLVSRLIDRPIRPLFVKGFKNEVQVVVTVLQHDLENDPDIL 129
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
+ A A G + A G + G +++ E +D
Sbjct: 130 GMVAASAA-------------LTLSGAPFMGPIGAARVGWVDGAYVLNPTLDEMKESKMD 176
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
T ++ V+ +E S++ +N A ++ +I D ++
Sbjct: 177 LVVAGTAD-AVMMVE--SEIQELSEEIVLGGVNFAHQQMQAVIDAIID-LAEH 225
>gi|119385483|ref|YP_916539.1| polynucleotide phosphorylase/polyadenylase [Paracoccus
denitrificans PD1222]
gi|119375250|gb|ABL70843.1| 3' exoribonuclease [Paracoccus denitrificans PD1222]
Length = 736
Score = 160 bits (404), Expect = 2e-37, Method: Composition-based stats.
Identities = 45/243 (18%), Positives = 88/243 (36%), Gaps = 17/243 (6%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +R I GS L G+T L TL +E++ +
Sbjct: 339 RIDGRDNKTVRPIDCEVGFLPRTHGSSLFTRGETQALVVTTLGTGDDEQIIDALHGNSRS 398
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + + R+ G + RAL++V+ I + +
Sbjct: 399 NFLLHYNFPPYSVGEVGRVGSPGRREIGHGKL----AWRALQAVLPAPTDFPYTIRVVSE 454
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ G +++ D ++ + +L+ + D+
Sbjct: 455 ITESNGSSSMASVCGGSLSMMDAGVPLKAPVAGVAMGLILEED--------GRWAVLTDI 506
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T++G I +Q + A + + L AKD ++
Sbjct: 507 LGDEDHLGDMDFKVAGTENG-ITSLQMDIKVAGITPEIMEQALAQAKDGRLHILGEMSKA 565
Query: 238 ISN 240
+S
Sbjct: 566 LSE 568
Score = 104 bits (260), Expect = 7e-21, Method: Composition-based stats.
Identities = 30/232 (12%), Positives = 66/232 (28%), Gaps = 33/232 (14%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT----KHGWITAEYGMLPR 68
++L V++ A+GS + G+T ++ T ++ + G +P
Sbjct: 37 LTLETGKVARQADGSVIATLGETSVMANVTFAKEPKPGQDFFPLTVHYQEKYYAAGKIPG 96
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
R R + R+I R +R + ++
Sbjct: 97 GFFKR------EARPSEKETLTARLIDRPIRPLFVPGFKHEVLVMCTVLSHDLVNDPDIV 150
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDST---- 184
A+ A A G +AA G G +++ + +
Sbjct: 151 AMIAASAA-------------LTISGVPFMGPIAAARVGFADGEYVLNPEVQDMDHLRLN 197
Query: 185 --IDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
+D T ++ V+ A ++ + + + +I L
Sbjct: 198 PEQRLDLVVAGTRD-AVMMVESEAYE--LTEAEMLGAVKFGHEAMQPVIDLI 246
>gi|90420519|ref|ZP_01228426.1| polyribonucleotide nucleotidyltransferase [Aurantimonas
manganoxydans SI85-9A1]
gi|90335247|gb|EAS49000.1| polyribonucleotide nucleotidyltransferase [Aurantimonas
manganoxydans SI85-9A1]
Length = 710
Score = 160 bits (404), Expect = 2e-37, Method: Composition-based stats.
Identities = 48/243 (19%), Positives = 87/243 (35%), Gaps = 18/243 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +R+I + A GS L G+T L ATL +E+ + T
Sbjct: 317 RIDGRDLKTVRKIVSEAGILPRAHGSALFTRGETQALVVATLGTGEDEQFVDALTGTYKE 376
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + + R+ G + RALR ++ I +
Sbjct: 377 RFLLHYNFPPYSVGETGRMGSPGRREIGHGKL----AWRALRPMLPAPEQFPYTIRAVSE 432
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
V +++G + A + G +AL D ++ + + + A+ +
Sbjct: 433 VTESNGSSSMATVCGTSLALMDAGVPLKRSVAGIAMGLIKEDERFAVLSD---------I 483
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T G I +Q + +++ L+ AK +++
Sbjct: 484 LGDEDHLGDMDFKVAGTSEG-ITSLQMDIKIQGITEEIMQIALDQAKGGRLHILQEMGQA 542
Query: 238 ISN 240
+S
Sbjct: 543 LSE 545
Score = 116 bits (289), Expect = 3e-24, Method: Composition-based stats.
Identities = 35/235 (14%), Positives = 75/235 (31%), Gaps = 28/235 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----HGWITAEYGML 66
R ++L +++ A+G+ L +G+T +L T ++ + + T G +
Sbjct: 14 RPLTLETGKIARQADGAVLATYGETVVLATVVSAKQPKPGLDFFPLTVNYQEKTFAAGKI 73
Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
P R GR + + R+I R +R + Q+++ +
Sbjct: 74 PGGFFKR------EGRPSEKETLVSRLIDRPIRPLFAQGYKNETQVVVTVLQHDLENDPD 127
Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
A+ A A G + G + G ++ E S
Sbjct: 128 VLAMVAASAA-------------LTLSGVPFMGPIGGARVGYINGEYKLNPHVDEMSESQ 174
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
+D T+ G ++ V+ A ++D + +I ++
Sbjct: 175 LDLVVAGTE-GAVLMVESEAHE--LAEDIMLGAVMFGHRGFQPVIDAIIK-LAEH 225
>gi|227328057|ref|ZP_03832081.1| ribonuclease PH [Pectobacterium carotovorum subsp. carotovorum
WPP14]
Length = 238
Score = 160 bits (404), Expect = 2e-37, Method: Composition-based stats.
Identities = 117/238 (49%), Positives = 159/238 (66%), Gaps = 2/238 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR +GR Q+R ++ TR +K+AEGS LV+FGDT +L AT+EE VP +++ GW+T
Sbjct: 1 MRPTGRSAQQVRPLTFTRHYTKHAEGSVLVEFGDTKVLCNATVEEGVPRFLKGQGQGWVT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPR+T +R REA G+QGGR+ EIQR+I R+LR+ +DL LG I +DCDV+Q
Sbjct: 61 AEYGMLPRATHSRNAREAAKGKQGGRTLEIQRLIARSLRAAIDLKVLGEYTITLDCDVLQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+ITGA VAL D L M +KG VAA+S G++ G + DL+Y
Sbjct: 121 ADGGTRTASITGACVALADALNQMVAK--GKLKKNPMKGMVAAVSVGIVNGEALCDLEYV 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
EDS + D N VMT+ G ++EVQG+AE FS + +L LA+ I +++ QK +
Sbjct: 179 EDSAAETDMNVVMTEDGRMIEVQGTAEGEPFSHEELLTLLALARGGIDTIVQAQKAAL 236
>gi|320450042|ref|YP_004202138.1| polyribonucleotide nucleotidyltransferase [Thermus scotoductus
SA-01]
gi|320150211|gb|ADW21589.1| polyribonucleotide nucleotidyltransferase [Thermus scotoductus
SA-01]
Length = 714
Score = 160 bits (404), Expect = 2e-37, Method: Composition-based stats.
Identities = 51/241 (21%), Positives = 92/241 (38%), Gaps = 18/241 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R GR +R I + V GS + G+T +L T TL +E++ + +
Sbjct: 328 RADGRTPKDLRPIWIEVDVLPRTHGSAVFTRGETQVLGTVTLGTGRDEQIIDDLGIDETE 387
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P STG + VS R+ G RAL++V+ I + D
Sbjct: 388 KFLVHYNFPPFSTGEVKRLRGVSRREIGHGNL----AKRALKAVLPPEEAFPYTIRVVGD 443
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
V++++G + A + +AL D ++ + V +G A I +
Sbjct: 444 VLESNGSSSMATVCAGCLALMDAGVPLKAPVAGVAMGLVWEGERAVILTD---------I 494
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED+ D+D T G + +Q + ++ L A++ ++ L + V
Sbjct: 495 LGLEDALGDMDFKVAGTRKG-VTALQMDNKVGGLPREVLKEALMQAREARMKILDLMESV 553
Query: 238 I 238
+
Sbjct: 554 L 554
Score = 113 bits (282), Expect = 2e-23, Method: Composition-based stats.
Identities = 44/230 (19%), Positives = 79/230 (34%), Gaps = 26/230 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKV---PMWIRNTKHGWITAEYGMLP 67
R + L +K A GS LV++GDT +L TA E+ + G +P
Sbjct: 21 RPLVLEAGKYAKQASGSVLVRYGDTVVLATAQASEEPIEADFLPLTVEFEERHYAVGKIP 80
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
S R GR G ++ RM R +R + Q+I+
Sbjct: 81 GSFMRR------EGRPGEKAILSARMTDRPIRPLFPKGFRHEVQVIVTVLSADQKNPPDI 134
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
+ +G VAA+ G++ G +++ E S +
Sbjct: 135 LG-------------PTAASAALMLSDIPWEGPVAAVRVGLIGGQFVLNPTLQELSESAL 181
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
D + I+ V+ A+ ++ L A + ++ LQ+++
Sbjct: 182 DLVVAGSRD-AILMVEAGAQE--VDEEMLVQALEFAHREMQPILDLQEEI 228
>gi|297544656|ref|YP_003676958.1| polyribonucleotide nucleotidyltransferase [Thermoanaerobacter
mathranii subsp. mathranii str. A3]
gi|296842431|gb|ADH60947.1| polyribonucleotide nucleotidyltransferase [Thermoanaerobacter
mathranii subsp. mathranii str. A3]
Length = 700
Score = 160 bits (404), Expect = 2e-37, Method: Composition-based stats.
Identities = 48/244 (19%), Positives = 88/244 (36%), Gaps = 18/244 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56
+R+ GR + +R I V GS + G T +LT AT + ++ I + +
Sbjct: 312 IRVDGRGLDDIRPIWCEVGVLPRTHGSAIFTRGQTQVLTVATLGALGDIQILDGIGDEEA 371
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P S G R+ G RAL V+ I +
Sbjct: 372 KRYMHHYNFPPYSVGEVRPLRGPGRREIGHGAL----AERALEPVIPSEEEFPYTIRLVS 427
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V+ ++G T A++ G+ +AL D ++ + + +G V ++
Sbjct: 428 EVLSSNGSTSQASVCGSTLALMDAGVPIKAPVAGVAMGLIKEGDVVSVLTD--------- 478
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T+ G I +Q + ++ L A+ ++ +
Sbjct: 479 IQGIEDFLGDMDFKVAGTEKG-ITAIQMDIKIPGIDKEILKMALEKARKGRLYILSKMLE 537
Query: 237 VISN 240
VI
Sbjct: 538 VIKE 541
Score = 114 bits (286), Expect = 8e-24, Method: Composition-based stats.
Identities = 40/234 (17%), Positives = 86/234 (36%), Gaps = 27/234 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKHGWITAEYGML 66
R++ + V++ A G+ VK+GDT +L TA E + + ++ G +
Sbjct: 13 RKLIVQTGKVAQQANGAAWVKYGDTVVLVTACASKEPREGIDFFPLTVEYEERLYSVGKI 72
Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
P R G+ ++ R+I R +R + QII + D
Sbjct: 73 PGGFIKR------EGKPSEKAILSARLIDRPIRPLFPHGYRNDVQIIATILSVDPDVQPE 126
Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
A+ G+ VA G A++ G++ G +++ ++ +
Sbjct: 127 IVAMIGSSVA-------------LSISDIPFNGPTGAVAVGLVDGQFVINPNHDQREKSL 173
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
+ T IV V+ A+ ++ + A + I +++ ++++
Sbjct: 174 MHLVVSGTKD-AIVMVEAGAKEVP--EETMLEAIMYAHEYIKQIVEFIEEIVKE 224
>gi|182416017|ref|YP_001821083.1| ribonuclease PH [Opitutus terrae PB90-1]
gi|177843231|gb|ACB77483.1| ribonuclease PH [Opitutus terrae PB90-1]
Length = 260
Score = 160 bits (404), Expect = 2e-37, Method: Composition-based stats.
Identities = 105/239 (43%), Positives = 148/239 (61%), Gaps = 4/239 (1%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIR--NTKHGWI 59
R GR +Q+R I+ ++ YA GS LV FG T ++ A +E KVP+W+R + GW+
Sbjct: 17 RSDGRHPDQLRPITFEANIAPYATGSVLVSFGSTRVICAAMIEPKVPLWMRQQGVRGGWL 76
Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119
TAEY MLP ST +R R+ G+ GR+ EIQR+IGR+LR+VVDL LG + IDCDV+
Sbjct: 77 TAEYSMLPYSTLDRKPRDISKGKLDGRTVEIQRLIGRSLRAVVDLMKLGENTLWIDCDVL 136
Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179
QADGGTRTA+ITGA++A +Q + D + VAA+S G+ G ++DL+Y
Sbjct: 137 QADGGTRTASITGAYLATRLAVQRLVDA--GKLAENPVLDSVAAVSAGVCGGQELLDLNY 194
Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
ED +VDAN VMT G VE+Q S E ATF+ + ++ LA+ + ++ LQ +
Sbjct: 195 VEDKDAEVDANIVMTGRGQFVEMQSSGEEATFTHEQLLSLTALAQKGLKEIAALQTAFL 253
>gi|148553491|ref|YP_001261073.1| ribonuclease PH [Sphingomonas wittichii RW1]
gi|166228323|sp|A5V3R9|RNPH_SPHWW RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|148498681|gb|ABQ66935.1| RNAse PH [Sphingomonas wittichii RW1]
Length = 238
Score = 160 bits (404), Expect = 2e-37, Method: Composition-based stats.
Identities = 120/237 (50%), Positives = 161/237 (67%), Gaps = 2/237 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR SGR +QMR IS+ + +AEGS L+ FGDT +L TA++EEKVP ++R GW+T
Sbjct: 1 MRPSGRAPDQMRAISIETGFTVHAEGSVLISFGDTRVLVTASVEEKVPPFLRGKGQGWVT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPR+T R REA G+Q GR+QEIQR+IGR+LR+VVD++ LG RQI+IDCDV+Q
Sbjct: 61 AEYGMLPRATHTRGSREAAKGKQSGRTQEIQRLIGRSLRAVVDMAKLGERQIVIDCDVLQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+I+G WVAL + + + VAAISCG+ G P++DLDY
Sbjct: 121 ADGGTRTASISGGWVALRLAVDKLLAS--GAIAEDPITAQVAAISCGIHEGTPVLDLDYI 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
EDS DANFV+ D+G+I E Q +AE AT+ ++ +L LA+ ++ Q+
Sbjct: 179 EDSNAHADANFVLLDNGNIAEAQATAEGATYDEEALLRLLRLARIGCGEIFAAQRKA 235
>gi|325971218|ref|YP_004247409.1| polyribonucleotide nucleotidyltransferase [Spirochaeta sp. Buddy]
gi|324026456|gb|ADY13215.1| Polyribonucleotide nucleotidyltransferase [Spirochaeta sp. Buddy]
Length = 702
Score = 160 bits (404), Expect = 2e-37, Method: Composition-based stats.
Identities = 45/239 (18%), Positives = 88/239 (36%), Gaps = 7/239 (2%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R GR +Q+R I+ + GS L G+T L TL + +T G +
Sbjct: 316 RTDGRSVDQIRPITCEVGLLDRTHGSALFTRGETQALAVTTLGTASDEQMFDTIDGEKSF 375
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
ML + E G R + RAL ++V + + +++++
Sbjct: 376 SSFMLHYNFPPYSVGECGRLSTGRREIGHGHLAQRALEAIVPNKESFPYTVRVVSEIMES 435
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
+G + A++ G ++L D ++ + + +G + + D+ E
Sbjct: 436 NGSSSMASVCGGCLSLMDAGVPIKKPVAGIAMGLITEGADYS------KYVVLSDILGEE 489
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
D D+D + G I Q + A + + L AK ++ + + +SN
Sbjct: 490 DHLGDMDFKVAGSRDG-ITAFQMDIKIAGVTPEIMKKALEQAKQGRMHILSIMEGALSN 547
Score = 84.1 bits (206), Expect = 2e-14, Method: Composition-based stats.
Identities = 32/229 (13%), Positives = 73/229 (31%), Gaps = 27/229 (11%)
Query: 13 EISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----HGWITAEYGMLP 67
++ ++K G+ + + ++ T ++ + + G +P
Sbjct: 14 DLVFETGKIAKQTSGTVYAHYEGSAVIATVCCGKEPNEALDYVPLSVEYNEKYYAAGKIP 73
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R R + + R+I R +R + D + Q++
Sbjct: 74 GGFLKR------EARPKDKEILVSRLIDRPMRPLFDKAFGREIQVVPTV----------- 116
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
++ D + + G +AA+ M+ G +V+ + + +
Sbjct: 117 --VSSDMNNTPDIIAINAASAAVTISDIPFNGPIAAVRISMVDGAYVVNPTFSQIERSSL 174
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
D T G I V+G A+ S++ + A+ I L Q +
Sbjct: 175 DIVVAGTRDG-ITMVEGGAKE--VSEEVMLEAIATAQPYITKLCDAQLE 220
>gi|221632640|ref|YP_002521861.1| polynucleotide phosphorylase/polyadenylase [Thermomicrobium roseum
DSM 5159]
gi|257096714|sp|B9KYR9|PNP_THERP RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|221156259|gb|ACM05386.1| polyribonucleotide nucleotidyltransferase [Thermomicrobium roseum
DSM 5159]
Length = 790
Score = 160 bits (404), Expect = 2e-37, Method: Composition-based stats.
Identities = 51/241 (21%), Positives = 88/241 (36%), Gaps = 16/241 (6%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R GR+ +++REI + + GS L G T +LT TL EE+ + +
Sbjct: 325 RPDGRKPDEIREIWIQVGLLPRPHGSALFTRGQTQVLTVCTLGTKEEEQFLDSLGIEETK 384
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P STG + S R G RAL +V+ + + +
Sbjct: 385 RYMHHYNFPPFSTGEIRRLRGPSRRDIGHGAL----AERALLAVLPSEDEFPYTMRLVSE 440
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
V+ ++G T A++ G+ +AL D + + V + D+
Sbjct: 441 VLSSNGSTSMASVCGSSLALMDAGVPIRKPVAGVAMGLVTDQTTG-------RYTILTDI 493
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED+ D+D T G I +Q + + + L A+ ++ +V
Sbjct: 494 QGIEDALGDMDFKVAGTRDG-ITAIQMDIKVMGITPEIMRDALEQARRGRLFILDKMSEV 552
Query: 238 I 238
I
Sbjct: 553 I 553
Score = 108 bits (269), Expect = 7e-22, Method: Composition-based stats.
Identities = 42/237 (17%), Positives = 85/237 (35%), Gaps = 29/237 (12%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEK----VPMWIRNTKHGWITAEYGML 66
R +++ V++ A+G+ LV++G+T +LTT ++ + + ++ G +
Sbjct: 15 RLLTIETGRVAEQADGAVLVRYGETVVLTTVVGAKQPVEGIDFFPLTVEYEEKMYAAGKI 74
Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
P R G+ + R+ R +R + Q+I +
Sbjct: 75 PGGFFRR------EGKPSEAAILAARLTDRPIRPLFPKGYRNEVQVISTVLSADQENEPD 128
Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
+I GA A G V A+ G L G +++ +
Sbjct: 129 VLSIIGASAA-------------LTLSDIPWYGPVGAVRIGELDGELVINPTSHQLLESR 175
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD--VISNE 241
+D T I+ V+G A S+D F + A I ++ +Q + ++ +
Sbjct: 176 MDIVVAGTAD-AILMVEGQANE--ISEDRFIEAVVRAHQEIKRIVAVQLELQAVAGK 229
>gi|15887437|ref|NP_353118.1| polynucleotide phosphorylase/polyadenylase [Agrobacterium
tumefaciens str. C58]
gi|187470963|sp|A9CKQ7|PNP_AGRT5 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|15154950|gb|AAK85903.1| polyribonucleotide nucleotidyltransferase [Agrobacterium
tumefaciens str. C58]
Length = 713
Score = 160 bits (404), Expect = 2e-37, Method: Composition-based stats.
Identities = 44/243 (18%), Positives = 88/243 (36%), Gaps = 18/243 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR + +R I + GS L G+T + ATL +E+ +
Sbjct: 316 RIDGRDLSTVRPIVSEVGILPRTHGSALFTRGETQAIVVATLGTGEDEQYVDSLTGMYKE 375
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + + R+ G + RA+R ++ + + + +
Sbjct: 376 RFLLHYNFPPYSVGETGRMGSPGRREIGHGKL----AWRAIRPMLPTAEQFPYTLRVVSE 431
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A + G +AL D + + +L+G A+ +
Sbjct: 432 ITESNGSSSMATVCGTSLALMDAGVPLAKPVAGIAMGLILEGERFAVLSD---------I 482
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T G I +Q + A +++ L A+ ++ +
Sbjct: 483 LGDEDHLGDMDFKVAGTADG-ITSLQMDIKIAGITEEIMKIALEQAQGGRKHILGEMANA 541
Query: 238 ISN 240
I+
Sbjct: 542 ITE 544
Score = 111 bits (278), Expect = 7e-23, Method: Composition-based stats.
Identities = 32/228 (14%), Positives = 69/228 (30%), Gaps = 27/228 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----HGWITAEYGML 66
R + L V++ A+G+ + +G+T +L T + + T G +
Sbjct: 14 RPLKLETGKVARQADGAVIATYGETMVLATVVSAKSPKPGQDFFPLTVNYQEKTYAAGKI 73
Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
P R GR + + R+I R +R + Q+++ +
Sbjct: 74 PGGYFKR------EGRPSEKETLVSRLIDRPIRPLFPEGYKNDTQVVVTVIQHDLENDPD 127
Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
++ A A G V G + G +++ E
Sbjct: 128 VLSMVAASAA-------------LTLSGIPFMGPVGGARVGYINGEYVLNPHLDEMDESV 174
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
+D T ++ V+ A+ +++ + +I
Sbjct: 175 LDLVVAGTQD-AVLMVESEAKE--LNEEIMLGAVMFGHKGFQPVIDAI 219
>gi|308378909|ref|ZP_07484288.2| ribonuclease rphA [Mycobacterium tuberculosis SUMu010]
gi|308358854|gb|EFP47705.1| ribonuclease rphA [Mycobacterium tuberculosis SUMu010]
Length = 296
Score = 160 bits (404), Expect = 2e-37, Method: Composition-based stats.
Identities = 110/238 (46%), Positives = 155/238 (65%), Gaps = 1/238 (0%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R GR ++++R + +TR ++ GS L++FG T +L TA++ E VP W + T GW+TA
Sbjct: 41 REDGRLDHELRPVIITRGFTENPAGSVLIEFGHTKVLCTASVTEGVPRWRKATGLGWLTA 100
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
EY MLP +T +R RE+V GR GR+QEI R+IGR+LR+ +DL+ALG I IDCDV+QA
Sbjct: 101 EYAMLPSATHSRSDRESVRGRLSGRTQEISRLIGRSLRACIDLAALGENTIAIDCDVLQA 160
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
DGGTRTAAITGA+VAL D + K + L +AA+S G++ G VDL Y E
Sbjct: 161 DGGTRTAAITGAYVALADA-VTYLSAAGKLSDPRPLSCAIAAVSVGVVDGRIRVDLPYEE 219
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
DS +VD N V TD+G +VE+QG+ E ATF++ +L++A L Q+D ++
Sbjct: 220 DSRAEVDMNVVATDTGTLVEIQGTGEGATFARSTLDKLLDMALGACDTLFAAQRDALA 277
>gi|307825114|ref|ZP_07655335.1| polyribonucleotide nucleotidyltransferase [Methylobacter
tundripaludum SV96]
gi|307733862|gb|EFO04718.1| polyribonucleotide nucleotidyltransferase [Methylobacter
tundripaludum SV96]
Length = 692
Score = 160 bits (404), Expect = 2e-37, Method: Composition-based stats.
Identities = 44/242 (18%), Positives = 91/242 (37%), Gaps = 18/242 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR+ +++R I++ V GS L G+T L ATL + ++ +
Sbjct: 312 RIDGRELDKIRPITVRTGVLPRTHGSALFTRGETQALVVATLGTQRDAQIIDALAGEYKE 371
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + R+ G + R + +V+ I + +
Sbjct: 372 PFMLHYNFPPYSVGETGFVGSPKRREIGHGRL----AKRGVAAVLPNMEEFPYTIRVVSE 427
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
V +++G + A++ G+ +AL D ++ + + +G A+ ++
Sbjct: 428 VTESNGSSSMASVCGSSLALMDAGVPIKSPVAGIAMGLIKEGDSFAVLSDIM-------- 479
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D + G I +Q + + + + L+ AK ++
Sbjct: 480 -GDEDHLGDMDFKVAGSVDG-ITALQMDIKIDGITAEIMKSALDQAKHGRLHILGEMNKA 537
Query: 238 IS 239
+S
Sbjct: 538 LS 539
Score = 88.7 bits (218), Expect = 7e-16, Method: Composition-based stats.
Identities = 34/229 (14%), Positives = 71/229 (31%), Gaps = 26/229 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKV---PMWIRNTKHGWITAEYGMLP 67
R + L +++ A+G+ ++ T LL T +++ + + G +P
Sbjct: 13 RLVKLETGEIARQADGAVMIDVDGTTLLVTVVGKKQASGGDFFPLTVNYQEKAYAAGKIP 72
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R GR + R+I R +R + QII + +
Sbjct: 73 GGFFKR------EGRPSEKETLTSRLIDRPIRPLFPEGYTNEVQIIATVVSLNPEVDPEI 126
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
A+ GA + G V A + G G I++ +
Sbjct: 127 PALLGA-------------SAALAVSGLPFNGPVGAATVGYKDGEYILNPTPAALKESQL 173
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ T ++ V+ +E S++ + ++ I +
Sbjct: 174 ELVVAGTAH-AVLMVE--SEADNLSEEVMLGAVLFGHQQMQVAINAINE 219
>gi|258543760|ref|ZP_05703994.1| polyribonucleotide nucleotidyltransferase [Cardiobacterium hominis
ATCC 15826]
gi|258520996|gb|EEV89855.1| polyribonucleotide nucleotidyltransferase [Cardiobacterium hominis
ATCC 15826]
Length = 693
Score = 160 bits (404), Expect = 2e-37, Method: Composition-based stats.
Identities = 41/243 (16%), Positives = 89/243 (36%), Gaps = 18/243 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +R I++ V GS L G+T L ATL + ++ +
Sbjct: 312 RIDGRDTVTVRPITIRTGVLPRVHGSALFTRGETQALVVATLGTGRDAQIIDALTGEYRD 371
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + + R+ G + R + +++ + I + +
Sbjct: 372 IFMLHYNFPPFSVGETGRVGSPKRREIGHGRL----ARRGVTAILPPESTFPYTIRVVSE 427
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ G +AL D ++ + V +G + +
Sbjct: 428 ITESNGSSSMASVCGTSLALMDAGVPVKTPVAGIAMGLVKEGERFTVLSD---------I 478
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D + +G + +Q + +++ L AK ++++
Sbjct: 479 LGDEDHLGDMDFKVAGSANG-VTALQMDIKIDGITREIMEQALTQAKAGRLHILEIMNQA 537
Query: 238 ISN 240
I+
Sbjct: 538 IAQ 540
Score = 101 bits (251), Expect = 9e-20, Method: Composition-based stats.
Identities = 41/228 (17%), Positives = 78/228 (34%), Gaps = 27/228 (11%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTKHGWITAEYGMLPR 68
++L +++ A+G+ +V T +L TA T+ E + + + G +P
Sbjct: 14 VTLESGEIARQADGAVMVNMEGTVVLVTAVAKKTVAEGQDFFPLTVDYQEKSYAAGRIPG 73
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
R GR + R+I R LR + Q+I + D
Sbjct: 74 GYFRR------EGRPSENETLVSRLIDRPLRPLFPEGFFNEVQVIASVMSVNPDISPDIP 127
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+ GA A G + A G G +++ E T D+D
Sbjct: 128 AMIGASAA-------------IALSGVPFNGPIGAARVGYKNGAYLLNPSDKELQTSDLD 174
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
T+ G ++ V+ A +D + +++ +I ++
Sbjct: 175 LVVAGTE-GAVLMVESQANE--LPEDVMLGAVMYGHEQMQVVINAIRE 219
>gi|251772265|gb|EES52835.1| Polyribonucleotide nucleotidyltransferase [Leptospirillum
ferrodiazotrophum]
Length = 709
Score = 160 bits (404), Expect = 2e-37, Method: Composition-based stats.
Identities = 48/242 (19%), Positives = 86/242 (35%), Gaps = 18/242 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
+R GR ++R I++ + GS L G+T L+ ATL +E+ + H
Sbjct: 315 IRADGRSTTEIRPITIEVGILPRTHGSALFTRGETQSLSVATLGTSDDEQRIDSLEGESH 374
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y S G R+ G RAL V+ I +
Sbjct: 375 KRFMLHYNFPAFSVGEVKPMRGPGRREIGHGNL----AERALIPVLPSKDDFPYSIRLVS 430
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
D+++++G T A + G +A+ D ++ + + +G AI
Sbjct: 431 DILESNGSTSMATVCGGTLAMMDAGIPIKAPVAGIAMGLIKEGDRIAILSD--------- 481
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D TD G + VQ + + + L A+ ++ K+
Sbjct: 482 ILGIEDHLGDMDFKVTGTDIG-VTAVQMDIKIKGITLEIMKKALEQARVGRIHIMGKMKE 540
Query: 237 VI 238
+
Sbjct: 541 AL 542
Score = 96.1 bits (237), Expect = 3e-18, Method: Composition-based stats.
Identities = 35/234 (14%), Positives = 74/234 (31%), Gaps = 28/234 (11%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRN----TKHGWITAEYGMLPR 68
+ + +++ A+G+ ++ T ++ TA + V + G +P
Sbjct: 15 VRIETGRMARQADGAAVLWVEGTVIIATAVAAKTVKPGTDFLPLTVDYQERAYAAGKIPG 74
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
R G+ R R++ R LR + Q+I G T
Sbjct: 75 GFFKR------EGKPSEREILNSRLVDRPLRPLFPEGFYYDTQVIASVVSADRSGLTDVM 128
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+ A A + A+ G + G +++ D +D
Sbjct: 129 AVVAASTA-------------LTISDIPFDDPLGAVRVGYVDGQFVINPDIEAQERSSLD 175
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNEV 242
T I+ V+ + S++ F + A +I Q++ + ++
Sbjct: 176 LVVAGTAD-AIMMVE--GKADEVSEELFLEAIRTAHAACQPIIAAQRE-LQKKI 225
>gi|220934183|ref|YP_002513082.1| Polyribonucleotide nucleotidyltransferase [Thioalkalivibrio sp.
HL-EbGR7]
gi|254782744|sp|B8GP06|PNP_THISH RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|219995493|gb|ACL72095.1| Polyribonucleotide nucleotidyltransferase [Thioalkalivibrio sp.
HL-EbGR7]
Length = 693
Score = 160 bits (403), Expect = 2e-37, Method: Composition-based stats.
Identities = 42/243 (17%), Positives = 88/243 (36%), Gaps = 18/243 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWI----RNTKHG 57
R+ GR +R I++ V GS L G+T + ATL + +
Sbjct: 315 RIDGRDTRTVRPITVKTGVLPRTHGSALFTRGETQAIVVATLGTDRDAQLIEAIEGERRE 374
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P TG + R+ G + R +++V+ A + + +
Sbjct: 375 RFMLHYNFPPFCTGETGMVGSPKRREIGHGRL----AKRGVQAVMPGEAECPYVLRVVSE 430
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ G +AL D ++ + + +G A+ +
Sbjct: 431 ITESNGSSSMASVCGTSLALMDAGVPLKAPVAGIAMGLIKEGDAFAVISD---------I 481
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D + G + +Q + +++ L AK+ +++ V
Sbjct: 482 LGDEDHLGDMDFKVAGSKDG-VSALQMDIKIDGITREIMEKALAQAKEGRLHILEKMNAV 540
Query: 238 ISN 240
+S
Sbjct: 541 LSE 543
Score = 104 bits (258), Expect = 1e-20, Method: Composition-based stats.
Identities = 40/232 (17%), Positives = 80/232 (34%), Gaps = 27/232 (11%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGMLPR 68
++ +++ A G+ LV DT +L TA + + + T G +P
Sbjct: 15 VTFETGEIARQASGAVLVNMADTVVLVTAVGLKDVAQGRDFFPLTVNYQERTYAAGRIPG 74
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
R GR + R+I R +R + + Q+I + +
Sbjct: 75 GFFKR------EGRPTEKETLTSRLIDRPIRPLFPKGFMNEVQVIATVMSMNPEVDPDVP 128
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+ GA A KG + A G L G +++ E D+D
Sbjct: 129 AMLGASAA-------------LALSGLPFKGPIGAARVGYLNGAYVLNPSMSELKHSDLD 175
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
T+ ++ V+ A+ S++ + +++ IK+ ++ +
Sbjct: 176 LVVAGTEK-AVLMVESEAKL--LSEEVMLGAVMYGHEQMQAAIKVINELAAE 224
>gi|319406539|emb|CBI80181.1| polyribonucleotide nucleotidyltransferase [Bartonella sp. 1-1C]
Length = 733
Score = 160 bits (403), Expect = 2e-37, Method: Composition-based stats.
Identities = 44/243 (18%), Positives = 86/243 (35%), Gaps = 18/243 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR + +R I + GS L G+T L ATL +E+ +
Sbjct: 317 RIDGRNLSDVRSIQSEVGILPRTHGSALFTRGETQALVIATLGTGEDEQYIDSLTGMYKE 376
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + + R+ G + RA+ ++ I +
Sbjct: 377 TFLLHYNFPPFSVGEIGRIGSPGRREIGHGKL----AWRAIHPMLPTKESFPYTIRTVSE 432
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A + G +AL D + + + + +G A+ +
Sbjct: 433 ITESNGSSSMATVCGTSLALMDAGVPLANPVAGIAMGLIKEGEQFAVLSD---------I 483
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T++G I +Q + +++ L AKD ++
Sbjct: 484 LGDEDHLGDMDFKVAGTENG-ITSLQMDIKIDGITEEIMKIALAQAKDGRIHILNEMAKA 542
Query: 238 ISN 240
++
Sbjct: 543 LAR 545
Score = 102 bits (254), Expect = 4e-20, Method: Composition-based stats.
Identities = 36/228 (15%), Positives = 70/228 (30%), Gaps = 27/228 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPM----WIRNTKHGWITAEYGML 66
R + L +++ A+G+ L +G+T +L T + + + G +
Sbjct: 14 RPLILETGKIARQADGAILATYGETVVLATVVSAKIPKPDQNFFPLTVNYQEKNYAVGKI 73
Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
P R R I R+I R +R + Q+I+ +
Sbjct: 74 PGGYLKR------ENRPSESETLISRLIDRPIRPLFVDGYKNDTQVIVSVIQHDLENNPD 127
Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
AI + A G +AA G G I++ + E
Sbjct: 128 ILAIIASSAA-------------LTLSGIPFMGPIAAARIGYCNGQYILNPNIDEMPESK 174
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
+D T++ ++ V+ A +D + + +I
Sbjct: 175 LDLVVAGTEN-AVLMVESEAHE--LPEDVMLDAVMFGQKSFQPVINAI 219
>gi|126726062|ref|ZP_01741904.1| polynucleotide phosphorylase/polyadenylase [Rhodobacterales
bacterium HTCC2150]
gi|126705266|gb|EBA04357.1| polynucleotide phosphorylase/polyadenylase [Rhodobacterales
bacterium HTCC2150]
Length = 710
Score = 160 bits (403), Expect = 2e-37, Method: Composition-based stats.
Identities = 47/242 (19%), Positives = 92/242 (38%), Gaps = 17/242 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR + +R I + GS L G+T L TL +E++ + T
Sbjct: 318 RIDGRDTSTIRPIVSETGILPRTHGSALFTRGETQGLVVTTLGTGDDEQMIDALHGTYKS 377
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + R+ G + RAL++V+ + I + +
Sbjct: 378 NFMLHYNFPPYSVGEVGRFGFTGRREIGHGKL----AWRALQAVLPAATDFPYTIRLVSE 433
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ G +A+ D ++ + +L+ + + D+
Sbjct: 434 ITESNGSSSMASVCGGSLAMMDAGVPLKSAVAGVAMGLILEDDGS--------YAILSDI 485
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T++G I +Q + A + + L AKD ++
Sbjct: 486 LGDEDHLGDMDFKVAGTENG-ITSLQMDIKIAGITPEIMEKALAQAKDGRMHILGEMNKA 544
Query: 238 IS 239
+S
Sbjct: 545 LS 546
Score = 101 bits (250), Expect = 1e-19, Method: Composition-based stats.
Identities = 35/232 (15%), Positives = 65/232 (28%), Gaps = 33/232 (14%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT----KHGWITAEYGMLPR 68
++L V++ A+GS + G+T ++ T + +G G +P
Sbjct: 16 LTLETGKVARQADGSVIATLGETSVMANVTFAKAQKPGQDFFPLTVHYGEKYYAAGKIPG 75
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
R R + R+I R +R + +I
Sbjct: 76 GFFKR------EARPTEKETLTSRLIDRPIRPLFVDGFKNEVLLICTVLSHDLVNDPDIV 129
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDS----- 183
A+ A A G +AA G G +++ +
Sbjct: 130 AMIAASAA-------------LTISGAPFMGPIAAARVGFTEGEYVLNPSIDDMHKLRDN 176
Query: 184 -TIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
+D T ++ V+ A S+ + A D +I L
Sbjct: 177 PDQRLDLVVAGTKD-AVMMVESEAYE--LSEAEMLGAVRFAHDSFQPVIDLI 225
>gi|197117592|ref|YP_002138019.1| ribonuclease PH [Geobacter bemidjiensis Bem]
gi|197086952|gb|ACH38223.1| ribonuclease PH [Geobacter bemidjiensis Bem]
Length = 239
Score = 160 bits (403), Expect = 2e-37, Method: Composition-based stats.
Identities = 121/238 (50%), Positives = 165/238 (69%), Gaps = 2/238 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+R GR N +RE+ +TR K+AEGS LV+FGDT ++ AT+E +VP +++ GW+T
Sbjct: 2 IRREGRAANALREVKITRNYLKHAEGSVLVEFGDTKVICNATVEARVPSFLKGKGSGWVT 61
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEY MLPR+T R +RE+ G+ GR+ EIQR+IGR+LR+VVDL LG R I+IDCDVIQ
Sbjct: 62 AEYCMLPRATHTRNQRESAKGKLSGRTHEIQRLIGRSLRAVVDLELLGERSIVIDCDVIQ 121
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+ITGA+VAL D LQ++ + + L+ VAA+S G++ G P +DLDY
Sbjct: 122 ADGGTRTASITGAYVALADALQNLVNAGELEKS--PLREAVAAVSVGIVDGVPFLDLDYP 179
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
EDST +VD NFVMT S VEVQG+AE F+ D AM A ++ L ++Q++ +
Sbjct: 180 EDSTAEVDMNFVMTSSMRFVEVQGTAEAEPFTLDQMDAMRRHAMLGLSRLFEIQQEAL 237
>gi|83313216|ref|YP_423480.1| polynucleotide phosphorylase/polyadenylase [Magnetospirillum
magneticum AMB-1]
gi|123754041|sp|Q2VZQ4|PNP_MAGMM RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|82948057|dbj|BAE52921.1| Polyribonucleotide nucleotidyltransferase [Magnetospirillum
magneticum AMB-1]
Length = 720
Score = 160 bits (403), Expect = 2e-37, Method: Composition-based stats.
Identities = 45/242 (18%), Positives = 89/242 (36%), Gaps = 18/242 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
+R+ GR +R I + V A GS L G+T L ATL +E++ +
Sbjct: 315 VRIDGRDTKTVRAIEVEVGVLPRAHGSALFTRGETQALVVATLGTGQDEQIIDQLAGEYR 374
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P S G + + R+ G + RA+R + + +
Sbjct: 375 EHFMLHYNFPPYSVGEAGRMGSPGRREIGHGKL----AWRAMRPCLPAKESFPYTMRVVS 430
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
++ +++G + A++ G+ +AL D + + + +G A+
Sbjct: 431 EITESNGSSSMASVCGSSLALMDAGVPLPKPVAGIAMGLIKEGTDFAVLSD--------- 481
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T G + +Q + + +++ L AKD ++
Sbjct: 482 ILGDEDHLGDMDFKVAGTVDG-VTALQMDIKITSITEEIMKIALGQAKDGRIHILGEMNK 540
Query: 237 VI 238
+
Sbjct: 541 GL 542
Score = 110 bits (275), Expect = 2e-22, Method: Composition-based stats.
Identities = 41/235 (17%), Positives = 80/235 (34%), Gaps = 31/235 (13%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----HGWITAEYGML 66
R++ L V++ A+G+ +V +G+T +L T + I + G +
Sbjct: 16 RKLVLETGKVARQADGAVMVTYGETSVLCTVVGAKSQKPGIDFFPLTVNYQEKAFAAGKI 75
Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
P R GR + + R+I R +R + Q++ +
Sbjct: 76 PGGFFKR------EGRPSEKETLVSRLIDRPIRPLFADGFRNEVQVVCTVLSHDLENDPD 129
Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
AA+ G A G V A G + G +++ G+ +
Sbjct: 130 IAALVGTSAA-------------LTISGLPFMGPVGAARVGYVDGAYVLNPLVGDLPKSE 176
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR----IADLIKLQKDV 237
+D T G ++ V+ A++ S+D + I +I L ++
Sbjct: 177 LDLVVAGTVEG-VLMVESEAKQ--LSEDVMLGAVMFGHREFQAVIQAIIDLAEEC 228
>gi|87308273|ref|ZP_01090414.1| ribonuclease PH [Blastopirellula marina DSM 3645]
gi|87288830|gb|EAQ80723.1| ribonuclease PH [Blastopirellula marina DSM 3645]
Length = 237
Score = 160 bits (403), Expect = 2e-37, Method: Composition-based stats.
Identities = 111/240 (46%), Positives = 150/240 (62%), Gaps = 8/240 (3%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R GR+ NQ+RE+ + RR +K A GS L++ G T +L TA++E VP W++ + GWITA
Sbjct: 3 RHDGRKANQLRELKIKRRFTKNAAGSVLIQTGATTVLCTASVESSVPPWLKGSGKGWITA 62
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
EY MLP ST R S + GR+ EIQR+IGR+LR+V DL ALG + I +DCDV+ A
Sbjct: 63 EYNMLPGSTPTRK-----SRKVDGRTTEIQRLIGRSLRAVADLEALGEQMITVDCDVLDA 117
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
DGGTRTA+ITGA++AL D LQ + K L VAA+S G++ G +DLDY E
Sbjct: 118 DGGTRTASITGAFIALVDALQTIVLPDPKK---FPLVDSVAAVSVGLVNGAGALDLDYIE 174
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
D VD N VMT SG VEVQG+ E ATF+++ ++ L K + L + Q + +
Sbjct: 175 DVDAAVDMNVVMTGSGKFVEVQGAGEEATFTEEELMKLIQLGKHGVKVLTEAQAKALGKK 234
>gi|319408006|emb|CBI81660.1| polyribonucleotide nucleotidyltransferase [Bartonella
schoenbuchensis R1]
Length = 733
Score = 160 bits (403), Expect = 2e-37, Method: Composition-based stats.
Identities = 47/243 (19%), Positives = 87/243 (35%), Gaps = 18/243 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR + +R I + A GS L G+T L ATL +E+ + T
Sbjct: 317 RIDGRTLSTVRSIQSEVGILPRAHGSALFTRGETQALVIATLGTSEDEQYIDSLTGTYKE 376
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + + R+ G + RA+ ++ I +
Sbjct: 377 TFLLHYNFPPFSVGETGRISSPGRREIGHGKL----AWRAIHPMLPTKDSFPYTIRAVSE 432
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A + G +AL D + + + +G AI +
Sbjct: 433 ITESNGSSSMATVCGTSLALMDAGVPLARPVAGIAMGLIKEGERFAILSD---------I 483
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T +G I +Q + +++ L AKD ++
Sbjct: 484 LGDEDHLGDMDFKVAGTKNG-ITSLQMDIKIDGITEEIMKIALEQAKDGRIHILNEMSKA 542
Query: 238 ISN 240
+++
Sbjct: 543 LTS 545
Score = 108 bits (268), Expect = 1e-21, Method: Composition-based stats.
Identities = 34/228 (14%), Positives = 69/228 (30%), Gaps = 27/228 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----HGWITAEYGML 66
R + L +++ A+G+ L +G+T +L T + + T G +
Sbjct: 14 RPLILETGKIARQADGAVLATYGETIVLATVVSAKNPKPDQDFFPLTVNYQEKTYAVGKI 73
Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
P R R I R+I R +R + Q+I+ +
Sbjct: 74 PGGYFKR------ESRPSENETLISRLIDRPIRPLFVDGYKNDTQVIVSVIQHDLENNPD 127
Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
A+ + AL +A G G +++ E
Sbjct: 128 ILAMIASSAALTLSGIPFVG-------------PIAGARVGYCNGQYVLNPHIDEMPESK 174
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
+D T++ ++ V+ A+ +D + + +I
Sbjct: 175 LDLVVAGTEN-AVLMVESEAQE--LPEDVMLGAVIFGQKGFQPVIDAI 219
>gi|126730394|ref|ZP_01746205.1| Polyribonucleotide nucleotidyltransferase [Sagittula stellata E-37]
gi|126709127|gb|EBA08182.1| Polyribonucleotide nucleotidyltransferase [Sagittula stellata E-37]
Length = 713
Score = 160 bits (403), Expect = 2e-37, Method: Composition-based stats.
Identities = 48/243 (19%), Positives = 96/243 (39%), Gaps = 17/243 (6%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +Q+R I + GS L G+T L TL +E++ ++ T
Sbjct: 318 RIDGRALDQVRSIVSETGILPRTHGSALFTRGETQALVVTTLGTGDDEQMIDALQGTYKS 377
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + + R+ G + RAL++V+ + I + +
Sbjct: 378 NFLLHYNFPPYSVGEVGRVGSPGRREIGHGKL----AWRALQAVLPAATDFPYTIRLVSE 433
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ G +++ D ++ + VL+ + + D+
Sbjct: 434 ITESNGSSSMASVCGGSLSMMDAGVPLKSAVAGVAMGLVLEEDGS--------YGILTDI 485
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T++G I +Q + A + + L+ AK+ ++
Sbjct: 486 LGDEDHLGDMDFKVAGTENG-ITSLQMDIKVAGITPEIMKTALSQAKEGRMHILGEMSKA 544
Query: 238 ISN 240
IS
Sbjct: 545 ISE 547
Score = 101 bits (252), Expect = 8e-20, Method: Composition-based stats.
Identities = 32/232 (13%), Positives = 67/232 (28%), Gaps = 33/232 (14%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKHGWITAEYGMLPR 68
++L V++ A+G+ + G+T ++ T E + + G +P
Sbjct: 16 LTLETGKVARQADGTVIATLGETSVMANVTFAKTQKEGQDFFPLTVHYQEKYYAAGKIPG 75
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
R R + R+I R +R + ++
Sbjct: 76 GFFKR------EARPTEKETLTARLIDRPIRPLFVPGFKNEVLVMCTVLSHDLVNDPDIV 129
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDS----- 183
A+ A A G +A G G +++ +
Sbjct: 130 AMIAASAA-------------LTISGAPFMGPIAGARVGYEDGSYVLNPTVDDMHLLRDN 176
Query: 184 -TIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
+D T ++ V+ A ++D + A ++I +I L
Sbjct: 177 PDQRLDLVVAGTKD-AVMMVESEAYE--LTEDEMLGAVMFAHEQIQPVIDLI 225
>gi|86355771|ref|YP_467663.1| polynucleotide phosphorylase/polyadenylase [Rhizobium etli CFN 42]
gi|123738432|sp|Q2KE00|PNP_RHIEC RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|86279873|gb|ABC88936.1| polyribonucleotide nucleotidyltransferase protein [Rhizobium etli
CFN 42]
Length = 712
Score = 160 bits (403), Expect = 2e-37, Method: Composition-based stats.
Identities = 46/243 (18%), Positives = 87/243 (35%), Gaps = 18/243 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +R I + GS L G+T + ATL +E+ +
Sbjct: 316 RIDGRDLETVRPIVSEVGLLPRTHGSALFTRGETQAIVVATLGTGEDEQYVDSLTGMYKE 375
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + + R+ G + RA+R ++ + + + +
Sbjct: 376 RFLLHYNFPPFSVGETGRMGSPGRREIGHGKL----AWRAIRPMLPSAEQFPYTLRVVSE 431
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A + G +AL D + + +L+G A+ +
Sbjct: 432 ITESNGSSSMATVCGTSLALMDAGVPLAKPVAGIAMGLILEGDRFAVLSD---------I 482
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T G I +Q + A +++ L AK A ++
Sbjct: 483 LGDEDHLGDMDFKVAGTADG-ITSLQMDIKIAGITEEIMKVALGQAKGGRAHILGEMAKA 541
Query: 238 ISN 240
I+
Sbjct: 542 ITE 544
Score = 108 bits (268), Expect = 9e-22, Method: Composition-based stats.
Identities = 31/228 (13%), Positives = 67/228 (29%), Gaps = 27/228 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----HGWITAEYGML 66
R + L +++ A+G+ L +G+T +L T + + T G +
Sbjct: 14 RPLKLETGKIARQADGAVLATYGETVVLATVVSAKAPKPGQDFFPLTVNYQEKTYAAGKI 73
Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
P R GR + R+I R +R + Q+++ +
Sbjct: 74 PGGYFKR------EGRPSENETLVSRLIDRPIRPLFPEGYKNDTQVVVTVVQHDLENNPD 127
Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
++ + A G V G + G +++ E
Sbjct: 128 ILSMIASSAA-------------LTLSGVPFMGPVGGARVGYINGEYVLNPHLDEMDESS 174
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
+D T ++ V+ A+ +D + ++
Sbjct: 175 LDLVVAGTYD-AVLMVESEAKE--LPEDVMLGAVMFGHKGFQPVLDAI 219
>gi|325291527|ref|YP_004277391.1| polynucleotide phosphorylase [Agrobacterium sp. H13-3]
gi|325059380|gb|ADY63071.1| polynucleotide phosphorylase [Agrobacterium sp. H13-3]
Length = 715
Score = 160 bits (403), Expect = 2e-37, Method: Composition-based stats.
Identities = 44/243 (18%), Positives = 88/243 (36%), Gaps = 18/243 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR + +R I + GS L G+T + ATL +E+ +
Sbjct: 316 RIDGRDLSTVRPIVSEVGILPRTHGSALFTRGETQAIVVATLGTGEDEQYVDSLTGMYKE 375
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + + R+ G + RA+R ++ + + + +
Sbjct: 376 RFLLHYNFPPYSVGETGRMGSPGRREIGHGKL----AWRAIRPMLPTAEQFPYTLRVVSE 431
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A + G +AL D + + +L+G A+ +
Sbjct: 432 ITESNGSSSMATVCGTSLALMDAGVPLAKPVAGIAMGLILEGERFAVLSD---------I 482
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T G I +Q + A +++ L A+ ++ +
Sbjct: 483 LGDEDHLGDMDFKVAGTADG-ITSLQMDIKIAGITEEIMKIALEQAQGGRKHILGEMANA 541
Query: 238 ISN 240
I+
Sbjct: 542 ITE 544
Score = 109 bits (272), Expect = 4e-22, Method: Composition-based stats.
Identities = 33/228 (14%), Positives = 69/228 (30%), Gaps = 27/228 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----HGWITAEYGML 66
R + L V++ A+G+ + +G+T +L T + + T G +
Sbjct: 14 RPLKLETGKVARQADGAVIATYGETMVLATVVSAKSPKPGQDFFPLTVNYQEKTYAAGKI 73
Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
P R GR + + R+I R +R + Q+++ +
Sbjct: 74 PGGYFKR------EGRPSEKETLVSRLIDRPIRPLFPEGYKNDTQVVVTVIQHDLENDPD 127
Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
++ A A G V G + G +++ E
Sbjct: 128 VLSMVAASAA-------------LTLSGIPFMGPVGGARVGYINGEYVLNPHLDEMDESV 174
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
+D T ++ V+ A+ ++D + +I
Sbjct: 175 LDLVVAGTQD-AVLMVESEAKE--LNEDVMLGAVMFGHRGFQPVIDAI 219
>gi|34496921|ref|NP_901136.1| polynucleotide phosphorylase/polyadenylase [Chromobacterium
violaceum ATCC 12472]
gi|81656248|sp|Q7NY10|PNP_CHRVO RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|34102777|gb|AAQ59141.1| polyribonucleotide nucleotidyltransferase [Chromobacterium
violaceum ATCC 12472]
Length = 722
Score = 160 bits (403), Expect = 2e-37, Method: Composition-based stats.
Identities = 47/241 (19%), Positives = 93/241 (38%), Gaps = 18/241 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +R IS+ V GS L G+T L ATL +E++ +
Sbjct: 324 RIDGRDTRTVRPISIRNNVLPRTHGSALFTRGETQALVVATLGTKQDEQIIDALAGEYTE 383
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P STG + R+ G + RAL +V+ + + +
Sbjct: 384 RFMLHYNFPPYSTGEAGRMGPPKRREIGHGRL----AKRALVAVLPPEDEFGYSMRVVSE 439
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ G ++L ++ + +L+G+ A+ +
Sbjct: 440 ITESNGSSSMASVCGGCLSLLSAGVPLKAHVAGIAMGLILEGNRFAVLTD---------I 490
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T +G + +Q + +++ L AK+ ++ L K+
Sbjct: 491 LGDEDHLGDMDFKVAGTAAG-VTALQMDIKIQGITKEIMQVALEQAKEGRLHILGLMKEA 549
Query: 238 I 238
+
Sbjct: 550 V 550
Score = 69.9 bits (169), Expect = 3e-10, Method: Composition-based stats.
Identities = 42/243 (17%), Positives = 81/243 (33%), Gaps = 33/243 (13%)
Query: 5 GRQENQMREISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT----KHGWI 59
GRQ ++L +++ A GS +V DT ++ + + V +
Sbjct: 20 GRQT-----VTLETGEIARQASGSVVVSVDDTVVMVSVVGGKNVKPGQDFFPLTVDYLER 74
Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119
T G +P R G+Q + R+I R +R + QI+ +
Sbjct: 75 TYAAGKIPGGFFKR------EGKQSEKEVLTSRLIDRPIRPLFPEGFYHDVQIVATVLSL 128
Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179
+ + A+ GA A G + A G G I++
Sbjct: 129 NPEVDSDIPAMIGASAA-------------LAISGLPFAGPIGAARVGYANGEYILNPTK 175
Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
E T +D T ++ V+ A+ + + +++ IK + ++
Sbjct: 176 TELQTSQMDLVVAGTSR-AVLMVESEAKE--LPEAVMLGAVVFGHEQMQAAIKAINE-LA 231
Query: 240 NEV 242
+EV
Sbjct: 232 DEV 234
>gi|172057841|ref|YP_001814301.1| polyribonucleotide nucleotidyltransferase [Exiguobacterium
sibiricum 255-15]
gi|226702652|sp|B1YI57|PNP_EXIS2 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|171990362|gb|ACB61284.1| Polyribonucleotide nucleotidyltransferase [Exiguobacterium
sibiricum 255-15]
Length = 739
Score = 160 bits (403), Expect = 2e-37, Method: Composition-based stats.
Identities = 45/244 (18%), Positives = 87/244 (35%), Gaps = 18/244 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56
+R GR ++R + + A GS L G T +L+ AT + ++ +
Sbjct: 316 VRPDGRGLAEIRPLDSEIGLLPRAHGSGLFTRGQTQVLSVATLGVAGDAQIIDGLGLKAE 375
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P S G A R+ G RAL V+ I +
Sbjct: 376 KRFMHHYNFPPFSVGEARPMRAPGRREIGHGALG----ERALLPVLPSETDFPYTIRLVS 431
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V++++G + A+I G+ +A+ D ++ + + +G +I
Sbjct: 432 EVLESNGSSSQASICGSILAMMDAGVPLKAPVAGIAMGLIKEGENYSILTD--------- 482
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T G + +Q + ++ L A+ +++
Sbjct: 483 IQGMEDHLGDMDFKVAGTKDG-VTALQMDMKIGGITRQILEEALEQARLGRLHILEHMNS 541
Query: 237 VISN 240
VI+
Sbjct: 542 VIAE 545
Score = 114 bits (286), Expect = 7e-24, Method: Composition-based stats.
Identities = 44/232 (18%), Positives = 86/232 (37%), Gaps = 26/232 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATL---EEKVPMWIRNTKHGWITAEYGMLP 67
R +++ ++K A G+ L+++G+T +L T + + + + G +P
Sbjct: 15 RPLTIEIGQLAKQANGAALIRYGETAVLATVVASKQPKDLDFFPLTVNYEEKLYAAGKIP 74
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R GR G + R+I R +R + Q+ D
Sbjct: 75 GGFLKR------EGRPGENAILTSRLIDRPIRPLFPDGFRHDIQVATTVLSSDEDNSPEV 128
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
AA+ GA +A G +A ++ G + G I++ + S D+
Sbjct: 129 AAMIGASIA-------------LSISDIPFDGPIAGVTIGRVNGEFIINPTMSQASESDI 175
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
D T + V+ A+ S+ + L D I +LI Q+++++
Sbjct: 176 DLQVAGTKH-AVNMVEAGAKE--VSEQAMLEAILLGHDVIKELIAFQEEIVA 224
>gi|254465231|ref|ZP_05078642.1| ribonuclease PH [Rhodobacterales bacterium Y4I]
gi|206686139|gb|EDZ46621.1| ribonuclease PH [Rhodobacterales bacterium Y4I]
Length = 224
Score = 160 bits (403), Expect = 2e-37, Method: Composition-based stats.
Identities = 118/224 (52%), Positives = 159/224 (70%), Gaps = 2/224 (0%)
Query: 14 ISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGNR 73
+S+ +K+AEGSCL+K GDTH+L TAT+E++VP +I+ T GW+TAEYGMLPR+T R
Sbjct: 1 MSIETGFTKHAEGSCLIKVGDTHVLCTATIEDRVPPFIKGTGLGWVTAEYGMLPRATNTR 60
Query: 74 VKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGA 133
++REA SG+QGGR+ EIQR+IGRALR+ VD ALG RQI +DCDV+QADGGTR A+ITG
Sbjct: 61 MRREASSGKQGGRTVEIQRLIGRALRAGVDRVALGERQITVDCDVLQADGGTRCASITGG 120
Query: 134 WVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVM 193
WVAL + + + L V+A+SCG+ G P++DLDY EDS VD NF+M
Sbjct: 121 WVALRLAVNKLMKAGDVHID--PLLDPVSAVSCGIYAGQPVLDLDYPEDSEAGVDGNFIM 178
Query: 194 TDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
T SG ++EVQ SAE + FS+D +++LA +L ++QK
Sbjct: 179 TGSGKLIEVQMSAEGSVFSRDQMNELMDLAAKGTVELAEMQKAA 222
>gi|317061093|ref|ZP_07925578.1| polyribonucleotide nucleotidyltransferase [Fusobacterium sp. D12]
gi|313686769|gb|EFS23604.1| polyribonucleotide nucleotidyltransferase [Fusobacterium sp. D12]
Length = 707
Score = 160 bits (403), Expect = 2e-37, Method: Composition-based stats.
Identities = 50/243 (20%), Positives = 92/243 (37%), Gaps = 18/243 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR ++R + V GS L G+T L TATL +E++ + +
Sbjct: 324 RVDGRSTTEIRPLDAQINVLPIPHGSALFTRGETQSLATATLGTKEDEQLVDNLEKEYYK 383
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + A R+ G RALR V+ I + D
Sbjct: 384 KFYLHYNFPPYSVGETGRMGAPGRRELGHGSL----AERALRYVIPTEEEFPYTIRVVSD 439
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A+I G +AL +++ + + +G + ++
Sbjct: 440 ITESNGSSSQASICGGSLALMSAGVPIKEHVAGIAMGLIKEGEEFTVLTDIM-------- 491
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T SG I +Q + +++ L+ A ++++
Sbjct: 492 -GLEDHLGDMDFKVAGTKSG-ITALQMDIKITGITEEIMRIALSQAHVARQQILEVMNAA 549
Query: 238 ISN 240
IS+
Sbjct: 550 ISS 552
Score = 101 bits (251), Expect = 8e-20, Method: Composition-based stats.
Identities = 33/233 (14%), Positives = 75/233 (32%), Gaps = 27/233 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGML 66
R + ++ +++ + G+ ++++GDT LL+T + V + + G
Sbjct: 14 RSLKVSTGKIARQSCGAIMIQYGDTVLLSTVNRSKEARKGVDFFPLTVDYIEKFYAAGKF 73
Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
P R R + I R+I R +R + I+
Sbjct: 74 PGGFNKR------ESRPSTDATLIARLIDRPIRPMFPEGFTYDVHIVNTVFSFDEKNTPD 127
Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
I + +A G VA + G + G +++ +
Sbjct: 128 YLGIIASSLA-------------LSISDIPFLGPVAGVVVGYIDGEFVLNPTPEQLEKSL 174
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
+D + T + V+ A+ ++ + A + I + Q++ +
Sbjct: 175 LDLSVAGTKE-AVNMVEAGAKE--LDEETMLKAILFAHENIKKICAFQEEFVK 224
>gi|227824076|ref|YP_002828049.1| polynucleotide phosphorylase/polyadenylase [Sinorhizobium fredii
NGR234]
gi|254782732|sp|C3MC71|PNP_RHISN RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|227343078|gb|ACP27296.1| polyribonucleotide nucleotidyltransferase [Sinorhizobium fredii
NGR234]
Length = 717
Score = 160 bits (403), Expect = 2e-37, Method: Composition-based stats.
Identities = 44/243 (18%), Positives = 86/243 (35%), Gaps = 18/243 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +R I + GS L G+T + ATL +E+ +
Sbjct: 317 RIDGRDLETVRPIVSEVGLLPRTHGSALFTRGETQAIVVATLGTGEDEQYVDSLTGMYKE 376
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + + R+ G + RA+R ++ + + + +
Sbjct: 377 RFMLHYNFPPFSVGETGRMGSPGRREIGHGKL----AWRAIRPMLPEAEQFPYTLRVVSE 432
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A + G +AL D + + + + A+ +
Sbjct: 433 ITESNGSSSMATVCGTSLALMDAGVPLAKPVAGIAMGLIKEDERFAVLSD---------I 483
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T++G I +Q + +++ LN AK ++
Sbjct: 484 LGDEDHLGDMDFKVAGTEAG-ITSLQMDIKIEGITEEIMGIALNQAKGGRLHILGEMAKA 542
Query: 238 ISN 240
IS
Sbjct: 543 ISE 545
Score = 108 bits (269), Expect = 8e-22, Method: Composition-based stats.
Identities = 33/228 (14%), Positives = 68/228 (29%), Gaps = 27/228 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----HGWITAEYGML 66
R + L +++ A+G+ L +G+T +L T + + T G +
Sbjct: 14 RPLKLETGKIARQADGAVLATYGETVVLATVVSAKAPKPGQDFFPLTVNYQEKTYAAGKI 73
Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
P R GR + R+I R +R + Q+I+ +
Sbjct: 74 PGGYFKR------EGRPSENETLVSRLIDRPIRPLFPDGYKNDTQVIVTVMQHDLENNPD 127
Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
++ A A G + G + G +++ E
Sbjct: 128 VVSMVAASAA-------------LTLSGIPFMGPIGGARVGYINGEYVLNPHLDEMDESS 174
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
+D T ++ V+ A+ +D + + +I
Sbjct: 175 LDLVVAGTQE-AVLMVESEAKE--LPEDVMLGAVVFGQQGFQPVIDAI 219
>gi|325290671|ref|YP_004266852.1| RNAse PH [Syntrophobotulus glycolicus DSM 8271]
gi|324966072|gb|ADY56851.1| RNAse PH [Syntrophobotulus glycolicus DSM 8271]
Length = 246
Score = 160 bits (403), Expect = 2e-37, Method: Composition-based stats.
Identities = 111/239 (46%), Positives = 161/239 (67%), Gaps = 2/239 (0%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R++ R ++R + +TRR ++ EGS L++ G T +L TA++E++VP +++ GWITA
Sbjct: 3 RIAERNNQELRPVRITRRYTEIPEGSVLIEIGKTMVLCTASIEDRVPPFLKGAGKGWITA 62
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
EY MLPR+TG R +RE+ G+ GR+ EIQR+IGRALRSVVDLS LG + I +DCDV+QA
Sbjct: 63 EYSMLPRATGVRNQRESSKGKLSGRTMEIQRLIGRALRSVVDLSKLGEKTIWLDCDVLQA 122
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
DGGTRTAAITGA+VALHD + + + + +AA+S G + G ++DL Y E
Sbjct: 123 DGGTRTAAITGAYVALHDAVSFL--LGAGLLKTNPITDSLAAVSVGKVRGEYLLDLAYEE 180
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
DS +VD N VMT SG ++EVQG+AE+ F + +L+LA++ I L+ Q+ +
Sbjct: 181 DSKAEVDMNVVMTGSGKLIEVQGTAEKEPFDRKELDELLDLAENGIRTLMGYQRQALEE 239
>gi|49475022|ref|YP_033063.1| polynucleotide phosphorylase/polyadenylase [Bartonella henselae
str. Houston-1]
gi|81648398|sp|Q6G5F8|PNP_BARHE RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|49237827|emb|CAF27022.1| Polyribonucleotide nucleotidyltransferase [Bartonella henselae str.
Houston-1]
Length = 733
Score = 160 bits (403), Expect = 2e-37, Method: Composition-based stats.
Identities = 42/243 (17%), Positives = 84/243 (34%), Gaps = 18/243 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR + +R I + GS L G+T + ATL +E+ +
Sbjct: 317 RIDGRDLSTVRPIQSEVGILPRTHGSALFTRGETQAIVVATLGTGEDEQYIDSLTGMYKE 376
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + + R+ G + RA+ ++ I +
Sbjct: 377 TFLLHYNFPPFSVGETGRLGSPGRREIGHGKL----AWRAIHPMLPSKESFPYTIRAVSE 432
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A + G +AL D + + + +G A+ +
Sbjct: 433 ITESNGSSSMATVCGTSLALMDAGVPLARPVAGIAMGLIKEGERFAVLSD---------I 483
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T +G I +Q + +++ L AK ++
Sbjct: 484 LGDEDHLGDMDFKVAGTANG-ITALQMDIKIDGITEEIMKIALEQAKGGRIHILNEMAKA 542
Query: 238 ISN 240
+++
Sbjct: 543 LTS 545
Score = 110 bits (275), Expect = 2e-22, Method: Composition-based stats.
Identities = 33/228 (14%), Positives = 71/228 (31%), Gaps = 27/228 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----HGWITAEYGML 66
R ++L +++ A+G+ + +G+T +L T + + + G +
Sbjct: 14 RPLTLETGKIARQADGAVIATYGETIVLATVVSAKSPKPDQDFFPLTVNYQEKSYAVGRI 73
Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
P R R I R+I R +R + Q+I+ +
Sbjct: 74 PGGYLKR------ESRPSENETLISRLIDRPIRPLFADGYKNDTQVIVSVIQHDLENNPD 127
Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
A+ + A G +A G G I++ E S
Sbjct: 128 ILAMIASSAA-------------LTLSGVPFMGPIAGARVGYCNGQYILNPHIDEMSESK 174
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
+D T++ ++ V+ A+ +D + + ++
Sbjct: 175 LDLVVAGTEN-AVLMVESEAQE--LPEDIMLGAVMFGHKGLQPILDAI 219
>gi|46199080|ref|YP_004747.1| polynucleotide phosphorylase/polyadenylase [Thermus thermophilus
HB27]
gi|75424073|sp|Q9ZAE1|PNP_THETH RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|81405907|sp|Q72JJ8|PNP_THET2 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|4138650|emb|CAB06341.1| polynucleotide phosphorylase [Thermus thermophilus]
gi|46196704|gb|AAS81120.1| polynucleotide phosphorylase [Thermus thermophilus HB27]
Length = 713
Score = 160 bits (403), Expect = 2e-37, Method: Composition-based stats.
Identities = 51/241 (21%), Positives = 92/241 (38%), Gaps = 18/241 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R GR +R I + V A GS + G+T +L T TL +E++ + +
Sbjct: 327 RADGRGPKDLRPIWIEVDVLPRAHGSAVFTRGETQVLGTVTLGTGRDEQILDDLGIDETE 386
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P STG + VS R+ G RAL++V+ I + D
Sbjct: 387 KFLVHYNFPPFSTGEVRRLRGVSRREVGHGNL----AKRALKAVMPKEEDFPYTIRVVGD 442
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
V++++G + A + +AL D + + V + + A I +
Sbjct: 443 VLESNGSSSMATVCAGCLALMDAGVPIRAPVAGVAMGLVWEENRAVILTD---------I 493
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED+ D+D T G + +Q + ++ L A++ ++ L + V
Sbjct: 494 LGLEDALGDMDFKVAGTRKG-VTALQMDNKVGGLPREVLKEALLQAREARLKILDLMETV 552
Query: 238 I 238
+
Sbjct: 553 L 553
Score = 114 bits (284), Expect = 1e-23, Method: Composition-based stats.
Identities = 44/235 (18%), Positives = 81/235 (34%), Gaps = 27/235 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEE---KVPMWIRNTKHGWITAEYGMLP 67
R + L +K A GS LV++ DT +L TA E + + G +P
Sbjct: 20 RPLVLETGKYAKQASGSVLVRYADTVVLATAQASETPVEADFLPLTVEFEERHYAVGKIP 79
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
S R GR G ++ RM R +R + QII+
Sbjct: 80 GSFMRR------EGRPGEKAILSARMTDRPIRPLFPKGFRHEVQIIVTVLSADQKNPPDI 133
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
+ + +G +AA+ G++ G +++ E +
Sbjct: 134 LG-------------PIAASAALMLSDIPWEGPIAAVRVGLIGGSFVLNPTLQELEESQL 180
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNEV 242
D + I+ V+ AE ++ L A + +++LQ + ++ E+
Sbjct: 181 DLVVAGSKE-AILMVE--AEAGEVDEETLVQALEFAHKEMQPILELQ-EAMAREL 231
>gi|218439976|ref|YP_002378305.1| ribonuclease PH [Cyanothece sp. PCC 7424]
gi|226736901|sp|B7KB81|RNPH_CYAP7 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|218172704|gb|ACK71437.1| ribonuclease PH [Cyanothece sp. PCC 7424]
Length = 242
Score = 160 bits (403), Expect = 2e-37, Method: Composition-based stats.
Identities = 101/239 (42%), Positives = 150/239 (62%), Gaps = 4/239 (1%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R RQ +Q+R I S++ GS L G+T +L TAT++ VP ++ N+ GW+TA
Sbjct: 5 RPDSRQPDQLRPILFETNYSRFRVGSVLAHCGETRVLCTATIQPNVPKFLLNSGKGWLTA 64
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
EY MLP +T R R + GR+QEIQR+IGR+LR+ +D LG R IIID DV+QA
Sbjct: 65 EYRMLPGATPERQSR--ELMQLSGRTQEIQRLIGRSLRACLDFERLGERTIIIDTDVLQA 122
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
D GTRT AITG ++AL ++ + + + LK VAA+S G++ G P +DL+Y E
Sbjct: 123 DAGTRTTAITGGYIALGLAIKKLLEVGELQES--PLKLPVAAVSVGLIEGEPFLDLNYAE 180
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
D+ +VD N VMT + ++EVQG+AE +FS+ +L+LA+ I +L+ Q++ I++
Sbjct: 181 DTAAEVDFNVVMTGNLDLIEVQGTAESGSFSRLQLNQLLDLAQTGIQELLVAQQNAINS 239
>gi|253997787|ref|YP_003049850.1| polynucleotide phosphorylase/polyadenylase [Methylovorus sp.
SIP3-4]
gi|313199851|ref|YP_004038509.1| polyribonucleotide nucleotidyltransferase [Methylovorus sp. MP688]
gi|253984466|gb|ACT49323.1| Polyribonucleotide nucleotidyltransferase [Methylovorus sp. SIP3-4]
gi|312439167|gb|ADQ83273.1| Polyribonucleotide nucleotidyltransferase [Methylovorus sp. MP688]
Length = 707
Score = 159 bits (402), Expect = 2e-37, Method: Composition-based stats.
Identities = 49/243 (20%), Positives = 95/243 (39%), Gaps = 18/243 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +R I++ V GS L G+T L ATL +E++ ++
Sbjct: 315 RIDGRNTRTVRPITIRTGVLPRTHGSALFTRGETQALVVATLGTGRDEQIIDALQGEYTD 374
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y M P +TG + R+ G R+ RAL + + I + +
Sbjct: 375 RFMLHYNMPPYATGETGRVGTPKRREIG----HGRLAKRALLAALPSQEEFGYTIRVVSE 430
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ G +AL D ++ + + +G+ A+ +
Sbjct: 431 ITESNGSSSMASVCGGCLALMDAGVPVKTHVAGIAMGLIKEGNRVAVLTD---------I 481
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D ++ G I +Q + + + A L AK+ ++ L K+
Sbjct: 482 LGDEDHLGDMDFKVAGSEDG-ITALQMDIKITGITAEIMQAALAQAKEGRLHILGLMKEA 540
Query: 238 ISN 240
+
Sbjct: 541 MGE 543
Score = 106 bits (265), Expect = 2e-21, Method: Composition-based stats.
Identities = 40/233 (17%), Positives = 83/233 (35%), Gaps = 27/233 (11%)
Query: 13 EISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT----KHGWITAEYGMLP 67
E++L +++ A+G+ +V +GDT +L T + V + T G +P
Sbjct: 14 ELTLETGEIARQADGAVMVSYGDTVVLVTVVGKTDVKPGQDFFPLTVDYQERTYAAGKIP 73
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R GR + R+I R LR + + QI+ ++ +
Sbjct: 74 GGFFKR------EGRPSEKETLTSRLIDRPLRPLFPEAFYNEVQIVATVMSSDSEIDSDI 127
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
AI GA A G + A G + G +++ + ++
Sbjct: 128 PAIIGASAA-------------LAISGIPFYGPIGAARVGYINGEYVLNPTATQLKDTEL 174
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
D T + ++ V+ A+ +D + +++ +I L ++ +
Sbjct: 175 DLVVAATST-AVLMVESEAKE--LPEDVMLGSVVYGHEQMQAVINLINEIAAE 224
>gi|152979779|ref|YP_001353149.1| polynucleotide phosphorylase/polyadenylase [Janthinobacterium sp.
Marseille]
gi|187610276|sp|A6SY02|PNP_JANMA RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|151279856|gb|ABR88266.1| polyribonucleotide nucleotidyltransferase [Janthinobacterium sp.
Marseille]
Length = 711
Score = 159 bits (402), Expect = 2e-37, Method: Composition-based stats.
Identities = 47/241 (19%), Positives = 90/241 (37%), Gaps = 18/241 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +R I++ V GS L G+T L ATL +E+ +
Sbjct: 320 RIDGRDTRTVRPITIRTGVLPRTHGSALFTRGETQALVIATLGTARDEQKIDALMGEYSD 379
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y M P +TG + R+ G + RAL + + S + + +
Sbjct: 380 RFMLHYNMPPFATGETGRVGTPKRREIGHGRL----AKRALVAALPAPEDFSYSVRLVSE 435
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ G +AL D M+ + + +G A+ +
Sbjct: 436 ITESNGSSSMASVCGGCLALMDAGVPMQSHVAGIAMGLIKEGSKFAVLTD---------I 486
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T +G I +Q + +++ L AK+ ++ +
Sbjct: 487 LGDEDHLGDMDFKVAGTANG-ITALQMDIKIQGITKEIMQVALAQAKEGRVHILGEMEKA 545
Query: 238 I 238
+
Sbjct: 546 V 546
Score = 103 bits (257), Expect = 2e-20, Method: Composition-based stats.
Identities = 42/232 (18%), Positives = 83/232 (35%), Gaps = 27/232 (11%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT----KHGWITAEYGMLPR 68
++L +++ A G+ LV DT +L T ++ + T G +P
Sbjct: 16 VTLETGEIARQASGAVLVSIEDTVVLATVVAKKDAKPGQDFFPLTVDYVEKTYAAGRIPG 75
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
R GR + R+I R +R + L QIII + + A
Sbjct: 76 GFFKR------EGRPSEKETLTSRLIDRPIRPLFPEGYLNEVQIIIHVMSVNPEIDPDIA 129
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+ GA AL V A G + G +++ + + D+D
Sbjct: 130 AMIGASAALSVAGIPFAG-------------PVGAARVGYIDGQYVLNPTTSQLAKSDLD 176
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
T+ ++ V+ A++ S++ + +++ +I D++ +
Sbjct: 177 LVVAGTEI-AVLMVESEAKQ--LSEEVMLGAVVFGHEQMKAVIDAIHDLVRD 225
>gi|171058181|ref|YP_001790530.1| polynucleotide phosphorylase/polyadenylase [Leptothrix cholodnii
SP-6]
gi|226702660|sp|B1Y823|PNP_LEPCP RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|170775626|gb|ACB33765.1| Polyribonucleotide nucleotidyltransferase [Leptothrix cholodnii
SP-6]
Length = 767
Score = 159 bits (402), Expect = 3e-37, Method: Composition-based stats.
Identities = 44/242 (18%), Positives = 88/242 (36%), Gaps = 18/242 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +R I + V GS L G+T L ATL + + +
Sbjct: 317 RIDGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQALVVATLGTDQDSQRIDALAGDFRD 376
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y M P +TG + R+ G + RAL ++ I + +
Sbjct: 377 SFLFHYNMPPFATGEVGRMGTTKRRETGHGRL----AKRALVPLLPPKDEFGYTIRVVSE 432
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ G +A+ D M+ + + +G+ A+ +
Sbjct: 433 ITESNGSSSMASVCGGCLAMMDAGVPMKAHVAGIAMGLIKEGNRFAVLTD---------I 483
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T +G + +Q + +++ L AK+ ++ +
Sbjct: 484 LGDEDHLGDMDFKVAGTTAG-VTALQMDIKIQGITKEIMQVALAQAKEARLHILGKMVEA 542
Query: 238 IS 239
+
Sbjct: 543 MG 544
Score = 91.4 bits (225), Expect = 9e-17, Method: Composition-based stats.
Identities = 33/232 (14%), Positives = 76/232 (32%), Gaps = 27/232 (11%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT----KHGWITAEYGMLPR 68
++L +S+ A G+ +V DT +L T + + T G +P
Sbjct: 18 VTLETGEISRQAGGAVIVNIDDTVVLATVVGAKNAKPGQDFFPLTVDYIEKTYAAGKIPG 77
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
S R + R+I R LR + +++ + + A
Sbjct: 78 SFFKR------EAKPSELEVLTSRLIDRPLRPLFPEGFYNEVHVVVHVLSLNPEASADIA 131
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+ G+ A G V A G + G +++ + + +D
Sbjct: 132 ALIGSSAA-------------LAISGIPFNGPVGAARVGYVNGEYVLNPGPTQLKSSKMD 178
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
T++ ++ V+ +E +++ + ++ I +++ +
Sbjct: 179 LVVAGTEA-AVLMVE--SEADQLTEEVMLGAVVYGHEQAKVAIAAINELVRD 227
>gi|269925889|ref|YP_003322512.1| ribonuclease PH [Thermobaculum terrenum ATCC BAA-798]
gi|269789549|gb|ACZ41690.1| ribonuclease PH [Thermobaculum terrenum ATCC BAA-798]
Length = 245
Score = 159 bits (402), Expect = 3e-37, Method: Composition-based stats.
Identities = 105/240 (43%), Positives = 156/240 (65%), Gaps = 5/240 (2%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+R+ GR+ N++R S+ + GS +++ G T +L A+++E VP ++ T GW+T
Sbjct: 6 IRVDGRKPNELRPHSIEIYPLAFPPGSAIIQCGVTKVLCAASIQEGVPKFLEGTGQGWLT 65
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEY MLP ST R RE+ +GR GR+QEIQR+IGR+LR+ V L +G II+DCDV+Q
Sbjct: 66 AEYSMLPASTQTRTPRESHTGRLQGRTQEIQRLIGRSLRAAVKLDQIGEITIIVDCDVLQ 125
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+ITG +VA L+ + + + + VAA+S G++ G P++DL+Y
Sbjct: 126 ADGGTRTASITGGYVATVLALRKIFPDTYRDLV-----SPVAAVSVGIVNGTPMLDLNYA 180
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
EDST D D N V G +E+Q +AER +FS++ AML+LA IA+L++ Q V+S+
Sbjct: 181 EDSTADTDLNVVKNHLGDYIEIQATAERVSFSREELDAMLSLADKGIAELMESQSKVLSS 240
>gi|15604364|ref|NP_220880.1| polynucleotide phosphorylase/polyadenylase [Rickettsia prowazekii
str. Madrid E]
gi|8928251|sp|Q9ZD43|PNP_RICPR RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|3861056|emb|CAA14956.1| POLYRIBONUCLEOTIDE NUCLEOTIDYLTRANSFERASE (pnp) [Rickettsia
prowazekii]
Length = 745
Score = 159 bits (402), Expect = 3e-37, Method: Composition-based stats.
Identities = 46/244 (18%), Positives = 89/244 (36%), Gaps = 18/244 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56
+R+ GR +R+I+ + A GS L G+T L + T L+E++ +
Sbjct: 315 IRIDGRSTTDIRQIACEVGLLPSAHGSALFTRGETQSLVSTTFGTSLDEQIVDSLEGEYK 374
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P S + +A S R+ G + RA+ ++ I +
Sbjct: 375 ERFMLNYIFPPYSVNEAMPMKAPSRREVGHGKL----AWRAINPILPNKVQFPYSIRVVA 430
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+ +++G + A + G+ +AL ++ + V + + A+
Sbjct: 431 ETTESNGSSSMATVCGSSLALMHAGVPIKAPVAGIAMGLVKESNKFAVLSD--------- 481
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T SG I +Q + + L A+ +++
Sbjct: 482 IIGDEDYFGDMDFKVAGTSSG-ITALQMDIKISGIDFKIIQIALEQARLGRLHILEQMNK 540
Query: 237 VISN 240
VIS
Sbjct: 541 VISK 544
Score = 89.9 bits (221), Expect = 3e-16, Method: Composition-based stats.
Identities = 39/232 (16%), Positives = 78/232 (33%), Gaps = 27/232 (11%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPM----WIRNTKHGWITAEYGMLPR 68
+ ++ +++ A + VK G++ LL T + KV + + + G +P
Sbjct: 16 LEISTGKIARQANAAVTVKMGNSILLCTCVVANKVKDGIGFFPLTINYREMAYSAGKIPG 75
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
R G+ R + R+I R +R + + + +
Sbjct: 76 GFFKR------EGKASDREILVSRLIDRPIRPLFHQAFMHETHVTCSVLSYDPATPVDIL 129
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
AI GA A VAA G++ G +++ T +D
Sbjct: 130 AIIGASAA-------------LSISPAPYLEIVAASKVGLINGEFVLNPTLELLKTSQLD 176
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
T+ ++ V+ +E S+D + + +IKL K++
Sbjct: 177 LVVAGTED-SVMMVE--SEAHLLSEDKMLEAVKFGFESFQTVIKLIKELAKE 225
>gi|22124017|ref|NP_667440.1| ribonuclease PH [Yersinia pestis KIM 10]
gi|45439910|ref|NP_991449.1| ribonuclease PH [Yersinia pestis biovar Microtus str. 91001]
gi|51594399|ref|YP_068590.1| ribonuclease PH [Yersinia pseudotuberculosis IP 32953]
gi|108809489|ref|YP_653405.1| ribonuclease PH [Yersinia pestis Antiqua]
gi|108813966|ref|YP_649733.1| ribonuclease PH [Yersinia pestis Nepal516]
gi|145601101|ref|YP_001165177.1| ribonuclease PH [Yersinia pestis Pestoides F]
gi|150260892|ref|ZP_01917620.1| ribonuclease PH [Yersinia pestis CA88-4125]
gi|153946899|ref|YP_001399057.1| ribonuclease PH [Yersinia pseudotuberculosis IP 31758]
gi|162421592|ref|YP_001604689.1| ribonuclease PH [Yersinia pestis Angola]
gi|165926075|ref|ZP_02221907.1| ribonuclease PH [Yersinia pestis biovar Orientalis str. F1991016]
gi|165936276|ref|ZP_02224845.1| ribonuclease PH [Yersinia pestis biovar Orientalis str. IP275]
gi|166011471|ref|ZP_02232369.1| ribonuclease PH [Yersinia pestis biovar Antiqua str. E1979001]
gi|166213648|ref|ZP_02239683.1| ribonuclease PH [Yersinia pestis biovar Antiqua str. B42003004]
gi|167402127|ref|ZP_02307604.1| ribonuclease PH [Yersinia pestis biovar Antiqua str. UG05-0454]
gi|167419312|ref|ZP_02311065.1| ribonuclease PH [Yersinia pestis biovar Orientalis str. MG05-1020]
gi|167426642|ref|ZP_02318395.1| ribonuclease PH [Yersinia pestis biovar Mediaevalis str. K1973002]
gi|167468220|ref|ZP_02332924.1| ribonuclease PH [Yersinia pestis FV-1]
gi|170026367|ref|YP_001722872.1| ribonuclease PH [Yersinia pseudotuberculosis YPIII]
gi|186893387|ref|YP_001870499.1| ribonuclease PH [Yersinia pseudotuberculosis PB1/+]
gi|218927265|ref|YP_002345140.1| ribonuclease PH [Yersinia pestis CO92]
gi|229836156|ref|ZP_04456324.1| ribonuclease PH [Yersinia pestis Pestoides A]
gi|229839893|ref|ZP_04460052.1| ribonuclease PH [Yersinia pestis biovar Orientalis str. PEXU2]
gi|229841975|ref|ZP_04462130.1| ribonuclease PH [Yersinia pestis biovar Orientalis str. India 195]
gi|229904496|ref|ZP_04519607.1| ribonuclease PH [Yersinia pestis Nepal516]
gi|270488496|ref|ZP_06205570.1| tRNA nucleotidyltransferase [Yersinia pestis KIM D27]
gi|294502151|ref|YP_003566213.1| ribonuclease PH [Yersinia pestis Z176003]
gi|21759404|sp|Q8ZJP8|RNPH_YERPE RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|61215882|sp|Q66GE1|RNPH_YERPS RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|122382629|sp|Q1C262|RNPH_YERPA RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|122384026|sp|Q1CCZ7|RNPH_YERPN RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|166228325|sp|A4TSE2|RNPH_YERPP RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|166991087|sp|A7FCS9|RNPH_YERP3 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|226736955|sp|B2JYM8|RNPH_YERPB RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|226736956|sp|A9R668|RNPH_YERPG RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|226736957|sp|B1JQX8|RNPH_YERPY RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|21956760|gb|AAM83691.1|AE013610_3 RNase PH [Yersinia pestis KIM 10]
gi|45434765|gb|AAS60326.1| ribonuclease PH [Yersinia pestis biovar Microtus str. 91001]
gi|51587681|emb|CAH19281.1| ribonuclease PH [Yersinia pseudotuberculosis IP 32953]
gi|108777614|gb|ABG20133.1| RNAse PH [Yersinia pestis Nepal516]
gi|108781402|gb|ABG15460.1| RNAse PH [Yersinia pestis Antiqua]
gi|115345876|emb|CAL18734.1| ribonuclease PH [Yersinia pestis CO92]
gi|145212797|gb|ABP42204.1| RNAse PH [Yersinia pestis Pestoides F]
gi|149290300|gb|EDM40377.1| ribonuclease PH [Yersinia pestis CA88-4125]
gi|152958394|gb|ABS45855.1| ribonuclease PH [Yersinia pseudotuberculosis IP 31758]
gi|162354407|gb|ABX88355.1| ribonuclease PH [Yersinia pestis Angola]
gi|165915890|gb|EDR34498.1| ribonuclease PH [Yersinia pestis biovar Orientalis str. IP275]
gi|165921935|gb|EDR39112.1| ribonuclease PH [Yersinia pestis biovar Orientalis str. F1991016]
gi|165989617|gb|EDR41918.1| ribonuclease PH [Yersinia pestis biovar Antiqua str. E1979001]
gi|166205050|gb|EDR49530.1| ribonuclease PH [Yersinia pestis biovar Antiqua str. B42003004]
gi|166963306|gb|EDR59327.1| ribonuclease PH [Yersinia pestis biovar Orientalis str. MG05-1020]
gi|167048502|gb|EDR59910.1| ribonuclease PH [Yersinia pestis biovar Antiqua str. UG05-0454]
gi|167054331|gb|EDR64148.1| ribonuclease PH [Yersinia pestis biovar Mediaevalis str. K1973002]
gi|169752901|gb|ACA70419.1| ribonuclease PH [Yersinia pseudotuberculosis YPIII]
gi|186696413|gb|ACC87042.1| ribonuclease PH [Yersinia pseudotuberculosis PB1/+]
gi|229678614|gb|EEO74719.1| ribonuclease PH [Yersinia pestis Nepal516]
gi|229690285|gb|EEO82339.1| ribonuclease PH [Yersinia pestis biovar Orientalis str. India 195]
gi|229696259|gb|EEO86306.1| ribonuclease PH [Yersinia pestis biovar Orientalis str. PEXU2]
gi|229706604|gb|EEO92610.1| ribonuclease PH [Yersinia pestis Pestoides A]
gi|262360230|gb|ACY56951.1| ribonuclease PH [Yersinia pestis D106004]
gi|262364176|gb|ACY60733.1| ribonuclease PH [Yersinia pestis D182038]
gi|270337000|gb|EFA47777.1| tRNA nucleotidyltransferase [Yersinia pestis KIM D27]
gi|294352610|gb|ADE62951.1| ribonuclease PH [Yersinia pestis Z176003]
gi|320013398|gb|ADV96969.1| ribonuclease PH [Yersinia pestis biovar Medievalis str. Harbin 35]
Length = 238
Score = 159 bits (402), Expect = 3e-37, Method: Composition-based stats.
Identities = 119/240 (49%), Positives = 162/240 (67%), Gaps = 2/240 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR + R Q+R ++LTR +K+AEGS LV+FGDT +L TAT+EE VP +++ GWIT
Sbjct: 1 MRPADRAAQQVRPLTLTRNYTKHAEGSVLVEFGDTKVLCTATVEEGVPRFLKGQGQGWIT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPRST +R REA G+QGGR+ EIQR+I R+LR+ VDL LG I +DCDV+Q
Sbjct: 61 AEYGMLPRSTHSRNAREAAKGKQGGRTLEIQRLIARSLRAAVDLKKLGEFTITLDCDVLQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+I+GA VAL D L + + +KG VAA+S G++ G + DL+Y
Sbjct: 121 ADGGTRTASISGACVALADALNKLVAS--GKLKANPMKGLVAAVSVGIVKGEALCDLEYV 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
EDS + D N VM + G ++EVQG+AE FS + A+L+LA+ I + + QK + +
Sbjct: 179 EDSAAETDMNVVMMEDGRMIEVQGTAEGEPFSHEELLALLDLARGGIETIFQAQKAALES 238
>gi|209883656|ref|YP_002287513.1| polyribonucleotide nucleotidyltransferase [Oligotropha
carboxidovorans OM5]
gi|226702670|sp|B6JCR8|PNP_OLICO RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|209871852|gb|ACI91648.1| polyribonucleotide nucleotidyltransferase [Oligotropha
carboxidovorans OM5]
Length = 714
Score = 159 bits (402), Expect = 3e-37, Method: Composition-based stats.
Identities = 47/241 (19%), Positives = 89/241 (36%), Gaps = 18/241 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +R I V A GS L G+T L TL +E+ + T
Sbjct: 316 RIDGRDLKTVRPIVAEVGVLPRAHGSALFTRGETQALVVTTLGTGEDEQYIDSLAGTYKE 375
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + + R+ G + RA+ V+ + + +
Sbjct: 376 TFLLHYNFPPFSVGETGRIGSPGRREIGHGKL----AWRAIHPVLPAHHEFPYTLRVVSE 431
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A + G+ +AL D ++ + + +L+G A+ +
Sbjct: 432 ITESNGSSSMATVCGSSLALMDAGVPLKRPTAGIAMGLILEGDRFAVLSD---------I 482
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T+ G + +Q + A +++ L AKD ++
Sbjct: 483 LGDEDHLGDMDFKVAGTEKG-VTSLQMDIKIAGITEEIMKVALTQAKDGRMHILGEMAKA 541
Query: 238 I 238
+
Sbjct: 542 L 542
Score = 106 bits (264), Expect = 3e-21, Method: Composition-based stats.
Identities = 35/235 (14%), Positives = 76/235 (32%), Gaps = 28/235 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTKHGWITAEYGML 66
R + L V++ A+G+ + +G+T ++ T T +E + + T G +
Sbjct: 14 RPLKLETGKVARQADGAVIATYGETVVMATVVSAKTPKEGIDFLPLTVNYQEKTYAAGRI 73
Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
P R GR + + R+I R +R + Q+I+ +
Sbjct: 74 PGGYFKR------EGRPSEKETLVSRLIDRPIRPLFADGYRCDTQVIVTTLSHDMENDPD 127
Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
A+ A A G V A + I++ E
Sbjct: 128 IVAMVAASAA-------------LTLSGVPFMGPVGAARVAFVNNEFILNPTLDEMVDTQ 174
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
+D T + ++ V+ A+ ++ + ++K + ++ +
Sbjct: 175 LDLVVAGTAT-AVLMVESEAKE--LPEEIMLGAVMFGHKHFQPVLKAIIE-LAEQ 225
>gi|84515054|ref|ZP_01002417.1| polyribonucleotide nucleotidyltransferase [Loktanella vestfoldensis
SKA53]
gi|84511213|gb|EAQ07667.1| polyribonucleotide nucleotidyltransferase [Loktanella vestfoldensis
SKA53]
Length = 713
Score = 159 bits (402), Expect = 3e-37, Method: Composition-based stats.
Identities = 45/241 (18%), Positives = 89/241 (36%), Gaps = 17/241 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +Q+R I + GS L G+T L TL +E++ +
Sbjct: 320 RIDGRALDQIRPIVSETGILPRTHGSALFTRGETQGLVVTTLGTGDDEQMIDALTGMYKS 379
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + R+ G + RAL++V+ I I +
Sbjct: 380 NFMLHYNFPPYSVGEVGRVSGPGRREIGHGKL----AWRALQAVLPAPTDFPYTIRIVSE 435
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ G +++ D ++ + V++ + + D+
Sbjct: 436 ITESNGSSSMASVCGGSLSMMDAGVPLKAAVAGVAMGLVMEDDGS--------YAVLSDI 487
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T++G I +Q + A + + L AK ++
Sbjct: 488 LGDEDHLGDMDFKVAGTENG-ITSLQMDIKIAGITPEIMKKALEQAKAGRLHILGEMSKA 546
Query: 238 I 238
+
Sbjct: 547 L 547
Score = 99 bits (247), Expect = 3e-19, Method: Composition-based stats.
Identities = 27/228 (11%), Positives = 62/228 (27%), Gaps = 25/228 (10%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGN 72
++L V++ A+GS + G+T ++ T + E
Sbjct: 18 LTLETGKVARQADGSVIATLGETSVMANVTFAKSQKPGQDFFPLTVHYQEKYYAAGKVP- 76
Query: 73 RVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITG 132
R + R+I R +R + ++
Sbjct: 77 -GGFFKREARPTEKETLTSRLIDRPIRPLFVPGFKNEVLVMCTVLSFDGVNDPDM----- 130
Query: 133 AWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDST------ID 186
+ + + G + A G + G I++ + +
Sbjct: 131 --------IAMIAASAALTISGAPFMGPIGACRVGFVDGEYILNPEIDDMHNLRTKPEQR 182
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
+D T ++ V+ A +++ + A +I +I L
Sbjct: 183 LDLVVAGTKD-AVMMVESEAYE--LTEEEMLGAVTFAHAQIQPVIDLI 227
>gi|114332122|ref|YP_748344.1| polynucleotide phosphorylase/polyadenylase [Nitrosomonas eutropha
C91]
gi|122313196|sp|Q0AE53|PNP_NITEC RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|114309136|gb|ABI60379.1| 3' exoribonuclease [Nitrosomonas eutropha C91]
Length = 705
Score = 159 bits (402), Expect = 3e-37, Method: Composition-based stats.
Identities = 47/241 (19%), Positives = 93/241 (38%), Gaps = 18/241 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +R I++ V GS L G+T L TL +E+ ++
Sbjct: 315 RIDGRGTRTVRPITIRHGVLPRTHGSALFTRGETQALVVTTLGTARDEQKIDALQGDYSE 374
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y M P +TG + + R+ G + RAL +V+ + + +
Sbjct: 375 RFMLHYNMPPFATGETGRVGSPKRREIGHGRL----AKRALLAVLPPVEEFGYAMRVVSE 430
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
V +++G + A++ G +AL D ++ + + +G+ A+ +
Sbjct: 431 VTESNGSSSMASVCGGCLALMDAGAPLKAHVAGIAMGLIKEGNRFAVLTD---------I 481
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T+ G I +Q + +++ L AK+ ++ + K
Sbjct: 482 LGDEDHLGDMDFKVAGTEEG-ITALQMDIKIQGITKEIMQVALLQAKEGRLHILDIMKQS 540
Query: 238 I 238
+
Sbjct: 541 L 541
Score = 83.0 bits (203), Expect = 3e-14, Method: Composition-based stats.
Identities = 35/241 (14%), Positives = 73/241 (30%), Gaps = 44/241 (18%)
Query: 14 ISLTRR-VSKYAEGSCLVKF----------GD--THLLTTATLEEKVPMWIRNTKHGWIT 60
+++ ++K A G+ +V GD T + +
Sbjct: 15 LTIETGEIAKQAHGAVMVSMDDTVVLVTVVGDKKTK--------PGQDFFPLTVDYQEKF 66
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
G +P S R GR + R+I R +R + Q+I
Sbjct: 67 YSAGRIPGSFFKR------EGRPSEKEILTSRLIDRPIRPLFPDGFYNEVQVIAMVLSSD 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
A+ A GA A G + A G + +++
Sbjct: 121 AEIDADIPATIGASAA-------------LILSGIPFDGPIGAARVGYIDNEYVLNPTTT 167
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
+ + ++ T ++ V+ A S+D + D++ +I + + +++
Sbjct: 168 QLNKSQLNLVVAGTQK-AVLMVESEANE--LSEDVMLGAVTYGHDQMQQVINMINE-LAD 223
Query: 241 E 241
E
Sbjct: 224 E 224
>gi|158317399|ref|YP_001509907.1| ribonuclease PH [Frankia sp. EAN1pec]
gi|226736910|sp|A8L766|RNPH_FRASN RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|158112804|gb|ABW15001.1| ribonuclease PH [Frankia sp. EAN1pec]
Length = 260
Score = 159 bits (402), Expect = 3e-37, Method: Composition-based stats.
Identities = 107/235 (45%), Positives = 148/235 (62%), Gaps = 7/235 (2%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+R+ GR +Q+R++++ R ++AEGS L+ G T +L A++ E VP W + + GW+T
Sbjct: 2 IRVDGRTTDQLRDVTIERGWQEHAEGSALISAGRTRVLCAASVTEGVPRWRKGSGLGWVT 61
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEY MLPR+T R RE+V GR GGR+ EI R+IGR+LR+ +DL ALG I IDCDV+
Sbjct: 62 AEYSMLPRATHTRNDRESVRGRIGGRTHEISRLIGRSLRAAIDLKALGENTIAIDCDVLL 121
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTAAITGA+VAL D + + + V A+S G++ G P++DL Y
Sbjct: 122 ADGGTRTAAITGAYVALADACRWLGRPAAIVTS-------VCAVSVGVVGGVPMLDLAYT 174
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
EDST D D N V T +G VEVQG+AE F + +L+LA L ++Q
Sbjct: 175 EDSTADTDMNVVRTGAGGFVEVQGTAEGTPFERSTLDELLDLAVAGCTRLTEIQN 229
>gi|304436486|ref|ZP_07396460.1| polyribonucleotide nucleotidyltransferase [Selenomonas sp. oral
taxon 149 str. 67H29BP]
gi|304370532|gb|EFM24183.1| polyribonucleotide nucleotidyltransferase [Selenomonas sp. oral
taxon 149 str. 67H29BP]
Length = 690
Score = 159 bits (402), Expect = 3e-37, Method: Composition-based stats.
Identities = 43/242 (17%), Positives = 88/242 (36%), Gaps = 18/242 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56
+R GR +++R +S + GS L G T +LT T +E++ +
Sbjct: 311 IRPDGRALDEVRPVSCEVGILPRVHGSGLFTRGQTQVLTVTTLGAIGDEQIIDGLGPETT 370
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y S G + R+ G RAL ++ I +
Sbjct: 371 KHYLHHYNFPGYSVGEARPMRSPGRREIGHGAL----AERALFPMIPSIEDFPYTIRLVS 426
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
++++++G + ++ G+ ++L ++ + + V G +I
Sbjct: 427 EILESNGSSSMGSVCGSTLSLMCAGVPIKRPVSGVAMGLVRDGDDYSILTD--------- 477
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED+ D+D T G + +Q + A ++D + L AK A ++ +
Sbjct: 478 IQGMEDALGDMDFKVAGTSKG-LTAIQMDIKIAGITRDILASALEQAKKGRAFILSKMLE 536
Query: 237 VI 238
I
Sbjct: 537 CI 538
Score = 101 bits (250), Expect = 1e-19, Method: Composition-based stats.
Identities = 42/232 (18%), Positives = 85/232 (36%), Gaps = 28/232 (12%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKHGWITAEYGML 66
R++++ ++K A G+ LV++GDT +L TAT E V + + G +
Sbjct: 11 RKLTVEHGKMAKQANGAVLVRYGDTVVLVTATASKAPREGVDFFPLTVDYEEKMYAAGKI 70
Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
P R GR + R+I R +R + QI+ ++ D
Sbjct: 71 PGGFIKR------EGRPSSDAVLCARLIDRPIRPLFPDGFRNDVQIVATVLSVEQDNPPE 124
Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
AA+ GA A G +A + G + G +++ + + D
Sbjct: 125 IAAMFGASCA-------------LTVSDIPFMGPIAGVRVGYINGEFVINPTEEQRADSD 171
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAM-LNLAKDRIADLIKLQKDV 237
++ + ++ V+ A ++ + I L++ Q+++
Sbjct: 172 LNLTVAGSYD-AVMMVEAGANE--LPEEIVLDAIILFGHAEIRRLVEFQQNI 220
>gi|257463538|ref|ZP_05627931.1| polynucleotide phosphorylase/polyadenylase [Fusobacterium sp. D12]
Length = 743
Score = 159 bits (402), Expect = 3e-37, Method: Composition-based stats.
Identities = 50/243 (20%), Positives = 92/243 (37%), Gaps = 18/243 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR ++R + V GS L G+T L TATL +E++ + +
Sbjct: 360 RVDGRSTTEIRPLDAQINVLPIPHGSALFTRGETQSLATATLGTKEDEQLVDNLEKEYYK 419
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + A R+ G RALR V+ I + D
Sbjct: 420 KFYLHYNFPPYSVGETGRMGAPGRRELGHGSL----AERALRYVIPTEEEFPYTIRVVSD 475
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A+I G +AL +++ + + +G + ++
Sbjct: 476 ITESNGSSSQASICGGSLALMSAGVPIKEHVAGIAMGLIKEGEEFTVLTDIM-------- 527
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T SG I +Q + +++ L+ A ++++
Sbjct: 528 -GLEDHLGDMDFKVAGTKSG-ITALQMDIKITGITEEIMRIALSQAHVARQQILEVMNAA 585
Query: 238 ISN 240
IS+
Sbjct: 586 ISS 588
Score = 101 bits (251), Expect = 9e-20, Method: Composition-based stats.
Identities = 33/233 (14%), Positives = 75/233 (32%), Gaps = 27/233 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGML 66
R + ++ +++ + G+ ++++GDT LL+T + V + + G
Sbjct: 50 RSLKVSTGKIARQSCGAIMIQYGDTVLLSTVNRSKEARKGVDFFPLTVDYIEKFYAAGKF 109
Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
P R R + I R+I R +R + I+
Sbjct: 110 PGGFNKR------ESRPSTDATLIARLIDRPIRPMFPEGFTYDVHIVNTVFSFDEKNTPD 163
Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
I + +A G VA + G + G +++ +
Sbjct: 164 YLGIIASSLA-------------LSISDIPFLGPVAGVVVGYIDGEFVLNPTPEQLEKSL 210
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
+D + T + V+ A+ ++ + A + I + Q++ +
Sbjct: 211 LDLSVAGTKE-AVNMVEAGAKE--LDEETMLKAILFAHENIKKICAFQEEFVK 260
>gi|307942752|ref|ZP_07658097.1| polyribonucleotide nucleotidyltransferase [Roseibium sp. TrichSKD4]
gi|307773548|gb|EFO32764.1| polyribonucleotide nucleotidyltransferase [Roseibium sp. TrichSKD4]
Length = 710
Score = 159 bits (402), Expect = 3e-37, Method: Composition-based stats.
Identities = 46/243 (18%), Positives = 92/243 (37%), Gaps = 18/243 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR + +R IS + A GS L G+T L ATL +E+ ++ T
Sbjct: 316 RIDGRDLSTVRAISSEVGILPRAHGSALFTRGETQGLVVATLGTGEDEQFVDLLQGTMKE 375
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + + R+ G + RA+ ++ + + +
Sbjct: 376 HFMLHYNFPPYSVGETGRMGSPGRREIGHGKL----AWRAVHPMLPAHHEFPYTLRVVSE 431
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A + G +AL D ++ + + +G A+ +
Sbjct: 432 ITESNGSSSMATVCGTSLALMDAGVPLKAPVAGIAMGLIKEGDRFAVLSD---------I 482
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D +++G I +Q + +++ L AKD ++ +
Sbjct: 483 LGDEDHLGDMDFKVAGSENG-ITSLQMDIKIDGITEEIMKVALAQAKDGRIHILGEMANA 541
Query: 238 ISN 240
I+
Sbjct: 542 ITE 544
Score = 104 bits (260), Expect = 9e-21, Method: Composition-based stats.
Identities = 30/228 (13%), Positives = 66/228 (28%), Gaps = 27/228 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----HGWITAEYGML 66
R + L +++ A+G+ + +G+T ++ T + + G +
Sbjct: 14 RPLVLETGKIARQADGAVMATYGETKVMATVVSAKSPKPGQDFFPLTVNYQEKAFAAGKI 73
Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
P R GR R+I R +R + Q+I+ +
Sbjct: 74 PGGYFKR------EGRPSEHETLTSRLIDRPIRPLFADGYKNDTQVILTVLSHDMENAPD 127
Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
A+ A A G + G + G +++ +
Sbjct: 128 ILAMVAASAA-------------LTLSGVPFMGPIGGARVGYINGEYVLNPAVDDMEESS 174
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
+D T ++ V+ A+ +D + + +I
Sbjct: 175 LDLVVAGTSE-AVLMVESEAKE--LDEDTMLGAVVFGQKGFQPVIDAI 219
>gi|123440458|ref|YP_001004452.1| ribonuclease PH [Yersinia enterocolitica subsp. enterocolitica
8081]
gi|166228324|sp|A1JHW7|RNPH_YERE8 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|122087419|emb|CAL10200.1| ribonuclease PH [Yersinia enterocolitica subsp. enterocolitica
8081]
Length = 238
Score = 159 bits (402), Expect = 3e-37, Method: Composition-based stats.
Identities = 118/240 (49%), Positives = 159/240 (66%), Gaps = 2/240 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR + R Q+R ++LTR +K+AEGS LV+FGDT +L TAT+EE VP +++ GWIT
Sbjct: 1 MRPADRAAQQVRPLTLTRNYTKHAEGSVLVEFGDTKVLCTATVEEGVPRFLKGQGQGWIT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPRST +R REA G+QGGR+ EIQR+I R+LR+ VDL LG I +DCDV+Q
Sbjct: 61 AEYGMLPRSTHSRNAREAAKGKQGGRTLEIQRLIARSLRAAVDLKKLGEFTITLDCDVLQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+I+GA VAL D L + + +KG VAA+S G++ G + DL+Y
Sbjct: 121 ADGGTRTASISGACVALADALNKLVAS--GKLKANPMKGLVAAVSVGIVKGEALCDLEYV 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
EDS + D N VM + G ++EVQG+AE FS + +L LA+ I + + QK +
Sbjct: 179 EDSAAETDMNVVMMEDGRMIEVQGTAEGEPFSHEELLTLLALARGGIETIFQAQKAALEQ 238
>gi|145589238|ref|YP_001155835.1| polynucleotide phosphorylase/polyadenylase [Polynucleobacter
necessarius subsp. asymbioticus QLW-P1DMWA-1]
gi|187610308|sp|A4SXQ7|PNP_POLSQ RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|145047644|gb|ABP34271.1| 3' exoribonuclease [Polynucleobacter necessarius subsp.
asymbioticus QLW-P1DMWA-1]
Length = 722
Score = 159 bits (402), Expect = 3e-37, Method: Composition-based stats.
Identities = 47/243 (19%), Positives = 95/243 (39%), Gaps = 18/243 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +R I + V GS L G+T L ATL +E++ +
Sbjct: 316 RIDGRDTRTVRPIEIRNGVLPRTHGSALFTRGETQALVVATLGTARDEQIIDALEGEYRD 375
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y M P +TG + + R+ G + RAL V+ + + I + +
Sbjct: 376 RFMFHYNMPPFATGETGRVGSPKRREIGHGRL----AKRALIPVLPSAEDFAYSIRVVSE 431
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ G +A+ D ++ + +L G+ A+ +
Sbjct: 432 ITESNGSSSMASVCGGCLAMMDAGVPVKAHVAGVAMGLILDGNRFAVLTD---------I 482
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T +G I +Q + +++ L AK+ ++ ++
Sbjct: 483 LGDEDHLGDMDFKVAGTANG-ITALQMDIKVQGITKEIMQVALAQAKEGRLHILSKMQEA 541
Query: 238 ISN 240
+ +
Sbjct: 542 MGS 544
Score = 83.0 bits (203), Expect = 3e-14, Method: Composition-based stats.
Identities = 39/232 (16%), Positives = 80/232 (34%), Gaps = 27/232 (11%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPM----WIRNTKHGWITAEYGMLPR 68
+++ +++ + G+ +V DT ++ T + + + T G +P
Sbjct: 18 VTMETGEIARQSGGAVIVNVDDTVVMGTVVASKSAKPGQSFFPLTVDYLEKTYAAGKIPG 77
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
R GR I R+I R LR + L Q++I I D +
Sbjct: 78 GFFRR------EGRPSEGETLISRLIDRPLRPLFPEGFLNEVQVVIHVLSINPDVPSDIP 131
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+ A AL V A G G +++ E +T ++D
Sbjct: 132 ALIAASAALAISGIPFAG-------------PVGAARVGYANGQYLLNPTRTEQATSELD 178
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
T + ++ V+ A + S++ + D++ I ++++
Sbjct: 179 LIVAGTQA-AVLMVESEANQ--LSEEVMLGAVVYGHDQMQTAINAINELVAE 227
>gi|224825869|ref|ZP_03698973.1| Polyribonucleotide nucleotidyltransferase [Lutiella nitroferrum
2002]
gi|224602093|gb|EEG08272.1| Polyribonucleotide nucleotidyltransferase [Lutiella nitroferrum
2002]
Length = 719
Score = 159 bits (402), Expect = 3e-37, Method: Composition-based stats.
Identities = 45/242 (18%), Positives = 93/242 (38%), Gaps = 18/242 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +R I++ V GS L G+T + TL +E++ +
Sbjct: 316 RIDGRDTRTVRPIAIRTGVLPRTHGSALFTRGETQAMVVTTLGTQRDEQIIDALAGEYTD 375
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P STG + R+ G + RAL V+ + + + +
Sbjct: 376 RFMLHYNFPPYSTGEAGRMGPPKRREIGHGRL----AKRALAQVLPSADEFGYSMRVVSE 431
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ G +AL + ++ + +L+G+ A+ +
Sbjct: 432 ITESNGSSSMASVCGGCLALLNAGVPLKAHVAGIAMGLILEGNRFAVLTD---------I 482
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T G + +Q + +++ L+ AK+ ++ L K+
Sbjct: 483 LGDEDHLGDMDFKVAGTAEG-VTALQMDIKIQGITKEIMQVALDQAKEGRLHILGLMKEA 541
Query: 238 IS 239
+
Sbjct: 542 VE 543
Score = 99.5 bits (246), Expect = 3e-19, Method: Composition-based stats.
Identities = 42/234 (17%), Positives = 78/234 (33%), Gaps = 28/234 (11%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT----KHGWITAEYGMLPR 68
++L V++ A G+ LV DT +L + + V + T G +P
Sbjct: 16 VTLETGEVARQASGAVLVTMEDTVVLVSVVGSQNVKPGQDFFPLTVDYLERTYAAGKIPG 75
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
R G+Q + R+I R +R + QI+ + + +
Sbjct: 76 GFFKR------EGKQSEKEILTSRLIDRPIRPLFPEGFYHDVQIVATVMSLNPEIDSDIP 129
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+ GA A G + A G G I++ E T +D
Sbjct: 130 AMIGASAA-------------LAISGLPFNGPIGAARVGYANGDYILNPTKTELETSQLD 176
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNEV 242
T ++ V+ A+ + + D++ IK + +++EV
Sbjct: 177 LVVAGT-HRAVLMVESEAKE--LPEAVMLGAVVFGHDQLQAAIKAINE-LADEV 226
>gi|303257193|ref|ZP_07343207.1| polyribonucleotide nucleotidyltransferase [Burkholderiales
bacterium 1_1_47]
gi|302860684|gb|EFL83761.1| polyribonucleotide nucleotidyltransferase [Burkholderiales
bacterium 1_1_47]
Length = 724
Score = 159 bits (402), Expect = 3e-37, Method: Composition-based stats.
Identities = 47/242 (19%), Positives = 94/242 (38%), Gaps = 18/242 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +R I + V A GS L G+T L TL +E++ + +
Sbjct: 322 RIDGRDTRTVRPIEIRTGVLPRAHGSALFTRGETQALVVTTLGTKQDEQIVDGLTGEQRE 381
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y M P +TG + + R+ G + RAL +V+ + + +
Sbjct: 382 RFMLHYNMPPFATGETGRVGSPKRREIGHGRL----AKRALTAVLPNEEDFQYTMRVVSE 437
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ G ++L D ++D + + +G+ A+ +
Sbjct: 438 ICESNGSSSMASVCGGCLSLLDAGVPLKDFVAGVAMGLIKEGNKFAVLTD---------I 488
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D TD G + +Q + S++ L AK+ ++ +
Sbjct: 489 LGDEDHLGDMDFKVAGTDHG-VTALQMDIKIEGISKEIMQVALAQAKEGRMHILGKMHEA 547
Query: 238 IS 239
+
Sbjct: 548 VE 549
Score = 99 bits (247), Expect = 2e-19, Method: Composition-based stats.
Identities = 32/233 (13%), Positives = 76/233 (32%), Gaps = 27/233 (11%)
Query: 13 EISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT----KHGWITAEYGMLP 67
+ +++ A G+ + DT +L T ++++ + T G +P
Sbjct: 17 NVRFETGEIARQASGAVICDMDDTVVLATVVAKKEIKPGQDFFPLTVDYIEKTYAAGRIP 76
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R GR + R+I R +R + QIII + +
Sbjct: 77 GGFFKR------EGRPSEKETLTSRLIDRPIRPLFPEGFFNEVQIIIHVLSVNPEVDPDI 130
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
++ A A G +AA G + ++ + + +
Sbjct: 131 PSMIAASAA-------------LAVSGVPFNGPIAAARVGYINNEYVLCPNLSQMKDSKL 177
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
D T+ ++ V+ +E S++ + +++ +I+ +++
Sbjct: 178 DLVVAGTER-AVLMVE--SEADQLSEEVMLGAVMFGYEKMQVVIEAIDELVEE 227
>gi|262197030|ref|YP_003268239.1| polyribonucleotide nucleotidyltransferase [Haliangium ochraceum DSM
14365]
gi|262080377|gb|ACY16346.1| polyribonucleotide nucleotidyltransferase [Haliangium ochraceum DSM
14365]
Length = 711
Score = 159 bits (402), Expect = 3e-37, Method: Composition-based stats.
Identities = 44/241 (18%), Positives = 90/241 (37%), Gaps = 18/241 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +++R IS + A GS L G+T L +AT+ +E+ +
Sbjct: 321 RIDGRAYDEIRAISCEVGILPSAHGSALFTRGETQALVSATMGTRYDEQKLDTLLGGMQK 380
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P TG + S R+ G R++ V+ + + +
Sbjct: 381 PFFLHYNFPPFCTGEAKPIRSTSRRELGHGNL----AERSIAQVMPEREDFPYTVRVVSE 436
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+++++G + A++ GA ++L D + + +++G AI +
Sbjct: 437 ILESNGSSSMASVCGASLSLMDAGVPVLSPVAGIAMGLMMEGERYAILSD---------I 487
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T G + +Q + ++D L A+ ++ +
Sbjct: 488 LGDEDHMGDMDFKVTGTARG-VCALQMDIKLKGLTRDILVEALEQARRGRMHILDKMAEA 546
Query: 238 I 238
+
Sbjct: 547 L 547
Score = 107 bits (266), Expect = 2e-21, Method: Composition-based stats.
Identities = 49/229 (21%), Positives = 80/229 (34%), Gaps = 27/229 (11%)
Query: 13 EISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRN----TKHGWITAEYGMLP 67
EI + +K A GS +V+ GDT +L TAT + + + ++ T G +P
Sbjct: 14 EIIIETGKWAKQASGSVVVRCGDTMVLVTATASKSPRVGMDFLPLTCEYQEKTYSAGKIP 73
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
+ R R + R++ R R + Q+I +
Sbjct: 74 GNFFRR------EARPSTDEVLVARLMDRPSRPLFPKLWRCETQLIANVVSFDQSNAADV 127
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
A+TG+ ALH G VAA+ G + G + + E D+
Sbjct: 128 LAMTGSSCALH-------------ISDIPWDGPVAAVRVGRVAGEFVAFPTFEEREQSDI 174
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
D + IV V+G + L A + + LI LQ+
Sbjct: 175 DMIVSASRD-AIVMVEGGMREVP--EQVLIDALLFAHEAVQPLIDLQEK 220
>gi|169350006|ref|ZP_02866944.1| hypothetical protein CLOSPI_00746 [Clostridium spiroforme DSM 1552]
gi|169293219|gb|EDS75352.1| hypothetical protein CLOSPI_00746 [Clostridium spiroforme DSM 1552]
Length = 710
Score = 159 bits (402), Expect = 3e-37, Method: Composition-based stats.
Identities = 49/244 (20%), Positives = 90/244 (36%), Gaps = 18/244 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56
+R GR+ +++R + + GS L G+T +L+ AT E + +
Sbjct: 318 IRPDGRRLDEIRPLDSQIDLLPRVHGSALFTRGETQVLSVATLGAIGEHQKIDGLGLEDQ 377
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P S G + A R+ G RAL V+ + I +
Sbjct: 378 KRFMHHYNFPPYSVGEVGRMGAPGRREIGHGALG----ERALAQVIPGEDVFPYTIRVVS 433
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V++++G + A+I + +AL ++ + V KG + D
Sbjct: 434 EVLESNGSSSQASICASSMALMAAGVPIKAPVAGVAMGLVKKGDD---------YTILTD 484
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D TD G I +Q + +++ L AK +++
Sbjct: 485 IQGMEDHLGDMDFKVAGTDEG-ICALQMDIKIDGITKEILQEALAQAKVARREIMANMMA 543
Query: 237 VISN 240
VI+
Sbjct: 544 VINE 547
Score = 111 bits (276), Expect = 1e-22, Method: Composition-based stats.
Identities = 47/231 (20%), Positives = 83/231 (35%), Gaps = 26/231 (11%)
Query: 13 EISLTRR-VSKYAEGSCLVKFGDTHLLTTATL---EEKVPMWIRNTKHGWITAEYGMLPR 68
+S+ ++K A GS LV++ DT +L+T + V + + G +P
Sbjct: 14 NLSVEIGELAKQANGSVLVRYNDTVILSTVVAGKEPKDVDFFPLTVTYEEKLYSVGKIPG 73
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
R GR RMI R +R + Q + + D A
Sbjct: 74 GFLKR------EGRPSEHGTLTARMIDRPIRPLFADGFRNEVQSVNTVLSVDQDASPEMA 127
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+ GA +AL G +A ++ G++ G IV+ + ++
Sbjct: 128 AMLGASLALC-------------VSDIPFNGPIAGVNVGLVDGEFIVNGTPEQLERSLIN 174
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
T I V+ A+ S++ L ++I +LI Q+ V+
Sbjct: 175 LEVAGTKD-AINMVEADAKE--VSEEVMLEALLFGHEKIKELIAFQEKVVE 222
>gi|190889779|ref|YP_001976321.1| polyribonucleotide nucleotidyltransferase [Rhizobium etli CIAT 652]
gi|190695058|gb|ACE89143.1| polyribonucleotide nucleotidyltransferase protein [Rhizobium etli
CIAT 652]
Length = 706
Score = 159 bits (402), Expect = 3e-37, Method: Composition-based stats.
Identities = 44/243 (18%), Positives = 87/243 (35%), Gaps = 18/243 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +R I + GS L G+T + ATL +E+ +
Sbjct: 310 RIDGRDLETVRPIVSEVGLLPRTHGSALFTRGETQAIVVATLGTGEDEQYVDSLTGMYKE 369
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + + R+ G + RA+R ++ + + + +
Sbjct: 370 RFLLHYNFPPYSVGETGRMGSPGRREIGHGKL----AWRAIRPMLPSAEQFPYTLRVVSE 425
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A + G +AL D + + +L+G A+ +
Sbjct: 426 ITESNGSSSMATVCGTSLALMDAGVPLAKPVAGIAMGLILEGDRFAVLSD---------I 476
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T G I +Q + A +++ L+ A+ ++
Sbjct: 477 LGDEDHLGDMDFKVAGTADG-ITSLQMDIKIAGITEEIMKVALSQAQGGRTHILGEMAKA 535
Query: 238 ISN 240
I+
Sbjct: 536 ITE 538
Score = 111 bits (278), Expect = 8e-23, Method: Composition-based stats.
Identities = 31/228 (13%), Positives = 66/228 (28%), Gaps = 27/228 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----HGWITAEYGML 66
R + L +++ A+G+ L +G+T +L T + + T G +
Sbjct: 8 RPLKLETGKIARQADGAVLATYGETVVLATVVSAKAPKPGQDFFPLTVNYQEKTYAAGKI 67
Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
P R GR + R+I R +R + Q+++ +
Sbjct: 68 PGGYFKR------EGRPSENETLVSRLIDRPIRPLFPEGYKNDTQVVVTVIQHDLENNPD 121
Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
++ A G V G + G +++ E
Sbjct: 122 ILSMVATSAA-------------LTLSGVPFMGPVGGARVGYINGEYVLNPHLDEMDESS 168
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
+D T ++ V+ A+ +D + ++
Sbjct: 169 LDLVVAGTYD-AVLMVESEAKE--LPEDVMLGAVMFGHKGFQPVLDAI 213
>gi|222055786|ref|YP_002538148.1| Polyribonucleotide nucleotidyltransferase [Geobacter sp. FRC-32]
gi|257096693|sp|B9M1G5|PNP_GEOSF RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|221565075|gb|ACM21047.1| Polyribonucleotide nucleotidyltransferase [Geobacter sp. FRC-32]
Length = 696
Score = 159 bits (402), Expect = 3e-37, Method: Composition-based stats.
Identities = 49/242 (20%), Positives = 88/242 (36%), Gaps = 18/242 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +R+I+ + A GS L G+T L ATL +E+ +
Sbjct: 312 RIDGRDTKTIRQITTEVGLLPRAHGSALFTRGETQALVVATLGTSIDEQRIDSLFGESKK 371
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G R A R+ G RAL VV I I D
Sbjct: 372 RFLLHYNFPPFSVGETSFRLAPGRREIGHGML----AERALARVVPKHESFPYTIRIVSD 427
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+++++G + A++ G +++ D ++ + + +G AI +
Sbjct: 428 ILESNGSSSMASVCGGSMSMMDAGIPIKAPVAGIAMGLIKEGDDFAILSD---------I 478
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T +G + +Q + +++ L A + ++ +
Sbjct: 479 LGDEDHLGDMDFKVAGTSTG-VTALQMDIKIGGVTREIMGVALKQAHEGRLHILSKMAET 537
Query: 238 IS 239
I
Sbjct: 538 IG 539
Score = 107 bits (266), Expect = 2e-21, Method: Composition-based stats.
Identities = 46/235 (19%), Positives = 84/235 (35%), Gaps = 28/235 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTKHGWITAEYGML 66
R I++ ++K A G+ +V GDT +L TA T +E + + G +
Sbjct: 12 RTITIETGKMAKQASGAVVVSSGDTRVLVTAVATKTAKEGQDFFPLTVNYQEKAYAGGKI 71
Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
P R R R+I R +R + + L QI+ D
Sbjct: 72 PGGFFKR------EARPSDNETLTCRLIDRPIRPLFPDNFLNDTQIMATVISADKDNDPG 125
Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
++ GA AL +G +A + G + G + + + E D
Sbjct: 126 ILSMVGASAALM-------------VSDIPFQGPIAGVKVGRIDGRFVANPGFEEMEKSD 172
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
++ + I+ V+GSA A S++ + I L+ Q + ++ +
Sbjct: 173 IEIVVAASKD-AIIMVEGSA--AEVSEEDMLEAIFFGHAAIQGLLAAQVE-LAEK 223
>gi|257096719|sp|B3PXD7|PNP_RHIE6 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
Length = 712
Score = 159 bits (402), Expect = 3e-37, Method: Composition-based stats.
Identities = 44/243 (18%), Positives = 87/243 (35%), Gaps = 18/243 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +R I + GS L G+T + ATL +E+ +
Sbjct: 316 RIDGRDLETVRPIVSEVGLLPRTHGSALFTRGETQAIVVATLGTGEDEQYVDSLTGMYKE 375
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + + R+ G + RA+R ++ + + + +
Sbjct: 376 RFLLHYNFPPYSVGETGRMGSPGRREIGHGKL----AWRAIRPMLPSAEQFPYTLRVVSE 431
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A + G +AL D + + +L+G A+ +
Sbjct: 432 ITESNGSSSMATVCGTSLALMDAGVPLAKPVAGIAMGLILEGDRFAVLSD---------I 482
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T G I +Q + A +++ L+ A+ ++
Sbjct: 483 LGDEDHLGDMDFKVAGTADG-ITSLQMDIKIAGITEEIMKVALSQAQGGRTHILGEMAKA 541
Query: 238 ISN 240
I+
Sbjct: 542 ITE 544
Score = 111 bits (277), Expect = 8e-23, Method: Composition-based stats.
Identities = 31/228 (13%), Positives = 66/228 (28%), Gaps = 27/228 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----HGWITAEYGML 66
R + L +++ A+G+ L +G+T +L T + + T G +
Sbjct: 14 RPLKLETGKIARQADGAVLATYGETVVLATVVSAKAPKPGQDFFPLTVNYQEKTYAAGKI 73
Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
P R GR + R+I R +R + Q+++ +
Sbjct: 74 PGGYFKR------EGRPSENETLVSRLIDRPIRPLFPEGYKNDTQVVVTVIQHDLENNPD 127
Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
++ A G V G + G +++ E
Sbjct: 128 ILSMVATSAA-------------LTLSGVPFMGPVGGARVGYINGEYVLNPHLDEMDESS 174
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
+D T ++ V+ A+ +D + ++
Sbjct: 175 LDLVVAGTYD-AVLMVESEAKE--LPEDVMLGAVMFGHKGFQPVLDAI 219
>gi|300789523|ref|YP_003769814.1| ribonuclease PH [Amycolatopsis mediterranei U32]
gi|299799037|gb|ADJ49412.1| ribonuclease PH [Amycolatopsis mediterranei U32]
Length = 258
Score = 159 bits (402), Expect = 3e-37, Method: Composition-based stats.
Identities = 112/238 (47%), Positives = 158/238 (66%), Gaps = 1/238 (0%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R GR ++Q+R+I +TR ++ GS L++FG+T +L A++ E VP W + GW+TA
Sbjct: 3 RKDGRNDDQLRDIKITRGFQQWPAGSVLIEFGNTRVLCAASVTEGVPRWRAGSGLGWVTA 62
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
EY MLP +T R RE+V GR GGR+ EI R+IGR+LR+ +DL+ALG I+IDCDVIQA
Sbjct: 63 EYAMLPSATNTRGDRESVKGRIGGRTHEISRLIGRSLRACIDLAALGENTIVIDCDVIQA 122
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
DGGTRTAA+TG +VAL D +N+ Q L VAA+S G++ G +DL Y E
Sbjct: 123 DGGTRTAAVTGGYVALADA-ITWLSAANRLNDPQPLSSSVAAVSVGVVDGRVRLDLPYEE 181
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
DS +VD N V TD+G ++EVQG+ E ATF++ ML++A A+L +LQ + ++
Sbjct: 182 DSRAEVDMNVVATDAGTLIEVQGTGEGATFARSTLDTMLDMALAGCAELTRLQNEALA 239
>gi|225025578|ref|ZP_03714770.1| hypothetical protein EIKCOROL_02480 [Eikenella corrodens ATCC
23834]
gi|224941616|gb|EEG22825.1| hypothetical protein EIKCOROL_02480 [Eikenella corrodens ATCC
23834]
Length = 701
Score = 159 bits (401), Expect = 3e-37, Method: Composition-based stats.
Identities = 47/242 (19%), Positives = 93/242 (38%), Gaps = 18/242 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +R I++ V GS L G+T L ATL +E++ +
Sbjct: 316 RIDGRDTRTVRPINIQTGVLPRTHGSALFTRGETQALAVATLGTQRDEQIIDALSGEYTD 375
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P STG + A R+ G + RAL V+ S + + +
Sbjct: 376 RFMLHYNFPPYSTGECGRMGAPKRREIGHGRL----AKRALLGVLPSPEEFSYTMRVVSE 431
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ G ++L ++ + +L+G+ A+ +
Sbjct: 432 ITESNGSSSMASVCGGCLSLLSAGVPLKAHVAGIAMGLILEGNKFAVLTD---------I 482
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T G + +Q + +++ L AK+ +++ K
Sbjct: 483 LGDEDHLGDMDFKVAGTTEG-VTALQMDIKIQGITKEIMQIALAQAKEARLHILEQMKAA 541
Query: 238 IS 239
++
Sbjct: 542 VA 543
Score = 95.3 bits (235), Expect = 6e-18, Method: Composition-based stats.
Identities = 36/234 (15%), Positives = 80/234 (34%), Gaps = 28/234 (11%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT----KHGWITAEYGMLPR 68
+++ +++ A G+ V G+T +L T ++V + T G +P
Sbjct: 16 VTIETGEIARQAAGAVKVSMGETVVLVAVTANKEVKAGQDFFPLTVDYLERTYAAGKIPG 75
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
R G+Q + R+I R +R + QI+ + + +
Sbjct: 76 GFFKR------EGKQSEKEILTSRLIDRPIRPLFPEGFFHDIQIVATVVSVDPEIDSDIP 129
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+ GA A G + A G L G +++ + + +D
Sbjct: 130 AMIGASAA-------------LVLSGVPFAGPIGAARVGYLNGEYVLNPTKTQLAKSQLD 176
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNEV 242
T ++ V+ A+ +D + + + +I+ + +++ V
Sbjct: 177 LVVAGTAQ-AVLMVESEAQI--LPEDVMLGAVVYGHNEMQAVIRAINE-LADAV 226
>gi|238789552|ref|ZP_04633336.1| Ribonuclease PH [Yersinia frederiksenii ATCC 33641]
gi|238722305|gb|EEQ13961.1| Ribonuclease PH [Yersinia frederiksenii ATCC 33641]
Length = 238
Score = 159 bits (401), Expect = 3e-37, Method: Composition-based stats.
Identities = 118/240 (49%), Positives = 161/240 (67%), Gaps = 2/240 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR + R Q+R ++LTR +K+AEGS LV+FGDT +L TAT+EE VP +++ GWIT
Sbjct: 1 MRPADRAAQQVRPLTLTRNYTKHAEGSVLVEFGDTKVLCTATVEEGVPRFLKGQGQGWIT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPR+T +R REA G+QGGR+ EIQR+I R+LR+ VDL LG I +DCDV+Q
Sbjct: 61 AEYGMLPRATHSRNAREAAKGKQGGRTLEIQRLIARSLRAAVDLKKLGEFTITLDCDVLQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+I+GA VAL D L + + +KG VAA+S G++ G + DL+Y
Sbjct: 121 ADGGTRTASISGACVALADALNKLVAS--GKLKANPMKGLVAAVSVGIVKGEALCDLEYV 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
EDS + D N VM + G ++EVQG+AE FS + A+L+LA+ I + + QK +
Sbjct: 179 EDSAAETDMNVVMMEDGRMIEVQGTAEGEPFSHEELLALLDLARGGIETIFQAQKAALEQ 238
>gi|332799230|ref|YP_004460729.1| polyribonucleotide nucleotidyltransferase [Tepidanaerobacter sp.
Re1]
gi|332696965|gb|AEE91422.1| Polyribonucleotide nucleotidyltransferase [Tepidanaerobacter sp.
Re1]
Length = 700
Score = 159 bits (401), Expect = 3e-37, Method: Composition-based stats.
Identities = 50/244 (20%), Positives = 90/244 (36%), Gaps = 18/244 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56
+R GR NQ+R IS + GS L G T +LT AT + ++ + +
Sbjct: 310 IRPDGRTPNQIRPISCEVGILPRTHGSGLFTRGQTQVLTVATLGALGDVQILDGLGIEES 369
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P STG R+ G RAL ++ I +
Sbjct: 370 KRYMHHYNFPPYSTGETKVIRGPGRREIGHGAL----AERALEPMIPSEEDFPYTIRLVS 425
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V+ ++G + A++ G+ +AL D ++ + + + +G + D
Sbjct: 426 EVLSSNGSSSMASVCGSTLALMDAGVPIKAPVSGVAMGLIKQGDKV---------TILTD 476
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T +G I +Q + +D + L A++ ++
Sbjct: 477 IQGMEDFLGDMDFKVAGTKNG-ITAIQMDIKIKGIDEDILKSALQQAREGRLFIMDKMLS 535
Query: 237 VISN 240
VI
Sbjct: 536 VIPE 539
Score = 109 bits (272), Expect = 3e-22, Method: Composition-based stats.
Identities = 47/234 (20%), Positives = 87/234 (37%), Gaps = 27/234 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKHGWITAEYGML 66
R++ + V++ A GS ++++ DT LL TAT E V + G +
Sbjct: 11 RKLIIETGKVAQQANGSVMIRYEDTVLLVTATASKKPREGVDFLPLTIDYEEKLYAVGKI 70
Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
P R G+ ++ R+I R LR + Q+I + D
Sbjct: 71 PGGFIKR------EGKPSEKAILSARLIDRPLRPLFPKDFRNDVQVIATVLSVDQDNTPD 124
Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
AI GA AL +G V A+S G++ G +++ E
Sbjct: 125 IVAINGASCALC-------------ISDIPFEGPVGAVSVGLIDGKYVINPTVSEAEKSR 171
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
+ T ++ V+ A+ S++ + + + I +I Q+++I+
Sbjct: 172 LRLVVAGTKE-AVLMVEAGADE--VSENEMLSAILYGHEEIKKIIAFQEEIINE 222
>gi|291532399|emb|CBL05512.1| polyribonucleotide nucleotidyltransferase [Megamonas hypermegale
ART12/1]
Length = 574
Score = 159 bits (401), Expect = 3e-37, Method: Composition-based stats.
Identities = 47/244 (19%), Positives = 86/244 (35%), Gaps = 18/244 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56
+R GR ++R IS + GS L G T +L T +E+V I +
Sbjct: 310 IRPDGRGLEEVRPISCEVGILPRTHGSALFTRGQTQILNVTTLGALGDEQVIDGIGDDTS 369
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y S G + R+ G RAL V+ + +
Sbjct: 370 KRYIHHYNFPGYSVGEARPMRSPGRREIGHGAL----AERALVPVIPSVEEFPYTLRLVS 425
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V++++G + ++ G+ ++L ++ + + V G + D
Sbjct: 426 EVLESNGSSSMGSVCGSTLSLMHAGVPIKKPVSGCAMGLVKDGDA---------YTILTD 476
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED+ D+D T G I +Q + S++ A L AK ++ +
Sbjct: 477 IQGMEDALGDMDFKVAGTPDG-ITAIQMDIKVDGLSREILAAALAQAKRGREFILSKMLE 535
Query: 237 VISN 240
IS
Sbjct: 536 CISE 539
Score = 111 bits (276), Expect = 1e-22, Method: Composition-based stats.
Identities = 42/230 (18%), Positives = 81/230 (35%), Gaps = 27/230 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKHGWITAEYGML 66
R + ++K A G+ LV++G+T +L TAT E V + + G +
Sbjct: 11 RSFVVETGKMAKQANGAVLVRYGETVVLVTATASAEPREGVDFFPLTVDYEEKMYAVGKI 70
Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
P R GR + R+I R +R + QI+ ++ D
Sbjct: 71 PGGFIKR------EGRPAESAILNSRLIDRPIRPLFPEGYRNDVQIVATVLSVEQDNAPE 124
Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
A + GA A G +A + G + G +++ + D
Sbjct: 125 IAGMIGASCA-------------LSISDIPFLGPIAGVRVGRIDGEFVINPTVEQREKSD 171
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
++ + ++ V+ A S++ + + I L+K Q++
Sbjct: 172 LNLTVAGSYD-AVMMVEAGANE--LSEEVVLDAILFGHEEIKRLVKFQQE 218
>gi|297583709|ref|YP_003699489.1| ribonuclease PH [Bacillus selenitireducens MLS10]
gi|297142166|gb|ADH98923.1| ribonuclease PH [Bacillus selenitireducens MLS10]
Length = 261
Score = 159 bits (401), Expect = 3e-37, Method: Composition-based stats.
Identities = 108/234 (46%), Positives = 153/234 (65%), Gaps = 1/234 (0%)
Query: 6 RQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGM 65
R +Q+R+I + K+ EGS L+ FGDT ++ +A++E++VP ++R GW+TAEY M
Sbjct: 7 RLNHQLRDIDMIPGYIKHPEGSVLISFGDTKVICSASIEDRVPPFLRGQGKGWVTAEYAM 66
Query: 66 LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125
LPR+T +R RE+ G+ GR+ EIQR+IGRALRSVV+L LG R + +DCDVIQADGGT
Sbjct: 67 LPRATESRNIRESSKGKVTGRTMEIQRLIGRALRSVVNLDLLGERTVWVDCDVIQADGGT 126
Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185
RTA+ITGA+ A+ +++ + + ++ G ++DLDY EDST
Sbjct: 127 RTASITGAFTAVALAFENLMEEGKLEENPLTDFLAAISVGVAS-DGDILLDLDYSEDSTA 185
Query: 186 DVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
DVD N VMT +G +VEVQG+ E ATFS+ ML++A++ I LI QK VI
Sbjct: 186 DVDMNIVMTGTGQLVEVQGTGEEATFSRAEMNKMLDVAEEGIGKLIDKQKAVIG 239
>gi|194333349|ref|YP_002015209.1| polynucleotide phosphorylase/polyadenylase [Prosthecochloris
aestuarii DSM 271]
gi|257096703|sp|B4S5G5|PNP_PROA2 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|194311167|gb|ACF45562.1| Polyribonucleotide nucleotidyltransferase [Prosthecochloris
aestuarii DSM 271]
Length = 734
Score = 159 bits (401), Expect = 3e-37, Method: Composition-based stats.
Identities = 49/243 (20%), Positives = 86/243 (35%), Gaps = 18/243 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
RL GR+ +++R IS+ + A GS L G+T L T TL + ++ + +
Sbjct: 334 RLDGRRLDEVRPISIELGLIPRAHGSALFTRGETQALVTLTLGTKKDAQMIDTLTDDADK 393
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + S R+ G RA+R V + I I D
Sbjct: 394 RFMLHYNFPPFSVGETGRVGGTSRREIGHGNL----AERAIRKVAPAESAFPYTIRIVSD 449
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+++++G + A++ G +A D + + + + +G A+ +
Sbjct: 450 ILESNGSSSMASVCGGALAAMDGGVPLRKPVSGIAMGLIKEGDRYAVLSD---------I 500
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T G I Q + L A ++ +
Sbjct: 501 LGNEDHLGDMDFKVAGTADG-ITACQMDIKIDGLDYHILEQALEQALHGRLHILDKMNEA 559
Query: 238 ISN 240
I
Sbjct: 560 IQE 562
Score = 109 bits (271), Expect = 5e-22, Method: Composition-based stats.
Identities = 45/235 (19%), Positives = 81/235 (34%), Gaps = 29/235 (12%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVP-----MWIRNTKHGWITAEYGMLP 67
+S+ ++K A+GS +V+ DT +L T + P + ++ + G P
Sbjct: 17 LSIETGKMAKQADGSAIVRLNDTMVLATVVSSKTPPSPNQSFFPLQVEYREKYSAAGKFP 76
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R GR + R+I RALR + QIII
Sbjct: 77 GGFFKR------EGRPSEKEILSARLIDRALRPLFPDGYYQDTQIIISVISSDQINDADV 130
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
A A+ + ++ + G + G IV+ + E D+
Sbjct: 131 LGGVAASAAIM-------------VSDIPFQNSMSEVRVGRVNGEYIVNPNINELRDSDI 177
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNEV 242
D + T++ I ++ E S+ + + I + LQ + I+ EV
Sbjct: 178 DISIGGTEN-TICMLE--GEMDEISEAEMLEAIRFGHEAIKKICALQNE-IAAEV 228
>gi|331000847|ref|ZP_08324493.1| polyribonucleotide nucleotidyltransferase [Parasutterella
excrementihominis YIT 11859]
gi|329570375|gb|EGG52108.1| polyribonucleotide nucleotidyltransferase [Parasutterella
excrementihominis YIT 11859]
Length = 735
Score = 159 bits (401), Expect = 3e-37, Method: Composition-based stats.
Identities = 47/242 (19%), Positives = 94/242 (38%), Gaps = 18/242 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +R I + V A GS L G+T L TL +E++ + +
Sbjct: 333 RIDGRDTRTVRPIEIRTGVLPRAHGSALFTRGETQALVVTTLGTKQDEQIVDGLTGEQRE 392
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y M P +TG + + R+ G + RAL +V+ + + +
Sbjct: 393 RFMLHYNMPPFATGETGRVGSPKRREIGHGRL----AKRALTAVLPNEEDFQYTMRVVSE 448
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ G ++L D ++D + + +G+ A+ +
Sbjct: 449 ICESNGSSSMASVCGGCLSLLDAGVPLKDFVAGVAMGLIKEGNKFAVLTD---------I 499
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D TD G + +Q + S++ L AK+ ++ +
Sbjct: 500 LGDEDHLGDMDFKVAGTDHG-VTALQMDIKIEGISKEIMQVALAQAKEGRMHILGKMHEA 558
Query: 238 IS 239
+
Sbjct: 559 VE 560
Score = 102 bits (253), Expect = 6e-20, Method: Composition-based stats.
Identities = 33/233 (14%), Positives = 77/233 (33%), Gaps = 27/233 (11%)
Query: 13 EISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT----KHGWITAEYGMLP 67
+ L +++ A G+ + DT +L T ++++ + T G +P
Sbjct: 28 NVRLETGEIARQASGAVICDMDDTVVLATVVAKKEIKPGQDFFPLTVDYIEKTYAAGRIP 87
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R GR + R+I R +R + QIII + +
Sbjct: 88 GGFFKR------EGRPSEKETLTSRLIDRPIRPLFPEGFFNEVQIIIHVLSVNPEVDPDI 141
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
++ A A G +AA G + ++ + + +
Sbjct: 142 PSMIAASAA-------------LAVSGVPFNGPIAAARVGYINNEYVLCPNLSQMKDSKL 188
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
D T+ ++ V+ +E S++ + +++ +I+ +++
Sbjct: 189 DLVVAGTER-AVLMVE--SEADQLSEEVMLGAVMFGHEKMQVVIEAIDELVEE 238
>gi|121609766|ref|YP_997573.1| polynucleotide phosphorylase/polyadenylase [Verminephrobacter
eiseniae EF01-2]
gi|187611331|sp|A1WLP8|PNP_VEREI RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|121554406|gb|ABM58555.1| 3' exoribonuclease [Verminephrobacter eiseniae EF01-2]
Length = 757
Score = 159 bits (401), Expect = 3e-37, Method: Composition-based stats.
Identities = 47/243 (19%), Positives = 90/243 (37%), Gaps = 18/243 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +R I + V A GS L G+T L ATL + + +
Sbjct: 317 RIDGRDTRTVRPIEIRAGVLPRAHGSALFTRGETQALAVATLGTERDAQRIDALAGEYDD 376
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y M P +TG + + R+ G + RAL +V+ + + +
Sbjct: 377 RFMLHYNMPPFATGEVGRMGSTKRREIGHGRL----AKRALVAVLPTKEEFPYTMRVVSE 432
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ G ++L D M+ + + G+ A+ +
Sbjct: 433 ITESNGSSSMASVCGGCLSLMDAGVPMKAHVAGIAMGLIKDGNRFAVLTD---------I 483
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T +G I +Q + +++ L AK+ ++ +
Sbjct: 484 LGDEDHLGDMDFKVAGTTAG-ITALQMDIKIQGITREIMQVALAQAKEARMHILGKMQQA 542
Query: 238 ISN 240
I
Sbjct: 543 IGQ 545
Score = 87.6 bits (215), Expect = 1e-15, Method: Composition-based stats.
Identities = 33/230 (14%), Positives = 72/230 (31%), Gaps = 27/230 (11%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT----KHGWITAEYGMLPR 68
+ + +++ A G+ LV DT +L T + + T G +P
Sbjct: 18 VVMETGEIARQASGAVLVSIDDTVVLATVVASRSIKPGQDFFPLTVDYIEKTYAAGKIPG 77
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
S R + R+I R LR + ++I + + A
Sbjct: 78 SFFKR------EAKPSEHETLTSRLIDRPLRPLFPQGFFNEVHLVIHTLSLNPEVDADIA 131
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+ + AL G + A G + G ++ + +D
Sbjct: 132 ALIASSAALALSGI-------------PFNGPIGAARVGYIQGEYRLNPGPTARKSSQLD 178
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
T++ ++ V+ A++ S++ + + I +++
Sbjct: 179 LVVAGTEA-AVLMVESEAQQ--LSEEIMLGAVVFGHQQGKVAIDAIHELV 225
>gi|328953964|ref|YP_004371298.1| Polyribonucleotide nucleotidyltransferase [Desulfobacca acetoxidans
DSM 11109]
gi|328454288|gb|AEB10117.1| Polyribonucleotide nucleotidyltransferase [Desulfobacca acetoxidans
DSM 11109]
Length = 711
Score = 159 bits (401), Expect = 3e-37, Method: Composition-based stats.
Identities = 46/243 (18%), Positives = 85/243 (34%), Gaps = 18/243 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +R IS + GS L G+T L ATL +E+ +
Sbjct: 324 RIDGRSYTDIRPISCEVGLLSRTHGSALFSRGETQALAVATLGTVSDEQRIETLTGDTFK 383
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G S R+ G RAL V+ I + +
Sbjct: 384 AFMLHYNFPPYSVGETRMLRGPSRREIGHGAL----AERALSRVLPQPEEFPYTIRVVSE 439
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
++ ++G + A + G +A+ D ++ + + + + AI +
Sbjct: 440 ILSSNGSSSMATVCGGSLAMMDAGIPIKAPVAGVAMGLIKEENNIAILSD---------I 490
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T +G I +Q + +++ L+ A++ ++ +
Sbjct: 491 LGDEDHLGDMDFKVAGTAAG-ITALQMDIKIGGINREIMSQALHQAREARLHILSRMNEA 549
Query: 238 ISN 240
I
Sbjct: 550 IDQ 552
Score = 94.9 bits (234), Expect = 8e-18, Method: Composition-based stats.
Identities = 44/230 (19%), Positives = 84/230 (36%), Gaps = 26/230 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGML 66
R ++ ++ A G+ ++GDT +L TA L E + + ++ G +
Sbjct: 23 RILAFEIDKMAAQASGAVFARYGDTGVLVTAVASDRLREGIDFLPLTVDYLEMSYAAGRI 82
Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
P R GR + R+I R +R + QII + +
Sbjct: 83 PGGFFRR-----EIGRPSEKETLTSRLIDRPIRPLFPKGFFHELQIIATVLSVDMENDPD 137
Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
A+ GA A +G +AA+ G + G +V+ +
Sbjct: 138 IIALNGASAA-------------LAISDIPFQGPIAAVRMGKVGGELMVNPTISQLKEST 184
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
++ ++ +V V+G AE A S++ L A + +++LQ+
Sbjct: 185 LNLIVAGSND-ALVMVEGGAELA--SEEEILEALFTAHAEMQPILRLQEQ 231
>gi|332981620|ref|YP_004463061.1| polyribonucleotide nucleotidyltransferase [Mahella australiensis
50-1 BON]
gi|332699298|gb|AEE96239.1| polyribonucleotide nucleotidyltransferase [Mahella australiensis
50-1 BON]
Length = 708
Score = 159 bits (401), Expect = 3e-37, Method: Composition-based stats.
Identities = 50/243 (20%), Positives = 90/243 (37%), Gaps = 16/243 (6%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHG 57
R GR+ +++R IS + GS L G T +LT AT +E++ + +
Sbjct: 312 RPDGRKLDEIRPISCEVGLIPRVHGSGLFTRGQTQVLTIATLGAPGDEQMLEDLSLEESK 371
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y M P STG R+ G RAL ++ I + +
Sbjct: 372 RYIHHYNMPPYSTGEAKMMRGPGRREIGHGAL----AERALEPMIPSQEEFPYTIRLVSE 427
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
V+ ++G T A++ G+ +AL D ++ + + ++ + D+
Sbjct: 428 VMSSNGSTSQASVCGSTLALMDAGVPIKAPVAGVAMGLMKDEQSDKVA-------ILTDI 480
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T G + +Q + + A L A + ++ +V
Sbjct: 481 QGLEDFFGDMDFKVAGTADG-VTAIQMDIKVKGIDRSILEAALKQAYEGRMFIMNKMLEV 539
Query: 238 ISN 240
IS
Sbjct: 540 ISE 542
Score = 106 bits (263), Expect = 4e-21, Method: Composition-based stats.
Identities = 38/234 (16%), Positives = 82/234 (35%), Gaps = 27/234 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKHGWITAEYGML 66
R++ + +++ A G+ LV++GDT + T E + + + G +
Sbjct: 12 RKLRIETGKLAEQANGAVLVRYGDTTVFVAVTASKEPREGIDFFPLSVDFEEKLYAVGKI 71
Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
P R G+ ++ R+I R +R + Q++ ++ D
Sbjct: 72 PGGYIKR------EGKPTEKAILTSRLIDRPIRPLFPKGYRNDVQVVAMPLSVEPDVPPD 125
Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
A+ GA A +G + A+ G++ G +++ D +
Sbjct: 126 VVAMVGASAA-------------LSISDIPFEGPIGAVLVGLVDGELVINPDAAQRERSR 172
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
+ T I+ V+ A +D + + I L+ Q+ ++S
Sbjct: 173 LHLTVAGTKD-AIMMVEAGANEVP--EDKILEAIMFGHEHIKQLVAFQEQIVSE 223
>gi|238927868|ref|ZP_04659628.1| ribonuclease PH [Selenomonas flueggei ATCC 43531]
gi|238884288|gb|EEQ47926.1| ribonuclease PH [Selenomonas flueggei ATCC 43531]
Length = 248
Score = 159 bits (401), Expect = 3e-37, Method: Composition-based stats.
Identities = 111/240 (46%), Positives = 153/240 (63%), Gaps = 5/240 (2%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R R+ +Q+R + + R +YA+GS L++ G T ++ AT+EE+VP +++ T GW+TA
Sbjct: 3 RRDLRRADQLRPVRIERGYQRYADGSALIETGHTRVVCAATVEERVPFFLKGTGTGWVTA 62
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
EY MLP + R REAV G Q GR+QEIQR+IGRALR+VVD ALG R I IDCDV+QA
Sbjct: 63 EYSMLPGAGAERTAREAVRGHQSGRTQEIQRLIGRALRAVVDTKALGERTIHIDCDVLQA 122
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML-CGYPIVDLDYG 180
DGGTRTA++TGA+VAL + F ++ +VAA+S G+ P++DL Y
Sbjct: 123 DGGTRTASVTGAFVALVEACASFYAKRGIF----PVRDYVAAVSVGINAENEPLLDLCYE 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
EDS VD N VMT +G VEVQG+ E F++ A+L+L + I LI QK + +
Sbjct: 179 EDSAAMVDMNIVMTGAGAFVEVQGTGEGRAFARKELNALLDLGEQGIRTLIDQQKVALGD 238
>gi|285017590|ref|YP_003375301.1| ribonuclease ph protein [Xanthomonas albilineans GPE PC73]
gi|283472808|emb|CBA15313.1| hypothetical ribonuclease ph protein [Xanthomonas albilineans]
Length = 241
Score = 159 bits (401), Expect = 4e-37, Method: Composition-based stats.
Identities = 117/228 (51%), Positives = 156/228 (68%), Gaps = 2/228 (0%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R SGR Q+R + + R +++AEGS LV FGDT +L A+++ +VP ++R GW+TA
Sbjct: 5 RPSGRTAEQLRPVRIERAFTRHAEGSVLVSFGDTRVLCNASVDNRVPGFLRGKGEGWVTA 64
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
EYGMLPR+T +R +REA G+QGGR+ EIQR+IGRALR+ VD +ALG R I +DCDV+QA
Sbjct: 65 EYGMLPRATHSRSEREAARGKQGGRTLEIQRLIGRALRACVDRNALGERTITLDCDVLQA 124
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
DGGTRTAAITGA+VAL D + + V+ G VAA+S G+ G P++DLDY E
Sbjct: 125 DGGTRTAAITGAYVALVDAVNWLR--QRGELKKPVVLGAVAAVSVGIYRGVPVLDLDYAE 182
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIAD 229
DS D D N VM D G +E+QG+AE F +D A+L LA+ I +
Sbjct: 183 DSDCDTDMNVVMNDGGGFIELQGTAEGHAFRRDELDALLGLAERGIGE 230
>gi|319403623|emb|CBI77208.1| polyribonucleotide nucleotidyltransferase [Bartonella rochalimae
ATCC BAA-1498]
Length = 733
Score = 159 bits (401), Expect = 4e-37, Method: Composition-based stats.
Identities = 44/243 (18%), Positives = 86/243 (35%), Gaps = 18/243 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR + +R I + GS L G+T L ATL +E+ +
Sbjct: 317 RIDGRNLSDVRSIQSEVGILPRTHGSALFTRGETQALVIATLGTGEDEQYIDSLTGMYKE 376
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + + R+ G + RA+ ++ I +
Sbjct: 377 TFLLHYNFPPFSVGEIGRIGSPGRREIGHGKL----AWRAIHPMLPTKESFPYTIRTVSE 432
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A + G +AL D + + + + +G A+ +
Sbjct: 433 ITESNGSSSMATVCGTSLALMDAGVPLANPVAGIAMGLIKEGKQFAVLSD---------I 483
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T++G I +Q + +++ L AKD ++
Sbjct: 484 LGDEDHLGDMDFKVAGTENG-ITSLQMDIKIDGITEEIMKIALAQAKDGRIHILNEMAKA 542
Query: 238 ISN 240
++
Sbjct: 543 LAR 545
Score = 102 bits (255), Expect = 3e-20, Method: Composition-based stats.
Identities = 36/228 (15%), Positives = 70/228 (30%), Gaps = 27/228 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPM----WIRNTKHGWITAEYGML 66
R + L +++ A+G+ L +G+T +L T + + + G +
Sbjct: 14 RPLILETGKIARQADGAILATYGETVVLATVVSAKTPKPDQNFFPLTVNYQEKNYAVGKI 73
Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
P R R I R+I R +R + Q+I+ +
Sbjct: 74 PGGYLKR------ESRPSESETLISRLIDRPIRPLFVDGYKNDTQVIVSVIQHDLENNPD 127
Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
AI + A G +AA G G I++ + E
Sbjct: 128 ILAIIASSAA-------------LTLSGIPFMGPIAAARIGYCNGQYILNPNIDEMPESK 174
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
+D T++ ++ V+ A +D + + +I
Sbjct: 175 LDLVVAGTEN-AVLMVESEAHE--LPEDVMLDAVMFGQKSFQPVINAI 219
>gi|313895897|ref|ZP_07829451.1| tRNA nucleotidyltransferase [Selenomonas sp. oral taxon 137 str.
F0430]
gi|312975322|gb|EFR40783.1| tRNA nucleotidyltransferase [Selenomonas sp. oral taxon 137 str.
F0430]
Length = 248
Score = 159 bits (401), Expect = 4e-37, Method: Composition-based stats.
Identities = 103/241 (42%), Positives = 147/241 (60%), Gaps = 3/241 (1%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R R+ +Q+R + + R +Y GS L++ G T ++ +A++EE+VP +++ + GW+TA
Sbjct: 3 RRDLRRHDQLRPVRIERGYQRYPAGSALIEMGHTRVVCSASVEERVPFFLKGSGTGWVTA 62
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
EY MLP + R REA+ GRQ GR+QEIQR+IGRALR+VVD ALG R I IDCDV+QA
Sbjct: 63 EYAMLPGAGTERTAREAMRGRQTGRTQEIQRLIGRALRAVVDTRALGERTIHIDCDVVQA 122
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
DGGTRTA+ITGA+VAL + + V A P++D+ Y E
Sbjct: 123 DGGTRTASITGAFVALVEACATFYTKRG---VFPVRDYTAAVSVGIGAENTPLLDICYEE 179
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
D+ VD N VMT +G +EVQG+ E FS+ A+L+L + I +LI +QK +
Sbjct: 180 DAQAMVDMNLVMTGAGSFIEVQGTGEGRAFSRAEMNALLDLGERGIRELIDVQKRALGET 239
Query: 242 V 242
+
Sbjct: 240 L 240
>gi|159045537|ref|YP_001534331.1| polynucleotide phosphorylase/polyadenylase [Dinoroseobacter shibae
DFL 12]
gi|187610298|sp|A8LKE7|PNP_DINSH RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|157913297|gb|ABV94730.1| polyribonucleotide nucleotidyltransferase [Dinoroseobacter shibae
DFL 12]
Length = 711
Score = 159 bits (401), Expect = 4e-37, Method: Composition-based stats.
Identities = 44/243 (18%), Positives = 88/243 (36%), Gaps = 17/243 (6%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR + +R I + GS L G+T L TL +E+ +
Sbjct: 318 RIDGRALDTVRPIQSEVGILPRTHGSALFTRGETQGLVVTTLGTGDDEQFIDALHGNFKS 377
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + R+ G + RAL++V+ + I + +
Sbjct: 378 NFLLHYNFPPYSVGEVGRFGPPGRREIGHGKL----AWRALQAVLPAATDFPYTIRLVSE 433
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ G +++ D ++ + +L+ + + D+
Sbjct: 434 ITESNGSSSMASVCGGSLSMMDAGVPLKAPVAGVAMGLILEEDGS--------YAVLTDI 485
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T+ G I +Q + A + + L AK ++
Sbjct: 486 LGDEDHLGDMDFKVAGTEEG-ITSLQMDIKVAGITPEIMEKALEQAKAGRLHILGEMSKA 544
Query: 238 ISN 240
+S
Sbjct: 545 LSE 547
Score = 98.8 bits (244), Expect = 6e-19, Method: Composition-based stats.
Identities = 29/238 (12%), Positives = 67/238 (28%), Gaps = 34/238 (14%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT----KHGWITAEYGMLPR 68
++L +++ A+G + +G+T ++ T + G +P
Sbjct: 16 LTLETGKIARQADGCVIATYGETSVMAAVTYARSQKPGQDFFPLTVHYNEKYYAAGKIPG 75
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
R R + R+I R +R + +I +
Sbjct: 76 GFFKR------EARPTEKETLTSRLIDRPIRPLFVDGFKNEVLVICTVLSHDLENDPDIV 129
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDS----- 183
A+ A A G +A G G +++ +
Sbjct: 130 AMIAASAA-------------LTISGVPFMGPIAGARVGYEDGEYVLNPVVDDMHDLRNN 176
Query: 184 -TIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
+D T ++ V+ A S+ + +++ +I L + ++
Sbjct: 177 PDQRLDLVVAGTKD-AVMMVESEAYE--LSEAEMLGAVKFGHEQMQPVIDLIIE-LAE 230
>gi|148651980|ref|YP_001279073.1| polynucleotide phosphorylase/polyadenylase [Psychrobacter sp.
PRwf-1]
gi|187611275|sp|A5WBT2|PNP_PSYWF RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|148571064|gb|ABQ93123.1| Polyribonucleotide nucleotidyltransferase [Psychrobacter sp.
PRwf-1]
Length = 704
Score = 159 bits (401), Expect = 4e-37, Method: Composition-based stats.
Identities = 46/237 (19%), Positives = 88/237 (37%), Gaps = 10/237 (4%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R+ GR + +R + + V Y GS L G+T L T TL + + ++ G I
Sbjct: 320 RIDGRDLDTVRALDIQVGVLPYTHGSALFTRGETQALVTTTLGNSRDVNLIDSLAGTIQD 379
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
+ + V G R R+ R +++++ S I + ++ ++
Sbjct: 380 HFMLHYNFPHYSVGETGREGVPKRREIGHGRLARRGVQAMLPDSDRFPYVIRVVSEITES 439
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
+G + A++ GA +AL D ++ + V +G A+ + E
Sbjct: 440 NGSSSMASVCGASLALMDAGVPLKAPVAGIAMGLVKEGDRFAVLSD---------ILGDE 490
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
D D+D T G I +Q + + D L A ++ +V+
Sbjct: 491 DHLGDMDFKVAGTKDG-ITALQMDIKIEGITSDIMEKALEQAHAGRIHILNAMNEVL 546
Score = 69.1 bits (167), Expect = 5e-10, Method: Composition-based stats.
Identities = 38/228 (16%), Positives = 71/228 (31%), Gaps = 28/228 (12%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGMLPR 68
+ + +++ A S LV G +L +E + + G +P
Sbjct: 18 VVIETGRIARQAN-SVLVHMGGVSVLVAVVVKSDAKEGQNFFPLTVNYQEKMYAAGKIPG 76
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
+ G R GR R+I R +R + + QI A
Sbjct: 77 AYGKR------EGRPTEFETLTSRLIDRPIRPLFPEGYVNEIQITATVISSDKKHYADIA 130
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+ GA A G + G + G +++ E + D+D
Sbjct: 131 AMIGASAA-------------LSISDAPFNGPIGGARVGFINGEYVLNPSIEELKSSDLD 177
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
T S ++ V+ +E A S+D + ++ +I +
Sbjct: 178 LVVAGTKS-AVLMVE--SEAAELSEDQMLGAVLYGHEQQQIVIDNIAE 222
>gi|326389429|ref|ZP_08210996.1| polyribonucleotide nucleotidyltransferase [Thermoanaerobacter
ethanolicus JW 200]
gi|325994434|gb|EGD52859.1| polyribonucleotide nucleotidyltransferase [Thermoanaerobacter
ethanolicus JW 200]
Length = 700
Score = 159 bits (401), Expect = 4e-37, Method: Composition-based stats.
Identities = 48/244 (19%), Positives = 88/244 (36%), Gaps = 18/244 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56
+R+ GR + +R I V GS + G T +LT AT + ++ I + +
Sbjct: 312 IRVDGRGLDDIRPIWCEVGVLPRTHGSAIFTRGQTQVLTVATLGALGDIQILDGIGDEEA 371
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P S G R+ G RAL V+ I +
Sbjct: 372 KRYMHHYNFPPYSVGEVRPLRGPGRREIGHGAL----AERALEPVIPSEEEFPYTIRLVS 427
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V+ ++G T A++ G+ +AL D ++ + + +G V ++
Sbjct: 428 EVLSSNGSTSQASVCGSTLALMDAGVPIKAPVAGVAMGLIKEGDVVSVLTD--------- 478
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T+ G I +Q + ++ L A+ ++ +
Sbjct: 479 IQGIEDFLGDMDFKVAGTEKG-ITAIQMDIKIPGIDKEILKMALEKARRGRLYILNKMLE 537
Query: 237 VISN 240
VI
Sbjct: 538 VIKE 541
Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats.
Identities = 40/234 (17%), Positives = 85/234 (36%), Gaps = 27/234 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKHGWITAEYGML 66
R++ + V++ A G+ VK+GDT +L TA E + + ++ G +
Sbjct: 13 RKLLVQIGKVAQQANGAAWVKYGDTVVLVTACASKEPREGIDFFPLTVEYEERLYSVGKI 72
Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
P R G+ ++ R+I R +R + Q+I + D
Sbjct: 73 PGGFIKR------EGKPSEKAILSARLIDRPIRPLFPHGYRNDVQVIATVLSVDPDVQPE 126
Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
A+ G+ VA G A++ G++ G I++ ++ +
Sbjct: 127 IVAMIGSSVA-------------LSISDIPFNGPTGAVAVGLVDGQFIINPNHEQREKSL 173
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
+ T IV V+ A+ ++ + A + I +++ + ++
Sbjct: 174 MHLVVSGTKD-AIVMVEAGAKE--IPEETMLDAIMYAHEYIKQIVEFIEGIVKE 224
>gi|319779764|ref|YP_004139240.1| polyribonucleotide nucleotidyltransferase [Mesorhizobium ciceri
biovar biserrulae WSM1271]
gi|317165652|gb|ADV09190.1| polyribonucleotide nucleotidyltransferase [Mesorhizobium ciceri
biovar biserrulae WSM1271]
Length = 715
Score = 159 bits (401), Expect = 4e-37, Method: Composition-based stats.
Identities = 45/241 (18%), Positives = 87/241 (36%), Gaps = 18/241 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +R+I V GS L G+T L ATL +E+ +
Sbjct: 317 RIDGRDLKTVRKIVSEVGVLPRTHGSALFTRGETQALVVATLGTGEDEQYVDSLTGMYKE 376
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + + R+ G + RA+R ++ + + + +
Sbjct: 377 KFLLHYNFPPYSVGETGRMGSPGRREIGHGKL----AWRAIRPMLPSADQFPYTLRVVSE 432
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A + G +AL D + + + +G A+ +
Sbjct: 433 ITESNGSSSMATVCGTSLALMDAGVPLAKPVAGIAMGLIKEGERFAVLSD---------I 483
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T +G I +Q + +++ L+ AKD ++
Sbjct: 484 LGDEDHLGDMDFKVAGTANG-ITSLQMDIKIEGITEEIMKIALDQAKDGRQHILGEMAHA 542
Query: 238 I 238
+
Sbjct: 543 L 543
Score = 111 bits (278), Expect = 7e-23, Method: Composition-based stats.
Identities = 33/228 (14%), Positives = 69/228 (30%), Gaps = 27/228 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----HGWITAEYGML 66
R + L +++ A+G+ L +G+T +L T ++ + + T G +
Sbjct: 14 RPLILETGKIARQADGAVLATYGETKVLATVVSMKEPKPGLDFFPLTVNYQEKTYAAGKI 73
Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
P R GR + + R+I R +R + QI++ +
Sbjct: 74 PGGYFKR------EGRPSEKETLVSRLIDRPIRPLFASGYKNDTQIVVTVVQHDLENDPD 127
Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
+I A G V G + G +++ E
Sbjct: 128 ILSIVATSAA-------------LTLSGVPFMGPVGGARVGYINGEYVLNPHVDEMQESK 174
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
+D T ++ V+ A+ ++ + +I
Sbjct: 175 LDLVVAGTAD-AVLMVESEAKE--LGEELMLGAVMFGHKGFQPVIDAI 219
>gi|229918348|ref|YP_002886994.1| ribonuclease PH [Exiguobacterium sp. AT1b]
gi|229469777|gb|ACQ71549.1| ribonuclease PH [Exiguobacterium sp. AT1b]
Length = 249
Score = 159 bits (401), Expect = 4e-37, Method: Composition-based stats.
Identities = 117/239 (48%), Positives = 153/239 (64%), Gaps = 4/239 (1%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR R+ +++R + + V+K+AEGS L+ GDT ++ TAT+EE+VP ++R K GWI
Sbjct: 1 MR-DARRFDELRPVEIVPHVNKHAEGSVLISIGDTKVICTATVEERVPNFLRGKKQGWIN 59
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEY MLPR+TG+R RE+V G+Q GR+ EIQR+IGR+LRSVVDL LG R I +DCDVIQ
Sbjct: 60 AEYAMLPRATGDRTVRESVRGKQSGRTMEIQRLIGRSLRSVVDLERLGERTIWVDCDVIQ 119
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+ITG + AL + + +K VAAIS G +DLDY
Sbjct: 120 ADGGTRTASITGGFCALVLAVDRLIR--QGKLEDTPIKEGVAAISVGRTDELV-LDLDYL 176
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
ED+ +VD N VMT SG VEVQG+ E ATF+ ML LA+ I L K + +
Sbjct: 177 EDAAAEVDMNVVMTASGRFVEVQGTGEEATFTLQEMNEMLALAQHGIESLFKTAEAALG 235
>gi|304393828|ref|ZP_07375753.1| polyribonucleotide nucleotidyltransferase [Ahrensia sp. R2A130]
gi|303294027|gb|EFL88402.1| polyribonucleotide nucleotidyltransferase [Ahrensia sp. R2A130]
Length = 709
Score = 159 bits (401), Expect = 4e-37, Method: Composition-based stats.
Identities = 44/243 (18%), Positives = 86/243 (35%), Gaps = 18/243 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR + +R+I + GS L G+T + ATL +E+ + T
Sbjct: 317 RIDGRDLDTVRQIESQVGILPRTHGSALFTRGETQAIVVATLGTGDDEQFIDALTGTYKE 376
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + S R+ G + RA+++V+ + +
Sbjct: 377 NFLLHYNFPPYSVGETGRIGFTSRREIGHGKL----AWRAVKAVLPSKEDFPYTLRAVSE 432
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A + G +A D ++ + + +G A+ +
Sbjct: 433 ITESNGSSSMATVCGTSLAFMDAGVPLKAPVAGIAMGLIKEGDDFAVLSD---------I 483
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T G I +Q + ++D L AK ++
Sbjct: 484 LGDEDHLGDMDFKVAGTAEG-ITSLQMDIKITGITEDIMKIALEQAKGGRETILNEMSKA 542
Query: 238 ISN 240
++
Sbjct: 543 LTE 545
Score = 114 bits (284), Expect = 1e-23, Method: Composition-based stats.
Identities = 34/235 (14%), Positives = 75/235 (31%), Gaps = 28/235 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----HGWITAEYGML 66
R ++L V++ A+GS +V +G+T ++ E+K + + G +
Sbjct: 16 RPLTLEAGQVARQADGSVIVTYGETTVMCNVVSEKKPKPHLDFFPLTVNYIEKAYAAGKI 75
Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
P R R + R+I R +R + Q+ +
Sbjct: 76 PGGFFKR------EARPSENETLVCRLIDRPIRPLFAEGYKNDTQVTCTVLSHDMENNPD 129
Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
A+ A G +A G++ G +++ + E D
Sbjct: 130 IVAMIATSAA-------------LTISGVPFSGPIAGARVGLIDGDYVLNPNVDEMPESD 176
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
+D T ++ V+ +E S++ + + +I ++ +
Sbjct: 177 LDLIVAGTTD-AVLMVE--SEANVLSEEVMLGAVMFGHEEFQPVIDAVIQ-LAEK 227
>gi|121535268|ref|ZP_01667082.1| Polyribonucleotide nucleotidyltransferase [Thermosinus
carboxydivorans Nor1]
gi|121306153|gb|EAX47081.1| Polyribonucleotide nucleotidyltransferase [Thermosinus
carboxydivorans Nor1]
Length = 699
Score = 159 bits (401), Expect = 4e-37, Method: Composition-based stats.
Identities = 45/244 (18%), Positives = 91/244 (37%), Gaps = 18/244 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56
+R GR+ +++R IS + + GS L G T +LT T +E++ + +
Sbjct: 310 VRPDGRKLDEIRPISCEVGLLRRTHGSGLFTRGQTQVLTVTTLGAIGDEQILDGLGVEES 369
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y S G R+ G RAL V+ I +
Sbjct: 370 KRYMHHYNFPAFSVGETRPARGPGRREIGHGAL----AERALLPVIPPETEFPYTIRLVS 425
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V++++G T ++ G+ ++L D ++ + + V +G + D
Sbjct: 426 EVLESNGSTSMGSVCGSTLSLMDAGVPIKAPVSGVAMGLVKEGD---------HYTILTD 476
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED+ D+D T G + +Q + + +++ L A+ ++ +
Sbjct: 477 IQGIEDALGDMDFKVAGTAKG-VTAIQMDIKISGITKEILADALEQARRGRLFILDKMLE 535
Query: 237 VISN 240
VI
Sbjct: 536 VIKE 539
Score = 113 bits (281), Expect = 3e-23, Method: Composition-based stats.
Identities = 37/234 (15%), Positives = 80/234 (34%), Gaps = 27/234 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEK----VPMWIRNTKHGWITAEYGML 66
R + + ++K A G+ L+++GDT +L TAT + + + + G +
Sbjct: 11 RALVVETGKMAKQANGAVLIRYGDTAVLVTATASAEPRQGIDFFPLTVDYEERLYSVGKI 70
Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
P R GR + R+I R +R + ++ + D
Sbjct: 71 PGGFIKR------EGRPSEAAILAGRLIDRPIRPLFAEGFRNDVHVVATVLSVDQDNPPD 124
Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
A+ GA A G + + G + G I++ + D
Sbjct: 125 IPAMIGASCA-------------LSISDIPFNGPIGGVRVGRVDGQFIINPTVEQQERSD 171
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
++ T ++ V+ A ++ + D I +++ Q+ +++
Sbjct: 172 LNLVVAGTKD-AVLMVEAGANEVP--EEAILDAITFGHDVIREIVAFQEKIVAE 222
>gi|240016088|ref|ZP_04722628.1| polynucleotide phosphorylase/polyadenylase [Neisseria gonorrhoeae
FA6140]
Length = 706
Score = 159 bits (401), Expect = 4e-37, Method: Composition-based stats.
Identities = 46/242 (19%), Positives = 93/242 (38%), Gaps = 18/242 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +R +++ V GS L G+T L ATL +E++ +
Sbjct: 316 RIDGRDTRTVRPLNIQTGVLPRTHGSALFTRGETQALAVATLGTSRDEQIIDALSGEYTD 375
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P STG + A R+ G + RAL +V+ S + + +
Sbjct: 376 RFMLHYNFPPYSTGEVGRMGAPKRREIGHGRL----AKRALLAVLPKPEDFSYTMRVVSE 431
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ G ++L ++ + +L+G+ A+ +
Sbjct: 432 ITESNGSSSMASVCGGCLSLLSAGVPLKAHVAGIAMGLILEGNKFAVLTD---------I 482
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T G + +Q + +++ L AK+ ++ K
Sbjct: 483 LGDEDHLGDMDFKVAGTTEG-VTALQMDIKIQGITKEIMQIALAQAKEARLHILDQMKAA 541
Query: 238 IS 239
++
Sbjct: 542 VA 543
Score = 87.2 bits (214), Expect = 2e-15, Method: Composition-based stats.
Identities = 35/228 (15%), Positives = 72/228 (31%), Gaps = 27/228 (11%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT----KHGWITAEYGMLPR 68
++L +++ A + V GDT + T ++V + G +P
Sbjct: 16 VTLETGEIARQAAAAVKVSMGDTVVFVAVTTNKEVKEGQDFFPLAVDYLERNYAAGKIPG 75
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
R G+Q + R+I R +R + QI+ + + +
Sbjct: 76 GFFKR------EGKQSEKEILTSRLIDRPIRPLFPEGFYHDIQIVAMVVSVDPEIDSDIP 129
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+ GA A G + A G + G +++ E + +D
Sbjct: 130 AMLGASAA-------------LVLSGVPFAGPIGAARVGYINGVYVLNPTKAELAKSQLD 176
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
T ++ V+ A+ +D + D++ I +
Sbjct: 177 LVVAGTSK-AVLMVESEAKI--LPEDVMLGAVVYGHDQMQVAINAINE 221
>gi|325142036|gb|EGC64468.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
961-5945]
gi|325197978|gb|ADY93434.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
G2136]
Length = 706
Score = 159 bits (401), Expect = 4e-37, Method: Composition-based stats.
Identities = 46/242 (19%), Positives = 93/242 (38%), Gaps = 18/242 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +R +++ V GS L G+T L ATL +E++ +
Sbjct: 316 RIDGRDTRTVRPLNIQTGVLPRTHGSALFTRGETQALAVATLGTSRDEQIIDALSGEYTD 375
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P STG + A R+ G + RAL +V+ S + + +
Sbjct: 376 RFMLHYNFPPYSTGEVGRMGAPKRREIGHGRL----AKRALLAVLPKPEDFSYTMRVVSE 431
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ G ++L ++ + +L+G+ A+ +
Sbjct: 432 ITESNGSSSMASVCGGCLSLLSAGVPLKAHVAGIAMGLILEGNKFAVLTD---------I 482
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T G + +Q + +++ L AK+ ++ K
Sbjct: 483 LGDEDHLGDMDFKVAGTTEG-VTALQMDIKIQGITKEIMQIALAQAKEARLHILDQMKAA 541
Query: 238 IS 239
++
Sbjct: 542 VA 543
Score = 89.5 bits (220), Expect = 4e-16, Method: Composition-based stats.
Identities = 37/228 (16%), Positives = 75/228 (32%), Gaps = 27/228 (11%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGMLPR 68
++L +++ A + V GDT +L T ++E + + T G +P
Sbjct: 16 VTLETGEIARQAAAAVKVSMGDTVVLVAVTTNKEVKEGQDFFPLTVDYLERTYAAGKIPG 75
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
R G+Q + R+I R +R + QI+ + + +
Sbjct: 76 GFFKR------EGKQSEKEILTSRLIDRPIRPLFPEGFYHDIQIVAMVVSVDPEIDSDIP 129
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+ GA A G + A G + G +++ E + +D
Sbjct: 130 AMLGASAA-------------LVLSGVPFAGPIGAARVGYINGVYVLNPTKAELAKSQLD 176
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
T ++ V+ A+ +D + D++ I +
Sbjct: 177 LVVAGTSK-AVLMVESEAKI--LPEDVMLGAVVYGHDQMQVAINAINE 221
>gi|288959704|ref|YP_003450045.1| polyribonucleotide nucleotidyltransferase [Azospirillum sp. B510]
gi|288912012|dbj|BAI73501.1| polyribonucleotide nucleotidyltransferase [Azospirillum sp. B510]
Length = 711
Score = 159 bits (401), Expect = 4e-37, Method: Composition-based stats.
Identities = 43/241 (17%), Positives = 85/241 (35%), Gaps = 18/241 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +R I V A GS L G+T L TL +E++ +
Sbjct: 321 RIDGRDTKTVRPIVSEVGVLPRAHGSALFTRGETQALVVTTLGTSQDEQIIDALEGEYRE 380
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + + R+ G + RA+ ++ + + +
Sbjct: 381 HFMLHYNFPPYSVGEAGRMGSPGRREIGHGKL----AWRAIHPLLPKKEDFPYTLRVVSE 436
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
V +++G + A + G ++L D + + + + H A+ +
Sbjct: 437 VTESNGSSSMATVCGTSLSLMDAGAPLARPVAGIAMGLIKEDHGFAVLSD---------I 487
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T+ G + +Q + + +++ L AKD ++
Sbjct: 488 LGDEDHLGDMDFKVAGTEVG-VTALQMDIKITSITEEIMKIALGQAKDGRLHILGEMAKA 546
Query: 238 I 238
+
Sbjct: 547 L 547
Score = 114 bits (286), Expect = 9e-24, Method: Composition-based stats.
Identities = 44/257 (17%), Positives = 83/257 (32%), Gaps = 42/257 (16%)
Query: 4 SGRQENQM-----------REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEE----KV 47
GR+E+ R++ L +++ A G+ LV +GDT +L TA + V
Sbjct: 3 DGRKESMFTVHRKEIEWGGRKLVLETGKIARQANGAVLVTYGDTTVLCTAVAAKAPKPGV 62
Query: 48 PMWIRNTKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSAL 107
+ + G +P R GR + + R+I R +R +
Sbjct: 63 DFFPLTVNYQEKAFAAGKIPGGFFKR------EGRPTEKETLVSRLIDRPIRPLFADGFR 116
Query: 108 GSRQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCG 167
Q+I + ++ GA A G + A G
Sbjct: 117 NETQVICTVLSHDLENDPDIVSMVGASAA-------------LTISGIPFLGPIGAARVG 163
Query: 168 MLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKD-- 225
G I++ + D+D T G ++ V+ A+ +++ +
Sbjct: 164 YKNGQYILNPTMDQVEDTDLDLVVAGTTEG-VLMVESEAKE--LTEEVMLGAVMFGHSNF 220
Query: 226 --RIADLIKLQKDVISN 240
I +I L ++
Sbjct: 221 QPVINMIIDLAEEAAKE 237
>gi|302872107|ref|YP_003840743.1| polyribonucleotide nucleotidyltransferase [Caldicellulosiruptor
obsidiansis OB47]
gi|302574966|gb|ADL42757.1| polyribonucleotide nucleotidyltransferase [Caldicellulosiruptor
obsidiansis OB47]
Length = 701
Score = 159 bits (401), Expect = 4e-37, Method: Composition-based stats.
Identities = 51/241 (21%), Positives = 89/241 (36%), Gaps = 17/241 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHG 57
R GR+ +++R + + GS L K G T +LT AT E + + +
Sbjct: 313 RPDGRKFDEIRPLYAEVGILPRTHGSALFKRGYTQVLTVATLGTKGEMQFLDGLEEEEAK 372
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P STG R+ G RAL V+ I + +
Sbjct: 373 RYMHHYNFPPFSTGESKPIRGPGRREIGHGAL----AERALEPVIPSEDEFPYTIRLVSE 428
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
V+ ++G T A++ G+ +AL D ++ + + K + I + D+
Sbjct: 429 VLTSNGSTSQASVCGSTLALMDAGVPIKAPVAGISIGLITKDDDSFI--------LLTDI 480
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T G I +Q + +++ L AK+ ++ + V
Sbjct: 481 QGIEDFFGDMDFKVAGTREG-ITAIQLDIKIHGLTREIIEKALYQAKEARLKILDFMQTV 539
Query: 238 I 238
I
Sbjct: 540 I 540
Score = 108 bits (269), Expect = 7e-22, Method: Composition-based stats.
Identities = 37/234 (15%), Positives = 81/234 (34%), Gaps = 27/234 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVP----MWIRNTKHGWITAEYGML 66
RE+S + A G+ L ++GDT +L TA EK + + G +
Sbjct: 13 RELSFEIGKYALLANGAVLARYGDTAVLVTACASEKPREGINFFPLTVDYEERLYSVGKI 72
Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
P R G+ ++ R+I R +R + +I + D
Sbjct: 73 PGGFIKR------EGKPSEKAILSARLIDRPIRPLFPKDFYHDVSVIATVLSVDPDNPPD 126
Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
A+ G+ VA +G ++ G + G +++ E
Sbjct: 127 VLAMLGSSVA-------------LSISDIPFEGPTGSVLVGYVDGKIVINPTAKEREVSK 173
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
+ T ++ ++ A+ +D + +A++ I +++ ++++
Sbjct: 174 LHLVVSGTKD-RVMMIEAGAKEVP--EDIMIEAILIAQEEIKKIVEFIEEIVKE 224
>gi|171463523|ref|YP_001797636.1| Polyribonucleotide nucleotidyltransferase [Polynucleobacter
necessarius subsp. necessarius STIR1]
gi|226702675|sp|B1XUJ5|PNP_POLNS RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|171193061|gb|ACB44022.1| Polyribonucleotide nucleotidyltransferase [Polynucleobacter
necessarius subsp. necessarius STIR1]
Length = 722
Score = 159 bits (401), Expect = 4e-37, Method: Composition-based stats.
Identities = 47/243 (19%), Positives = 95/243 (39%), Gaps = 18/243 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +R I + V GS L G+T L ATL +E++ +
Sbjct: 316 RIDGRDTRTVRPIEIRNGVLPRTHGSALFTRGETQALVVATLGTARDEQIIDVLEGEYRD 375
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y M P +TG + + R+ G + RAL V+ + + I + +
Sbjct: 376 RFMFHYNMPPFATGETGRVGSPKRREIGHGRL----AKRALIPVLPSAEDFAYSIRVVSE 431
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ G +A+ D ++ + +L G+ A+ +
Sbjct: 432 ITESNGSSSMASVCGGCLAMMDAGVPVKAHVAGVAMGLILDGNRFAVLTD---------I 482
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T +G I +Q + +++ L AK+ ++ ++
Sbjct: 483 LGDEDHLGDMDFKVAGTANG-ITALQMDIKVQGITKEIMQVALAQAKEGRLHILSKMQEA 541
Query: 238 ISN 240
+ +
Sbjct: 542 MGS 544
Score = 79.9 bits (195), Expect = 3e-13, Method: Composition-based stats.
Identities = 40/230 (17%), Positives = 79/230 (34%), Gaps = 27/230 (11%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPM----WIRNTKHGWITAEYGMLPR 68
+++ +++ A G+ +V DT ++ T + + + T G +P
Sbjct: 18 VTMETGEIARQAGGAVIVNVDDTVVMGTVVASKSAKPGQSFFPLTVDYLEKTYAAGKIPG 77
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
R GR I R+I R LR + L Q+++ I D +
Sbjct: 78 GFFRR------EGRPSEGETLISRLIDRPLRPLFPEGFLNEVQVVVHVLSINPDVPSDIP 131
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+ A AL V A G G +++ E +T ++D
Sbjct: 132 ALIAASAALAVSSIPFAG-------------PVGAARVGYANGQYLLNPTRTEQATSELD 178
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
T + ++ V+ A + S++ + D++ I D++
Sbjct: 179 LIVAGTQA-AVLMVESEANQ--LSEEVMLGAVVYGHDQMQTAINAINDLV 225
>gi|240112443|ref|ZP_04726933.1| polynucleotide phosphorylase/polyadenylase [Neisseria gonorrhoeae
MS11]
gi|240117467|ref|ZP_04731529.1| polynucleotide phosphorylase/polyadenylase [Neisseria gonorrhoeae
PID1]
gi|240125275|ref|ZP_04738161.1| polynucleotide phosphorylase/polyadenylase [Neisseria gonorrhoeae
SK-92-679]
Length = 706
Score = 159 bits (401), Expect = 4e-37, Method: Composition-based stats.
Identities = 46/242 (19%), Positives = 93/242 (38%), Gaps = 18/242 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +R +++ V GS L G+T L ATL +E++ +
Sbjct: 316 RIDGRDTRTVRPLNIQTGVLPRTHGSALFTRGETQALAVATLGTSRDEQIIDALSGEYTD 375
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P STG + A R+ G + RAL +V+ S + + +
Sbjct: 376 RFMLHYNFPPYSTGEVGRMGAPKRREIGHGRL----AKRALLAVLPKPEDFSYTMRVVSE 431
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ G ++L ++ + +L+G+ A+ +
Sbjct: 432 ITESNGSSSMASVCGGCLSLLSAGVPLKAHVAGIAMGLILEGNKFAVLTD---------I 482
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T G + +Q + +++ L AK+ ++ K
Sbjct: 483 LGDEDHLGDMDFKVAGTTEG-VTALQMDIKIQGITKEIMQIALAQAKEARLHILDQMKAA 541
Query: 238 IS 239
++
Sbjct: 542 VA 543
Score = 86.8 bits (213), Expect = 2e-15, Method: Composition-based stats.
Identities = 36/228 (15%), Positives = 73/228 (32%), Gaps = 27/228 (11%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT----KHGWITAEYGMLPR 68
++L +++ A + V GDT + T ++V + T G +P
Sbjct: 16 VTLETGEIARQAAAAVKVSMGDTVVFVAVTTNKEVKEGQDFFPLAVDYLERTYAAGKIPG 75
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
R G+Q + R+I R +R + QI+ + + +
Sbjct: 76 GFFKR------EGKQSEKEILTSRLIDRPIRPLFPEGFYHDIQIVAMVVSVDPEIDSDIP 129
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+ GA A G + A G + G +++ E + +D
Sbjct: 130 AMLGASAA-------------LVLSGVPFAGPIGAARVGYINGVYVLNPTKAELAKSQLD 176
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
T ++ V+ A+ +D + D++ I +
Sbjct: 177 LVVAGTSK-AVLMVESEAKI--LPEDVMLGAVVYGHDQMQVAINAINE 221
>gi|311695954|gb|ADP98827.1| polynucleotide phosphorylase/polyadenylase [marine bacterium HP15]
Length = 727
Score = 159 bits (401), Expect = 4e-37, Method: Composition-based stats.
Identities = 44/243 (18%), Positives = 84/243 (34%), Gaps = 18/243 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +R I + V GS L G+T + T TL + ++ + +
Sbjct: 339 RIDGRDNKTVRPIEIEVGVLPSVHGSALFTRGETQAIVTTTLGTSRDVQIIDALEGERKD 398
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + R+ G + R + +V+ I +
Sbjct: 399 PFLFHYNFPPYSVGEAGRVGTPGRREVGHGRL----AKRGVLAVMPTLEEFPYAIRAVSE 454
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ G+ +AL D ++ + V +G A+ +
Sbjct: 455 ITESNGSSSMASVCGSSLALMDAGVPIKAPVAGIAMGLVKEGDKFAVLTD---------I 505
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T G + +Q + + + L A ++ V
Sbjct: 506 LGDEDHLGDMDFKVAGTQEG-VTALQMDIKINGITDEIMEIALEQAHAARLHILGEMNKV 564
Query: 238 ISN 240
IS
Sbjct: 565 ISE 567
Score = 94.1 bits (232), Expect = 1e-17, Method: Composition-based stats.
Identities = 33/229 (14%), Positives = 69/229 (30%), Gaps = 28/229 (12%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKV----PMWIRNTKHGWITAEYGMLPR 68
++L +++ A GS LV D +L T ++ P + + T G +P
Sbjct: 38 VTLETGRIARQATGSVLVTVDDISVLGTVVGAKEAKPGQPFFPLTVNYFEKTYAVGKIPG 97
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
R GR + R+I R +R + + Q+I +
Sbjct: 98 GFFKR------EGRPSEKETLTSRLIDRPIRPLFPNGFMNEVQVITTVMSSSKNQDPDI- 150
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY-PIVDLDYGEDSTIDV 187
+ + G + A G ++ + E T +
Sbjct: 151 ------------AAMLAASAALSISGIPFDGPIGASRVGYTNERGYFLNPTFEELQTSLL 198
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
D T+ ++ V+ A+ ++D + + + K+
Sbjct: 199 DMVVAGTED-AVLMVESEAKG--LTEDQMLGGVLYGHQEMQTAVTAIKE 244
>gi|120556251|ref|YP_960602.1| polynucleotide phosphorylase/polyadenylase [Marinobacter aquaeolei
VT8]
gi|187610283|sp|A1U5Z6|PNP_MARAV RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|120326100|gb|ABM20415.1| Polyribonucleotide nucleotidyltransferase [Marinobacter aquaeolei
VT8]
Length = 722
Score = 159 bits (401), Expect = 4e-37, Method: Composition-based stats.
Identities = 44/243 (18%), Positives = 86/243 (35%), Gaps = 18/243 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +R I + V GS L G+T + TATL + ++ + +
Sbjct: 334 RIDGRDNKTVRPIKVEVGVLPSVHGSALFTRGETQAIVTATLGTTRDVQIIDALEGERKD 393
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + + R+ G + R + +V+ I +
Sbjct: 394 PFLFHYNFPPYSVGEAGRMGSPGRREIGHGRL----AKRGVAAVMPTIEEFPYAIRAVSE 449
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ G+ +AL D ++ + V +G A+ +
Sbjct: 450 ITESNGSSSMASVCGSSLALMDAGVPLKAPVAGIAMGLVKEGDKFAVLTD---------I 500
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T G + +Q + + + L A ++ V
Sbjct: 501 LGDEDHLGDMDFKVAGTKEG-VTALQMDIKIQGITDEIMEIALEQANAARLHILDEMNKV 559
Query: 238 ISN 240
I+
Sbjct: 560 IAE 562
Score = 97.6 bits (241), Expect = 1e-18, Method: Composition-based stats.
Identities = 35/228 (15%), Positives = 71/228 (31%), Gaps = 28/228 (12%)
Query: 15 SLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPM----WIRNTKHGWITAEYGMLPRS 69
+L +++ A G+ LV GDT +L T ++ + + T G +P
Sbjct: 34 TLETGRIARQATGAVLVSTGDTAVLGTVVGAKEPKPGQGFFPLTVNYQEKTYAAGKIPGG 93
Query: 70 TGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAA 129
R GR + R+I R +R + + Q+++ +
Sbjct: 94 FFKR------EGRPSEKETLTSRLIDRPIRPLFPNGYMNEVQVVLTVMSASKNHDPDI-- 145
Query: 130 ITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY-PIVDLDYGEDSTIDVD 188
+ + G + A G ++ + E ST +D
Sbjct: 146 -----------AAMIAASAALAISGIPFDGPIGAARVGYTNEKGYFLNPTFEELSTSLLD 194
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
TD ++ V+ A+ ++D + + I K+
Sbjct: 195 MVVAGTDE-AVLMVESEAKG--LTEDQMLGAVLFGHQEMQTAITAIKE 239
>gi|75908883|ref|YP_323179.1| ribonuclease PH [Anabaena variabilis ATCC 29413]
gi|123609297|sp|Q3M9Q2|RNPH_ANAVT RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|75702608|gb|ABA22284.1| RNAse PH [Anabaena variabilis ATCC 29413]
Length = 247
Score = 159 bits (401), Expect = 4e-37, Method: Composition-based stats.
Identities = 94/239 (39%), Positives = 142/239 (59%), Gaps = 4/239 (1%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R GR+ ++R I+ + +++A GS L G+T +L T ++ E VP ++ + GW+TA
Sbjct: 5 RPDGRKPYELRPINFHTKFTRFAPGSVLTICGETKVLCTVSVAESVPKFLAGSGKGWLTA 64
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
EY MLP +T R E + GR+QEIQR+IGR+LR+ +D ALG R + +D DV+QA
Sbjct: 65 EYRMLPSATQQR--HERELLKLSGRTQEIQRLIGRSLRAAIDFEALGERTLTVDADVLQA 122
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
D GTRTAAITG +VAL + + + + + VAA+S G+L +DL+Y E
Sbjct: 123 DAGTRTAAITGGFVALAEAISQLLQRGVLERSPLCGQ--VAAVSVGLLEQEAYLDLNYIE 180
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
D VD N VM + I+EVQG+AE +FS+ +L+ A+ I L+ Q+ I++
Sbjct: 181 DVAATVDFNVVMNKNLGIIEVQGTAEEGSFSRTQLNQLLDCAETGIQQLLIAQQKAITD 239
>gi|300025003|ref|YP_003757614.1| polyribonucleotide nucleotidyltransferase [Hyphomicrobium
denitrificans ATCC 51888]
gi|299526824|gb|ADJ25293.1| polyribonucleotide nucleotidyltransferase [Hyphomicrobium
denitrificans ATCC 51888]
Length = 733
Score = 159 bits (401), Expect = 4e-37, Method: Composition-based stats.
Identities = 44/242 (18%), Positives = 87/242 (35%), Gaps = 18/242 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
MR+ GR +R I V GS L G+T L ATL +E+ + TK
Sbjct: 314 MRIDGRDLKTVRPILSEVHVLPRTHGSALFTRGETQALVVATLGTGEDEQFIDSLEGTKK 373
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P S G + + R+ G + RA+ ++ + +
Sbjct: 374 ERFLLHYNFPPYSVGEVGRMGSPGRREIGHGKL----AWRAIHPMLPSQEDFPYTLRVVS 429
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
++ +++G + A + G+ +AL D ++ + + +G +
Sbjct: 430 EITESNGSSSMATVCGSSLALMDAGVPLKSPVAGIAMGLIKEGDEFVVLSD--------- 480
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T +G + +Q + +++ L+ A D ++
Sbjct: 481 ILGDEDHLGDMDFKVAGTANG-VTSLQMDIKITGITEEIMRIALDQAHDGRIHILGEMAK 539
Query: 237 VI 238
+
Sbjct: 540 SL 541
Score = 106 bits (265), Expect = 2e-21, Method: Composition-based stats.
Identities = 32/235 (13%), Positives = 72/235 (30%), Gaps = 28/235 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----HGWITAEYGML 66
R++ L ++ A+ + + ++GDT +L T V I + T G +
Sbjct: 14 RKLKLETGHYARQADAAVMAQYGDTTVLATVVGARSVKPGIDFFPLTVNYQERTYAAGKI 73
Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
P R GR + R+I R +R + Q+++ +
Sbjct: 74 PGGYFKR------EGRPSEKETLTSRLIDRPIRPLFVEGFKNETQVVVTVLSHDLENDPD 127
Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
+ A A G + G++ G +++ E
Sbjct: 128 ILGMVAASAA-------------LTLSGLPFLGPIGGARVGLVNGELVLNPMIDEMKDSA 174
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
+D T ++ V+ A+ + + + +I+ ++ +
Sbjct: 175 LDLVVAGTAD-AVMMVESEAKE--LPEAQMLEAVVFGHKHMQPVIQAI-ITLAEK 225
>gi|291514384|emb|CBK63594.1| polyribonucleotide nucleotidyltransferase [Alistipes shahii WAL
8301]
Length = 747
Score = 159 bits (401), Expect = 4e-37, Method: Composition-based stats.
Identities = 51/244 (20%), Positives = 89/244 (36%), Gaps = 16/244 (6%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56
+RL GR+ +++R I A GS + G+T LTT T L+EKV +
Sbjct: 323 VRLDGRKTDEIRPIWCEVGYLPAAHGSAIFTRGETQSLTTVTLGTKLDEKVKDEVLVQGT 382
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P STG +S R+ G RAL+ ++ L + +
Sbjct: 383 EQFVLHYNFPPFSTGEAKAARGLSRREIGHGHL----AWRALKPMIPLGEDNPYAVRVVS 438
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
D+++++G + A + +AL D + + + + + D
Sbjct: 439 DILESNGSSSMATVCAGTLALMDAGVKLRKPVSGIAMGLISDSETG-------KWAVLSD 491
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T G I Q + S + A L A+ ++ +
Sbjct: 492 ILGDEDHLGDMDFKVTGTKDG-ITATQMDIKVDGLSYEVLAAALEQARKGRMHILGKLTE 550
Query: 237 VISN 240
I+
Sbjct: 551 CIAE 554
Score = 106 bits (263), Expect = 3e-21, Method: Composition-based stats.
Identities = 44/241 (18%), Positives = 76/241 (31%), Gaps = 28/241 (11%)
Query: 7 QENQMREISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----HGWITA 61
R+I + ++K A+GS +VK GDT LL T + + A
Sbjct: 15 TLADGRQIEIETGKLAKQADGSVVVKMGDTMLLGTVVAAKDAKPDTDFMPLQVEYKEKYA 74
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
G P R R + R+I RALR + +
Sbjct: 75 AVGRFPGGFMKR------EARANDSEVLVARLIDRALRPLFPADYHAEVYVT-------- 120
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
I+ D L + + G ++ + G ++ Y E
Sbjct: 121 -----VNLISADKDIQPDALAGLAASAALAVSDIPFGGPISEVRVVRRNGEYAINPTYSE 175
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
D+D T +I+ V+ E S++ + A + I +Q + +S E
Sbjct: 176 MPECDLDIMVGGTID-NILMVE--GEMKEVSEEVMLGAIKFAHEEIKKHCAVQIE-LSKE 231
Query: 242 V 242
+
Sbjct: 232 L 232
>gi|332976716|gb|EGK13552.1| polyribonucleotide nucleotidyltransferase [Psychrobacter sp.
1501(2011)]
Length = 702
Score = 159 bits (401), Expect = 4e-37, Method: Composition-based stats.
Identities = 47/237 (19%), Positives = 88/237 (37%), Gaps = 10/237 (4%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R+ GR + +R + + V Y GS L G+T L T TL + + ++ G I
Sbjct: 320 RIDGRDLDTVRALDIQVGVLPYTHGSALFTRGETQALVTTTLGNSRDVNLIDSLAGTIQD 379
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
+ + V G R R+ R +++++ S I + ++ ++
Sbjct: 380 HFMLHYNFPHFSVGETGREGVPKRREIGHGRLARRGVQAMLPDSDRFPYVIRVVSEITES 439
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
+G + A++ GA +AL D M+ + V +G A+ + E
Sbjct: 440 NGSSSMASVCGASLALMDAGVPMKAPVAGIAMGLVKEGDRFAVLSD---------ILGDE 490
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
D D+D T G I +Q + + D L A ++ +V+
Sbjct: 491 DHLGDMDFKVAGTKDG-ITALQMDIKIEGITADIMEKALEKAHAGRIHILNAMNEVL 546
Score = 69.1 bits (167), Expect = 5e-10, Method: Composition-based stats.
Identities = 41/241 (17%), Positives = 73/241 (30%), Gaps = 48/241 (19%)
Query: 14 ISLTRR-VSKYAEGSCLVKFG------------DTHLLTTATLEEKVPMWIRNTKHGWIT 60
+ + +++ A S LV G + E + +
Sbjct: 18 VIIETGRIARQAN-SVLVHMGGVSVLVAVVVKSEAK--------EGQNFFPLTVNYQEKM 68
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
G +P + G R GR R+I R +R + + QI
Sbjct: 69 YAAGKIPGAYGKR------EGRPTEFETLTSRLIDRPIRPLFPEGYVNEIQITATVVSSD 122
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
AA+ GA A G V G + G +++
Sbjct: 123 KKHYADIAAMIGASAA-------------LAISDAPFNGPVGGARVGFINGEYVLNPSIE 169
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR----IADLIKLQKD 236
E D+D T S ++ V+ +E A S+D + ++ I ++++L K
Sbjct: 170 ELKNSDLDLVVAGTKS-AVLMVE--SEAAELSEDQMLGAVLYGHEQQQIVIDNIVELAKA 226
Query: 237 V 237
V
Sbjct: 227 V 227
>gi|169831661|ref|YP_001717643.1| ribonuclease PH [Candidatus Desulforudis audaxviator MP104C]
gi|226736902|sp|B1I4W9|RNPH_DESAP RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|169638505|gb|ACA60011.1| ribonuclease PH [Candidatus Desulforudis audaxviator MP104C]
Length = 261
Score = 159 bits (401), Expect = 4e-37, Method: Composition-based stats.
Identities = 117/240 (48%), Positives = 162/240 (67%), Gaps = 2/240 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+R+ GR QMR + +TR +KYAEGS L++ GDT ++ TA+++ +VP +++ GW+T
Sbjct: 2 IRVDGRAPAQMRPVYITRHYNKYAEGSALIEVGDTRVICTASIDNRVPTFLKGAGKGWVT 61
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AE+GMLPR+TG R RE+V G GGRS EIQR+IGR+LR+VVDL ALG R +I+DCDVIQ
Sbjct: 62 AEFGMLPRATGVRGIRESVKGHPGGRSLEIQRLIGRSLRAVVDLPALGERTVILDCDVIQ 121
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTAAITG +VAL D +Q + + +VAA S G+ G ++DL +
Sbjct: 122 ADGGTRTAAITGGFVALVDAMQTLVTE--GVTPRLPVLDYVAATSVGLFEGEAVLDLCFA 179
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
EDS +VD N VMT +G VEVQG+ E TF + +L+LA I L++ Q+ V+ +
Sbjct: 180 EDSAAEVDFNVVMTGTGRFVEVQGTGEGTTFERADVDRLLDLAVVGIRSLVEQQRAVLGS 239
>gi|163739819|ref|ZP_02147226.1| Polyribonucleotide nucleotidyltransferase [Phaeobacter
gallaeciensis BS107]
gi|161386853|gb|EDQ11215.1| Polyribonucleotide nucleotidyltransferase [Phaeobacter
gallaeciensis BS107]
Length = 712
Score = 159 bits (401), Expect = 4e-37, Method: Composition-based stats.
Identities = 46/243 (18%), Positives = 89/243 (36%), Gaps = 17/243 (6%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +R I + GS L G+T L TL +E+ +
Sbjct: 318 RIDGRSTTDVRAIESETGMLPRTHGSALFTRGETQALAVTTLGTGDDEQFIDALHGNFKS 377
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + + R+ G + RAL++V+ I + +
Sbjct: 378 NFLLHYNFPPYSVGEVGRVGSPGRREIGHGKL----AWRALQAVLPAPTDFPYTIRVVSE 433
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ G +++ D ++ + +L+ + + D+
Sbjct: 434 ITESNGSSSMASVCGGSLSMMDAGVPLKAPVAGVAMGLILEDDGS--------YAILSDI 485
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D TD G I +Q + A + + L+ AKD ++
Sbjct: 486 LGDEDHLGDMDFKVAGTDKG-ITSLQMDIKVAGITPEIMEKALDQAKDGRLHILGEMAKA 544
Query: 238 ISN 240
+S
Sbjct: 545 LSE 547
Score = 101 bits (250), Expect = 1e-19, Method: Composition-based stats.
Identities = 29/228 (12%), Positives = 62/228 (27%), Gaps = 25/228 (10%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGN 72
++L V++ A+G+ + G+T ++ T + E
Sbjct: 16 LTLETGKVARQADGTVIATLGETSVMANVTFARQQKPGQDFFPLTVHYQEKYYAAGKVP- 74
Query: 73 RVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITG 132
R + R+I R +R + ++ A+
Sbjct: 75 -GGFFKREARPTEKETLTARLIDRPIRPLFVPGFKNEVLVMCTVLSHDLVNDPDMVAMIA 133
Query: 133 AWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGED------STID 186
A A G +AA G G +++ +
Sbjct: 134 ASAA-------------LTLSGAPFMGPIAAARVGFEGGEYVLNPTVDDMQDLRLNPDQR 180
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
+D T ++ V+ A ++ + A ++I +I L
Sbjct: 181 LDLVVAGTKD-AVMMVESEAYE--LTEAEMLGAVKFAHEQIQPVIDLI 225
>gi|194098066|ref|YP_002001114.1| polynucleotide phosphorylase/polyadenylase [Neisseria gonorrhoeae
NCCP11945]
gi|239998524|ref|ZP_04718448.1| polynucleotide phosphorylase/polyadenylase [Neisseria gonorrhoeae
35/02]
gi|240013649|ref|ZP_04720562.1| polynucleotide phosphorylase/polyadenylase [Neisseria gonorrhoeae
DGI18]
gi|240080230|ref|ZP_04724773.1| polynucleotide phosphorylase/polyadenylase [Neisseria gonorrhoeae
FA19]
gi|240115183|ref|ZP_04729245.1| polynucleotide phosphorylase/polyadenylase [Neisseria gonorrhoeae
PID18]
gi|240127729|ref|ZP_04740390.1| polynucleotide phosphorylase/polyadenylase [Neisseria gonorrhoeae
SK-93-1035]
gi|260440999|ref|ZP_05794815.1| polynucleotide phosphorylase/polyadenylase [Neisseria gonorrhoeae
DGI2]
gi|226702668|sp|B4RK29|PNP_NEIG2 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|193933356|gb|ACF29180.1| polyribonucleotide nucleotidyltransferase [Neisseria gonorrhoeae
NCCP11945]
gi|317163799|gb|ADV07340.1| polynucleotide phosphorylase/polyadenylase [Neisseria gonorrhoeae
TCDC-NG08107]
Length = 706
Score = 158 bits (400), Expect = 4e-37, Method: Composition-based stats.
Identities = 46/242 (19%), Positives = 93/242 (38%), Gaps = 18/242 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +R +++ V GS L G+T L ATL +E++ +
Sbjct: 316 RIDGRDTRTVRPLNIQTGVLPRTHGSALFTRGETQALAVATLGTSRDEQIIDALSGEYTD 375
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P STG + A R+ G + RAL +V+ S + + +
Sbjct: 376 RFMLHYNFPPYSTGEVGRMGAPKRREIGHGRL----AKRALLAVLPKPEDFSYTMRVVSE 431
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ G ++L ++ + +L+G+ A+ +
Sbjct: 432 ITESNGSSSMASVCGGCLSLLSAGVPLKAHVAGIAMGLILEGNKFAVLTD---------I 482
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T G + +Q + +++ L AK+ ++ K
Sbjct: 483 LGDEDHLGDMDFKVAGTTEG-VTALQMDIKIQGITKEIMQIALAQAKEARLHILDQMKAA 541
Query: 238 IS 239
++
Sbjct: 542 VA 543
Score = 86.8 bits (213), Expect = 2e-15, Method: Composition-based stats.
Identities = 36/228 (15%), Positives = 73/228 (32%), Gaps = 27/228 (11%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT----KHGWITAEYGMLPR 68
++L +++ A + V GDT + T ++V + T G +P
Sbjct: 16 VTLETGEIARQAAAAVKVSMGDTVVFVAVTTNKEVKEGQDFFPLAVDYLERTYAAGKIPG 75
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
R G+Q + R+I R +R + QI+ + + +
Sbjct: 76 GFFKR------EGKQSEKEILTSRLIDRPIRPLFPEGFYHDIQIVAMVVSVDPEIDSDIP 129
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+ GA A G + A G + G +++ E + +D
Sbjct: 130 AMLGASAA-------------LVLSGVPFAGPIGAARVGYINGVYVLNPTKAELAKSQLD 176
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
T ++ V+ A+ +D + D++ I +
Sbjct: 177 LVVAGTSK-AVLMVESEAKI--LPEDVMLGAVVYGHDQMQVAINAINE 221
>gi|209551633|ref|YP_002283550.1| polynucleotide phosphorylase/polyadenylase [Rhizobium leguminosarum
bv. trifolii WSM2304]
gi|226702681|sp|B5ZW24|PNP_RHILW RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|209537389|gb|ACI57324.1| Polyribonucleotide nucleotidyltransferase [Rhizobium leguminosarum
bv. trifolii WSM2304]
Length = 712
Score = 158 bits (400), Expect = 4e-37, Method: Composition-based stats.
Identities = 45/243 (18%), Positives = 88/243 (36%), Gaps = 18/243 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR + +R I + GS L G+T + ATL +E+ +
Sbjct: 316 RIDGRDLSTVRPIVSEVGLLPRTHGSALFTRGETQAIVVATLGTGEDEQYVDSLTGMYKE 375
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + + R+ G + RA+R ++ + + + +
Sbjct: 376 RFLLHYNFPPYSVGETGRMGSPGRREIGHGKL----AWRAIRPMLPTAEQFPYTLRVVSE 431
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A + G +AL D + + +L+G A+ +
Sbjct: 432 ITESNGSSSMATVCGTSLALMDAGVPLAKPVAGIAMGLILEGDRFAVLSD---------I 482
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T G I +Q + A +++ L A+ A ++
Sbjct: 483 LGDEDHLGDMDFKVAGTADG-ITSLQMDIKIAGITEEIMKVALGQAQGGRAHILGEMAKA 541
Query: 238 ISN 240
I+
Sbjct: 542 ITE 544
Score = 107 bits (266), Expect = 2e-21, Method: Composition-based stats.
Identities = 31/228 (13%), Positives = 69/228 (30%), Gaps = 27/228 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----HGWITAEYGML 66
R + L +++ A+G+ L +G+T +L T + + T G +
Sbjct: 14 RPLKLETGKIARQADGAVLATYGETVVLATVVSAKAPKPGQDFFPLTVNYQEKTYAAGKI 73
Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
P R GR + + R+I R +R + Q+++ +
Sbjct: 74 PGGYFKR------EGRPSEKETLVSRLIDRPIRPLFPEGYKNDTQVVVTVVQHDLENDPD 127
Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
++ A A G V G + G +++ E
Sbjct: 128 VLSMVAASAA-------------LTLSGVPFMGPVGGARVGYINGEYVLNPHLDEMDESS 174
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
+D T ++ V+ A+ +++ + ++
Sbjct: 175 LDLVVAGTYD-AVLMVESEAKE--LNEEVMLGAVMFGHKGFQPVLDAI 219
>gi|163744086|ref|ZP_02151452.1| polynucleotide phosphorylase/polyadenylase [Phaeobacter
gallaeciensis 2.10]
gi|161382633|gb|EDQ07036.1| polynucleotide phosphorylase/polyadenylase [Phaeobacter
gallaeciensis 2.10]
Length = 704
Score = 158 bits (400), Expect = 4e-37, Method: Composition-based stats.
Identities = 46/243 (18%), Positives = 89/243 (36%), Gaps = 17/243 (6%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +R I + GS L G+T L TL +E+ +
Sbjct: 310 RIDGRSTTDVRAIESETGMLPRTHGSALFTRGETQALAVTTLGTGDDEQFIDALHGNFKS 369
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + + R+ G + RAL++V+ I + +
Sbjct: 370 NFLLHYNFPPYSVGEVGRVGSPGRREIGHGKL----AWRALQAVLPAPTDFPYTIRVVSE 425
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ G +++ D ++ + +L+ + + D+
Sbjct: 426 ITESNGSSSMASVCGGSLSMMDAGVPLKAPVAGVAMGLILEDDGS--------YAILSDI 477
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D TD G I +Q + A + + L+ AKD ++
Sbjct: 478 LGDEDHLGDMDFKVAGTDKG-ITSLQMDIKVAGITPEIMEKALDQAKDGRLHILGEMAKA 536
Query: 238 ISN 240
+S
Sbjct: 537 LSE 539
Score = 101 bits (250), Expect = 1e-19, Method: Composition-based stats.
Identities = 29/228 (12%), Positives = 62/228 (27%), Gaps = 25/228 (10%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGN 72
++L V++ A+G+ + G+T ++ T + E
Sbjct: 8 LTLETGKVARQADGTVIATLGETSVMANVTFARQQKPGQDFFPLTVHYQEKYYAAGKVP- 66
Query: 73 RVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITG 132
R + R+I R +R + ++ A+
Sbjct: 67 -GGFFKREARPTEKETLTARLIDRPIRPLFVPGFKNEVLVMCTVLSHDLVNDPDMVAMIA 125
Query: 133 AWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGED------STID 186
A A G +AA G G +++ +
Sbjct: 126 ASAA-------------LTLSGAPFMGPIAAARVGFEGGEYVLNPTVDDMQDLRLNPDQR 172
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
+D T ++ V+ A ++ + A ++I +I L
Sbjct: 173 LDLVVAGTKD-AVMMVESEAYE--LTEAEMLGAVKFAHEQIQPVIDLI 217
>gi|292572117|gb|ADE30032.1| Polyribonucleotide nucleotidyltransferase [Rickettsia prowazekii
Rp22]
Length = 745
Score = 158 bits (400), Expect = 4e-37, Method: Composition-based stats.
Identities = 45/244 (18%), Positives = 88/244 (36%), Gaps = 18/244 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56
+R+ GR +R+I+ + A GS L G+T L + T L+E++ +
Sbjct: 315 IRIDGRSTTDIRQIACEVGLLPSAHGSALFTRGETQSLVSTTFGTSLDEQIVDSLEGEYK 374
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P S + +A S R+ G + RA+ ++ I +
Sbjct: 375 ERFMLNYIFPPYSVNEAMPMKAPSRREVGHGKL----AWRAINPILPNKVQFPYSIRVVA 430
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+ +++G + A + G+ +AL ++ + V + + A+
Sbjct: 431 ETTESNGSSSMATVCGSSLALMHAGVPIKAPVAGIAMGLVKESNKFAVLSD--------- 481
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T G I +Q + + L A+ +++
Sbjct: 482 IIGDEDYFGDMDFKVAGTSQG-ITALQMDIKISGIDFKIIQIALEQARLGRLHILEQMNK 540
Query: 237 VISN 240
VIS
Sbjct: 541 VISK 544
Score = 89.9 bits (221), Expect = 3e-16, Method: Composition-based stats.
Identities = 39/232 (16%), Positives = 78/232 (33%), Gaps = 27/232 (11%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPM----WIRNTKHGWITAEYGMLPR 68
+ ++ +++ A + VK G++ LL T + KV + + + G +P
Sbjct: 16 LEISTGKIARQANAAVTVKMGNSILLCTCVVANKVKDGIGFFPLTINYREMAYSAGKIPG 75
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
R G+ R + R+I R +R + + + +
Sbjct: 76 GFFKR------EGKASDREILVSRLIDRPIRPLFHQAFMHETHVTCSVLSYDPATPVDIL 129
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
AI GA A VAA G++ G +++ T +D
Sbjct: 130 AIIGASAA-------------LSISPAPYLEIVAASKVGLINGEFVLNPTLELLKTSQLD 176
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
T+ ++ V+ +E S+D + + +IKL K++
Sbjct: 177 LVVAGTED-SVMMVE--SEAHLLSEDKMLEAVKFGFESFQTVIKLIKELAKE 225
>gi|238926818|ref|ZP_04658578.1| polynucleotide phosphorylase/polyadenylase [Selenomonas flueggei
ATCC 43531]
gi|238885350|gb|EEQ48988.1| polynucleotide phosphorylase/polyadenylase [Selenomonas flueggei
ATCC 43531]
Length = 689
Score = 158 bits (400), Expect = 4e-37, Method: Composition-based stats.
Identities = 44/242 (18%), Positives = 88/242 (36%), Gaps = 18/242 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56
+R GR +++R +S + GS L G T +LT T +E++ +
Sbjct: 310 IRPDGRALDEVRPVSCEVGILPRVHGSGLFTRGQTQVLTVTTLGSIGDEQIIDGLGPETT 369
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y S G + R+ G RAL ++ I +
Sbjct: 370 KHYLHHYNFPGYSVGEARPMRSPGRREIGHGAL----AERALFPMIPSIEDFPYTIRLVS 425
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
++++++G + ++ G+ ++L ++ + + V G +I
Sbjct: 426 EILESNGSSSMGSVCGSTLSLMCAGVPIKRPVSGVAMGLVRDGDDYSILTD--------- 476
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED+ D+D T G I +Q + A ++D + L AK A ++ +
Sbjct: 477 IQGMEDALGDMDFKVAGTSKG-ITAIQMDIKIAGITRDILASALEQAKQGRAFILSRMLE 535
Query: 237 VI 238
I
Sbjct: 536 CI 537
Score = 104 bits (260), Expect = 8e-21, Method: Composition-based stats.
Identities = 42/231 (18%), Positives = 85/231 (36%), Gaps = 27/231 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKHGWITAEYGML 66
R++++ ++K A G+ LV++GDT +L TAT E V + + G +
Sbjct: 11 RKLTVEYGKMAKQANGAVLVRYGDTVVLVTATASKAPREGVDFFPLTVDYEEKMYAAGKI 70
Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
P R GR + R+I R +R + QI+ ++ D
Sbjct: 71 PGGFIKR------EGRPSSDAVLCARLIDRPIRPLFPDGFRNDVQIVATVLSVEQDNPAE 124
Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
AA+ GA A G +A + G + G +++ + + D
Sbjct: 125 IAAMLGASCA-------------LTISDIPFMGPIAGVRVGYINGSFVINPTEEQRADSD 171
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
++ + ++ V+ A ++ + I L++ Q+++
Sbjct: 172 LNLTVAGSYD-AVMMVEAGANE--LPEEIVLDAILFGHAEIRRLVEFQQNI 219
>gi|238918030|ref|YP_002931544.1| ribonuclease PH, [Edwardsiella ictaluri 93-146]
gi|259494120|sp|C5B9C9|RNPH_EDWI9 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|238867598|gb|ACR67309.1| ribonuclease PH, putative [Edwardsiella ictaluri 93-146]
Length = 238
Score = 158 bits (400), Expect = 4e-37, Method: Composition-based stats.
Identities = 121/240 (50%), Positives = 161/240 (67%), Gaps = 2/240 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR GR Q+R + LTR +K+AEGS LV+FGDT +L TA+++E VP +++ GW+T
Sbjct: 1 MRPEGRAAGQIRPLRLTRHYTKHAEGSVLVEFGDTKVLCTASVDEGVPRFLKGQGQGWVT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPRST +R+ REA G+QGGR+ EIQR+I R+LR+ VDL LG I +DCDVIQ
Sbjct: 61 AEYGMLPRSTHSRMAREAAKGKQGGRTMEIQRLIARSLRAAVDLKKLGEFTITLDCDVIQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+ITGA VAL D L + + LKG VAA+S G++ G + DL+Y
Sbjct: 121 ADGGTRTASITGACVALADALGALVAAGKLKES--PLKGMVAAVSVGIVAGGAVCDLEYV 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
EDS + D N VM + G ++EVQG+AE FS + +L LA+D I +I+ QK +
Sbjct: 179 EDSAAETDMNVVMMEDGRMIEVQGTAEGEPFSHEELLTLLALARDGIGQIIQAQKTALEQ 238
>gi|42523058|ref|NP_968438.1| polynucleotide phosphorylase/polyadenylase [Bdellovibrio
bacteriovorus HD100]
gi|81617621|sp|Q6MMS2|PNP_BDEBA RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|39575263|emb|CAE79431.1| polyribonucleotide nucleotidyltransferase [Bdellovibrio
bacteriovorus HD100]
Length = 697
Score = 158 bits (400), Expect = 4e-37, Method: Composition-based stats.
Identities = 48/243 (19%), Positives = 93/243 (38%), Gaps = 18/243 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
+R+ GR +R I+ + A GS L G+T +L T TL +E++ + +
Sbjct: 317 VRIDGRDVKTVRPIANEVGILPRAHGSGLFTRGETQVLGTVTLGTADDEQMVDSLLGLQK 376
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P S G + S R+ G RA+++V+ I I
Sbjct: 377 RKFMLHYNFPPYSVGEVGRMSGTSRREIGHGNL----AERAIKAVLPDFEKFPYTIRIVS 432
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V++++G + + +AL D ++ + + +G A+
Sbjct: 433 EVLESNGSSSMGTVCSGIMALLDAGVPLKGNVAGVAMGLIKEGDRVAVLTD--------- 483
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D + +G I +Q + + S + L AK+ A ++ +
Sbjct: 484 ILGDEDHLGDMDFKVAGSPAG-ITALQMDIKIDSVSFEVMEQALAQAKEGRAHILNEMEK 542
Query: 237 VIS 239
V+
Sbjct: 543 VMK 545
Score = 99.5 bits (246), Expect = 3e-19, Method: Composition-based stats.
Identities = 43/232 (18%), Positives = 79/232 (34%), Gaps = 27/232 (11%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEE---KVPMWIRNTKHGWITAEYGMLPRS 69
I++ ++K A+G+ LV G+ +L TAT + ++ + ++ G +P
Sbjct: 14 ITIETGRLAKQADGAALVSSGNNMVLVTATSSKKASELDFFPLTVEYIEKFYATGKIPGG 73
Query: 70 TGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAA 129
R + + I R+I R +R V QI+ A
Sbjct: 74 YFKR------EAKPTNDAVLIARLIDRPIRPVFPEGYRHETQIVATVLSADGAFPLEILA 127
Query: 130 ITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDA 189
GA ALH G AA+ + G + + + D+D
Sbjct: 128 SLGASAALHC-------------SDIPFNGPTAAVQIARVDGQFVANPTPQQMEKSDMDM 174
Query: 190 NFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
T +G ++ V+ E S+ A L + L+ Q + + +
Sbjct: 175 IVAGTRNG-LLMVE--GETKFISEADALAALKFGHQSLIPLLNAQDE-LREK 222
>gi|240123023|ref|ZP_04735979.1| polynucleotide phosphorylase/polyadenylase [Neisseria gonorrhoeae
PID332]
Length = 706
Score = 158 bits (400), Expect = 4e-37, Method: Composition-based stats.
Identities = 46/242 (19%), Positives = 93/242 (38%), Gaps = 18/242 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +R +++ V GS L G+T L ATL +E++ +
Sbjct: 316 RIDGRDTRTVRPLNIQTGVLPRTHGSALFTRGETQALAVATLGTSRDEQIIDALSGEYTD 375
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P STG + A R+ G + RAL +V+ S + + +
Sbjct: 376 RFMLHYNFPPYSTGEVGRMGAPKRREIGHGRL----AKRALLAVLPKPEDFSYTMRVVSE 431
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ G ++L ++ + +L+G+ A+ +
Sbjct: 432 ITESNGSSSMASVCGGCLSLLSAGVPLKAHVAGIAMGLILEGNKFAVLTD---------I 482
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T G + +Q + +++ L AK+ ++ K
Sbjct: 483 LGDEDHLGDMDFKVAGTTEG-VTALQMDIKIQGITKEIMQIALAQAKEARLHILDQMKAA 541
Query: 238 IS 239
++
Sbjct: 542 VA 543
Score = 86.8 bits (213), Expect = 2e-15, Method: Composition-based stats.
Identities = 36/228 (15%), Positives = 73/228 (32%), Gaps = 27/228 (11%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT----KHGWITAEYGMLPR 68
++L +++ A + V GDT + T ++V + T G +P
Sbjct: 16 VTLETGEIARQAAAAVKVSMGDTVVFVAVTTNKEVKEGQDFFPLAVDYLERTYAAGKIPG 75
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
R G+Q + R+I R +R + QI+ + + +
Sbjct: 76 GFFKR------EGKQSEKEILTSRLIDRPIRPLFPEGFYHDIQIVAMVVSVDPEIDSDIP 129
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+ GA A G + A G + G +++ E + +D
Sbjct: 130 AMLGASAA-------------LVLSGVPFAGPIGAARVGYINGVYVLNPTKAELAKSQLD 176
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
T ++ V+ A+ +D + D++ I +
Sbjct: 177 LVVAGTSK-AVLMVESEAKI--LPEDVMLGAVVYGHDQMQVAINAINE 221
>gi|193214790|ref|YP_001995989.1| polynucleotide phosphorylase/polyadenylase [Chloroherpeton
thalassium ATCC 35110]
gi|226702635|sp|B3QY14|PNP_CHLT3 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|193088267|gb|ACF13542.1| Polyribonucleotide nucleotidyltransferase [Chloroherpeton
thalassium ATCC 35110]
Length = 729
Score = 158 bits (400), Expect = 4e-37, Method: Composition-based stats.
Identities = 49/243 (20%), Positives = 93/243 (38%), Gaps = 18/243 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
RL GR+ +++R IS+ + A GS L G+T L T TL + ++ + +
Sbjct: 332 RLDGRRLDEIRPISIELGLIPRAHGSALFTRGETQALVTLTLGTKKDAQLTDTLFDDADK 391
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + +VS R+ G RA++ VV + + D
Sbjct: 392 RFMLHYNFPPFSVGEVGRMGSVSRREIGHGNL----AERAIKKVVPAENAFPYTMRVVSD 447
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+++++G + A++ G +A D ++ + + +G A+ +
Sbjct: 448 ILESNGSSSMASVCGGTLAAMDGGVPIKSPVAGIAMGLIKEGERYAVLSD---------I 498
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T G I Q + L A+ ++K+ +
Sbjct: 499 LGNEDHLGDMDFKVAGTIDG-ITACQMDIKIDGLDYAIVEKALEQARQGRMHILKIMDEA 557
Query: 238 ISN 240
I++
Sbjct: 558 ITS 560
Score = 109 bits (271), Expect = 5e-22, Method: Composition-based stats.
Identities = 39/235 (16%), Positives = 75/235 (31%), Gaps = 29/235 (12%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPM-----WIRNTKHGWITAEYGMLP 67
+ + ++K A+GS +V +T +L T ++ P + ++ + G P
Sbjct: 15 LKIETGKMAKQADGSAVVSLEETMVLATVVSKKDAPPANQNFFPLQVEYREKYSAAGKFP 74
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R GR + R+I RALR + QII+
Sbjct: 75 GGFIKR------EGRPSDKEILSARLIDRALRPLFPDGYYQETQIIVTVISSDQLNDADV 128
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
A AL + ++ + G + G ++ E D+
Sbjct: 129 LGGIAASCALM-------------ASDIPFENPMSEVRVGRINGDFLIFPHVQELEESDM 175
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNEV 242
D T I ++ E + S+ + D I + + Q++ + V
Sbjct: 176 DICIGGTAD-TICMLE--GEMSEISEAEMIGAIKFGHDVIRKICEAQRE-LREVV 226
>gi|85373534|ref|YP_457596.1| polynucleotide phosphorylase/polyadenylase [Erythrobacter litoralis
HTCC2594]
gi|123409685|sp|Q2NBZ2|PNP_ERYLH RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|84786617|gb|ABC62799.1| polyribonucleotide nucleotidyltransferase [Erythrobacter litoralis
HTCC2594]
Length = 769
Score = 158 bits (400), Expect = 4e-37, Method: Composition-based stats.
Identities = 47/243 (19%), Positives = 94/243 (38%), Gaps = 18/243 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKHG 57
R+ GR+ +++R I + GS L G+T + T TL E++ + +
Sbjct: 320 RIDGRKTDEVRPIEAMVGLLPRTHGSALFTRGETQAICTTTLGTKDSEQMIDGLEGLSYS 379
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + S R+ G + RALR V+ + I + D
Sbjct: 380 NFMLHYNFPPYSVGEVGRFGFTSRRETGHGKL----AFRALRPVLPDNEEFPYTIRVLSD 435
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A + G +++ D ++ + + +L+G + +
Sbjct: 436 ITESNGSSSMATVCGGSLSMMDAGVPLKRPVSGIAMGLILEGDDFTVLSD---------I 486
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D ++ G I +Q + A +Q+ L AK A ++ +
Sbjct: 487 LGDEDHLGDMDFKVAGSEEG-ITSLQMDIKVAGITQEIMTKALEQAKAGRAHILGKMTEA 545
Query: 238 ISN 240
+ +
Sbjct: 546 LGS 548
Score = 96.5 bits (238), Expect = 3e-18, Method: Composition-based stats.
Identities = 33/229 (14%), Positives = 66/229 (28%), Gaps = 30/229 (13%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT----KHGWITAEYGMLPR 68
++L +++ A+G+ L +G+T +L T V + + G +P
Sbjct: 16 LTLETGQIARQADGAVLATYGETVVLCAVTAARSVKEGQDFFPLTVHYQEKFSAAGRIPG 75
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
R GR + R+I R +R + +I +
Sbjct: 76 GFFKR------EGRATEKETLTSRLIDRPVRPLFPEGFYNEINVIAQVLSYDGETEPDIV 129
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGED---STI 185
A+ A A G + A G V D
Sbjct: 130 AMIAASAA-------------LTISGLPFMGPIGAARVGFTNDGEYVLNPSVVDALGEDG 176
Query: 186 DVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
++D T ++ V+ A+ +++ + A + +I
Sbjct: 177 NLDLVVAATQD-AVMMVESEAKE--LTEEQMLGAVMFAHEESRKVIGAI 222
>gi|304320664|ref|YP_003854307.1| Pnp, polyribonucleotide nucleotidyltransferase [Parvularcula
bermudensis HTCC2503]
gi|303299566|gb|ADM09165.1| Pnp, polyribonucleotide nucleotidyltransferase [Parvularcula
bermudensis HTCC2503]
Length = 708
Score = 158 bits (400), Expect = 4e-37, Method: Composition-based stats.
Identities = 47/242 (19%), Positives = 90/242 (37%), Gaps = 18/242 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +R I + GS L G+T + ATL +E+ + T
Sbjct: 316 RIDGRDTKTVRPIESEVGILPRTHGSALFTRGETQAIVVATLGTADDEQFIDALEGTYKE 375
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + + R+ G + RA+R+V+ I + +
Sbjct: 376 NFLLHYNFPPYSVGETGRMGSPGRREIGHGKL----AWRAVRAVLPSQEEFPYVIRLVSE 431
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A + G+ +A+ D ++ + +L+G A+ +
Sbjct: 432 ITESNGSSSMATVCGSSLAMMDAGVPLKRAVAGIAMGLILEGEQFAVLSD---------I 482
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T G + +Q + A +++ L AKD ++
Sbjct: 483 LGDEDHLGDMDFKVAGTSEG-VTSLQMDIKVAGITEEIMQTALGQAKDGRMHILGEMNKA 541
Query: 238 IS 239
+S
Sbjct: 542 LS 543
Score = 113 bits (281), Expect = 3e-23, Method: Composition-based stats.
Identities = 34/228 (14%), Positives = 70/228 (30%), Gaps = 27/228 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----HGWITAEYGML 66
R ++L +++ A+G+ L +G+T +L T +++ + T G +
Sbjct: 14 RPLTLETGRIARQADGAVLATYGETTVLATVVGQKEAKPGQDFFPLTVNYQEKTYAAGRI 73
Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
P R GR + R+I R +R + Q++ +
Sbjct: 74 PGGFFKR------EGRPSEKETLTSRLIDRPIRPLFAPGFKNEVQVVCTVMSHDLENDPD 127
Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
A+ A A G + A G +V+ +
Sbjct: 128 VVAMIAASAA-------------LTISGIPFMGPIGAARVAYKDGEYLVNPTGADLEGSR 174
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
+D T ++ V+ +E S+D + ++I
Sbjct: 175 LDLVMAGTAD-AVMMVE--SEADELSEDIMLGAVIKGHAAAKEMIDHI 219
>gi|147677610|ref|YP_001211825.1| polynucleotide phosphorylase/polyadenylase [Pelotomaculum
thermopropionicum SI]
gi|187610305|sp|A5D2S6|PNP_PELTS RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|146273707|dbj|BAF59456.1| polyribonucleotide nucleotidyltransferase [Pelotomaculum
thermopropionicum SI]
Length = 734
Score = 158 bits (400), Expect = 4e-37, Method: Composition-based stats.
Identities = 50/242 (20%), Positives = 91/242 (37%), Gaps = 18/242 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
+R+ GR N++R IS+ V GS L G T +L+ TL EE++ + +
Sbjct: 325 LRIDGRALNEVRPISVEVGVLPRPHGSGLFTRGQTQILSVVTLGTVSEEQILDGLGVEES 384
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P STG + R+ G RAL +V+ I I
Sbjct: 385 KRFMHHYNFPPYSTGETRPLRSPGRREIGHGAL----AERALAAVIPGEEEFPYTIRIVS 440
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+ ++++G T ++ G+ +AL D + + + +G +
Sbjct: 441 EALESNGSTSMGSVCGSTLALMDAGVPISAPVAGVAMGLIKEGDNFTVLTD--------- 491
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T G I +Q + +++ F L A + ++ +
Sbjct: 492 IQGFEDHLGDMDFKVAGTAKG-ITALQMDIKIPGITREVFEKALAQAYEGRMHILNKMLE 550
Query: 237 VI 238
V+
Sbjct: 551 VL 552
Score = 104 bits (259), Expect = 1e-20, Method: Composition-based stats.
Identities = 39/229 (17%), Positives = 80/229 (34%), Gaps = 27/229 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKV----PMWIRNTKHGWITAEYGML 66
R + L ++ A G+ V++GDT +L TAT+ V + + G +
Sbjct: 16 RPMILETGRLANQASGAVFVRYGDTAVLVTATVAPTVRAGIDFFPLTVDYEERFYAVGKI 75
Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
P R R ++ R+I R +R + Q+I + D
Sbjct: 76 PGGFIKR------ESRPSEKAILSGRLIDRPIRPLFPKEMRNEVQVIATILSVDQDNAPE 129
Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
AA+ GA ALH LK + + G + G +++ + D
Sbjct: 130 IAAMVGASAALH-------------ISEIPLKFPIGGVIVGRVDGRFVINPVLAQAEKSD 176
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
+ T ++ V+ A+ ++ ++ + + +++ +
Sbjct: 177 MHLVVAGTKD-AVMMVEAGAKEVP--EEVILEAISFGHETVKEIVAFIE 222
>gi|118590504|ref|ZP_01547906.1| polynucleotide phosphorylase/polyadenylase [Stappia aggregata IAM
12614]
gi|118436967|gb|EAV43606.1| polynucleotide phosphorylase/polyadenylase [Stappia aggregata IAM
12614]
Length = 709
Score = 158 bits (400), Expect = 4e-37, Method: Composition-based stats.
Identities = 46/243 (18%), Positives = 87/243 (35%), Gaps = 18/243 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR + +R IS + A GS L G+T L ATL +E+ + T
Sbjct: 317 RIDGRDLSTVRAISSEVGILPRAHGSALFTRGETQGLVVATLGTGEDEQYIDLLEGTVKS 376
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + + R+ G + RA+ ++ + + +
Sbjct: 377 HFMLHYNFPPYSVGETGRMGSPGRREIGHGKL----AWRAINPMMPPHHEFPYTVRVVSE 432
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A + G ++L D ++ + + G A+ +
Sbjct: 433 ITESNGSSSMATVCGTSLSLMDAGVPLKAPVAGIAMGLIKDGDRFAVLSD---------I 483
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T G I +Q + +++ L AKD ++
Sbjct: 484 LGDEDHLGDMDFKVAGTQDG-ITSLQMDIKIDGITEEIMKVALGQAKDGRIHILGEMSKA 542
Query: 238 ISN 240
I+
Sbjct: 543 ITE 545
Score = 108 bits (269), Expect = 7e-22, Method: Composition-based stats.
Identities = 31/228 (13%), Positives = 66/228 (28%), Gaps = 27/228 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----HGWITAEYGML 66
R + L V++ A+G+ + +G+T +L T + + G +
Sbjct: 14 RPLVLETGKVARQADGAVMASYGETKVLATVVSAKSPKPGQDFFPLTVNYQEKAFAAGKI 73
Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
P R GR R+I R +R + Q++I +
Sbjct: 74 PGGYFKR------EGRPSEHETLTSRLIDRPIRPLFADGYKNDTQVVITVLSHDLENAPD 127
Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
A+ + A G + G + G +++ +
Sbjct: 128 ILAMVASSAA-------------LTLSGVPFMGPIGGARVGYINGEYVLNPLVDDMPEST 174
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
+D T+ ++ V+ A+ +D + +I
Sbjct: 175 LDLVVAGTND-AVLMVESEAKE--LDEDIMLGAVMFGHKGFQPVIDAI 219
>gi|225351161|ref|ZP_03742184.1| hypothetical protein BIFPSEUDO_02751 [Bifidobacterium
pseudocatenulatum DSM 20438]
gi|225158617|gb|EEG71859.1| hypothetical protein BIFPSEUDO_02751 [Bifidobacterium
pseudocatenulatum DSM 20438]
Length = 253
Score = 158 bits (400), Expect = 4e-37, Method: Composition-based stats.
Identities = 106/229 (46%), Positives = 153/229 (66%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+R GR+ +++R + +TR + EGS LV+ G+T ++ TAT VP W +++ GW+T
Sbjct: 13 IRTDGRKVDELRPVRITRHFTDVPEGSVLVECGNTRVMCTATFTAGVPRWRKDSGLGWVT 72
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEY MLPR+T +R RE+V G+ GGR+ EI R+IGR LR VVD+ ALG Q+ IDCDV+Q
Sbjct: 73 AEYAMLPRATADRTDRESVRGKIGGRTHEISRLIGRCLRGVVDMKALGENQVQIDCDVLQ 132
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+ITGA+VAL D ++ E + +V+K V+A+S G++ G P++DL Y
Sbjct: 133 ADGGTRTASITGAYVALVDAMRWAEKHKHIRSAERVIKDSVSAVSVGVIDGTPMLDLPYI 192
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIAD 229
EDS D N MT SG +E+QG+AE F++ A+L+LA+ +
Sbjct: 193 EDSKAMTDMNVAMTGSGEFIEIQGTAEHRPFNRAELNALLDLAEKGNKE 241
>gi|254671820|emb|CBA03945.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
alpha275]
Length = 579
Score = 158 bits (400), Expect = 5e-37, Method: Composition-based stats.
Identities = 46/242 (19%), Positives = 93/242 (38%), Gaps = 18/242 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +R +++ V GS L G+T L ATL +E++ +
Sbjct: 316 RIDGRDTRTVRPLNIQTGVLPRTHGSALFTRGETQALAVATLGTSRDEQIIDALSGEYTD 375
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P STG + A R+ G + RAL +V+ S + + +
Sbjct: 376 RFMLHYNFPPYSTGEVGRVGAPKRREIGHGRL----AKRALLAVLPKPEDFSYTMRVVSE 431
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ G ++L ++ + +L+G+ A+ +
Sbjct: 432 ITESNGSSSMASVCGGCLSLLSAGVPLKAHVAGIAMGLILEGNKFAVLTD---------I 482
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T G + +Q + +++ L AK+ ++ K
Sbjct: 483 LGDEDHLGDMDFKVAGTTEG-VTALQMDIKIQGITKEIMQIALAQAKEARLHILDQMKAA 541
Query: 238 IS 239
++
Sbjct: 542 VA 543
Score = 89.5 bits (220), Expect = 3e-16, Method: Composition-based stats.
Identities = 37/228 (16%), Positives = 75/228 (32%), Gaps = 27/228 (11%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGMLPR 68
++L +++ A + V GDT +L T ++E + + T G +P
Sbjct: 16 VTLETGEIARQAAAAVKVSMGDTVVLVAVTTNKEVKEGQDFFPLTVDYLERTYAAGKIPG 75
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
R G+Q + R+I R +R + QI+ + + +
Sbjct: 76 GFFKR------EGKQSEKEILTSRLIDRPIRPLFPEGFYHDIQIVAMVVSVDPEIDSDIP 129
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+ GA A G + A G + G +++ E + +D
Sbjct: 130 AMLGASAA-------------LVLSGVPFAGPIGAARVGYVNGVYVLNPTKAELAKSQLD 176
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
T ++ V+ A+ +D + D++ I +
Sbjct: 177 LVVAGTSK-AVLMVESEAKI--LPEDVMLGAVVYGHDQMQVAINAINE 221
>gi|192359049|ref|YP_001980963.1| polynucleotide phosphorylase/polyadenylase [Cellvibrio japonicus
Ueda107]
gi|226702631|sp|B3PIA0|PNP_CELJU RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|190685214|gb|ACE82892.1| polyribonucleotide nucleotidyltransferase [Cellvibrio japonicus
Ueda107]
Length = 710
Score = 158 bits (400), Expect = 5e-37, Method: Composition-based stats.
Identities = 45/243 (18%), Positives = 92/243 (37%), Gaps = 18/243 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +R I++ V A GS L G+T L ATL + ++ + K
Sbjct: 315 RIDGRDNKTVRPITVDVGVLPKAHGSALFTRGETQALVVATLGNARDVQIIDQLEGEKKE 374
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + + R+ G + R +++V+ + + + +
Sbjct: 375 AFLLHYNFPPYSVGECGRMGSTGRREIGHGRL----AKRGVQAVLPKAESFPYTLRVVSE 430
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ G+ +AL D ++ + V + + A+ +
Sbjct: 431 ITESNGSSSMASVCGSSLALMDAGVPLKAPVAGIAMGLVKEDNGFAVLTD---------I 481
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T SG + +Q + +++ L A ++ V
Sbjct: 482 LGDEDHLGDMDFKVAGTTSG-VTALQMDIKIEGITEEIMEIALEQALAARLHILGEMNKV 540
Query: 238 ISN 240
+S
Sbjct: 541 LSQ 543
Score = 101 bits (252), Expect = 7e-20, Method: Composition-based stats.
Identities = 36/226 (15%), Positives = 69/226 (30%), Gaps = 28/226 (12%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT----KHGWITAEYGMLPR 68
++L +++ A G+ LV G+ +L T ++ + G +P
Sbjct: 15 VTLETGRIARQATGAVLVSIGEVAVLCTVVGAKEASPGQDFFPLSVHYQEKAYAAGRIPG 74
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
R GR + R+I R +R + L Q+I A
Sbjct: 75 GYFKR------EGRPSEKETLTSRLIDRPIRPLFPEGFLNEVQVICTVVSTDKKQDPDIA 128
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC-GYPIVDLDYGEDSTIDV 187
A+ G A G + A G I++ Y + T ++
Sbjct: 129 AMIGTSAA-------------LAVSGIPFNGPIGAARVGYTQGEGYILNPSYKQLETSEL 175
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
D T ++ V+ A+ +D + + +I+
Sbjct: 176 DMVVAGTKD-AVLMVESEAKE--LPEDIMLGAVLYGHQEMQAVIQA 218
>gi|168702929|ref|ZP_02735206.1| RNase PH [Gemmata obscuriglobus UQM 2246]
Length = 243
Score = 158 bits (400), Expect = 5e-37, Method: Composition-based stats.
Identities = 109/239 (45%), Positives = 151/239 (63%), Gaps = 2/239 (0%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R + R +RE+S TR ++ A GS LVK G T +L T +E KVP ++ GW+TA
Sbjct: 3 RPNDRSPTALRELSFTRGYTRPAPGSVLVKMGRTTVLCTCCVEPKVPDFLVGKGKGWLTA 62
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
EYGMLP ST R R+ + GRS EIQR+IGR+LR+VV+L LG R + IDCDV++A
Sbjct: 63 EYGMLPGSTHTRKPRDKAG-KVDGRSVEIQRLIGRSLRAVVNLDKLGERTLWIDCDVLEA 121
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
DGGTRTA+ITGA+VA D + ++ +++VL VAA+S G++ G +DL+Y E
Sbjct: 122 DGGTRTASITGAFVAAVDAINSIKSLLT-VPVTEVLTDSVAAVSVGLIEGEERLDLEYVE 180
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
D DVD N VMT SG I+EVQGS E ATF++ +++L + I + QK + +
Sbjct: 181 DRDADVDMNLVMTGSGKIIEVQGSGEEATFTRKQLDRLVDLGEAGIQAITLAQKAALGS 239
>gi|302039398|ref|YP_003799720.1| polyribonucleotide nucleotidyltransferase [Candidatus Nitrospira
defluvii]
gi|300607462|emb|CBK43795.1| Polyribonucleotide nucleotidyltransferase [Candidatus Nitrospira
defluvii]
Length = 705
Score = 158 bits (400), Expect = 5e-37, Method: Composition-based stats.
Identities = 43/244 (17%), Positives = 84/244 (34%), Gaps = 18/244 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
+R GR +R I+ V A GS + G+T L TL +E+ +
Sbjct: 311 VRADGRGPADIRPITCEVGVLPRAHGSAVFTRGETQSLAVVTLGTTDDEQRIDALEGEYM 370
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P S G + R+ G RAL+S++ + I
Sbjct: 371 RTFMLHYNFPPFSVGEARPLRSPGRREVGHGAL----AERALKSIIPGKDKFPYTVRIVS 426
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
++++++G + A + G +AL D +++ + + +G +
Sbjct: 427 EILESNGSSSMATVCGGTLALLDAGVPIKEPVAGIAMGLIKEGDQVLVLSD--------- 477
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T +G + +Q + + L AK ++
Sbjct: 478 ILGLEDHLGDMDFKVTGTKNG-VTALQMDIKIGGITAGLMREALAQAKAGRLHILGCMAQ 536
Query: 237 VISN 240
++
Sbjct: 537 ALTE 540
Score = 104 bits (260), Expect = 8e-21, Method: Composition-based stats.
Identities = 41/230 (17%), Positives = 77/230 (33%), Gaps = 27/230 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRN----TKHGWITAEYGML 66
R ++L ++K A+G+ +GDT +L TA + + + T G +
Sbjct: 12 RRLTLETGRIAKQADGAIWATYGDTVVLATAVASQNAKPGVDFLPLTVDYQEKTYAAGKI 71
Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
P R GR R R+I R LR + Q+I
Sbjct: 72 PGGYFKR------EGRPSEREVLTSRLIDRPLRPLFPEGYYFETQVIASV---------- 115
Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
++ + D + + + S G +A + G + G +V+ D T D
Sbjct: 116 ---LSADKTGVSDVIGIIAASAALAVSSIPFNGPIAGVKIGRVNGQFVVNPDLETLETSD 172
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ T ++ V+ A + + LA I ++ ++
Sbjct: 173 LHLVVAGTAD-AVMMVEAGANE--LPEATMLEAIELAHSEIKKIVAKIEE 219
>gi|222084321|ref|YP_002542850.1| polyribonucleotide nucleotidyltransferase protein [Agrobacterium
radiobacter K84]
gi|254782699|sp|B9JGS9|PNP_AGRRK RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|221721769|gb|ACM24925.1| polyribonucleotide nucleotidyltransferase protein [Agrobacterium
radiobacter K84]
Length = 710
Score = 158 bits (400), Expect = 5e-37, Method: Composition-based stats.
Identities = 45/243 (18%), Positives = 85/243 (34%), Gaps = 18/243 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR + +R I V GS L G+T + ATL +E+ +
Sbjct: 316 RIDGRDLSTVRAIVSEVGVLPRTHGSSLFTRGETQAIVVATLGTGEDEQYVDSLTGMYKE 375
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + + R+ G + RA+R ++ + + + +
Sbjct: 376 RFLLHYNFPPYSVGETGRMGSPGRREIGHGKL----AWRAVRPMLPTAEQFPYTLRVVSE 431
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A + G +AL D + + + + A+ +
Sbjct: 432 ITESNGSSSMATVCGTSLALMDAGVPLAKPVAGIAMGLIKEDERFAVLSD---------I 482
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T G I +Q + +++ LN AK ++
Sbjct: 483 LGDEDHLGDMDFKVAGT-DGGITALQMDIKIEGITEEIMNVALNQAKGGRLHILGEMAKA 541
Query: 238 ISN 240
IS
Sbjct: 542 ISE 544
Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats.
Identities = 31/228 (13%), Positives = 68/228 (29%), Gaps = 27/228 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----HGWITAEYGML 66
R + L +++ A+G+ + +G+T +L T + + T G +
Sbjct: 14 RPLKLETGKIARQADGAVMATYGETVVLATVVSAKSPKPGQDFFPLTVNYQEKTYAAGKI 73
Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
P R GR + + R+I R +R + Q+++ +
Sbjct: 74 PGGYFKR------EGRPSEKETLVSRLIDRPIRPLFPEGYKNDTQVVVTVIQHDLENDPD 127
Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
++ A G + G + G +++ E
Sbjct: 128 ILSMVATSAA-------------LTLSGVPFMGPIGGARVGYINGEYVLNPHLDEMDESS 174
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
+D T ++ V+ A+ S+D + +I
Sbjct: 175 LDLVVAGTQE-AVLMVESEAKE--LSEDVMLGAVMFGHRGFQPVIDAI 219
>gi|254804638|ref|YP_003082859.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
alpha14]
gi|254668180|emb|CBA04880.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
alpha14]
Length = 706
Score = 158 bits (400), Expect = 5e-37, Method: Composition-based stats.
Identities = 46/242 (19%), Positives = 93/242 (38%), Gaps = 18/242 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +R +++ V GS L G+T L ATL +E++ +
Sbjct: 316 RIDGRDTRTVRPLNIQTGVLPRTHGSALFTRGETQALAVATLGTSRDEQIIDALSGEYTD 375
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P STG + A R+ G + RAL +V+ S + + +
Sbjct: 376 RFMLHYNFPPYSTGEVGRMGAPKRREIGHGRL----AKRALLAVLPKPEDFSYTMRVVSE 431
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ G ++L ++ + +L+G+ A+ +
Sbjct: 432 ITESNGSSSMASVCGGCLSLLSAGVPLKAHVAGIAMGLILEGNKFAVLTD---------I 482
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T G + +Q + +++ L AK+ ++ K
Sbjct: 483 LGDEDHLGDMDFKVAGTTEG-VTALQMDIKIQGITKEIMQIALAQAKEARLHILDQMKAA 541
Query: 238 IS 239
++
Sbjct: 542 VA 543
Score = 89.1 bits (219), Expect = 5e-16, Method: Composition-based stats.
Identities = 37/228 (16%), Positives = 75/228 (32%), Gaps = 27/228 (11%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGMLPR 68
++L +++ A + V GDT +L T ++E + + T G +P
Sbjct: 16 VTLETGEIARQAAAAVKVSMGDTVVLVAVTTNKEVKEGQDFFPLTVDYLERTYAAGKIPG 75
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
R G+Q + R+I R +R + QI+ + + +
Sbjct: 76 GFFKR------EGKQSEKEILTSRLIDRPIRPLFPEGFFHDIQIVAMVVSVDPEIDSDIP 129
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+ GA A G + A G + G +++ E + +D
Sbjct: 130 AMLGASAA-------------LVLSGVPFAGPIGAARVGYVNGVYVLNPTKAELAKSQLD 176
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
T ++ V+ A+ +D + D++ I +
Sbjct: 177 LVVAGTSK-AVLMVESEAKI--LPEDVMLGAVVYGHDQMQVAINAINE 221
>gi|254437652|ref|ZP_05051146.1| 3' exoribonuclease family, domain 2 [Octadecabacter antarcticus
307]
gi|198253098|gb|EDY77412.1| 3' exoribonuclease family, domain 2 [Octadecabacter antarcticus
307]
Length = 710
Score = 158 bits (400), Expect = 5e-37, Method: Composition-based stats.
Identities = 43/243 (17%), Positives = 93/243 (38%), Gaps = 17/243 (6%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR+ +++R+I + GS L G+T L TL +E++ +
Sbjct: 318 RIDGRKTDEIRDIVSETGILPRTHGSALFTRGETQGLVVTTLGTGDDEQMIDSLSGMYKS 377
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + R+ G + RAL++V+ + I + +
Sbjct: 378 NFMLHYNFPPYSVGEVGRFGFTGRREIGHGKL----AWRALQAVLPAATDFPYTIRVVSE 433
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ G +++ D ++ + +++ + + D+
Sbjct: 434 ITESNGSSSMASVCGGSLSMMDAGVPLKAPVAGVAMGLIMQDDGS--------YAILSDI 485
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T++G I +Q + A + L AK ++
Sbjct: 486 LGDEDHLGDMDFKVAGTEAG-ITSLQMDIKIAGITPAIMKEALAQAKVGRVHILGEMNKA 544
Query: 238 ISN 240
+S+
Sbjct: 545 LSS 547
Score = 104 bits (259), Expect = 1e-20, Method: Composition-based stats.
Identities = 35/232 (15%), Positives = 70/232 (30%), Gaps = 33/232 (14%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT----KHGWITAEYGMLPR 68
++L V++ A+G+ + +G+T ++ T +K +G G +P
Sbjct: 16 LTLETGKVARQADGTVIATYGETTVMANVTFAKKQKPGQDFFPLTVHYGEKYYAAGKVPG 75
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
R R + R+I R +R + +I
Sbjct: 76 GFFKR------EARPTEKETLTSRLIDRPIRPLFVEGFKNEVLVICTVLSHDLVNDPDMV 129
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDS----- 183
A+ A A G +AA G G I++ + +
Sbjct: 130 AMIAASAA-------------LTISGAPFMGPIAACRVGFEGGDYILNPEMDDMHKLREN 176
Query: 184 -TIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
+D T ++ V+ A S++ + A +I +I +
Sbjct: 177 PDQRLDLVVAGTKD-AVMMVESEAYE--LSEEEMLGAVEFAHAQIQPVIDMI 225
>gi|83945015|ref|ZP_00957381.1| polyribonucleotide nucleotidyltransferase [Oceanicaulis alexandrii
HTCC2633]
gi|83851797|gb|EAP89652.1| polyribonucleotide nucleotidyltransferase [Oceanicaulis alexandrii
HTCC2633]
Length = 709
Score = 158 bits (400), Expect = 5e-37, Method: Composition-based stats.
Identities = 50/242 (20%), Positives = 89/242 (36%), Gaps = 18/242 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +Q+R I V GS L G+T L TL +E+ + T
Sbjct: 317 RIDGRSLDQVRPIVSEATVLPRTHGSALFTRGETQALAVVTLGTGEDEQFIDALTGTYKE 376
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G R A R+ G + RAL +V+ + + + +
Sbjct: 377 RFLLHYNFPPYSVGETSFRLAPGRREIGHGKL----AWRALNAVMPNAETFPYTVRLVSE 432
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A + G +AL D + + + + A+ +
Sbjct: 433 ITESNGSSSMATVCGGSLALMDAGVPITRPVSGIAMGLIKDPEGVAVLSD---------I 483
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T+ G + +Q + A ++D LN AK +++
Sbjct: 484 LGDEDHLGDMDFKVAGTEEG-VTSLQMDIKIAGITKDIMQTALNQAKGGRMHILEEMNKA 542
Query: 238 IS 239
+S
Sbjct: 543 LS 544
Score = 111 bits (277), Expect = 1e-22, Method: Composition-based stats.
Identities = 38/228 (16%), Positives = 75/228 (32%), Gaps = 27/228 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----HGWITAEYGML 66
R ++L +++ A G+ L +G+T +L TA ++ V + + G +
Sbjct: 14 RTLTLETGRMARQANGAVLATYGETTVLATAVAQKDVKPGVDFFPLTVNYQEKYFAAGKI 73
Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
P R GR + R+I R +R + Q++I +
Sbjct: 74 PGGYFKR------EGRPTDKETLTSRLIDRPIRPLFPKGFKNDTQVMITVLSHDLENDPD 127
Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
+ GA AL G + A G G I++ E +
Sbjct: 128 VVGMIGASAALC-------------LSGLPFLGPIGAARVGYKDGEYIINPTVAEMDDTE 174
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
+D T ++ V+ A+ S++ + + +I +
Sbjct: 175 LDLVVAGTSD-AVMMVESEAKE--LSEETMLGAVMAGHEAFQPVIDMI 219
>gi|110636259|ref|YP_676467.1| polynucleotide phosphorylase/polyadenylase [Mesorhizobium sp. BNC1]
gi|123161513|sp|Q11BC3|PNP_MESSB RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|110287243|gb|ABG65302.1| 3' exoribonuclease [Chelativorans sp. BNC1]
Length = 715
Score = 158 bits (400), Expect = 5e-37, Method: Composition-based stats.
Identities = 44/243 (18%), Positives = 84/243 (34%), Gaps = 18/243 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +R I V GS + G+T L ATL +E+ + T
Sbjct: 317 RIDGRDLRSVRPIVAEVGVLPRTHGSAVFTRGETQALVVATLGTGEDEQYVDSLTGTVKE 376
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + + R+ G + RA+ ++ I + +
Sbjct: 377 TFMLHYNFPPYSVGETGRMGSPGRREIGHGKL----AWRAVHPLLPAPEQFPYTIRVVSE 432
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A + G +AL D + + + + A+ +
Sbjct: 433 ITESNGSSSMATVCGTSLALMDAGVPLAKPVAGIAMGLIKEDDRFAVLSD---------I 483
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T G + +Q + +++ L AKD ++ +
Sbjct: 484 LGDEDHLGDMDFKVAGTAEG-VTSLQMDIKITGITEEIMKVALEQAKDGRLHILGEMANA 542
Query: 238 ISN 240
+S
Sbjct: 543 LSE 545
Score = 106 bits (263), Expect = 4e-21, Method: Composition-based stats.
Identities = 38/228 (16%), Positives = 71/228 (31%), Gaps = 27/228 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----HGWITAEYGML 66
R + L +++ A+G+ L +G+T +L T ++ I + T G +
Sbjct: 14 RPLILETGKIARQADGAVLATYGETVVLATVVSAKEPKPGIDFFPLTVNYQEKTFAAGKI 73
Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
P R GR + + R+I R +R + Q+II +
Sbjct: 74 PGGYFKR------EGRPSEKETLVSRLIDRPIRPLFVEGYKNDTQVIITVLQHDLENDPD 127
Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
++ A A G V A G + G I++ E +
Sbjct: 128 ILSMVAASAA-------------LTLSGVPFMGPVGAARVGYVGGEYILNPHLDEMAETK 174
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
+D T ++ V+ A +D + +I
Sbjct: 175 LDLVVAGTSD-AVLMVESEAHE--LPEDVMLGAVMFGHRNFQPVIDAI 219
>gi|297623850|ref|YP_003705284.1| polyribonucleotide nucleotidyltransferase [Truepera radiovictrix
DSM 17093]
gi|297165030|gb|ADI14741.1| polyribonucleotide nucleotidyltransferase [Truepera radiovictrix
DSM 17093]
Length = 726
Score = 158 bits (400), Expect = 5e-37, Method: Composition-based stats.
Identities = 44/243 (18%), Positives = 91/243 (37%), Gaps = 18/243 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
+R GR +R I + V GS + G+T +L TL ++++ +
Sbjct: 321 LRADGRAPEDIRPIWIEVGVLPKTHGSAVFTRGETQVLGVTTLGTGKDDRLIDDLGLETS 380
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P STG + VS R+ G RAL ++ + +
Sbjct: 381 ETFMLHYNFPPFSTGEVKRLRGVSRRELGHGNL----ARRALERMMPSQDTFGYVVRVVA 436
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+ ++++G + A++ A +++ D ++ + + +G + D
Sbjct: 437 ETLESNGSSSMASVCAATLSMMDAGVPLKKPVAGIAMGLIKEGDT---------YKILSD 487
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED+ D+D T G + +Q + + + A L A+ ++ L +
Sbjct: 488 ILGSEDALGDMDFKVTGTHDG-VTALQMDIKIKGITPEIMRAALEQARVGRRHILNLMDE 546
Query: 237 VIS 239
V+S
Sbjct: 547 VLS 549
Score = 97.2 bits (240), Expect = 2e-18, Method: Composition-based stats.
Identities = 44/237 (18%), Positives = 82/237 (34%), Gaps = 29/237 (12%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEE---KVPMWIRNTKHGWITAEYGMLP 67
RE+ + +K GS V++GDT +L TA + + ++ G +P
Sbjct: 16 RELIIETGKYAKLVAGSVTVRYGDTVVLVTAHMSDTAADTDFLPLTVEYEERHYAIGKIP 75
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
S R GR G ++ R+ R +R + Q+II +
Sbjct: 76 GSFQRR------EGRPGTQATLNARITDRQIRPLFPKGLRNEVQVIITVLSADRENDPAM 129
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
A GA A + G A +S G + G ++ + +
Sbjct: 130 IAAIGASAA-------------LSISNIPWDGPTACVSVGYVDGQYVLYPSLQTLADSQL 176
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAK---DRIADLIKLQKDVISNE 241
+ ++ ++ V+ SA+ +D + A+ + +LIK + I E
Sbjct: 177 ELTVAASED-AVLMVEASADE--LPEDTMVGAITFAQREMQGVIELIKRMRAEIGQE 230
>gi|254669727|emb|CBA03893.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
alpha153]
Length = 706
Score = 158 bits (400), Expect = 5e-37, Method: Composition-based stats.
Identities = 46/242 (19%), Positives = 93/242 (38%), Gaps = 18/242 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +R +++ V GS L G+T L ATL +E++ +
Sbjct: 316 RIDGRDTRTVRPLNIQTGVLPRTHGSALFTRGETQALAVATLGTSRDEQIIDALSGEYTD 375
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P STG + A R+ G + RAL +V+ S + + +
Sbjct: 376 RFMLHYNFPPYSTGEVGRMGAPKRREIGHGRL----AKRALLAVLPKPEDFSYTMRVVSE 431
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ G ++L ++ + +L+G+ A+ +
Sbjct: 432 ITESNGSSSMASVCGGCLSLLSAGVPLKAHVAGIAMGLILEGNKFAVLTD---------I 482
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T G + +Q + +++ L AK+ ++ K
Sbjct: 483 LGDEDHLGDMDFKVAGTTEG-VTALQMDIKIQGITKEIMQIALAQAKEARLHILDQMKAA 541
Query: 238 IS 239
++
Sbjct: 542 VA 543
Score = 89.5 bits (220), Expect = 4e-16, Method: Composition-based stats.
Identities = 37/228 (16%), Positives = 75/228 (32%), Gaps = 27/228 (11%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGMLPR 68
++L +++ A + V GDT +L T ++E + + T G +P
Sbjct: 16 VTLETGEIARQAAAAVKVSMGDTVVLVAVTTNKEVKEGQDFFPLTVDYLERTYAAGKIPG 75
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
R G+Q + R+I R +R + QI+ + + +
Sbjct: 76 GFFKR------EGKQSEKEILTSRLIDRPIRPLFPEGFYHDIQIVAMVVSVDPEIDSDIP 129
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+ GA A G + A G + G +++ E + +D
Sbjct: 130 AMLGASAA-------------LVLSGVPFAGPIGAARVGYINGVYVLNPTKAELAKSQLD 176
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
T ++ V+ A+ +D + D++ I +
Sbjct: 177 LVVAGTSK-AVLMVESEAKI--LPEDVMLGAVVYGHDQMQVAINAINE 221
>gi|212716722|ref|ZP_03324850.1| hypothetical protein BIFCAT_01659 [Bifidobacterium catenulatum DSM
16992]
gi|212660426|gb|EEB21001.1| hypothetical protein BIFCAT_01659 [Bifidobacterium catenulatum DSM
16992]
Length = 254
Score = 158 bits (400), Expect = 5e-37, Method: Composition-based stats.
Identities = 105/229 (45%), Positives = 152/229 (66%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+R GR+ +++R + +TR + EGS LV+ G+T ++ TAT VP W +++ GW+T
Sbjct: 14 IRADGRKVDELRPVRITRHFTDVPEGSVLVECGNTRVMCTATFTAGVPRWRKDSGLGWVT 73
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEY MLPR+T +R RE+V G+ GGR+ EI R+IGR LR VVD+ ALG Q+ IDCDV+Q
Sbjct: 74 AEYAMLPRATADRTDRESVRGKIGGRTHEISRLIGRCLRGVVDMKALGENQVQIDCDVLQ 133
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+ITGA+VAL D ++ E + +V+K V+A+S G++ G P++DL Y
Sbjct: 134 ADGGTRTASITGAYVALVDAMRWAEKHKHIRSADRVIKDSVSAVSVGVIDGKPMLDLPYI 193
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIAD 229
EDS D N MT SG +E+QG+AE F++ +L+LA+ +
Sbjct: 194 EDSKAMTDMNVAMTGSGEFIEIQGTAEHRPFNRAELNTLLDLAEKGNKE 242
>gi|218767879|ref|YP_002342391.1| polynucleotide phosphorylase/polyadenylase [Neisseria meningitidis
Z2491]
gi|187610303|sp|A1IR09|PNP_NEIMA RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|121051887|emb|CAM08193.1| putative polyribonucleotide nucleotidyltransferase [Neisseria
meningitidis Z2491]
gi|319410126|emb|CBY90462.1| polyribonucleotide nucleotidyltransferase (polynucleotide
phosphorylase; PNPase; CAP87K) [Neisseria meningitidis
WUE 2594]
Length = 706
Score = 158 bits (400), Expect = 5e-37, Method: Composition-based stats.
Identities = 46/242 (19%), Positives = 93/242 (38%), Gaps = 18/242 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +R +++ V GS L G+T L ATL +E++ +
Sbjct: 316 RIDGRDTRTVRPLNIQTGVLPRTHGSALFTRGETQALAVATLGTSRDEQIIDALSGEYTD 375
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P STG + A R+ G + RAL +V+ S + + +
Sbjct: 376 RFMLHYNFPPYSTGEVGRMGAPKRREIGHGRL----AKRALLAVLPKPEDFSYTMRVVSE 431
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ G ++L ++ + +L+G+ A+ +
Sbjct: 432 ITESNGSSSMASVCGGCLSLLSAGVPLKAHVAGIAMGLILEGNKFAVLTD---------I 482
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T G + +Q + +++ L AK+ ++ K
Sbjct: 483 LGDEDHLGDMDFKVAGTTEG-VTALQMDIKIQGITKEIMQIALAQAKEARLHILDQMKAA 541
Query: 238 IS 239
++
Sbjct: 542 VA 543
Score = 89.5 bits (220), Expect = 4e-16, Method: Composition-based stats.
Identities = 37/228 (16%), Positives = 75/228 (32%), Gaps = 27/228 (11%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGMLPR 68
++L +++ A + V GDT +L T ++E + + T G +P
Sbjct: 16 VTLETGEIARQAAAAVKVSMGDTVVLVAVTTNKEVKEGQDFFPLTVDYLERTYAAGKIPG 75
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
R G+Q + R+I R +R + QI+ + + +
Sbjct: 76 GFFKR------EGKQSEKEILTSRLIDRPIRPLFPEGFYHDIQIVAMVVSVDPEIDSDIP 129
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+ GA A G + A G + G +++ E + +D
Sbjct: 130 AMLGASAA-------------LVLSGVPFAGPIGAARVGYINGVYVLNPTKAELAKSQLD 176
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
T ++ V+ A+ +D + D++ I +
Sbjct: 177 LVVAGTSK-AVLMVESEAKI--LPEDVMLGAVVYGHDQMQVAINAINE 221
>gi|325136018|gb|EGC58628.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
M0579]
gi|325202445|gb|ADY97899.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
M01-240149]
gi|325207803|gb|ADZ03255.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
NZ-05/33]
Length = 706
Score = 158 bits (400), Expect = 5e-37, Method: Composition-based stats.
Identities = 46/242 (19%), Positives = 93/242 (38%), Gaps = 18/242 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +R +++ V GS L G+T L ATL +E++ +
Sbjct: 316 RIDGRDTRTVRPLNIQTGVLPRTHGSALFTRGETQALAVATLGTSRDEQIIDALSGEYTD 375
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P STG + A R+ G + RAL +V+ S + + +
Sbjct: 376 RFMLHYNFPPYSTGEVGRMGAPKRREIGHGRL----AKRALLAVLPKPEDFSYTMRVVSE 431
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ G ++L ++ + +L+G+ A+ +
Sbjct: 432 ITESNGSSSMASVCGGCLSLLSAGVPLKAHVAGIAMGLILEGNKFAVLTD---------I 482
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T G + +Q + +++ L AK+ ++ K
Sbjct: 483 LGDEDHLGDMDFKVAGTTEG-VTALQMDIKIQGITKEIMQIALAQAKEARLHILDQMKAA 541
Query: 238 IS 239
++
Sbjct: 542 VA 543
Score = 89.1 bits (219), Expect = 4e-16, Method: Composition-based stats.
Identities = 37/228 (16%), Positives = 75/228 (32%), Gaps = 27/228 (11%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGMLPR 68
++L +++ A + V GDT +L T ++E + + T G +P
Sbjct: 16 VTLETGEIARQAAAAVKVSMGDTVVLVAVTTNKEVKEGQDFFPLTVDYLERTYAAGKIPG 75
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
R G+Q + R+I R +R + QI+ + + +
Sbjct: 76 GFFKR------EGKQSEKEILTSRLIDRPIRPLFPEGFYHDIQIVAMVVSVDPEIDSDIP 129
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+ GA A G + A G + G +++ E + +D
Sbjct: 130 AMLGASAA-------------LVLSGVPFAGPIGAARVGYVNGVYVLNPTKAELAKSQLD 176
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
T ++ V+ A+ +D + D++ I +
Sbjct: 177 LVVAGTSK-AVLMVESEAKI--LPEDVMLGAVVYGHDQMQVAINAINE 221
>gi|77464694|ref|YP_354198.1| polynucleotide phosphorylase/polyadenylase [Rhodobacter sphaeroides
2.4.1]
gi|126463534|ref|YP_001044648.1| polynucleotide phosphorylase/polyadenylase [Rhodobacter sphaeroides
ATCC 17029]
gi|332559587|ref|ZP_08413909.1| polynucleotide phosphorylase/polyadenylase [Rhodobacter sphaeroides
WS8N]
gi|123590859|sp|Q3IYT7|PNP_RHOS4 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|187611277|sp|A3PNG0|PNP_RHOS1 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|77389112|gb|ABA80297.1| polyribonucleotide nucleotidyltransferase [Rhodobacter sphaeroides
2.4.1]
gi|126105198|gb|ABN77876.1| Polyribonucleotide nucleotidyltransferase [Rhodobacter sphaeroides
ATCC 17029]
gi|332277299|gb|EGJ22614.1| polynucleotide phosphorylase/polyadenylase [Rhodobacter sphaeroides
WS8N]
Length = 716
Score = 158 bits (400), Expect = 5e-37, Method: Composition-based stats.
Identities = 46/243 (18%), Positives = 90/243 (37%), Gaps = 17/243 (6%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +R I V GS L G+T L TL +E++ +
Sbjct: 318 RIDGRDTKTVRPIISETSVLPRTHGSALFTRGETQALVVTTLGTGEDEQIIDALHGNSRS 377
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + R+ G + RAL++V+ + I + +
Sbjct: 378 NFLLHYNFPPYSVGEVGRFGPPGRREIGHGKL----AWRALQAVLPAATDFPYTIRVVSE 433
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ G +++ D ++ + +L+ + D+
Sbjct: 434 ITESNGSSSMASVCGGSLSMMDAGVPLKAPVAGVAMGLILEDD--------GKWAVLTDI 485
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T++G I +Q + A + + L AKD ++
Sbjct: 486 LGDEDHLGDMDFKVAGTENG-ITSLQMDIKVAGITPEIMEQALAQAKDGRMHILGEMSKA 544
Query: 238 ISN 240
+S+
Sbjct: 545 LSS 547
Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats.
Identities = 29/228 (12%), Positives = 61/228 (26%), Gaps = 25/228 (10%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGN 72
++L V++ A+GS + G+T ++ T + E
Sbjct: 16 LTLETGKVARQADGSVIATLGETSVMANVTFAKAAKPGQDFFPLTVHYQERYYAAGKVP- 74
Query: 73 RVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITG 132
R + R+I R +R + +I+ A+
Sbjct: 75 -GGFFKREARPSEKETLTSRLIDRPIRPLFVDGFKNEVLLIVTVLSHDLVNEPDIVAMIA 133
Query: 133 AWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDST------ID 186
A A G + A G G +++ D +
Sbjct: 134 ASAA-------------LTISGVPFMGPIGAARVGFAGGEYVLNPDVDDMQKLRENPEQR 180
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
+D T ++ V+ A S+ + + + +I +
Sbjct: 181 LDLVIAGTKD-AVMMVESEAYE--LSEAEMLGAVKFGHEAMQPVIDMI 225
>gi|313895740|ref|ZP_07829296.1| polyribonucleotide nucleotidyltransferase [Selenomonas sp. oral
taxon 137 str. F0430]
gi|312975866|gb|EFR41325.1| polyribonucleotide nucleotidyltransferase [Selenomonas sp. oral
taxon 137 str. F0430]
Length = 635
Score = 158 bits (400), Expect = 5e-37, Method: Composition-based stats.
Identities = 45/242 (18%), Positives = 89/242 (36%), Gaps = 18/242 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56
+R GR N++R +S + GS L G T +LT T +E++ +
Sbjct: 255 IRPDGRALNEVRPVSCEVGILPRTHGSGLFTRGQTQVLTVTTLGSIGDEQIIDGLGPETT 314
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y S G + R+ G RAL ++ I +
Sbjct: 315 KHYLHHYNFPGYSVGEARPMRSPGRREIGHGAL----AERALFPMIPSIEDFPYTIRLVS 370
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
++++++G + ++ G+ ++L ++ + + V G +I
Sbjct: 371 EILESNGSSSMGSVCGSTLSLMCAGVPIKRPVSGVAMGLVRDGDDYSILTD--------- 421
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED+ D+D T G I +Q + A ++D + L AK+ A ++ +
Sbjct: 422 IQGMEDALGDMDFKVAGTAKG-ITAIQMDIKIAGITRDILASALAQAKEGRAFILDKMLE 480
Query: 237 VI 238
I
Sbjct: 481 CI 482
Score = 62.9 bits (151), Expect = 4e-08, Method: Composition-based stats.
Identities = 29/183 (15%), Positives = 59/183 (32%), Gaps = 22/183 (12%)
Query: 55 KHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIII 114
+ G +P R GR + R+I R +R + QI+
Sbjct: 4 DYEEKMYAAGKIPGGFIKR------EGRPSNDAVLCARLIDRPIRPLFPEGFRNDVQIVA 57
Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPI 174
+ D AA+ GA A G +A + G + G +
Sbjct: 58 TVLSVDQDNPPEIAAMLGASCA-------------LTVSDIPFMGPIAGVRVGYVNGAFV 104
Query: 175 VDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
++ E + +++ + ++ V+ A S++ + I L++ Q
Sbjct: 105 INPKEEERAVSELNLTVAGSYD-AVMMVEAGANE--LSEEIVLDAILFGHAEIRRLVEFQ 161
Query: 235 KDV 237
K++
Sbjct: 162 KNI 164
>gi|289523245|ref|ZP_06440099.1| polyribonucleotide nucleotidyltransferase [Anaerobaculum
hydrogeniformans ATCC BAA-1850]
gi|289503788|gb|EFD24952.1| polyribonucleotide nucleotidyltransferase [Anaerobaculum
hydrogeniformans ATCC BAA-1850]
Length = 741
Score = 158 bits (400), Expect = 5e-37, Method: Composition-based stats.
Identities = 45/246 (18%), Positives = 92/246 (37%), Gaps = 20/246 (8%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL-----EEKVPMWIR-NT 54
+R GR +++R IS + A GS + G+T L TL +E++ ++ +
Sbjct: 313 LRADGRAMDELRPISCEVSLLPRAHGSAVFTRGETQALVVTTLGMFGEDEQILDGLKLDE 372
Query: 55 KHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIII 114
Y P S G R+ G RA++ ++ + I +
Sbjct: 373 PPKRFMLHYNFPPFSVGEVRPMRGPGRREIGHGAL----AERAVKPLIPDESQFPYIIRV 428
Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPI 174
D+++++G + A++ GA ++L D + + + +G AI
Sbjct: 429 VSDILESNGSSSMASVCGASMSLMDAGVPIAKSVAGIAMGLIKEGDKYAILTD------- 481
Query: 175 VDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
+ ED D+D T G + +Q + +++ L+ AK ++ +
Sbjct: 482 --IQGLEDHYGDMDFKVAGTRDG-VTALQMDNKAGGITREILVQALDQAKRGRLQILDIM 538
Query: 235 KDVISN 240
+ I
Sbjct: 539 EKAIGR 544
Score = 100 bits (249), Expect = 1e-19, Method: Composition-based stats.
Identities = 40/236 (16%), Positives = 78/236 (33%), Gaps = 28/236 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEK----VPMWIRNTKHGWITAEYGML 66
R + + ++K A G+ ++GDT +L TA +E++ V + + G +
Sbjct: 14 RALVFSTGHLAKQANGAVYARYGDTAVLVTACMEDEPREDVDFFPLIVDYEERFYAAGKI 73
Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
P R G+ + R++ R++RS+ ++ +
Sbjct: 74 PGGFIKR------EGKPSESAILSARLVDRSIRSLFPEHMKNDVHVVATILSVDQTNPPD 127
Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
L + G V A+ G + G +++ +
Sbjct: 128 V-------------LAINAASAALAISDIPWDGPVGAVRVGYIDGSLVINPMEEDMQNST 174
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNEV 242
+D G I V+G A ++ L LA+ I L+ Q + EV
Sbjct: 175 LDLVVAGHKEG-ITMVEGGA--GEVPEEVLVDALELAQQEIRRLVDFQLK-MREEV 226
>gi|309378199|emb|CBX23171.1| unnamed protein product [Neisseria lactamica Y92-1009]
Length = 706
Score = 158 bits (400), Expect = 5e-37, Method: Composition-based stats.
Identities = 46/242 (19%), Positives = 93/242 (38%), Gaps = 18/242 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +R +++ V GS L G+T L ATL +E++ +
Sbjct: 316 RIDGRDTRTVRPLNIQTGVLPRTHGSALFTRGETQALAVATLGTSRDEQIIDALSGEYTD 375
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P STG + A R+ G + RAL +V+ S + + +
Sbjct: 376 RFMLHYNFPPYSTGEVGRVGAPKRREIGHGRL----AKRALLAVLPKPEDFSYTMRVVSE 431
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ G ++L ++ + +L+G+ A+ +
Sbjct: 432 ITESNGSSSMASVCGGCLSLLSAGVPLKAHVAGIAMGLILEGNKFAVLTD---------I 482
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T G + +Q + +++ L AK+ ++ K
Sbjct: 483 LGDEDHLGDMDFKVAGTTEG-VTALQMDIKIQGITKEIMQIALAQAKEARLHILDQMKAA 541
Query: 238 IS 239
++
Sbjct: 542 VA 543
Score = 89.5 bits (220), Expect = 3e-16, Method: Composition-based stats.
Identities = 37/228 (16%), Positives = 75/228 (32%), Gaps = 27/228 (11%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGMLPR 68
++L +++ A + V GDT +L T ++E + + T G +P
Sbjct: 16 VTLETGEIARQAAAAVKVSMGDTVVLVAVTTNKEVKEGQDFFPLTVDYLERTYAAGKIPG 75
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
R G+Q + R+I R +R + QI+ + + +
Sbjct: 76 GFFKR------EGKQSEKEILTSRLIDRPIRPLFPEGFYHDIQIVAMVVSVDPEIDSDIP 129
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+ GA A G + A G + G +++ E + +D
Sbjct: 130 AMLGASAA-------------LVLSGVPFAGPIGAARVGYVNGVYVLNPTKAELAKSQLD 176
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
T ++ V+ A+ +D + D++ I +
Sbjct: 177 LVVAGTSK-AVLMVESEAKI--LPEDVMLGAVVYGHDQMQAAINAINE 221
>gi|325129928|gb|EGC52729.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
OX99.30304]
Length = 706
Score = 158 bits (400), Expect = 5e-37, Method: Composition-based stats.
Identities = 46/242 (19%), Positives = 93/242 (38%), Gaps = 18/242 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +R +++ V GS L G+T L ATL +E++ +
Sbjct: 316 RIDGRDTRTVRPLNIQTGVLPRTHGSALFTRGETQALAVATLGTSRDEQIIDALSGEYTD 375
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P STG + A R+ G + RAL +V+ S + + +
Sbjct: 376 RFMLHYNFPPYSTGEVGRMGAPKRREIGHGRL----AKRALLAVLPKPEDFSYTMRVVSE 431
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ G ++L ++ + +L+G+ A+ +
Sbjct: 432 ITESNGSSSMASVCGGCLSLLSAGVPLKAHVAGIAMGLILEGNKFAVLTD---------I 482
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T G + +Q + +++ L AK+ ++ K
Sbjct: 483 LGDEDHLGDMDFKVAGTTEG-VTALQMDIKIQGITKEIMQIALAQAKEARLHILDQMKAA 541
Query: 238 IS 239
++
Sbjct: 542 VA 543
Score = 89.1 bits (219), Expect = 5e-16, Method: Composition-based stats.
Identities = 37/228 (16%), Positives = 75/228 (32%), Gaps = 27/228 (11%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGMLPR 68
++L +++ A + V GDT +L T ++E + + T G +P
Sbjct: 16 VTLETGEIARQAAAAVKVSMGDTVVLVAVTTNKEVKEGQDFFPLTVDYLERTYAAGKIPG 75
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
R G+Q + R+I R +R + QI+ + + +
Sbjct: 76 GFFKR------EGKQSEKEILTSRLIDRPIRPLFPEGFYHDIQIVAMVVSVDPEIDSDIP 129
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+ GA A G + A G + G +++ E + +D
Sbjct: 130 AMLGASAA-------------LVLSGVPFAGPIGAARVGYVNGVYVLNPTKAELAKSQLD 176
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
T ++ V+ A+ +D + D++ I +
Sbjct: 177 LVVAGTSK-AVLMVESEAKI--LPEDVMLGAVVYGHDQMQVAINAINE 221
>gi|313668762|ref|YP_004049046.1| polyribonucleotide nucleotidyltransferase [Neisseria lactamica
ST-640]
gi|313006224|emb|CBN87686.1| putative polyribonucleotide nucleotidyltransferase [Neisseria
lactamica 020-06]
Length = 706
Score = 158 bits (400), Expect = 5e-37, Method: Composition-based stats.
Identities = 46/242 (19%), Positives = 93/242 (38%), Gaps = 18/242 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +R +++ V GS L G+T L ATL +E++ +
Sbjct: 316 RIDGRDTRTVRPLNIQTGVLPRTHGSALFTRGETQALAVATLGTSRDEQIIDALSGEYTD 375
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P STG + A R+ G + RAL +V+ S + + +
Sbjct: 376 RFMLHYNFPPYSTGEVGRVGAPKRREIGHGRL----AKRALLAVLPKPEDFSYTMRVVSE 431
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ G ++L ++ + +L+G+ A+ +
Sbjct: 432 ITESNGSSSMASVCGGCLSLLSAGVPLKAHVAGIAMGLILEGNKFAVLTD---------I 482
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T G + +Q + +++ L AK+ ++ K
Sbjct: 483 LGDEDHLGDMDFKVAGTTEG-VTALQMDIKIQGITKEIMQIALAQAKEARLHILDQMKAA 541
Query: 238 IS 239
++
Sbjct: 542 VA 543
Score = 89.5 bits (220), Expect = 3e-16, Method: Composition-based stats.
Identities = 37/228 (16%), Positives = 75/228 (32%), Gaps = 27/228 (11%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGMLPR 68
++L +++ A + V GDT +L T ++E + + T G +P
Sbjct: 16 VTLETGEIARQAAAAVKVSMGDTVVLVAVTTNKEVKEGQDFFPLTVDYLERTYAAGKIPG 75
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
R G+Q + R+I R +R + QI+ + + +
Sbjct: 76 GFFKR------EGKQSEKEILTSRLIDRPIRPLFPEGFYHDIQIVAMVVSVDPEIDSDIP 129
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+ GA A G + A G + G +++ E + +D
Sbjct: 130 AMLGASAA-------------LVLSGVPFAGPIGAARVGYVNGVYVLNPTKAELAKSQLD 176
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
T ++ V+ A+ +D + D++ I +
Sbjct: 177 LVVAGTSK-AVLMVESEAKI--LPEDVMLGAVVYGHDQMQAAINAINE 221
>gi|269137419|ref|YP_003294119.1| RNase PH [Edwardsiella tarda EIB202]
gi|267983079|gb|ACY82908.1| RNase PH [Edwardsiella tarda EIB202]
gi|304557493|gb|ADM40157.1| Ribonuclease PH [Edwardsiella tarda FL6-60]
Length = 238
Score = 158 bits (400), Expect = 5e-37, Method: Composition-based stats.
Identities = 120/240 (50%), Positives = 160/240 (66%), Gaps = 2/240 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR GR Q+R + LTR +K+AEGS LV+FGDT +L TA+++E VP +++ GW+T
Sbjct: 1 MRPEGRAAGQIRPLRLTRHYTKHAEGSVLVEFGDTKVLCTASVDEGVPRFLKGQGQGWVT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPRST +R+ REA G+QGGR+ EIQR+I R+LR+ VDL LG I +DCDVIQ
Sbjct: 61 AEYGMLPRSTHSRMAREAAKGKQGGRTMEIQRLIARSLRAAVDLKKLGEFTITLDCDVIQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+ITGA VAL D L + + LKG VAA+S G++ + DL+Y
Sbjct: 121 ADGGTRTASITGACVALADALGALVAAGKLKES--PLKGMVAAVSVGIVADEAVCDLEYV 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
EDS + D N VM + G ++EVQG+AE FS + +L LA+D I +I+ QK +
Sbjct: 179 EDSAAETDMNVVMMEDGRMIEVQGTAEGEPFSHEELLTLLALARDGIGQIIQAQKTALEQ 238
>gi|170743024|ref|YP_001771679.1| polynucleotide phosphorylase/polyadenylase [Methylobacterium sp.
4-46]
gi|226702664|sp|B0UEX5|PNP_METS4 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|168197298|gb|ACA19245.1| Polyribonucleotide nucleotidyltransferase [Methylobacterium sp.
4-46]
Length = 725
Score = 158 bits (400), Expect = 5e-37, Method: Composition-based stats.
Identities = 47/241 (19%), Positives = 91/241 (37%), Gaps = 18/241 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +R I V A GS L G+T L ATL +E+ + T
Sbjct: 316 RIDGRDVRTVRPILSEVGVLPRAHGSALFTRGETQALVVATLGTGDDEQFIDALEGTYKE 375
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + + R+ G + RA+ ++ + + + +
Sbjct: 376 TFLLHYNFPPYSVGETGRMGSPGRREIGHGKL----AWRAVHPLLPPAHEFPYTLRVVSE 431
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A + G+ +AL D + + +L+G A+ +
Sbjct: 432 ITESNGSSSMATVCGSSLALMDAGVPLRRPVAGIAMGLILEGERYAVLSD---------I 482
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T+ G + +Q + A +++ L+ AK+ A ++
Sbjct: 483 LGDEDHLGDMDFKVAGTEEG-VTSLQMDIKIAGITEEIMRVALDQAKEGRAHILGEMAKA 541
Query: 238 I 238
+
Sbjct: 542 L 542
Score = 101 bits (251), Expect = 9e-20, Method: Composition-based stats.
Identities = 34/228 (14%), Positives = 71/228 (31%), Gaps = 27/228 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRN----TKHGWITAEYGML 66
R++ L V++ A+G+ + +G+T +L T ++ I + G +
Sbjct: 14 RKLVLETGKVARQADGAVVASYGETTVLATVVSMKEPKPGIDFLPLTVNYQERAYAAGRI 73
Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
P R GR + + R+I R +R + Q+++ +
Sbjct: 74 PGGYFKR------EGRPSEKETLVSRLIDRPIRPLFVEGWRNDTQVVVTVLSHDLENDPD 127
Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
++ A A G + A G L G ++ E
Sbjct: 128 IVSMVAASAA-------------LTLSGVPFMGPIGAARVGYLGGQYKLNPTVQEMEESS 174
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
+D T ++ V+ A+ +D + +I+
Sbjct: 175 LDLVVAGT-DAAVLMVESEAKE--LPEDVMLGAVMFGHKHFQPVIEAI 219
>gi|294670819|ref|ZP_06735675.1| hypothetical protein NEIELOOT_02522 [Neisseria elongata subsp.
glycolytica ATCC 29315]
gi|291307306|gb|EFE48549.1| hypothetical protein NEIELOOT_02522 [Neisseria elongata subsp.
glycolytica ATCC 29315]
Length = 701
Score = 158 bits (400), Expect = 5e-37, Method: Composition-based stats.
Identities = 46/241 (19%), Positives = 92/241 (38%), Gaps = 18/241 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +R I++ V GS L G+T L ATL +E++ +
Sbjct: 316 RIDGRDTRTVRPINIQTGVLPRTHGSALFTRGETQALAVATLGTSRDEQIIDALSGEYTD 375
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P STG + A R+ G + RAL +V+ S + + +
Sbjct: 376 RFMLHYNFPPYSTGEVGRMGAPKRREIGHGRL----AKRALIAVLPEPEDFSYTMRVVSE 431
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ G ++L ++ + +L+ + A+ +
Sbjct: 432 ITESNGSSSMASVCGGCLSLLSAGVPLKAHVAGIAMGLILENNKFAVLTD---------I 482
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T G + +Q + +++ L AK+ ++ K+
Sbjct: 483 LGDEDHLGDMDFKVAGTTEG-VTALQMDIKIQGITKEIMQIALEQAKEARLYILAQMKEA 541
Query: 238 I 238
+
Sbjct: 542 V 542
Score = 95.7 bits (236), Expect = 5e-18, Method: Composition-based stats.
Identities = 38/234 (16%), Positives = 80/234 (34%), Gaps = 28/234 (11%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT----KHGWITAEYGMLPR 68
++L +++ A + V GDT +L T +++V + T G +P
Sbjct: 16 VTLETGEIARQAAAAVKVSMGDTVVLVAVTADKEVKAGQDFFPLTVDYLERTYAAGKIPG 75
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
R G+Q + R+I R +R + QI+ + + +
Sbjct: 76 GFFKR------EGKQSEKEILTSRLIDRPIRPLFPEGFYHDIQIVAMVVSLDPEIDSDIP 129
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+ GA A G + A G G +++ E +D
Sbjct: 130 AMIGASAA-------------LVLSGVPFAGPIGAARVGYADGAYLLNPTKSELEKSQLD 176
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNEV 242
T + ++ V+ A+ +D + +++ +I + +++EV
Sbjct: 177 LVVAGT-AKAVLMVESEAQI--LPEDVMLGAVVYGHEQMQAVIAAINE-LADEV 226
>gi|254493246|ref|ZP_05106417.1| polynucleotide phosphorylase/polyadenylase [Neisseria gonorrhoeae
1291]
gi|268598511|ref|ZP_06132678.1| polynucleotide phosphorylase/polyadenylase [Neisseria gonorrhoeae
MS11]
gi|268603169|ref|ZP_06137336.1| polynucleotide phosphorylase/polyadenylase [Neisseria gonorrhoeae
PID1]
gi|268683877|ref|ZP_06150739.1| polynucleotide phosphorylase/polyadenylase [Neisseria gonorrhoeae
SK-92-679]
gi|226512286|gb|EEH61631.1| polynucleotide phosphorylase/polyadenylase [Neisseria gonorrhoeae
1291]
gi|268582642|gb|EEZ47318.1| polynucleotide phosphorylase/polyadenylase [Neisseria gonorrhoeae
MS11]
gi|268587300|gb|EEZ51976.1| polynucleotide phosphorylase/polyadenylase [Neisseria gonorrhoeae
PID1]
gi|268624161|gb|EEZ56561.1| polynucleotide phosphorylase/polyadenylase [Neisseria gonorrhoeae
SK-92-679]
Length = 707
Score = 158 bits (400), Expect = 5e-37, Method: Composition-based stats.
Identities = 46/242 (19%), Positives = 93/242 (38%), Gaps = 18/242 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +R +++ V GS L G+T L ATL +E++ +
Sbjct: 317 RIDGRDTRTVRPLNIQTGVLPRTHGSALFTRGETQALAVATLGTSRDEQIIDALSGEYTD 376
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P STG + A R+ G + RAL +V+ S + + +
Sbjct: 377 RFMLHYNFPPYSTGEVGRMGAPKRREIGHGRL----AKRALLAVLPKPEDFSYTMRVVSE 432
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ G ++L ++ + +L+G+ A+ +
Sbjct: 433 ITESNGSSSMASVCGGCLSLLSAGVPLKAHVAGIAMGLILEGNKFAVLTD---------I 483
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T G + +Q + +++ L AK+ ++ K
Sbjct: 484 LGDEDHLGDMDFKVAGTTEG-VTALQMDIKIQGITKEIMQIALAQAKEARLHILDQMKAA 542
Query: 238 IS 239
++
Sbjct: 543 VA 544
Score = 86.8 bits (213), Expect = 2e-15, Method: Composition-based stats.
Identities = 36/228 (15%), Positives = 73/228 (32%), Gaps = 27/228 (11%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT----KHGWITAEYGMLPR 68
++L +++ A + V GDT + T ++V + T G +P
Sbjct: 17 VTLETGEIARQAAAAVKVSMGDTVVFVAVTTNKEVKEGQDFFPLAVDYLERTYAAGKIPG 76
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
R G+Q + R+I R +R + QI+ + + +
Sbjct: 77 GFFKR------EGKQSEKEILTSRLIDRPIRPLFPEGFYHDIQIVAMVVSVDPEIDSDIP 130
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+ GA A G + A G + G +++ E + +D
Sbjct: 131 AMLGASAA-------------LVLSGVPFAGPIGAARVGYINGVYVLNPTKAELAKSQLD 177
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
T ++ V+ A+ +D + D++ I +
Sbjct: 178 LVVAGTSK-AVLMVESEAKI--LPEDVMLGAVVYGHDQMQVAINAINE 222
>gi|59800780|ref|YP_207492.1| polynucleotide phosphorylase/polyadenylase [Neisseria gonorrhoeae
FA 1090]
gi|240120719|ref|ZP_04733681.1| polynucleotide phosphorylase/polyadenylase [Neisseria gonorrhoeae
PID24-1]
gi|268594384|ref|ZP_06128551.1| polyribonucleotide nucleotidyltransferase [Neisseria gonorrhoeae
35/02]
gi|268596381|ref|ZP_06130548.1| polyribonucleotide nucleotidyltransferase [Neisseria gonorrhoeae
FA19]
gi|268600863|ref|ZP_06135030.1| polynucleotide phosphorylase/polyadenylase [Neisseria gonorrhoeae
PID18]
gi|268686120|ref|ZP_06152982.1| polynucleotide phosphorylase/polyadenylase [Neisseria gonorrhoeae
SK-93-1035]
gi|291044327|ref|ZP_06570036.1| polyribonucleotide nucleotidyltransferase [Neisseria gonorrhoeae
DGI2]
gi|293399517|ref|ZP_06643670.1| polyribonucleotide nucleotidyltransferase [Neisseria gonorrhoeae
F62]
gi|75356328|sp|Q5F9Q7|PNP_NEIG1 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|59717675|gb|AAW89080.1| putative polyribonucleotide nucleotidyltransferase [Neisseria
gonorrhoeae FA 1090]
gi|268547773|gb|EEZ43191.1| polyribonucleotide nucleotidyltransferase [Neisseria gonorrhoeae
35/02]
gi|268550169|gb|EEZ45188.1| polyribonucleotide nucleotidyltransferase [Neisseria gonorrhoeae
FA19]
gi|268584994|gb|EEZ49670.1| polynucleotide phosphorylase/polyadenylase [Neisseria gonorrhoeae
PID18]
gi|268626404|gb|EEZ58804.1| polynucleotide phosphorylase/polyadenylase [Neisseria gonorrhoeae
SK-93-1035]
gi|291011221|gb|EFE03217.1| polyribonucleotide nucleotidyltransferase [Neisseria gonorrhoeae
DGI2]
gi|291610086|gb|EFF39208.1| polyribonucleotide nucleotidyltransferase [Neisseria gonorrhoeae
F62]
Length = 707
Score = 158 bits (400), Expect = 5e-37, Method: Composition-based stats.
Identities = 46/242 (19%), Positives = 93/242 (38%), Gaps = 18/242 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +R +++ V GS L G+T L ATL +E++ +
Sbjct: 317 RIDGRDTRTVRPLNIQTGVLPRTHGSALFTRGETQALAVATLGTSRDEQIIDALSGEYTD 376
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P STG + A R+ G + RAL +V+ S + + +
Sbjct: 377 RFMLHYNFPPYSTGEVGRMGAPKRREIGHGRL----AKRALLAVLPKPEDFSYTMRVVSE 432
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ G ++L ++ + +L+G+ A+ +
Sbjct: 433 ITESNGSSSMASVCGGCLSLLSAGVPLKAHVAGIAMGLILEGNKFAVLTD---------I 483
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T G + +Q + +++ L AK+ ++ K
Sbjct: 484 LGDEDHLGDMDFKVAGTTEG-VTALQMDIKIQGITKEIMQIALAQAKEARLHILDQMKAA 542
Query: 238 IS 239
++
Sbjct: 543 VA 544
Score = 86.8 bits (213), Expect = 2e-15, Method: Composition-based stats.
Identities = 36/228 (15%), Positives = 73/228 (32%), Gaps = 27/228 (11%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT----KHGWITAEYGMLPR 68
++L +++ A + V GDT + T ++V + T G +P
Sbjct: 17 VTLETGEIARQAAAAVKVSMGDTVVFVAVTTNKEVKEGQDFFPLAVDYLERTYAAGKIPG 76
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
R G+Q + R+I R +R + QI+ + + +
Sbjct: 77 GFFKR------EGKQSEKEILTSRLIDRPIRPLFPEGFYHDIQIVAMVVSVDPEIDSDIP 130
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+ GA A G + A G + G +++ E + +D
Sbjct: 131 AMLGASAA-------------LVLSGVPFAGPIGAARVGYINGVYVLNPTKAELAKSQLD 177
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
T ++ V+ A+ +D + D++ I +
Sbjct: 178 LVVAGTSK-AVLMVESEAKI--LPEDVMLGAVVYGHDQMQVAINAINE 222
>gi|268681650|ref|ZP_06148512.1| polynucleotide phosphorylase/polyadenylase [Neisseria gonorrhoeae
PID332]
gi|268621934|gb|EEZ54334.1| polynucleotide phosphorylase/polyadenylase [Neisseria gonorrhoeae
PID332]
Length = 707
Score = 158 bits (400), Expect = 5e-37, Method: Composition-based stats.
Identities = 46/242 (19%), Positives = 93/242 (38%), Gaps = 18/242 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +R +++ V GS L G+T L ATL +E++ +
Sbjct: 317 RIDGRDTRTVRPLNIQTGVLPRTHGSALFTRGETQALAVATLGTSRDEQIIDALSGEYTD 376
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P STG + A R+ G + RAL +V+ S + + +
Sbjct: 377 RFMLHYNFPPYSTGEVGRMGAPKRREIGHGRL----AKRALLAVLPKPEDFSYTMRVVSE 432
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ G ++L ++ + +L+G+ A+ +
Sbjct: 433 ITESNGSSSMASVCGGCLSLLSAGVPLKAHVAGIAMGLILEGNKFAVLTD---------I 483
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T G + +Q + +++ L AK+ ++ K
Sbjct: 484 LGDEDHLGDMDFKVAGTTEG-VTALQMDIKIQGITKEIMQIALAQAKEARLHILDQMKAA 542
Query: 238 IS 239
++
Sbjct: 543 VA 544
Score = 86.8 bits (213), Expect = 2e-15, Method: Composition-based stats.
Identities = 36/228 (15%), Positives = 73/228 (32%), Gaps = 27/228 (11%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT----KHGWITAEYGMLPR 68
++L +++ A + V GDT + T ++V + T G +P
Sbjct: 17 VTLETGEIARQAAAAVKVSMGDTVVFVAVTTNKEVKEGQDFFPLAVDYLERTYAAGKIPG 76
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
R G+Q + R+I R +R + QI+ + + +
Sbjct: 77 GFFKR------EGKQSEKEILTSRLIDRPIRPLFPEGFYHDIQIVAMVVSVDPEIDSDIP 130
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+ GA A G + A G + G +++ E + +D
Sbjct: 131 AMLGASAA-------------LVLSGVPFAGPIGAARVGYINGVYVLNPTKAELAKSQLD 177
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
T ++ V+ A+ +D + D++ I +
Sbjct: 178 LVVAGTSK-AVLMVESEAKI--LPEDVMLGAVVYGHDQMQVAINAINE 222
>gi|157783152|ref|YP_001491547.1| defective ribonuclease PH [Escherichia coli str. K-12 substr.
MG1655]
gi|298351814|sp|P0CG19|RNPH_ECOLI RecName: Full=Inactive ribonuclease PH; Short=RNase PH; AltName:
Full=tRNA nucleotidyltransferase
gi|290493|gb|AAA61996.1| RNase PH [Escherichia coli]
gi|157672248|gb|ABV59576.1| defective ribonuclease PH [Escherichia coli str. K-12 substr.
MG1655]
Length = 228
Score = 158 bits (400), Expect = 5e-37, Method: Composition-based stats.
Identities = 118/213 (55%), Positives = 152/213 (71%), Gaps = 2/213 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR +GR NQ+R ++LTR +K+AEGS LV+FGDT +L TA++EE VP +++ GWIT
Sbjct: 1 MRPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWIT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPRST R REA G+QGGR+ EIQR+I RALR+ VDL ALG I +DCDV+Q
Sbjct: 61 AEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+ITGA VAL D LQ + + + +KG VAA+S G++ G + DL+Y
Sbjct: 121 ADGGTRTASITGACVALVDALQKLVEN--GKLKTNPMKGMVAAVSVGIVNGEAVCDLEYV 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQ 213
EDS + D N VMT+ G I+EVQG+AE F+
Sbjct: 179 EDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTH 211
>gi|262038518|ref|ZP_06011887.1| tRNA nucleotidyltransferase [Leptotrichia goodfellowii F0264]
gi|261747387|gb|EEY34857.1| tRNA nucleotidyltransferase [Leptotrichia goodfellowii F0264]
Length = 230
Score = 158 bits (400), Expect = 5e-37, Method: Composition-based stats.
Identities = 110/233 (47%), Positives = 154/233 (66%), Gaps = 3/233 (1%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR+ R+ ++MRE+ +T+ + EGS L++FG+T ++ AT+EEKVP ++R T GWIT
Sbjct: 1 MRV-NRKNDEMREVKVTKNYIMHPEGSVLIEFGNTKVICNATVEEKVPPFLRGTNSGWIT 59
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEY MLPR+T NRV+REA GR GR+ EIQR+IGRALR+ V+L LG R +IIDCDVIQ
Sbjct: 60 AEYSMLPRATNNRVQREANKGRLSGRTMEIQRLIGRALRAAVNLEKLGERTVIIDCDVIQ 119
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+ITG ++AL ++ + D + VAA+S G + ++DL+Y
Sbjct: 120 ADGGTRTASITGGYLALELAIEKLIDK--GKLNEIPINSRVAAVSVGKIKNEILLDLEYE 177
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
ED DVD N +M D G +E+QG+ E ATF+Q+ + ++K L L
Sbjct: 178 EDFRADVDMNIIMNDKGEFIELQGTGEEATFTQEELLKFIEISKKGFEKLFNL 230
>gi|153008079|ref|YP_001369294.1| polynucleotide phosphorylase/polyadenylase [Ochrobactrum anthropi
ATCC 49188]
gi|187610317|sp|A6WWW1|PNP_OCHA4 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|151559967|gb|ABS13465.1| Polyribonucleotide nucleotidyltransferase [Ochrobactrum anthropi
ATCC 49188]
Length = 713
Score = 158 bits (400), Expect = 5e-37, Method: Composition-based stats.
Identities = 45/242 (18%), Positives = 86/242 (35%), Gaps = 18/242 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +R I + GS L G+T + ATL +E++ + T
Sbjct: 317 RIDGRDLKTVRAIVSEVGLLPRTHGSALFTRGETQAIVVATLGTGEDEQMIDALTGTYKE 376
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + + R+ G + RA+ ++ + I +
Sbjct: 377 SFMLHYNFPPYSVGETGRMGSPGRREVGHGKL----AWRAIHPMLPAADQFPYTIRSVSE 432
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A + G +AL D + + + +G A+ +
Sbjct: 433 ITESNGSSSMATVCGTSLALMDAGVPLARPVAGIAMGLIKEGERFAVLSD---------I 483
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D TD+G I +Q + +++ L AK ++
Sbjct: 484 LGDEDHLGDMDFKVAGTDNG-ITALQMDIKIDGITEEIMKVALEQAKGGRVHILGEMAKA 542
Query: 238 IS 239
+S
Sbjct: 543 LS 544
Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats.
Identities = 32/228 (14%), Positives = 72/228 (31%), Gaps = 27/228 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----HGWITAEYGML 66
R ++L +++ A+G+ L +G+T +L T ++ + T G +
Sbjct: 14 RPLTLETGKIARQADGAVLATYGETVVLATVVSAKEPKPGQDFFPLTVNYQEKTYAAGKI 73
Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
P R GR + R+I R +R + Q+++ +
Sbjct: 74 PGGYFKR------EGRPSENETLVSRLIDRPIRPLFVEGYKNDTQVVLTVVQHDLENNPD 127
Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
++ A A G + G + G +++ + E
Sbjct: 128 VLSMVAASAA-------------LTISGVPFMGPIGGARVGYINGEYVLNPNIDEMPESK 174
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
+D T ++ V+ A+ S++ + + +I
Sbjct: 175 LDLVVAGTAD-AVLMVESEAQE--LSEEVMLGAVVFGQKGFQPVIDAI 219
>gi|325133728|gb|EGC56384.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
M13399]
Length = 706
Score = 158 bits (400), Expect = 5e-37, Method: Composition-based stats.
Identities = 46/242 (19%), Positives = 93/242 (38%), Gaps = 18/242 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +R +++ V GS L G+T L ATL +E++ +
Sbjct: 316 RIDGRDTRTVRPLNIQTGVLPRTHGSALFTRGETQALAVATLGTSRDEQIIDALSGEYTD 375
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P STG + A R+ G + RAL +V+ S + + +
Sbjct: 376 RFMLHYNFPPYSTGEVGRVGAPKRREIGHGRL----AKRALLAVLPKPEDFSYTMRVVSE 431
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ G ++L ++ + +L+G+ A+ +
Sbjct: 432 ITESNGSSSMASVCGGCLSLLSAGVPLKAHVAGIAMGLILEGNKFAVLTD---------I 482
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T G + +Q + +++ L AK+ ++ K
Sbjct: 483 LGDEDHLGDMDFKVAGTTEG-VTALQMDIKIQGITKEIMQIALAQAKEARLHILDQMKAA 541
Query: 238 IS 239
++
Sbjct: 542 VA 543
Score = 89.5 bits (220), Expect = 4e-16, Method: Composition-based stats.
Identities = 37/228 (16%), Positives = 75/228 (32%), Gaps = 27/228 (11%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGMLPR 68
++L +++ A + V GDT +L T ++E + + T G +P
Sbjct: 16 VTLETGEIARQAAAAVKVSMGDTVVLVAVTTNKEVKEGQDFFPLTVDYLERTYAAGKIPG 75
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
R G+Q + R+I R +R + QI+ + + +
Sbjct: 76 GFFKR------EGKQSEKEILTSRLIDRPIRPLFPEGFYHDIQIVAMVVSVDPEIDSDIP 129
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+ GA A G + A G + G +++ E + +D
Sbjct: 130 AMLGASAA-------------LVLSGVPFAGPIGAARVGYVNGVYVLNPTKAELAKSQLD 176
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
T ++ V+ A+ +D + D++ I +
Sbjct: 177 LVVAGTSK-AVLMVESEAKI--LPEDVMLGAVVYGHDQMQAAINAINE 221
>gi|167037615|ref|YP_001665193.1| polynucleotide phosphorylase/polyadenylase [Thermoanaerobacter
pseudethanolicus ATCC 33223]
gi|320116030|ref|YP_004186189.1| polyribonucleotide nucleotidyltransferase [Thermoanaerobacter
brockii subsp. finnii Ako-1]
gi|257096712|sp|B0K9P4|PNP_THEP3 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|166856449|gb|ABY94857.1| Polyribonucleotide nucleotidyltransferase [Thermoanaerobacter
pseudethanolicus ATCC 33223]
gi|319929121|gb|ADV79806.1| polyribonucleotide nucleotidyltransferase [Thermoanaerobacter
brockii subsp. finnii Ako-1]
Length = 700
Score = 158 bits (400), Expect = 5e-37, Method: Composition-based stats.
Identities = 48/244 (19%), Positives = 88/244 (36%), Gaps = 18/244 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56
+R+ GR + +R I V GS + G T +LT AT + ++ I + +
Sbjct: 312 IRVDGRGLDDIRPIWCEVGVLPRTHGSAIFTRGQTQVLTVATLGALGDIQILDGIGDEEA 371
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P S G R+ G RAL V+ I +
Sbjct: 372 KRYMHHYNFPPYSVGEVRPLRGPGRREIGHGAL----AERALEPVIPSEEEFPYTIRLVS 427
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V+ ++G T A++ G+ +AL D ++ + + +G V ++
Sbjct: 428 EVLSSNGSTSQASVCGSTLALMDAGVPIKAPVAGVAMGLIKEGDVVSVLTD--------- 478
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T+ G I +Q + ++ L A+ ++ +
Sbjct: 479 IQGIEDFLGDMDFKVAGTEKG-ITAIQMDIKIPGIDKEILKMALEKARRGRLYILSKMLE 537
Query: 237 VISN 240
VI
Sbjct: 538 VIKE 541
Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats.
Identities = 40/234 (17%), Positives = 85/234 (36%), Gaps = 27/234 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKHGWITAEYGML 66
R++ + V++ A G+ VK+GDT +L TA E + + ++ G +
Sbjct: 13 RKLLVQIGKVAQQANGAAWVKYGDTVVLVTACASKEPREGIDFFPLTVEYEERLYSVGKI 72
Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
P R G+ ++ R+I R +R + Q+I + D
Sbjct: 73 PGGFIKR------EGKPSEKAILSARLIDRPIRPLFPHGYRNDVQVIATVLSVDPDVQPE 126
Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
A+ G+ VA G A++ G++ G I++ ++ +
Sbjct: 127 IVAMIGSSVA-------------LSISDIPFNGPTGAVAVGLVDGQFIINPNHEQREKSL 173
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
+ T IV V+ A+ ++ + A + I +++ + ++
Sbjct: 174 MHLVVSGTKD-AIVMVEAGAKE--IPEETMLDAIMYAHEYIKQIVEFIEGIVKE 224
>gi|256396655|ref|YP_003118219.1| ribonuclease PH [Catenulispora acidiphila DSM 44928]
gi|256362881|gb|ACU76378.1| ribonuclease PH [Catenulispora acidiphila DSM 44928]
Length = 243
Score = 158 bits (400), Expect = 5e-37, Method: Composition-based stats.
Identities = 119/237 (50%), Positives = 157/237 (66%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R+ GR+ Q+R ++LTR+ S + EGS LV+FG T +L TA++ E VP W+R + GW+TA
Sbjct: 5 RVDGRKVGQLRPVTLTRKWSIHPEGSVLVEFGQTKVLCTASVTEGVPRWLRGSGKGWVTA 64
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
EY MLPR+T R RE+V G+ GGR+QEI R+IGRALR+VVD ALG II+DCDV+QA
Sbjct: 65 EYAMLPRATNTRGDRESVKGKVGGRTQEISRLIGRALRAVVDTKALGENTIIVDCDVLQA 124
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
DGGTRTAAITGA+VAL D + M D + L G V+A+S G++ G P++DL Y E
Sbjct: 125 DGGTRTAAITGAYVALQDAVTWMRDKKMIKASREPLAGSVSAVSVGIIDGVPMLDLCYEE 184
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
D + D N V T G VEVQG+AE A F + A+L+LA +L Q +
Sbjct: 185 DVRAETDMNVVCTADGKFVEVQGTAEGAPFDRAELDALLDLAAAGCRELASHQVKAL 241
>gi|94496905|ref|ZP_01303479.1| RNase PH [Sphingomonas sp. SKA58]
gi|94423581|gb|EAT08608.1| RNase PH [Sphingomonas sp. SKA58]
Length = 238
Score = 158 bits (400), Expect = 5e-37, Method: Composition-based stats.
Identities = 124/237 (52%), Positives = 161/237 (67%), Gaps = 2/237 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR SGR +QMR I++ + +AEGSCLV FGDT +L TA++EEKVP ++R GW+T
Sbjct: 1 MRPSGRAPDQMRNITMEPGFTIHAEGSCLVSFGDTRVLCTASVEEKVPPFLRGKGSGWVT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPR+T R REA G+Q GR+QEIQR+IGR+LR+VVDL ALG RQI++DCDVIQ
Sbjct: 61 AEYGMLPRATHTRGSREAAKGKQSGRTQEIQRLIGRSLRTVVDLKALGERQIVVDCDVIQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTAAI+G+WVAL + + Q + K VAAISCG+ G P++DLDY
Sbjct: 121 ADGGTRTAAISGSWVALRIAVDKLLASGALTQDPIIQK--VAAISCGIYNGTPVLDLDYA 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
EDS + DAN ++T G EVQ +AE A + ++ +L LA+ A + Q
Sbjct: 179 EDSNAETDANLILTGDGKFAEVQATAEGAAYDEEELLRLLRLARIGCAKIFAAQDAA 235
>gi|91205588|ref|YP_537943.1| polynucleotide phosphorylase/polyadenylase [Rickettsia bellii
RML369-C]
gi|157827302|ref|YP_001496366.1| polynucleotide phosphorylase/polyadenylase [Rickettsia bellii OSU
85-389]
gi|122425576|sp|Q1RIG0|PNP_RICBR RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|187611279|sp|A8GWV2|PNP_RICB8 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|91069132|gb|ABE04854.1| Polyribonucleotide nucleotidyltransferase [Rickettsia bellii
RML369-C]
gi|157802606|gb|ABV79329.1| polynucleotide phosphorylase/polyadenylase [Rickettsia bellii OSU
85-389]
Length = 744
Score = 158 bits (399), Expect = 6e-37, Method: Composition-based stats.
Identities = 44/243 (18%), Positives = 86/243 (35%), Gaps = 18/243 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTT----ATLEEKVPMWIRNTKHG 57
R+ GR +R+I+ + A GS L G+T L + +L+E++ +
Sbjct: 316 RIDGRTTTDIRQITCEVGLLPCAHGSALFTRGETQSLVSSTFGTSLDEQIIDSLEGEYKE 375
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S + +A R+ G + RA+ V+ I + +
Sbjct: 376 RFMLNYIFPPYSVNEAMPMKAPGRREVGHGKL----AWRAVNPVLPTKTQFPYSIRVVAE 431
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+++G + A + G+ +AL ++ + V + A+ +
Sbjct: 432 TTESNGSSSMATVCGSSLALMYAGVPIKAPVAGIAMGLVKEDEKFAVLSD---------I 482
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T G I +Q + + + L A+ +++ V
Sbjct: 483 LGDEDYFGDMDFKVAGTSEG-ITALQMDIKIRGVNFEIMKIALEQARLGRLHILEQMNKV 541
Query: 238 ISN 240
IS
Sbjct: 542 ISK 544
Score = 91.1 bits (224), Expect = 1e-16, Method: Composition-based stats.
Identities = 39/232 (16%), Positives = 81/232 (34%), Gaps = 27/232 (11%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGMLPR 68
+ L+ +++ A+G+ VK G++ LL TA +E + + + + G +P
Sbjct: 16 LELSTGKIARQADGAVTVKMGNSVLLCTAVTAAKAKEGIGFFPLTINYREMAYAAGKIPG 75
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
R G+ R + R+I R +R + + + + +
Sbjct: 76 GFFKR------EGKASDREVLVSRLIDRPIRPLFHPAFVNETFVTCTVLSYDPETPVDIL 129
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
AI GA A VAA G++ G + T +D
Sbjct: 130 AIIGASAA-------------LSLSPAPYLEIVAASKVGLINGEFFLHPTLDLLKTSQLD 176
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
T+ ++ V+ +E S++ A + D ++ + K++ +
Sbjct: 177 LVVAGTND-SVMMVE--SEAHLLSEEQMLAAVKFGFDSFQPVVNIIKELAAE 225
>gi|134095034|ref|YP_001100109.1| polynucleotide phosphorylase/polyadenylase [Herminiimonas
arsenicoxydans]
gi|187610275|sp|A4G647|PNP_HERAR RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|133738937|emb|CAL61984.1| Polyribonucleotide nucleotidyltransferase (Polynucleotide
phosphorylase) (PNPase) [Herminiimonas arsenicoxydans]
Length = 710
Score = 158 bits (399), Expect = 6e-37, Method: Composition-based stats.
Identities = 47/241 (19%), Positives = 89/241 (36%), Gaps = 18/241 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +R I++ V GS L G+T L ATL +E+ +
Sbjct: 320 RIDGRDTRTVRPITIRTGVLPRTHGSALFTRGETQALVIATLGTARDEQKIDALMGEYSD 379
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y M P +TG + R+ G + RAL + + S + + +
Sbjct: 380 RFMLHYNMPPFATGETGRVGTPKRREIGHGRL----AKRALIAALPAPEDFSYSVRLVSE 435
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ G +AL D M+ + + G A+ +
Sbjct: 436 ITESNGSSSMASVCGGCLALMDAGVPMQAHVAGIAMGLIKDGGKFAVLSD---------I 486
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T +G I +Q + +++ L AK+ ++ +
Sbjct: 487 LGDEDHLGDMDFKVAGTANG-ITALQMDIKIQGITKEIMQVALAQAKEGRIHILGEMEKA 545
Query: 238 I 238
+
Sbjct: 546 V 546
Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats.
Identities = 43/232 (18%), Positives = 82/232 (35%), Gaps = 27/232 (11%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT----KHGWITAEYGMLPR 68
++L +++ A G+ LV DT +L T + + T G +P
Sbjct: 16 VTLETGEIARQASGAVLVSIEDTVVLATVVARKDAKPGQDFFPLTVDYVEKTYAAGRIPG 75
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
R GR + R+I R +R + L QIII + + A
Sbjct: 76 GFFKR------EGRPSEKETLTSRLIDRPIRPLFPEGYLNEVQIIIHVMSVNPEIDPDIA 129
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+ GA A G + A G + G I++ + T +D
Sbjct: 130 AMIGASAA-------------LSVSGIPFAGPLGAARVGYIDGQYILNPTATQLKTSQMD 176
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
T++ ++ V+ A++ S++ + D++ +I D++ +
Sbjct: 177 LVVAGTEA-AVLMVESEAQQ--LSEEVMLGAVVFGHDQMKAVIDAIHDLVRD 225
>gi|221640608|ref|YP_002526870.1| polynucleotide phosphorylase/polyadenylase [Rhodobacter sphaeroides
KD131]
gi|254782733|sp|B9KP47|PNP_RHOSK RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|221161389|gb|ACM02369.1| Polyribonucleotide nucleotidyltransferase [Rhodobacter sphaeroides
KD131]
Length = 716
Score = 158 bits (399), Expect = 6e-37, Method: Composition-based stats.
Identities = 46/243 (18%), Positives = 90/243 (37%), Gaps = 17/243 (6%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +R I V GS L G+T L TL +E++ +
Sbjct: 318 RIDGRDTKTVRPIISETSVLPRTHGSALFTRGETQALVVTTLGTGEDEQIIDALHGNSRS 377
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + R+ G + RAL++V+ + I + +
Sbjct: 378 NFLLHYNFPPYSVGEVGRFGPPGRREIGHGKL----AWRALQAVLPAATDFPYTIRVVSE 433
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ G +++ D ++ + +L+ + D+
Sbjct: 434 ITESNGSSSMASVCGGSLSMMDAGVPLKAPVAGVAMGLILEDD--------GKWAVLTDI 485
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T++G I +Q + A + + L AKD ++
Sbjct: 486 LGDEDHLGDMDFKVAGTENG-ITSLQMDIKVAGITPEIMEQALAQAKDGRMHILGEMSKA 544
Query: 238 ISN 240
+S+
Sbjct: 545 LSS 547
Score = 100 bits (248), Expect = 2e-19, Method: Composition-based stats.
Identities = 29/228 (12%), Positives = 61/228 (26%), Gaps = 25/228 (10%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGN 72
++L V++ A+GS + G+T ++ T + E
Sbjct: 16 LTLETGKVARQADGSVIATLGETSVMANVTFAKAAKPGQDFFPLTVHYQERYYAAGKVP- 74
Query: 73 RVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITG 132
R + R+I R +R + +I+ A+
Sbjct: 75 -GGFFKREARPSEKETLTSRLIDRPIRPLFVDGFKNEVLLIVTVLSHDLVNEPDIVAMIA 133
Query: 133 AWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDST------ID 186
A A G + A G G +++ D +
Sbjct: 134 ASAA-------------LTISGVPFMGPIGAARVGFAGGEYVLNPDVDDMQKLRENPEQR 180
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
+D T ++ V+ A S+ + + + +I +
Sbjct: 181 LDLVIAGTKD-AVMMVESEAYE--LSEAEMLGAVKFGHEAMQPVIDMI 225
>gi|323701874|ref|ZP_08113544.1| polyribonucleotide nucleotidyltransferase [Desulfotomaculum
nigrificans DSM 574]
gi|323533178|gb|EGB23047.1| polyribonucleotide nucleotidyltransferase [Desulfotomaculum
nigrificans DSM 574]
Length = 738
Score = 158 bits (399), Expect = 6e-37, Method: Composition-based stats.
Identities = 47/242 (19%), Positives = 93/242 (38%), Gaps = 18/242 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
+R+ GR +++R IS+ V GS L G T +LT ATL +E++ + +
Sbjct: 324 LRIDGRAIDEVRPISVEVGVLARTHGSGLFTRGQTQILTVATLGCVSDEQILDGLGLEET 383
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P STG + R+ G RAL ++ + + +
Sbjct: 384 KRYMHHYNFPPFSTGETKPMRSPGRREIGHGAL----AERALEPMIPPEEVFPYTLRVVS 439
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+ ++++G T ++ G+ +AL D ++ + +++ +
Sbjct: 440 EALESNGSTSMGSVCGSTLALMDAGVPIKAPVAGVAMGLIMEEDQFTVLTD--------- 490
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T +G I +Q + +++ F L A ++ +
Sbjct: 491 IQGLEDHLGDMDFKVAGTANG-ITALQMDIKIPGITREVFEQALAQAYRGRMHILSKMLE 549
Query: 237 VI 238
VI
Sbjct: 550 VI 551
Score = 111 bits (277), Expect = 8e-23, Method: Composition-based stats.
Identities = 43/229 (18%), Positives = 85/229 (37%), Gaps = 26/229 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEE---KVPMWIRNTKHGWITAEYGMLP 67
R+++L ++K A G+ LV +GDT +L TAT+ + + + + G +P
Sbjct: 16 RKLTLETGRLAKQASGAVLVTYGDTMVLVTATVAKNTRDIDFFPLTVDYEERLYAVGKIP 75
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R GR ++ R+I R +R + Q++ + D
Sbjct: 76 GGFIKR------EGRPSEKAILSGRLIDRPIRPLFPKHMRNEVQVVATVLSVDQDNAPEI 129
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
AA+ GA ALH LK + + G + G +++ + D+
Sbjct: 130 AAMIGASAALH-------------ISKIPLKKPIGGVIVGRVDGQFVINPVVRQAENSDM 176
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
T ++ V+ A+ +D + + + +++K D
Sbjct: 177 HLVVAGT-DDAVMMVEAGAKEVP--EDQILEAIMFGHEVVKEVVKFIDD 222
>gi|254713431|ref|ZP_05175242.1| polynucleotide phosphorylase/polyadenylase [Brucella ceti
M644/93/1]
gi|254716212|ref|ZP_05178023.1| polynucleotide phosphorylase/polyadenylase [Brucella ceti M13/05/1]
gi|261217986|ref|ZP_05932267.1| polyribonucleotide nucleotidyltransferase [Brucella ceti M13/05/1]
gi|261321164|ref|ZP_05960361.1| polyribonucleotide nucleotidyltransferase [Brucella ceti M644/93/1]
gi|260923075|gb|EEX89643.1| polyribonucleotide nucleotidyltransferase [Brucella ceti M13/05/1]
gi|261293854|gb|EEX97350.1| polyribonucleotide nucleotidyltransferase [Brucella ceti M644/93/1]
Length = 714
Score = 158 bits (399), Expect = 6e-37, Method: Composition-based stats.
Identities = 45/243 (18%), Positives = 87/243 (35%), Gaps = 18/243 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR + +R I + GS L G+T + ATL +E++ + T
Sbjct: 317 RIDGRDLSTVRSIVSEVGILPRTHGSALFTRGETQAIVVATLGTGEDEQMIDALTGTYKE 376
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + + R+ G + RA+ ++ + I +
Sbjct: 377 SFMLHYNFPPYSVGETGRMGSPGRREIGHGKL----AWRAIHPMLPAAEQFPYTIRAVSE 432
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A + G +AL D + + + +G A+ +
Sbjct: 433 ITESNGSSSMATVCGTSLALMDAGVPIVRPVAGIAMGLIKEGERFAVLSD---------I 483
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T+ G I +Q + +++ L AK ++
Sbjct: 484 LGDEDHLGDMDFKVAGTEFG-ITSLQMDIKIDGITEEIMKVALEQAKGGRVHILGEMAKA 542
Query: 238 ISN 240
IS+
Sbjct: 543 ISS 545
Score = 107 bits (266), Expect = 2e-21, Method: Composition-based stats.
Identities = 33/228 (14%), Positives = 71/228 (31%), Gaps = 27/228 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----HGWITAEYGML 66
R ++L +++ A+G+ L +G+T +L T ++ + T G +
Sbjct: 14 RPLTLETGKIARQADGAVLATYGETAVLATVVSAKEPKPGQDFFPLTVNYQEKTYAAGKI 73
Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
P R GR + R+I R +R + Q++I +
Sbjct: 74 PGGYFKR------EGRPSENETLVSRLIDRPIRPLFVDGYKNDTQVVITVLQHDLENNPD 127
Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
++ A A G ++ G + G +++ + E
Sbjct: 128 ILSMVAASAA-------------LTISGVPFMGPISGARVGYIDGEYVLNPNIDEMPESK 174
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
+D T ++ V+ A+ +D + +I
Sbjct: 175 LDLVVAGTSE-AVLMVESEAQE--LPEDVMLGAVMFGHKSFQPVIDAI 219
>gi|296533820|ref|ZP_06896357.1| polyribonucleotide nucleotidyltransferase [Roseomonas cervicalis
ATCC 49957]
gi|296265856|gb|EFH11944.1| polyribonucleotide nucleotidyltransferase [Roseomonas cervicalis
ATCC 49957]
Length = 735
Score = 158 bits (399), Expect = 6e-37, Method: Composition-based stats.
Identities = 41/242 (16%), Positives = 84/242 (34%), Gaps = 18/242 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
+R+ GR +R I V A GS L G+T L ATL +E++ +
Sbjct: 312 LRIDGRDTKTVRPIMAEVGVLPRAHGSALFTRGETQALAVATLGTGQDEQIIDQLAGEYR 371
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P S + + R+ G + RA+ ++ + +
Sbjct: 372 ENFMLHYNFPPYSVNETGRMGSPGRREIGHGKL----AWRAIHPLLPEKEKFPYTMRVVS 427
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
++ +++G + A + G ++L D ++ + + + A+
Sbjct: 428 EITESNGSSSMATVCGTSLSLMDAGVPLKRPCAGIAMGLIKEEKGFAVLSD--------- 478
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T+ G I +Q + + + + L AK ++
Sbjct: 479 ILGDEDHLGDMDFKVAGTEQG-ITALQMDIKITSITPEIMKIALEQAKGGRLHILGEMAK 537
Query: 237 VI 238
+
Sbjct: 538 GL 539
Score = 108 bits (268), Expect = 1e-21, Method: Composition-based stats.
Identities = 35/233 (15%), Positives = 73/233 (31%), Gaps = 28/233 (12%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----HGWITAEYGMLPR 68
++L V++ A+G+ + + GDT +L T V + G +P
Sbjct: 17 LTLETGKVARQADGAVMARLGDTIVLCTVVGARSVKPGQDFFPLTVNYQEKAFAAGKIPG 76
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
R GR I R+I R +R + Q+I +
Sbjct: 77 GFFKR------EGRPSEAETLISRLIDRPIRPLFPEGFRNEVQVIATVLSHDMENSPDIV 130
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+ G A G V A + G +++ + +D
Sbjct: 131 ALVGCSAA-------------LTLSGIPFFGPVGAARVAYIDGQYVLNPTLEQMKNTQLD 177
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
T G ++ V+ +E + +++ + +I+ + ++ +
Sbjct: 178 LVVAGTAEG-VLMVE--SEASELTEEVMLGAVTFGHQSFQPVIEGIIE-LAEK 226
>gi|206602200|gb|EDZ38682.1| Polyribonucleotide nucleotidyltransferase [Leptospirillum sp. Group
II '5-way CG']
Length = 713
Score = 158 bits (399), Expect = 6e-37, Method: Composition-based stats.
Identities = 47/242 (19%), Positives = 89/242 (36%), Gaps = 18/242 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
+R GR + +R I++ + GS L G+T L+ ATL +E+ +
Sbjct: 319 VRADGRGLSDIRPITIEVGILPRTHGSALFTRGETQSLSVATLGTSDDEQRIDALEGEST 378
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P S G R+ G RAL+ V+ I +
Sbjct: 379 KRFMLHYNFPPFSVGETKPMRGPGRREIGHGNL----AERALKPVLPARDSFPYSIRLVS 434
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
D+++++G + A + G +A+ D ++ + + +G AI
Sbjct: 435 DILESNGSSSMATVCGGSLAMMDAGIPIKSAVAGIAMGLIKEGDRIAILSD--------- 485
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T++G I VQ + + + L A++ +++ K
Sbjct: 486 ILGLEDHLGDMDFKVTGTENG-ITAVQMDIKITGITVELMREALQKAREGRLYIMEKMKM 544
Query: 237 VI 238
+
Sbjct: 545 AL 546
Score = 98.8 bits (244), Expect = 5e-19, Method: Composition-based stats.
Identities = 48/228 (21%), Positives = 79/228 (34%), Gaps = 27/228 (11%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEE----KVPMWIRNTKHGWITAEYGMLPR 68
+ L ++K A+GS +V T ++ TA + V + G +P
Sbjct: 15 VRLETGRMAKQADGSVVVWADGTVVIATAVASKVSKPGVDFLPLTVDYQERAYAAGKIPG 74
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
R G+ R R+I R LR + Q+I I G +
Sbjct: 75 GFFKR------EGKPSEREILNSRLIDRPLRPLFPEGFFFDTQLIASVISIDRGGISDVM 128
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+ + AL+ VAA+ G + G IV+ E +D
Sbjct: 129 AVVASSAALY-------------VSDIPFLNPVAAVKVGCVDGTFIVNPTLDEQERSTLD 175
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
T I+ V+G S++ F + ++LA I LI+ Q+
Sbjct: 176 LVVAGTRD-AIMMVEGQGNE--ISEETFLSAIDLAHKSILPLIEAQEK 220
>gi|319638374|ref|ZP_07993136.1| polyribonucleotide nucleotidyltransferase [Neisseria mucosa C102]
gi|317400123|gb|EFV80782.1| polyribonucleotide nucleotidyltransferase [Neisseria mucosa C102]
Length = 706
Score = 158 bits (399), Expect = 6e-37, Method: Composition-based stats.
Identities = 45/242 (18%), Positives = 92/242 (38%), Gaps = 18/242 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +R +++ V GS L G+T L ATL +E++ +
Sbjct: 316 RIDGRDTRTVRPLNIQTGVLPRTHGSALFTRGETQALAVATLGTSRDEQIIDALSGEYTD 375
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P STG + A R+ G + RAL +V+ S + + +
Sbjct: 376 RFMLHYNFPPYSTGEVGRVGAPKRREIGHGRL----AKRALLAVLPEPEDFSYTMRVVSE 431
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ G ++L ++ + +L + A+ +
Sbjct: 432 ITESNGSSSMASVCGGCLSLLSAGVPLKAHVAGIAMGLILDNNKFAVLTD---------I 482
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T G + +Q + +++ L AK+ +++ K
Sbjct: 483 LGDEDHLGDMDFKVAGTTEG-VTALQMDIKIQGITKEIMQIALAQAKEARLHILEQMKAA 541
Query: 238 IS 239
++
Sbjct: 542 VA 543
Score = 88.7 bits (218), Expect = 6e-16, Method: Composition-based stats.
Identities = 37/228 (16%), Positives = 76/228 (33%), Gaps = 27/228 (11%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGMLPR 68
++L +++ A + V GDT +L T ++E + + T G +P
Sbjct: 16 VTLETGEIARQAAAAVKVSMGDTVVLVAVTTNKEVKEGQDFFPLTVDYLERTYAAGKIPG 75
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
R G+Q + R+I R +R + QI+ + + +
Sbjct: 76 GFFKR------EGKQSEKEILTSRLIDRPIRPLFPEGFYHDIQIVAMVVSVDPEIDSDIP 129
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+ GA A G + A G + G +++ E + +D
Sbjct: 130 AMLGASAA-------------LVLSGVPFAGPIGAARVGYVNGVYVLNPTKAELAKSQLD 176
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
T ++ V+ A+ S++ + D++ I +
Sbjct: 177 LVVAGTSK-AVLMVESEADI--LSEEVMLGAVVYGHDQMQVAINAINE 221
>gi|161869702|ref|YP_001598869.1| polynucleotide phosphorylase/polyadenylase [Neisseria meningitidis
053442]
gi|189037311|sp|A9M3J0|PNP_NEIM0 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|161595255|gb|ABX72915.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
053442]
Length = 706
Score = 158 bits (399), Expect = 6e-37, Method: Composition-based stats.
Identities = 46/242 (19%), Positives = 93/242 (38%), Gaps = 18/242 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +R +++ V GS L G+T L ATL +E++ +
Sbjct: 316 RIDGRDTRTVRPLNIQTGVLPRTHGSALFTRGETQALAVATLGTSRDEQIIDALSGEYTD 375
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P STG + A R+ G + RAL +V+ S + + +
Sbjct: 376 RFMLHYNFPPYSTGEVGRVGAPKRREIGHGRL----AKRALLAVLPKPEDFSYTMRVVSE 431
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ G ++L ++ + +L+G+ A+ +
Sbjct: 432 ITESNGSSSMASVCGGCLSLLSAGVPLKAHVAGIAMGLILEGNKFAVLTD---------I 482
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T G + +Q + +++ L AK+ ++ K
Sbjct: 483 LGDEDHLGDMDFKVAGTTEG-VTALQMDIKIQGITKEIMQIALAQAKEARLHILDQMKAA 541
Query: 238 IS 239
++
Sbjct: 542 VA 543
Score = 89.5 bits (220), Expect = 3e-16, Method: Composition-based stats.
Identities = 37/228 (16%), Positives = 75/228 (32%), Gaps = 27/228 (11%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGMLPR 68
++L +++ A + V GDT +L T ++E + + T G +P
Sbjct: 16 VTLETGEIARQAAAAVKVSMGDTVVLVAVTTNKEVKEGQDFFPLTVDYLERTYAAGKIPG 75
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
R G+Q + R+I R +R + QI+ + + +
Sbjct: 76 GFFKR------EGKQSEKEILTSRLIDRPIRPLFPEGFYHDIQIVAMVVSVDPEIDSDIP 129
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+ GA A G + A G + G +++ E + +D
Sbjct: 130 AMLGASAA-------------LVLSGVPFAGPIGAARVGYINGVYVLNPTKAELAKSQLD 176
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
T ++ V+ A+ +D + D++ I +
Sbjct: 177 LVVAGTSK-AVLMVESEAKI--LPEDVMLGAVVYGHDQMQAAINAINE 221
>gi|257126208|ref|YP_003164322.1| polynucleotide phosphorylase/polyadenylase [Leptotrichia buccalis
C-1013-b]
gi|257050147|gb|ACV39331.1| Polyribonucleotide nucleotidyltransferase [Leptotrichia buccalis
C-1013-b]
Length = 700
Score = 158 bits (399), Expect = 6e-37, Method: Composition-based stats.
Identities = 48/243 (19%), Positives = 86/243 (35%), Gaps = 18/243 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R GRQ ++R I + GS L G+T L ATL +E++ + +
Sbjct: 321 RADGRQTTEIRPIDVEIDTLPVPHGSALFTRGETQALVVATLGSKEDEQIIDGMEDETRK 380
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G A R+ G RAL+ V+ + + +
Sbjct: 381 KFFLHYNFPPYSVGEAGFMRAPGRRELGHGNL----AERALKYVMPEQDKFPYTVRLVSE 436
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A+I G +AL ++ + + +G + +
Sbjct: 437 ITESNGSSSQASICGGSLALMAAGVPIKSTVAGIAMGLIKEGDTFTVLTD---------I 487
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T G I +Q + +++ L A + +I + V
Sbjct: 488 QGLEDHLGDMDFKVAGTKDG-ITAIQMDIKIEGITREIMEIALRQALEGRLFIIDKMEAV 546
Query: 238 ISN 240
IS
Sbjct: 547 ISE 549
Score = 106 bits (263), Expect = 4e-21, Method: Composition-based stats.
Identities = 40/233 (17%), Positives = 78/233 (33%), Gaps = 27/233 (11%)
Query: 13 EISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGMLP 67
+I ++ +++ A GS +V+ G T LL TAT + E + + G P
Sbjct: 15 KIKISTGKIARQAGGSVVVQCGGTMLLVTATRSKDVREGQDFFPLTVDYIEKFYASGKFP 74
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R + G I R+I R +R + L + I++
Sbjct: 75 GGFIKR------ETKPGTDEVLISRLIDRPIRPLFPEGFLNAVHIVVTVLSYDEVNYPEN 128
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
AI G A G VA ++ G + G I++ + ++
Sbjct: 129 LAIIGVSAA-------------LGLSDIPFAGTVAGVTVGYINGEYILNPTGEQLLESEI 175
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
+ T + V+ A+ S++ + ++I ++ Q +
Sbjct: 176 QLSVAGTKD-AVTMVEAGAKE--VSEEVMLEAIMFGHEKIKEICAEQDKFLEQ 225
>gi|167040276|ref|YP_001663261.1| polynucleotide phosphorylase/polyadenylase [Thermoanaerobacter sp.
X514]
gi|256750798|ref|ZP_05491683.1| Polyribonucleotide nucleotidyltransferase [Thermoanaerobacter
ethanolicus CCSD1]
gi|300914360|ref|ZP_07131676.1| polyribonucleotide nucleotidyltransferase [Thermoanaerobacter sp.
X561]
gi|307724404|ref|YP_003904155.1| polyribonucleotide nucleotidyltransferase [Thermoanaerobacter sp.
X513]
gi|257096713|sp|B0K1D0|PNP_THEPX RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|166854516|gb|ABY92925.1| Polyribonucleotide nucleotidyltransferase [Thermoanaerobacter sp.
X514]
gi|256750381|gb|EEU63400.1| Polyribonucleotide nucleotidyltransferase [Thermoanaerobacter
ethanolicus CCSD1]
gi|300889295|gb|EFK84441.1| polyribonucleotide nucleotidyltransferase [Thermoanaerobacter sp.
X561]
gi|307581465|gb|ADN54864.1| polyribonucleotide nucleotidyltransferase [Thermoanaerobacter sp.
X513]
Length = 700
Score = 158 bits (399), Expect = 6e-37, Method: Composition-based stats.
Identities = 48/244 (19%), Positives = 88/244 (36%), Gaps = 18/244 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56
+R+ GR + +R I V GS + G T +LT AT + ++ I + +
Sbjct: 312 IRVDGRGLDDIRPIWCEVGVLPRTHGSAIFTRGQTQVLTVATLGALGDIQILDGIGDEEA 371
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P S G R+ G RAL V+ I +
Sbjct: 372 KRYMHHYNFPPYSVGEVRPLRGPGRREIGHGAL----AERALEPVIPSEEEFPYTIRLVS 427
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V+ ++G T A++ G+ +AL D ++ + + +G V ++
Sbjct: 428 EVLSSNGSTSQASVCGSTLALMDAGVPIKAPVAGVAMGLIKEGDVVSVLTD--------- 478
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T+ G I +Q + ++ L A+ ++ +
Sbjct: 479 IQGIEDFLGDMDFKVAGTEKG-ITAIQMDIKIPGIDKEILKMALEKARRGRLYILSKMLE 537
Query: 237 VISN 240
VI
Sbjct: 538 VIKE 541
Score = 109 bits (272), Expect = 3e-22, Method: Composition-based stats.
Identities = 40/234 (17%), Positives = 85/234 (36%), Gaps = 27/234 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKHGWITAEYGML 66
R++ + V++ A G+ VK+GDT +L TA E + + ++ G +
Sbjct: 13 RKLLVQIGKVAQQANGAAWVKYGDTVVLVTACASKEPREGIDFFPLTVEYEERLYSVGKI 72
Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
P R G+ ++ R+I R +R + Q+I + D
Sbjct: 73 PGGFIKR------EGKPSEKAILSARLIDRPIRPLFPHGYRNDVQVIATVLSVDPDVQPE 126
Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
A+ G+ VA G A++ G++ G I++ ++ +
Sbjct: 127 IVAMIGSSVA-------------LSISDIPFDGPTGAVAVGLVDGQFIINPNHEQREKSL 173
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
+ T IV V+ A+ ++ + A + I +++ + ++
Sbjct: 174 MHLVVSGTKD-AIVMVEAGAKEVP--EETMLDAIMYAHEYIKQIVEFIEGIVKE 224
>gi|325982016|ref|YP_004294418.1| polyribonucleotide nucleotidyltransferase [Nitrosomonas sp. AL212]
gi|325531535|gb|ADZ26256.1| Polyribonucleotide nucleotidyltransferase [Nitrosomonas sp. AL212]
Length = 709
Score = 158 bits (399), Expect = 6e-37, Method: Composition-based stats.
Identities = 46/241 (19%), Positives = 93/241 (38%), Gaps = 18/241 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +R I++ V GS L G+T L ATL +E+ ++ +
Sbjct: 315 RIDGRGTRTVRAITIRNGVLPRTHGSALFTRGETQALAIATLGTARDEQKIDSLQGDYNE 374
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y M P +TG + R+ G + RAL +V+ + + +
Sbjct: 375 RFILHYNMPPYATGEIGRVGTPKRREIGHGRL----AKRALVAVLPPPEEFGYSLRVVSE 430
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ +AL D ++ + + G+ A+ +
Sbjct: 431 ITESNGSSSMASVCSGCLALMDAGVPLKAHVAGIAMGLIKDGNRFAVLTD---------I 481
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T+ G I +Q + +++ A L A + ++++ K
Sbjct: 482 LGDEDHLGDMDFKVAGTEKG-ITALQMDIKIQGITKEIMHAALIQAHEGRMHILQIMKQA 540
Query: 238 I 238
+
Sbjct: 541 L 541
Score = 68.7 bits (166), Expect = 6e-10, Method: Composition-based stats.
Identities = 32/228 (14%), Positives = 71/228 (31%), Gaps = 27/228 (11%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT----KHGWITAEYGMLPR 68
++L +++ A G+ +V DT +L T + + + + G +P
Sbjct: 15 LTLETGEIARQAHGAVVVTMDDTVVLVTVVGAKNIKPGQDFFPLTVDYQERSYAAGRIPG 74
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
S R GR + R+I R +R + QI+ +
Sbjct: 75 SFFKR------EGRPSEKETLTSRLIDRPIRPLFPEGFYNEVQIVATVMSADNEIDPDIP 128
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
+I G A G + A G + +++ E ++
Sbjct: 129 SIIGTSAA-------------LTLSGIPFDGPLGAARVGYINNEYVLNPTTSELKDTQLN 175
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
T ++ V+ +E S++ + +++ +I +
Sbjct: 176 LVVAGTQH-AVLMVE--SEAIELSEEVMLGAVTYGHEQMQIVIDAINE 220
>gi|114329015|ref|YP_746172.1| polynucleotide phosphorylase/polyadenylase [Granulibacter
bethesdensis CGDNIH1]
gi|122326039|sp|Q0BPK3|PNP_GRABC RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|114317189|gb|ABI63249.1| polyribonucleotide nucleotidyltransferase [Granulibacter
bethesdensis CGDNIH1]
Length = 720
Score = 158 bits (399), Expect = 6e-37, Method: Composition-based stats.
Identities = 44/242 (18%), Positives = 87/242 (35%), Gaps = 18/242 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
+R+ GR +R I + A GS L G+T L ATL +E+V +
Sbjct: 314 IRIDGRDTRTVRPIIGEVGILPRAHGSALFTRGETQALCVATLGTGQDEQVVDALTGEYR 373
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P S G + + R+ G + RA+ V+ + +
Sbjct: 374 SHFMLHYNFPPYSVGEAGRMGSPGRREIGHGKL----AWRAVHPVLPAKDAFPYTLRVVS 429
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
++ +++G + A + G+ +AL D ++ + + + A+
Sbjct: 430 EITESNGSSSMATVCGSSLALMDAGVPLKRPVAGIAMGLIKEDRAFAVLSD--------- 480
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T+ G + +Q + + + + L A+D ++
Sbjct: 481 ILGDEDHLGDMDFKVAGTEQG-VTSLQMDIKITSITTEIMRIALQQARDGRMHILGEMAK 539
Query: 237 VI 238
I
Sbjct: 540 AI 541
Score = 120 bits (301), Expect = 1e-25, Method: Composition-based stats.
Identities = 43/243 (17%), Positives = 80/243 (32%), Gaps = 30/243 (12%)
Query: 6 RQENQM--REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEE----KVPMWIRNTKHGW 58
R+E + R + L +++ A+G+ L + GDT +L TA + + +
Sbjct: 6 RKELDLGGRTLVLETGKIARQADGAVLARLGDTIVLCTAVGAKSAKAGQDFFPLTVNYQE 65
Query: 59 ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDV 118
G +P R GR + R+I R +R + Q+I
Sbjct: 66 KAFAAGKIPGGFFKR------EGRPSEHETLVSRLIDRPIRPLFPEGFYNEVQVIATVLS 119
Query: 119 IQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLD 178
+ A+ G A G VAA G++ G +++
Sbjct: 120 HDMENDPDIVALIGCSAA-------------LTLSGIPFFGPVAASRVGLVNGAFVLNPT 166
Query: 179 YGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
+ + +D T G ++ V+ AE S+D A + +I +
Sbjct: 167 LEQRAESKLDLVVAGTAEG-VLMVESEAEE--LSEDQMLAAVEFGHKGFQPVIDAI-IAL 222
Query: 239 SNE 241
+
Sbjct: 223 AEH 225
>gi|126740759|ref|ZP_01756444.1| polynucleotide phosphorylase/polyadenylase [Roseobacter sp.
SK209-2-6]
gi|126718055|gb|EBA14772.1| polynucleotide phosphorylase/polyadenylase [Roseobacter sp.
SK209-2-6]
Length = 705
Score = 158 bits (399), Expect = 6e-37, Method: Composition-based stats.
Identities = 44/243 (18%), Positives = 92/243 (37%), Gaps = 17/243 (6%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR+ +++R+I + GS L G+T L TL +E+ +
Sbjct: 310 RIDGRKTDEIRDIVSETGLLPRTHGSALFTRGETQGLVVTTLGTGDDEQFIDALHGNFKS 369
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + R+ G + RAL++V+ + I + +
Sbjct: 370 NFLLHYNFPPYSVGEVGRVGGPGRREIGHGKL----AWRALQAVLPAATDFPYTIRVVSE 425
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ G +++ D ++ + +L+ + + D+
Sbjct: 426 ITESNGSSSMASVCGGSLSMMDAGVPLKAPVAGVAMGLILEDDGS--------YAILSDI 477
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T+ G I +Q + A + + L AKD ++
Sbjct: 478 LGDEDHLGDMDFKVAGTEKG-ITSLQMDIKVAGITPEIMEKALAQAKDGRLHILGEMAKA 536
Query: 238 ISN 240
++
Sbjct: 537 LTE 539
Score = 103 bits (256), Expect = 2e-20, Method: Composition-based stats.
Identities = 28/222 (12%), Positives = 59/222 (26%), Gaps = 13/222 (5%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGN 72
++L V++ A+GS + G+T ++ T + E
Sbjct: 8 LTLETGKVARQADGSVIATLGETSVMANVTFARQQKPGQDFFPLTVHYQEKYYAAGKVP- 66
Query: 73 RVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITG 132
R + R+I R +R + ++ A+
Sbjct: 67 -GGFFKREARPTEKETLTARLIDRPIRPLFVPGFKNEVLVMCTVLSHDLVNDPDMVAMIA 125
Query: 133 AWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFV 192
A AL ++ +L D + +D
Sbjct: 126 ASAALTLSGAPFMGPIAGARVG-------FEDGEYVLNPTVDDMQDLRLNPEQRLDLVVA 178
Query: 193 MTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
T ++ V+ A S+ + A ++I ++ L
Sbjct: 179 GTKD-AVMMVESEAYE--LSEAEMLGAVKFAHEQIQPVVDLI 217
>gi|269214445|ref|ZP_06158584.1| polyribonucleotide nucleotidyltransferase [Neisseria lactamica ATCC
23970]
gi|269209893|gb|EEZ76348.1| polyribonucleotide nucleotidyltransferase [Neisseria lactamica ATCC
23970]
Length = 707
Score = 158 bits (399), Expect = 6e-37, Method: Composition-based stats.
Identities = 46/242 (19%), Positives = 93/242 (38%), Gaps = 18/242 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +R +++ V GS L G+T L ATL +E++ +
Sbjct: 317 RIDGRDTRTVRPLNIQTGVLPRTHGSALFTRGETQALAVATLGTSRDEQIIDALSGEYTD 376
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P STG + A R+ G + RAL +V+ S + + +
Sbjct: 377 RFMLHYNFPPYSTGEVGRVGAPKRREIGHGRL----AKRALLAVLPKPEDFSYTMRVVSE 432
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ G ++L ++ + +L+G+ A+ +
Sbjct: 433 ITESNGSSSMASVCGGCLSLLSAGVPLKAHVAGIAMGLILEGNKFAVLTD---------I 483
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T G + +Q + +++ L AK+ ++ K
Sbjct: 484 LGDEDHLGDMDFKVAGTTEG-VTALQMDIKIQGITKEIMQIALAQAKEARLHILDQMKAA 542
Query: 238 IS 239
++
Sbjct: 543 VA 544
Score = 89.5 bits (220), Expect = 4e-16, Method: Composition-based stats.
Identities = 37/228 (16%), Positives = 75/228 (32%), Gaps = 27/228 (11%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGMLPR 68
++L +++ A + V GDT +L T ++E + + T G +P
Sbjct: 17 VTLETGEIARQAAAAVKVSMGDTVVLVAVTTNKEVKEGQDFFPLTVDYLERTYAAGKIPG 76
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
R G+Q + R+I R +R + QI+ + + +
Sbjct: 77 GFFKR------EGKQSEKEILTSRLIDRPIRPLFPEGFYHDIQIVAMVVSVDPEIDSDIP 130
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+ GA A G + A G + G +++ E + +D
Sbjct: 131 AMLGASAA-------------LVLSGVPFAGPIGAARVGYVNGVYVLNPTKAELAKSQLD 177
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
T ++ V+ A+ +D + D++ I +
Sbjct: 178 LVVAGTSK-AVLMVESEAKI--LPEDVMLGAVVYGHDQMQAAINAINE 222
>gi|83941735|ref|ZP_00954197.1| polyribonucleotide nucleotidyltransferase [Sulfitobacter sp. EE-36]
gi|83847555|gb|EAP85430.1| polyribonucleotide nucleotidyltransferase [Sulfitobacter sp. EE-36]
Length = 711
Score = 158 bits (399), Expect = 6e-37, Method: Composition-based stats.
Identities = 46/242 (19%), Positives = 92/242 (38%), Gaps = 17/242 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR+ +++R+I + GS L G+T L TL +E+ +
Sbjct: 318 RIDGRKTDEIRDIVAETGILPRTHGSSLFTRGETQGLVVTTLGTGDDEQFIDALHGNFKS 377
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + R+ G + RAL++V+ S I + +
Sbjct: 378 NFMLHYNFPPYSVGEVGRVGGPGRREIGHGKL----AWRALQAVLPASTDFPYTIRVVSE 433
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ G +++ D ++ + +L+ + + D+
Sbjct: 434 ITESNGSSSMASVCGGSLSMMDAGVPLKAPVAGVAMGLILEDDGS--------YAILSDI 485
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T++G I +Q + A + + L AK ++
Sbjct: 486 LGDEDHLGDMDFKVAGTEAG-ITSLQMDIKIAGITPEIMEKALAQAKAGRVHILGEMNKA 544
Query: 238 IS 239
IS
Sbjct: 545 IS 546
Score = 107 bits (266), Expect = 1e-21, Method: Composition-based stats.
Identities = 30/228 (13%), Positives = 63/228 (27%), Gaps = 25/228 (10%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGN 72
++L V++ A+GS + G+T ++ T + E
Sbjct: 16 LTLETGKVARQADGSVIATLGETSVMANVTFARQQKPGQDFFPLTVHYQEKYYAAGKVP- 74
Query: 73 RVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITG 132
R + R+I R +R + ++ A+
Sbjct: 75 -GGFFKREARPTEKETLTARLIDRPIRPLFVPGFKNEVLVMCTVLSHDLVNDPDMVAMIA 133
Query: 133 AWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGED------STID 186
A A +G + A G G +++ +
Sbjct: 134 ASAA-------------LTISGAPFRGPIGACRVGFEDGDYVLNPTVDDMQDLRLNPDQR 180
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
+D T ++ V+ A S++ + A ++I +I L
Sbjct: 181 LDLVVAGTKE-AVMMVESEAYE--LSEEEMLGAVKFAHEQIQPVIDLI 225
>gi|302338543|ref|YP_003803749.1| polyribonucleotide nucleotidyltransferase [Spirochaeta smaragdinae
DSM 11293]
gi|301635728|gb|ADK81155.1| polyribonucleotide nucleotidyltransferase [Spirochaeta smaragdinae
DSM 11293]
Length = 697
Score = 158 bits (399), Expect = 6e-37, Method: Composition-based stats.
Identities = 50/242 (20%), Positives = 84/242 (34%), Gaps = 10/242 (4%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+R GR +R I+ + A GS L G+T L TL + + G T
Sbjct: 312 VRTDGRDLETVRPITCEVGILDRAHGSALFTRGETQSLAVTTLGTVYDEQMMDNIDGDKT 371
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
E ML + E G R + RAL +V+ I + ++++
Sbjct: 372 YENFMLHYNFPPFSVGETGRLTTGRREIGHGHLAHRALEAVLPQKKDFPYTIRVVSEILE 431
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
++G + A + G ++L + + V +G AA+ +
Sbjct: 432 SNGSSSMATVCGGTLSLLHAGVPIRKPVAGIAMGLVSEGDRAAVLTD---------ILGE 482
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
ED D+D T+ G I Q + A S D L AK ++ + +
Sbjct: 483 EDHLGDMDFKVAGTEDG-ITAFQMDIKIAGISSDLMKRALEQAKKGRMHILGIMNATLKE 541
Query: 241 EV 242
V
Sbjct: 542 PV 543
Score = 94.1 bits (232), Expect = 2e-17, Method: Composition-based stats.
Identities = 39/237 (16%), Positives = 77/237 (32%), Gaps = 29/237 (12%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----HGWITAEYGML 66
R++ L ++K A G+ K+ + +L T + + G +
Sbjct: 12 RDLILETGRMAKQANGAVFAKYEGSAVLATVCCGSSPMESLDFVPLQVEYNEKYYAAGKI 71
Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
P R GR + + R+I R +R + QII
Sbjct: 72 PGGFLKR------EGRPKDKEILVSRLIDRPMRPLFSKEFKRELQIIPTTVSADQINPPD 125
Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
A+ A A+ G V A+ + I++ + + S
Sbjct: 126 IVAMNAASAAVC-------------VSDIPFAGPVGAVRIANVDDELIINPSFDQISRCT 172
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD--VISNE 241
++ T G I V+G A+ ++ + + LA+ I L + Q+ ++ +
Sbjct: 173 LEIVVSGTKDG-ITMVEGGAKEVP--EELLLSAIALAEPAIKKLCEAQEQLMALAGK 226
>gi|241758689|ref|ZP_04756802.1| polyribonucleotide nucleotidyltransferase [Neisseria flavescens
SK114]
gi|241320897|gb|EER57110.1| polyribonucleotide nucleotidyltransferase [Neisseria flavescens
SK114]
Length = 706
Score = 158 bits (399), Expect = 6e-37, Method: Composition-based stats.
Identities = 45/242 (18%), Positives = 91/242 (37%), Gaps = 18/242 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +R +++ V GS L G+T L ATL +E++ +
Sbjct: 316 RIDGRDTRTVRPLNIQTGVLPRTHGSALFTRGETQALAVATLGTSRDEQIIDALSGEYTD 375
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P STG + A R+ G + RAL +V+ S + + +
Sbjct: 376 RFMLHYNFPPYSTGEVGRVGAPKRREIGHGRL----AKRALLAVLPEPEDFSYTMRVVSE 431
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ G ++L ++ + +L + A+ +
Sbjct: 432 ITESNGSSSMASVCGGCLSLLSAGVPLKAHVAGIAMGLILDNNKFAVLTD---------I 482
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T G + +Q + +++ L AK+ ++ K
Sbjct: 483 LGDEDHLGDMDFKVAGTTEG-VTALQMDIKIQGITKEIMQIALAQAKEARLHILDQMKAA 541
Query: 238 IS 239
++
Sbjct: 542 VA 543
Score = 88.7 bits (218), Expect = 6e-16, Method: Composition-based stats.
Identities = 37/228 (16%), Positives = 76/228 (33%), Gaps = 27/228 (11%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGMLPR 68
++L +++ A + V GDT +L T ++E + + T G +P
Sbjct: 16 VTLETGEIARQAAAAVKVSMGDTVVLVAVTTNKEVKEGQDFFPLTVDYLERTYAAGKIPG 75
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
R G+Q + R+I R +R + QI+ + + +
Sbjct: 76 GFFKR------EGKQSEKEILTSRLIDRPIRPLFPEGFYHDIQIVAMVVSVDPEIDSDIP 129
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+ GA A G + A G + G +++ E + +D
Sbjct: 130 AMLGASAA-------------LVLSGVPFAGPIGAARVGYVNGVYVLNPTKAELAKSQLD 176
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
T ++ V+ A+ S++ + D++ I +
Sbjct: 177 LVVAGTSK-AVLMVESEADI--LSEEVMLGAVVYGHDQMQVAINAINE 221
>gi|53804618|ref|YP_113771.1| polynucleotide phosphorylase/polyadenylase [Methylococcus
capsulatus str. Bath]
gi|81682222|sp|Q609C6|PNP_METCA RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|53758379|gb|AAU92670.1| polyribonucleotide nucleotidyltransferase [Methylococcus capsulatus
str. Bath]
Length = 691
Score = 158 bits (399), Expect = 6e-37, Method: Composition-based stats.
Identities = 41/241 (17%), Positives = 88/241 (36%), Gaps = 18/241 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR + +R I++ V GS L G+T L ATL + ++ +
Sbjct: 313 RIDGRDLSTVRPITIRTGVLPRTHGSALFTRGETQALVVATLGTGRDAQLIDALEGEYKE 372
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P G + R+ G + R +++++ I I +
Sbjct: 373 NFMLHYNFPPYCVGETGAIGSPKRREIGHGRL----AKRGVQAIMPTMDEFPYVIRIVSE 428
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ G+ +AL D + + +L+G A+ ++
Sbjct: 429 ITESNGSSSMASVCGSSLALMDAGVPTKGAVAGIAMGLILEGEEFAVLSDIM-------- 480
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T G + +Q + + + L+ A++ ++
Sbjct: 481 -GDEDHLGDMDFKVAGTRDG-VTALQMDIKIDGITPEIMRQALHQAREGRMHILDKMAQA 538
Query: 238 I 238
+
Sbjct: 539 L 539
Score = 72.2 bits (175), Expect = 6e-11, Method: Composition-based stats.
Identities = 30/242 (12%), Positives = 72/242 (29%), Gaps = 44/242 (18%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTAT------------LEEKVPMWIRNTKHGWIT 60
+S +++ A+ + +V A + +
Sbjct: 15 VSFETGEIARQADAAVMVDM--------AGTVVLVTVVGRKDASPHGDFFPLTVNYQEKA 66
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
G +P R GR + R+I R +R + Q++ +
Sbjct: 67 YAAGRIPGGFFKR------EGRPSEKETLTARLIDRPIRPLFPDGFTHEVQVVATVMSLN 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
+ ++ GA A KG + A G + G +++ D
Sbjct: 121 PEVDPDIPSMLGASAA-------------LTLSGLPFKGPIGAARVGFVNGAYVLNPDGS 167
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
++D T + ++ V+ A+ ++ + +++ I+ + ++
Sbjct: 168 VVEGSELDLVVAGTAN-AVLMVESEAKI--LPEEVMLGAVVFGHEQMQTAIRAINE-LAE 223
Query: 241 EV 242
EV
Sbjct: 224 EV 225
>gi|13474634|ref|NP_106203.1| polynucleotide phosphorylase/polyadenylase [Mesorhizobium loti
MAFF303099]
gi|81778152|sp|Q98BI3|PNP_RHILO RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|14025388|dbj|BAB51989.1| polyribonucleotide nucleotidyltransferase [Mesorhizobium loti
MAFF303099]
Length = 715
Score = 158 bits (399), Expect = 6e-37, Method: Composition-based stats.
Identities = 45/241 (18%), Positives = 87/241 (36%), Gaps = 18/241 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +R+I V GS L G+T L ATL +E+ +
Sbjct: 317 RIDGRDLKTVRKIVSEVGVLPRTHGSALFTRGETQALVVATLGTGEDEQYVDSLTGMYKE 376
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + + R+ G + RA+R ++ + + + +
Sbjct: 377 KFLLHYNFPPYSVGETGRMGSPGRREIGHGKL----AWRAIRPMLPSADQFPYTLRVVSE 432
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A + G +AL D + + + +G A+ +
Sbjct: 433 ITESNGSSSMATVCGTSLALMDAGVPLAKPVAGIAMGLIKEGERFAVLSD---------I 483
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T +G I +Q + +++ L+ AKD ++
Sbjct: 484 LGDEDHLGDMDFKVAGTANG-ITSLQMDIKIEGITEEIMKIALDQAKDGRQHILGEMAHA 542
Query: 238 I 238
+
Sbjct: 543 L 543
Score = 111 bits (277), Expect = 8e-23, Method: Composition-based stats.
Identities = 33/228 (14%), Positives = 69/228 (30%), Gaps = 27/228 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----HGWITAEYGML 66
R + L +++ A+G+ L +G+T +L T ++ + + T G +
Sbjct: 14 RPLILETGKIARQADGAVLATYGETKVLATVVSMKEPKPGLDFFPLTVNYQEKTYAAGKI 73
Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
P R GR + + R+I R +R + QI++ +
Sbjct: 74 PGGYFKR------EGRPSEKETLVSRLIDRPIRPLFADGYKNDTQIVVTVVQHDLENDPD 127
Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
+I A G V G + G +++ E
Sbjct: 128 ILSIVATSAA-------------LTLSGVPFMGPVGGARVGYINGEYVLNPHIDEMQESK 174
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
+D T ++ V+ A+ ++ + +I
Sbjct: 175 LDLVVAGTAD-AVLMVESEAKE--LGEELMLGAVMFGHKGFQPVIDAI 219
>gi|56707819|ref|YP_169715.1| polynucleotide phosphorylase/polyadenylase [Francisella tularensis
subsp. tularensis SCHU S4]
gi|110670290|ref|YP_666847.1| polynucleotide phosphorylase/polyadenylase [Francisella tularensis
subsp. tularensis FSC198]
gi|224456890|ref|ZP_03665363.1| polynucleotide phosphorylase/polyadenylase [Francisella tularensis
subsp. tularensis MA00-2987]
gi|254370315|ref|ZP_04986320.1| hypothetical protein [Francisella tularensis subsp. tularensis
FSC033]
gi|254874633|ref|ZP_05247343.1| polyribonucleotide nucleotidyltransferase [Francisella tularensis
subsp. tularensis MA00-2987]
gi|81597693|sp|Q5NGX7|PNP_FRATT RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|123169466|sp|Q14IC9|PNP_FRAT1 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|56604311|emb|CAG45332.1| polyribonucleotide nucleotidyltransferase [Francisella tularensis
subsp. tularensis SCHU S4]
gi|110320623|emb|CAL08715.1| polyribonucleotide nucleotidyltransferase [Francisella tularensis
subsp. tularensis FSC198]
gi|151568558|gb|EDN34212.1| hypothetical protein FTBG_00070 [Francisella tularensis subsp.
tularensis FSC033]
gi|254840632|gb|EET19068.1| polyribonucleotide nucleotidyltransferase [Francisella tularensis
subsp. tularensis MA00-2987]
gi|282158995|gb|ADA78386.1| polynucleotide phosphorylase/polyadenylase [Francisella tularensis
subsp. tularensis NE061598]
Length = 693
Score = 158 bits (399), Expect = 7e-37, Method: Composition-based stats.
Identities = 41/244 (16%), Positives = 85/244 (34%), Gaps = 17/244 (6%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +R I++ V GS L G+T L TL + ++ + +
Sbjct: 317 RIDGRCTETIRPINVKIGVLPGVHGSALFTRGETQALVVTTLGSDRDAQLVESLDGIEKC 376
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G R R + RA ++V + + +
Sbjct: 377 RYMLHYNFPPYSVGECGMVGMAPKR---REIGHANLAKRATQAVFPNEEAYPYVVRVVSE 433
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+++++G + A + G+ +++ D + + + + G A+ +
Sbjct: 434 ILESNGSSSMATVCGSSLSMMDAGVPIAEPVAGIAMGLIKDGAKYAVLSD---------I 484
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T G + +Q + S++ L A+ ++ + +V
Sbjct: 485 LGDEDHLGDMDFKVAGTRYG-VTALQMDIKIKGISREILEQALEQARAGRLHILGIMNEV 543
Query: 238 ISNE 241
I
Sbjct: 544 IKEH 547
Score = 80.3 bits (196), Expect = 2e-13, Method: Composition-based stats.
Identities = 36/228 (15%), Positives = 69/228 (30%), Gaps = 27/228 (11%)
Query: 13 EISLTRR-VSKYAEGSCLVKFG----DTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLP 67
EI L +++ A+GS V G + ++ + + + + T G +P
Sbjct: 14 EIILETGGMARQADGSVTVSCGNNVVLVTTVVKKSVADGTDFFPLSVHYLEKTYAAGKIP 73
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R GR I R+I R++R QI+
Sbjct: 74 GGFLRR------EGRPSEEQILISRLIDRSIRPSFPDGFFNEIQIVATVLSYDGAFSPDI 127
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
A+ G ++ VA + G G I++ + + D+
Sbjct: 128 LALIG-------------ASASLAISGAPYDDVVAGVRVGYTNGKYILNPNKQDLRDSDL 174
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
D T I+ V+ +E + + + A + +I
Sbjct: 175 DLVVSGT-DDAILMVE--SEANSLPESVMLGGILYAHKHLKTIINSIN 219
>gi|94969022|ref|YP_591070.1| polynucleotide phosphorylase/polyadenylase [Candidatus Koribacter
versatilis Ellin345]
gi|123381514|sp|Q1IQ54|PNP_ACIBL RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|94551072|gb|ABF40996.1| 3' exoribonuclease [Candidatus Koribacter versatilis Ellin345]
Length = 815
Score = 158 bits (399), Expect = 7e-37, Method: Composition-based stats.
Identities = 48/243 (19%), Positives = 84/243 (34%), Gaps = 18/243 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R GR +Q+R+I + V GS + G+T L T TL + +
Sbjct: 318 RPDGRAFDQIRQIWIEVDVLPRTHGSAVFTRGETQALVTTTLGTGDDMQRMEGFEGEAKK 377
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G R+ G RAL +V+ + + D
Sbjct: 378 RFMLHYNFPPFSVGEVAFLRGAGRREIGHGAL----AERALSAVLPSEDKWPYAMRVVSD 433
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+++++G + A+I G ++L D ++ + V +G AI +
Sbjct: 434 ILESNGSSSMASICGGSLSLMDAGVPLKAPVAGIAMGLVKEGDDYAILTD---------I 484
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T G I +Q + + L A+ ++ +V
Sbjct: 485 AGAEDHYGDMDFKVAGTTQG-ITALQMDIKIGGITAQIMREALEQARRGRLFILDKMNEV 543
Query: 238 ISN 240
I +
Sbjct: 544 IQS 546
Score = 111 bits (278), Expect = 8e-23, Method: Composition-based stats.
Identities = 43/230 (18%), Positives = 74/230 (32%), Gaps = 20/230 (8%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGN 72
+S ++K A GS +V+ G + +L TA I EY
Sbjct: 18 LSFETGKLAKQAHGSAIVRSGQSVVLATACANADPREGIDFFPLTVDYREYTYAGGRFP- 76
Query: 73 RVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITG 132
GR + R I R +R + Q+I ++ I G
Sbjct: 77 -GGFIKREGRPSEKEILTSRQIDRPIRPLFPEGFRCETQVIAMVLSADSENDPDVCGING 135
Query: 133 AWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFV 192
A A G + A+ G++ G IV+ Y E ++ V
Sbjct: 136 ASAA-------------LAVSDIPFNGPIGAVRVGLIEGQNIVNPTYDEMRASKLNIMVV 182
Query: 193 MTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNEV 242
T G IV ++ A A +++ + + I + + ++ EV
Sbjct: 183 GTAEG-IVMIESGAHEA--TEEEVVSAIEFGHGEIKKICAVISK-LAKEV 228
>gi|269213998|ref|ZP_05983355.2| polyribonucleotide nucleotidyltransferase [Neisseria cinerea ATCC
14685]
gi|269144760|gb|EEZ71178.1| polyribonucleotide nucleotidyltransferase [Neisseria cinerea ATCC
14685]
Length = 707
Score = 158 bits (399), Expect = 7e-37, Method: Composition-based stats.
Identities = 45/242 (18%), Positives = 91/242 (37%), Gaps = 18/242 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +R +++ V GS L G+T L ATL +E++ +
Sbjct: 317 RIDGRDTRTVRPLNIQTGVLPRTHGSALFTRGETQALAVATLGTSRDEQIIDALSGEYTD 376
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P STG + A R+ G + RAL +V+ S + + +
Sbjct: 377 RFMLHYNFPPYSTGEVGRVGAPKRREIGHGRL----AKRALLAVLPKPEDFSYTMRVVSE 432
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ G ++L ++ + +L + A+ +
Sbjct: 433 ITESNGSSSMASVCGGCLSLLSAGVPLKAHVAGIAMGLILDNNKFAVLTD---------I 483
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T G + +Q + +++ L AK+ ++ K
Sbjct: 484 LGDEDHLGDMDFKVAGTTEG-VTALQMDIKIQGITKEIMQIALAQAKEARLHILDQMKAA 542
Query: 238 IS 239
++
Sbjct: 543 VA 544
Score = 88.7 bits (218), Expect = 6e-16, Method: Composition-based stats.
Identities = 37/228 (16%), Positives = 76/228 (33%), Gaps = 27/228 (11%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGMLPR 68
++L +++ A + V GDT +L T ++E + + T G +P
Sbjct: 17 VTLETGEIARQAAAAVKVSMGDTVVLVAVTTNKEVKEGQDFFPLTVDYLERTYAAGKIPG 76
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
R G+Q + R+I R +R + QI+ + + +
Sbjct: 77 GFFKR------EGKQSEKEILTSRLIDRPIRPLFPEGFYHDIQIVAMVVSVDPEIDSDIP 130
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+ GA A G + A G + G +++ E + +D
Sbjct: 131 AMLGASAA-------------LVLSGVPFAGPIGAARVGYVNGVYVLNPTKAELAKSQLD 177
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
T ++ V+ A+ S++ + D++ I +
Sbjct: 178 LVVAGTSK-AVLMVESEADI--LSEEVMLGAVVYGHDQMQVAINAINE 222
>gi|325290354|ref|YP_004266535.1| Polyribonucleotide nucleotidyltransferase [Syntrophobotulus
glycolicus DSM 8271]
gi|324965755|gb|ADY56534.1| Polyribonucleotide nucleotidyltransferase [Syntrophobotulus
glycolicus DSM 8271]
Length = 713
Score = 158 bits (399), Expect = 7e-37, Method: Composition-based stats.
Identities = 47/244 (19%), Positives = 91/244 (37%), Gaps = 18/244 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
+R GR +++R I++ GS + G T ++T ATL +E++ + +
Sbjct: 322 IRPDGRALDEIRPITVEVAALPRTHGSAVFTRGQTQVMTVATLGAVSDEQIIDGLGLEES 381
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P S G A R+ G RAL ++ A + +
Sbjct: 382 KRYMHHYNFPPFSVGEVRPMRAPGRREIGHGNL----AERALIPMIPGEAEFPYTLRLVS 437
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V++++G + A++ G+ +AL D ++ + + + AI
Sbjct: 438 EVLESNGSSSMASVCGSTLALMDAGVPIKAPVAGIAMGLIQEESQYAILSD--------- 488
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T G + +Q + S++ L AK+ ++
Sbjct: 489 IQGLEDHDGDMDFKVAGTAKG-VTALQMDIKIKGVSREILAQALKQAKEGRMFILDKMLA 547
Query: 237 VISN 240
VI
Sbjct: 548 VIGE 551
Score = 101 bits (251), Expect = 9e-20, Method: Composition-based stats.
Identities = 39/230 (16%), Positives = 79/230 (34%), Gaps = 27/230 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKHGWITAEYGML 66
R +S + + A G+ +K+GDT + AT E + + + G +
Sbjct: 15 RTMSFETGRIGRQAGGAIFLKYGDTVVSAFATASSKPREGIDFFPLTCEFEERLYAAGKI 74
Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
P R GR ++ R+I R +R + Q++ + D T
Sbjct: 75 PGGFIKR------EGRPSEKATLTARLIDRPIRPLFPEGYQNDVQVVTMVMSVDQDCPTD 128
Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
+AI A A + +G +A + G++ G +++ + +
Sbjct: 129 VSAINAASAA-------------LTISNIPFEGPIAGVIVGLVDGQFVINPTVDQAARSQ 175
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ T IV V+ A S++ + A + I + + +
Sbjct: 176 MYLTVAGTKD-AIVMVEAGANE--ISEEQMLDAMIFAHEEIKKIAEFIEQ 222
>gi|257457660|ref|ZP_05622827.1| polyribonucleotide nucleotidyltransferase [Treponema vincentii ATCC
35580]
gi|257445046|gb|EEV20122.1| polyribonucleotide nucleotidyltransferase [Treponema vincentii ATCC
35580]
Length = 703
Score = 158 bits (399), Expect = 7e-37, Method: Composition-based stats.
Identities = 47/244 (19%), Positives = 83/244 (34%), Gaps = 19/244 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
+R+ GR +R I+ V GS + G+T L TL +E+V I +
Sbjct: 318 LRVDGRGLEDIRPITCEIGVLPRPHGSAVFTRGETQSLAVVTLGTVFDEQVYDDIEGDRR 377
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P S G + R+ G R+L ++ I +
Sbjct: 378 ENFILHYNFPPYSVGEVGRLGTGR-REIGHGHL----AHRSLMPMIPSREAFPYTIRVVS 432
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
++++++G + A + G ++L M+ + + G A+
Sbjct: 433 EILESNGSSSMATVCGGTLSLLHAGVPMKKPVAGIAMGLITDGSRFAVLSD--------- 483
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T G I Q + A S + L AK ++ +
Sbjct: 484 ILGEEDHLGDMDFKVAGTAEG-ITGFQMDIKIAGVSAEIMKKALEQAKKGRLHILGIMNQ 542
Query: 237 VISN 240
IS
Sbjct: 543 TISK 546
Score = 99.1 bits (245), Expect = 4e-19, Method: Composition-based stats.
Identities = 42/229 (18%), Positives = 76/229 (33%), Gaps = 27/229 (11%)
Query: 13 EISLTRR-VSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKHGWITAEYGMLP 67
E+ L ++K A G+ ++G T +L T E + + G +P
Sbjct: 18 ELILETGHLAKQANGAIYAQYGGTAVLATVCASSTAVEGLDYVPVTVDYNEKYYAAGKIP 77
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R GR + + R+I R +R + + + QI+ C
Sbjct: 78 GGFIKR------EGRPKDKEILVSRLIDRPMRPLFEKAFGREIQIVPTCISSDMINPPDI 131
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
A+ + A+ G VA L G +++ + + D+
Sbjct: 132 LAVIASSAAV-------------VISDIPFNGPVAGARVAYLDGEFVINPTFSQIEKADM 178
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ T G I V+G A S++ L A + I + LQ +
Sbjct: 179 EIVVAGTAEG-ITMVEGGAHE--VSEEIMLKALEKAHEFIKAMCALQNE 224
>gi|237745432|ref|ZP_04575912.1| polyribonucleotide nucleotidyltransferase [Oxalobacter formigenes
HOxBLS]
gi|229376783|gb|EEO26874.1| polyribonucleotide nucleotidyltransferase [Oxalobacter formigenes
HOxBLS]
Length = 707
Score = 158 bits (399), Expect = 7e-37, Method: Composition-based stats.
Identities = 44/240 (18%), Positives = 91/240 (37%), Gaps = 18/240 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +R I++ V GS L G+T L ATL + + +
Sbjct: 320 RIDGRDTRTVRPITIRTGVLPRTHGSALFTRGETQALVVATLGTSRDNQKIDALMGEYSD 379
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y M P +TG + R+ G + RAL + + S I + +
Sbjct: 380 AFMMHYNMPPFATGETGRVGTPKRREIGHGRL----AKRALVACLPSQDEFSYSIRLVSE 435
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+++++G + A++ G +AL D ++ + + +G+ A+ +
Sbjct: 436 IMESNGSSSMASVCGGSLALMDAGVPVKTHVAGIAMGLIKEGNKFAVLTD---------I 486
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T +G + +Q + +++ L A++ ++ ++
Sbjct: 487 LGDEDHLGDMDFKVAGTSTG-VTALQMDIKIQGITKEIMQVALAQAREGRMHILGKMQEA 545
Score = 109 bits (271), Expect = 5e-22, Method: Composition-based stats.
Identities = 36/232 (15%), Positives = 79/232 (34%), Gaps = 27/232 (11%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT----KHGWITAEYGMLPR 68
++L +++ A G+ +V DT +L T ++ V + + G +P
Sbjct: 16 VTLETGEIARQASGAVVVSMDDTVVLATVVAKDDVKPGQDFFPLTVDYIEKSYAAGRIPG 75
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
S R GR + R+I R +R + Q+II + +
Sbjct: 76 SFFKR------EGRPSEKETLTSRLIDRPIRPLFPDGYFNEVQVIIHVLSVNPEIDPDIP 129
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
++ A AL G + A G + G +++ + +D
Sbjct: 130 SMIAASAALC-------------VSGIPFNGPLGAARVGYIDGQYVLNPTASQLPLSQLD 176
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
T+ ++ V+ A+ +D + +++ +I +++S
Sbjct: 177 LVVAGTEQ-AVLMVESEAKE--LPEDVMLGAVVFGHEQMKVVIDAIDELVSE 225
>gi|300813206|ref|ZP_07093574.1| tRNA nucleotidyltransferase [Peptoniphilus sp. oral taxon 836 str.
F0141]
gi|300512659|gb|EFK39791.1| tRNA nucleotidyltransferase [Peptoniphilus sp. oral taxon 836 str.
F0141]
Length = 238
Score = 158 bits (399), Expect = 7e-37, Method: Composition-based stats.
Identities = 106/235 (45%), Positives = 146/235 (62%), Gaps = 3/235 (1%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR RQ +++REI ++ A+GS L++ G+T ++ TA +EEKVP ++R + GW++
Sbjct: 1 MRTD-RQNSEIREIKISPDFVPNADGSVLIECGNTKVVCTAIIEEKVPPFLRGKEMGWVS 59
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEY MLP ST R R+ G+Q GR EIQR+IGR+LR VDL ALG R I +DCDVI
Sbjct: 60 AEYSMLPGSTVIRKVRDISRGKQDGRGTEIQRLIGRSLREAVDLKALGERTIWLDCDVIN 119
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRT +I G+++AL + NK +K V +IS G + G +VDLDY
Sbjct: 120 ADGGTRTTSINGSYIALEMAVNK--ALKNKKLEVNPIKCKVGSISVGKVKGIKLVDLDYK 177
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
EDS DVD N VM D I+E+QG++ER TF+ + L A+ I D+ K +
Sbjct: 178 EDSNADVDLNLVMNDKFEIIEIQGTSERDTFTTEELAEFLKFAQIGIKDIFKYME 232
>gi|188991049|ref|YP_001903059.1| polynucleotide phosphorylase/polyadenylase [Xanthomonas campestris
pv. campestris str. B100]
gi|167732809|emb|CAP51003.1| polyribonucleotide nucleotidyltransferase [Xanthomonas campestris
pv. campestris]
Length = 735
Score = 158 bits (399), Expect = 7e-37, Method: Composition-based stats.
Identities = 42/242 (17%), Positives = 85/242 (35%), Gaps = 18/242 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
+R+ GR + +R IS+ V GS L G+T + TL + +V +
Sbjct: 346 VRIDGRALDTVRPISVQAGVLPRTHGSALFTRGETQAIVVTTLGTARDGQVIDAVAGEYK 405
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P S G + A R+ G + R + +V+ I +
Sbjct: 406 ENFLFHYNFPPYSVGECGRFGAPKRREIGHGRL----AKRGVLAVMPSLEEFPYTIRVVS 461
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
++ +++G + A++ G+ +AL D ++ + V + +
Sbjct: 462 EITESNGSSSMASVCGSSLALMDAGVPVKAPVAGIAMGLVKEDDRFVVLSD--------- 512
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T G + +Q + +++ L AK ++
Sbjct: 513 ILGDEDHLGDMDFKVAGTAEG-VSALQMDIKIEGITEEIMKQALQQAKAGRLHILGEMSK 571
Query: 237 VI 238
+
Sbjct: 572 AL 573
Score = 97.6 bits (241), Expect = 1e-18, Method: Composition-based stats.
Identities = 46/228 (20%), Positives = 78/228 (34%), Gaps = 27/228 (11%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTKHGWITAEYGMLPR 68
++L V++ A G+ +VK DT LL TA T E + + G +P
Sbjct: 46 VTLETGEVARQASGAVIVKMDDTVLLVTAVAAKTAREGQDFFPLTVDYQEKFYAGGRIPG 105
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
R GR + I R+I R +R + QII + D A
Sbjct: 106 GFFKR------EGRATEKETLISRLIDRPIRPLFPEDYKNEVQIIATVMSMNPDIDGDIA 159
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+ GA AL G + A G G I++ E ++
Sbjct: 160 ALIGASAALSLAGT-------------PFNGPIGAAKVGYKNGEYILNPTITELKDSQLE 206
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
T + ++ V+ +E A S++ + + +I + +
Sbjct: 207 LVVAGTAN-AVLMVE--SEAALLSEEVMLGAVTFGHREMQKVINIINE 251
>gi|163745458|ref|ZP_02152818.1| polyribonucleotide nucleotidyltransferase [Oceanibulbus indolifex
HEL-45]
gi|161382276|gb|EDQ06685.1| polyribonucleotide nucleotidyltransferase [Oceanibulbus indolifex
HEL-45]
Length = 711
Score = 158 bits (399), Expect = 7e-37, Method: Composition-based stats.
Identities = 45/242 (18%), Positives = 93/242 (38%), Gaps = 17/242 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR+ +++R+I + GS L G+T L TL +E+ +
Sbjct: 318 RIDGRRTDEIRDIVAETGILPRTHGSALFTRGETQGLVVTTLGTGDDEQFIDALHGNFKS 377
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + R+ G + RAL++V+ + I + +
Sbjct: 378 NFLLHYNFPPYSVGEVGRVGPPGRREVGHGKL----AWRALQAVLPAATDFPYTIRLVSE 433
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ G +++ D ++ + +L+ + + D+
Sbjct: 434 ITESNGSSSMASVCGGSLSMMDAGVPLKSAVAGVAMGLILEDDGS--------YAILSDI 485
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T++G I +Q + A + + L AKD ++
Sbjct: 486 LGDEDHLGDMDFKVAGTEAG-ITSLQMDIKVAGITPEIMEKALAQAKDGRIHILGEMNKA 544
Query: 238 IS 239
+S
Sbjct: 545 LS 546
Score = 106 bits (265), Expect = 2e-21, Method: Composition-based stats.
Identities = 31/228 (13%), Positives = 63/228 (27%), Gaps = 25/228 (10%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGN 72
++L V++ A+GS + G+T ++ T + E
Sbjct: 16 LTLETGKVARQADGSVIATLGETSVMANVTYARQQKPGQDFFPLTVHYQEKYYAAGKVP- 74
Query: 73 RVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITG 132
R + R+I R +R + ++ A+
Sbjct: 75 -GGFFKREARPTEKETLTARLIDRPIRPLFVPGFKNEVLVMCTVLSHDLVNDPDMVAMIA 133
Query: 133 AWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDST------ID 186
A A +G +A G G I++ +
Sbjct: 134 ASAA-------------LTISGAPFRGPIAGCRVGYEGGDYILNPTIDDMQDLRLNPEQR 180
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
+D T ++ V+ A S++ + A ++I +I L
Sbjct: 181 LDLVVAGTKD-AVMMVESEAYE--LSEEEMLGAVKFAHEQIQPVIDLI 225
>gi|83855213|ref|ZP_00948743.1| polyribonucleotide nucleotidyltransferase [Sulfitobacter sp.
NAS-14.1]
gi|83843056|gb|EAP82223.1| polyribonucleotide nucleotidyltransferase [Sulfitobacter sp.
NAS-14.1]
Length = 711
Score = 158 bits (399), Expect = 7e-37, Method: Composition-based stats.
Identities = 46/242 (19%), Positives = 92/242 (38%), Gaps = 17/242 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR+ +++R+I + GS L G+T L TL +E+ +
Sbjct: 318 RIDGRKTDEIRDIVAETGILPRTHGSSLFTRGETQGLVVTTLGTGDDEQFIDALHGNFKS 377
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + R+ G + RAL++V+ S I + +
Sbjct: 378 NFMLHYNFPPYSVGEVGRVGGPGRREIGHGKL----AWRALQAVLPASTDFPYTIRVVSE 433
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ G +++ D ++ + +L+ + + D+
Sbjct: 434 ITESNGSSSMASVCGGSLSMMDAGVPLKAPVAGVAMGLILEEDGS--------YAILSDI 485
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T++G I +Q + A + + L AK ++
Sbjct: 486 LGDEDHLGDMDFKVAGTEAG-ITSLQMDIKIAGITPEIMEKALAQAKAGRVHILGEMNKA 544
Query: 238 IS 239
IS
Sbjct: 545 IS 546
Score = 107 bits (266), Expect = 2e-21, Method: Composition-based stats.
Identities = 30/228 (13%), Positives = 63/228 (27%), Gaps = 25/228 (10%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGN 72
++L V++ A+GS + G+T ++ T + E
Sbjct: 16 LTLETGKVARQADGSVIATLGETSVMANVTFARQQKPGQDFFPLTVHYQEKYYAAGKVP- 74
Query: 73 RVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITG 132
R + R+I R +R + ++ A+
Sbjct: 75 -GGFFKREARPTEKETLTARLIDRPIRPLFVPGFKNEVLVMCTVLSHDLVNDPDMVAMIA 133
Query: 133 AWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGED------STID 186
A A +G + A G G +++ +
Sbjct: 134 ASAA-------------LTISGAPFRGPIGACRVGFEDGDYVLNPTVDDMQDLRLNPDQR 180
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
+D T ++ V+ A S++ + A ++I +I L
Sbjct: 181 LDLVVAGTKE-AVMMVESEAYE--LSEEEMLGAVKFAHEQIQPVIDLI 225
>gi|225075235|ref|ZP_03718434.1| hypothetical protein NEIFLAOT_00235 [Neisseria flavescens
NRL30031/H210]
gi|224953410|gb|EEG34619.1| hypothetical protein NEIFLAOT_00235 [Neisseria flavescens
NRL30031/H210]
Length = 707
Score = 158 bits (399), Expect = 7e-37, Method: Composition-based stats.
Identities = 46/242 (19%), Positives = 93/242 (38%), Gaps = 18/242 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +R +++ V GS L G+T L ATL +E++ +
Sbjct: 317 RIDGRDTRTVRPLNIQTGVLPRTHGSALFTRGETQALAVATLGTSRDEQIIDALSGEYTD 376
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P STG + A R+ G + RAL +V+ S + + +
Sbjct: 377 RFMLHYNFPPYSTGEVGRVGAPKRREIGHGRL----AKRALLAVLPKPEDFSYTMRVVSE 432
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ G ++L ++ + +L+G+ A+ +
Sbjct: 433 ITESNGSSSMASVCGGCLSLLSAGVPLKAHVAGIAMGLILEGNKFAVLTD---------I 483
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T G + +Q + +++ L AK+ ++ K
Sbjct: 484 LGDEDHLGDMDFKVAGTTEG-VTALQMDIKIQGITKEIMQIALAQAKEARLHILDQMKAA 542
Query: 238 IS 239
++
Sbjct: 543 VA 544
Score = 88.7 bits (218), Expect = 6e-16, Method: Composition-based stats.
Identities = 37/228 (16%), Positives = 76/228 (33%), Gaps = 27/228 (11%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGMLPR 68
++L +++ A + V GDT +L T ++E + + T G +P
Sbjct: 17 VTLETGEIARQAAAAVKVSMGDTVVLVAVTTNKEVKEGQDFFPLTVDYLERTYAAGKIPG 76
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
R G+Q + R+I R +R + QI+ + + +
Sbjct: 77 GFFKR------EGKQSEKEILTSRLIDRPIRPLFPEGFYHDIQIVAMVVSVDPEIDSDIP 130
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+ GA A G + A G + G +++ E + +D
Sbjct: 131 AMLGASAA-------------LVLSGVPFAGPIGAARVGYVNGVYVLNPTKAELAKSQLD 177
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
T ++ V+ A+ S++ + D++ I +
Sbjct: 178 LVVAGTSK-AVLMVESEADI--LSEEVMLGAVVYGHDQMQVAINAINE 222
>gi|317050733|ref|YP_004111849.1| ribonuclease PH [Desulfurispirillum indicum S5]
gi|316945817|gb|ADU65293.1| ribonuclease PH [Desulfurispirillum indicum S5]
Length = 244
Score = 158 bits (398), Expect = 7e-37, Method: Composition-based stats.
Identities = 106/237 (44%), Positives = 150/237 (63%), Gaps = 2/237 (0%)
Query: 6 RQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGM 65
R +++R I++TR +KYAEGS L+ G+T +L AT+++ VP ++ GW+TAEY M
Sbjct: 5 RAPHELRPITITRNYTKYAEGSVLIAMGETIVLCNATVQKTVPRFLIGKDSGWVTAEYSM 64
Query: 66 LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125
LPR+T R +RE+ GR GR+ EIQR+IGR+LRS++DL A+ I IDCDV+QADGGT
Sbjct: 65 LPRATDVRNRRESQQGRPSGRTMEIQRLIGRSLRSIIDLHAMSGYTITIDCDVLQADGGT 124
Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185
R A++ GA++AL D + M + L+ VAAIS G+ +P+ DLDY EDS
Sbjct: 125 RCASVNGAFIALADAVDSMLAAGMIGES--PLRSTVAAISVGIFNNWPLADLDYLEDSQA 182
Query: 186 DVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNEV 242
VD N V T G VE+QG+ E FS+ +L LA D I + LQ + +S ++
Sbjct: 183 MVDMNVVATGKGEFVEIQGTGESRPFSRKDHDILLELALDGIGQISALQFEQLSAQI 239
>gi|316983743|gb|EFV62724.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
H44/76]
gi|325200556|gb|ADY96011.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
H44/76]
Length = 706
Score = 158 bits (398), Expect = 7e-37, Method: Composition-based stats.
Identities = 46/242 (19%), Positives = 93/242 (38%), Gaps = 18/242 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +R +++ V GS L G+T L ATL +E++ +
Sbjct: 316 RIDGRDTRTVRPLNIQTGVLPRTHGSALFTRGETQALAVATLGTSRDEQIIDALSGEYTD 375
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P STG + A R+ G + RAL +V+ S + + +
Sbjct: 376 RFMLHYNFPPYSTGEVGRVGAPKRREIGHGRL----AKRALLAVLPKPEDFSYTMRVVSE 431
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ G ++L ++ + +L+G+ A+ +
Sbjct: 432 ITESNGSSSMASVCGGCLSLLSAGVPLKAHVAGIAMGLILEGNKFAVLTD---------I 482
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T G + +Q + +++ L AK+ ++ K
Sbjct: 483 LGDEDHLGDMDFKVAGTTEG-VTALQMDIKIQGITKEIMQIALAQAKEARLHILDQMKAA 541
Query: 238 IS 239
++
Sbjct: 542 VA 543
Score = 89.1 bits (219), Expect = 5e-16, Method: Composition-based stats.
Identities = 37/228 (16%), Positives = 75/228 (32%), Gaps = 27/228 (11%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGMLPR 68
++L +++ A + V GDT +L T ++E + + T G +P
Sbjct: 16 VTLETGEIARQAAAAVKVSMGDTVVLVAVTTNKEVKEGQDFFPLTVDYLERTYAAGKIPG 75
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
R G+Q + R+I R +R + QI+ + + +
Sbjct: 76 GFFKR------EGKQSEKEILTSRLIDRPIRPLFPEGFYHDIQIVAMVVSVDPEIDSDIP 129
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+ GA A G + A G + G +++ E + +D
Sbjct: 130 AMLGASAA-------------LVLSGVPFAGPIGAARVGYVNGVYVLNPTKAELAKSQLD 176
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
T ++ V+ A+ +D + D++ I +
Sbjct: 177 LVVAGTSK-AVLMVESEAKI--LPEDVMLGAVVYGHDQMQVAINAINE 221
>gi|297180703|gb|ADI16912.1| polyribonucleotide nucleotidyltransferase (polynucleotide
phosphorylase) [uncultured gamma proteobacterium
HF0010_16J05]
Length = 718
Score = 158 bits (398), Expect = 7e-37, Method: Composition-based stats.
Identities = 46/242 (19%), Positives = 88/242 (36%), Gaps = 18/242 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +R I + V A GS L G+T L ATL + + + +
Sbjct: 332 RIDGRDLRTVRPIEVEVGVLPKAHGSALFTRGETQALVVATLGTLRDAALIDALEGSYKD 391
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G R+ G + R + + + S + + +
Sbjct: 392 TFMLHYNFPPYSVGEAGFMSGPKRREIGHGKL----ARRGVSATLPNSEDFPYTVRVVSE 447
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ G +AL D ++ + V +G+ A+ +
Sbjct: 448 ITESNGSSSMASVCGTSLALMDAGVPVKAPVAGVAMGLVKEGNRYAVLTD---------I 498
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T +G + +Q + +++ A L A + ++ V
Sbjct: 499 LGDEDHLGDMDFKVAGTATG-VTALQMDIKIDGITEEIMEAALAQAFEARVHILGEMNKV 557
Query: 238 IS 239
IS
Sbjct: 558 IS 559
Score = 117 bits (292), Expect = 2e-24, Method: Composition-based stats.
Identities = 42/234 (17%), Positives = 80/234 (34%), Gaps = 28/234 (11%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----HGWITAEYGMLPR 68
+++ ++K A GS +V GDT +LTT + + T G +P
Sbjct: 32 VTIETNKIAKQATGSVVVTIGDTVVLTTVVGAKSARPGQDFFPLTVNYQEKTYAAGKIPG 91
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
R GR + R+I R +R + + QI+ + A
Sbjct: 92 GFFRR------EGRPSEKETLTSRLIDRPIRPLFPKGFMNEVQIVCTVVSTDKNQDPDIA 145
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+ G A G + A G + G +++ Y T +++
Sbjct: 146 AMIGTSAA-------------LAISGIPFDGPIGAARVGYVDGQYLLNPGYDVLETSELN 192
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNEV 242
T S ++ V+ A+ S+D + A + +I + ++ E+
Sbjct: 193 MTVAGTAS-AVLMVESEAKE--LSEDQMLGAVLFAHQEMQAIITAVAE-LAGEI 242
>gi|154500957|ref|ZP_02038995.1| hypothetical protein BACCAP_04643 [Bacteroides capillosus ATCC
29799]
gi|150269981|gb|EDM97500.1| hypothetical protein BACCAP_04643 [Bacteroides capillosus ATCC
29799]
Length = 238
Score = 158 bits (398), Expect = 7e-37, Method: Composition-based stats.
Identities = 104/238 (43%), Positives = 153/238 (64%), Gaps = 3/238 (1%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R+ GR +Q+R I + ++K+AEGSCL++ G+TH+L TA++E++VP + GW+TA
Sbjct: 3 RIDGRANDQLRPIEIIPGINKFAEGSCLIRCGNTHVLCTASVEDRVPPHV-PEGEGWVTA 61
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
EY MLPR+ R KR+ + RS EIQR++GR+LR+ VD+ ALG R I +DCDV+Q
Sbjct: 62 EYSMLPRANRERSKRDIAKLKLSARSAEIQRLVGRSLRAAVDMKALGPRTITVDCDVLQG 121
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
DGGTRTA++TG +VAL L + + + LK VAAIS G++ ++DL Y E
Sbjct: 122 DGGTRTASVTGGFVALSFALHKLVEEGVLEAM--PLKTCVAAISAGIVDDQLLLDLCYEE 179
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
DS+ VD N VMT G +VE+QG+ E +F+ + A++ L I D+ +QK V+
Sbjct: 180 DSSAQVDLNCVMTGEGELVELQGTGEGRSFTLEEQRALVELCAKGIRDVQAVQKAVLG 237
>gi|114765823|ref|ZP_01444916.1| polyribonucleotide nucleotidyltransferase [Pelagibaca bermudensis
HTCC2601]
gi|114541822|gb|EAU44859.1| polyribonucleotide nucleotidyltransferase [Roseovarius sp.
HTCC2601]
Length = 463
Score = 158 bits (398), Expect = 7e-37, Method: Composition-based stats.
Identities = 48/243 (19%), Positives = 91/243 (37%), Gaps = 17/243 (6%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +Q+R I V GS L G+T L TL +E++ +
Sbjct: 68 RIDGRALDQVRPIQSETSVLPRTHGSSLFTRGETQALVVTTLGTGDDEQIIDALHGNFRS 127
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + + R+ G + RAL++V+ I + +
Sbjct: 128 NFLLHYNFPPYSVGEVGRVGSPGRREIGHGKL----AWRALQAVLPAPTDFPYTIRLVSE 183
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ G +++ D ++ + VL+ + D+
Sbjct: 184 ITESNGSSSMASVCGGSLSMMDAGVPLKAPVAGVAMGLVLEDD--------GEYAILTDI 235
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T++G I +Q + A + + L AKD ++
Sbjct: 236 LGDEDHLGDMDFKVAGTENG-ITSLQMDIKVAGITPEIMKKALAQAKDGRMHILSEMGKA 294
Query: 238 ISN 240
+S
Sbjct: 295 LSE 297
>gi|17546786|ref|NP_520188.1| polynucleotide phosphorylase/polyadenylase [Ralstonia solanacearum
GMI1000]
gi|81504298|sp|Q8XXP6|PNP_RALSO RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|17429086|emb|CAD15774.1| probable polyribonucleotide nucleotidyltransferase protein
[Ralstonia solanacearum GMI1000]
Length = 717
Score = 158 bits (398), Expect = 7e-37, Method: Composition-based stats.
Identities = 50/242 (20%), Positives = 96/242 (39%), Gaps = 18/242 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +R I + V A GS L G+T L ATL +E++ ++
Sbjct: 315 RIDGRDTRTVRPIEIRSSVLPRAHGSALFTRGETQALVVATLGTKSDEQIIDALQGEYRD 374
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y M P +TG + + R+ G + RAL V+ + I + +
Sbjct: 375 RFMLHYNMPPFATGETGRVGSPKRREIGHGRL----AKRALIPVLPKEDEFAYTIRLVSE 430
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ G +AL D ++ + +L+G+ A+ +
Sbjct: 431 ITESNGSSSMASVCGGCLALMDAGVPVKAHVAGVAMGLILEGNKFAVLTD---------I 481
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D TD+G I +Q + +++ L AK+ ++ +
Sbjct: 482 LGDEDHLGDMDFKVAGTDNG-ITALQMDIKVQGITKEIMQVALAQAKEGRLHILGKMQAA 540
Query: 238 IS 239
+
Sbjct: 541 MG 542
Score = 93.0 bits (229), Expect = 3e-17, Method: Composition-based stats.
Identities = 39/233 (16%), Positives = 75/233 (32%), Gaps = 31/233 (13%)
Query: 13 EISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT----KHGWITAEYGMLP 67
++ + +++ A G+ L+ DT +L T + + T G +P
Sbjct: 15 KVRMETGEIARQASGAVLLDMDDTVVLATVVGAKNAKPGQDFFPLTVDYIEKTYAAGKIP 74
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R GR R+I R LR + Q++I I +
Sbjct: 75 GGFFKR------EGRPSENETLTSRLIDRPLRPLFPEGFYNEVQVVIHVLSINPEVPADI 128
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
A+ A AL G V A G G +++ + + + D+
Sbjct: 129 PALVAASAALAVSG-------------LPFNGPVGAARVGYKDGQYLLNPNRAQLAHSDL 175
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKD----RIADLIKLQKD 236
D T+ ++ V+ A + S++ + + I + L +D
Sbjct: 176 DLVVAGTER-AVLMVESEANQ--LSEEVMLGAVVYGHEQMQIAINAIHDLVRD 225
>gi|282855612|ref|ZP_06264926.1| polyribonucleotide nucleotidyltransferase [Pyramidobacter piscolens
W5455]
gi|282586542|gb|EFB91796.1| polyribonucleotide nucleotidyltransferase [Pyramidobacter piscolens
W5455]
Length = 751
Score = 158 bits (398), Expect = 7e-37, Method: Composition-based stats.
Identities = 43/246 (17%), Positives = 85/246 (34%), Gaps = 20/246 (8%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL-----EEKVPMWIR-NT 54
+R GR +++R IS V GS L G+T L TL ++++ ++ +
Sbjct: 311 IRADGRATDEIRPISCEVNVLPKVHGSALFTRGETQALVVTTLGMLGEDDQIIDGLKLDE 370
Query: 55 KHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIII 114
+ Y P S G R+ G RAL +V + +
Sbjct: 371 PNKRFLLHYNFPPYSVGEIKPMRGPGRREIGHGAL----AERALAPLVPGEEEFPYVVRV 426
Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPI 174
D+++++G + A+I G +++ M+ + + +G I
Sbjct: 427 VSDILESNGSSSQASICGGSLSMMAAGVPMKKHVAGIAMGLIKEGDDMVILTD------- 479
Query: 175 VDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
+ ED D+D T G + +Q + +++ L A ++
Sbjct: 480 --IQGLEDHYGDMDFKVAGTRDG-VTALQMDNKAGGITREILSRALMQAHQARMQILDAM 536
Query: 235 KDVISN 240
+ I
Sbjct: 537 ETCIPE 542
Score = 87.6 bits (215), Expect = 1e-15, Method: Composition-based stats.
Identities = 42/233 (18%), Positives = 78/233 (33%), Gaps = 27/233 (11%)
Query: 13 EISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT----KHGWITAEYGMLP 67
++ V+K A + + G+T +LTTA + +K + + G +P
Sbjct: 13 DLVFKTGKVAKQANAAVVASHGETTILTTACMSDKPRVGLDFFPLLVDFEERYYAAGKIP 72
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R GR + R++ R++RS+ D S ++ +
Sbjct: 73 GGYIKR------EGRPSQTAILSARVVDRSIRSLFDDSMRNDVHVVATVLAVDQKNPANI 126
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
AI A +A G V A+ G + G +V+ + +
Sbjct: 127 LAINAASMA-------------LTISDIPWSGPVGAVRMGCIDGELVVNPTEDRMAESTL 173
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
D +G I V+ A ++ L A+D I ++ Q V +
Sbjct: 174 DLTVAG-HAGGITMVEAGAREVP--EELLVNALQTAQDEIKKIVAFQLQVRAE 223
>gi|163867506|ref|YP_001608705.1| polynucleotide phosphorylase/polyadenylase [Bartonella tribocorum
CIP 105476]
gi|189037300|sp|A9IMR9|PNP_BART1 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|161017152|emb|CAK00710.1| polyribonucleotide nucleotidyltransferase [Bartonella tribocorum
CIP 105476]
Length = 731
Score = 158 bits (398), Expect = 7e-37, Method: Composition-based stats.
Identities = 43/243 (17%), Positives = 86/243 (35%), Gaps = 18/243 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR + +R I + GS L G+T + ATL +E+ +
Sbjct: 317 RIDGRNLSTVRPIQSEVSILPRTHGSALFTRGETQAIVVATLGTGEDEQYIDALTGMYKE 376
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + + R+ G + RA+ ++ I +
Sbjct: 377 TFLLHYNFPPFSVGETGRLGSPGRREIGHGKL----AWRAIHPMLPTKESFPYTIRAVSE 432
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A + G +AL D + + + +G A+ +
Sbjct: 433 ITESNGSSSMATVCGTSLALMDAGVPLARPVAGIAMGLIKEGERFAVLSD---------I 483
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T++G I +Q + +++ L AKD ++
Sbjct: 484 LGDEDHLGDMDFKVAGTENG-ITALQMDIKIDGITEEIMKIALEQAKDGRIHILNEMAKA 542
Query: 238 ISN 240
+++
Sbjct: 543 LTS 545
Score = 109 bits (271), Expect = 5e-22, Method: Composition-based stats.
Identities = 31/228 (13%), Positives = 70/228 (30%), Gaps = 27/228 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----HGWITAEYGML 66
R ++L +++ A+G+ + +G+T +L T + + + G +
Sbjct: 14 RPLTLETGKIARQADGAVIATYGETIVLATVVSAKSPKPDQDFFPLTVNYQEKSYAVGRI 73
Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
P R R + R+I R +R + Q+I+ +
Sbjct: 74 PGGYLKR------ESRPSENETLVSRLIDRPIRPLFVEGYKNDTQVIVSVIQHDLENNPD 127
Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
A+ + A G +A G G +++ E
Sbjct: 128 ILAMIASSAA-------------LTLSGVPFMGPIAGARVGYCNGQYVLNPHMDEMPESK 174
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
+D T+S ++ V+ A+ +D + + ++
Sbjct: 175 LDLVVAGTES-AVLMVESEAQE--LPEDIMLGAVMFGHKGLQPVLDAI 219
>gi|312876944|ref|ZP_07736919.1| polyribonucleotide nucleotidyltransferase [Caldicellulosiruptor
lactoaceticus 6A]
gi|311796259|gb|EFR12613.1| polyribonucleotide nucleotidyltransferase [Caldicellulosiruptor
lactoaceticus 6A]
Length = 701
Score = 158 bits (398), Expect = 8e-37, Method: Composition-based stats.
Identities = 51/241 (21%), Positives = 89/241 (36%), Gaps = 17/241 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHG 57
R GR+ +++R + + GS L K G T +LT AT E + + +
Sbjct: 313 RPDGRKFDEIRPLYAEVGILPRTHGSALFKRGYTQVLTVATLGTKGEMQFLDGLEEEEAK 372
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P STG R+ G RAL V+ I + +
Sbjct: 373 RYMHHYNFPPFSTGESKPVRGPGRREIGHGAL----AERALEPVIPSEDEFPYTIRLVSE 428
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
V+ ++G T A++ G+ +AL D ++ + + K + I + D+
Sbjct: 429 VLTSNGSTSQASVCGSTLALMDAGVPIKAPVAGISIGLITKDDGSFI--------LLTDI 480
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T G I +Q + +++ L A++ ++ K V
Sbjct: 481 QGIEDFFGDMDFKVAGTREG-ITAIQLDIKIHGLTKEIIEKALYQAREARLKILDFMKTV 539
Query: 238 I 238
I
Sbjct: 540 I 540
Score = 105 bits (262), Expect = 5e-21, Method: Composition-based stats.
Identities = 37/234 (15%), Positives = 79/234 (33%), Gaps = 27/234 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVP----MWIRNTKHGWITAEYGML 66
RE+S + A G+ L ++GDT +L TA EK + + G +
Sbjct: 13 RELSFEIGKYALLANGAVLARYGDTAVLVTACASEKPREGINFFPLTVDYEERLYSVGKI 72
Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
P R G+ ++ R+I R +R + +I + D
Sbjct: 73 PGGFIKR------EGKPSEKAILSARLIDRPIRPLFPKDFYHDVSVIATVLSVDPDNPPD 126
Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
A+ G+ VA +G ++ G + G +++ E
Sbjct: 127 VLAMLGSSVA-------------LSISDIPFEGPTGSVLVGYVDGKIVINPTAKEREVSK 173
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
+ T ++ ++ A+ +D + A++ I +++ + ++
Sbjct: 174 LHLVVSGTKD-RVMMIEAGAKEVP--EDIMLEAIMTAQEEIKKIVEFIEGIVRE 224
>gi|296840915|ref|ZP_06863772.2| polyribonucleotide nucleotidyltransferase [Neisseria polysaccharea
ATCC 43768]
gi|296839560|gb|EFH23498.1| polyribonucleotide nucleotidyltransferase [Neisseria polysaccharea
ATCC 43768]
Length = 707
Score = 158 bits (398), Expect = 8e-37, Method: Composition-based stats.
Identities = 46/242 (19%), Positives = 93/242 (38%), Gaps = 18/242 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +R +++ V GS L G+T L ATL +E++ +
Sbjct: 317 RIDGRDTRTVRPLNIQTGVLPRTHGSALFTRGETQALAVATLGTSRDEQIIDALSGEYTD 376
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P STG + A R+ G + RAL +V+ S + + +
Sbjct: 377 RFMLHYNFPPYSTGEVGRVGAPKRREIGHGRL----AKRALLAVLPKPEDFSYTMRVVSE 432
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ G ++L ++ + +L+G+ A+ +
Sbjct: 433 ITESNGSSSMASVCGGCLSLLSAGVPLKAHVAGIAMGLILEGNKFAVLTD---------I 483
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T G + +Q + +++ L AK+ ++ K
Sbjct: 484 LGDEDHLGDMDFKVAGTTEG-VTALQMDIKIQGITKEIMQIALAQAKEARLHILDQMKAA 542
Query: 238 IS 239
++
Sbjct: 543 VA 544
Score = 88.7 bits (218), Expect = 6e-16, Method: Composition-based stats.
Identities = 37/228 (16%), Positives = 76/228 (33%), Gaps = 27/228 (11%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGMLPR 68
++L +++ A + V GDT +L T ++E + + T G +P
Sbjct: 17 VTLETGEIARQAAAAVKVSMGDTVVLVAVTTNKEVKEGQDFFPLTVDYLERTYAAGKIPG 76
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
R G+Q + R+I R +R + QI+ + + +
Sbjct: 77 GFFKR------EGKQSEKEILTSRLIDRPIRPLFPEGFYHDIQIVAMVVSVDPEIDSDIP 130
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+ GA A G + A G + G +++ E + +D
Sbjct: 131 AMLGASAA-------------LVLSGVPFAGPIGAARVGYVNGVYVLNPTKAELAKSQLD 177
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
T ++ V+ A+ S++ + D++ I +
Sbjct: 178 LVVAGTSK-AVLMVESEADI--LSEEVMLGAVVYGHDQMQVAINAINE 222
>gi|328676680|gb|AEB27550.1| Polyribonucleotide nucleotidyltransferase [Francisella cf. novicida
Fx1]
Length = 693
Score = 158 bits (398), Expect = 8e-37, Method: Composition-based stats.
Identities = 41/244 (16%), Positives = 85/244 (34%), Gaps = 17/244 (6%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +R I++ V GS L G+T L TL + ++ + +
Sbjct: 317 RIDGRCTETIRPINVKIGVLPGVHGSALFTRGETQALVVTTLGSDRDAQLVESLDGIEKC 376
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G R R + RA ++V + + +
Sbjct: 377 RYMLHYNFPPYSVGECGMVGMAPKR---REIGHANLAKRATQAVFPNEEAYPYVVRVVSE 433
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+++++G + A + G+ +++ D + + + + G A+ +
Sbjct: 434 ILESNGSSSMATVCGSSLSMMDAGVPIAEPVAGIAMGLIKDGTKYAVLSD---------I 484
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T G + +Q + S++ L A+ ++ + +V
Sbjct: 485 LGDEDHLGDMDFKVAGTRYG-VTALQMDIKIKGISREILEQALEQARVGRLHILGIMNEV 543
Query: 238 ISNE 241
I
Sbjct: 544 IKEH 547
Score = 80.3 bits (196), Expect = 2e-13, Method: Composition-based stats.
Identities = 36/228 (15%), Positives = 69/228 (30%), Gaps = 27/228 (11%)
Query: 13 EISLTRR-VSKYAEGSCLVKFG----DTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLP 67
EI L +++ A+GS V G + ++ + + + + T G +P
Sbjct: 14 EIILETGGMARQADGSVTVSCGNNVVLVTTVVKKSVADGTDFFPLSVHYLEKTYAAGKIP 73
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R GR I R+I R++R QI+
Sbjct: 74 GGFLRR------EGRPSEEQILISRLIDRSIRPSFPDGFFNEIQIVATVLSYDGAFSPDI 127
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
A+ G ++ VA + G G I++ + + D+
Sbjct: 128 LALIG-------------ASASLAISGAPYDDVVAGVRVGYTNGKYILNPNKQDLRDSDL 174
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
D T I+ V+ +E + + + A + +I
Sbjct: 175 DLVVSGT-DDAILMVE--SEANSLPESVMLGGILYAHKHLKTIINSIN 219
>gi|260461975|ref|ZP_05810220.1| Polyribonucleotide nucleotidyltransferase [Mesorhizobium
opportunistum WSM2075]
gi|259032222|gb|EEW33488.1| Polyribonucleotide nucleotidyltransferase [Mesorhizobium
opportunistum WSM2075]
Length = 715
Score = 158 bits (398), Expect = 8e-37, Method: Composition-based stats.
Identities = 46/241 (19%), Positives = 87/241 (36%), Gaps = 18/241 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +R+I V GS L G+T L ATL +E+ +
Sbjct: 317 RIDGRDLKTVRKIVSEVGVLPRTHGSALFTRGETQALVVATLGTGEDEQYVDSLTGMYKE 376
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + + R+ G + RA+R ++ + + + +
Sbjct: 377 KFLLHYNFPPYSVGETGRMGSPGRREIGHGKL----AWRAIRPMLPSADQFPYTLRVVSE 432
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A + G +AL D + + + +G A+ +
Sbjct: 433 ITESNGSSSMATVCGTSLALMDAGVPLAKPVAGIAMGLIKEGERFAVLSD---------I 483
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T SG I +Q + +++ L+ AKD ++
Sbjct: 484 LGDEDHLGDMDFKVAGTTSG-ITSLQMDIKIEGITEEIMKIALDQAKDGRQHILGEMAHA 542
Query: 238 I 238
+
Sbjct: 543 L 543
Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats.
Identities = 33/228 (14%), Positives = 69/228 (30%), Gaps = 27/228 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----HGWITAEYGML 66
R + L +++ A+G+ L +G+T +L T ++ + + T G +
Sbjct: 14 RPLILETGKIARQADGAVLATYGETKVLATVVSMKEPKPGLDFFPLTVNYQEKTYAAGKI 73
Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
P R GR + + R+I R +R + QI++ +
Sbjct: 74 PGGYFKR------EGRPSEKETLVSRLIDRPIRPLFADGYKNDTQIVVTVVQHDLENDPD 127
Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
+I A G V G + G +++ E
Sbjct: 128 ILSIVATSAA-------------LTLSGVPFMGPVGGARVGYINGEYVLNPHIDEMQESK 174
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
+D T ++ V+ A+ ++ + +I
Sbjct: 175 LDLVVAGTAD-AVLMVESEAKE--LGEELMLGAVMFGHRGFQPVIDAI 219
>gi|208779001|ref|ZP_03246347.1| 3' exoribonuclease family, domain 2 [Francisella novicida FTG]
gi|208744801|gb|EDZ91099.1| 3' exoribonuclease family, domain 2 [Francisella novicida FTG]
Length = 693
Score = 158 bits (398), Expect = 8e-37, Method: Composition-based stats.
Identities = 41/244 (16%), Positives = 85/244 (34%), Gaps = 17/244 (6%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +R I++ V GS L G+T L TL + ++ + +
Sbjct: 317 RIDGRCTETIRPINVKIGVLPGVHGSALFTRGETQALVVTTLGSDRDAQLVESLDGIEKC 376
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G R R + RA ++V + + +
Sbjct: 377 RYMLHYNFPPYSVGECGMVGMAPKR---REIGHANLAKRATQAVFPNEEAYPYVVRVVSE 433
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+++++G + A + G+ +++ D + + + + G A+ +
Sbjct: 434 ILESNGSSSMATVCGSSLSMMDAGVPIAEPVAGIAMGLIKDGTKYAVLSD---------I 484
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T G + +Q + S++ L A+ ++ + +V
Sbjct: 485 LGDEDHLGDMDFKVAGTRYG-VTALQMDIKIKGISREILEQALEQARVGRLHILGIMNEV 543
Query: 238 ISNE 241
I
Sbjct: 544 IKEH 547
Score = 80.3 bits (196), Expect = 2e-13, Method: Composition-based stats.
Identities = 36/228 (15%), Positives = 69/228 (30%), Gaps = 27/228 (11%)
Query: 13 EISLTRR-VSKYAEGSCLVKFG----DTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLP 67
EI L +++ A+GS V G + ++ + + + + T G +P
Sbjct: 14 EIILETGGMARQADGSVTVSCGNNVVLVTTVVKKSVADGTDFFPLSVHYLEKTYAAGKIP 73
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R GR I R+I R++R QI+
Sbjct: 74 GGFLRR------EGRPSEEQILISRLIDRSIRPSFPDGFFNEIQIVATVLSYDGAFSPDI 127
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
A+ G ++ VA + G G I++ + + D+
Sbjct: 128 LALIG-------------ASASLAISGAPYDDVVAGVRVGYTNGKYILNPNKQDLRDSDL 174
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
D T I+ V+ +E + + + A + +I
Sbjct: 175 DLVVSGT-DDAILMVE--SEANSLPESVMLGGILYAHKHLKTIINSIN 219
>gi|284799739|ref|ZP_05984737.2| polyribonucleotide nucleotidyltransferase [Neisseria subflava
NJ9703]
gi|284797006|gb|EFC52353.1| polyribonucleotide nucleotidyltransferase [Neisseria subflava
NJ9703]
Length = 707
Score = 158 bits (398), Expect = 8e-37, Method: Composition-based stats.
Identities = 45/242 (18%), Positives = 91/242 (37%), Gaps = 18/242 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +R +++ V GS L G+T L ATL +E++ +
Sbjct: 317 RIDGRDTRTVRPLNIQTGVLPRTHGSALFTRGETQALAVATLGTSRDEQIIDALSGEYTD 376
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P STG + A R+ G + RAL +V+ S + + +
Sbjct: 377 RFMLHYNFPPYSTGEVGRVGAPKRREIGHGRL----AKRALLAVLPEPEDFSYTMRVVSE 432
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ G ++L ++ + +L + A+ +
Sbjct: 433 ITESNGSSSMASVCGGCLSLLSAGVPLKAHVAGIAMGLILDNNKFAVLTD---------I 483
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T G + +Q + +++ L AK+ ++ K
Sbjct: 484 LGDEDHLGDMDFKVAGTTEG-VTALQMDIKIQGITKEIMQIALAQAKEARLHILDQMKAA 542
Query: 238 IS 239
++
Sbjct: 543 VA 544
Score = 88.7 bits (218), Expect = 6e-16, Method: Composition-based stats.
Identities = 38/228 (16%), Positives = 76/228 (33%), Gaps = 27/228 (11%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGMLPR 68
++L +++ A + V GDT +L T ++E + + T G +P
Sbjct: 17 VTLETGEIARQAAAAVKVSMGDTVVLVAVTTNKEVKEGQDFFPLTVDYLERTYAAGKIPG 76
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
R G+Q + R+I R +R + QI+ + + +
Sbjct: 77 GFFKR------EGKQSEKEILTSRLIDRPIRPLFPEGFYHDIQIVAMVVSVDPEIDSDIP 130
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+ GA A G + A G + G I++ E + +D
Sbjct: 131 AMLGASAA-------------LVLSGVPFAGPIGAARVGYVNGVYILNPTKAELAKSQLD 177
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
T ++ V+ A+ S++ + D++ I +
Sbjct: 178 LVVAGTSK-AVLMVESEADI--LSEEVMLGAVVYGHDQMQVAINAINE 222
>gi|84684402|ref|ZP_01012303.1| polyribonucleotide nucleotidyltransferase [Maritimibacter
alkaliphilus HTCC2654]
gi|84667381|gb|EAQ13850.1| polyribonucleotide nucleotidyltransferase [Rhodobacterales
bacterium HTCC2654]
Length = 716
Score = 158 bits (398), Expect = 8e-37, Method: Composition-based stats.
Identities = 48/242 (19%), Positives = 94/242 (38%), Gaps = 17/242 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +Q+R I + GS L G+T L TL +E++ + T
Sbjct: 318 RIDGRALDQVRPILAEVGLLPRTHGSALFTRGETQGLVVTTLGTGDDEQMIDALTGTYKS 377
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + + R+ G + RAL++V+ + I + +
Sbjct: 378 NFLLHYNFPPYSVGEVGRVGSPGRREIGHGKL----AWRALQAVLPAATDFPYTIRVVSE 433
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ G +++ D ++ + VL+ + + D+
Sbjct: 434 ITESNGSSSMASVCGGSLSMMDAAVPLKAPVAGVAMGLVLEDDGS--------YAVLTDI 485
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T++G I +Q + A + + L AKD ++
Sbjct: 486 LGDEDHLGDMDFKVAGTENG-ITSLQMDIKVAGITPEIMEKALAQAKDGRMHILGEMNKA 544
Query: 238 IS 239
+S
Sbjct: 545 LS 546
Score = 101 bits (250), Expect = 1e-19, Method: Composition-based stats.
Identities = 27/222 (12%), Positives = 62/222 (27%), Gaps = 13/222 (5%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGN 72
++L V++ A+G+ + G+T ++ T ++ E
Sbjct: 16 LTLETGKVARQADGTVIATLGETSVMANVTFAKQQKEGQDFFPLTVHYQEKYYAAGKVP- 74
Query: 73 RVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITG 132
R + R+I R +R + ++ A+
Sbjct: 75 -GGFFKREARPTEKETLTARLIDRPIRPLFVEGFKNEVLVMCTVLSHDLVNDPDIVAMIA 133
Query: 133 AWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFV 192
A AL ++ +V +C + + +D
Sbjct: 134 ASAALTISGAPFMGPIAGARVGYEDGEYVLNPTCDDMHDL-------RNNPDQRLDLVVA 186
Query: 193 MTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
T ++ V+ A ++ + A ++I +I L
Sbjct: 187 GTKD-AVMMVESEAYE--LTEAEMLGAVTFAHEQIQPVIDLI 225
>gi|262039265|ref|ZP_06012583.1| polyribonucleotide nucleotidyltransferase [Leptotrichia
goodfellowii F0264]
gi|261746759|gb|EEY34280.1| polyribonucleotide nucleotidyltransferase [Leptotrichia
goodfellowii F0264]
Length = 711
Score = 158 bits (398), Expect = 8e-37, Method: Composition-based stats.
Identities = 47/243 (19%), Positives = 86/243 (35%), Gaps = 18/243 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R GR ++R + + GS L G+T L T TL +E++ I +
Sbjct: 321 RADGRTTTEIRPLDVEVDTLPVPHGSALFTRGETQALVTVTLGSKADEQIVDGIEDESRK 380
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G A R+ G RAL+ V+ + + +
Sbjct: 381 KFFLHYNFPPYSVGEAGFLRAPGRRELGHGNL----AERALKYVMPDQETFPYTVRLVSE 436
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A+I G +AL ++ + + +G + +
Sbjct: 437 ITESNGSSSQASICGGSLALMAAGVPIKSTVAGIAMGLIKEGDTFTVLTD---------I 487
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T G I +Q + +++ L A + +I ++V
Sbjct: 488 QGLEDHLGDMDFKVAGTKKG-ITAIQMDIKIEGITREIMDIALKQALEGRYFIIDKMEEV 546
Query: 238 ISN 240
IS
Sbjct: 547 ISE 549
Score = 104 bits (260), Expect = 7e-21, Method: Composition-based stats.
Identities = 40/228 (17%), Positives = 73/228 (32%), Gaps = 19/228 (8%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGN 72
+ L+ +++ A GS +V+ G T LL TAT + V E
Sbjct: 16 VKLSTGKIARQAGGSVMVQCGGTVLLVTATRSKDVKEGQDFFPLTVDYIEKFYASGKFP- 74
Query: 73 RVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITG 132
R I R++ R +R + L S I+I A G
Sbjct: 75 -GGFVKRESRPSTDEILISRLVDRPIRPLFPEGFLNSVHIVITVVSYDEINQPENLATIG 133
Query: 133 AWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFV 192
VA G VA ++ G + G +++ + ++ +
Sbjct: 134 VSVA-------------LGLSDIPFAGTVAGVTVGYVDGEYVLNPTAEQLEKSEIHLSVA 180
Query: 193 MTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
T + V+ A+ S++ + +RI ++ Q +S
Sbjct: 181 GTKD-AVTMVEAGAKE--VSEEVMLEAIMFGHERIKEICAEQDKFLSQ 225
>gi|260425775|ref|ZP_05779755.1| polyribonucleotide nucleotidyltransferase [Citreicella sp. SE45]
gi|260423715|gb|EEX16965.1| polyribonucleotide nucleotidyltransferase [Citreicella sp. SE45]
Length = 716
Score = 158 bits (398), Expect = 8e-37, Method: Composition-based stats.
Identities = 46/243 (18%), Positives = 90/243 (37%), Gaps = 17/243 (6%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +Q+R I V GS L G+T L TL +E++ +
Sbjct: 318 RIDGRALDQVRPIVSETSVLPRTHGSSLFTRGETQALVVTTLGTGDDEQIIDALHGNFRS 377
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + + R+ G + RAL++V+ I + +
Sbjct: 378 NFLLHYNFPPYSVGEVGRVGSPGRREIGHGKL----AWRALQAVLPAPTDFPYTIRVVSE 433
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ G +++ D ++ + VL+ + D+
Sbjct: 434 ITESNGSSSMASVCGGSLSMMDAGVPLKAPVAGVAMGLVLE--------DGGEYAVLTDI 485
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T++G I +Q + A + + L AK ++
Sbjct: 486 LGDEDHLGDMDFKVAGTENG-ITSLQMDIKVAGITPEIMKQALAQAKAGRLHILAEMAKA 544
Query: 238 ISN 240
++
Sbjct: 545 LTE 547
Score = 105 bits (261), Expect = 6e-21, Method: Composition-based stats.
Identities = 30/228 (13%), Positives = 63/228 (27%), Gaps = 25/228 (10%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGN 72
++L V++ A+GS + G+T ++ T ++ E
Sbjct: 16 LTLETGKVARQADGSVIATLGETSVMANVTFAKEPKPGQDFFPLTVHYQEKYYAAGKVP- 74
Query: 73 RVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITG 132
R + R+I R +R + ++ A+
Sbjct: 75 -GGFFKREARPTEKETLTARLIDRPIRPLFVPGFKHEVLVMCTVLSHDLVNDPDIVAMIA 133
Query: 133 AWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGED------STID 186
A A G +A G G +++ +
Sbjct: 134 ASAA-------------LTISGVPFMGPIAGARVGFEDGEYVLNPTVDDMQGLRNNPEQR 180
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
+D T ++ V+ A ++D + A ++I +I L
Sbjct: 181 LDLVVAGTKD-AVMMVESEAYE--LTEDEMLGAVTFAHEQIQPVIDLI 225
>gi|298368480|ref|ZP_06979798.1| polyribonucleotide nucleotidyltransferase [Neisseria sp. oral taxon
014 str. F0314]
gi|298282483|gb|EFI23970.1| polyribonucleotide nucleotidyltransferase [Neisseria sp. oral taxon
014 str. F0314]
Length = 705
Score = 158 bits (398), Expect = 8e-37, Method: Composition-based stats.
Identities = 46/242 (19%), Positives = 92/242 (38%), Gaps = 18/242 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +R +++ V GS L G+T L ATL +E++ +
Sbjct: 316 RIDGRDTRTVRPLNIQTGVLPRTHGSALFTRGETQALAVATLGTSRDEQIIDALSGEYTD 375
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P STG + A R+ G + RAL +V+ S + + +
Sbjct: 376 RFMLHYNFPPYSTGEVGRVGAPKRREIGHGRL----AKRALVAVLPSPEEFSYTMRVVSE 431
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ G ++L ++ + +L + A+ +
Sbjct: 432 ITESNGSSSMASVCGGCLSLLSAGVPLKAHVAGIAMGLILDNNKFAVLTD---------I 482
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T G + +Q + +++ L AKD +++ K
Sbjct: 483 LGDEDHLGDMDFKVAGTTEG-VTALQMDIKIQGITKEIMQIALAQAKDARLHILEQMKAA 541
Query: 238 IS 239
++
Sbjct: 542 VA 543
Score = 88.7 bits (218), Expect = 7e-16, Method: Composition-based stats.
Identities = 37/228 (16%), Positives = 75/228 (32%), Gaps = 27/228 (11%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGMLPR 68
++L +++ A + V GDT +L T ++E + + T G +P
Sbjct: 16 VTLETGEIARQAAAAVKVSMGDTVVLVAVTTNKEVKEGQDFFPLTVDYLERTYAAGKIPG 75
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
R G+Q + R+I R +R + QI+ + + +
Sbjct: 76 GFFKR------EGKQSEKEILTSRLIDRPIRPLFPEGFYHDIQIVAMVVSVDPEIDSDIP 129
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+ GA A G + A G + G +++ E + +D
Sbjct: 130 AMLGASAA-------------LVLSGVPFAGPIGAARVGYVNGVYVLNPTKAELAKSKLD 176
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
T ++ V+ A+ +D + D++ I +
Sbjct: 177 LVVAGTSK-AVLMVESEAKI--LPEDVMLGAVVYGHDQMQVAINAINE 221
>gi|239826663|ref|YP_002949287.1| polynucleotide phosphorylase/polyadenylase [Geobacillus sp. WCH70]
gi|259534128|sp|C5D9D5|PNP_GEOSW RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|239806956|gb|ACS24021.1| 3' exoribonuclease [Geobacillus sp. WCH70]
Length = 712
Score = 158 bits (398), Expect = 8e-37, Method: Composition-based stats.
Identities = 46/244 (18%), Positives = 85/244 (34%), Gaps = 18/244 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56
+R GR+ +++R +S V GS L G T +L+ T + ++ + +
Sbjct: 315 IRPDGRKIDEIRPLSSEVGVLPRTHGSGLFTRGQTQVLSVCTLGALGDVQILDGLGIEET 374
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P S G R+ G RAL VV I +
Sbjct: 375 KRFMHHYNFPPFSVGETGPMRGPGRREIGHGALG----ERALEPVVPSEKEFPYTIRLVS 430
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V++++G T A+I + +A+ D ++ + V + D
Sbjct: 431 EVLESNGSTSQASICASTLAMMDAGVPIKAPVAGIAMGLVKNDD---------NYTILTD 481
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T G + +Q + S++ L AK ++++
Sbjct: 482 IQGIEDHLGDMDFKVAGTAKG-VTALQMDIKIKGLSREILEEALQQAKKGRMEILEHMMQ 540
Query: 237 VISN 240
I
Sbjct: 541 TIRE 544
Score = 111 bits (277), Expect = 9e-23, Method: Composition-based stats.
Identities = 43/230 (18%), Positives = 85/230 (36%), Gaps = 26/230 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEK---VPMWIRNTKHGWITAEYGMLP 67
R + + ++K A G+ LV++GDT +L TAT ++ V + + G +P
Sbjct: 15 RPLVVEIGQLAKQANGAVLVRYGDTVVLNTATASKEAKNVDFFPLTVNYEERLYAVGKIP 74
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R GR ++ R+I R +R + QI+ + D
Sbjct: 75 GGFIKR------EGRPSEKAILASRLIDRPIRPLFAEGFRNEVQIVSMVMSVDQDCSPEM 128
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
AA+ GA +A +G +A ++ G + G +++ + D+
Sbjct: 129 AALFGASLA-------------LTISDIPFEGPIAGVTVGRVDGEFVINPTVEQSEKSDI 175
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
T I V+ A+ ++ + + + LI Q+++
Sbjct: 176 HLVVAGTKD-AINMVEAGADEVP--EEVILEAIMFGHEEVKRLIAFQEEI 222
>gi|33151538|ref|NP_872891.1| ribonuclease PH [Haemophilus ducreyi 35000HP]
gi|61216021|sp|Q7VP10|RNPH_HAEDU RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|33147758|gb|AAP95280.1| ribonuclease PH [Haemophilus ducreyi 35000HP]
Length = 238
Score = 158 bits (398), Expect = 8e-37, Method: Composition-based stats.
Identities = 119/240 (49%), Positives = 165/240 (68%), Gaps = 2/240 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR + R+ NQ+R + +TR ++YAEGS L++FG+T +L A++EE VP +++ + GW+T
Sbjct: 1 MRPNHRENNQIRPVKITRHYTRYAEGSVLIEFGETKVLCNASIEESVPRFLKGQQQGWVT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPR+T +R +REA G+Q GR+ EIQR+I RALR+VVDL ALG R I IDCDVIQ
Sbjct: 61 AEYGMLPRATHSRNQREAAKGKQSGRTMEIQRLIARALRAVVDLEALGERTITIDCDVIQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTAAITGA VAL D + + ++ + LKG VAAIS G++ + DL+Y
Sbjct: 121 ADGGTRTAAITGACVALQDAI--HKLIADGVLKTNPLKGLVAAISVGIVENEAVCDLEYV 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
ED+ + D N VM + G +VEVQG+AE FS +L+LA I L ++Q+ ++
Sbjct: 179 EDAKAETDMNVVMVEDGRLVEVQGTAEGKPFSHMELLQLLDLADQGINQLFEVQRQALAE 238
>gi|94264886|ref|ZP_01288660.1| Polyribonucleotide nucleotidyltransferase [delta proteobacterium
MLMS-1]
gi|93454656|gb|EAT04924.1| Polyribonucleotide nucleotidyltransferase [delta proteobacterium
MLMS-1]
Length = 703
Score = 158 bits (398), Expect = 8e-37, Method: Composition-based stats.
Identities = 50/242 (20%), Positives = 93/242 (38%), Gaps = 18/242 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ R+ +++R I+ GS L G+T +L +ATL +E+ +
Sbjct: 322 RIDNRRLDEVRPITSEVAALPRVHGSALFTRGETQVLVSATLGSGDDEQRIESLSGMNFK 381
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P G S R G RA+++V+ + I + +
Sbjct: 382 PFMLHYNFPPYCVGEVRFLRGPSRRDIGHGAL----AERAIQAVLPDADSFPYTIRVVSE 437
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
V++++G + A + GA ++L D M+ + + + +G AI +
Sbjct: 438 VLESNGSSSMATVCGASLSLMDAGVPMKKAVSGIAMGLIKEGEEVAILSD---------I 488
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D TD G I +Q + S++ LN AKD +++ +
Sbjct: 489 LGDEDHLGDMDFKVAGTDEG-ITALQMDIKVEGVSREIMTQALNQAKDARLHILEKMQQA 547
Query: 238 IS 239
+
Sbjct: 548 LE 549
Score = 104 bits (258), Expect = 1e-20, Method: Composition-based stats.
Identities = 46/230 (20%), Positives = 76/230 (33%), Gaps = 26/230 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLT----TATLEEKVPMWIRNTKHGWITAEYGML 66
R ++L ++K A GS LV +G + +L V ++ G +
Sbjct: 12 RTLTLETGRLAKQASGSVLVTYGQSVVLVTATAAREARASVDFLPLTIEYQERFYAVGRI 71
Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
P S R GR R+I R LR + Q+I +
Sbjct: 72 PGSFFRR-----EIGRPTENETLACRIIDRPLRPLFAAGYQNETQVIATVLSADNENDPE 126
Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
A+ GA A G VA + GM+ G +++ +
Sbjct: 127 LMAMIGASAA-------------LTVSHIPFNGPVAGVRVGMIDGEYVLNPPLDQRHNSR 173
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+D T +V V+G A +D + A + + LI LQ++
Sbjct: 174 LDLIVAGTSK-AVVMVEGGA--DGLPEDEVREGIFFAHEAMQPLIDLQEE 220
>gi|304438692|ref|ZP_07398630.1| tRNA nucleotidyltransferase [Selenomonas sp. oral taxon 149 str.
67H29BP]
gi|304368341|gb|EFM22028.1| tRNA nucleotidyltransferase [Selenomonas sp. oral taxon 149 str.
67H29BP]
Length = 248
Score = 158 bits (398), Expect = 8e-37, Method: Composition-based stats.
Identities = 111/240 (46%), Positives = 153/240 (63%), Gaps = 5/240 (2%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R R+ +Q+R + + R +YA+GS L++ G T ++ AT+EE+VP +++ T GW+TA
Sbjct: 3 RRDLRRADQLRPVRIERGYQRYADGSALIETGHTRVVCAATVEERVPFFLKGTGTGWVTA 62
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
EY MLP + R REAV G Q GR+QEIQR+IGRALR+VVD ALG R I IDCDV+QA
Sbjct: 63 EYSMLPGAGAERTAREAVRGHQSGRTQEIQRLIGRALRAVVDTKALGERTIHIDCDVLQA 122
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML-CGYPIVDLDYG 180
DGGTRTA++TGA+VAL + F ++ +VAA+S G+ P++DL Y
Sbjct: 123 DGGTRTASVTGAFVALVEACASFYAKRGIF----PVRDYVAAVSVGINAENEPLLDLCYE 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
EDS VD N VMT +G VEVQG+ E F++ A+L+L + I LI QK + +
Sbjct: 179 EDSAAMVDMNIVMTGAGVFVEVQGTGEGRAFARKELNALLDLGEQGIRTLIDQQKVALGD 238
>gi|237734516|ref|ZP_04564997.1| 3' exoribonuclease [Mollicutes bacterium D7]
gi|229382336|gb|EEO32427.1| 3' exoribonuclease [Coprobacillus sp. D7]
Length = 714
Score = 158 bits (398), Expect = 8e-37, Method: Composition-based stats.
Identities = 49/243 (20%), Positives = 89/243 (36%), Gaps = 18/243 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56
+R GR+ +++R + + GS L G+T +L+ AT E + +
Sbjct: 318 IRPDGRKIDEIRPLDSQIDLLPRVHGSALFTRGETQVLSVATLGAIGEHQKIDGLGLEDQ 377
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P S G + A R+ G RAL V+ I +
Sbjct: 378 KRFMHHYNFPPYSVGETGRMGAPGRREIGHGALG----ERALAQVIPSEEAFPYTIRVVS 433
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V++++G + A+I + +AL ++ + V KG + D
Sbjct: 434 EVLESNGSSSQASICASTMALMAAGVPIKAPVAGVAMGLVKKGDA---------YTILTD 484
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D TD+G I +Q + +++ L AK ++ D
Sbjct: 485 IQGMEDHLGDMDFKVAGTDAG-ICALQMDIKIDGITKEILQEALAQAKVARKQIMANMMD 543
Query: 237 VIS 239
I+
Sbjct: 544 AIA 546
Score = 108 bits (268), Expect = 9e-22, Method: Composition-based stats.
Identities = 46/238 (19%), Positives = 85/238 (35%), Gaps = 30/238 (12%)
Query: 13 EISLTRR-VSKYAEGSCLVKFGDTHLLTTATL---EEKVPMWIRNTKHGWITAEYGMLPR 68
+S+ ++K A G+ LV++ DT +L+T + V + + G +P
Sbjct: 14 NLSVEVGELAKQANGAVLVRYNDTVILSTVVAGKEPKNVDFFPLTVTYEEKLYSVGKIPG 73
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
R GR RMI R +R + Q + + D A
Sbjct: 74 GFLKR------EGRPSEHGTLTARMIDRPIRPLFADGFRNEVQSVNTVLSVDQDATPEMA 127
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+ GA +AL G +A ++ G++ G IV+ + ++
Sbjct: 128 AMLGASLALC-------------VSDIPFNGPIAGVNVGLVDGEFIVNGTPEQLENSLIN 174
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI----SNEV 242
T I V+ A+ S++ L ++I +LI Q+ V+ ++
Sbjct: 175 LEVAGTKD-AINMVEADAKE--VSEEVMLEALLFGHEKIKELIAFQEKVVEACGKEKI 229
>gi|237654670|ref|YP_002890984.1| ribonuclease PH [Thauera sp. MZ1T]
gi|237625917|gb|ACR02607.1| ribonuclease PH [Thauera sp. MZ1T]
Length = 243
Score = 158 bits (398), Expect = 8e-37, Method: Composition-based stats.
Identities = 126/242 (52%), Positives = 168/242 (69%), Gaps = 2/242 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR S RQ +Q+R + LTR + +AEGS LV+FG T +L TA++EE VP ++R GW+T
Sbjct: 1 MRPSLRQPDQLRAVRLTRGFTCHAEGSVLVEFGATRVLCTASVEETVPGFLRGKGQGWVT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPR+T R REA G+Q GR+QEIQR+IGR+LR+VVDL ALG RQI++DCDV+Q
Sbjct: 61 AEYGMLPRATHTRSAREAAKGKQSGRTQEIQRLIGRSLRAVVDLGALGERQIVVDCDVLQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTAAITGA VA+HD L + ++ VAA+S G+ G P++DLDY
Sbjct: 121 ADGGTRTAAITGACVAVHDALVGLVAA--GKLAHNPMREFVAAVSVGIHQGVPVLDLDYA 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
EDS D D N VMT+ G ++EVQG+AE FS+ A+L+LA+ L +LQ+ + +
Sbjct: 179 EDSDCDTDMNVVMTEGGGLIEVQGTAEGTPFSRAELDALLDLAELGGRQLFELQRGAVRS 238
Query: 241 EV 242
+
Sbjct: 239 AI 240
>gi|294011612|ref|YP_003545072.1| polyribonucleotide nucleotidyltransferase [Sphingobium japonicum
UT26S]
gi|292674942|dbj|BAI96460.1| polyribonucleotide nucleotidyltransferase [Sphingobium japonicum
UT26S]
Length = 771
Score = 158 bits (398), Expect = 8e-37, Method: Composition-based stats.
Identities = 51/243 (20%), Positives = 93/243 (38%), Gaps = 18/243 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKHG 57
R+ GR Q+R I GS L G+T + T TL E++ + +
Sbjct: 316 RIDGRTTTQIRPIEAMVGFLPRTHGSALFTRGETQAICTTTLGTKDAEQMIDGLTGLHYE 375
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + A R+ G + RAL V+ I + D
Sbjct: 376 SFMLHYNFPPYSVGEVGRFGAPGRREVGHGKL----AWRALHPVLPSKEEFPYTIRVLSD 431
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A + G +++ D ++ + + +L+G A+ +
Sbjct: 432 ITESNGSSSMATVCGGSLSMMDAGVPLKRPVSGIAMGLILEGKEFAVISD---------I 482
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T++G I +Q + A +Q+ F L AK+ A ++
Sbjct: 483 LGDEDHLGDMDFKVAGTEAG-ITTMQMDIKVAGITQEIFEVALRQAKEGRAHILGEMSKA 541
Query: 238 ISN 240
+S+
Sbjct: 542 LSS 544
Score = 98.8 bits (244), Expect = 5e-19, Method: Composition-based stats.
Identities = 33/233 (14%), Positives = 74/233 (31%), Gaps = 28/233 (12%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT----KHGWITAEYGMLPR 68
++L +++ A+ + L +G+T +L T + V + + G +P
Sbjct: 16 LTLETGRIARQADAAVLATYGETVVLCAVTAAKSVKEGQDFFPLTVHYQEKYSAAGRIPG 75
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
R + + + R+I R +R + +I +
Sbjct: 76 GFFKRERGA------TEKETLVSRLIDRPVRPLFPEGFYNEINVIAQVLSFDGESEPDIV 129
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+ A A G + A G G ++ E T ++D
Sbjct: 130 AMIAASAA-------------LTLSGVPFLGPIGAARVGYKDGEYQLNPSLDEVKTGELD 176
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
T + ++ V+ A+ S+D + A + ++ D ++ +
Sbjct: 177 LVVAATGN-AVMMVESEAKE--LSEDVMLGAVLFAHEASKKVVNAIID-LAEK 225
>gi|94269020|ref|ZP_01291349.1| Polyribonucleotide nucleotidyltransferase [delta proteobacterium
MLMS-1]
gi|93451373|gb|EAT02233.1| Polyribonucleotide nucleotidyltransferase [delta proteobacterium
MLMS-1]
Length = 703
Score = 158 bits (398), Expect = 8e-37, Method: Composition-based stats.
Identities = 50/242 (20%), Positives = 93/242 (38%), Gaps = 18/242 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ R+ +++R I+ GS L G+T +L +ATL +E+ +
Sbjct: 322 RIDNRRLDEVRPITSEVAALPRVHGSALFTRGETQVLVSATLGSGDDEQRIESLSGMNFK 381
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P G S R G RA+++V+ + I + +
Sbjct: 382 PFMLHYNFPPYCVGEVRFLRGPSRRDIGHGAL----AERAIQAVLPDADSFPYTIRVVSE 437
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
V++++G + A + GA ++L D M+ + + + +G AI +
Sbjct: 438 VLESNGSSSMATVCGASLSLMDAGVPMKKAVSGIAMGLIKEGEEVAILSD---------I 488
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D TD G I +Q + S++ LN AKD +++ +
Sbjct: 489 LGDEDHLGDMDFKVAGTDEG-ITALQMDIKVEGVSREIMTQALNQAKDARLHILEKMQQA 547
Query: 238 IS 239
+
Sbjct: 548 LE 549
Score = 104 bits (258), Expect = 1e-20, Method: Composition-based stats.
Identities = 46/234 (19%), Positives = 77/234 (32%), Gaps = 26/234 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLT----TATLEEKVPMWIRNTKHGWITAEYGML 66
R ++L ++K A GS LV +G + +L V ++ G +
Sbjct: 12 RTLTLETGRLAKQASGSVLVTYGQSVVLVTATAAREARASVDFLPLTIEYQERFYAVGRI 71
Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
P S R GR R+I R LR + Q+I +
Sbjct: 72 PGSFFRR-----EIGRPTENETLACRIIDRPLRPLFAAGYQNETQVIATVLSADNENDPE 126
Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
A+ GA A G VA + GM+ G +++ +
Sbjct: 127 LMAMIGASAA-------------LTVSHIPFNGPVAGVRVGMIDGEYVLNPPLDQRHNSR 173
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
+D T +V V+G A +D + A + + LI LQ+++
Sbjct: 174 LDLIVAGTSK-AVVMVEGGA--DGLPEDEVREGIFFAHEAMQPLIDLQEELCKE 224
>gi|167756799|ref|ZP_02428926.1| hypothetical protein CLORAM_02348 [Clostridium ramosum DSM 1402]
gi|167702974|gb|EDS17553.1| hypothetical protein CLORAM_02348 [Clostridium ramosum DSM 1402]
Length = 718
Score = 158 bits (398), Expect = 9e-37, Method: Composition-based stats.
Identities = 49/243 (20%), Positives = 89/243 (36%), Gaps = 18/243 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56
+R GR+ +++R + + GS L G+T +L+ AT E + +
Sbjct: 318 IRPDGRKIDEIRPLDSQIDLLPRVHGSALFTRGETQVLSVATLGAIGEHQKIDGLGLEDQ 377
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P S G + A R+ G RAL V+ I +
Sbjct: 378 KRFMHHYNFPPYSVGETGRMGAPGRREIGHGALG----ERALAQVIPSEEAFPYTIRVVS 433
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V++++G + A+I + +AL ++ + V KG + D
Sbjct: 434 EVLESNGSSSQASICASTMALMAAGVPIKAPVAGVAMGLVKKGDA---------YTILTD 484
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D TD+G I +Q + +++ L AK ++ D
Sbjct: 485 IQGMEDHLGDMDFKVAGTDAG-ICALQMDIKIDGITKEILQEALAQAKVARKQIMANMMD 543
Query: 237 VIS 239
I+
Sbjct: 544 AIA 546
Score = 108 bits (268), Expect = 9e-22, Method: Composition-based stats.
Identities = 46/238 (19%), Positives = 85/238 (35%), Gaps = 30/238 (12%)
Query: 13 EISLTRR-VSKYAEGSCLVKFGDTHLLTTATL---EEKVPMWIRNTKHGWITAEYGMLPR 68
+S+ ++K A G+ LV++ DT +L+T + V + + G +P
Sbjct: 14 NLSVEVGELAKQANGAVLVRYNDTVILSTVVAGKEPKNVDFFPLTVTYEEKLYSVGKIPG 73
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
R GR RMI R +R + Q + + D A
Sbjct: 74 GFLKR------EGRPSEHGTLTARMIDRPIRPLFADGFRNEVQSVNTVLSVDQDATPEMA 127
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+ GA +AL G +A ++ G++ G IV+ + ++
Sbjct: 128 AMLGASLALC-------------VSDIPFNGPIAGVNVGLVDGEFIVNGTPEQLENSLIN 174
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI----SNEV 242
T I V+ A+ S++ L ++I +LI Q+ V+ ++
Sbjct: 175 LEVAGTKD-AINMVEADAKE--VSEEVMLEALLFGHEKIKELIAFQEKVVEACGKEKI 229
>gi|20807834|ref|NP_623005.1| polynucleotide phosphorylase/polyadenylase [Thermoanaerobacter
tengcongensis MB4]
gi|81481549|sp|Q8RA43|PNP_THETN RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|20516395|gb|AAM24609.1| Polyribonucleotide nucleotidyltransferase (polynucleotide
phosphorylase) [Thermoanaerobacter tengcongensis MB4]
Length = 707
Score = 158 bits (398), Expect = 9e-37, Method: Composition-based stats.
Identities = 47/244 (19%), Positives = 87/244 (35%), Gaps = 18/244 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56
+R+ GR + +R I V GS + G T +LT AT + ++ I + +
Sbjct: 312 IRVDGRGLDDIRPIWCEVGVLPRTHGSAIFTRGQTQVLTVATLGAIGDIQILEGIGDEEF 371
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P S G R+ G RAL V+ I +
Sbjct: 372 KRYMHHYNFPPYSVGEVRPLRGPGRREIGHGAL----AERALEPVIPSEEEFPYTIRLVS 427
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V+ ++G T A++ G+ +AL D ++ + + + + D
Sbjct: 428 EVLSSNGSTSQASVCGSTLALMDAGVPIKAPVAGIAMGLIKEEDEV---------LILTD 478
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T+ G + +Q + +D L A+ +++ +
Sbjct: 479 IQGIEDFLGDMDFKVAGTEKG-VTAIQMDIKIPGIDRDILQMALEKARKARLYVLQKMLE 537
Query: 237 VISN 240
VI
Sbjct: 538 VIKE 541
Score = 108 bits (268), Expect = 1e-21, Method: Composition-based stats.
Identities = 39/234 (16%), Positives = 83/234 (35%), Gaps = 27/234 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKHGWITAEYGML 66
R++ + V++ A G+ VK+GDT +L TA E + + ++ G +
Sbjct: 13 RKLVVQTGKVAQQANGAAWVKYGDTVVLVTACASKEPREGIDFFPLTVEYEERLYSIGKI 72
Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
P R G+ ++ R+I R +R + Q+I + D
Sbjct: 73 PGGFIKR------EGKPSEKAILSARLIDRPIRPLFPEGYRNDVQVIATVLSVDPDAQPE 126
Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
A+ G+ VA G +++ G++ G +++ Y +
Sbjct: 127 IVAMIGSSVA-------------LSISDIPFNGPTGSVAVGLVDGKFVINPTYEQREKSL 173
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
+ T IV V+ A+ ++ + A I +++ + ++
Sbjct: 174 MHLVVSGTKD-AIVMVEAGAKEVP--EETILDAIVYAHQYIKQIVEFIEGIVKE 224
>gi|257096716|sp|B0RRB8|PNP_XANCB RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
Length = 704
Score = 158 bits (398), Expect = 9e-37, Method: Composition-based stats.
Identities = 42/242 (17%), Positives = 85/242 (35%), Gaps = 18/242 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
+R+ GR + +R IS+ V GS L G+T + TL + +V +
Sbjct: 315 VRIDGRALDTVRPISVQAGVLPRTHGSALFTRGETQAIVVTTLGTARDGQVIDAVAGEYK 374
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P S G + A R+ G + R + +V+ I +
Sbjct: 375 ENFLFHYNFPPYSVGECGRFGAPKRREIGHGRL----AKRGVLAVMPSLEEFPYTIRVVS 430
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
++ +++G + A++ G+ +AL D ++ + V + +
Sbjct: 431 EITESNGSSSMASVCGSSLALMDAGVPVKAPVAGIAMGLVKEDDRFVVLSD--------- 481
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T G + +Q + +++ L AK ++
Sbjct: 482 ILGDEDHLGDMDFKVAGTAEG-VSALQMDIKIEGITEEIMKQALQQAKAGRLHILGEMSK 540
Query: 237 VI 238
+
Sbjct: 541 AL 542
Score = 97.2 bits (240), Expect = 2e-18, Method: Composition-based stats.
Identities = 46/228 (20%), Positives = 78/228 (34%), Gaps = 27/228 (11%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTKHGWITAEYGMLPR 68
++L V++ A G+ +VK DT LL TA T E + + G +P
Sbjct: 15 VTLETGEVARQASGAVIVKMDDTVLLVTAVAAKTAREGQDFFPLTVDYQEKFYAGGRIPG 74
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
R GR + I R+I R +R + QII + D A
Sbjct: 75 GFFKR------EGRATEKETLISRLIDRPIRPLFPEDYKNEVQIIATVMSMNPDIDGDIA 128
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+ GA AL G + A G G I++ E ++
Sbjct: 129 ALIGASAALSLAGT-------------PFNGPIGAAKVGYKNGEYILNPTITELKDSQLE 175
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
T + ++ V+ +E A S++ + + +I + +
Sbjct: 176 LVVAGTAN-AVLMVE--SEAALLSEEVMLGAVTFGHREMQKVINIINE 220
>gi|218665115|ref|YP_002424891.1| polyribonucleotide nucleotidyltransferase [Acidithiobacillus
ferrooxidans ATCC 23270]
gi|257096668|sp|B7J4D8|PNP_ACIF2 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|218517328|gb|ACK77914.1| polyribonucleotide nucleotidyltransferase [Acidithiobacillus
ferrooxidans ATCC 23270]
Length = 690
Score = 158 bits (398), Expect = 9e-37, Method: Composition-based stats.
Identities = 47/243 (19%), Positives = 92/243 (37%), Gaps = 18/243 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHG 57
R+ GR +R I++ V GS L G+T L AT +E++ ++
Sbjct: 311 RIDGRDSKTVRPITIEAGVLPRTHGSALFTRGETQALVVATLGTKGDEQIIDALQGESRD 370
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P STG + R+ G + RA+ +V+ + + + +
Sbjct: 371 RFMLHYNFPPFSTGETGMVGSPKRREIGHGRL----AKRAIAAVLPTDSEFPYSLRVVSE 426
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
V++++G + A + GA +AL D ++ + + +G A+ +
Sbjct: 427 VLESNGSSSMATVCGASLALMDAGVPLKAPVAGVAMGLIKEGARFAVLTD---------I 477
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T+ G + +Q + +++ L A ++ L V
Sbjct: 478 LGDEDHLGDMDFKVAGTEQG-VTALQMDIKIDGITREIMAQALQQALAGRLHILGLMNGV 536
Query: 238 ISN 240
+S
Sbjct: 537 LSR 539
Score = 111 bits (276), Expect = 1e-22, Method: Composition-based stats.
Identities = 40/235 (17%), Positives = 81/235 (34%), Gaps = 28/235 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----HGWITAEYGML 66
R + L +++ A+G+ LV GDT +L TA ++ + G +
Sbjct: 11 RRLQLETGRMARQADGAVLVSSGDTVVLVTAVGRREMKPGQDFFPLTVNYQEKAYAAGKI 70
Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
P R GR + R+I R +R + + Q+I + D
Sbjct: 71 PGGFFKR------EGRPTEKETLTSRLIDRPIRPLFPKGFMNEVQVIATVVSVDRDNDPD 124
Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
A+ GA A G + A + G +++ Y + +T
Sbjct: 125 ILALVGASAA-------------LAVSGIPFNGPIGAARVAYIDGKYVLNPSYAQLTTSQ 171
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
+D T ++ V+ A++ S++ + + +I+ + ++ E
Sbjct: 172 LDLVVAGTRQ-AVLMVESEAQQ--LSEEIMLEAVMFGHAQFQPVIETI-EALARE 222
>gi|21231940|ref|NP_637857.1| polynucleotide phosphorylase/polyadenylase [Xanthomonas campestris
pv. campestris str. ATCC 33913]
gi|66767933|ref|YP_242695.1| polynucleotide phosphorylase/polyadenylase [Xanthomonas campestris
pv. campestris str. 8004]
gi|81306090|sp|Q4UW98|PNP_XANC8 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|81793552|sp|Q8P7V1|PNP_XANCP RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|21113669|gb|AAM41781.1| polynucleotide phosphorylase [Xanthomonas campestris pv. campestris
str. ATCC 33913]
gi|66573265|gb|AAY48675.1| polynucleotide phosphorylase [Xanthomonas campestris pv. campestris
str. 8004]
Length = 704
Score = 158 bits (398), Expect = 9e-37, Method: Composition-based stats.
Identities = 42/242 (17%), Positives = 85/242 (35%), Gaps = 18/242 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
+R+ GR + +R IS+ V GS L G+T + TL + +V +
Sbjct: 315 VRIDGRALDTVRPISVQAGVLPRTHGSALFTRGETQAIVVTTLGTARDGQVIDAVAGEYK 374
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P S G + A R+ G + R + +V+ I +
Sbjct: 375 ENFLFHYNFPPYSVGECGRFGAPKRREIGHGRL----AKRGVLAVMPSLEEFPYTIRVVS 430
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
++ +++G + A++ G+ +AL D ++ + V + +
Sbjct: 431 EITESNGSSSMASVCGSSLALMDAGVPVKAPVAGIAMGLVKEDDRFVVLSD--------- 481
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T G + +Q + +++ L AK ++
Sbjct: 482 ILGDEDHLGDMDFKVAGTAEG-VSALQMDIKIEGITEEIMKQALQQAKAGRLHILGEMSK 540
Query: 237 VI 238
+
Sbjct: 541 AL 542
Score = 97.2 bits (240), Expect = 2e-18, Method: Composition-based stats.
Identities = 46/228 (20%), Positives = 78/228 (34%), Gaps = 27/228 (11%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTKHGWITAEYGMLPR 68
++L V++ A G+ +VK DT LL TA T E + + G +P
Sbjct: 15 VTLETGEVARQASGAVIVKMDDTVLLVTAVAAKTAREGQDFFPLTVDYQEKFYAGGRIPG 74
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
R GR + I R+I R +R + QII + D A
Sbjct: 75 GFFKR------EGRATEKETLISRLIDRPIRPLFPEDYKNEVQIIATVMSMNPDIDGDIA 128
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+ GA AL G + A G G I++ E ++
Sbjct: 129 ALIGASAALSLAGT-------------PFNGPIGAAKVGYKNGEYILNPTITELKDSQLE 175
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
T + ++ V+ +E A S++ + + +I + +
Sbjct: 176 LVVAGTAN-AVLMVE--SEAALLSEEVMLGAVTFGHREMQKVINIINE 220
>gi|56698213|ref|YP_168585.1| polynucleotide phosphorylase/polyadenylase [Ruegeria pomeroyi
DSS-3]
gi|81348968|sp|Q5LN23|PNP_SILPO RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|56679950|gb|AAV96616.1| polyribonucleotide nucleotidyltransferase [Ruegeria pomeroyi DSS-3]
Length = 714
Score = 158 bits (398), Expect = 9e-37, Method: Composition-based stats.
Identities = 45/242 (18%), Positives = 90/242 (37%), Gaps = 17/242 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +R I + GS L G+T L TL +E+ +
Sbjct: 318 RIDGRDTTTVRPIVAETGLLPRTHGSALFTRGETQGLVVTTLGTGDDEQFIDALHGNFKS 377
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + + R+ G + RAL++V+ I + +
Sbjct: 378 NFLLHYNFPPYSVGEVGRVGSPGRREIGHGKL----AWRALQAVLPAPTDFPYTIRVVSE 433
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ G +++ D ++ + +L+ + + D+
Sbjct: 434 ITESNGSSSMASVCGGSLSMMDAGVPLKSAVAGVAMGLILEDDGS--------YAVLTDI 485
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T++G I +Q + A + + L+ AKD ++
Sbjct: 486 LGDEDHLGDMDFKVAGTENG-ITSLQMDIKVAGITPEIMEKALSQAKDGRMHILAEMNKA 544
Query: 238 IS 239
+S
Sbjct: 545 LS 546
Score = 100 bits (248), Expect = 2e-19, Method: Composition-based stats.
Identities = 27/228 (11%), Positives = 61/228 (26%), Gaps = 25/228 (10%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGN 72
++L +++ A+GS + G+T ++ T + E
Sbjct: 16 LTLESGKIARQADGSVVATLGETRVMANVTFAREQKPGQDFFPLTVHYQEKYYAAGKVP- 74
Query: 73 RVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITG 132
R + R+I R +R + ++ A+
Sbjct: 75 -GGFFKREARPTEKETLTARLIDRPIRPLFVPGFKNEVLVMCTVLSHDLVNDPDIVAMIA 133
Query: 133 AWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDST------ID 186
A A G +A G + G +++ +
Sbjct: 134 ASAA-------------LTISGVPFMGPIAGCRVGYVDGEYVLNPTVDDMQDLRLNPEQR 180
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
+D T ++ V+ A ++ + A +I ++ L
Sbjct: 181 LDLVVAGTKD-AVMMVESEAYE--LTEAEMLGAVTFAHAQIQPVVDLI 225
>gi|320528964|ref|ZP_08030056.1| polyribonucleotide nucleotidyltransferase [Selenomonas artemidis
F0399]
gi|320138594|gb|EFW30484.1| polyribonucleotide nucleotidyltransferase [Selenomonas artemidis
F0399]
Length = 690
Score = 157 bits (397), Expect = 9e-37, Method: Composition-based stats.
Identities = 45/242 (18%), Positives = 89/242 (36%), Gaps = 18/242 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56
+R GR N++R +S + GS L G T +LT T +E++ +
Sbjct: 310 IRPDGRALNEVRPVSCEVGILPRTHGSGLFTRGQTQVLTVTTLGSIGDEQIIDGLGPETT 369
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y S G + R+ G RAL ++ I +
Sbjct: 370 KHYLHHYNFPGYSVGEARPMRSPGRREIGHGAL----AERALFPMIPSIEDFPYTIRLVS 425
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
++++++G + ++ G+ ++L ++ + + V G +I
Sbjct: 426 EILESNGSSSMGSVCGSTLSLMCAGVPIKRPVSGVAMGLVRDGDDYSILTD--------- 476
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED+ D+D T G I +Q + A ++D + L AK+ A ++ +
Sbjct: 477 IQGMEDALGDMDFKVAGTAKG-ITAIQMDIKIAGITRDILASALAQAKEGRAFILGKMLE 535
Query: 237 VI 238
I
Sbjct: 536 CI 537
Score = 105 bits (262), Expect = 4e-21, Method: Composition-based stats.
Identities = 45/231 (19%), Positives = 83/231 (35%), Gaps = 27/231 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKHGWITAEYGML 66
R I + ++K A G+ LV++GDT +L TAT E V + + G +
Sbjct: 11 RNIIVEHGKMAKQANGAALVRYGDTVVLVTATASSAPREGVDFFPLTVDYEEKMYAAGKI 70
Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
P R GR + R+I R +R + QI+ + D
Sbjct: 71 PGGFIKR------EGRPSNDAVLCARLIDRPIRPLFPEGFRNDVQIVATVLSVDQDNPPE 124
Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
AA+ GA A G +A + G + G +++ E + +
Sbjct: 125 IAAMLGASCA-------------LTVSDIPFMGPIAGVRVGYINGAFVINPKEEERAVSE 171
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
++ + ++ V+ A S++ + I L++ QK++
Sbjct: 172 LNLTVAGSYD-AVMMVEAGANE--LSEEIVLDAILFGHAEIRRLVEFQKNI 219
>gi|307294011|ref|ZP_07573855.1| ribonuclease PH [Sphingobium chlorophenolicum L-1]
gi|306880162|gb|EFN11379.1| ribonuclease PH [Sphingobium chlorophenolicum L-1]
Length = 238
Score = 157 bits (397), Expect = 1e-36, Method: Composition-based stats.
Identities = 125/237 (52%), Positives = 163/237 (68%), Gaps = 2/237 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR SGR +QMREI++ + +AEGSCL+ FGDT +L TA++EEKVP ++R GW+T
Sbjct: 1 MRPSGRAPDQMREITMEPGFTIHAEGSCLISFGDTRVLCTASIEEKVPPFLRGKGSGWVT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPR+T R REA G+Q GR+QEIQR+IGR+LR+VVDL LG RQI++DCDVIQ
Sbjct: 61 AEYGMLPRATHTRGSREAAKGKQSGRTQEIQRLIGRSLRAVVDLEKLGERQIVVDCDVIQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTAAI+G+WVAL + + + V K VAAISCG+ G P++DLDY
Sbjct: 121 ADGGTRTAAISGSWVALRIAVDKLLASGALKEDPIVQK--VAAISCGIYKGTPVLDLDYA 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
EDS + DAN ++T G EVQ +AE AT+ ++ +L LA+ A + Q V
Sbjct: 179 EDSNAEADANLILTGDGKFAEVQATAEGATYDEEELLRLLRLARIGCAQIFAAQDKV 235
>gi|282882977|ref|ZP_06291581.1| tRNA nucleotidyltransferase [Peptoniphilus lacrimalis 315-B]
gi|281297184|gb|EFA89676.1| tRNA nucleotidyltransferase [Peptoniphilus lacrimalis 315-B]
Length = 238
Score = 157 bits (397), Expect = 1e-36, Method: Composition-based stats.
Identities = 106/235 (45%), Positives = 146/235 (62%), Gaps = 3/235 (1%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR RQ +++REI ++ A+GS L++ G+T ++ TA +EEKVP ++R + GW++
Sbjct: 1 MRTD-RQNSEIREIKISPDFVPNADGSVLIECGNTKVVCTAIIEEKVPPFLRGKEMGWVS 59
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEY MLP ST R R+ G+Q GR EIQR+IGR+LR VDL ALG R I +DCDVI
Sbjct: 60 AEYSMLPGSTVIRKVRDISRGKQDGRGTEIQRLIGRSLREAVDLKALGERTIWLDCDVIN 119
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRT +I G+++AL + NK +K V +IS G + G +VDLDY
Sbjct: 120 ADGGTRTTSINGSYLALEMAVNK--ALKNKRLEVNPIKCKVGSISVGKVKGIKLVDLDYK 177
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
EDS DVD N VM D I+E+QG++ER TF+ + L A+ I D+ K +
Sbjct: 178 EDSNADVDLNLVMNDKFEIIEIQGTSERDTFTAEELAEFLKFAQIGIKDIFKYME 232
>gi|281356100|ref|ZP_06242593.1| ribonuclease PH [Victivallis vadensis ATCC BAA-548]
gi|281317469|gb|EFB01490.1| ribonuclease PH [Victivallis vadensis ATCC BAA-548]
Length = 247
Score = 157 bits (397), Expect = 1e-36, Method: Composition-based stats.
Identities = 102/240 (42%), Positives = 147/240 (61%), Gaps = 4/240 (1%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT--KHGWI 59
R+ GR +++R+I +T + S L++ G T ++ +++ KVP W++N GWI
Sbjct: 3 RIDGRAPDELRKIVITPDYLSHPLASVLIRNGGTRVVCAVSIDAKVPAWMKNRKVPGGWI 62
Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119
T EYGMLP ST +R+KRE+ +G+QGGR+ EIQR+IGR+LR DL LG +DCDVI
Sbjct: 63 TCEYGMLPASTHDRMKRESSAGKQGGRTVEIQRLIGRSLRMSADLLKLGENTAYLDCDVI 122
Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179
ADGGTR A ITGA AL + K VAAIS G++ G P++DL Y
Sbjct: 123 DADGGTRCAGITGAATALAIACRRGVAK--GIFPENPFKESVAAISVGVIGGVPMLDLCY 180
Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
EDS +VD N VMT+SG +VEVQG+AE FS+ +++LA+ + + +Q++ +
Sbjct: 181 EEDSNAEVDMNVVMTESGKLVEVQGTAEGEPFSRARLNELIDLAEHGLKQVFAMQREAVE 240
>gi|30248196|ref|NP_840266.1| polynucleotide phosphorylase/polyadenylase [Nitrosomonas europaea
ATCC 19718]
gi|81584849|sp|Q82XT0|PNP_NITEU RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|30180081|emb|CAD84083.1| pnp; polyribonucleotide nucleotidyltransferase protein
[Nitrosomonas europaea ATCC 19718]
Length = 708
Score = 157 bits (397), Expect = 1e-36, Method: Composition-based stats.
Identities = 46/241 (19%), Positives = 93/241 (38%), Gaps = 18/241 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +R I++ V GS L G+T L TL +E+ ++
Sbjct: 315 RIDGRGTRTVRPITIRHGVLPRTHGSALFTRGETQALAITTLGTARDEQKIDALQGDYSE 374
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y M P +TG + R+ G + RAL +V+ + + +
Sbjct: 375 RFMLHYNMPPFATGETGRVGTPKRREIGHGRL----AKRALLAVIPPVEEFGYSMRVVSE 430
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
V +++G + A++ G ++L D ++ + + +G+ A+ +
Sbjct: 431 VTESNGSSSMASVCGGCLSLMDAGVPLKAHVAGIAMGLIKEGNRFAVLTD---------I 481
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T+ G I +Q + +++ L AK+ ++++ K
Sbjct: 482 LGDEDHLGDMDFKVAGTEHG-ITALQMDIKIQGITKEIMQVALLQAKEGRLHILEIMKQS 540
Query: 238 I 238
+
Sbjct: 541 L 541
Score = 109 bits (272), Expect = 4e-22, Method: Composition-based stats.
Identities = 37/233 (15%), Positives = 77/233 (33%), Gaps = 28/233 (12%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT----KHGWITAEYGMLPR 68
+++ ++K A G+ +V DT +L TA ++K + G +P
Sbjct: 15 LTIETGEIAKQAHGAVIVSMDDTVVLVTAVGDKKTKPGQDFFPLTVDYQEKFYSAGRIPG 74
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
S R GR + R+I R +R + Q++ +
Sbjct: 75 SFFKR------EGRPSEKETLTSRLIDRPIRPLFPDGFYNEVQVVAMVLSSDTEIDADIP 128
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+ G A G V A G + I++ + ++
Sbjct: 129 AMIGTSAA-------------LILSGIPFDGPVGAARVGYINNEYILNPTTTQLKESQLN 175
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
T ++ V+ +E S+D + D++ +I + + +++E
Sbjct: 176 LVVAGTQK-AVLMVE--SEADELSEDVMLGAVTYGHDQMQQVIDMINE-LADE 224
>gi|163784067|ref|ZP_02179020.1| polynucleotide phosphorylase/polyadenylase [Hydrogenivirga sp.
128-5-R1-1]
gi|159880666|gb|EDP74217.1| polynucleotide phosphorylase/polyadenylase [Hydrogenivirga sp.
128-5-R1-1]
Length = 708
Score = 157 bits (397), Expect = 1e-36, Method: Composition-based stats.
Identities = 43/242 (17%), Positives = 82/242 (33%), Gaps = 19/242 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE-----EKVPMWIRNTKH 56
R+ GR+ +++R I + + GS L G T L TL + +
Sbjct: 316 RIDGRKPDEIRPIWIKVGMLPRVHGSALFTRGQTQALGVVTLGAPGEEQIEESIEEGEEK 375
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P S G A S R+ G RAL ++ I +
Sbjct: 376 KRFMLHYNFPPFSVGEARPPRAPSRREIGHGAL----AERALEPLIPSEEDFPYVIRVVS 431
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
++++++G T A + ++L D M+ + + + + D
Sbjct: 432 EILESNGSTSMATVCAGSLSLFDAGVPMQKHVAGIAMGLLKEEDE---------YIILTD 482
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T G + +Q + +++ L A+ ++ L +
Sbjct: 483 ILGDEDHLGDMDFKVAGTRDG-VTAIQMDIKIKGLTKEILEKALQQARKARFHILDLMYE 541
Query: 237 VI 238
I
Sbjct: 542 AI 543
Score = 98.8 bits (244), Expect = 5e-19, Method: Composition-based stats.
Identities = 52/239 (21%), Positives = 83/239 (34%), Gaps = 31/239 (12%)
Query: 13 EISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRN----TKHGWITAEYGMLP 67
EIS+ +K A G+ +VK G+T + A + + I ++ T YG +P
Sbjct: 19 EISIETGYFAKQANGAVIVKSGETEVFVAAVVSSEAQPDIDFLPLTVEYREKTYAYGKIP 78
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R G+ R + R+I R +R + I
Sbjct: 79 GGFVKR------EGKPSNREILVSRLIDRPIRPLFPKGFHNDVIITAMTLSADDKNDPDV 132
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
AITG AL +G +A + + G I + Y E D+
Sbjct: 133 LAITGVSAALM-------------ISEAPFEGPIAGVRVARVDGKFIANPTYEERDKSDM 179
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADL----IKLQKDVISNEV 242
D T IV V+G +E ++ + A + I L I+LQK V ++
Sbjct: 180 DIVVAGTKD-AIVMVEGGSEEVP--EEEILEAIMFAHEHIKQLIDFQIELQKKVGKEKI 235
>gi|94497007|ref|ZP_01303581.1| Polyribonucleotide nucleotidyltransferase [Sphingomonas sp. SKA58]
gi|94423683|gb|EAT08710.1| Polyribonucleotide nucleotidyltransferase [Sphingomonas sp. SKA58]
Length = 778
Score = 157 bits (397), Expect = 1e-36, Method: Composition-based stats.
Identities = 51/243 (20%), Positives = 93/243 (38%), Gaps = 18/243 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKHG 57
R+ GR Q+R I GS L G+T + T TL E++ + +
Sbjct: 323 RIDGRTTTQIRPIEAMVGFLPRTHGSALFTRGETQAICTTTLGTKDAEQMIDGLTGLHYE 382
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + A R+ G + RAL V+ I + D
Sbjct: 383 NFMLHYNFPPYSVGEVGRFGAPGRREVGHGKL----AWRALHPVLPSKDEFPYTIRVLSD 438
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A + G +++ D ++ + + +L+G A+ +
Sbjct: 439 ITESNGSSSMATVCGGSLSMMDAGVPLKRPVSGIAMGLILEGKDYAVISD---------I 489
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T++G I +Q + A +Q+ F L AK+ A ++
Sbjct: 490 LGDEDHLGDMDFKVAGTENG-ITTMQMDIKVAGITQEIFEVALRQAKEGRAHILGEMSKA 548
Query: 238 ISN 240
+S+
Sbjct: 549 LSS 551
Score = 102 bits (253), Expect = 5e-20, Method: Composition-based stats.
Identities = 33/226 (14%), Positives = 69/226 (30%), Gaps = 27/226 (11%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT----KHGWITAEYGMLPR 68
++L +++ A+ + L +G+T +L T + V + + G +P
Sbjct: 23 LTLETGRIARQADAAVLATYGETVVLCAVTAAKSVKDGQDFFPLTVHYQEKYSAAGRIPG 82
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
R + + + R+I R +R + +I +
Sbjct: 83 GFFKRERGA------TEKETLVSRLIDRPIRPLFPEGFYNEINVIAQVLSFDGESEPDIV 136
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+ A A G + A G G ++ E D+D
Sbjct: 137 AMIAASAA-------------LTLSGVPFMGPIGAARVGYKDGEYQLNPSLEEAKEGDLD 183
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
T + ++ V+ A+ S+D + A D ++
Sbjct: 184 LVVAATGN-AVMMVESEAKE--LSEDVMLGAVMFAHDAAKKVVNAI 226
>gi|332159681|ref|YP_004296258.1| ribonuclease PH [Yersinia enterocolitica subsp. palearctica
105.5R(r)]
gi|318603777|emb|CBY25275.1| ribonuclease PH [Yersinia enterocolitica subsp. palearctica Y11]
gi|325663911|gb|ADZ40555.1| ribonuclease PH [Yersinia enterocolitica subsp. palearctica
105.5R(r)]
Length = 238
Score = 157 bits (397), Expect = 1e-36, Method: Composition-based stats.
Identities = 118/240 (49%), Positives = 158/240 (65%), Gaps = 2/240 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR + R Q+R ++LTR +K+AEGS LV+FGDT +L TAT+EE VP +++ GWIT
Sbjct: 1 MRPADRAAQQVRPLTLTRNYTKHAEGSVLVEFGDTKVLCTATVEEGVPRFLKGQGQGWIT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPRST +R REA G+QGGR+ EIQR+I R+LR+ VDL LG I +DCDV+Q
Sbjct: 61 AEYGMLPRSTHSRNAREAAKGKQGGRTLEIQRLIARSLRAAVDLKKLGEFTITLDCDVLQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+I+GA VAL D L + + +KG VAA+S G++ G + DL+Y
Sbjct: 121 ADGGTRTASISGACVALADALNKLVAS--GKLKANPMKGLVAAVSVGIVKGEALCDLEYV 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
EDS + D N VM + G ++EVQG+AE FS + +L LA+ I + QK +
Sbjct: 179 EDSAAETDMNVVMMEDGRMIEVQGTAEGEPFSHEELLTLLALARGGIETIFLAQKAALEQ 238
>gi|291456091|ref|ZP_06595481.1| tRNA nucleotidyltransferase [Bifidobacterium breve DSM 20213]
gi|291382500|gb|EFE90018.1| tRNA nucleotidyltransferase [Bifidobacterium breve DSM 20213]
Length = 258
Score = 157 bits (397), Expect = 1e-36, Method: Composition-based stats.
Identities = 103/229 (44%), Positives = 151/229 (65%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+R GR+ +++R + +TR + EGS L++ G+T ++ TAT VP W +++ GW+T
Sbjct: 18 IRADGRKVDELRPVRITRHFTDAPEGSVLIECGNTRVMCTATFTPGVPRWRKDSGLGWVT 77
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEY MLPR+T R RE+V G+ GGR+ EI R+IGR LR V+D+ ALG QI +DCDV+Q
Sbjct: 78 AEYAMLPRATSERTDRESVRGKIGGRTHEISRLIGRCLRGVIDMKALGENQIQLDCDVLQ 137
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA++TGA+VAL D + E + +VLK +V+A+S G++ G P++DL Y
Sbjct: 138 ADGGTRTASVTGAYVALVDAVNWAEKHHHIKSADKVLKDYVSAVSVGVINGTPMLDLPYI 197
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIAD 229
EDS D N MT SG +E+QG+AE F++ +L+LA+ +
Sbjct: 198 EDSQAMTDMNVAMTGSGTFIEIQGTAEHRPFNRAELGTLLDLAEKGNKE 246
>gi|307293331|ref|ZP_07573177.1| polyribonucleotide nucleotidyltransferase [Sphingobium
chlorophenolicum L-1]
gi|306881397|gb|EFN12613.1| polyribonucleotide nucleotidyltransferase [Sphingobium
chlorophenolicum L-1]
Length = 781
Score = 157 bits (397), Expect = 1e-36, Method: Composition-based stats.
Identities = 51/243 (20%), Positives = 93/243 (38%), Gaps = 18/243 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKHG 57
R+ GR Q+R I GS L G+T + T TL E++ + +
Sbjct: 316 RIDGRTTTQIRPIEAIVGFLPRTHGSALFTRGETQSICTTTLGTKDAEQMIDGLNGVYYE 375
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + A R+ G + RAL V+ I + D
Sbjct: 376 NFMLHYNFPPYSVGEVGRFGAPGRREVGHGKL----AWRALHPVLPSKDEFPYTIRVLSD 431
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A + G +++ D ++ + + +L+G A+ +
Sbjct: 432 ITESNGSSSMATVCGGSLSMMDAGVPLKRPVSGIAMGLILEGKNFAVLSD---------I 482
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T++G I +Q + A +Q+ F L AK+ A ++
Sbjct: 483 LGDEDHLGDMDFKVAGTEAG-ITTMQMDIKVAGITQEIFEVALRQAKEGRAHILGEMSKA 541
Query: 238 ISN 240
+S+
Sbjct: 542 LSS 544
Score = 101 bits (251), Expect = 8e-20, Method: Composition-based stats.
Identities = 34/233 (14%), Positives = 74/233 (31%), Gaps = 28/233 (12%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT----KHGWITAEYGMLPR 68
++L +++ A+ + L +G+T +L T + V + + G +P
Sbjct: 16 LTLETGRIARQADAAVLATYGETVVLCAVTAAKSVKEGQDFFPLTVHYQEKYSAAGRIPG 75
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
R + + + R+I R +R + +I +
Sbjct: 76 GFFKRERGA------TEKETLVSRLIDRPIRPLFPEGFYNEINVIAQVLSFDGESEPDIV 129
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+ A A G + A G G ++ E T ++D
Sbjct: 130 AMIAASAA-------------LTLSGVPFLGPIGAARVGYKDGEYQLNPSLDEVKTGELD 176
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
T S ++ V+ A+ S+D + A + ++ D ++ +
Sbjct: 177 LVVAATGS-AVMMVESEAKE--LSEDVMLGAVLFAHEASKKIVNAIID-LAEK 225
>gi|294011052|ref|YP_003544512.1| ribonuclease PH [Sphingobium japonicum UT26S]
gi|292674382|dbj|BAI95900.1| ribonuclease PH [Sphingobium japonicum UT26S]
Length = 238
Score = 157 bits (397), Expect = 1e-36, Method: Composition-based stats.
Identities = 124/237 (52%), Positives = 162/237 (68%), Gaps = 2/237 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR SGR +QMR+I++ + +AEGSCLV FGDT +L TA++EEKVP ++R GW+T
Sbjct: 1 MRPSGRAPDQMRDITMEPGFTIHAEGSCLVSFGDTRVLCTASIEEKVPPFLRGKGSGWVT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPR+T R REA G+Q GR+QEIQR+IGR+LR+VVDL LG RQI++DCDVIQ
Sbjct: 61 AEYGMLPRATHTRGSREAAKGKQSGRTQEIQRLIGRSLRAVVDLQKLGERQIVVDCDVIQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTAAI+G+WVAL + + + V K VAAISCG+ G P++DLDY
Sbjct: 121 ADGGTRTAAISGSWVALRIAIDGLLASGALAEDPIVQK--VAAISCGIYNGTPVLDLDYA 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
EDS + DAN ++T G EVQ +AE AT+ ++ +L LA+ A + Q
Sbjct: 179 EDSNAEADANLILTGDGKFAEVQATAEGATYDEEELLRLLRLARIGCAQIFAAQDKA 235
>gi|328948917|ref|YP_004366254.1| polyribonucleotide nucleotidyltransferase [Treponema succinifaciens
DSM 2489]
gi|328449241|gb|AEB14957.1| Polyribonucleotide nucleotidyltransferase [Treponema succinifaciens
DSM 2489]
Length = 696
Score = 157 bits (397), Expect = 1e-36, Method: Composition-based stats.
Identities = 50/244 (20%), Positives = 85/244 (34%), Gaps = 16/244 (6%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
+R+ GR +R I+ V GS L G+T L TL +E+V I +
Sbjct: 313 LRIDGRGTEDIRPITCEVNVLPRPHGSALFTRGETQSLAVTTLGTAMDEQVYDDIEGDRT 372
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P S G K R+ G R+L ++ + I +
Sbjct: 373 ENFILHYNFPPYSVGEVGKLTTGR-REIGHGNL----ARRSLAPMIPSRSEFPYTIRVVS 427
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
++++++G + A+ G ++L M+ + + G + D
Sbjct: 428 EIMESNGSSSQASTCGGCLSLLAAGVPMKKMVAGIAMGLITDGPQY------KKYAILSD 481
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T G I Q + A S D L AK ++ + +
Sbjct: 482 ILGEEDHLGDMDFKVAGTRDG-ITGFQMDIKIAGVSMDIMRRALEQAKRGRNHILDIMEK 540
Query: 237 VISN 240
IS
Sbjct: 541 CISK 544
Score = 99 bits (247), Expect = 3e-19, Method: Composition-based stats.
Identities = 46/232 (19%), Positives = 80/232 (34%), Gaps = 27/232 (11%)
Query: 13 EISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----HGWITAEYGMLP 67
E+ L + K A G + G T ++ T +V + + G +P
Sbjct: 13 ELILETGKIGKQANGCVYAQIGGTAVIATVCASSEVKEGLDFVPVTVEYNEKFYAAGKIP 72
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R GR + + R+I R +R + + S QI+ C I
Sbjct: 73 GGFVKR------EGRPKDKEILVSRLIDRPMRPLFETSFGREIQIVPTCVSIDGVNPPDI 126
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
A+ + A+ G VA + G L G I++ Y + I +
Sbjct: 127 LAVLASSAAV-------------SISDIPFHGPVAGVRVGYLNGEYILNPTYEQMEKIQL 173
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
+ T G V+G A S++ L A+ I D+ LQ++++
Sbjct: 174 EIVVAGTKDG-FTMVEGGANE--VSEEVMLGALEKAQGFITDMCLLQEELVK 222
>gi|261419469|ref|YP_003253151.1| polynucleotide phosphorylase/polyadenylase [Geobacillus sp.
Y412MC61]
gi|319766284|ref|YP_004131785.1| polyribonucleotide nucleotidyltransferase [Geobacillus sp.
Y412MC52]
gi|261375926|gb|ACX78669.1| polyribonucleotide nucleotidyltransferase [Geobacillus sp.
Y412MC61]
gi|317111150|gb|ADU93642.1| polyribonucleotide nucleotidyltransferase [Geobacillus sp.
Y412MC52]
Length = 723
Score = 157 bits (397), Expect = 1e-36, Method: Composition-based stats.
Identities = 44/244 (18%), Positives = 85/244 (34%), Gaps = 18/244 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56
+R GR+ +++R +S V GS L G T +L+ T + ++ + +
Sbjct: 315 IRPDGRKVDEIRPLSSAVGVLPRTHGSGLFTRGQTQVLSVCTLGALGDVQILDGLDLEES 374
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P S G R+ G RAL VV I +
Sbjct: 375 KRFMHHYNFPPFSVGETGPMRGPGRREIGHGALG----ERALEPVVPSEREFPYTIRLVS 430
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V++++G T A+I + +A+ D ++ + V + D
Sbjct: 431 EVLESNGSTSQASICASTLAMMDAGVPIKAPVAGIAMGLVKNDD---------HYTILTD 481
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T G + +Q + +++ L A+ +++
Sbjct: 482 IQGIEDHLGDMDFKVAGTRKG-VTALQMDIKIKGLTREILEEALMQARKGRLEILDHMMQ 540
Query: 237 VISN 240
+S
Sbjct: 541 TLSE 544
Score = 111 bits (278), Expect = 7e-23, Method: Composition-based stats.
Identities = 42/230 (18%), Positives = 85/230 (36%), Gaps = 26/230 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEK---VPMWIRNTKHGWITAEYGMLP 67
R + + ++K A G+ LV++GDT +L+TAT + V + + G +P
Sbjct: 15 RPLIVETGELAKQANGAALVRYGDTVVLSTATASREAKNVDFFPLTVNYEERLYAVGKIP 74
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R GR ++ + R+I R +R + Q++ + D
Sbjct: 75 GGFIKR------EGRPSEKAILVSRLIDRPIRPLFAEGFRNEVQVVSMVMSVDQDCAPEV 128
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
AA+ G+ VA +G +A + G + G +++ + D+
Sbjct: 129 AALIGSSVA-------------LTISDIPFEGPIAGVIVGRVDGQFVINPTVEQMEKSDL 175
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
T I V+ A+ ++ + + + LI Q+++
Sbjct: 176 HLVVAGTKD-AINMVEAGADEVP--EEVILEAIMFGHEEVKRLIAFQEEI 222
>gi|330813312|ref|YP_004357551.1| polyribonucleotide nucleotidyltransferase [Candidatus Pelagibacter
sp. IMCC9063]
gi|327486407|gb|AEA80812.1| polyribonucleotide nucleotidyltransferase [Candidatus Pelagibacter
sp. IMCC9063]
Length = 695
Score = 157 bits (397), Expect = 1e-36, Method: Composition-based stats.
Identities = 47/243 (19%), Positives = 87/243 (35%), Gaps = 19/243 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ R+ N++R+I V GS L G+T L ATL +E+ + +
Sbjct: 313 RIDRRKLNEVRDIKCEVGVLPKVHGSSLFTRGETQALVVATLGTSDDEQRLETLDGAERS 372
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + R+ G + RA+ S + I +
Sbjct: 373 RFMLHYNFPPYSVGEVGRIGTGR-REIGHGKL----AWRAINSSLPSKEEFPYTFRIVSE 427
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A + GA +AL D ++ + + +G +I +
Sbjct: 428 ITESNGSSSMATVCGASLALMDAGVPIKTPIAGIAMGLIKEGDDYSILSD---------I 478
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T G I +Q + + D L+ AK+ ++
Sbjct: 479 LGDEDHLGDMDFKVAGTKDG-ITSLQMDIKITGITFDIMEKALDQAKEGRIHILGEMAKA 537
Query: 238 ISN 240
++
Sbjct: 538 LTE 540
Score = 105 bits (261), Expect = 6e-21, Method: Composition-based stats.
Identities = 38/229 (16%), Positives = 80/229 (34%), Gaps = 27/229 (11%)
Query: 13 EISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----HGWITAEYGMLP 67
+++L V++ A+G+ ++ G+T +L TA ++ + + G +P
Sbjct: 15 KLTLETGRVARQADGAVMLTCGETVILATAVAAKQAKPDMDFFPLTVNYQEKYYAAGKIP 74
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R R I R+I R +R + S Q++ +
Sbjct: 75 GGYFKR------EARPTEAETLISRLIDRPIRPLFPSSFRNETQVLPTVISYDKENDPEA 128
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
A+ + AL VAA GM+ G +++ + +
Sbjct: 129 LALIASSAALAISGIPFMG-------------PVAAAKVGMIDGEFVLNPTKEQIKDSQL 175
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ T+ ++ V+ +E + S+ + D+ ++I L KD
Sbjct: 176 ELIVAGTED-AVLMVE--SEASGLSEKQMLDAVKFGHDKAKEVINLIKD 221
>gi|307264921|ref|ZP_07546483.1| polyribonucleotide nucleotidyltransferase [Thermoanaerobacter
wiegelii Rt8.B1]
gi|306920179|gb|EFN50391.1| polyribonucleotide nucleotidyltransferase [Thermoanaerobacter
wiegelii Rt8.B1]
Length = 700
Score = 157 bits (397), Expect = 1e-36, Method: Composition-based stats.
Identities = 48/244 (19%), Positives = 88/244 (36%), Gaps = 18/244 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56
+R+ GR + +R I V GS + G T +LT AT + ++ I + +
Sbjct: 312 IRVDGRGLDDIRPIWCEVGVLPRTHGSAIFTRGQTQVLTVATLGALGDIQILDGIGDEEA 371
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P S G R+ G RAL V+ I +
Sbjct: 372 KRYMHHYNFPPYSVGEVRPLRGPGRREIGHGALG----ERALEPVIPSEEEFPYTIRLVS 427
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V+ ++G T A++ G+ +AL D ++ + + +G V ++
Sbjct: 428 EVLSSNGSTSQASVCGSTLALMDAGVPIKAPVAGVAMGLIKEGDVVSVLTD--------- 478
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T+ G I +Q + ++ L A+ ++ +
Sbjct: 479 IQGIEDFLGDMDFKVAGTEKG-ITAIQMDIKIPGIDKEILKMALEKARRGRLYILSKMLE 537
Query: 237 VISN 240
VI
Sbjct: 538 VIKE 541
Score = 114 bits (284), Expect = 1e-23, Method: Composition-based stats.
Identities = 40/234 (17%), Positives = 84/234 (35%), Gaps = 27/234 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKHGWITAEYGML 66
R++ + V++ A G+ VK+GDT +L T E + + ++ G +
Sbjct: 13 RKLLVQTGKVAQQANGAAWVKYGDTVVLVTVCASKEPREGIDFFPLTVEYEERLYSVGKI 72
Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
P R G+ ++ R+I R +R + Q+I + D
Sbjct: 73 PGGFIKR------EGKPSEKAILSARLIDRPIRPLFPHGYRNDVQVIATVLSVDPDVQPE 126
Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
A+ G+ VA G A++ G++ G I++ ++ +
Sbjct: 127 IVAMIGSSVA-------------LSISDIPFNGPTGAVAVGLVDGQFIINPNHEQREKSL 173
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
+ T IV V+ A+ ++ + A + I +I ++++
Sbjct: 174 MHLVVSGTKD-AIVMVEAGAKEVP--EETMLDAIMYAHEYIKQIIGFIEEIVKE 224
>gi|118619118|ref|YP_907450.1| ribonuclease PH [Mycobacterium ulcerans Agy99]
gi|166228296|sp|A0PUG0|RNPH_MYCUA RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|118571228|gb|ABL05979.1| ribonuclease RphA [Mycobacterium ulcerans Agy99]
Length = 259
Score = 157 bits (397), Expect = 1e-36, Method: Composition-based stats.
Identities = 107/238 (44%), Positives = 154/238 (64%), Gaps = 1/238 (0%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R GR+++++R + +TR ++ GS L++FG T ++ TA++ E V W + + GW+TA
Sbjct: 4 REDGRRDDELRPVVITRGFTENPAGSVLIEFGRTKVMCTASVTEGVSRWRKGSGLGWLTA 63
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
EY MLP +T R RE+V GR GGR+QEI R++GR+LR+ +DL+ALG I +DCDV+QA
Sbjct: 64 EYAMLPSATHTRSDRESVKGRVGGRTQEISRLVGRSLRACIDLAALGENTIAVDCDVLQA 123
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
DGGTRTAAITGA+VAL D + + K + L +AA+S G++ G VDL Y E
Sbjct: 124 DGGTRTAAITGAYVALADA-VNYLAAAGKLSDPRPLSCAIAAVSVGVVDGRVRVDLPYEE 182
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
DS +VD N V TD+G +VEVQG+ E ATF + +L++A L Q D ++
Sbjct: 183 DSRAEVDMNVVATDTGTLVEVQGTGEGATFPRSTLDKLLDMALGACDTLFAAQCDALA 240
>gi|198282699|ref|YP_002219020.1| polyribonucleotide nucleotidyltransferase [Acidithiobacillus
ferrooxidans ATCC 53993]
gi|226702590|sp|B5EMD4|PNP_ACIF5 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|198247220|gb|ACH82813.1| Polyribonucleotide nucleotidyltransferase [Acidithiobacillus
ferrooxidans ATCC 53993]
Length = 692
Score = 157 bits (397), Expect = 1e-36, Method: Composition-based stats.
Identities = 47/243 (19%), Positives = 92/243 (37%), Gaps = 18/243 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHG 57
R+ GR +R I++ V GS L G+T L AT +E++ ++
Sbjct: 313 RIDGRDSKTVRPITIEAGVLPRTHGSALFTRGETQALVVATLGTKGDEQIIDALQGESRD 372
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P STG + R+ G + RA+ +V+ + + + +
Sbjct: 373 RFMLHYNFPPFSTGETGMVGSPKRREIGHGRL----AKRAIAAVLPTDSEFPYSLRVVSE 428
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
V++++G + A + GA +AL D ++ + + +G A+ +
Sbjct: 429 VLESNGSSSMATVCGASLALMDAGVPLKAPVAGVAMGLIKEGARFAVLTD---------I 479
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T+ G + +Q + +++ L A ++ L V
Sbjct: 480 LGDEDHLGDMDFKVAGTEQG-VTALQMDIKIDGITREIMAQALQQALAGRLHILGLMNGV 538
Query: 238 ISN 240
+S
Sbjct: 539 LSR 541
Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats.
Identities = 40/235 (17%), Positives = 81/235 (34%), Gaps = 28/235 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----HGWITAEYGML 66
R + L +++ A+G+ LV GDT +L TA ++ + G +
Sbjct: 13 RRLQLETGRMARQADGAVLVSSGDTVVLVTAVGRREMKPGQDFFPLTVNYQEKAYAAGKI 72
Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
P R GR + R+I R +R + + Q+I + D
Sbjct: 73 PGGFFKR------EGRPTEKETLTSRLIDRPIRPLFPKGFMNEVQVIATVVSVDRDNDPD 126
Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
A+ GA A G + A + G +++ Y + +T
Sbjct: 127 ILALVGASAA-------------LAVSGIPFNGPIGAARVAYIDGKYVLNPSYAQLTTSQ 173
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
+D T ++ V+ A++ S++ + + +I+ + ++ E
Sbjct: 174 LDLVVAGTRQ-AVLMVESEAQQ--LSEEIMLEAVMFGHAQFQPVIETI-EALARE 224
>gi|269123180|ref|YP_003305757.1| Polyribonucleotide nucleotidyltransferase [Streptobacillus
moniliformis DSM 12112]
gi|268314506|gb|ACZ00880.1| Polyribonucleotide nucleotidyltransferase [Streptobacillus
moniliformis DSM 12112]
Length = 732
Score = 157 bits (397), Expect = 1e-36, Method: Composition-based stats.
Identities = 47/243 (19%), Positives = 90/243 (37%), Gaps = 18/243 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R GR+ +++R ++ V K GS L G+T L TATL +E++ + +
Sbjct: 340 RADGRKIDEIRPLNAQIDVLKMPHGSALFTRGETQALVTATLGSKEDEQIIDGMEGEYNK 399
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G A R+ G RAL++V+ L + + +
Sbjct: 400 KFFLHYNFPPFSVGEAGFMRAPGRRELGHGNL----AERALKAVMPLIDDFPYTVRVVSE 455
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A+I G +AL ++ + + + + +
Sbjct: 456 ITESNGSSSQASICGGSLALMAAGVPIKGTVAGIAMGLIKEAENFTVLTD---------I 506
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T G I +Q + +++ L A +I++ +
Sbjct: 507 QGLEDHLGDMDFKVAGTKKG-ITAIQMDIKIEGINKEIMEIALTQAHKGRMHIIEVMEAT 565
Query: 238 ISN 240
I
Sbjct: 566 IPE 568
Score = 82.6 bits (202), Expect = 5e-14, Method: Composition-based stats.
Identities = 37/230 (16%), Positives = 77/230 (33%), Gaps = 21/230 (9%)
Query: 13 EISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG 71
E+ + +++ A GS LV + T + +T +Y +TG
Sbjct: 15 EVKIETGEIARQAGGSVLVT---SGGTTVLVTTTRSKEVKEGQDFFPLTVDYIEKFYATG 71
Query: 72 NRVKREAVSG-RQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAI 130
+ I R+I R +R + + ++I+ A
Sbjct: 72 KFPGGFIKRESKPSTEEVLISRLIDRPIRPLFPEGFFNAVHVVINVVSFDGINMPEDIAT 131
Query: 131 TGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDAN 190
G A G VA ++ G + G I++ D + + +D+ +
Sbjct: 132 IGVSFA-------------LGLSDIPFSGPVAGVTVGYVNGEYIINPDKEQRANMDIYLS 178
Query: 191 FVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
T S I V+ A S++ + L + I + + Q+ ++++
Sbjct: 179 VAGTKS-AITMVEAGASE--VSEEEMLNAIMLGHEEIKKICEQQETILNS 225
>gi|261364736|ref|ZP_05977619.1| polyribonucleotide nucleotidyltransferase [Neisseria mucosa ATCC
25996]
gi|288567035|gb|EFC88595.1| polyribonucleotide nucleotidyltransferase [Neisseria mucosa ATCC
25996]
Length = 706
Score = 157 bits (397), Expect = 1e-36, Method: Composition-based stats.
Identities = 46/242 (19%), Positives = 92/242 (38%), Gaps = 18/242 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +R +++ V GS L G+T L ATL +E++ +
Sbjct: 316 RIDGRDTRTVRPLNIQTGVLPRTHGSALFTRGETQALAVATLGTSRDEQIIDALSGEYTD 375
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P STG + A R+ G + RAL +V+ S + + +
Sbjct: 376 RFMLHYNFPPYSTGEVGRVGAPKRREIGHGRL----AKRALVAVLPSPEEFSYTMRVVSE 431
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ G ++L ++ + +L + A+ +
Sbjct: 432 ITESNGSSSMASVCGGCLSLLSAGVPLKAHVAGIAMGLILDNNKFAVLTD---------I 482
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T G + +Q + +++ L AKD +++ K
Sbjct: 483 LGDEDHLGDMDFKVAGTTEG-VTALQMDIKIQGITKEIMQIALAQAKDARLHILEQMKAA 541
Query: 238 IS 239
++
Sbjct: 542 VA 543
Score = 89.5 bits (220), Expect = 3e-16, Method: Composition-based stats.
Identities = 38/228 (16%), Positives = 76/228 (33%), Gaps = 27/228 (11%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGMLPR 68
++L +++ A + V GDT +L T ++E + + T G +P
Sbjct: 16 VTLETGEIARQAAAAVKVSMGDTVVLVAVTTNKEVKEGQDFFPLTVDYLERTYAAGKIPG 75
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
R G+Q + R+I R +R + QI+ + + +
Sbjct: 76 GFFKR------EGKQSEKEILTSRLIDRPIRPLFPEGFYHDIQIVAMVVSVDPEIDSDIP 129
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+ GA A G + A G + G +++ E + +D
Sbjct: 130 AMLGASTA-------------LVLSGVPFAGPIGAARVGYVNGVYVLNPTKAELAKSKLD 176
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
T ++ V+ A+ S+D + D++ I +
Sbjct: 177 LVVAGTSK-AVLMVESEAKI--LSEDVMLGAVVYGHDQMQVAINAINE 221
>gi|297530556|ref|YP_003671831.1| polyribonucleotide nucleotidyltransferase [Geobacillus sp. C56-T3]
gi|297253808|gb|ADI27254.1| polyribonucleotide nucleotidyltransferase [Geobacillus sp. C56-T3]
Length = 723
Score = 157 bits (397), Expect = 1e-36, Method: Composition-based stats.
Identities = 44/244 (18%), Positives = 85/244 (34%), Gaps = 18/244 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56
+R GR+ +++R +S V GS L G T +L+ T + ++ + +
Sbjct: 315 IRPDGRKVDEIRPLSSAVGVLPRTHGSGLFTRGQTQVLSVCTLGALGDVQILDGLDLEES 374
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P S G R+ G RAL VV I +
Sbjct: 375 KRFMHHYNFPPFSVGETGPMRGPGRREIGHGALG----ERALEPVVPSEREFPYTIRLVS 430
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V++++G T A+I + +A+ D ++ + V + D
Sbjct: 431 EVLESNGSTSQASICASTLAMMDAGVPIKAPVAGIAMGLVKNDD---------HYTILTD 481
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T G + +Q + +++ L A+ +++
Sbjct: 482 IQGIEDHLGDMDFKVAGTRKG-VTALQMDIKIKGLTREILEEALMQARKGRLEILDHMMQ 540
Query: 237 VISN 240
+S
Sbjct: 541 TLSE 544
Score = 111 bits (278), Expect = 7e-23, Method: Composition-based stats.
Identities = 42/230 (18%), Positives = 85/230 (36%), Gaps = 26/230 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEK---VPMWIRNTKHGWITAEYGMLP 67
R + + ++K A G+ LV++GDT +L+TAT + V + + G +P
Sbjct: 15 RPLIVETGELAKQANGAVLVRYGDTVVLSTATASREAKNVDFFPLTVNYEERLYAVGKIP 74
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R GR ++ + R+I R +R + Q++ + D
Sbjct: 75 GGFIKR------EGRPSEKAILVSRLIDRPIRPLFAEGFRNEVQVVSMVMSVDQDCAPEV 128
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
AA+ G+ VA +G +A + G + G +++ + D+
Sbjct: 129 AALIGSSVA-------------LTISDIPFEGPIAGVIVGRVDGQFVINPTVEQMEKSDL 175
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
T I V+ A+ ++ + + + LI Q+++
Sbjct: 176 HLVVAGTKD-AINMVEAGADEVP--EEVILEAIMFGHEEVKRLIAFQEEI 222
>gi|291613953|ref|YP_003524110.1| polyribonucleotide nucleotidyltransferase [Sideroxydans
lithotrophicus ES-1]
gi|291584065|gb|ADE11723.1| polyribonucleotide nucleotidyltransferase [Sideroxydans
lithotrophicus ES-1]
Length = 709
Score = 157 bits (397), Expect = 1e-36, Method: Composition-based stats.
Identities = 46/240 (19%), Positives = 89/240 (37%), Gaps = 18/240 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +R I++ V GS L G+T L ATL + + ++
Sbjct: 320 RIDGRDTRTVRPITIRTGVLPRTHGSVLFTRGETQALVVATLGSMRDSQTIDALQGEYSD 379
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P STG + R+ G + RAL +V+ I + +
Sbjct: 380 RFMLHYNFPPYSTGETGRVGTPKRREIGHGRL----AKRALVAVLPSEEECGYAIRVVSE 435
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ G ++L D ++ + + G A+ +
Sbjct: 436 ITESNGSSSMASVCGGCLSLMDAGVPVKTHVAGIAMGLIKDGGRFAVLTD---------I 486
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D +D G I +Q + +++ L+ AK+ ++ + K
Sbjct: 487 LGDEDHLGDMDFKVAGSDKG-ITALQMDIKINGITKEIMQVALSQAKEGRLHILGIMKQA 545
Score = 73.3 bits (178), Expect = 3e-11, Method: Composition-based stats.
Identities = 38/228 (16%), Positives = 73/228 (32%), Gaps = 27/228 (11%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT----KHGWITAEYGMLPR 68
++L +++ + G+ +V DT +L T + + T G +P
Sbjct: 20 LTLETGEIARQSSGAIMVSLDDTVVLVTVVGRKDAKPDQDFFPLTVDYQERTYAAGKIPG 79
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
R GR + R+I R LR + S QI+ +
Sbjct: 80 GFFKR------EGRPSEKEILTSRLIDRPLRPLFPESFYNEVQIVATVMSSDPQIDSDIP 133
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+ GA A G + A G L G +++ E +D
Sbjct: 134 AMIGASAA-------------LAISGIPFDGPIGAARVGYLNGQYVLNPTKDELVESKMD 180
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
T + ++ V+ A+ S+D + +++ +I +
Sbjct: 181 LVVAGT-AKAVLMVESEAQE--LSEDVMLGAVVFGHEQMQAVINAINE 225
>gi|56419804|ref|YP_147122.1| polynucleotide phosphorylase/polyadenylase [Geobacillus
kaustophilus HTA426]
gi|81347597|sp|Q5L0I2|PNP_GEOKA RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|56379646|dbj|BAD75554.1| polyribonucleotide nucleotidyltransferase (polynucleotide
phosphorylase) [Geobacillus kaustophilus HTA426]
Length = 723
Score = 157 bits (397), Expect = 1e-36, Method: Composition-based stats.
Identities = 44/244 (18%), Positives = 85/244 (34%), Gaps = 18/244 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56
+R GR+ +++R +S V GS L G T +L+ T + ++ + +
Sbjct: 315 IRPDGRKVDEIRPLSSAVGVLPRTHGSGLFTRGQTQVLSVCTLGALGDVQILDGLDLEES 374
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P S G R+ G RAL VV I +
Sbjct: 375 KRFMHHYNFPPFSVGETGPMRGPGRREIGHGALG----ERALEPVVPSEREFPYTIRLVS 430
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V++++G T A+I + +A+ D ++ + V + D
Sbjct: 431 EVLESNGSTSQASICASTLAMMDAGVPIKAPVAGIAMGLVKNDD---------HYTILTD 481
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T G + +Q + +++ L A+ +++
Sbjct: 482 IQGIEDHLGDMDFKVAGTRKG-VTALQMDIKIKGLTREILEEALMQARKGRLEILDHMMQ 540
Query: 237 VISN 240
+S
Sbjct: 541 TLSE 544
Score = 113 bits (281), Expect = 3e-23, Method: Composition-based stats.
Identities = 42/230 (18%), Positives = 85/230 (36%), Gaps = 26/230 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEK---VPMWIRNTKHGWITAEYGMLP 67
R + + ++K A G+ LV++GDT +L+TAT + V + + G +P
Sbjct: 15 RPLIIETGELAKQANGAALVRYGDTVVLSTATASREAKNVDFFPLTVNYEERLYAVGKIP 74
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R GR ++ + R+I R +R + Q++ + D
Sbjct: 75 GGFIKR------EGRPSEKAILVSRLIDRPIRPLFAEGFRNEVQVVSMVMSVDQDCAPEV 128
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
AA+ G+ VA +G +A + G + G +++ + D+
Sbjct: 129 AALIGSSVA-------------LTISDIPFEGPIAGVIVGRVDGQFVINPTVEQMEKSDL 175
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
T I V+ A+ ++ + + + LI Q+++
Sbjct: 176 HLVVAGTKD-AINMVEAGADEVP--EEVILEAIMFGHEEVKRLIAFQEEI 222
>gi|115522221|ref|YP_779132.1| polynucleotide phosphorylase/polyadenylase [Rhodopseudomonas
palustris BisA53]
gi|122298071|sp|Q07V82|PNP_RHOP5 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|115516168|gb|ABJ04152.1| Polyribonucleotide nucleotidyltransferase [Rhodopseudomonas
palustris BisA53]
Length = 721
Score = 157 bits (397), Expect = 1e-36, Method: Composition-based stats.
Identities = 51/243 (20%), Positives = 92/243 (37%), Gaps = 18/243 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +R+I V A GS L G+T L TL +E+ + T
Sbjct: 316 RIDGRDSTTVRQIIAEVGVLPRAHGSALFTRGETQALVVTTLGTGEDEQYIDSLSGTYKE 375
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + R+ G + RAL V+ + + +
Sbjct: 376 QFLLHYNFPPFSVGETGRMGGTKRREIGHGKL----AWRALHPVLPPHHEFPYTLRVVSE 431
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ GA +AL D ++ + + +L+G A+ +
Sbjct: 432 ITESNGSSSMASVCGASLALMDAGVPLKRPTAGIAMGLILEGERFAVLSD---------I 482
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D TD G I +Q + A +++ L AK+ ++
Sbjct: 483 LGDEDHLGDMDFKVAGTDHG-ITSLQMDIKIAGITEEIMKVALGQAKEGRIHILGEMSKA 541
Query: 238 ISN 240
++N
Sbjct: 542 LTN 544
Score = 109 bits (273), Expect = 3e-22, Method: Composition-based stats.
Identities = 35/235 (14%), Positives = 76/235 (32%), Gaps = 28/235 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTKHGWITAEYGML 66
R + L +++ A+G+ + +G+T +L T T E V + T G +
Sbjct: 14 RPLKLETGKIARQADGAVVATYGETVVLATVVAAKTPREGVDFLPLTVDYIEKTYAAGRI 73
Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
P R GR + + R+I R +R + Q+I+ +
Sbjct: 74 PGGYFKR------EGRPTEKETLVSRLIDRPIRPLFVDGWRNETQVIVTVLSHDMENDPD 127
Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
A+ A KG + A G + +++ E
Sbjct: 128 ILALVATSAA-------------LTLSGAPFKGPIGAARVGFINDEYVLNPVLDEMIETQ 174
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
+D T ++ V+ A+ ++D + +++ + ++ +
Sbjct: 175 LDLVVAGTAD-AVLMVESEAKE--LNEDIMLGAVMFGHRHFQPVVQAIIE-LAEK 225
>gi|157964552|ref|YP_001499376.1| polynucleotide phosphorylase/polyadenylase [Rickettsia massiliae
MTU5]
gi|187611281|sp|A8F1P3|PNP_RICM5 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|157844328|gb|ABV84829.1| Polyribonucleotide nucleotidyltransferase [Rickettsia massiliae
MTU5]
Length = 745
Score = 157 bits (397), Expect = 1e-36, Method: Composition-based stats.
Identities = 45/243 (18%), Positives = 86/243 (35%), Gaps = 18/243 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHG 57
R+ GR +R+I+ + A GS L G+T L + T L+E++ +
Sbjct: 316 RIDGRSTTDIRQIACEIGLLPSAHGSALFTRGETQSLVSTTFGTSLDEQIVDSLEGEYKE 375
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S + + S R+ G + RA+ ++ I + +
Sbjct: 376 RFMLNYIFPPYSVNEAMPMKVPSRREVGHGKL----AWRAINPILPNKVQFPYSIRVVAE 431
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+++G + A + G+ +AL ++ + V +G A+ +
Sbjct: 432 TTESNGSSSMATVCGSSLALMYAGVPIKAPVAGIAMGLVKEGKKFAVLSD---------I 482
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T G I +Q + + L A+ +++ V
Sbjct: 483 LGDEDYFGDMDFKVAGTSEG-ITALQMDIKISGVDFKIMKVALEQARLGRLHILEQMNKV 541
Query: 238 ISN 240
IS
Sbjct: 542 ISK 544
Score = 97.2 bits (240), Expect = 2e-18, Method: Composition-based stats.
Identities = 39/233 (16%), Positives = 82/233 (35%), Gaps = 28/233 (12%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKHGWITAEYGMLPR 68
+ L+ +++ A+G+ VK G++ LL T + E + + + + G +P
Sbjct: 16 LELSTGKIARQADGAVTVKMGNSVLLCTVVVANKAKEGIGFFPLTINYREMAYAAGKIPG 75
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
R G+ R + R+I R +R + + + + +
Sbjct: 76 GFFKR------EGKASDREVLVSRLIDRPIRPLFHPAFVNETHVTCSVLSYDPEIPVDIL 129
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
AI GA A VAA G++ G +++ T +D
Sbjct: 130 AIIGASAA-------------LSLSPAPYLEMVAASKVGLINGEFVLNPTLELLKTSQLD 176
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
T ++ V+ +E S++ + + +IK+ K+ ++ E
Sbjct: 177 LVVAGTSD-SVMMVE--SEAHLLSEEQMLEAVKFGFESFQPVIKIIKE-LAEE 225
>gi|220922849|ref|YP_002498151.1| polynucleotide phosphorylase/polyadenylase [Methylobacterium
nodulans ORS 2060]
gi|254782728|sp|B8IGX3|PNP_METNO RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|219947456|gb|ACL57848.1| 3' exoribonuclease [Methylobacterium nodulans ORS 2060]
Length = 725
Score = 157 bits (397), Expect = 1e-36, Method: Composition-based stats.
Identities = 49/241 (20%), Positives = 90/241 (37%), Gaps = 18/241 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +R I V A GS L G+T L ATL +E+ + T
Sbjct: 316 RIDGRDVRTVRPILSEVGVLPRAHGSALFTRGETQALVVATLGTGDDEQFIDALEGTYKE 375
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + + R+ G + RA+ ++ + I + +
Sbjct: 376 TFLLHYNFPPYSVGETGRMGSPGRREIGHGKL----AWRAVHPLLPAAHEFPYTIRVVSE 431
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A + G+ +AL D + + +L+G A+ +
Sbjct: 432 ITESNGSSSMATVCGSSLALMDAGVPLRRPVAGIAMGLILEGERFAVLSD---------I 482
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T G + +Q + A +++ L+ AKD A ++
Sbjct: 483 LGDEDHLGDMDFKVAGTSEG-VTSLQMDIKIAGITEEIMRVALDQAKDGRAHILGEMAKA 541
Query: 238 I 238
+
Sbjct: 542 L 542
Score = 100 bits (248), Expect = 2e-19, Method: Composition-based stats.
Identities = 32/228 (14%), Positives = 72/228 (31%), Gaps = 27/228 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRN----TKHGWITAEYGML 66
R++ L V++ A+G+ + +G+T +L T ++ I + G +
Sbjct: 14 RKLVLETGKVARQADGAVVASYGETTVLATVVSLKEPKPGIDFLPLTVNYQERAYAAGRI 73
Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
P R GR + + R+I R +R + Q+++ +
Sbjct: 74 PGGYFKR------EGRPSEKETLVSRLIDRPIRPLFVEGWRNDTQVVVTVLSHDLENDPD 127
Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
++ A A G + A G + ++ E
Sbjct: 128 IVSMVAASAA-------------LTLSGVPFMGPIGAARVGYVGNQYKLNPTIQEMEGSS 174
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
+D T++ ++ V+ A+ +D + +I+
Sbjct: 175 LDLVVAGTEA-AVLMVESEAKE--LPEDVMLGAVMFGHKHFQPVIEAI 219
>gi|116249886|ref|YP_765724.1| polynucleotide phosphorylase/polyadenylase [Rhizobium leguminosarum
bv. viciae 3841]
gi|123385010|sp|Q1MN44|PNP_RHIL3 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|115254534|emb|CAK05608.1| putative Polynribonucleotide nucleotidyltransferase (Polynucleotide
phosphorylase) (PNPase) [Rhizobium leguminosarum bv.
viciae 3841]
Length = 712
Score = 157 bits (397), Expect = 1e-36, Method: Composition-based stats.
Identities = 43/243 (17%), Positives = 84/243 (34%), Gaps = 18/243 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +R I + GS L G+T + ATL +E+ +
Sbjct: 316 RIDGRNLETVRPIVSEVGLLPRTHGSALFTRGETQAIVVATLGTGEDEQYVDSLTGMYKE 375
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + + R+ G + RA+R ++ + + +
Sbjct: 376 RFLLHYNFPPYSVGETGRMGSPGRREIGHGKL----AWRAIRPMLPTPEQFPYTLRVVSE 431
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A + G +AL D + + +L+G A+ +
Sbjct: 432 ITESNGSSSMATVCGTSLALMDAGVPLAKPVAGIAMGLILEGDRFAVLSD---------I 482
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T G I +Q + +++ L A+ ++
Sbjct: 483 LGDEDHLGDMDFKVAGTADG-ITSLQMDIKITGITEEIMKVALGQAQGGRVHILGEMSKA 541
Query: 238 ISN 240
I+
Sbjct: 542 ITE 544
Score = 110 bits (275), Expect = 2e-22, Method: Composition-based stats.
Identities = 31/228 (13%), Positives = 69/228 (30%), Gaps = 27/228 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEE----KVPMWIRNTKHGWITAEYGML 66
R + L +++ A+G+ L +G+T +L T + + + T G +
Sbjct: 14 RPLKLETGKIARQADGAVLATYGETVVLATVVSAKAPKAGQDFFPLTVNYQEKTYAAGKI 73
Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
P R GR + + R+I R +R + Q+++ +
Sbjct: 74 PGGYFKR------EGRPSEKETLVSRLIDRPIRPLFPEGYKNDTQVVVTVIQHDLENDPD 127
Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
++ A G V G + G +++ E
Sbjct: 128 VLSMVATSAA-------------LTLSGVPFMGPVGGARVGYINGEYVLNPHLDEMDESS 174
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
+D T ++ V+ A+ ++D + ++
Sbjct: 175 LDLVVAGTYD-AVLMVESEAKE--LNEDVMLGAVMFGHKGFQPVLDAI 219
>gi|86139387|ref|ZP_01057956.1| polyribonucleotide nucleotidyltransferase [Roseobacter sp. MED193]
gi|85823890|gb|EAQ44096.1| polyribonucleotide nucleotidyltransferase [Roseobacter sp. MED193]
Length = 702
Score = 157 bits (397), Expect = 1e-36, Method: Composition-based stats.
Identities = 44/242 (18%), Positives = 91/242 (37%), Gaps = 17/242 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +++R+I + GS L G+T L TL +E+ +
Sbjct: 310 RIDGRATDEIRDIVSETGMLPRTHGSALFTRGETQGLVVTTLGTGDDEQFIDALHGNFKS 369
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + R+ G + RAL++V+ + I + +
Sbjct: 370 NFLLHYNFPPYSVGEVGRVGGPGRREIGHGKL----AWRALQAVLPAATDFPYTIRVVSE 425
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ G +++ D ++ + +L+ + + D+
Sbjct: 426 ITESNGSSSMASVCGGSLSMMDAGVPLKAPVAGVAMGLILEDDGS--------YAILSDI 477
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T++G I +Q + A + + L AK ++
Sbjct: 478 LGDEDHLGDMDFKVAGTEAG-ITSLQMDIKIAGITPEIMEKALEQAKAGRIHILGEMNKA 536
Query: 238 IS 239
+S
Sbjct: 537 LS 538
Score = 104 bits (259), Expect = 1e-20, Method: Composition-based stats.
Identities = 33/228 (14%), Positives = 61/228 (26%), Gaps = 25/228 (10%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGN 72
++L V++ A+GS + G+T ++ T K E
Sbjct: 8 LTLETGKVARQADGSVIATLGETSVMANVTFARKQKPGQDFFPLTVHYQEKYYAAGKVP- 66
Query: 73 RVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITG 132
R + R+I R +R + ++ A+
Sbjct: 67 -GGFFKREARPTEKETLTARLIDRPIRPLFVPGFKNEVLVMCTVLSHDLVNDPDMVAMIA 125
Query: 133 AWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDST------ID 186
A A G +AA G G +++ +
Sbjct: 126 ASAA-------------LTLSGAPFMGPIAAARVGFEGGEYVLNPTVDDMQDLRLNPEQR 172
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
+D T ++ V+ A S+ + A D I +I L
Sbjct: 173 LDLVVAGTKD-AVMMVESEAYE--LSEAEMLGAVKFAHDAIQPVIDLI 217
>gi|282900962|ref|ZP_06308895.1| Ribonuclease PH [Cylindrospermopsis raciborskii CS-505]
gi|281194053|gb|EFA69017.1| Ribonuclease PH [Cylindrospermopsis raciborskii CS-505]
Length = 246
Score = 157 bits (397), Expect = 1e-36, Method: Composition-based stats.
Identities = 92/237 (38%), Positives = 146/237 (61%), Gaps = 4/237 (1%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
RL GRQ +Q+R ++ +++A GS L + G+T +L T ++ E VP ++ + GW+TA
Sbjct: 5 RLDGRQPDQLRTLNFYPHFTRFAPGSVLAQCGETQVLCTVSITEGVPKFLMGSGKGWLTA 64
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
EY MLP +T R +E + GR+QEIQR+IGR+LR+ ++ LG + + +D DV+QA
Sbjct: 65 EYRMLPSATQQR--QERELLKLSGRTQEIQRLIGRSLRAALNFEILGEKTLTVDADVLQA 122
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
D GTRT +ITG ++AL + H+ + + +AA+S G+L G +DLD+ E
Sbjct: 123 DAGTRTISITGGFIALAHAITHLLQQGVLERSPLCGQ--IAAVSVGLLKGEAFLDLDFTE 180
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
D +VD N VM +I+EVQG+AE +FS+ +L++A+ I +L+ Q+ VI
Sbjct: 181 DVNAEVDFNVVMNSKLNIIEVQGTAEAGSFSRQQLNQLLDVAETGIRELLIAQRSVI 237
>gi|255066227|ref|ZP_05318082.1| polyribonucleotide nucleotidyltransferase [Neisseria sicca ATCC
29256]
gi|255049437|gb|EET44901.1| polyribonucleotide nucleotidyltransferase [Neisseria sicca ATCC
29256]
Length = 706
Score = 157 bits (397), Expect = 1e-36, Method: Composition-based stats.
Identities = 46/242 (19%), Positives = 92/242 (38%), Gaps = 18/242 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +R +++ V GS L G+T L ATL +E++ +
Sbjct: 316 RIDGRDTRTVRPLNIQTGVLPRTHGSALFTRGETQALAVATLGTSRDEQIIDALSGEYTD 375
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P STG + A R+ G + RAL +V+ S + + +
Sbjct: 376 RFMLHYNFPPYSTGEVGRVGAPKRREIGHGRL----AKRALVAVLPSPEEFSYTMRVVSE 431
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ G ++L ++ + +L + A+ +
Sbjct: 432 ITESNGSSSMASVCGGCLSLLSAGVPLKAHVAGIAMGLILDNNKFAVLTD---------I 482
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T G + +Q + +++ L AKD +++ K
Sbjct: 483 LGDEDHLGDMDFKVAGTTEG-VTALQMDIKIQGITKEIMQIALAQAKDARLHILEQMKAA 541
Query: 238 IS 239
++
Sbjct: 542 VA 543
Score = 88.4 bits (217), Expect = 8e-16, Method: Composition-based stats.
Identities = 37/228 (16%), Positives = 75/228 (32%), Gaps = 27/228 (11%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGMLPR 68
++L +++ A + V GDT +L T ++E + + T G +P
Sbjct: 16 VTLETGEIARQAAAAVKVSMGDTVVLVAVTTNKEVKEGQDFFPLTVDYLERTYAAGKIPG 75
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
R G+Q + R+I R +R + QI+ + + +
Sbjct: 76 GFFKR------EGKQSEKEILTSRLIDRPIRPLFPEGFYHDIQIVAMVVSVDPEIDSDIP 129
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+ GA A G + A G + G +++ E + +D
Sbjct: 130 AMLGASAA-------------LVLSGVPFAGPIGAARVGYVNGVYVLNPTKAELAKSKLD 176
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
T ++ V+ A+ +D + D++ I +
Sbjct: 177 LVVAGTSK-AVLMVESEAKI--LPEDVMLGAVVYGHDQMQVAINAINE 221
>gi|269123373|ref|YP_003305950.1| ribonuclease PH [Streptobacillus moniliformis DSM 12112]
gi|268314699|gb|ACZ01073.1| ribonuclease PH [Streptobacillus moniliformis DSM 12112]
Length = 231
Score = 157 bits (397), Expect = 1e-36, Method: Composition-based stats.
Identities = 106/233 (45%), Positives = 149/233 (63%), Gaps = 2/233 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR + R+ N++REI +TR KY EGS L++FG+T ++ T+EEKVP +++N GW+T
Sbjct: 1 MRTNNRKNNELREIKITREYIKYPEGSVLIEFGNTKVICNVTVEEKVPPFLKNLGQGWVT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEY MLPR+T R KREA G+ GR+ EIQR+IGR+LR+ +DL LG R +I+DCDVIQ
Sbjct: 61 AEYSMLPRATNTRNKREASQGKLSGRTMEIQRLIGRSLRAALDLKKLGERTLIVDCDVIQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+ITG ++A+ + + + ++ VAAIS G + +DL++
Sbjct: 121 ADGGTRTASITGGYLAMEIAINKLI--LSGLLNENPIRAKVAAISVGKVNNELFLDLEFY 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
EDS DVD N VM G +E+QG+ E TF++ + LA L KL
Sbjct: 179 EDSHADVDMNIVMNSKGEFIEIQGTGEDTTFTKQELDKFIELASLGFEKLFKL 231
>gi|307718799|ref|YP_003874331.1| polyribonucleotide nucleotidyltransferase [Spirochaeta thermophila
DSM 6192]
gi|306532524|gb|ADN02058.1| polyribonucleotide nucleotidyltransferase [Spirochaeta thermophila
DSM 6192]
Length = 709
Score = 157 bits (397), Expect = 1e-36, Method: Composition-based stats.
Identities = 45/244 (18%), Positives = 82/244 (33%), Gaps = 19/244 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
+R GR +R I+ V GS L G+T L TL +E++ + K
Sbjct: 311 IRTDGRGPEDIRPITCEIGVLPRTHGSALFTRGETQALAITTLGTVFDEQIMDDLEGDKR 370
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P S G + R+ G RAL +V+ + +
Sbjct: 371 ENFMLHYNFPPFSVGEVGRLYTGR-REIGHGHL----AHRALEAVLPSKDDFPYTLRVVS 425
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
++++++G + A + G+ ++L + ++ + V G I
Sbjct: 426 EILESNGSSSMATVCGSTLSLLNAGVPIKKPVAGIAMGLVTDGERTVILSD--------- 476
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T+ G I Q + L A+ ++ +
Sbjct: 477 ILGEEDHFGDMDFKVAGTEDG-ITAFQMDIKIKNIDPATMRKALEQARRGRLHILGIMNQ 535
Query: 237 VISN 240
IS
Sbjct: 536 AISE 539
Score = 96.1 bits (237), Expect = 4e-18, Method: Composition-based stats.
Identities = 44/230 (19%), Positives = 82/230 (35%), Gaps = 27/230 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT----KHGWITAEYGML 66
RE+ LT +++ A G+ ++G T +L TA V + + G +
Sbjct: 12 RELVLTTGKMARQANGAVFAQYGGTCVLATACCGSDVKEDLDFIPLSVDYNEKYYAAGKI 71
Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
P R GR + + R+I R +R + + QII
Sbjct: 72 PGGFFKR------EGRPREKEILVSRLIDRPMRPLFSKAFKREIQIIPT----------- 114
Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
++ + D + + + G V A+ G++ G +++ +
Sbjct: 115 --TVSADQINTPDVVAIVAASAAVTVSDIPFDGPVGAVRVGLVDGTFVINPTLEQLEASA 172
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+D T G I V+G A+ S+D + +A+ I L K Q +
Sbjct: 173 LDIVVAGTLEG-ITMVEGGAKE--VSEDTLVEAIEIARGAIVSLCKAQLE 219
>gi|126664893|ref|ZP_01735877.1| polynucleotide phosphorylase/polyadenylase [Marinobacter sp. ELB17]
gi|126631219|gb|EBA01833.1| polynucleotide phosphorylase/polyadenylase [Marinobacter sp. ELB17]
Length = 706
Score = 157 bits (397), Expect = 1e-36, Method: Composition-based stats.
Identities = 46/242 (19%), Positives = 84/242 (34%), Gaps = 18/242 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +R I + + A GS L G+T + T TL + ++ +
Sbjct: 318 RIDGRDTKTVRPIKIEVGILPGAHGSALFTRGETQAIVTTTLGTSRDMQIIDALEGESKD 377
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + R+ G + R L +V+ I +
Sbjct: 378 PFLFHYNFPPYSVGEAGRMMGPGRREIGHGRL----AKRGLLAVMPTVEEFPYTIRAVSE 433
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ G+ +AL D ++ + V +G AI +
Sbjct: 434 ITESNGSSSMASVCGSSLALMDAGVPIKSAVAGIAMGLVKEGDKFAILTD---------I 484
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T G I +Q + + + L A ++ V
Sbjct: 485 LGDEDHLGDMDFKVAGTKEG-ITALQMDIKINGITDEIMELALEQAYGARQHILGEMNKV 543
Query: 238 IS 239
I+
Sbjct: 544 IA 545
Score = 87.2 bits (214), Expect = 2e-15, Method: Composition-based stats.
Identities = 36/229 (15%), Positives = 75/229 (32%), Gaps = 28/229 (12%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPM----WIRNTKHGWITAEYGMLPR 68
++L +++ A G+ LV D +L T ++ + + T G +P
Sbjct: 17 VTLETGRIARQATGAVLVTIDDISVLGTVVGAKEAKPGQGFFPLTVNYTEKTYSVGKIPG 76
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
R R + R+I R +R + + Q+++ A
Sbjct: 77 GFFKR------EARPTEKETLTSRLIDRPIRPLFPNGFMNEVQVVLTVMSANKTQDPDIA 130
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY-PIVDLDYGEDSTIDV 187
A+ A AL +G + A G ++ + E ST +
Sbjct: 131 AMLAASAALAISGI-------------PFEGPIGASRVGFTNERGYFLNPTHEERSTSLL 177
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
D T+ ++ V+ A+ + ++D + A + + K+
Sbjct: 178 DMIVAGTED-AVLMVESQAQ--SLTEDQMLGAVLFAHQEMQTAVSGIKE 223
>gi|146297069|ref|YP_001180840.1| polynucleotide phosphorylase/polyadenylase [Caldicellulosiruptor
saccharolyticus DSM 8903]
gi|187470950|sp|A4XL64|PNP_CALS8 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|145410645|gb|ABP67649.1| Polyribonucleotide nucleotidyltransferase [Caldicellulosiruptor
saccharolyticus DSM 8903]
Length = 701
Score = 157 bits (397), Expect = 1e-36, Method: Composition-based stats.
Identities = 50/241 (20%), Positives = 89/241 (36%), Gaps = 17/241 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHG 57
R GR+ +++R + + GS L K G T +LT AT E + + +
Sbjct: 313 RPDGRKFDEIRPLYAEVGILPRTHGSALFKRGYTQVLTVATLGTKGEMQFLDGLEEEEAK 372
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P STG R+ G RAL V+ I + +
Sbjct: 373 RYMHHYNFPPYSTGESKPVRGPGRREIGHGAL----AERALEPVIPSEDEFPYTIRLVSE 428
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
V+ ++G T A++ G+ +AL D ++ + + K + I+ D+
Sbjct: 429 VLTSNGSTSQASVCGSTLALMDAGVPIKAPVAGISIGLITKEDGSFITLT--------DI 480
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T G I +Q + +++ L A++ ++ + V
Sbjct: 481 QGIEDFFGDMDFKVAGTREG-ITAIQLDIKIHGLTKEIIEKALYQAREARLKILDFMQTV 539
Query: 238 I 238
I
Sbjct: 540 I 540
Score = 106 bits (264), Expect = 3e-21, Method: Composition-based stats.
Identities = 37/234 (15%), Positives = 79/234 (33%), Gaps = 27/234 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVP----MWIRNTKHGWITAEYGML 66
RE+S + A G+ L ++GDT +L TA EK + + G +
Sbjct: 13 RELSFEIGKYALLANGAVLARYGDTAVLVTACASEKPREGINFFPLTVDYEERLYSVGKI 72
Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
P R G+ ++ R+I R +R + +I + D
Sbjct: 73 PGGFIKR------EGKPSEKAILSARLIDRPIRPLFPKDFYHDVSVIATVLSVDPDNPPD 126
Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
A+ G+ VA +G ++ G + G +++ E
Sbjct: 127 VLAMLGSSVA-------------LSISDIPFEGPTGSVLVGYVDGKIVINPTAKEREVSK 173
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
+ T ++ ++ A+ +D + A++ I +++ + ++
Sbjct: 174 LHLVVSGTKD-KVMMIEAGAQE--IPEDIMLEAIMTAQEEIKKIVEFIEGIVKE 224
>gi|305431698|ref|ZP_07400867.1| polyribonucleotide nucleotidyltransferase [Campylobacter coli JV20]
gi|304445293|gb|EFM37937.1| polyribonucleotide nucleotidyltransferase [Campylobacter coli JV20]
Length = 738
Score = 157 bits (397), Expect = 1e-36, Method: Composition-based stats.
Identities = 48/247 (19%), Positives = 86/247 (34%), Gaps = 22/247 (8%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWI------RNTK 55
R GR N++R I++ + A GSCL G T L ATL + + +N
Sbjct: 355 RADGRNLNEVRPIAIETNILPNAHGSCLFTRGQTQALVVATLGSENDAQMVDVLTEKNPI 414
Query: 56 HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115
+ Y S G +A R+ G RAL + I +
Sbjct: 415 NERFMVNYNFPGFSVGEASPIKAPGRRELGHGNL----AKRALYPSI--DENYPYIIRLV 468
Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIV 175
++++++G + A + G +AL + + +G AI ++
Sbjct: 469 SEILESNGSSSMATVCGGSLALRAAGVPSLKLVAGVAMGLIFEGDQYAILTDIM------ 522
Query: 176 DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
ED D+D + G I +Q + Q L AK+ ++ + +
Sbjct: 523 ---GLEDHDGDMDFKVAGSKDG-ITALQMDIKLGGIDQKILKEALYQAKEGRIHILNIME 578
Query: 236 DVISNEV 242
+ + V
Sbjct: 579 EALKEIV 585
Score = 78.7 bits (192), Expect = 6e-13, Method: Composition-based stats.
Identities = 36/246 (14%), Positives = 73/246 (29%), Gaps = 48/246 (19%)
Query: 20 VSKYAEGSCLVKFGDTHLLTTATLEEKV---PMWIRNTKHGWITAEYGMLPRSTGNRVKR 76
V+K A G+ L++ G + +L EEK ++ G +P R
Sbjct: 38 VAKQAAGAVLMRQGKSVVLAAVAREEKPVEEDFLPLTVQYIEKAYAAGKIPGGYVKR--- 94
Query: 77 EAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVA 136
+ R+I R+LR + QI++ + ++ A VA
Sbjct: 95 ---ETKPSDAETLTARIIDRSLRPLFPKGYAYPTQIVVMVLSADPQVDLQVMSLNAASVA 151
Query: 137 LHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDS 196
L+ +K V + G + +++ + E +D
Sbjct: 152 LY-------------LSDIPMKAPVCGVRIGRIEEKFVLNPNNEELKNSTLDLYVAGVKD 198
Query: 197 GHIVEVQGSA-------------------------ERATFSQDHFFAMLNLAKDRIADLI 231
++ ++ A S+D L+LA+ I +
Sbjct: 199 -ELLMIEMRALPNQKEDEIFIEVPYADVLTQTTSQSMNELSEDEILEALSLAQKAILNGS 257
Query: 232 KLQKDV 237
++
Sbjct: 258 NAYEEA 263
>gi|57168155|ref|ZP_00367294.1| polyribonucleotide nucleotidyltransferase Cj1253 [Campylobacter
coli RM2228]
gi|57020529|gb|EAL57198.1| polyribonucleotide nucleotidyltransferase Cj1253 [Campylobacter
coli RM2228]
Length = 719
Score = 157 bits (397), Expect = 1e-36, Method: Composition-based stats.
Identities = 48/247 (19%), Positives = 86/247 (34%), Gaps = 22/247 (8%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWI------RNTK 55
R GR N++R I++ + A GSCL G T L ATL + + +N
Sbjct: 336 RADGRNLNEVRPIAIETNILPNAHGSCLFTRGQTQALVVATLGSENDAQMVDVLTEKNPI 395
Query: 56 HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115
+ Y S G +A R+ G RAL + I +
Sbjct: 396 NERFMVNYNFPGFSVGEASPIKAPGRRELGHGNL----AKRALYPSI--DENYPYIIRLV 449
Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIV 175
++++++G + A + G +AL + + +G AI ++
Sbjct: 450 SEILESNGSSSMATVCGGSLALRAAGVPSLKLVAGVAMGLIFEGDQYAILTDIM------ 503
Query: 176 DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
ED D+D + G I +Q + Q L AK+ ++ + +
Sbjct: 504 ---GLEDHDGDMDFKVAGSKDG-ITALQMDIKLGGIDQKILKEALYQAKEGRIHILNIME 559
Query: 236 DVISNEV 242
+ + V
Sbjct: 560 EALKEIV 566
Score = 78.7 bits (192), Expect = 6e-13, Method: Composition-based stats.
Identities = 36/246 (14%), Positives = 73/246 (29%), Gaps = 48/246 (19%)
Query: 20 VSKYAEGSCLVKFGDTHLLTTATLEEKV---PMWIRNTKHGWITAEYGMLPRSTGNRVKR 76
V+K A G+ L++ G + +L EEK ++ G +P R
Sbjct: 19 VAKQAAGAVLMRQGKSVVLAAVAREEKPVEEDFLPLTVQYIEKAYAAGKIPGGYVKR--- 75
Query: 77 EAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVA 136
+ R+I R+LR + QI++ + ++ A VA
Sbjct: 76 ---ETKPSDAETLTARIIDRSLRPLFPKGYAYPTQIVVMVLSADPQVDLQVMSLNAASVA 132
Query: 137 LHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDS 196
L+ +K V + G + +++ + E +D
Sbjct: 133 LY-------------LSDIPMKAPVCGVRIGRIEEKFVLNPNNEELKNSTLDLYVAGVKD 179
Query: 197 GHIVEVQGSA-------------------------ERATFSQDHFFAMLNLAKDRIADLI 231
++ ++ A S+D L+LA+ I +
Sbjct: 180 -ELLMIEMRALPNQKEDEIFIEVPYADVLTQTTSQSMNELSEDEILEALSLAQKAILNGS 238
Query: 232 KLQKDV 237
++
Sbjct: 239 NAYEEA 244
>gi|312127889|ref|YP_003992763.1| polyribonucleotide nucleotidyltransferase [Caldicellulosiruptor
hydrothermalis 108]
gi|311777908|gb|ADQ07394.1| polyribonucleotide nucleotidyltransferase [Caldicellulosiruptor
hydrothermalis 108]
Length = 701
Score = 157 bits (397), Expect = 1e-36, Method: Composition-based stats.
Identities = 50/241 (20%), Positives = 89/241 (36%), Gaps = 17/241 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHG 57
R GR+ +++R + + GS L K G T +LT AT E + + +
Sbjct: 313 RPDGRKFDEIRPLYAEVGILPRTHGSALFKRGYTQVLTVATLGTKGEMQFLDGLEEEEAK 372
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P STG R+ G RAL V+ I + +
Sbjct: 373 RYMHHYNFPPFSTGESKPVRGPGRREIGHGAL----AERALEPVIPSEDEFPYTIRLVSE 428
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
V+ ++G T A++ G+ +AL D ++ + + K + I + D+
Sbjct: 429 VLTSNGSTSQASVCGSTLALMDAGVPIKAPVAGISIGLITKDDGSFI--------LLTDI 480
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T G I +Q + +++ L A++ ++ + V
Sbjct: 481 QGIEDFFGDMDFKVAGTREG-ITAIQLDIKIHGLTREIIEKALYQAREARLKILDFMQTV 539
Query: 238 I 238
I
Sbjct: 540 I 540
Score = 105 bits (261), Expect = 6e-21, Method: Composition-based stats.
Identities = 37/234 (15%), Positives = 79/234 (33%), Gaps = 27/234 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVP----MWIRNTKHGWITAEYGML 66
RE+S + A G+ L ++GDT +L TA EK + + G +
Sbjct: 13 RELSFEIGKYALLANGAVLARYGDTAVLVTACASEKPRKGINFFPLTVDYEERLYSVGKI 72
Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
P R G+ ++ R+I R +R + +I + D
Sbjct: 73 PGGFIKR------EGKPSEKAILSARLIDRPIRPLFPKDFYHDVSVIATVLSVDPDNPPD 126
Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
A+ G+ VA +G ++ G + G +++ E
Sbjct: 127 VLAMLGSSVA-------------LSISDIPFEGPTGSVLVGYVDGKIVINPTAKEREVSK 173
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
+ T ++ ++ A+ +D + A++ I +++ + ++
Sbjct: 174 LHLVVSGTKD-RVMMIEAGAKEVP--EDIMLEAIMTAQEEIKKIVEFIEGIVRE 224
>gi|299823025|ref|ZP_07054911.1| polyribonucleotide nucleotidyltransferase [Listeria grayi DSM
20601]
gi|299816554|gb|EFI83792.1| polyribonucleotide nucleotidyltransferase [Listeria grayi DSM
20601]
Length = 722
Score = 157 bits (397), Expect = 1e-36, Method: Composition-based stats.
Identities = 50/243 (20%), Positives = 90/243 (37%), Gaps = 18/243 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
+R GR+ N++R +S + GS L G T L+ TL E ++ + ++
Sbjct: 317 IRPDGRKVNEIRPLSSETGLLPRVHGSGLFTRGQTQALSICTLAPLREHQIIDGLGTEEY 376
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y S G R A R+ G RAL+ V+ I +
Sbjct: 377 KRFMHHYNFPQFSVGETGPRRAPGRREIGHGALG----ERALQYVIPSEEEFPYTIRLVS 432
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V++++G + A+I G+ +A+ D ++ + V G + D
Sbjct: 433 EVLESNGSSSQASICGSTLAMMDAGVPIKAPVAGIAMGLVKLGDD---------YTILTD 483
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T G I +Q + S+ L AK+ +++
Sbjct: 484 IQGMEDHFGDMDFKVAGTKDG-ITALQMDIKIDGLSRQILHEALEQAKEGRLHILEHLNA 542
Query: 237 VIS 239
I+
Sbjct: 543 TIA 545
Score = 112 bits (279), Expect = 5e-23, Method: Composition-based stats.
Identities = 44/230 (19%), Positives = 86/230 (37%), Gaps = 26/230 (11%)
Query: 13 EISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKV---PMWIRNTKHGWITAEYGMLPR 68
++S+ ++K A G+ LV++GDT +LT A +K + + G +P
Sbjct: 16 KLSIEVGQLAKQASGAALVRYGDTVVLTAAVGSKKPRPGDFFPLTVNYEEKMYSVGKVPG 75
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
R GR ++ R+I R +R + QI + D A
Sbjct: 76 GFLKR------EGRPSDKATLTARLIDRPIRPLFAEGFRNEVQITSTVFSVDQDCSPEMA 129
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+ G+ +AL G +A + G++ G +++ + D++
Sbjct: 130 AMLGSSIALC-------------ISDIPFDGPIAGVDVGLIDGKYVINPTPEQFEKSDIN 176
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
T I V+ A+ S++ + + I L K Q++++
Sbjct: 177 LTVAGTYE-AINMVEAGAKE--VSEEAMLEAIMFGHEEIKRLCKFQEEIV 223
>gi|194289155|ref|YP_002005062.1| polynucleotide phosphorylase/polyadenylase [Cupriavidus taiwanensis
LMG 19424]
gi|226702643|sp|B3R3W3|PNP_CUPTR RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|193222990|emb|CAQ68995.1| polynucleotide phosphorylase/polyadenylase [Cupriavidus taiwanensis
LMG 19424]
Length = 723
Score = 157 bits (397), Expect = 1e-36, Method: Composition-based stats.
Identities = 50/242 (20%), Positives = 96/242 (39%), Gaps = 18/242 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +R I + V A GS L G+T L ATL +E++ +
Sbjct: 317 RIDGRDTRTVRPIEIRSSVLPRAHGSALFTRGETQALVVATLGTKSDEQIIDALAGEYRD 376
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y M P +TG + + R+ G + RAL V+ + I + +
Sbjct: 377 RFMLHYNMPPFATGETGRVGSPKRREIGHGRL----AKRALIPVLPKEDEFAYTIRLVSE 432
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ G +AL D ++ + +L+G+ A+ +
Sbjct: 433 ITESNGSSSMASVCGGCLALMDAGVPVKAHVAGVAMGLILEGNKFAVLTD---------I 483
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D TD+G I +Q + +++ L AK+ ++ ++
Sbjct: 484 LGDEDHLGDMDFKVAGTDNG-ITALQMDIKVQGITKEIMQVALAQAKEGRLHILSNMQEA 542
Query: 238 IS 239
+
Sbjct: 543 MG 544
Score = 89.9 bits (221), Expect = 3e-16, Method: Composition-based stats.
Identities = 38/233 (16%), Positives = 76/233 (32%), Gaps = 27/233 (11%)
Query: 13 EISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT----KHGWITAEYGMLP 67
++ + +++ A G+ LV DT +L T + + T G +P
Sbjct: 17 KVRMETGEIARQAGGAVLVDVEDTVVLATVVAAKSPKPGQDFFPLTVDYIEKTYAAGKIP 76
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R GR R+I R LR + Q+++ + +
Sbjct: 77 GGFFKR------EGRPSENETLTSRLIDRPLRPLFPEGFYNDVQVVVHVVSLNPEVPADI 130
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
A+ GA A G V A G G +++ + +T D+
Sbjct: 131 PALIGASAA-------------LAVSGIPFNGPVGAARVGYKDGQYLLNPTRSQIATSDL 177
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
D T+ ++ V+ A + S+D + +++ I +++
Sbjct: 178 DLVVAGTER-AVLMVESEANQ--LSEDVMLGAVVYGHEQMQTAINAIHELVRE 227
>gi|163757756|ref|ZP_02164845.1| polynucleotide phosphorylase/polyadenylase [Hoeflea phototrophica
DFL-43]
gi|162285258|gb|EDQ35540.1| polynucleotide phosphorylase/polyadenylase [Hoeflea phototrophica
DFL-43]
Length = 706
Score = 157 bits (397), Expect = 1e-36, Method: Composition-based stats.
Identities = 43/243 (17%), Positives = 89/243 (36%), Gaps = 18/243 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR + +R I + GS L G+T + ATL +E+ + TK
Sbjct: 317 RIDGRDLSTVRPIVSEVGLLPRTHGSALFTRGETQAIVVATLGTGEDEQYVDSLTGTKKA 376
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + + R+ G + RA+ ++ + + + +
Sbjct: 377 TFMLHYNFPPYSVGETGRTGSPGRREIGHGKL----AWRAINPMMPSAEQFPYTLRVVSE 432
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A + G +AL D + + + +G A+ +
Sbjct: 433 ITESNGSSSMATVCGTSLALMDAGVPLAKPVAGIAMGLIKEGEDFAVLSD---------I 483
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T G I +Q + +++ L+ A+ ++K +
Sbjct: 484 LGDEDHLGDMDFKVAGTADG-ITALQMDIKIDGITEEIMKIALSQAEGGRLHILKEMGNA 542
Query: 238 ISN 240
++
Sbjct: 543 LTE 545
Score = 107 bits (267), Expect = 1e-21, Method: Composition-based stats.
Identities = 37/228 (16%), Positives = 69/228 (30%), Gaps = 27/228 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----HGWITAEYGML 66
R + L V++ A+G+ + +G+T +L T + + T G +
Sbjct: 14 RPLILETGKVARQADGAVIATYGETVVLATVVSAKSPKPGQDFFPLTVNYQEKTYAAGKI 73
Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
P R GR R+I R LR + QIII +
Sbjct: 74 PGGYFKR------EGRPSENETLTSRLIDRPLRPLFPDGYKNDTQIIITVMQHDLENNPD 127
Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
L + + G +A G + G +++ E D
Sbjct: 128 I-------------LALVAASAALTISGIPFMGPIAGARVGYINGEYVLNPHVDEMPESD 174
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
+D T+ ++ V+ A+ ++D + +I
Sbjct: 175 LDLVVAGTND-AVLMVESEAKE--LAEDVMLGAVMFGHKSFQPVIDAI 219
>gi|195953232|ref|YP_002121522.1| ribonuclease PH [Hydrogenobaculum sp. Y04AAS1]
gi|226736913|sp|B4U8T3|RNPH_HYDS0 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|195932844|gb|ACG57544.1| ribonuclease PH [Hydrogenobaculum sp. Y04AAS1]
Length = 255
Score = 157 bits (397), Expect = 1e-36, Method: Composition-based stats.
Identities = 106/235 (45%), Positives = 159/235 (67%), Gaps = 2/235 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR + R+ +++R I + R + +AEGSCLV+FG+T ++ TA++ E VP +++ GWIT
Sbjct: 1 MRKNNRKLDELRPIRIQRDFNIHAEGSCLVEFGNTRVICTASIAESVPPFLKGKNQGWIT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEY MLPR+T R RE+V+G+ GGR+ EIQRMIGRA+R+V+DL+ +G R I IDCDVIQ
Sbjct: 61 AEYSMLPRATATRNMRESVTGKIGGRTHEIQRMIGRAMRAVIDLTKIGERTIWIDCDVIQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+I GA++A+ D + + + K S ++ V A+S G++ ++DLD+
Sbjct: 121 ADGGTRTASIVGAFIAMTDAIIKLNE--QKLINSVPIRDTVGAVSVGIVNDRLMLDLDFE 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
EDS VD V T +G +VE+ E AT+++ F AML+L + + + +LQ
Sbjct: 179 EDSNAAVDMTIVATGNGEMVEIHSLGEEATYTRKEFEAMLDLGLESLKQIAELQN 233
>gi|328675736|gb|AEB28411.1| Polyribonucleotide nucleotidyltransferase [Francisella cf. novicida
3523]
Length = 693
Score = 157 bits (397), Expect = 1e-36, Method: Composition-based stats.
Identities = 41/244 (16%), Positives = 85/244 (34%), Gaps = 17/244 (6%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +R I++ V GS L G+T L TL + ++ + +
Sbjct: 317 RIDGRCTETIRPINVKIGVLPGVHGSALFTRGETQALVVTTLGSDRDAQLVESLDGIEKC 376
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G R R + RA ++V + + +
Sbjct: 377 RYMLHYNFPPYSVGECGMVGMAPKR---REIGHANLAKRATQAVFPNEEAYPYVVRVVSE 433
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+++++G + A + G+ +++ D + + + + G A+ +
Sbjct: 434 ILESNGSSSMATVCGSSLSMMDAGVPIAEPVAGIAMGLIKDGAKYAVLSD---------I 484
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T G + +Q + S++ L A+ ++ + +V
Sbjct: 485 LGDEDHLGDMDFKVAGTRYG-VTALQMDIKIKGISREILEQALEQARVGRLHILGIMNEV 543
Query: 238 ISNE 241
I
Sbjct: 544 IKEH 547
Score = 80.3 bits (196), Expect = 2e-13, Method: Composition-based stats.
Identities = 35/228 (15%), Positives = 69/228 (30%), Gaps = 27/228 (11%)
Query: 13 EISLTRR-VSKYAEGSCLVKFG----DTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLP 67
EI L +++ A+GS V G + ++ + + + + T G +P
Sbjct: 14 EIVLETGGMARQADGSVTVSCGNNVVLVTTVVKKSVADGADFFPLSVHYLEKTYAAGKIP 73
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R GR I R+I R++R QI+
Sbjct: 74 GGFLRR------EGRPSEEQILISRLIDRSIRPSFPDGFFNEIQIVATVLSYDGAFSPDI 127
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
A+ G ++ +A + G G I++ + + D+
Sbjct: 128 LALIG-------------ASASLAISGAPYDDVIAGVRVGYTNGKYILNPNKQDLKDSDL 174
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
D T I+ V+ +E + + + A + +I
Sbjct: 175 DLVVSGT-DDAILMVE--SEANSLPESVMLGGILYAHKHLKTIINSIN 219
>gi|300703637|ref|YP_003745239.1| polyribonucleotide nucleotidyltransferase [Ralstonia solanacearum
CFBP2957]
gi|299071300|emb|CBJ42618.1| Polyribonucleotide nucleotidyltransferase [Ralstonia solanacearum
CFBP2957]
Length = 720
Score = 157 bits (397), Expect = 1e-36, Method: Composition-based stats.
Identities = 50/242 (20%), Positives = 96/242 (39%), Gaps = 18/242 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +R I + V A GS L G+T L ATL +E++ ++
Sbjct: 315 RIDGRDTRTVRPIEIRSSVLPRAHGSALFTRGETQALVVATLGTKSDEQIIDALQGEYRD 374
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y M P +TG + + R+ G + RAL V+ + I + +
Sbjct: 375 RFMLHYNMPPFATGETGRVGSPKRREIGHGRL----AKRALIPVLPKDDEFAYTIRLVSE 430
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ G +AL D ++ + +L+G+ A+ +
Sbjct: 431 ITESNGSSSMASVCGGCLALMDAGVPVKAHVAGVAMGLILEGNKFAVLTD---------I 481
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D TD+G I +Q + +++ L AK+ ++ +
Sbjct: 482 LGDEDHLGDMDFKVAGTDNG-ITALQMDIKVQGITKEIMQVALAQAKEGRLHILGKMQSA 540
Query: 238 IS 239
+
Sbjct: 541 MG 542
Score = 94.9 bits (234), Expect = 9e-18, Method: Composition-based stats.
Identities = 37/233 (15%), Positives = 76/233 (32%), Gaps = 31/233 (13%)
Query: 13 EISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT----KHGWITAEYGMLP 67
++ + +++ A G+ L+ DT +L T + + T G +P
Sbjct: 15 KVRMETGEIARQASGAVLLDMDDTVVLATVVGAKNPKPGQDFFPLTVDYIEKTYAAGKIP 74
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R GR R+I R LR + Q+++ I +
Sbjct: 75 GGFFKR------EGRPSENETLTSRLIDRPLRPLFPEGFYNEVQVVVHVLSINPEVPADI 128
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
A+ A AL G V A G G +++ + + + D+
Sbjct: 129 PALVAASAALAVSG-------------LPFNGPVGAARVGYKDGQYLLNPNRAQLAHSDL 175
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKD----RIADLIKLQKD 236
D T+ ++ V+ A++ S++ + + I + L ++
Sbjct: 176 DLVVAGTER-AVLMVESEAQQ--LSEEVMLGAVVYGHEQMQIAINAIHDLVRE 225
>gi|238750796|ref|ZP_04612294.1| Ribonuclease PH [Yersinia rohdei ATCC 43380]
gi|238710940|gb|EEQ03160.1| Ribonuclease PH [Yersinia rohdei ATCC 43380]
Length = 238
Score = 157 bits (397), Expect = 1e-36, Method: Composition-based stats.
Identities = 118/240 (49%), Positives = 160/240 (66%), Gaps = 2/240 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR + R Q+R ++LTR +K+AEGS LV+FGDT +L TAT+EE VP +++ GWIT
Sbjct: 1 MRPADRAAQQVRPLTLTRNYTKHAEGSVLVEFGDTKVLCTATVEEGVPRFLKGQGQGWIT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPR+T +R REA G+QGGR+ EIQR+I R+LR+ VDL LG I +DCDV+Q
Sbjct: 61 AEYGMLPRATHSRNAREAAKGKQGGRTLEIQRLIARSLRAAVDLKKLGEFTITLDCDVLQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+I+GA VAL D L + + +KG VAA+S G++ G + DL+Y
Sbjct: 121 ADGGTRTASISGACVALADALNKLVAS--GKLKANPMKGLVAAVSVGIVKGEALCDLEYV 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
EDS + D N VM + G ++EVQG+AE FS + A+L+LA+ I + QK +
Sbjct: 179 EDSAAETDMNVVMMEDGRMIEVQGTAEGEPFSHEELLALLDLARGGIETIFLAQKAALEQ 238
>gi|254450859|ref|ZP_05064296.1| polyribonucleotide nucleotidyltransferase [Octadecabacter
antarcticus 238]
gi|198265265|gb|EDY89535.1| polyribonucleotide nucleotidyltransferase [Octadecabacter
antarcticus 238]
Length = 710
Score = 157 bits (397), Expect = 1e-36, Method: Composition-based stats.
Identities = 44/243 (18%), Positives = 93/243 (38%), Gaps = 17/243 (6%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR+ +++REI + GS L G+T L TL +E++ ++
Sbjct: 318 RIDGRKTDEIREIVSETGILPRTHGSALFTRGETQGLVVTTLGTGDDEQMIDSLQGMYKS 377
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + R+ G + RAL++V+ + I + +
Sbjct: 378 NFLLHYNFPPYSVGEVGRFGPPGRREIGHGKL----AWRALQAVLPAATDFPYTIRVVSE 433
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ G +++ D ++ + +++ + D+
Sbjct: 434 ITESNGSSSMASVCGGSLSMMDAGVPLKAPVAGVAMGLIME--------DSGEYAILSDI 485
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T++G I +Q + A + L AK ++
Sbjct: 486 LGDEDHLGDMDFKVAGTENG-ITSLQMDIKIAGITPAIMKEALAQAKVGRIHILGEMNKA 544
Query: 238 ISN 240
+S+
Sbjct: 545 MSS 547
Score = 104 bits (258), Expect = 1e-20, Method: Composition-based stats.
Identities = 32/228 (14%), Positives = 65/228 (28%), Gaps = 25/228 (10%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGN 72
++L V++ A+G+ + +G+T ++ T +K E
Sbjct: 16 LTLETGKVARQADGTVIATYGETTVMANVTFAKKQKPGQDFFPLTVHYNEKYYAAGKVP- 74
Query: 73 RVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITG 132
R + R+I R +R + +I A+
Sbjct: 75 -GGFFKREARPTEKETLTSRLIDRPIRPLFVDGFKNEVLVICTVLSHDLVNDPDMVAMIA 133
Query: 133 AWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDS------TID 186
A A G +AA G G I++ + +
Sbjct: 134 ASAA-------------LTISGAPFMGPIAACRVGFEDGDYILNPEMDDMHKLRENPDQR 180
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
+D T ++ V+ A S++ + A +I +I +
Sbjct: 181 LDLVVAGTKD-AVMMVESEAYE--LSEEEMLGAVEFAHAQIQPVIDMI 225
>gi|187932015|ref|YP_001892000.1| polynucleotide phosphorylase/polyadenylase [Francisella tularensis
subsp. mediasiatica FSC147]
gi|257096689|sp|B2SDK7|PNP_FRATM RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|187712924|gb|ACD31221.1| polyribonucleotide nucleotidyltransferase [Francisella tularensis
subsp. mediasiatica FSC147]
Length = 693
Score = 157 bits (397), Expect = 1e-36, Method: Composition-based stats.
Identities = 41/244 (16%), Positives = 85/244 (34%), Gaps = 17/244 (6%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +R I++ V GS L G+T L TL + ++ + +
Sbjct: 317 RIDGRCTETIRPINVKIGVLPGVHGSALFTRGETQALVVTTLGSDRDAQLVESLDGIEKC 376
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G R R + RA ++V + + +
Sbjct: 377 RYMLHYNFPPYSVGECGMVGMAPKR---REIGHANLAKRATQAVFPNEEAYPYVVRVVSE 433
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+++++G + A + G+ +++ D + + + + G A+ +
Sbjct: 434 ILESNGSSSMATVCGSSLSMMDAGVPIAEPVAGIAMGLIKDGAKYAVLSD---------I 484
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T G + +Q + S++ L A+ ++ + +V
Sbjct: 485 LGDEDHLGDMDFKVAGTRYG-VTALQMDIKIKGISREILEQALEQARVGRLHILGIMNEV 543
Query: 238 ISNE 241
I
Sbjct: 544 IKEH 547
Score = 98.8 bits (244), Expect = 7e-19, Method: Composition-based stats.
Identities = 38/228 (16%), Positives = 72/228 (31%), Gaps = 27/228 (11%)
Query: 13 EISLTRR-VSKYAEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTKHGWITAEYGMLP 67
EI L +++ A+GS V G+ +L T ++ + + + + T G +P
Sbjct: 14 EIILETGGMARQADGSVTVSCGNNIVLVTTVVKKSVADGTDFFPLSVHYLEKTYAAGKIP 73
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R GR I R+I R++R QI+
Sbjct: 74 GGFLRR------EGRPSEEQILISRLIDRSIRPSFPDGFFNEIQIVATVLSYDGAFSPDI 127
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
A+ G ++ VA + G G I++ + + D+
Sbjct: 128 LALIG-------------ASASLAISGAPYDDVVAGVRVGYTNGKYILNPNKQDLRDSDL 174
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
D T I+ V+ +E + + + A + +I
Sbjct: 175 DLVVSGT-DDAILMVE--SEANSLPESVMLGGILYAHKHLKTIINSIN 219
>gi|254369705|ref|ZP_04985715.1| polyribonucleotide nucleotidyltransferase [Francisella tularensis
subsp. holarctica FSC022]
gi|157122664|gb|EDO66793.1| polyribonucleotide nucleotidyltransferase [Francisella tularensis
subsp. holarctica FSC022]
Length = 693
Score = 157 bits (397), Expect = 1e-36, Method: Composition-based stats.
Identities = 41/244 (16%), Positives = 85/244 (34%), Gaps = 17/244 (6%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +R I++ V GS L G+T L TL + ++ + +
Sbjct: 317 RIDGRCTETIRPINVKIGVLPGVHGSALFTRGETQALVVTTLGSDRDAQLVESLDGIEKC 376
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G R R + RA ++V + + +
Sbjct: 377 RYMLHYNFPPYSVGECGMVGMAPKR---REIGHANLAKRATQAVFPNEEAYPYVVRVVSE 433
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+++++G + A + G+ +++ D + + + + G A+ +
Sbjct: 434 ILESNGSSSMATVCGSSLSMMDAGVPIAEPVAGIAMGLIKDGAKYAVLSD---------I 484
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T G + +Q + S++ L A+ ++ + +V
Sbjct: 485 LGDEDHLGDMDFKVAGTRYG-VTALQMDIKIKGISREILEQALEQARVGRLHILGIMNEV 543
Query: 238 ISNE 241
I
Sbjct: 544 IKEH 547
Score = 80.3 bits (196), Expect = 2e-13, Method: Composition-based stats.
Identities = 36/228 (15%), Positives = 69/228 (30%), Gaps = 27/228 (11%)
Query: 13 EISLTRR-VSKYAEGSCLVKFG----DTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLP 67
EI L +++ A+GS V G + ++ + + + + T G +P
Sbjct: 14 EIILETGGMARQADGSVTVSCGNNVVLVTTVVKKSVADGTDFFPLSVHYLEKTYAAGKIP 73
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R GR I R+I R++R QI+
Sbjct: 74 GGFLRR------EGRPSEEQILISRLIDRSIRPSFPDGFFNEIQIVATVLSYDGAFSPDI 127
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
A+ G ++ VA + G G I++ + + D+
Sbjct: 128 LALIG-------------ASASLAISGAPYDDVVAGVRVGYTNGKYILNPNKQDLRDSDL 174
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
D T I+ V+ +E + + + A + +I
Sbjct: 175 DLVVSGT-DDAILMVE--SEANSLPESVMLGGILYAHKHLKTIINSIN 219
>gi|134302408|ref|YP_001122378.1| polynucleotide phosphorylase/polyadenylase [Francisella tularensis
subsp. tularensis WY96-3418]
gi|187610267|sp|A4IZA6|PNP_FRATW RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|134050185|gb|ABO47256.1| putative polyribonucleotide nucleotidyltransferase [Francisella
tularensis subsp. tularensis WY96-3418]
Length = 693
Score = 157 bits (397), Expect = 1e-36, Method: Composition-based stats.
Identities = 41/244 (16%), Positives = 85/244 (34%), Gaps = 17/244 (6%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +R I++ V GS L G+T L TL + ++ + +
Sbjct: 317 RIDGRCTETIRPINVKIGVLPGVHGSALFTRGETQALVVTTLGSDRDAQLVESLDGIEKC 376
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G R R + RA ++V + + +
Sbjct: 377 RYMLHYNFPPYSVGECGMVGMAPKR---REIGHANLAKRATQAVFPNEEAYPYVVRVVSE 433
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+++++G + A + G+ +++ D + + + + G A+ +
Sbjct: 434 ILESNGSSSMATVCGSSLSMMDAGVPIAEPVAGIAMGLIKDGAKYAVLSD---------I 484
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T G + +Q + S++ L A+ ++ + +V
Sbjct: 485 LGDEDHLGDMDFKVAGTRYG-VTALQMDIKIKGISREILEQALEQARVGRLHILGIMNEV 543
Query: 238 ISNE 241
I
Sbjct: 544 IKEH 547
Score = 79.1 bits (193), Expect = 5e-13, Method: Composition-based stats.
Identities = 36/228 (15%), Positives = 69/228 (30%), Gaps = 27/228 (11%)
Query: 13 EISLTRR-VSKYAEGSCLVKFG----DTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLP 67
EI L +++ A+GS V G + ++ + + + + T G +P
Sbjct: 14 EIILETGGMARQADGSVTVSCGNNVVLVTTVVKKSVADGTDFFPLSVHYLEKTYAAGKIP 73
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R GR I R+I R++R QI+
Sbjct: 74 GGFLRR------EGRPSEEQILISRLIDRSIRPSFPDGFFNEIQIVATVLSYDGAVAPDI 127
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
A+ G ++ VA + G G I++ + + D+
Sbjct: 128 LALIG-------------ASASLAISGAPYDDVVAGVRVGYTNGKYILNPNKQDLRDSDL 174
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
D T I+ V+ +E + + + A + +I
Sbjct: 175 DLVVSGT-DDAILMVE--SEANSLPESVMLGGILYAHKHLKTIINSIN 219
>gi|118497208|ref|YP_898258.1| polynucleotide phosphorylase/polyadenylase [Francisella tularensis
subsp. novicida U112]
gi|194323507|ref|ZP_03057284.1| 3' exoribonuclease family, domain 2 [Francisella tularensis subsp.
novicida FTE]
gi|254372573|ref|ZP_04988062.1| polyribonucleotide nucleotidyltransferase [Francisella tularensis
subsp. novicida GA99-3549]
gi|254374032|ref|ZP_04989514.1| polyribonucleotide nucleotidyltransferase [Francisella novicida
GA99-3548]
gi|187610266|sp|A0Q5I9|PNP_FRATN RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|118423114|gb|ABK89504.1| polyribonucleotide nucleotidyltransferase [Francisella novicida
U112]
gi|151570300|gb|EDN35954.1| polyribonucleotide nucleotidyltransferase [Francisella novicida
GA99-3549]
gi|151571752|gb|EDN37406.1| polyribonucleotide nucleotidyltransferase [Francisella novicida
GA99-3548]
gi|194322362|gb|EDX19843.1| 3' exoribonuclease family, domain 2 [Francisella tularensis subsp.
novicida FTE]
Length = 693
Score = 157 bits (397), Expect = 1e-36, Method: Composition-based stats.
Identities = 41/244 (16%), Positives = 85/244 (34%), Gaps = 17/244 (6%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +R I++ V GS L G+T L TL + ++ + +
Sbjct: 317 RIDGRCTETIRPINVKIGVLPGVHGSALFTRGETQALVVTTLGSDRDAQLVESLDGIEKC 376
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G R R + RA ++V + + +
Sbjct: 377 RYMLHYNFPPYSVGECGMVGMAPKR---REIGHANLAKRATQAVFPNEEAYPYVVRVVSE 433
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+++++G + A + G+ +++ D + + + + G A+ +
Sbjct: 434 ILESNGSSSMATVCGSSLSMMDAGVPIAEPVAGIAMGLIKDGAKYAVLSD---------I 484
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T G + +Q + S++ L A+ ++ + +V
Sbjct: 485 LGDEDHLGDMDFKVAGTRYG-VTALQMDIKIKGISREILEQALEQARVGRLHILGIMNEV 543
Query: 238 ISNE 241
I
Sbjct: 544 IKEH 547
Score = 80.3 bits (196), Expect = 2e-13, Method: Composition-based stats.
Identities = 36/228 (15%), Positives = 69/228 (30%), Gaps = 27/228 (11%)
Query: 13 EISLTRR-VSKYAEGSCLVKFG----DTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLP 67
EI L +++ A+GS V G + ++ + + + + T G +P
Sbjct: 14 EIILETGGMARQADGSVTVSCGNNVVLVTTVVKKSVADGTDFFPLSVHYLEKTYAAGKIP 73
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R GR I R+I R++R QI+
Sbjct: 74 GGFLRR------EGRPSEEQILISRLIDRSIRPSFPDGFFNEIQIVATVLSYDGAFSPDI 127
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
A+ G ++ VA + G G I++ + + D+
Sbjct: 128 LALIG-------------ASASLAISGAPYDDVVAGVRVGYTNGKYILNPNKQDLRDSDL 174
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
D T I+ V+ +E + + + A + +I
Sbjct: 175 DLVVSGT-DDAILMVE--SEANSLPESVMLGGILYAHKHLKTIINSIN 219
>gi|115315207|ref|YP_763930.1| polynucleotide phosphorylase/polyadenylase [Francisella tularensis
subsp. holarctica OSU18]
gi|122324796|sp|Q0BKU1|PNP_FRATO RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|115130106|gb|ABI83293.1| polyribonucleotide nucleotidyltransferase [Francisella tularensis
subsp. holarctica OSU18]
Length = 693
Score = 157 bits (397), Expect = 1e-36, Method: Composition-based stats.
Identities = 41/244 (16%), Positives = 85/244 (34%), Gaps = 17/244 (6%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +R I++ V GS L G+T L TL + ++ + +
Sbjct: 317 RIDGRCTETIRPINVKIGVLPGVHGSALFTRGETQALVVTTLGSDRDAQLVESLDGIEKC 376
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G R R + RA ++V + + +
Sbjct: 377 RYMLHYNFPPYSVGECGMVGMAPKR---REIGHANLAKRATQAVFPNEEAYPYVVRVVSE 433
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+++++G + A + G+ +++ D + + + + G A+ +
Sbjct: 434 ILESNGSSSMATVCGSSLSMMDAGVPIAEPVAGIAMGLIKDGAKYAVLSD---------I 484
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T G + +Q + S++ L A+ ++ + +V
Sbjct: 485 LGDEDHLGDMDFKVAGTRYG-VTALQMDIKIKGISREILEQALEQARVGRLHILGIMNEV 543
Query: 238 ISNE 241
I
Sbjct: 544 IKEH 547
Score = 79.1 bits (193), Expect = 4e-13, Method: Composition-based stats.
Identities = 36/228 (15%), Positives = 69/228 (30%), Gaps = 27/228 (11%)
Query: 13 EISLTRR-VSKYAEGSCLVKFG----DTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLP 67
EI L +++ A+GS V G + ++ + + + + T G +P
Sbjct: 14 EIILETGGMARQADGSVTVSCGNNVVLVTTVVKKSVADGTDFFPLSVHYLEKTYAAGKIP 73
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R GR I R+I R++R QI+
Sbjct: 74 GGFLRR------EGRPSEEQILISRLIDRSIRPSFPDGFFNEIQIVATVLSYDGAFSPDI 127
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
A+ G ++ VA + G G I++ + + D+
Sbjct: 128 LALIG-------------ASASLAISGAPYDDVVAGVRVGYTNGKYILNPNKQDLRDSDL 174
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
D T I+ V+ +E + + + A + +I
Sbjct: 175 DLVVSGTYD-AILMVE--SEANSLPESVMLGGILYAHKHLKTIINSIN 219
>gi|89256821|ref|YP_514183.1| polynucleotide phosphorylase/polyadenylase [Francisella tularensis
subsp. holarctica LVS]
gi|156502987|ref|YP_001429052.1| polynucleotide phosphorylase/polyadenylase [Francisella tularensis
subsp. holarctica FTNF002-00]
gi|167009860|ref|ZP_02274791.1| 3' exoribonuclease family, domain 2 [Francisella tularensis subsp.
holarctica FSC200]
gi|254368103|ref|ZP_04984123.1| polyribonucleotide nucleotidyltransferase [Francisella tularensis
subsp. holarctica 257]
gi|290953517|ref|ZP_06558138.1| polynucleotide phosphorylase/polyadenylase [Francisella tularensis
subsp. holarctica URFT1]
gi|295313209|ref|ZP_06803868.1| polynucleotide phosphorylase/polyadenylase [Francisella tularensis
subsp. holarctica URFT1]
gi|122500400|sp|Q2A269|PNP_FRATH RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|187610265|sp|A7NDP3|PNP_FRATF RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|89144652|emb|CAJ79976.1| polyribonucleotide nucleotidyltransferase [Francisella tularensis
subsp. holarctica LVS]
gi|134253913|gb|EBA53007.1| polyribonucleotide nucleotidyltransferase [Francisella tularensis
subsp. holarctica 257]
gi|156253590|gb|ABU62096.1| putative polyribonucleotide nucleotidyltransferase [Francisella
tularensis subsp. holarctica FTNF002-00]
Length = 693
Score = 157 bits (397), Expect = 1e-36, Method: Composition-based stats.
Identities = 41/244 (16%), Positives = 85/244 (34%), Gaps = 17/244 (6%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +R I++ V GS L G+T L TL + ++ + +
Sbjct: 317 RIDGRCTETIRPINVKIGVLPGVHGSALFTRGETQALVVTTLGSDRDAQLVESLDGIEKC 376
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G R R + RA ++V + + +
Sbjct: 377 RYMLHYNFPPYSVGECGMVGMAPKR---REIGHANLAKRATQAVFPNEEAYPYVVRVVSE 433
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+++++G + A + G+ +++ D + + + + G A+ +
Sbjct: 434 ILESNGSSSMATVCGSSLSMMDAGVPIAEPVAGIAMGLIKDGAKYAVLSD---------I 484
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T G + +Q + S++ L A+ ++ + +V
Sbjct: 485 LGDEDHLGDMDFKVAGTRYG-VTALQMDIKIKGISREILEQALEQARVGRLHILGIMNEV 543
Query: 238 ISNE 241
I
Sbjct: 544 IKEH 547
Score = 79.1 bits (193), Expect = 4e-13, Method: Composition-based stats.
Identities = 36/228 (15%), Positives = 69/228 (30%), Gaps = 27/228 (11%)
Query: 13 EISLTRR-VSKYAEGSCLVKFG----DTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLP 67
EI L +++ A+GS V G + ++ + + + + T G +P
Sbjct: 14 EIILETGGMARQADGSVTVSCGNNVVLVTTVVKKSVADGTDFFPLSVHYLEKTYAAGKIP 73
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R GR I R+I R++R QI+
Sbjct: 74 GGFLRR------EGRPSEEQILISRLIDRSIRPSFPDGFFNEIQIVATVLSYDGAFSPDI 127
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
A+ G ++ VA + G G I++ + + D+
Sbjct: 128 LALIG-------------ASASLAISGAPYDDVVAGVRVGYTNGKYILNPNKQDLRDSDL 174
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
D T I+ V+ +E + + + A + +I
Sbjct: 175 DLVVSGTYD-AILMVE--SEANSLPESVMLGGILYAHKHLKTIINSIN 219
>gi|149913069|ref|ZP_01901603.1| hypothetical protein RAZWK3B_03735 [Roseobacter sp. AzwK-3b]
gi|149813475|gb|EDM73301.1| hypothetical protein RAZWK3B_03735 [Roseobacter sp. AzwK-3b]
Length = 712
Score = 157 bits (397), Expect = 1e-36, Method: Composition-based stats.
Identities = 44/243 (18%), Positives = 90/243 (37%), Gaps = 17/243 (6%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR + +R+I + GS L G+T L TL +E++ +
Sbjct: 319 RIDGRSLDTVRQIVSETGLLPRTHGSALFTRGETQALVVTTLGTGDDEQIIDALHGNFRS 378
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + R+ G + RAL++V+ I + +
Sbjct: 379 NFLLHYNFPPYSVGEAGRVGPPGRREVGHGKL----AWRALQAVLPAPTDFPYTIRVVSE 434
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ G +++ D ++ + +L+ + D+
Sbjct: 435 ITESNGSSSMASVCGGSLSMMDAGVPLKAPVAGVAMGLILEDD--------GEYAVLTDI 486
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T+ G I +Q + A + + L AKD ++ +
Sbjct: 487 LGDEDHLGDMDFKVAGTEKG-ITSLQMDIKVAGITPEIMKKALAQAKDGRLHILNEMSNA 545
Query: 238 ISN 240
++
Sbjct: 546 LTE 548
Score = 107 bits (266), Expect = 2e-21, Method: Composition-based stats.
Identities = 33/228 (14%), Positives = 64/228 (28%), Gaps = 25/228 (10%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGN 72
++L V++ A+GS + G+T ++ T ++ E
Sbjct: 17 LTLETGKVARQADGSVIATLGETSVMANVTFAKEPKPGQDFFPLTVHYQEKYYAAGKVP- 75
Query: 73 RVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITG 132
R + R+I R +R + ++ A+
Sbjct: 76 -GGFFKREARPTEKETLTARLIDRPIRPLFVSGFKHEVLVMCTVLSHDLVNDPDIVAMIA 134
Query: 133 AWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDS------TID 186
A A G +A G G I++ D +
Sbjct: 135 ASAA-------------LTISGAPFMGPIAGCRVGYSDGEYILNPDVEDMHDLRNNPDQR 181
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
+D T ++ V+ A S+D + A ++I +I L
Sbjct: 182 LDLVVAGTKD-AVMMVESEAYE--LSEDEMLGAVTFAHEQIQPVIDLI 226
>gi|83746292|ref|ZP_00943345.1| Polyribonucleotide nucleotidyltransferase [Ralstonia solanacearum
UW551]
gi|83727042|gb|EAP74167.1| Polyribonucleotide nucleotidyltransferase [Ralstonia solanacearum
UW551]
Length = 720
Score = 157 bits (397), Expect = 1e-36, Method: Composition-based stats.
Identities = 50/242 (20%), Positives = 96/242 (39%), Gaps = 18/242 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +R I + V A GS L G+T L ATL +E++ ++
Sbjct: 315 RIDGRDTRTVRPIEIRSSVLPRAHGSALFTRGETQALVVATLGTKSDEQIIDALQGEYRD 374
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y M P +TG + + R+ G + RAL V+ + I + +
Sbjct: 375 RFMLHYNMPPFATGETGRVGSPKRREIGHGRL----AKRALIPVLPKDDEFAYTIRLVSE 430
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ G +AL D ++ + +L+G+ A+ +
Sbjct: 431 ITESNGSSSMASVCGGCLALMDAGVPVKAHVAGVAMGLILEGNKFAVLTD---------I 481
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D TD+G I +Q + +++ L AK+ ++ +
Sbjct: 482 LGDEDHLGDMDFKVAGTDNG-ITALQMDIKVQGITKEIMQVALAQAKEGRLHILGKMQSA 540
Query: 238 IS 239
+
Sbjct: 541 MG 542
Score = 94.9 bits (234), Expect = 9e-18, Method: Composition-based stats.
Identities = 37/233 (15%), Positives = 76/233 (32%), Gaps = 31/233 (13%)
Query: 13 EISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT----KHGWITAEYGMLP 67
++ + +++ A G+ L+ DT +L T + + T G +P
Sbjct: 15 KVRMETGEIARQASGAVLLDMDDTVVLATVVGAKNPKPGQDFFPLTVDYIEKTYAAGKIP 74
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R GR R+I R LR + Q+++ I +
Sbjct: 75 GGFFKR------EGRPSENETLTSRLIDRPLRPLFPEGFYNEVQVVVHVLSINPEVPADI 128
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
A+ A AL G V A G G +++ + + + D+
Sbjct: 129 PALVAASAALAVSG-------------LPFNGPVGAARVGYKDGQYLLNPNRAQLAHSDL 175
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKD----RIADLIKLQKD 236
D T+ ++ V+ A++ S++ + + I + L ++
Sbjct: 176 DLVVAGTER-AVLMVESEAQQ--LSEEVMLGAVVYGHEQMQIAINAIHDLVRE 225
>gi|320106016|ref|YP_004181606.1| ribonuclease PH [Terriglobus saanensis SP1PR4]
gi|319924537|gb|ADV81612.1| ribonuclease PH [Terriglobus saanensis SP1PR4]
Length = 246
Score = 157 bits (396), Expect = 1e-36, Method: Composition-based stats.
Identities = 119/240 (49%), Positives = 155/240 (64%), Gaps = 2/240 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
R GR Q+R I LT AEGS L++ G+T +L AT+E VP W+RN+ GW+T
Sbjct: 9 FRPGGRTAAQLRSIKLTPDYVATAEGSVLIEAGNTRVLCNATIEPSVPGWLRNSGKGWVT 68
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEY MLPR+T R RE+ G+ GGR+ EIQR+IGR+LRSVVDL ALG R II+DCDV+Q
Sbjct: 69 AEYSMLPRATLTRTPRESERGKIGGRTHEIQRLIGRSLRSVVDLKALGERMIILDCDVLQ 128
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTAAITGA VAL L + LK VAA S G++ G ++DL Y
Sbjct: 129 ADGGTRTAAITGACVALAMALDKLVAAGTLPVS--PLKQLVAATSVGIVDGNILLDLAYE 186
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
EDS DVD N VMT+ G +VEVQ +AE T+++ A+L++A + +L+ Q+ V+
Sbjct: 187 EDSRADVDMNVVMTEDGGLVEVQATAEHNTYTRPQLDALLDIAASGVKNLLVHQRSVLKK 246
>gi|238650252|ref|YP_002916103.1| polynucleotide phosphorylase/polyadenylase [Rickettsia peacockii
str. Rustic]
gi|259534152|sp|C4K0F4|PNP_RICPU RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|238624350|gb|ACR47056.1| polynucleotide phosphorylase/polyadenylase [Rickettsia peacockii
str. Rustic]
Length = 748
Score = 157 bits (396), Expect = 1e-36, Method: Composition-based stats.
Identities = 46/243 (18%), Positives = 87/243 (35%), Gaps = 18/243 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHG 57
R+ GR +R+I+ + A GS L G+T L + T L+E++ +
Sbjct: 316 RIDGRSTTDIRQIACEIGLLPSAHGSALFTRGETQSLVSTTFGTSLDEQIVDSLEGEYKE 375
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S + +A S R+ G + RA+ ++ I + +
Sbjct: 376 RFMLNYIFPPYSVNEAMPMKAPSRREVGHGKL----AWRAINPILPNKVQFPYSIRVVAE 431
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+++G + A + G+ +AL ++ + V +G A+ +
Sbjct: 432 TTESNGSSSMATVCGSSLALMYAGVPIKAPVAGIAMGLVKEGKNFAVLSD---------I 482
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T G I +Q + + L A+ +++ V
Sbjct: 483 LGDEDYFGDMDFKVAGTSEG-ITALQMDIKISGVDFKIMKVALEQARLGRLHILEQMNKV 541
Query: 238 ISN 240
IS
Sbjct: 542 ISK 544
Score = 91.1 bits (224), Expect = 1e-16, Method: Composition-based stats.
Identities = 41/230 (17%), Positives = 81/230 (35%), Gaps = 22/230 (9%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEY-GMLPRSTG 71
+ L+ +++ A+G+ VK G++ LL TA + K +T Y M +
Sbjct: 16 LELSTGKIARQADGAVTVKMGNSVLLCTAVVANKAK---EGIGLLPLTINYREMAYAAGK 72
Query: 72 NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAIT 131
G+ R + R+I R +R + + + + + AI
Sbjct: 73 IPGGFFKHEGKASDREVLVSRLIDRPIRPLFHPAFVNETHVTCSVLSYDPETPVDILAII 132
Query: 132 GAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANF 191
GA A VAA G++ G +++ T +D
Sbjct: 133 GASAA-------------LSLSPAPYLEIVAASKVGLINGEFVLNPTLALLKTSQLDLVV 179
Query: 192 VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
T G ++ V+ +E S++ + + +IK+ K+ ++ E
Sbjct: 180 AGTS-GSVMMVE--SEAHLLSEEQMLEAVKFGFESFQPVIKIIKE-LAEE 225
>gi|229586754|ref|YP_002845255.1| polynucleotide phosphorylase/polyadenylase [Rickettsia africae
ESF-5]
gi|259534150|sp|C3PNK2|PNP_RICAE RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|228021804|gb|ACP53512.1| Polyribonucleotide nucleotidyltransferase [Rickettsia africae
ESF-5]
Length = 748
Score = 157 bits (396), Expect = 1e-36, Method: Composition-based stats.
Identities = 46/243 (18%), Positives = 87/243 (35%), Gaps = 18/243 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHG 57
R+ GR +R+I+ + A GS L G+T L + T L+E++ +
Sbjct: 316 RIDGRSTTDIRQIACEIGLLPSAHGSALFTRGETQSLVSTTFGTSLDEQIVDSLEGEYKE 375
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S + +A S R+ G + RA+ ++ I + +
Sbjct: 376 RFMLNYIFPPYSVNEAMPMKAPSRREVGHGKL----AWRAINPILPNKVQFPYSIRVVAE 431
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+++G + A + G+ +AL ++ + V +G A+ +
Sbjct: 432 TTESNGSSSMATVCGSSLALMYAGVPIKAPVAGIAMGLVKEGKNFAVLSD---------I 482
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T G I +Q + + L A+ +++ V
Sbjct: 483 LGDEDYFGDMDFKVAGTSEG-ITALQMDIKISGVDFKIMKVALEQARLGRLHILEQMNKV 541
Query: 238 ISN 240
IS
Sbjct: 542 ISK 544
Score = 91.4 bits (225), Expect = 9e-17, Method: Composition-based stats.
Identities = 39/229 (17%), Positives = 78/229 (34%), Gaps = 20/229 (8%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGN 72
+ L+ +++ A+G+ VK G++ LL TA + K I M +
Sbjct: 16 LELSTGKIARQADGAVTVKMGNSVLLCTAVVANKAKEGIGFLPLTINYR--EMAYAAGKI 73
Query: 73 RVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITG 132
G+ R + R+I R +R + + + + + AI G
Sbjct: 74 PGGFFKHEGKASDREVLVSRLIDRPIRPLFHPAFVNETHVTCSVLSYDPETPVDILAIIG 133
Query: 133 AWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFV 192
A A VAA G++ G +++ T +D
Sbjct: 134 ASAA-------------LSLSPAPYLEIVAASKVGLINGEFVLNPTLALLKTSQLDLVVA 180
Query: 193 MTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
T ++ V+ +E S++ + + +IK+ K+ ++ E
Sbjct: 181 GTSD-SVMMVE--SEAHLLSEEQMLEAVKFGFESFQPVIKIIKE-LAEE 225
>gi|15892586|ref|NP_360300.1| polynucleotide phosphorylase/polyadenylase [Rickettsia conorii str.
Malish 7]
gi|81528220|sp|Q92HV7|PNP_RICCN RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|15619751|gb|AAL03201.1| polyribonucleotide nucleotidyltransferase [Rickettsia conorii str.
Malish 7]
Length = 749
Score = 157 bits (396), Expect = 1e-36, Method: Composition-based stats.
Identities = 46/243 (18%), Positives = 87/243 (35%), Gaps = 18/243 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHG 57
R+ GR +R+I+ + A GS L G+T L + T L+E++ +
Sbjct: 316 RIDGRSTTDIRQIACEIGLLPSAHGSALFTRGETQSLVSTTFGTSLDEQIVDSLEGEYKE 375
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S + +A S R+ G + RA+ ++ I + +
Sbjct: 376 RFMLNYIFPPYSVNEAMPMKAPSRREVGHGKL----AWRAINPILPNKVQFPYSIRVVAE 431
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+++G + A + G+ +AL ++ + V +G A+ +
Sbjct: 432 TTESNGSSSMATVCGSSLALMYAGVPIKAPVAGIAMGLVKEGKNFAVLSD---------I 482
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T G I +Q + + L A+ +++ V
Sbjct: 483 LGDEDYFGDMDFKVAGTSEG-ITALQMDIKISGVDFKIMKVALEQARLGRLHILEQMNKV 541
Query: 238 ISN 240
IS
Sbjct: 542 ISK 544
Score = 91.4 bits (225), Expect = 9e-17, Method: Composition-based stats.
Identities = 39/229 (17%), Positives = 78/229 (34%), Gaps = 20/229 (8%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGN 72
+ L+ +++ A+G+ VK G++ LL TA + K I M +
Sbjct: 16 LELSTGKIARQADGAVTVKMGNSVLLCTAVVANKAKEGIGFLPLTINYR--EMAYAAGKI 73
Query: 73 RVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITG 132
G+ R + R+I R +R + + + + + AI G
Sbjct: 74 PGGFFKHEGKASDREVLVSRLIDRPIRPLFHPAFVNETHVTCSVLSYDPETPVDILAIIG 133
Query: 133 AWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFV 192
A A VAA G++ G +++ T +D
Sbjct: 134 ASAA-------------LSLSPAPYLEIVAASKVGLINGEFVLNPTLALLKTSQLDLVVA 180
Query: 193 MTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
T ++ V+ +E S++ + + +IK+ K+ ++ E
Sbjct: 181 GTSD-SVMMVE--SEAHLLSEEQMLEAVKFGFESFQPVIKIIKE-LAEE 225
>gi|240849876|ref|YP_002971264.1| polyribonucleotide nucleotidyltransferase [Bartonella grahamii
as4aup]
gi|240266999|gb|ACS50587.1| polyribonucleotide nucleotidyltransferase [Bartonella grahamii
as4aup]
Length = 731
Score = 157 bits (396), Expect = 1e-36, Method: Composition-based stats.
Identities = 42/243 (17%), Positives = 85/243 (34%), Gaps = 18/243 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR + +R I + GS L G+T + ATL +E+ +
Sbjct: 317 RIDGRNLSTVRPIQSEVSILPRTHGSALFTRGETQAIVVATLGTGEDEQYVDSLTGMYKE 376
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + + R+ G + RA+ ++ I +
Sbjct: 377 TFLLHYNFPPFSVGETGRFGSPGRREIGHGKL----AWRAIHPMLPTKESFPYTIRAVSE 432
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A + G +AL D + + + +G A+ +
Sbjct: 433 ITESNGSSSMATVCGTSLALMDAGVPLARPVAGIAMGLIKEGERFAVLSD---------I 483
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T++G I +Q + +++ L AK ++
Sbjct: 484 LGDEDHLGDMDFKVAGTENG-ITALQMDIKIDGITEEIMKIALEQAKGGRIHILNEMAKA 542
Query: 238 ISN 240
+++
Sbjct: 543 LTS 545
Score = 108 bits (270), Expect = 6e-22, Method: Composition-based stats.
Identities = 31/228 (13%), Positives = 70/228 (30%), Gaps = 27/228 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----HGWITAEYGML 66
R ++L +++ A+G+ + +G+T +L T + + + G +
Sbjct: 14 RPLTLETGKIARQADGAVIATYGETIVLATVVSAKSPKPDQDFFPLTVNYQEKSYAVGRI 73
Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
P R R + R+I R +R + Q+I+ +
Sbjct: 74 PGGYLKR------ESRPSENETLVSRLIDRPIRPLFVEGYKNDTQVIVSVIQHDLENNPD 127
Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
A+ + A G +A G G +++ E
Sbjct: 128 ILAMIASSAA-------------LTLSGVPFMGPIAGARVGYCNGQYVLNPHIDEMPESK 174
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
+D T+S ++ V+ A+ +D + + ++
Sbjct: 175 LDLVVAGTES-AVLMVESEAQE--LPEDIMLGAVMFGHKGLQPVLDAI 219
>gi|88658296|ref|YP_507529.1| polynucleotide phosphorylase/polyadenylase [Ehrlichia chaffeensis
str. Arkansas]
gi|123493143|sp|Q2GGA4|PNP_EHRCR RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|88599753|gb|ABD45222.1| polyribonucleotide nucleotidyltransferase [Ehrlichia chaffeensis
str. Arkansas]
Length = 796
Score = 157 bits (396), Expect = 1e-36, Method: Composition-based stats.
Identities = 49/243 (20%), Positives = 88/243 (36%), Gaps = 18/243 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +++R+I + V A GS L G+T L L +E++ + +
Sbjct: 319 RIDGRAFDEIRDIEIEVDVLPKAHGSALFTRGNTQALVVTALGTPQDEQIVDDLDGDRRE 378
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P + G A R+ G + RA+R V+ + I + +
Sbjct: 379 NFLLHYNFPPYAVGESAALRAPGRREIGHGKL----AWRAIRYVLPEKSDFPYTIRVVSE 434
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ ++DG + A + GA +AL D ++ + + + I +
Sbjct: 435 ITESDGSSSMATVCGASLALMDTGVPIKSPVAGIAMGLIKEDDRFIILSD---------I 485
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T G + +Q + + D L AKD ++ V
Sbjct: 486 LGDEDHLGDMDFKVAGTAEG-VTALQMDMKISGIDIDIIEKALLQAKDGRMHILSKMNAV 544
Query: 238 ISN 240
I
Sbjct: 545 IQE 547
Score = 76.0 bits (185), Expect = 4e-12, Method: Composition-based stats.
Identities = 33/227 (14%), Positives = 68/227 (29%), Gaps = 24/227 (10%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLE---EKVPMWIRNTKHGWITAEYGMLPRS 69
+ L +++ A G+ +V + T +L T E V + + G +P
Sbjct: 16 LVLESGKIARQASGAVMVSYAGTTVLATVVTGKTKEPVDFLPLTVQFVAKSYAVGKIPGG 75
Query: 70 TGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAA 129
R G+ R I R+I R++R + I+ + A
Sbjct: 76 FLKR------EGKPSDRETLISRLIDRSIRPLFPAGFYDEISIVCNLLSYDTVTPPEVTA 129
Query: 130 ITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDA 189
+ GA AL + + G +++ E +D
Sbjct: 130 LVGATAALSISGVPFNGLVVGAR-----------VGYLPSEGKYLLNASADEMLCSSLDL 178
Query: 190 NFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ++ V+ A + + + ++I L K+
Sbjct: 179 FLSGNED-SVLMVESEASELS--ESQMLGAITFGHQHCQEVINLIKE 222
>gi|85710513|ref|ZP_01041577.1| polyribonucleotide nucleotidyltransferase [Erythrobacter sp. NAP1]
gi|85687691|gb|EAQ27696.1| polyribonucleotide nucleotidyltransferase [Erythrobacter sp. NAP1]
Length = 762
Score = 157 bits (396), Expect = 1e-36, Method: Composition-based stats.
Identities = 49/241 (20%), Positives = 92/241 (38%), Gaps = 18/241 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKHG 57
R+ GR+ +Q+R I + GS L G+T + T TL E++ + +
Sbjct: 320 RIDGRKLDQVRPIEAMVGLLPRTHGSALFTRGETQAICTTTLGTKDAEQMIDGLEGLSYS 379
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + S R+ G + RALR V+ + I + D
Sbjct: 380 NFMLHYNFPPYSVGEVGRFGFTSRRETGHGKL----AFRALRPVLPDAEEFPYTIRVLSD 435
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A + G +++ D + + + +L+G A+ +
Sbjct: 436 ITESNGSSSMATVCGGALSMMDAGVPLARPVSGIAMGLILEGEDFAVLSD---------I 486
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D ++ G I +Q + A +Q+ L AK A ++
Sbjct: 487 LGDEDHLGDMDFKVAGSEEG-ITSLQMDIKVAGITQEIMTQALEQAKAGRAHILGEMAKA 545
Query: 238 I 238
+
Sbjct: 546 L 546
Score = 96.5 bits (238), Expect = 3e-18, Method: Composition-based stats.
Identities = 33/236 (13%), Positives = 71/236 (30%), Gaps = 31/236 (13%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT----KHGWITAEYGMLPR 68
++L +++ A+G+ L +G+T +L T + V + + G +P
Sbjct: 16 LTLETGRIARQADGAVLATYGETVVLCAVTAAKSVKEGQDFFPLTVHYQEKFSAAGRIPG 75
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
R GR + R+I R R + +I +
Sbjct: 76 GFFKR------EGRATEKETLTSRLIDRPCRPLFPEGFYNEINVIAQVLSYDGETEPDIV 129
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID-- 186
A+ A A G + A G V D+ +
Sbjct: 130 AMIAASAA-------------LTISGVPFMGPIGAARVGFTNDGEYVLNPTVADALGEDG 176
Query: 187 -VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
+D T ++ V+ A+ +++ + A + +I + ++ +
Sbjct: 177 RLDLVVAATQD-AVMMVESEAKE--LTEEEMLGAVMFAHEESRKVIGAIIE-LAEQ 228
>gi|73666963|ref|YP_302979.1| polynucleotide phosphorylase/polyadenylase [Ehrlichia canis str.
Jake]
gi|123615003|sp|Q3YSC4|PNP_EHRCJ RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|72394104|gb|AAZ68381.1| 3 exoribonuclease:RNA binding S1:KH [Ehrlichia canis str. Jake]
Length = 796
Score = 157 bits (396), Expect = 1e-36, Method: Composition-based stats.
Identities = 51/243 (20%), Positives = 89/243 (36%), Gaps = 18/243 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +++R I + V A GS L G+T L L +E++ + +
Sbjct: 319 RIDGRAFDEIRNIEIEVDVLPKAHGSALFTRGNTQALVVTALGTPQDEQIVDDLDGDRRE 378
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P + G A R+ G + RA+R V+ + I + +
Sbjct: 379 NFLLHYNFPPYAVGESAALRAPGRREIGHGKL----AWRAIRYVLPEKSDFPYTIRVVSE 434
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ ++DG + A + GA +AL D ++ + + +G I +
Sbjct: 435 ITESDGSSSMATVCGASLALMDTGVPIKSPVAGIAMGLIKEGDKFIILSD---------I 485
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T G + +Q + + S D L AKD ++ V
Sbjct: 486 LGDEDYLGDMDFKVAGTAEG-VTALQMDMKISGISVDVIEKALLQAKDGRMHILSKMNAV 544
Query: 238 ISN 240
I
Sbjct: 545 IQE 547
Score = 74.5 bits (181), Expect = 1e-11, Method: Composition-based stats.
Identities = 30/227 (13%), Positives = 68/227 (29%), Gaps = 24/227 (10%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLE---EKVPMWIRNTKHGWITAEYGMLPRS 69
+ L +++ A G+ +V + T +L T E V + + G +P
Sbjct: 16 LILESGKIARQANGAVMVSYAGTTVLATVVTGKTKEPVDFLPLTVQFVAKSYAVGKIPGG 75
Query: 70 TGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAA 129
R G+ R I R+I R++R + I+ + A
Sbjct: 76 FLKR------EGKPSDRETLISRLIDRSIRPLFPSGFYDEVSIVCNLLSYDTVTPPEVTA 129
Query: 130 ITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDA 189
+ GA AL ++ + +++ + +D
Sbjct: 130 LIGATAALSISGVSFNGLVAGVRIGYLPSEDK-----------YLLNASADDMLYSSLDL 178
Query: 190 NFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ++ V+ A + + + ++I L ++
Sbjct: 179 FLSGNED-SVLMVESEASELS--ESQMLRAVTFGHQNCQEVINLIRE 222
>gi|296122989|ref|YP_003630767.1| ribonuclease PH [Planctomyces limnophilus DSM 3776]
gi|296015329|gb|ADG68568.1| ribonuclease PH [Planctomyces limnophilus DSM 3776]
Length = 239
Score = 157 bits (396), Expect = 1e-36, Method: Composition-based stats.
Identities = 108/242 (44%), Positives = 150/242 (61%), Gaps = 7/242 (2%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK---HG 57
MR GRQ +++R I + R+ +K A GS L+ GDT LL TA+++E +P W G
Sbjct: 1 MRHDGRQPDELRPIRIQRQFTKVAPGSVLISAGDTTLLVTASIDETLPPWKAADPAAQKG 60
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
W+TAEY MLP ST R +R + GRS EIQR+IGR+LR+ VD LG R I+ID +
Sbjct: 61 WLTAEYCMLPGSTSPRKRR--EREKVDGRSTEIQRLIGRSLRACVDFETLGPRTIMIDVE 118
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
V+QADGGTRT ITG ++AL D + + D +K + +AA+S G+ G PI+DL
Sbjct: 119 VLQADGGTRTLGITGGYIALCDAIATLGDKVSKDRPVL--TTSIAAVSVGISHGTPILDL 176
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
DY EDS +VD N VMT SG +E+QG+AE +F++ L LA+ I L++LQ+
Sbjct: 177 DYIEDSQAEVDLNVVMTGSGEFIEIQGTAEGRSFTRAQLDQQLALAEKGIRQLMELQQAA 236
Query: 238 IS 239
+
Sbjct: 237 LK 238
>gi|241207064|ref|YP_002978160.1| polynucleotide phosphorylase/polyadenylase [Rhizobium leguminosarum
bv. trifolii WSM1325]
gi|240860954|gb|ACS58621.1| Polyribonucleotide nucleotidyltransferase [Rhizobium leguminosarum
bv. trifolii WSM1325]
Length = 712
Score = 157 bits (396), Expect = 1e-36, Method: Composition-based stats.
Identities = 43/243 (17%), Positives = 84/243 (34%), Gaps = 18/243 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +R I + GS L G+T + ATL +E+ +
Sbjct: 316 RIDGRNLETVRPIVSEVGLLPRTHGSALFTRGETQAIVVATLGTGEDEQYVDSLTGMYKE 375
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + + R+ G + RA+R ++ + + +
Sbjct: 376 RFLLHYNFPPYSVGETGRMGSPGRREIGHGKL----AWRAIRPMLPTPEQFPYTLRVVSE 431
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A + G +AL D + + +L+G A+ +
Sbjct: 432 ITESNGSSSMATVCGTSLALMDAGVPLAKPVAGIAMGLILEGDRFAVLSD---------I 482
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T G I +Q + +++ L A+ ++
Sbjct: 483 LGDEDHLGDMDFKVAGTADG-ITSLQMDIKITGITEEIMKVALGQAQGGRVHILGEMSKA 541
Query: 238 ISN 240
I+
Sbjct: 542 ITE 544
Score = 111 bits (276), Expect = 1e-22, Method: Composition-based stats.
Identities = 31/228 (13%), Positives = 69/228 (30%), Gaps = 27/228 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEE----KVPMWIRNTKHGWITAEYGML 66
R + L +++ A+G+ L +G+T +L T + + + T G +
Sbjct: 14 RPLKLETGKIARQADGAVLATYGETVVLATVVSAKAPKAGQDFFPLTVNYQEKTYAAGKI 73
Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
P R GR + + R+I R +R + Q+++ +
Sbjct: 74 PGGYFKR------EGRPSEKETLVSRLIDRPIRPLFPEGYKNDTQVVVTVIQHDLENDPD 127
Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
++ A G V G + G +++ E
Sbjct: 128 VLSMVATSAA-------------LTLSGVPFMGPVGGARVGYINGEYVLNPHLDEMDESS 174
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
+D T ++ V+ A+ ++D + ++
Sbjct: 175 LDLVVAGTYD-AVLMVESEAKE--LNEDIMLGAVMFGHKGFQPVLDAI 219
>gi|323697461|ref|ZP_08109373.1| polyribonucleotide nucleotidyltransferase [Desulfovibrio sp. ND132]
gi|323457393|gb|EGB13258.1| polyribonucleotide nucleotidyltransferase [Desulfovibrio
desulfuricans ND132]
Length = 753
Score = 157 bits (396), Expect = 1e-36, Method: Composition-based stats.
Identities = 53/244 (21%), Positives = 93/244 (38%), Gaps = 18/244 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
+R+ GR +R +S+ V + GS L + G+T L TATL +E+ +
Sbjct: 321 LRIDGRNTTTVRPLSIEVGVLQQTHGSALFRRGETCSLATATLGSTRDEQRYDSLLGDAT 380
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P G S R+ G RAL V+ I +
Sbjct: 381 KRFMLHYNFPPYCVGEARMLRGPSRREVGHGAL----AERALTPVIPDPENFPFTIRVVS 436
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
++++++G + A++ GA ++L D + D + +G + + D
Sbjct: 437 EIMESNGSSSMASVCGATLSLMDAGVPISDPVAGIAMGLCKEGD---------QYFVLTD 487
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED+ D+D T G I +Q + A QD L AK+ ++ +
Sbjct: 488 ILGDEDALGDMDFKVAGTRDG-ITAIQMDIKIAGIPQDVLKKALQQAKEARTHILDHMAE 546
Query: 237 VISN 240
VI+
Sbjct: 547 VIAK 550
Score = 101 bits (252), Expect = 8e-20, Method: Composition-based stats.
Identities = 43/234 (18%), Positives = 74/234 (31%), Gaps = 25/234 (10%)
Query: 13 EISLTRR-VSKYAEGSCLVKFGDTHLLTTAT---LEEKVPMWIRNTKHGWITAEYGMLPR 68
+I+L ++ A G+ + GDT +L TA L E + + + G +P
Sbjct: 19 DITLETGKYARQASGAVTISSGDTTVLVTAVTQPLAEDRGFFPLTCNYQEMAYAAGRVPG 78
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
+ R GR R + R+I R +R + QII
Sbjct: 79 NYFRR-----EVGRPSERETLVSRLIDRPIRPLFAKGFTDEVQIIATVLSADKRVNPDVL 133
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+TGA A H G + G + ++ Y
Sbjct: 134 ALTGASAACH-------------ISKMPFLGPIVGARVGYVDNEFVLYPSYKGIEERSSL 180
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNEV 242
+V V+G S+D L +++ L +Q + + +V
Sbjct: 181 NLIFAATRDAMVMVEGGG--NFVSEDLVADALAWGHEQVRPLFDIQDE-LREKV 231
>gi|218296616|ref|ZP_03497334.1| Polyribonucleotide nucleotidyltransferase [Thermus aquaticus
Y51MC23]
gi|218242929|gb|EED09462.1| Polyribonucleotide nucleotidyltransferase [Thermus aquaticus
Y51MC23]
Length = 713
Score = 157 bits (396), Expect = 1e-36, Method: Composition-based stats.
Identities = 52/241 (21%), Positives = 92/241 (38%), Gaps = 18/241 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R GR +R I + V A GS + G+T +L T TL +E++ + +
Sbjct: 328 RADGRGPKDLRPIWIEVDVLPRAHGSAVFTRGETQVLGTVTLGTGRDEQIIDDLGIDETD 387
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P STG + VS R+ G RALR+V+ I + D
Sbjct: 388 PFLVHYNFPPFSTGEVKRLRGVSRREVGHGNL----AKRALRAVLPSQEAFPYTIRVVGD 443
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
V++++G + A + +AL D ++ + V + A I +
Sbjct: 444 VLESNGSSSMATVCAGSLALMDAGVPVKAPVAGVAMGLVWENEKAVILTD---------I 494
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED+ D+D T G + +Q + ++ L A++ ++ L + V
Sbjct: 495 LGLEDALGDMDFKVAGTRQG-VTALQMDNKVGGLPREVLKEALLQAREARLKILDLMEMV 553
Query: 238 I 238
+
Sbjct: 554 L 554
Score = 109 bits (272), Expect = 3e-22, Method: Composition-based stats.
Identities = 42/228 (18%), Positives = 77/228 (33%), Gaps = 26/228 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKV---PMWIRNTKHGWITAEYGMLP 67
R + L +K A GS LV++GDT +L TA ++ + G +P
Sbjct: 21 RTLILETGKYAKQASGSVLVRYGDTVVLATAQASDEPVEADFLPLTVEFEERHYAVGKIP 80
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
S R GR G ++ RM R +R + Q+I+
Sbjct: 81 GSFMRR------EGRPGEKAILSARMTDRPIRPLFPKGFRHEVQVIVTVLSADQKNPPDI 134
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
+ + +G VA++ G+L G +++ E +
Sbjct: 135 LG-------------PIAASAALMLSDIPWEGPVASVRVGLLGGQLVLNPTLQELEESAL 181
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
D + I+ V+ A+ ++ L A + ++ LQ+
Sbjct: 182 DLVVAGSRD-AILMVEAGAQE--VDEETLVQALEFAHREMQPILDLQE 226
>gi|298246516|ref|ZP_06970322.1| polyribonucleotide nucleotidyltransferase [Ktedonobacter racemifer
DSM 44963]
gi|297553997|gb|EFH87862.1| polyribonucleotide nucleotidyltransferase [Ktedonobacter racemifer
DSM 44963]
Length = 816
Score = 157 bits (396), Expect = 1e-36, Method: Composition-based stats.
Identities = 45/242 (18%), Positives = 80/242 (33%), Gaps = 14/242 (5%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56
+R GR +R I+ + GS L G T +L+ T EE+V + +
Sbjct: 311 IRPDGRDTKTIRNITCEVGLLPRTHGSALFTRGQTQVLSVITLGSPGEEQVLDGLGTNDN 370
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P STG R+ G RA+ V+ I
Sbjct: 371 KRFMHHYNFPPYSTGESKPLRGPGRREIGHGAL----AERAVSPVIPTQEEFPYTIRAVS 426
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
D++ ++G T ++ G +AL + + + + + D
Sbjct: 427 DILSSNGSTSMGSVCGTTLALMEAGVPIHAPVAGVAMGLIT-----GEGEREGKWAVLSD 481
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED+ D+D T G + +Q + + D L A + +++ D
Sbjct: 482 IQGIEDALGDMDFKVAGTADG-VTALQMDIKVKGITYDVMAKALEQAHEGRMFIMEKMLD 540
Query: 237 VI 238
I
Sbjct: 541 AI 542
Score = 105 bits (261), Expect = 6e-21, Method: Composition-based stats.
Identities = 44/232 (18%), Positives = 82/232 (35%), Gaps = 27/232 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEK----VPMWIRNTKHGWITAEYGML 66
R +S+ V++ + G+ LV++GDT +L TA ++ + + G +
Sbjct: 12 RVMSIETGRVAEQSSGAVLVRYGDTVILATAVGSDEPREGIDFFPLTVDVEERMYAAGKI 71
Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
P R GR + R+ R LR + QI+I + +
Sbjct: 72 PGGFIKR------EGRATEHAILASRLTDRPLRPLFPKGYRNDVQIVITVLSVDQENDPD 125
Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
I GA A G V A+ G + +++ S
Sbjct: 126 IMGIVGASAA-------------LSISDVPFAGPVGAVRVGYVDDQFVINPPASAMSRSK 172
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
+D T I+ V+ A+ +D L + + + DL+K+Q+ ++
Sbjct: 173 LDLAIAGTAD-AIMMVEAGAKE--LPEDMMLEALRVGHEALQDLVKMQEKLV 221
>gi|150388833|ref|YP_001318882.1| polynucleotide phosphorylase/polyadenylase [Alkaliphilus
metalliredigens QYMF]
gi|187470925|sp|A6TM05|PNP2_ALKMQ RecName: Full=Polyribonucleotide nucleotidyltransferase 2; AltName:
Full=Polynucleotide phosphorylase 2; Short=PNPase 2
gi|149948695|gb|ABR47223.1| Polyribonucleotide nucleotidyltransferase [Alkaliphilus
metalliredigens QYMF]
Length = 702
Score = 157 bits (396), Expect = 1e-36, Method: Composition-based stats.
Identities = 46/244 (18%), Positives = 92/244 (37%), Gaps = 18/244 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEE----KVPMWIRNTKH 56
+R R+ +++R IS + G+ L G+T +LT TL + + +
Sbjct: 311 IRPDNRKLDEIRPISSEVGILPRTHGTGLFTRGETQVLTVTTLGDLRDAQRIDGLGEEDE 370
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P S G S R+ G + RAL+ ++ I +
Sbjct: 371 KRYMHHYNFPPYSVGETRFMRGPSRREIGHGAL----VERALKPMIPCKEDFPYAIRLVS 426
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V+ +G + A++ G+ ++L D ++ + + + AI
Sbjct: 427 EVLACNGSSSQASVCGSTLSLMDAGVPIKGMVAGIAMGLIKEEGQIAILSD--------- 477
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED+ D+D T++G I +Q + A ++ L AK ++ K+
Sbjct: 478 IQGMEDALGDMDLKVAGTENG-ITALQMDIKIAGIDRNIMETALAQAKIGRTHILNKMKE 536
Query: 237 VISN 240
I++
Sbjct: 537 AITS 540
Score = 108 bits (269), Expect = 8e-22, Method: Composition-based stats.
Identities = 40/234 (17%), Positives = 86/234 (36%), Gaps = 27/234 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRN----TKHGWITAEYGML 66
R + V++ A+GSC++K+GDT +L TA ++ + + G +
Sbjct: 12 RPFVVELGKVAELAQGSCMIKYGDTFVLVTACASKEPKEGLDFFPLSCDYEEKLYAVGKI 71
Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
P R R ++ R+I R +R + Q+I + D
Sbjct: 72 PGGFIKR------ESRPSEKATLTARLIDRPIRPLFPKGYHNDVQVIATVLSVDQDCPPD 125
Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
+A+ G+ +A + G A++S GM+ G IV+ + +
Sbjct: 126 ISAMIGSSIA-------------LSVSNIPFMGPTASVSVGMIDGKYIVNPTSEQKELSE 172
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
++ T ++ ++ A ++ + A + I ++ + ++S
Sbjct: 173 LELIVSGTKD-AVMMIEAGANE--LTEAQILDAIMFAHEEIKKIVTFIEHIVSE 223
>gi|187611319|sp|A4WWP0|PNP_RHOS5 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
Length = 714
Score = 157 bits (396), Expect = 1e-36, Method: Composition-based stats.
Identities = 46/243 (18%), Positives = 89/243 (36%), Gaps = 17/243 (6%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +R I V GS L G+T L TL +E++ +
Sbjct: 318 RIDGRDTKTVRPIISETSVLPRTHGSALFTRGETQALVVTTLGTGEDEQIIDALHGNSRS 377
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + R+ G + RAL++V+ + I + +
Sbjct: 378 NFLLHYNFPPYSVGEVGRFGPPGRREIGHGKL----AWRALQAVLPAATDFPYTIRVVSE 433
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ G +++ D ++ + +L+ + D+
Sbjct: 434 ITESNGSSSMASVCGGSLSMMDAGVPLKAPVAGVAMGLILEDD--------GKWAVLTDI 485
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T++G I +Q + A + L AKD ++
Sbjct: 486 LGDEDHLGDMDFKVAGTENG-ITSLQMDIKVAGITPAIMEQALAQAKDGRMHILGEMSKA 544
Query: 238 ISN 240
+S+
Sbjct: 545 LSS 547
Score = 101 bits (250), Expect = 1e-19, Method: Composition-based stats.
Identities = 29/228 (12%), Positives = 61/228 (26%), Gaps = 25/228 (10%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGN 72
++L V++ A+GS + G+T ++ T + E
Sbjct: 16 LTLETGKVARQADGSVIATLGETSVMANVTFAKAAKPGQDFFPLTVHYQERYYAAGKVP- 74
Query: 73 RVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITG 132
R + R+I R +R + +I+ A+
Sbjct: 75 -GGFFKREARPSEKETLTSRLIDRPIRPLFVDGFKNEVLLIVTVLSHDLVNEPDIVAMIA 133
Query: 133 AWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDST------ID 186
A A G + A G G +++ D +
Sbjct: 134 ASAA-------------LTISGVPFMGPIGAARVGYANGEYVLNPDVDDMQKLRENPEQR 180
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
+D T ++ V+ A S+ + + + +I +
Sbjct: 181 LDLVIAGTKD-AVMMVESEAYE--LSEAEMLGAVKFGHEAMQPVIDMI 225
>gi|300691020|ref|YP_003752015.1| polyribonucleotide nucleotidyltransferase [Ralstonia solanacearum
PSI07]
gi|299078080|emb|CBJ50723.1| Polyribonucleotide nucleotidyltransferase [Ralstonia solanacearum
PSI07]
Length = 722
Score = 157 bits (396), Expect = 1e-36, Method: Composition-based stats.
Identities = 50/242 (20%), Positives = 95/242 (39%), Gaps = 18/242 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +R I + V A GS L G+T L ATL +E++ +
Sbjct: 315 RIDGRDTRTVRPIEIRSSVLPRAHGSALFTRGETQALVVATLGTKSDEQIIDALSGEYRD 374
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y M P +TG + + R+ G + RAL V+ + I + +
Sbjct: 375 RFMLHYNMPPFATGETGRVGSPKRREIGHGRL----AKRALIPVLPKEDEFAYTIRLVSE 430
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ G +AL D ++ + +L+G+ A+ +
Sbjct: 431 ITESNGSSSMASVCGGCLALMDAGVPVKAHVAGVAMGLILEGNKFAVLTD---------I 481
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D TD+G I +Q + +++ L AK+ ++ +
Sbjct: 482 LGDEDHLGDMDFKVAGTDNG-ITALQMDIKVQGITKEIMQVALAQAKEGRLHILGKMQSA 540
Query: 238 IS 239
+
Sbjct: 541 MG 542
Score = 94.5 bits (233), Expect = 1e-17, Method: Composition-based stats.
Identities = 37/233 (15%), Positives = 75/233 (32%), Gaps = 31/233 (13%)
Query: 13 EISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT----KHGWITAEYGMLP 67
++ + +++ A G+ L+ DT +L T + + T G +P
Sbjct: 15 KVRMETGEIARQASGAVLLDMDDTVVLATVVGAKNAKPGQDFFPLTVDYIEKTYAAGKIP 74
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R GR R+I R LR + Q+++ I +
Sbjct: 75 GGFFKR------EGRPSENETLTSRLIDRPLRPLFPEGFYNEVQVVVHVLSINPEVPADI 128
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
A+ + AL G V A G G +++ + + + D+
Sbjct: 129 PALVASSAALAVSG-------------LPFNGPVGAARVGYKDGQYLLNPNRAQLAHSDL 175
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKD----RIADLIKLQKD 236
D T+ ++ V+ A + S+D + + I + L ++
Sbjct: 176 DLVVAGTER-AVLMVESEANQ--LSEDVMLGAVVYGHEQMQIAINAIHDLVRE 225
>gi|150388828|ref|YP_001318877.1| polynucleotide phosphorylase/polyadenylase [Alkaliphilus
metalliredigens QYMF]
gi|187470924|sp|A6TM00|PNP1_ALKMQ RecName: Full=Polyribonucleotide nucleotidyltransferase 1; AltName:
Full=Polynucleotide phosphorylase 1; Short=PNPase 1
gi|149948690|gb|ABR47218.1| Polyribonucleotide nucleotidyltransferase [Alkaliphilus
metalliredigens QYMF]
Length = 702
Score = 157 bits (396), Expect = 1e-36, Method: Composition-based stats.
Identities = 46/244 (18%), Positives = 92/244 (37%), Gaps = 18/244 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEE----KVPMWIRNTKH 56
+R R+ +++R IS + G+ L G+T +LT TL + + +
Sbjct: 311 IRPDNRKLDEIRPISSEVGILPRTHGTGLFTRGETQVLTVTTLGDLRDAQRIDGLGEEDE 370
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P S G S R+ G + RAL+ ++ I +
Sbjct: 371 KRYMHHYNFPPYSVGETRFMRGPSRREIGHGAL----VERALKPMIPCKEDFPYAIRLVS 426
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V+ +G + A++ G+ ++L D ++ + + + AI
Sbjct: 427 EVLACNGSSSQASVCGSTLSLMDAGVPIKGMVAGIAMGLIKEEGQIAILSD--------- 477
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED+ D+D T++G I +Q + A ++ L AK ++ K+
Sbjct: 478 IQGMEDALGDMDLKVAGTENG-ITALQMDIKIAGIDRNIMETALAQAKIGRTHILNKMKE 536
Query: 237 VISN 240
I++
Sbjct: 537 AITS 540
Score = 108 bits (269), Expect = 8e-22, Method: Composition-based stats.
Identities = 40/234 (17%), Positives = 86/234 (36%), Gaps = 27/234 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRN----TKHGWITAEYGML 66
R + V++ A+GSC++K+GDT +L TA ++ + + G +
Sbjct: 12 RPFVVELGKVAELAQGSCMIKYGDTFVLVTACASKEPKEGLDFFPLSCDYEEKLYAVGKI 71
Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
P R R ++ R+I R +R + Q+I + D
Sbjct: 72 PGGFIKR------ESRPSEKATLTARLIDRPIRPLFPKGYHNDVQVIATVLSVDQDCPPD 125
Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
+A+ G+ +A + G A++S GM+ G IV+ + +
Sbjct: 126 ISAMIGSSIA-------------LSVSNIPFMGPTASVSVGMIDGEYIVNPTSEQKELSE 172
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
++ T ++ ++ A ++ + A + I ++ + ++S
Sbjct: 173 LELIVSGTKD-AVMMIEAGANE--LTEAQILDAIMFAHEEIKKIVTFIEHIVSE 223
>gi|157828537|ref|YP_001494779.1| polynucleotide phosphorylase/polyadenylase [Rickettsia rickettsii
str. 'Sheila Smith']
gi|165933253|ref|YP_001650042.1| polynucleotide phosphorylase/polyadenylase [Rickettsia rickettsii
str. Iowa]
gi|187611282|sp|A8GS96|PNP_RICRS RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|189037314|sp|B0BXR0|PNP_RICRO RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|157801018|gb|ABV76271.1| polynucleotide phosphorylase/polyadenylase [Rickettsia rickettsii
str. 'Sheila Smith']
gi|165908340|gb|ABY72636.1| polyribonucleotide nucleotidyltransferase [Rickettsia rickettsii
str. Iowa]
Length = 748
Score = 157 bits (396), Expect = 1e-36, Method: Composition-based stats.
Identities = 46/243 (18%), Positives = 87/243 (35%), Gaps = 18/243 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHG 57
R+ GR +R+I+ + A GS L G+T L + T L+E++ +
Sbjct: 316 RIDGRSTTDIRQIACEIGLLPSAHGSALFTRGETQSLVSTTFGTSLDEQIVDSLEGEYKE 375
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S + +A S R+ G + RA+ ++ I + +
Sbjct: 376 RFMLNYIFPPYSVNEAMPMKAPSRREVGHGKL----AWRAINPILPNKVQFPYSIRVVAE 431
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+++G + A + G+ +AL ++ + V +G A+ +
Sbjct: 432 TTESNGSSSMATVCGSSLALMYAGVPIKAPVAGIAMGLVKEGKNFAVLSD---------I 482
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T G I +Q + + L A+ +++ V
Sbjct: 483 LGDEDYFGDMDFKVAGTGEG-ITALQMDIKISGVDFKIMKVALEQARLGRLHILEQMNKV 541
Query: 238 ISN 240
IS
Sbjct: 542 ISK 544
Score = 93.8 bits (231), Expect = 2e-17, Method: Composition-based stats.
Identities = 39/229 (17%), Positives = 78/229 (34%), Gaps = 20/229 (8%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGN 72
+ L+ +++ A+G+ VK G++ LL TA + K I M +
Sbjct: 16 LELSTGKIARQADGAVTVKMGNSVLLCTAVVANKAKEGIGFLPLTINYR--EMAYAAGKI 73
Query: 73 RVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITG 132
G+ R + R+I R +R + + + + + AI G
Sbjct: 74 PGGFFKHEGKPSDREVLVSRLIDRPIRPLFHPAFVNETHVTCSVLSYDPETPVDILAIIG 133
Query: 133 AWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFV 192
A A VAA G++ G +++ T +D
Sbjct: 134 ASAA-------------LSLSPAPYLEIVAASKVGLINGEFVLNPTLALLKTSQLDLVVA 180
Query: 193 MTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
T ++ V+ +E S++ + + +IK+ K+ ++ E
Sbjct: 181 GTSD-SVMMVE--SEAHLLSEEQMLEAVKFGFESFQPVIKIIKE-LAEE 225
>gi|296132896|ref|YP_003640143.1| polyribonucleotide nucleotidyltransferase [Thermincola sp. JR]
gi|296031474|gb|ADG82242.1| polyribonucleotide nucleotidyltransferase [Thermincola potens JR]
Length = 735
Score = 157 bits (396), Expect = 2e-36, Method: Composition-based stats.
Identities = 43/242 (17%), Positives = 91/242 (37%), Gaps = 18/242 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56
+R+ GR+ +++R I + GS L G T +LT T +E++ + +
Sbjct: 348 IRIDGRKLDEVRPIECHVGILPRTHGSGLFTRGQTQVLTVTTLGAVGDEQILDGLGVEES 407
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P S G R+ G RAL ++ I +
Sbjct: 408 KRYMHHYNFPPYSVGEARFMRGPGRREIGHGAL----AERALEPMIPSEDEFPYTIRLVS 463
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V++++G + ++ G+ ++L D ++ + + + + A+
Sbjct: 464 EVLESNGSSSMGSVCGSTLSLMDAGVPIKRPVSGVAMGLIKEEDAFAVLTD--------- 514
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T+ G + +Q + A S++ L A++ ++ +
Sbjct: 515 IQGMEDHLGDMDFKVAGTEKG-VTAIQMDIKIAGISKEILQVALTQAREGRMHILSKMLE 573
Query: 237 VI 238
VI
Sbjct: 574 VI 575
Score = 104 bits (258), Expect = 2e-20, Method: Composition-based stats.
Identities = 41/230 (17%), Positives = 79/230 (34%), Gaps = 27/230 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKHGWITAEYGML 66
RE+ + ++K A G+ ++GDT +L TAT E + + + G +
Sbjct: 35 REMVIETGRMAKQATGAVFCRYGDTAVLVTATCSPEPREGIDFFPLTVDYEERLYAVGKI 94
Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
P R GR ++ R+I R +R + I+ + D
Sbjct: 95 PGGFIKR------EGRPSEKAILSSRLIDRPIRPLFPKGYRNDVHIVATVLSVDQDNAPD 148
Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
AI GA AL G + A+ G + G I++ + D
Sbjct: 149 VTAINGASAALM-------------ISGIPFLGPIGAVVVGRVDGKFIINPTIAQAEVSD 195
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ T ++ V+ A+ ++ ++ + I ++ +D
Sbjct: 196 MHLTVAGTKD-AVIMVEAGAKEVP--EEVILEAISYGHEEIKKIVSFLED 242
>gi|187611322|sp|A4XYD6|PNP_PSEMY RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
Length = 702
Score = 157 bits (396), Expect = 2e-36, Method: Composition-based stats.
Identities = 47/243 (19%), Positives = 89/243 (36%), Gaps = 18/243 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +R + + V GS L G+T L ATL + ++ + K
Sbjct: 317 RIDGRDTRTVRPLKIEVGVLDKTHGSALFTRGETQALVVATLGTARDAQLLDTLEGEKKD 376
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + R+ G + R + +++ I + +
Sbjct: 377 PFMLHYNFPPFSVGECGRMGGAGRREIGHGRL----ARRGVAAMLPKDDEFPYTIRVVSE 432
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ GA +AL D M+ + VL+G A+ +
Sbjct: 433 ITESNGSSSMASVCGASLALMDAGVPMKAPVAGIAMGLVLEGEKFAVLTD---------I 483
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T G + +Q + +++ L A + +++ V
Sbjct: 484 LGDEDHLGDMDFKVAGTAKG-VTALQMDIKIQGITEEIMEQALEQALEARLNILGQMNQV 542
Query: 238 ISN 240
IS
Sbjct: 543 ISQ 545
Score = 96.1 bits (237), Expect = 4e-18, Method: Composition-based stats.
Identities = 32/230 (13%), Positives = 73/230 (31%), Gaps = 29/230 (12%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTH-LLTTATLEEKVPM----WIRNTKHGWITAEYGMLP 67
++L +++ A G+ LV + +L T + + + + T G +P
Sbjct: 15 VTLETGRIARQASGAVLVTVDNDVTVLVTVVGAKTADPSKGFFPLSVHYQEKTYAAGKIP 74
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R GR + R+I R +R + + Q++
Sbjct: 75 GGFFKR------EGRPSEKETLTSRLIDRPIRPLFPEGFMNEVQVVCTVVSTSKKTDPDI 128
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY-PIVDLDYGEDSTID 186
A++ G A G + A +++ +Y +
Sbjct: 129 ASMIGTSAA-------------LAVSGIPFNGPIGAARVAFHPDTGYLLNPNYEQLKASS 175
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+D T++ ++ V+ +E ++D + A +I+ K+
Sbjct: 176 LDMVVAGTET-AVLMVE--SEADELTEDQMLGAVLFAHQEFQAVIQAVKE 222
>gi|157825781|ref|YP_001493501.1| polynucleotide phosphorylase/polyadenylase [Rickettsia akari str.
Hartford]
gi|187611278|sp|A8GNL8|PNP_RICAH RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|157799739|gb|ABV74993.1| polynucleotide phosphorylase/polyadenylase [Rickettsia akari str.
Hartford]
Length = 747
Score = 157 bits (396), Expect = 2e-36, Method: Composition-based stats.
Identities = 45/243 (18%), Positives = 87/243 (35%), Gaps = 18/243 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHG 57
R+ GR +R+I+ + A GS L G+T L + T L+E++ +
Sbjct: 316 RIDGRSTTDIRQIACEIGLLPSAHGSALFTRGETQSLVSTTFGTSLDEQLVDSLDGEYKE 375
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
+Y P S + +A S R+ G + RA+ ++ I + +
Sbjct: 376 RFMLDYIFPPYSVNEAMPMKAPSRREVGHGKL----AWRAINPILPNKVQFPYAIRVVAE 431
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+++G + A + + +AL ++ + V +G A+ +
Sbjct: 432 TTESNGSSSMATVCSSSLALMYAGVPIKAPVAGIAMGLVKEGKKFAVLSD---------I 482
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T G I +Q + + A L A+ ++ +
Sbjct: 483 LGDEDYFGDMDFKVAGTSEG-ITALQMDIKISGVDFKIMKAALEQARLGRLHILDQMNKI 541
Query: 238 ISN 240
IS
Sbjct: 542 ISK 544
Score = 95.7 bits (236), Expect = 6e-18, Method: Composition-based stats.
Identities = 38/232 (16%), Positives = 80/232 (34%), Gaps = 27/232 (11%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKHGWITAEYGMLPR 68
+ L+ +++ A+G+ VK G++ LL A + E + + + + G +P
Sbjct: 16 LELSTGKIARQADGAVTVKMGNSVLLCAAVVANKAKEGIGFFPLTINYREMAYAAGKIPG 75
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
R G+ R + R+I R +R + + + + +
Sbjct: 76 GFFKR------EGKASDREVLVSRLIDRPIRPLFHPAFVNETHVTCTVLSYDPETPVDIL 129
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
AI GA A VAA G++ G +++ T +D
Sbjct: 130 AIIGASAA-------------LSLSPAPYLEIVAASKVGLIDGEFVLNPTLELLKTSQLD 176
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
T ++ V+ +E S++ + + +IK+ K++
Sbjct: 177 LVVAGTAD-SVMMVE--SEANLLSEEQMLEAVKFGFESFQPIIKIIKELAKE 225
>gi|312134904|ref|YP_004002242.1| polyribonucleotide nucleotidyltransferase [Caldicellulosiruptor
owensensis OL]
gi|311774955|gb|ADQ04442.1| polyribonucleotide nucleotidyltransferase [Caldicellulosiruptor
owensensis OL]
Length = 701
Score = 157 bits (396), Expect = 2e-36, Method: Composition-based stats.
Identities = 50/241 (20%), Positives = 89/241 (36%), Gaps = 17/241 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHG 57
R GR+ +++R + + GS L K G T +LT AT E + + +
Sbjct: 313 RPDGRKFDEIRPLYAEVGILPRTHGSALFKRGYTQVLTVATLGTKGEMQFLDGLEEEEAK 372
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P STG R+ G RAL V+ I + +
Sbjct: 373 RYMHHYNFPPFSTGESKPIRGPGRREIGHGAL----AERALEPVIPSEDEFPYTIRLVSE 428
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
V+ ++G T A++ G+ +AL D ++ + + K + I + D+
Sbjct: 429 VLTSNGSTSQASVCGSTLALMDAGVPIKAPVAGISIGLITKEDGSFI--------LLTDI 480
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T G I +Q + +++ L AK+ ++ + +
Sbjct: 481 QGIEDFFGDMDFKVAGTREG-ITAIQLDIKIHGLTREIIEKALYQAKEARLKILDFMQTI 539
Query: 238 I 238
I
Sbjct: 540 I 540
Score = 105 bits (261), Expect = 6e-21, Method: Composition-based stats.
Identities = 37/234 (15%), Positives = 79/234 (33%), Gaps = 27/234 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVP----MWIRNTKHGWITAEYGML 66
RE+S + A G+ L ++GDT +L TA EK + + G +
Sbjct: 13 RELSFEIGKYALLANGAVLARYGDTAVLVTACASEKPREGINFFPLTVDYEERLYSVGKI 72
Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
P R G+ ++ R+I R +R + +I + D
Sbjct: 73 PGGFIKR------EGKPSEKAILSARLIDRPIRPLFPKDFYHDVSVIATVLSVDPDNPPD 126
Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
A+ G+ VA +G ++ G + G +++ E
Sbjct: 127 VLAMLGSSVA-------------LSISDIPFEGPTGSVLVGYVDGRIVINPTAKEREVSK 173
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
+ T ++ ++ A+ +D + A++ I +++ + ++
Sbjct: 174 LHLVVSGTKD-RVMMIEAGAKEVP--EDIMIEAIMTAQEEIKKIVEFIEGIVKE 224
>gi|299066328|emb|CBJ37512.1| Polyribonucleotide nucleotidyltransferase [Ralstonia solanacearum
CMR15]
Length = 717
Score = 157 bits (396), Expect = 2e-36, Method: Composition-based stats.
Identities = 50/242 (20%), Positives = 96/242 (39%), Gaps = 18/242 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +R I + V A GS L G+T L ATL +E++ ++
Sbjct: 315 RIDGRDTRTVRPIEIRSSVLPRAHGSALFTRGETQALVVATLGTKSDEQIIDALQGEYRD 374
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y M P +TG + + R+ G + RAL V+ + I + +
Sbjct: 375 RFMLHYNMPPFATGETGRVGSPKRREIGHGRL----AKRALIPVLPKDDEFAYTIRLVSE 430
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ G +AL D ++ + +L+G+ A+ +
Sbjct: 431 ITESNGSSSMASVCGGCLALMDAGVPVKAHVAGVAMGLILEGNKFAVLTD---------I 481
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D TD+G I +Q + +++ L AK+ ++ +
Sbjct: 482 LGDEDHLGDMDFKVAGTDNG-ITALQMDIKVQGITKEIMQVALAQAKEGRLHILGKMQAA 540
Query: 238 IS 239
+
Sbjct: 541 MG 542
Score = 92.2 bits (227), Expect = 6e-17, Method: Composition-based stats.
Identities = 38/233 (16%), Positives = 76/233 (32%), Gaps = 31/233 (13%)
Query: 13 EISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT----KHGWITAEYGMLP 67
++ + +++ A G+ L+ DT +L T + + T G +P
Sbjct: 15 KVRMETGEIARQASGAVLLDMDDTVVLATVVGAKNAKPGQDFFPLTVDYIEKTYAAGKIP 74
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R GR R+I R LR + Q++I I +
Sbjct: 75 GGFFKR------EGRPSENETLTSRLIDRPLRPLFPEGFYNEVQVVIHVLSINPEVPADI 128
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
A+ A AL G V A G G +++ + + + D+
Sbjct: 129 PALVAASAALAVSG-------------LPFNGPVGAARVGYKDGQYLLNPNRAQLAHSDL 175
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKD----RIADLIKLQKD 236
D T+ ++ V+ A++ S++ + + I + + +D
Sbjct: 176 DLVVAGTER-AVLMVESEAQQ--LSEEVMLGAVVYGHEQMQIAINAIHDMVRD 225
>gi|260889890|ref|ZP_05901153.1| polyribonucleotide nucleotidyltransferase [Leptotrichia hofstadii
F0254]
gi|260860496|gb|EEX74996.1| polyribonucleotide nucleotidyltransferase [Leptotrichia hofstadii
F0254]
Length = 699
Score = 157 bits (396), Expect = 2e-36, Method: Composition-based stats.
Identities = 48/243 (19%), Positives = 87/243 (35%), Gaps = 18/243 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R GRQ ++R I + GS L G+T L ATL +E++ + +
Sbjct: 321 RADGRQTTEIRPIDVEIDTLPVPHGSALFTRGETQALVVATLGSKEDEQIIDGMEDETRK 380
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G A R+ G RAL+ V+ + + + +
Sbjct: 381 KFFLHYNFPPYSVGEAGFMRAPGRRELGHGNL----AERALKYVMPETDKFPYTVRLVSE 436
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A+I G +AL ++ + + +G + +
Sbjct: 437 ITESNGSSSQASICGGSLALMAAGVPIKSTVAGIAMGLIKEGETFTVLTD---------I 487
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T G I +Q + +++ L A + +I + V
Sbjct: 488 QGLEDHLGDMDFKVAGTRDG-ITAIQMDIKIEGITREIMEIALRQALEGRLFIIDKMEAV 546
Query: 238 ISN 240
IS
Sbjct: 547 ISE 549
Score = 104 bits (259), Expect = 1e-20, Method: Composition-based stats.
Identities = 39/233 (16%), Positives = 77/233 (33%), Gaps = 27/233 (11%)
Query: 13 EISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGMLP 67
+I ++ +++ A GS +V+ G T LL TAT + E + + G P
Sbjct: 15 KIKISTGKIARQAGGSVVVQCGGTMLLVTATRSKDVREGQDFFPLTVDYIEKFYASGKFP 74
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R + G I R+I R +R + L + I++
Sbjct: 75 GGFIKR------ETKPGTDEVLISRLIDRPIRPLFPEGFLNAVHIVVTVLSYDEVNYPEN 128
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
A G A G VA ++ G + G I++ + ++
Sbjct: 129 LATIGVSAA-------------LGLSDIPFAGTVAGVTVGYINGEYILNPTGEQLLESEI 175
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
+ T + V+ A+ S++ + ++I ++ Q +
Sbjct: 176 QLSVAGTKD-AVTMVEAGAKE--VSEEVMLEAIMFGHEKIKEICAEQDKFLEQ 225
>gi|315497234|ref|YP_004086038.1| polyribonucleotide nucleotidyltransferase [Asticcacaulis
excentricus CB 48]
gi|315415246|gb|ADU11887.1| polyribonucleotide nucleotidyltransferase [Asticcacaulis
excentricus CB 48]
Length = 760
Score = 157 bits (396), Expect = 2e-36, Method: Composition-based stats.
Identities = 45/242 (18%), Positives = 91/242 (37%), Gaps = 18/242 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +++R+I V GS L G+T L ATL +E+ + T
Sbjct: 327 RVDGRAVDKVRQIVSEVGVLPRTHGSALFTRGETQALVVATLGTGEDEQFIDALEGTYKE 386
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + + R+ G + RA+R ++ + + + +
Sbjct: 387 RFLLHYNFPPYSVGEAGRMGSPGRREIGHGKL----AWRAIRPMLPSAEEFPYTLRVVSE 442
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A + G ++L D ++ + + +L+ A+ +
Sbjct: 443 ITESNGSSSMATVCGTSLSLMDAGVPLKRPVSGIAMGLILEKDGYAVLSD---------I 493
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T+ G I +Q + +++ L A + ++
Sbjct: 494 LGDEDHLGDMDFKVAGTELG-ITSLQMDIKVPGITEEIMTKALRQANEGRLHILGEMNKA 552
Query: 238 IS 239
IS
Sbjct: 553 IS 554
Score = 111 bits (276), Expect = 1e-22, Method: Composition-based stats.
Identities = 32/235 (13%), Positives = 73/235 (31%), Gaps = 28/235 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----HGWITAEYGML 66
R+++L +++ A+ + L +G+T +L T + T G +
Sbjct: 24 RKLTLETGRIARQADAAVLATYGETTVLATVVYARAPKPGQDFFPLTVNYQEKTFAAGKI 83
Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
P R GR + + R+I R +R + Q+++ +
Sbjct: 84 PGGYFKR------EGRPSEKETLVSRLIDRPIRPLFVKGFKNEVQVVVTVLSHDMENDPD 137
Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
+ A A G + G++ +++ +
Sbjct: 138 ILGMVAASAA-------------LTLSGVPFMGPIGGARVGVINDEYVLNPSLDQMKESA 184
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
+D T ++ V+ A+ S+D L A + +I + ++
Sbjct: 185 LDLVVAGTQD-ALMMVESEAQE--LSEDKMLGALMFAHAGMQPVIDAIIE-LAEH 235
>gi|222147153|ref|YP_002548110.1| polynucleotide phosphorylase/polyadenylase [Agrobacterium vitis S4]
gi|254782700|sp|B9JYL0|PNP_AGRVS RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|221734143|gb|ACM35106.1| polyribonucleotide nucleotidyltransferase [Agrobacterium vitis S4]
Length = 714
Score = 157 bits (396), Expect = 2e-36, Method: Composition-based stats.
Identities = 44/243 (18%), Positives = 89/243 (36%), Gaps = 18/243 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +R I + GS L G+T + ATL +E+ +
Sbjct: 316 RIDGRDLETVRAIVSEVGILPRTHGSALFTRGETQAIVVATLGTGEDEQYVDSLTGMYKE 375
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + + R+ G + RA+R ++ + + +
Sbjct: 376 RFLLHYNFPPYSVGETGRMGSPGRREIGHGKL----AWRAIRPMLPSPEQFPYTLRVVSE 431
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A + G +AL D + + +L+G A+ +
Sbjct: 432 ITESNGSSSMATVCGTSLALMDAGVPLAKPVAGIAMGLILEGERFAVLSD---------I 482
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T++G I +Q + A +++ L A++ ++ +
Sbjct: 483 LGDEDHLGDMDFKVAGTEAG-ITSLQMDIKIAGITEEIMKVALAQAQNGRKHILGEMANA 541
Query: 238 ISN 240
I+
Sbjct: 542 ITE 544
Score = 109 bits (271), Expect = 5e-22, Method: Composition-based stats.
Identities = 33/228 (14%), Positives = 69/228 (30%), Gaps = 27/228 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----HGWITAEYGML 66
R + L +++ A+G+ L +G+T +L T + + T G +
Sbjct: 14 RPLKLETGKIARQADGAVLASYGETVVLATVVSAKSPKPGQDFFPLTVNYQEKTYAAGKI 73
Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
P R GR + + R+I R +R + Q+++ +
Sbjct: 74 PGGYFKR------EGRPSEKETLVSRLIDRPIRPLFPEGYKNDTQVVVTVIQHDLENDPD 127
Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
++ A A G V G + G +++ E
Sbjct: 128 VLSMVAASAA-------------LTLSGVPFMGPVGGARVGYINGEYVLNPHLDEMDESV 174
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
+D T ++ V+ A+ ++D + +I
Sbjct: 175 LDLVVAGTQD-AVLMVESEAKE--LNEDVMLGAVMFGHRGFQPVIDAI 219
>gi|138894789|ref|YP_001125242.1| polynucleotide phosphorylase/polyadenylase [Geobacillus
thermodenitrificans NG80-2]
gi|196247587|ref|ZP_03146289.1| Polyribonucleotide nucleotidyltransferase [Geobacillus sp. G11MC16]
gi|187610268|sp|A4IME3|PNP_GEOTN RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|134266302|gb|ABO66497.1| Polynucleotide phosphorylase PNPase [Geobacillus
thermodenitrificans NG80-2]
gi|196212371|gb|EDY07128.1| Polyribonucleotide nucleotidyltransferase [Geobacillus sp. G11MC16]
Length = 722
Score = 157 bits (396), Expect = 2e-36, Method: Composition-based stats.
Identities = 44/244 (18%), Positives = 85/244 (34%), Gaps = 18/244 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56
+R GR+ +++R +S + GS L G T +L+ T + ++ + +
Sbjct: 315 IRPDGRKVDEIRPLSSAVGILPRTHGSGLFTRGQTQVLSVCTLGALGDVQILDGLDLEES 374
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P S G R+ G RAL VV I +
Sbjct: 375 KRFMHHYNFPPFSVGETGPMRGPGRREIGHGALG----ERALEPVVPSEREFPYTIRLVS 430
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V++++G T A+I + +A+ D ++ + V + D
Sbjct: 431 EVLESNGSTSQASICASTLAMMDAGVPIKAPVAGIAMGLVKNED---------HYTILTD 481
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T G + +Q + ++D L A+ +++
Sbjct: 482 IQGIEDHLGDMDFKVAGTRKG-VTALQMDIKIKGLTRDILEEALQQARKGRLEILDHMMQ 540
Query: 237 VISN 240
+S
Sbjct: 541 TLSE 544
Score = 115 bits (288), Expect = 5e-24, Method: Composition-based stats.
Identities = 42/230 (18%), Positives = 84/230 (36%), Gaps = 26/230 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEK---VPMWIRNTKHGWITAEYGMLP 67
R + + ++K A G+ LV++GDT +L+TAT + V + + G +P
Sbjct: 15 RPLVIETGELAKQANGAALVRYGDTVVLSTATASREAKDVDFFPLTVNYEERLYAVGKIP 74
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R GR ++ R+I R +R + Q++ + D
Sbjct: 75 GGFIKR------EGRPSEKAILASRLIDRPIRPLFAEGFRNEVQVVSMVMSVDQDCSPEV 128
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
AA+ G+ VA +G +A + G + G +++ + D+
Sbjct: 129 AALIGSSVA-------------LTISDIPFEGPIAGVIVGRIDGQFVINPTVEQMEKSDM 175
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
T I V+ A+ ++ + + + LI Q+++
Sbjct: 176 HLIVAGTKD-AINMVEAGADEVP--EEVMLEAIMFGHEEVKRLIAFQEEI 222
>gi|303229604|ref|ZP_07316392.1| polyribonucleotide nucleotidyltransferase [Veillonella atypica
ACS-134-V-Col7a]
gi|302515729|gb|EFL57683.1| polyribonucleotide nucleotidyltransferase [Veillonella atypica
ACS-134-V-Col7a]
Length = 689
Score = 156 bits (395), Expect = 2e-36, Method: Composition-based stats.
Identities = 47/244 (19%), Positives = 89/244 (36%), Gaps = 18/244 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
+R GR+ +++R IS V GS L G T +L AT+ E++ I
Sbjct: 309 IRPDGRKLDEVRPISCRTGVLPRTHGSGLFTRGQTQVLNVATVAPLSEKQTIDGIGLETE 368
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y S G R+ G RAL V+ + +
Sbjct: 369 KRYIHHYNFPSFSVGETRSSRGPGRREIGHGAL----AERALVPVIPSEEEFPYALRLVS 424
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V++++G + A++ G+ ++L D ++ + V +G + D
Sbjct: 425 EVLESNGSSSMASVCGSTLSLMDAGVPIKAPVAGIAMGLVTQGE---------HYTILTD 475
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED+ D+D T G + +Q + + S++ L A ++ + D
Sbjct: 476 IQGMEDALGDMDFKVAGTAKG-VTAIQMDIKISGLSREILHEALEQAHKGRMHIMGIMLD 534
Query: 237 VISN 240
I+
Sbjct: 535 TIAE 538
Score = 111 bits (276), Expect = 1e-22, Method: Composition-based stats.
Identities = 42/230 (18%), Positives = 83/230 (36%), Gaps = 26/230 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEK---VPMWIRNTKHGWITAEYGMLP 67
R +++ ++K A G+ +V +GDT +L TAT ++ + + + G LP
Sbjct: 11 RTLTIETGELAKQAGGAVMVGYGDTRVLVTATGSKEAKDIDFFPLTVDYEEKMYAIGRLP 70
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R R + R+I R +R + D ++ + D
Sbjct: 71 GGFIKR------EARPPESAILNSRLIDRPIRPLFDKGVRNEVHVVATVMSVDQDCDPAI 124
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
+ GA A G +A + G + G +V+ + D+
Sbjct: 125 CGMIGASAA-------------LSISDIPWAGPIAGVRMGRVNGEFVVNPTKAQLEETDL 171
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
+ T I+ V+G A+ ++ ++ A + I ++ Q+DV
Sbjct: 172 NIVVAGTKD-AILMVEGGAQEVP--EETILEVIMAAHEEIKKIVAFQEDV 218
>gi|303232084|ref|ZP_07318787.1| polyribonucleotide nucleotidyltransferase [Veillonella atypica
ACS-049-V-Sch6]
gi|302513190|gb|EFL55229.1| polyribonucleotide nucleotidyltransferase [Veillonella atypica
ACS-049-V-Sch6]
Length = 689
Score = 156 bits (395), Expect = 2e-36, Method: Composition-based stats.
Identities = 47/244 (19%), Positives = 89/244 (36%), Gaps = 18/244 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
+R GR+ +++R IS V GS L G T +L AT+ E++ I
Sbjct: 309 IRPDGRKLDEVRPISCRTGVLPRTHGSGLFTRGQTQVLNVATVAPLSEKQTIDGIGLETE 368
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y S G R+ G RAL V+ + +
Sbjct: 369 KRYIHHYNFPSFSVGETRSSRGPGRREIGHGAL----AERALVPVIPSEEEFPYALRLVS 424
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V++++G + A++ G+ ++L D ++ + V +G + D
Sbjct: 425 EVLESNGSSSMASVCGSTLSLMDAGVPIKAPVAGIAMGLVTQGE---------HYTILTD 475
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED+ D+D T G + +Q + + S++ L A ++ + D
Sbjct: 476 IQGMEDALGDMDFKVAGTAKG-VTAIQMDIKISGLSREILHEALEQAHKGRMHIMGIMLD 534
Query: 237 VISN 240
I+
Sbjct: 535 TIAE 538
Score = 111 bits (276), Expect = 1e-22, Method: Composition-based stats.
Identities = 42/230 (18%), Positives = 83/230 (36%), Gaps = 26/230 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEK---VPMWIRNTKHGWITAEYGMLP 67
R +++ ++K A G+ +V +GDT +L TAT ++ + + + G LP
Sbjct: 11 RTLTIETGELAKQAGGAVMVGYGDTRVLVTATGSKEAKDIDFFPLTVDYEEKMYAIGRLP 70
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R R + R+I R +R + D ++ + D
Sbjct: 71 GGFIKR------EARPPESAILNSRLIDRPIRPLFDKGVRNEVHVVATVMSVDQDCDPAI 124
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
+ GA A G +A + G + G +V+ + D+
Sbjct: 125 CGMIGASAA-------------LSISDIPWAGPIAGVRMGRVNGEFVVNPTKAQLEETDL 171
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
+ T I+ V+G A+ ++ ++ A + I ++ Q+DV
Sbjct: 172 NIVVAGTKD-AILMVEGGAQEVP--EETILEVIMAAHEEIKKIVAFQEDV 218
>gi|325921391|ref|ZP_08183248.1| polyribonucleotide nucleotidyltransferase (polynucleotide
phosphorylase) [Xanthomonas gardneri ATCC 19865]
gi|325548149|gb|EGD19146.1| polyribonucleotide nucleotidyltransferase (polynucleotide
phosphorylase) [Xanthomonas gardneri ATCC 19865]
Length = 704
Score = 156 bits (395), Expect = 2e-36, Method: Composition-based stats.
Identities = 41/242 (16%), Positives = 85/242 (35%), Gaps = 18/242 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
+R+ GR + +R IS+ + GS L G+T + TL + +V +
Sbjct: 315 VRIDGRALDTVRPISVQAGILPRTHGSALFTRGETQAIVVTTLGTARDGQVIDAVSGEYK 374
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P S G + A R+ G + R + +V+ I +
Sbjct: 375 ENFLFHYNFPPYSVGECGRFGAPKRREIGHGRL----AKRGVLAVMPSLEEFPYTIRVVS 430
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
++ +++G + A++ G+ +AL D ++ + V + +
Sbjct: 431 EITESNGSSSMASVCGSSLALMDAGVPVKAPVAGIAMGLVKEDDRFVVLSD--------- 481
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T G + +Q + +++ L AK ++
Sbjct: 482 ILGDEDHLGDMDFKVAGTAEG-VSALQMDIKIEGITEEIMKQALQQAKAGRLYILGEMSK 540
Query: 237 VI 238
+
Sbjct: 541 AL 542
Score = 93.0 bits (229), Expect = 3e-17, Method: Composition-based stats.
Identities = 45/228 (19%), Positives = 79/228 (34%), Gaps = 27/228 (11%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTKHGWITAEYGMLPR 68
++L +++ A G+ +VKF DT LL TA + E + + G +P
Sbjct: 15 VTLETGEIARQAGGAVIVKFDDTVLLVTAVAAKSAREGQDFFPLTVDYQEKFYAGGRIPG 74
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
R GR + I R+I R +R + QII + D A
Sbjct: 75 GFFKR------EGRATEKETLISRLIDRPIRPLFPEDYKNEVQIIATVMSMNPDIDGDIA 128
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+ GA AL G + A G G I++ E ++
Sbjct: 129 ALIGASAALSLAGT-------------PFNGPIGAAKVGYKNGEYILNPTISELKDSQLE 175
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
T + ++ V+ +E A S++ + + +I + +
Sbjct: 176 LVVAGTAN-AVLMVE--SEAALLSEEVMLGAVTFGHRELQKVINVINE 220
>gi|67459113|ref|YP_246737.1| polynucleotide phosphorylase/polyadenylase [Rickettsia felis
URRWXCal2]
gi|75536454|sp|Q4ULK1|PNP_RICFE RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|67004646|gb|AAY61572.1| Polyribonucleotide nucleotidyltransferase [Rickettsia felis
URRWXCal2]
Length = 747
Score = 156 bits (395), Expect = 2e-36, Method: Composition-based stats.
Identities = 46/243 (18%), Positives = 87/243 (35%), Gaps = 18/243 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHG 57
R+ GR +R+I+ + A GS L G+T L + T L+E++ +
Sbjct: 316 RIDGRSTTDIRQIACEIGLLPSAHGSALFTRGETQSLVSTTFGTSLDEQIVDSLEGEYKE 375
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S + +A S R+ G + RA+ ++ I + +
Sbjct: 376 RFMLNYIFPPYSVNEAMPMKAPSRREVGHGKL----AWRAINPILPNKVQFPYSIRVVAE 431
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+++G + A + G+ +AL ++ + V +G A+ +
Sbjct: 432 TTESNGSSSMATVCGSSLALMYAGVPIKAPVAGIAMGLVKEGKKFAVLSD---------I 482
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T G I +Q + + L A+ +++ V
Sbjct: 483 LGDEDYFGDMDFKVAGTSEG-ITALQMDIKISGVDFKIMTVALEQARLGRLHILEQMNKV 541
Query: 238 ISN 240
IS
Sbjct: 542 ISK 544
Score = 93.0 bits (229), Expect = 3e-17, Method: Composition-based stats.
Identities = 39/233 (16%), Positives = 83/233 (35%), Gaps = 28/233 (12%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVP----MWIRNTKHGWITAEYGMLPR 68
+ L+ +++ A+G+ VK G++ LL TA + +K + + + G +P
Sbjct: 16 LELSTGKIARQADGAVTVKMGNSVLLCTAVVAKKAKEGIGFFPLTINYREMAYATGKIPG 75
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
R G+ R + R+I R +R + + + + +
Sbjct: 76 GFFKR------EGKASDREVLVSRLIDRPIRPLFHPAFVNETHVTCSVLSYDPETPVDIL 129
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
AI GA A VAA G++ G +++ T +D
Sbjct: 130 AIIGASAA-------------LSLSPAPYLEIVAASKVGLINGEFVLNPTLELLKTSQLD 176
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
T ++ V+ +E +++ + + +IK+ K+ ++ E
Sbjct: 177 LVVAGTSD-SVMMVE--SEAHLLAEEQMLEAVKFGFESFQPVIKIIKE-LAEE 225
>gi|328950321|ref|YP_004367656.1| Polyribonucleotide nucleotidyltransferase [Marinithermus
hydrothermalis DSM 14884]
gi|328450645|gb|AEB11546.1| Polyribonucleotide nucleotidyltransferase [Marinithermus
hydrothermalis DSM 14884]
Length = 722
Score = 156 bits (395), Expect = 2e-36, Method: Composition-based stats.
Identities = 50/241 (20%), Positives = 88/241 (36%), Gaps = 17/241 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R GR +R+I + V A GS + G+T +L T TL +E++ + +
Sbjct: 333 RADGRGPTDIRDIWIEVDVLPRAHGSAIFTRGETQVLGTVTLGTGRDEQIIDDLGIDESD 392
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P STG + S R+ G RALR V+ I I D
Sbjct: 393 PFLVHYNFPPYSTGEVKRLRGTSRREVGHGNL----AKRALRPVLPDKDAFPYTIRIVGD 448
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
V++++G + A +AL D ++ + V+ + D+
Sbjct: 449 VLESNGSSSMATTCAGCLALMDAGVPIKKPVAGIAMGLVM--------PETGEPVILTDI 500
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED+ D+D T G + +Q + + + L A+ ++ + V
Sbjct: 501 LGMEDALGDMDFKVTGTRDG-VTALQMDIKIKGLTPEIMRRALEQARQARLAILDQMEAV 559
Query: 238 I 238
+
Sbjct: 560 L 560
Score = 111 bits (278), Expect = 7e-23, Method: Composition-based stats.
Identities = 39/228 (17%), Positives = 73/228 (32%), Gaps = 26/228 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATL---EEKVPMWIRNTKHGWITAEYGMLP 67
RE+ + +K GS V++GDT ++ TA + + G +P
Sbjct: 28 RELVIETGKYAKQVSGSVWVRYGDTVVMATAQASPEPIEADFLPLTVEFEERHYAVGKIP 87
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
S R GR G ++ R+ R +R + Q+I+
Sbjct: 88 GSFMRR------EGRPGEKAILSARLTDRPIRPLFPKGFRHEVQVILTVLSADQANPPDV 141
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
+ +G +AA+ G + G +++ + D+
Sbjct: 142 LG-------------PTAASAALMLSDIPWEGPIAAVRVGRIDGQFVLNPTLQQLEHSDL 188
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
D + I+ V+ A +D L A I ++ LQ+
Sbjct: 189 DLVVAGSKD-AIIMVEAGANEVP--EDVLVEALEYAHQAIQPIVALQE 233
>gi|222151113|ref|YP_002560267.1| polyribonucleotide nucleotidyltransferase [Macrococcus caseolyticus
JCSC5402]
gi|254782726|sp|B9EBG0|PNP_MACCJ RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|222120236|dbj|BAH17571.1| polyribonucleotide nucleotidyltransferase [Macrococcus caseolyticus
JCSC5402]
Length = 703
Score = 156 bits (395), Expect = 2e-36, Method: Composition-based stats.
Identities = 48/244 (19%), Positives = 87/244 (35%), Gaps = 18/244 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56
+R GR+ +++R + + GS L G T L+ AT E ++ + +
Sbjct: 314 VRPDGRRPDEIRPLDSEVGILPRVHGSGLFTRGQTQALSVATLGALGEHQIIDGLGVEEE 373
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y S G A R+ G RAL V+ I +
Sbjct: 374 KRYMHHYNFPNFSVGETGPIRAPGRREIGHGALG----ERALLQVIPDEKEFPYTIRVVS 429
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V++++G + A+I G+ +AL D ++ + V K + D
Sbjct: 430 EVLESNGSSSQASICGSTLALMDAGVPIKAPVAGIAMGLVTKDE---------NYTILSD 480
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED+ D+D T G I +Q + ++D L A+ +++
Sbjct: 481 IQGMEDALGDMDFKVAGTKEG-ITAIQMDIKINGLTEDILREALEQARVGRLHIMEHMLS 539
Query: 237 VISN 240
IS
Sbjct: 540 TISE 543
Score = 109 bits (273), Expect = 2e-22, Method: Composition-based stats.
Identities = 45/233 (19%), Positives = 85/233 (36%), Gaps = 26/233 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATL---EEKVPMWIRNTKHGWITAEYGMLP 67
R + + ++K A G+ LV++GDT +L+TAT V + + G +P
Sbjct: 15 RPLIIETGQLAKQANGAVLVRYGDTVVLSTATASKEPRDVDFFPLMVNYEEKLYAAGKIP 74
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R GR G + R+I R +R + Q+I + D
Sbjct: 75 GGFNKR------EGRPGEDATLTSRLIDRPIRPLFPKGYRHDVQVISIVMSVDPDNSPEM 128
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
AA+ G+ +A +G +A ++ G++ G I++ D + +
Sbjct: 129 AAMIGSSMA-------------LAVSDIPFEGPIAGVNVGLVDGELIINPDVQQREVSVL 175
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
D + V+ A+ +D + I L++ Q+ +I
Sbjct: 176 DLQVAG-HFDAVNMVEAGAKEVA--EDKMLEAIMFGHAEIKKLVEFQQSIIDE 225
>gi|78189646|ref|YP_379984.1| polynucleotide phosphorylase/polyadenylase [Chlorobium
chlorochromatii CaD3]
gi|123579359|sp|Q3APY4|PNP_CHLCH RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|78171845|gb|ABB28941.1| RNA binding S1 [Chlorobium chlorochromatii CaD3]
Length = 728
Score = 156 bits (395), Expect = 2e-36, Method: Composition-based stats.
Identities = 48/241 (19%), Positives = 86/241 (35%), Gaps = 18/241 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVP----MWIRNTKHG 57
RL GR +Q+R I++ + A GS L G+T L T TL + + N+
Sbjct: 332 RLDGRALDQVRPITIELGLIPRAHGSALFTRGETQALVTLTLGTQKDAQSVDNLTNSDDK 391
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + ++ R+ G R+++ V A I I D
Sbjct: 392 RFYLHYNFPPFSVGECGRLGSIGRREIGHGNL----AERSIKMVAPTEAEFPYTIRIVSD 447
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+++++G + A++ G +AL D + + + + + A+ +
Sbjct: 448 ILESNGSSSMASVCGGTLALMDGGVPIRKPVSGIAMGLIKENDKYAVLSD---------I 498
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T G I Q + L A+ ++ +
Sbjct: 499 LGNEDHLGDMDFKVSGTRDG-ITACQMDIKIDGLDYHIVENALEQARKGRLHILNEMEKA 557
Query: 238 I 238
I
Sbjct: 558 I 558
Score = 111 bits (277), Expect = 9e-23, Method: Composition-based stats.
Identities = 45/231 (19%), Positives = 77/231 (33%), Gaps = 20/231 (8%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRST 70
R +S+ ++K A+G+ +V+ GDT +L T +K P + EY +
Sbjct: 13 RILSIETGKMAKQADGAAIVRLGDTMVLATVVSSKKTP--PLGQDFFPLQVEYREKYSAA 70
Query: 71 GNRVKREAVSG-RQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAA 129
G R + R+I RALR + QIII
Sbjct: 71 GRFPGGFFKREGRPSEKEILSARLIDRALRPLFPDGYYYETQIIISVISSDQVNDGDVLG 130
Query: 130 ITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDA 189
A A+ + ++ + G + G I++ D E D+D
Sbjct: 131 GLAASAAIM-------------VSDIPFQNPMSEVRVGRVNGLYIINPDVNELKESDIDM 177
Query: 190 NFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
T+ I ++ E S+ + I L LQ++V +
Sbjct: 178 CIGGTND-TICMLE--GEMNEISETEMLEAIQFGHTAIRKLCVLQQEVAAE 225
>gi|299133369|ref|ZP_07026564.1| polyribonucleotide nucleotidyltransferase [Afipia sp. 1NLS2]
gi|298593506|gb|EFI53706.1| polyribonucleotide nucleotidyltransferase [Afipia sp. 1NLS2]
Length = 714
Score = 156 bits (395), Expect = 2e-36, Method: Composition-based stats.
Identities = 48/242 (19%), Positives = 90/242 (37%), Gaps = 18/242 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
+R+ GR +R I V A GS L G+T L TL +E+ + T
Sbjct: 315 LRIDGRDVKTVRPIVAEVGVLPRAHGSALFTRGETQALVVTTLGTGEDEQYIDALSGTYK 374
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P S G + + R+ G + RA+ V+ + +
Sbjct: 375 ETFLLHYNFPPFSVGETGRIGSPGRREIGHGKL----AWRAIHPVLPAHHEFPYTLRVVS 430
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
++ +++G + A + G+ +AL D ++ + + +L+G A+
Sbjct: 431 EITESNGSSSMATVCGSSLALMDAGVPLKRPTAGIAMGLILEGSRFAVLSD--------- 481
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D TD G + +Q + A +++ L AKD ++
Sbjct: 482 ILGDEDHLGDMDFKVAGTDKG-VTSLQMDIKIAGITEEIMKIALTQAKDGRIHILGEMAK 540
Query: 237 VI 238
+
Sbjct: 541 AL 542
Score = 106 bits (263), Expect = 4e-21, Method: Composition-based stats.
Identities = 36/238 (15%), Positives = 74/238 (31%), Gaps = 31/238 (13%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTKHGWITAEYGML 66
R + L V++ A+G+ + +G+T ++ T T +E + + T G +
Sbjct: 14 RPLKLETGKVARQADGAVIATYGETVVIATVVSAKTPKEGIDFLPLTVNYQEKTFAAGRI 73
Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
P R GR + + R+I R +R + Q+I+ +
Sbjct: 74 PGGYFKR------EGRPSEKETLVSRLIDRPIRPLFIKGYRCDTQVIVTTLSHDMENDPD 127
Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
A+ A A G + A + I++ E +
Sbjct: 128 IVAMVAASAA-------------LTLSGVPFMGPIGAARVAFVNNEFILNPTLDEMADTQ 174
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR----IADLIKLQKDVISN 240
+D T ++ V+ A+ ++ + I +I L +
Sbjct: 175 LDLVVAGTAD-AVLMVESEAKE--LPEEVMLGAVMFGHRHFQPVIKAIIDLAEKAAKE 229
>gi|241663489|ref|YP_002981849.1| polynucleotide phosphorylase/polyadenylase [Ralstonia pickettii
12D]
gi|240865516|gb|ACS63177.1| Polyribonucleotide nucleotidyltransferase [Ralstonia pickettii 12D]
Length = 724
Score = 156 bits (395), Expect = 2e-36, Method: Composition-based stats.
Identities = 49/242 (20%), Positives = 95/242 (39%), Gaps = 18/242 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +R I + V A GS L G+T L ATL +E++ ++
Sbjct: 317 RIDGRDTRTVRPIEIRSSVLPRAHGSALFTRGETQALVVATLGTKSDEQIIDALQGEYRD 376
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y M P +TG + + R+ G + RAL V+ + I + +
Sbjct: 377 RFMLHYNMPPFATGETGRVGSPKRREVGHGRL----AKRALIPVLPKDDEFAYTIRLVSE 432
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ G +AL D ++ + +L+ + A+ +
Sbjct: 433 ITESNGSSSMASVCGGSLALMDAGVPLKAHVAGVAMGLILEDNKFAVLTD---------I 483
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D TD+G I +Q + +++ L AK+ ++ +
Sbjct: 484 LGDEDHLGDMDFKVAGTDAG-ITALQMDIKVQGITKEIMQVALAQAKEGRLHILGKMRAA 542
Query: 238 IS 239
+
Sbjct: 543 MG 544
Score = 94.9 bits (234), Expect = 8e-18, Method: Composition-based stats.
Identities = 36/233 (15%), Positives = 78/233 (33%), Gaps = 27/233 (11%)
Query: 13 EISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT----KHGWITAEYGMLP 67
++ + +++ A G+ L+ DT +L T + + T G +P
Sbjct: 17 KVRMETGEIARQASGAVLLDMDDTVVLATVVGAKNPKPGQDFFPLTVDYLEKTYAAGKIP 76
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R GR R+I R LR + Q++I + +
Sbjct: 77 GGFFKR------EGRPSENETLTSRLIDRPLRPLFPEGFYNEVQVVIHVLSMNPEVPADI 130
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
A+ A AL G V A G G +++ + + + D+
Sbjct: 131 PALVAASAALAVSG-------------LPFNGPVGAARVGYKDGQYLLNPNRAQLAHSDL 177
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
D T+ ++ V+ A++ S++ + +++ I +++ +
Sbjct: 178 DLVVAGTER-AVLMVESEAQQ--LSEEVMLGAVVYGHEQMQIAINAIHELVRD 227
>gi|317121863|ref|YP_004101866.1| polyribonucleotide nucleotidyltransferase [Thermaerobacter
marianensis DSM 12885]
gi|315591843|gb|ADU51139.1| polyribonucleotide nucleotidyltransferase [Thermaerobacter
marianensis DSM 12885]
Length = 752
Score = 156 bits (395), Expect = 2e-36, Method: Composition-based stats.
Identities = 52/243 (21%), Positives = 92/243 (37%), Gaps = 19/243 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT-----K 55
+R GR+ +++R I + + A GS L + G T +LT A+L + +T +
Sbjct: 320 IRPDGRRPDEIRPIHVEVGLLPRAHGSGLFQRGQTQVLTVASLGAPGDRQMLDTLGQIEE 379
Query: 56 HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115
Y P STG A S R+ G RAL V+ I +
Sbjct: 380 FKRYMHHYNFPPYSTGEVAPLRAPSRREIGHGAL----AERALVPVLPDELEFPYTIRLV 435
Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIV 175
+V+ ++G T A+ G+ +AL D ++ + + +G A+
Sbjct: 436 SEVLSSNGSTSMASTCGSTLALMDAGVPIKAPVAGVAMGLIKEGDRFAVLTD-------- 487
Query: 176 DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
+ ED D+D T G + +Q + A + L A+ +++
Sbjct: 488 -IQGIEDHLGDMDFKVAGTREG-VTAIQMDIKIAGVDRAVLETALEQARAGRLFILEKML 545
Query: 236 DVI 238
+VI
Sbjct: 546 EVI 548
Score = 108 bits (268), Expect = 9e-22, Method: Composition-based stats.
Identities = 50/240 (20%), Positives = 84/240 (35%), Gaps = 27/240 (11%)
Query: 6 RQENQMREISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEK----VPMWIRNTKHGWIT 60
R E R + + +++ A GS LV++GDT +L TAT ++ + +
Sbjct: 15 RTELAGRPLIVEIGQLAQQANGSALVRYGDTVILATATASKEPRQGIDFFPLRVDWEERL 74
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
G +P S R G+ R+ R+ R LR + QII+
Sbjct: 75 YAAGRIPGSFFRR------EGKPSERAILSGRLTDRPLRPLFPKGYRNDVQIIVTTLSYD 128
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
D A I GA VA G V A+ G+L G +++
Sbjct: 129 DDCSPEIAGIIGASVA-------------LGISDIPWNGPVGAVEVGLLDGELVINPTAA 175
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
+ +D T I V+ A + + + I L++ Q+ +I+
Sbjct: 176 QREHSRLDLTVAGTKD-AINMVEAGAHEVP--EATILDAIFRGHEEIKKLVEFQEAIIAQ 232
>gi|162452817|ref|YP_001615184.1| polynucleotide phosphorylase/polyadenylase [Sorangium cellulosum
'So ce 56']
gi|187611292|sp|A9F8Z2|PNP_SORC5 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|161163399|emb|CAN94704.1| polynucleotide phosphorylase [Sorangium cellulosum 'So ce 56']
Length = 757
Score = 156 bits (395), Expect = 2e-36, Method: Composition-based stats.
Identities = 45/241 (18%), Positives = 87/241 (36%), Gaps = 18/241 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +R I + GS L + G+T + T TL +E+ +
Sbjct: 316 RIDGRDGRSIRPIMCEVGLLPRVHGSALFQRGETQAIVTTTLGTSTDEQKIDGLMGETWK 375
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P STG R+ G RAL ++ I I +
Sbjct: 376 RFYLHYNFPPFSTGETKPLRGPGRREIGHGAL----AERALSRMIPAPDQFPYTIRIVSE 431
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
++++G + AA+ G ++L D ++ + +++G+ A+ +
Sbjct: 432 TLESNGSSSMAAVCGGCLSLMDAGVPIKSPVAGIAMGLIMEGNKYAVLSD---------I 482
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T G + +Q + A S+ L+ A++ ++ +
Sbjct: 483 LGDEDHLGDMDFKVCGTARG-VTAIQMDIKIAGLSRQILAQALDQAREGRLHILGKMLET 541
Query: 238 I 238
+
Sbjct: 542 L 542
Score = 106 bits (264), Expect = 3e-21, Method: Composition-based stats.
Identities = 51/229 (22%), Positives = 79/229 (34%), Gaps = 26/229 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVP---MWIRNTKHGWITAEYGMLP 67
R ++L ++K A G+ LV +GDT +L TA +++ P + + T G +P
Sbjct: 12 RALTLETGRLAKQAHGAVLVTYGDTMVLVTAVSQDERPGLDFFPLTCEFVEKTYAAGKIP 71
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R RQ R++ R LR + QII
Sbjct: 72 GGFFKR------EARQREEEILSSRLMDRPLRPLFPEGFKRDTQIIATVLSSDKQNKADV 125
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
A+TGA ALH G V + G L G + + D+
Sbjct: 126 LALTGASAALH-------------ISDIPWHGPVVGVRVGRLDGEFVAYPTVADIERCDI 172
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
D + IV V+G A A ++ L A + +I L +
Sbjct: 173 DLVVACSRD-AIVMVEGGAAEA--TEAEIIDALMFAHETAQPVIDLIEK 218
>gi|258651924|ref|YP_003201080.1| ribonuclease PH [Nakamurella multipartita DSM 44233]
gi|258555149|gb|ACV78091.1| ribonuclease PH [Nakamurella multipartita DSM 44233]
Length = 246
Score = 156 bits (395), Expect = 2e-36, Method: Composition-based stats.
Identities = 109/238 (45%), Positives = 156/238 (65%), Gaps = 1/238 (0%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R GR ++++R ++ TR ++ GS LV+FG T +L A++ VP W + + GW+TA
Sbjct: 3 RADGRADHELRPVTFTRGFQQHPAGSVLVEFGGTKVLCAASVTTGVPRWRKGSGLGWLTA 62
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
EY MLP +T R RE+V GR GGR+ EI R+IGR+LR+ +DL +LG I +DCDV+QA
Sbjct: 63 EYAMLPSATHERSDRESVKGRVGGRTHEISRLIGRSLRACLDLRSLGENTIAVDCDVLQA 122
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
DGGTRTAAITGA+VAL D + ++ + Q L +AA+S G++ G +DL Y E
Sbjct: 123 DGGTRTAAITGAYVALADAVAYLRERGQLAD-PQPLSCQIAAVSVGVVGGRVRLDLPYEE 181
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
D+ +VD N V TD G +VEVQG+AE AT+S+ AML+ A IA L ++Q+ ++
Sbjct: 182 DARAEVDMNVVATDVGTLVEVQGTAEGATYSRSTLDAMLDSALAGIATLTEMQRAALA 239
>gi|146308619|ref|YP_001189084.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas mendocina
ymp]
gi|145576820|gb|ABP86352.1| Polyribonucleotide nucleotidyltransferase [Pseudomonas mendocina
ymp]
Length = 725
Score = 156 bits (395), Expect = 2e-36, Method: Composition-based stats.
Identities = 47/243 (19%), Positives = 89/243 (36%), Gaps = 18/243 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +R + + V GS L G+T L ATL + ++ + K
Sbjct: 340 RIDGRDTRTVRPLKIEVGVLDKTHGSALFTRGETQALVVATLGTARDAQLLDTLEGEKKD 399
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + R+ G + R + +++ I + +
Sbjct: 400 PFMLHYNFPPFSVGECGRMGGAGRREIGHGRL----ARRGVAAMLPKDDEFPYTIRVVSE 455
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ GA +AL D M+ + VL+G A+ +
Sbjct: 456 ITESNGSSSMASVCGASLALMDAGVPMKAPVAGIAMGLVLEGEKFAVLTD---------I 506
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T G + +Q + +++ L A + +++ V
Sbjct: 507 LGDEDHLGDMDFKVAGTAKG-VTALQMDIKIQGITEEIMEQALEQALEARLNILGQMNQV 565
Query: 238 ISN 240
IS
Sbjct: 566 ISQ 568
Score = 96.1 bits (237), Expect = 4e-18, Method: Composition-based stats.
Identities = 32/230 (13%), Positives = 73/230 (31%), Gaps = 29/230 (12%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTH-LLTTATLEEKVPM----WIRNTKHGWITAEYGMLP 67
++L +++ A G+ LV + +L T + + + + T G +P
Sbjct: 38 VTLETGRIARQASGAVLVTVDNDVTVLVTVVGAKTADPSKGFFPLSVHYQEKTYAAGKIP 97
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R GR + R+I R +R + + Q++
Sbjct: 98 GGFFKR------EGRPSEKETLTSRLIDRPIRPLFPEGFMNEVQVVCTVVSTSKKTDPDI 151
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY-PIVDLDYGEDSTID 186
A++ G A G + A +++ +Y +
Sbjct: 152 ASMIGTSAA-------------LAVSGIPFNGPIGAARVAFHPDTGYLLNPNYEQLKASS 198
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+D T++ ++ V+ +E ++D + A +I+ K+
Sbjct: 199 LDMVVAGTET-AVLMVE--SEADELTEDQMLGAVLFAHQEFQAVIQAVKE 245
>gi|332298592|ref|YP_004440514.1| Polyribonucleotide nucleotidyltransferase [Treponema brennaborense
DSM 12168]
gi|332181695|gb|AEE17383.1| Polyribonucleotide nucleotidyltransferase [Treponema brennaborense
DSM 12168]
Length = 699
Score = 156 bits (395), Expect = 2e-36, Method: Composition-based stats.
Identities = 48/244 (19%), Positives = 85/244 (34%), Gaps = 16/244 (6%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56
+R+ GR +R IS V GS + G+T L AT L+E+V I +
Sbjct: 313 VRVDGRGTEDIRPISCEIDVLPRPHGSAIFTRGETQSLAVATLGTALDEQVYDDIDGDRR 372
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P S G + R+ G R+L +V I +
Sbjct: 373 EHFILHYNFPPYSVGEVGRMGTGR-REIGHGNL----ARRSLEPMVPSREAFPYTIRVVS 427
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
++++++G + A++ G + + M+ + + +G + D
Sbjct: 428 EIMESNGSSSMASVCGGTLCMLAAGVPMKKPVAGIAMGLITEGDKYE------KYAILSD 481
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T G I Q + A + + L AK ++ +
Sbjct: 482 ILGEEDHLGDMDFKVAGTADG-ITGFQMDIKIAGVTTEIMQKALAQAKRGRLHILGIMNQ 540
Query: 237 VISN 240
IS
Sbjct: 541 TISK 544
Score = 89.9 bits (221), Expect = 3e-16, Method: Composition-based stats.
Identities = 40/229 (17%), Positives = 79/229 (34%), Gaps = 27/229 (11%)
Query: 13 EISLTRR-VSKYAEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTKHGWITAEYGMLP 67
E+ L ++K A G+ +FG + ++ TA T +E + + G +P
Sbjct: 13 ELILETGRLAKQANGAVYAQFGGSAVIATACASGTAQEGLDFVPVTVDYNEKYYAAGKIP 72
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R GR + + R+I R +R + +++ QI+ C
Sbjct: 73 GGFIKR------EGRPKDKEILVSRLIDRPMRPLFEVAFGREIQIVPTCVSSDQINPPDM 126
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
L + + G +A + + G +++ Y + ++
Sbjct: 127 -------------LAVVASSAAVVISDIPFNGPIAGVRVAYVDGDYVLNPTYAQIEKAEL 173
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ T G V+G A S+D L A++ I + LQ +
Sbjct: 174 EIVVAGTADG-FTMVEGGANE--VSEDVMLGALAKAQEFITAMCGLQNE 219
>gi|300113661|ref|YP_003760236.1| polyribonucleotide nucleotidyltransferase [Nitrosococcus watsonii
C-113]
gi|299539598|gb|ADJ27915.1| polyribonucleotide nucleotidyltransferase [Nitrosococcus watsonii
C-113]
Length = 695
Score = 156 bits (395), Expect = 2e-36, Method: Composition-based stats.
Identities = 44/242 (18%), Positives = 89/242 (36%), Gaps = 18/242 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +R IS+T + GS L G+T L TL + +V I +
Sbjct: 315 RIDGRDTTAIRPISITTGLLPRTHGSALFTRGETQSLVATTLGTERDAQVIDAIEGERRE 374
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P G + R+ G + R+L +VV I + +
Sbjct: 375 RFMLHYNFPPYCVGETGFVGSPKRREIGHGRL----AKRSLNAVVPDEESFPYVIRVVSE 430
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A + G ++L D ++ + + + A+ +
Sbjct: 431 ITESNGSSSMATVCGTSLSLMDAGVPIKAPVAGIAMGLIKEADRFAVLSD---------I 481
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T+ G + +Q + +++ L A++ +++ ++
Sbjct: 482 LGDEDHLGDMDFKVAGTEKG-VTALQMDIKIDGITEEIMRTALTQAREGRFHILQKMNEI 540
Query: 238 IS 239
IS
Sbjct: 541 IS 542
Score = 108 bits (270), Expect = 5e-22, Method: Composition-based stats.
Identities = 36/235 (15%), Positives = 82/235 (34%), Gaps = 28/235 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKHGWITAEYGML 66
R + L +++ A G+ +V++G+T +L T E + + T G +
Sbjct: 13 RPLILETGCIARQASGAVVVRYGETVVLVTVVGMKEAVEGRDFFPLTVNYQERTYAAGKI 72
Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
P R GR + R+I R LR + + + Q+I ++
Sbjct: 73 PGGFFKR------EGRPTEKETLTSRLIDRPLRPLFPKNFVNEVQVIATVISSDSENDPD 126
Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
++ GA A +AA G + G +++ +
Sbjct: 127 IPSLIGASAA-------------LTLSGIPFATPIAAARVGYIDGQYVLNPTLSQMEESA 173
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
+D T+ ++ V+ A+ ++ + + ++I+ ++ ++ E
Sbjct: 174 LDLVVAGTEK-AVLMVESEAQE--LPEEIMLGSVMFGHQEMQEVIQTIRE-LAEE 224
>gi|254787145|ref|YP_003074574.1| polynucleotide phosphorylase/polyadenylase [Teredinibacter turnerae
T7901]
gi|259534168|sp|C5BPV5|PNP_TERTT RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|237684870|gb|ACR12134.1| polyribonucleotide nucleotidyltransferase [Teredinibacter turnerae
T7901]
Length = 705
Score = 156 bits (395), Expect = 2e-36, Method: Composition-based stats.
Identities = 41/243 (16%), Positives = 87/243 (35%), Gaps = 18/243 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +R + + V GS L G+T L ATL + ++ +
Sbjct: 315 RIDGRDTKTVRPLQVEVGVLPKVHGSALFTRGETQALVVATLGSARDAQIIDALEGEHRD 374
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + A R+ G + R + +++ + + +
Sbjct: 375 NFMLHYNFPPYSVGECGRMGATGRREIGHGRL----ARRGVAAMLPKEDQFPYTMRVVSE 430
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ G+ +AL D ++ + V + + A+ +
Sbjct: 431 ITESNGSSSMASVCGSSLALMDAGVPLKAPVAGIAMGLVKEENGFAVLTD---------I 481
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T +G + +Q + +++ L A ++ V
Sbjct: 482 LGDEDHLGDMDFKVAGTANG-VTALQMDIKIEGITEEIMETALEQALHARLHILSEMNAV 540
Query: 238 ISN 240
I+
Sbjct: 541 IAQ 543
Score = 106 bits (265), Expect = 2e-21, Method: Composition-based stats.
Identities = 33/229 (14%), Positives = 70/229 (30%), Gaps = 28/229 (12%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT----KHGWITAEYGMLPR 68
I+L +++ A G+ L G T +L T ++ + G +P
Sbjct: 15 ITLETGRIARQATGAVLASMGKTSVLCTVVGAKEASPGQDFFPLSVHYQEKAYAAGKIPG 74
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
R GR + R+I R +R + + Q++ + D
Sbjct: 75 GFFKR------EGRPSEKETLTSRLIDRPIRPLFPDGFVNEVQVVCTVVAAEKDVDPDIC 128
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY-PIVDLDYGEDSTIDV 187
A+ G A G + A G +++ Y ++ ++
Sbjct: 129 AMIGTSAA-------------LAISGIPFNGPIGAARVGYTQADGYLLNPTYQALASSEL 175
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
D T ++ V+ A +D + A + +++ +
Sbjct: 176 DMVVAGTQD-AVLMVESEANE--LPEDIMLGAVLYAHQEMQAVVQAVNE 221
>gi|146278950|ref|YP_001169109.1| polynucleotide phosphorylase/polyadenylase [Rhodobacter sphaeroides
ATCC 17025]
gi|145557191|gb|ABP71804.1| Polyribonucleotide nucleotidyltransferase [Rhodobacter sphaeroides
ATCC 17025]
Length = 740
Score = 156 bits (395), Expect = 2e-36, Method: Composition-based stats.
Identities = 46/243 (18%), Positives = 89/243 (36%), Gaps = 17/243 (6%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +R I V GS L G+T L TL +E++ +
Sbjct: 344 RIDGRDTKTVRPIISETSVLPRTHGSALFTRGETQALVVTTLGTGEDEQIIDALHGNSRS 403
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + R+ G + RAL++V+ + I + +
Sbjct: 404 NFLLHYNFPPYSVGEVGRFGPPGRREIGHGKL----AWRALQAVLPAATDFPYTIRVVSE 459
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ G +++ D ++ + +L+ + D+
Sbjct: 460 ITESNGSSSMASVCGGSLSMMDAGVPLKAPVAGVAMGLILEDD--------GKWAVLTDI 511
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T++G I +Q + A + L AKD ++
Sbjct: 512 LGDEDHLGDMDFKVAGTENG-ITSLQMDIKVAGITPAIMEQALAQAKDGRMHILGEMSKA 570
Query: 238 ISN 240
+S+
Sbjct: 571 LSS 573
Score = 101 bits (250), Expect = 1e-19, Method: Composition-based stats.
Identities = 29/228 (12%), Positives = 61/228 (26%), Gaps = 25/228 (10%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGN 72
++L V++ A+GS + G+T ++ T + E
Sbjct: 42 LTLETGKVARQADGSVIATLGETSVMANVTFAKAAKPGQDFFPLTVHYQERYYAAGKVP- 100
Query: 73 RVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITG 132
R + R+I R +R + +I+ A+
Sbjct: 101 -GGFFKREARPSEKETLTSRLIDRPIRPLFVDGFKNEVLLIVTVLSHDLVNEPDIVAMIA 159
Query: 133 AWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDST------ID 186
A A G + A G G +++ D +
Sbjct: 160 ASAA-------------LTISGVPFMGPIGAARVGYANGEYVLNPDVDDMQKLRENPEQR 206
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
+D T ++ V+ A S+ + + + +I +
Sbjct: 207 LDLVIAGTKD-AVMMVESEAYE--LSEAEMLGAVKFGHEAMQPVIDMI 251
>gi|110678016|ref|YP_681023.1| polynucleotide phosphorylase/polyadenylase [Roseobacter
denitrificans OCh 114]
gi|123065912|sp|Q16CF6|PNP_ROSDO RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|109454132|gb|ABG30337.1| polyribonucleotide nucleotidyltransferase [Roseobacter
denitrificans OCh 114]
Length = 711
Score = 156 bits (395), Expect = 2e-36, Method: Composition-based stats.
Identities = 43/241 (17%), Positives = 91/241 (37%), Gaps = 17/241 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR+ +++R+I + GS L G+T L TL +E+ +
Sbjct: 318 RIDGRKTDEIRDIVCETGLLPRTHGSALFTRGETQGLVVTTLGTGDDEQFIDALHGNFKS 377
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + R+ G + RAL++V+ + + + +
Sbjct: 378 NFLLHYNFPPYSVGEAGRVGPPGRREIGHGKL----AWRALQAVLPAATDFPYTVRVVSE 433
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ G +++ D ++ + +L+ + + D+
Sbjct: 434 ITESNGSSSMASVCGGSLSMMDAGVPLKAPVAGVAMGLILEEDGS--------YAILSDI 485
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T++G I +Q + A + + L AK ++
Sbjct: 486 LGDEDHLGDMDFKVAGTEAG-ITSLQMDIKIAGITPEIMEKALEQAKAGRIHILGEMAKS 544
Query: 238 I 238
I
Sbjct: 545 I 545
Score = 104 bits (260), Expect = 9e-21, Method: Composition-based stats.
Identities = 33/228 (14%), Positives = 61/228 (26%), Gaps = 25/228 (10%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGN 72
++L V++ A+GS + G+T ++ T +K E
Sbjct: 16 LTLETGKVARQADGSVIATLGETSVMANVTFAKKQKPGQDFFPLTVHYQEKYYAAGKVP- 74
Query: 73 RVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITG 132
R + R+I R LR + ++ A+
Sbjct: 75 -GGFFKREARPTEKETLTARLIDRPLRPLFVPGFKNEVLVMCTVLSHDLVNDPDMVAMIA 133
Query: 133 AWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDST------ID 186
A A G +A G G I++ +
Sbjct: 134 ASAA-------------LTISGAPFMGPIAGARVGFEDGEYILNPTVDDMQDLRLNPEQR 180
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
+D T ++ V+ A S+ + A D I ++ L
Sbjct: 181 LDLVVAGTKD-AVMMVESEAYE--LSEAEMLGAVKFAHDAIQPVLDLI 225
>gi|315185936|gb|EFU19700.1| polyribonucleotide nucleotidyltransferase [Spirochaeta thermophila
DSM 6578]
Length = 709
Score = 156 bits (395), Expect = 2e-36, Method: Composition-based stats.
Identities = 45/244 (18%), Positives = 82/244 (33%), Gaps = 19/244 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
+R GR +R I+ V GS L G+T L TL +E++ + K
Sbjct: 311 IRTDGRGPEDIRPITCEVGVLPRTHGSALFTRGETQALAITTLGTVFDEQIMDDLEGDKR 370
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P S G + R+ G RAL +V+ + +
Sbjct: 371 ENFMLHYNFPPFSVGEVGRLYTGR-REIGHGHL----AHRALEAVLPSKDDFPYTLRVVS 425
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
++++++G + A + G+ ++L + ++ + V G I
Sbjct: 426 EILESNGSSSMATVCGSTLSLLNAGVPIKKPVAGIAMGLVTDGERTVILSD--------- 476
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T+ G I Q + L A+ ++ +
Sbjct: 477 ILGEEDHFGDMDFKVAGTEEG-ITAFQMDIKIKNIDPATMRKALEQARRGRLHILGIMNQ 535
Query: 237 VISN 240
IS
Sbjct: 536 AISE 539
Score = 95.7 bits (236), Expect = 4e-18, Method: Composition-based stats.
Identities = 44/230 (19%), Positives = 82/230 (35%), Gaps = 27/230 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT----KHGWITAEYGML 66
RE+ LT +++ A G+ ++G T +L TA V + + G +
Sbjct: 12 RELVLTTGKMARQANGAVFAQYGGTCVLATACCGSDVKEDLDFIPLSVDYNEKYYAAGKI 71
Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
P R GR + + R+I R +R + + QII
Sbjct: 72 PGGFFKR------EGRPREKEILVSRLIDRPMRPLFSKAFKREIQIIPT----------- 114
Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
++ + D + + + G V A+ G++ G +++ +
Sbjct: 115 --TVSADQINTPDVVAIVAASAAVTVSDIPFDGPVGAVRVGLVDGTFVINPTLEQLEASA 172
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+D T G I V+G A+ S+D + +A+ I L K Q +
Sbjct: 173 LDIVVAGTLEG-ITMVEGGAKE--VSEDTLVEAIEIARGAIVSLCKAQLE 219
>gi|329120747|ref|ZP_08249409.1| polyribonucleotide nucleotidyltransferase [Neisseria bacilliformis
ATCC BAA-1200]
gi|327460544|gb|EGF06880.1| polyribonucleotide nucleotidyltransferase [Neisseria bacilliformis
ATCC BAA-1200]
Length = 701
Score = 156 bits (395), Expect = 2e-36, Method: Composition-based stats.
Identities = 46/241 (19%), Positives = 92/241 (38%), Gaps = 18/241 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +R I++ V GS L G+T L TL +E++ +
Sbjct: 316 RIDGRDTRTVRPINIQTNVLPRTHGSALFTRGETQALAVTTLGTQRDEQIIDALSGEYTD 375
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P STG + A R+ G + RAL +V+ S + + +
Sbjct: 376 RFMLHYNFPPYSTGECGRMGAPKRREIGHGRL----AKRALLAVLPEPEDFSYTMRVVSE 431
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ G ++L ++ + +L+G+ A+ +
Sbjct: 432 ITESNGSSSMASVCGGCLSLLSAGVPLKAHVAGIAMGLILEGNKFAVLTD---------I 482
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T G + +Q + +++ L AK+ ++ K+
Sbjct: 483 LGDEDHLGDMDFKVAGTTDG-VTALQMDIKIQGITKEIMQIALAQAKEARLHILGQMKEA 541
Query: 238 I 238
+
Sbjct: 542 V 542
Score = 95.3 bits (235), Expect = 6e-18, Method: Composition-based stats.
Identities = 38/234 (16%), Positives = 82/234 (35%), Gaps = 28/234 (11%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT----KHGWITAEYGMLPR 68
++L +++ A G+ V GDT +L T ++V + T G +P
Sbjct: 16 VTLETGEIARQAAGAVKVAMGDTVVLVAVTANKEVKAGQDFFPLTVDYLERTYAAGKIPG 75
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
R G+Q + R+I R +R + QI+ + + +
Sbjct: 76 GFFKR------EGKQSEKEILTSRLIDRPIRPLFPEGFYHDIQIVAMVVSVDPEIDSDIP 129
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+ GA A G + A G + G +++ + +D
Sbjct: 130 AMIGASAA-------------LVLSGVPFAGPIGAARVGYVDGGYVLNPTKTQLEKSQLD 176
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNEV 242
T+ ++ V+ A+ +D + +++ +I+ + +++EV
Sbjct: 177 LVVAGTEQ-AVLMVESEAQI--LPEDVMLGAVVYGHEQMQAVIRAINE-LADEV 226
>gi|163734274|ref|ZP_02141714.1| polyribonucleotide nucleotidyltransferase [Roseobacter litoralis
Och 149]
gi|161392282|gb|EDQ16611.1| polyribonucleotide nucleotidyltransferase [Roseobacter litoralis
Och 149]
Length = 711
Score = 156 bits (395), Expect = 2e-36, Method: Composition-based stats.
Identities = 43/241 (17%), Positives = 91/241 (37%), Gaps = 17/241 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR+ +++R+I + GS L G+T L TL +E+ +
Sbjct: 318 RIDGRKTDEIRDIVSETGLLPRTHGSALFTRGETQGLVVTTLGTGDDEQFIDALHGNFKS 377
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + R+ G + RAL++V+ + + + +
Sbjct: 378 NFLLHYNFPPYSVGEAGRVGPPGRREIGHGKL----AWRALQAVLPAATDFPYTVRVVSE 433
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ G +++ D ++ + +L+ + + D+
Sbjct: 434 ITESNGSSSMASVCGGSLSMMDAGVPLKAPVAGVAMGLILEEDGS--------YAILSDI 485
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T++G I +Q + A + + L AK ++
Sbjct: 486 LGDEDHLGDMDFKVAGTEAG-ITSLQMDIKIAGITPEIMEKALEQAKAGRIHILGEMAKA 544
Query: 238 I 238
I
Sbjct: 545 I 545
Score = 105 bits (262), Expect = 5e-21, Method: Composition-based stats.
Identities = 32/228 (14%), Positives = 61/228 (26%), Gaps = 25/228 (10%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGN 72
++L V++ A+GS + G+T ++ T +K E
Sbjct: 16 LTLETGKVARQADGSVIATLGETSVMANVTFAKKQKPGQDFFPLTVHYQEKYYAAGKVP- 74
Query: 73 RVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITG 132
R + R+I R LR + ++ A+
Sbjct: 75 -GGFFKREARPTEKETLTARLIDRPLRPLFVPGFKNEVLVMCTVLSHDLVNDPDMVAMIA 133
Query: 133 AWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDST------ID 186
A A G +A G G +++ +
Sbjct: 134 ASAA-------------LTISGAPFMGPIAGCRVGYEGGEYVLNPTVDDMQDLRLNPEQR 180
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
+D T ++ V+ A S+ + A D I ++ L
Sbjct: 181 LDLVVAGTKD-AVMMVESEAYE--LSEAEMLGAVKFAHDAIQPVLDLI 225
>gi|220931634|ref|YP_002508542.1| Polyribonucleotide nucleotidyltransferase [Halothermothrix orenii H
168]
gi|254782723|sp|B8CW78|PNP_HALOH RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|219992944|gb|ACL69547.1| Polyribonucleotide nucleotidyltransferase [Halothermothrix orenii H
168]
Length = 705
Score = 156 bits (395), Expect = 2e-36, Method: Composition-based stats.
Identities = 47/242 (19%), Positives = 89/242 (36%), Gaps = 18/242 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
+R GR+ +++R I GS + G T L+ TL +E++ + +
Sbjct: 320 IRPDGRKPDEIRPIWCEVGTLPRVHGSGVFTRGQTQALSVVTLGATSDEQILFGLGEEET 379
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P S G + R+ G RAL+ V+ I +
Sbjct: 380 KRYMHHYNFPPYSVGETSPLRSPGRREIGHGALG----ERALQPVIPDQEEFPYTIRVVS 435
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V++++G T A+I G+ +AL D +++ + + + I
Sbjct: 436 EVLESNGSTSQASICGSTLALMDAGVPIKEPVAGIAMGLLKEDEKVVILSD--------- 486
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T +G I +Q + S++ L A++ ++
Sbjct: 487 IQGLEDFYGDMDFKVAGTRNG-ITALQMDIKIHGISKEILKKALKRAREGRLYILDKMLQ 545
Query: 237 VI 238
VI
Sbjct: 546 VI 547
Score = 107 bits (267), Expect = 1e-21, Method: Composition-based stats.
Identities = 49/229 (21%), Positives = 83/229 (36%), Gaps = 26/229 (11%)
Query: 13 EISLTRR-VSKYAEGSCLVKFGDTHLLTTATLE---EKVPMWIRNTKHGWITAEYGMLPR 68
++ +K A GS + ++GDT +L TAT+ E + + + G +P
Sbjct: 13 KMKFETGKYAKQANGSVVARYGDTTVLVTATMSEPREGIDYFPLMVNYEERVYAIGKIPG 72
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
S R GR + R+I R LR + QII + D
Sbjct: 73 SITRR------EGRPRDVATLAARLIDRPLRPLFPEGFRHDVQIIATVLSVDNDCEPDIL 126
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+ GA VA G + + G++ G +++ D E +D
Sbjct: 127 ALNGASVA-------------LTLSDIPFDGPIGGVKVGLVDGELVINPDEEEREKSKLD 173
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
T ++ V+ A S+D + LA I L+ LQ+++
Sbjct: 174 LTVAGTRD-AVLMVEAGANE--VSEDVMLDAIELAHQEIKRLVLLQEEI 219
>gi|86739583|ref|YP_479983.1| ribonuclease PH [Frankia sp. CcI3]
gi|123765222|sp|Q2JEN8|RNPH_FRASC RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|86566445|gb|ABD10254.1| RNAse PH [Frankia sp. CcI3]
Length = 247
Score = 156 bits (395), Expect = 2e-36, Method: Composition-based stats.
Identities = 104/242 (42%), Positives = 148/242 (61%), Gaps = 7/242 (2%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+R GR+ +++R++++ R ++AEGS L+ G T +L A++ VP W + + GW+T
Sbjct: 2 IRADGRRPDELRQVTILRGWQEHAEGSALISAGRTRVLCAASVTTGVPRWRKGSGLGWVT 61
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEY MLPR+T R RE+V GR GR+ EI R+IGR+LR+ +DL ALG I IDCDV+
Sbjct: 62 AEYSMLPRATDTRNDRESVRGRISGRTHEISRLIGRSLRACIDLKALGENTIAIDCDVLL 121
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTAAITGA+VAL D + + V+A+S G++ G ++DL Y
Sbjct: 122 ADGGTRTAAITGAYVALVDAARWLGRPDAIITS-------VSAVSVGVVKGEAMLDLAYS 174
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
EDST D D N V T + VEVQG+AE F + ++L+LA A L +Q + +
Sbjct: 175 EDSTADTDMNVVCTGADGFVEVQGTAEGTPFDRTMLDSLLDLAVRGCAQLTAIQTEALRG 234
Query: 241 EV 242
V
Sbjct: 235 PV 236
>gi|312129691|ref|YP_003997031.1| polyribonucleotide nucleotidyltransferase [Leadbetterella
byssophila DSM 17132]
gi|311906237|gb|ADQ16678.1| polyribonucleotide nucleotidyltransferase [Leadbetterella
byssophila DSM 17132]
Length = 718
Score = 156 bits (395), Expect = 2e-36, Method: Composition-based stats.
Identities = 49/243 (20%), Positives = 88/243 (36%), Gaps = 16/243 (6%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHG 57
RL GR+ ++R I++ A GS L G+T L+T T L+E++ +
Sbjct: 317 RLDGRKLTEIRPITVEVDYLPSAHGSALFTRGETQSLSTTTLGTKLDEQIVDLPMVKGYS 376
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y STG V R+ G R+L V+ I + D
Sbjct: 377 KFYLHYNFPGFSTGEVRPNRGVGRREIGHGNL----AQRSLERVMPPEEENPYTIRVVSD 432
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+++++G + A + ++L D ++ + + + + D+
Sbjct: 433 ILESNGSSSMATVCAGCLSLMDAGVPIKAPVSGIAMGLITDPSTG-------KWAVLSDI 485
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T G IV Q + S D LN A++ ++ +V
Sbjct: 486 LGDEDHLGDMDFKVTGTAQG-IVACQMDIKIGGLSFDIIEKALNQAREGRLHILGKMTEV 544
Query: 238 ISN 240
+
Sbjct: 545 LEK 547
Score = 88.7 bits (218), Expect = 7e-16, Method: Composition-based stats.
Identities = 37/228 (16%), Positives = 73/228 (32%), Gaps = 27/228 (11%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKHGWITAEYGMLPR 68
I+L +++ A+G+ +++ G +L T E + + A G +P
Sbjct: 17 ITLETGKLARQADGAVVLRSGKLMMLATVCAAKTHKEGTDFLPLSVDYQEKFASNGKIPG 76
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
S R G+ I R+I RALR + Q+++ +
Sbjct: 77 SFQRR------EGKLSDNEILISRLIDRALRPIFPEDFHAEVQVMVTLHSADENIQPDA- 129
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
L + + G ++ + + G +++ D+D
Sbjct: 130 ------------LAALAASAAIMASDIPFNGPISEVRVAKINGEYVINPPVQAIGNADLD 177
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
T I+ V+ E S+ L A + I + QK+
Sbjct: 178 LIVAGTSD-SIIMVE--GESNEVSEIEMVEALRAAHEVIKLQVAAQKE 222
>gi|61216057|sp|Q8DLA4|RNPH_THEEB RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
Length = 242
Score = 156 bits (395), Expect = 2e-36, Method: Composition-based stats.
Identities = 101/238 (42%), Positives = 147/238 (61%), Gaps = 4/238 (1%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R GRQ ++R R +++A GS L + G T +L T + +E VP ++ T GW+TA
Sbjct: 5 RPDGRQPQELRSHQFQRHFTQFALGSVLAQAGQTQVLCTVSFKEGVPKFLEGTGQGWLTA 64
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
EY MLP +T R ++E + GR+QEIQR+IGR+LRS VDLS LG +I+D DV+QA
Sbjct: 65 EYRMLPSAT--RPRQEREFLKLSGRTQEIQRLIGRSLRSAVDLSLLGECTLIVDADVLQA 122
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
D GTR+ AITG ++AL D L + + L+ VAA+S G++ P +DL Y E
Sbjct: 123 DAGTRSLAITGGYIALVDALSALLQQGVLRKS--PLRHQVAAVSVGLIDDEPYLDLSYAE 180
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
D VD N VMT SG +EVQG+AE +F + +L++A+ I +LI++Q+ V++
Sbjct: 181 DVAASVDFNVVMTGSGQFIEVQGTAEMGSFDRGTLDRLLDVARQGIQELIEIQQRVLA 238
>gi|284044685|ref|YP_003395025.1| polyribonucleotide nucleotidyltransferase [Conexibacter woesei DSM
14684]
gi|283948906|gb|ADB51650.1| polyribonucleotide nucleotidyltransferase [Conexibacter woesei DSM
14684]
Length = 761
Score = 156 bits (395), Expect = 2e-36, Method: Composition-based stats.
Identities = 47/243 (19%), Positives = 88/243 (36%), Gaps = 18/243 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R GR+ +++R I++ V+ GS L G T L+TA+L EE +
Sbjct: 316 RPDGRRADEIRPITIEVGVTPRTHGSALFTRGQTQALSTASLGTTREEMRLDTLGLETRK 375
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
+ Y P S G R G RAL +V + I + D
Sbjct: 376 YYFHHYNFPPFSVGEAGFMRGPKRRDIGHGAL----AERALVPMVPSTEEFPYAIRVVSD 431
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+++++G + A++ G+ ++L D ++ + + +G + +
Sbjct: 432 ILESNGSSSMASVCGSSLSLMDAGVPLKRPVAGIAMGLIKEGDDYIVLSD---------I 482
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T G I +Q + + D L AK+ ++
Sbjct: 483 AGIEDHLGDMDFKVAGTSEG-ITALQMDIKITGVTFDILRDALAQAKEGREFILGKMATA 541
Query: 238 ISN 240
++
Sbjct: 542 LAK 544
Score = 99.1 bits (245), Expect = 4e-19, Method: Composition-based stats.
Identities = 49/233 (21%), Positives = 86/233 (36%), Gaps = 27/233 (11%)
Query: 13 EISLTRR-VSKYAEGSCLVKFGDTHLLTTATLE--EKVPMWIRNTKHGWITAEYGMLPRS 69
EIS ++K A G+ +V+ GDT +L+TAT V G +P S
Sbjct: 16 EISFETGRMAKQASGAVVVRSGDTMVLSTATAGNLRDVDFLPLTVDVEERMYAAGKIPGS 75
Query: 70 TGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAA 129
R GR G ++ RM+ R +R + Q++ + + A
Sbjct: 76 FFKR------EGRAGEKATLTARMVDRPIRPLFPKGWRRETQLVTLTLSVDHEHPYDVLA 129
Query: 130 ITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE-DSTIDVD 188
+ GA AL V ++ G + G +V+ + + D+D
Sbjct: 130 MNGASAALM-------------ISDIPFPTPVGSVRIGKVDGNFVVNPNEEDLLENTDLD 176
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
T+ I+ V+ A + L++A D I L +LQ + ++ +
Sbjct: 177 LIVAGTEE-AILMVEAGANE--IPEAEILDALDIAHDAIKKLCRLQWE-LARK 225
>gi|241668881|ref|ZP_04756459.1| polynucleotide phosphorylase/polyadenylase [Francisella
philomiragia subsp. philomiragia ATCC 25015]
gi|254877413|ref|ZP_05250123.1| polyribonucleotide nucleotidyltransferase [Francisella philomiragia
subsp. philomiragia ATCC 25015]
gi|254843434|gb|EET21848.1| polyribonucleotide nucleotidyltransferase [Francisella philomiragia
subsp. philomiragia ATCC 25015]
Length = 693
Score = 156 bits (395), Expect = 2e-36, Method: Composition-based stats.
Identities = 42/244 (17%), Positives = 85/244 (34%), Gaps = 17/244 (6%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +R I++ V GS L G+T L TL + ++ + +
Sbjct: 317 RIDGRCTETIRPINVKIGVLPGVHGSALFTRGETQALVVTTLGSDRDAQLVESLDGIEKS 376
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G R R + RA ++V + I +
Sbjct: 377 RYMLHYNFPPYSVGECGMVGMAPKR---REIGHANLAKRATQAVFPNEEAYPYVVRIVSE 433
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+++++G + A + G+ +++ D + + + + G A+ +
Sbjct: 434 ILESNGSSSMATVCGSSLSMMDAGVPIAEPVAGIAMGLIKDGAKYAVLSD---------I 484
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T G + +Q + S++ L A+ ++ + +V
Sbjct: 485 LGDEDHLGDMDFKVAGTRYG-VTALQMDIKIKGISREILEQALEQARTGRLHILGIMNEV 543
Query: 238 ISNE 241
I
Sbjct: 544 IREH 547
Score = 79.5 bits (194), Expect = 4e-13, Method: Composition-based stats.
Identities = 36/225 (16%), Positives = 68/225 (30%), Gaps = 27/225 (12%)
Query: 13 EISLTRR-VSKYAEGSCLVKFG----DTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLP 67
EI L +++ A+GS V G + ++ + + + T G +P
Sbjct: 14 EIVLETGGMARQADGSVTVSCGNNVVLVTTVVKKSVAAGADFFPLSVHYLEKTYAAGKIP 73
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R GR I R+I R++R QI+
Sbjct: 74 GGFLRR------EGRPSEEQILISRLIDRSIRPSFPDGFFNEIQIVATVLSYDGSFSPDM 127
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
A+ G ++ +A + G G I++ + E D+
Sbjct: 128 LALIG-------------ASASLAISGAPYDDIIAGVRVGYTNGKYILNPNKEELKESDL 174
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
D T I+ V+ +E + + + A + +I
Sbjct: 175 DLVVSGT-DDAILMVE--SEANSLPESVMLGGILYAHKHLKTIIN 216
>gi|297172161|gb|ADI23142.1| hypothetical protein [uncultured gamma proteobacterium
HF0770_09E07]
Length = 442
Score = 156 bits (395), Expect = 2e-36, Method: Composition-based stats.
Identities = 41/245 (16%), Positives = 87/245 (35%), Gaps = 18/245 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR ++R+I++ GS L G+T + T TL + + ++
Sbjct: 66 RIDGRGMTEVRDITIETNFLPSVHGSALFTRGETQAIVTTTLGSGRDVQTVDALQGEIKD 125
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y S G R+ G R+L+ V I + +
Sbjct: 126 NFMLHYNFPSYSVGELGFPMGPKRREIGHGAL----AKRSLKFGVPSLEDFPYAIRVVSE 181
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ G +AL +++ + + +G + +
Sbjct: 182 ITESNGSSSMASVCGGSLALMAAGVPIKENVAGVAMGLIKEGDKYEVLTD---------I 232
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T +G + +Q + +++ L AKD +++ V
Sbjct: 233 LGDEDHLGDMDFKVAGTKNG-VTGLQMDIKIEGINEEILEKALMQAKDARMHILEKMDAV 291
Query: 238 ISNEV 242
+S +
Sbjct: 292 LSKPL 296
>gi|291286002|ref|YP_003502818.1| ribonuclease PH [Denitrovibrio acetiphilus DSM 12809]
gi|290883162|gb|ADD66862.1| ribonuclease PH [Denitrovibrio acetiphilus DSM 12809]
Length = 236
Score = 156 bits (395), Expect = 2e-36, Method: Composition-based stats.
Identities = 109/234 (46%), Positives = 152/234 (64%), Gaps = 2/234 (0%)
Query: 6 RQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGM 65
R+ + +R++ + + + EGS LV FGDT ++ A++ E VP ++R++ GW+TAEY M
Sbjct: 5 RKNDSLRKVEIIKDYISHPEGSVLVAFGDTKVICNASVSEGVPPFLRDSGTGWVTAEYAM 64
Query: 66 LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125
LPR+T R +RE+ G+Q GRSQEI R+IGR+LR+ VD LG + IDCDVIQADGGT
Sbjct: 65 LPRATHTRNQRESKRGKQDGRSQEISRLIGRSLRAAVDFEKLGENTVTIDCDVIQADGGT 124
Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185
RTAAITG + AL+ + M + G V+AIS G++ G P++DL+Y EDS
Sbjct: 125 RTAAITGGFCALYMACEWMIK--QGMIAENPVTGMVSAISVGIVMGEPMLDLEYAEDSIA 182
Query: 186 DVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
DVD N V+ D+ IVE+QGSAE+ F +D ML+L I +L +QK VI
Sbjct: 183 DVDMNLVVKDNAEIVEIQGSAEKVAFDRDLLNKMLDLGFKGIKELTDIQKQVIK 236
>gi|113867066|ref|YP_725555.1| polynucleotide phosphorylase/polyadenylase [Ralstonia eutropha H16]
gi|122947022|sp|Q0KCT4|PNP_RALEH RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|113525842|emb|CAJ92187.1| polyribonucleotide nucleotidyltransferase [Ralstonia eutropha H16]
Length = 723
Score = 156 bits (395), Expect = 2e-36, Method: Composition-based stats.
Identities = 49/242 (20%), Positives = 96/242 (39%), Gaps = 18/242 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +R I + V A GS L G+T L ATL +E++ +
Sbjct: 317 RIDGRDTRTVRPIEIRSSVLPRAHGSALFTRGETQALVVATLGTKSDEQIIDALAGEYRD 376
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y M P +TG + + R+ G + RAL V+ + I + +
Sbjct: 377 RFMLHYNMPPFATGETGRVGSPKRREIGHGRL----AKRALIPVLPKDDEFAYTIRLVSE 432
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ G +AL D ++ + +L+G+ A+ +
Sbjct: 433 ITESNGSSSMASVCGGCLALMDAGVPVKAHVAGVAMGLILEGNKFAVLTD---------I 483
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D TD+G I +Q + +++ L A++ ++ ++
Sbjct: 484 LGDEDHLGDMDFKVAGTDNG-ITALQMDIKVQGITKEIMQVALAQAREGRLHILHKMQEA 542
Query: 238 IS 239
+
Sbjct: 543 MG 544
Score = 91.8 bits (226), Expect = 7e-17, Method: Composition-based stats.
Identities = 39/232 (16%), Positives = 75/232 (32%), Gaps = 27/232 (11%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT----KHGWITAEYGMLPR 68
+ + +++ A G+ LV DT +L T + + T G +P
Sbjct: 18 VRMETGEIARQAGGAVLVDVEDTVVLATVVAAKNPKPGQDFFPLTVDYIEKTYAAGKIPG 77
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
R GR R+I R LR + Q++I + +
Sbjct: 78 GFFKR------EGRPSENETLTSRLIDRPLRPLFPEGFYNDVQVVIHVVSLNPEVPADIP 131
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+ GA A G V A G G +++ + +T D+D
Sbjct: 132 ALIGASAA-------------LAVSGIPFNGPVGAARVGYKDGQYLLNPTRSQLATSDLD 178
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
T+ ++ V+ A + S+D + +++ I +++
Sbjct: 179 LVVAGTER-AVLMVESEANQ--LSEDVMLGAVVYGHEQMQIAINAIHELVRE 227
>gi|312793244|ref|YP_004026167.1| polyribonucleotide nucleotidyltransferase [Caldicellulosiruptor
kristjanssonii 177R1B]
gi|312180384|gb|ADQ40554.1| polyribonucleotide nucleotidyltransferase [Caldicellulosiruptor
kristjanssonii 177R1B]
Length = 701
Score = 156 bits (394), Expect = 2e-36, Method: Composition-based stats.
Identities = 50/241 (20%), Positives = 89/241 (36%), Gaps = 17/241 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHG 57
R GR+ +++R + + GS L K G T +LT AT E + + +
Sbjct: 313 RPDGRKFDEIRPLYAEVGILPRTHGSALFKRGYTQVLTVATLGTKGEMQFLDGLEEEEAK 372
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P STG R+ G RAL V+ I + +
Sbjct: 373 RYMHHYNFPPFSTGESKPVRGPGRREIGHGAL----AERALEPVIPSEDEFPYTIRLVSE 428
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
V+ ++G T A++ G+ +AL D ++ + + K + I + D+
Sbjct: 429 VLTSNGSTSQASVCGSTLALMDAGVPIKAPVAGISIGLITKDDGSFI--------LLTDI 480
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T G I +Q + +++ L A++ ++ + V
Sbjct: 481 QGIEDFFGDMDFKVAGTREG-ITAIQLDIKIHGLTKEIIEKALYQAREARLKILDFMQTV 539
Query: 238 I 238
I
Sbjct: 540 I 540
Score = 105 bits (261), Expect = 6e-21, Method: Composition-based stats.
Identities = 37/234 (15%), Positives = 79/234 (33%), Gaps = 27/234 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVP----MWIRNTKHGWITAEYGML 66
RE+S + A G+ L ++GDT +L TA EK + + G +
Sbjct: 13 RELSFEIGKYALLANGAVLARYGDTAVLVTACASEKPREGINFFPLTVDYEERLYSVGKI 72
Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
P R G+ ++ R+I R +R + +I + D
Sbjct: 73 PGGFIKR------EGKPSEKAILSARLIDRPIRPLFPKDFYHDVSVIATVLSVDPDNPPD 126
Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
A+ G+ VA +G ++ G + G +++ E
Sbjct: 127 VLAMLGSSVA-------------LSISDIPFEGPTGSVLVGYVDGKIVINPTAKEREVSK 173
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
+ T ++ ++ A+ +D + A++ I +++ + ++
Sbjct: 174 LHLVVSGTKD-RVMMIEAGAKEVP--EDIMLEAIMTAQEEIKKIVEFIEGIVRE 224
>gi|188583695|ref|YP_001927140.1| polynucleotide phosphorylase/polyadenylase [Methylobacterium populi
BJ001]
gi|226702662|sp|B1ZGS7|PNP_METPB RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|179347193|gb|ACB82605.1| Polyribonucleotide nucleotidyltransferase [Methylobacterium populi
BJ001]
Length = 745
Score = 156 bits (394), Expect = 2e-36, Method: Composition-based stats.
Identities = 52/241 (21%), Positives = 91/241 (37%), Gaps = 18/241 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +R I V A GS L G+T L ATL +E+ + T
Sbjct: 316 RIDGRDVKTVRPIVSEVGVLPRAHGSSLFTRGETQALVVATLGTGEDEQFIDALEGTYKE 375
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + + R+ G + RA+R V+ + I + +
Sbjct: 376 RFLLHYNFPPYSVGETGRMGSPGRREIGHGKL----AWRAIRPVLPPAHEFPYTIRVVSE 431
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ G ++L D + + +L+G A+ +
Sbjct: 432 ITESNGSSSMASVCGGSLSLMDAGVPLRRPVAGIAMGLILEGERFAVLSD---------I 482
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D TD G I +Q + A +++ L AKD A ++
Sbjct: 483 LGDEDHLGDMDFKVAGTDEG-ITSLQMDIKIAGITEEIMRVALAQAKDGRAHILGEMAQA 541
Query: 238 I 238
+
Sbjct: 542 L 542
Score = 102 bits (254), Expect = 4e-20, Method: Composition-based stats.
Identities = 34/228 (14%), Positives = 72/228 (31%), Gaps = 27/228 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----HGWITAEYGML 66
R++ L ++ A+G+ + +G+T +L T ++ I + G +
Sbjct: 14 RKLVLETGKTARQADGAVVATYGETTVLATVVAAKEPKAGIDFMPLTVNYQERAYAAGRI 73
Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
P R GR + + R+I R +R + Q+++ +
Sbjct: 74 PGGYFKR------EGRPSEKETLVSRLIDRPIRPLFVEGWRNDTQVVVTVLSHDLENDPD 127
Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
++ A A G + A G L G ++ E +
Sbjct: 128 IVSMVAASAA-------------LTLSGVPFMGPIGAARVGYLNGGYKLNPLVTEVAEST 174
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
+D T ++ V+ A+ S+D + +I+
Sbjct: 175 LDLVVAGTQD-AVLMVESEAKE--LSEDVMLGAVMFGHKHFQPVIEAI 219
>gi|326403855|ref|YP_004283937.1| ribonuclease PH [Acidiphilium multivorum AIU301]
gi|325050717|dbj|BAJ81055.1| ribonuclease PH [Acidiphilium multivorum AIU301]
Length = 243
Score = 156 bits (394), Expect = 2e-36, Method: Composition-based stats.
Identities = 115/237 (48%), Positives = 161/237 (67%), Gaps = 2/237 (0%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R SGR + +R++ + S++AEGS L++ G T +L A++E +VP ++R GW+TA
Sbjct: 6 RPSGRMADALRQVEIVTGFSRHAEGSALIRMGGTEVLCAASVEGRVPGFLRGAGQGWVTA 65
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
EYGMLPR+T R REA G+Q GR+QEIQR+IGR+LR+VVD +ALG I +DCDV+ A
Sbjct: 66 EYGMLPRATHTRGDREAARGKQSGRTQEIQRLIGRSLRAVVDRTALGEMTITLDCDVLNA 125
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
DGGTR AAITGAWVAL ++ + + + + VAA+SCG+ G P++DLDY E
Sbjct: 126 DGGTRCAAITGAWVALALAIRTLRKANVIATDPLIGQ--VAAVSCGVFGGVPVLDLDYAE 183
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
DS + DANFV+T +G IVE+Q +AERATF + F +L LA+ A+L Q+ +
Sbjct: 184 DSNAEADANFVLTGTGGIVEIQATAERATFEEATFGTLLGLARKGTAELFTAQRAAL 240
>gi|225848390|ref|YP_002728553.1| polynucleotide phosphorylase/polyadenylase [Sulfurihydrogenibium
azorense Az-Fu1]
gi|257096710|sp|C1DTW6|PNP_SULAA RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|225644547|gb|ACN99597.1| polyribonucleotide nucleotidyltransferase [Sulfurihydrogenibium
azorense Az-Fu1]
Length = 707
Score = 156 bits (394), Expect = 2e-36, Method: Composition-based stats.
Identities = 49/245 (20%), Positives = 81/245 (33%), Gaps = 19/245 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIR-----NTK 55
+R+ GR+ ++R I + V GS + G T T TL I
Sbjct: 313 IRIDGRKPEEIRPIWIKVGVFPRNHGSAIFTRGQTQAFVTVTLGSLSEGQIEESIEAGEV 372
Query: 56 HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115
Y P STG A S R+ G RAL ++ I +
Sbjct: 373 MKRFMLHYNFPPFSTGEAKPPRATSRREIGHGNL----AERALEPLIPPEEEFPYAIRVV 428
Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIV 175
D+++++G T A + G +AL D M+ + + I
Sbjct: 429 SDILESNGSTSMATVCGGSLALFDAGVPMKKHVAGIAMGLIKAEDKFVILSD-------- 480
Query: 176 DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
+ ED D+D T G + +Q + +++ L A+D ++ L
Sbjct: 481 -ILGDEDHLGDMDFKVAGTRDG-VTSIQMDIKVKGLTKEILEKALQQARDGRNYILDLMY 538
Query: 236 DVISN 240
I
Sbjct: 539 QAIPE 543
Score = 112 bits (279), Expect = 5e-23, Method: Composition-based stats.
Identities = 45/229 (19%), Positives = 78/229 (34%), Gaps = 27/229 (11%)
Query: 13 EISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRN----TKHGWITAEYGMLP 67
+ +K A G+ +V+ GDT +L A + E+ I ++ YG +P
Sbjct: 16 PFIIETGYFAKQANGAVIVRQGDTAVLVAAVMSEEPQADIDFLPLTVEYREKYYAYGKIP 75
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R G+ R + R I R +R + I
Sbjct: 76 GGFVKR------EGKPTDREILVARNIDRPIRPLFPKGFYNDIVITAYTLSADDKYDPDV 129
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
I GA ALH +G +A + + G IV+ Y + + D+
Sbjct: 130 LGIVGASAALH-------------ISDIPFEGPIAGVRVCRVNGEFIVNPTYQQKAQADI 176
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ + IV V+G A+ ++ + I LI+LQ++
Sbjct: 177 EIVVAGSKD-AIVMVEGGAKEVP--EEDILEAMMFGHQEIKKLIELQEE 222
>gi|239947698|ref|ZP_04699451.1| polyribonucleotide nucleotidyltransferase [Rickettsia endosymbiont
of Ixodes scapularis]
gi|239921974|gb|EER21998.1| polyribonucleotide nucleotidyltransferase [Rickettsia endosymbiont
of Ixodes scapularis]
Length = 748
Score = 156 bits (394), Expect = 2e-36, Method: Composition-based stats.
Identities = 44/243 (18%), Positives = 86/243 (35%), Gaps = 18/243 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHG 57
R+ GR +R+I+ + A GS L G+T L + T L+E++ +
Sbjct: 316 RIDGRSTTDIRQIACEIGLLPSAHGSALFTRGETQSLVSTTFGTSLDEQIVDSLEGEYKE 375
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S + +A S R+ G + RA+ ++ I + +
Sbjct: 376 RFMLNYIFPPYSVNEVMPMKAPSRREVGHGKL----AWRAINPILPNKVQFPYSIRVVAE 431
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+++G + A + + +AL ++ + + +G A+ +
Sbjct: 432 TTESNGSSSMATVCSSSLALMYAGVPIKAPVAGIAMGLIKEGKKFAVLSD---------I 482
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T G I +Q + + L A+ +++ V
Sbjct: 483 LGDEDYFGDMDFKVAGTSEG-ITALQMDIKISGVDFKIMKVALEQARLGRLHILEQMNKV 541
Query: 238 ISN 240
IS
Sbjct: 542 ISK 544
Score = 96.1 bits (237), Expect = 4e-18, Method: Composition-based stats.
Identities = 40/233 (17%), Positives = 83/233 (35%), Gaps = 28/233 (12%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVP----MWIRNTKHGWITAEYGMLPR 68
+ L+ +++ A+G+ VK G++ LL TA + +K + + + G +P
Sbjct: 16 LELSTGKIARQADGAVTVKMGNSVLLCTAVVAKKAKEGIGFFPLTINYREMAYAAGKIPG 75
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
R G+ R + R+I R +R + + + + +
Sbjct: 76 GFFKR------EGKASDREVLVSRLIDRPIRPLFHPAFVNETHVTCSVLSYDPETPVDIL 129
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
AI GA A VAA G++ G +++ T +D
Sbjct: 130 AIIGASAA-------------LSLSPAPYLEIVAASKVGLINGEFVLNPALELLKTSQLD 176
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
T ++ V+ +E S++ + + +IK+ K+ ++ E
Sbjct: 177 LVVAGTSD-SVMMVE--SEAHLLSEEQMLEAVKFGFESFQPVIKIIKE-LAEE 225
>gi|241116894|ref|XP_002401660.1| polyribonucleotide nucleotidyltransferase, putative [Ixodes
scapularis]
gi|215493204|gb|EEC02845.1| polyribonucleotide nucleotidyltransferase, putative [Ixodes
scapularis]
Length = 670
Score = 156 bits (394), Expect = 2e-36, Method: Composition-based stats.
Identities = 44/243 (18%), Positives = 86/243 (35%), Gaps = 18/243 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHG 57
R+ GR +R+I+ + A GS L G+T L + T L+E++ +
Sbjct: 305 RIDGRSTTDIRQIACEIGLLPSAHGSALFTRGETQSLVSTTFGTSLDEQIVDSLEGEYKE 364
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S + +A S R+ G + RA+ ++ I + +
Sbjct: 365 RFMLNYIFPPYSVNEVMPMKAPSRREVGHGKL----AWRAINPILPNKVQFPYSIRVVAE 420
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+++G + A + + +AL ++ + + +G A+ +
Sbjct: 421 TTESNGSSSMATVCSSSLALMYAGVPIKAPVAGIAMGLIKEGKKFAVLSD---------I 471
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T G I +Q + + L A+ +++ V
Sbjct: 472 LGDEDYFGDMDFKVAGTSEG-ITALQMDIKISGVDFKIMKVALEQARLGRLHILEQMNKV 530
Query: 238 ISN 240
IS
Sbjct: 531 ISK 533
Score = 96.1 bits (237), Expect = 4e-18, Method: Composition-based stats.
Identities = 40/233 (17%), Positives = 83/233 (35%), Gaps = 28/233 (12%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVP----MWIRNTKHGWITAEYGMLPR 68
+ L+ +++ A+G+ VK G++ LL TA + +K + + + G +P
Sbjct: 5 LELSTGKIARQADGAVTVKMGNSVLLCTAVVAKKAKEGIGFFPLTINYREMAYAAGKIPG 64
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
R G+ R + R+I R +R + + + + +
Sbjct: 65 GFFKR------EGKASDREVLVSRLIDRPIRPLFHPAFVNETHVTCSVLSYDPETPVDIL 118
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
AI GA A VAA G++ G +++ T +D
Sbjct: 119 AIIGASAA-------------LSLSPAPYLEIVAASKVGLINGEFVLNPALELLKTSQLD 165
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
T ++ V+ +E S++ + + +IK+ K+ ++ E
Sbjct: 166 LVVAGTSD-SVMMVE--SEAHLLSEEQMLEAVKFGFESFQPVIKIIKE-LAEE 214
>gi|84500513|ref|ZP_00998762.1| polyribonucleotide nucleotidyltransferase [Oceanicola batsensis
HTCC2597]
gi|84391466|gb|EAQ03798.1| polyribonucleotide nucleotidyltransferase [Oceanicola batsensis
HTCC2597]
Length = 712
Score = 156 bits (394), Expect = 2e-36, Method: Composition-based stats.
Identities = 46/240 (19%), Positives = 91/240 (37%), Gaps = 17/240 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +Q+R+I + + GS L G+T L TL +E++ +
Sbjct: 318 RIDGRALDQVRQIEVETGLLPRTHGSALFTRGETQGLVVTTLGTGDDEQIIDALHGNFRS 377
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + R+ G + RAL++V+ + I + +
Sbjct: 378 NFLLHYNFPPYSVGEAGRVGPPGRREIGHGKL----AWRALQAVLPAATDFPYTIRVVSE 433
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ G +++ D ++ + VL+ + D+
Sbjct: 434 ITESNGSSSMASVCGGSLSMMDAGVPLKAAVAGVAMGLVLEDD--------GEFAILTDI 485
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T++G I +Q + A + + L AKD ++
Sbjct: 486 LGDEDHLGDMDFKVAGTENG-ITSLQMDIKVAGITPEIMKKALAQAKDGRMHILGEMNKA 544
Score = 106 bits (263), Expect = 4e-21, Method: Composition-based stats.
Identities = 31/228 (13%), Positives = 65/228 (28%), Gaps = 25/228 (10%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGN 72
++L V++ A+GS + G+T ++ T ++ E
Sbjct: 16 LTLETGKVARQADGSVIATLGETSVMANVTFAKEPKPGQDFFPLTVHYQEKYYAAGKVP- 74
Query: 73 RVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITG 132
R + R+I R +R + ++ A+
Sbjct: 75 -GGFFKREARPTEKETLTARLIDRPIRPLFVPGFKNEVLVMCTVLSHDLVNDPDIVAMIA 133
Query: 133 AWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGED------STID 186
A A G +A G + G +++ D +
Sbjct: 134 ASAA-------------LTISGAPFMGPIAGCRVGYVDGDYVLNPDVEDMNGLRNNPEQR 180
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
+D T ++ V+ A ++D + A ++I +I L
Sbjct: 181 LDLVVAGTKD-AVMMVESEAYE--LTEDEMLGAVTFAHEQIQPVIDLI 225
>gi|34580431|ref|ZP_00141911.1| polyribonucleotide nucleotidyltransferase [Rickettsia sibirica 246]
gi|28261816|gb|EAA25320.1| polyribonucleotide nucleotidyltransferase [Rickettsia sibirica 246]
Length = 748
Score = 156 bits (394), Expect = 2e-36, Method: Composition-based stats.
Identities = 46/243 (18%), Positives = 88/243 (36%), Gaps = 18/243 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHG 57
R+ GR +R+I+ + A GS L G+T L + T L+E++ +
Sbjct: 316 RIDGRSTTDIRQIACEIGLLPSAHGSALFTRGETQSLVSTTFGTSLDEQIVDSLEGEYKE 375
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S + +A S R+ G + RA+ ++ A I + +
Sbjct: 376 RFMLNYIFPPYSVNEAMPMKAPSRREVGHGKL----AWRAINPILPNKAQFPYSIRVVAE 431
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+++G + A + G+ +AL ++ + V +G A+ +
Sbjct: 432 TTESNGSSSMATVCGSSLALMYAGVPIKAPVAGIAMGLVKEGKNFAVLSD---------I 482
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T G + +Q + + L A+ +++ V
Sbjct: 483 LGDEDYFGDMDFKVAGTSEG-MTALQMDIKISGVDFKIMKVALEQARLGRLHILEQMNKV 541
Query: 238 ISN 240
IS
Sbjct: 542 ISK 544
Score = 90.3 bits (222), Expect = 2e-16, Method: Composition-based stats.
Identities = 39/229 (17%), Positives = 78/229 (34%), Gaps = 20/229 (8%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGN 72
+ L+ +++ A+G+ VK G++ LL TA + K I M +
Sbjct: 16 LELSTGKIARQADGAVTVKMGNSVLLCTAVVANKAKEGIGFLPLTINYR--EMAYAAGKI 73
Query: 73 RVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITG 132
G+ R + R+I R +R + + + + + AI G
Sbjct: 74 PGGFFKHEGKASDREVVVSRLIDRPIRPLFHPAFVNETHVTCSVLSYDPETPVDILAIIG 133
Query: 133 AWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFV 192
A A VAA G++ G +++ T +D
Sbjct: 134 ASAA-------------LSLSPAPYLEIVAASKVGLINGEFVLNPTLALLKTSQLDLVVA 180
Query: 193 MTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
T ++ V+ +E S++ + + +IK+ K+ ++ E
Sbjct: 181 GTSD-SVMMVE--SEAHLLSEEQMLEAVKFGFESFQPVIKIIKE-LAEE 225
>gi|260655007|ref|ZP_05860495.1| polyribonucleotide nucleotidyltransferase [Jonquetella anthropi
E3_33 E1]
gi|260630322|gb|EEX48516.1| polyribonucleotide nucleotidyltransferase [Jonquetella anthropi
E3_33 E1]
Length = 756
Score = 156 bits (394), Expect = 2e-36, Method: Composition-based stats.
Identities = 47/248 (18%), Positives = 88/248 (35%), Gaps = 20/248 (8%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL------EEKVPMWIRNT 54
+R GR +Q+R IS + GS L G+T L TATL ++ + N
Sbjct: 311 VRADGRATDQIRPISCEIGLLPRVHGSALFTRGETMSLATATLGMLGEDDQMMDGLKHNE 370
Query: 55 KHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIII 114
+ Y P S G R+ G RAL ++ + +
Sbjct: 371 PNKRFLLHYNFPPFSVGEVRPMRGPGRREIGHGAL----AERALAPIIPSEEDFPYVVRV 426
Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPI 174
D+++++G + A+I G +AL ++ + + +G I
Sbjct: 427 VSDILESNGSSSQASICGGSLALMAAGVPVKCHVAGIAMGLIKEGDDVVILTD------- 479
Query: 175 VDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
+ ED D+D T G + +Q + +++ L A+ +++
Sbjct: 480 --IQGLEDHYGDMDFKVAGTREG-VTALQMDNKAGGITKEILTQALGQARKARMEILDKM 536
Query: 235 KDVISNEV 242
+ I+ V
Sbjct: 537 EACIAAPV 544
Score = 94.1 bits (232), Expect = 2e-17, Method: Composition-based stats.
Identities = 45/235 (19%), Positives = 79/235 (33%), Gaps = 28/235 (11%)
Query: 13 EISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT----KHGWITAEYGMLP 67
E+ T V+K A G+ + GDT +LTTA + +K + + G +P
Sbjct: 13 ELQFTTGKVAKQANGAIWARVGDTVVLTTACMTDKPRVGLDFFPLLVDFEERYYSAGKIP 72
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R GR + R+I R++RS+ + ++ +
Sbjct: 73 GGFIKR------EGRPSQTAILSARVIDRSIRSLFEDWMRHDVHVVTTVLSVDQKNTPNI 126
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
AI A AL G V A+ G + G +V+ + +
Sbjct: 127 LAINAASAALC-------------ISDIPWNGPVGAVRMGYVNGQLVVNPTEDQMPESSL 173
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNEV 242
D G I V+ A + L +A++ I + + Q + E+
Sbjct: 174 DLTVAGHADG-ITMVEAGAHEVP--EALLIDALGVAQEEIRKICQFQLK-MREEI 224
>gi|150021487|ref|YP_001306841.1| polynucleotide phosphorylase/polyadenylase [Thermosipho
melanesiensis BI429]
gi|187611329|sp|A6LNF5|PNP_THEM4 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|149794008|gb|ABR31456.1| Polyribonucleotide nucleotidyltransferase [Thermosipho
melanesiensis BI429]
Length = 699
Score = 156 bits (394), Expect = 2e-36, Method: Composition-based stats.
Identities = 44/244 (18%), Positives = 82/244 (33%), Gaps = 18/244 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
+R GR ++R I+ V GS L G+T L TL EE++ I
Sbjct: 321 IRADGRTPEEIRPITCEVGVLPRTHGSALFTRGETQSLGIVTLGAPMEEQIVDTIMEEGT 380
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P S G R+ G RAL++V + +
Sbjct: 381 KRFILHYNFPPFSVGEVKPLRGPGRREIGHGHL----AERALKAVAPDEEDFPYVVRVVS 436
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
++++++G + A + +AL D ++ + ++ +
Sbjct: 437 EILESNGSSSMATVCSGSLALMDAGVPIKTHVAGVAMGLIVDEENEVVLTD--------- 487
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T +G I Q + A ++ L A+ ++ + +
Sbjct: 488 IQGLEDHWGDMDFKVAGTRNG-ITAFQMDCKIAGVGEELLKKALKQARVARMRILDIMFE 546
Query: 237 VISN 240
I
Sbjct: 547 TIKE 550
Score = 105 bits (262), Expect = 5e-21, Method: Composition-based stats.
Identities = 42/234 (17%), Positives = 89/234 (38%), Gaps = 27/234 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----HGWITAEYGML 66
R++++ V+K + G+ V+FGD+ +L TA + ++V + + G +
Sbjct: 14 RKLTIQYGKVAKQSSGAAWVQFGDSVVLATANISDRVIEGVDFVPLTVEYQEKFYAAGKI 73
Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
P R G+ + R+I R +R + Q+I+ + D
Sbjct: 74 PGGFIKR------EGKPTESAILSARLIDRPIRPLFPKYLRNDVQLIVTVLSVDGDTPPD 127
Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
I A +AL+ +G VA + G + G ++ +
Sbjct: 128 VTGIFAASLALNF-------------SKIPFQGIVAGVRIGYVDGEFVIFPTEEQLKNSK 174
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
+D + I V+G A+ +++ L +A + I LI+ +++++
Sbjct: 175 LDIVVAGSKD-AITMVEGEAKE--VTEEEMVQALMVAHEAIKKLIEFEEEILRE 225
>gi|325266482|ref|ZP_08133159.1| polyribonucleotide nucleotidyltransferase [Kingella denitrificans
ATCC 33394]
gi|324981925|gb|EGC17560.1| polyribonucleotide nucleotidyltransferase [Kingella denitrificans
ATCC 33394]
Length = 705
Score = 156 bits (394), Expect = 2e-36, Method: Composition-based stats.
Identities = 45/242 (18%), Positives = 92/242 (38%), Gaps = 18/242 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +R I++ V GS L G+T L ATL +E++ +
Sbjct: 316 RIDGRDTRTVRPINIQTNVLPRTHGSALFTRGETQALAVATLGTSRDEQIIDALSGEYTD 375
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P STG + A R+ G + RAL +V+ + + + +
Sbjct: 376 RFMLHYNFPPYSTGEVGRVGAPKRREIGHGRL----AKRALVAVLPKPEDFNYTMRVVSE 431
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ G ++L ++ + +L+ + A+ +
Sbjct: 432 ITESNGSSSMASVCGGCLSLLSAGVPLKAHVAGIAMGLILEDNKFAVLTD---------I 482
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T G + +Q + +++ L AK+ ++ +
Sbjct: 483 LGDEDHLGDMDFKVAGTTDG-VTALQMDIKIQGITKEIMQIALAQAKEARLHILGQMQAA 541
Query: 238 IS 239
+S
Sbjct: 542 VS 543
Score = 94.9 bits (234), Expect = 9e-18, Method: Composition-based stats.
Identities = 36/234 (15%), Positives = 77/234 (32%), Gaps = 28/234 (11%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT----KHGWITAEYGMLPR 68
++L +++ A + V GDT +L T + V + T G +P
Sbjct: 16 VTLETGEIARQAAAAVKVSMGDTVVLVAVTANKDVKEGQDFFPLTVDYLERTYAAGKIPG 75
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
R G+Q + R+I R +R + QI+ + +
Sbjct: 76 GFFKR------EGKQSEKEILTSRLIDRPIRPLFPEGFYHDIQIVAMVVSCDPEIDSDIP 129
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+ GA A G + A G + +++ + +D
Sbjct: 130 AMIGASAA-------------LVLSGVPFAGPIGAARVGYVNDTYVLNPTKQQLHRSKLD 176
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNEV 242
T ++ V+ A+ +D + +++ +I+ + +++EV
Sbjct: 177 LVVAGTAQ-AVLMVESEADI--LPEDVMLGAVVYGHEQMQAVIQAINE-LADEV 226
>gi|312622695|ref|YP_004024308.1| polyribonucleotide nucleotidyltransferase [Caldicellulosiruptor
kronotskyensis 2002]
gi|312203162|gb|ADQ46489.1| polyribonucleotide nucleotidyltransferase [Caldicellulosiruptor
kronotskyensis 2002]
Length = 701
Score = 156 bits (394), Expect = 2e-36, Method: Composition-based stats.
Identities = 50/241 (20%), Positives = 89/241 (36%), Gaps = 17/241 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHG 57
R GR+ +++R + + GS L K G T +LT AT E + + +
Sbjct: 313 RPDGRKFDEIRPLYAEVGILPRTHGSALFKRGYTQVLTVATLGTKGEMQFLDGLEEEEAK 372
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P STG R+ G RAL V+ I + +
Sbjct: 373 RYMHHYNFPPFSTGESKPVRGPGRREIGHGAL----AERALEPVIPSEDEFPYTIRLVSE 428
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
V+ ++G T A++ G+ +AL D ++ + + K + I + D+
Sbjct: 429 VLTSNGSTSQASVCGSTLALMDAGVPIKAPVAGISIGLITKDDGSFI--------LLTDI 480
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T G I +Q + +++ L A++ ++ + V
Sbjct: 481 QGIEDFFGDMDFKVAGTREG-ITAIQLDIKIHGLTKEIIEKALYQAREARLKILDFMQTV 539
Query: 238 I 238
I
Sbjct: 540 I 540
Score = 106 bits (263), Expect = 4e-21, Method: Composition-based stats.
Identities = 37/234 (15%), Positives = 79/234 (33%), Gaps = 27/234 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVP----MWIRNTKHGWITAEYGML 66
RE+S + A G+ L ++GDT +L TA EK + + G +
Sbjct: 13 RELSFEIGKYALLANGAVLARYGDTAVLVTACASEKPREGINFFPLTVDYEERLYSVGKI 72
Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
P R G+ ++ R+I R +R + +I + D
Sbjct: 73 PGGFIKR------EGKPSEKAILSARLIDRPIRPLFPKDFYHDVSVIATVLSVDPDNPPD 126
Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
A+ G+ VA +G ++ G + +++ E
Sbjct: 127 VLAMLGSSVA-------------LSISDIPFEGPTGSVLVGYVDDKIVINPTAKEREVSK 173
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
+ T ++ ++ A+ S+D + A++ I +++ + ++
Sbjct: 174 LHLVVSGTKD-RVMMIEAGAKE--VSEDIMLEAIMRAQEEIKKIVEFIEGIVRE 224
>gi|237738958|ref|ZP_04569439.1| polyribonucleotide nucleotidyltransferase [Fusobacterium sp.
2_1_31]
gi|229423558|gb|EEO38605.1| polyribonucleotide nucleotidyltransferase [Fusobacterium sp.
2_1_31]
Length = 699
Score = 156 bits (394), Expect = 2e-36, Method: Composition-based stats.
Identities = 47/243 (19%), Positives = 91/243 (37%), Gaps = 18/243 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR ++R + V GS L G+T L TL +E++ + +
Sbjct: 324 RVDGRTTTEIRPLDAQINVLPIPHGSALFTRGETQSLAITTLGTKADEQLIDDLEKEYYK 383
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + + R+ G RALR V+ I + +
Sbjct: 384 KFYLHYNFPPYSVGEVGRMGSPGRRELGHGSL----AERALRYVIPSEEEFPYTIRVVSE 439
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A+I G ++L +++ + + +G + ++
Sbjct: 440 ITESNGSSSQASICGGSLSLMSAGVPIKEHVAGIAMGLIKEGEEFTVLTDIM-------- 491
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T SG I +Q + +++ LN A + +++L +
Sbjct: 492 -GLEDHLGDMDFKVAGTKSG-ITALQMDIKITGITEEIMRIALNQAHEARQQILELMNNT 549
Query: 238 ISN 240
IS
Sbjct: 550 ISK 552
Score = 99.5 bits (246), Expect = 3e-19, Method: Composition-based stats.
Identities = 39/229 (17%), Positives = 78/229 (34%), Gaps = 27/229 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGML 66
R + ++ +S+ + G+ ++++GDT +L+TA + + + G
Sbjct: 14 RTLKVSTGKISRQSSGAIVIQYGDTVILSTANRSKEARKGADFFPLTVDYVEKFYSTGKF 73
Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
P R GR + I R+I R +R + I+
Sbjct: 74 PGGFNKR------EGRPSTNATLIARLIDRPIRPMFPEGFNYDVHIVNTVLSYDEVNTPD 127
Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
I G+ +AL G VA ++ G G I++ E +
Sbjct: 128 YLGIIGSSLALM-------------ISDIPFLGPVAGVTVGYKNGEFILNPSPAELEESE 174
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
+D + T + V+ A+ ++ + A D I + + Q+
Sbjct: 175 LDLSVAGTKD-AVNMVEAGAKE--LDEETMLKAIMFAHDNIKKICEFQE 220
>gi|294675841|ref|YP_003576456.1| polyribonucleotide nucleotidyltransferase [Rhodobacter capsulatus
SB 1003]
gi|294474661|gb|ADE84049.1| polyribonucleotide nucleotidyltransferase [Rhodobacter capsulatus
SB 1003]
Length = 717
Score = 156 bits (394), Expect = 2e-36, Method: Composition-based stats.
Identities = 45/242 (18%), Positives = 89/242 (36%), Gaps = 17/242 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +R I + GS L G+T L TL +E++ +
Sbjct: 318 RIDGRDNKTVRPIVAEVGILPRTHGSALFTRGETQGLVVTTLGTGDDEQIIDALNGNFRS 377
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + + R+ G + RAL++V+ I + +
Sbjct: 378 NFLLHYNFPPYSVGEVGRVGSPGRREIGHGKL----AWRALQAVLPAPTDFPYTIRVVSE 433
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ G +++ D ++ + +L+ + D+
Sbjct: 434 ITESNGSSSMASVCGGSLSMMDAGVPLKAPVAGVAMGLILESD--------GRWAVLTDI 485
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T++G I +Q + A + + L AKD ++
Sbjct: 486 LGDEDHLGDMDFKVAGTENG-ITSLQMDIKVAGITPEIMQQALAQAKDGRMHILGEMSKA 544
Query: 238 IS 239
+S
Sbjct: 545 LS 546
Score = 106 bits (263), Expect = 4e-21, Method: Composition-based stats.
Identities = 30/239 (12%), Positives = 69/239 (28%), Gaps = 34/239 (14%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT----KHGWITAEYGMLPR 68
++L V++ A+GS + G+T ++ T ++ + G +P
Sbjct: 16 LTLETGKVARQADGSVIATLGETSVMANVTFAKEAKPGQDFFPLTVHYQEKYYAAGKIPG 75
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
R R + + R+I R R + ++
Sbjct: 76 GFFKR------EARPSEKETLVSRLIDRPCRPLFVPGFKNEVLVMATVLSCDLVNDPDIV 129
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGED------ 182
A+ A A G + A G G +++ +
Sbjct: 130 AMIAASAA-------------LTISGVPFMGPIGAARVGFAHGAYVLNPAMDDMTKLRDN 176
Query: 183 STIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
+D T ++ V+ A ++D + +++ +I L ++ +
Sbjct: 177 PEQRLDLVIAGTKD-AVMMVESEAYE--LTEDEMLGAVKFGHEQMQPVIDLI-IALAED 231
>gi|171741378|ref|ZP_02917185.1| hypothetical protein BIFDEN_00461 [Bifidobacterium dentium ATCC
27678]
gi|283455270|ref|YP_003359834.1| ribonuclease PH [Bifidobacterium dentium Bd1]
gi|306823668|ref|ZP_07457043.1| tRNA nucleotidyltransferase [Bifidobacterium dentium ATCC 27679]
gi|309803034|ref|ZP_07697135.1| tRNA nucleotidyltransferase [Bifidobacterium dentium JCVIHMP022]
gi|171276992|gb|EDT44653.1| hypothetical protein BIFDEN_00461 [Bifidobacterium dentium ATCC
27678]
gi|283101904|gb|ADB09010.1| rph Ribonuclease PH [Bifidobacterium dentium Bd1]
gi|304553375|gb|EFM41287.1| tRNA nucleotidyltransferase [Bifidobacterium dentium ATCC 27679]
gi|308220501|gb|EFO76812.1| tRNA nucleotidyltransferase [Bifidobacterium dentium JCVIHMP022]
Length = 254
Score = 156 bits (394), Expect = 2e-36, Method: Composition-based stats.
Identities = 108/229 (47%), Positives = 154/229 (67%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+R GR+ +++R + +TRR + EGS L++ G+T ++ TAT VP W +++ GW+T
Sbjct: 14 IRADGRKVDELRPVRITRRFTDVPEGSVLIECGNTRVMCTATFTSGVPRWRKDSGLGWVT 73
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEY MLPR+T +R RE+V G+ GGR+ EI R+IGR LR VVD+ ALG Q+ IDCDV+Q
Sbjct: 74 AEYAMLPRATADRTDRESVRGKIGGRTHEISRLIGRCLRGVVDMKALGENQVQIDCDVLQ 133
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+ITGA+VAL D ++ E + +VLK V+A+S G++ G P++DL Y
Sbjct: 134 ADGGTRTASITGAYVALVDAMRWAERHRHIKSADRVLKDCVSAVSVGVINGKPMLDLPYI 193
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIAD 229
EDS D N MT SG +E+QG+AE FS+ A+L+LA+ +
Sbjct: 194 EDSQAMTDMNVAMTGSGEFIEIQGTAEHRPFSRAELNALLDLAEQGNKE 242
>gi|187610328|sp|A1KT19|PNP_NEIMF RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|308388946|gb|ADO31266.1| putative polyribonucleotide nucleotidyltransferase [Neisseria
meningitidis alpha710]
gi|325132007|gb|EGC54706.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
M6190]
gi|325137838|gb|EGC60413.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
ES14902]
Length = 706
Score = 156 bits (394), Expect = 2e-36, Method: Composition-based stats.
Identities = 46/242 (19%), Positives = 93/242 (38%), Gaps = 18/242 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +R +++ V GS L G+T L ATL +E++ +
Sbjct: 316 RIDGRDTRTVRPLNIQTSVLPRTHGSALFTRGETQALAVATLGTSRDEQIIDALSGEYTD 375
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P STG + A R+ G + RAL +V+ S + + +
Sbjct: 376 RFMLHYNFPPYSTGEVGRMGAPKRREIGHGRL----AKRALLAVLPKPEDFSYTMRVVSE 431
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ G ++L ++ + +L+G+ A+ +
Sbjct: 432 ITESNGSSSMASVCGGCLSLLSAGVPLKAHVAGIAMGLILEGNKFAVLTD---------I 482
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T G + +Q + +++ L AK+ ++ K
Sbjct: 483 LGDEDHLGDMDFKVAGTTEG-VTALQMDIKIQGITKEIMQIALAQAKEARLHILDQMKAA 541
Query: 238 IS 239
++
Sbjct: 542 VA 543
Score = 89.5 bits (220), Expect = 4e-16, Method: Composition-based stats.
Identities = 37/228 (16%), Positives = 75/228 (32%), Gaps = 27/228 (11%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGMLPR 68
++L +++ A + V GDT +L T ++E + + T G +P
Sbjct: 16 VTLETGEIARQAAAAVKVSMGDTVVLVAVTTNKEVKEGQDFFPLTVDYLERTYAAGKIPG 75
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
R G+Q + R+I R +R + QI+ + + +
Sbjct: 76 GFFKR------EGKQSEKEILTSRLIDRPIRPLFPEGFYHDIQIVAMVVSVDPEIDSDIP 129
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+ GA A G + A G + G +++ E + +D
Sbjct: 130 AMLGASAA-------------LVLSGVPFAGPIGAARVGYVNGVYVLNPTKAELAKSQLD 176
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
T ++ V+ A+ +D + D++ I +
Sbjct: 177 LVVAGTSK-AVLMVESEAKI--LPEDVMLGAVVYGHDQMQVAINAINE 221
>gi|254471003|ref|ZP_05084406.1| polyribonucleotide nucleotidyltransferase protein [Pseudovibrio sp.
JE062]
gi|211960145|gb|EEA95342.1| polyribonucleotide nucleotidyltransferase protein [Pseudovibrio sp.
JE062]
Length = 712
Score = 156 bits (394), Expect = 2e-36, Method: Composition-based stats.
Identities = 44/243 (18%), Positives = 91/243 (37%), Gaps = 18/243 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR + +R I + A GS L G+T + ATL +E+ + TK
Sbjct: 315 RIDGRDLSTVRSIVSEVGMLPRAHGSSLFTRGETQAMVVATLGTGEDEQFIDLLEGTKKA 374
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + + R+ G + RA+ ++ + + +
Sbjct: 375 TFMLHYNFPPYSVGEAGRMGSPGRREIGHGKL----AWRAVNPMLPAHHDFPYTVRVVSE 430
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ GA ++L D ++ + + +G A+ +
Sbjct: 431 ITESNGSSSMASVCGASLSLMDAGVPLKAPVAGIAMGLIKEGERFAVLSD---------I 481
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D +++G I +Q + +++ L AK ++
Sbjct: 482 LGDEDHLGDMDFKVAGSENG-ITALQMDIKIDGITEEIMKVALEQAKGGRVHILGEMAKA 540
Query: 238 ISN 240
I+
Sbjct: 541 ITE 543
Score = 112 bits (279), Expect = 5e-23, Method: Composition-based stats.
Identities = 32/235 (13%), Positives = 72/235 (30%), Gaps = 28/235 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----HGWITAEYGML 66
R + L V++ A+G+ + +G+T +L T + + G +
Sbjct: 14 RPLILETGKVARQADGAVIATYGETKVLATVVSAKDAKPGQDFFPLTVNYQEKAYAAGRI 73
Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
P R GR R+I R +R + Q+++ +
Sbjct: 74 PGGFFKR------EGRPSEHETLTSRLIDRPIRPLFVDGYKNETQVVLTVLSHDLENAPD 127
Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
A+ GA A G + G + G +++ + +
Sbjct: 128 VVAMVGASAA-------------LTISGVPFMGPIGGARVGYINGEYVLNPTVDQMEETN 174
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
+D T+ ++ V+ A+ S++ + +I ++ +
Sbjct: 175 LDLVVAGTND-AVLMVESEAQE--LSEEVMLGAVMFGHKGFQPVIDAIIQ-LAEK 225
>gi|209966225|ref|YP_002299140.1| ribonuclease PH [Rhodospirillum centenum SW]
gi|209959691|gb|ACJ00328.1| ribonuclease PH [Rhodospirillum centenum SW]
Length = 239
Score = 156 bits (394), Expect = 2e-36, Method: Composition-based stats.
Identities = 122/210 (58%), Positives = 155/210 (73%), Gaps = 2/210 (0%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R SGR +QMR +SL VSK+AEGSCLV+FGDTH+L TA++E++VP ++R GW+TA
Sbjct: 3 RPSGRSLDQMRPVSLETNVSKHAEGSCLVRFGDTHVLCTASVEDRVPPFLRGQGQGWVTA 62
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
EYGMLPR+T R REA GRQ GR+QEIQR+IGR+LR+V D+ A+G + IDCDV+QA
Sbjct: 63 EYGMLPRATAERTDREAAKGRQTGRTQEIQRLIGRSLRAVTDVKAMGEITVKIDCDVLQA 122
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
DGGTRTAAITG++VAL L S F +Q L VAA+SCG+ G P++DLDY E
Sbjct: 123 DGGTRTAAITGSYVAL--ALAFRHLTSIGFLKAQPLTDSVAAVSCGLYQGAPVLDLDYAE 180
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATF 211
DS+ DANFV+T G IVE+QG+AE+ F
Sbjct: 181 DSSAQADANFVLTGKGGIVEIQGTAEKTPF 210
>gi|320355005|ref|YP_004196344.1| polyribonucleotide nucleotidyltransferase [Desulfobulbus
propionicus DSM 2032]
gi|320123507|gb|ADW19053.1| polyribonucleotide nucleotidyltransferase [Desulfobulbus
propionicus DSM 2032]
Length = 695
Score = 156 bits (394), Expect = 3e-36, Method: Composition-based stats.
Identities = 43/240 (17%), Positives = 83/240 (34%), Gaps = 10/240 (4%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MRL GR +R IS + A GS L G+T L TL + G +
Sbjct: 311 MRLDGRSFEDVRPISCEVGILPRAHGSALFTRGETQALVICTLGSERDEQHLEGLGGDVY 370
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
+ + V R + R + +V+ + + + +V++
Sbjct: 371 RRFMLHYNFPPFCVGEVRPLRGPSRRDIGHGTLARRGIEAVLPANDSFPYTLRVVSEVLE 430
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
++G + A + G +AL D ++ + + + +G + +
Sbjct: 431 SNGSSSMATVCGGSLALMDAGVPVKAPVSGVAMGLIKEGDQVVVLTD---------ILGD 481
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
ED D+D V T G I +Q + + L AK +++ + +S+
Sbjct: 482 EDHLGDMDFKVVGTRQG-ITGLQMDIKIEGVDRGIMNQALAQAKKGRIHILEKMEGALSS 540
Score = 111 bits (277), Expect = 8e-23, Method: Composition-based stats.
Identities = 49/254 (19%), Positives = 81/254 (31%), Gaps = 44/254 (17%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMW---IRNTKHGWITAEYGMLP 67
R I+ ++K A GS +V GDT +L T E + ++ G +P
Sbjct: 12 RTIAFETGKMAKQANGSVVVSSGDTKVLVTVVAESESKDMGFLPLTIEYQERMYAAGRIP 71
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
S R GR + R+I R LR + Q+I +
Sbjct: 72 GSYFRR-----EIGRPSEKEVLTCRLIDRPLRPLFPDGYSCETQLIATVFSADQEFDPDI 126
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
A+ GA +AL G VAA G + G +++ + +
Sbjct: 127 LAMNGASMALM-------------LSDIPFAGPVAAARVGYVDGQYVLNPSKKQLEKSQI 173
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ------------- 234
+ T S +V V+ + + ++D + A I LI LQ
Sbjct: 174 NLVVAGTRS-AVVMVE--GKASEMAEDTVLEAIFFAHAGIQPLIDLQINLREQAGKAKRE 230
Query: 235 ------KDVISNEV 242
+ +V
Sbjct: 231 VVAPTVNQALKEKV 244
>gi|285017812|ref|YP_003375523.1| polynucleotide phosphorylase [Xanthomonas albilineans GPE PC73]
gi|283473030|emb|CBA15535.1| probable polynucleotide phosphorylase protein [Xanthomonas
albilineans]
Length = 702
Score = 156 bits (394), Expect = 3e-36, Method: Composition-based stats.
Identities = 43/244 (17%), Positives = 89/244 (36%), Gaps = 18/244 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
+R+ GR + +R IS+ V GS L G+T + TL + +V +
Sbjct: 315 VRIDGRALDTVRPISVKAGVLPRTHGSALFTRGETQAIVVTTLGTARDGQVIDAVSGEYK 374
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P S G + A R+ G + R + +V+ I +
Sbjct: 375 ENFLFHYNFPPYSVGECGRFGAPKRREIGHGRL----AKRGVLAVMPTMEEFPYTIRVVS 430
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
++ +++G + A++ G+ +AL D ++ + V +G+ +
Sbjct: 431 EITESNGSSSMASVCGSSLALMDAGVPVKAPVAGIAMGLVKEGNDFVVLSD--------- 481
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T G + +Q + +++ L AK ++
Sbjct: 482 ILGDEDHLGDMDFKVAGTAEG-VSALQMDIKIEGITEEIMKQALAQAKAGRLHILGEMAS 540
Query: 237 VISN 240
+++
Sbjct: 541 ALTS 544
Score = 96.1 bits (237), Expect = 4e-18, Method: Composition-based stats.
Identities = 44/232 (18%), Positives = 79/232 (34%), Gaps = 27/232 (11%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTKHGWITAEYGMLPR 68
++L +++ A G+ +VK DT LL TA + E + + G +P
Sbjct: 15 VTLETGEIARQAGGAVIVKMDDTVLLVTAVAAKSAREGQDFFPLTVDYQEKFYAGGRIPG 74
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
R GR + I R+I R +R + QII + D A
Sbjct: 75 GFFKR------EGRATEKETLISRLIDRPIRPLFPEDYKNEVQIIATVMSMNPDIDGDIA 128
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+ GA AL G + A G G I++ + ++
Sbjct: 129 ALIGASAALSLAGT-------------PFNGPIGAAKVGYKNGEYILNPTVSDLKDSQLE 175
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
T + ++ V+ +E A S+D + + +I ++ +
Sbjct: 176 LVVAGTSN-AVLMVE--SEAALLSEDVMLGAVTFGHREMQKVINAINELTAE 224
>gi|295696164|ref|YP_003589402.1| polyribonucleotide nucleotidyltransferase [Bacillus tusciae DSM
2912]
gi|295411766|gb|ADG06258.1| polyribonucleotide nucleotidyltransferase [Bacillus tusciae DSM
2912]
Length = 727
Score = 156 bits (394), Expect = 3e-36, Method: Composition-based stats.
Identities = 52/244 (21%), Positives = 88/244 (36%), Gaps = 18/244 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56
MR GR +++R IS + GS L G T L+ T + ++ + +
Sbjct: 310 MRPDGRALDEIRPISCEVGLLPRTHGSGLFTRGQTQALSVCTLGALGDVQILDGLDLEES 369
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P S G A S R G RAL V+ I +
Sbjct: 370 KRFMHHYNFPPFSVGEARPIRAPSRRDIGHGALG----ERALEPVIPSEEEFPYTIRLVS 425
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V++++G T A+I G+ +AL D ++ + V +G AI
Sbjct: 426 EVLESNGSTSQASICGSTLALMDAGVPIKAPVAGVAMGLVKEGDRVAILTD--------- 476
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T +G + +Q + ++D + L A ++ +
Sbjct: 477 IQGMEDHLGDMDFKVAGTAAG-VTALQMDIKIKGLTRDILASALEQAHRGRMFILGKMLE 535
Query: 237 VISN 240
VI
Sbjct: 536 VIQQ 539
Score = 101 bits (250), Expect = 1e-19, Method: Composition-based stats.
Identities = 39/228 (17%), Positives = 77/228 (33%), Gaps = 26/228 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATL---EEKVPMWIRNTKHGWITAEYGMLP 67
R + L ++K A + V++GDT +L T T+ + + + + G +P
Sbjct: 12 RRLVLETGKLAKQATAAVTVRYGDTVVLATVTMSKEPKDLDFFPLTVNYEERLYAVGKIP 71
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R GR ++ R+I R +R + Q++ + D
Sbjct: 72 GGFIKR------EGRPSEKAILASRLIDRPIRPLFPEGFRNEVQVVALVLSVDQDCPPEI 125
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
A + G A G +A + G + G +V+ + D+
Sbjct: 126 AGMIGTSAA-------------LTISPIPFDGPIAGLVVGRVDGQFVVNPTVAQTEKSDM 172
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
+ S +V V+ A + + +++ LI LQ+
Sbjct: 173 HLVVAGSRS-AVVMVEAGANEVP--ESEMLDAIMFGHEQLQPLIDLQE 217
>gi|260574490|ref|ZP_05842494.1| Polyribonucleotide nucleotidyltransferase [Rhodobacter sp. SW2]
gi|259023386|gb|EEW26678.1| Polyribonucleotide nucleotidyltransferase [Rhodobacter sp. SW2]
Length = 711
Score = 156 bits (394), Expect = 3e-36, Method: Composition-based stats.
Identities = 44/241 (18%), Positives = 88/241 (36%), Gaps = 17/241 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +R I+ + GS L G+T L TL +E++ +
Sbjct: 318 RIDGRDNKTVRPITSETGILPRTHGSALFTRGETQGLVITTLGTGEDEQIIDALHGNSRS 377
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + R+ G + RAL++V+ + I + +
Sbjct: 378 NFLLHYNFPPYSVGEVGRFGPPGRREIGHGKL----AWRALQAVLPPATEFPYTIRVVSE 433
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ G +++ D ++ + +L+ + D+
Sbjct: 434 ITESNGSSSMASVCGGSLSMMDAGVPLKAPVAGVAMGLILEDD--------GRFAVLTDI 485
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T++G I +Q + A + L AKD ++
Sbjct: 486 LGDEDHLGDMDFKVAGTENG-ITSLQMDIKIAGITPAIMEQALAQAKDGRLHILGEMSKA 544
Query: 238 I 238
+
Sbjct: 545 L 545
Score = 103 bits (257), Expect = 2e-20, Method: Composition-based stats.
Identities = 31/228 (13%), Positives = 62/228 (27%), Gaps = 25/228 (10%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGN 72
++L V++ A+GS + G+T ++ T + E
Sbjct: 16 LTLETGKVARQADGSVIATLGETSVMANVTFAKTAKPGQDFFPLTVHYQERYYAAGKVP- 74
Query: 73 RVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITG 132
R + R+I R +R + +I+ A+
Sbjct: 75 -GGFFKREARPSEKETLTSRLIDRPIRPLFVDGFKNEVLLIVTVLSHDLVNEPDILAMIA 133
Query: 133 AWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDST------ID 186
A A G + A G G +++ D +
Sbjct: 134 ASAA-------------LTISGVPFMGPIGAARVGFSKGAYVLNPDVEDMQKLRENPEQR 180
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
+D T ++ V+ A S+D + + + +I L
Sbjct: 181 LDLVIAGTKD-AVMMVESEAYE--LSEDEMLGAVKFGHEAMQPVIDLI 225
>gi|87200495|ref|YP_497752.1| polynucleotide phosphorylase/polyadenylase [Novosphingobium
aromaticivorans DSM 12444]
gi|123736106|sp|Q2G5F5|PNP_NOVAD RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|87136176|gb|ABD26918.1| Polyribonucleotide nucleotidyltransferase [Novosphingobium
aromaticivorans DSM 12444]
Length = 772
Score = 156 bits (394), Expect = 3e-36, Method: Composition-based stats.
Identities = 49/243 (20%), Positives = 89/243 (36%), Gaps = 18/243 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKHG 57
R+ GR Q+R I GS L G+T + T TL E++ + ++
Sbjct: 315 RIDGRTTTQVRPIEAIVGFLPRTHGSSLFTRGETQAICTTTLGTKDAEQMIDGLEGLRYE 374
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + A R+ G + RAL V+ I I D
Sbjct: 375 NFMLHYNFPPYSVGEVGRFGAPGRREVGHGKL----AWRALHPVLPTKEEFPYTIRILSD 430
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A + G +++ D ++ + + +L+G A+ +
Sbjct: 431 ITESNGSSSMATVCGGCLSMMDAGVPVKRPVSGIAMGLILEGDKFAVLSD---------I 481
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T G I +Q + A +++ F L A + A ++
Sbjct: 482 LGDEDHLGDMDFKVAGTSEG-ITTMQMDIKVAGITREIFEVALRQASEGRAHILGEMTKA 540
Query: 238 ISN 240
+
Sbjct: 541 LGE 543
Score = 101 bits (252), Expect = 8e-20, Method: Composition-based stats.
Identities = 34/233 (14%), Positives = 72/233 (30%), Gaps = 27/233 (11%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT----KHGWITAEYGMLPR 68
++L +++ A+G+ L +G+T +L T + V + + G +P
Sbjct: 16 LTLETGRIARQADGAVLATYGETVVLCAVTAAKSVKEGQDFFPLTVHYQEKYSAAGRIPG 75
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
R + + + R+I R +R + +I +
Sbjct: 76 GFFKRERGA------TEKETLVSRLIDRPVRPLFPEGFYNEINVIAQVLSYDGETEPDIV 129
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+ A A G +AA G + G +++
Sbjct: 130 AMIAASAA-------------LTISGVPFMGPIAAARVGFIEGEYVLNPKQDVALADGRL 176
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
V ++ V+ A+ S+D + A D I +I ++ +
Sbjct: 177 DLVVAATDTAVMMVESEAKE--LSEDEMLGAVLFAHDEIKKVIGAIIQ-LAEK 226
>gi|289207914|ref|YP_003459980.1| polyribonucleotide nucleotidyltransferase [Thioalkalivibrio sp.
K90mix]
gi|288943545|gb|ADC71244.1| polyribonucleotide nucleotidyltransferase [Thioalkalivibrio sp.
K90mix]
Length = 695
Score = 156 bits (394), Expect = 3e-36, Method: Composition-based stats.
Identities = 43/244 (17%), Positives = 91/244 (37%), Gaps = 18/244 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +R IS+ V GS + G+T L ATL + +V I +
Sbjct: 314 RIDGRDNKTVRPISVQTSVLPRTHGSAVFTRGETQALVVATLGTDRDAQVIDAIEGERRD 373
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P TG + R+ G + R + +V+ + + + +
Sbjct: 374 RFMLHYNFPPYCTGETGFVGSPKRREIGHGRL----AKRGVAAVMPKAEEFPYVVRVVSE 429
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ G +AL D ++ + + +G A+ +
Sbjct: 430 ITESNGSSSMASVCGTSLALMDAGVPLKAPVAGIAMGLIKEGDRFAVLSD---------I 480
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T +G + +Q + +++ L A++ ++ +V
Sbjct: 481 LGDEDHLGDMDFKVAGTTNG-VTALQMDIKIDGITREIMEQALAQAREGRMHILGCMNEV 539
Query: 238 ISNE 241
+ +
Sbjct: 540 LPSH 543
Score = 84.9 bits (208), Expect = 9e-15, Method: Composition-based stats.
Identities = 39/232 (16%), Positives = 76/232 (32%), Gaps = 27/232 (11%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGMLPR 68
++ +++ A G+ LV +T +L TA E + + T G +P
Sbjct: 14 VTFETGDIARQASGAVLVNMAETVVLVTAVARKEAEPGRDFFPLTVNYQERTYAAGKIPG 73
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
R GR + R+I R +R + QI+ I D
Sbjct: 74 GFFKR------EGRPNEKETLTSRLIDRPIRPLFPEGFKNETQIVATVMSINPDVDPDIP 127
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+ GA AL + A G G +++ Y D+D
Sbjct: 128 ALLGASAALALSGVPFAG-------------PIGAARVGYRAGEYLLNPTYSALEDSDLD 174
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
T+ ++ V+ A + ++ + +++ I+ K++ +
Sbjct: 175 LVVAGTEH-AVLMVESEASELS--EEAMLGAVMFGHEQMQAAIQAIKELAAE 223
>gi|227875768|ref|ZP_03993896.1| ribonuclease PH [Mobiluncus mulieris ATCC 35243]
gi|269977414|ref|ZP_06184386.1| ribonuclease PH [Mobiluncus mulieris 28-1]
gi|306819041|ref|ZP_07452758.1| tRNA nucleotidyltransferase [Mobiluncus mulieris ATCC 35239]
gi|307700330|ref|ZP_07637370.1| tRNA nucleotidyltransferase [Mobiluncus mulieris FB024-16]
gi|227843710|gb|EEJ53891.1| ribonuclease PH [Mobiluncus mulieris ATCC 35243]
gi|269934330|gb|EEZ90892.1| ribonuclease PH [Mobiluncus mulieris 28-1]
gi|304648234|gb|EFM45542.1| tRNA nucleotidyltransferase [Mobiluncus mulieris ATCC 35239]
gi|307614541|gb|EFN93770.1| tRNA nucleotidyltransferase [Mobiluncus mulieris FB024-16]
Length = 252
Score = 156 bits (394), Expect = 3e-36, Method: Composition-based stats.
Identities = 111/234 (47%), Positives = 153/234 (65%), Gaps = 2/234 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR GR+ +Q+R ++ EG+ L++ G+T +L A+L E VP W ++T GW+T
Sbjct: 1 MRKDGRRIDQLRNMAFHLDWVSTPEGAVLIEAGNTRVLCCASLSEGVPRWRKDTGLGWVT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEY MLPR+T R RE+V G+ GGR+QEI R+IGR+LR+ VD +ALG I IDCDV+Q
Sbjct: 61 AEYSMLPRATATRSTRESVKGKLGGRTQEISRLIGRSLRAGVDYTALGENTIEIDCDVLQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTAAITGAW+ALH ++ + F + LK V AIS G++ G +DL Y
Sbjct: 121 ADGGTRTAAITGAWIALHRAIEEGKTS--GFIPGEPLKDSVCAISVGIIDGEARLDLPYE 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
ED + D N VMT +G ++EVQG+AE FS++ +L+LA+ ADL + Q
Sbjct: 179 EDVRAETDMNVVMTGTGKLIEVQGTAEGEPFSREDLSKLLDLAQGGCADLTRAQ 232
>gi|238021429|ref|ZP_04601855.1| hypothetical protein GCWU000324_01329 [Kingella oralis ATCC 51147]
gi|237868409|gb|EEP69415.1| hypothetical protein GCWU000324_01329 [Kingella oralis ATCC 51147]
Length = 716
Score = 156 bits (394), Expect = 3e-36, Method: Composition-based stats.
Identities = 44/242 (18%), Positives = 92/242 (38%), Gaps = 18/242 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +R I++ V GS L G+T L ATL +E++ +
Sbjct: 316 RIDGRDTRTVRPINIQTNVLPRTHGSALFTRGETQALAVATLGTSRDEQIIDALSGEYTD 375
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P STG + A R+ G + RAL +V+ + + + +
Sbjct: 376 RFMLHYNFPPYSTGEVGRVGAPKRREIGHGRL----AKRALVAVLPDPEDFNYTMRVVSE 431
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ G ++L ++ + +L+ + A+ +
Sbjct: 432 ITESNGSSSMASVCGGCLSLLSAGVPLKAHVAGIAMGLILEDNKFAVLTD---------I 482
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T G + +Q + +++ L AK+ ++ +
Sbjct: 483 LGDEDHLGDMDFKVAGTTEG-VTALQMDIKIQGITKEIMQIALAQAKEARLHILSQMQAA 541
Query: 238 IS 239
++
Sbjct: 542 VA 543
Score = 99.5 bits (246), Expect = 3e-19, Method: Composition-based stats.
Identities = 40/234 (17%), Positives = 80/234 (34%), Gaps = 28/234 (11%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGMLPR 68
++L +++ A G+ V GDT +L T ++E + + T G +P
Sbjct: 16 VTLETGEIARQAAGAVKVSMGDTVVLVAVTTNKEVKEGQDFFPLTVDYLERTYAAGKIPG 75
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
R G+Q + R+I R +R + QI+ + +
Sbjct: 76 GFFKR------EGKQSEKEILTSRLIDRPIRPLFPEGFYHDIQIVAMVISCDPEIDSDIP 129
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+ GA A G + A G G +++ E +T +D
Sbjct: 130 AMIGASAA-------------LVLSGVPFAGPIGAARVGYANGQYLLNPSKTELATSQLD 176
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNEV 242
T ++ V+ A +D + +++ +I + +++EV
Sbjct: 177 LVVAGTKQ-AVLMVESEANI--LPEDVMLGAVVFGHEQMQAVINAINE-LADEV 226
>gi|289423077|ref|ZP_06424892.1| polyribonucleotide nucleotidyltransferase [Peptostreptococcus
anaerobius 653-L]
gi|289156408|gb|EFD05058.1| polyribonucleotide nucleotidyltransferase [Peptostreptococcus
anaerobius 653-L]
Length = 696
Score = 156 bits (394), Expect = 3e-36, Method: Composition-based stats.
Identities = 42/244 (17%), Positives = 80/244 (32%), Gaps = 18/244 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56
+R R +++R I + GS + G T +L T + + + +
Sbjct: 316 VRPDNRALDEIRPIWCETGLIPRTHGSAIFTRGQTQVLNVTTLGALGDGQKLDGLDEEDN 375
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y S G R+ G RAL V+ I +
Sbjct: 376 KRYMHHYNFPAYSVGETRPSRGPGRREIGHGAL----AERALVPVIPSQDDFPYAIRLVS 431
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V+ ++G T A++ + ++L D ++D + + A+
Sbjct: 432 EVLSSNGSTSQASVCASTLSLLDAGVPIKDMVAGIAMGLIKHHDKVAVLSD--------- 482
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T+ G + +Q + A + L AK ++ K
Sbjct: 483 IQGMEDHLGDMDFKVAGTEHG-VTAIQMDIKIAGIDEQVLRQALKQAKAGRMHILGEMKK 541
Query: 237 VISN 240
VI+
Sbjct: 542 VITE 545
Score = 90.3 bits (222), Expect = 2e-16, Method: Composition-based stats.
Identities = 35/233 (15%), Positives = 80/233 (34%), Gaps = 27/233 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT----KHGWITAEYGML 66
R++S+ + + G+C++++GDT L+ AT + I G +
Sbjct: 14 RKLSVEVGKICEMTNGNCIMRYGDTMLMVNATKSAEPRDGIDFFPLSVDFEEKLYSVGKI 73
Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
P R G+ ++ R+I R +R + Q++ + D
Sbjct: 74 PGGFLKR------EGKASEKAVLTSRLIDRPIRPLFPEGFRNDVQVVATVLSVDQDCTPD 127
Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
A+ G+ +A G ++ G++ G +V+ +
Sbjct: 128 IVAMIGSSIA-------------LSISDIPFNGPTGSVLIGLVDGEFVVNPTQEQREVST 174
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
+ T I+ V+ AE + + A + I ++ +++++
Sbjct: 175 LHLVVSGTKD-AIMMVEAGAEE--IDDEIVLNAILFAHEEIKKIVAFIEEIVA 224
>gi|299822585|ref|ZP_07054471.1| tRNA nucleotidyltransferase [Listeria grayi DSM 20601]
gi|299816114|gb|EFI83352.1| tRNA nucleotidyltransferase [Listeria grayi DSM 20601]
Length = 248
Score = 156 bits (394), Expect = 3e-36, Method: Composition-based stats.
Identities = 108/239 (45%), Positives = 151/239 (63%), Gaps = 1/239 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR GR + ++R+I L + + EGS L+ GDT ++ +A++EEKVP ++R GWI+
Sbjct: 1 MRHDGRNKGELRKIELIKDYLIHPEGSVLISTGDTKVICSASIEEKVPPFMRGEGKGWIS 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEY MLPR+T R RE+ G+ GGR+ EIQR+IGRALR+VVDL ALG R I IDCDVIQ
Sbjct: 61 AEYAMLPRATTTRNIRESSKGKVGGRTMEIQRLIGRALRAVVDLDALGERTIWIDCDVIQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+ITGA+VAL ++ + + A + ++DL+Y
Sbjct: 121 ADGGTRTASITGAFVALALAIEKLYQTVPLA-KFPIKDFLAATSVGILENEGAVLDLNYI 179
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
EDS +VD N VMT +G VE+QG+ E ATFS+ ++ L K I L +Q++++
Sbjct: 180 EDSAAEVDMNIVMTGAGQFVELQGTGEEATFSETDLQELITLGKKGIQALNIMQQEILG 238
>gi|22298135|ref|NP_681382.1| ribonuclease PH [Thermosynechococcus elongatus BP-1]
gi|22294313|dbj|BAC08144.1| ribonuclease PH [Thermosynechococcus elongatus BP-1]
Length = 249
Score = 156 bits (394), Expect = 3e-36, Method: Composition-based stats.
Identities = 101/238 (42%), Positives = 147/238 (61%), Gaps = 4/238 (1%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R GRQ ++R R +++A GS L + G T +L T + +E VP ++ T GW+TA
Sbjct: 12 RPDGRQPQELRSHQFQRHFTQFALGSVLAQAGQTQVLCTVSFKEGVPKFLEGTGQGWLTA 71
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
EY MLP +T R ++E + GR+QEIQR+IGR+LRS VDLS LG +I+D DV+QA
Sbjct: 72 EYRMLPSAT--RPRQEREFLKLSGRTQEIQRLIGRSLRSAVDLSLLGECTLIVDADVLQA 129
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
D GTR+ AITG ++AL D L + + L+ VAA+S G++ P +DL Y E
Sbjct: 130 DAGTRSLAITGGYIALVDALSALLQQGVLRKS--PLRHQVAAVSVGLIDDEPYLDLSYAE 187
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
D VD N VMT SG +EVQG+AE +F + +L++A+ I +LI++Q+ V++
Sbjct: 188 DVAASVDFNVVMTGSGQFIEVQGTAEMGSFDRGTLDRLLDVARQGIQELIEIQQRVLA 245
>gi|297242886|ref|ZP_06926824.1| ribonuclease PH [Gardnerella vaginalis AMD]
gi|296889097|gb|EFH27831.1| ribonuclease PH [Gardnerella vaginalis AMD]
Length = 253
Score = 156 bits (394), Expect = 3e-36, Method: Composition-based stats.
Identities = 105/229 (45%), Positives = 151/229 (65%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+R+ GR +++R + +TR+ + EGS L++ G+T ++ TAT VP W R++ GW+T
Sbjct: 14 IRVDGRNVDELRPVRITRKFTDVPEGSVLIECGNTRVMCTATFTVGVPRWRRDSGLGWVT 73
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEY MLPR+T R RE+V G+ GGR+ EI R+IGR LR VVD+ A+G QI IDCDV+Q
Sbjct: 74 AEYSMLPRATAERTDRESVRGKIGGRTHEISRLIGRCLRGVVDMKAMGECQIQIDCDVLQ 133
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA++TGA+VAL D L E + + V+K ++A+S G++ G P++DL Y
Sbjct: 134 ADGGTRTASVTGAYVALVDALNWAEKNGHIRSAASVIKDSISAVSVGVINGTPMLDLPYV 193
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIAD 229
EDS D N MT SG +E+QG+AE F++D +L+LA +
Sbjct: 194 EDSQAMTDMNVAMTGSGTFIEIQGTAEHRPFNRDELNTLLDLATKGNRE 242
>gi|148259386|ref|YP_001233513.1| polynucleotide phosphorylase/polyadenylase [Acidiphilium cryptum
JF-5]
gi|326402607|ref|YP_004282688.1| polyribonucleotide nucleotidyltransferase [Acidiphilium multivorum
AIU301]
gi|187470957|sp|A5FVG2|PNP_ACICJ RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|146401067|gb|ABQ29594.1| Polyribonucleotide nucleotidyltransferase [Acidiphilium cryptum
JF-5]
gi|325049468|dbj|BAJ79806.1| polyribonucleotide nucleotidyltransferase [Acidiphilium multivorum
AIU301]
Length = 717
Score = 156 bits (394), Expect = 3e-36, Method: Composition-based stats.
Identities = 43/242 (17%), Positives = 86/242 (35%), Gaps = 18/242 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
+R+ GR +R I V GS L G+T L ATL +E++ I
Sbjct: 315 IRIDGRDTRTVRPILAEVGVLPRTHGSALFTRGETQALVVATLGTAQDEQIVDAIEGEYR 374
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P S G + + R+ G + RA+ ++ + +
Sbjct: 375 ERFLLHYNFPPFSVGETGRVGSPGRREVGHGKL----AWRAIHPLLPGKDKFPYTLRVVS 430
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
++ +++G + A + G +AL D + + + + A+
Sbjct: 431 EITESNGSSSMATVCGTSLALMDAGVPLPRPVAGIAMGLIKEDKGFAVLSD--------- 481
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T++G + +Q + + + + L+ AKD ++
Sbjct: 482 ILGDEDHLGDMDFKVAGTEAG-VTSLQMDIKITSITPEIMKIALDQAKDGRLHILGEMSK 540
Query: 237 VI 238
+
Sbjct: 541 AL 542
Score = 107 bits (267), Expect = 1e-21, Method: Composition-based stats.
Identities = 38/235 (16%), Positives = 76/235 (32%), Gaps = 28/235 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----HGWITAEYGML 66
R++ L V++ A+G+ + +GDT +L T V + G +
Sbjct: 16 RKLILETGKVARQADGAVVASYGDTVVLATVVGARSVKPGQDFFPLTVNYQEKFYAAGRI 75
Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
P R GR R R+I R +R + Q+I++ +
Sbjct: 76 PGGFFKR------EGRPTERETLTSRLIDRPIRPLFPHGFRNEVQVIVNVLSHDLENEPD 129
Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
++ A A G V A G + G I++ + +
Sbjct: 130 IVSLVAASAA-------------LTLSGIPFFGPVGAARIGYIDGEYILNPTSAQIAESR 176
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
+D T+ G ++ V+ A S++ + +I+ + ++
Sbjct: 177 LDLVLAGTEEG-VLMVESEAHE--LSEETMLGAVTFGHAAFQPVIQAIIE-LAEH 227
>gi|325140088|gb|EGC62617.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
CU385]
Length = 706
Score = 156 bits (393), Expect = 3e-36, Method: Composition-based stats.
Identities = 46/242 (19%), Positives = 93/242 (38%), Gaps = 18/242 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +R +++ V GS L G+T L ATL +E++ +
Sbjct: 316 RIDGRDTRTVRPLNIQTSVLPRTHGSALFTRGETQALAVATLGTSRDEQIIDALSGEYTD 375
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P STG + A R+ G + RAL +V+ S + + +
Sbjct: 376 RFMLHYNFPPYSTGEVGRMGAPKRREIGHGRL----AKRALLAVLPKPEDFSYTMRVVSE 431
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ G ++L ++ + +L+G+ A+ +
Sbjct: 432 ITESNGSSSMASVCGGCLSLLSAGVPLKAHVAGIAMGLILEGNKFAVLTD---------I 482
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T G + +Q + +++ L AK+ ++ K
Sbjct: 483 LGDEDHLGDMDFKVAGTTEG-VTALQMDIKIQGITKEIMQIALAQAKEARLHILDQMKAA 541
Query: 238 IS 239
++
Sbjct: 542 VA 543
Score = 89.1 bits (219), Expect = 4e-16, Method: Composition-based stats.
Identities = 37/228 (16%), Positives = 75/228 (32%), Gaps = 27/228 (11%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGMLPR 68
++L +++ A + V GDT +L T ++E + + T G +P
Sbjct: 16 VTLETGEIARQAAAAVKVSMGDTVVLVAVTTNKEVKEGQDFFPLTVDYLERTYAAGKIPG 75
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
R G+Q + R+I R +R + QI+ + + +
Sbjct: 76 GFFKR------EGKQSEKEILTSRLIDRPIRPLFPEGFYHDIQIVAMVVSVDPEIDSDIP 129
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+ GA A G + A G + G +++ E + +D
Sbjct: 130 AMLGASAA-------------LVLSGVPFAGPIGAARVGYVNGVYVLNPTKAELAKSQLD 176
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
T ++ V+ A+ +D + D++ I +
Sbjct: 177 LVVAGTSK-AVLMVESEAKI--LPEDVMLGAVVYGHDQMQVAINAINE 221
>gi|304387933|ref|ZP_07370106.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
ATCC 13091]
gi|304338030|gb|EFM04167.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
ATCC 13091]
Length = 706
Score = 156 bits (393), Expect = 3e-36, Method: Composition-based stats.
Identities = 46/242 (19%), Positives = 93/242 (38%), Gaps = 18/242 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +R +++ V GS L G+T L ATL +E++ +
Sbjct: 316 RIDGRDTRTVRPLNIQTSVLPRTHGSALFTRGETQALAVATLGTSRDEQIIDALSGEYTD 375
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P STG + A R+ G + RAL +V+ S + + +
Sbjct: 376 RFMLHYNFPPYSTGEVGRMGAPKRREIGHGRL----AKRALLAVLPKPEDFSYTMRVVSE 431
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ G ++L ++ + +L+G+ A+ +
Sbjct: 432 ITESNGSSSMASVCGGCLSLLSAGVPLKAHVAGIAMGLILEGNKFAVLTD---------I 482
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T G + +Q + +++ L AK+ ++ K
Sbjct: 483 LGDEDHLGDMDFKVAGTTEG-VTALQMDIKIQGITKEIMQIALAQAKEARLHILDQMKAA 541
Query: 238 IS 239
++
Sbjct: 542 VA 543
Score = 89.5 bits (220), Expect = 4e-16, Method: Composition-based stats.
Identities = 37/228 (16%), Positives = 75/228 (32%), Gaps = 27/228 (11%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGMLPR 68
++L +++ A + V GDT +L T ++E + + T G +P
Sbjct: 16 VTLETGEIARQAAAAVKVSMGDTVVLVAVTTNKEVKEGQDFFPLTVDYLERTYAAGKIPG 75
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
R G+Q + R+I R +R + QI+ + + +
Sbjct: 76 GFFKR------EGKQSEKEILTSRLIDRPIRPLFPEGFYHDIQIVAMVVSVDPEIDSDIP 129
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+ GA A G + A G + G +++ E + +D
Sbjct: 130 AMLGASAA-------------LVLSGVPFAGPIGAARVGYINGVYVLNPTKAELAKSQLD 176
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
T ++ V+ A+ +D + D++ I +
Sbjct: 177 LVVAGTSK-AVLMVESEAKI--LPEDVMLGAVVYGHDQMQVAINAINE 221
>gi|255659135|ref|ZP_05404544.1| tRNA nucleotidyltransferase [Mitsuokella multacida DSM 20544]
gi|260848582|gb|EEX68589.1| tRNA nucleotidyltransferase [Mitsuokella multacida DSM 20544]
Length = 248
Score = 156 bits (393), Expect = 3e-36, Method: Composition-based stats.
Identities = 109/241 (45%), Positives = 148/241 (61%), Gaps = 3/241 (1%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R R + +R + R KY GS L++ G+T ++ A++E++VP ++R T GWI A
Sbjct: 3 RPDRRTADALRPYEMHRHFQKYPAGSVLIEMGNTKVICAASIEDRVPFFLRGTGEGWIAA 62
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
EY +LP +T R +REAV G+Q GR+QEI+R+IGR+LRSVVD ALG R I+IDCDVIQA
Sbjct: 63 EYSLLPSATETRTQREAVRGKQSGRTQEIERLIGRSLRSVVDTKALGERTIMIDCDVIQA 122
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
DGGTRTA+ITGA+VAL + + F + L +S G PI+DL Y E
Sbjct: 123 DGGTRTASITGAFVALVEACASFYEKGKIFPVKDFLSAISVGVSHE---GVPILDLCYEE 179
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
DS VD N VMT G VEVQG+ E F+ + +L L + +LI +KDV+ E
Sbjct: 180 DSRAIVDMNVVMTGVGRFVEVQGTGEGRPFTHEELGELLALGEKGCRELISYEKDVLGGE 239
Query: 242 V 242
+
Sbjct: 240 L 240
>gi|254477352|ref|ZP_05090738.1| 3' exoribonuclease family, domain 2, protein [Ruegeria sp. R11]
gi|214031595|gb|EEB72430.1| 3' exoribonuclease family, domain 2, protein [Ruegeria sp. R11]
Length = 705
Score = 156 bits (393), Expect = 3e-36, Method: Composition-based stats.
Identities = 45/243 (18%), Positives = 90/243 (37%), Gaps = 17/243 (6%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +R+I + GS L G+T L TL +E+ +
Sbjct: 310 RIDGRDTTTVRQIVSETGMLPRTHGSALFTRGETQALAVTTLGTGDDEQFIDALHGNFKS 369
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + + R+ G + RAL++V+ I + +
Sbjct: 370 NFLLHYNFPPYSVGEVGRVGSPGRREIGHGKL----AWRALQAVLPAPTDFPYTIRVVSE 425
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ G +++ D ++ + +L+ + + D+
Sbjct: 426 ITESNGSSSMASVCGGSLSMMDAGVPLKAPVAGVAMGLILEDDGS--------YAILSDI 477
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T++G I +Q + A + + L AKD ++
Sbjct: 478 LGDEDHLGDMDFKVAGTENG-ITSLQMDIKVAGITPEIMEKALAQAKDGRMHILGEMSKA 536
Query: 238 ISN 240
+S
Sbjct: 537 LSE 539
Score = 99 bits (247), Expect = 3e-19, Method: Composition-based stats.
Identities = 30/224 (13%), Positives = 62/224 (27%), Gaps = 17/224 (7%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGN 72
++L V++ A+G+ + G+T ++ T ++ E
Sbjct: 8 LTLETGKVARQADGTVIATLGETSVMANVTFAKEQKPGQDFFPLTVHYQEKYYAAGKVP- 66
Query: 73 RVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITG 132
R + R+I R +R + ++ A+
Sbjct: 67 -GGFFKREARPTEKETLTARLIDRPIRPLFVPGFKNEVLVMCTVLSHDLVNDPDIVAMIA 125
Query: 133 AWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID--VDAN 190
A AL + G P VD + +D
Sbjct: 126 ASAALTISGAPFMGPIAGA---------RVGFTDGEYVLNPTVDDMQDLRLNPEQRLDLV 176
Query: 191 FVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
T + ++ V+ A ++ +N A ++I +I L
Sbjct: 177 VAGTKN-AVMMVESEAYE--LTEAEMLGAVNFAHEQIQPVIDLI 217
>gi|309781847|ref|ZP_07676580.1| polyribonucleotide nucleotidyltransferase [Ralstonia sp. 5_7_47FAA]
gi|308919488|gb|EFP65152.1| polyribonucleotide nucleotidyltransferase [Ralstonia sp. 5_7_47FAA]
Length = 722
Score = 156 bits (393), Expect = 3e-36, Method: Composition-based stats.
Identities = 49/242 (20%), Positives = 95/242 (39%), Gaps = 18/242 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +R I + V A GS L G+T L ATL +E++ ++
Sbjct: 315 RIDGRDTRTVRPIEIRSSVLPRAHGSALFTRGETQALVVATLGTKSDEQIIDALQGEYRD 374
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y M P +TG + + R+ G + RAL V+ + I + +
Sbjct: 375 RFMLHYNMPPFATGETGRVGSPKRREVGHGRL----AKRALIPVLPKDDEFAYTIRLVSE 430
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ G +AL D ++ + +L+ + A+ +
Sbjct: 431 ITESNGSSSMASVCGGSLALMDAGVPLKAHVAGVAMGLILEDNKFAVLTD---------I 481
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D TD+G I +Q + +++ L AK+ ++ +
Sbjct: 482 LGDEDHLGDMDFKVAGTDAG-ITALQMDIKVQGITKEIMQVALAQAKEGRLHILGKMQAA 540
Query: 238 IS 239
+
Sbjct: 541 MG 542
Score = 95.3 bits (235), Expect = 7e-18, Method: Composition-based stats.
Identities = 36/233 (15%), Positives = 78/233 (33%), Gaps = 27/233 (11%)
Query: 13 EISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT----KHGWITAEYGMLP 67
++ + +++ A G+ L+ DT +L T + + T G +P
Sbjct: 15 KVRMETGEIARQASGAVLLDMDDTVVLATVVGAKNPKPGQDFFPLTVDYLEKTYAAGKIP 74
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R GR R+I R LR + Q++I + +
Sbjct: 75 GGFFKR------EGRPSENETLTSRLIDRPLRPLFPEGFYNEVQVVIHVLSMNPEVPADI 128
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
A+ A AL G V A G G +++ + + + D+
Sbjct: 129 PALVAASAALAVSG-------------LPFNGPVGAARVGYKDGQYLLNPNRAQLAHSDL 175
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
D T+ ++ V+ A++ S++ + +++ I +++ +
Sbjct: 176 DLVVAGTER-AVLMVESEAQQ--LSEEVMLGAVVYGHEQMQIAINAIHELVRD 225
>gi|28493589|ref|NP_787750.1| ribonuclease PH [Tropheryma whipplei str. Twist]
gi|28572785|ref|NP_789565.1| ribonuclease PH [Tropheryma whipplei TW08/27]
gi|28410918|emb|CAD67303.1| ribonuclease PH [Tropheryma whipplei TW08/27]
gi|28476631|gb|AAO44719.1| ribonuclease PH [Tropheryma whipplei str. Twist]
Length = 256
Score = 156 bits (393), Expect = 3e-36, Method: Composition-based stats.
Identities = 106/238 (44%), Positives = 150/238 (63%), Gaps = 2/238 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+R + R +++R + + R + YAEGS L+ FG+T +L AT + VP ++R + GWIT
Sbjct: 20 LRKNSRAHDEIRPVKIIRGWNIYAEGSALIAFGNTRVLCNATFQRGVPPFLRGQRSGWIT 79
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEY MLPRS R RE+V G+ GRS EI R+IGR++R+++D AL II+DCDV+Q
Sbjct: 80 AEYAMLPRSGTERSDRESVKGKISGRSHEISRLIGRSMRAILDRYALEENTIILDCDVLQ 139
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTAAITG+++AL+D L + K L V+A+S G++ +DLDY
Sbjct: 140 ADGGTRTAAITGSYIALYDALVW--AKNQKILSKHPLTDSVSAVSVGLVGDQIFLDLDYS 197
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
EDS D N V T SG +VE+QG+AE++ FS F M+ LAK L ++Q +
Sbjct: 198 EDSNAQADINLVFTGSGKLVEIQGTAEKSPFSYGQFEQMMELAKTGCQALKEIQAASL 255
>gi|325203845|gb|ADY99298.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
M01-240355]
Length = 706
Score = 156 bits (393), Expect = 3e-36, Method: Composition-based stats.
Identities = 46/242 (19%), Positives = 93/242 (38%), Gaps = 18/242 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +R +++ V GS L G+T L ATL +E++ +
Sbjct: 316 RIDGRDTRTVRPLNIQTSVLPRTHGSALFTRGETQALAVATLGTSRDEQIIDALSGEYTD 375
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P STG + A R+ G + RAL +V+ S + + +
Sbjct: 376 RFMLHYNFPPYSTGEVGRMGAPKRREIGHGRL----AKRALLAVLPKPEDFSYTMRVVSE 431
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ G ++L ++ + +L+G+ A+ +
Sbjct: 432 ITESNGSSSMASVCGGCLSLLSAGVPLKAHVAGIAMGLILEGNKFAVLTD---------I 482
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T G + +Q + +++ L AK+ ++ K
Sbjct: 483 LGDEDHLGDMDFKVAGTTEG-VTALQMDIKIQGITKEIMQIALAQAKEARLHILDQMKAA 541
Query: 238 IS 239
++
Sbjct: 542 VA 543
Score = 89.1 bits (219), Expect = 4e-16, Method: Composition-based stats.
Identities = 37/228 (16%), Positives = 75/228 (32%), Gaps = 27/228 (11%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGMLPR 68
++L +++ A + V GDT +L T ++E + + T G +P
Sbjct: 16 VTLETGEIARQAAAAVKVSMGDTVVLVAVTTNKEVKEGQDFFPLTVDYLERTYAAGKIPG 75
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
R G+Q + R+I R +R + QI+ + + +
Sbjct: 76 GFFKR------EGKQSEKEILTSRLIDRPIRPLFPEGFYHDIQIVAMVVSVDPEIDSDIP 129
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+ GA A G + A G + G +++ E + +D
Sbjct: 130 AMLGASAA-------------LVLSGVPFAGPIGAARVGYVNGVYVLNPTKAELAKSQLD 176
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
T ++ V+ A+ +D + D++ I +
Sbjct: 177 LVVAGTSK-AVLMVESEAKI--LPEDVMLGAVVYGHDQMQVAINAINE 221
>gi|325144204|gb|EGC66511.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
M01-240013]
gi|325206400|gb|ADZ01853.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
M04-240196]
Length = 706
Score = 156 bits (393), Expect = 3e-36, Method: Composition-based stats.
Identities = 46/242 (19%), Positives = 93/242 (38%), Gaps = 18/242 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +R +++ V GS L G+T L ATL +E++ +
Sbjct: 316 RIDGRDTRTVRPLNIQTSVLPRTHGSALFTRGETQALAVATLGTSRDEQIIDALSGEYTD 375
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P STG + A R+ G + RAL +V+ S + + +
Sbjct: 376 RFMLHYNFPPYSTGEVGRMGAPKRREIGHGRL----AKRALLAVLPKPEDFSYTMRVVSE 431
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ G ++L ++ + +L+G+ A+ +
Sbjct: 432 ITESNGSSSMASVCGGCLSLLSAGVPLKAHVAGIAMGLILEGNKFAVLTD---------I 482
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T G + +Q + +++ L AK+ ++ K
Sbjct: 483 LGDEDHLGDMDFKVAGTTEG-VTALQMDIKIQGITKEIMQIALAQAKEARLHILDQMKAA 541
Query: 238 IS 239
++
Sbjct: 542 VA 543
Score = 89.1 bits (219), Expect = 4e-16, Method: Composition-based stats.
Identities = 37/228 (16%), Positives = 75/228 (32%), Gaps = 27/228 (11%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGMLPR 68
++L +++ A + V GDT +L T ++E + + T G +P
Sbjct: 16 VTLETGEIARQAAAAVKVSMGDTVVLVAVTTNKEVKEGQDFFPLTVDYLERTYAAGKIPG 75
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
R G+Q + R+I R +R + QI+ + + +
Sbjct: 76 GFFKR------EGKQSEKEILTSRLIDRPIRPLFPEGFYHDIQIVAMVVSVDPEIDSDIP 129
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+ GA A G + A G + G +++ E + +D
Sbjct: 130 AMLGASAA-------------LVLSGVPFAGPIGAARVGYVNGVYVLNPTKAELAKSQLD 176
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
T ++ V+ A+ +D + D++ I +
Sbjct: 177 LVVAGTSK-AVLMVESEAKI--LPEDVMLGAVVYGHDQMQVAINAINE 221
>gi|237747627|ref|ZP_04578107.1| polyribonucleotide nucleotidyltransferase [Oxalobacter formigenes
OXCC13]
gi|229378989|gb|EEO29080.1| polyribonucleotide nucleotidyltransferase [Oxalobacter formigenes
OXCC13]
Length = 713
Score = 156 bits (393), Expect = 3e-36, Method: Composition-based stats.
Identities = 44/240 (18%), Positives = 92/240 (38%), Gaps = 18/240 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +R I++ V GS L G+T L ATL + + +
Sbjct: 320 RIDGRDTRTVRPITIRTGVLPRTHGSALFTRGETQALVVATLGTSRDNQKIDALMGEYSD 379
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y M P +TG + R+ G + RAL + + S I + +
Sbjct: 380 AFMMHYNMPPFATGETGRVGTPKRREIGHGRL----AKRALIACLPSQEEFSYSIRLVSE 435
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+++++G + A++ G +AL D +++ + + +G+ A+ +
Sbjct: 436 IMESNGSSSMASVCGGSLALMDAGVPVKNHVAGIAMGLIKEGNKFAVLTD---------I 486
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T +G + +Q + +++ L A++ ++ ++
Sbjct: 487 LGDEDHLGDMDFKVAGTANG-VNALQMDIKIQGITKEIMQVALAQAREGRMHILSKMQEA 545
Score = 105 bits (262), Expect = 5e-21, Method: Composition-based stats.
Identities = 35/232 (15%), Positives = 79/232 (34%), Gaps = 27/232 (11%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT----KHGWITAEYGMLPR 68
+++ +++ A G+ +V DT +L T ++ V + + G +P
Sbjct: 16 VTMETGEIARQASGAVMVSVDDTVVLATVVAKDDVKPGQDFFPLTVDYIEKSYAAGRIPG 75
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
S R GR + R+I R +R + Q+II + +
Sbjct: 76 SFFKR------EGRPSEKETLTSRLIDRPIRPLFPEGYFNEVQVIIHVLSVNPEVDPDIP 129
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
++ A AL G + A G + G +++ + +D
Sbjct: 130 SMIAASAALC-------------VSGIPFNGPLGAARVGYIDGQYVLNPTASQLPLSKMD 176
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
T+ ++ V+ AE +D + +++ +I +++ +
Sbjct: 177 LVVAGTEQ-AVLMVESEAEE--LPEDIMLGAVVFGHEQMKVVIDAIDELVRD 225
>gi|121634554|ref|YP_974799.1| polynucleotide phosphorylase/polyadenylase [Neisseria meningitidis
FAM18]
gi|120866260|emb|CAM10001.1| putative polyribonucleotide nucleotidyltransferase [Neisseria
meningitidis FAM18]
Length = 711
Score = 156 bits (393), Expect = 3e-36, Method: Composition-based stats.
Identities = 46/242 (19%), Positives = 93/242 (38%), Gaps = 18/242 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +R +++ V GS L G+T L ATL +E++ +
Sbjct: 321 RIDGRDTRTVRPLNIQTSVLPRTHGSALFTRGETQALAVATLGTSRDEQIIDALSGEYTD 380
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P STG + A R+ G + RAL +V+ S + + +
Sbjct: 381 RFMLHYNFPPYSTGEVGRMGAPKRREIGHGRL----AKRALLAVLPKPEDFSYTMRVVSE 436
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ G ++L ++ + +L+G+ A+ +
Sbjct: 437 ITESNGSSSMASVCGGCLSLLSAGVPLKAHVAGIAMGLILEGNKFAVLTD---------I 487
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T G + +Q + +++ L AK+ ++ K
Sbjct: 488 LGDEDHLGDMDFKVAGTTEG-VTALQMDIKIQGITKEIMQIALAQAKEARLHILDQMKAA 546
Query: 238 IS 239
++
Sbjct: 547 VA 548
Score = 89.1 bits (219), Expect = 4e-16, Method: Composition-based stats.
Identities = 37/228 (16%), Positives = 75/228 (32%), Gaps = 27/228 (11%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGMLPR 68
++L +++ A + V GDT +L T ++E + + T G +P
Sbjct: 21 VTLETGEIARQAAAAVKVSMGDTVVLVAVTTNKEVKEGQDFFPLTVDYLERTYAAGKIPG 80
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
R G+Q + R+I R +R + QI+ + + +
Sbjct: 81 GFFKR------EGKQSEKEILTSRLIDRPIRPLFPEGFYHDIQIVAMVVSVDPEIDSDIP 134
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+ GA A G + A G + G +++ E + +D
Sbjct: 135 AMLGASAA-------------LVLSGVPFAGPIGAARVGYVNGVYVLNPTKAELAKSQLD 181
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
T ++ V+ A+ +D + D++ I +
Sbjct: 182 LVVAGTSK-AVLMVESEAKI--LPEDVMLGAVVYGHDQMQVAINAINE 226
>gi|310817255|ref|YP_003965219.1| polyribonucleotide nucleotidyltransferase [Ketogulonicigenium
vulgare Y25]
gi|308755990|gb|ADO43919.1| polyribonucleotide nucleotidyltransferase [Ketogulonicigenium
vulgare Y25]
Length = 713
Score = 156 bits (393), Expect = 3e-36, Method: Composition-based stats.
Identities = 44/241 (18%), Positives = 91/241 (37%), Gaps = 17/241 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +++R I + A GS L G+T L TL +E+ +
Sbjct: 318 RIDGRSLDEVRPIVSETGLLPRAHGSALFTRGETQGLVVTTLGTGDDEQFIDALHGNFKS 377
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + + R+ G + RAL++V+ + I + +
Sbjct: 378 NFLLHYNFPPYSVGEVGRVGSPGRREIGHGKL----AWRALQAVLPANTDFPYTIRVVSE 433
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ G +++ D ++ + VL+ + + D+
Sbjct: 434 ITESNGSSSMASVCGGSLSMLDAGVPLKAPVAGVAMGLVLEKDGS--------WAVLTDI 485
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T++G I +Q + A + + L A+ ++
Sbjct: 486 LGDEDHLGDMDFKVAGTEAG-ITSLQMDIKVAGITPEIMRKALAQARTGRLHILGEMAKS 544
Query: 238 I 238
+
Sbjct: 545 L 545
Score = 101 bits (250), Expect = 1e-19, Method: Composition-based stats.
Identities = 34/232 (14%), Positives = 65/232 (28%), Gaps = 33/232 (14%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT----KHGWITAEYGMLPR 68
++L +++ A+GS + G+T ++ T + + G +P
Sbjct: 16 LTLETGKIARQADGSVIATLGETSVMANVTFAKAPKPGQDFFPLTVHYQEKYYAAGKIPG 75
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
R R R I R+I R R + ++
Sbjct: 76 GFFKR------EARPTERETLISRLIDRPCRPLFVEGFKHEVLVMATVLSHDLVNDPDIV 129
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDST---- 184
A+ A A G + A G G ++ E
Sbjct: 130 AMIAASAA-------------LTISGVPFMGPIGAARVGYSNGAYTLNPAIDELHDIRNK 176
Query: 185 --IDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
+D T ++ V+ A S+D + A +++ +I L
Sbjct: 177 SEQRLDLVVAGTKD-AVMMVESEAYE--LSEDEILGAVVFAHEQMQPVIDLI 225
>gi|325127858|gb|EGC50764.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
N1568]
Length = 706
Score = 156 bits (393), Expect = 3e-36, Method: Composition-based stats.
Identities = 46/242 (19%), Positives = 93/242 (38%), Gaps = 18/242 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +R +++ V GS L G+T L ATL +E++ +
Sbjct: 316 RIDGRDTRTVRPLNIQTSVLPRTHGSALFTRGETQALAVATLGTSRDEQIIDALSGEYTD 375
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P STG + A R+ G + RAL +V+ S + + +
Sbjct: 376 RFMLHYNFPPYSTGEVGRMGAPKRREIGHGRL----AKRALLAVLPKPEDFSYTMRVVSE 431
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ G ++L ++ + +L+G+ A+ +
Sbjct: 432 ITESNGSSSMASVCGGCLSLLSAGVPLKAHVAGIAMGLILEGNKFAVLTD---------I 482
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T G + +Q + +++ L AK+ ++ K
Sbjct: 483 LGDEDHLGDMDFKVAGTTEG-VTALQMDIKIQGITKEIMQIALAQAKEARLHILDQMKAA 541
Query: 238 IS 239
++
Sbjct: 542 VA 543
Score = 89.5 bits (220), Expect = 4e-16, Method: Composition-based stats.
Identities = 37/228 (16%), Positives = 75/228 (32%), Gaps = 27/228 (11%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGMLPR 68
++L +++ A + V GDT +L T ++E + + T G +P
Sbjct: 16 VTLETGEIARQAAAAVKVSMGDTVVLVAVTTNKEVKEGQDFFPLTVDYLERTYAAGKIPG 75
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
R G+Q + R+I R +R + QI+ + + +
Sbjct: 76 GFFKR------EGKQSEKEILTSRLIDRPIRPLFPEGFYHDIQIVAMVVSVDPEIDSDIP 129
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+ GA A G + A G + G +++ E + +D
Sbjct: 130 AMLGASAA-------------LVLSGVPFAGPIGAARVGYINGVYVLNPTKAELAKSQLD 176
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
T ++ V+ A+ +D + D++ I +
Sbjct: 177 LVVAGTSK-AVLMVESEAKI--LPEDVMLGAVVYGHDQMQVAINAINE 221
>gi|292492790|ref|YP_003528229.1| polyribonucleotide nucleotidyltransferase [Nitrosococcus halophilus
Nc4]
gi|291581385|gb|ADE15842.1| Polyribonucleotide nucleotidyltransferase [Nitrosococcus halophilus
Nc4]
Length = 711
Score = 156 bits (393), Expect = 3e-36, Method: Composition-based stats.
Identities = 45/242 (18%), Positives = 89/242 (36%), Gaps = 18/242 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +R I++ + A GS L G+T L TL + +V I +
Sbjct: 331 RIDGRDTKSVRPINIMTGLLPRAHGSALFTRGETQSLVATTLGTERDAQVIDAIEGERRE 390
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P G A R+ G + R+L +VV I + +
Sbjct: 391 RFMLHYNFPPYCVGETGFVGAPKRREIGHGRL----AKRSLNAVVPDEESFPYVIRVVSE 446
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A + G ++L D + + + + + A+ +
Sbjct: 447 ITESNGSSSMATVCGTSLSLMDAGVPITEPVAGIAMGLIKERDQFAVLSD---------I 497
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T G + +Q + +++ L+ A++ +++ +V
Sbjct: 498 LGDEDHLGDMDFKVAGTGKG-VTALQMDIKIDGITEEIMRTALSQAREGRLHILQKMNEV 556
Query: 238 IS 239
IS
Sbjct: 557 IS 558
Score = 101 bits (252), Expect = 6e-20, Method: Composition-based stats.
Identities = 38/243 (15%), Positives = 80/243 (32%), Gaps = 30/243 (12%)
Query: 6 RQENQM--REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKHGW 58
R+ + R + L +++ A G+ +V +G+T +L TA E + +
Sbjct: 21 RKVIEYGDRSLVLETGCIARQATGAVVVHYGETAVLVTAVGVKEAIEGRDFFPLTVNYQE 80
Query: 59 ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDV 118
T G +P R GR + R+I R LR + Q+I
Sbjct: 81 RTYAAGKIPGGFFKR------EGRPTEKETLTSRLIDRPLRPLFPKGFTNEVQVIATVIS 134
Query: 119 IQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLD 178
+ ++ GA A +AA G + G +++
Sbjct: 135 SDGENDPDIPSLIGASAA-------------LALSGIPFTTPIAAARVGYIDGRYVLNPT 181
Query: 179 YGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
+ +D T+ ++ V+ A ++ + + +I+ ++ +
Sbjct: 182 LSQMEKSALDLVVAGTEK-AVLMVESEARE--LPEEIMLGSVIFGHQEMQAVIQAIRE-L 237
Query: 239 SNE 241
+ E
Sbjct: 238 AEE 240
>gi|73540660|ref|YP_295180.1| polynucleotide phosphorylase/polyadenylase [Ralstonia eutropha
JMP134]
gi|123625489|sp|Q473U7|PNP_RALEJ RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|72118073|gb|AAZ60336.1| 3' exoribonuclease:RNA binding S1:KH, type 1 [Ralstonia eutropha
JMP134]
Length = 728
Score = 156 bits (393), Expect = 3e-36, Method: Composition-based stats.
Identities = 50/242 (20%), Positives = 95/242 (39%), Gaps = 18/242 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +R I + V A GS L G+T L ATL +E++ +
Sbjct: 317 RIDGRDTRTVRPIEIRSSVLPRAHGSALFTRGETQALVVATLGTKSDEQIIDALAGEYRD 376
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y M P +TG + + R+ G + RAL V+ + I + +
Sbjct: 377 RFMLHYNMPPFATGETGRVGSPKRREIGHGRL----AKRALIPVLPKDDEFAYTIRLVSE 432
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ G +AL D ++ + +L+G+ A+ +
Sbjct: 433 ITESNGSSSMASVCGGCLALMDAGVPVKAHVAGVAMGLILEGNKFAVLTD---------I 483
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D TD+G I +Q + +++ L AK+ ++ +
Sbjct: 484 LGDEDHLGDMDFKVAGTDNG-ITALQMDIKVQGITKEIMQVALAQAKEGRLHILGAMQGA 542
Query: 238 IS 239
+
Sbjct: 543 MG 544
Score = 88.0 bits (216), Expect = 1e-15, Method: Composition-based stats.
Identities = 38/232 (16%), Positives = 74/232 (31%), Gaps = 31/232 (13%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT----KHGWITAEYGMLPR 68
+ + +++ A G+ +V DT +L T + + T G +P
Sbjct: 18 VRMETGEIARQAGGAVIVDVEDTVVLATVVAAKSPKPGQDFFPLTVDYIEKTYAAGKIPG 77
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
R GR R+I R LR + Q+++ + +
Sbjct: 78 GFFKR------EGRPSENETLTSRLIDRPLRPLFPEGFYNDVQVVVHVVSLNPEIPADIP 131
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+ GA A G V A G G +++ + +T D+D
Sbjct: 132 ALIGASAA-------------LAVSGIPFNGPVGAARIGYKDGQYLLNPTRSQMATSDLD 178
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKD----RIADLIKLQKD 236
T+ ++ V+ A + S+D + + I + L ++
Sbjct: 179 LVVAGTER-AVLMVESEANQ--LSEDVMLGAVVYGHEQMQIAINAIHDLVRE 227
>gi|222529049|ref|YP_002572931.1| polynucleotide phosphorylase/polyadenylase [Caldicellulosiruptor
bescii DSM 6725]
gi|257096680|sp|B9MR54|PNP_ANATD RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|222455896|gb|ACM60158.1| Polyribonucleotide nucleotidyltransferase [Caldicellulosiruptor
bescii DSM 6725]
Length = 701
Score = 156 bits (393), Expect = 3e-36, Method: Composition-based stats.
Identities = 50/241 (20%), Positives = 89/241 (36%), Gaps = 17/241 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHG 57
R GR+ +++R + + GS L K G T +LT AT E + + +
Sbjct: 313 RPDGRKFDEIRPLYAEIGILPRTHGSALFKRGYTQVLTVATLGTKGEMQFLDGLEEEEAK 372
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P STG R+ G RAL V+ I + +
Sbjct: 373 RYMHHYNFPPFSTGESKPVRGPGRREIGHGAL----AERALEPVIPSEDEFPYTIRLVSE 428
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
V+ ++G T A++ G+ +AL D ++ + + K + I + D+
Sbjct: 429 VLTSNGSTSQASVCGSTLALMDAGVPIKAPVAGISIGLITKDDGSFI--------LLTDI 480
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T G I +Q + +++ L A++ ++ + V
Sbjct: 481 QGIEDFFGDMDFKVAGTREG-ITAIQLDIKIHGLTKEIIEKALYQAREARLKILDFMQTV 539
Query: 238 I 238
I
Sbjct: 540 I 540
Score = 106 bits (263), Expect = 4e-21, Method: Composition-based stats.
Identities = 37/234 (15%), Positives = 79/234 (33%), Gaps = 27/234 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVP----MWIRNTKHGWITAEYGML 66
RE+S + A G+ L ++GDT +L TA EK + + G +
Sbjct: 13 RELSFEIGKYALLANGAVLARYGDTAVLVTACASEKPREGINFFPLTVDYEERLYSVGKI 72
Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
P R G+ ++ R+I R +R + +I + D
Sbjct: 73 PGGFIKR------EGKPSEKAILSARLIDRPIRPLFPKDFYHDVSVIATVLSVDPDNPPD 126
Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
A+ G+ VA +G ++ G + +++ E
Sbjct: 127 VLAMLGSSVA-------------LSISDIPFEGPTGSVLVGYVDDKIVINPTAKEREVSK 173
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
+ T ++ ++ A+ S+D + A++ I +++ + ++
Sbjct: 174 LHLVVSGTKD-RVMMIEAGAKE--VSEDIMLEAIMRAQEEIKKIVEFIEGIVRE 224
>gi|222100220|ref|YP_002534788.1| Polyribonucleotide nucleotidyltransferase [Thermotoga neapolitana
DSM 4359]
gi|254782743|sp|B9K8Y9|PNP_THENN RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|221572610|gb|ACM23422.1| Polyribonucleotide nucleotidyltransferase [Thermotoga neapolitana
DSM 4359]
Length = 707
Score = 156 bits (393), Expect = 3e-36, Method: Composition-based stats.
Identities = 46/243 (18%), Positives = 86/243 (35%), Gaps = 18/243 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
+R GR+ N++R IS + GS L G+T L TL + ++ +
Sbjct: 316 IRADGRKPNEIRPISCEVGLFPRTHGSALFTRGETQSLGIVTLGAPMDVQIIDTLLEEGV 375
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P TG S R+ G RAL++++ I +
Sbjct: 376 KRFMLHYNFPPFCTGEVKPLRGPSRREIGHGHL----AERALKNMLPPEEEFPYTIRVVS 431
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
++++++G + A + +AL D + + +L+ + D
Sbjct: 432 EILESNGSSSMATVCSGSLALMDAGVPIRKHVAGIAMGLILEEDA---------EVILTD 482
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T G I Q + + S + L A++ ++ +
Sbjct: 483 IIGMEDHYGDMDFKVAGTRDG-ITAFQMDCKVSGVSDELLMKALMQAREARMYILDKMYE 541
Query: 237 VIS 239
IS
Sbjct: 542 TIS 544
Score = 107 bits (266), Expect = 2e-21, Method: Composition-based stats.
Identities = 49/234 (20%), Positives = 83/234 (35%), Gaps = 27/234 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----HGWITAEYGML 66
RE+ + V+K + G+ LV+FGDT +L TA + +KV I G +
Sbjct: 11 RELVVQHGKVAKQSSGAVLVRFGDTAVLATANISDKVIEGIDFVPLTVEFQERFYAAGKI 70
Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
P R G+ + R+I R +R + Q+I+ +
Sbjct: 71 PGGFIKR------EGKPSESAILSARLIDRPIRPLFPKKLRNEIQVIVTVLSADPNVPPD 124
Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
I +AL+ +G VA I G G I +
Sbjct: 125 VVGIFAVSLALN-------------VSKIPFEGIVAGIRIGYRDGQFIAFPTEEDIEKGL 171
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
+D T + V+G A+ S++ L A I +L+ Q++++S
Sbjct: 172 MDITVAGTKD-AVTMVEGEAKE--VSEEDMVKALRFAHSVIKELVDFQEEILSE 222
>gi|144899450|emb|CAM76314.1| Polyribonucleotide nucleotidyltransferase (polynucleotide
phosphorylase) [Magnetospirillum gryphiswaldense MSR-1]
Length = 721
Score = 156 bits (393), Expect = 3e-36, Method: Composition-based stats.
Identities = 45/242 (18%), Positives = 86/242 (35%), Gaps = 18/242 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
+R+ GR +R I V A GS L G+T L ATL +E++ +
Sbjct: 315 IRIDGRDTKTVRAIESQVGVLPRAHGSALFTRGETQALVVATLGTGQDEQIIDALDGEYR 374
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P S G + + R+ G + RA+R + I +
Sbjct: 375 ENFMLHYNFPPYSVGEAGRMGSPGRREIGHGKL----AWRAVRPCLPTKESFPYTIRVVS 430
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
++ +++G + A + G+ +A+ D M + + + A+
Sbjct: 431 EITESNGSSSMATVCGSSLAMMDAGVPMPRPVAGIAMGLIKEDSGFAVLSD--------- 481
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T G + +Q + + +++ L AKD ++
Sbjct: 482 ILGDEDHLGDMDFKVAGTAEG-VTALQMDIKITSITEEIMKIALGQAKDGRLHILGEMSK 540
Query: 237 VI 238
+
Sbjct: 541 GL 542
Score = 106 bits (265), Expect = 2e-21, Method: Composition-based stats.
Identities = 38/228 (16%), Positives = 74/228 (32%), Gaps = 27/228 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----HGWITAEYGML 66
R++ L +++ A+G+ L +GDT +L T + I + G +
Sbjct: 16 RKLVLEAGKIARQADGAVLATYGDTTVLCTVVGAKAPKPGIDFFPLTVNYQEKAFAAGKI 75
Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
P R GR + + R+I R +R + Q++ +
Sbjct: 76 PGGFFKR------EGRPSEKETLVSRLIDRPIRPLFVDGYRNETQVVCTVLSHDLENDPD 129
Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
A+ GA A G +AA G + G +++ +
Sbjct: 130 IVAMVGASAA-------------LTISGLPFMGPIAAARVGYINGEYVLNPTTAQVKESA 176
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
+D T G ++ V+ A+ S+D + +I+
Sbjct: 177 LDLVVAGTVEG-VLMVESEAKE--LSEDIMLGAVMHGHREFQAVIQAI 221
>gi|110597075|ref|ZP_01385364.1| Polyribonucleotide nucleotidyltransferase [Chlorobium ferrooxidans
DSM 13031]
gi|110341266|gb|EAT59731.1| Polyribonucleotide nucleotidyltransferase [Chlorobium ferrooxidans
DSM 13031]
Length = 731
Score = 156 bits (393), Expect = 3e-36, Method: Composition-based stats.
Identities = 49/243 (20%), Positives = 85/243 (34%), Gaps = 18/243 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
RL GR ++R IS+ + A GS L G+T L T TL + + + N+
Sbjct: 332 RLDGRTLEEVRPISIELGIIPRAHGSALFTRGETQALVTITLGTKKDAQSVDNLTNSADK 391
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + + R+ G RA++ V I I D
Sbjct: 392 KFMLHYNFPPFSVGETGRIGSTGRREIGHGNL----AERAIKMVAPTEQEFPYTIRIVSD 447
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+++++G + A++ G +AL D + + + + +G A+ +
Sbjct: 448 ILESNGSSSMASVCGGTLALMDGGVPIRKPVSGIAMGLIKEGSAYAVLSD---------I 498
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T G I Q + L A+ ++ +
Sbjct: 499 LGNEDHLGDMDFKVTGTRDG-ITACQMDIKIDGLDYHVLETALEQARKGRLHILDKMDEA 557
Query: 238 ISN 240
I
Sbjct: 558 IPE 560
Score = 108 bits (268), Expect = 1e-21, Method: Composition-based stats.
Identities = 45/230 (19%), Positives = 79/230 (34%), Gaps = 28/230 (12%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT-----KHGWITAEYGMLP 67
+S+ ++K A+G+ +V+ GDT +L T +K P ++ ++ + G P
Sbjct: 15 LSIETGKMAKQADGATVVRLGDTMVLATVVSSKKTPPPNQDYFPLQVEYREKYSAAGKFP 74
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R R + R+I RALR + L QIII
Sbjct: 75 GGFFKR------ETRPSEKEVLSARLIDRALRPLFPDGYLYETQIIITVISSDQINDGDV 128
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
A A+ + ++ + G + G I++ D E + D+
Sbjct: 129 LGGIAASAAIM-------------VSDIPFRNAMSEVRVGRINGKFIINPDVNELAESDL 175
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
D T I ++ E S+ + D I L LQ ++
Sbjct: 176 DICIGGTKD-TICMLE--GEMQEISEAEMLDAIKFGHDAIKRLCTLQDEI 222
>gi|282848815|ref|ZP_06258208.1| polyribonucleotide nucleotidyltransferase [Veillonella parvula ATCC
17745]
gi|282581469|gb|EFB86859.1| polyribonucleotide nucleotidyltransferase [Veillonella parvula ATCC
17745]
Length = 689
Score = 156 bits (393), Expect = 3e-36, Method: Composition-based stats.
Identities = 46/244 (18%), Positives = 88/244 (36%), Gaps = 18/244 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
+R GRQ +++R IS V GS L G T +L T+ E++ +
Sbjct: 309 IRPDGRQLDEVRPISCRTGVLPRTHGSGLFTRGQTQVLNVTTVAPLSEKQTIDGLGVETE 368
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y S G R+ G RAL V+ + +
Sbjct: 369 KRYIHHYNFPSFSVGETRSSRGPGRREIGHGAL----AERALVPVIPSEEDFPYALRLVS 424
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V++++G + A++ G+ ++L D ++ + V +G + D
Sbjct: 425 EVLESNGSSSMASVCGSTLSLMDAGVPIKAPVAGIAMGLVTQGE---------HYTILTD 475
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED+ D+D T G + +Q + + S++ L A ++ + D
Sbjct: 476 IQGMEDALGDMDFKVAGTAKG-VTAIQMDIKISGLSREILQEALEQAHKGRMHIMGIMLD 534
Query: 237 VISN 240
I+
Sbjct: 535 TIAE 538
Score = 113 bits (283), Expect = 2e-23, Method: Composition-based stats.
Identities = 42/229 (18%), Positives = 82/229 (35%), Gaps = 26/229 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEK---VPMWIRNTKHGWITAEYGMLP 67
R +++ ++K A G+ +V +GDT +L TAT ++ + + + G LP
Sbjct: 11 RTLTIETGELAKQAGGAVMVGYGDTRVLVTATGSKEAKDIDFFPLTVDYEEKMYAVGRLP 70
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R R + R+I R +R + + ++ + D
Sbjct: 71 GGFIKR------EARPPESAILNSRLIDRPIRPLFNKGVRNEVHVVATVMSVDQDCDPAI 124
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
+ GA A G +A + G + G +V+ + D+
Sbjct: 125 CGMIGASAA-------------LSISDVPWNGPIAGVRMGRINGEFVVNPTKAQLEETDL 171
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ T I+ V+G AE +D ++ A + I ++ Q+D
Sbjct: 172 NIVVAGTKD-AILMVEGGAEEVP--EDIILEVIMAAHEEIKKIVAFQED 217
>gi|297588437|ref|ZP_06947080.1| polyribonucleotide nucleotidyltransferase [Finegoldia magna ATCC
53516]
gi|297573810|gb|EFH92531.1| polyribonucleotide nucleotidyltransferase [Finegoldia magna ATCC
53516]
Length = 714
Score = 156 bits (393), Expect = 3e-36, Method: Composition-based stats.
Identities = 49/244 (20%), Positives = 92/244 (37%), Gaps = 18/244 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
+R R+ +Q+REI+ + GS L K G T +L+ TL + +V + +
Sbjct: 312 IRPDNRKLDQIREITCDVDILPRPHGSGLFKRGQTQVLSVTTLGTPSDAQVLDGLIEQED 371
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
+Y P S G+ + R+ G RAL V+ I +
Sbjct: 372 KRYMHQYNFPPYSVGDARPLRSPGRREIGHGAL----AERALLPVIPSEEEFPYTIRVVS 427
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V+ ++G + A++ G+ ++L D +++ + + K I
Sbjct: 428 EVLSSNGSSSQASVCGSTLSLLDAGVPIKEPVAGIAMGLIKKDDNVVILSD--------- 478
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T G I +Q + S++ L A+ ++ L +
Sbjct: 479 IQGLEDHLGDMDFKVAGTKDG-ITALQMDIKITGISEEILTEALERARVGRLHILSLMNE 537
Query: 237 VISN 240
IS
Sbjct: 538 CISE 541
Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats.
Identities = 44/234 (18%), Positives = 82/234 (35%), Gaps = 31/234 (13%)
Query: 13 EISLTRR-VSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKHGWITAEYGMLP 67
+I +T V++ A G+CL++ G+T LL TA E V + G +P
Sbjct: 13 KIEVTIGKVAEQANGACLIQSGETVLLVTAVGSKEPREGVDFFPLTCDFEEKLYSVGKIP 72
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R GR ++ R+I R LR + Q+I + D
Sbjct: 73 GGFIKR------EGRPSEKATLTARLIDRPLRPLFPEGYHNDVQVIATALSVDQDNTPDI 126
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
A+ G+ +A G +++ GM+ G I++ + D+
Sbjct: 127 LAMIGSSIA-------------LSISDIPFLGPTGSVAVGMIDGEFIINPTQEQRDKSDL 173
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK----LQKDV 237
+ T I+ V+ ++ + A + I + + +QK+
Sbjct: 174 ELTVAGTKD-AIMMVEAGCNN--ITEQQVLKAILRAHEEIKKICEFIESIQKEC 224
>gi|61216045|sp|Q83FT1|RNPH_TROWT RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|61216046|sp|Q83HF6|RNPH_TROW8 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
Length = 247
Score = 156 bits (393), Expect = 3e-36, Method: Composition-based stats.
Identities = 106/238 (44%), Positives = 150/238 (63%), Gaps = 2/238 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+R + R +++R + + R + YAEGS L+ FG+T +L AT + VP ++R + GWIT
Sbjct: 11 LRKNSRAHDEIRPVKIIRGWNIYAEGSALIAFGNTRVLCNATFQRGVPPFLRGQRSGWIT 70
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEY MLPRS R RE+V G+ GRS EI R+IGR++R+++D AL II+DCDV+Q
Sbjct: 71 AEYAMLPRSGTERSDRESVKGKISGRSHEISRLIGRSMRAILDRYALEENTIILDCDVLQ 130
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTAAITG+++AL+D L + K L V+A+S G++ +DLDY
Sbjct: 131 ADGGTRTAAITGSYIALYDALVW--AKNQKILSKHPLTDSVSAVSVGLVGDQIFLDLDYS 188
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
EDS D N V T SG +VE+QG+AE++ FS F M+ LAK L ++Q +
Sbjct: 189 EDSNAQADINLVFTGSGKLVEIQGTAEKSPFSYGQFEQMMELAKTGCQALKEIQAASL 246
>gi|91203627|emb|CAJ71280.1| stronly similar to polynucleotide phosphorylase (PNPase)
[Candidatus Kuenenia stuttgartiensis]
Length = 705
Score = 156 bits (393), Expect = 3e-36, Method: Composition-based stats.
Identities = 42/244 (17%), Positives = 82/244 (33%), Gaps = 18/244 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
+R R +R I+ + GS L G+T + TL +E+ + +
Sbjct: 315 LRPDSRGLKDIRPITCEVGILPRVHGSALFTRGETQAIVVVTLGTTSDEQKVDGLEDEYS 374
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
+Y P G R+ G RAL V+ +
Sbjct: 375 KKFMLDYNFPPFCVGETKPLRGPGRREIGHGAL----AERALAEVLPPPNKFPYTTRVVS 430
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
D+ +++G + A++ G +AL D ++ + V + + I
Sbjct: 431 DITESNGSSSMASVCGGTLALMDAGVPIKAPVAGIAMGLVKEENSVCILSD--------- 481
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T G + +Q + A ++ L A++ +++ +
Sbjct: 482 ILGTEDHLGDMDFKVAGTAQG-VTALQMDIKIAGITEKIMRDALAQAREGRLHILQELEK 540
Query: 237 VISN 240
VI
Sbjct: 541 VIEK 544
Score = 116 bits (290), Expect = 3e-24, Method: Composition-based stats.
Identities = 42/234 (17%), Positives = 84/234 (35%), Gaps = 27/234 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTT-ATLEEK---VPMWIRNTKHGWITAEYGML 66
R +S+ V++ A+G+ LV++G+T +L T + E+ V + T G
Sbjct: 13 RALSIETGRVARQADGAVLVQYGETIVLVTAVSASEEKGNVDFLPLTVDYREKTYAAGKF 72
Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
P R GR + R+I R +R + + Q++ +
Sbjct: 73 PGGFFKR------EGRPSQKEILTMRLIDRPIRPLFPDTYFREVQVMSIVLSADKENDPD 126
Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
A+ GA A S ++ G + I++ + E +
Sbjct: 127 ILAMVGASAA-------------LSISSIPFCKPTGSVRVGQIEEKFIINPTHAELAQSS 173
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
+D T+ ++ V+ SA+ ++ + I ++I LQ ++I
Sbjct: 174 MDIVISGTED-AVMMVEASAKE--IPEEQMVDAIMFGHAAIKEIITLQHELIEK 224
>gi|15676656|ref|NP_273800.1| polynucleotide phosphorylase/polyadenylase [Neisseria meningitidis
MC58]
gi|81784821|sp|Q9K062|PNP_NEIMB RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|7225988|gb|AAF41171.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
MC58]
Length = 707
Score = 156 bits (393), Expect = 3e-36, Method: Composition-based stats.
Identities = 46/242 (19%), Positives = 93/242 (38%), Gaps = 18/242 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +R +++ V GS L G+T L ATL +E++ +
Sbjct: 317 RIDGRDTRTVRPLNIQTSVLPRTHGSALFTRGETQALAVATLGTSRDEQIIDALSGEYTD 376
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P STG + A R+ G + RAL +V+ S + + +
Sbjct: 377 RFMLHYNFPPYSTGEVGRMGAPKRREIGHGRL----AKRALLAVLPKPEDFSYTMRVVSE 432
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ G ++L ++ + +L+G+ A+ +
Sbjct: 433 ITESNGSSSMASVCGGCLSLLSAGVPLKAHVAGIAMGLILEGNKFAVLTD---------I 483
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T G + +Q + +++ L AK+ ++ K
Sbjct: 484 LGDEDHLGDMDFKVAGTTEG-VTALQMDIKIQGITKEIMQIALAQAKEARLHILDQMKAA 542
Query: 238 IS 239
++
Sbjct: 543 VA 544
Score = 89.1 bits (219), Expect = 5e-16, Method: Composition-based stats.
Identities = 37/228 (16%), Positives = 75/228 (32%), Gaps = 27/228 (11%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGMLPR 68
++L +++ A + V GDT +L T ++E + + T G +P
Sbjct: 17 VTLETGEIARQAAAAVKVSMGDTVVLVAVTTNKEVKEGQDFFPLTVDYLERTYAAGKIPG 76
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
R G+Q + R+I R +R + QI+ + + +
Sbjct: 77 GFFKR------EGKQSEKEILTSRLIDRPIRPLFPEGFYHDIQIVAMVVSVDPEIDSDIP 130
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+ GA A G + A G + G +++ E + +D
Sbjct: 131 AMLGASAA-------------LVLSGVPFAGPIGAARVGYVNGVYVLNPTKAELAKSQLD 177
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
T ++ V+ A+ +D + D++ I +
Sbjct: 178 LVVAGTSK-AVLMVESEAKI--LPEDVMLGAVVYGHDQMQVAINAINE 222
>gi|189346136|ref|YP_001942665.1| polynucleotide phosphorylase/polyadenylase [Chlorobium limicola DSM
245]
gi|257096673|sp|B3EH06|PNP_CHLL2 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|189340283|gb|ACD89686.1| Polyribonucleotide nucleotidyltransferase [Chlorobium limicola DSM
245]
Length = 736
Score = 156 bits (393), Expect = 3e-36, Method: Composition-based stats.
Identities = 48/241 (19%), Positives = 86/241 (35%), Gaps = 18/241 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
RL GR ++R IS+ + A GS L G+T L T TL + + + N
Sbjct: 335 RLDGRTLEEVRPISIELGIIPRAHGSALFTRGETQALVTITLGTKKDAQSVDNLTNNADK 394
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + + R+ G RA++ V + I D
Sbjct: 395 KFMLHYNFPPFSVGETGRIGSTGRREIGHGNL----AERAIKMVAPPEQEFPYTVRIVSD 450
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+++++G + A++ G +AL D + + + + +G A+ +
Sbjct: 451 ILESNGSSSMASVCGGTLALMDGGVPIRKPVSGIAMGLIKEGSNYAVLSD---------I 501
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T G I Q + + L A+ ++ ++
Sbjct: 502 LGNEDHLGDMDFKVSGTRDG-ITACQMDIKIDGLDYHILESALEQARRGRLHILDKMEEA 560
Query: 238 I 238
I
Sbjct: 561 I 561
Score = 115 bits (288), Expect = 5e-24, Method: Composition-based stats.
Identities = 47/229 (20%), Positives = 77/229 (33%), Gaps = 20/229 (8%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGN 72
IS+ ++K A+GS +V+ GDT +L T +K P N + + EY + G
Sbjct: 18 ISIETGKMAKQADGSVVVRLGDTMVLATVVSSKKTPPP--NQDYFPLQVEYREKYSAAGK 75
Query: 73 RVKREAVSG-RQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAIT 131
R + R+I RALR + L QII+
Sbjct: 76 FPGGFFKRESRPSEKEILSARLIDRALRPLFPDGYLFETQIIVTVISSDQINDADVLGGL 135
Query: 132 GAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANF 191
A A+ ++ + G + G I++ D E D+D
Sbjct: 136 AASAAIM-------------VSDIPFHNAMSEVRVGRINGKFIINPDVNELVNSDLDICI 182
Query: 192 VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
T I ++ E S+ + D I L LQ ++ +
Sbjct: 183 GGTTD-TICMLE--GEMKEISEAEMLDAIKFGHDAIRRLCALQNEIAAE 228
>gi|254673252|emb|CBA08277.1| ribonuclease PH [Neisseria meningitidis alpha275]
Length = 261
Score = 156 bits (393), Expect = 3e-36, Method: Composition-based stats.
Identities = 114/230 (49%), Positives = 161/230 (70%), Gaps = 3/230 (1%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+R S R + +R+I +T + +GSCL++ G+T ++ TA+++E VP ++R GW+T
Sbjct: 5 IRTS-RAADSLRDIKITPHFLPHTDGSCLIECGNTKVICTASIDENVPPFLRGKNQGWVT 63
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLP ST +R++REA +G+Q GR+QEIQR+IGR+LR+VVD+ LG RQI+IDCDVIQ
Sbjct: 64 AEYGMLPASTASRMRREASAGKQSGRTQEIQRLIGRSLRAVVDMEKLGERQILIDCDVIQ 123
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+ITGA+VAL + + ++ VAA+S G++ G P++DLDY
Sbjct: 124 ADGGTRTASITGAFVALQIAVGKLVSD--GILSENPIREAVAAVSVGVVNGVPLLDLDYP 181
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADL 230
EDS D D N VMT SG I+E+QG+AE A FS D ++ LA+ I +L
Sbjct: 182 EDSGCDSDVNIVMTASGKIIEIQGTAEDAPFSLDELGKLVALAQKGIGEL 231
>gi|308272445|emb|CBX29049.1| Polyribonucleotide nucleotidyltransferase [uncultured
Desulfobacterium sp.]
Length = 697
Score = 156 bits (393), Expect = 3e-36, Method: Composition-based stats.
Identities = 46/243 (18%), Positives = 85/243 (34%), Gaps = 18/243 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR+ +++R I+ + GS L G+T +L TL +E+ + +
Sbjct: 312 RIDGRKFDEIRPITCEVGLLPRPHGSALFTRGETQVLAVLTLGSGPDEQRVETLSGEELR 371
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + S R G R I R L I + +
Sbjct: 372 PFMLHYNFPPYSVGETKRLGGPSRRDIGHGGLSTRAIERILPP----KEEFDYTIRLVSE 427
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
V++++G + + +AL D ++ + + V +G I +
Sbjct: 428 VLESNGSSSMGTVCSGAMALMDGGVPIKSPVSGIAMGLVKEGDQVVILSD---------I 478
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED + D+D T G I +Q + + L A+ +++ +
Sbjct: 479 LGDEDHSGDMDFKVTGTRDG-ITALQMDIKIHELPRTILENALEQARTGRIFILEKMLEA 537
Query: 238 ISN 240
IS
Sbjct: 538 ISQ 540
Score = 99.5 bits (246), Expect = 3e-19, Method: Composition-based stats.
Identities = 42/225 (18%), Positives = 79/225 (35%), Gaps = 25/225 (11%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATL---EEKVPMWIRNTKHGWITAEYGMLPRS 69
+++ ++K A GS V++GDT +L TA E + ++ G +P +
Sbjct: 14 LTIQAGKLAKQASGSVTVQYGDTVVLVTAVSSYEERPGDFLPLSVEYQEKIYAAGRIPGN 73
Query: 70 TGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAA 129
R GR + R+I R +R + Q+I + + A
Sbjct: 74 YFRR-----EIGRPSEKETLTSRLIDRPIRPLFPKGYSCEIQVIATVLSMDHENDPDILA 128
Query: 130 ITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDA 189
+ GA A G VA++ G IV+ E D++
Sbjct: 129 MIGASAA-------------LEISDIPFAGPVASVRVIRKEGQLIVNPTIQECEGSDINI 175
Query: 190 NFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
+ +G +V V+G + S+ + + + +I +Q
Sbjct: 176 IIAGSKTG-VVMVEGGSNM--VSEKDMLEAIFYGHEAMQPIIDIQ 217
>gi|329847329|ref|ZP_08262357.1| polyribonucleotide nucleotidyltransferase [Asticcacaulis
biprosthecum C19]
gi|328842392|gb|EGF91961.1| polyribonucleotide nucleotidyltransferase [Asticcacaulis
biprosthecum C19]
Length = 749
Score = 156 bits (393), Expect = 3e-36, Method: Composition-based stats.
Identities = 46/242 (19%), Positives = 90/242 (37%), Gaps = 17/242 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +++R I V GS L G+T L ATL +E+ + T
Sbjct: 317 RVDGRPVDKVRAIVSEVGVLPRTHGSALFTRGETQALVVATLGTGDDEQYIDALDGTYKE 376
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + + R+ G + RA+R ++ + + +
Sbjct: 377 KFLLHYNFPPYSVGETGRMGSPGRREIGHGKL----AWRAVRPMLPTVEEFPYTVRVVSE 432
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A + G +AL D ++ + + +L+ + D+
Sbjct: 433 ITESNGSSSMATVCGTSLALMDAGVPLKSPVSGIAMGLILEPS--------GEYAILSDI 484
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T +G I +Q + +++ L A + +++
Sbjct: 485 LGDEDHLGDMDFKVAGTVNG-ITSLQMDIKVPGITEEIMTKALRQANEGRLHILEEMNKA 543
Query: 238 IS 239
IS
Sbjct: 544 IS 545
Score = 111 bits (276), Expect = 1e-22, Method: Composition-based stats.
Identities = 35/235 (14%), Positives = 76/235 (32%), Gaps = 28/235 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----HGWITAEYGML 66
R+++L +++ A+ + L +G+T +L T + T G +
Sbjct: 14 RKLTLETGRIARQADAAVLATYGETTVLATVVYARAPKPGQDFFPLTVNYQEKTFAAGKI 73
Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
P R GR + + R+I R +R + Q++ +
Sbjct: 74 PGGYFKR------EGRPSEKETLVSRLIDRPIRPLFVKGFKNEVQVVCTVLSHDMENDPD 127
Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
A+ A A G + G++ G +++ +
Sbjct: 128 IVAMVAASAA-------------LTLSGVPFMGPIGGARVGIIDGEFVLNPTGDQVKEST 174
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
+D T ++ V+ A+ S+D A L A + +I+ + ++
Sbjct: 175 LDLVVAGTTD-ALMMVESEAKE--LSEDKMLAALMFAHRGMQPVIEAIIE-MAEH 225
>gi|146337231|ref|YP_001202279.1| polynucleotide phosphorylase/polyadenylase [Bradyrhizobium sp.
ORS278]
gi|187470941|sp|A4YJF3|PNP_BRASO RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|146190037|emb|CAL74029.1| Polyribonucleotide nucleotidyltransferase (Polynucleotide
phosphorylase) (PNPase) [Bradyrhizobium sp. ORS278]
Length = 719
Score = 156 bits (393), Expect = 3e-36, Method: Composition-based stats.
Identities = 47/241 (19%), Positives = 87/241 (36%), Gaps = 18/241 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +R I V A GS L G+T L TL +E+ + T
Sbjct: 316 RIDGRDAKTVRNIVCEVGVLPRAHGSALFTRGETQALVVTTLGTGEDEQYIDALSGTYKE 375
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + R+ G + RA+ V+ + +
Sbjct: 376 TFLLHYNFPPYSVGETGRLGGTKRREIGHGKL----AWRAIHPVLPPHHEFPYTTRVVSE 431
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
V +++G + A + G+ +AL D ++ + + +L+G A+ +
Sbjct: 432 VTESNGSSSMATVCGSSLALMDAGVPLKRPTAGIAMGLILEGSRFAVLSD---------I 482
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T+SG I +Q + +++ L A++ ++
Sbjct: 483 LGDEDHLGDMDFKVAGTESG-ITSLQMDIKIEGITEEIMRVALGQAREGRIHILGEMSKA 541
Query: 238 I 238
+
Sbjct: 542 L 542
Score = 107 bits (267), Expect = 1e-21, Method: Composition-based stats.
Identities = 33/235 (14%), Positives = 74/235 (31%), Gaps = 28/235 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKHGWITAEYGML 66
R + L +++ A+G+ + +G+T +L T + V + G +
Sbjct: 14 RPLKLETGKIARQADGAVVATYGETVVLATVVAAKAPRDGVDFLPLTVDYQEKAYAAGRI 73
Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
P R GR + + R+I R +R + S Q+I+ +
Sbjct: 74 PGGYFKR------EGRPTEKETLVSRLIDRPIRPLFVDSWRNETQVIVTVLSHDMENDPD 127
Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
+ + + KG + A G I++ E +
Sbjct: 128 I-------------VALVAASAALTLSGVPFKGPIGAARVGFANDEYILNPTLDEMADTQ 174
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
+D T ++ V+ A+ ++D + +I + ++ +
Sbjct: 175 LDLVVAGTSD-AVLMVESEAKE--LNEDIMLGAVMFGHRHFQPVINAIIE-LAEK 225
>gi|307297863|ref|ZP_07577669.1| polyribonucleotide nucleotidyltransferase [Thermotogales bacterium
mesG1.Ag.4.2]
gi|306917123|gb|EFN47505.1| polyribonucleotide nucleotidyltransferase [Thermotogales bacterium
mesG1.Ag.4.2]
Length = 730
Score = 156 bits (393), Expect = 4e-36, Method: Composition-based stats.
Identities = 46/244 (18%), Positives = 88/244 (36%), Gaps = 18/244 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
+R+ GR+ N++R I++ + A GS L G+T L TL +E++ +
Sbjct: 322 VRMDGRKHNEIRPINIELDLLPRAHGSALFTRGETQSLGIVTLGATMDEQIVDTMFEEGS 381
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P STG + R+ G R+L+++V I +
Sbjct: 382 KSFMLHYNFPPFSTGEVKRLRGPGRREIGHGHL----AERSLKNIVPNGESFPYTIRVVS 437
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V++++G + A + ++L ME + + + +
Sbjct: 438 EVLESNGSSSMATVCSGSLSLMAAGVPMEKHVAGVAMGMIQEPEKTVVLTD--------- 488
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T G I Q + + S + L A+ ++ L +
Sbjct: 489 ILGNEDHMGDMDFKVTGTRDG-ITAFQMDVKVSGVSSEIMTKALEQARLARLKILDLMYE 547
Query: 237 VISN 240
I
Sbjct: 548 AIPE 551
Score = 99.1 bits (245), Expect = 4e-19, Method: Composition-based stats.
Identities = 43/233 (18%), Positives = 84/233 (36%), Gaps = 27/233 (11%)
Query: 13 EISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRN----TKHGWITAEYGMLP 67
++ + ++K A+G+ ++++ D+ LLTT E+ ++ G +P
Sbjct: 14 KLVIENGKMAKQADGAVVLRYADSVLLTTVNGNEQAVPGTDFLPLTVEYQEKFYAAGKIP 73
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R R + R+I R +R + Q+I+ D
Sbjct: 74 GGFLKR------ESRPSDNAVLSARIIDRPIRPLFPDGMRNEIQVIVTVLSADPDNPPDI 127
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
I + + L+ +G VA + G + G +V E ++
Sbjct: 128 WGIMASSLVLN-------------ISPIPFEGIVAGVQVGYVDGKYVVFPSADELERSEL 174
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
D T+ + V+G A+ S++ L A + I L+ QK++IS
Sbjct: 175 DIVVAGTED-AVAMVEGEAKE--VSEEVMVGALEAAHEAIKSLVAFQKEIISE 224
>gi|89900282|ref|YP_522753.1| polynucleotide phosphorylase/polyadenylase [Rhodoferax
ferrireducens T118]
gi|122479529|sp|Q21YD1|PNP_RHOFD RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|89345019|gb|ABD69222.1| 3' exoribonuclease [Rhodoferax ferrireducens T118]
Length = 706
Score = 155 bits (392), Expect = 4e-36, Method: Composition-based stats.
Identities = 43/243 (17%), Positives = 89/243 (36%), Gaps = 18/243 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +R I + V GS L G+T L TL + + +
Sbjct: 317 RIDGRDTRTVRPIEIRNSVLPRTHGSALFTRGETQALVVTTLGTERDAQRIDALSGDYED 376
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y M P +TG + R+ G + RAL +V+ + + +
Sbjct: 377 RFMLHYNMPPFATGETGRVGTPKRREIGHGRL----AKRALMAVLPSKEEFPYTMRVVSE 432
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ G ++L D M+ + + + + A+ +
Sbjct: 433 ITESNGSSSMASVCGGCLSLMDAGVPMKAHVAGIAMGLIKEENRFAVLTD---------I 483
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T +G I +Q + +++ L AK+ ++ ++
Sbjct: 484 LGDEDHLGDMDFKVAGTTNG-ITALQMDIKIQGITKEIMQVALAQAKEARMHILGKMQEA 542
Query: 238 ISN 240
++
Sbjct: 543 MAE 545
Score = 88.4 bits (217), Expect = 7e-16, Method: Composition-based stats.
Identities = 32/233 (13%), Positives = 74/233 (31%), Gaps = 31/233 (13%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGMLPR 68
+++ +++ A G+ L+ T +L T + + + T G +P
Sbjct: 18 VTMETGEIARQASGAVLLDMDGTVVLATVVAKTEGKAGQDFFPLTVDYLEKTYAAGKIPG 77
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
S R GR R+I R +R + +++ + + A
Sbjct: 78 SFFKR------EGRPSEFETLTSRLIDRPIRPLFPEGFFNEVHVVVHTLSLNPEVDADIA 131
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+ A G + A G + G +++ +D
Sbjct: 132 ALIAVSAA-------------LSVSGIPFSGPIGAARVGYINGEYVLNPGQTARKDSVMD 178
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKD----RIADLIKLQKDV 237
T++ ++ V+ A++ S++ + + I + +L +D
Sbjct: 179 LVVAGTEA-AVLMVESEAQQ--LSEEIMLGAVVFGHEQGNIAINAIHELVRDA 228
>gi|294791724|ref|ZP_06756872.1| polyribonucleotide nucleotidyltransferase [Veillonella sp. 6_1_27]
gi|294456954|gb|EFG25316.1| polyribonucleotide nucleotidyltransferase [Veillonella sp. 6_1_27]
Length = 689
Score = 155 bits (392), Expect = 4e-36, Method: Composition-based stats.
Identities = 46/244 (18%), Positives = 88/244 (36%), Gaps = 18/244 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
+R GRQ +++R IS V GS L G T +L T+ E++ +
Sbjct: 309 IRPDGRQLDEVRPISCRTGVLPRTHGSGLFTRGQTQVLNVTTVAPLSEKQTIDGLGVETE 368
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y S G R+ G RAL V+ + +
Sbjct: 369 KRYIHHYNFPSFSVGETRSSRGPGRREIGHGAL----AERALVPVIPSEEDFPYALRLVS 424
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V++++G + A++ G+ ++L D ++ + V +G + D
Sbjct: 425 EVLESNGSSSMASVCGSTLSLMDAGVPIKAPVAGIAMGLVTQGE---------HYTILTD 475
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED+ D+D T G + +Q + + S++ L A ++ + D
Sbjct: 476 IQGMEDALGDMDFKVAGTAKG-VTAIQMDIKISGLSREILQEALEQAHKGRMHIMGIMLD 534
Query: 237 VISN 240
I+
Sbjct: 535 TIAE 538
Score = 112 bits (279), Expect = 5e-23, Method: Composition-based stats.
Identities = 42/229 (18%), Positives = 82/229 (35%), Gaps = 26/229 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEK---VPMWIRNTKHGWITAEYGMLP 67
R +++ ++K A G+ +V +GDT +L TAT ++ + + + G LP
Sbjct: 11 RMLTIETGELAKQASGAVMVGYGDTRVLVTATGSKEAKDIDFFPLTVDYEEKMYAVGRLP 70
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R R + R+I R +R + + ++ + D
Sbjct: 71 GGFIKR------EARPPESAILNSRLIDRPIRPLFNKGVRNEVHVVATVMSVDQDCDPAI 124
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
+ GA A G +A + G + G +V+ + D+
Sbjct: 125 CGMIGASAA-------------LSISDVPWNGPIAGVRMGRINGEFVVNPTKSQLEETDL 171
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ T I+ V+G AE +D ++ A + I ++ Q+D
Sbjct: 172 NIVVAGTKD-AILMVEGGAEEVP--EDIILEVIMAAHEEIKKIVAFQED 217
>gi|148556711|ref|YP_001264293.1| polynucleotide phosphorylase/polyadenylase [Sphingomonas wittichii
RW1]
gi|187611293|sp|A5VCY9|PNP_SPHWW RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|148501901|gb|ABQ70155.1| Polyribonucleotide nucleotidyltransferase [Sphingomonas wittichii
RW1]
Length = 774
Score = 155 bits (392), Expect = 4e-36, Method: Composition-based stats.
Identities = 50/241 (20%), Positives = 92/241 (38%), Gaps = 18/241 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKHG 57
R+ GR +R I A GS L G+T ++T TL E++ + ++
Sbjct: 314 RIDGRDTRTVRPIVAEAHFLPRAHGSALFTRGETQSISTCTLGTKESEQMIDGLNGLRYE 373
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + A R+ G + RAL +V+ I + D
Sbjct: 374 HFMLHYNFPPYSVGEVGRFGAPGRREVGHGKL----AWRALHAVLPTKEEFPYTIRLTSD 429
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A + G +A+ D ++ + + +L+G A+ +
Sbjct: 430 ITESNGSSSMATVCGGSLAMMDAGVPIKRPVSGIAMGLILEGKDFAVISD---------I 480
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T G I +Q + A +++ F L AK+ A ++
Sbjct: 481 LGDEDHLGDMDFKVAGTSEG-ITTMQMDIKIAGITEEIFKTALLQAKEGRAHILGEMAKA 539
Query: 238 I 238
+
Sbjct: 540 L 540
Score = 106 bits (263), Expect = 4e-21, Method: Composition-based stats.
Identities = 35/233 (15%), Positives = 72/233 (30%), Gaps = 28/233 (12%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT----KHGWITAEYGMLPR 68
++L V++ A+G+ L G+T +L T V + G +P
Sbjct: 16 LTLETGRVARQADGAVLATLGETVVLCAVTAARSVKEGQDFFPLTVHYQEKYFSSGRIPG 75
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
R + + + R+I R +R + +I +
Sbjct: 76 GFFKRERGA------TEKETLVSRLIDRPIRPLFPEGFYNEINVIAQVLSYDGENEPDIL 129
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+ A A G + A G G +++ + + D+D
Sbjct: 130 AMIAASAA-------------LTISGVPFMGPIGAARVGYKDGEYLLNPTDADVAAGDLD 176
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
T ++ V+ A+ S++ + A D+IK ++ +
Sbjct: 177 LVVAATHD-AVMMVESEAKE--LSEEVMLGAVMFAHKASQDVIKAIIK-LAEK 225
>gi|294793588|ref|ZP_06758725.1| polyribonucleotide nucleotidyltransferase [Veillonella sp. 3_1_44]
gi|294455158|gb|EFG23530.1| polyribonucleotide nucleotidyltransferase [Veillonella sp. 3_1_44]
Length = 689
Score = 155 bits (392), Expect = 4e-36, Method: Composition-based stats.
Identities = 46/244 (18%), Positives = 88/244 (36%), Gaps = 18/244 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
+R GRQ +++R IS V GS L G T +L T+ E++ +
Sbjct: 309 IRPDGRQLDEVRPISCRTGVLPRTHGSGLFTRGQTQVLNVTTVAPLSEKQTIDGLGVETE 368
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y S G R+ G RAL V+ + +
Sbjct: 369 KRYIHHYNFPSFSVGETRSSRGPGRREIGHGAL----AERALVPVIPSEEDFPYALRLVS 424
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V++++G + A++ G+ ++L D ++ + V +G + D
Sbjct: 425 EVLESNGSSSMASVCGSTLSLMDAGVPIKAPVAGIAMGLVTQGE---------HYTILTD 475
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED+ D+D T G + +Q + + S++ L A ++ + D
Sbjct: 476 IQGMEDALGDMDFKVAGTAKG-VTAIQMDIKISGLSREILQEALEQAHKGRMHIMGIMLD 534
Query: 237 VISN 240
I+
Sbjct: 535 TIAE 538
Score = 111 bits (277), Expect = 1e-22, Method: Composition-based stats.
Identities = 42/229 (18%), Positives = 82/229 (35%), Gaps = 26/229 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEK---VPMWIRNTKHGWITAEYGMLP 67
R +++ ++K A G+ +V +GDT +L TAT ++ + + + G LP
Sbjct: 11 RMLTIETGELAKQAGGAVMVGYGDTRVLVTATGSKEAKDIDFFPLTVDYEEKMYAVGRLP 70
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R R + R+I R +R + + ++ + D
Sbjct: 71 GGFIKR------EARPPESAILNSRLIDRPIRPLFNKGVRNEVHVVATVMSVDQDCDPAI 124
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
+ GA A G +A + G + G +V+ + D+
Sbjct: 125 CGMIGASAA-------------LSISDVPWNGPIAGVRMGRINGEFVVNPTKSQLEETDL 171
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ T I+ V+G AE +D ++ A + I ++ Q+D
Sbjct: 172 NIVVAGTKD-AILMVEGGAEEVP--EDIILEVIMAAHEEIKKIVAFQED 217
>gi|119356388|ref|YP_911032.1| polynucleotide phosphorylase/polyadenylase [Chlorobium
phaeobacteroides DSM 266]
gi|187610253|sp|A1BDY1|PNP_CHLPD RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|119353737|gb|ABL64608.1| Polyribonucleotide nucleotidyltransferase [Chlorobium
phaeobacteroides DSM 266]
Length = 732
Score = 155 bits (392), Expect = 4e-36, Method: Composition-based stats.
Identities = 46/241 (19%), Positives = 86/241 (35%), Gaps = 18/241 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
RL GR +++R IS+ + A GS L G+T L T TL + + + ++
Sbjct: 332 RLDGRTLDEIRPISIELGIIPRAHGSALFTRGETQALVTITLGTKKDAQSVDTLTDSADK 391
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + R+ G R+++ V I I D
Sbjct: 392 RFMLHYNFPPFSVGETGRVGGTGRREIGHGNL----AERSIKMVSPSETDFPYTIRIVSD 447
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+++++G + A++ G +AL D + + + + +G ++ +
Sbjct: 448 ILESNGSSSMASVCGGTLALMDGGVPIRKPVSGIAMGLIKEGDAYSVLSD---------I 498
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T+ G I Q + L A+ ++ +
Sbjct: 499 LGNEDHLGDMDFKVAGTEDG-ITACQMDIKIDGLDYHILETALEQARKGRLHILDKMEVA 557
Query: 238 I 238
I
Sbjct: 558 I 558
Score = 113 bits (283), Expect = 2e-23, Method: Composition-based stats.
Identities = 43/233 (18%), Positives = 78/233 (33%), Gaps = 28/233 (12%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPM-----WIRNTKHGWITAEYGMLP 67
+S+ ++K A+G+ LV+ GDT +L T + P + ++ + G P
Sbjct: 15 LSIETGKMAKQADGAALVRLGDTMVLATVVSSKTPPPANQDYFPLQVEYREKYSAAGKFP 74
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R GR + R+I RALR + L QII+
Sbjct: 75 GGFFKR------EGRPSEKEILTARLIDRALRPLFPDGYLFETQIIVTVFSSDQINDADV 128
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
A A+ ++ + G + G IV+ + E D+
Sbjct: 129 LGGVAASAAIM-------------VSDIPFHNSMSEVRVGRINGEFIVNPNINELQGSDI 175
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
D T + I ++ E S+ + + I + LQ ++ +
Sbjct: 176 DICIGGTAN-TICMLE--GEMKEISEAEMLDAIKFGHEAIRKICALQDEMAAE 225
>gi|197121578|ref|YP_002133529.1| polynucleotide phosphorylase/polyadenylase [Anaeromyxobacter sp. K]
gi|226702594|sp|B4UHG5|PNP_ANASK RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|196171427|gb|ACG72400.1| Polyribonucleotide nucleotidyltransferase [Anaeromyxobacter sp. K]
Length = 721
Score = 155 bits (392), Expect = 4e-36, Method: Composition-based stats.
Identities = 46/242 (19%), Positives = 87/242 (35%), Gaps = 18/242 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +R+I+ + GS L G+T L TL +E+ +
Sbjct: 324 RIGGRGMADIRKITCEVGLLPRVHGSSLFTRGETQALVATTLGTAEDEQRVEMLTGMVFK 383
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + R+ G RALR+V+ + + D
Sbjct: 384 KFMLHYNFPPFSVGEVKFLRSPGRREIGHGAL----AERALRAVMPPEDQFPYTVRVVSD 439
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+++++G + A++ G ++L D ++ + + +G AI +
Sbjct: 440 IMESNGSSSMASVCGGCLSLMDAGVPIKAPVAGIAMGLIKEGEKIAILSD---------I 490
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T +G I +Q + ++D L A + ++
Sbjct: 491 LGDEDHLGDMDFKVCGTAAG-ITSIQMDIKIGGVTRDILEQALAQAAEGRKHILGEMAKA 549
Query: 238 IS 239
+S
Sbjct: 550 LS 551
Score = 98.4 bits (243), Expect = 9e-19, Method: Composition-based stats.
Identities = 47/229 (20%), Positives = 79/229 (34%), Gaps = 27/229 (11%)
Query: 13 EISLTRR-VSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKHGWITAEYGMLP 67
+I L V+K A GS V+ GD+ +L TA E + + + G +P
Sbjct: 14 DILLETGKVAKQAHGSVWVRLGDSIVLVTAVSAAEKKEGIDFFPLTVDYQEKLFAAGRVP 73
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
S R GR + R++ R+ R + Q+I + T
Sbjct: 74 GSFFRR------EGRPTEKETLTSRLVDRSCRPLFAEGYSNETQVIATVISFDQENDTDV 127
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
A+TGA ALH G +A + + G + + + + D+
Sbjct: 128 LALTGASAALH-------------ISDIPFGGPIAGVRVARVGGQLVANPTLAQRAEADL 174
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
D + IV V+G A+ S+ L + + L+ Q
Sbjct: 175 D-VVMAASRDAIVMVEGGAQE--VSEAVMIEALLFGQAAVQPLLDAQDA 220
>gi|238022211|ref|ZP_04602637.1| hypothetical protein GCWU000324_02118 [Kingella oralis ATCC 51147]
gi|237866825|gb|EEP67867.1| hypothetical protein GCWU000324_02118 [Kingella oralis ATCC 51147]
Length = 243
Score = 155 bits (392), Expect = 4e-36, Method: Composition-based stats.
Identities = 114/225 (50%), Positives = 159/225 (70%), Gaps = 2/225 (0%)
Query: 6 RQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGM 65
R +Q+R +++T +A+GS L+ G+T ++ TAT+++ VP ++R GW+TAEYGM
Sbjct: 8 RAAHQLRPVAITPNFLPHADGSVLMVCGNTKVICTATVDDNVPPFLRGKNQGWVTAEYGM 67
Query: 66 LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125
LP ST +R+KREA +G+Q GR+QEIQR+IGR+LR+ VDL+ LG RQI+IDCDVIQADGGT
Sbjct: 68 LPASTQSRMKREAAAGKQSGRTQEIQRLIGRSLRACVDLTLLGERQILIDCDVIQADGGT 127
Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185
RTA+ITGA+VAL +Q + D + VAA+S GM+ G P++DLDY EDS
Sbjct: 128 RTASITGAFVALQIAIQKLLDNGTLPANPLIGS--VAAVSAGMVNGVPLLDLDYPEDSGC 185
Query: 186 DVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADL 230
D D N VM ++ +I+E+QG+AE A FS A++ LA+ IA L
Sbjct: 186 DSDVNIVMLNAENIIEIQGTAEGAAFSVAELNALIALAQQGIAQL 230
>gi|210622620|ref|ZP_03293280.1| hypothetical protein CLOHIR_01228 [Clostridium hiranonis DSM 13275]
gi|210154121|gb|EEA85127.1| hypothetical protein CLOHIR_01228 [Clostridium hiranonis DSM 13275]
Length = 695
Score = 155 bits (392), Expect = 4e-36, Method: Composition-based stats.
Identities = 42/244 (17%), Positives = 83/244 (34%), Gaps = 18/244 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56
+R R+ N++R I + GS + G T ++ AT + + + ++
Sbjct: 316 VRPDNRKYNEIRPIWCETGMIPRTHGSAIFTRGQTQVMNIATLGALGDVQKLDGLDEEEN 375
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y S G R+ G RAL V+ I +
Sbjct: 376 KRYMHHYNFPAYSVGEARPSRGPGRREIGHGAL----AERALLPVIPSQEDFPYAIRLVS 431
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V+ ++G T A++ + ++L D ++D + + +
Sbjct: 432 EVLSSNGSTSQASVCASTLSLLDAGVPIKDMVAGIAMGLIKHHDKVVVLSD--------- 482
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T+ G I +Q + +D L A++ ++ +
Sbjct: 483 IQGMEDHLGDMDFKVAGTEHG-ITAIQMDIKIDGIDEDILRRALAQAREGRMHILGEMRK 541
Query: 237 VISN 240
VIS
Sbjct: 542 VISE 545
Score = 98.8 bits (244), Expect = 6e-19, Method: Composition-based stats.
Identities = 36/233 (15%), Positives = 87/233 (37%), Gaps = 27/233 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKHGWITAEYGML 66
RE+S+ + + G+C+VK+GD+ ++ T + + + + + G +
Sbjct: 14 RELSVEVGKICEMTNGNCIVKYGDSVVMVNTTKSAEPRDGIDFFPLSVDYEEKLYSVGKI 73
Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
P R G+ ++ R+I R +R + Q++ + D
Sbjct: 74 PGGFLKR------EGKPSEKAILTSRLIDRPIRPLFPKGFRNDVQVVATVLSVDQDCTPD 127
Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
A+ G+ VA G ++ G++ G +V+ + + +
Sbjct: 128 IVAMIGSSVA-------------LSISDIPFNGPTGSVCIGLVDGEFVVNPNAEQREKSE 174
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
+ T I+ V+ A+ S+D + A + I +++ +++++
Sbjct: 175 MHLVVSGTKD-AIMMVEAGAQE--VSEDTMLKAILFAHEHIKKIVEFIEEIVA 224
>gi|169824458|ref|YP_001692069.1| polyribonucleotide nucleotidyltransferase [Finegoldia magna ATCC
29328]
gi|226702653|sp|B0S1D9|PNP_FINM2 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|167831263|dbj|BAG08179.1| polyribonucleotide nucleotidyltransferase [Finegoldia magna ATCC
29328]
Length = 714
Score = 155 bits (392), Expect = 4e-36, Method: Composition-based stats.
Identities = 48/244 (19%), Positives = 92/244 (37%), Gaps = 18/244 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
+R R+ +Q+REI+ + GS L K G T +L+ TL + +V + +
Sbjct: 312 IRPDNRKLDQIREITCDVDILPRPHGSGLFKRGQTQVLSVTTLGTPSDAQVLDGLIEQED 371
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
+Y P S G+ + R+ G RAL V+ I +
Sbjct: 372 KRYMHQYNFPPYSVGDARPLRSPGRREIGHGAL----AERALLPVIPSEEEFPYTIRVVS 427
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V+ ++G + A++ G+ ++L D +++ + + + I
Sbjct: 428 EVLSSNGSSSQASVCGSTLSLLDAGVPIKEPVAGIAMGLIKEDDNVVILSD--------- 478
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T G I +Q + S++ L A+ ++ L +
Sbjct: 479 IQGLEDHLGDMDFKVAGTKDG-ITALQMDIKITGISEEILTEALERARVGRLHILSLMNE 537
Query: 237 VISN 240
IS
Sbjct: 538 CISE 541
Score = 100 bits (248), Expect = 2e-19, Method: Composition-based stats.
Identities = 44/234 (18%), Positives = 82/234 (35%), Gaps = 31/234 (13%)
Query: 13 EISLTRR-VSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKHGWITAEYGMLP 67
+I +T V++ A G+CL++ G+T LL TA E V + G +P
Sbjct: 13 KIEVTIGKVAEQANGACLIQSGETVLLVTAVGSKEPREGVDFFPLTCDFEEKLYSVGKIP 72
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R GR ++ R+I R LR + Q+I + D
Sbjct: 73 GGFIKR------EGRPSEKATLTARLIDRPLRPLFPEGYHNDVQVIATALSVDQDNTPDI 126
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
A+ G+ +A G +++ GM+ G I++ + D+
Sbjct: 127 LAMIGSSIA-------------LSISDIPFLGPTGSVAVGMIDGEFIINPTKEQREKSDL 173
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK----LQKDV 237
+ T I+ V+ ++ + A + I + + +QK+
Sbjct: 174 ELTVAGTKD-AIMMVEAGCNN--ITEQQVLKAILRAHEEIKKICEFIESIQKEC 224
>gi|219669688|ref|YP_002460123.1| polynucleotide phosphorylase/polyadenylase [Desulfitobacterium
hafniense DCB-2]
gi|254782717|sp|B8FR00|PNP_DESHD RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|219539948|gb|ACL21687.1| Polyribonucleotide nucleotidyltransferase [Desulfitobacterium
hafniense DCB-2]
Length = 723
Score = 155 bits (392), Expect = 4e-36, Method: Composition-based stats.
Identities = 47/244 (19%), Positives = 90/244 (36%), Gaps = 18/244 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56
+R GR +++R IS+ + G+ L G T +LT AT +E++ + +
Sbjct: 319 IRPDGRALDEIRPISVEVGILPRTHGTGLFTRGQTQVLTVATLGAVGDEQILDGLGLEES 378
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P S G R+ G RAL V+ I +
Sbjct: 379 KRYMHHYNFPPYSVGETRPMRGPGRREIGHGAL----AERALLPVIPNENDFPYTIRLVS 434
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V++++G + A++ G+ ++L D ++ + + + + AI
Sbjct: 435 EVLESNGSSSMASVCGSTLSLMDAGVPVKSPVAGIAMGLISEENHIAILSD--------- 485
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T G + +Q + S++ L AK+ ++
Sbjct: 486 IQGMEDHDGDMDFKVAGTSQG-VTALQMDIKIKGVSREILERALTQAKEGRLFILDKMLS 544
Query: 237 VISN 240
VI
Sbjct: 545 VIEK 548
Score = 93.0 bits (229), Expect = 3e-17, Method: Composition-based stats.
Identities = 34/240 (14%), Positives = 76/240 (31%), Gaps = 31/240 (12%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKHGWITAEYGML 66
R ++ + K A G+ ++GDT + AT E + + + G +
Sbjct: 15 RTMTFQTGKIGKQAGGAIFCRYGDTVVSAFATGSAQPREGIDFFPLTVEFEERLYAAGKI 74
Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
P R GR ++ R+I R +R + Q++ + D +
Sbjct: 75 PGGFIKR------EGRPSEKAILSARLIDRPIRPLFPEGYRNDVQVVAQVMSVDQDCASD 128
Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
I A A + +G VAA++ G++ I++ +
Sbjct: 129 ITGINAASAA-------------LTISNVPFEGPVAAVTVGLIGDEFIINPTVEQSEKSV 175
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK----DVISNEV 242
+ T ++ V+ A+ + + I + + + + + +
Sbjct: 176 MHLTVAGTKD-AVMMVEAGAQEVP--EAQMLEAIMFGHREIQRIAEFIENYRLEALERNL 232
>gi|238019453|ref|ZP_04599879.1| hypothetical protein VEIDISOL_01322 [Veillonella dispar ATCC 17748]
gi|237864152|gb|EEP65442.1| hypothetical protein VEIDISOL_01322 [Veillonella dispar ATCC 17748]
Length = 689
Score = 155 bits (392), Expect = 4e-36, Method: Composition-based stats.
Identities = 47/244 (19%), Positives = 88/244 (36%), Gaps = 18/244 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
+R GR+ +++R IS V GS L G T +L AT+ E + I
Sbjct: 309 IRPDGRKLDEVRPISCRTGVLPRTHGSGLFTRGQTQVLNVATVAPLSETQTIDGIGLETE 368
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y S G R+ G RAL V+ + +
Sbjct: 369 KRYIHHYNFPSFSVGETRSSRGPGRREIGHGAL----AERALVPVIPSEEEFPYALRLVS 424
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V++++G + A++ G+ ++L D ++ + V +G + D
Sbjct: 425 EVLESNGSSSMASVCGSTLSLMDAGVPIKAPVAGIAMGLVTQGE---------HYTILTD 475
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED+ D+D T G + +Q + + S++ L A ++ + D
Sbjct: 476 IQGMEDALGDMDFKVAGTAKG-VTAIQMDIKISGLSREILHEALEQAHKGRMHIMGIMLD 534
Query: 237 VISN 240
I+
Sbjct: 535 TIAE 538
Score = 113 bits (281), Expect = 3e-23, Method: Composition-based stats.
Identities = 42/229 (18%), Positives = 82/229 (35%), Gaps = 26/229 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEK---VPMWIRNTKHGWITAEYGMLP 67
R +++ ++K A G+ +V +GDT +L TAT ++ + + + G LP
Sbjct: 11 RTLTIETGELAKQAGGAVMVGYGDTRVLVTATGSKEAKDIDFFPLTVDYEEKMYAVGRLP 70
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R R + R+I R +R + D ++ + D
Sbjct: 71 GGFIKR------EARPPESAILNSRLIDRPIRPLFDKGVRNEVHVVATVMSVDQDCDPAI 124
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
+ GA A G +A + G + G IV+ + D+
Sbjct: 125 CGMIGASAA-------------LSISDIPWNGPIAGVRMGRINGEFIVNPTKEQLEATDL 171
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ T I+ V+G A+ ++ ++ A + I ++ Q+D
Sbjct: 172 NIVVAGTKD-AILMVEGGAQEVP--EETILEVIMAAHEEIKKIVAFQED 217
>gi|220916341|ref|YP_002491645.1| Polyribonucleotide nucleotidyltransferase [Anaeromyxobacter
dehalogenans 2CP-1]
gi|254782701|sp|B8JFZ1|PNP_ANAD2 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|219954195|gb|ACL64579.1| Polyribonucleotide nucleotidyltransferase [Anaeromyxobacter
dehalogenans 2CP-1]
Length = 721
Score = 155 bits (392), Expect = 4e-36, Method: Composition-based stats.
Identities = 46/242 (19%), Positives = 87/242 (35%), Gaps = 18/242 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +R+I+ + GS L G+T L TL +E+ +
Sbjct: 324 RIGGRGMADIRKITCEVGLLPRVHGSSLFTRGETQALVATTLGTAEDEQRVEMLTGMVFK 383
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + R+ G RALR+V+ + + D
Sbjct: 384 KFMLHYNFPPFSVGEVKFLRSPGRREIGHGAL----AERALRAVMPPEDQFPYTVRVVSD 439
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+++++G + A++ G ++L D ++ + + +G AI +
Sbjct: 440 IMESNGSSSMASVCGGCLSLMDAGVPIKAPVAGIAMGLIKEGEKIAILSD---------I 490
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T +G I +Q + ++D L A + ++
Sbjct: 491 LGDEDHLGDMDFKVCGTAAG-ITSIQMDIKIGGVTRDILEQALAQAAEGRKHILGEMAKA 549
Query: 238 IS 239
+S
Sbjct: 550 LS 551
Score = 98.0 bits (242), Expect = 9e-19, Method: Composition-based stats.
Identities = 47/229 (20%), Positives = 79/229 (34%), Gaps = 27/229 (11%)
Query: 13 EISLTRR-VSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKHGWITAEYGMLP 67
+I L V+K A GS V+ GD+ +L TA E + + + G +P
Sbjct: 14 DILLETGKVAKQAHGSVWVRLGDSIVLVTAVSAAEKKEGIDFFPLTVDYQEKLFAAGRVP 73
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
S R GR + R++ R+ R + Q+I + T
Sbjct: 74 GSFFRR------EGRPTEKETLTSRLVDRSCRPLFAEGYSNETQVIATVISFDQENDTDV 127
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
A+TGA ALH G +A + + G + + + + D+
Sbjct: 128 LALTGASAALH-------------ISDIPFGGPIAGVRVARVGGQLVANPTLAQRAEADL 174
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
D + IV V+G A+ S+ L + + L+ Q
Sbjct: 175 D-VVMAASRDAIVMVEGGAQE--VSEAVMIEALLFGQAAVQPLLDAQDA 220
>gi|302381329|ref|YP_003817152.1| polyribonucleotide nucleotidyltransferase [Brevundimonas
subvibrioides ATCC 15264]
gi|302191957|gb|ADK99528.1| polyribonucleotide nucleotidyltransferase [Brevundimonas
subvibrioides ATCC 15264]
Length = 764
Score = 155 bits (392), Expect = 4e-36, Method: Composition-based stats.
Identities = 47/241 (19%), Positives = 90/241 (37%), Gaps = 17/241 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +++R+I + GS L G+T + ATL +E+ + T
Sbjct: 333 RVDGRALDKVRDIVSEVGIFPRTHGSALFTRGETQAIVVATLGTGEDEQYVDSLAGTYKE 392
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + R+ G + RA+R ++ S I I +
Sbjct: 393 KFLLHYNFPPYSVGETGRMGGAGRREIGHGKL----AWRAIRPMLPTSEEFPYTIRIVSE 448
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ GA +AL D ++ + + +L+ + D+
Sbjct: 449 ITESNGSSSMASVCGASLALMDAGVPLKKPVSGIAMGLILEPS--------GEFAILSDI 500
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T G I +Q + A +++ + A ++
Sbjct: 501 LGDEDHLGDMDFKVAGTRDG-ITSLQMDIKVAGITEEIMKKAIAQASAGRLHILDEMDKA 559
Query: 238 I 238
I
Sbjct: 560 I 560
Score = 116 bits (291), Expect = 2e-24, Method: Composition-based stats.
Identities = 34/235 (14%), Positives = 73/235 (31%), Gaps = 28/235 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----HGWITAEYGML 66
R ++L +++ A+G+ L +G+T +L T + + T G +
Sbjct: 30 RPLTLETGRIARQADGAVLATYGETIVLATVVYGRAPKPGLDFFPLTVNYQEKTFAAGKI 89
Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
P R GR + + R+I R +R + Q++I +
Sbjct: 90 PGGYFKR------EGRPTEKETLVSRLIDRPIRPLFVKGFKNETQVVITVLQHDLENDPD 143
Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
+ A G + A G + G +++ +
Sbjct: 144 IVGMVATSAA-------------LTLSGVPFMGPIGAARVGYIDGEFVLNPTLDQMPDSQ 190
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
+D T ++ V+ A+ S+ L A + +I + ++
Sbjct: 191 LDLVVAGTSD-ALMMVESEAKE--LSEQVMLDALMFAHRGMQPVIDAIIE-MAEH 241
>gi|320537764|ref|ZP_08037687.1| polyribonucleotide nucleotidyltransferase [Treponema phagedenis
F0421]
gi|320145387|gb|EFW37080.1| polyribonucleotide nucleotidyltransferase [Treponema phagedenis
F0421]
Length = 700
Score = 155 bits (392), Expect = 4e-36, Method: Composition-based stats.
Identities = 47/244 (19%), Positives = 86/244 (35%), Gaps = 19/244 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
+R+ GR ++R I+ V GS + G+T L TL +E+V I +
Sbjct: 313 LRVDGRNTEEIRPITCEIGVLPRPHGSAVFTRGETQSLAVVTLGTVFDEQVYDDIEGDRR 372
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P S G + R+ G R+L ++ + +
Sbjct: 373 ENFILHYNFPPFSVGEVGRMGTGR-REIGHGYL----AHRSLSPMIPSREKFPYTVRVVS 427
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
++++++G + A + G ++L M+ + + G AI
Sbjct: 428 EILESNGSSSMATVCGGTLSLLHAGVPMKSPVAGIAMGLITDGDRYAILSD--------- 478
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T++G I Q + A S + L AK ++ +
Sbjct: 479 ILGEEDHLGDMDFKVAGTENG-ITGFQMDIKIAGVSSEIMKNALAQAKRGRMHILGIMNQ 537
Query: 237 VISN 240
IS
Sbjct: 538 TISK 541
Score = 96.1 bits (237), Expect = 4e-18, Method: Composition-based stats.
Identities = 41/229 (17%), Positives = 77/229 (33%), Gaps = 27/229 (11%)
Query: 13 EISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT----KHGWITAEYGMLP 67
E+ L ++K A G+ +FG + +L T ++ + + G +P
Sbjct: 13 ELILETGRLAKQANGAIFAQFGGSAVLATVCASDQSQEGLDYVPLTVDYNEKYYAAGKIP 72
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R GR + + R+I R +R + + QII C
Sbjct: 73 GGFIKR------EGRPKDKEILVSRLIDRPMRPLFEKDFGRDIQIIPTCVSSDMINPPDI 126
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
A+ + A+ G VAA + G +++ + + ++
Sbjct: 127 LAVIASSAAV-------------VISDIPFNGPVAAARIAYVNGEYVINPTFKQIDRAEM 173
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ T G I V+G A S++ L A + I + LQ+
Sbjct: 174 EIVVAGTKEG-ITMVEGGAHE--VSEEVMLTALEKAHEFIKIICDLQEQ 219
>gi|269797830|ref|YP_003311730.1| 3' exoribonuclease [Veillonella parvula DSM 2008]
gi|269094459|gb|ACZ24450.1| 3' exoribonuclease [Veillonella parvula DSM 2008]
Length = 689
Score = 155 bits (392), Expect = 4e-36, Method: Composition-based stats.
Identities = 46/244 (18%), Positives = 88/244 (36%), Gaps = 18/244 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
+R GRQ +++R IS V GS L G T +L T+ E++ +
Sbjct: 309 IRPDGRQLDEVRPISCRTGVLPRTHGSGLFTRGQTQVLNVITVAPLSEKQTIDGLGVETE 368
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y S G R+ G RAL V+ + +
Sbjct: 369 KRYIHHYNFPSFSVGETRSSRGPGRREIGHGAL----AERALVPVIPSEEDFPYALRLVS 424
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V++++G + A++ G+ ++L D ++ + V +G + D
Sbjct: 425 EVLESNGSSSMASVCGSTLSLMDAGVPIKAPVAGIAMGLVTQGE---------HYTILTD 475
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED+ D+D T G + +Q + + S++ L A ++ + D
Sbjct: 476 IQGMEDALGDMDFKVAGTAKG-VTAIQMDIKISGLSREILQEALEQAHKGRMHIMGIMLD 534
Query: 237 VISN 240
I+
Sbjct: 535 TIAE 538
Score = 113 bits (283), Expect = 2e-23, Method: Composition-based stats.
Identities = 42/229 (18%), Positives = 82/229 (35%), Gaps = 26/229 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEK---VPMWIRNTKHGWITAEYGMLP 67
R +++ ++K A G+ +V +GDT +L TAT ++ + + + G LP
Sbjct: 11 RTLTIETGELAKQAGGAVMVGYGDTRVLVTATGSKEAKDIDFFPLTVDYEEKMYAVGRLP 70
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R R + R+I R +R + + ++ + D
Sbjct: 71 GGFIKR------EARPPESAILNSRLIDRPIRPLFNKGVRNEVHVVATVMSVDQDCDPAI 124
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
+ GA A G +A + G + G +V+ + D+
Sbjct: 125 CGMIGASAA-------------LSISDVPWNGPIAGVRMGRINGEFVVNPTKAQLEETDL 171
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ T I+ V+G AE +D ++ A + I ++ Q+D
Sbjct: 172 NIVVAGTKD-AILMVEGGAEEVP--EDIILEVIMAAHEEIKKIVAFQED 217
>gi|261392873|emb|CAX50454.1| polyribonucleotide nucleotidyltransferase (polynucleotide
phosphorylase; PNPase; CAP87K) [Neisseria meningitidis
8013]
Length = 706
Score = 155 bits (392), Expect = 4e-36, Method: Composition-based stats.
Identities = 46/242 (19%), Positives = 93/242 (38%), Gaps = 18/242 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +R +++ V GS L G+T L ATL +E++ +
Sbjct: 316 RIDGRDTRTVRPLNIQTSVLPRTHGSALFTRGETQALAVATLGTSRDEQIIDALSGEYTD 375
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P STG + A R+ G + RAL +V+ S + + +
Sbjct: 376 RFMLHYNFPPYSTGEVGRVGAPKRREIGHGRL----AKRALLAVLPKPEDFSYTMRVVSE 431
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ G ++L ++ + +L+G+ A+ +
Sbjct: 432 ITESNGSSSMASVCGGCLSLLSAGVPLKAHVAGIAMGLILEGNKFAVLTD---------I 482
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T G + +Q + +++ L AK+ ++ K
Sbjct: 483 LGDEDHLGDMDFKVAGTTEG-VTALQMDIKIQGITKEIMQIALAQAKEARLHILDQMKAA 541
Query: 238 IS 239
++
Sbjct: 542 VA 543
Score = 89.5 bits (220), Expect = 4e-16, Method: Composition-based stats.
Identities = 37/228 (16%), Positives = 75/228 (32%), Gaps = 27/228 (11%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGMLPR 68
++L +++ A + V GDT +L T ++E + + T G +P
Sbjct: 16 VTLETGEIARQAAAAVKVSMGDTVVLVAVTTNKEVKEGQDFFPLTVDYLERTYAAGKIPG 75
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
R G+Q + R+I R +R + QI+ + + +
Sbjct: 76 GFFKR------EGKQSEKEILTSRLIDRPIRPLFPEGFYHDIQIVAMVVSVDPEIDSDIP 129
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+ GA A G + A G + G +++ E + +D
Sbjct: 130 AMLGASAA-------------LVLSGVPFAGPIGAARVGYINGVYVLNPTKAELAKSQLD 176
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
T ++ V+ A+ +D + D++ I +
Sbjct: 177 LVVAGTSK-AVLMVESEAKI--LPEDVMLGAVVYGHDQMQVAINAINE 221
>gi|163796758|ref|ZP_02190716.1| Polyribonucleotide nucleotidyltransferase [alpha proteobacterium
BAL199]
gi|159178012|gb|EDP62559.1| Polyribonucleotide nucleotidyltransferase [alpha proteobacterium
BAL199]
Length = 684
Score = 155 bits (392), Expect = 4e-36, Method: Composition-based stats.
Identities = 43/243 (17%), Positives = 86/243 (35%), Gaps = 18/243 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +R I + GS L G+T L TL +E++ +
Sbjct: 291 RIDGRDTKTVRPIVAEVGILPRTHGSALFTRGETQALVVTTLGTGQDEQIVDALDGEYRE 350
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + + R+ G + RA R ++ + + +
Sbjct: 351 NFMLHYNFPPYSVGEAGRMGSPGRREIGHGKL----AWRATRPLMPTKDAFPYTVRVVSE 406
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A + G +A+ D + + + +G A+ +
Sbjct: 407 ITESNGSSSMATVCGTSLAMMDAGVPLPRPIAGIAMGLIKEGEQFAVLSD---------I 457
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D TD G I +Q + + +++ L A+D ++
Sbjct: 458 LGDEDHLGDMDFKVAGTDKG-ITALQMDIKITSITKEIMDVALGQARDGRLHILGEMAKA 516
Query: 238 ISN 240
++N
Sbjct: 517 LTN 519
Score = 100 bits (248), Expect = 2e-19, Method: Composition-based stats.
Identities = 35/221 (15%), Positives = 74/221 (33%), Gaps = 26/221 (11%)
Query: 20 VSKYAEGSCLVKFGDTHLLTTATLEE----KVPMWIRNTKHGWITAEYGMLPRSTGNRVK 75
+++ A+G+ + ++GDT +L T + + + + + T G +P R
Sbjct: 1 MARQADGAVVARYGDTVVLCTVVAAKTPRQGIDFFPLSVHYQEKTYSAGKIPGGFFKR-- 58
Query: 76 REAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWV 135
GR + R+I R +R + Q+I + A+ G
Sbjct: 59 ----EGRPTEKEVLTSRLIDRPIRPLFVKGFKNETQVICTVLAHDLENDPDVVAMVGTSA 114
Query: 136 ALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTD 195
AL G +A G G +++ + T D+D T
Sbjct: 115 ALC-------------ISGVPFLGPIAGCRVGYTNGEYVLNPLMEDAKTSDLDLMVAGTQ 161
Query: 196 SGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
G ++ V+ A +++ + + +I+ +
Sbjct: 162 EG-VLMVESMASE--LTEEVMLGAVTFGHESFQPVIQAIIE 199
>gi|283782839|ref|YP_003373593.1| tRNA nucleotidyltransferase [Gardnerella vaginalis 409-05]
gi|283441100|gb|ADB13566.1| tRNA nucleotidyltransferase [Gardnerella vaginalis 409-05]
Length = 253
Score = 155 bits (392), Expect = 4e-36, Method: Composition-based stats.
Identities = 105/229 (45%), Positives = 151/229 (65%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+R+ GR +++R + +TR+ + EGS L++ G+T ++ TAT VP W R++ GW+T
Sbjct: 14 IRVDGRDVDELRPVHITRKFTDVPEGSVLIECGNTRVMCTATFTVGVPRWRRDSGLGWVT 73
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEY MLPR+T R RE+V G+ GGR+ EI R+IGR LR VVD+ A+G QI IDCDV+Q
Sbjct: 74 AEYSMLPRATAERTDRESVRGKIGGRTHEISRLIGRCLRGVVDMKAMGECQIQIDCDVLQ 133
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA++TGA+VAL D L E + + V+K ++A+S G++ G P++DL Y
Sbjct: 134 ADGGTRTASVTGAYVALVDALHWAEKNGHIRSAANVIKDSISAVSVGVINGTPMLDLPYV 193
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIAD 229
EDS D N MT SG +E+QG+AE F++D +L+LA +
Sbjct: 194 EDSQAMTDMNVAMTGSGTFIEIQGTAEHRPFNRDELNTLLDLATKGNRE 242
>gi|260495072|ref|ZP_05815201.1| polyribonucleotide nucleotidyltransferase [Fusobacterium sp.
3_1_33]
gi|260197515|gb|EEW95033.1| polyribonucleotide nucleotidyltransferase [Fusobacterium sp.
3_1_33]
Length = 703
Score = 155 bits (392), Expect = 4e-36, Method: Composition-based stats.
Identities = 47/243 (19%), Positives = 91/243 (37%), Gaps = 18/243 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR ++R + V GS L G+T L TL +E++ + +
Sbjct: 328 RVDGRTTTEIRPLDAQINVLPIPHGSALFTRGETQSLAITTLGTKEDEQLIDDLEKEYYK 387
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + + R+ G RALR V+ I + +
Sbjct: 388 KFYLHYNFPPYSVGEVGRMGSPGRRELGHGSL----AERALRYVIPTEEEFPYTIRVVSE 443
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A+I G ++L +++ + + +G + ++
Sbjct: 444 ITESNGSSSQASICGGSLSLMAAGVPIKEHVAGIAMGLIKEGEEFTVLTDIM-------- 495
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T SG I +Q + +++ LN A ++++L +
Sbjct: 496 -GLEDHLGDMDFKVAGTKSG-ITALQMDIKITGITEEIMRIALNQAHQARLEILELMNNT 553
Query: 238 ISN 240
IS
Sbjct: 554 ISK 556
Score = 100 bits (248), Expect = 2e-19, Method: Composition-based stats.
Identities = 38/230 (16%), Positives = 79/230 (34%), Gaps = 27/230 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGML 66
R + ++ +S+ + G+ ++++GDT LL+TA + + + G
Sbjct: 18 RTLKVSTGKISRQSSGAIVIQYGDTVLLSTANRSKEARKGADFFPLTVDYIEKFYSTGKF 77
Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
P R GR + + R+I R +R + I+
Sbjct: 78 PGGFNKR------EGRPSTNATLVARLIDRPIRPMFPDGFNYDVHIVNTVLSYDEINTPD 131
Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
I G+ +AL G VA ++ G G I++ E +
Sbjct: 132 YLGIIGSSLALM-------------ISDIPFLGPVAGVTVGYKNGEFILNPSPKELEESE 178
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+D + T + V+ A+ ++ + A + I + + Q++
Sbjct: 179 LDLSVAGTKE-AVNMVEAGAKE--LDEETMLKAIMFAHENIKKICEFQEE 225
>gi|126698917|ref|YP_001087814.1| polynucleotide phosphorylase/polyadenylase [Clostridium difficile
630]
gi|254974863|ref|ZP_05271335.1| polynucleotide phosphorylase/polyadenylase [Clostridium difficile
QCD-66c26]
gi|255092250|ref|ZP_05321728.1| polynucleotide phosphorylase/polyadenylase [Clostridium difficile
CIP 107932]
gi|255100339|ref|ZP_05329316.1| polynucleotide phosphorylase/polyadenylase [Clostridium difficile
QCD-63q42]
gi|255306276|ref|ZP_05350447.1| polynucleotide phosphorylase/polyadenylase [Clostridium difficile
ATCC 43255]
gi|255313990|ref|ZP_05355573.1| polynucleotide phosphorylase/polyadenylase [Clostridium difficile
QCD-76w55]
gi|255516670|ref|ZP_05384346.1| polynucleotide phosphorylase/polyadenylase [Clostridium difficile
QCD-97b34]
gi|255649769|ref|ZP_05396671.1| polynucleotide phosphorylase/polyadenylase [Clostridium difficile
QCD-37x79]
gi|260682926|ref|YP_003214211.1| polynucleotide phosphorylase/polyadenylase [Clostridium difficile
CD196]
gi|260686524|ref|YP_003217657.1| polynucleotide phosphorylase/polyadenylase [Clostridium difficile
R20291]
gi|306519874|ref|ZP_07406221.1| polynucleotide phosphorylase/polyadenylase [Clostridium difficile
QCD-32g58]
gi|123363602|sp|Q18BI4|PNP_CLOD6 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|115250354|emb|CAJ68176.1| Polyribonucleotide nucleotidyltransferase [Clostridium difficile]
gi|260209089|emb|CBA62243.1| polyribonucleotide nucleotidyltransferase [Clostridium difficile
CD196]
gi|260212540|emb|CBE03500.1| polyribonucleotide nucleotidyltransferase [Clostridium difficile
R20291]
Length = 703
Score = 155 bits (392), Expect = 4e-36, Method: Composition-based stats.
Identities = 44/244 (18%), Positives = 84/244 (34%), Gaps = 18/244 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56
+R R+ ++R I + A GS + G T +L AT + + + ++
Sbjct: 316 VRPDNRKLEEIRPIWCETGMIPRAHGSAIFTRGQTQVLNVATLGALGDVQKLDGLDEEEN 375
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y S G R+ G RAL V+ I +
Sbjct: 376 KRYMHHYNFPAYSVGEARPSRGPGRREIGHGAL----AERALLPVIPSQEEFPYAIRLVS 431
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V+ ++G T A++ G+ ++L D ++D + + A+
Sbjct: 432 EVLSSNGSTSQASVCGSTLSLLDAGVPIKDMVAGIAMGLIKHDGKVAVLSD--------- 482
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T+ G I +Q + ++ L AK+ ++ +
Sbjct: 483 IQGMEDHLGDMDFKVAGTEYG-ITAIQMDIKIDGIDKEILQRALKQAKEGRIHILGEMRK 541
Query: 237 VISN 240
IS
Sbjct: 542 TISQ 545
Score = 92.2 bits (227), Expect = 5e-17, Method: Composition-based stats.
Identities = 33/234 (14%), Positives = 83/234 (35%), Gaps = 27/234 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLT----TATLEEKVPMWIRNTKHGWITAEYGML 66
RE+S+ + + A GSC+V++ D+ ++ +A + + + + + G +
Sbjct: 14 RELSVEIGKICEMASGSCIVRYSDSMVMVNTTKSAKPRDGIDFFPLSVDYEEKLYSVGKI 73
Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
P R G+ ++ R+I R +R + Q++ + D
Sbjct: 74 PGGFLKR------EGKPSEKAILTSRLIDRPIRPLFPKGFRNDVQVVATVLSVDQDCTPD 127
Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
A+ G+ +A G ++ G++ G +V+ + +
Sbjct: 128 IVAMIGSSIA-------------LSISDIPFNGPTGSVCVGLVDGAFVVNPNAEQREKSS 174
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
+ T I+ V+ A+ + + A I +++ + +++
Sbjct: 175 MHLVVSGTKE-AIMMVEAGADEVP--DEVMLDAILFAHQEIKKIVEFIEGIVAE 225
>gi|119470827|ref|ZP_01613438.1| polynucleotide phosphorylase, has polyadenylase activity; part of
the degradosome [Alteromonadales bacterium TW-7]
gi|119446054|gb|EAW27333.1| polynucleotide phosphorylase, has polyadenylase activity; part of
the degradosome [Alteromonadales bacterium TW-7]
Length = 708
Score = 155 bits (392), Expect = 5e-36, Method: Composition-based stats.
Identities = 43/242 (17%), Positives = 89/242 (36%), Gaps = 18/242 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR+ + +R + + V GS + G+T L TATL + ++ + T
Sbjct: 317 RIDGREPDMIRALDVMTGVLPRTHGSAIFTRGETQALVTATLGTERDSQLIDDLTGTHKN 376
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P G + R+ G R +++V+ I + +
Sbjct: 377 HFMLNYNFPPFCVGETGFVGSPKRREIGHGNL----AKRGIQAVMPTLTDFPYSIRVVSE 432
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ G +AL + ++ + V + + +
Sbjct: 433 ITESNGSSSMASVCGTSLALMNAGVPIKASVAGIAMGLVKEDEKFVVLSD---------I 483
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T +G I +Q + +Q+ L AK ++++ +
Sbjct: 484 LGDEDHLGDMDFKVAGTTNG-ITALQMDIKIEGITQEIMQIALKQAKAARLHILEVMDEA 542
Query: 238 IS 239
IS
Sbjct: 543 IS 544
Score = 101 bits (250), Expect = 1e-19, Method: Composition-based stats.
Identities = 35/228 (15%), Positives = 72/228 (31%), Gaps = 27/228 (11%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----HGWITAEYGMLPR 68
++L +++ A+G+ L GDT +L T + + + G +P
Sbjct: 15 VTLETGAIARQADGAVLASIGDTSVLVTVVGKREAQPGQDFFPLTVNYQERMYAAGRIPG 74
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
R GR I R+I R +R + + Q+I + +
Sbjct: 75 GFLKR------EGRPNDGETLIARLIDRPIRPLFPNGFVNEVQVIATVVSVNPEIQPDMV 128
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+ G A G + A G + G +++ E +D
Sbjct: 129 AMIGTSAA-------------LAISGIPFSGPIGAARVGYIGGEYVLNPTLKELEESQLD 175
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
T ++ V+ +E ++D + ++ +I +
Sbjct: 176 LVVAGT-DNAVLMVE--SEADVLAEDVMLGAVVYGHEQSQSIINAINE 220
>gi|319761758|ref|YP_004125695.1| polyribonucleotide nucleotidyltransferase [Alicycliphilus
denitrificans BC]
gi|330826538|ref|YP_004389841.1| polyribonucleotide nucleotidyltransferase [Alicycliphilus
denitrificans K601]
gi|317116319|gb|ADU98807.1| polyribonucleotide nucleotidyltransferase [Alicycliphilus
denitrificans BC]
gi|329311910|gb|AEB86325.1| polyribonucleotide nucleotidyltransferase [Alicycliphilus
denitrificans K601]
Length = 731
Score = 155 bits (392), Expect = 5e-36, Method: Composition-based stats.
Identities = 42/243 (17%), Positives = 89/243 (36%), Gaps = 18/243 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +R I + V GS L G+T L +TL + + +
Sbjct: 317 RIDGRDTRTVRPIEIRTSVLPRTHGSALFTRGETQALVVSTLGTERDAQRIDALAGEFED 376
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y M P +TG + + R+ G + RAL + + I + +
Sbjct: 377 RFLFHYNMPPFATGEVGRMGSTKRREVGHGRL----AKRALVACLPSKEEFPYTIRVVSE 432
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ G +++ D M+ + + + + A+ +
Sbjct: 433 ITESNGSSSMASVCGGCLSMMDAGVPMKAHVAGIAMGLIKEDNKFAVLTD---------I 483
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T +G I +Q + +++ L AK+ ++ ++
Sbjct: 484 LGDEDHLGDMDFKVAGTTAG-ITALQMDIKIQGITKEIMQVALAQAKEARMHILGKMQEA 542
Query: 238 ISN 240
+
Sbjct: 543 MGE 545
Score = 91.4 bits (225), Expect = 1e-16, Method: Composition-based stats.
Identities = 34/233 (14%), Positives = 71/233 (30%), Gaps = 31/233 (13%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT----KHGWITAEYGMLPR 68
+++ +++ A G+ LV DT +L T + + T G +P
Sbjct: 18 VTMETGEIARQASGAVLVNIDDTVVLATVVASKNAKPGQDFFPLTVDYIEKTYAAGKIPG 77
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
S R + R+I R +R + ++I + + A
Sbjct: 78 SFFKR------EAKPSELETLTSRLIDRPIRPLFPEGFYNEVHVVIHTISLNPEVDADIA 131
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+ A G + A G + G +++ +D
Sbjct: 132 AMIATSAA-------------LSVSGIPFNGPIGAARVGYINGEYVLNPGQTARKNSQMD 178
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAML----NLAKDRIADLIKLQKDV 237
T++ ++ V+ +E +D + K I + +L +D
Sbjct: 179 LVVAGTET-AVLMVE--SEALQLPEDVMLGAVVYGHEQGKIAIDAIHELVRDA 228
>gi|255655329|ref|ZP_05400738.1| polynucleotide phosphorylase/polyadenylase [Clostridium difficile
QCD-23m63]
gi|296451314|ref|ZP_06893054.1| polyribonucleotide nucleotidyltransferase [Clostridium difficile
NAP08]
gi|296880334|ref|ZP_06904297.1| polyribonucleotide nucleotidyltransferase [Clostridium difficile
NAP07]
gi|296259920|gb|EFH06775.1| polyribonucleotide nucleotidyltransferase [Clostridium difficile
NAP08]
gi|296428575|gb|EFH14459.1| polyribonucleotide nucleotidyltransferase [Clostridium difficile
NAP07]
Length = 703
Score = 155 bits (392), Expect = 5e-36, Method: Composition-based stats.
Identities = 44/244 (18%), Positives = 84/244 (34%), Gaps = 18/244 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56
+R R+ ++R I + A GS + G T +L AT + + + ++
Sbjct: 316 VRPDNRKLEEIRPIWCETGMIPRAHGSAIFTRGQTQVLNVATLGALGDVQKLDGLDEEEN 375
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y S G R+ G RAL V+ I +
Sbjct: 376 KRYMHHYNFPAYSVGEARPSRGPGRREIGHGAL----AERALLPVIPSQEEFPYAIRLVS 431
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V+ ++G T A++ G+ ++L D ++D + + A+
Sbjct: 432 EVLSSNGSTSQASVCGSTLSLLDAGVPIKDMVAGIAMGLIKHDGKVAVLSD--------- 482
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T+ G I +Q + ++ L AK+ ++ +
Sbjct: 483 IQGMEDHLGDMDFKVAGTEYG-ITAIQMDIKIDGIDKEILQRALKQAKEGRIHILGEMRK 541
Query: 237 VISN 240
IS
Sbjct: 542 TISQ 545
Score = 92.6 bits (228), Expect = 5e-17, Method: Composition-based stats.
Identities = 33/234 (14%), Positives = 83/234 (35%), Gaps = 27/234 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLT----TATLEEKVPMWIRNTKHGWITAEYGML 66
RE+S+ + + A GSC+V++ D+ ++ +A + + + + + G +
Sbjct: 14 RELSVEIGKICEMASGSCIVRYSDSMVMVNTTKSAKPRDGIDFFPLSVDYEEKLYSVGKI 73
Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
P R G+ ++ R+I R +R + Q++ + D
Sbjct: 74 PGGFLKR------EGKPSEKAILTSRLIDRPIRPLFPKGFRNDVQVVATVLSVDQDCTPD 127
Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
A+ G+ +A G ++ G++ G +V+ + +
Sbjct: 128 IVAMIGSSIA-------------LSISDIPFNGPTGSVCIGLVDGAFVVNPNAEQREKSS 174
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
+ T I+ V+ A+ + + A I +++ + +++
Sbjct: 175 MHLVVSGTKE-AIMMVEAGADEVP--DEVMLDAILFAHQEIKKIVEFIEGIVAE 225
>gi|262066017|ref|ZP_06025629.1| polyribonucleotide nucleotidyltransferase [Fusobacterium
periodonticum ATCC 33693]
gi|291380267|gb|EFE87785.1| polyribonucleotide nucleotidyltransferase [Fusobacterium
periodonticum ATCC 33693]
Length = 699
Score = 155 bits (391), Expect = 5e-36, Method: Composition-based stats.
Identities = 46/243 (18%), Positives = 91/243 (37%), Gaps = 18/243 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR ++R + V GS L G+T L TL +E++ + +
Sbjct: 324 RVDGRTTTEIRPLDAQINVLPIPHGSALFTRGETQSLAITTLGTKSDEQLIDDLEKEYYK 383
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + + R+ G RALR V+ I + +
Sbjct: 384 KFYLHYNFPPYSVGEVGRMGSPGRRELGHGSL----AERALRYVIPSEEEFPYTIRVVSE 439
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A+I G ++L +++ + + +G + ++
Sbjct: 440 ITESNGSSSQASICGGSLSLMSAGVPIKEHVAGIAMGLIKEGEEFTVLTDIM-------- 491
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T SG I +Q + +++ LN A + ++++ +
Sbjct: 492 -GLEDHLGDMDFKVAGTKSG-ITALQMDIKITGITEEIMRIALNQAHEARQQILEVMNNT 549
Query: 238 ISN 240
IS
Sbjct: 550 ISK 552
Score = 102 bits (254), Expect = 4e-20, Method: Composition-based stats.
Identities = 39/230 (16%), Positives = 79/230 (34%), Gaps = 27/230 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGML 66
R + ++ +S+ + G+ ++++GDT +L+TA + + + G
Sbjct: 14 RTLKVSTGKISRQSSGAIVIQYGDTVVLSTANRSKEARKGADFFPLTVDYVEKFYSTGKF 73
Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
P R GR + I R+I R +R + I+
Sbjct: 74 PGGFNKR------EGRPSTNATLIARLIDRPIRPMFPDGFNYDVHIVNTVLSYDEVSTPD 127
Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
I G+ +AL G VA ++ G G I++ E +
Sbjct: 128 YLGIIGSSLALM-------------ISDIPFLGPVAGVTVGYKNGEFILNPSPAELEESE 174
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+D + T + V+ A+ ++ + A D I + + Q++
Sbjct: 175 LDLSVAGTKD-AVNMVEAGAKE--LDEETMLKAIMFAHDNIKKICEFQEE 221
>gi|154486637|ref|ZP_02028044.1| hypothetical protein BIFADO_00454 [Bifidobacterium adolescentis
L2-32]
gi|154084500|gb|EDN83545.1| hypothetical protein BIFADO_00454 [Bifidobacterium adolescentis
L2-32]
Length = 254
Score = 155 bits (391), Expect = 5e-36, Method: Composition-based stats.
Identities = 105/229 (45%), Positives = 152/229 (66%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+R GR+ +++R + +TR + EGS L++ G+T ++ TAT VP W +++ GW+T
Sbjct: 14 VRADGRKVDELRPVRITRHFTDVPEGSVLIECGNTRVMCTATFTAGVPRWRKDSGLGWVT 73
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEY MLPR+T +R RE+V G+ GGR+ EI R+IGR LR VVD+ ALG Q+ IDCDV+Q
Sbjct: 74 AEYAMLPRATADRTDRESVRGKIGGRTHEISRLIGRCLRGVVDMKALGENQVQIDCDVLQ 133
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+ITGA+VAL D + E+ + +VLK V+A+S G++ G P++DL Y
Sbjct: 134 ADGGTRTASITGAYVALVDAMHWAEEHKHVKSADRVLKDWVSAVSVGVINGKPMLDLPYI 193
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIAD 229
EDS D N MT SG +E+QG+AE F++ +L+LA+ +
Sbjct: 194 EDSQAMTDMNVAMTGSGDFIEIQGTAEHRPFNRAELNTLLDLAEKGNRE 242
>gi|126736200|ref|ZP_01751943.1| polyribonucleotide nucleotidyltransferase [Roseobacter sp. CCS2]
gi|126714366|gb|EBA11234.1| polyribonucleotide nucleotidyltransferase [Roseobacter sp. CCS2]
Length = 710
Score = 155 bits (391), Expect = 5e-36, Method: Composition-based stats.
Identities = 43/241 (17%), Positives = 88/241 (36%), Gaps = 17/241 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR + +R I + GS L G+T L TL +E++ +
Sbjct: 318 RIDGRALDTIRPIVSETGILPRTHGSALFTRGETQGLVVTTLGTGDDEQMIDALTGMYKS 377
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + R+ G + RAL++V+ + I + +
Sbjct: 378 NFMLHYNFPPYSVGEVGRVSGPGRREIGHGKL----AWRALQAVLPAATDFPYTIRLVSE 433
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ G +++ D ++ + V++ + D+
Sbjct: 434 ITESNGSSSMASVCGGSLSMMDAGVPLKAPVAGVAMGLVMEDD--------GEYAILSDI 485
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T++G I +Q + A + + L AK ++
Sbjct: 486 LGDEDHLGDMDFKVAGTENG-ITSLQMDIKIAGITPEIMSKALAQAKAGRLHILGEMGKA 544
Query: 238 I 238
+
Sbjct: 545 L 545
Score = 106 bits (265), Expect = 2e-21, Method: Composition-based stats.
Identities = 33/228 (14%), Positives = 65/228 (28%), Gaps = 25/228 (10%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGN 72
++L V++ A+GS + G+T ++ T K E
Sbjct: 16 LTLETGKVARQADGSVIATLGETSVMANVTFARKQKPGQDFFPLTVHYQEKYYAAGKVP- 74
Query: 73 RVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITG 132
R + R+I R +R + ++ A+
Sbjct: 75 -GGFFKREARPTEKETLTSRLIDRPIRPLFVPGFKNEVLVMCTVLSHDMVNDPDMVAMIA 133
Query: 133 AWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDST------ID 186
A A +G +AA G G I++ + +
Sbjct: 134 ASAA-------------LTISGAPFRGPIAACRVGFEDGEYILNPEIDDMHNLRLNPEQR 180
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
+D T ++ V+ A ++D + A ++I +I L
Sbjct: 181 LDLVVAGTKD-AVMMVESEAYE--LTEDEMLGAVTFAHEQIQPVIDLI 225
>gi|71064655|ref|YP_263382.1| polynucleotide phosphorylase/polyadenylase [Psychrobacter arcticus
273-4]
gi|123761801|sp|Q4FVL0|PNP_PSYA2 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|71037640|gb|AAZ17948.1| putative polyribonucleotide nucleotidyltransferase [Psychrobacter
arcticus 273-4]
Length = 700
Score = 155 bits (391), Expect = 5e-36, Method: Composition-based stats.
Identities = 44/239 (18%), Positives = 86/239 (35%), Gaps = 10/239 (4%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R+ GR +R + + V + GS L G+T L T TL + + ++ G I
Sbjct: 320 RIDGRDLETVRALDVQVGVLPFTHGSALFTRGETQALVTTTLGNTRDVNMIDSLAGTIRD 379
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
+ + V G R R+ R +++++ S I + ++ ++
Sbjct: 380 HFMLHYNFPHFSVGETGREGIPKRREIGHGRLARRGVQAMLPDSDRFPYVIRVVSEITES 439
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
+G + A++ GA +AL D ++ + V +G A+ + E
Sbjct: 440 NGSSSMASVCGASLALMDAGVPIKAPVAGIAMGLVKEGERFAVLSD---------ILGDE 490
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
D D+D + G I +Q + + D L A ++ V+
Sbjct: 491 DHLGDMDFKVAGSKDG-ITALQMDIKIEGITPDIMEQALKQAHAGRIHILDAMNKVLPE 548
Score = 79.5 bits (194), Expect = 4e-13, Method: Composition-based stats.
Identities = 42/224 (18%), Positives = 72/224 (32%), Gaps = 28/224 (12%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGMLPR 68
+ + +++ A S LV G +L A + +E + + G +P
Sbjct: 18 VVIETGRIARQAN-SILVHMGGVTVLVAAVVKSDAKEGQNFFPLTVNYQEKMYAAGKIPG 76
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
+ G R GR R+I R +R + + QI A
Sbjct: 77 AYGKR------EGRASESETLTSRLIDRPIRPLFPEGYVNEIQITATVVSSDKTQSADIA 130
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+ GA A G VAA G + G +++ E D+D
Sbjct: 131 ALIGASAA-------------LAISDAPFNGPVAAARVGFINGEYVLNPTLEELKESDLD 177
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
T S ++ V+ +E A S+D + + +I
Sbjct: 178 LVVAGTKS-AVLMVE--SEAAELSEDQMLGAVLYGHQQQQIVID 218
>gi|296129173|ref|YP_003636423.1| ribonuclease PH [Cellulomonas flavigena DSM 20109]
gi|296020988|gb|ADG74224.1| ribonuclease PH [Cellulomonas flavigena DSM 20109]
Length = 257
Score = 155 bits (391), Expect = 5e-36, Method: Composition-based stats.
Identities = 110/226 (48%), Positives = 150/226 (66%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR GR+ +++R +++TRR EGS LV+FG T +L A+ E VP W + + GW+T
Sbjct: 1 MRKDGRRADELRPVTITRRFLDAGEGSVLVEFGGTKVLCVASFTEGVPRWRKGSGEGWVT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEY MLPR+T +R RE+V G+ GGR+ EI R++GR+LR+VVD++ALG I++DCDV+Q
Sbjct: 61 AEYAMLPRATNSRSDRESVRGKVGGRTHEISRLVGRSLRAVVDVAALGENTIVLDCDVLQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTAAITGA+VAL D + VL+ VAAIS G++ G P++DL Y
Sbjct: 121 ADGGTRTAAITGAYVALADAVAWATTKRLVKPGRTVLRDSVAAISVGVVDGVPVLDLPYE 180
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226
ED + D N V T +G VEVQG+AE A F + A+L+LA
Sbjct: 181 EDVRAETDMNVVTTGAGAFVEVQGTAEHAPFDRAELDALLDLAVAG 226
>gi|326387915|ref|ZP_08209521.1| ribonuclease PH [Novosphingobium nitrogenifigens DSM 19370]
gi|326207961|gb|EGD58772.1| ribonuclease PH [Novosphingobium nitrogenifigens DSM 19370]
Length = 238
Score = 155 bits (391), Expect = 5e-36, Method: Composition-based stats.
Identities = 119/237 (50%), Positives = 161/237 (67%), Gaps = 2/237 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR SGR ++MR I++ +K+AEGS L+ FGDT ++ TA++EE+VP ++R GW+T
Sbjct: 1 MRASGRAADEMRAITIETHFTKHAEGSVLIGFGDTKVIVTASVEERVPPFLRGKGEGWVT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEY MLPR+T R REA G+Q GR+QEIQR+IGR+LR+V DL LG RQI +DCDVIQ
Sbjct: 61 AEYSMLPRATHTRGSREAAKGKQSGRTQEIQRLIGRSLRAVTDLKKLGERQITLDCDVIQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+I+GAW+AL + + + K VAAISCG++ G P++DLDY
Sbjct: 121 ADGGTRTASISGAWIALRLAVDKLMASGQIKEDPLPRK--VAAISCGIVDGTPVLDLDYT 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
EDST D DANFV+ + G I EVQ +AE AT+ ++ +L LA+ ++ Q
Sbjct: 179 EDSTADADANFVLIEGGQIAEVQATAEGATYDEEALLRLLRLARIGCGEIFAAQDRA 235
>gi|297180954|gb|ADI17157.1| polyribonucleotide nucleotidyltransferase (polynucleotide
phosphorylase) [uncultured gamma proteobacterium
HF0070_08D07]
Length = 695
Score = 155 bits (391), Expect = 5e-36, Method: Composition-based stats.
Identities = 44/243 (18%), Positives = 87/243 (35%), Gaps = 18/243 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +R I + V GS L G+T L ATL + + + T
Sbjct: 314 RIDGRDLKTVRAIEVEVGVLPKTHGSALFTRGETQALVVATLGTLRDAAIIDALEGTYKD 373
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G R+ G + R + +V+ + + +
Sbjct: 374 QFMLHYNFPPYSVGETGMMGGPKRREVGHGKL----ARRGVSAVLPDPDEFPYTLRVVSE 429
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ G +AL D + + V +G+ A+ +
Sbjct: 430 ITESNGSSSMASVCGTSLALMDAGVPLAAPVAGVAMGLVKEGNRYAVLTD---------I 480
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D + G + +Q + + +++ L+ A + +++ V
Sbjct: 481 LGDEDHLGDMDFKVAGSSKG-VTALQMDIKISGITEEIMEVALSQAYEARLHILEQMNKV 539
Query: 238 ISN 240
IS
Sbjct: 540 ISQ 542
Score = 107 bits (266), Expect = 2e-21, Method: Composition-based stats.
Identities = 38/229 (16%), Positives = 73/229 (31%), Gaps = 27/229 (11%)
Query: 13 EISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----HGWITAEYGMLP 67
E+ + ++K G+ LV G T ++TT + + G +P
Sbjct: 14 EVVIETNKIAKQTSGTALVSIGGTVVMTTVVGAKSARPGQDFFPLTVNYQEKAYAAGKIP 73
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R GR + R+I R +R + S + Q++ D
Sbjct: 74 GGFFRR------EGRPSEKETLTSRLIDRPIRPLFPKSFMNEVQVVCTVLSTDKDQDPDI 127
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
AA+ G A +G + A G G +++ Y D+
Sbjct: 128 AAMIGTSAA-------------LAISGLPFEGPIGAARVGYKDGAYLLNPGYEALKDGDL 174
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ T+ ++ V+ A+ S+D + + +I K+
Sbjct: 175 NMMVAGTEE-AVLMVESEAKE--LSEDQMLGAVLYGHQEMQVVISSIKE 220
>gi|298253316|ref|ZP_06977108.1| ribonuclease PH [Gardnerella vaginalis 5-1]
gi|297532711|gb|EFH71597.1| ribonuclease PH [Gardnerella vaginalis 5-1]
Length = 247
Score = 155 bits (391), Expect = 5e-36, Method: Composition-based stats.
Identities = 105/229 (45%), Positives = 151/229 (65%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+R+ GR +++R + +TR+ + EGS L++ G+T ++ TAT VP W R++ GW+T
Sbjct: 8 IRVDGRDVDELRPVHITRKFTDVPEGSVLIECGNTRVMCTATFTVGVPRWRRDSGLGWVT 67
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEY MLPR+T R RE+V G+ GGR+ EI R+IGR LR VVD+ A+G QI IDCDV+Q
Sbjct: 68 AEYSMLPRATAERTDRESVRGKIGGRTHEISRLIGRCLRGVVDMKAMGECQIQIDCDVLQ 127
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA++TGA+VAL D L E + + V+K ++A+S G++ G P++DL Y
Sbjct: 128 ADGGTRTASVTGAYVALVDALHWAEKNGHIRSAANVIKDSISAVSVGVINGTPMLDLPYV 187
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIAD 229
EDS D N MT SG +E+QG+AE F++D +L+LA +
Sbjct: 188 EDSQAMTDMNVAMTGSGTFIEIQGTAEHRPFNRDELNTLLDLATKGNHE 236
>gi|302380540|ref|ZP_07269005.1| polyribonucleotide nucleotidyltransferase [Finegoldia magna
ACS-171-V-Col3]
gi|302311483|gb|EFK93499.1| polyribonucleotide nucleotidyltransferase [Finegoldia magna
ACS-171-V-Col3]
Length = 714
Score = 155 bits (391), Expect = 5e-36, Method: Composition-based stats.
Identities = 48/244 (19%), Positives = 92/244 (37%), Gaps = 18/244 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
+R R+ +Q+REI+ + GS L K G T +L+ TL + +V + + +
Sbjct: 312 IRPDNRKLDQIREITCDVDILPRPHGSGLFKRGQTQVLSVTTLGTPSDAQVLDGLIDQED 371
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
+Y P S G+ + R+ G RAL V+ I +
Sbjct: 372 KRYMHQYNFPPYSVGDARPLRSPGRREIGHGAL----AERALLPVIPSEEEFPYTIRVVS 427
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V+ ++G + A++ G+ ++L D +++ + + I
Sbjct: 428 EVLSSNGSSSQASVCGSTLSLLDAGVPIKEPVAGIAMGLIKADDNVVILSD--------- 478
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T G I +Q + S++ L A+ ++ L +
Sbjct: 479 IQGLEDHLGDMDFKVAGTKDG-ITALQMDIKITGISEEILTEALERARVGRLHILSLMNE 537
Query: 237 VISN 240
IS
Sbjct: 538 CISE 541
Score = 100 bits (248), Expect = 2e-19, Method: Composition-based stats.
Identities = 44/234 (18%), Positives = 82/234 (35%), Gaps = 31/234 (13%)
Query: 13 EISLTRR-VSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKHGWITAEYGMLP 67
+I +T V++ A G+CL++ G+T LL TA E V + G +P
Sbjct: 13 KIEVTIGKVAEQANGACLIQSGETVLLVTAVGSKEPREGVDFFPLTCDFEEKLYSVGKIP 72
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R GR ++ R+I R LR + Q+I + D
Sbjct: 73 GGFIKR------EGRPSEKATLTARLIDRPLRPLFPEGYHNDVQVIATALSVDQDNTPDI 126
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
A+ G+ +A G +++ GM+ G I++ + D+
Sbjct: 127 LAMIGSSIA-------------LSISDIPFLGPTGSVAVGMIDGEFIINPTKEQREKSDL 173
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK----LQKDV 237
+ T I+ V+ ++ + A + I + + +QK+
Sbjct: 174 ELTVAGTKD-AIMMVEAGCNN--ITEQQVLKAILRAHEEIKKICEFIESIQKEC 224
>gi|148251685|ref|YP_001236270.1| polynucleotide phosphorylase/polyadenylase [Bradyrhizobium sp.
BTAi1]
gi|187470940|sp|A5E870|PNP_BRASB RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|146403858|gb|ABQ32364.1| Polyribonucleotide nucleotidyltransferase [Bradyrhizobium sp.
BTAi1]
Length = 720
Score = 155 bits (391), Expect = 5e-36, Method: Composition-based stats.
Identities = 47/241 (19%), Positives = 87/241 (36%), Gaps = 18/241 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +R I V A GS L G+T L TL +E+ + T
Sbjct: 316 RIDGRDVKTVRNIVCEVGVLPRAHGSALFTRGETQALVVTTLGTGEDEQYIDALSGTYKE 375
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + R+ G + RA+ V+ + +
Sbjct: 376 TFLLHYNFPPYSVGETGRLGGTKRREIGHGKL----AWRAIHPVLPPHHEFPYTTRVVSE 431
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
V +++G + A + G+ +AL D ++ + + +L+G A+ +
Sbjct: 432 VTESNGSSSMATVCGSSLALMDAGVPLKRPTAGIAMGLILEGSRYAVLSD---------I 482
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T+SG I +Q + +++ L A++ ++
Sbjct: 483 LGDEDHLGDMDFKVAGTESG-ITSLQMDIKIEGITEEIMRVALGQAREGRIHILGEMSKA 541
Query: 238 I 238
+
Sbjct: 542 L 542
Score = 109 bits (272), Expect = 3e-22, Method: Composition-based stats.
Identities = 36/235 (15%), Positives = 75/235 (31%), Gaps = 28/235 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKHGWITAEYGML 66
R + L +++ A+G+ + +G+T +L T E V + G +
Sbjct: 14 RPLKLETGKIARQADGAVVATYGETVVLATVVAAKSPREGVDFLPLTVDYQEKAYAAGRI 73
Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
P R GR + + R+I R +R + + Q+I+ +
Sbjct: 74 PGGYFKR------EGRPTEKETLVSRLIDRPIRPLFVDAWRNETQVIVTTLSHDMENDPD 127
Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
A+ A A KG + A G I++ E +
Sbjct: 128 ILAMVAASAA-------------LTLSGVPFKGPIGAARVGFANDEYILNPTLDEMTDTQ 174
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
+D T ++ V+ A+ ++D + +I + ++ +
Sbjct: 175 LDLVVAGTSD-AVLMVESEAKE--LNEDIMLGAVMFGHRHFQPVINAIIE-LAEK 225
>gi|313884899|ref|ZP_07818651.1| polyribonucleotide nucleotidyltransferase [Eremococcus coleocola
ACS-139-V-Col8]
gi|312619590|gb|EFR31027.1| polyribonucleotide nucleotidyltransferase [Eremococcus coleocola
ACS-139-V-Col8]
Length = 698
Score = 155 bits (391), Expect = 5e-36, Method: Composition-based stats.
Identities = 47/243 (19%), Positives = 89/243 (36%), Gaps = 17/243 (6%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
+R GR+ +++R +S + GS L G T L+ ATL E ++ + +
Sbjct: 317 VRPDGRKIDEIRPLSSEVGLLPRVHGSGLFTRGQTQALSVATLAPLREHQIIDGLGTEDY 376
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P S G + + R+ G RAL+ V+ I +
Sbjct: 377 KRFMHHYNFPPYSVGETGRMGSPGRREVGHGALG----ERALKHVIPSEEEFPYVIRLVS 432
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V++++G + A+I G+ +A+ D ++ + V+ + D
Sbjct: 433 EVLESNGSSSQASICGSTLAMMDAGIPIKAPVAGIAMGLVMDDDA--------DYTILTD 484
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T G I +Q + ++ L AK ++
Sbjct: 485 IQGLEDHLGDMDFKVAGTAKG-ITALQMDIKIQGITEQILREALAQAKVARMQILDQITS 543
Query: 237 VIS 239
I+
Sbjct: 544 TIA 546
Score = 115 bits (288), Expect = 4e-24, Method: Composition-based stats.
Identities = 47/232 (20%), Positives = 85/232 (36%), Gaps = 26/232 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKV---PMWIRNTKHGWITAEYGMLP 67
R + + V+K A G+ LV++G+T +L TA +K + + G +P
Sbjct: 13 RPLQVEIGQVAKQASGAVLVRYGETVVLATAVGSKKAGTGDFFPLTVNYEEKMYAVGKVP 72
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R GR + R+I R +R + QI+ + D
Sbjct: 73 GGFLKR------EGRPSEHATLTARLIDRPIRPMFPDGVRNEVQIVATVLSVDQDNSPEM 126
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
AA+ GA +A G +A + + G I++ + +T ++
Sbjct: 127 AAMFGASLA-------------LGVSDVPFDGPIAGVKVARVDGQLIINPSVDQLATTEI 173
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
D T + I V+ A A + L + I +L+ Q+++IS
Sbjct: 174 DLTVAGTKT-AINMVESDA--AEVPEAEMLEALLFGHEAIKELVAFQEEIIS 222
>gi|288940255|ref|YP_003442495.1| polyribonucleotide nucleotidyltransferase [Allochromatium vinosum
DSM 180]
gi|288895627|gb|ADC61463.1| polyribonucleotide nucleotidyltransferase [Allochromatium vinosum
DSM 180]
Length = 699
Score = 155 bits (391), Expect = 5e-36, Method: Composition-based stats.
Identities = 41/244 (16%), Positives = 88/244 (36%), Gaps = 18/244 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +R I++ V GS L G+T + TL + ++ + +
Sbjct: 318 RIDGRDTKTVRPITIRTGVLPRTHGSALFTRGETQAMVITTLGTERDSQIIDALEGERRE 377
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P G + + R+ G + R + +V+ + + +
Sbjct: 378 HFMLHYNFPPFCVGEIGRVGSPKRREIGHGRL----AKRGVLAVMPSIEEFPYSVRVVSE 433
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ G +AL D ++ + + +G A+ ++
Sbjct: 434 ITESNGSSSMASVCGTSLALMDAGVPIKAPVAGVAMGLIKEGERFAVLTDIM-------- 485
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T G I +Q + +++ L AK+ ++ V
Sbjct: 486 -GDEDHLGDMDFKVAGTADG-INALQMDIKIEGITREIMEIALAQAKEGRLHILGEMNKV 543
Query: 238 ISNE 241
I +
Sbjct: 544 IDSH 547
Score = 66.8 bits (161), Expect = 2e-09, Method: Composition-based stats.
Identities = 33/243 (13%), Positives = 69/243 (28%), Gaps = 48/243 (19%)
Query: 14 ISLTRR-VSKYAEGSCLVKF---------------GDTHLLTTATLEEKVPMWIRNTKHG 57
+ L +++ A+G+ LV G + ++
Sbjct: 17 VRLETGEIARQADGAVLVNMDDTVVLVTVVVDKRPG-----------AERDFLPLTVEYQ 65
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
T G +P R GR R+I R +R + QII
Sbjct: 66 EKTYAAGRIPGGFFRR------EGRPSEGEILTARLIDRPIRPLFVEGFCNEVQIIATVK 119
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ A+ GA + G +AA G G I++
Sbjct: 120 SLNPAVNPEVPALIGA-------------SAALALSGAPFNGPIAAARVGYKNGEYILNP 166
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
+ V ++ V+ +E S++ + +++ +I+ +++
Sbjct: 167 ALTGLNPDSDLDLVVAGTDKAVLMVE--SEARGLSEEIMLGAVLFGHEQMQVVIQAIREL 224
Query: 238 ISN 240
+
Sbjct: 225 AAE 227
>gi|148270567|ref|YP_001245027.1| polynucleotide phosphorylase/polyadenylase [Thermotoga petrophila
RKU-1]
gi|187611330|sp|A5IMM8|PNP_THEP1 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|147736111|gb|ABQ47451.1| Polyribonucleotide nucleotidyltransferase [Thermotoga petrophila
RKU-1]
Length = 708
Score = 155 bits (391), Expect = 5e-36, Method: Composition-based stats.
Identities = 45/243 (18%), Positives = 86/243 (35%), Gaps = 18/243 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
+R GR+ ++R IS + GS L G+T L TL + ++ +
Sbjct: 316 IRADGRKPTEIRPISCEVGLFPRTHGSALFTRGETQSLGIVTLGAPMDVQIIDTLLEEGV 375
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P TG S R+ G RAL++++ I +
Sbjct: 376 KRFMLHYNFPPFCTGEVKPLRGPSRREIGHGHL----AERALKNMLPPEEEFPYTIRVVS 431
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
++++++G + A + +AL D ++ + +L+ + D
Sbjct: 432 EILESNGSSSMATVCSGSLALMDAGVPIKKHVAGIAMGLILEEDA---------EIILTD 482
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T G I Q + + S + L A++ ++ +
Sbjct: 483 IIGMEDHYGDMDFKVAGTRDG-ITAFQMDCKVSGVSDELLMKALMQAREARMYILDRMYE 541
Query: 237 VIS 239
IS
Sbjct: 542 TIS 544
Score = 108 bits (268), Expect = 1e-21, Method: Composition-based stats.
Identities = 49/234 (20%), Positives = 83/234 (35%), Gaps = 27/234 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----HGWITAEYGML 66
RE+ + V+K + GS LV+FGDT +L TA + +K I G +
Sbjct: 11 RELVVQYGKVAKQSSGSALVRFGDTVVLATANISDKAVEGIDFVPLTVEFQERFYAAGKI 70
Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
P R G+ + R+I R +R + Q+I+ + +
Sbjct: 71 PGGFIKR------EGKPSESAILSARLIDRPIRPLFPKKLRNEVQVIVTVLSVDPNVPPD 124
Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
I A +AL+ +G VA I G G I +
Sbjct: 125 VVGIFAASLALN-------------VSKIPFEGIVAGIRVGYRDGQFIALPSEEDIEKGL 171
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
+D T + V+G A+ ++ L A I +L+ Q++++S
Sbjct: 172 MDITVAGTKD-AVTMVEGEAKEVA--EEDMVKALRFAHSVIKELVDFQEEILSE 222
>gi|15644097|ref|NP_229146.1| polynucleotide phosphorylase/polyadenylase [Thermotoga maritima
MSB8]
gi|170289273|ref|YP_001739511.1| polyribonucleotide nucleotidyltransferase [Thermotoga sp. RQ2]
gi|81553535|sp|Q9X166|PNP_THEMA RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|226704827|sp|B1LBY0|PNP_THESQ RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|4981905|gb|AAD36416.1|AE001789_1 polynucleotide phosphorylase [Thermotoga maritima MSB8]
gi|170176776|gb|ACB09828.1| Polyribonucleotide nucleotidyltransferase [Thermotoga sp. RQ2]
Length = 708
Score = 155 bits (391), Expect = 5e-36, Method: Composition-based stats.
Identities = 45/243 (18%), Positives = 86/243 (35%), Gaps = 18/243 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
+R GR+ ++R IS + GS L G+T L TL + ++ +
Sbjct: 316 IRADGRKPTEIRPISCEVGLFPRTHGSALFTRGETQSLGIVTLGAPMDVQIIDTLLEEGV 375
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P TG S R+ G RAL++++ I +
Sbjct: 376 KRFMLHYNFPPFCTGEVKPLRGPSRREIGHGHL----AERALKNMLPPEEEFPYTIRVVS 431
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
++++++G + A + +AL D ++ + +L+ + D
Sbjct: 432 EILESNGSSSMATVCSGSLALMDAGVPIKKHVAGIAMGLILEEDA---------EIILTD 482
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T G I Q + + S + L A++ ++ +
Sbjct: 483 IIGMEDHYGDMDFKVAGTRDG-ITAFQMDCKVSGVSDELLMKALMQAREARMYILDRMYE 541
Query: 237 VIS 239
IS
Sbjct: 542 TIS 544
Score = 109 bits (273), Expect = 3e-22, Method: Composition-based stats.
Identities = 49/234 (20%), Positives = 84/234 (35%), Gaps = 27/234 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----HGWITAEYGML 66
RE+ + V+K + GS LV+FGDT +L TA + +K I G +
Sbjct: 11 RELVVQYGKVAKQSSGSALVRFGDTVVLATANISDKAVEGIDFVPLTVEFQERFYAAGKI 70
Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
P R G+ + R+I R +R + Q+I+ + +
Sbjct: 71 PGGFIKR------EGKPSESAILSARLIDRPIRPLFPKKLRNEVQVIVTVLSVDPNVPPD 124
Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
I A +AL+ +G VA I G G I +
Sbjct: 125 VVGIFAASLALN-------------VSKIPFEGIVAGIRVGYRDGQFIALPSEEDIEKGL 171
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
+D T + V+G A+ +++ L A I +L+ Q++++S
Sbjct: 172 MDITVAGTKD-AVTMVEGEAKE--VTEEDMVKALRFAHSVIKELVDFQEEILSE 222
>gi|237743308|ref|ZP_04573789.1| polyribonucleotide nucleotidyltransferase [Fusobacterium sp. 7_1]
gi|229433087|gb|EEO43299.1| polyribonucleotide nucleotidyltransferase [Fusobacterium sp. 7_1]
Length = 703
Score = 155 bits (391), Expect = 5e-36, Method: Composition-based stats.
Identities = 47/243 (19%), Positives = 91/243 (37%), Gaps = 18/243 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR ++R + V GS L G+T L TL +E++ + +
Sbjct: 328 RVDGRTTTEIRPLDAQINVLPIPHGSALFTRGETQSLAITTLGTKEDEQLIDDLEKEYYK 387
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + + R+ G RALR V+ I + +
Sbjct: 388 KFYLHYNFPPYSVGEVGRMSSPGRRELGHGSL----AERALRYVIPTEEEFPYTIRVVSE 443
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A+I G ++L +++ + + +G + ++
Sbjct: 444 ITESNGSSSQASICGGSLSLMAAGVPIKEHVAGIAMGLIKEGEEFTVLTDIM-------- 495
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T SG I +Q + +++ LN A ++++L +
Sbjct: 496 -GLEDHLGDMDFKVAGTKSG-ITALQMDIKITGITEEIMRIALNQAHQARLEILELMNNT 553
Query: 238 ISN 240
IS
Sbjct: 554 ISK 556
Score = 100 bits (248), Expect = 2e-19, Method: Composition-based stats.
Identities = 38/230 (16%), Positives = 79/230 (34%), Gaps = 27/230 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGML 66
R + ++ +S+ + G+ ++++GDT LL+TA + + + G
Sbjct: 18 RTLKVSTGKISRQSSGAIVIQYGDTVLLSTANRSKDARKGADFFPLTVDYIEKFYSTGKF 77
Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
P R GR + + R+I R +R + I+
Sbjct: 78 PGGFNKR------EGRPSTNATLVARLIDRPIRPMFPDGFNYDVHIVNTVLSYDEINTPD 131
Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
I G+ +AL G VA ++ G G I++ E +
Sbjct: 132 YLGIIGSSLALM-------------ISDIPFLGPVAGVTVGYKNGEFILNPSPKELEESE 178
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+D + T + V+ A+ ++ + A + I + + Q++
Sbjct: 179 LDLSVAGTKE-AVNMVEAGAKE--LDEETMLKAIMFAHENIKKICEFQEE 225
>gi|187471092|sp|Q2IQ01|PNP_ANADE RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
Length = 721
Score = 155 bits (391), Expect = 5e-36, Method: Composition-based stats.
Identities = 45/242 (18%), Positives = 88/242 (36%), Gaps = 18/242 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +R+I+ + GS L G+T L TL +E+ +
Sbjct: 324 RIGGRGMADIRKITCEVGLLPRVHGSSLFTRGETQALVATTLGTAEDEQRVEMLTGMVFK 383
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + R+ G RALR+V+ + + D
Sbjct: 384 KFMLHYNFPPFSVGEVKFLRSPGRREIGHGAL----AERALRAVMPPEDQFPYTVRVVSD 439
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+++++G + A++ G ++L D ++ + + +G AI +
Sbjct: 440 IMESNGSSSMASVCGGCLSLMDAGVPIKAPVAGIAMGLIKEGEKIAILSD---------I 490
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T +G I +Q + +++ L+ A + ++
Sbjct: 491 LGDEDHLGDMDFKVCGTAAG-ITSIQMDIKIGGVTREILEQALSQAAEGRKHILGEMAKA 549
Query: 238 IS 239
+S
Sbjct: 550 LS 551
Score = 97.2 bits (240), Expect = 2e-18, Method: Composition-based stats.
Identities = 47/229 (20%), Positives = 79/229 (34%), Gaps = 27/229 (11%)
Query: 13 EISLTRR-VSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKHGWITAEYGMLP 67
E+ L V+K A GS V+ GD+ +L TA E + + + G +P
Sbjct: 14 EVLLETGKVAKQAHGSVWVRLGDSIVLVTAVSAAEKKEGIDFFPLTVDYQEKLFAAGRVP 73
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
S R GR + R++ R+ R + Q+I + T
Sbjct: 74 GSFFRR------EGRPTEKETLTSRLVDRSCRPLFAEGYSNETQVIATVISFDQENDTDV 127
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
A+TGA ALH G +A + + G + + + + D+
Sbjct: 128 LALTGASAALH-------------ISDIPFGGPIAGVRVARVGGQLVANPTLAQRADADL 174
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
D + IV V+G A+ S+ L + + L+ Q
Sbjct: 175 D-VVMAASRDAIVMVEGGAQE--VSEAVMIEALLFGQAAVQPLLDAQDA 220
>gi|328953246|ref|YP_004370580.1| Ribonuclease PH [Desulfobacca acetoxidans DSM 11109]
gi|328453570|gb|AEB09399.1| Ribonuclease PH [Desulfobacca acetoxidans DSM 11109]
Length = 255
Score = 155 bits (391), Expect = 5e-36, Method: Composition-based stats.
Identities = 111/239 (46%), Positives = 157/239 (65%), Gaps = 2/239 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+R GR+ +++R++ +T R AEG+ L+ G T ++ TAT+EE+VP +++++ GW+T
Sbjct: 12 IRSEGRRLDELRQVKITPRYLSQAEGAVLISLGRTWVICTATVEERVPAFLQDSGQGWVT 71
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEY MLPR+T +R R A G+ RSQEIQR+IGR+LR+VVDL ALG R I++DCDVIQ
Sbjct: 72 AEYDMLPRATHSRHPRSANLGKPSSRSQEIQRLIGRSLRAVVDLDALGERTIVLDCDVIQ 131
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTAAITGA+VAL + L ++ + + VAA+S G+ +VDLDY
Sbjct: 132 ADGGTRTAAITGAFVALCEALAGLQRQE--IIATLPVLDQVAAVSVGLANDQILVDLDYQ 189
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
EDS +VDANFV+T G +VEVQ + ER F ML A+ + L + Q+ +
Sbjct: 190 EDSRAEVDANFVVTGRGQLVEVQATGERGPFRPALLLEMLERAQPALQRLRQAQEKALR 248
>gi|312879870|ref|ZP_07739670.1| polyribonucleotide nucleotidyltransferase [Aminomonas paucivorans
DSM 12260]
gi|310783161|gb|EFQ23559.1| polyribonucleotide nucleotidyltransferase [Aminomonas paucivorans
DSM 12260]
Length = 756
Score = 155 bits (391), Expect = 5e-36, Method: Composition-based stats.
Identities = 42/243 (17%), Positives = 88/243 (36%), Gaps = 20/243 (8%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL-----EEKVPMWIR-NTK 55
R GR+ +++R I + A GS L G+T L TL ++++ ++ +
Sbjct: 312 RADGRKMDELRPICCETGLLPKAHGSALFTRGETQSLAVTTLGMVGEDDQILDGLKHDEP 371
Query: 56 HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115
Y P S G R+ G RALR + A + +
Sbjct: 372 SKRFLLHYNFPPYSVGEVRPMRGPGRREIGHGAL----AERALRPMFPDEAAFPYVVRVV 427
Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIV 175
D+++++G + A++ G +++ D ++ + V G +
Sbjct: 428 SDILESNGSSSMASVCGGSLSMMDAGVPLKKAVAGVAMGLVTDGSRV---------RILT 478
Query: 176 DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
D+ ED D+D T G + +Q + ++ L+ A++ ++ +
Sbjct: 479 DIQGLEDHYGDMDFKVTGTRDG-VTALQMDNKAGGITRAILEQALSQAREGRMKILDIMD 537
Query: 236 DVI 238
+
Sbjct: 538 GAL 540
Score = 92.6 bits (228), Expect = 4e-17, Method: Composition-based stats.
Identities = 42/230 (18%), Positives = 75/230 (32%), Gaps = 27/230 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT----KHGWITAEYGML 66
R +S ++K A S ++G+T +L T+ L EK + + G +
Sbjct: 12 RTLSFETGKMAKQANASVFARYGETVILVTSVLAEKAREGLDFFPLLVDYEERFYSAGKI 71
Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
P R GR + RM+ R++RS+ ++ +
Sbjct: 72 PGGFIKR------EGRPSETAILSGRMVDRSIRSLFPDYLRNDVHVVATVLSVDQQNAPN 125
Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
AI A + +G + A+ G L G +V+ E
Sbjct: 126 VLAINAA-------------SAALALSDIPWEGPIGAVRIGCLDGNLVVNPTEQEIPLST 172
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+D + G I V+ A+ S+ L LA I ++ +
Sbjct: 173 LDLLVAGHE-GGITMVEAGAQE--VSEALLVDALELAHREIRRIVAFILE 219
>gi|89895255|ref|YP_518742.1| polynucleotide phosphorylase/polyadenylase [Desulfitobacterium
hafniense Y51]
gi|122482382|sp|Q24UJ4|PNP_DESHY RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|89334703|dbj|BAE84298.1| hypothetical protein [Desulfitobacterium hafniense Y51]
Length = 727
Score = 155 bits (391), Expect = 5e-36, Method: Composition-based stats.
Identities = 47/244 (19%), Positives = 90/244 (36%), Gaps = 18/244 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56
+R GR +++R IS+ + G+ L G T +LT AT +E++ + +
Sbjct: 319 IRPDGRALDEIRPISVEVGILPRTHGTGLFTRGQTQVLTVATLGAVGDEQILDGLGLEES 378
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P S G R+ G RAL V+ I +
Sbjct: 379 KRYMHHYNFPPYSVGETRPMRGPGRREIGHGAL----AERALLPVIPDENDFPYTIRLVS 434
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V++++G + A++ G+ ++L D ++ + + + + AI
Sbjct: 435 EVLESNGSSSMASVCGSTLSLMDAGVPVKSPVAGIAMGLISEENHIAILSD--------- 485
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T G + +Q + S++ L AK+ ++
Sbjct: 486 IQGMEDHDGDMDFKVAGTSQG-VTALQMDIKIKGVSREILERALTQAKEGRLFILDKMLS 544
Query: 237 VISN 240
VI
Sbjct: 545 VIEK 548
Score = 92.6 bits (228), Expect = 4e-17, Method: Composition-based stats.
Identities = 34/240 (14%), Positives = 76/240 (31%), Gaps = 31/240 (12%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKHGWITAEYGML 66
R ++ + K A G+ ++GDT + AT E + + + G +
Sbjct: 15 RTMTFQTGKIGKQAGGAIFCRYGDTVVSAFATGSAQPREGIDFFPLTVEFEERLYAAGKI 74
Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
P R GR ++ R+I R +R + Q++ + D +
Sbjct: 75 PGGFIKR------EGRPSEKAILSARLIDRPIRPLFPEGYRNDVQVVAQVMSVDQDCASD 128
Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
I A A + +G VAA++ G++ I++ +
Sbjct: 129 ITGINAASAA-------------LTISNVPFEGPVAAVTVGLIGDEFIINPTVEQSEKSV 175
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK----DVISNEV 242
+ T ++ V+ A+ + + I + + + + + +
Sbjct: 176 MHLTVAGTKD-AVMMVEAGAQEVP--EAQMLEAIMFGHREIQRIAEFIENYRLEALERNL 232
>gi|124515695|gb|EAY57204.1| Polyribonucleotide nucleotidyltransferase [Leptospirillum rubarum]
Length = 713
Score = 155 bits (391), Expect = 5e-36, Method: Composition-based stats.
Identities = 47/242 (19%), Positives = 89/242 (36%), Gaps = 18/242 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
+R GR + +R I++ + GS L G+T L+ ATL +E+ +
Sbjct: 319 VRADGRGLSDIRPITIEVGILPRTHGSALFTRGETQSLSVATLGTSDDEQRIDALEGEST 378
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P S G R+ G RAL+ V+ I +
Sbjct: 379 KRFMLHYNFPPFSVGETKPMRGPGRREIGHGNL----AERALKPVLPARDSFPYSIRLVS 434
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
D+++++G + A + G +A+ D ++ + + +G AI
Sbjct: 435 DILESNGSSSMATVCGGSLAMMDAGIPIKSAVAGIAMGLIKEGDRIAILSD--------- 485
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T++G I VQ + + + L A++ +++ K
Sbjct: 486 ILGLEDHLGDMDFKVTGTENG-ITAVQMDIKITGITVELMRESLQKAREGRLYIMEKMKM 544
Query: 237 VI 238
+
Sbjct: 545 AL 546
Score = 99.5 bits (246), Expect = 4e-19, Method: Composition-based stats.
Identities = 48/228 (21%), Positives = 79/228 (34%), Gaps = 27/228 (11%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEE----KVPMWIRNTKHGWITAEYGMLPR 68
+ L ++K A+GS +V T ++ TA + V + G +P
Sbjct: 15 VRLETGRMAKQADGSVVVWADGTVVIATAVASKVSKPGVDFLPLTVDYQERAYAAGKIPG 74
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
R G+ R R+I R LR + Q+I I G +
Sbjct: 75 GFFKR------EGKPSEREILNSRLIDRPLRPLFPEGFFFDTQLIASVISIDRGGISDVM 128
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+ + AL+ VAA+ G + G IV+ E +D
Sbjct: 129 AVVASSAALY-------------VSDIPFMNPVAAVKVGCVDGTFIVNPTLDEQERSTLD 175
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
T I+ V+G S++ F + ++LA I LI+ Q+
Sbjct: 176 LVVAGTRD-AIMMVEGQGNE--ISEETFLSAIDLAHKSILPLIEAQEK 220
>gi|210632429|ref|ZP_03297357.1| hypothetical protein COLSTE_01253 [Collinsella stercoris DSM 13279]
gi|210159524|gb|EEA90495.1| hypothetical protein COLSTE_01253 [Collinsella stercoris DSM 13279]
Length = 244
Score = 155 bits (391), Expect = 5e-36, Method: Composition-based stats.
Identities = 117/232 (50%), Positives = 156/232 (67%), Gaps = 4/232 (1%)
Query: 6 RQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGM 65
R + MR ++LTR V K A GSCLV+FGDT +L AT+EE VP W + ++ GW+TAEY M
Sbjct: 12 RAADAMRPVNLTRDVMKNALGSCLVEFGDTKVLCAATIEEGVPGWRKASRQGWVTAEYAM 71
Query: 66 LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125
LP ST R +RE + + GRS EI+R+IGR+LR+VV++ ALG + +DCDVIQADGGT
Sbjct: 72 LPASTNRRTRRETSNRK--GRSMEIERLIGRSLRTVVNMKALGEHTVTVDCDVIQADGGT 129
Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185
RTA+ITGAWVALHD L + L G VAA+S G++ G ++DLDY EDS
Sbjct: 130 RTASITGAWVALHDALMAWVEA--GKISRLPLTGQVAAVSMGLVDGCELLDLDYAEDSHA 187
Query: 186 DVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
+VD N V TD+G I+E+QG+ E+ F + +L+L + I LI LQ +V
Sbjct: 188 EVDMNLVATDAGEIIEIQGTGEQTPFDRARLNRLLDLGELGIKQLIDLQNEV 239
>gi|93004911|ref|YP_579348.1| polynucleotide phosphorylase/polyadenylase [Psychrobacter
cryohalolentis K5]
gi|123264798|sp|Q1QEN9|PNP_PSYCK RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|92392589|gb|ABE73864.1| Polyribonucleotide nucleotidyltransferase [Psychrobacter
cryohalolentis K5]
Length = 700
Score = 155 bits (391), Expect = 5e-36, Method: Composition-based stats.
Identities = 44/239 (18%), Positives = 86/239 (35%), Gaps = 10/239 (4%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R+ GR +R + + V + GS L G+T L T TL + + ++ G I
Sbjct: 320 RIDGRDLETVRALDVQVGVLPFTHGSALFTRGETQALVTTTLGNTRDVNMIDSLAGTIRD 379
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
+ + V G R R+ R +++++ S I + ++ ++
Sbjct: 380 HFMLHYNFPHFSVGETGREGIPKRREIGHGRLARRGVQAMLPDSDRFPYVIRVVSEITES 439
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
+G + A++ GA +AL D ++ + V +G A+ + E
Sbjct: 440 NGSSSMASVCGASLALMDAGVPIKAPVAGIAMGLVKEGERFAVLSD---------ILGDE 490
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
D D+D + G I +Q + + D L A ++ V+
Sbjct: 491 DHLGDMDFKVAGSKDG-ITALQMDIKIEGITPDIMEQALKQAHAGRIHILDAMNKVLPE 548
Score = 79.1 bits (193), Expect = 4e-13, Method: Composition-based stats.
Identities = 42/224 (18%), Positives = 72/224 (32%), Gaps = 28/224 (12%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGMLPR 68
+ + +++ A S LV G +L A + +E + + G +P
Sbjct: 18 VVIETGRIARQAN-SILVHMGGVTVLVAAVVKSDAKEGQNFFPLTVNYQEKMYAAGKIPG 76
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
+ G R GR R+I R +R + + QI A
Sbjct: 77 AYGKR------EGRASESETLTSRLIDRPIRPLFPEGYVNEIQITATVVSSDKTQSADIA 130
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+ GA A G VAA G + G +++ E D+D
Sbjct: 131 ALIGASAA-------------LAISDAPFNGPVAAARVGFINGEYVLNPTLEELKESDLD 177
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
T S ++ V+ +E A S+D + + +I
Sbjct: 178 LVVAGTKS-AVLMVE--SEAAELSEDQMLGAVLYGHQQQQIVID 218
>gi|77165581|ref|YP_344106.1| polynucleotide phosphorylase/polyadenylase [Nitrosococcus oceani
ATCC 19707]
gi|254433639|ref|ZP_05047147.1| 3' exoribonuclease family, domain 2 [Nitrosococcus oceani AFC27]
gi|123593842|sp|Q3J9C0|PNP_NITOC RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|76883895|gb|ABA58576.1| Polyribonucleotide nucleotidyltransferase [Nitrosococcus oceani
ATCC 19707]
gi|207089972|gb|EDZ67243.1| 3' exoribonuclease family, domain 2 [Nitrosococcus oceani AFC27]
Length = 695
Score = 155 bits (391), Expect = 5e-36, Method: Composition-based stats.
Identities = 43/242 (17%), Positives = 89/242 (36%), Gaps = 18/242 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +R I+++ + GS L G+T L TL + +V I +
Sbjct: 315 RIDGRDATAIRPINISTGLLPRTHGSALFTRGETQSLVATTLGTERDAQVIDAIEGERRE 374
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P G + R+ G + R+L VV I + +
Sbjct: 375 RFMLHYNFPPYCVGETGFVGSPKRREIGHGRL----AKRSLNGVVPDEESFPYVIRVVSE 430
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A + G ++L D ++ + + + A+ +
Sbjct: 431 ITESNGSSSMATVCGTSLSLMDAGVPIKAPVAGIAMGLIKEKDRFAVLSD---------I 481
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T+ G I +Q + +++ L+ A++ +++ ++
Sbjct: 482 LGDEDHLGDMDFKVAGTEKG-ITALQMDIKIDGITEEIMRTALSQAREGRFYILQKMNEI 540
Query: 238 IS 239
IS
Sbjct: 541 IS 542
Score = 108 bits (270), Expect = 6e-22, Method: Composition-based stats.
Identities = 38/235 (16%), Positives = 83/235 (35%), Gaps = 28/235 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGML 66
R + L +++ A G+ +V++G+T +L T E + + T G +
Sbjct: 13 RSLVLETGCIARQASGAVVVRYGETVVLVTVVGMKEAAEGRDFFPLTVNYQERTYAAGKI 72
Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
P R GR + R+I R LR + + + Q+I ++
Sbjct: 73 PGGFFKR------EGRPTEKETLTSRLIDRPLRPLFPKNFINEVQVIATVISSDSENDPD 126
Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
++ GA A +AA G + G +++ G+
Sbjct: 127 IPSLIGASAA-------------LALSGIPFTTPIAAARVGYIDGQYVLNPTLGQMEKSA 173
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
+D T+ ++ V+ A+ ++ + A + +I+ ++ ++ E
Sbjct: 174 LDLVVAGTEK-AVLMVESEAQE--LPEEIMLGSVMFAHQEMQVVIQAIRE-LAEE 224
>gi|118579404|ref|YP_900654.1| polynucleotide phosphorylase/polyadenylase [Pelobacter propionicus
DSM 2379]
gi|187610304|sp|A1AMM6|PNP_PELPD RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|118502114|gb|ABK98596.1| Polyribonucleotide nucleotidyltransferase [Pelobacter propionicus
DSM 2379]
Length = 706
Score = 155 bits (391), Expect = 5e-36, Method: Composition-based stats.
Identities = 44/243 (18%), Positives = 84/243 (34%), Gaps = 18/243 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
+R+ GR +R I+ + GS L G+T L TL +E+ +
Sbjct: 311 VRIDGRDTVTIRPIATEAGLLPRTHGSALFTRGETQALVVTTLGTSSDEQRMDSLYGEYR 370
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P S G R R+ G RAL +++ I I
Sbjct: 371 KRFLLHYNFPPFSVGETSFRLGPGRREIGHGML----AERALSAILPKHDDFPYTIRIVS 426
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+ ++++G + AA+ G ++L D + + + +G AI
Sbjct: 427 ETLESNGSSSMAAVCGGCMSLMDAGVPISAPVAGIAMGLIKEGEKVAILSD--------- 477
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D + G I +Q + +++ L A++ ++ +
Sbjct: 478 ILGDEDHLGDMDFKVAGSSDG-ITALQMDIKIGGVTREIMQKALAQAREGRLHILGKMAE 536
Query: 237 VIS 239
+
Sbjct: 537 TLG 539
Score = 101 bits (251), Expect = 9e-20, Method: Composition-based stats.
Identities = 42/228 (18%), Positives = 79/228 (34%), Gaps = 27/228 (11%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----HGWITAEYGMLPR 68
++++ ++K A G+ +VK GDT +L TA +++ + G +P
Sbjct: 14 VTISTGKMAKQANGAVVVKSGDTMVLVTAVAQKEAKEGQDFFPLTVNYTEKAYAGGKIPG 73
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
S R R R+I R +R + + L QII D R
Sbjct: 74 SFFRR------EARPSDPETLTCRLIDRPIRPLFPENFLNDTQIIATVVSADKDHDPRIL 127
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
++ GA A +G +A + G + G I + E D++
Sbjct: 128 SMLGASAA-------------LEVSDIPFQGPIAGVKVGRVDGRLICNPTADELELSDME 174
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ I+ V+ E S+D + + +++ Q+
Sbjct: 175 IVVAASRD-AIIMVE--GEARFVSEDDMLDAIFFGHAAVQPVLEAQEK 219
>gi|303233686|ref|ZP_07320340.1| polyribonucleotide nucleotidyltransferase [Finegoldia magna
BVS033A4]
gi|302495120|gb|EFL54872.1| polyribonucleotide nucleotidyltransferase [Finegoldia magna
BVS033A4]
Length = 714
Score = 155 bits (391), Expect = 5e-36, Method: Composition-based stats.
Identities = 48/244 (19%), Positives = 92/244 (37%), Gaps = 18/244 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
+R R+ +Q+REI+ + GS L K G T +L+ TL + +V + +
Sbjct: 312 IRPDNRKLDQIREITCDVDILPRPHGSGLFKRGQTQVLSVTTLGTPSDAQVLDGLIEQED 371
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
+Y P S G+ + R+ G RAL V+ I +
Sbjct: 372 KRYMHQYNFPPYSVGDARPLRSPGRREIGHGAL----AERALLPVIPSEEEFPYTIRVVS 427
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V+ ++G + A++ G+ ++L D +++ + + + I
Sbjct: 428 EVLSSNGSSSQASVCGSTLSLLDAGVPIKEPVAGIAMGLIKEDDNVVILSD--------- 478
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T G I +Q + S++ L A+ ++ L +
Sbjct: 479 IQGLEDHLGDMDFKVAGTKDG-ITALQMDIKITGISEEILTEALERARVGRLHILSLMNE 537
Query: 237 VISN 240
IS
Sbjct: 538 CISE 541
Score = 99 bits (247), Expect = 2e-19, Method: Composition-based stats.
Identities = 44/234 (18%), Positives = 82/234 (35%), Gaps = 31/234 (13%)
Query: 13 EISLTRR-VSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKHGWITAEYGMLP 67
+I +T V++ A G+CL++ G+T LL TA E V + G +P
Sbjct: 13 KIEVTIGKVAEQANGACLIQSGETVLLVTAVGSKEPREGVDFFPLTCDFEEKLYSVGKIP 72
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R GR ++ R+I R LR + Q+I + D
Sbjct: 73 GGFIKR------EGRPSEKATLTARLIDRPLRPLFPEGYHNDVQVIATALSVDQDNTPDI 126
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
A+ G+ +A G +++ GM+ G I++ + D+
Sbjct: 127 LAMIGSSIA-------------LSISDIPFLGPTGSVAVGMIDGEFIINPTKEQREKSDL 173
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK----LQKDV 237
+ T I+ V+ ++ + A + I + + +QK+
Sbjct: 174 ELTVAGTKD-AIMMVEAGCNN--ITEQQVLKAILRAHEEIKKICEFIESIQKEC 224
>gi|302336447|ref|YP_003801654.1| RNAse PH [Olsenella uli DSM 7084]
gi|301320287|gb|ADK68774.1| RNAse PH [Olsenella uli DSM 7084]
Length = 267
Score = 155 bits (391), Expect = 5e-36, Method: Composition-based stats.
Identities = 125/236 (52%), Positives = 156/236 (66%), Gaps = 4/236 (1%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R GR +QMR LTR + K A+GSCL +FGDT ++ TAT+EE VP W + ++ GW++A
Sbjct: 31 RSYGRAADQMRPAKLTRDIMKNADGSCLAEFGDTRVICTATVEEGVPAWRKGSRAGWVSA 90
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
EY MLP ST R +RE + GRS EI+R+IGR+LR+VVDL LG +I DCDVIQA
Sbjct: 91 EYAMLPASTSTRSRREYKGRK--GRSMEIERLIGRSLRAVVDLHRLGELTVICDCDVIQA 148
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
DGGTRTA+ITGAWVALHD L D L G VAAIS GM+ G ++DLDY E
Sbjct: 149 DGGTRTASITGAWVALHDALMASVDA--GRLARLPLTGQVAAISMGMVDGSLLLDLDYPE 206
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
DS VD N V TD+G IVEVQG+ ER+T + A+L+L + I L+ LQ V
Sbjct: 207 DSHAQVDMNLVGTDAGGIVEVQGTGERSTIDRAQLNALLDLGQVGIGRLVALQNQV 262
>gi|294101702|ref|YP_003553560.1| polyribonucleotide nucleotidyltransferase [Aminobacterium
colombiense DSM 12261]
gi|293616682|gb|ADE56836.1| polyribonucleotide nucleotidyltransferase [Aminobacterium
colombiense DSM 12261]
Length = 748
Score = 155 bits (391), Expect = 5e-36, Method: Composition-based stats.
Identities = 46/245 (18%), Positives = 88/245 (35%), Gaps = 20/245 (8%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL------EEKVPMWIRNTK 55
R GR +++R I+ V GS L G+T L ATL ++ + ++
Sbjct: 312 RADGRAMDEIRPITCEVGVLPRVHGSALFTRGETQALVVATLGMMGVDDQILDGLKQDEP 371
Query: 56 HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115
+ Y P S G R+ G RALR ++ + +
Sbjct: 372 NKRFILHYNFPPYSVGEVRPMRGPGRREIGHGAL----AERALRPIIPDEVEFPYVVRLV 427
Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIV 175
D+++++G + A+I G +AL + + + + +G I
Sbjct: 428 SDILESNGSSSQASICGGSLALMNSGVPINRHVAGIAMGLIKEGEKVEILSD-------- 479
Query: 176 DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
+ ED D+D T G + +Q + +++ LN AK+ +++ +
Sbjct: 480 -IQGLEDHYGDMDFKVAGTREG-VTALQMDNKAGGITREVLKKALNQAKEGRLFILEKME 537
Query: 236 DVISN 240
I
Sbjct: 538 SAIEE 542
Score = 103 bits (256), Expect = 3e-20, Method: Composition-based stats.
Identities = 44/230 (19%), Positives = 81/230 (35%), Gaps = 27/230 (11%)
Query: 13 EISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEE----KVPMWIRNTKHGWITAEYGMLP 67
E++ V+K A GS + + GDT +LTT + + + + G +P
Sbjct: 13 EMTFETGCVAKQANGSIVARSGDTVVLTTTCISDTPRTGIDFFPLLVDFEERYYSAGKIP 72
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R GR + R+I R++RS+ D + ++ +
Sbjct: 73 GGFIKR------EGRPTENAILSARVIDRSIRSLFDENLRYDIHVVATVLSVDQLNPPSV 126
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
AI A VAL G + A+ G + +V+ + +
Sbjct: 127 LAINAASVALM-------------ISEIPWGGPIGAVRIGYINDQLVVNPLEEQMLESKL 173
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
D G I V+ A S++ L+LA I ++ +Q+++
Sbjct: 174 DLLVSGHKDG-ITMVEAGANE--VSEELLVDALDLAHTEIKKIVAMQEEI 220
>gi|83950704|ref|ZP_00959437.1| polyribonucleotide nucleotidyltransferase [Roseovarius nubinhibens
ISM]
gi|83838603|gb|EAP77899.1| polyribonucleotide nucleotidyltransferase [Roseovarius nubinhibens
ISM]
Length = 713
Score = 155 bits (391), Expect = 5e-36, Method: Composition-based stats.
Identities = 45/243 (18%), Positives = 87/243 (35%), Gaps = 17/243 (6%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +R I + GS L G+T L TL +E+ + T
Sbjct: 318 RIDGRDTTTVRPIVSETGLLPRTHGSALFTRGETQGLVVTTLGTGDDEQFIDALHGTFKS 377
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + R+ G + RAL++V+ I + +
Sbjct: 378 NFLLHYNFPPYSVGEAGRVGPPGRREIGHGKL----AWRALQAVLPAPTDFPYTIRVVSE 433
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ G +++ D ++ + +L+ + D+
Sbjct: 434 ITESNGSSSMASVCGGSLSMMDAGVPLKAPVAGVAMGLILEDD--------GDFAILTDI 485
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T+ G I +Q + A + + L AKD ++
Sbjct: 486 LGDEDHLGDMDFKVAGTEKG-ITSLQMDIKVAGITPEIMKQALAQAKDGRLHILGEMSKA 544
Query: 238 ISN 240
++
Sbjct: 545 LTE 547
Score = 102 bits (255), Expect = 3e-20, Method: Composition-based stats.
Identities = 28/228 (12%), Positives = 63/228 (27%), Gaps = 25/228 (10%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGN 72
++L V++ A+GS + G+T ++ T ++ E
Sbjct: 16 LTLETGKVARQADGSVIATLGETSVMANVTFAKEPKPGQDFFPLTVHYQEKYYAAGKVP- 74
Query: 73 RVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITG 132
R + R+I R +R + ++ A+
Sbjct: 75 -GGFFKREARPTEKETLTARLIDRPIRPLFVDGFKNEVLVMCTVLSHDLVNDPDIVAMIA 133
Query: 133 AWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDS------TID 186
A A G +A G G I++ +
Sbjct: 134 ASAA-------------LTISGAPFMGPIAGCRVGYEDGEYILNPTVDDMHELRSNPDQR 180
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
+D T ++ V+ A +++ + A +++ ++ L
Sbjct: 181 LDLVVAGTRD-AVMMVESEAYE--LTEEEMLGAVTFAHEQLKPVVDLI 225
>gi|327399809|ref|YP_004340678.1| polyribonucleotide nucleotidyltransferase [Hippea maritima DSM
10411]
gi|327182438|gb|AEA34619.1| Polyribonucleotide nucleotidyltransferase [Hippea maritima DSM
10411]
Length = 703
Score = 155 bits (391), Expect = 6e-36, Method: Composition-based stats.
Identities = 44/242 (18%), Positives = 87/242 (35%), Gaps = 18/242 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
+R+ GR +++R I+ V A GS + G+T L TL + ++ + +
Sbjct: 314 VRIDGRGLDEIRPITCEVGVLPRAHGSAVFTRGETQALVATTLGSREDAQIIDDVSEEGY 373
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y LP STG + R+ G RA+ ++ I +
Sbjct: 374 ERFMLHYNFLPFSTGEVKRLGPPGRREIGHGNL----AKRAIEPMLPSEDDFPYAIRVVS 429
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
D+++++G + A + G+ ++L D ++ + + + + D
Sbjct: 430 DILESNGSSSMATVCGSTLSLMDAGVPIKKPVSGVAMGLI---------KYEGGYAILTD 480
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T G I +Q + L AK+ ++
Sbjct: 481 ILGDEDHYGDMDFKVAGTKDG-ITALQMDIKITGVDAVLLKEALYKAKEARLFILNKMLA 539
Query: 237 VI 238
V+
Sbjct: 540 VL 541
Score = 98.8 bits (244), Expect = 6e-19, Method: Composition-based stats.
Identities = 40/234 (17%), Positives = 76/234 (32%), Gaps = 28/234 (11%)
Query: 13 EISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVP-----MWIRNTKHGWITAEYGML 66
++++ +K A+G+C+++ GDT +L TA ++ P + G +
Sbjct: 12 KLTIETGWYAKQADGACVIRMGDTMVLATAVSSKEPPKEFLDFLPLTVNYQERFYAAGKI 71
Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
P R G+ + R+I R++R + Q+II +
Sbjct: 72 PGGFVKR------EGKPTVHETLVSRLIDRSIRPLFPKDYKQEIQVIITTISADQENDPA 125
Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
+I A +L G VA + E
Sbjct: 126 IISILAASCSLC-------------LSDIPFLGPVAGVRVSRFENGLKAFASLKEIDDSR 172
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
++ T I ++ A S+D + KD I L+ Q+++I
Sbjct: 173 LNLILAGTKD-AINMIEAGA--GELSEDEMVDAIMFGKDNIDILLDAQEEIIKK 223
>gi|225871841|ref|YP_002753295.1| polyribonucleotide nucleotidyltransferase [Acidobacterium
capsulatum ATCC 51196]
gi|254782698|sp|C1F8M1|PNP_ACIC5 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|225791918|gb|ACO32008.1| polyribonucleotide nucleotidyltransferase [Acidobacterium
capsulatum ATCC 51196]
Length = 806
Score = 155 bits (391), Expect = 6e-36, Method: Composition-based stats.
Identities = 47/243 (19%), Positives = 91/243 (37%), Gaps = 18/243 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
+R R +++R+I++ V GS L G+T L TATL + + +
Sbjct: 316 VRPDRRGFDEIRQITIEVGVLPRTHGSALFTRGETQALVTATLGTNDDSQRLETFEGEQK 375
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P S G + V R+ G RA+ +V+ + +
Sbjct: 376 KRFMLHYNFPPFSVGEVGRMTGVGRREVGHGAL----AERAISAVLPGEDESPYALRVVS 431
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
D+++++G + A++ GA +AL D ++ + V +G AI
Sbjct: 432 DILESNGSSSMASVCGASLALMDAGIPLKGAVAGVAMGLVKEGDEYAILTD--------- 482
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T G I +Q + + + + A+ L+ +
Sbjct: 483 IAGAEDHYGDMDFKVAGTRKG-ITALQMDIKISGITGQIMREAMEQARRGRMFLLDKMDE 541
Query: 237 VIS 239
+++
Sbjct: 542 ILA 544
Score = 101 bits (250), Expect = 1e-19, Method: Composition-based stats.
Identities = 38/225 (16%), Positives = 67/225 (29%), Gaps = 19/225 (8%)
Query: 13 EISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG 71
++ ++K A G+ LV G++ +L TA I EY
Sbjct: 14 KLHFETGRMAKQASGAALVTQGESVVLATAVAAPDPKEGIDFFPLTVDYREYAYAGGRIP 73
Query: 72 NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAIT 131
GR R R I R +R + Q+I + I
Sbjct: 74 --GGFIKREGRPSEREILTSRQIDRPIRPLFPEGFRNETQVIALVFSADKENDPDIVGIN 131
Query: 132 GAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANF 191
A AL V A+ G + G +++ Y E ++
Sbjct: 132 AASAALALSDIPFAG-------------PVGAVRVGYVNGEYVINPSYAERRDSSINITV 178
Query: 192 VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
V T G IV ++ + A ++ ++ I ++ +
Sbjct: 179 VGTMDG-IVMIESGS--AEVPEEVVLGAIDFGHTEIKKIVAAINE 220
>gi|299137357|ref|ZP_07030539.1| polyribonucleotide nucleotidyltransferase [Acidobacterium sp.
MP5ACTX8]
gi|298600762|gb|EFI56918.1| polyribonucleotide nucleotidyltransferase [Acidobacterium sp.
MP5ACTX8]
Length = 818
Score = 155 bits (391), Expect = 6e-36, Method: Composition-based stats.
Identities = 47/244 (19%), Positives = 87/244 (35%), Gaps = 18/244 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
+R R +++R I++ V GS L G+T L +ATL + + +
Sbjct: 314 IRPDHRAFDEIRAITIETGVLPRVHGSALFTRGETQALVSATLGTTDDAQRMESYEGEQK 373
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P S G + V R+ G RA+ +V+ + +
Sbjct: 374 RKFMLHYNFPPFSVGEVGRMTGVGRREIGHGAL----AWRAIEAVLPGEDESPYTLRVVS 429
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
D+++++G + A + GA ++L ++ + V +G AI
Sbjct: 430 DILESNGSSSMATVCGASLSLMQAGIPLKGSVAGVAMGLVKEGDKYAILTD--------- 480
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T +G I +Q + + L A+ L+
Sbjct: 481 IAGAEDHYGDMDFKVAGTRNG-ITALQMDIKIMGITAQIMREALEQARHGRLFLLDKMDA 539
Query: 237 VISN 240
+IS
Sbjct: 540 IISK 543
Score = 109 bits (271), Expect = 4e-22, Method: Composition-based stats.
Identities = 45/232 (19%), Positives = 77/232 (33%), Gaps = 27/232 (11%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKHGWITAEYGMLPR 68
I ++K A G+ GD +L TA E + + ++ T G +P
Sbjct: 15 IKFETGRIAKQASGAAYTTSGDNAVLATAVASPDPKEGIDFFPLTVEYREFTYAGGRIPG 74
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
R GR + R I R +R + + Q++ +
Sbjct: 75 GFIKR------EGRPSEKEILTSRQIDRPIRPLFPEAFRNETQVVAFVYSADKENDPDVL 128
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
I GA A G V A+ G + IV+ Y E T ++
Sbjct: 129 GINGASCA-------------LALSDIPFHGPVGAVRIGYIDEQYIVNPTYTERLTSKLN 175
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
V T G IV V+ A+ ++ + A + I ++ +D++S
Sbjct: 176 IMVVGTKDG-IVMVESGAKE--IPEEVVVGAIEFAHEEIKKIVAGIEDLVSR 224
>gi|195952523|ref|YP_002120813.1| polynucleotide phosphorylase/polyadenylase [Hydrogenobaculum sp.
Y04AAS1]
gi|226702655|sp|B4U6R7|PNP_HYDS0 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|195932135|gb|ACG56835.1| Polyribonucleotide nucleotidyltransferase [Hydrogenobaculum sp.
Y04AAS1]
Length = 703
Score = 155 bits (391), Expect = 6e-36, Method: Composition-based stats.
Identities = 50/244 (20%), Positives = 82/244 (33%), Gaps = 19/244 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWI-----RNTKH 56
R+ GR+E +R I++ + GS + G T L T TL K +
Sbjct: 310 RIDGRKETDIRPITIEMHPLERPHGSAVFTRGQTQALATVTLAPKDEAQLVETIFEGETF 369
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P STG R+ G RAL ++ I +
Sbjct: 370 KRFMLHYNFPPFSTGEARPWGPPRRREIGHGAL----AERALEPLLAKEEDFPYIIRVVS 425
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
D+++++G + A + +AL D M+ + + G I
Sbjct: 426 DILESNGSSSMATVCAGSLALFDAGVPMKKHVAGIAMGLIKDGDNFVILTD--------- 476
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T G + VQ + S+D LN AK+ ++ +
Sbjct: 477 ILGDEDHLGDMDFKVAGTRDG-VTSVQMDIKIKGLSKDIMIKALNQAKEARMFILDKLYE 535
Query: 237 VISN 240
I
Sbjct: 536 AIPE 539
Score = 98.0 bits (242), Expect = 9e-19, Method: Composition-based stats.
Identities = 46/231 (19%), Positives = 77/231 (33%), Gaps = 27/231 (11%)
Query: 13 EISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGML----P 67
I + + A+ S L+ G T +L T + E+ I E P
Sbjct: 12 PIYIEANKYAHQADSSILISQGGTKVLVTVCVSEEPLCGIDFAPLSVDYRERSFAWGKIP 71
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R G+ R I R+I R LR ++ L +
Sbjct: 72 GGFIKR------EGKPTDREVLISRVIDRPLRPLMPKGFLNEVVVTCLTLSADDKYDPDV 125
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
AITGA A S +G +A + + G I++ Y + D+
Sbjct: 126 LAITGASAA-------------LVSSSVPFEGPIAGMRVCRVNGEFIINPTYEQRKNSDM 172
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
D ++ IV V+G A+ + L ++ LIK Q++++
Sbjct: 173 DIVMALSKD-AIVMVEGGAKEVE--ESVLLDALFFGLEKGQTLIKAQEELV 220
>gi|299139261|ref|ZP_07032437.1| ribonuclease PH [Acidobacterium sp. MP5ACTX8]
gi|298598941|gb|EFI55103.1| ribonuclease PH [Acidobacterium sp. MP5ACTX8]
Length = 248
Score = 155 bits (391), Expect = 6e-36, Method: Composition-based stats.
Identities = 116/239 (48%), Positives = 155/239 (64%), Gaps = 2/239 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
R GR +Q R + LT AEGS L++ G T +L AT+E VP W+RN+ GW+T
Sbjct: 10 FRSGGRAASQARALRLTPGFVATAEGSVLIEVGHTRVLCNATVENGVPGWMRNSGRGWVT 69
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPR+T R RE+ G+ GGR+ EIQR+IGR+LRSVVD+ LG R II+DCDV+Q
Sbjct: 70 AEYGMLPRATLTRTARESERGKIGGRTHEIQRLIGRSLRSVVDMRLLGERTIILDCDVLQ 129
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTAAITGA AL L + + + LK VAA S G++ G ++DL Y
Sbjct: 130 ADGGTRTAAITGACTALALALGKLVQAGSLKES--PLKQMVAATSVGIVDGRVLLDLAYE 187
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
EDS +VD N VMT G +VE Q +AER T+++ ML++A I +L+K Q++ ++
Sbjct: 188 EDSRAEVDMNVVMTADGGLVETQATAERGTYTRAQLNEMLDVAAVGIEELLKAQRECLA 246
>gi|332532415|ref|ZP_08408293.1| polyribonucleotide nucleotidyltransferase [Pseudoalteromonas
haloplanktis ANT/505]
gi|332038058|gb|EGI74505.1| polyribonucleotide nucleotidyltransferase [Pseudoalteromonas
haloplanktis ANT/505]
Length = 708
Score = 155 bits (391), Expect = 6e-36, Method: Composition-based stats.
Identities = 43/242 (17%), Positives = 88/242 (36%), Gaps = 18/242 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR+ + +R + + V GS + G+T L TATL + ++ + T
Sbjct: 317 RIDGREPDMIRALDVMTGVLPRTHGSAIFTRGETQALVTATLGTERDSQLIDDLTGTHKN 376
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P G + R+ G R + +V+ I + +
Sbjct: 377 HFMLNYNFPPFCVGETGFVGSPKRREIGHGNL----AKRGISAVMPTLTEFPYSIRVVSE 432
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ G +AL + ++ + V + + +
Sbjct: 433 ITESNGSSSMASVCGTSLALMNAGVPIKASVAGIAMGLVKEDDKFVVLSD---------I 483
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T +G I +Q + +Q+ L AK ++++ +
Sbjct: 484 LGDEDHLGDMDFKVAGTAAG-ITALQMDIKIEGITQEIMQIALKQAKAARLHILEVMDEA 542
Query: 238 IS 239
IS
Sbjct: 543 IS 544
Score = 99.5 bits (246), Expect = 3e-19, Method: Composition-based stats.
Identities = 35/228 (15%), Positives = 73/228 (32%), Gaps = 27/228 (11%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----HGWITAEYGMLPR 68
++L +++ A+G+ L GDT +L T + + + G +P
Sbjct: 15 VTLETGAIARQADGAVLASIGDTSVLVTVVGKREAQPGQDFFPLTVNYQERMYAAGRIPG 74
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
R GR I R+I R +R + + Q+I + +
Sbjct: 75 GFLKR------EGRPNDGETLIARLIDRPIRPLFPSGFVNEVQVIATVVSVNPEIQPDMV 128
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+ G A G + A G + G +++ E +D
Sbjct: 129 AMIGTSAA-------------LAISGIPFSGPIGASRVGYINGEYVLNPTLKELEESQLD 175
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
T ++ V+ +E ++D + ++ +I ++
Sbjct: 176 LVVAGT-DKAVLMVE--SEANVLAEDVMLGAVVYGHEQSQAIITAIEE 220
>gi|313892760|ref|ZP_07826341.1| polyribonucleotide nucleotidyltransferase [Veillonella sp. oral
taxon 158 str. F0412]
gi|313442691|gb|EFR61102.1| polyribonucleotide nucleotidyltransferase [Veillonella sp. oral
taxon 158 str. F0412]
Length = 689
Score = 155 bits (391), Expect = 6e-36, Method: Composition-based stats.
Identities = 48/244 (19%), Positives = 89/244 (36%), Gaps = 18/244 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
+R GR+ +++R IS V GS L G T +L AT+ E + I
Sbjct: 309 IRPDGRKLDEVRPISCRTGVLPRTHGSGLFTRGQTQVLNVATVAPLSETQTIDGIGIETE 368
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y S G R+ G RAL V+ A + +
Sbjct: 369 KRYIHHYNFPSFSVGETRSSRGPGRREIGHGAL----AERALVPVIPSEADFPYALRLVS 424
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V++++G + A++ G+ ++L D ++ + V +G + D
Sbjct: 425 EVLESNGSSSMASVCGSTLSLMDAGVPIKAPVAGIAMGLVTQGE---------HYTILTD 475
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED+ D+D T G + +Q + + S++ L A ++ + D
Sbjct: 476 IQGMEDALGDMDFKVAGTAKG-VTAIQMDIKISGLSREILQEALEQAHKGRMHIMGIMLD 534
Query: 237 VISN 240
I+
Sbjct: 535 TIAE 538
Score = 113 bits (281), Expect = 3e-23, Method: Composition-based stats.
Identities = 43/229 (18%), Positives = 82/229 (35%), Gaps = 26/229 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEK---VPMWIRNTKHGWITAEYGMLP 67
R +++ ++K A G+ +V +GDT +L TAT ++ + + + G LP
Sbjct: 11 RTLTIETGELAKQAGGAVMVGYGDTRVLVTATGSKEAKDIDFFPLTVDYEEKMYAVGRLP 70
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R R + R+I R +R + D ++ + D
Sbjct: 71 GGFIKR------EARPPETAILNSRLIDRPIRPLFDKGVRNEVHVVATVMSVDQDCDPAV 124
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
+ GA A G +A + G + G +V+ + D+
Sbjct: 125 CGMIGASAA-------------LSISDVPWNGPIAGVRMGRINGEFVVNPTKAQLEETDL 171
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ T I+ V+G AE +D ++ A + I ++ Q+D
Sbjct: 172 NIVVAGTKD-AILMVEGGAEEVP--EDIILEVIMAAHEEIKKIVAFQED 217
>gi|77359947|ref|YP_339522.1| polynucleotide phosphorylase/polyadenylase [Pseudoalteromonas
haloplanktis TAC125]
gi|123588883|sp|Q3IJ73|PNP_PSEHT RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|76874858|emb|CAI86079.1| polynucleotide phosphorylase, has polyadenylase activity; part of
the degradosome [Pseudoalteromonas haloplanktis TAC125]
Length = 708
Score = 155 bits (390), Expect = 6e-36, Method: Composition-based stats.
Identities = 43/242 (17%), Positives = 87/242 (35%), Gaps = 18/242 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR+ + +R + + V GS + G+T L TATL + ++ + T
Sbjct: 317 RIDGREPDMIRALDVMTGVLPRTHGSAIFTRGETQALVTATLGTERDSQLIDDLTGTHKN 376
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P G + R+ G R + +V+ I + +
Sbjct: 377 HFMLNYNFPPFCVGETGFVGSPKRREIGHGNL----AKRGIAAVMPTLTEFPYSIRVVSE 432
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ G +AL + ++ + V + + +
Sbjct: 433 ITESNGSSSMASVCGTSLALMNAGVPIKASVAGIAMGLVKEDDKFVVLSD---------I 483
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T +G I +Q + +Q+ L AK ++++
Sbjct: 484 LGDEDHLGDMDFKVAGT-AGGITALQMDIKIEGITQEIMQIALKQAKAARLHILEVMDKA 542
Query: 238 IS 239
IS
Sbjct: 543 IS 544
Score = 101 bits (251), Expect = 1e-19, Method: Composition-based stats.
Identities = 36/228 (15%), Positives = 73/228 (32%), Gaps = 27/228 (11%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----HGWITAEYGMLPR 68
++L +++ A+G+ L GDT +L T + + + G +P
Sbjct: 15 VTLETGAIARQADGAVLASIGDTSVLVTVVGKREAQPGQDFFPLTVNYQERMYAAGRIPG 74
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
R GR I R+I R +R + + Q+I + +
Sbjct: 75 GFLKR------EGRPNDGETLIARLIDRPIRPLFPSGFVNEVQVIATVVSVNPEIQPDMV 128
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+ G A G + A G + G +++ E +D
Sbjct: 129 ALIGTSAA-------------LAISGIPFSGPIGATRVGYIDGEYVLNPTLKELEESKLD 175
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
T ++ V+ +E ++D + ++ +I K+
Sbjct: 176 LVVAGT-DNAVLMVE--SEADVLAEDIMLGAVVYGHEQAQAIITAIKE 220
>gi|68171419|ref|ZP_00544810.1| 3' exoribonuclease:RNA binding S1:KH, type 1 [Ehrlichia chaffeensis
str. Sapulpa]
gi|67999161|gb|EAM85820.1| 3' exoribonuclease:RNA binding S1:KH, type 1 [Ehrlichia chaffeensis
str. Sapulpa]
Length = 554
Score = 155 bits (390), Expect = 6e-36, Method: Composition-based stats.
Identities = 49/243 (20%), Positives = 88/243 (36%), Gaps = 18/243 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +++R+I + V A GS L G+T L L +E++ + +
Sbjct: 77 RIDGRAFDEIRDIEIEVDVLPKAHGSALFTRGNTQALVVTALGTPQDEQIVDDLDGDRRE 136
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P + G A R+ G + RA+R V+ + I + +
Sbjct: 137 NFLLHYNFPPYAVGESAALRAPGRREIGHGKL----AWRAIRYVLPEKSDFPYTIRVVSE 192
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ ++DG + A + GA +AL D ++ + + + I +
Sbjct: 193 ITESDGSSSMATVCGASLALMDTGVPIKSPVAGIAMGLIKEDDRFIILSD---------I 243
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T G + +Q + + D L AKD ++ V
Sbjct: 244 LGDEDHLGDMDFKVAGTAEG-VTALQMDMKISGIDIDIIEKALLQAKDGRMHILSKMNAV 302
Query: 238 ISN 240
I
Sbjct: 303 IQE 305
>gi|330982561|gb|EGH80664.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas syringae
pv. aptata str. DSM 50252]
Length = 519
Score = 155 bits (390), Expect = 6e-36, Method: Composition-based stats.
Identities = 45/243 (18%), Positives = 92/243 (37%), Gaps = 18/243 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +R +++ V GS L G+T L ATL + ++ + K
Sbjct: 93 RIDGRDTRTVRPLNIEVGVLPKTHGSALFTRGETQALVVATLGTARDAQLLDTLEGEKKD 152
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + R+ G + R++++++ + + I + +
Sbjct: 153 PFMLHYNFPPFSVGECGRMGGAGRREIGHGRL----ARRSVQAMLPGADVFPYTIRVVSE 208
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ GA +AL D M+ + V +G AI +
Sbjct: 209 ITESNGSSSMASVCGASLALMDAGVPMKAPVAGIAMGLVKEGEKFAILTD---------I 259
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T G + +Q + +++ L A + +++ +
Sbjct: 260 LGDEDHLGDMDFKVAGTSKG-VTALQMDIKIKGITEEIMEIALGQALEARLNILGQMNQI 318
Query: 238 ISN 240
I
Sbjct: 319 IGQ 321
>gi|257063633|ref|YP_003143305.1| RNAse PH [Slackia heliotrinireducens DSM 20476]
gi|256791286|gb|ACV21956.1| RNAse PH [Slackia heliotrinireducens DSM 20476]
Length = 240
Score = 155 bits (390), Expect = 6e-36, Method: Composition-based stats.
Identities = 114/238 (47%), Positives = 155/238 (65%), Gaps = 5/238 (2%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R+ R + +R ++L R V K A GSCLVKFGDTH+L AT+EE+VP W +N+ GW+TA
Sbjct: 5 RVDNRADRAIRPVTLERGVMKNATGSCLVKFGDTHVLCAATIEERVPGWRKNSGLGWVTA 64
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSAL-GSRQIIIDCDVIQ 120
EY MLP ST R RE + GRSQEI+R+IGR+LR+V D+ A+ G + +DCDV+Q
Sbjct: 65 EYAMLPASTSKRTPREYKGRK--GRSQEIERLIGRSLRNVCDMGAMGGEVLMTVDCDVLQ 122
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+ITGAWVA +D + L G VAAIS GM+ G ++DLDY
Sbjct: 123 ADGGTRTASITGAWVAAYDAFEMWRKS--GKCKRNPLFGQVAAISVGMVGGRLLLDLDYR 180
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
EDS ++D N VM G +E+QG+ E+A F + ML++A+ I +L+ LQ+ +
Sbjct: 181 EDSKAEIDMNVVMNAKGEFIEIQGTGEQAPFGKATLDDMLSMAQSGIEELLALQRAAV 238
>gi|90409343|ref|ZP_01217432.1| polyribonucleotide nucleotidyltransferase [Psychromonas sp. CNPT3]
gi|90309551|gb|EAS37747.1| polyribonucleotide nucleotidyltransferase [Psychromonas sp. CNPT3]
Length = 700
Score = 155 bits (390), Expect = 6e-36, Method: Composition-based stats.
Identities = 46/243 (18%), Positives = 88/243 (36%), Gaps = 18/243 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +R + + V GS L G+T L TATL + ++ + K
Sbjct: 314 RIDGRDPESVRALDVRTGVLPRTHGSALFTRGETQALVTATLGTQRDAQIIDSLMGEKKD 373
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P G + R+ G + R + +V+ + + +
Sbjct: 374 HFLLHYNFPPYCVGETGFVGSPKRREIGHGRL----AKRGVLAVMPDLEEFPYTVRVVSE 429
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ GA +AL D ++ + V +G + +
Sbjct: 430 ITESNGSSSMASVCGASLALMDAGVPLKASVAGIAMGLVKEGDEFVVLSD---------I 480
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T G I +Q + +++ LN AK ++ + +
Sbjct: 481 LGDEDHLGDMDFKVAGTSEG-ITALQMDIKIEGITKEIMQIALNQAKAARLHILSVMDEA 539
Query: 238 ISN 240
IS
Sbjct: 540 ISE 542
Score = 88.7 bits (218), Expect = 5e-16, Method: Composition-based stats.
Identities = 32/228 (14%), Positives = 71/228 (31%), Gaps = 27/228 (11%)
Query: 14 ISLTRRV-SKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGMLPR 68
++L V ++ A + + DT + + +E+ + + T G +P
Sbjct: 15 VTLETGVMARQATAAVMCSMDDTCVFVSVVGKQATDEERDFFPLTVNYQEKTYAAGKIPG 74
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
R GR I R+I R +R + Q+I I +
Sbjct: 75 GFFKR------EGRPSEEETLISRLIDRPVRPLFPAGFKNEVQVIATVVSINPEINPDIV 128
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+ A G + G + G +++ E D++
Sbjct: 129 AMIATSAA-------------LSISGMPFNGPIGCARVGYIDGQYLLNPTKTELEASDLN 175
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
T++ ++ V+ +E S+D + ++ ++ +
Sbjct: 176 LVVSGTEN-AVLMVE--SEAGILSEDVMLGAVVYGHEQQQVVVSAINE 220
>gi|167720743|ref|ZP_02403979.1| ribonuclease PH [Burkholderia pseudomallei DM98]
Length = 219
Score = 155 bits (390), Expect = 6e-36, Method: Composition-based stats.
Identities = 118/221 (53%), Positives = 159/221 (71%), Gaps = 2/221 (0%)
Query: 11 MREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRST 70
MR++ +TR +K+AEG+ LV+FGDT ++ TA++ E+VP ++R GW+TAEYGMLPR+T
Sbjct: 1 MRDVRITRHYTKHAEGAVLVEFGDTKVICTASVAERVPEFLRERGQGWLTAEYGMLPRAT 60
Query: 71 GNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAI 130
R REA G+Q GR+QEIQR+IGRALR+V DL+ALG R + +DCDVIQADGGTRTA+I
Sbjct: 61 HTRSDREAARGKQTGRTQEIQRLIGRALRAVFDLNALGPRTLHLDCDVIQADGGTRTASI 120
Query: 131 TGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDAN 190
TGA+VA HD + + + + +VAAIS G+ G P++DLDY EDS D D N
Sbjct: 121 TGAFVAAHDAVTKLVAAGRIARS--PITDYVAAISVGVFGGTPVLDLDYDEDSACDTDMN 178
Query: 191 FVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231
VMT +G VEVQG+AE A FS+ A+L+LA+ I +L+
Sbjct: 179 VVMTGAGGFVEVQGTAEGAPFSRTEMNALLDLAQAGIGELV 219
>gi|323341663|ref|ZP_08081896.1| polyribonucleotide nucleotidyltransferase [Erysipelothrix
rhusiopathiae ATCC 19414]
gi|322464088|gb|EFY09281.1| polyribonucleotide nucleotidyltransferase [Erysipelothrix
rhusiopathiae ATCC 19414]
Length = 712
Score = 155 bits (390), Expect = 6e-36, Method: Composition-based stats.
Identities = 50/244 (20%), Positives = 92/244 (37%), Gaps = 18/244 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
+R GR +++R +++ + GS L G+T +L+ TL + ++ + +
Sbjct: 318 IRPDGRGVDEVRPLNVQIDLLSRVHGSGLFTRGETQVLSVCTLGAMADTQIIDDLSDVDS 377
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P S G + A R+ G RAL V+ I +
Sbjct: 378 KRFLHHYNFPPYSVGETGRMGAPGRREIGHGALG----ERALSYVIPSEEEFPYTIRLVA 433
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V++++G + A+I +AL ++ + + V G + D
Sbjct: 434 EVLESNGSSSQASICAGSLALMAAGVPVKAAVSGIAMGLVQYGDD---------YTILTD 484
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T G I +Q + S+D L AK A+++ +
Sbjct: 485 IQGMEDHFGDMDFKVAGTKKG-ITALQMDIKIKGLSEDILREALAQAKTGRAEMMAAMDE 543
Query: 237 VISN 240
VIS
Sbjct: 544 VISE 547
Score = 102 bits (255), Expect = 3e-20, Method: Composition-based stats.
Identities = 44/234 (18%), Positives = 83/234 (35%), Gaps = 27/234 (11%)
Query: 13 EISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEK---VPMWIRNTKHGWITAEYGMLPR 68
+ + ++K A GS LV++ DT +L+ AT +K + + + G +P
Sbjct: 14 NLKVETGELAKQAGGSVLVRYEDTVVLSAATASKKAKDIDFFPLTVTYEEKLYSVGKIPG 73
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
R GR + R+I R +R + Q++ + D A
Sbjct: 74 GFLRR------EGRPSEHATLTSRLIDRTIRPLFAEGFRNEVQVVNTVLSVDQDSAPDMA 127
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+ GA ++L +G +A ++ G + +++ E +
Sbjct: 128 AMFGASLSLM-------------VSDIPFEGPIAGVTVGYIDETFVINPTLEEQEKSKMH 174
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNEV 242
T I V+ AE S++ + + I L Q + I+ EV
Sbjct: 175 LIVAGTKD-AINMVEAGAEE--VSEELMLEAMLFGHEWIKRLCAFQIE-IAQEV 224
>gi|256028665|ref|ZP_05442499.1| polynucleotide phosphorylase/polyadenylase [Fusobacterium sp. D11]
Length = 699
Score = 155 bits (390), Expect = 6e-36, Method: Composition-based stats.
Identities = 47/243 (19%), Positives = 90/243 (37%), Gaps = 18/243 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR ++R + V GS L G+T L TL +E++ + +
Sbjct: 324 RVDGRTTTEIRPLDAQINVLPIPHGSALFTRGETQSLAITTLGTKEDEQLIDDLEKEYYK 383
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + + R+ G RALR V+ I + +
Sbjct: 384 KFYLHYNFPPYSVGEVGRMGSPGRRELGHGSL----AERALRYVIPTEEEFPYTIRVVSE 439
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A+I G ++L +++ + + +G + ++
Sbjct: 440 ITESNGSSSQASICGGSLSLMAAGVPIKEHVAGIAMGLIKEGEEFTVLTDIM-------- 491
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T SG I +Q + +++ LN A ++++L
Sbjct: 492 -GLEDHLGDMDFKVAGTKSG-ITALQMDIKITGITEEIMRIALNQAHQARLEILELMNST 549
Query: 238 ISN 240
IS
Sbjct: 550 ISK 552
Score = 100 bits (248), Expect = 2e-19, Method: Composition-based stats.
Identities = 38/230 (16%), Positives = 79/230 (34%), Gaps = 27/230 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGML 66
R + ++ +S+ + G+ ++++GDT LL+TA + + + G
Sbjct: 14 RTLKVSTGKISRQSSGAIVIQYGDTVLLSTANRSKEARKGADFFPLTVDYIEKFYSTGKF 73
Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
P R GR + + R+I R +R + I+
Sbjct: 74 PGGFNKR------EGRPSTNATLVARLIDRPIRPMFPDGFNYDVHIVNTVLSYDEINTPD 127
Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
I G+ +AL G VA ++ G G I++ E +
Sbjct: 128 YLGIIGSSLALM-------------ISDIPFLGPVAGVTVGYKNGEFILNPSPKELEESE 174
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+D + T + V+ A+ ++ + A + I + + Q++
Sbjct: 175 LDLSVAGTKE-AVNMVEAGAKE--LDEETMLKAIMFAHENIKKICEFQEE 221
>gi|167626449|ref|YP_001676949.1| polynucleotide phosphorylase/polyadenylase [Francisella
philomiragia subsp. philomiragia ATCC 25017]
gi|189037306|sp|B0TZ09|PNP_FRAP2 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|167596450|gb|ABZ86448.1| Polyribonucleotide nucleotidyltransferase [Francisella philomiragia
subsp. philomiragia ATCC 25017]
Length = 693
Score = 155 bits (390), Expect = 6e-36, Method: Composition-based stats.
Identities = 41/244 (16%), Positives = 84/244 (34%), Gaps = 17/244 (6%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +R I++ V GS L G+T L TL + ++ + +
Sbjct: 317 RIDGRCTETIRPINVKIGVLPGVHGSALFTRGETQALVVTTLGSDRDAQLVESLDGIEKS 376
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G R R + RA ++V + I +
Sbjct: 377 RYMLHYNFPPYSVGECGMVGMAPKR---REIGHANLAKRATQAVFPNEEAYPYVVRIVSE 433
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+++++G + A + G+ +++ D + + + + G A+ +
Sbjct: 434 ILESNGSSSMATVCGSSLSMMDAGVPIAEPVAGIAMGLIKDGAKYAVLSD---------I 484
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T G + +Q + S++ A+ ++ + +V
Sbjct: 485 LGDEDHLGDMDFKVAGTRYG-VTALQMDIKIKGISREILEQAFEQARTGRLHILGIMNEV 543
Query: 238 ISNE 241
I
Sbjct: 544 IREH 547
Score = 79.5 bits (194), Expect = 4e-13, Method: Composition-based stats.
Identities = 36/229 (15%), Positives = 68/229 (29%), Gaps = 27/229 (11%)
Query: 13 EISLTRR-VSKYAEGSCLVKFG----DTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLP 67
EI L +++ A+GS V G + ++ + + + T G +P
Sbjct: 14 EIVLETGGMARQADGSVTVSCGNNVVLVTTVVKKSVAAGADFFPLSVHYLEKTYAAGKIP 73
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R GR I R+I R++R QI+
Sbjct: 74 GGFLRR------EGRPSEEQILISRLIDRSIRPSFPDGFFNEIQIVATVLSYDGSFSPDM 127
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
A+ G ++ +A + G G I++ + E D+
Sbjct: 128 LALIG-------------ASASLAISGAPYDDIIAGVRVGYTNGKYILNPNKEELKESDL 174
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
D T I+ V+ +E + + + A + +I
Sbjct: 175 DLVVSGT-DDAILMVE--SEANSLPESVMLGGILYAHKHLKTIINSISK 220
>gi|134299798|ref|YP_001113294.1| polynucleotide phosphorylase/polyadenylase [Desulfotomaculum
reducens MI-1]
gi|187610295|sp|A4J5W6|PNP_DESRM RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|134052498|gb|ABO50469.1| Polyribonucleotide nucleotidyltransferase [Desulfotomaculum
reducens MI-1]
Length = 740
Score = 155 bits (390), Expect = 6e-36, Method: Composition-based stats.
Identities = 45/243 (18%), Positives = 94/243 (38%), Gaps = 18/243 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
+R+ GR +++R IS+ V G+ L G T +L+ ATL EE++ + +
Sbjct: 324 LRIDGRAIDEIRPISVEVGVLPRTHGTGLFTRGQTQILSVATLGSISEEQILDGLGVEES 383
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P STG + R+ G RAL ++ + I +
Sbjct: 384 KRYMHHYNFPPFSTGETKPMRSPGRREIGHGAL----AERALEPMIPPEEVFPYTIRVVS 439
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+ I+++G T ++ G+ ++L D ++ + +++ +
Sbjct: 440 EAIESNGSTSMGSVCGSTLSLMDAGVPLKAPVAGVAMGLIMEEDQFTVLTD--------- 490
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D + +G + +Q + +++ F L A ++ +
Sbjct: 491 IQGLEDHLGDMDFKVAGSANG-VTALQMDIKIPGITREVFEQALEQAHRGRMFILGKMLE 549
Query: 237 VIS 239
V+S
Sbjct: 550 VLS 552
Score = 109 bits (273), Expect = 3e-22, Method: Composition-based stats.
Identities = 41/229 (17%), Positives = 85/229 (37%), Gaps = 26/229 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEE---KVPMWIRNTKHGWITAEYGMLP 67
R ++L ++K A G+ LV +G+T +L TAT+ + + + + G +P
Sbjct: 16 RTLTLETGRMAKQASGAVLVTYGETVVLVTATVAKNTRDIDFFPLTVDYEERLYAVGKIP 75
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R GR ++ R+I R +R + Q++ + D
Sbjct: 76 GGFIKR------EGRPSEKAILSGRLIDRPIRPLFPKHMRNEVQVVATVMSVDQDNAPEI 129
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
AA+ GA ALH LK + + G + G +++ + D+
Sbjct: 130 AAMIGASAALH-------------ISKIPLKKPIGGVIVGRVDGQFVINPMVRQAENSDM 176
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
T ++ V+ A+ + + +++ +++K +D
Sbjct: 177 HLVVAGT-DDAVMMVEAGAKEVP--ESEMLEGIMYGHEKVKEIVKFIED 222
>gi|319937430|ref|ZP_08011836.1| septum formation protein maf [Coprobacillus sp. 29_1]
gi|319807447|gb|EFW04051.1| septum formation protein maf [Coprobacillus sp. 29_1]
Length = 895
Score = 155 bits (390), Expect = 7e-36, Method: Composition-based stats.
Identities = 45/244 (18%), Positives = 86/244 (35%), Gaps = 18/244 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56
+R GR+ +++R ++ + GS L G+T +L+ T E + +
Sbjct: 318 IRPDGRKIDEVRPLNAQIDLLPRVHGSALFTRGETQVLSVCTLGALGEHQKIDGLGLEDQ 377
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P S G + A R+ G RAL V+ I +
Sbjct: 378 KRFMHHYNFPPYSVGETGRMGAPGRREIGHGALG----ERALAQVIPSEDEFPYTIRLVS 433
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V++++G + A+I + +AL + + + + V KG + D
Sbjct: 434 EVLESNGSSSQASICASSMALMTAGVPISNPVSGVAMGLVKKGDD---------YTILTD 484
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T G I +Q + +++ L A ++
Sbjct: 485 IQGMEDHLGDMDFKVAGTKKG-ICALQMDIKIEGITKEILQEALAQANVGRQQIMDCMLG 543
Query: 237 VISN 240
I+
Sbjct: 544 AIAE 547
Score = 107 bits (267), Expect = 1e-21, Method: Composition-based stats.
Identities = 44/237 (18%), Positives = 85/237 (35%), Gaps = 30/237 (12%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATL---EEKVPMWIRNTKHGWITAEYGMLPRS 69
+++ ++K A GS LV++ DT +L+TA + V + + G +P
Sbjct: 15 LTVEAGELAKQANGSVLVRYDDTVILSTAVAGKEPKDVDFFPLTVTYEEKLYSVGKIPGG 74
Query: 70 TGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAA 129
R GR RMI R +R + Q++ + + AA
Sbjct: 75 FLKR------EGRPSEHGTLTARMIDRPIRPLFADGFRNEVQVVNTVLSVDQNASPEMAA 128
Query: 130 ITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDA 189
+ GA +AL G +A ++ G++ G ++ + ++
Sbjct: 129 MFGASLALC-------------LSDIPFNGPIAGVNVGLIDGEFTINAGPEDMERSLINL 175
Query: 190 NFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI----SNEV 242
T I V+ A+ ++ L D+I +LI Q+ V+ ++
Sbjct: 176 EVAGTKE-AINMVEADAKE--VDEETMLNALMFGHDKIKELIAFQEKVVEACGKEKI 229
>gi|119715559|ref|YP_922524.1| ribonuclease PH [Nocardioides sp. JS614]
gi|166228299|sp|A1SGA2|RNPH_NOCSJ RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|119536220|gb|ABL80837.1| RNAse PH [Nocardioides sp. JS614]
Length = 242
Score = 155 bits (390), Expect = 7e-36, Method: Composition-based stats.
Identities = 117/239 (48%), Positives = 157/239 (65%), Gaps = 2/239 (0%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R GR ++++R I++TR +A GS LV+FG T +L A+ E VP W + + GW+TA
Sbjct: 6 REDGRADDELRPITITRHWLDHAAGSVLVEFGRTRVLCAASAAEGVPRWRKGSGLGWVTA 65
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
EY MLP ST R RE+V GR GGR+ EI R+IGR+LR+++D ALG I +DCDV+QA
Sbjct: 66 EYAMLPASTNTRSDRESVKGRIGGRTHEISRLIGRSLRAIIDYKALGENTIQLDCDVLQA 125
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
DGGTRTAAITGA+VAL D ++H+ + L G VAA+S G++ G P +DL Y E
Sbjct: 126 DGGTRTAAITGAYVALADAVEHLRST--GALTGEPLTGSVAAVSVGIIDGVPRLDLPYVE 183
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
D + D N VMT SG VEVQG+AE A F + A+L LA+ ADL +LQ++ +S
Sbjct: 184 DVRAETDMNVVMTGSGKFVEVQGTAEGAAFDRAELDALLALAEKGCADLTRLQQEALSR 242
>gi|310827652|ref|YP_003960009.1| hypothetical protein ELI_2063 [Eubacterium limosum KIST612]
gi|308739386|gb|ADO37046.1| hypothetical protein ELI_2063 [Eubacterium limosum KIST612]
Length = 692
Score = 155 bits (390), Expect = 7e-36, Method: Composition-based stats.
Identities = 45/244 (18%), Positives = 87/244 (35%), Gaps = 18/244 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
+R R+ +++R I+ GS L G+T +L+ ATL + +V + N
Sbjct: 310 IRPDNRKMDEVRPITAKIDYIPRVHGSGLFTRGETQVLSIATLGVLRDAQVLDGLSNDTE 369
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
+Y S G + R+ G RAL ++ I +
Sbjct: 370 KRYMHQYNFPGYSVGEARPMRSPGRREIGHGAL----AERALLPMIPPEEEFPYAIRVVS 425
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V+ ++G T A++ G+ +AL ++ + + + AI
Sbjct: 426 EVLSSNGSTSQASVCGSSLALMAAGVPLKKPVAGVAMGLIKEDEKLAILTD--------- 476
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T G I +Q + ++ L A+ ++ + +
Sbjct: 477 IQGMEDFLGDMDFKVAGTKDG-ITAIQMDIKIHGIDREILTQALEQARIGRMHILGIMNE 535
Query: 237 VISN 240
IS
Sbjct: 536 EISE 539
Score = 109 bits (272), Expect = 3e-22, Method: Composition-based stats.
Identities = 39/233 (16%), Positives = 86/233 (36%), Gaps = 27/233 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT----KHGWITAEYGML 66
R + V++ A+GS ++++G+T +L A +K + + G +
Sbjct: 11 RPFRVEIGEVAQLAKGSAMIRYGETSVLAIAAASKKPREGMDFFPLSVDYEEKQYAVGKI 70
Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
P R GR ++ R+I R +R + Q++ ++ D
Sbjct: 71 PGGFLKR------EGRPSEKAILNSRLIDRPIRPLFPKGFRNDVQVVTTVMSVEQDNAPE 124
Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
AA+ GA +A G +++ G++ G I++ + D
Sbjct: 125 IAAMIGASIA-------------LSISDIPFDGPTGSVAVGLIDGEFILNPTEAQREVSD 171
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
+ T I+ V+ A S++ + A + I ++ Q+++++
Sbjct: 172 LSLTVAGTKD-AIMMVEAGANE--VSEETMLEAILFAHEEIKKIVAFQEEIVA 221
>gi|237757160|ref|ZP_04585586.1| polyribonucleotide nucleotidyltransferase [Sulfurihydrogenibium
yellowstonense SS-5]
gi|237690677|gb|EEP59859.1| polyribonucleotide nucleotidyltransferase [Sulfurihydrogenibium
yellowstonense SS-5]
Length = 613
Score = 155 bits (390), Expect = 7e-36, Method: Composition-based stats.
Identities = 47/244 (19%), Positives = 79/244 (32%), Gaps = 19/244 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIR-----NTKH 56
R+ GR+ ++R I + V GS + G T T TL I
Sbjct: 312 RIDGRKPEEIRPIWIKVGVFPRNHGSAIFTRGQTQAFVTVTLGSPSEGQIEESIEAGETL 371
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P STG VS R+ G RAL ++ I +
Sbjct: 372 KRFMLHYNFPPFSTGEAKPPRPVSRREIGHGNL----AERALEPLIPSEEEFPYVIRVVS 427
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
D+++++G T A + G +AL D M+ + + +
Sbjct: 428 DILESNGSTSMATVCGGSLALFDAGVPMKKHVAGIAMGLIKSEDKFVVLSD--------- 478
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T G + +Q + +++ L A+ ++ L
Sbjct: 479 ILGDEDHLGDMDFKVAGTRDG-VTSIQMDIKVRGLTKEILQKALEQARVGRYYILDLMYQ 537
Query: 237 VISN 240
I
Sbjct: 538 AIPE 541
Score = 115 bits (288), Expect = 5e-24, Method: Composition-based stats.
Identities = 46/229 (20%), Positives = 79/229 (34%), Gaps = 27/229 (11%)
Query: 13 EISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRN----TKHGWITAEYGMLP 67
S+ +K A G+ +V+ GDT +L A + E+ I ++ YG +P
Sbjct: 14 PYSIETGYFAKQANGAVIVRQGDTAVLVAAVMSEEPQADIDFLPLTVEYREKYYAYGKIP 73
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R G+ R + R I R +R + I
Sbjct: 74 GGFVKR------EGKPSEREILVARNIDRPIRPLFPKGFYNDVIITAYTLSADDQYDPDV 127
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
I GA ALH +G +A + + G IV+ Y + + D+
Sbjct: 128 LGIVGASAALH-------------ISDIPFEGPIAGVRVCRVDGQFIVNPTYQQKAKSDL 174
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ + IV V+G A+ ++ + I LI+LQ++
Sbjct: 175 EIVVAGSKD-AIVMVEGGAKEVP--EEVILEAMLFGHQEIKKLIELQEE 220
>gi|90422008|ref|YP_530378.1| polynucleotide phosphorylase/polyadenylase [Rhodopseudomonas
palustris BisB18]
gi|122477503|sp|Q21C27|PNP_RHOPB RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|90104022|gb|ABD86059.1| Polyribonucleotide nucleotidyltransferase [Rhodopseudomonas
palustris BisB18]
Length = 715
Score = 155 bits (390), Expect = 7e-36, Method: Composition-based stats.
Identities = 50/243 (20%), Positives = 91/243 (37%), Gaps = 18/243 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +R I V A GS L G+T L TL +E+ + T
Sbjct: 316 RIDGRDSKTVRNIVAQVGVLPRAHGSALFTRGETQALVVTTLGTGEDEQYIDSLSGTYKE 375
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + R+ G + RA+ V+ + + +
Sbjct: 376 TFLLHYNFPPYSVGETGRMGGTKRREIGHGKL----AWRAIHPVLPPHHEFPYTLRVVSE 431
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ GA +AL D ++ + + +L+G A+ +
Sbjct: 432 ITESNGSSSMASVCGASLALMDAGVPLKRPTAGIAMGLILEGERFAVLSD---------I 482
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T+ G I +Q + A +++ L AKD ++
Sbjct: 483 LGDEDHLGDMDFKVAGTEQG-ITSLQMDIKIAGITEEIMKVALGQAKDGRIHILGEMSKA 541
Query: 238 ISN 240
++N
Sbjct: 542 LTN 544
Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats.
Identities = 34/235 (14%), Positives = 78/235 (33%), Gaps = 28/235 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTKHGWITAEYGML 66
R + L +++ A+G+ + +G+T +L T + +E V + T G +
Sbjct: 14 RPLKLETGKIARQADGAVVATYGETVVLATVVAAKSAKEGVDFLPLTVDYIEKTYAAGRI 73
Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
P R GR + + R+I R +R + Q+I+ +
Sbjct: 74 PGGYFKR------EGRPTEKETLVSRLIDRPIRPLFVDGWRNETQVIVTVLSHDMENDPD 127
Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
A+ + A KG + A G + +++ E
Sbjct: 128 ILALVASSAA-------------LTLSGAPFKGPIGAARVGFINDEYVLNPTLDEMVDTQ 174
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
+D T ++ V+ A+ ++D + +++ + ++ +
Sbjct: 175 LDLVVAGTAD-AVLMVESEAKE--LNEDIMLGAVMFGHRHFQPVVQAIIE-LAEK 225
>gi|169831097|ref|YP_001717079.1| 3' exoribonuclease [Candidatus Desulforudis audaxviator MP104C]
gi|257096687|sp|B1I393|PNP_DESAP RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|169637941|gb|ACA59447.1| 3' exoribonuclease [Candidatus Desulforudis audaxviator MP104C]
Length = 741
Score = 155 bits (390), Expect = 7e-36, Method: Composition-based stats.
Identities = 52/242 (21%), Positives = 99/242 (40%), Gaps = 18/242 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
+RL GR +++R+IS+ V GS L + G T +L+ TL +E++ + +
Sbjct: 324 VRLDGRAFDEIRDISVEVNVLPRTHGSGLFQRGQTQVLSVLTLGAVRDEQILDGLDTQET 383
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y STG + R+ G GRAL +V+ + I I
Sbjct: 384 KRFMHHYNFPSFSTGEARPIRSAGRREIGHGAL----AGRALEAVLPGEDVFPYTIRIVS 439
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V+ ++G T A++ G+ +AL D ++ + + +G A+
Sbjct: 440 EVLSSNGSTSMASVCGSCLALMDAGVPIKAPVAGIAMGLIKEGDEVAVLTD--------- 490
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T+ G + +Q + A + + + A++ ++ K+
Sbjct: 491 IQGTEDHLGDMDFKVAGTEQG-VTALQMDIKIAGITPEILAQAMAQAREARLYILDRYKE 549
Query: 237 VI 238
VI
Sbjct: 550 VI 551
Score = 89.1 bits (219), Expect = 5e-16, Method: Composition-based stats.
Identities = 47/225 (20%), Positives = 79/225 (35%), Gaps = 26/225 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTAT---LEEKVPMWIRNTKHGWITAEYGMLP 67
R S+ V+ A L ++G+T +L AT L E + + + G +P
Sbjct: 16 RTFSVDIGRVAGQASAGVLARYGETVVLVAATREALREGLDFFPLTVDYEERHYAVGRIP 75
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
S R GR G ++ R+I R++R + + ++ + D
Sbjct: 76 GSFMKR------EGRPGEKAILAARLIDRSIRPLFPRNFTQDVHVVALVMSVDQDCSPAI 129
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
AI GA VA G V A+ GM+ G +V+ +D D+
Sbjct: 130 TAILGASVA-------------LTLSDIPFAGPVGAVIMGMVDGQLVVNPTLEQDEKSDL 176
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
T I V+ A+ S++ L A I + +
Sbjct: 177 HLTVAGTRE-AINMVEAGAKE--VSEEIIVEALTKAHAEIQRIAE 218
>gi|86157534|ref|YP_464319.1| polynucleotide phosphorylase/polyadenylase [Anaeromyxobacter
dehalogenans 2CP-C]
gi|85774045|gb|ABC80882.1| Polyribonucleotide nucleotidyltransferase [Anaeromyxobacter
dehalogenans 2CP-C]
Length = 749
Score = 155 bits (390), Expect = 7e-36, Method: Composition-based stats.
Identities = 45/242 (18%), Positives = 88/242 (36%), Gaps = 18/242 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +R+I+ + GS L G+T L TL +E+ +
Sbjct: 352 RIGGRGMADIRKITCEVGLLPRVHGSSLFTRGETQALVATTLGTAEDEQRVEMLTGMVFK 411
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + R+ G RALR+V+ + + D
Sbjct: 412 KFMLHYNFPPFSVGEVKFLRSPGRREIGHGAL----AERALRAVMPPEDQFPYTVRVVSD 467
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+++++G + A++ G ++L D ++ + + +G AI +
Sbjct: 468 IMESNGSSSMASVCGGCLSLMDAGVPIKAPVAGIAMGLIKEGEKIAILSD---------I 518
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T +G I +Q + +++ L+ A + ++
Sbjct: 519 LGDEDHLGDMDFKVCGTAAG-ITSIQMDIKIGGVTREILEQALSQAAEGRKHILGEMAKA 577
Query: 238 IS 239
+S
Sbjct: 578 LS 579
Score = 96.8 bits (239), Expect = 2e-18, Method: Composition-based stats.
Identities = 47/229 (20%), Positives = 79/229 (34%), Gaps = 27/229 (11%)
Query: 13 EISLTRR-VSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKHGWITAEYGMLP 67
E+ L V+K A GS V+ GD+ +L TA E + + + G +P
Sbjct: 42 EVLLETGKVAKQAHGSVWVRLGDSIVLVTAVSAAEKKEGIDFFPLTVDYQEKLFAAGRVP 101
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
S R GR + R++ R+ R + Q+I + T
Sbjct: 102 GSFFRR------EGRPTEKETLTSRLVDRSCRPLFAEGYSNETQVIATVISFDQENDTDV 155
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
A+TGA ALH G +A + + G + + + + D+
Sbjct: 156 LALTGASAALH-------------ISDIPFGGPIAGVRVARVGGQLVANPTLAQRADADL 202
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
D + IV V+G A+ S+ L + + L+ Q
Sbjct: 203 D-VVMAASRDAIVMVEGGAQE--VSEAVMIEALLFGQAAVQPLLDAQDA 248
>gi|85714171|ref|ZP_01045160.1| polyribonucleotide nucleotidyltransferase [Nitrobacter sp. Nb-311A]
gi|85699297|gb|EAQ37165.1| polyribonucleotide nucleotidyltransferase [Nitrobacter sp. Nb-311A]
Length = 723
Score = 155 bits (390), Expect = 7e-36, Method: Composition-based stats.
Identities = 50/243 (20%), Positives = 91/243 (37%), Gaps = 18/243 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +R I V A GS L G+T + TL +E+ + T
Sbjct: 321 RIDGRDVKTVRAIVAEVGVLPRAHGSALFTRGETQAMVVTTLGTGEDEQYIDSLSGTYKE 380
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + R+ G + RA+ V+ I + +
Sbjct: 381 TFLLHYNFPPYSVGETGRLGGTKRREIGHGKL----AWRAIHPVLPPHHEFPYTIRVVSE 436
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A + G+ +AL D ++ + + +L+G A+ +
Sbjct: 437 ITESNGSSSMATVCGSSLALMDAGVPLKRPTAGIAMGLILEGSRYAVLSD---------I 487
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T+SG I +Q + A +++ L AKD ++
Sbjct: 488 LGDEDHLGDMDFKVAGTESG-ITSLQMDIKIAGITEEIMKVALAQAKDGRIHILGEMAKA 546
Query: 238 ISN 240
++N
Sbjct: 547 LTN 549
Score = 110 bits (275), Expect = 2e-22, Method: Composition-based stats.
Identities = 37/235 (15%), Positives = 76/235 (32%), Gaps = 28/235 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTKHGWITAEYGML 66
R + L +++ A+G+ + +G+T +L T T E V + T G +
Sbjct: 19 RPLKLETGKIARQADGAVIASYGETVVLATVVAAKTPREGVDFLPLTVDYQEKTYAAGRI 78
Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
P R GR + + R+I R +R + Q+I+ +
Sbjct: 79 PGGYFKR------EGRPTEKETLVSRLIDRPIRPLFADGWRNETQVIVTVLSHDMENDPD 132
Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
A+ A A KG + A G + +++ E
Sbjct: 133 VLAMVAASAA-------------LTLSGVPFKGPIGAARVGFMNDEYVLNPTLDEMVDTR 179
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
++ T ++ V+ A+ S+D + +I + ++ +
Sbjct: 180 LELVVAGTAD-AVLMVESEAKE--LSEDIMLGAVMFGHRHFQPVINAIIE-LAEK 230
>gi|289766578|ref|ZP_06525956.1| polyribonucleotide nucleotidyltransferase [Fusobacterium sp. D11]
gi|289718133|gb|EFD82145.1| polyribonucleotide nucleotidyltransferase [Fusobacterium sp. D11]
Length = 703
Score = 155 bits (390), Expect = 7e-36, Method: Composition-based stats.
Identities = 47/243 (19%), Positives = 90/243 (37%), Gaps = 18/243 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR ++R + V GS L G+T L TL +E++ + +
Sbjct: 328 RVDGRTTTEIRPLDAQINVLPIPHGSALFTRGETQSLAITTLGTKEDEQLIDDLEKEYYK 387
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + + R+ G RALR V+ I + +
Sbjct: 388 KFYLHYNFPPYSVGEVGRMGSPGRRELGHGSL----AERALRYVIPTEEEFPYTIRVVSE 443
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A+I G ++L +++ + + +G + ++
Sbjct: 444 ITESNGSSSQASICGGSLSLMAAGVPIKEHVAGIAMGLIKEGEEFTVLTDIM-------- 495
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T SG I +Q + +++ LN A ++++L
Sbjct: 496 -GLEDHLGDMDFKVAGTKSG-ITALQMDIKITGITEEIMRIALNQAHQARLEILELMNST 553
Query: 238 ISN 240
IS
Sbjct: 554 ISK 556
Score = 100 bits (248), Expect = 2e-19, Method: Composition-based stats.
Identities = 38/230 (16%), Positives = 79/230 (34%), Gaps = 27/230 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGML 66
R + ++ +S+ + G+ ++++GDT LL+TA + + + G
Sbjct: 18 RTLKVSTGKISRQSSGAIVIQYGDTVLLSTANRSKEARKGADFFPLTVDYIEKFYSTGKF 77
Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
P R GR + + R+I R +R + I+
Sbjct: 78 PGGFNKR------EGRPSTNATLVARLIDRPIRPMFPDGFNYDVHIVNTVLSYDEINTPD 131
Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
I G+ +AL G VA ++ G G I++ E +
Sbjct: 132 YLGIIGSSLALM-------------ISDIPFLGPVAGVTVGYKNGEFILNPSPKELEESE 178
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+D + T + V+ A+ ++ + A + I + + Q++
Sbjct: 179 LDLSVAGTKE-AVNMVEAGAKE--LDEETMLKAIMFAHENIKKICEFQEE 225
>gi|319794672|ref|YP_004156312.1| polyribonucleotide nucleotidyltransferase [Variovorax paradoxus
EPS]
gi|315597135|gb|ADU38201.1| polyribonucleotide nucleotidyltransferase [Variovorax paradoxus
EPS]
Length = 775
Score = 155 bits (390), Expect = 7e-36, Method: Composition-based stats.
Identities = 42/243 (17%), Positives = 89/243 (36%), Gaps = 18/243 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +R I + V GS L G+T L TL + + +
Sbjct: 317 RIDGRDTRTVRPIEIRNSVLPRTHGSALFTRGETQALVITTLGTERDAQRIDALAGEYED 376
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y M P +TG + + R+ G + RAL +V+ + + +
Sbjct: 377 RFLFHYNMPPFATGEVGRMGSTKRREIGHGRL----AKRALVAVLPTKEEFPYTVRVVSE 432
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ G +++ D M+ + + + + A+ +
Sbjct: 433 ITESNGSSSMASVCGGCLSMMDAGVPMKAHVAGIAMGLIKEDNRFAVLTD---------I 483
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T +G I +Q + +++ L AK+ ++ ++
Sbjct: 484 LGDEDHLGDMDFKVAGTTNG-ITALQMDIKIQGITKEIMQVALAQAKEARMHILGKMQEA 542
Query: 238 ISN 240
+
Sbjct: 543 MGE 545
Score = 89.1 bits (219), Expect = 5e-16, Method: Composition-based stats.
Identities = 35/233 (15%), Positives = 71/233 (30%), Gaps = 31/233 (13%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT----KHGWITAEYGMLPR 68
+ + V++ A G+ LV T +L T + + T G +P
Sbjct: 18 VVMETGEVARQANGAVLVDIDGTVILATVVASKSAKPGQDFFPLTVDYIEKTYAAGKIPG 77
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
S R + R+I R +R + L ++I + + A
Sbjct: 78 SFFKR------EAKPSEHETLTSRLIDRPIRPLFPEGFLNEVHVVIHTVSLNPEVDADIA 131
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+ G A G + A G + G +++ +D
Sbjct: 132 AMIGVSAA-------------LSISGIPFSGPIGAARVGYINGQYVLNPGQTARKDSQMD 178
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKD----RIADLIKLQKDV 237
T + ++ V+ A++ S++ + + I + L +D
Sbjct: 179 LVVAGTQA-AVLMVESEAQQ--LSEEIMLGGVVFGHEQAGIAINAIHDLVRDA 228
>gi|313901029|ref|ZP_07834517.1| polyribonucleotide nucleotidyltransferase [Clostridium sp. HGF2]
gi|312953987|gb|EFR35667.1| polyribonucleotide nucleotidyltransferase [Clostridium sp. HGF2]
Length = 736
Score = 155 bits (390), Expect = 7e-36, Method: Composition-based stats.
Identities = 45/244 (18%), Positives = 88/244 (36%), Gaps = 16/244 (6%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
+R GR+ +++R + + A GS L G+T +L+ TL + ++ + +
Sbjct: 330 VRPDGRKVDEIRPLDSQVDILPRAHGSALFTRGETQVLSVTTLGPMNDNQIIDDLTEVET 389
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P S G + + R+ G RAL V+ I
Sbjct: 390 KRFMHHYNFPPYSVGETGRMGSPGRREIGHGALG----ERALSQVLPSVEDFPYTIRTVA 445
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V +++G + A+I ++L ++ + ++ + D
Sbjct: 446 EVTESNGSSSQASICAGTMSLMAAGVPIKAPVAGIAMGLIMDEENG-------KYTVLTD 498
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T G I +Q + +++ F L AK A +++
Sbjct: 499 IQGMEDHFGDMDFKVAGTSKG-ITALQMDIKVTGITREVFEEALAQAKVARAQILENMMA 557
Query: 237 VISN 240
IS
Sbjct: 558 AISE 561
Score = 106 bits (265), Expect = 2e-21, Method: Composition-based stats.
Identities = 47/244 (19%), Positives = 86/244 (35%), Gaps = 35/244 (14%)
Query: 1 MRLS--GRQENQMREISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK-- 55
RL GR +++ V+K A G+ LV++ DT +L+TAT ++ I
Sbjct: 17 FRLDFCGRG------LTVETGEVAKQAGGAVLVRYDDTVVLSTATASKQAKEGIDFFPLT 70
Query: 56 --HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQII 113
G +P R GR + RMI R +R + Q++
Sbjct: 71 VLFEEKLYSVGKIPGGFLRR------EGRPSEHATLTARMIDRPIRPLFADGFRNEVQVV 124
Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP 173
+ D A+ GA +AL G +A + G + G
Sbjct: 125 NTVLSVDQDCTPEMTAMFGASLALC-------------VSDIPFNGPIAGVMVGRVDGEY 171
Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
I++ + D++ T + V+ A+ S++ + + I L+
Sbjct: 172 IINPTPEQLEKSDINLTVAGTKY-AVNMVESGAKE--VSEEAMLGAIMFGHEHIKQLVAF 228
Query: 234 QKDV 237
Q+++
Sbjct: 229 QEEI 232
>gi|226946303|ref|YP_002801376.1| polynucleotide phosphorylase/polyadenylase [Azotobacter vinelandii
DJ]
gi|259534109|sp|C1DFK5|PNP_AZOVD RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|226721230|gb|ACO80401.1| polyribonucleotide nucleotidyltransferase [Azotobacter vinelandii
DJ]
Length = 702
Score = 155 bits (390), Expect = 7e-36, Method: Composition-based stats.
Identities = 45/243 (18%), Positives = 90/243 (37%), Gaps = 18/243 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +R + + V GS L G+T L ATL + +V + +
Sbjct: 317 RIDGRDNRTVRPLKIEVGVLPKTHGSALFTRGETQALVVATLGTARDAQVLDTLEGERKD 376
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + + R+ G + R +++++ + + +
Sbjct: 377 SFMLHYNFPPFSVGECGRMGSAGRREIGHGRL----ARRGVQAMLPKDDSFPYTVRVVSE 432
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ GA +AL D M+ + V +G A+ +
Sbjct: 433 ITESNGSSSMASVCGASLALMDAGVPMKAPVAGIAMGLVKEGEKFAVLTD---------I 483
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T +G + +Q + +++ LN A + ++ V
Sbjct: 484 LGDEDHLGDMDFKVAGTAAG-VTALQMDIKIQGITEEIMEIALNQALEARLHILGQMGQV 542
Query: 238 ISN 240
I
Sbjct: 543 IGQ 545
Score = 86.1 bits (211), Expect = 4e-15, Method: Composition-based stats.
Identities = 35/235 (14%), Positives = 73/235 (31%), Gaps = 39/235 (16%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGN 72
++L +++ A G+ L T++++V + + G P S
Sbjct: 15 VTLETGRIARQASGAVL-----------VTIDDEVAVLVTVVAAKQADPGKGFFPLSVHY 63
Query: 73 RVK----------REAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQAD 122
+ K GR + R+I R +R + + Q+I
Sbjct: 64 QEKTYAAGRIPGGFFKREGRPSEKETLTSRLIDRPIRPLFPEGFMNEVQVICTVLSTSKK 123
Query: 123 GGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY-PIVDLDYGE 181
A++ G A G + A G +++ Y +
Sbjct: 124 TDPDIASMIGTSAA-------------LAVSGIPFNGPIGAARVGFHEETGYLLNPSYEQ 170
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+D T+S ++ V+ AE ++D + A + +I+ K+
Sbjct: 171 LKASRLDMVVAGTES-AVLMVESEAEE--LTEDQMLGAVLFAHEEFQAVIQAIKE 222
>gi|306820072|ref|ZP_07453720.1| polyribonucleotide nucleotidyltransferase [Eubacterium yurii subsp.
margaretiae ATCC 43715]
gi|304551850|gb|EFM39793.1| polyribonucleotide nucleotidyltransferase [Eubacterium yurii subsp.
margaretiae ATCC 43715]
Length = 690
Score = 155 bits (390), Expect = 8e-36, Method: Composition-based stats.
Identities = 45/242 (18%), Positives = 83/242 (34%), Gaps = 18/242 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
+R R + ++R I V GS + G T +L+ ATL E + + +
Sbjct: 311 VRPDNRAQEEIRPIWCEAGVLPRTHGSAIFTRGQTQVLSVATLAGLSEAQTIDGLDEEEE 370
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y S G R+ G RA+ ++ I +
Sbjct: 371 RRYMHHYNFPAFSVGEARASRGPGRREIGHGAL----AQRAIEPLLPSEEEFPYTIRVVS 426
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V+ ++G T A++ G+ + L D M+D + + I
Sbjct: 427 EVMSSNGSTSQASVCGSTLCLLDAGVPMKDMVAGIAMGLIKDEEDVVILSD--------- 477
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T+ G I +Q + + +D L A++ ++ +
Sbjct: 478 IQGMEDFLGDMDFKVAGTEKG-ITAIQMDIKISGIDEDILKRALAQAREGRLHILGEMRK 536
Query: 237 VI 238
VI
Sbjct: 537 VI 538
Score = 98.0 bits (242), Expect = 1e-18, Method: Composition-based stats.
Identities = 43/236 (18%), Positives = 85/236 (36%), Gaps = 28/236 (11%)
Query: 12 REISLTRRVSKY-AEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGML 66
R +++ A G+C +++GDT LL TAT +E + + + G +
Sbjct: 12 RTLTVETGKLAQMANGACTLRYGDTVLLVTATNSAKPKEGIDFFPLSVDFEEKLYSAGKI 71
Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
P S R G+ ++ R+I R +R + Q++ + D
Sbjct: 72 PGSFIRR------EGKPSEKAILTSRLIDRPIRPLFPKGYRNDVQVVATVLSVDIDHNPD 125
Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
T A+ G+ S G ++S G++ G I++ + + D
Sbjct: 126 TIAMIGS-------------SIALSISSIPFNGPTGSVSVGLVDGQFIINPTFEQREKSD 172
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNEV 242
+ T I+ V+ + S++ + A + I + I+NE+
Sbjct: 173 MYLVVSGTKD-AIMMVEAGSNE--VSEEVMLNAILFAHEEIKKICDFV-QSIANEI 224
>gi|237742790|ref|ZP_04573271.1| polyribonucleotide nucleotidyltransferase [Fusobacterium sp.
4_1_13]
gi|256846116|ref|ZP_05551574.1| polyribonucleotide nucleotidyltransferase [Fusobacterium sp.
3_1_36A2]
gi|229430438|gb|EEO40650.1| polyribonucleotide nucleotidyltransferase [Fusobacterium sp.
4_1_13]
gi|256719675|gb|EEU33230.1| polyribonucleotide nucleotidyltransferase [Fusobacterium sp.
3_1_36A2]
Length = 699
Score = 155 bits (390), Expect = 8e-36, Method: Composition-based stats.
Identities = 46/243 (18%), Positives = 90/243 (37%), Gaps = 18/243 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR ++R + V GS L G+T L TL +E++ + +
Sbjct: 324 RVDGRTTTEIRPLDAQINVLPVPHGSALFTRGETQSLAITTLGTKEDEQLIDDLEKEYYK 383
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + + R+ G RAL V+ I + +
Sbjct: 384 KFYLHYNFPPYSVGEVGRMGSPGRRELGHGSL----AERALSYVIPSEEEFPYTIRVVSE 439
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A+I G ++L +++ + + +G + ++
Sbjct: 440 ITESNGSSSQASICGGSLSLMSAGVPIKEHVAGIAMGLIKEGEEFTVLTDIM-------- 491
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T SG I +Q + +++ LN A + +++L +
Sbjct: 492 -GLEDHLGDMDFKVAGTKSG-ITALQMDIKITGITEEIMRIALNQAHEARIQILELMNNT 549
Query: 238 ISN 240
IS
Sbjct: 550 ISK 552
Score = 98.8 bits (244), Expect = 6e-19, Method: Composition-based stats.
Identities = 37/230 (16%), Positives = 78/230 (33%), Gaps = 27/230 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGML 66
R + ++ +S+ + G+ ++++GDT LL+TA + + + G
Sbjct: 14 RTLKVSTGKISRQSSGAIVIQYGDTVLLSTANRSKDARKGADFFPLTVDYIEKFYSSGKF 73
Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
P R GR + + R+I R +R + I+
Sbjct: 74 PGGFNKR------EGRPSTNATLVARLIDRPIRPMFPDGFNYDVHIVNTVLSYDEINIPD 127
Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
+ G+ +AL G VA++ G G I++ E +
Sbjct: 128 YLGVIGSSLALM-------------ISDIPFLGPVASVIVGYKNGEFILNPSPKELEESE 174
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+D T + V+ A+ ++ + A + I + + Q++
Sbjct: 175 LDLIVAGTKE-AVNMVEAGAKE--LDEETMLKAIMFAHENIKKICEFQEE 221
>gi|167754065|ref|ZP_02426192.1| hypothetical protein ALIPUT_02353 [Alistipes putredinis DSM 17216]
gi|167658690|gb|EDS02820.1| hypothetical protein ALIPUT_02353 [Alistipes putredinis DSM 17216]
Length = 737
Score = 155 bits (390), Expect = 8e-36, Method: Composition-based stats.
Identities = 50/243 (20%), Positives = 88/243 (36%), Gaps = 16/243 (6%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
RL GR+ +++R I A GS + G+T LTT TL +EKV +
Sbjct: 324 RLDGRRTDEIRPIWCEVGYLPAAHGSAIFTRGETQSLTTVTLGTKMDEKVKDEVLVQGTE 383
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P STG +S R+ G RAL+ +V + + + D
Sbjct: 384 QFVLHYNFPPFSTGEAKAARGLSRREIGHGHL----AWRALKPMVPVGEENPYAVRVVSD 439
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+++++G + A + +AL D ++ + + + + D+
Sbjct: 440 ILESNGSSSMATVCAGTLALMDAGVKLKKPVSGIAMGLISD-------SATGRWAVLSDI 492
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T G I Q + S + L A+ ++ +
Sbjct: 493 LGDEDHLGDMDFKVTGTKDG-ITATQMDIKVDGLSYEVLAKALEQARVGRMHILGKLTEC 551
Query: 238 ISN 240
I+
Sbjct: 552 IAE 554
Score = 101 bits (251), Expect = 9e-20, Method: Composition-based stats.
Identities = 43/241 (17%), Positives = 79/241 (32%), Gaps = 28/241 (11%)
Query: 7 QENQMREISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----HGWITA 61
REI + ++K A+GS +VK GDT LL T + + A
Sbjct: 15 TLADGREIMIETGKLAKQADGSVVVKMGDTMLLGTVVAAKDAKPDTDFMPLQVEYKEKYA 74
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
G P R G+ + R+I RALR + +
Sbjct: 75 ACGRYPGGFMKR------EGKANDSEILVARLIDRALRPLFPSDYHAEVYVT-------- 120
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
I+ D L + + G ++ + + G +++ + +
Sbjct: 121 -----VNLISADKDIQPDALAGLAASAALAVSDIPFGGPISEVRVARIGGQYVINPAFSQ 175
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
D+D T +I+ V+ E S++ + A + I +Q + +S E
Sbjct: 176 MQDADLDIMVGGTID-NILMVE--GEMKEVSEEVMLGAIKFAHEEIKKHCAVQIE-LSKE 231
Query: 242 V 242
+
Sbjct: 232 L 232
>gi|319942267|ref|ZP_08016582.1| ribonuclease PH [Sutterella wadsworthensis 3_1_45B]
gi|319804140|gb|EFW01040.1| ribonuclease PH [Sutterella wadsworthensis 3_1_45B]
Length = 277
Score = 155 bits (390), Expect = 8e-36, Method: Composition-based stats.
Identities = 118/240 (49%), Positives = 156/240 (65%), Gaps = 2/240 (0%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R GR + +R + +TRR +KYAEGS L+ GDTH+L TA++ VP ++R GW+TA
Sbjct: 35 RPDGRAVDALRPVEITRRFTKYAEGSVLMCAGDTHVLCTASVTVGVPNFLRGKGEGWVTA 94
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
EYG+LPRSTG R REA G+Q GR+QEIQR+IGR+LR+VVD LG I IDCDV+QA
Sbjct: 95 EYGLLPRSTGTRTDREAARGKQTGRTQEIQRLIGRSLRAVVDRKKLGEHTIQIDCDVLQA 154
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
DGGTR A+ITGAW+AL D + M + V+A+S GM G P++DL+Y E
Sbjct: 155 DGGTRCASITGAWIALRDAVDWMLAK--GMISEDPILAQVSAVSVGMWSGEPVLDLNYAE 212
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
DS D D N VMT +G VE+QG+AE FS+ +L LAK A+L Q+ ++ +
Sbjct: 213 DSASDTDMNVVMTSAGKYVEIQGTAEGDPFSEGDLAKLLALAKKGNAELAAFQRKALTEK 272
>gi|89056519|ref|YP_511970.1| polynucleotide phosphorylase/polyadenylase [Jannaschia sp. CCS1]
gi|123094095|sp|Q28K17|PNP_JANSC RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|88866068|gb|ABD56945.1| Polyribonucleotide nucleotidyltransferase [Jannaschia sp. CCS1]
Length = 706
Score = 155 bits (390), Expect = 8e-36, Method: Composition-based stats.
Identities = 45/243 (18%), Positives = 93/243 (38%), Gaps = 17/243 (6%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +++R+I +V GS L G+T L TL +E+ +
Sbjct: 318 RIDGRALDEVRDIVSETKVLPRTHGSALFTRGETQGLVVTTLGTGDDEQFIDALHGNFKS 377
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + R+ G + RAL++V+ + + + +
Sbjct: 378 NFLLHYNFPPYSVGEAGRVGPPGRREIGHGKL----AWRALQAVLPAATDFPYTVRVVSE 433
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ G +++ D ++ + VL+ + + D+
Sbjct: 434 ITESNGSSSMASVCGGSLSMMDAGVPLKAPVAGVAMGLVLEDDGS--------YGILTDI 485
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T++G I +Q + A +Q+ L AK ++
Sbjct: 486 LGDEDHLGDMDFKVAGTEAG-ITSLQMDIKVAGITQEIMEKALEQAKAGRLHILAEMAKA 544
Query: 238 ISN 240
++
Sbjct: 545 VTE 547
Score = 106 bits (264), Expect = 3e-21, Method: Composition-based stats.
Identities = 31/228 (13%), Positives = 63/228 (27%), Gaps = 25/228 (10%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGN 72
++L V++ A+GS + G+T ++ T + + E
Sbjct: 16 LTLETGRVARQADGSVIATLGETSVMANVTFAKSPKPGMDFFPLTVHYQEKYYAAGKVP- 74
Query: 73 RVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITG 132
R + R+I R +R + ++ A+
Sbjct: 75 -GGFFKREARPTEKETLTARLIDRPIRPLFVPGFKNETLVMCTVLSHDLVNDPDMVAMIA 133
Query: 133 AWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDST------ID 186
A A +G +A G G I++ + +
Sbjct: 134 ASAA-------------LTISGAPFRGPIAGCRVGFEDGEYILNPEIDDMHDLRNNPEQR 180
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
+D T ++ V+ A ++ + A D I +I L
Sbjct: 181 LDLVVAGTKD-AVMMVESEAYE--LTEAEMLGAVKFAHDSIQPVIDLI 225
>gi|325473489|gb|EGC76684.1| polyribonucleotide nucleotidyltransferase [Treponema denticola
F0402]
Length = 698
Score = 155 bits (390), Expect = 8e-36, Method: Composition-based stats.
Identities = 44/243 (18%), Positives = 84/243 (34%), Gaps = 18/243 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
+R+ GR +R I+ V GS + G+T L T+ +E++ I +
Sbjct: 313 LRVDGRGTKDIRPITCEIGVLPRPHGSAVFTRGETQSLGVVTIGTVFDEQIYDDIEGDRR 372
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P S G + R+ G R+L +V + +
Sbjct: 373 ENFILHYNFPPFSVGEVGRLGTGR-REIGHGNL----AHRSLYPMVPEREKFPYTVRVVS 427
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V++++G + A + +++ M+ + + + G + D
Sbjct: 428 EVLESNGSSSMATVCSGTLSMLHAGVPMKKPVAGIAMGLITE--------GNDRYAILSD 479
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T G I Q + A S + L AK+ ++ +
Sbjct: 480 ILGEEDHLGDMDFKVAGTADG-ITGFQMDIKIAGVSPEIMKNALAQAKEGRMHILGIMNQ 538
Query: 237 VIS 239
IS
Sbjct: 539 CIS 541
Score = 91.8 bits (226), Expect = 7e-17, Method: Composition-based stats.
Identities = 43/229 (18%), Positives = 76/229 (33%), Gaps = 27/229 (11%)
Query: 13 EISLTRRV-SKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT----KHGWITAEYGMLP 67
++ L +K A GS ++ + +L T + + + G +P
Sbjct: 13 DLILETGYLAKQANGSIYAEYAGSAILATICASGQAQEGLDYVPLTVDYNEKYYAAGKIP 72
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R GR + + R+I R +R + + Q++ C
Sbjct: 73 GGFIKR------EGRPKDKEILVSRLIDRPMRPLFNKEFGREIQLVPTCISTDMINPPDI 126
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
A+ + A+H G VAA G I++ + + T D+
Sbjct: 127 LAVIASSAAVH-------------ISDIPFDGPVAAARVAYKNGEYIINPTFSQIETADM 173
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ T G I V+G A S+ L A + I L K+Q+D
Sbjct: 174 EIVVAGTKEG-ITMVEGGANE--VSEAVMLTALEKAHEMIKALCKMQED 219
>gi|193212209|ref|YP_001998162.1| polynucleotide phosphorylase/polyadenylase [Chlorobaculum parvum
NCIB 8327]
gi|226702632|sp|B3QM09|PNP_CHLP8 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|193085686|gb|ACF10962.1| Polyribonucleotide nucleotidyltransferase [Chlorobaculum parvum
NCIB 8327]
Length = 732
Score = 155 bits (390), Expect = 8e-36, Method: Composition-based stats.
Identities = 47/243 (19%), Positives = 86/243 (35%), Gaps = 18/243 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
RL GR Q+R IS+ + A GS L G+T L T TL + + + + K
Sbjct: 331 RLDGRTLEQVRPISIELGLIPRAHGSALFTRGETQALVTLTLGTKKDAQSVDTLTDDKDK 390
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + R+ G RA++ V+ + + D
Sbjct: 391 RFMLHYNFPPFSVGETGRVGGTGRREIGHGNL----AERAIKMVMPAEQEFPYTVRLVSD 446
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+++++G + A++ G +A D ++ + + + +G A+ +
Sbjct: 447 ILESNGSSSMASVCGGTLAAMDGGIPLKKPVSGIAMGLIKEGDRYAVLSD---------I 497
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T G I Q + L A+ ++ + +
Sbjct: 498 LGNEDHLGDMDFKVSGTRDG-ITACQMDIKIDGLDYHILETALEQARKGRLHILDVMTEA 556
Query: 238 ISN 240
I
Sbjct: 557 IPE 559
Score = 114 bits (286), Expect = 7e-24, Method: Composition-based stats.
Identities = 46/235 (19%), Positives = 79/235 (33%), Gaps = 29/235 (12%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT-----KHGWITAEYGMLP 67
I++ ++K A+GS +V+ DT +L T + P ++ ++ + G P
Sbjct: 15 ITIETGKMAKQADGSAVVRLNDTMVLATVVSSKTPPPPSQDFFPLQVEYREKYSAAGKFP 74
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R GR + R+I RALR + QIII
Sbjct: 75 GGFFKR------EGRPSEKEILSARLIDRALRPLFPDGYYQETQIIISVISSDTINDADV 128
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
A A+ ++ + G + G IV+ D E D+
Sbjct: 129 LGGIAASAAIM-------------VSDIPFANPMSEVRVGRINGQFIVNPDTEELQRSDL 175
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNEV 242
D T+ I ++ E S+ + + I L QK+ ++ EV
Sbjct: 176 DICIGGTED-TICMLE--GEMKEISEAEMLDAIKFGHEAIKKLCAFQKE-LAAEV 226
>gi|42526551|ref|NP_971649.1| polynucleotide phosphorylase/polyadenylase [Treponema denticola
ATCC 35405]
gi|81412546|sp|Q73NW1|PNP_TREDE RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|41816744|gb|AAS11530.1| polyribonucleotide nucleotidyltransferase [Treponema denticola ATCC
35405]
Length = 698
Score = 154 bits (389), Expect = 8e-36, Method: Composition-based stats.
Identities = 44/243 (18%), Positives = 84/243 (34%), Gaps = 18/243 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
+R+ GR +R I+ V GS + G+T L T+ +E++ I +
Sbjct: 313 LRVDGRGTKDIRPITCEIGVLPRPHGSAVFTRGETQSLGVVTIGTVFDEQIYDDIEGDRR 372
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P S G + R+ G R+L +V + +
Sbjct: 373 ENFILHYNFPPFSVGEVGRLGTGR-REIGHGNL----AHRSLYPMVPEREKFPYTVRVVS 427
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V++++G + A + +++ M+ + + + G + D
Sbjct: 428 EVLESNGSSSMATVCSGTLSMLHAGVPMKKPVAGIAMGLITE--------GNDRYAILSD 479
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T G I Q + A S + L AK+ ++ +
Sbjct: 480 ILGEEDHLGDMDFKVAGTADG-ITGFQMDIKIAGVSPEIMKNALAQAKEGRMHILGIMNQ 538
Query: 237 VIS 239
IS
Sbjct: 539 CIS 541
Score = 93.8 bits (231), Expect = 2e-17, Method: Composition-based stats.
Identities = 43/229 (18%), Positives = 77/229 (33%), Gaps = 27/229 (11%)
Query: 13 EISLTRRV-SKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT----KHGWITAEYGMLP 67
++ L +K A GS ++ + +L T + + + G +P
Sbjct: 13 DLILETGYLAKQANGSIYAEYAGSAILATICASGQAQEGLDYVPLTVDYNEKYYAAGKIP 72
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R GR + + R+I R +R + + Q++ C
Sbjct: 73 GGFIKR------EGRPKDKEILVSRLIDRPMRPLFNKEFGREIQLVPTCISTDMINPPDI 126
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
A+ + A+H G VAA G I++ + + T D+
Sbjct: 127 LAVIASSAAVH-------------ISDIPFDGPVAAARVAYKNGEYIINPTFSQIETADM 173
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ T G I V+G A S++ L A + I L K+Q+D
Sbjct: 174 EIVVAGTKEG-ITMVEGGANE--VSEEVMLTALEKAHEMIKSLCKMQED 219
>gi|297617194|ref|YP_003702353.1| polyribonucleotide nucleotidyltransferase [Syntrophothermus
lipocalidus DSM 12680]
gi|297145031|gb|ADI01788.1| polyribonucleotide nucleotidyltransferase [Syntrophothermus
lipocalidus DSM 12680]
Length = 717
Score = 154 bits (389), Expect = 8e-36, Method: Composition-based stats.
Identities = 45/244 (18%), Positives = 93/244 (38%), Gaps = 18/244 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56
+R+ GR+ N++R +S + GS L G T +L+ T EE++ + +
Sbjct: 312 IRVDGRRLNEIRPVSCEVGILPRTHGSGLFTRGQTQVLSVTTLGAVGEEQILDGLGVEES 371
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P S G R+ G +AL +V+ I +
Sbjct: 372 KRYLHHYNFPPYSVGETRPIRGPGRREIGHGAL----AEKALEAVLPSQEEFPYTIRVVS 427
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V++++G T ++ G+ ++L ++ + + V +G A+
Sbjct: 428 EVLESNGSTSMGSVCGSTLSLMHAGVPIKRPVSGIAMGLVKEGDRFAVLSD--------- 478
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED+ D+D + G + +Q + +++ A L AK+ ++ +
Sbjct: 479 IQGIEDALGDMDFKVAGSAEG-VTALQMDIKIPGVTREILHAALKQAKEGRMYIMDIMMK 537
Query: 237 VISN 240
IS
Sbjct: 538 AISQ 541
Score = 117 bits (292), Expect = 2e-24, Method: Composition-based stats.
Identities = 42/234 (17%), Positives = 81/234 (34%), Gaps = 27/234 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKHGWITAEYGML 66
R + + V+K A G+ L+ +GDT +L TAT E + + + G +
Sbjct: 13 RPLRVEIGKVAKQANGAALLYYGDTVVLVTATASKEPREGIDFFPLTCDYEERLYAVGRI 72
Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
P R GR + R++ R +R + ++ + D
Sbjct: 73 PGGFIKR------EGRPTEAAILSARLMDRPIRPLFPKGFRNDVHVVATVMSVDQDNPPN 126
Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
AI GA +A G + A+ GM+ G +++ + +
Sbjct: 127 VTAIIGASIA-------------LSISDIPFAGPIGAVIVGMVDGEFVINPTVEQSARSQ 173
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
+ T IV V+ A ++ + A + I +I Q+ +++
Sbjct: 174 MHLTVGGTRD-AIVMVEARANEVP--EETMLDAIFFAHEEIKRIIDFQEKIVAE 224
>gi|110638186|ref|YP_678395.1| polynucleotide phosphorylase/polyadenylase [Cytophaga hutchinsonii
ATCC 33406]
gi|123058787|sp|Q11U61|PNP_CYTH3 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|110280867|gb|ABG59053.1| polyribonucleotide nucleotidyltransferase [Cytophaga hutchinsonii
ATCC 33406]
Length = 717
Score = 154 bits (389), Expect = 8e-36, Method: Composition-based stats.
Identities = 49/242 (20%), Positives = 84/242 (34%), Gaps = 16/242 (6%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHG 57
RL GR Q+R I A GS + G+T LTT T L+E++ + +
Sbjct: 322 RLDGRSLEQIRPIWSEVGYLPSAHGSAIFTRGETQSLTTVTFGTRLDEQMIDSAMFSGNN 381
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
+ Y STG R+ G RA++ V+ I I D
Sbjct: 382 KLMLHYNFPGFSTGEVKPNRGPGRREVGHGNL----AYRAIKKVMPPEIENPYTIRIVSD 437
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+++++G + A + +AL D ++ + + + + D+
Sbjct: 438 ILESNGSSSMATVCAGTLALMDAGIKIKAPVSGIAMGLITDTKTG-------RWAVLSDI 490
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T+ G I Q + S D L A ++ K
Sbjct: 491 LGDEDHLGDMDFKVTGTEKG-ITACQMDIKVDGLSYDILSQALQQANRGRLHILSEMKKT 549
Query: 238 IS 239
++
Sbjct: 550 LA 551
Score = 94.9 bits (234), Expect = 7e-18, Method: Composition-based stats.
Identities = 41/239 (17%), Positives = 81/239 (33%), Gaps = 33/239 (13%)
Query: 3 LSGRQENQMREISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT----KHG 57
GR EI + ++K A+GS +VK G+ +L T ++ + +
Sbjct: 16 PDGR------EIQIETGKLAKQADGSAVVKLGNAMILATVVSAKEAKPGVDFMPLSVDYQ 69
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
A G +P R R I R++ RA+R + Q+ I
Sbjct: 70 EKFASNGKIPGGFLKR------ESRLSDYEILISRLVDRAMRPLFPEDFHADTQVAITL- 122
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
I+ L D L + + G V+ + L G I++
Sbjct: 123 ------------ISADADVLPDALACLAAQAAMSVSDIPFNGPVSEVRVISLNGEFIINP 170
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ +++ + +++ V+ E + S++ + +A D I + K+
Sbjct: 171 KPAQIEKAELELIVAASYD-NVIMVE--GEMSEVSEELMLNAIKVAHDAIRTQCIVLKE 226
>gi|254466440|ref|ZP_05079851.1| 3' exoribonuclease family, domain 2 [Rhodobacterales bacterium Y4I]
gi|206687348|gb|EDZ47830.1| 3' exoribonuclease family, domain 2 [Rhodobacterales bacterium Y4I]
Length = 703
Score = 154 bits (389), Expect = 8e-36, Method: Composition-based stats.
Identities = 45/243 (18%), Positives = 90/243 (37%), Gaps = 17/243 (6%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +R+I + GS L G+T L TL +E+ +
Sbjct: 310 RIDGRDTTTVRQIVAETGLLPRTHGSALFTRGETQGLVVTTLGTGDDEQFIDALHGNFKS 369
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + + R+ G + RAL++V+ I + +
Sbjct: 370 NFLLHYNFPPYSVGEVGRVGSPGRREIGHGKL----AWRALQAVLPAPTDFPYTIRVVSE 425
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ G +++ D ++ + +L+ + + D+
Sbjct: 426 ITESNGSSSMASVCGGSLSMMDAGVPLKAPVAGVAMGLILEDDGS--------YAVLTDI 477
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T++G I +Q + A + + L AKD ++
Sbjct: 478 LGDEDHLGDMDFKVAGTENG-ITSLQMDIKVAGITPEIMEKALAQAKDGRLHILNEMGKA 536
Query: 238 ISN 240
+S
Sbjct: 537 LSE 539
Score = 104 bits (259), Expect = 1e-20, Method: Composition-based stats.
Identities = 29/222 (13%), Positives = 63/222 (28%), Gaps = 13/222 (5%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGN 72
++L V++ A+GS + G+T ++ T + E
Sbjct: 8 LTLETGKVARQADGSVIATLGETSVMANVTFARQQKPGQDFFPLTVHYQEKYYAAGKVP- 66
Query: 73 RVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITG 132
R + R+I R +R + ++ A+
Sbjct: 67 -GGFFKREARPTEKETLTARLIDRPIRPLFVPGFKNEVLVMCTVLSHDLVNDPDIVAMIA 125
Query: 133 AWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFV 192
A AL ++ V +V + + + +D
Sbjct: 126 ASAALTISGAPFMGPIAGARVGFVDGEYVLNPTVDDMQDL-------RLNPEQRLDLVVA 178
Query: 193 MTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
T + ++ V+ A ++ +N A ++I +I L
Sbjct: 179 GTKN-AVMMVESEAYE--LTEAEMLGAVNFAHEQIQPVIDLI 217
>gi|320107057|ref|YP_004182647.1| polyribonucleotide nucleotidyltransferase [Terriglobus saanensis
SP1PR4]
gi|319925578|gb|ADV82653.1| polyribonucleotide nucleotidyltransferase [Terriglobus saanensis
SP1PR4]
Length = 799
Score = 154 bits (389), Expect = 8e-36, Method: Composition-based stats.
Identities = 48/244 (19%), Positives = 88/244 (36%), Gaps = 18/244 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
+R R +++R I + + GS L G+T L TATL + + +
Sbjct: 314 IRPDRRAFDEIRTIDIEVGILPRTHGSALFTRGETQALVTATLGTGDDAQRMESYEGEQK 373
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P S G + S R+ G RA+ +V+ A + +
Sbjct: 374 KRFMLHYNFPPYSVGEVGRMTGTSRREVGHGAL----AYRAIEAVLPPEAESPYTLRVVS 429
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
D+ +++G + A++ GA +AL ++ + V +G AI
Sbjct: 430 DITESNGSSSMASVCGASLALMQAGISLKGSVAGVAMGLVKEGDSYAILTD--------- 480
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T +G I +Q + + + A+ L+
Sbjct: 481 IAGAEDHYGDMDFKVAGTRNG-ITAMQMDIKIMGITPQIMREAMEQARHGRLFLLDKMDA 539
Query: 237 VISN 240
VI++
Sbjct: 540 VIAS 543
Score = 98.8 bits (244), Expect = 6e-19, Method: Composition-based stats.
Identities = 40/233 (17%), Positives = 75/233 (32%), Gaps = 27/233 (11%)
Query: 13 EISLTRR-VSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKHGWITAEYGMLP 67
I+ ++K A G+ GD +L TA E + + ++ G +P
Sbjct: 14 RITFETGRIAKQASGAAFTSSGDVVILATAVGAPDPKEGIDFFPLTVEYRETAYGGGRIP 73
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R GR + R+I R R + Q+I +
Sbjct: 74 GGFIKR------EGRPSEKEILTCRLIDRPCRPLFPDGYRNETQVIAFVYSADKENDPDV 127
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
AI A A +G + A+ G++ G IV+ Y E +
Sbjct: 128 IAINAASCA-------------ISLSDLPFQGPIGAVRVGLIDGNFIVNPTYTERKESLI 174
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
+ T G IV V+ A+ +D + +++ + ++++
Sbjct: 175 NIIVAGTKDG-IVMVESGAKE--IPEDKVIDAIEFGHEQVKLICAGIDELVAK 224
>gi|258516323|ref|YP_003192545.1| Polyribonucleotide nucleotidyltransferase [Desulfotomaculum
acetoxidans DSM 771]
gi|257780028|gb|ACV63922.1| Polyribonucleotide nucleotidyltransferase [Desulfotomaculum
acetoxidans DSM 771]
Length = 746
Score = 154 bits (389), Expect = 8e-36, Method: Composition-based stats.
Identities = 50/243 (20%), Positives = 93/243 (38%), Gaps = 18/243 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
+R+ GR +++R IS+ V GS L G T +L+ TL EE++ + +
Sbjct: 322 IRMDGRALDEVRPISVEAGVLPRTHGSGLFTRGQTQILSVVTLGAISEEQILDGLGTEES 381
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P STG + R+ G GRAL ++ I +
Sbjct: 382 KRYMHHYNFPPFSTGETKMMRSPGRREIGHGAL----AGRALEPMIPGEEEFPYTIRVVS 437
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+ ++++G T ++ G+ +AL D ++ + + + + +
Sbjct: 438 EALESNGSTSMGSVCGSTLALMDAGVPIKAPVSGVAMGLIKEDDEIVVLTD--------- 488
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED+ D+D T G I +Q + A +Q+ L A ++ +
Sbjct: 489 IQGLEDALGDMDFKVAGTAKG-INALQMDIKVAGVTQEILEKALQQAYTGRMHIMGKMME 547
Query: 237 VIS 239
VIS
Sbjct: 548 VIS 550
Score = 107 bits (266), Expect = 2e-21, Method: Composition-based stats.
Identities = 43/240 (17%), Positives = 84/240 (35%), Gaps = 31/240 (12%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTKHGWITAEYGML 66
R +++ V+K A G+ LV +GDT +L+TA TL E + + ++ G +
Sbjct: 13 RVLTIETGRVAKQAGGAVLVAYGDTVVLSTATMSRTLREGIDFFPLTVEYEERLYAVGRI 72
Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
P R R + R+I R++R + QII + D
Sbjct: 73 PGGFIKR------EARPSENAILSCRLIDRSIRPLFPKGFRNETQIINTIMSVDQDHAPE 126
Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
AA+ G A G + + G + G I++ + + + D
Sbjct: 127 MAAMIGTSAA-------------LTISDAPFNGPIGGVIVGRVDGELIINPNAAQSAKSD 173
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK----DVISNEV 242
+ T ++ V+ A +++ + D I ++ + I ++
Sbjct: 174 LHLVVAGTKD-AVMMVEAGANE--VTEEVMLDAIAYGHDVIRQIVDFIDEFRQEAIEQQL 230
>gi|320160467|ref|YP_004173691.1| polyribonucleotide nucleotidyltransferase [Anaerolinea thermophila
UNI-1]
gi|319994320|dbj|BAJ63091.1| polyribonucleotide nucleotidyltransferase [Anaerolinea thermophila
UNI-1]
Length = 760
Score = 154 bits (389), Expect = 8e-36, Method: Composition-based stats.
Identities = 54/242 (22%), Positives = 91/242 (37%), Gaps = 18/242 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
+R R ++R I +S A GS L G+T +LT ATL E + + +
Sbjct: 315 IRPDHRTPTEIRPIWCEVGISPRAHGSGLFTRGETQVLTLATLGTPREAQELDSLVPIET 374
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P STG S R+ G RAL V+ + +
Sbjct: 375 KRYMHHYNFPPYSTGEVKPLRGQSRREIGHGAL----AERALEPVIPPEDEFPYTLRLVS 430
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V+ ++G T A++ G+ +AL D ++ + + +G A I
Sbjct: 431 EVLSSNGSTSMASVCGSTLALMDTGVPIKAPVAGVAMGLIKEGDNAVILTD--------- 481
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T+ G I +Q + + + L A++ D++K
Sbjct: 482 IQGLEDHLGDMDFKVAGTEKG-ITALQMDIKIKGITPELMSRALAQAREARLDILKKMLA 540
Query: 237 VI 238
VI
Sbjct: 541 VI 542
Score = 93.0 bits (229), Expect = 3e-17, Method: Composition-based stats.
Identities = 40/233 (17%), Positives = 77/233 (33%), Gaps = 27/233 (11%)
Query: 13 EISLTRR-VSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKHGWITAEYGMLP 67
+ ++ A G+ V+ GD+ + AT+ E + + + ++ G +P
Sbjct: 16 PVVFETGKLAGQAGGAVTVRLGDSMVFAAATMSPEPREGIDFFPLSVEYEERLYAGGRIP 75
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
S R G+ + R+ R LR + + Q+I+ +
Sbjct: 76 GSYFRR------EGKPSTEAILTARLTDRPLRPLFNKEMRNEVQVILFSLSADQENPLDI 129
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
I A AL G V A+ G + G I++ + + D+
Sbjct: 130 LCINAASAALM-------------ISDIPWGGPVGAVRIGRIDGQFIINPTFSQMEISDL 176
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
D T I+ V+ A+ +D L + + LI Q + +
Sbjct: 177 DLRIAGTRD-AILMVECGAKEVA--EDVMVQALQFGHEALQPLIDAQLQMAAE 226
>gi|218282268|ref|ZP_03488567.1| hypothetical protein EUBIFOR_01149 [Eubacterium biforme DSM 3989]
gi|218216736|gb|EEC90274.1| hypothetical protein EUBIFOR_01149 [Eubacterium biforme DSM 3989]
Length = 713
Score = 154 bits (389), Expect = 8e-36, Method: Composition-based stats.
Identities = 44/244 (18%), Positives = 86/244 (35%), Gaps = 16/244 (6%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
+R GRQ +++R ++ + GS L G+T +L+T TL + ++ +
Sbjct: 319 VRPDGRQIDEIRPLNSQVDLLPRVHGSALFTRGETQVLSTTTLGALNDNQIIDDLTVVDS 378
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P G + R+ G RAL V+ I
Sbjct: 379 KRFMHHYNFPPYCVGETGRMGNPGRREIGHGALG----ERALAQVLPSVDEFPYTIRTVA 434
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
DV++++G + A+I ++L ++ + ++ + D
Sbjct: 435 DVMESNGSSSQASICAGTMSLMAAGVPIKAPVAGIAMGLIMDDDSG-------KYTVLTD 487
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T +G I +Q + +++ F L A +++
Sbjct: 488 IQGMEDHFGDMDFKVAGTKNG-ITALQMDIKVTGITKNIFEEALAQAHKARLEILDNMLA 546
Query: 237 VISN 240
IS
Sbjct: 547 CISE 550
Score = 108 bits (268), Expect = 1e-21, Method: Composition-based stats.
Identities = 45/233 (19%), Positives = 85/233 (36%), Gaps = 27/233 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKHGWITAEYGML 66
R I++ ++K A+G+ ++++GDT L+TA E + + G +
Sbjct: 13 RGITVETGEIAKQADGAVIIRYGDTVTLSTACASNQAKEGIDFFPLTVSFEEKLYSVGKI 72
Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
P R GR + RMI R +R + Q++ + D
Sbjct: 73 PGGFLRR------EGRPSEHATLTARMIDRPIRPLFAEGFRNEVQVVNTVLSVDQDASPE 126
Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
AA+ GA +AL G +A G + G + + + D
Sbjct: 127 MAAMFGASLALC-------------ISDIPFNGPIAGCKVGRINGELVANPTVAQMEESD 173
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
+D T + V+ A+ S++ A L ++I L Q+++++
Sbjct: 174 IDLTVAGTAQ-ALNMVEAGAKE--VSEEDMLAALMFGHEQIKKLCAFQEEIVA 223
>gi|298528722|ref|ZP_07016126.1| polyribonucleotide nucleotidyltransferase [Desulfonatronospira
thiodismutans ASO3-1]
gi|298512374|gb|EFI36276.1| polyribonucleotide nucleotidyltransferase [Desulfonatronospira
thiodismutans ASO3-1]
Length = 739
Score = 154 bits (389), Expect = 9e-36, Method: Composition-based stats.
Identities = 47/244 (19%), Positives = 87/244 (35%), Gaps = 18/244 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
+R+ GR +R +S+ + GS L G+T LT ATL + + +
Sbjct: 320 IRIDGRDLKTVRPLSMEVGLLPRTHGSALFTRGETTALTIATLGSSTDIQHIETLSGDSS 379
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P G S R+ G RA++ V+ S I +
Sbjct: 380 KSFMLHYNFPPYCVGEVKFLRGPSRREIGHGVL----AERAIQPVLPSSEDFPFTIRLVS 435
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+++ ++G + A + G +AL D +++ + + + + D
Sbjct: 436 EIMDSNGSSSMATVCGGTLALMDAGIPVKEPVAGIAMGLIRENDE---------YLVLTD 486
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D + G I VQ + + S + L+ A + ++ K
Sbjct: 487 ILGDEDHLGDMDFKVAGSYDG-ITAVQMDIKISGISGEIMHQALDQALEARRHILDQMKQ 545
Query: 237 VISN 240
VI
Sbjct: 546 VIDE 549
Score = 100 bits (248), Expect = 2e-19, Method: Composition-based stats.
Identities = 46/228 (20%), Positives = 84/228 (36%), Gaps = 25/228 (10%)
Query: 13 EISLTRR-VSKYAEGSCLVKFGDTHLLTTAT---LEEKVPMWIRNTKHGWITAEYGMLPR 68
+I+ ++ A GS LV+ GDT +L TA +E + + ++ G +P
Sbjct: 18 KINFETGKMANQAHGSVLVQSGDTVVLVTAVTQPMENNPGFFPLTVNYQEMSYAAGKIPG 77
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
S R GR R + R+I R++R + + Q++
Sbjct: 78 SYFRR-----EIGRPSERETLVSRLIDRSIRPLFPETFNDEVQVMATVLSADPVNDPDIL 132
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
AI+GA ALH G +A G + I++ D+
Sbjct: 133 AISGASAALHM-------------SKIPFMGPLAGARVGYIDDEFILNPSLKLLDQSDLS 179
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
T +G +V V+G A +D ++ A ++ ++ Q++
Sbjct: 180 LMVASTRNG-VVMVEGVA--DFVPEDIVARAIDWASQQVIPILDSQEE 224
>gi|116072072|ref|ZP_01469340.1| Ribonuclease PH [Synechococcus sp. BL107]
gi|116065695|gb|EAU71453.1| Ribonuclease PH [Synechococcus sp. BL107]
Length = 243
Score = 154 bits (389), Expect = 9e-36, Method: Composition-based stats.
Identities = 101/240 (42%), Positives = 147/240 (61%), Gaps = 4/240 (1%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R GR N +R S+T +A S V+ G T +L + L++ VP W R GW++A
Sbjct: 8 RADGRCRNDLRPFSVTWDPMGFALSSVTVRTGRTTVLCSVCLDDNVPRWRRGEGLGWLSA 67
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
EY +LP ST R R + GR+QEIQR+IGR+LR+ VD++ LG R ++IDCDVI+A
Sbjct: 68 EYRLLPGSTPQRQGR--ELMKLSGRTQEIQRLIGRSLRAAVDMAKLGERTLLIDCDVIEA 125
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
D GTRTAAITGAW+AL + L+ VAA+S G++ G ++DLDY E
Sbjct: 126 DAGTRTAAITGAWLALQRACSRLVSQGILESS--PLQSQVAAVSVGLVDGQALLDLDYSE 183
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
DS +VD N V D G ++EVQG+AE A FS+ +L+LA+ + L++ Q++ ++++
Sbjct: 184 DSRAEVDLNVVQADDGRLLEVQGTAEGAPFSRAQLDELLDLAEPGLKQLMQAQREALASD 243
>gi|26991392|ref|NP_746817.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas putida
KT2440]
gi|81439660|sp|Q88DW0|PNP_PSEPK RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|24986460|gb|AAN70281.1|AE016668_7 polyribonucleotide nucleotidyltransferase [Pseudomonas putida
KT2440]
Length = 701
Score = 154 bits (389), Expect = 9e-36, Method: Composition-based stats.
Identities = 45/243 (18%), Positives = 92/243 (37%), Gaps = 18/243 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +R +++ V GS L G+T L ATL + ++ + K
Sbjct: 316 RIDGRDNKTVRPLNIEVGVLPKTHGSALFTRGETQALVVATLGTARDAQLLDTLEGEKKD 375
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + R+ G + R++++++ + + I + +
Sbjct: 376 PFMLHYNFPPFSVGECGRMGGAGRREIGHGRL----ARRSVQAMLPAADVFPYTIRVVSE 431
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ GA +AL D M+ + V +G A+ +
Sbjct: 432 ITESNGSSSMASVCGASLALMDAGVPMKAPVAGIAMGLVKEGDKFAVLTD---------I 482
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T G + +Q + +++ L A + +++ V
Sbjct: 483 LGDEDHLGDMDFKVAGTAKG-VTALQMDIKINGITEEIMEIALGQALEARLNILGQMNQV 541
Query: 238 ISN 240
I
Sbjct: 542 IGQ 544
Score = 99.5 bits (246), Expect = 4e-19, Method: Composition-based stats.
Identities = 34/234 (14%), Positives = 76/234 (32%), Gaps = 29/234 (12%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTH-LLTTATLEEKVPM----WIRNTKHGWITAEYGMLP 67
++L +++ A G+ LV + +L T ++ + + + T G +P
Sbjct: 15 VTLETGRIARQATGAVLVTVDNDVTVLVTVVGAKQADPGKGFFPLSVHYQEKTYAAGKIP 74
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R GR + R+I R +R + + Q++
Sbjct: 75 GGFFKR------EGRPSEKETLTSRLIDRPIRPLFPEGFMNEVQVVCTVVSTSKKTDPDI 128
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY-PIVDLDYGEDSTID 186
AA+ G A +G + A +++ Y + +
Sbjct: 129 AAMIGTSAA-------------LAISGIPFEGPIGAARVAFHESTGYLLNPTYEQLAASS 175
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
+D T ++ V+ A+ ++D + A D +I+ K++ +
Sbjct: 176 LDMVVAGTSD-AVLMVESEAQE--LTEDQMLGAVLFAHDEFQAVIQAVKELAAE 226
>gi|8928246|sp|O87792|PNP_PSEPU RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|3650364|emb|CAA77048.1| polyribonucleotide nucleotidyltransferase [Pseudomonas putida]
Length = 701
Score = 154 bits (389), Expect = 9e-36, Method: Composition-based stats.
Identities = 45/243 (18%), Positives = 92/243 (37%), Gaps = 18/243 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +R +++ V GS L G+T L ATL + ++ + K
Sbjct: 316 RIDGRDNKTVRPLNIEVGVLPKTHGSALFTRGETQALVVATLGTARDAQLLDTLEGEKKD 375
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + R+ G + R++++++ + + I + +
Sbjct: 376 PFMLHYNFPPFSVGECGRMGGAGRREIGHGRL----ARRSVQAMLPAADVFPYTIRVVSE 431
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ GA +AL D M+ + V +G A+ +
Sbjct: 432 ITESNGSSSMASVCGASLALMDAGVPMKAPVAGIAMGLVKEGDKFAVLTD---------I 482
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T G + +Q + +++ L A + +++ V
Sbjct: 483 LGDEDHLGDMDFKVAGTAKG-VTALQMDIKINGITEEIMEIALGQALEARLNILGQMNQV 541
Query: 238 ISN 240
I
Sbjct: 542 IGQ 544
Score = 99.5 bits (246), Expect = 4e-19, Method: Composition-based stats.
Identities = 34/234 (14%), Positives = 76/234 (32%), Gaps = 29/234 (12%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTH-LLTTATLEEKVPM----WIRNTKHGWITAEYGMLP 67
++L +++ A G+ LV + +L T ++ + + + T G +P
Sbjct: 15 VTLETGRIARQATGAVLVTVDNDVTVLVTVVGAKQADPGKGFFPLSVHYQEKTYAAGKIP 74
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R GR + R+I R +R + + Q++
Sbjct: 75 GGFFKR------EGRPSEKETLTSRLIDRPIRPLFPEGFMNEVQVVCTVVSTSKKTDPDI 128
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY-PIVDLDYGEDSTID 186
AA+ G A +G + A +++ Y + +
Sbjct: 129 AAMIGTSAA-------------LAISGIPFEGPIGAARVAFHESTGYLLNPTYEQLAASS 175
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
+D T ++ V+ A+ ++D + A D +I+ K++ +
Sbjct: 176 LDMVVAGTSD-AVLMVESEAQE--LTEDQMLGAVLFAHDEFQAVIQAVKELAAE 226
>gi|153951894|ref|YP_001397657.1| polynucleotide phosphorylase/polyadenylase [Campylobacter jejuni
subsp. doylei 269.97]
gi|187610250|sp|A7H2C7|PNP_CAMJD RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|152939340|gb|ABS44081.1| polyribonucleotide nucleotidyltransferase [Campylobacter jejuni
subsp. doylei 269.97]
Length = 718
Score = 154 bits (389), Expect = 1e-35, Method: Composition-based stats.
Identities = 47/245 (19%), Positives = 84/245 (34%), Gaps = 22/245 (8%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWI------RNTK 55
R GR N++R IS+ + A GSCL G T L ATL + + +N
Sbjct: 335 RADGRSLNEVRPISIETNILPNAHGSCLFTRGQTQALVVATLGGENDAQMIDLLTEKNPI 394
Query: 56 HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115
Y S G +A R+ G RAL V I +
Sbjct: 395 SERFMVNYNFPGFSVGEASPIKAPGRRELGHGNL----AKRALYPSV--DENYPYVIRLV 448
Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIV 175
++++++G + A + G +AL + + + + A+ ++
Sbjct: 449 SEILESNGSSSMATVCGGSLALKAAGVPSLKLVAGVAMGLIFEDNKYAVLTDIM------ 502
Query: 176 DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
ED D+D + G I +Q + Q+ L AK+ ++ + +
Sbjct: 503 ---GLEDHDGDMDFKVAGSKDG-ITALQMDIKLGGIDQETLKQALYQAKEGRIHILNIME 558
Query: 236 DVISN 240
+
Sbjct: 559 EATKE 563
Score = 79.1 bits (193), Expect = 5e-13, Method: Composition-based stats.
Identities = 40/250 (16%), Positives = 75/250 (30%), Gaps = 49/250 (19%)
Query: 20 VSKYAEGSCLVKFGDTHLLTTATLEE---KVPMWIRNTKHGWITAEYGMLPRSTGNRVKR 76
V+K A G L++ G + +L T EE + ++ G +P R
Sbjct: 19 VAKQATG-VLMRQGKSVVLATVAREEKQVEEDFLPLTVQYIEKAYAAGKIPGGYVKR--- 74
Query: 77 EAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVA 136
+ R+I R+LR + QI++ + ++ A VA
Sbjct: 75 ---ETKPSDAETLTARIIDRSLRPLFPKGYAYPTQIVVMVLSADPKVDLQVMSLNAASVA 131
Query: 137 LHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDS 196
L+ +K V + G + G I++ + E +D
Sbjct: 132 LY-------------LSDIPMKAPVCGVRIGKIDGNFILNPNNEELQNSTLDLYVAGVKD 178
Query: 197 GHIVEVQGSA-------------------------ERATFSQDHFFAMLNLAKDRIADLI 231
++ ++ A S+D LNLA+ I +
Sbjct: 179 -ELLMIEMRALPDQKENEIFIEAPYADVLTQTTSQNMNELSEDEILEALNLAQKAILNGS 237
Query: 232 KLQKDVISNE 241
++ S
Sbjct: 238 NAYEEAFSKH 247
>gi|254510470|ref|ZP_05122537.1| 3' exoribonuclease family, domain 2, protein [Rhodobacteraceae
bacterium KLH11]
gi|221534181|gb|EEE37169.1| 3' exoribonuclease family, domain 2, protein [Rhodobacteraceae
bacterium KLH11]
Length = 716
Score = 154 bits (389), Expect = 1e-35, Method: Composition-based stats.
Identities = 46/243 (18%), Positives = 88/243 (36%), Gaps = 17/243 (6%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +R I + GS L G+T L TL +E+ +
Sbjct: 318 RIDGRSTTDIRSIVAETSMLPRTHGSALFTRGETQALAVTTLGTGDDEQFIDALHGNFKS 377
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + R+ G + RAL++V+ + I I +
Sbjct: 378 NFLLHYNFPPYSVGEVGRVGGPGRREIGHGKL----AWRALQAVLPAATDFPYTIRIVSE 433
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ G +++ D ++ + +L+ + D+
Sbjct: 434 ITESNGSSSMASVCGGSLSMMDAGVPLKAPVAGVAMGLILEDD--------GNYAILSDI 485
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T++G I +Q + A + + L AKD ++
Sbjct: 486 LGDEDHLGDMDFKVAGTENG-ITSLQMDIKVAGITPEIMEKALAQAKDGRMHILGEMGKA 544
Query: 238 ISN 240
+S
Sbjct: 545 LSE 547
Score = 102 bits (253), Expect = 6e-20, Method: Composition-based stats.
Identities = 30/228 (13%), Positives = 61/228 (26%), Gaps = 25/228 (10%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGN 72
++L V++ A+GS + G+T ++ T E
Sbjct: 16 LTLETGKVARQADGSVIATLGETSVMANVTFARAQKPGQDFFPLTVHYQEKYYAAGKVP- 74
Query: 73 RVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITG 132
R + R+I R +R + ++ A+
Sbjct: 75 -GGFFKREARPTEKETLTARLIDRPIRPLFVDGFKNEVLVMCTVLSHDLVNDPDIVAMIA 133
Query: 133 AWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDST------ID 186
A A +G +A G G +++ +
Sbjct: 134 ASAA-------------LTISGAPFRGPIAGARVGFEDGEYVLNPTVDDMQDLRLNPEQR 180
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
+D T ++ V+ A S+ + A ++I +I L
Sbjct: 181 LDLVVAGTKD-AVMMVESEAYE--LSEAEMLGAVTFAHEQIQPVIDLI 225
>gi|332882701|ref|ZP_08450313.1| polyribonucleotide nucleotidyltransferase [Capnocytophaga sp. oral
taxon 329 str. F0087]
gi|332679501|gb|EGJ52486.1| polyribonucleotide nucleotidyltransferase [Capnocytophaga sp. oral
taxon 329 str. F0087]
Length = 747
Score = 154 bits (389), Expect = 1e-35, Method: Composition-based stats.
Identities = 52/244 (21%), Positives = 83/244 (34%), Gaps = 20/244 (8%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
+RL GR Q+R I A GS + G+T LTT TL E V
Sbjct: 318 IRLDGRNTTQIRPIWCEVGYLPSAHGSSIFTRGETQSLTTVTLGTSREANVIDLPSEQGE 377
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P STG S R+ G QR + R + + +
Sbjct: 378 ERFYLHYNFPPFSTGEARPLRGTSRREIGHGNLAQRALKRMIP------EDCPYTVRVVS 431
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
++++++G + A + +AL D M + + + G A+
Sbjct: 432 EILESNGSSSMATVCAGTLALMDAGVQMVKPVSGIAMGLISDGDRYAVLSD--------- 482
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T G I Q + S + LN A++ ++ D
Sbjct: 483 ILGDEDHLGDMDFKVTGTADG-ITACQMDIKIKGLSYEILEKALNQAREGRMHILGKITD 541
Query: 237 VISN 240
I+
Sbjct: 542 TIAQ 545
Score = 105 bits (261), Expect = 7e-21, Method: Composition-based stats.
Identities = 38/241 (15%), Positives = 73/241 (30%), Gaps = 28/241 (11%)
Query: 7 QENQMREISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRN----TKHGWITA 61
R I++ ++K A+G+ +V+ G+ LL T + + A
Sbjct: 11 DLGDGRTITIETGKLAKQADGAVVVQMGNAMLLATVVSARDINPETDFLPLTVDYREKFA 70
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
G P R R + R++ R LR + Q
Sbjct: 71 AAGRFPGGFFKR------EARPSDQEILTMRLVDRVLRPLFPKDYHAETQ---------- 114
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
I+ + D L + + G ++ + G + G IV+ +
Sbjct: 115 ---VMIQLISHDENVMPDALAGLAASACLAVSDIPFDGPISEVRVGRVNGKFIVNPSREQ 171
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
D+D + V+ E S+ + A + I I+ Q ++ +
Sbjct: 172 LEASDIDIMV-GASKDFVAMVE--GEMDEVSEKDMAEAIKFAHEAIKPHIEAQLR-LAEK 227
Query: 242 V 242
V
Sbjct: 228 V 228
>gi|310820087|ref|YP_003952445.1| ribonuclease ph [Stigmatella aurantiaca DW4/3-1]
gi|309393159|gb|ADO70618.1| Ribonuclease PH [Stigmatella aurantiaca DW4/3-1]
Length = 237
Score = 154 bits (389), Expect = 1e-35, Method: Composition-based stats.
Identities = 115/239 (48%), Positives = 149/239 (62%), Gaps = 2/239 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR R +R ++LT VS++AEGS V+FG T ++ T ++EE+VP + GW+T
Sbjct: 1 MRSFQRGVLDLRPVTLTPGVSRHAEGSAQVEFGHTRVIVTCSVEERVPPHLMGKGTGWVT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPRST R REA G+Q GR+ EIQR+IGR++R+ V+LS LG R + +DCDVIQ
Sbjct: 61 AEYGMLPRSTHTRSPREAAKGKQSGRTMEIQRLIGRSMRAAVNLSTLGPRTLTLDCDVIQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+ITGA+VAL L+ + S +AA+S G++ G VDLDY
Sbjct: 121 ADGGTRTASITGAYVALVMALRSL--NSKGTLSRMPSLTPLAAVSVGVVKGEVRVDLDYE 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
EDS DVD N V T G IVEVQG+AE F + AML+ I L Q V+
Sbjct: 179 EDSAADVDLNLVATGDGRIVEVQGTAEHQLFDRKALDAMLDGGMAAIQQLTAAQAKVLG 237
>gi|254563353|ref|YP_003070448.1| polynucleotide phosphorylase/polyadenylase [Methylobacterium
extorquens DM4]
gi|254270631|emb|CAX26635.1| polynucleotide phosphorylase/polyadenylase [Methylobacterium
extorquens DM4]
Length = 748
Score = 154 bits (389), Expect = 1e-35, Method: Composition-based stats.
Identities = 50/241 (20%), Positives = 91/241 (37%), Gaps = 18/241 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +R I V A GS L G+T L ATL +E+ + T
Sbjct: 316 RIDGRDVKTVRSIVSEVGVLPRAHGSSLFTRGETQALVVATLGTGEDEQFIDALEGTYKE 375
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + + R+ G + RA+R V+ + I + +
Sbjct: 376 RFLLHYNFPPYSVGETGRMGSPGRREIGHGKL----AWRAIRPVLPPAHEFPYTIRVVSE 431
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ G ++L D + + +L+G A+ +
Sbjct: 432 ITESNGSSSMASVCGGSLSLMDAGVPLRRPVAGIAMGLILEGERFAVLSD---------I 482
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D ++ G I +Q + A +++ L AKD A ++
Sbjct: 483 LGDEDHLGDMDFKVAGSEEG-ITSLQMDIKIAGITEEIMKIALAQAKDGRAHILGEMSKA 541
Query: 238 I 238
+
Sbjct: 542 L 542
Score = 104 bits (259), Expect = 1e-20, Method: Composition-based stats.
Identities = 36/228 (15%), Positives = 72/228 (31%), Gaps = 27/228 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRN----TKHGWITAEYGML 66
R++ L ++ A+GS + +G+T +L T ++ I + G +
Sbjct: 14 RKLVLETGKTARQADGSVVATYGETTVLATVVAGKEPKAGIDFLPLTVNYQERAYAAGRI 73
Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
P R GR + + R+I R +R + Q+++ +
Sbjct: 74 PGGYFKR------EGRPSEKETLVSRLIDRPIRPLFVEGWRNDTQVVVTVLSHDLENDPD 127
Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
A+ A A G + A G L G ++ E +
Sbjct: 128 IVAMVAASAA-------------LTLSGVPFMGPIGAARVGYLNGGYKLNPLVTEIAEST 174
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
+D T ++ V+ A+ S+D + +I+
Sbjct: 175 LDLVVAGTQD-AVLMVESEAKE--LSEDVMLGAVMFGHKHFQPVIEAI 219
>gi|218532284|ref|YP_002423100.1| polynucleotide phosphorylase/polyadenylase [Methylobacterium
chloromethanicum CM4]
gi|240140844|ref|YP_002965324.1| polynucleotide phosphorylase/polyadenylase [Methylobacterium
extorquens AM1]
gi|254782727|sp|B7KN55|PNP_METC4 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|257096722|sp|A9W8P8|PNP_METEP RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|218524587|gb|ACK85172.1| Polyribonucleotide nucleotidyltransferase [Methylobacterium
chloromethanicum CM4]
gi|240010821|gb|ACS42047.1| polynucleotide phosphorylase/polyadenylase [Methylobacterium
extorquens AM1]
Length = 745
Score = 154 bits (389), Expect = 1e-35, Method: Composition-based stats.
Identities = 50/241 (20%), Positives = 91/241 (37%), Gaps = 18/241 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +R I V A GS L G+T L ATL +E+ + T
Sbjct: 316 RIDGRDVKTVRSIVSEVGVLPRAHGSSLFTRGETQALVVATLGTGEDEQFIDALEGTYKE 375
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + + R+ G + RA+R V+ + I + +
Sbjct: 376 RFLLHYNFPPYSVGETGRMGSPGRREIGHGKL----AWRAIRPVLPPAHEFPYTIRVVSE 431
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ G ++L D + + +L+G A+ +
Sbjct: 432 ITESNGSSSMASVCGGSLSLMDAGVPLRRPVAGIAMGLILEGERFAVLSD---------I 482
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D ++ G I +Q + A +++ L AKD A ++
Sbjct: 483 LGDEDHLGDMDFKVAGSEEG-ITSLQMDIKIAGITEEIMKIALAQAKDGRAHILGEMSKA 541
Query: 238 I 238
+
Sbjct: 542 L 542
Score = 104 bits (259), Expect = 1e-20, Method: Composition-based stats.
Identities = 36/228 (15%), Positives = 72/228 (31%), Gaps = 27/228 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRN----TKHGWITAEYGML 66
R++ L ++ A+GS + +G+T +L T ++ I + G +
Sbjct: 14 RKLVLETGKTARQADGSVVATYGETTVLATVVAGKEPKAGIDFLPLTVNYQERAYAAGRI 73
Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
P R GR + + R+I R +R + Q+++ +
Sbjct: 74 PGGYFKR------EGRPSEKETLVSRLIDRPIRPLFVEGWRNDTQVVVTVLSHDLENDPD 127
Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
A+ A A G + A G L G ++ E +
Sbjct: 128 IVAMVAASAA-------------LTLSGVPFMGPIGAARVGYLNGGYKLNPLVTEIAEST 174
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
+D T ++ V+ A+ S+D + +I+
Sbjct: 175 LDLVVAGTQD-AVLMVESEAKE--LSEDVMLGAVMFGHKHFQPVIEAI 219
>gi|21674467|ref|NP_662532.1| polynucleotide phosphorylase/polyadenylase [Chlorobium tepidum TLS]
gi|81790880|sp|Q8KBY3|PNP_CHLTE RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|21647655|gb|AAM72874.1| polyribonucleotide nucleotidyltransferase [Chlorobium tepidum TLS]
Length = 733
Score = 154 bits (389), Expect = 1e-35, Method: Composition-based stats.
Identities = 47/243 (19%), Positives = 86/243 (35%), Gaps = 18/243 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
RL GR Q+R IS+ + A GS L G+T L T TL + + + + K
Sbjct: 332 RLDGRTLEQVRPISIELGLIPRAHGSALFTRGETQALVTLTLGTKKDAQSVDTLTDDKDK 391
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + R+ G RA++ V+ + + D
Sbjct: 392 RFMLHYNFPPFSVGEIGRVGGAGRREIGHGNL----AERAIKMVMPSEQEFPYTVRLVSD 447
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+++++G + A++ G +A D ++ + + + +G A+ +
Sbjct: 448 ILESNGSSSMASVCGGTLAAMDGGIPLKKPVSGIAMGLIKEGDRYAVLSD---------I 498
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T G I Q + L A+ ++ + +
Sbjct: 499 LGNEDHLGDMDFKVAGTRDG-ITACQMDIKIDGLDYHILETALEQARKGRLHILDVMAEA 557
Query: 238 ISN 240
I
Sbjct: 558 IPE 560
Score = 114 bits (285), Expect = 1e-23, Method: Composition-based stats.
Identities = 46/235 (19%), Positives = 79/235 (33%), Gaps = 29/235 (12%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVP-----MWIRNTKHGWITAEYGMLP 67
I++ ++K A+GS +V DT +L T + P + ++ + G P
Sbjct: 15 ITIETGKMAKQADGSAVVTMNDTMVLATVVSSKTPPSPNQDFFPLQVEYREKYSAAGKFP 74
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R GR + R+I RALR + QIII
Sbjct: 75 GGFFKR------EGRPSEKEILSARLIDRALRPLFPDGYYQETQIIISVISSDTINDADV 128
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
A A+ ++ + G + G IV+ D E + D+
Sbjct: 129 LGGIAASAAIM-------------VSDIPFANPMSEVRVGRINGLFIVNPDINELAQSDM 175
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNEV 242
D T+ I ++ E S+ + D I + LQ++ ++ EV
Sbjct: 176 DICIGGTED-TICMLE--GEMKEISEAEMLDAIKFGHDAIKKICALQRE-LAAEV 226
>gi|254461626|ref|ZP_05075042.1| 3' exoribonuclease family, domain 2 [Rhodobacterales bacterium
HTCC2083]
gi|206678215|gb|EDZ42702.1| 3' exoribonuclease family, domain 2 [Rhodobacteraceae bacterium
HTCC2083]
Length = 713
Score = 154 bits (389), Expect = 1e-35, Method: Composition-based stats.
Identities = 44/241 (18%), Positives = 88/241 (36%), Gaps = 17/241 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +R I + GS L G+T L TL +E+ +
Sbjct: 318 RIDGRDTTTIRPIVSETGLLPRTHGSALFTRGETQGLVVTTLGTGDDEQFIDSLHGNFKS 377
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + R+ G + RAL++V+ + + + +
Sbjct: 378 NFLLHYNFPPYSVGEAGRVGPPGRREIGHGKL----AWRALQAVLPAATDFPYTVRVVSE 433
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ G +++ D ++ + +++ + + D+
Sbjct: 434 ITESNGSSSMASVCGGSLSMMDAGVPLKSAVAGVAMGLIMEEDGS--------YAILSDI 485
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T++G I +Q + A + D L AKD ++
Sbjct: 486 LGDEDHLGDMDFKVAGTENG-ITSLQMDIKIAGITPDIMEKALAQAKDGRMHILGEMGKA 544
Query: 238 I 238
I
Sbjct: 545 I 545
Score = 102 bits (254), Expect = 5e-20, Method: Composition-based stats.
Identities = 33/228 (14%), Positives = 64/228 (28%), Gaps = 25/228 (10%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGN 72
++L V++ A+G + G+T ++ T +K E
Sbjct: 16 LTLETGKVARQADGCVIATLGETSVMAAVTFAKKQKPGQDFFPLTVHYQEKYYAAGKVP- 74
Query: 73 RVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITG 132
R + R+I R +R + ++ D T A+
Sbjct: 75 -GGFFKREARPSEKETLTARLIDRPIRPLFVPGFKNEVLVMCTVLSHDLDNDPDTLAMIA 133
Query: 133 AWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDST------ID 186
A A G +A G + G ++ +
Sbjct: 134 ASAA-------------LTISGAPFMGPIACARVGFVDGEYTLNPTVDDMQDLRLNPEQR 180
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
+D T ++ V+ A S+ +N A ++I +I L
Sbjct: 181 LDLVVAGTKD-AVMMVESEAYE--LSEAEMLGAVNFAHEQIQPVIDLI 225
>gi|253583637|ref|ZP_04860835.1| polyribonucleotide nucleotidyltransferase [Fusobacterium varium
ATCC 27725]
gi|251834209|gb|EES62772.1| polyribonucleotide nucleotidyltransferase [Fusobacterium varium
ATCC 27725]
Length = 699
Score = 154 bits (388), Expect = 1e-35, Method: Composition-based stats.
Identities = 42/242 (17%), Positives = 89/242 (36%), Gaps = 18/242 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR+ ++R + V GS + G+T + TL +E++ +
Sbjct: 324 RVDGRKTTEIRPLFAETGVLPIPHGSAMFTRGETQAIVVTTLGTKEDEQLVDDLEKEYFK 383
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + + R+ G RAL V+ I + +
Sbjct: 384 KFYLHYNFPPYSVGETGRMGSPGRRELGHGSL----AERALSYVIPSEEEFPYTIRVVSE 439
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A+I G ++L +++ + + +G + ++
Sbjct: 440 ITESNGSSSQASICGGSLSLMAAGVPIKEHVAGIAMGLIKEGEEFTVLTDIM-------- 491
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T +G I +Q + +++ L A D +++ + +
Sbjct: 492 -GLEDHLGDMDFKVAGTKNG-ITALQMDIKITGITEEIMRIALKQALDARNEILVVMNNA 549
Query: 238 IS 239
IS
Sbjct: 550 IS 551
Score = 99.5 bits (246), Expect = 3e-19, Method: Composition-based stats.
Identities = 37/230 (16%), Positives = 78/230 (33%), Gaps = 27/230 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKV----PMWIRNTKHGWITAEYGML 66
R +S + +++ + G+ +V++G+T LL+T ++ + + G
Sbjct: 14 RTLSFSTGKIARQSCGAVMVQYGETVLLSTVNRSKEPRKGADFFPLTVDYIEKFYAAGKF 73
Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
P R GR + R+I R +R + I+
Sbjct: 74 PGGFNKR------EGRPSTNATLTARLIDRPIRPMFPEGFNHDVHIVNTVFSYDEKNTPD 127
Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
I G+ +AL G VA + G G I++ E T +
Sbjct: 128 YLGIIGSSMALM-------------LSDLPFLGPVAGVVVGYKNGEFILNPTPEELETSE 174
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
++ + + + V+ A+ ++ A + A + I + Q++
Sbjct: 175 LELSVAGSKD-AVNMVEAGAKE--LDEETMLAAIMFAHENIKKICAFQEE 221
>gi|304310511|ref|YP_003810109.1| Polyribonucleotide nucleotidyltransferase [gamma proteobacterium
HdN1]
gi|301796244|emb|CBL44452.1| Polyribonucleotide nucleotidyltransferase [gamma proteobacterium
HdN1]
Length = 701
Score = 154 bits (388), Expect = 1e-35, Method: Composition-based stats.
Identities = 45/242 (18%), Positives = 91/242 (37%), Gaps = 18/242 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +R IS+ GS L G+T + TATL + + ++ +
Sbjct: 316 RIDGRDNKTVRPISIEVGNLARTHGSALFTRGETQAIVTATLGSMRDSQTVDYLEGARSE 375
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P G + R+ G + R +++V+ ++ I + +
Sbjct: 376 PFMLHYNFPPFCVGETGGQLGPKRREIGHGRL----ARRGIQAVLPENSAFPYAIRVVSE 431
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ G+ +AL D ++ + V +G A+ +
Sbjct: 432 ITESNGSSSMASVCGSSLALMDAGVPLKAPVAGIAMGLVKEGDRFAVLTD---------I 482
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T G + +Q + +++ LN A+D ++ V
Sbjct: 483 LGDEDHLGDMDFKVAGTAKG-VTALQMDIKIDGITEEIMEVALNQARDGRLHILGEMAKV 541
Query: 238 IS 239
I
Sbjct: 542 IE 543
Score = 94.5 bits (233), Expect = 1e-17, Method: Composition-based stats.
Identities = 36/229 (15%), Positives = 65/229 (28%), Gaps = 20/229 (8%)
Query: 15 SLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGNR 73
+L +++ A G+ LV +L T ++K E
Sbjct: 17 TLETGKIARQATGAVLVSTAQVAVLVTVVGKKKADPSKDFFPLTVNYQEKTYASGRIP-- 74
Query: 74 VKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGA 133
G+ + R+I R LR + QII AA+ GA
Sbjct: 75 GGYFKREGKPSEKETLTSRLIDRPLRPLFPEGFRNEVQIIATVLSTDKKTDPDIAALVGA 134
Query: 134 WVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVM 193
A G + A G + G +++ Y +D
Sbjct: 135 SAA-------------LAISGIPFNGPIGAARVGFVDGSYVLNPCYAALEKSSLDLVVAG 181
Query: 194 TDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNEV 242
T ++ V+ A+ ++D + + I+ + EV
Sbjct: 182 T-DQAVLMVESEAKE--LTEDQMLGAVLYGHQEMQVAIEAIN-AFAKEV 226
>gi|213961824|ref|ZP_03390090.1| polyribonucleotide nucleotidyltransferase [Capnocytophaga sputigena
Capno]
gi|213955613|gb|EEB66929.1| polyribonucleotide nucleotidyltransferase [Capnocytophaga sputigena
Capno]
Length = 744
Score = 154 bits (388), Expect = 1e-35, Method: Composition-based stats.
Identities = 52/244 (21%), Positives = 83/244 (34%), Gaps = 20/244 (8%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
+RL GR Q+R I A GS + G+T LTT TL E V
Sbjct: 318 IRLDGRNTTQIRPIWCEVGYLPSAHGSSIFTRGETQSLTTVTLGTSREANVIDLPSEQGE 377
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P STG S R+ G QR + R + + +
Sbjct: 378 ERFYLHYNFPPFSTGEARPLRGTSRREIGHGNLAQRALKRMIP------EDCPYTVRVVS 431
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
++++++G + A + +AL D M + + + G A+
Sbjct: 432 EILESNGSSSMATVCAGTLALMDAGVQMVKPVSGIAMGLITDGERYAVLSD--------- 482
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T G I Q + S + LN A++ ++ D
Sbjct: 483 ILGDEDHLGDMDFKVTGTADG-ITACQMDIKIKGLSYEILEKALNQAREGRMHILGKITD 541
Query: 237 VISN 240
I+
Sbjct: 542 TIAQ 545
Score = 105 bits (262), Expect = 5e-21, Method: Composition-based stats.
Identities = 38/240 (15%), Positives = 75/240 (31%), Gaps = 28/240 (11%)
Query: 8 ENQMREISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRN----TKHGWITAE 62
R I++ ++K A+G+ +V+ G+ LL T +++ + A
Sbjct: 12 LGDGRTITIETGKLAKQADGAVVVQMGNAMLLATVVSAKEINPETDFLPLTVDYREKFAA 71
Query: 63 YGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQAD 122
G P R R + R++ R LR + Q
Sbjct: 72 AGRFPGGFFKR------EARPSDQEILTMRLVDRVLRPLFPKDYHAETQ----------- 114
Query: 123 GGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGED 182
I+ + D L + + G ++ + G + G IV+ +
Sbjct: 115 --VMIQLISHDENVMPDALAGLAASACLAVSDIPFDGPISEVRVGRVNGQFIVNPSREQL 172
Query: 183 STIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNEV 242
D+D + V+ E S+ + A + I I+ Q ++ +V
Sbjct: 173 EASDIDIMV-GASKDFVAMVE--GEMDEVSEKDMAEAIKFAHEAIKPHIEAQLR-LAEKV 228
>gi|312885678|ref|ZP_07745313.1| polyribonucleotide nucleotidyltransferase [Mucilaginibacter paludis
DSM 18603]
gi|311301885|gb|EFQ78919.1| polyribonucleotide nucleotidyltransferase [Mucilaginibacter paludis
DSM 18603]
Length = 715
Score = 154 bits (388), Expect = 1e-35, Method: Composition-based stats.
Identities = 51/241 (21%), Positives = 85/241 (35%), Gaps = 16/241 (6%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
RL GR Q+R I A GS + G+T LTT TL +E++ +
Sbjct: 320 RLDGRTTTQIRPIWSEVGYLPAAHGSAVFTRGETQALTTVTLGAKDDEQMIDGAFINGYQ 379
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y STG R+ G R+L+ V+ I I D
Sbjct: 380 KFLLHYNFPGFSTGEVRPNRGAGRREIGHGNL----AMRSLKQVLPDENENPYTIRIVSD 435
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+++++G + A + +AL D ++ + + + + D+
Sbjct: 436 ILESNGSSSMATVCAGTLALMDAGIKIKAPVSGIAMGLITNPE-------GTKYAILSDI 488
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T+ G IV Q + S + L+ AK+ ++ K
Sbjct: 489 LGDEDHLGDMDFKVTGTEKG-IVACQMDLKINGLSYEVLSKALDQAKEGRLHILNEMKKT 547
Query: 238 I 238
I
Sbjct: 548 I 548
Score = 98.8 bits (244), Expect = 6e-19, Method: Composition-based stats.
Identities = 44/241 (18%), Positives = 81/241 (33%), Gaps = 28/241 (11%)
Query: 7 QENQMREISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITA 61
R I + ++K A+GS +VK GDT LL T +E V + + A
Sbjct: 11 DLGDGRTIEIETGKLAKQADGSVVVKMGDTMLLATVVSTPEAKEGVDFLPLSVDYQEKYA 70
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
G +P R R I R++ RALR + Q
Sbjct: 71 ATGRIPGGFLRR------EARLSDYEVLISRLVDRALRPLFPDDYHADVQ---------- 114
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
+ I+ + DCL + + G ++ + + G +++ +
Sbjct: 115 ---VMISLISADKNIMPDCLAGLAASAAIAVSDIPFNGPISEVRVAKIDGKLVINPTVSD 171
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
++ + S I V+ E + + + A D I ++ Q + ++ E
Sbjct: 172 LERASLEFIVAGSASD-INMVE--GECSEIQEAELVEAIKFAHDAIKIQVQAQVE-LAAE 227
Query: 242 V 242
V
Sbjct: 228 V 228
>gi|27375890|ref|NP_767419.1| polynucleotide phosphorylase/polyadenylase [Bradyrhizobium
japonicum USDA 110]
gi|81740094|sp|Q89WB3|PNP_BRAJA RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|27349028|dbj|BAC46044.1| polyribonucleotide nucleotidyltransferase [Bradyrhizobium japonicum
USDA 110]
Length = 720
Score = 154 bits (388), Expect = 1e-35, Method: Composition-based stats.
Identities = 49/243 (20%), Positives = 90/243 (37%), Gaps = 18/243 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +R I V A GS L G+T + TL +E+ + T
Sbjct: 316 RIDGRDSKTVRNIIAEVGVLPRAHGSALFTRGETQAMVVTTLGTGEDEQYIDALSGTYKE 375
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + R+ G + RA+ V+ I + +
Sbjct: 376 TFLLHYNFPPYSVGETGRLGGTKRREIGHGKL----AWRAIHPVLPPHHEFPYTIRVVSE 431
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ GA +AL D ++ + + +L+ A+ +
Sbjct: 432 ITESNGSSSMASVCGASLALMDAGVPLKRPTAGIAMGLILEDKRFAVLSD---------I 482
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T+SG I +Q + +++ L AKD ++
Sbjct: 483 LGDEDHLGDMDFKVAGTESG-ITSLQMDIKIEGITEEIMKVALGQAKDGRIHILGEMAKA 541
Query: 238 ISN 240
++N
Sbjct: 542 LTN 544
Score = 111 bits (277), Expect = 1e-22, Method: Composition-based stats.
Identities = 35/235 (14%), Positives = 74/235 (31%), Gaps = 28/235 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKHGWITAEYGML 66
R + L +++ A+G+ + +G+T +L T E V + T G +
Sbjct: 14 RPLKLETGKIARQADGAVVATYGETVVLATVVAAKAPREGVDFLPLTVDYQEKTYAAGRI 73
Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
P R GR + + R+I R +R + Q+I +
Sbjct: 74 PGGYFKR------EGRPTEKETLVSRLIDRPIRPLFVDGWRNETQVIATVLSHDMENDPD 127
Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
A+ + A KG + A G + +++ E
Sbjct: 128 IVALVASSAA-------------LTLSGAPFKGPIGAARVGFVNDEYVLNPTLDEMVDTQ 174
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
+D T ++ V+ A+ ++D + +I + ++ +
Sbjct: 175 LDLVVAGTAD-AVLMVESEAKE--LNEDIMLGAVMFGHRHFQPVINAIIE-LAEK 225
>gi|325276169|ref|ZP_08141974.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas sp. TJI-51]
gi|324098706|gb|EGB96747.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas sp. TJI-51]
Length = 701
Score = 154 bits (388), Expect = 1e-35, Method: Composition-based stats.
Identities = 45/243 (18%), Positives = 92/243 (37%), Gaps = 18/243 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +R +++ V GS L G+T L ATL + ++ + K
Sbjct: 316 RIDGRDTKTVRPLNIEVGVLPKTHGSALFTRGETQALVVATLGTARDAQLLDTLEGEKKD 375
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + R+ G + R++++++ + + I + +
Sbjct: 376 PFMLHYNFPPFSVGECGRMGGAGRREIGHGRL----ARRSVQAMLPAADVFPYTIRVVSE 431
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ GA +AL D M+ + V +G A+ +
Sbjct: 432 ITESNGSSSMASVCGASLALMDAGVPMKAPVAGIAMGLVKEGDKFAVLTD---------I 482
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T G + +Q + +++ L A + +++ V
Sbjct: 483 LGDEDHLGDMDFKVAGTAKG-VTALQMDIKINGITEEIMEIALGQALEARLNILGQMNQV 541
Query: 238 ISN 240
I
Sbjct: 542 IGQ 544
Score = 99.5 bits (246), Expect = 4e-19, Method: Composition-based stats.
Identities = 34/234 (14%), Positives = 76/234 (32%), Gaps = 29/234 (12%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTH-LLTTATLEEKVPM----WIRNTKHGWITAEYGMLP 67
++L +++ A G+ LV + +L T ++ + + + T G +P
Sbjct: 15 VTLETGRIARQATGAVLVTVDNDVTVLVTVVGAKQADPGKGFFPLSVHYQEKTYAAGKIP 74
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R GR + R+I R +R + + Q++
Sbjct: 75 GGFFKR------EGRPSEKETLTSRLIDRPIRPLFPEGFMNEVQVVCTVVSTSKKTDPDI 128
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY-PIVDLDYGEDSTID 186
AA+ G A +G + A +++ Y + +
Sbjct: 129 AAMIGTSAA-------------LAISGIPFEGPIGAARVAFHESTGYLLNPTYEQLAASS 175
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
+D T ++ V+ A+ ++D + A D +I+ K++ +
Sbjct: 176 LDMVVAGTSD-AVLMVESEAQE--LTEDQMLGAVLFAHDEFQAVIQAVKELAAE 226
>gi|148549775|ref|YP_001269877.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas putida F1]
gi|187611272|sp|A5W983|PNP_PSEP1 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|148513833|gb|ABQ80693.1| Polyribonucleotide nucleotidyltransferase [Pseudomonas putida F1]
gi|313500616|gb|ADR61982.1| Polyribonucleotide nucleotidyltransferase [Pseudomonas putida
BIRD-1]
Length = 701
Score = 154 bits (388), Expect = 1e-35, Method: Composition-based stats.
Identities = 45/243 (18%), Positives = 92/243 (37%), Gaps = 18/243 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +R +++ V GS L G+T L ATL + ++ + K
Sbjct: 316 RIDGRDTKTVRPLNIEVGVLPKTHGSALFTRGETQALVVATLGTARDAQLLDTLEGEKKD 375
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + R+ G + R++++++ + + I + +
Sbjct: 376 PFMLHYNFPPFSVGECGRMGGAGRREIGHGRL----ARRSVQAMLPAADVFPYTIRVVSE 431
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ GA +AL D M+ + V +G A+ +
Sbjct: 432 ITESNGSSSMASVCGASLALMDAGVPMKAPVAGIAMGLVKEGDKFAVLTD---------I 482
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T G + +Q + +++ L A + +++ V
Sbjct: 483 LGDEDHLGDMDFKVAGTAKG-VTALQMDIKINGITEEIMEIALGQALEARLNILGQMNQV 541
Query: 238 ISN 240
I
Sbjct: 542 IGQ 544
Score = 99.5 bits (246), Expect = 4e-19, Method: Composition-based stats.
Identities = 34/234 (14%), Positives = 76/234 (32%), Gaps = 29/234 (12%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTH-LLTTATLEEKVPM----WIRNTKHGWITAEYGMLP 67
++L +++ A G+ LV + +L T ++ + + + T G +P
Sbjct: 15 VTLETGRIARQATGAVLVTVDNDVTVLVTVVGAKQADPGKGFFPLSVHYQEKTYAAGKIP 74
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R GR + R+I R +R + + Q++
Sbjct: 75 GGFFKR------EGRPSEKETLTSRLIDRPIRPLFPEGFMNEVQVVCTVVSTSKKTDPDI 128
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY-PIVDLDYGEDSTID 186
AA+ G A +G + A +++ Y + +
Sbjct: 129 AAMIGTSAA-------------LAISGIPFEGPIGAARVAFHESTGYLLNPTYEQLAASS 175
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
+D T ++ V+ A+ ++D + A D +I+ K++ +
Sbjct: 176 LDMVVAGTSD-AVLMVESEAQE--LTEDQMLGAVLFAHDEFQAVIQAVKELAAE 226
>gi|157803761|ref|YP_001492310.1| polynucleotide phosphorylase/polyadenylase [Rickettsia canadensis
str. McKiel]
gi|187611280|sp|A8EYU2|PNP_RICCK RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|157785024|gb|ABV73525.1| polyribonucleotide nucleotidyltransferase [Rickettsia canadensis
str. McKiel]
Length = 747
Score = 154 bits (388), Expect = 1e-35, Method: Composition-based stats.
Identities = 45/243 (18%), Positives = 87/243 (35%), Gaps = 18/243 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTT----ATLEEKVPMWIRNTKHG 57
R+ GR +R+I+ + A GS L G+T L + +L+E++ +
Sbjct: 316 RIDGRSTMDIRQIACEVGLLPSAHGSALFTRGETQSLVSSTLGTSLDEQIVDNLEGEYKE 375
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S + +A S R+ G + RA+ ++ I + +
Sbjct: 376 RFMLNYIFPPYSVNEAMPMKAPSRREVGHGKL----AWRAINPILPNKVQFPYSIRVVAE 431
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+++G + A + G+ +AL ++ + V +G A+ +
Sbjct: 432 TTESNGSSSMATVCGSSLALMQTGIPIKAPVAGIAMGLVKEGKKFAVLSD---------I 482
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T G I +Q + + L A+ +++ V
Sbjct: 483 LGDEDYFGDMDFKVAGTSEG-ITALQMDIKISGVDFKIMKVALEQARLGRLHILEQMNKV 541
Query: 238 ISN 240
IS
Sbjct: 542 ISK 544
Score = 93.0 bits (229), Expect = 3e-17, Method: Composition-based stats.
Identities = 42/233 (18%), Positives = 85/233 (36%), Gaps = 28/233 (12%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTKHGWITAEYGMLPR 68
+ L+ +++ A+GS VK G++ LL TA T +E + + + + G +P
Sbjct: 16 LELSTGKIARQADGSVTVKMGNSVLLCTAVVANTAKEGIGFFPLTINYREMAYAVGKIPG 75
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
R G+ R + R+I R +R + + + + +
Sbjct: 76 GFFKR------EGKASEREVLVSRLIDRPIRPLFHPAFVNETHVTCTVLSYDPETPVDIL 129
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
AI GA AL + VAA G++ G +++ T +D
Sbjct: 130 AIIGASAALALSPAPYLEI-------------VAASKVGLINGEFVLNPTLELLKTSQLD 176
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
T ++ V+ +E S+ + + ++K+ K+ ++ E
Sbjct: 177 LVVAGTTE-SVMMVE--SEAHLLSEAQMLEAVKFGFESFQPVVKIIKE-LAEE 225
>gi|317124457|ref|YP_004098569.1| RNAse PH [Intrasporangium calvum DSM 43043]
gi|315588545|gb|ADU47842.1| RNAse PH [Intrasporangium calvum DSM 43043]
Length = 256
Score = 154 bits (388), Expect = 1e-35, Method: Composition-based stats.
Identities = 115/239 (48%), Positives = 155/239 (64%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R GR ++ RE+ +TR +AEGS LV+FG T +L A+ E VP W++ GW+TA
Sbjct: 11 RHDGRAPDETREVRITRGWLDHAEGSVLVEFGRTRVLCAASFTEGVPRWLKGRGTGWVTA 70
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
EY MLPR+T R RE+V GR GGR+ EI R+IGR+LR+V+D ALG I++DCDV+QA
Sbjct: 71 EYAMLPRATNTRSDRESVKGRIGGRTHEISRLIGRSLRAVIDTKALGENTIVLDCDVLQA 130
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
DGGTRTAAITGA+VAL D ++ + +Q L G VAA+S G++ G ++DLDY E
Sbjct: 131 DGGTRTAAITGAYVALADAIEDARARGLIAKGAQPLTGSVAAVSVGIVGGRAVIDLDYPE 190
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
DST + D N VMT G +EVQG+AE F + +L LA ADL Q+ +++
Sbjct: 191 DSTAETDMNVVMTGDGRYIEVQGTAEGEPFDRALLDDLLELAAKGCADLTAAQRAALAS 249
>gi|154254063|ref|YP_001414887.1| polynucleotide phosphorylase/polyadenylase [Parvibaculum
lavamentivorans DS-1]
gi|187610324|sp|A7HZ97|PNP_PARL1 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|154158013|gb|ABS65230.1| Polyribonucleotide nucleotidyltransferase [Parvibaculum
lavamentivorans DS-1]
Length = 728
Score = 154 bits (388), Expect = 1e-35, Method: Composition-based stats.
Identities = 46/241 (19%), Positives = 85/241 (35%), Gaps = 18/241 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +R I V GS L G+T L ATL +E+ + T
Sbjct: 316 RIDGRDLETVRPIVSEVGVLPRTHGSALFTRGETQALVVATLGTGDDEQFIDALEGTYKE 375
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + R+ G + RALR+V+ + + +
Sbjct: 376 NFLLHYNFPPFSVGETGRVGFTGRREVGHGKL----AWRALRAVLPPKTEFPYTLRLVSE 431
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A + G+ +A+ D ++ + +L+G A+ +
Sbjct: 432 ITESNGSSSMATVCGSSLAMMDAGVPLKRAVAGIAMGLILEGERFAVLSD---------I 482
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T G + +Q + ++ L AK ++
Sbjct: 483 LGDEDHLGDMDFKVAGTQEG-VTSLQMDIKITGINERIMKQALAQAKGGRLHILGEMAKA 541
Query: 238 I 238
+
Sbjct: 542 L 542
Score = 116 bits (291), Expect = 2e-24, Method: Composition-based stats.
Identities = 38/228 (16%), Positives = 70/228 (30%), Gaps = 27/228 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----HGWITAEYGML 66
R + L +++ A+G+ L +GDT +L T E K + + T G +
Sbjct: 14 RTLVLETGKIARQADGAVLATYGDTTVLATVVGERKPKPGLDFFPLTVNYQEKTYAAGKI 73
Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
P R GR + + R+I R +R + Q+I +
Sbjct: 74 PGGFFKR------EGRPSEKETLVSRLIDRPIRPLFIKGFKNETQVIATVVSHDMENDPD 127
Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
A+ A G + A G + G ++ E
Sbjct: 128 IVAMIAVSAA-------------LTISGLPFLGPIGAARVGYIGGEYKLNPMIDEMPESA 174
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
+D T ++ V+ A+ S+D + +I +
Sbjct: 175 LDLVVAGTAD-AVMMVESEAKE--LSEDIMLGAVMFGHKEFQPVIDMI 219
>gi|34763065|ref|ZP_00144038.1| Polyribonucleotide nucleotidyltransferase [Fusobacterium nucleatum
subsp. vincentii ATCC 49256]
gi|27887264|gb|EAA24362.1| Polyribonucleotide nucleotidyltransferase [Fusobacterium nucleatum
subsp. vincentii ATCC 49256]
Length = 699
Score = 154 bits (388), Expect = 1e-35, Method: Composition-based stats.
Identities = 46/243 (18%), Positives = 90/243 (37%), Gaps = 18/243 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR ++R + V GS L G+T L TL +E++ + +
Sbjct: 324 RVDGRTTTEIRPLDAQINVLPIPHGSALFTRGETQSLAITTLGTKEDEQLIDDLEKEYYK 383
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + + R+ G RAL V+ I + +
Sbjct: 384 KFYLHYNFPPYSVGEVGRMGSPGRRELGHGSL----AERALSYVIPSEEEFPYTIRVVSE 439
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A+I G ++L +++ + + +G + ++
Sbjct: 440 ITESNGSSSQASICGGSLSLMSAGVPIKEHVAGIAMGLIKEGEEFTVLTDIM-------- 491
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T SG I +Q + +++ LN A + +++L +
Sbjct: 492 -GLEDHLGDMDFKVAGTKSG-ITALQMDIKITGITEEIMRIALNQAHEARIQILELMNNT 549
Query: 238 ISN 240
IS
Sbjct: 550 ISK 552
Score = 98.8 bits (244), Expect = 6e-19, Method: Composition-based stats.
Identities = 37/230 (16%), Positives = 78/230 (33%), Gaps = 27/230 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGML 66
R + ++ +S+ + G+ ++++GDT LL+TA + + + G
Sbjct: 14 RTLKVSTGKISRQSSGAIVIQYGDTVLLSTANRSKEARKGADFFPLTVDYIEKFYSSGKF 73
Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
P R GR + + R+I R +R + I+
Sbjct: 74 PGGFNKR------EGRPSTNATLVARLIDRPIRPMFPDGFNYDVHIVNTVLSYDEINIPD 127
Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
+ G+ +AL G VA++ G G I++ E +
Sbjct: 128 YLGVIGSSLALM-------------ISDIPFLGPVASVIVGYKNGEFILNPSPKELEESE 174
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+D T + V+ A+ ++ + A + I + + Q++
Sbjct: 175 LDLIVAGTKE-AVNMVEAGAKE--LDEETMLKAIMFAHENIKKICEFQEE 221
>gi|16800436|ref|NP_470704.1| polynucleotide phosphorylase/polyadenylase [Listeria innocua
Clip11262]
gi|81526977|sp|Q92C23|PNP_LISIN RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|16413841|emb|CAC96599.1| polynucleotide phosphorylase (PNPase) [Listeria innocua Clip11262]
Length = 723
Score = 154 bits (388), Expect = 1e-35, Method: Composition-based stats.
Identities = 51/244 (20%), Positives = 89/244 (36%), Gaps = 18/244 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
+R GR+ N++R +S + GS L G T L+ TL E ++ + ++
Sbjct: 316 IRPDGRKVNEIRPLSSEVGMLPRVHGSGLFTRGQTQALSVCTLAPLREHQIIDGLGTEEY 375
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y S G R A R+ G RAL+ V+ I +
Sbjct: 376 KRFMHHYNFPQFSVGETGPRRAPGRREIGHGALG----ERALQYVIPSEEEFPYTIRLVS 431
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V++++G + A+I G+ +A+ D ++ + V G I
Sbjct: 432 EVLESNGSSSQASICGSTLAMLDAGVPIKAPVAGIAMGLVKLGDDYTILSD--------- 482
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T G I +Q + S+ L AK+ +++
Sbjct: 483 IQGMEDHFGDMDFKVAGTKDG-ITALQMDIKIDGLSRQILDEALTQAKEGRLHILEHLTS 541
Query: 237 VISN 240
IS
Sbjct: 542 TISE 545
Score = 111 bits (276), Expect = 1e-22, Method: Composition-based stats.
Identities = 44/230 (19%), Positives = 83/230 (36%), Gaps = 26/230 (11%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKV---PMWIRNTKHGWITAEYGMLPRS 69
+S+ ++K A G+ L+++GDT +LT A +K + + G +P
Sbjct: 16 LSVEVGQLAKQASGAALIRYGDTVVLTAAVGSKKPRPGDFFPLTVNYEEKMYSVGKVPGG 75
Query: 70 TGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAA 129
R GR R+ R+I R +R + QI + D AA
Sbjct: 76 FLKR------EGRPSDRATLTARLIDRPIRPLFAEGFRNEVQITSTVFSVDQDCSPEMAA 129
Query: 130 ITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDA 189
+ G+ VA +G +A + G + G +++ + D+
Sbjct: 130 MLGSSVA-------------LVISDIPFEGPIAGVDVGRIDGKYVINPTIEQAEKSDISL 176
Query: 190 NFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
T I V+ A+ S++ + + I L + Q+ +I+
Sbjct: 177 TVAGTYD-AINMVEAGAKE--VSEEAMLEAIMFGHEEIKRLCEFQQQIIA 223
>gi|325499450|gb|EGC97309.1| ribonuclease PH [Escherichia fergusonii ECD227]
Length = 228
Score = 154 bits (388), Expect = 1e-35, Method: Composition-based stats.
Identities = 119/230 (51%), Positives = 158/230 (68%), Gaps = 2/230 (0%)
Query: 11 MREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRST 70
MR ++LTR +K+AEGS LV+FGDT +L TA++EE VP +++ GWITAEYGMLPRST
Sbjct: 1 MRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWITAEYGMLPRST 60
Query: 71 GNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAI 130
R REA G+QGGR+ EIQR+I RALR+ VDL ALG I +DCDV+QADGGTRTA+I
Sbjct: 61 HTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQADGGTRTASI 120
Query: 131 TGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDAN 190
TGA VAL D L + + + +KG VAA+S G++ G + DL+Y EDS + D N
Sbjct: 121 TGACVALADALNKLVEN--GKLKTNPMKGMVAAVSVGIVNGEAVCDLEYVEDSAAETDMN 178
Query: 191 FVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
VMT+ G I+EVQG+AE F+ + +L LA+ I ++ QK ++N
Sbjct: 179 VVMTEDGRIIEVQGTAEGEPFTHEELLTLLALARGGIESIVATQKAALAN 228
>gi|183601855|ref|ZP_02963224.1| probable ribonuclease PH [Bifidobacterium animalis subsp. lactis
HN019]
gi|219682769|ref|YP_002469152.1| ribonuclease PH [Bifidobacterium animalis subsp. lactis AD011]
gi|183218740|gb|EDT89382.1| probable ribonuclease PH [Bifidobacterium animalis subsp. lactis
HN019]
gi|219620419|gb|ACL28576.1| ribonuclease PH [Bifidobacterium animalis subsp. lactis AD011]
gi|289178068|gb|ADC85314.1| Ribonuclease PH [Bifidobacterium animalis subsp. lactis BB-12]
Length = 246
Score = 154 bits (388), Expect = 1e-35, Method: Composition-based stats.
Identities = 104/228 (45%), Positives = 145/228 (63%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R GR +++R + +TR + EGS L++ G+T ++ TAT + VP W +++ GW+TA
Sbjct: 5 RADGRAYDELRPVRITRAFTDVPEGSVLIECGNTRVMCTATFTDTVPRWRKDSGLGWVTA 64
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
EY MLPR+T R RE+V G+ GGR+ EI R+IGR LR V+D+ ALG I +DCDV+QA
Sbjct: 65 EYSMLPRATAQRTDRESVRGKVGGRTHEISRLIGRCLRGVIDMKALGENTIQMDCDVLQA 124
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
DGGTRTA+ITGA VAL D L + + VL V+A+S G++ G P++DL Y E
Sbjct: 125 DGGTRTASITGAHVALVDALNWAKQNGKIKSVKNVLLDSVSAVSVGVIDGEPMLDLPYVE 184
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIAD 229
DS D N MT SG VE+QG+AE FS++ +L+LA +
Sbjct: 185 DSRAMTDMNVAMTGSGKFVEIQGTAEHRPFSRNELGVLLDLATKGNRE 232
>gi|115377533|ref|ZP_01464733.1| ribonuclease PH [Stigmatella aurantiaca DW4/3-1]
gi|115365473|gb|EAU64508.1| ribonuclease PH [Stigmatella aurantiaca DW4/3-1]
Length = 276
Score = 154 bits (388), Expect = 1e-35, Method: Composition-based stats.
Identities = 114/239 (47%), Positives = 149/239 (62%), Gaps = 2/239 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+R R +R ++LT VS++AEGS V+FG T ++ T ++EE+VP + GW+T
Sbjct: 40 VRSFQRGVLDLRPVTLTPGVSRHAEGSAQVEFGHTRVIVTCSVEERVPPHLMGKGTGWVT 99
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPRST R REA G+Q GR+ EIQR+IGR++R+ V+LS LG R + +DCDVIQ
Sbjct: 100 AEYGMLPRSTHTRSPREAAKGKQSGRTMEIQRLIGRSMRAAVNLSTLGPRTLTLDCDVIQ 159
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+ITGA+VAL L+ + S +AA+S G++ G VDLDY
Sbjct: 160 ADGGTRTASITGAYVALVMALRSL--NSKGTLSRMPSLTPLAAVSVGVVKGEVRVDLDYE 217
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
EDS DVD N V T G IVEVQG+AE F + AML+ I L Q V+
Sbjct: 218 EDSAADVDLNLVATGDGRIVEVQGTAEHQLFDRKALDAMLDGGMAAIQQLTAAQAKVLG 276
>gi|295399860|ref|ZP_06809841.1| polyribonucleotide nucleotidyltransferase [Geobacillus
thermoglucosidasius C56-YS93]
gi|294978263|gb|EFG53860.1| polyribonucleotide nucleotidyltransferase [Geobacillus
thermoglucosidasius C56-YS93]
Length = 712
Score = 154 bits (388), Expect = 1e-35, Method: Composition-based stats.
Identities = 44/244 (18%), Positives = 84/244 (34%), Gaps = 18/244 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56
+R GR+ +++R +S V GS L G T +L+ T + ++ + +
Sbjct: 315 IRPDGRKVDEIRPLSSAVGVLPRTHGSGLFTRGQTQVLSVCTLGALGDVQILDGLGIEET 374
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P S G R+ G RAL VV I +
Sbjct: 375 KRFMHHYNFPPFSVGETGPMRGPGRREIGHGALG----ERALEPVVPSEKEFPYTIRLVS 430
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V++++G T A+I + +A+ D ++ + V + D
Sbjct: 431 EVLESNGSTSQASICASTLAMMDAGVPIKAPVAGIAMGLVKNDD---------HYTILTD 481
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T G + +Q + +++ L A+ +++
Sbjct: 482 IQGIEDHLGDMDFKVAGTRKG-VTALQMDIKIKGLTREILEEALLQARKGRMEILDHMMQ 540
Query: 237 VISN 240
I
Sbjct: 541 TIRE 544
Score = 114 bits (286), Expect = 9e-24, Method: Composition-based stats.
Identities = 43/230 (18%), Positives = 86/230 (37%), Gaps = 26/230 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEK---VPMWIRNTKHGWITAEYGMLP 67
R + + ++K A G+ LV++GDT +L+TAT ++ V + + G +P
Sbjct: 15 RPLVVEIGELAKQANGAVLVRYGDTVVLSTATASKEAKNVDFFPLTVNYEERLYAVGKIP 74
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R GR ++ R+I R +R + QI+ + D
Sbjct: 75 GGFIKR------EGRPSEKAILASRLIDRPIRPLFSEGFRNEVQIVSMVMSVDQDCSPEM 128
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
AA+ G+ +A +G +A ++ G + G +++ + D+
Sbjct: 129 AALLGSSLA-------------LTISDIPFEGPIAGVTVGRVDGKFVINPTVEQSEKSDI 175
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
T I V+ A+ ++ + + I LI Q+++
Sbjct: 176 HLVVAGTKD-AINMVEAGADEVP--EEIMLEAIMFGHEDIKRLIAFQEEI 222
>gi|294784756|ref|ZP_06750044.1| polyribonucleotide nucleotidyltransferase [Fusobacterium sp.
3_1_27]
gi|294486470|gb|EFG33832.1| polyribonucleotide nucleotidyltransferase [Fusobacterium sp.
3_1_27]
Length = 699
Score = 154 bits (388), Expect = 1e-35, Method: Composition-based stats.
Identities = 46/243 (18%), Positives = 90/243 (37%), Gaps = 18/243 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR ++R + V GS L G+T L TL +E++ + +
Sbjct: 324 RVDGRTTTEIRPLDAQINVLPIPHGSALFTRGETQSLAITTLGTKEDEQLIDDLEKEYYK 383
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + + R+ G RAL V+ I + +
Sbjct: 384 KFYLHYNFPPYSVGEVGRMGSPGRRELGHGSL----AERALSYVIPSEEEFPYTIRVVSE 439
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A+I G ++L +++ + + +G + ++
Sbjct: 440 ITESNGSSSQASICGGSLSLMSAGVPIKEHVAGIAMGLIKEGEEFTVLTDIM-------- 491
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T SG I +Q + +++ LN A + +++L +
Sbjct: 492 -GLEDHLGDMDFKVAGTKSG-ITALQMDIKITGITEEIMRIALNQAHEARIQILELMNNT 549
Query: 238 ISN 240
IS
Sbjct: 550 ISK 552
Score = 98.4 bits (243), Expect = 8e-19, Method: Composition-based stats.
Identities = 37/230 (16%), Positives = 78/230 (33%), Gaps = 27/230 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGML 66
R + ++ +S+ + G+ ++++GDT LL+TA + + + G
Sbjct: 14 RTLKVSTGKISRQSSGAIVIQYGDTVLLSTANRSKEARKGSDFFPLTVDYIEKFYSSGKF 73
Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
P R GR + + R+I R +R + I+
Sbjct: 74 PGGFNKR------EGRPSTNATLVARLIDRPIRPMFPDGFNYDVHIVNTVLSYDEINIPD 127
Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
+ G+ +AL G VA++ G G I++ E +
Sbjct: 128 YLGVIGSSLALM-------------ISDIPFLGPVASVIVGYKNGEFILNPSPKELEESE 174
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+D T + V+ A+ ++ + A + I + + Q++
Sbjct: 175 LDLIVAGTKE-AVNMVEAGAKE--LDEETMLKAIMFAHENIKKICEFQEE 221
>gi|332970461|gb|EGK09453.1| polyribonucleotide nucleotidyltransferase [Kingella kingae ATCC
23330]
Length = 708
Score = 154 bits (388), Expect = 1e-35, Method: Composition-based stats.
Identities = 44/242 (18%), Positives = 92/242 (38%), Gaps = 18/242 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +R +++ V GS L G+T L ATL +E++ +
Sbjct: 316 RIDGRDTRTVRPLNIQTNVLPRTHGSALFTRGETQALAVATLGTSRDEQIIDALSGEYTD 375
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P STG + A R+ G + RAL +V+ S + + +
Sbjct: 376 RFMLHYNFPPYSTGEVGRVGAPKRREIGHGRL----AKRALVAVLPKPEDFSYTMRVVSE 431
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ G ++L ++ + +L+ + A+ +
Sbjct: 432 ITESNGSSSMASVCGGCLSLLSAGVPLKAHVAGIAMGLILEDNKFAVLTD---------I 482
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T G + +Q + +++ L AK+ ++ +
Sbjct: 483 LGDEDHLGDMDFKVAGTTEG-VTALQMDIKIQGITKEIMQIALAQAKEARLHILAQMQTA 541
Query: 238 IS 239
++
Sbjct: 542 VA 543
Score = 96.5 bits (238), Expect = 3e-18, Method: Composition-based stats.
Identities = 37/234 (15%), Positives = 79/234 (33%), Gaps = 28/234 (11%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGMLPR 68
++L +++ A + V GDT +L T ++E + + T G +P
Sbjct: 16 VTLETGEIARQAAAAVKVSMGDTVVLVAVTTNKDIKEGQDFFPLTVDYFERTYAAGKIPG 75
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
R G+Q + R+I R +R + QI+ + +
Sbjct: 76 GFFKR------EGKQSEKEILTSRLIDRPIRPLFPEGFYHDIQIVAMVISCDPEIDSDIP 129
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+ GA A G + A G + +++ + S +D
Sbjct: 130 AMIGASAA-------------LVLSGVPFAGPIGAARVGYVNNAYVLNPTKQQLSRSQLD 176
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNEV 242
T+ ++ V+ A+ +D + +++ +I + ++ EV
Sbjct: 177 LVVAGTEQ-AVLMVESEADI--LPEDVMLGAVVFGHEQMQTVITAINE-LAQEV 226
>gi|281412875|ref|YP_003346954.1| polyribonucleotide nucleotidyltransferase [Thermotoga naphthophila
RKU-10]
gi|281373978|gb|ADA67540.1| polyribonucleotide nucleotidyltransferase [Thermotoga naphthophila
RKU-10]
Length = 708
Score = 154 bits (388), Expect = 1e-35, Method: Composition-based stats.
Identities = 45/243 (18%), Positives = 86/243 (35%), Gaps = 18/243 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
+R GR+ ++R IS + GS L G+T L TL + ++ +
Sbjct: 316 IRADGRKPTEIRPISCEVGLFPRTHGSALFTRGETQSLGIVTLGAPMDVQIIDTLLEEGV 375
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P TG S R+ G RAL++++ I +
Sbjct: 376 KRFMLHYNFPPFCTGEVKPLRGPSRREIGHGHL----AERALKNILPPEEEFPYTIRVVS 431
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
++++++G + A + +AL D ++ + +L+ + D
Sbjct: 432 EILESNGSSSMATVCSGSLALMDAGVPIKKHVAGIAMGLILEEDA---------EIILTD 482
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T G I Q + + S + L A++ ++ +
Sbjct: 483 IIGMEDHYGDMDFKVAGTRDG-ITAFQMDCKVSGVSDELLMKALMQAREARMYILDRMYE 541
Query: 237 VIS 239
IS
Sbjct: 542 TIS 544
Score = 109 bits (271), Expect = 4e-22, Method: Composition-based stats.
Identities = 49/234 (20%), Positives = 83/234 (35%), Gaps = 27/234 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKHGWITAEYGML 66
RE+ + V+K + GS LV+FGDT +L TA + E V + G +
Sbjct: 11 RELVVQYGKVAKQSSGSVLVRFGDTVVLATANISDKAVEGVDFVPLTVEFQERFYAAGKI 70
Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
P R G+ + R+I R +R + Q+I+ +
Sbjct: 71 PGGFIKR------EGKPSESAILSARLIDRPIRPLFPKKLRNEVQVIVTVLSVDPSIPPD 124
Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
I A +AL+ +G VA I G G I +
Sbjct: 125 VVGIFAASLALN-------------VSKIPFEGVVAGIRVGYRDGQFIALPSEEDIEKGL 171
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
+D T + V+G A+ +++ L A I +L+ Q++++S
Sbjct: 172 MDITVAGTKD-AVTMVEGEAKE--VTEEDMVKALRFAHSVIKELVDFQEEILSE 222
>gi|225630576|ref|YP_002727367.1| Polyribonucleotide nucleotidyltransferase [Wolbachia sp. wRi]
gi|254782747|sp|C0R3T4|PNP_WOLWR RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|225592557|gb|ACN95576.1| Polyribonucleotide nucleotidyltransferase [Wolbachia sp. wRi]
Length = 757
Score = 154 bits (388), Expect = 1e-35, Method: Composition-based stats.
Identities = 44/245 (17%), Positives = 88/245 (35%), Gaps = 18/245 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTT----ATLEEKVPMWIRNTKH 56
+R+ GR+ +++R+I + + GS L G+T L T +E++ I +
Sbjct: 310 VRIDGRKHDEIRQIEVEVDILSKTHGSALFTRGNTQALVVTALGTTQDEQIVDDIEGDRR 369
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y + G A R+ G + +A+ V+ + I +
Sbjct: 370 EHFMLHYNFPSFAVGETSAARAPGRREIGHGKL----AWKAIHPVLPDKSEFPYTIRVVS 425
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+++++DG + A + G +AL D ++ + + I
Sbjct: 426 EILESDGSSSMATVCGTSLALMDTGVPIKAPVAGIAMGLIKDKDEYVILSD--------- 476
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T G + +Q + + S + L AK +++
Sbjct: 477 ILGDEDYLGDMDFKVAGTSEG-VTALQMDMKISGISFEIVEKSLEQAKAGRLHILEKMNA 535
Query: 237 VISNE 241
VIS
Sbjct: 536 VISEH 540
Score = 104 bits (259), Expect = 1e-20, Method: Composition-based stats.
Identities = 45/229 (19%), Positives = 80/229 (34%), Gaps = 25/229 (10%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATL---EEKVPMWIRNTKHGWITAEYGMLP 67
R +SL +++ A GS +V +GDT +L T EE V N + + G +P
Sbjct: 14 RTLSLETGKIARQAHGSVVVNYGDTSVLVTVVSKKKEENVDFLPLNVQFIAKSYAMGKIP 73
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R G+ R I R+I R++R + ++ +
Sbjct: 74 GGFFKR------EGKPSDRETLISRVIDRSIRPLFPEGFHDEISVVCNLLTYDTVNPPEV 127
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
A+ GA AL + I++ E +
Sbjct: 128 PALIGAVAALAISGVPFHFTIAGV------------MVGCDENNNYILNPSVQEMKASSL 175
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
D F+ D I+ V+ +E S+++ F + + + +IKL K+
Sbjct: 176 DL-FLSGDENSILMVE--SEVKELSEENVFNAIKFGHEHLKPVIKLIKE 221
>gi|313159231|gb|EFR58601.1| polyribonucleotide nucleotidyltransferase [Alistipes sp. HGB5]
Length = 744
Score = 154 bits (388), Expect = 1e-35, Method: Composition-based stats.
Identities = 50/244 (20%), Positives = 89/244 (36%), Gaps = 16/244 (6%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56
+RL GR+ +++R I A GS + G+T LT+ T L+EK +
Sbjct: 323 LRLDGRKTDEIRPIWCEVDYLPAAHGSAIFTRGETQSLTSVTLGTKLDEKQKDEVLVQGT 382
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P STG +S R+ G RAL+ +V L + +
Sbjct: 383 EQFVLHYNFPPFSTGEAKAARGLSRREIGHGHL----AWRALKPMVPLGEENPYAVRVVS 438
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
D+++++G + A + +AL D ++ + + + + D
Sbjct: 439 DILESNGSSSMATVCAGTLALMDAGVKLKKPVSGIAMGLISDSQSG-------KWAVLSD 491
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T G I Q + S + A L A+ ++ +
Sbjct: 492 ILGDEDHLGDMDFKVTGTKDG-ITATQMDIKVDGLSYEVLAAALEQARKGRLHILGKLTE 550
Query: 237 VISN 240
I+
Sbjct: 551 CIAE 554
Score = 104 bits (258), Expect = 1e-20, Method: Composition-based stats.
Identities = 45/241 (18%), Positives = 80/241 (33%), Gaps = 28/241 (11%)
Query: 7 QENQMREISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----HGWITA 61
R+I + ++K A+GS +VK GDT LL T + + A
Sbjct: 15 TLADGRQIEIETGKLAKQADGSVVVKQGDTMLLATVVAAKDAKPDTDFMPLQVEYKEKYA 74
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
G P R GR + R+I RALR + +
Sbjct: 75 SCGRYPGGFMKR------EGRANDSEILVARLIDRALRPLFPADYHAEVYVT-------- 120
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
I+ D L + + G ++ + L G +++ + E
Sbjct: 121 -----VNLISADKDIQPDALAGLAASAALAVSDIPFGGPISEVRVARLDGEYVINPKFSE 175
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
+D+D T +I+ V+ E S++ + A + I +Q + +S E
Sbjct: 176 MDRVDLDIMVGGTID-NILMVE--GEMKEVSEEVMLGAIKFAHEEIKKHCAVQIE-LSKE 231
Query: 242 V 242
+
Sbjct: 232 L 232
>gi|222110082|ref|YP_002552346.1| polynucleotide phosphorylase/polyadenylase [Acidovorax ebreus TPSY]
gi|254782718|sp|B9MEL0|PNP_DIAST RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|221729526|gb|ACM32346.1| polynucleotide phosphorylase, phosphorolytic RNA-binding
[Acidovorax ebreus TPSY]
Length = 727
Score = 154 bits (388), Expect = 1e-35, Method: Composition-based stats.
Identities = 43/243 (17%), Positives = 89/243 (36%), Gaps = 18/243 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +R I + V GS L G+T L +TL + + +
Sbjct: 317 RIDGRDTRTVRPIEIRNSVLPRTHGSALFTRGETQALVVSTLGTERDAQRIDALAGEFED 376
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y M P +TG + + R+ G + RAL + + I + +
Sbjct: 377 RFIFHYNMPPFATGEVGRMGSTKRREIGHGRL----AKRALVACLPSKDEFPYTIRVVSE 432
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ G ++L D M+ + + + + A+ +
Sbjct: 433 ITESNGSSSMASVCGGCLSLMDAGVPMKAHVAGIAMGLIKEDNRFAVLTD---------I 483
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T +G I +Q + +++ L AK+ ++ ++
Sbjct: 484 LGDEDHLGDMDFKVAGTTNG-ITALQMDIKIQGITKEIMQVALAQAKEARMHILGKMQEA 542
Query: 238 ISN 240
+
Sbjct: 543 MGE 545
Score = 95.7 bits (236), Expect = 6e-18, Method: Composition-based stats.
Identities = 33/233 (14%), Positives = 74/233 (31%), Gaps = 31/233 (13%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT----KHGWITAEYGMLPR 68
+ + +++ A G+ LV DT +L T ++ + T G +P
Sbjct: 18 VVMETGEIARQASGAVLVNIDDTVVLATVVGSKQAKPGQDFFPLTVDYIEKTYAAGKIPG 77
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
S R + R+I R +R + ++I + + A
Sbjct: 78 SFFKR------EAKPSELETLTSRLIDRPIRPLFPEGFYNEVHVVIHTISLNPEVDADIA 131
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+ A G + A G + G +++ + +D
Sbjct: 132 AMIAVSAA-------------LSVSGIPFNGPIGAARVGYVNGEYVLNPGQTARKSSQLD 178
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKD----RIADLIKLQKDV 237
T++ ++ V+ A++ S++ + + I + +L +D
Sbjct: 179 LVVAGTEA-AVLMVESEAQQ--LSEEIMLGAVVFGHEQGKVAINAIHELVRDA 228
>gi|121593373|ref|YP_985269.1| polynucleotide phosphorylase/polyadenylase [Acidovorax sp. JS42]
gi|187470958|sp|A1W4L8|PNP_ACISJ RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|120605453|gb|ABM41193.1| 3' exoribonuclease [Acidovorax sp. JS42]
Length = 727
Score = 154 bits (388), Expect = 1e-35, Method: Composition-based stats.
Identities = 43/243 (17%), Positives = 89/243 (36%), Gaps = 18/243 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +R I + V GS L G+T L +TL + + +
Sbjct: 317 RIDGRDTRTVRPIEIRNSVLPRTHGSALFTRGETQALVVSTLGTERDAQRIDALAGEFED 376
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y M P +TG + + R+ G + RAL + + I + +
Sbjct: 377 RFIFHYNMPPFATGEVGRMGSTKRREIGHGRL----AKRALVACLPSKDEFPYTIRVVSE 432
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ G ++L D M+ + + + + A+ +
Sbjct: 433 ITESNGSSSMASVCGGCLSLMDAGVPMKAHVAGIAMGLIKEDNRFAVLTD---------I 483
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T +G I +Q + +++ L AK+ ++ ++
Sbjct: 484 LGDEDHLGDMDFKVAGTTNG-ITALQMDIKIQGITKEIMQVALAQAKEARMHILGKMQEA 542
Query: 238 ISN 240
+
Sbjct: 543 MGE 545
Score = 95.7 bits (236), Expect = 6e-18, Method: Composition-based stats.
Identities = 33/233 (14%), Positives = 74/233 (31%), Gaps = 31/233 (13%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT----KHGWITAEYGMLPR 68
+ + +++ A G+ LV DT +L T ++ + T G +P
Sbjct: 18 VVMETGEIARQASGAVLVNIDDTVVLATVVGSKQAKPGQDFFPLTVDYIEKTYAAGKIPG 77
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
S R + R+I R +R + ++I + + A
Sbjct: 78 SFFKR------EAKPSELETLTSRLIDRPIRPLFPEGFYNEVHVVIHTISLNPEVDADIA 131
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+ A G + A G + G +++ + +D
Sbjct: 132 AMIAVSAA-------------LSVSGIPFNGPIGAARVGYVNGEYVLNPGQTARKSSQLD 178
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKD----RIADLIKLQKDV 237
T++ ++ V+ A++ S++ + + I + +L +D
Sbjct: 179 LVVAGTEA-AVLMVESEAQQ--LSEEIMLGAVVFGHEQGKVAINAIHELVRDA 228
>gi|312111628|ref|YP_003989944.1| polyribonucleotide nucleotidyltransferase [Geobacillus sp. Y4.1MC1]
gi|311216729|gb|ADP75333.1| polyribonucleotide nucleotidyltransferase [Geobacillus sp. Y4.1MC1]
Length = 712
Score = 153 bits (387), Expect = 1e-35, Method: Composition-based stats.
Identities = 44/244 (18%), Positives = 84/244 (34%), Gaps = 18/244 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56
+R GR+ +++R +S V GS L G T +L+ T + ++ + +
Sbjct: 315 IRPDGRKVDEIRPLSSAVGVLPRTHGSGLFTRGQTQVLSVCTLGALGDVQILDGLGIEET 374
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P S G R+ G RAL VV I +
Sbjct: 375 KRFMHHYNFPPFSVGETGPMRGPGRREIGHGALG----ERALEPVVPSEKEFPYTIRLVS 430
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V++++G T A+I + +A+ D ++ + V + D
Sbjct: 431 EVLESNGSTSQASICASTLAMMDAGVPIKAPVAGIAMGLVKNDD---------HYTILTD 481
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T G + +Q + +++ L A+ +++
Sbjct: 482 IQGIEDHLGDMDFKVAGTRKG-VTALQMDIKIKGLTREILEEALLQARKGRMEILDHMMQ 540
Query: 237 VISN 240
I
Sbjct: 541 TIRE 544
Score = 114 bits (285), Expect = 9e-24, Method: Composition-based stats.
Identities = 43/230 (18%), Positives = 86/230 (37%), Gaps = 26/230 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEK---VPMWIRNTKHGWITAEYGMLP 67
R + + ++K A G+ LV++GDT +L+TAT ++ V + + G +P
Sbjct: 15 RPLVVEIGELAKQANGAVLVRYGDTVVLSTATASKEAKNVDFFPLTVNYEERLYAVGKIP 74
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R GR ++ R+I R +R + QI+ + D
Sbjct: 75 GGFIKR------EGRPSEKAILASRLIDRPIRPLFSEGFRNEVQIVSMVMSVDQDCSPEM 128
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
AA+ G+ +A +G +A ++ G + G +++ + D+
Sbjct: 129 AALLGSSLA-------------LTISDIPFEGPIAGVTVGRVDGKFVINPTVEQSEKSDI 175
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
T I V+ A+ ++ + + I LI Q+++
Sbjct: 176 HLVVAGTKD-AINMVEAGADEVP--EEIMLEAIMFGHEDIKRLIAFQEEI 222
>gi|205356272|ref|ZP_03223038.1| polyribonucleotide nucleotidyltransferase [Campylobacter jejuni
subsp. jejuni CG8421]
gi|205345877|gb|EDZ32514.1| polyribonucleotide nucleotidyltransferase [Campylobacter jejuni
subsp. jejuni CG8421]
Length = 719
Score = 153 bits (387), Expect = 1e-35, Method: Composition-based stats.
Identities = 46/245 (18%), Positives = 84/245 (34%), Gaps = 22/245 (8%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWI------RNTK 55
R GR N++R IS+ + A GSCL G T L ATL + + +N
Sbjct: 336 RADGRSLNEVRPISIETNILPNAHGSCLFTRGQTQALVVATLGGENDSQMIDLLTEKNPI 395
Query: 56 HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115
Y S G +A R+ G RAL V I +
Sbjct: 396 SERFMVNYNFPGFSVGEASPIKAPGRRELGHGNL----AKRALYPSV--DENYPYVIRLV 449
Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIV 175
++++++G + A + G +AL + + + + A+ ++
Sbjct: 450 SEILESNGSSSMATVCGGSLALKAAGVPSLKLVAGVAMGLIFEDNKYAVLTDIM------ 503
Query: 176 DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
ED D+D + G + +Q + Q+ L AK+ ++ + +
Sbjct: 504 ---GLEDHDGDMDFKVAGSKDG-VTALQMDIKLGGIDQEILKQALYQAKEGRIHILNIME 559
Query: 236 DVISN 240
+
Sbjct: 560 EAAKE 564
Score = 84.1 bits (206), Expect = 2e-14, Method: Composition-based stats.
Identities = 40/250 (16%), Positives = 75/250 (30%), Gaps = 48/250 (19%)
Query: 20 VSKYAEGSCLVKFGDTHLLTTATLEE---KVPMWIRNTKHGWITAEYGMLPRSTGNRVKR 76
V+K A G+ L++ G + +L T EE + ++ G +P R
Sbjct: 19 VAKQAAGAVLMRQGKSVVLATVAREEKQVEEDFLPLTVQYIEKAYAAGKIPGGYVKR--- 75
Query: 77 EAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVA 136
+ R+I R+LR + QI++ + + A VA
Sbjct: 76 ---ETKPSDAETLTARIIDRSLRPLFPKGYAYPTQIVVMVLSADPKVDLQVMGLNAASVA 132
Query: 137 LHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDS 196
L+ +K V + G + G I++ + E +D
Sbjct: 133 LY-------------LSDIPMKAPVCGVRIGKIDGNFILNPNNEELQNSTLDLYVAGVKD 179
Query: 197 GHIVEVQGSA-------------------------ERATFSQDHFFAMLNLAKDRIADLI 231
++ ++ A S+D LNLA+ I +
Sbjct: 180 -ELLMIEMRALPDQKENEIFIEAPYADVLTQTTSQNMNELSEDEILEALNLAQKAILNGS 238
Query: 232 KLQKDVISNE 241
++ S
Sbjct: 239 NAYEEAFSKH 248
>gi|170747372|ref|YP_001753632.1| polynucleotide phosphorylase/polyadenylase [Methylobacterium
radiotolerans JCM 2831]
gi|226702663|sp|B1LZQ1|PNP_METRJ RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|170653894|gb|ACB22949.1| Polyribonucleotide nucleotidyltransferase [Methylobacterium
radiotolerans JCM 2831]
Length = 739
Score = 153 bits (387), Expect = 1e-35, Method: Composition-based stats.
Identities = 51/241 (21%), Positives = 91/241 (37%), Gaps = 18/241 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +R I V A GS L G+T L ATL +E+ + T
Sbjct: 316 RIDGRDVKTVRSILSEVGVLPRAHGSALFTRGETQALVVATLGTGEDEQFIDALEGTYKE 375
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + + R+ G + RA+R V+ + I + +
Sbjct: 376 RFLLHYNFPPYSVGETGRMGSPGRREIGHGKL----AWRAIRPVLPPAHEFPYTIRVVSE 431
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ G ++L D + + +L+G A+ +
Sbjct: 432 ITESNGSSSMASVCGGSLSLMDAGVPLRRPVAGIAMGLILEGERFAVLSD---------I 482
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D TD G + +Q + A +++ L AKD A ++
Sbjct: 483 LGDEDHLGDMDFKVAGTDEG-VTSLQMDIKIAGITEEIMKIALAQAKDGRAHILAEMAKA 541
Query: 238 I 238
+
Sbjct: 542 L 542
Score = 101 bits (250), Expect = 1e-19, Method: Composition-based stats.
Identities = 33/228 (14%), Positives = 69/228 (30%), Gaps = 26/228 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----HGWITAEYGML 66
R++ L V++ A+G+ + +G+T +L T ++ I + G +
Sbjct: 14 RKLVLETGKVARQADGAVIATYGETSVLATVVAAKEPKPGIDFMPLTVNYQERAYAAGRI 73
Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
P R GR + + R+I R +R + Q+++ +
Sbjct: 74 PGGYFKR------EGRPSEKETLVSRLIDRPIRPLFIEGWRNDTQVVVTVLTHDLENDPD 127
Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
A+ A A G + G + G ++ E
Sbjct: 128 IVAMVAASAA-------------LTLSGVPFMGPIGGARVGYINGGYRLNPLVTETKEES 174
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
V ++ V+ A+ S+D + +I+
Sbjct: 175 SLDLVVAGTQDAVLMVESEAKE--LSEDVMLGAVMFGHKHFQPVIEAI 220
>gi|149375751|ref|ZP_01893519.1| Polyribonucleotide nucleotidyltransferase (polynucleotide
phosphorylase) [Marinobacter algicola DG893]
gi|149359876|gb|EDM48332.1| Polyribonucleotide nucleotidyltransferase (polynucleotide
phosphorylase) [Marinobacter algicola DG893]
Length = 714
Score = 153 bits (387), Expect = 1e-35, Method: Composition-based stats.
Identities = 45/242 (18%), Positives = 85/242 (35%), Gaps = 18/242 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +R I + V GS L G+T + T TL + ++ + +
Sbjct: 325 RIDGRDNKTVRPIEVEVGVLPSTHGSALFTRGETQAIVTTTLGTARDMQIIDALEGERKD 384
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + R+ G + R + +V+ I +
Sbjct: 385 PFLFHYNFPPYSVGEAGRVGTPGRREVGHGRL----AKRGVAAVMPTMEEFPYTIRAVSE 440
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ G+ +AL D ++ + V +G A+ +
Sbjct: 441 ITESNGSSSMASVCGSSLALMDAGVPIKAPVAGIAMGLVKEGDQFAVLTD---------I 491
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T G I +Q + + + L+ A ++ V
Sbjct: 492 LGDEDHLGDMDFKVAGTSDG-ITALQMDIKIQGITDEIMEIALDQANAARLHILGEMAKV 550
Query: 238 IS 239
IS
Sbjct: 551 IS 552
Score = 96.1 bits (237), Expect = 4e-18, Method: Composition-based stats.
Identities = 31/229 (13%), Positives = 68/229 (29%), Gaps = 28/229 (12%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKV----PMWIRNTKHGWITAEYGMLPR 68
+++ +++ A GS LV D +L T ++ P + + T G +P
Sbjct: 24 VTIETGRIARQATGSVLVTVDDISVLGTVVAAKEAKPGQPFFPLTVNYFEKTYAVGKIPG 83
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
R GR + R+I R +R + + Q+I +
Sbjct: 84 GFFKR------EGRPSEKETLTSRLIDRPIRPLFPKGFMNETQVITTVMSSSKNQDPDI- 136
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY-PIVDLDYGEDSTIDV 187
+ + G + A ++ + E T +
Sbjct: 137 ------------AAMLAASAALSISGIPFDGPIGASRVAYTNERGYFLNPTFEELETSLL 184
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
D T+ ++ V+ A+ ++D + + + K+
Sbjct: 185 DMVVAGTED-AVLMVESEAKG--LTEDQMLGAVLFGHQEMQTAVTAIKE 230
>gi|86150580|ref|ZP_01068803.1| polyribonucleotide nucleotidyltransferase [Campylobacter jejuni
subsp. jejuni CF93-6]
gi|88596155|ref|ZP_01099392.1| polyribonucleotide nucleotidyltransferase [Campylobacter jejuni
subsp. jejuni 84-25]
gi|218562865|ref|YP_002344644.1| polynucleotide phosphorylase/polyadenylase [Campylobacter jejuni
subsp. jejuni NCTC 11168]
gi|123042773|sp|Q0P903|PNP_CAMJE RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|85838931|gb|EAQ56197.1| polyribonucleotide nucleotidyltransferase [Campylobacter jejuni
subsp. jejuni CF93-6]
gi|88190996|gb|EAQ94968.1| polyribonucleotide nucleotidyltransferase [Campylobacter jejuni
subsp. jejuni 84-25]
gi|112360571|emb|CAL35368.1| polyribonucleotide nucleotidyltransferase [Campylobacter jejuni
subsp. jejuni NCTC 11168]
gi|284926478|gb|ADC28830.1| polynucleotide phosphorylase/polyadenylase [Campylobacter jejuni
subsp. jejuni IA3902]
gi|315927122|gb|EFV06473.1| S1 RNA binding domain protein [Campylobacter jejuni subsp. jejuni
DFVF1099]
gi|315929391|gb|EFV08594.1| S1 RNA binding domain protein [Campylobacter jejuni subsp. jejuni
305]
Length = 719
Score = 153 bits (387), Expect = 1e-35, Method: Composition-based stats.
Identities = 46/245 (18%), Positives = 84/245 (34%), Gaps = 22/245 (8%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWI------RNTK 55
R GR N++R IS+ + A GSCL G T L ATL + + +N
Sbjct: 336 RADGRSLNEVRPISIETNILPNAHGSCLFTRGQTQALVVATLGGENDSQMIDLLTEKNPI 395
Query: 56 HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115
Y S G +A R+ G RAL V I +
Sbjct: 396 SERFMVNYNFPGFSVGEASPIKAPGRRELGHGNL----AKRALYPSV--DENYPYVIRLV 449
Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIV 175
++++++G + A + G +AL + + + + A+ ++
Sbjct: 450 SEILESNGSSSMATVCGGSLALKAAGVPSLKLVAGVAMGLIFEDNKYAVLTDIM------ 503
Query: 176 DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
ED D+D + G + +Q + Q+ L AK+ ++ + +
Sbjct: 504 ---GLEDHDGDMDFKVAGSKDG-VTALQMDIKLGGIDQEILKQALYQAKEGRIHILNIME 559
Query: 236 DVISN 240
+
Sbjct: 560 EAAKE 564
Score = 84.1 bits (206), Expect = 2e-14, Method: Composition-based stats.
Identities = 40/250 (16%), Positives = 76/250 (30%), Gaps = 48/250 (19%)
Query: 20 VSKYAEGSCLVKFGDTHLLTTATLEE---KVPMWIRNTKHGWITAEYGMLPRSTGNRVKR 76
V+K A G+ L++ G + +L T EE + ++ G +P R
Sbjct: 19 VAKQAAGAVLMRQGKSVVLATVAREEKQVEEDFLPLTVQYIEKAYAAGKIPGGYVKR--- 75
Query: 77 EAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVA 136
+ R+I R+LR + QI++ + ++ A VA
Sbjct: 76 ---ETKPSDAETLTARIIDRSLRPLFPKGYAYPTQIVVMVLSADPKVDLQVMSLNAASVA 132
Query: 137 LHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDS 196
L+ +K V + G + G I++ + E +D
Sbjct: 133 LY-------------LSDIPMKAPVCGVRIGKIDGNFILNPNNEELQNSTLDLYVAGVKD 179
Query: 197 GHIVEVQGSA-------------------------ERATFSQDHFFAMLNLAKDRIADLI 231
++ ++ A S+D LNLA+ I +
Sbjct: 180 -ELLMIEMRALPDQKENEIFIEAPYADVLTQTTSQNMNELSEDEILEALNLAQKAILNGS 238
Query: 232 KLQKDVISNE 241
++ S
Sbjct: 239 NAYEEAFSKH 248
>gi|150390429|ref|YP_001320478.1| polynucleotide phosphorylase/polyadenylase [Alkaliphilus
metalliredigens QYMF]
gi|187470927|sp|A6TRK1|PNP4_ALKMQ RecName: Full=Polyribonucleotide nucleotidyltransferase 4; AltName:
Full=Polynucleotide phosphorylase 4; Short=PNPase 4
gi|149950291|gb|ABR48819.1| Polyribonucleotide nucleotidyltransferase [Alkaliphilus
metalliredigens QYMF]
Length = 704
Score = 153 bits (387), Expect = 1e-35, Method: Composition-based stats.
Identities = 49/242 (20%), Positives = 86/242 (35%), Gaps = 18/242 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56
+R R +++R I+ + G+ L G T +LT AT E ++ + +
Sbjct: 311 VRPDERALDEIRPITSEVGILPRTHGTGLFTRGQTQVLTVATLGALGEVQILDGLGEEES 370
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P S G R+ G RAL +V I +
Sbjct: 371 KRYMHHYNFPPYSVGEAKFLRGPGRREIGHGAL----AERALLPMVPSQDDFPYAIRLVS 426
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V+ ++G + A++ G+ +AL D ++D + V + AI
Sbjct: 427 EVLSSNGSSSQASVCGSTLALLDAGVPIKDMVAGIAMGLVKENDKIAILSD--------- 477
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED+ D+D TD G I +Q + +D L A+ ++ K
Sbjct: 478 IQGMEDALGDMDFKVAGTDKG-ITAIQMDIKIKGIHKDILKDALEQARVGRLHILDKMKK 536
Query: 237 VI 238
I
Sbjct: 537 AI 538
Score = 116 bits (289), Expect = 4e-24, Method: Composition-based stats.
Identities = 38/232 (16%), Positives = 85/232 (36%), Gaps = 27/232 (11%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKHGWITAEYGMLPR 68
+ + ++ A GSC+V++GDT +L AT E + + + + G +P
Sbjct: 14 LHVEIGKYAEQASGSCMVRYGDTTVLVNATASKSPREGIDFFPLSVDYEEKLYAVGKIPG 73
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
R R ++ R+I R +R + Q+I + D
Sbjct: 74 GFIKR------EARPSEKAVLTSRLIDRPIRPLFPKGYRNEVQVIATVMSVDKDYAPDIV 127
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+ G+ +A G +++ G++ G +++ + + D+D
Sbjct: 128 AMIGSSIA-------------LSISDIPFGGPTGSVNVGLVNGEFVLNPTSDQRAISDID 174
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
T I+ ++ A ++D L A + I ++ +++++
Sbjct: 175 LVVSGTKD-AIMMIESGANE--VTEDQMLDALMFAHEEIKTIVAFIEEIVAE 223
>gi|85859450|ref|YP_461652.1| ribonuclease PH [Syntrophus aciditrophicus SB]
gi|123516627|sp|Q2LTS3|RNPH_SYNAS RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|85722541|gb|ABC77484.1| ribonuclease PH [Syntrophus aciditrophicus SB]
Length = 240
Score = 153 bits (387), Expect = 1e-35, Method: Composition-based stats.
Identities = 114/242 (47%), Positives = 169/242 (69%), Gaps = 2/242 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR + R E+++RE+ +TR K+ +GS L++ GDT ++ TA LE KVP ++RN+ GW+T
Sbjct: 1 MRKNRRHEDELREVKITRNYLKHPQGSVLIEVGDTKVICTAALEAKVPPFLRNSGKGWLT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEY MLP +T R +RE+V G GGR+ EIQR+IGR+LR+V DL +LG + IDCDVIQ
Sbjct: 61 AEYAMLPMATQERNQRESVRGHIGGRTHEIQRLIGRSLRAVTDLDSLGENTVYIDCDVIQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+ITG++VAL D + M++ + ++ +V+A+S G++ G ++DL+Y
Sbjct: 121 ADGGTRTASITGSFVALVDLFRKMKEKGICETM--PIRDYVSAVSVGVVDGQLLLDLEYE 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
EDS DVD N VMT +G +EVQG+AER F +D AM+ LA I L ++Q++++
Sbjct: 179 EDSRADVDMNVVMTGAGEFIEVQGTAERVPFGRDRLTAMVELAGRGIRKLTEVQREILGG 238
Query: 241 EV 242
++
Sbjct: 239 QI 240
>gi|42520733|ref|NP_966648.1| polynucleotide phosphorylase/polyadenylase [Wolbachia endosymbiont
of Drosophila melanogaster]
gi|81652354|sp|Q73GN4|PNP_WOLPM RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|42410473|gb|AAS14582.1| polyribonucleotide nucleotidyltransferase [Wolbachia endosymbiont
of Drosophila melanogaster]
Length = 757
Score = 153 bits (387), Expect = 1e-35, Method: Composition-based stats.
Identities = 44/245 (17%), Positives = 88/245 (35%), Gaps = 18/245 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTT----ATLEEKVPMWIRNTKH 56
+R+ GR+ +++R+I + + GS L G+T L T +E++ I +
Sbjct: 310 VRIDGRKHDEIRQIEVEVDILSKTHGSALFTRGNTQALVVTALGTTQDEQIVDDIEGDRR 369
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y + G A R+ G + +A+ V+ + I +
Sbjct: 370 EHFMLHYNFPSFAVGETSAARAPGRREIGHGKL----AWKAIHPVLPDKSEFPYTIRVVS 425
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+++++DG + A + G +AL D ++ + + I
Sbjct: 426 EILESDGSSSMATVCGTSLALMDTGVPIKAPVAGIAMGLIKDKDEYVILSD--------- 476
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T G + +Q + + S + L AK +++
Sbjct: 477 ILGDEDYLGDMDFKVAGTSEG-VTALQMDMKISGISFEIVEKSLEQAKAGRLHILEKMNA 535
Query: 237 VISNE 241
VIS
Sbjct: 536 VISEH 540
Score = 103 bits (257), Expect = 2e-20, Method: Composition-based stats.
Identities = 45/229 (19%), Positives = 80/229 (34%), Gaps = 25/229 (10%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTAT---LEEKVPMWIRNTKHGWITAEYGMLP 67
R +SL +++ A GS +V +GDT +L T EE V N + + G +P
Sbjct: 14 RALSLETGKIARQAHGSVVVNYGDTSVLVTVVRKKKEESVDFLPLNVQFIAKSYAMGKIP 73
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R G+ R I R+I R++R + ++ +
Sbjct: 74 GGFFKR------EGKPSDRETLISRVIDRSIRPLFPEGFHDEISVVCNLLTYDTVNPPEV 127
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
A+ GA AL + I++ E +
Sbjct: 128 PALIGAVAALAISGVPFHFTIAGV------------MVGCDENNNYILNPSVQEMKASSL 175
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
D F+ D I+ V+ +E S+++ F + + + +IKL K+
Sbjct: 176 DL-FLSGDENSILMVE--SEVKELSEENVFNAIKFGHEHLKPVIKLIKE 221
>gi|163853425|ref|YP_001641468.1| polynucleotide phosphorylase/polyadenylase [Methylobacterium
extorquens PA1]
gi|163665030|gb|ABY32397.1| Polyribonucleotide nucleotidyltransferase [Methylobacterium
extorquens PA1]
Length = 752
Score = 153 bits (387), Expect = 1e-35, Method: Composition-based stats.
Identities = 50/241 (20%), Positives = 91/241 (37%), Gaps = 18/241 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +R I V A GS L G+T L ATL +E+ + T
Sbjct: 323 RIDGRDVKTVRSIVSEVGVLPRAHGSSLFTRGETQALVVATLGTGEDEQFIDALEGTYKE 382
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + + R+ G + RA+R V+ + I + +
Sbjct: 383 RFLLHYNFPPYSVGETGRMGSPGRREIGHGKL----AWRAIRPVLPPAHEFPYTIRVVSE 438
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ G ++L D + + +L+G A+ +
Sbjct: 439 ITESNGSSSMASVCGGSLSLMDAGVPLRRPVAGIAMGLILEGERFAVLSD---------I 489
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D ++ G I +Q + A +++ L AKD A ++
Sbjct: 490 LGDEDHLGDMDFKVAGSEEG-ITSLQMDIKIAGITEEIMKIALAQAKDGRAHILGEMSKA 548
Query: 238 I 238
+
Sbjct: 549 L 549
Score = 104 bits (259), Expect = 1e-20, Method: Composition-based stats.
Identities = 36/228 (15%), Positives = 72/228 (31%), Gaps = 27/228 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRN----TKHGWITAEYGML 66
R++ L ++ A+GS + +G+T +L T ++ I + G +
Sbjct: 21 RKLVLETGKTARQADGSVVATYGETTVLATVVAGKEPKAGIDFLPLTVNYQERAYAAGRI 80
Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
P R GR + + R+I R +R + Q+++ +
Sbjct: 81 PGGYFKR------EGRPSEKETLVSRLIDRPIRPLFVEGWRNDTQVVVTVLSHDLENDPD 134
Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
A+ A A G + A G L G ++ E +
Sbjct: 135 IVAMVAASAA-------------LTLSGVPFMGPIGAARVGYLNGGYKLNPLVTEIAEST 181
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
+D T ++ V+ A+ S+D + +I+
Sbjct: 182 LDLVVAGTQD-AVLMVESEAKE--LSEDVMLGAVMFGHKHFQPVIEAI 226
>gi|254503471|ref|ZP_05115622.1| 3' exoribonuclease family, domain 2 [Labrenzia alexandrii DFL-11]
gi|222439542|gb|EEE46221.1| 3' exoribonuclease family, domain 2 [Labrenzia alexandrii DFL-11]
Length = 711
Score = 153 bits (387), Expect = 1e-35, Method: Composition-based stats.
Identities = 44/243 (18%), Positives = 91/243 (37%), Gaps = 18/243 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR + +R+IS + A GS L G+T L ATL +E+ + T
Sbjct: 318 RIDGRDLSTVRQISSEVGILSRAHGSSLFTRGETQGLVVATLGTGEDEQFIDLLEGTVKS 377
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + + R+ G + RA+ ++ + + +
Sbjct: 378 HFMLHYNFPPYSVGETGRMGSPGRREIGHGKL----AWRAINPMLPAHHEFPYTLRVVSE 433
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A + G ++L D ++ + + +G A+ +
Sbjct: 434 ITESNGSSSMATVCGTSLSLMDAGVPLKAPVAGIAMGLIKEGERFAVLSD---------I 484
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D +++G I +Q + +++ L AK ++ +
Sbjct: 485 LGDEDHLGDMDFKVAGSENG-ITALQMDIKIDGITEEIMKVALEQAKGGRIHILGEMANA 543
Query: 238 ISN 240
I+
Sbjct: 544 ITE 546
Score = 109 bits (272), Expect = 4e-22, Method: Composition-based stats.
Identities = 32/228 (14%), Positives = 66/228 (28%), Gaps = 27/228 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEE----KVPMWIRNTKHGWITAEYGML 66
R + L V++ A+GS + +G+T +L T + + + G +
Sbjct: 15 RPLILETGKVARQADGSVMATYGETKVLATVVSAKAPRAGQDFFPLTVNYQEKAFAAGKI 74
Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
P R GR R+I R +R + Q++I +
Sbjct: 75 PGGYFKR------EGRPSEHETLTSRLIDRPIRPLFADGYKNDTQVVITVLSHDMENAPD 128
Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
A+ A A G + G + G +++ +
Sbjct: 129 ILAMVAASAA-------------LTLSGVPFMGPIGGARVGYINGEYVLNPLVDDMPESA 175
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
+D T ++ V+ A+ ++ + +I
Sbjct: 176 LDLVVAGTSD-AVLMVESEAKE--LDEETMLGAVMFGHKGFQTVIDAI 220
>gi|254303468|ref|ZP_04970826.1| polyribonucleotide nucleotidyltransferase [Fusobacterium nucleatum
subsp. polymorphum ATCC 10953]
gi|148323660|gb|EDK88910.1| polyribonucleotide nucleotidyltransferase [Fusobacterium nucleatum
subsp. polymorphum ATCC 10953]
Length = 699
Score = 153 bits (387), Expect = 1e-35, Method: Composition-based stats.
Identities = 46/243 (18%), Positives = 90/243 (37%), Gaps = 18/243 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR ++R + V GS L G+T L TL +E++ + +
Sbjct: 324 RVDGRTTTEIRPLDAQINVLPIPHGSALFTRGETQSLAITTLGTKEDEQLIDDLEKEYYK 383
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + + R+ G RAL V+ I + +
Sbjct: 384 KFYLHYNFPPYSVGEVGRMGSPGRRELGHGSL----AERALSYVIPSEEEFPYTIRVVSE 439
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A+I G ++L +++ + + +G + ++
Sbjct: 440 ITESNGSSSQASICGGSLSLMSAGVPIKEHVAGIAMGLIKEGEEFTVLTDIM-------- 491
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T SG I +Q + +++ LN A + +++L +
Sbjct: 492 -GLEDHLGDMDFKVAGTKSG-ITALQMDIKITGITEEIMRIALNQAHEARIQILELMNNT 549
Query: 238 ISN 240
IS
Sbjct: 550 ISK 552
Score = 98.8 bits (244), Expect = 5e-19, Method: Composition-based stats.
Identities = 37/230 (16%), Positives = 78/230 (33%), Gaps = 27/230 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGML 66
R + ++ +S+ + G+ ++++GDT LL+TA + + + G
Sbjct: 14 RTLKVSTGKISRQSAGAIVIQYGDTVLLSTANRSKEARKGADFFPLTVDYIEKFYSTGKF 73
Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
P R GR + + R+I R +R + I+
Sbjct: 74 PGGFNKR------EGRPSTNATLVARLIDRPIRPMFPDGFNYDVHIVNTVLSYDEINMPD 127
Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
+ G+ +AL G VA++ G G I++ E +
Sbjct: 128 YLGVIGSSLALM-------------ISDIPFLGPVASVIVGYKNGEFILNPSPKELEESE 174
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+D T + V+ A+ ++ + A + I + + Q++
Sbjct: 175 LDLIVAGTKE-AVNMVEAGAKE--LDEETMLKAIMFAHENIKKICEFQEE 221
>gi|51891481|ref|YP_074172.1| ribonuclease PH (tRNA nucleotidyltransferase) [Symbiobacterium
thermophilum IAM 14863]
gi|61215887|sp|Q67SL5|RNPH_SYMTH RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|51855170|dbj|BAD39328.1| ribonuclease PH (tRNA nucleotidyltransferase) [Symbiobacterium
thermophilum IAM 14863]
Length = 273
Score = 153 bits (387), Expect = 2e-35, Method: Composition-based stats.
Identities = 122/239 (51%), Positives = 165/239 (69%), Gaps = 2/239 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR GR ++MR + +TR + +AEGS L++ G T ++ TATLE++VP ++R GWIT
Sbjct: 1 MRQDGRLPHEMRPVRITRHYNIHAEGSVLIEVGRTRVICTATLEDRVPPFLRGRGEGWIT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPR+TG R REA GRQGGR+ EIQR+IGRALRSV+DL+ALG R +IIDCDVIQ
Sbjct: 61 AEYGMLPRATGQRTAREAARGRQGGRTMEIQRLIGRALRSVIDLAALGERTLIIDCDVIQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+ITGA+VA+ D L + +K ++AA S G++ G P++DL Y
Sbjct: 121 ADGGTRTASITGAYVAMVDALAGLRAA--GLIDRLPVKDYLAATSVGVVGGVPVLDLTYE 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
EDS VD N VMT SG +VE+QG+ E F++ +L LA+ + L+ LQ++ +
Sbjct: 179 EDSRAAVDLNLVMTGSGEVVEIQGTGEERPFTRRELEELLALAESGVRRLVALQREQLG 237
>gi|94309868|ref|YP_583078.1| polynucleotide phosphorylase/polyadenylase [Cupriavidus
metallidurans CH34]
gi|187611276|sp|Q1LPW7|PNP_RALME RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|93353720|gb|ABF07809.1| polynucleotide phosphorylase/polyadenylase [Cupriavidus
metallidurans CH34]
Length = 725
Score = 153 bits (387), Expect = 2e-35, Method: Composition-based stats.
Identities = 49/242 (20%), Positives = 95/242 (39%), Gaps = 18/242 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +R I + V A GS L G+T L ATL +E++ +
Sbjct: 317 RIDGRDTRTVRPIEIRSSVLPRAHGSALFTRGETQALVVATLGTKSDEQIIDALAGEYRD 376
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y M P +TG + + R+ G + RAL V+ + I + +
Sbjct: 377 RFMLHYNMPPFATGETGRVGSPKRREIGHGRL----AKRALIPVLPKDDEFAYTIRLVSE 432
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ G +AL D ++ + +L+G+ A+ +
Sbjct: 433 ITESNGSSSMASVCGGCLALMDAGVPVKAHVAGVAMGLILEGNKFAVLTD---------I 483
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D TD+G I +Q + +++ L A++ ++ +
Sbjct: 484 LGDEDHLGDMDFKVAGTDAG-ITALQMDIKVQGITKEIMQVALAQAREGRMHILGAMQGA 542
Query: 238 IS 239
+
Sbjct: 543 MG 544
Score = 86.1 bits (211), Expect = 4e-15, Method: Composition-based stats.
Identities = 36/232 (15%), Positives = 72/232 (31%), Gaps = 31/232 (13%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT----KHGWITAEYGMLPR 68
+ + +++ A G+ +V DT +L T + + T G +P
Sbjct: 18 VRMETGEIARQASGAVIVDVEDTVVLATVVAAKSPKAGQDFFPLTVDYIEKTYAAGKIPG 77
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
R GR R+I R LR + Q++I I +
Sbjct: 78 GFFKR------EGRPSENETLTSRLIDRPLRPLFPEGFYNDVQVVIHVLSINPEIPADIP 131
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+ + + G V A G G +++ + + D+D
Sbjct: 132 ALIAS-------------SAALAVSGIPFNGPVGAARVGYKDGQYLLNPTRAQIAASDLD 178
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKD----RIADLIKLQKD 236
T+ ++ V+ A + S+D + + I + L ++
Sbjct: 179 LVVAGTER-AVLMVESEAHQ--LSEDVMLGAVVYGHEQMQIAINAIHDLVRE 227
>gi|154249089|ref|YP_001409914.1| polynucleotide phosphorylase/polyadenylase [Fervidobacterium
nodosum Rt17-B1]
gi|187610262|sp|A7HK24|PNP_FERNB RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|154153025|gb|ABS60257.1| Polyribonucleotide nucleotidyltransferase [Fervidobacterium nodosum
Rt17-B1]
Length = 693
Score = 153 bits (387), Expect = 2e-35, Method: Composition-based stats.
Identities = 49/244 (20%), Positives = 88/244 (36%), Gaps = 18/244 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
+R GR +R I+ + GS L G+T L TL EE++ +
Sbjct: 318 LRADGRGPKDIRPITCEVGLLPRTHGSSLFTRGETQSLGIVTLGSPAEEQIIDTLIEEGT 377
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P STG S R+ G RA+++++ I +
Sbjct: 378 KRFILHYNFPPFSTGEVKPLRGPSRREIGHGHL----AERAVKAIIPPEDEFPYVIRVVS 433
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
++++++G + A + A +AL D + + +L+ G + D
Sbjct: 434 EILESNGSSSMATVCSASLALMDAGVPTKKHVAGVAMGLILE---------EGKGVILTD 484
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T G I Q + + S++ L AK+ ++ +
Sbjct: 485 IIGLEDHWGDMDFKVAGTKDG-ITAFQMDCKVSGVSEELLRQALYQAKEARMFILDKLYE 543
Query: 237 VISN 240
IS
Sbjct: 544 TISE 547
Score = 105 bits (261), Expect = 6e-21, Method: Composition-based stats.
Identities = 46/225 (20%), Positives = 79/225 (35%), Gaps = 26/225 (11%)
Query: 20 VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----HGWITAEYGMLPRSTGNRVK 75
V+K + GS +FGD+ +L T + + V I G +P R
Sbjct: 20 VAKQSAGSIWARFGDSVVLATVNVSDNVVEGIDFVPLTVEFMEKFYAAGKIPGGFVKR-- 77
Query: 76 REAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWV 135
G+ R+I R +R + + Q+I+ + + T IT A +
Sbjct: 78 ----EGKPSESGILSSRLIDRPIRPLFPKNLRNEVQVIVTVLSVDPNCPTDVLGITAASL 133
Query: 136 ALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTD 195
AL+ G VA + G + G IV + +D T
Sbjct: 134 ALN-------------ISRVPFDGIVAGVQIGYVDGQFIVFPTAEQLERSKIDIVVAGTK 180
Query: 196 SGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
I V+G A+ +++ L A + I ++ Q++VI
Sbjct: 181 D-AITMVEGEAKE--VTEEEMLQALMTAHEAIKQIVAFQEEVIKE 222
>gi|239994336|ref|ZP_04714860.1| polynucleotide phosphorylase/polyadenylase [Alteromonas macleodii
ATCC 27126]
Length = 724
Score = 153 bits (387), Expect = 2e-35, Method: Composition-based stats.
Identities = 39/240 (16%), Positives = 84/240 (35%), Gaps = 10/240 (4%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R+ GR +R + + + GS L G+T L ATL + + + G +
Sbjct: 335 RIDGRDPAMIRALDVATGILPRTHGSALFTRGETQALVAATLGTERDAQMIDELQGKRDS 394
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
+ + V + G R R+ R +++V+ + + ++ ++
Sbjct: 395 RFMLHYNFPPYCVGETGMIGSPKRREIGHGRLAKRGIQAVMPSEEEFPYVVRVVSEITES 454
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
+G + A++ G +AL D ++ + V + + E
Sbjct: 455 NGSSSMASVCGTSLALMDAGVPIKASVAGIAMGLVKSDDNFVVLSD---------ILGDE 505
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
D D+D T G I +Q + +++ L AK+ ++ + + I
Sbjct: 506 DHLGDMDFKVAGTTEG-ITALQMDIKIEGITKEIMQIALKQAKEARLHILNVMDEAIGGH 564
Score = 96.1 bits (237), Expect = 4e-18, Method: Composition-based stats.
Identities = 36/228 (15%), Positives = 75/228 (32%), Gaps = 27/228 (11%)
Query: 14 ISLTRRV-SKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----HGWITAEYGMLPR 68
++L V ++ A + L DT +L T +++ + G +P
Sbjct: 36 VTLETGVIARQATAAVLASMDDTSVLVTVVGKKEAKADQDFFPLTVNYQEKAYAAGKIPG 95
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
R GR I R+I R +R + Q+++ D T
Sbjct: 96 GFFKR------EGRPSEGETLIARLIDRPIRPLFPEGFKNEVQVVVTVMSANPDIPTDII 149
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
++ G A G + A G G I++ E + ++D
Sbjct: 150 SMIGTSAA-------------LAISGIPFNGPIGAARVGFSNGEYILNTRAEEQAESELD 196
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
T+ G ++ V+ +E + S+D + +++ ++ +
Sbjct: 197 LVVAGTE-GAVLMVE--SEASVLSEDTMLGAVMFGHEQMQTVVNAVNE 241
>gi|294788877|ref|ZP_06754118.1| polyribonucleotide nucleotidyltransferase [Simonsiella muelleri
ATCC 29453]
gi|294483359|gb|EFG31045.1| polyribonucleotide nucleotidyltransferase [Simonsiella muelleri
ATCC 29453]
Length = 703
Score = 153 bits (387), Expect = 2e-35, Method: Composition-based stats.
Identities = 44/242 (18%), Positives = 91/242 (37%), Gaps = 18/242 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +R I++ V GS L G+T L ATL +E++ +
Sbjct: 316 RIDGRDTRTVRPINIQTNVLPRTHGSALFTRGETQALAVATLGTSRDEQIIDALSGEYTD 375
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P STG + A R+ G + RAL +V+ + + + +
Sbjct: 376 RFMLHYNFPPYSTGEVGRVGAPKRREIGHGRL----AKRALVAVLPKPEDFNYTMRVVSE 431
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ G ++L ++ + +L+ + A+ +
Sbjct: 432 ITESNGSSSMASVCGGCLSLLSAGVPLKAHVAGVAMGLILEDNKFAVLTD---------I 482
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T G + +Q + +++ L AK+ ++ +
Sbjct: 483 LGDEDHLGDMDFKVAGTTEG-VTALQMDIKIQGITKEIMQIALAQAKEARLHILTQMQAA 541
Query: 238 IS 239
+
Sbjct: 542 VE 543
Score = 94.9 bits (234), Expect = 9e-18, Method: Composition-based stats.
Identities = 34/228 (14%), Positives = 73/228 (32%), Gaps = 27/228 (11%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGMLPR 68
++L +++ A + V GDT +L T ++E + + T G +P
Sbjct: 16 VTLETGEIARQAAAAVKVSMGDTVVLVAVTTNKDVKEGQDFFPLTVDYFERTYAAGKIPG 75
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
R +Q + R+I R +R + QI+ + +
Sbjct: 76 GFFKR------ESKQSEKEILTSRLIDRPIRPLFPEGFYHDIQIVAMVISCDPEIDSDIP 129
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+ GA A G + A G + +++ + +D
Sbjct: 130 AMIGASAA-------------LVLSGVPFAGPIGAARVGYINDTYVLNPTKHQMHRSQLD 176
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
T+S ++ V+ A +D + +++ +I +
Sbjct: 177 LVVAGTES-AVLMVESEANI--LPEDVMLGAVVYGHEQMQTVIAAINE 221
>gi|302392342|ref|YP_003828162.1| polyribonucleotide nucleotidyltransferase [Acetohalobium arabaticum
DSM 5501]
gi|302204419|gb|ADL13097.1| polyribonucleotide nucleotidyltransferase [Acetohalobium arabaticum
DSM 5501]
Length = 708
Score = 153 bits (387), Expect = 2e-35, Method: Composition-based stats.
Identities = 48/243 (19%), Positives = 87/243 (35%), Gaps = 18/243 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHG 57
R+ GR +++R I V A GS + G T ++T AT +E+ I +
Sbjct: 318 RVDGRDLDEVRPIWCEVDVLPRAHGSGIFTRGQTQVMTVATLGAVGDEQRLDGIEVKESK 377
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y S G R+ G RALR ++ I + +
Sbjct: 378 RYMHHYNFPSFSVGETGPIRGPGRREIGHGALG----ERALRPMIPEHDDFPYTIRLVSE 433
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
V++++G T A+I G+ ++L D + + + KG + +
Sbjct: 434 VLESNGSTSQASICGSTLSLMDAGVPIRKPVAGIAMGLMKKGDKVEVLSD---------I 484
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D ++ G I +Q + S+D L A+ ++ +V
Sbjct: 485 QGIEDFNGDMDFKVAGSEDG-ITALQMDVKIKGISKDILAEALEQARQGRLHILDKMLEV 543
Query: 238 ISN 240
+
Sbjct: 544 MPE 546
Score = 114 bits (286), Expect = 9e-24, Method: Composition-based stats.
Identities = 46/232 (19%), Positives = 93/232 (40%), Gaps = 25/232 (10%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEE--KVPMWIRNTKHGWITAEYGMLPR 68
RE++L +++ A GS LV++G+T +L TAT+++ + + + G +P
Sbjct: 13 RELTLETGKLAQQANGSVLVRYGETVILVTATMDDPRGMDYFPLMINYEERLYSVGKIPG 72
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
R GR + R+I R LR + Q+I + D A
Sbjct: 73 GFIKR------EGRPSEAATLTSRLIDRPLRPLFPEGMRHDVQVIATVLSVDNDNSPEVA 126
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+ GA A +G + ++ G++ G I++ E +D
Sbjct: 127 AMIGASAA-------------LSISDIPFEGPIGGVNVGLVDGELILNPTVEEQEESSLD 173
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
G ++ V+ +A ++D ++ ++ +IKLQ+++++
Sbjct: 174 LIVAGNKDG-VMMVESAANE--VTEDKMIEAIDYGHQKLQGIIKLQEEMVAK 222
>gi|315223620|ref|ZP_07865474.1| polyribonucleotide nucleotidyltransferase [Capnocytophaga ochracea
F0287]
gi|314946401|gb|EFS98396.1| polyribonucleotide nucleotidyltransferase [Capnocytophaga ochracea
F0287]
Length = 735
Score = 153 bits (387), Expect = 2e-35, Method: Composition-based stats.
Identities = 52/244 (21%), Positives = 83/244 (34%), Gaps = 20/244 (8%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
+RL GR Q+R I A GS + G+T LTT TL E V
Sbjct: 318 IRLDGRNTTQIRPIWCEVGYLPSAHGSSIFTRGETQSLTTVTLGTSREANVIDLPSEQGE 377
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P STG S R+ G QR + R + + +
Sbjct: 378 ERFYLHYNFPPFSTGEARPLRGTSRREIGHGNLAQRALKRMIP------EDCPYTVRVVS 431
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
++++++G + A + +AL D M + + + G A+
Sbjct: 432 EILESNGSSSMATVCAGTLALMDAGVQMVKPVSGIAMGLITDGERYAVLSD--------- 482
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T G I Q + S + LN A++ ++ D
Sbjct: 483 ILGDEDHLGDMDFKVTGTADG-ITACQMDIKIKGLSYEILEKALNQAREGRMHILGKITD 541
Query: 237 VISN 240
I+
Sbjct: 542 TIAK 545
Score = 105 bits (262), Expect = 4e-21, Method: Composition-based stats.
Identities = 38/240 (15%), Positives = 75/240 (31%), Gaps = 28/240 (11%)
Query: 8 ENQMREISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRN----TKHGWITAE 62
R I++ ++K A+G+ +V+ G+ LL T +++ + A
Sbjct: 12 LGDGRTITIETGKLAKQADGAVVVQMGNAMLLATVVSAKEINPETDFLPLTVDYREKFAA 71
Query: 63 YGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQAD 122
G P R R + R++ R LR + Q
Sbjct: 72 AGRFPGGFFKR------ETRPSDQEILTMRLVDRVLRPLFPKDYHAETQ----------- 114
Query: 123 GGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGED 182
I+ + D L + + G ++ + G + G IV+ +
Sbjct: 115 --VMIQLISHDENVMPDALAGLAASACLAVSDIPFDGPISEVRVGRVNGKFIVNPSREQL 172
Query: 183 STIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNEV 242
D+D + V+ E S+ + A + I I+ Q ++ +V
Sbjct: 173 EASDIDIMV-GASKDFVAMVE--GEMDEVSEKDMAEAIKFAHEAIKPHIEAQLR-LAEKV 228
>gi|257453578|ref|ZP_05618868.1| polyribonucleotide nucleotidyltransferase [Enhydrobacter aerosaccus
SK60]
gi|257449036|gb|EEV23989.1| polyribonucleotide nucleotidyltransferase [Enhydrobacter aerosaccus
SK60]
Length = 713
Score = 153 bits (387), Expect = 2e-35, Method: Composition-based stats.
Identities = 48/242 (19%), Positives = 90/242 (37%), Gaps = 18/242 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +R + + V Y GS L G+T L T TL + + + TK
Sbjct: 318 RIDGRDLQTVRALDIQVGVLPYTHGSALFTRGETQALVTTTLGNSRDVNMIDTLAGTKQD 377
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y S G + R+ G + R +++++ S I I D
Sbjct: 378 HFMLHYNFPSYSVGETGRDSGPKRREIGHGRL----ARRGVQAMLPDSDRFPYVIRIVSD 433
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ GA +AL D ++ + V +G A+ +
Sbjct: 434 ITESNGSSSMASVCGASLALMDAGVPLKAPVAGIAMGLVKEGERFAVLSD---------I 484
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D + +G + +Q + + + L+ A ++ +V
Sbjct: 485 LGDEDHLGDMDFKVAGSANG-VTALQMDIKIEGITPEIMEKALHQAHAGRIHILNAMNEV 543
Query: 238 IS 239
IS
Sbjct: 544 IS 545
Score = 75.7 bits (184), Expect = 5e-12, Method: Composition-based stats.
Identities = 33/236 (13%), Positives = 65/236 (27%), Gaps = 44/236 (18%)
Query: 14 ISLTRR-VSKYAEGSCLVKFG------------DTHLLTTATLEEKVPMWIRNTKHGWIT 60
++L +++ A S +V G + + +
Sbjct: 16 VTLETGRIARQAN-SVVVHMGGVSVLVAVVVKDEAQA--------GQNFFPLTVNYQEKM 66
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
G +P G R GR R+I R +R + S Q+
Sbjct: 67 YAAGKIPGGYGKR------EGRPSEMETLTSRLIDRPIRPLFPESYFNEIQVTATVISSD 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
AA+ G A S G + A G + +++ ++
Sbjct: 121 KKQDADIAAMIGTSAA-------------LAISSAPFNGPIGAARVGFINDEYVLNPNHE 167
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+D T S ++ V+ A+ S+D + + +I +
Sbjct: 168 ALKQSSLDLVVAGTSS-AVLMVESEAKE--LSEDQMLGAVLYGHAQQQVVIDAINE 220
>gi|256820519|ref|YP_003141798.1| polynucleotide phosphorylase/polyadenylase [Capnocytophaga ochracea
DSM 7271]
gi|256582102|gb|ACU93237.1| Polyribonucleotide nucleotidyltransferase [Capnocytophaga ochracea
DSM 7271]
Length = 735
Score = 153 bits (387), Expect = 2e-35, Method: Composition-based stats.
Identities = 52/244 (21%), Positives = 83/244 (34%), Gaps = 20/244 (8%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
+RL GR Q+R I A GS + G+T LTT TL E V
Sbjct: 318 IRLDGRNTTQIRPIWCEVGYLPSAHGSSIFTRGETQSLTTVTLGTSREANVIDLPSEQGE 377
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P STG S R+ G QR + R + + +
Sbjct: 378 ERFYLHYNFPPFSTGEARPLRGTSRREIGHGNLAQRALKRMIP------EDCPYTVRVVS 431
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
++++++G + A + +AL D M + + + G A+
Sbjct: 432 EILESNGSSSMATVCAGTLALMDAGVQMVKPVSGIAMGLITDGERYAVLSD--------- 482
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T G I Q + S + LN A++ ++ D
Sbjct: 483 ILGDEDHLGDMDFKVTGTADG-ITACQMDIKIKGLSYEILEKALNQAREGRMHILGKITD 541
Query: 237 VISN 240
I+
Sbjct: 542 TIAK 545
Score = 106 bits (263), Expect = 4e-21, Method: Composition-based stats.
Identities = 38/240 (15%), Positives = 75/240 (31%), Gaps = 28/240 (11%)
Query: 8 ENQMREISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRN----TKHGWITAE 62
R I++ ++K A+G+ +V+ G+ LL T +++ + A
Sbjct: 12 LGDGRTITIETGKLAKQADGAVVVQMGNAMLLATVVSAKEINPETDFLPLTVDYREKFAA 71
Query: 63 YGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQAD 122
G P R R + R++ R LR + Q
Sbjct: 72 AGRFPGGFFKR------ETRPSDQEILTMRLVDRVLRPLFPKDYHAETQ----------- 114
Query: 123 GGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGED 182
I+ + D L + + G ++ + G + G IV+ +
Sbjct: 115 --VMIQLISHDENVMPDALAGLAASACLAVSDIPFDGPISEVRVGRVNGQFIVNPSREQL 172
Query: 183 STIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNEV 242
D+D + V+ E S+ + A + I I+ Q ++ +V
Sbjct: 173 EASDIDIMV-GASKDFVAMVE--GEMDEVSEKDMAEAIKFAHEAIKPHIEAQLR-LAEKV 228
>gi|254418578|ref|ZP_05032302.1| 3' exoribonuclease family, domain 2 [Brevundimonas sp. BAL3]
gi|196184755|gb|EDX79731.1| 3' exoribonuclease family, domain 2 [Brevundimonas sp. BAL3]
Length = 745
Score = 153 bits (387), Expect = 2e-35, Method: Composition-based stats.
Identities = 46/240 (19%), Positives = 87/240 (36%), Gaps = 17/240 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +++R I V GS L G+T L ATL +E+ ++ T
Sbjct: 317 RVDGRALDKVRAIVSEVGVLPRTHGSALFTRGETQALVVATLGTGEDEQYIDSLQGTYKE 376
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + + R+ G + RA+R ++ I + +
Sbjct: 377 SFLLHYNFPPYSVGEAGRMGSPGRREIGHGKL----AWRAIRPMLPSKEDFPYTIRLVSE 432
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A + G+ +AL D + + + +L+ + D+
Sbjct: 433 ITESNGSSSMATVCGSSLALMDAGVPLIRPVSGIAMGLILEPS--------GEFAILSDI 484
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T G I +Q + A +++ L A ++
Sbjct: 485 LGDEDHLGDMDFKVAGTSEG-ITSLQMDIKVAGITKEIMKQALTQASAGRLHILDEMSKA 543
Score = 121 bits (303), Expect = 8e-26, Method: Composition-based stats.
Identities = 37/235 (15%), Positives = 77/235 (32%), Gaps = 28/235 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----HGWITAEYGML 66
R ++L +++ A+G+ L +G+T +L T + + T G +
Sbjct: 14 RPLTLETGRIARQADGAVLATYGETVVLATVVYGRSPKPGLDFFPLTVNYQEKTFAAGKI 73
Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
P R GR + + R+I R +R + Q++I +
Sbjct: 74 PGGYFKR------EGRPSEKETLVSRLIDRPIRPLFVKGFKNETQVVITVLQHDMENDPD 127
Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
+ A A G + A G++ G +++ + D
Sbjct: 128 VLGMVAASAA-------------LTISGVPFMGPIGAARVGLIDGELVLNPTVDQIPGSD 174
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
+D T ++ V+ A+ S++ L A + +I D ++
Sbjct: 175 LDLVVAGTQD-ALMMVESEAKE--LSEEKMLEALMFAHAGMQPVIDAIID-LAEH 225
>gi|104780032|ref|YP_606530.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas entomophila
L48]
gi|122985959|sp|Q1IF39|PNP_PSEE4 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|95109019|emb|CAK13715.1| polyribonucleotide nucleotidyltransferase (Polynucleotide
phosphorylase) (PNPase) [Pseudomonas entomophila L48]
Length = 701
Score = 153 bits (387), Expect = 2e-35, Method: Composition-based stats.
Identities = 44/243 (18%), Positives = 92/243 (37%), Gaps = 18/243 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +R +++ V GS L G+T L ATL + ++ + K
Sbjct: 316 RIDGRDTKTVRPLNIEVGVLPKTHGSALFTRGETQALVVATLGTARDAQLLDTLEGEKKD 375
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + R+ G + R++++++ + + I + +
Sbjct: 376 PFMLHYNFPPFSVGECGRMGGAGRREIGHGRL----ARRSVQAMLPAADVFPYTIRVVSE 431
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ GA +AL D M+ + V +G A+ +
Sbjct: 432 ITESNGSSSMASVCGASLALMDAGVPMKAPVAGIAMGLVKEGEKFAVLTD---------I 482
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T G + +Q + +++ L A + +++ +
Sbjct: 483 LGDEDHLGDMDFKVAGTAKG-VTALQMDIKINGITEEIMEIALGQALEARLNILGQMNQI 541
Query: 238 ISN 240
I
Sbjct: 542 IGE 544
Score = 99 bits (247), Expect = 3e-19, Method: Composition-based stats.
Identities = 35/234 (14%), Positives = 76/234 (32%), Gaps = 29/234 (12%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTH-LLTTATLEEKVPM----WIRNTKHGWITAEYGMLP 67
++L +++ A G+ LV + +L T ++ + + + T G +P
Sbjct: 15 VTLETGRIARQATGAVLVTVDNDVTVLVTVVGAKQADPGKGFFPLSVHYQEKTYAAGKIP 74
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R GR + R+I R +R + + Q++
Sbjct: 75 GGFFKR------EGRPSEKETLTSRLIDRPIRPLFPEGFMNEVQVVCTVVSTSKKTDPDI 128
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY-PIVDLDYGEDSTID 186
AA+ G A +G + A +++ Y + +
Sbjct: 129 AAMIGTSAA-------------LAISGIPFEGPIGAARVAFHESTGYLLNPTYEQLAASS 175
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
+D T ++ V+ A+ ++D + A D +IK K++ +
Sbjct: 176 LDMVVAGTSD-AVLMVESEAQE--LTEDQMLGAVLFAHDEFQAVIKAVKELAAE 226
>gi|326565074|gb|EGE15267.1| polynucleotide phosphorylase/polyadenylase [Moraxella catarrhalis
46P47B1]
Length = 665
Score = 153 bits (387), Expect = 2e-35, Method: Composition-based stats.
Identities = 43/238 (18%), Positives = 87/238 (36%), Gaps = 10/238 (4%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R+ GR +R + + V Y GS L G+T L TL + + +T G
Sbjct: 317 RIDGRDLETVRALDIQVGVLPYTHGSALFTRGETQALVVTTLGTTRDVNLVDTLAGTKQD 376
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
+ + V G R R+ R +++++ + I + ++ ++
Sbjct: 377 HFMLHYNFPHYSVGETGREGAPKRREIGHGRLARRGVQAMLPAAERFPYTIRVVSEITES 436
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
+G + A++ GA ++L D ++ + V +G A+ + E
Sbjct: 437 NGSSSMASVCGASLSLMDAGVPLKAPVAGIAMGLVKEGERFAVLSD---------ILGDE 487
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
D D+D + +G I +Q + + D L A ++ +VI+
Sbjct: 488 DHLGDMDFKVAGSVNG-ITALQMDIKIEGITADIMEQALKQAHAGRIHILNAMNEVIA 544
Score = 67.2 bits (162), Expect = 2e-09, Method: Composition-based stats.
Identities = 36/224 (16%), Positives = 64/224 (28%), Gaps = 22/224 (9%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGN 72
+ L +++ A S LV G ++ P I +T Y ++G
Sbjct: 16 VVLETGRIARQAN-SVLVHMGG---VSVLVAVVVRPEAIAGQNFFPLTVNYQEKMYASGK 71
Query: 73 RVKREAVSG-RQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAIT 131
R R+I R +R + Q+ AA+
Sbjct: 72 IPGGYGKREGRASEFETLTSRLIDRPIRPLFPEGYFNEIQVTATVISSDKTQDADIAAMI 131
Query: 132 GAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANF 191
GA A G + A G + G +++ E D+D
Sbjct: 132 GASAA-------------LAISPAPFNGPIGAARVGFINGEYVLNPTLAEMKQSDLDLVV 178
Query: 192 VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
T S ++ V+ A+ S+D + + +I
Sbjct: 179 AGTKS-AVLMVESEAKE--LSEDQMLGAVLYGHGQQQVVIDNIN 219
>gi|197336129|ref|YP_002155245.1| polyribonucleotide nucleotidyltransferase [Vibrio fischeri MJ11]
gi|226704830|sp|B5FA83|PNP_VIBFM RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|197317619|gb|ACH67066.1| polyribonucleotide nucleotidyltransferase [Vibrio fischeri MJ11]
Length = 709
Score = 153 bits (386), Expect = 2e-35, Method: Composition-based stats.
Identities = 45/242 (18%), Positives = 93/242 (38%), Gaps = 18/242 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR+++ +R + + V GS L G+T L TATL + ++ + K
Sbjct: 316 RIDGREKDMVRALDVRTGVLPRTHGSSLFTRGETQALVTATLGTQRDAQIIDSLMGEKKD 375
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P G + R+ G + R +++V+ + + +
Sbjct: 376 HFLLHYNFPPYCVGETGFVGSPKRREIGHGKL----AKRGIQAVMPSIEEFPYTVRVVSE 431
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ G +AL D ++ + V +G + +
Sbjct: 432 ITESNGSSSMASVCGTSLALMDAGVPIKASVAGIAMGLVKEGDDFVVLSD---------I 482
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T+ G I +Q + +++ LN A+ ++K+ +
Sbjct: 483 LGDEDHLGDMDFKVAGTNEG-ITALQMDIKIEGITKEIMQIALNQAQGARKHILKVMDEA 541
Query: 238 IS 239
IS
Sbjct: 542 IS 543
Score = 89.1 bits (219), Expect = 5e-16, Method: Composition-based stats.
Identities = 34/228 (14%), Positives = 73/228 (32%), Gaps = 27/228 (11%)
Query: 14 ISLTRRV-SKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----HGWITAEYGMLPR 68
++L V ++ A + + DT + + +++ + T G +P
Sbjct: 17 VTLETGVIARQATAAVMASMDDTSVFVSVVAKKEAVPGQDFFPLTVNYQERTYAAGKIPG 76
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
R GR R+I R +R + + Q+I I +
Sbjct: 77 GFFKR------EGRPSEAETLTARLIDRPIRPLFPDAFKNEVQVIATVVSINPEVNPDMI 130
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
+ G AL G + A G + G +++ E +D
Sbjct: 131 TMIGTSAALAIAGI-------------PFNGPIGAARVGHINGELVLNPSNTELENSKLD 177
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
T+ G ++ V+ +E +++ + + D+ +IK +
Sbjct: 178 LVVSGTE-GAVLMVE--SEADNLTEEEMLSAVVFGHDQQQVVIKAINE 222
>gi|83644105|ref|YP_432540.1| polynucleotide phosphorylase/polyadenylase [Hahella chejuensis KCTC
2396]
gi|123726449|sp|Q2SMK9|PNP_HAHCH RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|83632148|gb|ABC28115.1| Polyribonucleotide nucleotidyltransferase (polynucleotide
phosphorylase) [Hahella chejuensis KCTC 2396]
Length = 703
Score = 153 bits (386), Expect = 2e-35, Method: Composition-based stats.
Identities = 45/243 (18%), Positives = 86/243 (35%), Gaps = 18/243 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVP----MWIRNTKHG 57
R+ GR +R++ + V GS L G+T L TATL + K
Sbjct: 316 RIDGRDTKTVRDLKIEVGVLPNTHGSALFTRGETQALVTATLGTMRDVLMVDALEGEKKD 375
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + V R+ G + R +++++ + +
Sbjct: 376 SFMFHYNFPPYSVGEASRVGGVGRREIGHGRL----ARRGVQALMPNLEEFPYAVRCVSE 431
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ G+ +AL D ++ + V +G A+ +
Sbjct: 432 ITESNGSSSMASVCGSSLALMDAGIPVKAPVAGIAMGLVKEGDSFAVLTD---------I 482
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T+ G + +Q + + + L A ++ V
Sbjct: 483 LGDEDHLGDMDFKVAGTEKG-VTALQMDIKINGITDEIMEIALEQALHARLHILGEMNKV 541
Query: 238 ISN 240
IS
Sbjct: 542 ISE 544
Score = 101 bits (250), Expect = 1e-19, Method: Composition-based stats.
Identities = 36/229 (15%), Positives = 73/229 (31%), Gaps = 28/229 (12%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT----KHGWITAEYGMLPR 68
++L +++ A G+ LV DT +L TA E++ + T G +P
Sbjct: 15 VTLETGRIARQATGAVLVTMDDTVVLVTAVAEKEAVPGRDFFPLSVHYQEKTYAAGRIPG 74
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
R GR + R+I R +R + + QII D
Sbjct: 75 GYFKR------EGRPSEKETLTSRLIDRPIRPLFPDGFMNEVQIICTVMSANKDVDPDI- 127
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY-PIVDLDYGEDSTIDV 187
+ + +G +AA G +++ + +
Sbjct: 128 ------------ASIIGAAAALEISGVPFQGPLAAARVGYTDEDGYLLNPGFKAIENSKL 175
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
D T+ ++ V+ A+ ++D + A + ++ K+
Sbjct: 176 DMVVAGTED-AVLMVESEAKE--LTEDQMLGAVLFAHQEMQVAVQAIKE 221
>gi|315924264|ref|ZP_07920488.1| tRNA nucleotidyltransferase [Pseudoramibacter alactolyticus ATCC
23263]
gi|315622425|gb|EFV02382.1| tRNA nucleotidyltransferase [Pseudoramibacter alactolyticus ATCC
23263]
Length = 247
Score = 153 bits (386), Expect = 2e-35, Method: Composition-based stats.
Identities = 116/238 (48%), Positives = 154/238 (64%), Gaps = 3/238 (1%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R GR N+ R + R +K+A GS L+ GDT ++ TA EE VP ++R GW+TA
Sbjct: 10 RQDGRFYNEGRPTQVMRHFTKHAHGSVLMAVGDTKVICTAMCEETVPGFMRGEGRGWVTA 69
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
EY MLP +T R +R+ + GRS EIQR+IGR+LR+V+D+ LG R I IDCDVIQA
Sbjct: 70 EYSMLPSATETRKRRDRNG-KTDGRSVEIQRLIGRSLRAVMDMETLGERTIRIDCDVIQA 128
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
DGGTRT AITGA++AL DC+ + D ++G VAA S G+ G PI+DL Y E
Sbjct: 129 DGGTRTTAITGAFIALWDCVASLLDS--GMIEKNPIRGFVAATSVGVWQGTPILDLCYLE 186
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
DS +VD N VMTD G I+E+QG+ E F++D F ++ L +D IA LI +QKDV+
Sbjct: 187 DSHAEVDMNLVMTDDGRIIEIQGTGEARPFTRDEFDRLMALGQDGIAHLIAVQKDVLG 244
>gi|88860552|ref|ZP_01135190.1| polynucleotide phosphorylase [Pseudoalteromonas tunicata D2]
gi|88817750|gb|EAR27567.1| polynucleotide phosphorylase [Pseudoalteromonas tunicata D2]
Length = 709
Score = 153 bits (386), Expect = 2e-35, Method: Composition-based stats.
Identities = 41/238 (17%), Positives = 87/238 (36%), Gaps = 10/238 (4%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R+ GR+ + +R + + V GS + G+T L TATL + + + G +
Sbjct: 317 RIDGREPDMIRALDVMTGVLPRTHGSAIFTRGETQALVTATLGTERDSQMLDALSGTSNS 376
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
+ + V G R + R +++V+ I + ++ ++
Sbjct: 377 RFMLHYNFPPFCVGETGFVGSPKRREIGHGNLAKRGIQAVMPSLTEFPYSIRVVSEITES 436
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
+G + A++ G +AL + ++ + V + + + E
Sbjct: 437 NGSSSMASVCGTSLALMNAGVPVKASVAGIAMGLVKENENFVVLSD---------ILGDE 487
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
D D+D T +G I +Q + +++ LN AK ++ + IS
Sbjct: 488 DHLGDMDFKVAGTSNG-ITALQMDIKIEGITREIMQIALNQAKAARLHILGVMDQAIS 544
Score = 98.8 bits (244), Expect = 5e-19, Method: Composition-based stats.
Identities = 35/228 (15%), Positives = 72/228 (31%), Gaps = 27/228 (11%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----HGWITAEYGMLPR 68
++L +++ A+ + L GDT +L T +++ + G +P
Sbjct: 15 VTLETGAIARQADAAVLASIGDTSVLITVVGKKEAAPGQDFFPLTVNYQERMYAAGRIPG 74
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
R GR I R+I R +R + + Q+I +
Sbjct: 75 GFLKR------EGRPSDAETLIARLIDRPIRPLFPDGFVNEVQVIATVVSFNPEIQPDIV 128
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
+ G A G V A G + G +++ E +D
Sbjct: 129 TLIGTSAA-------------LAISGIPFNGPVGASRVGYINGQYVLNPSVKELEESQLD 175
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
T++ ++ V+ A S+D + +++ +I +
Sbjct: 176 LVVAGTEN-AVLMVESEANI--LSEDVMLGAVMYGHEQMQSIITAVAE 220
>gi|312112862|ref|YP_004010458.1| polyribonucleotide nucleotidyltransferase [Rhodomicrobium vannielii
ATCC 17100]
gi|311217991|gb|ADP69359.1| polyribonucleotide nucleotidyltransferase [Rhodomicrobium vannielii
ATCC 17100]
Length = 709
Score = 153 bits (386), Expect = 2e-35, Method: Composition-based stats.
Identities = 41/242 (16%), Positives = 86/242 (35%), Gaps = 18/242 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +R I V GS L G+T L ATL +E+ + T
Sbjct: 314 RIDGRDLKTVRPILSQVGVIPRTHGSSLFTRGETQALVVATLGTGEDEQWIDSLEGTYKE 373
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + + R+ G + RA+ ++ S + + +
Sbjct: 374 SFLLHYNFPPYSVGETGRMGSPGRREIGHGKL----AWRAVHPMMPKSDTFPYTVRVVSE 429
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ GA ++L D ++ + + + A+ +
Sbjct: 430 ITESNGSSSMASVCGASLSLMDAGVPIKAPVAGIAMGLIKEAEGVAVLSD---------I 480
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D + +G + +Q + + + L A + ++
Sbjct: 481 IGDEDHLGDMDFKVAGSANG-VTALQMDIKITGITTEIMKIALEQAHEGRLHILGEMSKA 539
Query: 238 IS 239
++
Sbjct: 540 LN 541
Score = 114 bits (284), Expect = 1e-23, Method: Composition-based stats.
Identities = 39/228 (17%), Positives = 73/228 (32%), Gaps = 27/228 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----HGWITAEYGML 66
R+++L +++ A+G+ L +G+T +L T E + G +
Sbjct: 14 RKLTLETGRIARQADGAVLAHYGETSVLATVVGERDADPSKDFFPLTVNYQEKAYAAGKI 73
Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
P R GR R + R+I R +R + Q+I+ +
Sbjct: 74 PGGYFKR------EGRPTERETLVSRLIDRPIRPLFAHGFKNETQVIVTVLSHDMENDPD 127
Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
A+ A A G +AA G G I++ + D
Sbjct: 128 IVAMVAASAA-------------LTISGLPFLGPIAASRVGYSKGEYILNPTSDQIKASD 174
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
+D T ++ V+ A+ S+D + + +I
Sbjct: 175 LDLVVAGTVD-AVLMVESEAKE--LSEDIMLGAVVFGQQGYKPVIDAI 219
>gi|261856059|ref|YP_003263342.1| polyribonucleotide nucleotidyltransferase [Halothiobacillus
neapolitanus c2]
gi|261836528|gb|ACX96295.1| polyribonucleotide nucleotidyltransferase [Halothiobacillus
neapolitanus c2]
Length = 698
Score = 153 bits (386), Expect = 2e-35, Method: Composition-based stats.
Identities = 39/242 (16%), Positives = 87/242 (35%), Gaps = 18/242 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +R I++ V GS L G+T L TL + ++ +
Sbjct: 315 RIDGRDTKTIRPITVRTGVLPRVHGSALFTRGETQALVVTTLGSARDAQLIDAVVGEYKE 374
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + A R+ G R +++V+ + + +
Sbjct: 375 SFIFHYNFPPYSVGETGRFGAPKRREIGHGNL----ARRGVKAVIPNPENSPYTLRVVSE 430
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ GA +++ D + + + +G+ + +
Sbjct: 431 ITESNGSSSMASVCGASLSMMDAGVEIAAPVAGIAMGLIKEGNRFVVLSD---------I 481
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T G + +Q + +++ L+ AK ++ +
Sbjct: 482 LGDEDHLGDMDFKVAGTADG-VTALQMDIKINGITREIMSQALDQAKGGRLHILGIMNAA 540
Query: 238 IS 239
++
Sbjct: 541 LA 542
Score = 64.5 bits (155), Expect = 1e-08, Method: Composition-based stats.
Identities = 35/220 (15%), Positives = 70/220 (31%), Gaps = 27/220 (12%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRN----TKHGWITAEYGMLPR 68
++LT +++ A G+ +V+ GDT +L T +E ++ G +P
Sbjct: 17 VTLTTGEIARQASGAVMVQMGDTVVLVTVVVESAPEPGQDFLPLTVEYQEKFYAAGRIPG 76
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
R GR I R+I R LR + Q+I + +
Sbjct: 77 GFFKR------EGRSTEAETLIARLIDRPLRPLFPKGFYNQVQVIAQVLSLDPEVPGDIP 130
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+ GA A H+ A G + +++ E + ++
Sbjct: 131 AMLGASAA-------------LALSGLPFDAHLGAARVGYINEAFVLNPAQTEMADSRLE 177
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIA 228
T+ ++ V+ +E + + +
Sbjct: 178 LVVAGTEE-AVLMVE--SEADRLPEATMLDAVMFGHEAAQ 214
>gi|291166373|gb|EFE28419.1| polyribonucleotide nucleotidyltransferase [Filifactor alocis ATCC
35896]
Length = 726
Score = 153 bits (386), Expect = 2e-35, Method: Composition-based stats.
Identities = 42/244 (17%), Positives = 85/244 (34%), Gaps = 18/244 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56
+R R +++R IS GS + G T +++ T E + +
Sbjct: 311 IRPDNRSMDEIRPISCEVGTLPRTHGSAIFTRGQTQVMSVTTLGALGEMQTLDGLDENIE 370
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y S G R+ G RA+ ++ + I +
Sbjct: 371 KRYMHHYNFPAYSVGEARPSRGPGRREIGHGAL----AERAILPMLPSKEEFAYAIRVVS 426
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V+ ++G T A++ G+ ++L D M+ + + + AI
Sbjct: 427 EVMSSNGSTSQASVCGSTLSLLDAGVPMKRMVAGIAMGLIKEDEHLAILSD--------- 477
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T+ G I +Q + + ++ L A+ ++ ++
Sbjct: 478 IQGMEDFLGDMDFKVAGTEEG-ITAIQMDIKISGIDEEILTKALEQARQGRLFILNKMRE 536
Query: 237 VISN 240
VIS+
Sbjct: 537 VISS 540
Score = 98.4 bits (243), Expect = 8e-19, Method: Composition-based stats.
Identities = 41/234 (17%), Positives = 84/234 (35%), Gaps = 27/234 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGML 66
R++ + V++ A G+CLV GDT +L TAT E + + + G +
Sbjct: 12 RQLKIEIGKVAELANGACLVSCGDTVVLVTATNSALPREGIDFFPLSVDFEERLYSVGKI 71
Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
P R GR ++ R+I R +R + Q++ ++ D
Sbjct: 72 PGGFIKR------EGRPSEKAILTSRLIDRPIRPLFPKGFRNDVQVVATVLSVEPDVTPD 125
Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
A+ G+ S G +++ G++ G I++ D + + D
Sbjct: 126 VLAMIGS-------------SIALSISSIPFNGPTGSVAVGLIDGQLILNPDVDQRAASD 172
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
+ T I+ V+ A ++ + A + I ++ + ++
Sbjct: 173 LHLTVSGTKD-AIMMVEAGANE--VTERTMLEAILYAHEEIKKIVSFIETIVEE 223
>gi|59711097|ref|YP_203873.1| polynucleotide phosphorylase/polyadenylase [Vibrio fischeri ES114]
gi|75354543|sp|Q5E7L1|PNP_VIBF1 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|59479198|gb|AAW84985.1| polynucleotide phosphorylase (PNPase) [Vibrio fischeri ES114]
Length = 709
Score = 153 bits (386), Expect = 2e-35, Method: Composition-based stats.
Identities = 45/242 (18%), Positives = 93/242 (38%), Gaps = 18/242 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR+++ +R + + V GS L G+T L TATL + ++ + K
Sbjct: 316 RIDGREKDMVRALDVRTGVLPRTHGSSLFTRGETQALVTATLGTQRDAQIIDSLMGEKKD 375
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P G + R+ G + R +++V+ + + +
Sbjct: 376 HFLLHYNFPPYCVGETGFVGSPKRREIGHGKL----AKRGIQAVMPSIEEFPYTVRVVSE 431
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ G +AL D ++ + V +G + +
Sbjct: 432 ITESNGSSSMASVCGTSLALMDAGVPIKASVAGIAMGLVKEGDDFVVLSD---------I 482
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T+ G I +Q + +++ LN A+ ++K+ +
Sbjct: 483 LGDEDHLGDMDFKVAGTNEG-ITALQMDIKIEGITKEIMQIALNQAQGARKHILKVMDEA 541
Query: 238 IS 239
IS
Sbjct: 542 IS 543
Score = 89.1 bits (219), Expect = 4e-16, Method: Composition-based stats.
Identities = 32/228 (14%), Positives = 72/228 (31%), Gaps = 27/228 (11%)
Query: 14 ISLTRRV-SKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----HGWITAEYGMLPR 68
++L V ++ A + + DT + + +++ + T G +P
Sbjct: 17 VTLETGVIARQATAAVMASMDDTSVFVSVVAKKEAVPGQDFFPLTVNYQERTYAAGKIPG 76
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
R GR R+I R +R + + Q+I I +
Sbjct: 77 GFFKR------EGRPSEAETLTARLIDRPIRPLFPDAFKNEVQVIATVVSINPEVNPDMI 130
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
+ G AL G + A G + G +++ E +D
Sbjct: 131 TMIGTSAALAIAGI-------------PFNGPIGAARVGHINGELVLNPSNTELENSKLD 177
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
T+ G ++ V+ +E +++ + + ++ +I +
Sbjct: 178 LVVSGTE-GAVLMVE--SEADNLTEEEMLSAVVFGHEQQQVVINAINE 222
>gi|326567242|gb|EGE17362.1| polynucleotide phosphorylase/polyadenylase [Moraxella catarrhalis
12P80B1]
Length = 695
Score = 153 bits (386), Expect = 2e-35, Method: Composition-based stats.
Identities = 43/238 (18%), Positives = 87/238 (36%), Gaps = 10/238 (4%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R+ GR +R + + V Y GS L G+T L TL + + +T G
Sbjct: 317 RIDGRDLETVRALDIQVGVLPYTHGSALFTRGETQALVVTTLGTTRDVNLVDTLAGTKQD 376
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
+ + V G R R+ R +++++ + I + ++ ++
Sbjct: 377 HFMLHYNFPHYSVGETGREGAPKRREIGHGRLARRGVQAMLPAAERFPYTIRVVSEITES 436
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
+G + A++ GA ++L D ++ + V +G A+ + E
Sbjct: 437 NGSSSMASVCGASLSLMDAGVPLKAPVAGIAMGLVKEGERFAVLSD---------ILGDE 487
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
D D+D + +G I +Q + + D L A ++ +VI+
Sbjct: 488 DHLGDMDFKVAGSVNG-ITALQMDIKIEGITADIMEQALKQAHAGRIHILNAMNEVIA 544
Score = 66.8 bits (161), Expect = 2e-09, Method: Composition-based stats.
Identities = 36/224 (16%), Positives = 62/224 (27%), Gaps = 22/224 (9%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGN 72
+ L +++ A S LV G P I +T Y ++G
Sbjct: 16 VVLETGRIARQAN-SVLVHMGGVS---VLVAVVVRPEAIAGQNFFPLTVNYQEKMYASGK 71
Query: 73 RVKREAVSG-RQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAIT 131
R R+I R +R + Q+ AA+
Sbjct: 72 IPGGYGKREGRASEFETLTSRLIDRPIRPLFPEGYFNEIQVTATVISSDKTQDADIAAMI 131
Query: 132 GAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANF 191
GA A G + A G + G +++ E D+D
Sbjct: 132 GASAA-------------LAISPAPFNGPIGAARVGFINGEYVLNPTLAEMKQSDLDLVV 178
Query: 192 VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
T S ++ V+ A+ S+D + + +I
Sbjct: 179 AGTKS-AVLMVESEAKE--LSEDQMLGAVLYGHGQQQVVIDNIN 219
>gi|294340865|emb|CAZ89260.1| Polyribonucleotide nucleotidyltransferase (Polynucleotide
phosphorylase) (PNPase) [Thiomonas sp. 3As]
Length = 719
Score = 153 bits (386), Expect = 2e-35, Method: Composition-based stats.
Identities = 46/248 (18%), Positives = 95/248 (38%), Gaps = 21/248 (8%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +R +S+ V GS L G+T L ATL + ++ +
Sbjct: 315 RIDGRDTRTVRPLSIRTSVLPRTHGSALFTRGETQALAVATLGTDQDAQIIDALGGEYRD 374
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y M P +TG + R+ G + RAL +V+ + + + +
Sbjct: 375 RFLLHYNMPPFATGETGRVGTPKRREIGHGRL----AKRALLAVLPKKEDFAYTMRVVSE 430
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
V +++G + A++ G +AL D ++ + + +G+ A+ +
Sbjct: 431 VTESNGSSSMASVCGGCLALLDAGVPLKAHVAGIAMGLIKEGNRFAVLTD---------I 481
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D + SG + +Q + +++ L A++ ++ + +
Sbjct: 482 LGDEDHLGDMDFKVAGSASG-VTALQMDIKIQGITREIMQVALAQAREARMHILGVMQQA 540
Query: 238 I---SNEV 242
+ EV
Sbjct: 541 VGGAREEV 548
Score = 91.1 bits (224), Expect = 1e-16, Method: Composition-based stats.
Identities = 34/232 (14%), Positives = 75/232 (32%), Gaps = 27/232 (11%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEE----KVPMWIRNTKHGWITAEYGMLPR 68
+++ +++ A G+ L+ DT +L T + + T G +P
Sbjct: 16 VTMETGEIARQASGAVLLNMDDTVVLATVVGARTAKAGQDFFPLTVDYIEKTYAAGRIPG 75
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
R GR R+I R +R + Q+++ I +
Sbjct: 76 GFFKR------EGRPSENETLTSRLIDRPIRPLFPEGFFNEVQVVVHVLSINPEVEADIP 129
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+ + AL G V A G + G +++ E + ++
Sbjct: 130 ALLASSAALAVSG-------------LPFNGPVGAARVGYVNGNYVLNPSRAELADSRLE 176
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
T+S ++ V+ +E S++ + + I +++ +
Sbjct: 177 LVVAGTES-AVLMVE--SEADQLSEEVMLEAVMFGHAQFQTAINAIHELVRD 225
>gi|326564308|gb|EGE14538.1| polynucleotide phosphorylase/polyadenylase [Moraxella catarrhalis
103P14B1]
gi|326574715|gb|EGE24651.1| polynucleotide phosphorylase/polyadenylase [Moraxella catarrhalis
101P30B1]
Length = 695
Score = 153 bits (386), Expect = 2e-35, Method: Composition-based stats.
Identities = 43/238 (18%), Positives = 87/238 (36%), Gaps = 10/238 (4%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R+ GR +R + + V Y GS L G+T L TL + + +T G
Sbjct: 317 RIDGRDLETVRALDIQVGVLPYTHGSALFTRGETQALVVTTLGTTRDVNLVDTLAGTKQD 376
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
+ + V G R R+ R +++++ + I + ++ ++
Sbjct: 377 HFMLHYNFPHYSVGETGREGAPKRREIGHGRLARRGVQAMLPAAERFPYTIRVVSEITES 436
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
+G + A++ GA ++L D ++ + V +G A+ + E
Sbjct: 437 NGSSSMASVCGASLSLMDAGVPLKAPVAGIAMGLVKEGERFAVLSD---------ILGDE 487
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
D D+D + +G I +Q + + D L A ++ +VI+
Sbjct: 488 DHLGDMDFKVAGSVNG-ITALQMDIKIEGITADIMEQALKQAHAGRIHILNAMNEVIA 544
Score = 66.8 bits (161), Expect = 2e-09, Method: Composition-based stats.
Identities = 36/224 (16%), Positives = 62/224 (27%), Gaps = 22/224 (9%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGN 72
+ L +++ A S LV G P I +T Y ++G
Sbjct: 16 VVLETGRIARQAN-SVLVHMGGVS---VLVAVVVRPEAIAGQNFFPLTVNYQEKMYASGK 71
Query: 73 RVKREAVSG-RQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAIT 131
R R+I R +R + Q+ AA+
Sbjct: 72 IPGGYGKREGRASEFETLTSRLIDRPIRPLFPEGYFNEIQVTATVISSDKTQDADIAAMI 131
Query: 132 GAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANF 191
GA A G + A G + G +++ E D+D
Sbjct: 132 GASAA-------------LAISPAPFNGPIGAARVGFINGEYVLNPTLAEMKQSDLDLVV 178
Query: 192 VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
T S ++ V+ A+ S+D + + +I
Sbjct: 179 AGTKS-AVLMVESEAKE--LSEDQMLGAVLYGHGQQQVVIDNIN 219
>gi|326559316|gb|EGE09743.1| polynucleotide phosphorylase/polyadenylase [Moraxella catarrhalis
7169]
gi|326569953|gb|EGE20000.1| polynucleotide phosphorylase/polyadenylase [Moraxella catarrhalis
BC1]
gi|326572889|gb|EGE22874.1| polynucleotide phosphorylase/polyadenylase [Moraxella catarrhalis
CO72]
gi|326573663|gb|EGE23621.1| polynucleotide phosphorylase/polyadenylase [Moraxella catarrhalis
O35E]
Length = 695
Score = 153 bits (386), Expect = 2e-35, Method: Composition-based stats.
Identities = 43/238 (18%), Positives = 87/238 (36%), Gaps = 10/238 (4%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R+ GR +R + + V Y GS L G+T L TL + + +T G
Sbjct: 317 RIDGRDLETVRALDIQVGVLPYTHGSALFTRGETQALVVTTLGTTRDVNLVDTLAGTKQD 376
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
+ + V G R R+ R +++++ + I + ++ ++
Sbjct: 377 HFMLHYNFPHYSVGETGREGAPKRREIGHGRLARRGVQAMLPAAERFPYTIRVVSEITES 436
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
+G + A++ GA ++L D ++ + V +G A+ + E
Sbjct: 437 NGSSSMASVCGASLSLMDAGVPLKAPVAGIAMGLVKEGERFAVLSD---------ILGDE 487
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
D D+D + +G I +Q + + D L A ++ +VI+
Sbjct: 488 DHLGDMDFKVAGSVNG-ITALQMDIKIEGITADIMEQALKQAHAGRIHILNAMNEVIA 544
Score = 66.8 bits (161), Expect = 2e-09, Method: Composition-based stats.
Identities = 36/224 (16%), Positives = 64/224 (28%), Gaps = 22/224 (9%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGN 72
+ L +++ A S LV G ++ P I +T Y ++G
Sbjct: 16 VVLETGRIARQAN-SVLVHMGG---VSVLVAVVVRPEAIAGQNFFPLTVNYQEKMYASGK 71
Query: 73 RVKREAVSG-RQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAIT 131
R R+I R +R + Q+ AA+
Sbjct: 72 IPGGYGKREGRASEFETLTSRLIDRPIRPLFPEGYFNEIQVTATVISSDKTQDADIAAMI 131
Query: 132 GAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANF 191
GA A G + A G + G +++ E D+D
Sbjct: 132 GASAA-------------LAISPAPFNGPIGAARVGFINGEYVLNPTLAEMKQSDLDLVV 178
Query: 192 VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
T S ++ V+ A+ S+D + + +I
Sbjct: 179 AGTKS-AVLMVESEAKE--LSEDQMLGAVLYGHGQQQVVIDNIN 219
>gi|296113971|ref|YP_003627909.1| polyribonucleotide nucleotidyltransferase [Moraxella catarrhalis
RH4]
gi|295921665|gb|ADG62016.1| polyribonucleotide nucleotidyltransferase [Moraxella catarrhalis
RH4]
Length = 696
Score = 153 bits (386), Expect = 2e-35, Method: Composition-based stats.
Identities = 43/238 (18%), Positives = 87/238 (36%), Gaps = 10/238 (4%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R+ GR +R + + V Y GS L G+T L TL + + +T G
Sbjct: 317 RIDGRDLETVRALDIQVGVLPYTHGSALFTRGETQALVVTTLGTTRDVNLVDTLAGTKQD 376
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
+ + V G R R+ R +++++ + I + ++ ++
Sbjct: 377 HFMLHYNFPHYSVGETGREGAPKRREIGHGRLARRGVQAMLPAAERFPYTIRVVSEITES 436
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
+G + A++ GA ++L D ++ + V +G A+ + E
Sbjct: 437 NGSSSMASVCGASLSLMDAGVPLKAPVAGIAMGLVKEGERFAVLSD---------ILGDE 487
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
D D+D + +G I +Q + + D L A ++ +VI+
Sbjct: 488 DHLGDMDFKVAGSVNG-ITALQMDIKIEGITADIMEQALKQAHAGRIHILNAMNEVIA 544
Score = 66.8 bits (161), Expect = 2e-09, Method: Composition-based stats.
Identities = 36/224 (16%), Positives = 62/224 (27%), Gaps = 22/224 (9%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGN 72
+ L +++ A S LV G P I +T Y ++G
Sbjct: 16 VVLETGRIARQAN-SVLVHMGGVS---VLVAVVVRPEAIAGQNFFPLTVNYQEKMYASGK 71
Query: 73 RVKREAVSG-RQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAIT 131
R R+I R +R + Q+ AA+
Sbjct: 72 IPGGYGKREGRASEFETLTSRLIDRPIRPLFPEGYFNEIQVTATVISSDKTQDADIAAMI 131
Query: 132 GAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANF 191
GA A G + A G + G +++ E D+D
Sbjct: 132 GASAA-------------LAISPAPFNGPIGAARVGFINGEYVLNPTLAEMKQSDLDLVV 178
Query: 192 VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
T S ++ V+ A+ S+D + + +I
Sbjct: 179 AGTKS-AVLMVESEAKE--LSEDQMLGAVLYGHGQQQVVIDNIN 219
>gi|326568253|gb|EGE18335.1| polynucleotide phosphorylase/polyadenylase [Moraxella catarrhalis
BC8]
Length = 695
Score = 153 bits (386), Expect = 2e-35, Method: Composition-based stats.
Identities = 43/238 (18%), Positives = 87/238 (36%), Gaps = 10/238 (4%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R+ GR +R + + V Y GS L G+T L TL + + +T G
Sbjct: 317 RIDGRDLETVRALDIQVGVLPYTHGSALFTRGETQALVVTTLGTTRDVNLVDTLAGTKQD 376
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
+ + V G R R+ R +++++ + I + ++ ++
Sbjct: 377 HFMLHYNFPHYSVGETGREGAPKRREIGHGRLARRGVQAMLPAAERFPYTIRVVSEITES 436
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
+G + A++ GA ++L D ++ + V +G A+ + E
Sbjct: 437 NGSSSMASVCGASLSLMDAGVPLKAPVAGIAMGLVKEGERFAVLSD---------ILGDE 487
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
D D+D + +G I +Q + + D L A ++ +VI+
Sbjct: 488 DHLGDMDFKVAGSVNG-ITALQMDIKIEGITADIMEQALKQAHAGRIHILNAMNEVIA 544
Score = 66.8 bits (161), Expect = 2e-09, Method: Composition-based stats.
Identities = 36/224 (16%), Positives = 62/224 (27%), Gaps = 22/224 (9%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGN 72
+ L +++ A S LV G P I +T Y ++G
Sbjct: 16 VVLETGRIARQAN-SVLVHMGGVS---VLVAVVVRPEAIAGQNFFPLTVNYQEKMYASGK 71
Query: 73 RVKREAVSG-RQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAIT 131
R R+I R +R + Q+ AA+
Sbjct: 72 IPGGYGKREGRASEFETLTSRLIDRPIRPLFPEGYFNEIQVTATVISSDKTQDADIAAMI 131
Query: 132 GAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANF 191
GA A G + A G + G +++ E D+D
Sbjct: 132 GASAA-------------LAISPAPFNGPIGAARVGFINGEYVLNPTLAEMKQSDLDLVV 178
Query: 192 VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
T S ++ V+ A+ S+D + + +I
Sbjct: 179 AGTKS-AVLMVESEAKE--LSEDQMLGAVLYGHGQQQVVIDNIN 219
>gi|294784020|ref|ZP_06749342.1| polyribonucleotide nucleotidyltransferase [Fusobacterium sp.
1_1_41FAA]
gi|294479832|gb|EFG27611.1| polyribonucleotide nucleotidyltransferase [Fusobacterium sp.
1_1_41FAA]
Length = 703
Score = 153 bits (386), Expect = 2e-35, Method: Composition-based stats.
Identities = 46/243 (18%), Positives = 91/243 (37%), Gaps = 18/243 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR ++R + V GS L G+T L TL +E++ + +
Sbjct: 328 RVDGRTTTEIRPLDAQINVLPIPHGSALFTRGETQSLAITTLGTKADEQLIDDLEKEYYK 387
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + + R+ G RALR V+ I + +
Sbjct: 388 KFYLHYNFPPYSVGEVGRMGSPGRRELGHGSL----AERALRYVIPSEEEFPYTIRVVSE 443
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A+I G ++L +++ + + +G + ++
Sbjct: 444 ITESNGSSSQASICGGSLSLMSAGVPIKEHVAGIAMGLIKEGEEFTVLTDIM-------- 495
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T SG I +Q + +++ LN A + ++++ +
Sbjct: 496 -GLEDHLGDMDFKVAGTKSG-ITALQMDIKITGITEEIMRIALNQAHEARIQILEVMNNT 553
Query: 238 ISN 240
IS
Sbjct: 554 ISK 556
Score = 101 bits (250), Expect = 1e-19, Method: Composition-based stats.
Identities = 39/229 (17%), Positives = 78/229 (34%), Gaps = 27/229 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGML 66
R + ++ +S+ + G+ ++++GDT +L+TA + + + G
Sbjct: 18 RTLKVSTGKISRQSSGAIVIQYGDTVVLSTANRSKEARKGADFFPLTVDYVEKFYSTGKF 77
Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
P R GR + I R+I R +R + I+
Sbjct: 78 PGGFNKR------EGRPSTNATLIARLIDRPIRPMFPDGFNYDVHIVNTVLSYDEVNTPD 131
Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
I G+ +AL G VA ++ G G I++ E +
Sbjct: 132 YLGIIGSSLALM-------------ISDIPFLGPVAGVTVGYKNGEFILNPSPAELEESE 178
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
+D + T + V+ A+ ++ + A D I + + Q+
Sbjct: 179 LDLSVAGTKD-AVNMVEAGAKE--LDEETMLKAIMFAHDNIKKICEFQE 224
>gi|326570032|gb|EGE20078.1| polynucleotide phosphorylase/polyadenylase [Moraxella catarrhalis
BC7]
Length = 696
Score = 153 bits (386), Expect = 2e-35, Method: Composition-based stats.
Identities = 43/238 (18%), Positives = 87/238 (36%), Gaps = 10/238 (4%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R+ GR +R + + V Y GS L G+T L TL + + +T G
Sbjct: 317 RIDGRDLETVRALDIQVGVLPYTHGSALFTRGETQALVVTTLGTTRDVNLVDTLAGTKQD 376
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
+ + V G R R+ R +++++ + I + ++ ++
Sbjct: 377 HFMLHYNFPHYSVGETGREGAPKRREIGHGRLARRGVQAMLPAAERFPYTIRVVSEITES 436
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
+G + A++ GA ++L D ++ + V +G A+ + E
Sbjct: 437 NGSSSMASVCGASLSLMDAGVPLKAPVAGIAMGLVKEGERFAVLSD---------ILGDE 487
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
D D+D + +G I +Q + + D L A ++ +VI+
Sbjct: 488 DHLGDMDFKVAGSVNG-ITALQMDIKIEGITADIMEQALKQAHAGRIHILNAMNEVIA 544
Score = 66.8 bits (161), Expect = 2e-09, Method: Composition-based stats.
Identities = 36/224 (16%), Positives = 62/224 (27%), Gaps = 22/224 (9%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGN 72
+ L +++ A S LV G P I +T Y ++G
Sbjct: 16 VVLETGRIARQAN-SVLVHMGGVS---VLVAVVVRPEAIAGQNFFPLTVNYQEKMYASGK 71
Query: 73 RVKREAVSG-RQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAIT 131
R R+I R +R + Q+ AA+
Sbjct: 72 IPGGYGKREGRASEFETLTSRLIDRPIRPLFPEGYFNEIQVTATVISSDKTQDADIAAMI 131
Query: 132 GAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANF 191
GA A G + A G + G +++ E D+D
Sbjct: 132 GASAA-------------LAISPAPFNGPIGAARVGFINGEYVLNPTLAEMKQSDLDLVV 178
Query: 192 VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
T S ++ V+ A+ S+D + + +I
Sbjct: 179 AGTKS-AVLMVESEAKE--LSEDQMLGAVLYGHGQQQVVIDNIN 219
>gi|148272475|ref|YP_001222036.1| ribonuclease PH [Clavibacter michiganensis subsp. michiganensis
NCPPB 382]
gi|147830405|emb|CAN01340.1| ribonuclease PH (tRNA nucleotidyltransferase) [Clavibacter
michiganensis subsp. michiganensis NCPPB 382]
Length = 245
Score = 153 bits (386), Expect = 2e-35, Method: Composition-based stats.
Identities = 120/239 (50%), Positives = 156/239 (65%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R GR +Q+REI++ R S+ AEGS L+ FG T +L TA+ +VP W + GW+TA
Sbjct: 7 RHDGRTADQLREITIERNWSEQAEGSALISFGRTRVLCTASFTNRVPRWKAGSGQGWVTA 66
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
EY MLPR+T R+ REAV G+ GGR+ EI R+IGR+LR+VVD+ ALG I+IDCDV+QA
Sbjct: 67 EYAMLPRATNERMDREAVKGKVGGRTHEISRLIGRSLRAVVDMKALGENTIVIDCDVLQA 126
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
DGGTRTAAITGA+VAL D L+ + Q + LK VAA+S G++ G P++DL Y E
Sbjct: 127 DGGTRTAAITGAYVALADALEWGREKKFIAQRATPLKDSVAAVSVGIVDGKPLLDLAYVE 186
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
D + D N VMT SG VEVQG+AE A F + A+L+LA L LQ +
Sbjct: 187 DVRAETDMNVVMTGSGSFVEVQGTAEGAPFDRAELDALLDLALGGGTTLTALQAQALGR 245
>gi|71908066|ref|YP_285653.1| polynucleotide phosphorylase/polyadenylase [Dechloromonas aromatica
RCB]
gi|123760455|sp|Q47D98|PNP_DECAR RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|71847687|gb|AAZ47183.1| 3' exoribonuclease:RNA binding S1:KH, type 1 [Dechloromonas
aromatica RCB]
Length = 715
Score = 153 bits (386), Expect = 2e-35, Method: Composition-based stats.
Identities = 47/239 (19%), Positives = 93/239 (38%), Gaps = 18/239 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +R I++ V GS L G+T L ATL +E++ +
Sbjct: 316 RIDGRDTRTVRPITMRSGVLPRTHGSALFTRGETQALAVATLGTNRDEQIIDALAGEYRD 375
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y M P +TG + R+ G + RAL +V+ S + + +
Sbjct: 376 RFMLHYNMPPYATGECGRVGTPKRREIGHGRL----AKRALLAVLPKPEDFSYSMRLVSE 431
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ G +AL D ++ + + G+ A+ +
Sbjct: 432 ITESNGSSSMASVCGGCLALLDAGVPLKAHVAGIAMGLIKDGNRFAVLTD---------I 482
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
ED D+D + +G I +Q + +++ L AK+ ++ L ++
Sbjct: 483 LGDEDHLGDMDFKVAGSTTG-ITALQMDIKIQGITKEIMQVALAQAKEARIHILNLMQE 540
Score = 78.3 bits (191), Expect = 7e-13, Method: Composition-based stats.
Identities = 34/232 (14%), Positives = 73/232 (31%), Gaps = 27/232 (11%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT----KHGWITAEYGMLPR 68
+++ V++ A G+ LV +T +L T + + T G +P
Sbjct: 16 VTIETGEVARQAGGAVLVSMEETVVLVTVVAAKNAKPGQDFFPLTVDYQEKTYAAGRIPG 75
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
R GR + R+I R +R + Q+I + + +
Sbjct: 76 GFFKR------EGRPSEKETLTCRLIDRPIRPLFPDGFYNEVQVIATVMSLNPEIDSDIP 129
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+ GA A G + A G + G ++ + +D
Sbjct: 130 ALIGASAA-------------LAISGVPFNGPIGAARVGYIDGQYVLCPTLSQLKGSQLD 176
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
T++ ++ V+ +E S++ + + I +++
Sbjct: 177 LVVAGTEA-AVLMVE--SEADQLSEEVMLGAVVFGHTEMQKAINAINELVEE 225
>gi|315126162|ref|YP_004068165.1| polynucleotide phosphorylase/polyadenylase [Pseudoalteromonas sp.
SM9913]
gi|315014676|gb|ADT68014.1| polynucleotide phosphorylase/polyadenylase [Pseudoalteromonas sp.
SM9913]
Length = 708
Score = 153 bits (386), Expect = 2e-35, Method: Composition-based stats.
Identities = 43/242 (17%), Positives = 88/242 (36%), Gaps = 18/242 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR+ + +R + + V GS + G+T L TATL + ++ + T
Sbjct: 317 RIDGREPDMIRALDVMTGVLPRTHGSAIFTRGETQALVTATLGTERDSQLIDDLTGTHKN 376
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P G + R+ G R +++V+ I + +
Sbjct: 377 HFMLNYNFPPFCVGETGFVGSPKRREIGHGNL----AKRGIQAVMPTLTEFPYSIRVVSE 432
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ G +AL + ++ + V + + +
Sbjct: 433 ITESNGSSSMASVCGTSLALMNAGVPIKASVAGIAMGLVKEEENFVVLSD---------I 483
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T +G I +Q + +Q+ L AK ++ + +
Sbjct: 484 LGDEDHLGDMDFKVAGTTNG-ITALQMDIKIEGITQEIMQIALKQAKAARLHILGVMDEA 542
Query: 238 IS 239
IS
Sbjct: 543 IS 544
Score = 101 bits (252), Expect = 6e-20, Method: Composition-based stats.
Identities = 36/228 (15%), Positives = 73/228 (32%), Gaps = 27/228 (11%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----HGWITAEYGMLPR 68
++L +++ A+G+ L GDT +L T + + + G +P
Sbjct: 15 VTLETGAIARQADGAVLASIGDTSVLVTVVGKREAQPGQDFFPLTVNYQERMYAAGRIPG 74
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
R GR I R+I R +R + + Q+I + +
Sbjct: 75 GFLKR------EGRPNDGETLIARLIDRPIRPLFPNGFVNEVQVIATVVSVNPEIQPDMV 128
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+ G A G + A G + G +++ E +D
Sbjct: 129 AMIGTSAA-------------LAISGIPFSGPIGASRVGYINGEYVLNPTLKELEESQLD 175
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
T ++ V+ +E ++D + ++ +IK +
Sbjct: 176 LVVAGT-DNAVLMVE--SEADVLAEDVMLGAVVYGHEQSQSIIKAINE 220
>gi|296136710|ref|YP_003643952.1| polyribonucleotide nucleotidyltransferase [Thiomonas intermedia
K12]
gi|295796832|gb|ADG31622.1| polyribonucleotide nucleotidyltransferase [Thiomonas intermedia
K12]
Length = 719
Score = 153 bits (386), Expect = 2e-35, Method: Composition-based stats.
Identities = 46/248 (18%), Positives = 95/248 (38%), Gaps = 21/248 (8%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +R +S+ V GS L G+T L ATL + ++ +
Sbjct: 315 RIDGRDTRTVRPLSIRTSVLPRTHGSALFTRGETQALAVATLGTDQDAQIIDALGGEYRD 374
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y M P +TG + R+ G + RAL +V+ + + + +
Sbjct: 375 RFLLHYNMPPFATGETGRVGTPKRREIGHGRL----AKRALLAVLPKKEDFAYTMRVVSE 430
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
V +++G + A++ G +AL D ++ + + +G+ A+ +
Sbjct: 431 VTESNGSSSMASVCGGCLALLDAGVPLKAHVAGIAMGLIKEGNRFAVLTD---------I 481
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D + SG + +Q + +++ L A++ ++ + +
Sbjct: 482 LGDEDHLGDMDFKVAGSASG-VTALQMDIKIQGITREIMQVALAQAREARMHILGVMQQA 540
Query: 238 I---SNEV 242
+ EV
Sbjct: 541 VGGAREEV 548
Score = 91.4 bits (225), Expect = 9e-17, Method: Composition-based stats.
Identities = 33/232 (14%), Positives = 74/232 (31%), Gaps = 27/232 (11%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEE----KVPMWIRNTKHGWITAEYGMLPR 68
+++ +++ A G+ L+ DT +L T + + T G +P
Sbjct: 16 VTMETGEIARQASGAVLLNMDDTVVLATVVGARTAKAGQDFFPLTVDYIEKTYAAGRIPG 75
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
R GR I R+I R +R + Q+++ I +
Sbjct: 76 GFFKR------EGRPSENETLISRLIDRPIRPLFPEGFFNEVQVVVHVLSINPEVEADIP 129
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+ + G V A G + G +++ E + ++
Sbjct: 130 ALLAT-------------SAALAVSGLPFNGPVGAARVGYVNGNYVLNPSRAELADSRLE 176
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
T+S ++ V+ +E S++ + + I +++ +
Sbjct: 177 LVVAGTES-AVLMVE--SEADQLSEEVMLEAVMFGHAQFQTAINAIHELVRD 225
>gi|270158094|ref|ZP_06186751.1| polyribonucleotide nucleotidyltransferase [Legionella longbeachae
D-4968]
gi|289163641|ref|YP_003453779.1| Polynucleotide phosphorylase (PNPase) [Legionella longbeachae
NSW150]
gi|269990119|gb|EEZ96373.1| polyribonucleotide nucleotidyltransferase [Legionella longbeachae
D-4968]
gi|288856814|emb|CBJ10625.1| Polynucleotide phosphorylase (PNPase) [Legionella longbeachae
NSW150]
Length = 721
Score = 153 bits (386), Expect = 2e-35, Method: Composition-based stats.
Identities = 43/240 (17%), Positives = 90/240 (37%), Gaps = 10/240 (4%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R+ GR +R IS+ ++ + A GS L G+T + ATL + I + G
Sbjct: 314 RIDGRDCKTVRPISIRTKLLERAHGSVLFTRGETQAIVVATLGNERDAQILDNITGESKD 373
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
+ + V + G R R+ RA+ +V+ S + + ++ ++
Sbjct: 374 RFMLHYNFPPYSVGETGMIGSPKRREIGHGRLAKRAIMAVLPESNDFPYVLRVVSEITES 433
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
+G + A + G +AL D ++ + + +G A+ + E
Sbjct: 434 NGSSSMATVCGTSLALMDAGVPLKAPVAGVAMGLIKEGDRYAVLTD---------ILGDE 484
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
D D+D T+ G I +Q + + L+ A + ++ + + ++
Sbjct: 485 DHLGDMDFKVAGTEHG-ITALQMDIKIQGITSAIMEQALDQALEGRMYILGVMNNALAEH 543
Score = 103 bits (256), Expect = 2e-20, Method: Composition-based stats.
Identities = 36/228 (15%), Positives = 70/228 (30%), Gaps = 27/228 (11%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGMLPR 68
+ L V++ A+G+ T +L T E + + G +P
Sbjct: 15 LILETGEVARQADGAVFASMNGTQVLATVVGKKDGGENSGFFPLTVNYQEKFYAVGKIPG 74
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
R GR I R+I R +R + Q+I + +
Sbjct: 75 GFNKR------EGRPTELETLISRLIDRPIRPLFPEGFCNEVQVIATVLSLNPEVSPDIV 128
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+ + A G + A G G +++ E +D
Sbjct: 129 AMIASSAA-------------LALSGVPFNGPIGAARVGYRDGIYLLNPSRKELEHSKLD 175
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
T + I+ V+ A+ S+D + + + ++IK ++
Sbjct: 176 LVVAGTKN-AILMVESEAKE--LSEDIMRGAIMFGHEMMKNVIKAIEE 220
>gi|259417548|ref|ZP_05741467.1| polyribonucleotide nucleotidyltransferase [Silicibacter sp.
TrichCH4B]
gi|259346454|gb|EEW58268.1| polyribonucleotide nucleotidyltransferase [Silicibacter sp.
TrichCH4B]
Length = 712
Score = 153 bits (386), Expect = 2e-35, Method: Composition-based stats.
Identities = 45/243 (18%), Positives = 90/243 (37%), Gaps = 17/243 (6%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +Q+R I + GS L G+T L TL +E+ +
Sbjct: 318 RIDGRALDQVRAIECQTGLLPRTHGSALFTRGETQGLVVTTLGTGDDEQFIDALHGNFKS 377
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + + R+ G + RAL++V+ I + +
Sbjct: 378 NFLLHYNFPPYSVGEVGRVGSPGRREIGHGKL----AWRALQAVLPAPTDFPYTIRVVSE 433
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ G +++ D ++ + VL+ + + D+
Sbjct: 434 ITESNGSSSMASVCGGSLSMMDAGVPLKAPVAGVAMGLVLEDDGS--------YGILTDI 485
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T++G I +Q + A + + L AK ++
Sbjct: 486 LGDEDHLGDMDFKVAGTEAG-ITSLQMDIKVAGITPEIMKNALAQAKAGRLHILGEMAKS 544
Query: 238 ISN 240
++
Sbjct: 545 LTE 547
Score = 101 bits (250), Expect = 1e-19, Method: Composition-based stats.
Identities = 31/232 (13%), Positives = 66/232 (28%), Gaps = 33/232 (14%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT----KHGWITAEYGMLPR 68
++L V++ A+G+ + G+T ++ T + + G +P
Sbjct: 16 LTLETGKVARQADGTVIATLGETSVMANVTYAREQKPGQDFFPLTVHYQEKYYAAGKIPG 75
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
R R + R+I R +R + ++
Sbjct: 76 GFFKR------EARPTEKETLTARLIDRPIRPLFVPGFKNEVLVMCTVLSHDLVNDPDIV 129
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDST---- 184
A+ A A G +A G G I++ +
Sbjct: 130 AMIAASAA-------------LTISGVPFMGPIAGARVGYEDGEYILNPTVDDMQDLRLN 176
Query: 185 --IDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
+D T ++ V+ A +++ + A ++I +I L
Sbjct: 177 PEQRLDLVVAGTKD-AVMMVESEAYE--LTEEEMLGAVTFAHEQIQPVIDLI 225
>gi|239816487|ref|YP_002945397.1| polynucleotide phosphorylase/polyadenylase [Variovorax paradoxus
S110]
gi|259534173|sp|C5CT24|PNP_VARPS RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|239803064|gb|ACS20131.1| Polyribonucleotide nucleotidyltransferase [Variovorax paradoxus
S110]
Length = 772
Score = 153 bits (386), Expect = 2e-35, Method: Composition-based stats.
Identities = 43/243 (17%), Positives = 89/243 (36%), Gaps = 18/243 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +R I + V GS L G+T L TL + + +
Sbjct: 317 RIDGRDTRTVRPIEIRNSVLPRTHGSALFTRGETQGLVVTTLGTERDAQRIDALAGEYED 376
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y M P +TG + + R+ G + RAL +V+ I + +
Sbjct: 377 RFLFHYNMPPFATGEVGRMGSTKRREIGHGRL----AKRALVAVLPTKEEFPYTIRVVSE 432
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ G +++ D M+ + + + + A+ +
Sbjct: 433 ITESNGSSSMASVCGGCLSMMDAGVPMKAHVAGIAMGLIKEDNRFAVLTD---------I 483
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T +G I +Q + +++ L AK+ ++ ++
Sbjct: 484 LGDEDHLGDMDFKVAGTTNG-ITALQMDIKIQGITKEIMQVALAQAKEARMHILGKMQEA 542
Query: 238 ISN 240
+
Sbjct: 543 MGE 545
Score = 87.6 bits (215), Expect = 2e-15, Method: Composition-based stats.
Identities = 33/233 (14%), Positives = 73/233 (31%), Gaps = 31/233 (13%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT----KHGWITAEYGMLPR 68
+ + +++ A G+ +V T +L T + + T G +P
Sbjct: 18 VVMETGEIARQASGAVVVDIDGTVILATVVASKTAKPGQDFFPLTVDYIEKTYAAGKIPG 77
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
S R + R+I R +R + L ++I + + A
Sbjct: 78 SFFKR------EAKPSEHETLTSRLIDRPIRPLFPEGFLNEVHVVIHTLSLNPEVDADIA 131
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+ G A G + A G + G +++ +D
Sbjct: 132 AMIGVSAA-------------LSISGIPFSGPIGAARVGYINGQYVLNPGQTARKDSQMD 178
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKD----RIADLIKLQKDV 237
T++ ++ V+ A++ S++ + + I + +L +D
Sbjct: 179 LVVAGTEA-AVLMVESEAQQ--LSEEIMLGGVVFGHEQANIAINAIHELVRDA 228
>gi|114566439|ref|YP_753593.1| polynucleotide phosphorylase/polyadenylase [Syntrophomonas wolfei
subsp. wolfei str. Goettingen]
gi|122318489|sp|Q0AYI2|PNP_SYNWW RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|114337374|gb|ABI68222.1| Polyribonucleotide nucleotidyltransferase [Syntrophomonas wolfei
subsp. wolfei str. Goettingen]
Length = 703
Score = 153 bits (386), Expect = 2e-35, Method: Composition-based stats.
Identities = 47/241 (19%), Positives = 95/241 (39%), Gaps = 18/241 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR+ +++R++S GS L G T +L+ TL EE+ + +
Sbjct: 313 RVDGRKLDEIRKVSCEVGFLPRPHGSGLFTRGQTQVLSVTTLGAISEEQRLDGLGIEEKK 372
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P STG R+ G RAL +V+ I + +
Sbjct: 373 RYIHHYNFPPYSTGETKPMRGPGRREIGHGAL----AERALLAVIPSEEEFPYTIRVVSE 428
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
V++++G + ++ G+ ++L ++ + + V +G A + D+
Sbjct: 429 VLESNGSSSMGSVCGSTLSLMHAGVPIKAPVSGIAMGLVKEGERFA---------IMSDI 479
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED+ D+D T+ G + +Q + +++ A L A++ ++K +
Sbjct: 480 QGIEDALGDMDFKLAGTEKG-VTALQMDIKITGVNREIVEAALKQAREGRMFILKKMLEA 538
Query: 238 I 238
I
Sbjct: 539 I 539
Score = 111 bits (276), Expect = 1e-22, Method: Composition-based stats.
Identities = 46/234 (19%), Positives = 88/234 (37%), Gaps = 27/234 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEK----VPMWIRNTKHGWITAEYGML 66
R + + V++ A G+ L+++GDT +L TAT ++ + + + G +
Sbjct: 13 RPLIVEIGQVAQQANGAALMRYGDTVVLVTATAAKQPREGIDFFPLTVDYEEKQYAVGKI 72
Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
P R GR ++ R+I R +R + ++ ++ D
Sbjct: 73 PGGFIKR------EGRATAQATLSARLIDRPIRPLFPKGFRNEIHVVATILSVEKDNAPD 126
Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
AITGA VA G VAA+ G++ G I++ + D
Sbjct: 127 VTAITGASVA-------------LSISDIPFAGPVAAVIVGLVDGELIINPTVEQHQKSD 173
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
+ T I+ V+G A ++ + A + I ++ Q+++I
Sbjct: 174 LHLAVAGTKE-AIMMVEGGANEVP--EETMRDAIFFAHEEIKKIVDFQENIIRE 224
>gi|269218709|ref|ZP_06162563.1| tRNA nucleotidyltransferase [Actinomyces sp. oral taxon 848 str.
F0332]
gi|269211820|gb|EEZ78160.1| tRNA nucleotidyltransferase [Actinomyces sp. oral taxon 848 str.
F0332]
Length = 245
Score = 153 bits (386), Expect = 2e-35, Method: Composition-based stats.
Identities = 109/231 (47%), Positives = 147/231 (63%)
Query: 11 MREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRST 70
MR +S++R EGS LV FG T +L A+ E VP W ++T GW+TAEY MLPR+T
Sbjct: 1 MRPVSISRGWLDAGEGSVLVSFGKTTVLCVASFTEGVPRWRKDTGLGWVTAEYSMLPRAT 60
Query: 71 GNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAI 130
R RE+V G+ GGR+ EI R+IGRALR+ VD+ ALG I +DCDV++ADGGTRTA+I
Sbjct: 61 DERSARESVKGKIGGRTHEISRLIGRALRACVDMRALGENTIQLDCDVLRADGGTRTASI 120
Query: 131 TGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDAN 190
TGA+ AL D + VL V+A+S G++ G P++DL Y EDS D D N
Sbjct: 121 TGAFAALADAVDWAVGEGIVKPRRPVLSDTVSAVSVGVVDGRPVLDLPYEEDSRADTDMN 180
Query: 191 FVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
V T +G +E+QG+AERA FS+ +L+LA A L +QK+ ++ E
Sbjct: 181 VVATGAGQFIEIQGTAERAPFSRGELGELLDLAAIGTAHLAAVQKEALTGE 231
>gi|189499525|ref|YP_001958995.1| polynucleotide phosphorylase/polyadenylase [Chlorobium
phaeobacteroides BS1]
gi|226702633|sp|B3EMN6|PNP_CHLPB RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|189494966|gb|ACE03514.1| Polyribonucleotide nucleotidyltransferase [Chlorobium
phaeobacteroides BS1]
Length = 734
Score = 153 bits (386), Expect = 2e-35, Method: Composition-based stats.
Identities = 46/243 (18%), Positives = 89/243 (36%), Gaps = 18/243 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
RL GR+ ++R IS+ + A GS L G+T L TL + ++ + +
Sbjct: 332 RLDGRKLEEVRPISIELGLIPRAHGSALFTRGETQALVVLTLGTKKDAQMIDTLLDDTEK 391
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + V R+ G RA++ VV + I + +
Sbjct: 392 RFMLHYNFPPFSVGETGRVGGVGRREIGHGNL----AERAVKKVVPSESEFPYTIRLVSE 447
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+++++G + A++ GA +A D + + + + + A+ +
Sbjct: 448 ILESNGSSSMASVCGATLAAMDGGVPLTKPVSGIAMGLIKEDDNYAVLSD---------I 498
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T G I Q + L +K+ ++ +
Sbjct: 499 LGNEDHLGDMDFKVAGTRDG-ITACQMDIKIDGLDYHILEKALEQSKNGRLHILDKMTES 557
Query: 238 ISN 240
I++
Sbjct: 558 IAD 560
Score = 106 bits (264), Expect = 3e-21, Method: Composition-based stats.
Identities = 40/229 (17%), Positives = 75/229 (32%), Gaps = 20/229 (8%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGN 72
I++ ++K A+G+ +V+ GDT ++ T P N + EY + G
Sbjct: 15 ITIETGKMAKQADGATIVRMGDTMVIATVVSSRTPPSP--NQDFFPMQVEYREKYYAAGK 72
Query: 73 RVKREAVSG-RQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAIT 131
R + R+I RALR + QIII
Sbjct: 73 FPGGFIKRESRPSEKEILSARLIDRALRPLFPNGYYQDTQIIISVISSDQLNDADVLGGI 132
Query: 132 GAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANF 191
A A+ ++ + G + G +++ E + D+D +
Sbjct: 133 AASAAIM-------------VSDIPFANSMSEVRVGRINGEFVINPTINELAQSDIDISI 179
Query: 192 VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
T+ I ++ E S+ + + I + LQ D+ +
Sbjct: 180 GGTND-TICMLE--GEMNEISEAEMLEAIRFGHEAIKKICSLQDDIAAE 225
>gi|329113570|ref|ZP_08242350.1| Polyribonucleotide nucleotidyltransferase [Acetobacter pomorum
DM001]
gi|326697092|gb|EGE48753.1| Polyribonucleotide nucleotidyltransferase [Acetobacter pomorum
DM001]
Length = 716
Score = 153 bits (386), Expect = 2e-35, Method: Composition-based stats.
Identities = 41/243 (16%), Positives = 85/243 (34%), Gaps = 18/243 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +R I + GS L G+T L TL +E+V +
Sbjct: 314 RIDGRDLVTVRPIVPEVGILPRVHGSSLFTRGETQALVVTTLGTGQDEQVIDALEGEYRT 373
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + + R+ G + RA+ ++ + + +
Sbjct: 374 NFMLHYNFPPFSVGECGRIGSPGRREIGHGKL----AWRAIHPLMPSRKEFPYTVRVVSE 429
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A + G +AL D ++ + + +G A+ +
Sbjct: 430 ITESNGSSSMATVCGGSLALMDAGVPLKRPVAGIAMGLIKEGDDFAVLSD---------I 480
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T+ G + +Q + + + + L A+D ++
Sbjct: 481 LGDEDHLGDMDFKVAGTEQG-VTALQMDIKITSITPEIMKIALGQARDGRMHILGEMSKA 539
Query: 238 ISN 240
++
Sbjct: 540 LTE 542
Score = 104 bits (260), Expect = 8e-21, Method: Composition-based stats.
Identities = 38/235 (16%), Positives = 73/235 (31%), Gaps = 28/235 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----HGWITAEYGML 66
R + L V++ A+G+ +V +G+T +L TA ++V + G +
Sbjct: 14 RPLILETGKVARQADGAVMVTYGETVVLCTAVGAKEVKPGQDFFPLTVNYQEKAYAAGKI 73
Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
P R GR + R+I R LR + Q+I +
Sbjct: 74 PGGFFKR------EGRPSENETLVSRLIDRPLRPLFPEGFRNEVQVIATVLTHDMENDPS 127
Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
A+ G A G V A G G I++ + D
Sbjct: 128 IPALIGCSAA-------------LTLSGIPFFGPVGAARVGFKDGAFILNPTQEQIKESD 174
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
++ T G ++ V+ A + ++ + ++ ++
Sbjct: 175 LELVVAGTAEG-VLMVESEASELS--EEVMLDAVTFGHTAFQPVLDAI-ISLAEH 225
>gi|326388041|ref|ZP_08209645.1| polynucleotide phosphorylase/polyadenylase [Novosphingobium
nitrogenifigens DSM 19370]
gi|326207542|gb|EGD58355.1| polynucleotide phosphorylase/polyadenylase [Novosphingobium
nitrogenifigens DSM 19370]
Length = 763
Score = 153 bits (386), Expect = 2e-35, Method: Composition-based stats.
Identities = 50/243 (20%), Positives = 86/243 (35%), Gaps = 18/243 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKHG 57
R+ GR Q+R I GS L G+T + T TL E++ + +
Sbjct: 314 RIDGRTVTQVRPIESIVGFLPRTHGSALFTRGETQTICTTTLGTKDAEQMIDGLDGLTYQ 373
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + A R+ G + RAL V+ I + D
Sbjct: 374 RFMLHYNFPPYSVGEVGRFGAPGRREIGHGKL----AWRALNPVLPSKEDFPYTIRVLSD 429
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
V +++G + A + G ++L D + + + +L+G + +
Sbjct: 430 VTESNGSSSMATVCGGCLSLMDAGVPILRPVSGIAMGLILEGDDFTVLSD---------I 480
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T G I +Q + A +++ F L AK A ++
Sbjct: 481 LGDEDHLGDMDFKVAGTSEG-ITSLQMDIKVAGITEEIFRTALAQAKGGRAHILGEMTRA 539
Query: 238 ISN 240
+
Sbjct: 540 LGE 542
Score = 102 bits (254), Expect = 4e-20, Method: Composition-based stats.
Identities = 32/233 (13%), Positives = 75/233 (32%), Gaps = 28/233 (12%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT----KHGWITAEYGMLPR 68
++L +++ A+G+ L +G+T +L T + V + + G +P
Sbjct: 16 LTLETGRIARQADGAVLATYGETVVLCAVTAAKSVKEGQDFFPLTVHYQEKFSAAGRIPG 75
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
R + + + R+I R +R + +I +
Sbjct: 76 GFFKRERGA------TEKETLVSRLIDRPVRPLFPEGFYNEINVIAQVMSYDGETEPDIV 129
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+ A A G + A G G ++ + + + +D
Sbjct: 130 AMIAASAA-------------LTISGVPFLGPIGAARVGFKDGEYQLNPNMAQVAEGRLD 176
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
TD+ ++ V+ A+ ++D + A +I + ++ +
Sbjct: 177 LVVAATDT-AVMMVESEAKE--LTEDEMLGAVMFAHAESRKVIGAIIE-LAEK 225
>gi|229918674|ref|YP_002887320.1| polyribonucleotide nucleotidyltransferase [Exiguobacterium sp.
AT1b]
gi|259534123|sp|C4L6J6|PNP_EXISA RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|229470103|gb|ACQ71875.1| Polyribonucleotide nucleotidyltransferase [Exiguobacterium sp.
AT1b]
Length = 738
Score = 153 bits (386), Expect = 2e-35, Method: Composition-based stats.
Identities = 45/243 (18%), Positives = 92/243 (37%), Gaps = 18/243 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56
+R GR+ + +R ++ + A G L G T +++ AT + ++ I ++
Sbjct: 315 VRPDGRRPDVIRPLASEVGLLPRAHGVGLFTRGQTQVMSVATLGVIGDAQIIDGIGLEEN 374
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P S G A R+ G RAL ++ A I +
Sbjct: 375 KRFMHHYNFPPFSVGEARPVRAPGRREIGHGALG----ERALLPIIPKEADFPYTIRLVS 430
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V++++G + A+I G+ +AL D ++ + +++G + D
Sbjct: 431 EVLESNGSSSQASICGSTLALMDAGVPIKAPVAGIAMGLIMEGE---------HYTVLTD 481
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T G I +Q + A +++ L A+ ++ +
Sbjct: 482 IQGLEDHLGDMDFKVAGTKDG-ITALQMDIKIAGITREILEEALEQARVGRLHILDHMLE 540
Query: 237 VIS 239
+
Sbjct: 541 TLE 543
Score = 115 bits (288), Expect = 4e-24, Method: Composition-based stats.
Identities = 44/232 (18%), Positives = 83/232 (35%), Gaps = 26/232 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTAT---LEEKVPMWIRNTKHGWITAEYGMLP 67
R +S+ ++K A GS LV++GDT +L T T + + + + G +P
Sbjct: 15 RPLSVEVGQLAKQANGSALVRYGDTVVLATVTASKAPKDLDFFPLTVNYEEKLYSVGKIP 74
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R GR G + R+I R +R + Q++I D
Sbjct: 75 GGFLRR------EGRPGENAILTSRLIDRPIRPLFPDGFRHDIQVMIYVMSNDPDCSAEM 128
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
A + G +A G +A ++ G + G +++ + D+
Sbjct: 129 AGMLGTSIA-------------LSISDVPFDGPIAGVTVGRVDGEFVINPTTAQLEKTDL 175
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
+ T + I V+ A +D + + I LI Q++++
Sbjct: 176 ELQVAGTST-AINMVEAGANEVP--EDVMLESILFGHEEIKRLIAFQQEIVE 224
>gi|19705029|ref|NP_602524.1| polynucleotide phosphorylase/polyadenylase [Fusobacterium nucleatum
subsp. nucleatum ATCC 25586]
gi|81485419|sp|Q8RIA1|PNP_FUSNN RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|19712941|gb|AAL93823.1| Polyribonucleotide nucleotidyltransferase [Fusobacterium nucleatum
subsp. nucleatum ATCC 25586]
Length = 703
Score = 153 bits (386), Expect = 2e-35, Method: Composition-based stats.
Identities = 46/243 (18%), Positives = 89/243 (36%), Gaps = 18/243 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR ++R + V GS L G+T L TL +E++ + +
Sbjct: 328 RVDGRTTTEIRPLDAQINVLPIPHGSALFTRGETQSLAITTLGTKEDEQLIDDLEKEYYK 387
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + + R+ G RAL V+ I + +
Sbjct: 388 KFYLHYNFPPYSVGEVGRMGSPGRRELGHGSL----AERALSYVIPTEEEFPYTIRVVSE 443
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A+I G ++L +++ + + +G + ++
Sbjct: 444 ITESNGSSSQASICGGSLSLMSAGVPIKEHVAGIAMGLIKEGEEFTVLTDIM-------- 495
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T SG I +Q + +++ LN A +++L +
Sbjct: 496 -GLEDHLGDMDFKVAGTKSG-ITALQMDIKITGITEEIMRIALNQAHQARIQILELMNNT 553
Query: 238 ISN 240
IS
Sbjct: 554 ISK 556
Score = 98.8 bits (244), Expect = 7e-19, Method: Composition-based stats.
Identities = 37/230 (16%), Positives = 78/230 (33%), Gaps = 27/230 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGML 66
R + ++ +S+ + G+ ++++GDT LL+TA + + + G
Sbjct: 18 RTLKVSTGKISRQSSGAIVIQYGDTVLLSTANRSKEARKGADFFPLTVDYIEKFYSSGKF 77
Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
P R GR + + R+I R +R + I+
Sbjct: 78 PGGFNKR------EGRPSTNATLVARLIDRPIRPMFPDGFNYDVHIVNTVLSYDEINIPD 131
Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
+ G+ +AL G VA++ G G I++ E +
Sbjct: 132 YLGVIGSSLALM-------------ISDIPFLGPVASVIVGYKNGEFILNPSPKELEESE 178
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+D T + V+ A+ ++ + A + I + + Q++
Sbjct: 179 LDLIVAGTKE-AVNMVEAGAKE--LDEETMLKAIMFAHENIKKICEFQEE 225
>gi|294624709|ref|ZP_06703376.1| polynucleotide phosphorylase [Xanthomonas fuscans subsp.
aurantifolii str. ICPB 11122]
gi|294665176|ref|ZP_06730476.1| polynucleotide phosphorylase [Xanthomonas fuscans subsp.
aurantifolii str. ICPB 10535]
gi|292600982|gb|EFF45052.1| polynucleotide phosphorylase [Xanthomonas fuscans subsp.
aurantifolii str. ICPB 11122]
gi|292605040|gb|EFF48391.1| polynucleotide phosphorylase [Xanthomonas fuscans subsp.
aurantifolii str. ICPB 10535]
Length = 704
Score = 153 bits (386), Expect = 2e-35, Method: Composition-based stats.
Identities = 44/242 (18%), Positives = 87/242 (35%), Gaps = 18/242 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
+R+ GR + +R IS T V GS L G+T + TL + +V +
Sbjct: 315 VRIDGRALDTVRPISATAGVLPRTHGSALFTRGETQAIVITTLGTARDGQVIDAVSGEYK 374
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P S G + A R+ G + R + +V+ I +
Sbjct: 375 ENFLFHYNFPPYSVGECGRFGAPKRREIGHGRL----AKRGVLAVMPTLEEFPYTIRVVS 430
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
++ +++G + A++ G+ +AL D ++ + V +G+ +
Sbjct: 431 EITESNGSSSMASVCGSSLALMDAGVPIKAPVAGIAMGLVKEGNDFVVLSD--------- 481
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T G + +Q + +++ L AK ++
Sbjct: 482 ILGDEDHLGDMDFKVAGTAEG-VSALQMDIKIEGITEEIMKQALQQAKAGRLHILGEMAH 540
Query: 237 VI 238
+
Sbjct: 541 AL 542
Score = 94.1 bits (232), Expect = 2e-17, Method: Composition-based stats.
Identities = 45/228 (19%), Positives = 79/228 (34%), Gaps = 27/228 (11%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTKHGWITAEYGMLPR 68
++L +++ A G+ +VKF DT LL TA + E + + G +P
Sbjct: 15 VTLETGEIARQAGGAVIVKFDDTVLLVTAVAAKSAREGQDFFPLTVDYQEKFYAGGRIPG 74
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
R GR + I R+I R +R + QII + D A
Sbjct: 75 GFFKR------EGRATEKETLISRLIDRPIRPLFPEDYKNEVQIIATVMSMNPDIDGDIA 128
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+ GA AL KG + A G G I++ E ++
Sbjct: 129 ALIGASAALSLAGT-------------PFKGPIGAAKVGYKNGEYILNPTVTELKDSQLE 175
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
T + ++ V+ +E S++ + + +I + +
Sbjct: 176 LVVAGTAN-AVLMVE--SEADLLSEEVMLGAVTFGHREMQKVINVINE 220
>gi|226227170|ref|YP_002761276.1| polyribonucleotide nucleotidyltransferase [Gemmatimonas aurantiaca
T-27]
gi|257096690|sp|C1A3Y1|PNP_GEMAT RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|226090361|dbj|BAH38806.1| polyribonucleotide nucleotidyltransferase [Gemmatimonas aurantiaca
T-27]
Length = 732
Score = 153 bits (386), Expect = 2e-35, Method: Composition-based stats.
Identities = 53/245 (21%), Positives = 89/245 (36%), Gaps = 20/245 (8%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW-- 58
+R+ GR+++++R IS+ V A GS L G T L ATL ++
Sbjct: 309 LRVDGRKKDEVRAISIDTSVLPRAHGSALFTRGQTQALVAATLGTAKDAQRLDSIKEPGE 368
Query: 59 ----ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIII 114
Y P STG S R+ G RAL+ V+ A I I
Sbjct: 369 VTRSFMLHYNFPPFSTGEVRPMRGTSRREIGHGNL----AERALQGVLPDFADFPYTIRI 424
Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPI 174
DV++++G + A++ G ++L D ++ + + +G AI
Sbjct: 425 VSDVLESNGSSSMASVCGGSLSLFDAGVPLKAAVAGVAMGLIKEGERYAILTD------- 477
Query: 175 VDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
+ ED D+D T G I +Q + L+ AK ++
Sbjct: 478 --ILGTEDHLGDMDFKVAGTKDG-ITSIQMDIKIEGLDIKIMEEALSQAKAGRLHILGEM 534
Query: 235 KDVIS 239
++
Sbjct: 535 DKALA 539
Score = 117 bits (293), Expect = 1e-24, Method: Composition-based stats.
Identities = 46/233 (19%), Positives = 92/233 (39%), Gaps = 26/233 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEK---VPMWIRNTKHGWITAEYGMLP 67
R + + ++K A GS +V+FG+T +L T+ E +P + ++ T G +P
Sbjct: 11 RPLVIETGRMAKQAAGSAVVQFGETMVLAAVTVSENQSPLPFFPLTVEYKEKTYAAGKIP 70
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R GR R+I R++R + Q+ I +
Sbjct: 71 GGFIKR------EGRPHDHEILAARIIDRSIRPLFPEGFKNEVQVFIYVISADQENDADV 124
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
A+ A AL+ G +A + G + G+ +++ + + D+
Sbjct: 125 LALVAASFALN-------------ASKIPFLGPIAGVRVGRVQGHWVLNPTFQQLGFSDL 171
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
+ + IV V+G + S++ L L+ D I +LI +Q+++++
Sbjct: 172 ELVVAGSKD-SIVMVEGGSLE--VSEEDVLESLRLSHDGIRELIGMQEELLAK 221
>gi|90412489|ref|ZP_01220492.1| putative polyribonucleotide nucleotidyltransferase [Photobacterium
profundum 3TCK]
gi|90326526|gb|EAS42932.1| putative polyribonucleotide nucleotidyltransferase [Photobacterium
profundum 3TCK]
Length = 707
Score = 153 bits (385), Expect = 2e-35, Method: Composition-based stats.
Identities = 47/244 (19%), Positives = 91/244 (37%), Gaps = 18/244 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR+++ +R + + V GS L G+T L TATL + ++ I K
Sbjct: 314 RIDGREKDMVRALDVRTGVLPRTHGSSLFTRGETQALVTATLGTQRDAQIIDSIMGEKKD 373
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P G + R+ G + R + +V+ + + +
Sbjct: 374 HFLLHYNFPPYCVGETGFVGSPKRREIGHGKL----AKRGIAAVMPSVEEFPYTVRVVSE 429
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ G +AL D ++ + V +G + +
Sbjct: 430 ITESNGSSSMASVCGTSLALMDAGVPIKASVAGIAMGLVKEGDDFVVLSD---------I 480
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D TD G I +Q + +++ LN AK ++ + D
Sbjct: 481 LGDEDHLGDMDFKVAGTDDG-ITALQMDIKIEGITKEIMQIALNQAKGARKHILSVMDDA 539
Query: 238 ISNE 241
I +
Sbjct: 540 IGSH 543
Score = 88.4 bits (217), Expect = 8e-16, Method: Composition-based stats.
Identities = 31/228 (13%), Positives = 66/228 (28%), Gaps = 27/228 (11%)
Query: 14 ISLTRRV-SKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKHGWITAEYGMLPR 68
++L V ++ A + + DT + + + E + + T G +P
Sbjct: 15 VTLETGVMARQATAAVMASMDDTSVFVSVVGKKAAVEGQDFFPLTVNYQERTYAAGKIPG 74
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
R GR R+I R +R + + Q+I + D
Sbjct: 75 GFFKR------EGRPSEGETLTARLIDRPIRPLFPSAFKNEVQVIATVVSVNPDVNPDMI 128
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
+ A G + A G + +++ E +D
Sbjct: 129 TMIATSAA-------------LAISGLPFNGPIGAARVGFVNDQFVLNPSNTELEESRLD 175
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
T ++ V+ +E S++ + D+ +I +
Sbjct: 176 LVVSGTKD-AVLMVE--SEADRLSEETMLQAVVYGHDQQQVVINAINE 220
>gi|114571589|ref|YP_758269.1| polynucleotide phosphorylase/polyadenylase [Maricaulis maris MCS10]
gi|122314882|sp|Q0AK62|PNP_MARMM RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|114342051|gb|ABI67331.1| Polyribonucleotide nucleotidyltransferase [Maricaulis maris MCS10]
Length = 710
Score = 153 bits (385), Expect = 2e-35, Method: Composition-based stats.
Identities = 45/243 (18%), Positives = 86/243 (35%), Gaps = 18/243 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +Q+R I + GS L G+T L ATL +E+ + T
Sbjct: 317 RIDGRSLDQVRSIVSEAGILPRTHGSALFTRGETQALVVATLGTGEDEQFIDALTGTYKE 376
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G R A R+ G + RA+++V+ I + +
Sbjct: 377 RFMLHYNFPPYSVGETSFRLAPGRREIGHGKL----AWRAVKAVLPTKEDFPYTIRLVSE 432
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A + GA +++ D + + + + A+ +
Sbjct: 433 ITESNGSSSMATVCGASLSMMDAGVPITRPVSGIAMGLIKDPEGIAVLSD---------I 483
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T G + +Q + A ++ L A +++
Sbjct: 484 LGDEDHLGDMDFKVAGTTEG-VTSLQMDIKIAGIDEEIMKTALAQASGGRLHILEEMGKA 542
Query: 238 ISN 240
+
Sbjct: 543 LGE 545
Score = 118 bits (294), Expect = 1e-24, Method: Composition-based stats.
Identities = 35/228 (15%), Positives = 75/228 (32%), Gaps = 27/228 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEK----VPMWIRNTKHGWITAEYGML 66
R +++ V++ A+G+ +V +G+T +L TA ++ V + + G +
Sbjct: 14 RPLTIETGRVARQADGAVMVSYGETTVLATAVGVKQAKPGVDFFPLTVNYQEKYFAAGKI 73
Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
P R GR + R+I R +R + Q+++ +
Sbjct: 74 PGGFFKR------EGRPTDKETLTSRLIDRPIRPLFVKGFKNEVQVMLTVLSHDLENDPD 127
Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
+ GA A G + A G G +++ E +
Sbjct: 128 IVGMIGASAA-------------LVLSGLPFMGPIGAARVGYKDGEYVINPPCDEMDDSE 174
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
+D T ++ V+ A+ S++ + +I +
Sbjct: 175 LDLVVAGTQD-AVMMVESEAKE--LSEEVMLGAVMAGHKAFQPVIDMI 219
>gi|297828842|ref|XP_002882303.1| hypothetical protein ARALYDRAFT_896385 [Arabidopsis lyrata subsp.
lyrata]
gi|297328143|gb|EFH58562.1| hypothetical protein ARALYDRAFT_896385 [Arabidopsis lyrata subsp.
lyrata]
Length = 922
Score = 153 bits (385), Expect = 2e-35, Method: Composition-based stats.
Identities = 42/237 (17%), Positives = 84/237 (35%), Gaps = 5/237 (2%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT-LEEKVPMWIRNTKHGWIT 60
R GR +++R I+ + A GS L G+T L T ++++ I N +
Sbjct: 447 RSDGRTLDEIRPINSRCGLLPRAHGSTLFTRGETQALAVVTLGDKQMAQRIDNLEGSDEY 506
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
+ + + V G R + RAL +++ I ++ VI+
Sbjct: 507 KRFYLQYTFPPSSVGEVGRIGAPSRREIGHGTLAERALETILPSDDDFPYTIRVESTVIE 566
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
++G + A++ G +AL D ++ + V G + D+
Sbjct: 567 SNGSSSMASVCGGCLALQDAGVPVKCSVAGIAMGMVWDTEEFG---GDGSPLILSDITGA 623
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED++ D+D + G + Q + + + L AK ++
Sbjct: 624 EDASGDMDFKVAGNEDG-VTAFQMDIKVGGITLEIMEKALIQAKAGRRHILAEMAKC 679
Score = 71.8 bits (174), Expect = 7e-11, Method: Composition-based stats.
Identities = 38/231 (16%), Positives = 73/231 (31%), Gaps = 20/231 (8%)
Query: 12 REISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRST 70
REI + + + A + V G+T + T+ L + E T
Sbjct: 97 REILVETGLMGRQASSAVTVTDGETIVYTSVCLADVPSEPSDFLPLYVHYQERFSAVGRT 156
Query: 71 GNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAI 130
GR I R+I R LR + QI+ A+
Sbjct: 157 S--GGFFKREGRTKDHEVLICRLIDRPLRPTMPKGFYNETQILSWVLSYDGLHAPDALAV 214
Query: 131 TGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDAN 190
T A +A+ +A + G++ G IV+ E +D
Sbjct: 215 TSAGIAVALSEVPNAKA-------------IAGVRVGLIGGEFIVNPTVKEMEESQLDLF 261
Query: 191 FVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
TD+ I+ ++G + ++ + + +D + +V++ +
Sbjct: 262 LAGTDT-AILTIEGYS--NFLPEEMLLEAVKVGQDAVQATCIAI-EVLAKK 308
>gi|269792330|ref|YP_003317234.1| Polyribonucleotide nucleotidyltransferase [Thermanaerovibrio
acidaminovorans DSM 6589]
gi|269099965|gb|ACZ18952.1| Polyribonucleotide nucleotidyltransferase [Thermanaerovibrio
acidaminovorans DSM 6589]
Length = 752
Score = 153 bits (385), Expect = 2e-35, Method: Composition-based stats.
Identities = 44/245 (17%), Positives = 89/245 (36%), Gaps = 20/245 (8%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL-----EEKVPMWIR-NTK 55
R GR +Q+R I+ V GS L G+T L TL ++++ ++ +
Sbjct: 312 RADGRAMDQLRPITCEVGVLPKVHGSALFTRGETQALAVTTLGMMGEDDQILDGLKIDEP 371
Query: 56 HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115
Y P S G R+ G RALR ++ + +
Sbjct: 372 AKRFLLHYNFPPYSVGEVRPMRGPGRREIGHGAL----AERALRPMLPSEDQFPYVVRVV 427
Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIV 175
D+++++G + A++ G +++ D ++ + V G +
Sbjct: 428 SDILESNGSSSMASVCGGSLSMMDAGVPIKKAVAGVAMGLVTDGSRV---------CILT 478
Query: 176 DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
D+ ED D+D T G + +Q + +++ L+ A+D ++ +
Sbjct: 479 DIQGLEDHYGDMDFKVAGTRDG-VTALQMDNKAGGITREILKRALDQARDGRMRILDIMD 537
Query: 236 DVISN 240
I +
Sbjct: 538 GAIRS 542
Score = 94.5 bits (233), Expect = 1e-17, Method: Composition-based stats.
Identities = 38/230 (16%), Positives = 73/230 (31%), Gaps = 27/230 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT----KHGWITAEYGML 66
R +S ++K A G+ +G+T +L T+ + EK + + G +
Sbjct: 12 RVLSFETGRMAKQANGAVYASYGETAVLVTSVMSEKPREGLDFFPLLVDYEERFYSAGKI 71
Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
P R GR + RM+ R++RS+ ++ +
Sbjct: 72 PGGFIKR------EGRPSETAILSGRMVDRSIRSLFPEHMRNDVHVVATVLSVDQHNPPN 125
Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
L + G + A+ G + G +V+ + +
Sbjct: 126 V-------------LAINAASAALAISDIPWDGPIGAVRIGCIDGQLLVNPTEPQMAEST 172
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+D G I V+ A S+D + LA I ++ +D
Sbjct: 173 LDLLVAG-HDGGITMVEAGANE--VSEDLLVDAMELAHQEIRRIVAFIRD 219
>gi|7413616|emb|CAB85703.1| putative polynucleotide phosphorylase [Arabidopsis thaliana]
Length = 922
Score = 153 bits (385), Expect = 2e-35, Method: Composition-based stats.
Identities = 42/237 (17%), Positives = 84/237 (35%), Gaps = 5/237 (2%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT-LEEKVPMWIRNTKHGWIT 60
R GR +++R I+ + A GS L G+T L T ++++ I N +
Sbjct: 447 RSDGRTLDEIRPINSRCGLLPRAHGSTLFTRGETQALAVVTLGDKQMAQRIDNLEGSDEY 506
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
+ + + V G R + RAL +++ I ++ VI+
Sbjct: 507 KRFYLQYTFPPSSVGEVGRIGAPSRREIGHGTLAERALETILPSDDDFPYTIRVESTVIE 566
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
++G + A++ G +AL D ++ + V G + D+
Sbjct: 567 SNGSSSMASVCGGCLALQDAGVPVKCSVAGIAMGMVWDTEEFG---GDGSPLILSDITGA 623
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED++ D+D + G + Q + + + L AK ++
Sbjct: 624 EDASGDMDFKVAGNEDG-VTAFQMDIKVGGITLEIMEKALIQAKAGRRHILAEMAKC 679
Score = 71.4 bits (173), Expect = 1e-10, Method: Composition-based stats.
Identities = 38/231 (16%), Positives = 73/231 (31%), Gaps = 20/231 (8%)
Query: 12 REISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRST 70
REI + + + A + V G+T + T+ L + E T
Sbjct: 97 REILVETGLMGRQASSAVTVTDGETIVYTSVCLADVPSEPSDFLPLYVHYQERFSAVGRT 156
Query: 71 GNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAI 130
GR I R+I R LR + QI+ A+
Sbjct: 157 S--GGFFKREGRTKDHEVLICRLIDRPLRPTMPKGFYNETQILSWVLSYDGLHAPDALAV 214
Query: 131 TGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDAN 190
T A +A+ +A + G++ G IV+ E +D
Sbjct: 215 TSAGIAVALSEVPNAKA-------------IAGVRVGLIGGEFIVNPTVKEMEESQLDLF 261
Query: 191 FVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
TD+ I+ ++G + ++ + + +D + +V++ +
Sbjct: 262 LAGTDT-AILTIEGYS--NFLPEEMLLQAVKVGQDAVQATCIAI-EVLAKK 308
>gi|6006870|gb|AAF00646.1|AC009540_23 putative polynucleotide phosphorylase [Arabidopsis thaliana]
gi|6091752|gb|AAF03462.1|AC009327_1 putative polynucleotide phosphorylase [Arabidopsis thaliana]
Length = 948
Score = 153 bits (385), Expect = 2e-35, Method: Composition-based stats.
Identities = 42/237 (17%), Positives = 84/237 (35%), Gaps = 5/237 (2%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT-LEEKVPMWIRNTKHGWIT 60
R GR +++R I+ + A GS L G+T L T ++++ I N +
Sbjct: 473 RSDGRTLDEIRPINSRCGLLPRAHGSTLFTRGETQALAVVTLGDKQMAQRIDNLEGSDEY 532
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
+ + + V G R + RAL +++ I ++ VI+
Sbjct: 533 KRFYLQYTFPPSSVGEVGRIGAPSRREIGHGTLAERALETILPSDDDFPYTIRVESTVIE 592
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
++G + A++ G +AL D ++ + V G + D+
Sbjct: 593 SNGSSSMASVCGGCLALQDAGVPVKCSVAGIAMGMVWDTEEFG---GDGSPLILSDITGA 649
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED++ D+D + G + Q + + + L AK ++
Sbjct: 650 EDASGDMDFKVAGNEDG-VTAFQMDIKVGGITLEIMEKALIQAKAGRRHILAEMAKC 705
Score = 71.4 bits (173), Expect = 1e-10, Method: Composition-based stats.
Identities = 38/231 (16%), Positives = 73/231 (31%), Gaps = 20/231 (8%)
Query: 12 REISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRST 70
REI + + + A + V G+T + T+ L + E T
Sbjct: 123 REILVETGLMGRQASSAVTVTDGETIVYTSVCLADVPSEPSDFLPLYVHYQERFSAVGRT 182
Query: 71 GNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAI 130
GR I R+I R LR + QI+ A+
Sbjct: 183 S--GGFFKREGRTKDHEVLICRLIDRPLRPTMPKGFYNETQILSWVLSYDGLHAPDALAV 240
Query: 131 TGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDAN 190
T A +A+ +A + G++ G IV+ E +D
Sbjct: 241 TSAGIAVALSEVPNAKA-------------IAGVRVGLIGGEFIVNPTVKEMEESQLDLF 287
Query: 191 FVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
TD+ I+ ++G + ++ + + +D + +V++ +
Sbjct: 288 LAGTDT-AILTIEGYS--NFLPEEMLLQAVKVGQDAVQATCIAI-EVLAKK 334
>gi|57238127|ref|YP_179377.1| polynucleotide phosphorylase/polyadenylase [Campylobacter jejuni
RM1221]
gi|81353435|sp|Q5HTK8|PNP_CAMJR RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|57166931|gb|AAW35710.1| polyribonucleotide nucleotidyltransferase [Campylobacter jejuni
RM1221]
gi|315058687|gb|ADT73016.1| Polyribonucleotide nucleotidyltransferase [Campylobacter jejuni
subsp. jejuni S3]
Length = 719
Score = 153 bits (385), Expect = 2e-35, Method: Composition-based stats.
Identities = 46/245 (18%), Positives = 84/245 (34%), Gaps = 22/245 (8%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWI------RNTK 55
R GR N++R IS+ + A GSCL G T L ATL + + +N
Sbjct: 336 RADGRSLNEVRPISIETNILPNAHGSCLFTRGQTQALVVATLGGENDAQMIDLLTEKNPI 395
Query: 56 HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115
Y S G +A R+ G RAL V I +
Sbjct: 396 SERFMVNYNFPGFSVGEASPIKAPGRRELGHGNL----AKRALYPSV--DENYPYVIRLV 449
Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIV 175
++++++G + A + G +AL + + + + A+ ++
Sbjct: 450 SEILESNGSSSMATVCGGSLALKAAGVPSLKLVAGVAMGLIFEDNKYAVLTDIM------ 503
Query: 176 DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
ED D+D + G + +Q + Q+ L AK+ ++ + +
Sbjct: 504 ---GLEDHDGDMDFKVAGSKDG-VTALQMDIKLGGIDQETLKQALYQAKEGRIHILNIME 559
Query: 236 DVISN 240
+
Sbjct: 560 EAAKE 564
Score = 84.1 bits (206), Expect = 2e-14, Method: Composition-based stats.
Identities = 40/250 (16%), Positives = 76/250 (30%), Gaps = 48/250 (19%)
Query: 20 VSKYAEGSCLVKFGDTHLLTTATLEE---KVPMWIRNTKHGWITAEYGMLPRSTGNRVKR 76
V+K A G+ L++ G + +L T EE + ++ G +P R
Sbjct: 19 VAKQAAGAVLMRQGKSVVLATVAREEKQVEEDFLPLTVQYIEKAYAAGKIPGGYVKR--- 75
Query: 77 EAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVA 136
+ R+I R+LR + QI++ + ++ A VA
Sbjct: 76 ---ETKPSDAETLTARIIDRSLRPLFPKGYAYPTQIVVMVLSADPKVDLQVMSLNAASVA 132
Query: 137 LHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDS 196
L+ +K V + G + G I++ + E +D
Sbjct: 133 LY-------------LSDIPMKAPVCGVRIGKIDGNFILNPNNEELQNSTLDLYVAGVKD 179
Query: 197 GHIVEVQGSA-------------------------ERATFSQDHFFAMLNLAKDRIADLI 231
++ ++ A S+D LNLA+ I +
Sbjct: 180 -ELLMIEMRALPDQKENEIFIEAPYADVLTQTTSQNMNELSEDEILEALNLAQKAILNGS 238
Query: 232 KLQKDVISNE 241
++ S
Sbjct: 239 NAYEEAFSKH 248
>gi|30678905|ref|NP_187021.2| RIF10 (resistant to inhibition with FSM 10); 3'-5'-exoribonuclease/
RNA binding / nucleic acid binding / polyribonucleotide
nucleotidyltransferase [Arabidopsis thaliana]
gi|25991185|gb|AAN76771.1|AF450480_1 polynucleotide phosphorylase [Arabidopsis thaliana]
gi|332640453|gb|AEE73974.1| polyribonucleotide nucleotidyltransferase [Arabidopsis thaliana]
Length = 922
Score = 153 bits (385), Expect = 2e-35, Method: Composition-based stats.
Identities = 42/237 (17%), Positives = 84/237 (35%), Gaps = 5/237 (2%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT-LEEKVPMWIRNTKHGWIT 60
R GR +++R I+ + A GS L G+T L T ++++ I N +
Sbjct: 447 RSDGRTLDEIRPINSRCGLLPRAHGSTLFTRGETQALAVVTLGDKQMAQRIDNLEGSDEY 506
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
+ + + V G R + RAL +++ I ++ VI+
Sbjct: 507 KRFYLQYTFPPSSVGEVGRIGAPSRREIGHGTLAERALETILPSDDDFPYTIRVESTVIE 566
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
++G + A++ G +AL D ++ + V G + D+
Sbjct: 567 SNGSSSMASVCGGCLALQDAGVPVKCSVAGIAMGMVWDTEEFG---GDGSPLILSDITGA 623
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED++ D+D + G + Q + + + L AK ++
Sbjct: 624 EDASGDMDFKVAGNEDG-VTAFQMDIKVGGITLEIMEKALIQAKAGRRHILAEMAKC 679
Score = 71.4 bits (173), Expect = 1e-10, Method: Composition-based stats.
Identities = 38/231 (16%), Positives = 73/231 (31%), Gaps = 20/231 (8%)
Query: 12 REISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRST 70
REI + + + A + V G+T + T+ L + E T
Sbjct: 97 REILVETGLMGRQASSAVTVTDGETIVYTSVCLADVPSEPSDFLPLYVHYQERFSAVGRT 156
Query: 71 GNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAI 130
GR I R+I R LR + QI+ A+
Sbjct: 157 S--GGFFKREGRTKDHEVLICRLIDRPLRPTMPKGFYNETQILSWVLSYDGLHAPDALAV 214
Query: 131 TGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDAN 190
T A +A+ +A + G++ G IV+ E +D
Sbjct: 215 TSAGIAVALSEVPNAKA-------------IAGVRVGLIGGEFIVNPTVKEMEESQLDLF 261
Query: 191 FVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
TD+ I+ ++G + ++ + + +D + +V++ +
Sbjct: 262 LAGTDT-AILTIEGYS--NFLPEEMLLQAVKVGQDAVQATCIAI-EVLAKK 308
>gi|313680573|ref|YP_004058312.1| polyribonucleotide nucleotidyltransferase [Oceanithermus profundus
DSM 14977]
gi|313153288|gb|ADR37139.1| polyribonucleotide nucleotidyltransferase [Oceanithermus profundus
DSM 14977]
Length = 721
Score = 153 bits (385), Expect = 2e-35, Method: Composition-based stats.
Identities = 46/243 (18%), Positives = 87/243 (35%), Gaps = 17/243 (6%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R GR ++R I + V + GS + G+T +L T TL +E++ + +
Sbjct: 326 RADGRGPAEIRPIWIEVDVLPRSHGSAIFTRGETQVLGTVTLGTGRDEQIIDDLGLDESE 385
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P STG + VS R+ G RAL+ ++ I + D
Sbjct: 386 DFLVHYNFPPYSTGEVKRLRGVSRREVGHGNL----AKRALKPMLPEKDAFPYTIRVVGD 441
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
V++++G + A + +AL D ++ + + + D+
Sbjct: 442 VLESNGSSSMATVCAGCLALMDAGVPIKKPVAGIAMGL--------VKPEEGEPVVLTDI 493
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED+ D+D T G + +Q + L A+ ++ + V
Sbjct: 494 LGMEDALGDMDFKVTGTRDG-VTALQMDIKVQGLDAAVMRRALEQARAARLAILDQMEQV 552
Query: 238 ISN 240
+
Sbjct: 553 LPE 555
Score = 112 bits (279), Expect = 5e-23, Method: Composition-based stats.
Identities = 41/235 (17%), Positives = 82/235 (34%), Gaps = 27/235 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATL---EEKVPMWIRNTKHGWITAEYGMLP 67
RE+ + ++ A GS V++G+T ++ TA +P + G +P
Sbjct: 21 RELVIETGKYARQASGSVWVRYGETIVMATAEGSKEPIDMPFLPLTVEFEERHYAIGKIP 80
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
S R GR G ++ RM R +R + Q+I+
Sbjct: 81 GSFMRR------EGRPGEKAILSARMTDRPIRPLFPKGFRHEVQVILTVLAADQQNPPDV 134
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
+ + G +A++ G + G +++ + D+
Sbjct: 135 LG-------------PLAASAALMLSDVPWDGPIASVRVGRVNGELVLNPTLQQLDESDL 181
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNEV 242
D + I+ V+ A+ S+D L+ A + LI LQ++ + ++
Sbjct: 182 DLIVAGSKD-AIIMVEAGAKE--VSEDLLVEALDFAHREMQPLIALQEE-MREKL 232
>gi|21243412|ref|NP_642994.1| polynucleotide phosphorylase/polyadenylase [Xanthomonas axonopodis
pv. citri str. 306]
gi|81801072|sp|Q8PJ59|PNP_XANAC RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|21108963|gb|AAM37530.1| polynucleotide phosphorylase [Xanthomonas axonopodis pv. citri str.
306]
Length = 704
Score = 153 bits (385), Expect = 2e-35, Method: Composition-based stats.
Identities = 44/242 (18%), Positives = 87/242 (35%), Gaps = 18/242 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
+R+ GR + +R IS T V GS L G+T + TL + +V +
Sbjct: 315 VRIDGRALDTVRPISATAGVLPRTHGSALFTRGETQAIVITTLGTARDGQVIDAVSGEYK 374
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P S G + A R+ G + R + +V+ I +
Sbjct: 375 ENFLFHYNFPPYSVGECGRFGAPKRREIGHGRL----AKRGVLAVMPTLEEFPYTIRVVS 430
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
++ +++G + A++ G+ +AL D ++ + V +G+ +
Sbjct: 431 EITESNGSSSMASVCGSSLALMDAGVPIKAPVAGIAMGLVKEGNDFVVLSD--------- 481
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T G + +Q + +++ L AK ++
Sbjct: 482 ILGDEDHLGDMDFKVAGTAEG-VSALQMDIKIEGITEEIMKQALQQAKAGRLHILGEMAH 540
Query: 237 VI 238
+
Sbjct: 541 AL 542
Score = 79.5 bits (194), Expect = 4e-13, Method: Composition-based stats.
Identities = 44/228 (19%), Positives = 78/228 (34%), Gaps = 27/228 (11%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTKHGWITAEYGMLPR 68
++L +++ A G+ +VK DT LL TA + E + + G +P
Sbjct: 15 VTLETGEIARQAGGAVIVKVDDTVLLVTAVAAKSAREGQDFFPLTVDYQEKFYAGGRIPG 74
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
R GR + I R+I R +R + QII + D A
Sbjct: 75 GFFKR------EGRATEKETLISRLIDRPIRPLFPEDYKNEVQIIATVMSMNPDIDGDIA 128
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+ GA AL KG + A G G I++ E ++
Sbjct: 129 ALIGASAALSLAGT-------------PFKGPIGAAKVGYKNGEYILNPTVTELKDSQLE 175
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
T + ++ V+ AE + ++ + + +I + +
Sbjct: 176 LVVAGTAN-AVLMVESEAELLS--EEVMLGAVTFGHREMQKVINVINE 220
>gi|121612552|ref|YP_001000929.1| polynucleotide phosphorylase/polyadenylase [Campylobacter jejuni
subsp. jejuni 81-176]
gi|167005840|ref|ZP_02271598.1| polynucleotide phosphorylase/polyadenylase [Campylobacter jejuni
subsp. jejuni 81-176]
gi|187610251|sp|A1W0N8|PNP_CAMJJ RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|87249933|gb|EAQ72892.1| polyribonucleotide nucleotidyltransferase [Campylobacter jejuni
subsp. jejuni 81-176]
Length = 719
Score = 153 bits (385), Expect = 2e-35, Method: Composition-based stats.
Identities = 46/245 (18%), Positives = 84/245 (34%), Gaps = 22/245 (8%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWI------RNTK 55
R GR N++R IS+ + A GSCL G T L ATL + + +N
Sbjct: 336 RADGRSLNEVRPISIETNILPNAHGSCLFTRGQTQALVVATLGGENDAQMIDLLTEKNPI 395
Query: 56 HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115
Y S G +A R+ G RAL V I +
Sbjct: 396 SERFMVNYNFPGFSVGEASPIKAPGRRELGHGNL----AKRALYPSV--DENYPYIIRLV 449
Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIV 175
++++++G + A + G +AL + + + + A+ ++
Sbjct: 450 SEILESNGSSSMATVCGGSLALKAAGVPSLKLVAGVAMGLIFEDNKHAVLTDIM------ 503
Query: 176 DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
ED D+D + G + +Q + Q+ L AK+ ++ + +
Sbjct: 504 ---GLEDHDGDMDFKVAGSKDG-VTALQMDIKLGGIDQETLKQALYQAKEGRIHILNIME 559
Query: 236 DVISN 240
+
Sbjct: 560 EAAKE 564
Score = 83.0 bits (203), Expect = 3e-14, Method: Composition-based stats.
Identities = 40/250 (16%), Positives = 76/250 (30%), Gaps = 48/250 (19%)
Query: 20 VSKYAEGSCLVKFGDTHLLTTATLEE---KVPMWIRNTKHGWITAEYGMLPRSTGNRVKR 76
V+K A G+ L++ G + +L T EE + ++ G +P R
Sbjct: 19 VAKQAAGAVLMRQGKSIVLATVAREEKQVEEDFLPLTVQYIEKAYAAGKIPGGYVKR--- 75
Query: 77 EAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVA 136
+ R+I R+LR + QI++ + ++ A VA
Sbjct: 76 ---ETKPSDAETLTARIIDRSLRPLFPKGYAYPTQIVVMVLSADPKVDLQVMSLNAASVA 132
Query: 137 LHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDS 196
L+ +K V + G + G I++ + E +D
Sbjct: 133 LY-------------LSDIPMKAPVCGVRIGKIDGNFILNPNNEELQNSTLDLYVAGVKD 179
Query: 197 GHIVEVQGSA-------------------------ERATFSQDHFFAMLNLAKDRIADLI 231
++ ++ A S+D LNLA+ I +
Sbjct: 180 -ELLMIEMRALPDQKENEIFIEAPYADVLTQTTSQNMNELSEDEILEALNLAQKAILNGS 238
Query: 232 KLQKDVISNE 241
++ S
Sbjct: 239 NAYEEAFSKH 248
>gi|86152881|ref|ZP_01071086.1| polyribonucleotide nucleotidyltransferase [Campylobacter jejuni
subsp. jejuni HB93-13]
gi|85843766|gb|EAQ60976.1| polyribonucleotide nucleotidyltransferase [Campylobacter jejuni
subsp. jejuni HB93-13]
Length = 719
Score = 153 bits (385), Expect = 2e-35, Method: Composition-based stats.
Identities = 46/245 (18%), Positives = 84/245 (34%), Gaps = 22/245 (8%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWI------RNTK 55
R GR N++R IS+ + A GSCL G T L ATL + + +N
Sbjct: 336 RADGRSLNEVRPISIETNILPNAHGSCLFTRGQTQALVVATLGGENDAQMIDLLTEKNPI 395
Query: 56 HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115
Y S G +A R+ G RAL V I +
Sbjct: 396 SERFMVNYNFPGFSVGEASPIKAPGRRELGHGNL----AKRALYPSV--DENYPYIIRLV 449
Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIV 175
++++++G + A + G +AL + + + + A+ ++
Sbjct: 450 SEILESNGSSSMATVCGGSLALKAAGVPSLKLVAGVAMGLIFEDNKHAVLTDIM------ 503
Query: 176 DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
ED D+D + G + +Q + Q+ L AK+ ++ + +
Sbjct: 504 ---GLEDHDGDMDFKVAGSKDG-VTALQMDIKLGGIDQETLKQALYQAKEGRIHILNIME 559
Query: 236 DVISN 240
+
Sbjct: 560 EAAKE 564
Score = 82.2 bits (201), Expect = 6e-14, Method: Composition-based stats.
Identities = 41/250 (16%), Positives = 77/250 (30%), Gaps = 48/250 (19%)
Query: 20 VSKYAEGSCLVKFGDTHLLTTATLEE---KVPMWIRNTKHGWITAEYGMLPRSTGNRVKR 76
V+K A G+ L++ G + +L T EE + ++ G +P R
Sbjct: 19 VAKQAAGAVLMRQGKSVVLATVAREEKQVEEDFLPLTVQYIEKAYAAGKIPGGYVKR--- 75
Query: 77 EAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVA 136
+ R+I R+LR + QI++ + ++ A VA
Sbjct: 76 ---ETKPSDAETLTARIIDRSLRPLFPKGYAYPTQIVVMVLSADPKVDLQVMSLNAASVA 132
Query: 137 LHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDS 196
L+ +K V + G + G I++ + GE +D
Sbjct: 133 LY-------------LSDIPMKAPVCGVRIGKIDGNFILNPNNGELQNSTLDLYVAGVKD 179
Query: 197 GHIVEVQGSA-------------------------ERATFSQDHFFAMLNLAKDRIADLI 231
++ ++ A S+D LNLA+ I +
Sbjct: 180 -ELLMIEMRALPDQKENEIFIEAPYADVLTQTTSQNMNELSEDEILEALNLAQKAILNGS 238
Query: 232 KLQKDVISNE 241
++ S
Sbjct: 239 NAYEEAFSKH 248
>gi|258543487|ref|YP_003188920.1| polynucleotide phosphorylase/polyadenylase [Acetobacter
pasteurianus IFO 3283-01]
gi|256634565|dbj|BAI00541.1| polyribonucleotide nucleotidyltransferase RNA binding S1
[Acetobacter pasteurianus IFO 3283-01]
gi|256637623|dbj|BAI03592.1| polyribonucleotide nucleotidyltransferase RNA binding S1
[Acetobacter pasteurianus IFO 3283-03]
gi|256640675|dbj|BAI06637.1| polyribonucleotide nucleotidyltransferase RNA binding S1
[Acetobacter pasteurianus IFO 3283-07]
gi|256643732|dbj|BAI09687.1| polyribonucleotide nucleotidyltransferase RNA binding S1
[Acetobacter pasteurianus IFO 3283-22]
gi|256646787|dbj|BAI12735.1| polyribonucleotide nucleotidyltransferase RNA binding S1
[Acetobacter pasteurianus IFO 3283-26]
gi|256649840|dbj|BAI15781.1| polyribonucleotide nucleotidyltransferase RNA binding S1
[Acetobacter pasteurianus IFO 3283-32]
gi|256652828|dbj|BAI18762.1| polyribonucleotide nucleotidyltransferase RNA binding S1
[Acetobacter pasteurianus IFO 3283-01-42C]
gi|256655884|dbj|BAI21811.1| polyribonucleotide nucleotidyltransferase RNA binding S1
[Acetobacter pasteurianus IFO 3283-12]
Length = 716
Score = 153 bits (385), Expect = 2e-35, Method: Composition-based stats.
Identities = 41/243 (16%), Positives = 85/243 (34%), Gaps = 18/243 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +R I + GS L G+T L TL +E+V +
Sbjct: 314 RIDGRDLVTVRPIVPEVGILPRVHGSSLFTRGETQALVVTTLGTGQDEQVIDALEGEYRT 373
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + + R+ G + RA+ ++ + + +
Sbjct: 374 NFMLHYNFPPFSVGECGRIGSPGRREIGHGKL----AWRAIHPLMPSRKEFPYTVRVVSE 429
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A + G +AL D ++ + + +G A+ +
Sbjct: 430 ITESNGSSSMATVCGGSLALMDAGVPLKRPVAGIAMGLIKEGDDFAVLSD---------I 480
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T+ G + +Q + + + + L A+D ++
Sbjct: 481 LGDEDHLGDMDFKVAGTEQG-VTALQMDIKITSITPEIMKIALGQARDGRMHILGEMSKA 539
Query: 238 ISN 240
++
Sbjct: 540 LTE 542
Score = 104 bits (258), Expect = 1e-20, Method: Composition-based stats.
Identities = 38/235 (16%), Positives = 72/235 (30%), Gaps = 28/235 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----HGWITAEYGML 66
R + L V++ A+G+ +V +G+T +L TA + V + G +
Sbjct: 14 RPLILETGKVARQADGAVMVTYGETVVLCTAVGAKDVKPGQDFFPLTVNYQEKAYAAGKI 73
Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
P R GR + R+I R LR + Q+I +
Sbjct: 74 PGGFFKR------EGRPSENETLVSRLIDRPLRPLFPEGFRNEVQVIATVLTHDMENDPS 127
Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
A+ G A G V A G G I++ + D
Sbjct: 128 IPALIGCSAA-------------LTLSGIPFFGPVGAARVGFKDGAFILNPTQEQIKESD 174
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
++ T G ++ V+ A + ++ + ++ ++
Sbjct: 175 LELVVAGTAEG-VLMVESEASELS--EEVMLDAVTFGHTAFQPVLDAI-ISLAEH 225
>gi|190575258|ref|YP_001973103.1| polynucleotide phosphorylase/polyadenylase [Stenotrophomonas
maltophilia K279a]
gi|226702693|sp|B2FN86|PNP_STRMK RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|190013180|emb|CAQ46813.1| putative polyribonucleotide phosphorylase [Stenotrophomonas
maltophilia K279a]
Length = 702
Score = 153 bits (385), Expect = 2e-35, Method: Composition-based stats.
Identities = 43/238 (18%), Positives = 85/238 (35%), Gaps = 18/238 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
+R+ GR + +R I++ V GS L G+T + T TL + +V +
Sbjct: 315 VRIDGRALDTVRPIAVKTGVLPRTHGSSLFTRGETQAIVTITLGTARDGQVIDAVAGEYK 374
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P S G + R+ G + R + +V+ I +
Sbjct: 375 ENFLFHYNFPPFSVGECGRMMGPKRREIGHGRL----AKRGVLAVMPSLEAFPYTIRVVS 430
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
++ +++G + A++ G+ +AL D ++ + V +G +
Sbjct: 431 EITESNGSSSMASVCGSSLALMDAGVPVKAPVAGIAMGLVKEGERFVVLSD--------- 481
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
+ ED D+D T G I +Q + +++ L AK ++
Sbjct: 482 ILGDEDHLGDMDFKVAGTAEG-ISALQMDIKIEGITEEIMKQALQQAKAGRLHILGEM 538
Score = 87.2 bits (214), Expect = 2e-15, Method: Composition-based stats.
Identities = 43/228 (18%), Positives = 76/228 (33%), Gaps = 27/228 (11%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTKHGWITAEYGMLPR 68
++L V++ A G+ +VK DT LL TA + E + + G +P
Sbjct: 15 VTLETGEVARQASGAVIVKMDDTVLLVTAVAAKSAREGQDFFPLTVDYQEKFYAGGRIPG 74
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
R GR + I R+I R +R + QII + D
Sbjct: 75 GFFKR------EGRATEKETLISRLIDRPIRPLFPEDYKNDVQIIATVMSLNPDVDGDIP 128
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+ GA AL + A G G I++ E + ++
Sbjct: 129 ALIGASAALALAGTPFMG-------------PIGAAKVGYKNGEYILNPTVSELADSQLE 175
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
T + ++ V+ +E A S++ + + +I +
Sbjct: 176 LVVAGTSN-AVLMVE--SEAALLSEEVMLGAVTFGHREMQKVINAINE 220
>gi|99079919|ref|YP_612073.1| polynucleotide phosphorylase/polyadenylase [Ruegeria sp. TM1040]
gi|123077834|sp|Q1GKK5|PNP_SILST RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|99036199|gb|ABF62811.1| polyribonucleotide nucleotidyltransferase [Ruegeria sp. TM1040]
Length = 711
Score = 153 bits (385), Expect = 2e-35, Method: Composition-based stats.
Identities = 45/243 (18%), Positives = 90/243 (37%), Gaps = 17/243 (6%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +Q+R I + GS L G+T L TL +E+ +
Sbjct: 318 RIDGRALDQVRAIECQTGLLPRTHGSALFTRGETQGLVVTTLGTGDDEQFIDALHGNFKS 377
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + + R+ G + RAL++V+ I + +
Sbjct: 378 NFLLHYNFPPYSVGEVGRVGSPGRREIGHGKL----AWRALQAVLPAPTDFPYTIRVVSE 433
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ G +++ D ++ + VL+ + + D+
Sbjct: 434 ITESNGSSSMASVCGGSLSMMDAGVPLKAPVAGVAMGLVLEEDGS--------YGILTDI 485
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T++G I +Q + A + + L AK ++
Sbjct: 486 LGDEDHLGDMDFKVAGTEAG-ITSLQMDIKVAGITPEIMKNALAQAKAGRLHILGEMAKS 544
Query: 238 ISN 240
++
Sbjct: 545 LTE 547
Score = 101 bits (250), Expect = 1e-19, Method: Composition-based stats.
Identities = 31/232 (13%), Positives = 66/232 (28%), Gaps = 33/232 (14%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT----KHGWITAEYGMLPR 68
++L V++ A+G+ + G+T ++ T + + G +P
Sbjct: 16 LTLETGKVARQADGTVIATLGETSVMANVTYAREQKPGQDFFPLTVHYQEKYYAAGKIPG 75
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
R R + R+I R +R + ++
Sbjct: 76 GFFKR------EARPTEKETLTARLIDRPIRPLFVPGFKNEVLVMCTVLSHDLVNDPDIV 129
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDST---- 184
A+ A A G +A G G I++ +
Sbjct: 130 AMIAASAA-------------LTISGVPFMGPIAGARVGYEDGEYILNPTVDDMQDLRLN 176
Query: 185 --IDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
+D T ++ V+ A +++ + A ++I +I L
Sbjct: 177 PEQRLDLVVAGTKD-AVMMVESEAYE--LTEEEMLGAVTFAHEQIQPVIDLI 225
>gi|302342332|ref|YP_003806861.1| polyribonucleotide nucleotidyltransferase [Desulfarculus baarsii
DSM 2075]
gi|301638945|gb|ADK84267.1| polyribonucleotide nucleotidyltransferase [Desulfarculus baarsii
DSM 2075]
Length = 749
Score = 153 bits (385), Expect = 2e-35, Method: Composition-based stats.
Identities = 44/244 (18%), Positives = 87/244 (35%), Gaps = 19/244 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL-----EEKVPMWIRNTKH 56
R+ GR ++R I V GS L G+T L ATL E+++
Sbjct: 317 RIDGRTVTEVRPIDCEVGVLPRTHGSALFTRGETQALVVATLGTAGDEQRIESVTEGDVF 376
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P S G + + R+ G RA+ ++ +
Sbjct: 377 RHFLLHYNFPPYSVGEAKRLGGPNRRELGHGAL----ARRAVEKILPAKEDFPYCLRCVS 432
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
++ +++G + A++ G+ +AL D + + + + +G + ++
Sbjct: 433 EITESNGSSSMASVCGSSMALMDAGVPVSEAVAGVAMGLIKEGDKMVVLTDIM------- 485
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
ED D+D + G I VQ + + S++ L A++ ++ +
Sbjct: 486 --GDEDHLGDMDFKVAGSARG-ISAVQMDIKISGISKEIMGQALKQAREGRLHILGEMQK 542
Query: 237 VISN 240
I N
Sbjct: 543 AIDN 546
Score = 108 bits (268), Expect = 1e-21, Method: Composition-based stats.
Identities = 39/230 (16%), Positives = 81/230 (35%), Gaps = 26/230 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKHGWITAEYGML 66
RE + ++K A G+ V++G+T +L T + E + + ++ G +
Sbjct: 12 REFVIETGKIAKQASGAVWVQYGETVVLVTVVGDTNVREGIDFLPLTVDYQEMSYAAGRI 71
Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
P + R GR + R+I R +R ++ QII +
Sbjct: 72 PGNFFRR-----EIGRPSEKETLTSRLIDRPVRPRMNKGWTFETQIIATVMSVDRVNEPD 126
Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
A+TGA AL G +A + G + G +++ + D
Sbjct: 127 VMAMTGASAALM-------------VSDVPFDGPIAGVRVGRVDGQLVLNPTAEQIEKSD 173
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
++ + + V+G + +D + + L+ +Q++
Sbjct: 174 LELLVAGSRD-AVCMVEGGSLM--LGEDEILEAIWFGHAGLQPLLDIQEE 220
>gi|254521573|ref|ZP_05133628.1| 3' exoribonuclease family, domain 2, protein [Stenotrophomonas sp.
SKA14]
gi|219719164|gb|EED37689.1| 3' exoribonuclease family, domain 2, protein [Stenotrophomonas sp.
SKA14]
Length = 702
Score = 153 bits (385), Expect = 2e-35, Method: Composition-based stats.
Identities = 43/238 (18%), Positives = 85/238 (35%), Gaps = 18/238 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
+R+ GR + +R I++ V GS L G+T + T TL + +V +
Sbjct: 315 VRIDGRALDTVRPIAVKTGVLPRTHGSSLFTRGETQAIVTITLGTARDGQVIDAVAGEYK 374
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P S G + R+ G + R + +V+ I +
Sbjct: 375 ENFLFHYNFPPFSVGECGRMMGPKRREIGHGRL----AKRGVLAVMPSLEAFPYTIRVVS 430
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
++ +++G + A++ G+ +AL D ++ + V +G +
Sbjct: 431 EITESNGSSSMASVCGSSLALMDAGVPVKAPVAGIAMGLVKEGERFVVLSD--------- 481
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
+ ED D+D T G I +Q + +++ L AK ++
Sbjct: 482 ILGDEDHLGDMDFKVAGTAEG-ISALQMDIKIEGITEEIMKQALQQAKAGRLHILGEM 538
Score = 88.7 bits (218), Expect = 6e-16, Method: Composition-based stats.
Identities = 43/228 (18%), Positives = 76/228 (33%), Gaps = 27/228 (11%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTKHGWITAEYGMLPR 68
++L V++ A G+ +VK DT LL TA + E + + G +P
Sbjct: 15 VTLETGEVARQASGAVIVKMDDTVLLVTAVAAKSAREGQDFFPLTVDYQEKFYAGGRIPG 74
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
R GR + I R+I R +R + QII + D
Sbjct: 75 GFFKR------EGRATEKETLISRLIDRPIRPLFPEDYKNEVQIIATVMSLNPDVDGDIP 128
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+ GA AL + A G G I++ E + ++
Sbjct: 129 ALIGASAALALAGTPFMG-------------PIGAAKVGYKNGEYILNPTVSELADSQLE 175
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
T + ++ V+ +E A S++ + + +I +
Sbjct: 176 LVVAGTSN-AVLMVE--SEAALLSEEVMLGAVTFGHREMQKVINAINE 220
>gi|157415517|ref|YP_001482773.1| polynucleotide phosphorylase/polyadenylase [Campylobacter jejuni
subsp. jejuni 81116]
gi|187610249|sp|A8FMV9|PNP_CAMJ8 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|157386481|gb|ABV52796.1| polyribonucleotide nucleotidyltransferase [Campylobacter jejuni
subsp. jejuni 81116]
gi|307748158|gb|ADN91428.1| Polyribonucleotide nucleotidyltransferase [Campylobacter jejuni
subsp. jejuni M1]
Length = 719
Score = 153 bits (385), Expect = 2e-35, Method: Composition-based stats.
Identities = 46/245 (18%), Positives = 84/245 (34%), Gaps = 22/245 (8%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWI------RNTK 55
R GR N++R IS+ + A GSCL G T L ATL + + +N
Sbjct: 336 RADGRSLNEVRPISIETNILPNAHGSCLFTRGQTQALVVATLGGENDAQMIDLLTEKNPI 395
Query: 56 HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115
Y S G +A R+ G RAL V I +
Sbjct: 396 SERFMVNYNFPGFSVGEASPIKAPGRRELGHGNL----AKRALYPSV--DENYPYVIRLV 449
Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIV 175
++++++G + A + G +AL + + + + A+ ++
Sbjct: 450 SEILESNGSSSMATVCGGSLALKAAGVPSLKLVAGVAMGLIFEDNKHAVLTDIM------ 503
Query: 176 DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
ED D+D + G + +Q + Q+ L AK+ ++ + +
Sbjct: 504 ---GLEDHDGDMDFKVAGSKDG-VTALQMDIKLGGIDQETLKQALYQAKEGRIHILNIME 559
Query: 236 DVISN 240
+
Sbjct: 560 EAAKE 564
Score = 84.1 bits (206), Expect = 1e-14, Method: Composition-based stats.
Identities = 40/250 (16%), Positives = 76/250 (30%), Gaps = 48/250 (19%)
Query: 20 VSKYAEGSCLVKFGDTHLLTTATLEE---KVPMWIRNTKHGWITAEYGMLPRSTGNRVKR 76
V+K A G+ L++ G + +L T EE + ++ G +P R
Sbjct: 19 VAKQAAGAVLMRQGKSVVLATVAREEKQVEEDFLPLTVQYIEKAYAAGKIPGGYVKR--- 75
Query: 77 EAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVA 136
+ R+I R+LR + QI++ + ++ A VA
Sbjct: 76 ---ETKPSDAETLTARIIDRSLRPLFPKGYTYPTQIVVMVLSADPKVDLQVMSLNAASVA 132
Query: 137 LHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDS 196
L+ +K V + G + G I++ + E +D
Sbjct: 133 LY-------------LSDIPMKAPVCGVRIGKIDGNFILNPNNEELQNSTLDLYVAGVKD 179
Query: 197 GHIVEVQGSA-------------------------ERATFSQDHFFAMLNLAKDRIADLI 231
++ ++ A S+D LNLA+ I +
Sbjct: 180 -ELLMIEMRALPDQKENEIFIEAPYADVLTQTTSQNMNELSEDEILEALNLAQKAILNGS 238
Query: 232 KLQKDVISNE 241
++ S
Sbjct: 239 NAYEEAFSKH 248
>gi|313633394|gb|EFS00232.1| polyribonucleotide nucleotidyltransferase [Listeria seeligeri FSL
N1-067]
Length = 723
Score = 153 bits (385), Expect = 3e-35, Method: Composition-based stats.
Identities = 51/243 (20%), Positives = 89/243 (36%), Gaps = 18/243 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
+R GR+ N++R +S + GS L G T L+ TL E ++ + ++
Sbjct: 316 IRPDGRKVNEIRPLSSEVGLLPRVHGSGLFTRGQTQALSVCTLAPLREHQIIDGLGTEEY 375
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y S G R A R+ G RAL+ V+ I +
Sbjct: 376 KRFMHHYNFPQFSVGETGPRRAPGRREIGHGALG----ERALQYVIPSEEDFPYTIRLVS 431
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V++++G + A+I G+ +A+ D ++ + V G I
Sbjct: 432 EVLESNGSSSQASICGSTLAMLDAGVPIKAPVAGIAMGLVKLGDDYTILSD--------- 482
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T G I +Q + S+ L AK+ +++
Sbjct: 483 IQGMEDHFGDMDFKVAGTKDG-ITALQMDIKIDGLSRQILEEALTQAKEGRLHILEHLTS 541
Query: 237 VIS 239
IS
Sbjct: 542 TIS 544
Score = 109 bits (273), Expect = 3e-22, Method: Composition-based stats.
Identities = 44/229 (19%), Positives = 81/229 (35%), Gaps = 26/229 (11%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKV---PMWIRNTKHGWITAEYGMLPRS 69
+S+ ++K A G+ L+++GDT +LT A +K + + G +P
Sbjct: 16 LSVEVGQLAKQASGAALIRYGDTVVLTAAVGSKKPRPGDFFPLTVNYEEKMYSVGKVPGG 75
Query: 70 TGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAA 129
R GR R+ R+I R +R + QI + D AA
Sbjct: 76 FLKR------EGRPSDRATLTARLIDRPIRPLFAEGFRNEVQITSTVFSVDQDCSPEMAA 129
Query: 130 ITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDA 189
+ G+ VA G +A + G + G +++ + D+
Sbjct: 130 MLGSSVA-------------LVISDIPFDGPIAGVDVGRIDGKYVINPTIEQAEKSDISL 176
Query: 190 NFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
T I V+ A+ S++ + + I L + Q+ +I
Sbjct: 177 TVAGTHD-AINMVEAGAKE--VSEEAMLEAIMFGHEEIKRLCEFQQQII 222
>gi|260887793|ref|ZP_05899056.1| polyribonucleotide nucleotidyltransferase [Selenomonas sputigena
ATCC 35185]
gi|330838689|ref|YP_004413269.1| polyribonucleotide nucleotidyltransferase [Selenomonas sputigena
ATCC 35185]
gi|260862469|gb|EEX76969.1| polyribonucleotide nucleotidyltransferase [Selenomonas sputigena
ATCC 35185]
gi|329746453|gb|AEB99809.1| polyribonucleotide nucleotidyltransferase [Selenomonas sputigena
ATCC 35185]
Length = 689
Score = 153 bits (385), Expect = 3e-35, Method: Composition-based stats.
Identities = 45/242 (18%), Positives = 93/242 (38%), Gaps = 18/242 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56
+R GR +++R +S + GS L G T +LT T +E++ + +
Sbjct: 310 IRPDGRALDEVRPVSCEVGLLPRTHGSGLFTRGQTQVLTITTLGSVGDEQIIDGLGPEQS 369
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
+Y S G R+ G RAL ++ I +
Sbjct: 370 KHYIHQYNFPGYSVGEARPARGPGRREIGHGAL----AERALLPMIPSLDEFPYTIRLVS 425
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V++++G + ++ G+ ++L + ++ + + V G + D
Sbjct: 426 EVLESNGSSSMGSVCGSTLSLMNAGVPIKRPVSGVAMGLVKDGD---------HYTILTD 476
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED+ D+D T+ G + +Q + A ++D + L+ AK A +++
Sbjct: 477 IQGMEDALGDMDFKVAGTEKG-VTAIQMDIKIAGITRDILLSALSQAKRGRAFILEKMLA 535
Query: 237 VI 238
VI
Sbjct: 536 VI 537
Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats.
Identities = 41/231 (17%), Positives = 80/231 (34%), Gaps = 27/231 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKHGWITAEYGML 66
R + + + ++K A GS LV++GDT +L AT E + + G +
Sbjct: 11 RPLIIEQGKMAKQANGSVLVRYGDTAVLVAATASAEPREGIDFFPLTVDFEEKMYAAGKI 70
Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
P R GR + R+I R +R + QII + D
Sbjct: 71 PGGFIKR------EGRPSESAILCSRLIDRPIRPLFPEGFRNDVQIIATVLCVDQDNAPE 124
Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
A + GA AL G +A + G + G +++ + + D
Sbjct: 125 IAGMIGASCALC-------------VSDIPFAGPIAGVKVGRVDGELVINPTEAQRAVSD 171
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
++ ++ V+ A ++ + I +++ Q+++
Sbjct: 172 LNLTVAG-SHDAVMMVEAGANE--LPEEVILEAILFGHKEIQRIVEFQQEI 219
>gi|117926996|ref|YP_867613.1| polynucleotide phosphorylase/polyadenylase [Magnetococcus sp. MC-1]
gi|187610282|sp|A0LE14|PNP_MAGSM RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|117610752|gb|ABK46207.1| Polyribonucleotide nucleotidyltransferase [Magnetococcus sp. MC-1]
Length = 701
Score = 153 bits (385), Expect = 3e-35, Method: Composition-based stats.
Identities = 42/244 (17%), Positives = 87/244 (35%), Gaps = 18/244 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +R I+ + G+ L G+T + T TL +E++ +
Sbjct: 318 RVDGRGLTDIRPIACEVSILPRVHGTALFTRGETQAIATVTLGTSRDEQIVETLSGEYRD 377
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P G + A R+ G + RAL ++V + + + I +
Sbjct: 378 RFYLNYTFPPYCVGETGRMGAPGRREIGHGKL----ATRALTAIVPSAEVFPYTLRITSE 433
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A + GA +A+ D ++ + V +G A+ +
Sbjct: 434 ITESNGSSSMATVCGAVLAMQDAGVPIKAPVAGIAMGLVKEGDAYAVLSD---------I 484
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D G I +Q + +++ L A+ ++
Sbjct: 485 LGDEDHLGDMDFKVAGNADG-ITALQMDIKITGITREIMAKALEQARAGRLHILGEMGKA 543
Query: 238 ISNE 241
++
Sbjct: 544 MTTH 547
Score = 112 bits (279), Expect = 5e-23, Method: Composition-based stats.
Identities = 41/232 (17%), Positives = 80/232 (34%), Gaps = 27/232 (11%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT----KHGWITAEYGMLPR 68
I+L V++ A G+ +V +GDT +L TA E + + G +P
Sbjct: 16 ITLETGRVARQANGAVMVTYGDTVVLVTAVAETSMRAGQDFFPLSVHYQEKFWAAGKIPG 75
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
R R R R+I R +R + + Q++ D + A
Sbjct: 76 GFIKR------ETRPSEREVLTSRLIDRPIRPLFPKGFMNETQVVAQVLSYDPDYPSDIA 129
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+ G A +G + G + G P+++ + + +D
Sbjct: 130 ALIGCSAA-------------LALSGVPFEGPIGGARVGFIDGKPVLNPTVDQLAASRLD 176
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
T S + V+ +E S+D + A + +I +++++
Sbjct: 177 LVVAGTRS-AVTMVE--SEVDFLSEDEMLDCVMFAHESFQPVITAIEELVAE 225
>gi|313638085|gb|EFS03354.1| polyribonucleotide nucleotidyltransferase [Listeria seeligeri FSL
S4-171]
Length = 723
Score = 153 bits (385), Expect = 3e-35, Method: Composition-based stats.
Identities = 51/243 (20%), Positives = 89/243 (36%), Gaps = 18/243 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
+R GR+ N++R +S + GS L G T L+ TL E ++ + ++
Sbjct: 316 IRPDGRKVNEIRPLSSEVGLLPRVHGSGLFTRGQTQALSVCTLAPLREHQIIDGLGTEEY 375
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y S G R A R+ G RAL+ V+ I +
Sbjct: 376 KRFMHHYNFPQFSVGETGPRRAPGRREIGHGALG----ERALQYVIPSEEDFPYTIRLVS 431
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V++++G + A+I G+ +A+ D ++ + V G I
Sbjct: 432 EVLESNGSSSQASICGSTLAMLDAGVPIKAPVAGIAMGLVKLGDDYTILSD--------- 482
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T G I +Q + S+ L AK+ +++
Sbjct: 483 IQGMEDHFGDMDFKVAGTKDG-ITALQMDIKIDGLSRQILEEALTQAKEGRLHILEHLTS 541
Query: 237 VIS 239
IS
Sbjct: 542 TIS 544
Score = 109 bits (273), Expect = 3e-22, Method: Composition-based stats.
Identities = 44/229 (19%), Positives = 81/229 (35%), Gaps = 26/229 (11%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKV---PMWIRNTKHGWITAEYGMLPRS 69
+S+ ++K A G+ L+++GDT +LT A +K + + G +P
Sbjct: 16 LSVEVGQLAKQASGAALIRYGDTVVLTAAVGSKKPRPGDFFPLTVNYEEKMYSVGKVPGG 75
Query: 70 TGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAA 129
R GR R+ R+I R +R + QI + D AA
Sbjct: 76 FLKR------EGRPSDRATLTARLIDRPIRPLFAEGFRNEVQITSTVFSVDQDCSPEMAA 129
Query: 130 ITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDA 189
+ G+ VA G +A + G + G +++ + D+
Sbjct: 130 MLGSSVA-------------LVISDIPFDGPIAGVDVGRIDGKYVINPTIEQAEKSDISL 176
Query: 190 NFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
T I V+ A+ S++ + + I L + Q+ +I
Sbjct: 177 TVAGTHD-AINMVEAGAKE--VSEEAMLEAIMFGHEEIKRLCEFQQQII 222
>gi|315302988|ref|ZP_07873706.1| polyribonucleotide nucleotidyltransferase [Listeria ivanovii FSL
F6-596]
gi|313628638|gb|EFR97053.1| polyribonucleotide nucleotidyltransferase [Listeria ivanovii FSL
F6-596]
Length = 723
Score = 153 bits (385), Expect = 3e-35, Method: Composition-based stats.
Identities = 51/243 (20%), Positives = 89/243 (36%), Gaps = 18/243 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
+R GR+ N++R +S + GS L G T L+ TL E ++ + ++
Sbjct: 316 IRPDGRKVNEIRPLSSEVGLLPRVHGSGLFTRGQTQALSVCTLAPLREHQIIDGLGTEEY 375
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y S G R A R+ G RAL+ V+ I +
Sbjct: 376 KRFMHHYNFPQFSVGETGPRRAPGRREIGHGALG----ERALQYVIPSEEDFPYTIRLVS 431
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V++++G + A+I G+ +A+ D ++ + V G I
Sbjct: 432 EVLESNGSSSQASICGSTLAMLDAGVPIKAPVAGIAMGLVKLGDDYTILSD--------- 482
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T G I +Q + S+ L AK+ +++
Sbjct: 483 IQGMEDHFGDMDFKVAGTKDG-ITALQMDIKIDGLSRQILEEALTQAKEGRLHILEHLTS 541
Query: 237 VIS 239
IS
Sbjct: 542 TIS 544
Score = 109 bits (273), Expect = 3e-22, Method: Composition-based stats.
Identities = 44/229 (19%), Positives = 81/229 (35%), Gaps = 26/229 (11%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKV---PMWIRNTKHGWITAEYGMLPRS 69
+S+ ++K A G+ L+++GDT +LT A +K + + G +P
Sbjct: 16 LSVEVGQLAKQASGAALIRYGDTVVLTAAVGSKKPRPGDFFPLTVNYEEKMYSVGKVPGG 75
Query: 70 TGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAA 129
R GR R+ R+I R +R + QI + D AA
Sbjct: 76 FLKR------EGRPSDRATLTARLIDRPIRPLFAEGFRNEVQITSTVFSVDQDCSPEMAA 129
Query: 130 ITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDA 189
+ G+ VA G +A + G + G +++ + D+
Sbjct: 130 MLGSSVA-------------LVISDIPFDGPIAGVDVGRIDGKYVINPTIEQAEKSDISL 176
Query: 190 NFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
T I V+ A+ S++ + + I L + Q+ +I
Sbjct: 177 TVAGTHD-AINMVEAGAKE--VSEEAMLEAIMFGHEEIKRLCEFQQQII 222
>gi|289434612|ref|YP_003464484.1| polyribonucleotide nucleotidyltransferase [Listeria seeligeri
serovar 1/2b str. SLCC3954]
gi|289170856|emb|CBH27398.1| polyribonucleotide nucleotidyltransferase [Listeria seeligeri
serovar 1/2b str. SLCC3954]
Length = 723
Score = 153 bits (385), Expect = 3e-35, Method: Composition-based stats.
Identities = 51/243 (20%), Positives = 89/243 (36%), Gaps = 18/243 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
+R GR+ N++R +S + GS L G T L+ TL E ++ + ++
Sbjct: 316 IRPDGRKVNEIRPLSSEVGLLPRVHGSGLFTRGQTQALSVCTLAPLREHQIIDGLGTEEY 375
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y S G R A R+ G RAL+ V+ I +
Sbjct: 376 KRFMHHYNFPQFSVGETGPRRAPGRREIGHGALG----ERALQYVIPSEEDFPYTIRLVS 431
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V++++G + A+I G+ +A+ D ++ + V G I
Sbjct: 432 EVLESNGSSSQASICGSTLAMLDAGVPIKAPVAGIAMGLVKLGDDYTILSD--------- 482
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T G I +Q + S+ L AK+ +++
Sbjct: 483 IQGMEDHFGDMDFKVAGTKDG-ITALQMDIKIDGLSRQILEEALTQAKEGRLHILEHLTS 541
Query: 237 VIS 239
IS
Sbjct: 542 TIS 544
Score = 109 bits (273), Expect = 3e-22, Method: Composition-based stats.
Identities = 44/229 (19%), Positives = 81/229 (35%), Gaps = 26/229 (11%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKV---PMWIRNTKHGWITAEYGMLPRS 69
+S+ ++K A G+ L+++GDT +LT A +K + + G +P
Sbjct: 16 LSVEVGQLAKQASGAALIRYGDTVVLTAAVGSKKPRPGDFFPLTVNYEEKMYSVGKVPGG 75
Query: 70 TGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAA 129
R GR R+ R+I R +R + QI + D AA
Sbjct: 76 FLKR------EGRPSDRATLTARLIDRPIRPLFAEGFRNEVQITSTVFSVDQDCSPEMAA 129
Query: 130 ITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDA 189
+ G+ VA G +A + G + G +++ + D+
Sbjct: 130 MLGSSVA-------------LVISDIPFDGPIAGVDVGRIDGKYVINPTIEQAEKSDISL 176
Query: 190 NFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
T I V+ A+ S++ + + I L + Q+ +I
Sbjct: 177 TVAGTHD-AINMVEAGAKE--VSEEAMLEAIMFGHEEIKRLCEFQQQII 222
>gi|330895301|gb|EGH27639.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas syringae
pv. japonica str. M301072PT]
Length = 701
Score = 153 bits (385), Expect = 3e-35, Method: Composition-based stats.
Identities = 45/243 (18%), Positives = 92/243 (37%), Gaps = 18/243 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +R +++ V GS L G+T L ATL + ++ + K
Sbjct: 316 RIDGRDTRTVRPLNIEVGVLPKTHGSALFTRGETQALVVATLGTARDAQLLDTLEGEKKD 375
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + R+ G + R++++++ + + I + +
Sbjct: 376 PFMLHYNFPPFSVGECGRMGGAGRREIGHGRL----ARRSVQAMLPGADVFPYTIRVVSE 431
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ GA +AL D M+ + V +G AI +
Sbjct: 432 ITESNGSSSMASVCGASLALMDAGVPMKAPVAGIAMGLVKEGEKFAILTD---------I 482
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T G + +Q + +++ L A + +++ +
Sbjct: 483 LGDEDHLGDMDFKVAGTSKG-VTALQMDIKIKGITEEIMEIALGQALEARLNILGQMNQI 541
Query: 238 ISN 240
I
Sbjct: 542 IGQ 544
Score = 101 bits (250), Expect = 1e-19, Method: Composition-based stats.
Identities = 36/234 (15%), Positives = 73/234 (31%), Gaps = 29/234 (12%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTH-LLTTATLEEKVP----MWIRNTKHGWITAEYGMLP 67
++L +++ A G+ LV D +L T ++ + + + T G +P
Sbjct: 15 VTLETGRIARQASGAVLVTVDDDVSVLVTVVGAKQADAGKGFFPLSVHYQEKTYAAGKIP 74
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R GR + R+I R +R + + Q++
Sbjct: 75 GGFFKR------EGRPSEKETLTSRLIDRPIRPLFPEGFMNEVQVVCTVVSPSKKIDPDI 128
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY-PIVDLDYGEDSTID 186
AA+ G A G V A +++ Y +
Sbjct: 129 AAMIGTSAA-------------LAISGIPFDGPVGAARVAFHESTGYLLNPTYEQLQASS 175
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
+D T ++ V+ A+ ++D + A D +I K++ +
Sbjct: 176 LDMVVAGTSE-AVLMVESEAKE--LTEDQMLGAVLFAHDEFQVVINAIKELAAE 226
>gi|28871621|ref|NP_794240.1| polyribonucleotide nucleotidyltransferase [Pseudomonas syringae pv.
tomato str. DC3000]
gi|213966643|ref|ZP_03394794.1| polyribonucleotide nucleotidyltransferase [Pseudomonas syringae pv.
tomato T1]
gi|301383153|ref|ZP_07231571.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas syringae
pv. tomato Max13]
gi|302061771|ref|ZP_07253312.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas syringae
pv. tomato K40]
gi|302133785|ref|ZP_07259775.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas syringae
pv. tomato NCPPB 1108]
gi|81729685|sp|Q87WQ8|PNP_PSESM RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|28854873|gb|AAO57935.1| polyribonucleotide nucleotidyltransferase [Pseudomonas syringae pv.
tomato str. DC3000]
gi|213928493|gb|EEB62037.1| polyribonucleotide nucleotidyltransferase [Pseudomonas syringae pv.
tomato T1]
gi|330963979|gb|EGH64239.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas syringae
pv. actinidiae str. M302091]
gi|331016652|gb|EGH96708.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas syringae
pv. lachrymans str. M302278PT]
Length = 701
Score = 153 bits (385), Expect = 3e-35, Method: Composition-based stats.
Identities = 45/243 (18%), Positives = 92/243 (37%), Gaps = 18/243 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +R +++ V GS L G+T L ATL + ++ + K
Sbjct: 316 RIDGRDTRTVRPLNIEVGVLPKTHGSALFTRGETQALVVATLGTARDAQLLDTLEGEKKD 375
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + R+ G + R++++++ + + I + +
Sbjct: 376 PFMLHYNFPPFSVGECGRMGGAGRREIGHGRL----ARRSVQAMLPGADVFPYTIRVVSE 431
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ GA +AL D M+ + V +G AI +
Sbjct: 432 ITESNGSSSMASVCGASLALMDAGVPMKAPVAGIAMGLVKEGEKFAILTD---------I 482
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T G + +Q + +++ L A + +++ +
Sbjct: 483 LGDEDHLGDMDFKVAGTSKG-VTALQMDIKIKGITEEIMEIALGQALEARLNILGQMNQI 541
Query: 238 ISN 240
I
Sbjct: 542 IGQ 544
Score = 101 bits (250), Expect = 1e-19, Method: Composition-based stats.
Identities = 36/234 (15%), Positives = 73/234 (31%), Gaps = 29/234 (12%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTH-LLTTATLEEKVP----MWIRNTKHGWITAEYGMLP 67
++L +++ A G+ LV D +L T ++ + + + T G +P
Sbjct: 15 VTLETGRIARQASGAVLVTVDDDVSVLVTVVGAKQADAGKGFFPLSVHYQEKTYAAGKIP 74
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R GR + R+I R +R + + Q++
Sbjct: 75 GGFFKR------EGRPSEKETLTSRLIDRPIRPLFPEGFMNEVQVVCTVVSTSKKIDPDI 128
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY-PIVDLDYGEDSTID 186
AA+ G A G V A +++ Y +
Sbjct: 129 AAMIGTSAA-------------LAISGIPFDGPVGAARVAFHESTGYLLNPTYEQLQASS 175
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
+D T ++ V+ A+ ++D + A D +I K++ +
Sbjct: 176 LDMVVAGTSE-AVLMVESEAKE--LTEDQMLGAVLFAHDEFQVVINAIKELAAE 226
>gi|330958045|gb|EGH58305.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas syringae
pv. maculicola str. ES4326]
Length = 701
Score = 153 bits (385), Expect = 3e-35, Method: Composition-based stats.
Identities = 45/243 (18%), Positives = 92/243 (37%), Gaps = 18/243 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +R +++ V GS L G+T L ATL + ++ + K
Sbjct: 316 RIDGRDTRTVRPLNIEVGVLPKTHGSALFTRGETQALVVATLGTARDAQLLDTLEGEKKD 375
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + R+ G + R++++++ + + I + +
Sbjct: 376 PFMLHYNFPPFSVGECGRMGGAGRREIGHGRL----ARRSVQAMLPGADVFPYTIRVVSE 431
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ GA +AL D M+ + V +G AI +
Sbjct: 432 ITESNGSSSMASVCGASLALMDAGVPMKAPVAGIAMGLVKEGEKFAILTD---------I 482
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T G + +Q + +++ L A + +++ +
Sbjct: 483 LGDEDHLGDMDFKVAGTSKG-VTALQMDIKIKGITEEIMEIALGQALEARLNILGQMNQI 541
Query: 238 ISN 240
I
Sbjct: 542 IGQ 544
Score = 101 bits (250), Expect = 1e-19, Method: Composition-based stats.
Identities = 36/234 (15%), Positives = 73/234 (31%), Gaps = 29/234 (12%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTH-LLTTATLEEKVP----MWIRNTKHGWITAEYGMLP 67
++L +++ A G+ LV D +L T ++ + + + T G +P
Sbjct: 15 VTLETGRIARQASGAVLVTVDDDVSVLVTVVGAKQADAGKGFFPLSVHYQEKTYAAGKIP 74
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R GR + R+I R +R + + Q++
Sbjct: 75 GGFFKR------EGRPSEKETLTSRLIDRPIRPLFPEGFMNEVQVVCTVVSTSKKIDPDI 128
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY-PIVDLDYGEDSTID 186
AA+ G A G V A +++ Y +
Sbjct: 129 AAMIGTSAA-------------LAISGIPFDGPVGAARVAFHESTGYLLNPTYEQLQASS 175
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
+D T ++ V+ A+ ++D + A D +I K++ +
Sbjct: 176 LDMVVAGTSE-AVLMVESEAKE--LTEDQMLGAVLFAHDEFQVVINAIKELAAE 226
>gi|298488460|ref|ZP_07006491.1| Polyribonucleotide nucleotidyltransferase [Pseudomonas savastanoi
pv. savastanoi NCPPB 3335]
gi|298157085|gb|EFH98174.1| Polyribonucleotide nucleotidyltransferase [Pseudomonas savastanoi
pv. savastanoi NCPPB 3335]
Length = 701
Score = 153 bits (385), Expect = 3e-35, Method: Composition-based stats.
Identities = 45/243 (18%), Positives = 92/243 (37%), Gaps = 18/243 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +R +++ V GS L G+T L ATL + ++ + K
Sbjct: 316 RIDGRDTRTVRPLNIEVGVLPKTHGSALFTRGETQALVVATLGTARDAQLLDTLEGEKKD 375
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + R+ G + R++++++ + + I + +
Sbjct: 376 PFMLHYNFPPFSVGECGRMGGAGRREIGHGRL----ARRSVQAMLPGADVFPYTIRVVSE 431
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ GA +AL D M+ + V +G AI +
Sbjct: 432 ITESNGSSSMASVCGASLALMDAGVPMKAPVAGIAMGLVKEGEKFAILTD---------I 482
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T G + +Q + +++ L A + +++ +
Sbjct: 483 LGDEDHLGDMDFKVAGTSKG-VTALQMDIKIKGITEEIMEIALGQALEARLNILGQMNQI 541
Query: 238 ISN 240
I
Sbjct: 542 IGQ 544
Score = 101 bits (250), Expect = 1e-19, Method: Composition-based stats.
Identities = 36/234 (15%), Positives = 73/234 (31%), Gaps = 29/234 (12%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTH-LLTTATLEEKVP----MWIRNTKHGWITAEYGMLP 67
++L +++ A G+ LV D +L T ++ + + + T G +P
Sbjct: 15 VTLETGRIARQASGAVLVTVDDDVSVLVTVVGAKQADAGKGFFPLSVHYQEKTYAAGKIP 74
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R GR + R+I R +R + + Q++
Sbjct: 75 GGFFKR------EGRPSEKETLTSRLIDRPIRPLFPEGFMNEVQVVCTVVSTSKKIDPDI 128
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY-PIVDLDYGEDSTID 186
AA+ G A G V A +++ Y +
Sbjct: 129 AAMIGTSAA-------------LAISGIPFDGPVGAARVAFHESTGYLLNPTYEQLQASS 175
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
+D T ++ V+ A+ ++D + A D +I K++ +
Sbjct: 176 LDMVVAGTSE-AVLMVESEAKE--LTEDQMLGAVLFAHDEFQVVINAIKELAAE 226
>gi|153864819|ref|ZP_01997588.1| Polyribonucleotide nucleotidyltransferase [Beggiatoa sp. SS]
gi|152145686|gb|EDN72412.1| Polyribonucleotide nucleotidyltransferase [Beggiatoa sp. SS]
Length = 416
Score = 153 bits (385), Expect = 3e-35, Method: Composition-based stats.
Identities = 40/243 (16%), Positives = 87/243 (35%), Gaps = 18/243 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +R I++ V GS L G+T L TL + ++ +
Sbjct: 37 RIDGRDTRTVRPITIRTGVLPRTHGSALFTRGETQALVVTTLGTERDAQIIDALEGEYKE 96
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P G + R+ G + R +++V+ S + + + +
Sbjct: 97 GFLLHYNFPPYCVGEVGRIGTPKRRELGHGRL----ARRGVQAVMPTSEVFPYSVRLVSE 152
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A + GA +AL D ++ + + + + ++
Sbjct: 153 ITESNGSSSMATVCGASLALMDAAVPIKAPVAGIAMGLIKEDEQFVVLTDIM-------- 204
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T G + +Q + +++ L AKD ++ +
Sbjct: 205 -GDEDHLGDMDFKVAGTLEG-VTALQMDIKIDGITREIMETALAQAKDGRLHILSVMDKA 262
Query: 238 ISN 240
++
Sbjct: 263 LAK 265
>gi|66047403|ref|YP_237244.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas syringae
pv. syringae B728a]
gi|75500706|sp|Q4ZNR6|PNP_PSEU2 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|63258110|gb|AAY39206.1| Polyribonucleotide nucleotidyltransferase [Pseudomonas syringae pv.
syringae B728a]
Length = 701
Score = 153 bits (385), Expect = 3e-35, Method: Composition-based stats.
Identities = 45/243 (18%), Positives = 92/243 (37%), Gaps = 18/243 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +R +++ V GS L G+T L ATL + ++ + K
Sbjct: 316 RIDGRDTRTVRPLNIEVGVLPKTHGSALFTRGETQALVVATLGTARDAQLLDTLEGEKKD 375
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + R+ G + R++++++ + + I + +
Sbjct: 376 PFMLHYNFPPFSVGECGRMGGAGRREIGHGRL----ARRSVQAMLPGADVFPYTIRVVSE 431
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ GA +AL D M+ + V +G AI +
Sbjct: 432 ITESNGSSSMASVCGASLALMDAGVPMKAPVAGIAMGLVKEGEKFAILTD---------I 482
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T G + +Q + +++ L A + +++ +
Sbjct: 483 LGDEDHLGDMDFKVAGTSKG-VTALQMDIKIKGITEEIMEIALGQALEARLNILGQMNQI 541
Query: 238 ISN 240
I
Sbjct: 542 IGQ 544
Score = 101 bits (250), Expect = 1e-19, Method: Composition-based stats.
Identities = 36/234 (15%), Positives = 73/234 (31%), Gaps = 29/234 (12%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTH-LLTTATLEEKVP----MWIRNTKHGWITAEYGMLP 67
++L +++ A G+ LV D +L T ++ + + + T G +P
Sbjct: 15 VTLETGRIARQASGAVLVTVDDDVSVLVTVVGAKQADAGKGFFPLSVHYQEKTYAAGKIP 74
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R GR + R+I R +R + + Q++
Sbjct: 75 GGFFKR------EGRPSEKETLTSRLIDRPIRPLFPEGFMNEVQVVCTVVSTSKKIDPDI 128
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY-PIVDLDYGEDSTID 186
AA+ G A G V A +++ Y +
Sbjct: 129 AAMIGTSAA-------------LAISGIPFDGPVGAARVAFHESTGYLLNPTYEQLQASS 175
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
+D T ++ V+ A+ ++D + A D +I K++ +
Sbjct: 176 LDMVVAGTSE-AVLMVESEAKE--LTEDQMLGAVLFAHDEFQVVINAIKELAAE 226
>gi|52080276|ref|YP_079067.1| polynucleotide phosphorylase/polyadenylase [Bacillus licheniformis
ATCC 14580]
gi|52785653|ref|YP_091482.1| polynucleotide phosphorylase/polyadenylase [Bacillus licheniformis
ATCC 14580]
gi|319645944|ref|ZP_08000174.1| polyribonucleotide nucleotidyltransferase [Bacillus sp. BT1B_CT2]
gi|81385548|sp|Q65JH5|PNP_BACLD RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|52003487|gb|AAU23429.1| polynucleotide phosphorylase (PNPase) [Bacillus licheniformis ATCC
14580]
gi|52348155|gb|AAU40789.1| PnpA [Bacillus licheniformis ATCC 14580]
gi|317391694|gb|EFV72491.1| polyribonucleotide nucleotidyltransferase [Bacillus sp. BT1B_CT2]
Length = 705
Score = 153 bits (385), Expect = 3e-35, Method: Composition-based stats.
Identities = 42/244 (17%), Positives = 83/244 (34%), Gaps = 18/244 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56
+R GR +++R +S + GS L G T L+ T + ++ + +
Sbjct: 315 VRPDGRAVDEIRPLSSEVGLLPRTHGSGLFTRGQTQALSICTLGALGDVQILDGLGVEES 374
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y S G R+ G RAL +V I +
Sbjct: 375 KRFMHHYNFPQFSVGETGPMRGPGRREIGHGALG----ERALEPIVPSEKDFPYTIRLVS 430
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V++++G T A+I + +A+ D ++ + V G +
Sbjct: 431 EVLESNGSTSQASICASTLAMMDAGVPIKAPVAGIAMGLVKSGDNYTVLTD--------- 481
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T G + +Q + S++ L AK ++++
Sbjct: 482 IQGMEDHLGDMDFKVAGTSKG-VTALQMDIKIEGLSREILEEALQQAKKGRMEILESMLS 540
Query: 237 VISN 240
++
Sbjct: 541 TLAE 544
Score = 119 bits (299), Expect = 2e-25, Method: Composition-based stats.
Identities = 42/232 (18%), Positives = 90/232 (38%), Gaps = 26/232 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATL---EEKVPMWIRNTKHGWITAEYGMLP 67
R++++ ++K A G+ +V++GDT +L+TAT + V + + G +P
Sbjct: 15 RKLTVETGQLAKQANGAVMVRYGDTAVLSTATASKEPKTVDFFPLTVNYEERLYAVGKIP 74
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R GR ++ R+I R +R + Q++ + D +
Sbjct: 75 GGFIKR------EGRPSEKAILASRLIDRPIRPLFADGFRNEVQVVSIVMSVDQDCSSEM 128
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
AA+ G+ +AL +G +A ++ G + I++ + D+
Sbjct: 129 AAMFGSSLALC-------------VSDIPFEGPIAGVTVGRVDNKFIINPTLEQLEKSDI 175
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
T I V+ A+ ++ + + I LI Q+++++
Sbjct: 176 HLVVAGTKD-AINMVEAGADEVP--EEIMLEAIMFGHEEIKRLIAFQEEIVA 224
>gi|328468614|gb|EGF39614.1| polynucleotide phosphorylase/polyadenylase [Listeria monocytogenes
1816]
Length = 728
Score = 153 bits (385), Expect = 3e-35, Method: Composition-based stats.
Identities = 51/243 (20%), Positives = 89/243 (36%), Gaps = 18/243 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
+R GR+ N++R +S + GS L G T L+ TL E ++ + ++
Sbjct: 316 IRPDGRKVNEIRPLSSEVGMLPRVHGSGLFTRGQTQALSVCTLAPLREHQIIDGLGTEEY 375
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y S G R A R+ G RAL+ V+ I +
Sbjct: 376 KRFMHHYNFPQFSVGETGPRRAPGRREIGHGALG----ERALQYVIPSEEEFPYTIRLVS 431
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V++++G + A+I G+ +A+ D ++ + V G I
Sbjct: 432 EVLESNGSSSQASICGSTLAMLDAGVPIKAPVAGIAMGLVKLGDDYTILSD--------- 482
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T G I +Q + S+ L AK+ +++
Sbjct: 483 IQGMEDHFGDMDFKVAGTKDG-ITALQMDIKIDGLSRQILDEALTQAKEGRLHILEHLTS 541
Query: 237 VIS 239
IS
Sbjct: 542 TIS 544
Score = 111 bits (277), Expect = 1e-22, Method: Composition-based stats.
Identities = 44/230 (19%), Positives = 83/230 (36%), Gaps = 26/230 (11%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKV---PMWIRNTKHGWITAEYGMLPRS 69
+S+ ++K A G+ L+++GDT +LT A +K + + G +P
Sbjct: 16 LSVEVGQLAKQASGAALIRYGDTVVLTAAVGSKKPRPGDFFPLTVNYEEKMYSVGKVPGG 75
Query: 70 TGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAA 129
R GR R+ R+I R +R + QI + D AA
Sbjct: 76 FLKR------EGRPSDRATLTARLIDRPIRPLFAEGFRNEVQITSTVFSVDQDCSPEMAA 129
Query: 130 ITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDA 189
+ G+ VA +G +A + G + G +++ + D+
Sbjct: 130 MLGSSVA-------------LVISDIPFEGPIAGVDVGRIDGKYVINPTIEQAEKSDISL 176
Query: 190 NFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
T I V+ A+ S++ + + I L + Q+ +I+
Sbjct: 177 TVAGTYD-AINMVEAGAKE--VSEEAMLEAIMFGHEEIKRLCEFQQQIIA 223
>gi|260063685|ref|YP_003196765.1| polynucleotide phosphorylase/polyadenylase [Robiginitalea biformata
HTCC2501]
gi|88783130|gb|EAR14303.1| putative polyribonucleotide nucleotidyltransferase [Robiginitalea
biformata HTCC2501]
Length = 750
Score = 153 bits (385), Expect = 3e-35, Method: Composition-based stats.
Identities = 47/243 (19%), Positives = 81/243 (33%), Gaps = 18/243 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
+RL GR+ +++R I GS + G+T L T TL E +
Sbjct: 317 IRLDGRKTDEIRPIWCEVDYLPSTHGSAIFTRGETQALATVTLGTSREANIIDMPSFEGE 376
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P STG S R+ G QR + R + + +
Sbjct: 377 ERFYLHYNFPPFSTGEARPIRGTSRREIGHGNLAQRALSRQVP------EDCPYTVRVVS 430
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V++++G + A + +AL D + + + + + D
Sbjct: 431 EVLESNGSSSMATVCAGTMALMDAGVKLRKPVSGIAMGLISDPESG-------KYAVLSD 483
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T G I Q + S + L A+D ++ D
Sbjct: 484 ILGDEDHLGDMDFKVTGTADG-ITACQMDIKIKGLSYEILIKALKQARDGRLHILSKLTD 542
Query: 237 VIS 239
I+
Sbjct: 543 TIA 545
Score = 104 bits (260), Expect = 8e-21, Method: Composition-based stats.
Identities = 35/239 (14%), Positives = 75/239 (31%), Gaps = 27/239 (11%)
Query: 7 QENQMREISLTRR-VSKYAEGSCLVKFGDTHLLTTA---TLEEKVPMWIRNTKHGWITAE 62
REIS+ ++K A GS +V+ G+ LL T + +
Sbjct: 11 DLGDGREISIETGKLAKQAHGSVVVRSGNCMLLCTVVSNYKASDLDFLPLTVDYREKFHA 70
Query: 63 YGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQAD 122
G P R R + R++ R LR + + Q++I D
Sbjct: 71 SGRYPGGFFKR------EARPSTGEILVMRLVDRVLRPLFPKNYHCETQVMIQLMSHDDD 124
Query: 123 GGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGED 182
+ + + + ++ + G + G I++ +
Sbjct: 125 VMPDA-------------MAGLAASAAIQLSDFPFECPISEVRVGRVDGEFIINPTRTQL 171
Query: 183 STIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
+ D+D ++ V+ E S++ + A + + I Q ++++
Sbjct: 172 ESSDIDMIV-GASEDSVMMVE--GEMDEISEEDMTEAIKFAHEAVKVQIAAQNR-LADK 226
>gi|187471095|sp|Q0A7A1|PNP_ALHEH RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
Length = 698
Score = 153 bits (385), Expect = 3e-35, Method: Composition-based stats.
Identities = 38/242 (15%), Positives = 84/242 (34%), Gaps = 18/242 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +R I + GS + G+T + TL + ++ I +
Sbjct: 317 RIDGRDTRTVRPIDIEVGSLPRTHGSAIFTRGETQAVVVTTLGTGRDAQIIDAIEGERKE 376
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P G R+ G + R + +V+ + I + +
Sbjct: 377 QFMLHYNFPPYCVGETGFMGTPKRREIGHGKL----AKRGIEAVMPAADDCPYVIRVVSE 432
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A + G ++L D ++ + + + A+ +
Sbjct: 433 ITESNGSSSMATVCGTSLSLMDAGVPVKAPVAGIAMGLIKEDEQFAVLSD---------I 483
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T+SG + +Q + +++ L A++ ++ +
Sbjct: 484 LGDEDHLGDMDFKVAGTESG-VTALQMDIKIQGITREIMEQALEQAREGRLHILGEMNNA 542
Query: 238 IS 239
IS
Sbjct: 543 IS 544
Score = 99.1 bits (245), Expect = 5e-19, Method: Composition-based stats.
Identities = 37/232 (15%), Positives = 81/232 (34%), Gaps = 27/232 (11%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPM----WIRNTKHGWITAEYGMLPR 68
++L V++ A+G+ LV DT +L TA ++ + + T G +P
Sbjct: 15 VTLETGGVARQADGAVLVNMSDTVVLVTAVGRKEADPGKGFFPLTVNYQERTYAAGKIPG 74
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
R GR + R+I R +R + Q++ + +
Sbjct: 75 GFFKR------EGRPSEKETLTCRLIDRPIRPLFPEGFYNEVQVVATVLSMNPEVDADIP 128
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+ GA A G + A G G +++ + E + D+D
Sbjct: 129 ALIGASAA-------------LSISGIPFDGPIGAARVGYKDGEYLLNPTFEETAASDLD 175
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
T++ ++ V+ A + ++ + +++ I+ ++ +
Sbjct: 176 LVVAGTEN-AVLMVESEANQ--LPEEAMLGAVLYGHEQMQVAIQAINELTAE 224
>gi|325915559|ref|ZP_08177870.1| polyribonucleotide nucleotidyltransferase (polynucleotide
phosphorylase) [Xanthomonas vesicatoria ATCC 35937]
gi|325538275|gb|EGD09960.1| polyribonucleotide nucleotidyltransferase (polynucleotide
phosphorylase) [Xanthomonas vesicatoria ATCC 35937]
Length = 704
Score = 153 bits (385), Expect = 3e-35, Method: Composition-based stats.
Identities = 43/242 (17%), Positives = 86/242 (35%), Gaps = 18/242 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
+R+ GR + +R IS V GS L G+T + TL + +V +
Sbjct: 315 VRIDGRALDTVRPISAKAGVLPRTHGSALFTRGETQAIVITTLGTARDGQVIDAVSGEYK 374
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P S G + A R+ G + R + +V+ I +
Sbjct: 375 ENFLFHYNFPPYSVGECGRFGAPKRREIGHGRL----AKRGVLAVMPSLEEFPYTIRVVS 430
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
++ +++G + A++ G+ +AL D ++ + V +G+ +
Sbjct: 431 EITESNGSSSMASVCGSSLALMDAGVPIKAPVAGIAMGLVKEGNDFVVLSD--------- 481
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T G + +Q + +++ L AK ++
Sbjct: 482 ILGDEDHLGDMDFKVAGTAEG-VSALQMDIKIEGITEEIMKQALQQAKAGRLHILGEMAH 540
Query: 237 VI 238
+
Sbjct: 541 AL 542
Score = 81.8 bits (200), Expect = 8e-14, Method: Composition-based stats.
Identities = 45/228 (19%), Positives = 79/228 (34%), Gaps = 27/228 (11%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTKHGWITAEYGMLPR 68
++L +++ A G+ +VKF DT LL TA + E + + G +P
Sbjct: 15 VTLETGEIARQAGGAVIVKFDDTVLLVTAVAAKSAREGQDFFPLTVDYQEKFYAGGRIPG 74
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
R GR + I R+I R +R + QII + D A
Sbjct: 75 GFFKR------EGRATEKETLISRLIDRPIRPLFPEDYKNEVQIIATVMSMNPDIDGDIA 128
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+ GA AL G +AA G G I++ E ++
Sbjct: 129 ALIGASAALSLAGT-------------PFNGPIAAAKVGYKNGEYILNPTVTELKDSQLE 175
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
T + ++ V+ AE + ++ + + +I + +
Sbjct: 176 LVVAGTAN-AVLMVESEAELLS--EEVMLGAVTFGHREMQKVINIINE 220
>gi|315658436|ref|ZP_07911308.1| polyribonucleotide nucleotidyltransferase [Staphylococcus
lugdunensis M23590]
gi|315496765|gb|EFU85088.1| polyribonucleotide nucleotidyltransferase [Staphylococcus
lugdunensis M23590]
Length = 698
Score = 153 bits (385), Expect = 3e-35, Method: Composition-based stats.
Identities = 45/242 (18%), Positives = 88/242 (36%), Gaps = 18/242 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56
+R GR+ +++R + + A GS L G T L+ T + ++ + +
Sbjct: 318 IRPDGRKPDEIRPLESEVGILPRAHGSGLFTRGQTQALSVLTLGALGDYQIIDGLGPEQE 377
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y S G A R+ G RALR ++ ++ I I
Sbjct: 378 KRFMHHYNFPNFSVGETGPVRAPGRREIGHGALG----ERALRHIIPDTSKFPYTIRIVS 433
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V++++G + A+I G+ +AL D ++ + V + + D
Sbjct: 434 EVLESNGSSSQASICGSTLALMDAGVPIKAPVAGIAMGLVTRED---------SYTILTD 484
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED+ D+D T G I +Q + +++ L A+ ++
Sbjct: 485 IQGMEDALGDMDFKVAGTKDG-ITAIQMDIKIDGLTREVIEEALEQARKGRLAIMDHMLQ 543
Query: 237 VI 238
I
Sbjct: 544 TI 545
Score = 109 bits (271), Expect = 4e-22, Method: Composition-based stats.
Identities = 40/231 (17%), Positives = 83/231 (35%), Gaps = 26/231 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKV---PMWIRNTKHGWITAEYGMLP 67
R +++ ++K A G+ LV++GDT +L+TA ++ + + G +P
Sbjct: 15 RSLTIETGQLAKQANGAVLVRYGDTVVLSTAVASKEPRDGDFFPLTVNYEEKMYAAGKIP 74
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R GR G + R+I R +R + QI+ D
Sbjct: 75 GGFKKR------EGRPGDEATLTARLIDRPIRPLFPKGYKHDVQIMNIVLSADPDCSPEM 128
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
AA+ G+ +A +G +A ++ G + G +++ + +
Sbjct: 129 AAMIGSSMA-------------LSVSDIPFQGPIAGVNVGYVDGKYVINPTLEQKEQSRL 175
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
D + V+ A ++ + D I L++ Q+ ++
Sbjct: 176 DLEVAGHKD-AVNMVEAGASE--ITEQEMLEAIFFGHDEIKRLVEFQQQIV 223
>gi|284043327|ref|YP_003393667.1| ribonuclease PH [Conexibacter woesei DSM 14684]
gi|283947548|gb|ADB50292.1| ribonuclease PH [Conexibacter woesei DSM 14684]
Length = 245
Score = 153 bits (385), Expect = 3e-35, Method: Composition-based stats.
Identities = 112/230 (48%), Positives = 146/230 (63%), Gaps = 2/230 (0%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R GR +R +S + A GS L+ G+T ++ TA++EE VP W+ GW+TA
Sbjct: 5 RSYGRTAEGLRPVSFEPGFVRSATGSALIAIGETRVICTASVEESVPRWMTGRGTGWLTA 64
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
EYGMLP STG R R+ GR GR+ EIQR+IGR+LR VVD SALG R + +DCDV+QA
Sbjct: 65 EYGMLPASTGQRKARDVTKGRADGRTVEIQRLIGRSLRGVVDFSALGERTVYVDCDVLQA 124
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
DGGTR A+ITG +VAL + + L G VAA+S G++ G P++DLDY E
Sbjct: 125 DGGTRCASITGGFVALQLACERLVAD--GLLERLPLTGSVAAVSAGIVDGVPLLDLDYPE 182
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231
DST +VDAN VMT G +VEVQ +AER S+ H +L LA+ IA+L
Sbjct: 183 DSTAEVDANVVMTGEGGLVEVQATAERTPLSRAHLDDLLALAERGIAELR 232
>gi|322418695|ref|YP_004197918.1| polyribonucleotide nucleotidyltransferase [Geobacter sp. M18]
gi|320125082|gb|ADW12642.1| polyribonucleotide nucleotidyltransferase [Geobacter sp. M18]
Length = 696
Score = 153 bits (385), Expect = 3e-35, Method: Composition-based stats.
Identities = 49/242 (20%), Positives = 86/242 (35%), Gaps = 18/242 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +R I+ + A GS L G+T + ATL +E+ +
Sbjct: 312 RIDGRDTKTIRNIATEVGLLPRAHGSALFTRGETQSIVAATLGTSVDEQRIDSLYGDSRK 371
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G R A R+ G RAL+ V+ I I D
Sbjct: 372 KFLLHYNFPPYSVGETSFRLAPGRREIGHGML----AERALQQVLPKHDDFPYTIRIVSD 427
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A + G +++ D ++ + + +G AI +
Sbjct: 428 ITESNGSSSMATVCGGSLSMMDAGIPIKAPVAGIAMGLIKEGDDFAILSD---------I 478
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T G + +Q + +++ A L AK ++
Sbjct: 479 LGDEDHLGDMDFKVAGTAEG-VTALQMDIKIGGVTREIMSAALAQAKAGRVHILGEMAKT 537
Query: 238 IS 239
I+
Sbjct: 538 IA 539
Score = 101 bits (251), Expect = 1e-19, Method: Composition-based stats.
Identities = 43/232 (18%), Positives = 83/232 (35%), Gaps = 27/232 (11%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVP----MWIRNTKHGWITAEYGMLPR 68
I++ ++K A G+ ++K GDT +L TA + + + G +P
Sbjct: 14 ITIETGKIAKQASGAVMIKSGDTMVLVTAVAMKSAKEGQGFFPLTVNYQEKAYAGGRIPG 73
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
S R GR R+I R +R + L Q++ D
Sbjct: 74 SFFKR------EGRPSDNETLTCRLIDRPIRPLFPEGFLNDTQVMATVVSADKDHDPGIL 127
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+ GA AL G +A + G + G I + ++ D++
Sbjct: 128 AMIGASAALM-------------VSDVPFAGPIAGVKVGRVDGVFIANPSAEQEEQSDME 174
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
+ I+ V+GSA S++ + K + ++ Q+++++
Sbjct: 175 IVIAASKD-AILMVEGSASE--VSENDLLEAIFFGKQAVQGILAAQEELVAK 223
>gi|302185436|ref|ZP_07262109.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas syringae
pv. syringae 642]
Length = 701
Score = 153 bits (385), Expect = 3e-35, Method: Composition-based stats.
Identities = 45/243 (18%), Positives = 92/243 (37%), Gaps = 18/243 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +R +++ V GS L G+T L ATL + ++ + K
Sbjct: 316 RIDGRDTRTVRPLNIEVGVLPKTHGSALFTRGETQALVVATLGTARDAQLLDTLEGEKKD 375
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + R+ G + R++++++ + + I + +
Sbjct: 376 PFMLHYNFPPFSVGECGRMGGAGRREIGHGRL----ARRSVQAMLPGADVFPYTIRVVSE 431
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ GA +AL D M+ + V +G AI +
Sbjct: 432 ITESNGSSSMASVCGASLALMDAGVPMKAPVAGIAMGLVKEGEKFAILTD---------I 482
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T G + +Q + +++ L A + +++ +
Sbjct: 483 LGDEDHLGDMDFKVAGTSKG-VTALQMDIKIKGITEEIMEIALGQALEARLNILGQMNQI 541
Query: 238 ISN 240
I
Sbjct: 542 IGQ 544
Score = 101 bits (250), Expect = 1e-19, Method: Composition-based stats.
Identities = 36/234 (15%), Positives = 73/234 (31%), Gaps = 29/234 (12%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTH-LLTTATLEEKVP----MWIRNTKHGWITAEYGMLP 67
++L +++ A G+ LV D +L T ++ + + + T G +P
Sbjct: 15 VTLETGRIARQASGAVLVTVDDDVSVLVTVVGAKQADAGKGFFPLSVHYQEKTYAAGKIP 74
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R GR + R+I R +R + + Q++
Sbjct: 75 GGFFKR------EGRPSEKETLTSRLIDRPIRPLFPEGFMNEVQVVCTVVSTSKKIDPDI 128
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY-PIVDLDYGEDSTID 186
AA+ G A G V A +++ Y +
Sbjct: 129 AAMIGTSAA-------------LAISGIPFDGPVGAARVAFHESTGYLLNPTYEQLQASS 175
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
+D T ++ V+ A+ ++D + A D +I K++ +
Sbjct: 176 LDMVVAGTSE-AVLMVESEAKE--LTEDQMLGAVLFAHDEFQVVINAIKELAAE 226
>gi|71734516|ref|YP_276307.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas syringae
pv. phaseolicola 1448A]
gi|257482257|ref|ZP_05636298.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas syringae
pv. tabaci ATCC 11528]
gi|289627537|ref|ZP_06460491.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas syringae
pv. aesculi str. NCPPB3681]
gi|289646965|ref|ZP_06478308.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas syringae
pv. aesculi str. 2250]
gi|123747552|sp|Q48E81|PNP_PSE14 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|71555069|gb|AAZ34280.1| polyribonucleotide nucleotidyltransferase [Pseudomonas syringae pv.
phaseolicola 1448A]
gi|330868250|gb|EGH02959.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas syringae
pv. aesculi str. 0893_23]
gi|330888654|gb|EGH21315.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas syringae
pv. mori str. 301020]
gi|330987059|gb|EGH85162.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas syringae
pv. lachrymans str. M301315]
gi|331011503|gb|EGH91559.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas syringae
pv. tabaci ATCC 11528]
Length = 701
Score = 153 bits (385), Expect = 3e-35, Method: Composition-based stats.
Identities = 45/243 (18%), Positives = 92/243 (37%), Gaps = 18/243 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +R +++ V GS L G+T L ATL + ++ + K
Sbjct: 316 RIDGRDTRTVRPLNIEVGVLPKTHGSALFTRGETQALVVATLGTARDAQLLDTLEGEKKD 375
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + R+ G + R++++++ + + I + +
Sbjct: 376 PFMLHYNFPPFSVGECGRMGGAGRREIGHGRL----ARRSVQAMLPGADVFPYTIRVVSE 431
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ GA +AL D M+ + V +G AI +
Sbjct: 432 ITESNGSSSMASVCGASLALMDAGVPMKAPVAGIAMGLVKEGEKFAILTD---------I 482
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T G + +Q + +++ L A + +++ +
Sbjct: 483 LGDEDHLGDMDFKVAGTSKG-VTALQMDIKIKGITEEIMEIALGQALEARLNILGQMNQI 541
Query: 238 ISN 240
I
Sbjct: 542 IGQ 544
Score = 101 bits (250), Expect = 1e-19, Method: Composition-based stats.
Identities = 36/234 (15%), Positives = 73/234 (31%), Gaps = 29/234 (12%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTH-LLTTATLEEKVP----MWIRNTKHGWITAEYGMLP 67
++L +++ A G+ LV D +L T ++ + + + T G +P
Sbjct: 15 VTLETGRIARQASGAVLVTVDDDVSVLVTVVGAKQADAGKGFFPLSVHYQEKTYAAGKIP 74
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R GR + R+I R +R + + Q++
Sbjct: 75 GGFFKR------EGRPSEKETLTSRLIDRPIRPLFPEGFMNEVQVVCTVVSTSKKIDPDI 128
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY-PIVDLDYGEDSTID 186
AA+ G A G V A +++ Y +
Sbjct: 129 AAMIGTSAA-------------LAISGIPFDGPVGAARVAFHESTGYLLNPTYEQLQASS 175
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
+D T ++ V+ A+ ++D + A D +I K++ +
Sbjct: 176 LDMVVAGTSE-AVLMVESEAKE--LTEDQMLGAVLFAHDEFQVVINAIKELAAE 226
>gi|330937951|gb|EGH41738.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas syringae
pv. pisi str. 1704B]
Length = 701
Score = 153 bits (385), Expect = 3e-35, Method: Composition-based stats.
Identities = 45/243 (18%), Positives = 92/243 (37%), Gaps = 18/243 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +R +++ V GS L G+T L ATL + ++ + K
Sbjct: 316 RIDGRDTRTVRPLNIEVGVLPKTHGSALFTRGETQALVVATLGTARDAQLLDTLEGEKKD 375
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + R+ G + R++++++ + + I + +
Sbjct: 376 PFMLHYNFPPFSVGECGRMGGAGRREIGHGRL----ARRSVQAMLPGADVFPYTIRVVSE 431
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ GA +AL D M+ + V +G AI +
Sbjct: 432 ITESNGSSSMASVCGASLALMDAGVPMKAPVAGIAMGLVKEGEKFAILTD---------I 482
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T G + +Q + +++ L A + +++ +
Sbjct: 483 LGDEDHLGDMDFKVAGTSKG-VTALQMDIKIKGITEEIMEIALGQALEARLNILGQMNQI 541
Query: 238 ISN 240
I
Sbjct: 542 IGQ 544
Score = 101 bits (250), Expect = 1e-19, Method: Composition-based stats.
Identities = 36/234 (15%), Positives = 73/234 (31%), Gaps = 29/234 (12%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTH-LLTTATLEEKVP----MWIRNTKHGWITAEYGMLP 67
++L +++ A G+ LV D +L T ++ + + + T G +P
Sbjct: 15 VTLETGRIARQASGAVLVTVDDDVSVLVTVVGAKQADAGKGFFPLSVHYQEKTYAAGKIP 74
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R GR + R+I R +R + + Q++
Sbjct: 75 GGFFKR------EGRPSEKETLTSRLIDRPIRPLFPEGFMNEVQVVCTVVSTSKKIDPDI 128
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY-PIVDLDYGEDSTID 186
AA+ G A G V A +++ Y +
Sbjct: 129 AAMIGTSAA-------------LAISGIPFDGPVGAARVAFHESTGYLLNPTYEQLQASS 175
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
+D T ++ V+ A+ ++D + A D +I K++ +
Sbjct: 176 LDMVVAGTSE-AVLMVESEAKE--LTEDQMLGAVLFAHDEFQVVINAIKELAAE 226
>gi|320322524|gb|EFW78617.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas syringae
pv. glycinea str. B076]
gi|320330007|gb|EFW85994.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas syringae
pv. glycinea str. race 4]
gi|330875199|gb|EGH09348.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas syringae
pv. glycinea str. race 4]
Length = 701
Score = 153 bits (385), Expect = 3e-35, Method: Composition-based stats.
Identities = 45/243 (18%), Positives = 92/243 (37%), Gaps = 18/243 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +R +++ V GS L G+T L ATL + ++ + K
Sbjct: 316 RIDGRDTRTVRPLNIEVGVLPKTHGSALFTRGETQALVVATLGTARDAQLLDTLEGEKKD 375
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + R+ G + R++++++ + + I + +
Sbjct: 376 PFMLHYNFPPFSVGECGRMGGAGRREIGHGRL----ARRSVQAMLPGADVFPYTIRVVSE 431
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ GA +AL D M+ + V +G AI +
Sbjct: 432 ITESNGSSSMASVCGASLALMDAGVPMKAPVAGIAMGLVKEGEKFAILTD---------I 482
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T G + +Q + +++ L A + +++ +
Sbjct: 483 LGDEDHLGDMDFKVAGTSKG-VTALQMDIKIKGITEEIMEIALGQALEARLNILGQMNQI 541
Query: 238 ISN 240
I
Sbjct: 542 IGQ 544
Score = 101 bits (250), Expect = 1e-19, Method: Composition-based stats.
Identities = 36/234 (15%), Positives = 73/234 (31%), Gaps = 29/234 (12%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTH-LLTTATLEEKVP----MWIRNTKHGWITAEYGMLP 67
++L +++ A G+ LV D +L T ++ + + + T G +P
Sbjct: 15 VTLETGRIARQASGAVLVTVDDDVSVLVTVVGAKQADAGKGFFPLSVHYQEKTYAAGKIP 74
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R GR + R+I R +R + + Q++
Sbjct: 75 GGFFKR------EGRPSEKETLTSRLIDRPIRPLFPEGFMNEVQVVCTVVSTSKKIDPDI 128
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY-PIVDLDYGEDSTID 186
AA+ G A G V A +++ Y +
Sbjct: 129 AAMIGTSAA-------------LAISGIPFDGPVGAARVAFHESTGYLLNPTYEQLQASS 175
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
+D T ++ V+ A+ ++D + A D +I K++ +
Sbjct: 176 LDMVVAGTSE-AVLMVESEAKE--LTEDQMLGAVLFAHDEFQVVINAIKELAAE 226
>gi|283956649|ref|ZP_06374128.1| polyribonucleotide nucleotidyltransferase [Campylobacter jejuni
subsp. jejuni 1336]
gi|283791898|gb|EFC30688.1| polyribonucleotide nucleotidyltransferase [Campylobacter jejuni
subsp. jejuni 1336]
Length = 719
Score = 153 bits (385), Expect = 3e-35, Method: Composition-based stats.
Identities = 46/247 (18%), Positives = 84/247 (34%), Gaps = 22/247 (8%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWI------RNTK 55
R GR N++R IS+ + A GSCL G T L ATL + + +N
Sbjct: 336 RADGRSLNEVRPISIETNLLPNAHGSCLFTRGQTQALVVATLGGENDAQMIDLLTEKNPI 395
Query: 56 HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115
Y S G +A R+ G RAL + I +
Sbjct: 396 SERFMVNYNFPGFSVGEASPIKAPGRRELGHGNL----AKRALYPSI--DENYPYVIRLV 449
Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIV 175
++++++G + A + G +AL + + + A+ ++
Sbjct: 450 SEILESNGSSSMATVCGGSLALKAAGVPSLKLVAGVAMGLIFEDSKFAVLTDIM------ 503
Query: 176 DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
ED D+D + G + +Q + Q+ L AK+ ++ + +
Sbjct: 504 ---GLEDHDGDMDFKVAGSKDG-VTALQMDIKLGGIDQETLKQALYQAKEGRIHILNIME 559
Query: 236 DVISNEV 242
+ V
Sbjct: 560 EAAKEIV 566
Score = 84.1 bits (206), Expect = 2e-14, Method: Composition-based stats.
Identities = 40/250 (16%), Positives = 76/250 (30%), Gaps = 48/250 (19%)
Query: 20 VSKYAEGSCLVKFGDTHLLTTATLEE---KVPMWIRNTKHGWITAEYGMLPRSTGNRVKR 76
V+K A G+ L++ G + +L T EE + ++ G +P R
Sbjct: 19 VAKQAAGAVLMRQGKSVVLATVAREEKQVEEDFLPLTVQYIEKAYAAGKIPGGYVKR--- 75
Query: 77 EAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVA 136
+ R+I R+LR + QI++ + ++ A VA
Sbjct: 76 ---ETKPSDAETLTARIIDRSLRPLFPKGYAYPTQIVVMVLSADPKVDLQVMSLNAASVA 132
Query: 137 LHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDS 196
L+ +K V + G + G I++ + E +D
Sbjct: 133 LY-------------LSDIPMKAPVCGVRIGKIDGNFILNPNNEELQNSTLDLYVAGVKD 179
Query: 197 GHIVEVQGSA-------------------------ERATFSQDHFFAMLNLAKDRIADLI 231
++ ++ A S+D LNLA+ I +
Sbjct: 180 -ELLMIEMRALPDQKENEIFIEAPYADVLTQTTSQNMNELSEDEILEALNLAQKAILNGS 238
Query: 232 KLQKDVISNE 241
++ S
Sbjct: 239 NAYEEAFSKH 248
>gi|294085143|ref|YP_003551903.1| polyribonucleotide nucleotidyltransferase [Candidatus
Puniceispirillum marinum IMCC1322]
gi|292664718|gb|ADE39819.1| Polyribonucleotide nucleotidyltransferase [Candidatus
Puniceispirillum marinum IMCC1322]
Length = 709
Score = 153 bits (385), Expect = 3e-35, Method: Composition-based stats.
Identities = 43/244 (17%), Positives = 90/244 (36%), Gaps = 18/244 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
+R+ GR +R I A GS L G+T + ATL +E++ +
Sbjct: 311 VRIDGRDTKTVRAIVSEAGFLPRAHGSALFTRGETQAMVVATLGTGQDEQIIDSLVGEGR 370
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P S G + + R+ G + RA+R ++ + +
Sbjct: 371 SNFMLHYNFPPYSVGEAGRVGSPGRREIGHGKL----AWRAIRPLMPSKEEFPYTVRLVS 426
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
++ +++G + A + G +AL D + + + +G A+
Sbjct: 427 EITESNGSSSMATVCGGSLALMDSGVPLARPVAGIAMGLIKEGDDFAVLSD--------- 477
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D +D+G I +Q + + + + L+ A+D ++
Sbjct: 478 ILGDEDHLGDMDFKVAGSDAG-ITSLQMDIKITSITPEIMQIALDQARDGRIHILGEMAK 536
Query: 237 VISN 240
+++
Sbjct: 537 ALTS 540
Score = 113 bits (283), Expect = 2e-23, Method: Composition-based stats.
Identities = 41/227 (18%), Positives = 76/227 (33%), Gaps = 27/227 (11%)
Query: 13 EISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----HGWITAEYGMLP 67
+ L V++ A+G+ +V G+T +L TA ++ + G +P
Sbjct: 15 PLVLESGKVARQADGAVMVTLGETTVLCTAVAAQQAKPGQDFFPLTVNYQEKAFAAGKIP 74
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R GR + R+I R +R + S Q+I +
Sbjct: 75 GGFFKR------EGRPSENETLVCRLIDRPIRPLFPKSFKCETQVICTVLSHDMENNPDI 128
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
AA+ GA A G +A G + +++ + D+
Sbjct: 129 AAMIGASAA-------------LTLSGVPFFGPIAGARIGWINDEYVLNPTVEQMDESDL 175
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
D T G ++ V+ A+ S++ +N D I +I+
Sbjct: 176 DLVMAGTMEG-VLMVESEAQE--LSEEVMLGAVNFGHDAIKPVIEAI 219
>gi|283954815|ref|ZP_06372331.1| polyribonucleotide nucleotidyltransferase [Campylobacter jejuni
subsp. jejuni 414]
gi|283793655|gb|EFC32408.1| polyribonucleotide nucleotidyltransferase [Campylobacter jejuni
subsp. jejuni 414]
Length = 713
Score = 153 bits (385), Expect = 3e-35, Method: Composition-based stats.
Identities = 48/247 (19%), Positives = 86/247 (34%), Gaps = 22/247 (8%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWI------RNTK 55
R GR N++R IS+ + A GSCL G T L ATL + + +N
Sbjct: 355 RADGRSLNEVRPISIETNILPNAHGSCLFTRGQTQALVVATLGGENDAQMIDLLTEKNPI 414
Query: 56 HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115
+ Y S G +A R+ G RAL V I +
Sbjct: 415 NERFMVNYNFPGFSVGEASPIKAPGRRELGHGNL----AKRALYPSV--DENYPYVIRLV 468
Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIV 175
++++++G + A + G +AL + + + + AI ++
Sbjct: 469 SEILESNGSSSMATVCGGSLALKAAGVPSLKLVAGVAMGLIFEDNKHAILTDIM------ 522
Query: 176 DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
ED D+D + G + +Q + Q+ L AK+ ++ + +
Sbjct: 523 ---GLEDHDGDMDFKVAGSKDG-VTALQMDIKLGGIDQETLKQALYQAKEGRIHILNIME 578
Query: 236 DVISNEV 242
+ V
Sbjct: 579 EAAKEIV 585
Score = 83.7 bits (205), Expect = 2e-14, Method: Composition-based stats.
Identities = 42/250 (16%), Positives = 77/250 (30%), Gaps = 48/250 (19%)
Query: 20 VSKYAEGSCLVKFGDTHLLTTATLEE---KVPMWIRNTKHGWITAEYGMLPRSTGNRVKR 76
V+K A G+ L+K G + +L T EE + ++ T G +P R
Sbjct: 38 VAKQATGAVLMKQGKSVVLATVAREEKQVEEDFLPLTVQYIEKTYAAGKIPGGYVKR--- 94
Query: 77 EAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVA 136
+ R+I R+LR + QI++ + ++ A VA
Sbjct: 95 ---ETKPSDAETLTARIIDRSLRPLFPKGYAYPTQIVVMVLSADPKVDLQVMSLNAASVA 151
Query: 137 LHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDS 196
L+ +K V + G + G I++ + E +D
Sbjct: 152 LY-------------LSDIPMKAPVCGVRIGRIDGNFILNPNNEELKNSTLDLYVAGVKD 198
Query: 197 GHIVEVQGSA-------------------------ERATFSQDHFFAMLNLAKDRIADLI 231
++ ++ A ++D LNLA+ I +
Sbjct: 199 -ELLMIEMRALPDQKENEIFIEAPYADVLTQTTSQNMNELNEDEILEALNLAQKAILNGS 257
Query: 232 KLQKDVISNE 241
K+ S
Sbjct: 258 NAYKEAFSKH 267
>gi|269926894|ref|YP_003323517.1| Polyribonucleotide nucleotidyltransferase [Thermobaculum terrenum
ATCC BAA-798]
gi|269790554|gb|ACZ42695.1| Polyribonucleotide nucleotidyltransferase [Thermobaculum terrenum
ATCC BAA-798]
Length = 733
Score = 153 bits (385), Expect = 3e-35, Method: Composition-based stats.
Identities = 43/244 (17%), Positives = 88/244 (36%), Gaps = 17/244 (6%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
+R GR ++R +S + GS L G T +++ TL EE++ + +
Sbjct: 314 VRPDGRGPKEIRPVSAEVGLLPRTHGSALFTRGQTQIISVVTLGTRREEQILDDLGMEES 373
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P STG S R G + R+L V+ + +
Sbjct: 374 KRFMHHYNFPPYSTGEIRPLRGPSRRDIGHGAL----VERSLLPVMPSEEEFPYTVRVVS 429
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V+ ++G + ++ G+ +AL D ++ + + V + + D
Sbjct: 430 EVVSSNGSSSMGSVCGSTLALMDAGVPIKAPVSGVAMGLVTGPDGKYV--------ILTD 481
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED+ D+D T+ G + +Q + + D A++ ++ +
Sbjct: 482 IQGIEDALGDMDFKVAGTEKG-VTGLQMDIKTTGITFDIMREAFEQAREGRMYILGKMLE 540
Query: 237 VISN 240
I
Sbjct: 541 AIPE 544
Score = 108 bits (270), Expect = 6e-22, Method: Composition-based stats.
Identities = 45/232 (19%), Positives = 78/232 (33%), Gaps = 26/232 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTAT---LEEKVPMWIRNTKHGWITAEYGMLP 67
R++S+ ++ A G+ LV++GDT +LTTA + + ++ G +P
Sbjct: 12 RKLSIETGRIAGQAHGAVLVQYGDTVVLTTAVRADAPSNMDFFPLTVQYEERMYAAGKIP 71
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R GR + R+ R LR + QII
Sbjct: 72 GGFIRR------EGRPSENATLAARLTDRPLRPLFPKGYKYEVQIITTVLSTDQQNEPDL 125
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
+I G A G V A G + G I++ + +
Sbjct: 126 LSIIGGSAA-------------LSISDIPFLGPVGAARVGYIDGEYILNPTADQREESLL 172
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
D T ++ V+GSA + + + D IKLQ+ +++
Sbjct: 173 DLTVAGTKD-AVIMVEGSAHE--LPESVMLGAVEFGHRMLQDTIKLQEQLVA 221
>gi|120609946|ref|YP_969624.1| polynucleotide phosphorylase/polyadenylase [Acidovorax citrulli
AAC00-1]
gi|187470931|sp|A1TLL2|PNP_ACIAC RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|120588410|gb|ABM31850.1| 3' exoribonuclease [Acidovorax citrulli AAC00-1]
Length = 758
Score = 153 bits (385), Expect = 3e-35, Method: Composition-based stats.
Identities = 43/243 (17%), Positives = 90/243 (37%), Gaps = 18/243 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +R I + V GS L G+T L +TL + + +
Sbjct: 317 RIDGRDTRTVRPIEIRNSVLPRTHGSALFTRGETQALVVSTLGTERDAQRIDALAGEFED 376
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y M P +TG + + R+ G + RAL +V+ I + +
Sbjct: 377 RFMFHYNMPPFATGEVGRMGSTKRREIGHGRL----AKRALVAVLPTKEEFPYTIRVVSE 432
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ G +++ D M+ + + + + A+ +
Sbjct: 433 ITESNGSSSMASVCGGCLSMMDAGVPMKAHVAGIAMGLIKEDNRFAVLTD---------I 483
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T +G I +Q + +++ L AK+ ++ ++
Sbjct: 484 LGDEDHLGDMDFKVAGTTAG-ITALQMDIKIQGITKEIMQVALAQAKEARLHILGKMQEA 542
Query: 238 ISN 240
+
Sbjct: 543 MGE 545
Score = 93.4 bits (230), Expect = 3e-17, Method: Composition-based stats.
Identities = 34/233 (14%), Positives = 72/233 (30%), Gaps = 31/233 (13%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT----KHGWITAEYGMLPR 68
+ + +++ A G+ LV DT +L T + + T G +P
Sbjct: 18 VVMETGEIARQATGAVLVNIDDTVVLATVVASKSAKPGQDFFPLTVDYIEKTYAAGKIPG 77
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
S R + R+I R +R + ++I + + A
Sbjct: 78 SFFKR------EAKPSELETLTSRLIDRPIRPLFPEGFYNEVHVVIHTVSLNPEVDADIA 131
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+ A G + A G + G +++ +D
Sbjct: 132 AMIAVSAA-------------LSVSGIPFNGPIGAARVGYINGEYVLNPGQTARKNSQMD 178
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKD----RIADLIKLQKDV 237
T++ ++ V+ A++ S+D + + I + +L +D
Sbjct: 179 LVVAGTEA-AVLMVESEAQQ--LSEDIMLGAVVFGHEQGRIAINAIHELVRDA 228
>gi|58582837|ref|YP_201853.1| polynucleotide phosphorylase/polyadenylase [Xanthomonas oryzae pv.
oryzae KACC10331]
gi|84624704|ref|YP_452076.1| polynucleotide phosphorylase/polyadenylase [Xanthomonas oryzae pv.
oryzae MAFF 311018]
gi|188577676|ref|YP_001914605.1| polynucleotide phosphorylase/polyadenylase [Xanthomonas oryzae pv.
oryzae PXO99A]
gi|75434649|sp|Q5GXV3|PNP_XANOR RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|123739068|sp|Q2P0X5|PNP_XANOM RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|226704832|sp|B2SVJ9|PNP_XANOP RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|58427431|gb|AAW76468.1| polynucleotide phosphorylase [Xanthomonas oryzae pv. oryzae
KACC10331]
gi|84368644|dbj|BAE69802.1| polynucleotide phosphorylase [Xanthomonas oryzae pv. oryzae MAFF
311018]
gi|188522128|gb|ACD60073.1| polyribonucleotide nucleotidyltransferase [Xanthomonas oryzae pv.
oryzae PXO99A]
Length = 704
Score = 153 bits (385), Expect = 3e-35, Method: Composition-based stats.
Identities = 43/242 (17%), Positives = 86/242 (35%), Gaps = 18/242 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
+R+ GR + +R IS V GS L G+T + TL + +V +
Sbjct: 315 VRIDGRALDTVRPISAKAGVLPRTHGSALFTRGETQAIVITTLGTARDGQVIDAVSGEYK 374
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P S G + A R+ G + R + +V+ I +
Sbjct: 375 ENFLFHYNFPPYSVGECGRFGAPKRREIGHGRL----AKRGVLAVMPSLEEFPYTIRVVS 430
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
++ +++G + A++ G+ +AL D ++ + V +G+ +
Sbjct: 431 EITESNGSSSMASVCGSSLALMDAGVPIKAPVAGIAMGLVKEGNDFVVLSD--------- 481
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T G + +Q + +++ L AK ++
Sbjct: 482 ILGDEDHLGDMDFKVAGTAEG-VSALQMDIKIEGITEEIMKQALQQAKAGRLHILGEMAH 540
Query: 237 VI 238
+
Sbjct: 541 AL 542
Score = 81.8 bits (200), Expect = 8e-14, Method: Composition-based stats.
Identities = 44/228 (19%), Positives = 79/228 (34%), Gaps = 27/228 (11%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTKHGWITAEYGMLPR 68
++L +++ A G+ +VKF DT LL TA + E + + G +P
Sbjct: 15 VTLETGEIARQAGGAVIVKFDDTVLLVTAVAAKSAREGQDFFPLTVDYQEKFYAGGRIPG 74
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
R GR + I R+I R +R + QII + D A
Sbjct: 75 GFFKR------EGRATEKETLISRLIDRPIRPLFPEDYKNEVQIIATVMSMNPDIDGDIA 128
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+ GA AL G +AA G G I++ + ++
Sbjct: 129 ALIGASAALSLAGT-------------PFNGPIAAAKVGYKNGEYILNPTVTDLKDSQLE 175
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
T + ++ V+ AE + ++ + + +I + +
Sbjct: 176 LVVAGTAN-AVLMVESEAELLS--EEVMLGAVTFGHREMQKVINIINE 220
>gi|78048389|ref|YP_364564.1| polynucleotide phosphorylase/polyadenylase [Xanthomonas campestris
pv. vesicatoria str. 85-10]
gi|325924695|ref|ZP_08186133.1| polyribonucleotide nucleotidyltransferase (polynucleotide
phosphorylase) [Xanthomonas perforans 91-118]
gi|123730263|sp|Q3BRP9|PNP_XANC5 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|78036819|emb|CAJ24512.1| polynucleotide phosphorylase [Xanthomonas campestris pv.
vesicatoria str. 85-10]
gi|325544901|gb|EGD16246.1| polyribonucleotide nucleotidyltransferase (polynucleotide
phosphorylase) [Xanthomonas perforans 91-118]
Length = 704
Score = 153 bits (385), Expect = 3e-35, Method: Composition-based stats.
Identities = 43/242 (17%), Positives = 86/242 (35%), Gaps = 18/242 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
+R+ GR + +R IS V GS L G+T + TL + +V +
Sbjct: 315 VRIDGRALDTVRPISAKAGVLPRTHGSALFTRGETQAIVITTLGTARDGQVIDAVSGEYK 374
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P S G + A R+ G + R + +V+ I +
Sbjct: 375 ENFLFHYNFPPYSVGECGRFGAPKRREIGHGRL----AKRGVLAVMPTLEEFPYTIRVVS 430
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
++ +++G + A++ G+ +AL D ++ + V +G+ +
Sbjct: 431 EITESNGSSSMASVCGSSLALMDAGVPIKAPVAGIAMGLVKEGNDFVVLSD--------- 481
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T G + +Q + +++ L AK ++
Sbjct: 482 ILGDEDHLGDMDFKVAGTAEG-VSALQMDIKIEGITEEIMKQALQQAKAGRLHILGEMAH 540
Query: 237 VI 238
+
Sbjct: 541 AL 542
Score = 81.0 bits (198), Expect = 1e-13, Method: Composition-based stats.
Identities = 45/228 (19%), Positives = 79/228 (34%), Gaps = 27/228 (11%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTKHGWITAEYGMLPR 68
++L +++ A G+ +VKF DT LL TA + E + + G +P
Sbjct: 15 VTLETGEIARQAGGAVIVKFDDTVLLVTAVAAKSAREGQDFFPLTVDYQEKFYAGGRIPG 74
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
R GR + I R+I R +R + QII + D A
Sbjct: 75 GFFKR------EGRATEKETLISRLIDRPIRPLFPEDYKNEVQIIATVMSMNPDIDGDIA 128
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+ GA AL KG + A G G I++ E ++
Sbjct: 129 ALIGASAALSLAGT-------------PFKGPIGAAKVGYKNGEYILNPTVTELKDSQLE 175
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
T + ++ V+ AE + ++ + + +I + +
Sbjct: 176 LVVAGTAN-AVLMVESEAELLS--EEVMLGAVTFGHREMQKVINVINE 220
>gi|315282187|ref|ZP_07870650.1| polyribonucleotide nucleotidyltransferase [Listeria marthii FSL
S4-120]
gi|313614173|gb|EFR87854.1| polyribonucleotide nucleotidyltransferase [Listeria marthii FSL
S4-120]
Length = 723
Score = 153 bits (385), Expect = 3e-35, Method: Composition-based stats.
Identities = 51/243 (20%), Positives = 89/243 (36%), Gaps = 18/243 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
+R GR+ N++R +S + GS L G T L+ TL E ++ + ++
Sbjct: 316 IRPDGRKVNEIRPLSSEVGMLPRVHGSGLFTRGQTQALSVCTLAPLREHQIIDGLGTEEY 375
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y S G R A R+ G RAL+ V+ I +
Sbjct: 376 KRFMHHYNFPQFSVGETGPRRAPGRREIGHGALG----ERALQYVIPSEEEFPYTIRLVS 431
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V++++G + A+I G+ +A+ D ++ + V G I
Sbjct: 432 EVLESNGSSSQASICGSTLAMLDAGVPIKAPVAGIAMGLVKLGDDYTILSD--------- 482
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T G I +Q + S+ L AK+ +++
Sbjct: 483 IQGMEDHFGDMDFKVAGTKDG-ITALQMDIKIDGLSRQILDEALTQAKEGRLHILEHLTS 541
Query: 237 VIS 239
IS
Sbjct: 542 TIS 544
Score = 111 bits (276), Expect = 1e-22, Method: Composition-based stats.
Identities = 44/230 (19%), Positives = 83/230 (36%), Gaps = 26/230 (11%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKV---PMWIRNTKHGWITAEYGMLPRS 69
+S+ ++K A G+ L+++GDT +LT A +K + + G +P
Sbjct: 16 LSVEVGQLAKQASGAALIRYGDTVVLTAAVGSKKPRPGDFFPLTVNYEEKMYSVGKVPGG 75
Query: 70 TGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAA 129
R GR R+ R+I R +R + QI + D AA
Sbjct: 76 FLKR------EGRPSDRATLTARLIDRPIRPLFAEGFRNEVQITSTVFSVDQDCSPEMAA 129
Query: 130 ITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDA 189
+ G+ VA +G +A + G + G +++ + D+
Sbjct: 130 MLGSSVA-------------LVISDIPFEGPIAGVDVGRIDGKYVINPTIEQAEKSDISL 176
Query: 190 NFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
T I V+ A+ S++ + + I L + Q+ +I+
Sbjct: 177 TVAGTYD-AINMVEAGAKE--VSEEAMLEAIMFGHEEIKRLCEFQQQIIA 223
>gi|326316095|ref|YP_004233767.1| polyribonucleotide nucleotidyltransferase [Acidovorax avenae subsp.
avenae ATCC 19860]
gi|323372931|gb|ADX45200.1| polyribonucleotide nucleotidyltransferase [Acidovorax avenae subsp.
avenae ATCC 19860]
Length = 759
Score = 153 bits (385), Expect = 3e-35, Method: Composition-based stats.
Identities = 43/243 (17%), Positives = 90/243 (37%), Gaps = 18/243 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +R I + V GS L G+T L +TL + + +
Sbjct: 317 RIDGRDTRTVRPIEIRSSVLPRTHGSALFTRGETQALVVSTLGTERDAQRIDALAGEFED 376
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y M P +TG + + R+ G + RAL +V+ I + +
Sbjct: 377 RFMFHYNMPPFATGEVGRMGSTKRREIGHGRL----AKRALVAVLPTKEEFPYTIRVVSE 432
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ G +++ D M+ + + + + A+ +
Sbjct: 433 ITESNGSSSMASVCGGCLSMMDAGVPMKAHVAGIAMGLIKEDNRFAVLTD---------I 483
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T +G I +Q + +++ L AK+ ++ ++
Sbjct: 484 LGDEDHLGDMDFKVAGTTAG-ITALQMDIKIQGITKEIMQVALAQAKEARLHILGKMQEA 542
Query: 238 ISN 240
+
Sbjct: 543 MGE 545
Score = 90.7 bits (223), Expect = 2e-16, Method: Composition-based stats.
Identities = 33/233 (14%), Positives = 74/233 (31%), Gaps = 31/233 (13%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT----KHGWITAEYGMLPR 68
+ + +++ A G+ LV+ T +L T + + T G +P
Sbjct: 18 VVMETGEIARQANGAVLVEIDGTVILATVAASKSAKPGQDFFPLTVDYIEKTYAAGKIPG 77
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
S R + R+I R +R + L +++ + + A
Sbjct: 78 SFFKR------EAKPSEHETLTSRLIDRPIRPLFPEGFLNEVHVVVHTVSLNPEVDADIA 131
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+ G A G + A G + G +++ +D
Sbjct: 132 AMIGVSAA-------------LAISGIPFAGPIGAARVGYINGEYVLNPGQTARKNSQMD 178
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKD----RIADLIKLQKDV 237
T++ ++ V+ A++ S+D + + I + +L ++
Sbjct: 179 LVVAGTEA-AVLMVESEAQQ--LSEDIMLGGVVFGHEQANIAINAIHELVREA 228
>gi|289665195|ref|ZP_06486776.1| polynucleotide phosphorylase/polyadenylase [Xanthomonas campestris
pv. vasculorum NCPPB702]
gi|289667359|ref|ZP_06488434.1| polynucleotide phosphorylase/polyadenylase [Xanthomonas campestris
pv. musacearum NCPPB4381]
Length = 704
Score = 153 bits (385), Expect = 3e-35, Method: Composition-based stats.
Identities = 43/242 (17%), Positives = 86/242 (35%), Gaps = 18/242 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
+R+ GR + +R IS V GS L G+T + TL + +V +
Sbjct: 315 VRIDGRALDTVRPISAKAGVLPRTHGSALFTRGETQAIVITTLGTARDGQVIDAVSGEYK 374
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P S G + A R+ G + R + +V+ I +
Sbjct: 375 ENFLFHYNFPPYSVGECGRFGAPKRREIGHGRL----AKRGVLAVMPSLEEFPYTIRVVS 430
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
++ +++G + A++ G+ +AL D ++ + V +G+ +
Sbjct: 431 EITESNGSSSMASVCGSSLALMDAGVPIKAPVAGIAMGLVKEGNDFVVLSD--------- 481
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T G + +Q + +++ L AK ++
Sbjct: 482 ILGDEDHLGDMDFKVAGTAEG-VSALQMDIKIEGITEEIMKQALQQAKAGRLHILGEMAH 540
Query: 237 VI 238
+
Sbjct: 541 AL 542
Score = 81.4 bits (199), Expect = 9e-14, Method: Composition-based stats.
Identities = 45/228 (19%), Positives = 79/228 (34%), Gaps = 27/228 (11%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTKHGWITAEYGMLPR 68
++L +++ A G+ +VKF DT LL TA + E + + G +P
Sbjct: 15 VTLETGEIARQAGGAVIVKFDDTVLLVTAVAAKSAREGQDFFPLTVDYQEKFYAGGRIPG 74
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
R GR + I R+I R +R + QII + D A
Sbjct: 75 GFFKR------EGRATEKETLISRLIDRPIRPLFPEDYKNEVQIIATVMSMNPDIDGDIA 128
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+ GA AL G +AA G G I++ E ++
Sbjct: 129 ALIGASAALSLAGT-------------PFNGPIAAAKVGYKNGEYILNPTVTELKDSQLE 175
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
T + ++ V+ AE + ++ + + +I + +
Sbjct: 176 LVVAGTAN-AVLMVESEAELLS--EEVMLGAVTFGHREMQKVINIINE 220
>gi|237798567|ref|ZP_04587028.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas syringae
pv. oryzae str. 1_6]
gi|331021420|gb|EGI01477.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas syringae
pv. oryzae str. 1_6]
Length = 701
Score = 153 bits (385), Expect = 3e-35, Method: Composition-based stats.
Identities = 45/243 (18%), Positives = 92/243 (37%), Gaps = 18/243 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +R +++ V GS L G+T L ATL + ++ + K
Sbjct: 316 RIDGRDTRTVRPLNIEVGVLPKTHGSALFTRGETQALVVATLGTARDAQLLDTLEGEKKD 375
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + R+ G + R++++++ + + I + +
Sbjct: 376 PFMLHYNFPPFSVGECGRMGGAGRREIGHGRL----ARRSVQAMLPGADVFPYTIRVVSE 431
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ GA +AL D M+ + V +G AI +
Sbjct: 432 ITESNGSSSMASVCGASLALMDAGVPMKAPVAGIAMGLVKEGEKFAILTD---------I 482
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T G + +Q + +++ L A + +++ +
Sbjct: 483 LGDEDHLGDMDFKVAGTSKG-VTALQMDIKIKGITEEIMEIALGQALEARLNILGQMNQI 541
Query: 238 ISN 240
I
Sbjct: 542 IGQ 544
Score = 97.6 bits (241), Expect = 1e-18, Method: Composition-based stats.
Identities = 36/234 (15%), Positives = 71/234 (30%), Gaps = 29/234 (12%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTH-LLTTATLEEKVP----MWIRNTKHGWITAEYGMLP 67
+ L +++ A G+ LV D +L T + + + + T G +P
Sbjct: 15 VILETGRIARQASGAVLVTVDDDVSVLVTVVGAKHADAGKGFFPLSVHYQEKTYAAGKIP 74
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R GR + R+I R +R + + Q++
Sbjct: 75 GGFFKR------EGRPSEKETLTSRLIDRPIRPLFPEGFMNEVQVVCTVVSTSKKIDPDI 128
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY-PIVDLDYGEDSTID 186
AA+ G A G V A +++ Y +
Sbjct: 129 AAMIGTSAA-------------LAISGIPFDGPVGAARVAFHESTGYLLNPTYEQLQASS 175
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
+D T ++ V+ A+ ++D + A D +I K++ +
Sbjct: 176 LDMVVAGTSE-AVLMVESEAKE--LTEDQMLGAVLFAHDEFQVVINAIKELAAE 226
>gi|166712594|ref|ZP_02243801.1| polynucleotide phosphorylase/polyadenylase [Xanthomonas oryzae pv.
oryzicola BLS256]
Length = 704
Score = 153 bits (385), Expect = 3e-35, Method: Composition-based stats.
Identities = 43/242 (17%), Positives = 86/242 (35%), Gaps = 18/242 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
+R+ GR + +R IS V GS L G+T + TL + +V +
Sbjct: 315 VRIDGRALDTVRPISAKAGVLPRTHGSALFTRGETQAIVITTLGTARDGQVIDAVSGEYK 374
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P S G + A R+ G + R + +V+ I +
Sbjct: 375 ENFLFHYNFPPYSVGECGRFGAPKRREIGHGRL----AKRGVLAVMPSLEEFPYTIRVVS 430
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
++ +++G + A++ G+ +AL D ++ + V +G+ +
Sbjct: 431 EITESNGSSSMASVCGSSLALMDAGVPIKAPVAGIAMGLVKEGNDFVVLSD--------- 481
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T G + +Q + +++ L AK ++
Sbjct: 482 ILGDEDHLGDMDFKVAGTAEG-VSALQMDIKIEGITEEIMKQALQQAKAGRLHILGEMAH 540
Query: 237 VI 238
+
Sbjct: 541 AL 542
Score = 81.4 bits (199), Expect = 9e-14, Method: Composition-based stats.
Identities = 45/228 (19%), Positives = 79/228 (34%), Gaps = 27/228 (11%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTKHGWITAEYGMLPR 68
++L +++ A G+ +VKF DT LL TA + E + + G +P
Sbjct: 15 VTLETGEIARQAGGAVIVKFDDTVLLVTAVAAKSAREGQDFFPLTVDYQEKFYAGGRIPG 74
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
R GR + I R+I R +R + QII + D A
Sbjct: 75 GFFKR------EGRATEKETLISRLIDRPIRPLFPEDYKNEVQIIATVMSMNPDIDGDIA 128
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+ GA AL G +AA G G I++ E ++
Sbjct: 129 ALIGASAALSLAGT-------------PFNGPIAAAKVGYKNGEYILNPTVTELKDSQLE 175
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
T + ++ V+ AE + ++ + + +I + +
Sbjct: 176 LVVAGTAN-AVLMVESEAELLS--EEVMLGAVTFGHREMQKVINIINE 220
>gi|329122064|ref|ZP_08250672.1| polyribonucleotide nucleotidyltransferase [Dialister micraerophilus
DSM 19965]
gi|327466871|gb|EGF12387.1| polyribonucleotide nucleotidyltransferase [Dialister micraerophilus
DSM 19965]
Length = 697
Score = 152 bits (384), Expect = 3e-35, Method: Composition-based stats.
Identities = 45/244 (18%), Positives = 85/244 (34%), Gaps = 18/244 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
+R GR +++R I+ + GS L G T LT TL E ++ +
Sbjct: 311 IRPDGRALDEIRPITCEVGMIPRTHGSALFTRGQTQALTITTLAPMNETQIIDDLTLVNE 370
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
+Y G R+ G RAL V+ I +
Sbjct: 371 KRYIHQYNFPSYCVGETKSSRGPGRREIGHGAL----AERALEPVIPSVDEFPYAIRVVS 426
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
++++++G + A++ G+ ++L + + + V +G + D
Sbjct: 427 EILESNGSSSQASVCGSTMSLMNAGVPIHAPVAGIAMGLVNEGE---------HFTILTD 477
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED+ D+D T G I +Q + S++ A L A ++ +
Sbjct: 478 IQGMEDALGDMDFKVAGTAKG-ITAIQMDIKIHGLSREILMAALKQAHKGRMFILGKIAE 536
Query: 237 VISN 240
IS
Sbjct: 537 CISK 540
Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats.
Identities = 45/236 (19%), Positives = 85/236 (36%), Gaps = 28/236 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKHGWITAEYGML 66
R + + ++K A GS LV++GDT +L T E + + G +
Sbjct: 12 RPLIIETGKMAKQASGSVLVRYGDTVVLVATTWSKEPREGTDFFPLTVDYEEKMYSVGKM 71
Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
P R GR G + R+I R +R + D ++ + D
Sbjct: 72 PGGFLRR------EGRPGNSAVLNARLIDRPIRPLFDKRCRHDVHVVATVLSVDYDNAPE 125
Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
+ G ++ G VA + G + G +V+ +
Sbjct: 126 LCGLLG-------------ASASIAISDIPWDGPVAGVRVGKVDGEFVVNPTQEQLERST 172
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNEV 242
++ +++ I+ V+G A+ A S++ + A I L++ QK +I +V
Sbjct: 173 MNITVAGSET-AILMVEGGAKEA--SEEEVLDAIMYAHTVIKQLVEFQKKII-EKV 224
>gi|323464611|gb|ADX76764.1| polyribonucleotide nucleotidyltransferase [Staphylococcus
pseudintermedius ED99]
Length = 697
Score = 152 bits (384), Expect = 3e-35, Method: Composition-based stats.
Identities = 47/244 (19%), Positives = 90/244 (36%), Gaps = 18/244 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
+R GR+ +++R +S + A GS L G T L+ TL E ++ + +H
Sbjct: 318 IRPDGRKPDEIRPLSSEVGLLPRAHGSGLFTRGQTQALSVLTLGSISEYQIIDGLGEEEH 377
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y S G A R+ G RAL+ ++ + I
Sbjct: 378 KRFMHHYNFPNFSVGETGPVRAPGRREIGHGALG----ERALKYIIPDEKTFPYTVRIVS 433
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V++++G + A+I G+ +AL D ++ + V + + D
Sbjct: 434 EVLESNGSSSQASICGSTLALMDAGVPIKAPVAGIAMGLVTREE---------SYTILTD 484
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED+ D+D T G I +Q + +++ L A+ +++
Sbjct: 485 IQGMEDALGDMDFKVAGTTEG-ITAIQMDIKIDGLTKEVIEEALEQARKGRLAILEHMMQ 543
Query: 237 VISN 240
I
Sbjct: 544 TIDQ 547
Score = 114 bits (285), Expect = 9e-24, Method: Composition-based stats.
Identities = 40/231 (17%), Positives = 84/231 (36%), Gaps = 26/231 (11%)
Query: 13 EISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKV---PMWIRNTKHGWITAEYGMLPR 68
+++ ++K A G+ LV++GDT +L+TAT ++ + + G +P
Sbjct: 16 PLTIETGQLAKQANGAVLVRYGDTVVLSTATASKEPRDGDFFPLTVNYEEKMYAAGKIPG 75
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
R GR G + R+I R +R + QII + A
Sbjct: 76 GFKKR------EGRPGDEATLTARLIDRPIRPLFPDGYRHDVQIINTVLSADPNCSPEMA 129
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+ G+ +A +G +A ++ G + G +++ + + +D
Sbjct: 130 AMIGSSMA-------------LSVSDIPFQGPIAGVNVGYVDGEYVINPNLEQREKSRLD 176
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
+ V+ A ++ + + I L Q+++I+
Sbjct: 177 LEVAGHKD-AVNMVEAGASE--ITEAEMLEAILFGHEEIKRLCAFQEEIIA 224
>gi|313608969|gb|EFR84717.1| polyribonucleotide nucleotidyltransferase [Listeria monocytogenes
FSL F2-208]
Length = 424
Score = 152 bits (384), Expect = 3e-35, Method: Composition-based stats.
Identities = 51/243 (20%), Positives = 89/243 (36%), Gaps = 18/243 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
+R GR+ N++R +S + GS L G T L+ TL E ++ + ++
Sbjct: 17 IRPDGRKVNEIRPLSSEVGMLPRVHGSGLFTRGQTQALSVCTLAPLREHQIIDGLGTEEY 76
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y S G R A R+ G RAL+ V+ I +
Sbjct: 77 KRFMHHYNFPQFSVGETGPRRAPGRREIGHGALG----ERALQYVIPSEEEFPYTIRLVS 132
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V++++G + A+I G+ +A+ D ++ + V G I
Sbjct: 133 EVLESNGSSSQASICGSTLAMLDAGVPIKAPVAGIAMGLVKLGDDYTILSD--------- 183
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T G I +Q + S+ L AK+ +++
Sbjct: 184 IQGMEDHFGDMDFKVAGTKDG-ITALQMDIKIDGLSRQILDEALTQAKEGRLHILEHLTS 242
Query: 237 VIS 239
IS
Sbjct: 243 TIS 245
>gi|257096736|sp|B6ENE6|PNP_ALISL RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
Length = 709
Score = 152 bits (384), Expect = 3e-35, Method: Composition-based stats.
Identities = 44/242 (18%), Positives = 92/242 (38%), Gaps = 18/242 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR+++ +R + + V GS L G+T L TATL + ++ + K
Sbjct: 316 RIDGREKDMVRALDVRTGVLPRTHGSALFTRGETQALVTATLGTQRDAQIIDSLMGEKKD 375
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P G + R+ G + R + +V+ + + +
Sbjct: 376 HFLLHYNFPPYCVGETGFVGSPKRREIGHGKL----AKRGIAAVMPSVEEFPYTVRVVSE 431
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ G +AL D ++ + V +G + +
Sbjct: 432 ITESNGSSSMASVCGTSLALMDAGVPIKASVAGIAMGLVKEGDDFVVLSD---------I 482
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T++G I +Q + +++ LN A+ ++ + +
Sbjct: 483 LGDEDHLGDMDFKVAGTNAG-ITALQMDIKIEGITKEIMQIALNQAQGARKHILTVMDEA 541
Query: 238 IS 239
IS
Sbjct: 542 IS 543
Score = 86.8 bits (213), Expect = 2e-15, Method: Composition-based stats.
Identities = 34/228 (14%), Positives = 74/228 (32%), Gaps = 27/228 (11%)
Query: 14 ISLTRRV-SKYAEGSCLVKFGDTHLLTTATLEEKV----PMWIRNTKHGWITAEYGMLPR 68
++L V ++ A + + DT + + +++ + + T G +P
Sbjct: 17 VTLETGVMARQATAAVMASMDDTSVFVSVVAKKEAVAGQDFFPLTVNYQERTYAAGKIPG 76
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
R GR R+I R +R + + Q+I I D
Sbjct: 77 GFFKR------EGRPSEGETLTARLIDRPIRPLFPSAFKNEVQVIATVVSINPDVNPDMI 130
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
+ AL G + A G + G +++ E + +D
Sbjct: 131 TMIATSAALSIAGV-------------PFNGPIGAARVGHINGELVLNPSNTELANSKLD 177
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
T++ ++ V+ +E S++ + + D+ +IK +
Sbjct: 178 LVVSGTEA-AVLMVE--SEADNLSEEEMLSAVVFGHDQQQVVIKAINE 222
>gi|51246460|ref|YP_066344.1| polynucleotide phosphorylase/polyadenylase [Desulfotalea
psychrophila LSv54]
gi|81641366|sp|Q6AJY9|PNP_DESPS RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|50877497|emb|CAG37337.1| probable polyribonucleotide nucleotidyltransferase [Desulfotalea
psychrophila LSv54]
Length = 692
Score = 152 bits (384), Expect = 3e-35, Method: Composition-based stats.
Identities = 47/240 (19%), Positives = 90/240 (37%), Gaps = 10/240 (4%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+R+ GR +++R+IS GS L G+T L TATL + T +G +
Sbjct: 312 VRIGGRAWDEIRDISSETEYLPKTHGSALFTRGETQALVTATLGSERDKQRVETLNGETS 371
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
+ + V R + R L +V+ I + ++++
Sbjct: 372 RRFMLHYNFPPYCVGEARFLRGPSRRDIGHGTLATRGLEAVLPSEEDFPYAIRVVSEILE 431
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
++G + A++ G +A+ D ++ + + + +G AI +
Sbjct: 432 SNGSSSMASVCGGSMAMMDAGVPLKRPVSGIAMGLIKEGEGVAILSD---------ILGD 482
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
ED D+D V T G I +Q + S+D L+ AK +++ I+
Sbjct: 483 EDHLGDMDFKVVGTCDG-ITALQMDIKIDGVSRDIMSNALDQAKRGRMHILEEMSKGIAE 541
Score = 76.0 bits (185), Expect = 5e-12, Method: Composition-based stats.
Identities = 42/235 (17%), Positives = 72/235 (30%), Gaps = 40/235 (17%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLT-----------TATLEEKVPMWIRNTKHGWITA 61
IS+ ++K A GS ++ T V ++ +
Sbjct: 14 ISIETGKLAKQASGSIVIS-------CGGTVVLVTVVGAKTSNPNVDFLPLTIEYQEKFS 66
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
G +P + R GR + R+I R LR + Q+I
Sbjct: 67 AVGRVPGNYFRR-----EIGRPSDQEVLTCRIIDRPLRPLFPEGYRSETQVIATVLSADQ 121
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
A+TGA A G VA + G +++ + E
Sbjct: 122 VNSPDVLALTGASAA-------------LSISHIPFAGPVAGGRIAYIDGKYVLNPTFAE 168
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ +D T + IV V+ + S+D + A + + LI LQ +
Sbjct: 169 LESSSMDLMVACTRN-AIVMVE--GKADELSEDEILGAIFFAFENLQPLINLQDE 220
>gi|46907557|ref|YP_013946.1| polynucleotide phosphorylase/polyadenylase [Listeria monocytogenes
serotype 4b str. F2365]
gi|47094124|ref|ZP_00231847.1| polyribonucleotide nucleotidyltransferase [Listeria monocytogenes
str. 4b H7858]
gi|226223932|ref|YP_002758039.1| polynucleotide phosphorylase [Listeria monocytogenes Clip81459]
gi|81403374|sp|Q71ZZ1|PNP_LISMF RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|259534135|sp|C1L2N7|PNP_LISMC RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|46880825|gb|AAT04123.1| polyribonucleotide nucleotidyltransferase [Listeria monocytogenes
serotype 4b str. F2365]
gi|47017509|gb|EAL08319.1| polyribonucleotide nucleotidyltransferase [Listeria monocytogenes
str. 4b H7858]
gi|225876394|emb|CAS05103.1| polynucleotide phosphorylase (PNPase) [Listeria monocytogenes
serotype 4b str. CLIP 80459]
Length = 723
Score = 152 bits (384), Expect = 3e-35, Method: Composition-based stats.
Identities = 51/243 (20%), Positives = 89/243 (36%), Gaps = 18/243 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
+R GR+ N++R +S + GS L G T L+ TL E ++ + ++
Sbjct: 316 IRPDGRKVNEIRPLSSEVGMLPRVHGSGLFTRGQTQALSVCTLAPLREHQIIDGLGTEEY 375
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y S G R A R+ G RAL+ V+ I +
Sbjct: 376 KRFMHHYNFPQFSVGETGPRRAPGRREIGHGALG----ERALQYVIPSEEEFPYTIRLVS 431
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V++++G + A+I G+ +A+ D ++ + V G I
Sbjct: 432 EVLESNGSSSQASICGSTLAMLDAGVPIKAPVAGIAMGLVKLGDDYTILSD--------- 482
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T G I +Q + S+ L AK+ +++
Sbjct: 483 IQGMEDHFGDMDFKVAGTKDG-ITALQMDIKIDGLSRQILDEALTQAKEGRLHILEHLTS 541
Query: 237 VIS 239
IS
Sbjct: 542 TIS 544
Score = 111 bits (276), Expect = 1e-22, Method: Composition-based stats.
Identities = 44/230 (19%), Positives = 83/230 (36%), Gaps = 26/230 (11%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKV---PMWIRNTKHGWITAEYGMLPRS 69
+S+ ++K A G+ L+++GDT +LT A +K + + G +P
Sbjct: 16 LSVEVGQLAKQASGAALIRYGDTVVLTAAVGSKKPRPGDFFPLTVNYEEKMYSVGKVPGG 75
Query: 70 TGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAA 129
R GR R+ R+I R +R + QI + D AA
Sbjct: 76 FLKR------EGRPSDRATLTARLIDRPIRPLFAEGFRNEVQITSTVFSVDQDCSPEMAA 129
Query: 130 ITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDA 189
+ G+ VA +G +A + G + G +++ + D+
Sbjct: 130 MLGSSVA-------------LVISDIPFEGPIAGVDVGRIDGKYVINPTIEQAEKSDISL 176
Query: 190 NFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
T I V+ A+ S++ + + I L + Q+ +I+
Sbjct: 177 TVAGTYD-AINMVEAGAKE--VSEEAMLEAIMFGHEEIKRLCEFQQQIIA 223
>gi|16803371|ref|NP_464856.1| polynucleotide phosphorylase/polyadenylase [Listeria monocytogenes
EGD-e]
gi|47095916|ref|ZP_00233519.1| polyribonucleotide nucleotidyltransferase [Listeria monocytogenes
str. 1/2a F6854]
gi|224501726|ref|ZP_03670033.1| polynucleotide phosphorylase/polyadenylase [Listeria monocytogenes
FSL R2-561]
gi|254827592|ref|ZP_05232279.1| polyribonucleotide nucleotidyltransferase [Listeria monocytogenes
FSL N3-165]
gi|254898504|ref|ZP_05258428.1| polynucleotide phosphorylase/polyadenylase [Listeria monocytogenes
J0161]
gi|254912005|ref|ZP_05262017.1| polynucleotide phosphorylase/polyadenylase [Listeria monocytogenes
J2818]
gi|254936332|ref|ZP_05268029.1| polyribonucleotide nucleotidyltransferase [Listeria monocytogenes
F6900]
gi|284801716|ref|YP_003413581.1| polynucleotide phosphorylase/polyadenylase [Listeria monocytogenes
08-5578]
gi|284994858|ref|YP_003416626.1| polynucleotide phosphorylase/polyadenylase [Listeria monocytogenes
08-5923]
gi|81509180|sp|Q8Y7F1|PNP_LISMO RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|16410747|emb|CAC99409.1| polynucleotide phosphorylase (PNPase) [Listeria monocytogenes
EGD-e]
gi|47015662|gb|EAL06592.1| polyribonucleotide nucleotidyltransferase [Listeria monocytogenes
str. 1/2a F6854]
gi|258599969|gb|EEW13294.1| polyribonucleotide nucleotidyltransferase [Listeria monocytogenes
FSL N3-165]
gi|258608922|gb|EEW21530.1| polyribonucleotide nucleotidyltransferase [Listeria monocytogenes
F6900]
gi|284057278|gb|ADB68219.1| polynucleotide phosphorylase/polyadenylase [Listeria monocytogenes
08-5578]
gi|284060325|gb|ADB71264.1| polynucleotide phosphorylase/polyadenylase [Listeria monocytogenes
08-5923]
gi|293589970|gb|EFF98304.1| polynucleotide phosphorylase/polyadenylase [Listeria monocytogenes
J2818]
Length = 723
Score = 152 bits (384), Expect = 3e-35, Method: Composition-based stats.
Identities = 51/243 (20%), Positives = 89/243 (36%), Gaps = 18/243 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
+R GR+ N++R +S + GS L G T L+ TL E ++ + ++
Sbjct: 316 IRPDGRKVNEIRPLSSEVGMLPRVHGSGLFTRGQTQALSVCTLAPLREHQIIDGLGTEEY 375
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y S G R A R+ G RAL+ V+ I +
Sbjct: 376 KRFMHHYNFPQFSVGETGPRRAPGRREIGHGALG----ERALQYVIPSEEEFPYTIRLVS 431
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V++++G + A+I G+ +A+ D ++ + V G I
Sbjct: 432 EVLESNGSSSQASICGSTLAMLDAGVPIKAPVAGIAMGLVKLGDDYTILSD--------- 482
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T G I +Q + S+ L AK+ +++
Sbjct: 483 IQGMEDHFGDMDFKVAGTKDG-ITALQMDIKIDGLSRQILDEALTQAKEGRLHILEHLTS 541
Query: 237 VIS 239
IS
Sbjct: 542 TIS 544
Score = 111 bits (276), Expect = 1e-22, Method: Composition-based stats.
Identities = 44/230 (19%), Positives = 83/230 (36%), Gaps = 26/230 (11%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKV---PMWIRNTKHGWITAEYGMLPRS 69
+S+ ++K A G+ L+++GDT +LT A +K + + G +P
Sbjct: 16 LSVEVGQLAKQASGAALIRYGDTVVLTAAVGSKKPRPGDFFPLTVNYEEKMYSVGKVPGG 75
Query: 70 TGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAA 129
R GR R+ R+I R +R + QI + D AA
Sbjct: 76 FLKR------EGRPSDRATLTARLIDRPIRPLFAEGFRNEVQITSTVFSVDQDCSPEMAA 129
Query: 130 ITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDA 189
+ G+ VA +G +A + G + G +++ + D+
Sbjct: 130 MLGSSVA-------------LVISDIPFEGPIAGVDVGRIDGKYVINPTIEQAEKSDISL 176
Query: 190 NFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
T I V+ A+ S++ + + I L + Q+ +I+
Sbjct: 177 TVAGTYD-AINMVEAGAKE--VSEEAMLEAIMFGHEEIKRLCEFQQQIIA 223
>gi|319941417|ref|ZP_08015745.1| polyribonucleotide nucleotidyltransferase [Sutterella
wadsworthensis 3_1_45B]
gi|319805037|gb|EFW01867.1| polyribonucleotide nucleotidyltransferase [Sutterella
wadsworthensis 3_1_45B]
Length = 707
Score = 152 bits (384), Expect = 3e-35, Method: Composition-based stats.
Identities = 46/239 (19%), Positives = 96/239 (40%), Gaps = 18/239 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +R I + + V GS L G+T L T TL +E++ + +H
Sbjct: 322 RIDGRDTRTVRPIEIRQGVLPRTHGSALFTRGETQALVTTTLGTKQDEQIIDGLCEEQHD 381
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y M P +TG + + R+ G + RAL++V+ + + +
Sbjct: 382 RFMLHYNMPPFATGETGRVGSPKRREIGHGRL----AKRALKAVLPSPEEFQYTLRVVSE 437
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ G +++ D ++D + + +G+ A+ +
Sbjct: 438 ICESNGSSSMASVCGGCLSMLDAGVPLKDYVAGVAMGLIKEGNRFAVLTD---------I 488
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
ED D+D T++G + +Q + + + A L A D ++ +
Sbjct: 489 LGDEDHLGDMDFKVAGTENG-VTALQMDIKIEGITPEIMQAALAQAHDGRQHILSRMHE 546
Score = 95.3 bits (235), Expect = 7e-18, Method: Composition-based stats.
Identities = 34/233 (14%), Positives = 73/233 (31%), Gaps = 27/233 (11%)
Query: 13 EISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT----KHGWITAEYGMLP 67
+++L +++ A G+ + + DT +L T +++ + T G +P
Sbjct: 17 DVTLETGEIARQATGAVICRMDDTVVLATVVCKKEAKPGQDFFPLTVDYIEKTYAAGRIP 76
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R GR + R+I R +R + Q+II
Sbjct: 77 GGFFKR------EGRPSEKETLTSRLIDRPIRPLFPDGFFNEVQVIIHVLSADPAVDPDI 130
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
A+ GA A +G + A G + +V+ + T +
Sbjct: 131 PAMLGASAA-------------LAVSGIPFRGPIGACRVGYIDDKFVVNPTTEQLKTSRL 177
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
D T ++ V+ A+ + + + I ++++
Sbjct: 178 DLVVAGTQR-AVLMVESEADI--LPEKTMLDAVVFGHREMQVAINAINELVAK 227
>gi|116872762|ref|YP_849543.1| polynucleotide phosphorylase/polyadenylase [Listeria welshimeri
serovar 6b str. SLCC5334]
gi|123460999|sp|A0AID2|PNP_LISW6 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|116741640|emb|CAK20764.1| polynucleotide phosphorylase (PNPase) [Listeria welshimeri serovar
6b str. SLCC5334]
Length = 723
Score = 152 bits (384), Expect = 3e-35, Method: Composition-based stats.
Identities = 51/243 (20%), Positives = 89/243 (36%), Gaps = 18/243 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
+R GR+ N++R +S + GS L G T L+ TL E ++ + ++
Sbjct: 316 IRPDGRKVNEIRPLSSEVGMLPRVHGSGLFTRGQTQALSVCTLAPLREHQIIDGLGTEEY 375
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y S G R A R+ G RAL+ V+ I +
Sbjct: 376 KRFMHHYNFPQFSVGETGPRRAPGRREIGHGALG----ERALQYVIPSEEDFPYTIRLVS 431
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V++++G + A+I G+ +A+ D ++ + V G I
Sbjct: 432 EVLESNGSSSQASICGSTLAMLDAGVPIKAPVAGIAMGLVKLGDDYTILSD--------- 482
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T G I +Q + S+ L AK+ +++
Sbjct: 483 IQGMEDHFGDMDFKVAGTKDG-ITALQMDIKIDGLSRQILDEALTQAKEGRLHILEHLTS 541
Query: 237 VIS 239
IS
Sbjct: 542 TIS 544
Score = 111 bits (276), Expect = 1e-22, Method: Composition-based stats.
Identities = 44/230 (19%), Positives = 83/230 (36%), Gaps = 26/230 (11%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKV---PMWIRNTKHGWITAEYGMLPRS 69
+S+ ++K A G+ L+++GDT +LT A +K + + G +P
Sbjct: 16 LSVEVGQLAKQASGAALIRYGDTVVLTAAVGSKKPRPGDFFPLTVNYEEKMYSVGKVPGG 75
Query: 70 TGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAA 129
R GR R+ R+I R +R + QI + D AA
Sbjct: 76 FLKR------EGRPSDRATLTARLIDRPIRPLFAEGFRNEVQITSTVFSVDQDCSPEMAA 129
Query: 130 ITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDA 189
+ G+ VA +G +A + G + G +++ + D+
Sbjct: 130 MLGSSVA-------------LVISDIPFEGPIAGVDVGRIDGKYVINPTIEQAEKSDISL 176
Query: 190 NFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
T I V+ A+ S++ + + I L + Q+ +I+
Sbjct: 177 TVAGTYD-AINMVEAGAKE--VSEEAMLEAIMFGHEEIKRLCEFQQQIIA 223
>gi|28198126|ref|NP_778440.1| polynucleotide phosphorylase/polyadenylase [Xylella fastidiosa
Temecula1]
gi|28056186|gb|AAO28089.1| polynucleotide phosphorylase [Xylella fastidiosa Temecula1]
Length = 719
Score = 152 bits (384), Expect = 3e-35, Method: Composition-based stats.
Identities = 41/243 (16%), Positives = 85/243 (34%), Gaps = 18/243 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
+R+ GR +R I++ V GS L G+T + TL + +V +
Sbjct: 334 VRIDGRSLEAVRPITVKVGVLPRVHGSGLFTRGETQAIVVTTLGTARDGQVIDAVTGEYK 393
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P S G + R+ G + R + +V+ I +
Sbjct: 394 ENFLFHYNFPPYSVGECGRFGVPKRREIGHGRL----ARRGVLAVMPSLDEFPYTIRVVS 449
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
++ +++G + A++ G+ +AL D ++ + V +G +
Sbjct: 450 EITESNGSSSMASVCGSSLALMDAGVPVKAPVAGIAMGLVKEGERFVVLSD--------- 500
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T G + +Q + +++ L AK ++
Sbjct: 501 ILGDEDHLGDMDFKVAGTSEG-VSALQMDIKIEGITEEIMRQALQQAKVGRLHILGEMDK 559
Query: 237 VIS 239
++
Sbjct: 560 ALA 562
Score = 93.8 bits (231), Expect = 2e-17, Method: Composition-based stats.
Identities = 45/232 (19%), Positives = 80/232 (34%), Gaps = 27/232 (11%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTKHGWITAEYGMLPR 68
++L V++ A G+ +VK DT LL T T E + + G +P
Sbjct: 34 VTLETGEVARQASGAVIVKMDDTVLLVTVVAAKTAREGQDFFPLTVDYQEKFYAGGRIPG 93
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
S R GR + I R+I R +R + QII + +
Sbjct: 94 SFFKR------EGRATEKETLISRLIDRPIRPLFPEDYKNEVQIIAMVMSLDPEIDGDIP 147
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+ GA AL KG + A G G I++ E ++
Sbjct: 148 AMIGASAALSLAGI-------------PFKGPIGAAKVGYNDGQYILNPTVSELKKSQLE 194
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
T + ++ V+ +E A S++ + + +I++ + +
Sbjct: 195 LVVAGTAN-AVLMVE--SEAALLSEEVMLGAVIFGHREMQKVIQVIDSLTAE 243
>gi|71898659|ref|ZP_00680829.1| Polyribonucleotide nucleotidyltransferase [Xylella fastidiosa
Ann-1]
gi|71731606|gb|EAO33667.1| Polyribonucleotide nucleotidyltransferase [Xylella fastidiosa
Ann-1]
Length = 700
Score = 152 bits (384), Expect = 3e-35, Method: Composition-based stats.
Identities = 41/243 (16%), Positives = 85/243 (34%), Gaps = 18/243 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
+R+ GR +R I++ V GS L G+T + TL + +V +
Sbjct: 315 VRIDGRSLEAVRPITVKVGVLPRVHGSGLFTRGETQAIVVTTLGTARDGQVIDAVTGEYK 374
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P S G + R+ G + R + +V+ I +
Sbjct: 375 ENFLFHYNFPPYSVGECGRFGVPKRREIGHGRL----ARRGVLAVMPSLDEFPYTIRVVS 430
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
++ +++G + A++ G+ +AL D ++ + V +G +
Sbjct: 431 EITESNGSSSMASVCGSSLALMDAGVPVKAPVAGIAMGLVKEGERFVVLSD--------- 481
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T G + +Q + +++ L AK ++
Sbjct: 482 ILGDEDHLGDMDFKVAGTSEG-VSALQMDIKIEGITEEIMRQALQQAKVGRLHILGEMDK 540
Query: 237 VIS 239
++
Sbjct: 541 ALA 543
Score = 93.8 bits (231), Expect = 2e-17, Method: Composition-based stats.
Identities = 45/232 (19%), Positives = 80/232 (34%), Gaps = 27/232 (11%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTKHGWITAEYGMLPR 68
++L V++ A G+ +VK DT LL T T E + + G +P
Sbjct: 15 VTLETGEVARQASGAVIVKMDDTVLLVTVVAAKTAREGQDFFPLTVDYQEKFYAGGRIPG 74
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
S R GR + I R+I R +R + QII + +
Sbjct: 75 SFFKR------EGRATEKETLISRLIDRPIRPLFPEDYKNEVQIIAMVMSLDPEIDGDIP 128
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+ GA AL KG + A G G I++ E ++
Sbjct: 129 AMIGASAALSLAGI-------------PFKGPIGAAKVGYNDGQYILNPTVSELKKSQLE 175
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
T + ++ V+ +E A S++ + + +I++ + +
Sbjct: 176 LVVAGTAN-AVLMVE--SEAALLSEEVMLGAVIFGHREMQKVIQVIDSLTAE 224
>gi|320527320|ref|ZP_08028505.1| polyribonucleotide nucleotidyltransferase [Solobacterium moorei
F0204]
gi|320132344|gb|EFW24889.1| polyribonucleotide nucleotidyltransferase [Solobacterium moorei
F0204]
Length = 752
Score = 152 bits (384), Expect = 3e-35, Method: Composition-based stats.
Identities = 42/243 (17%), Positives = 87/243 (35%), Gaps = 18/243 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
+R GR +++R + + GS + G+T +L+ TL + ++ +
Sbjct: 330 IRPDGRGLDELRPLDSQVDLLPRVHGSAMFTRGETQVLSVTTLGPLSDAQLIDDLTTETE 389
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
+Y P S G + + R+ G RAL V+ + I
Sbjct: 390 KRFMHQYNFPPFSVGEVGRMSSPGRREIGHGALG----ERALLQVLPTAEEFPYAIRTCA 445
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V++++G + A+I ++L ++ + + G +I
Sbjct: 446 EVLESNGSSSQASICAGTMSLMAAGVPIKAMVAGVAMGLITVGDTYSILTD--------- 496
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T +G I +Q + S++ L A +++ +
Sbjct: 497 IQGMEDHYGDMDFKVAGTRNG-ITALQMDIKVTGISEEILREALAQAHKGRMEILDNMET 555
Query: 237 VIS 239
IS
Sbjct: 556 AIS 558
Score = 109 bits (273), Expect = 3e-22, Method: Composition-based stats.
Identities = 45/232 (19%), Positives = 89/232 (38%), Gaps = 26/232 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATL---EEKVPMWIRNTKHGWITAEYGMLP 67
R +++ ++K A GS ++++ DT +L+TAT + + + G +P
Sbjct: 25 RTLTVENGEIAKQAGGSVVIRYADTTVLSTATANNQAKDTDFFPLTVLYQEKMYAAGKIP 84
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R GR + R+I R +R + QI+ D +
Sbjct: 85 GGFTRR------EGRPTEHATLTARLIDRPIRPLFAEGFRNEVQIVNTVLSCDPDASSEM 138
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
A++ G+ +AL G VA + + G I++ ++ D+
Sbjct: 139 ASLFGSSLALC-------------ISDIPFNGPVAGVMVARVDGEYIINPSVEQEKNSDL 185
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
+ T + I V+ A+ S++ L + D I +L +Q++VI+
Sbjct: 186 NVTVAGTKN-AINMVEAGAKE--VSEEDMLKALMIGHDAIKELCAIQEEVIA 234
>gi|312143658|ref|YP_003995104.1| polyribonucleotide nucleotidyltransferase [Halanaerobium sp.
'sapolanicus']
gi|311904309|gb|ADQ14750.1| polyribonucleotide nucleotidyltransferase [Halanaerobium sp.
'sapolanicus']
Length = 696
Score = 152 bits (384), Expect = 3e-35, Method: Composition-based stats.
Identities = 46/244 (18%), Positives = 93/244 (38%), Gaps = 18/244 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
+R GR+ +++R I V + GS + G+T L+ TL +E++ + +
Sbjct: 310 IRPDGREHDEIRPIWAEVGVVPRSHGSGVFTRGETQALSVLTLGASSDEQILFGLGEKET 369
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y G + R+ G +AL V+ I I
Sbjct: 370 KRYMHHYNFPSFCVGETSPMRSPGRREIGHGTLG----EKALLPVIPEKDDFPYTIRIVS 425
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V++++G + A+I G+ ++L D ++ + + + K +
Sbjct: 426 EVLESNGSSSQASICGSTLSLMDAGVPIKAPVSGIAMGLMKKDDEIVVLSD--------- 476
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T++G + +Q + S+D LN AK +++ +
Sbjct: 477 IQGFEDFHGDMDFKVAGTENG-VTALQMDMKLKGLSKDVLEEALNKAKKGRMHIMEKMLE 535
Query: 237 VISN 240
VI+
Sbjct: 536 VIAE 539
Score = 108 bits (269), Expect = 7e-22, Method: Composition-based stats.
Identities = 47/233 (20%), Positives = 87/233 (37%), Gaps = 27/233 (11%)
Query: 13 EISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVP---MWIRNTKHGWITAEYGMLPR 68
+ + ++K A GS +V+ GD+ +L TAT++E P + + G +P
Sbjct: 12 DFHIETGKLAKQANGSVMVRSGDSQVLVTATMDEPRPGMNYFPLMVNYEERVYAIGKIPG 71
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
R GR + R+I R++R + Q++ + D
Sbjct: 72 GVLRR------EGRPRDEATLAARVIDRSIRPLFPDGYRKDVQVVATILSVDDDHDPEML 125
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+ GA +A G + + G++ G I++ + E ++D
Sbjct: 126 ALNGASIA-------------LTISDIPFDGPIGGVKVGLVDGEIIINPNEEERENSELD 172
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
+ I+ V+ SA + ++LA I +IK+QK I E
Sbjct: 173 LVVAGSKD-AIMMVEASANEVE--EAVILEAMDLAHQEIQKMIKIQK-TIREE 221
>gi|254829912|ref|ZP_05234567.1| polynucleotide phosphorylase/polyadenylase [Listeria monocytogenes
10403S]
Length = 723
Score = 152 bits (384), Expect = 3e-35, Method: Composition-based stats.
Identities = 51/243 (20%), Positives = 89/243 (36%), Gaps = 18/243 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
+R GR+ N++R +S + GS L G T L+ TL E ++ + ++
Sbjct: 316 IRPDGRKVNEIRPLSSEVGMLPRVHGSGLFTRGQTQALSVCTLAPLREHQIIDGLGTEEY 375
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y S G R A R+ G RAL+ V+ I +
Sbjct: 376 KRFMHHYNFPQFSVGETGPRRAPGRREIGHGALG----ERALQYVIPSEEEFPYTIRLVS 431
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V++++G + A+I G+ +A+ D ++ + V G I
Sbjct: 432 EVLESNGSSSQASICGSTLAMLDAGVPIKAPVAGIAMGLVKLGDDYTILSD--------- 482
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T G I +Q + S+ L AK+ +++
Sbjct: 483 IQGMEDHFGDMDFKVAGTKDG-ITALQMDIKIDGLSRQILDEALTQAKEGRLHILEHLTS 541
Query: 237 VIS 239
IS
Sbjct: 542 TIS 544
Score = 111 bits (276), Expect = 1e-22, Method: Composition-based stats.
Identities = 44/230 (19%), Positives = 83/230 (36%), Gaps = 26/230 (11%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKV---PMWIRNTKHGWITAEYGMLPRS 69
+S+ ++K A G+ L+++GDT +LT A +K + + G +P
Sbjct: 16 LSVEVGQLAKQASGAALIRYGDTVVLTAAVGSKKPRPGDFFPLTVNYEEKMYSVGKVPGG 75
Query: 70 TGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAA 129
R GR R+ R+I R +R + QI + D AA
Sbjct: 76 FLKR------EGRPSDRATLTARLIDRPIRPLFAEGFRNEVQITSTVFSVDQDCSPEMAA 129
Query: 130 ITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDA 189
+ G+ VA +G +A + G + G +++ + D+
Sbjct: 130 MLGSSVA-------------LVISDIPFEGPIAGVDVGRIDGKYVINPTIEQAEKSDISL 176
Query: 190 NFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
T I V+ A+ S++ + + I L + Q+ +I+
Sbjct: 177 TVAGTYD-AINMVEAGAKE--VSEEAMLEAIMFGHEEIKRLCEFQQQIIA 223
>gi|332526743|ref|ZP_08402845.1| polynucleotide phosphorylase/polyadenylase [Rubrivivax
benzoatilyticus JA2]
gi|332111146|gb|EGJ11178.1| polynucleotide phosphorylase/polyadenylase [Rubrivivax
benzoatilyticus JA2]
Length = 769
Score = 152 bits (384), Expect = 3e-35, Method: Composition-based stats.
Identities = 45/242 (18%), Positives = 90/242 (37%), Gaps = 18/242 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +R I + V GS L G+T L ATL + + +
Sbjct: 317 RIDGRDTRTVRPIEIRSSVLPRTHGSALFTRGETQALVAATLGTERDAQRIDALAGEFED 376
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y M P +TG + + R+ G + RAL +V+ + + +
Sbjct: 377 RFMLHYNMPPFATGETGRVGSPKRREIGHGRL----AKRALVAVLPNKDEFPYTMRVVSE 432
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ G ++L D ++ + + +G+ A+ +
Sbjct: 433 ITESNGSSSMASVCGGCLSLLDAGVPLKAHVAGIAMGLIKEGNRFAVLTD---------I 483
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T SG I +Q + +++ L AK+ ++ +
Sbjct: 484 LGDEDHLGDMDFKVAGTASG-ITALQMDIKIQGITKEIMQVALAQAKEARLHILGKMVEA 542
Query: 238 IS 239
+
Sbjct: 543 VG 544
Score = 72.2 bits (175), Expect = 6e-11, Method: Composition-based stats.
Identities = 34/233 (14%), Positives = 77/233 (33%), Gaps = 31/233 (13%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT----KHGWITAEYGMLPR 68
+++ +++ + G+ +V DT +L T + + T G +P
Sbjct: 18 VTMETGEIARQSTGAVVVSVDDTVVLATVVAKSDAKAGQDFFPLTVDYIEKTYAAGKIPG 77
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
S R GR R+I R +R + Q++I + +
Sbjct: 78 SFFKR------EGRPSELETLTSRLIDRPIRPLFPEGFYNEVQVVIHVLSLNPEVQADIP 131
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+ A G + A G + G +++ + + +D
Sbjct: 132 AMIATSAA-------------LSISGIPFNGPIGAARVGYVNGEYVLNPSAAQLADSQMD 178
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAML----NLAKDRIADLIKLQKDV 237
T++ ++ V+ +E S++ + + K IA + +L ++
Sbjct: 179 LVVAGTEA-AVLMVE--SEATGLSEEVMLGAVVFGHDQGKIAIAAINELVREA 228
>gi|15836844|ref|NP_297532.1| polynucleotide phosphorylase/polyadenylase [Xylella fastidiosa
9a5c]
gi|9105050|gb|AAF83052.1|AE003877_7 polynucleotide phosphorylase [Xylella fastidiosa 9a5c]
Length = 719
Score = 152 bits (384), Expect = 3e-35, Method: Composition-based stats.
Identities = 41/243 (16%), Positives = 85/243 (34%), Gaps = 18/243 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
+R+ GR +R I++ V GS L G+T + TL + +V +
Sbjct: 334 VRIDGRSLEAVRPITVKVGVLPRVHGSGLFTRGETQAIVVTTLGTARDGQVIDAVTGEYK 393
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P S G + R+ G + R + +V+ I +
Sbjct: 394 ENFLFHYNFPPYSVGECGRFGVPKRREIGHGRL----ARRGVLAVMPSLDEFPYTIRVVS 449
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
++ +++G + A++ G+ +AL D ++ + V +G +
Sbjct: 450 EITESNGSSSMASVCGSSLALMDAGVPVKAPVAGIAMGLVKEGERFVVLSD--------- 500
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T G + +Q + +++ L AK ++
Sbjct: 501 ILGDEDHLGDMDFKVAGTSEG-VSALQMDIKIEGITEEIMRQALQQAKVGRLHILGEMDK 559
Query: 237 VIS 239
++
Sbjct: 560 ALA 562
Score = 94.5 bits (233), Expect = 1e-17, Method: Composition-based stats.
Identities = 45/232 (19%), Positives = 80/232 (34%), Gaps = 27/232 (11%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTKHGWITAEYGMLPR 68
++L V++ A G+ +VK DT LL T T E + + G +P
Sbjct: 34 VTLETGEVARQANGAVIVKMDDTVLLVTVVAAKTAREGQDFFPLTVDYQEKFYAGGRIPG 93
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
S R GR + I R+I R +R + QII + +
Sbjct: 94 SFFKR------EGRATEKETLISRLIDRPIRPLFPEDYKNEVQIIAMVMSLDPEIDGDIP 147
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+ GA AL KG + A G G I++ E ++
Sbjct: 148 AMIGASAALSLAGI-------------PFKGPIGAAKIGYNDGQYILNPTVSELKKSQLE 194
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
T + ++ V+ +E A S++ + + +I++ + +
Sbjct: 195 LVVAGTAN-AVLMVE--SEAALLSEEVMLGAVIFGHREMQKVIQVIDSLTAE 243
>gi|315932402|gb|EFV11345.1| S1 RNA binding domain protein [Campylobacter jejuni subsp. jejuni
327]
Length = 720
Score = 152 bits (384), Expect = 3e-35, Method: Composition-based stats.
Identities = 45/245 (18%), Positives = 84/245 (34%), Gaps = 22/245 (8%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWI------RNTK 55
R GR N++R IS+ + A GSCL G T L ATL + + +N
Sbjct: 336 RADGRSLNEVRPISIETNILPNAHGSCLFTRGQTQALVVATLGGENDAQMIDLLTEKNPI 395
Query: 56 HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115
Y S G +A R+ G RAL + I +
Sbjct: 396 SERFMVNYNFPGFSVGEASPIKAPGRRELGHGNL----AKRALYPSL--DENYPYVIRLV 449
Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIV 175
++++++G + A + G +AL + + + + A+ ++
Sbjct: 450 SEILESNGSSSMATVCGGSLALKAAGVPSLKLVAGVAMGLIFEDNKHAVLTDIM------ 503
Query: 176 DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
ED D+D + G + +Q + Q+ L AK+ ++ + +
Sbjct: 504 ---GLEDHDGDMDFKVAGSKDG-VTALQMDIKLGGIDQETLKQALYQAKEGRIHILNIME 559
Query: 236 DVISN 240
+
Sbjct: 560 EAAKE 564
Score = 84.1 bits (206), Expect = 1e-14, Method: Composition-based stats.
Identities = 40/250 (16%), Positives = 76/250 (30%), Gaps = 48/250 (19%)
Query: 20 VSKYAEGSCLVKFGDTHLLTTATLEE---KVPMWIRNTKHGWITAEYGMLPRSTGNRVKR 76
V+K A G+ L++ G + +L T EE + ++ G +P R
Sbjct: 19 VAKQAAGAVLMRQGKSVVLATVAREEKQVEEDFLPLTVQYIEKAYAAGKIPGGYVKR--- 75
Query: 77 EAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVA 136
+ R+I R+LR + QI++ + ++ A VA
Sbjct: 76 ---ETKPSDAETLTARIIDRSLRPLFPKGYTYPTQIVVMVLSADPKVDLQVMSLNAASVA 132
Query: 137 LHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDS 196
L+ +K V + G + G I++ + E +D
Sbjct: 133 LY-------------LSDIPMKAPVCGVRIGKIDGNFILNPNNEELQNSTLDLYVAGVKD 179
Query: 197 GHIVEVQGSA-------------------------ERATFSQDHFFAMLNLAKDRIADLI 231
++ ++ A S+D LNLA+ I +
Sbjct: 180 -ELLMIEMRALPDQKENEIFIEAPYADVLTQTTSQNMNELSEDEILEALNLAQKAILNGS 238
Query: 232 KLQKDVISNE 241
++ S
Sbjct: 239 NAYEEAFSKH 248
>gi|159900395|ref|YP_001546642.1| polynucleotide phosphorylase/polyadenylase [Herpetosiphon
aurantiacus ATCC 23779]
gi|257096698|sp|A9B8G1|PNP_HERA2 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|159893434|gb|ABX06514.1| Polyribonucleotide nucleotidyltransferase [Herpetosiphon
aurantiacus ATCC 23779]
Length = 777
Score = 152 bits (384), Expect = 3e-35, Method: Composition-based stats.
Identities = 45/243 (18%), Positives = 88/243 (36%), Gaps = 16/243 (6%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56
+R+ GR+ N++R I++ V GS L G T +LT AT +E+ +
Sbjct: 320 IRVDGRKVNEIRPIAVDVGVLPRVHGSGLFTRGQTQVLTVATLGSPGDEQRLDDLGIETT 379
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y STG R G + RAL V+ + +
Sbjct: 380 RHYMHHYNFPAFSTGEARPSRGPRRRDIGHGKL----AERALVPVLPEKDKFPYTMRLVS 435
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V+ ++G + A++ G+ +AL D ++ + + + D
Sbjct: 436 EVLASNGSSSMASVCGSSLALMDAGVPIKAPVAGVAMGLITGKEAG-------QFSVLTD 488
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED+ D+D T +G I +Q + + + A+ ++ +
Sbjct: 489 IQGLEDALGDMDFKVAGTTAG-ITALQMDIKTTGITYEIMQQAFEQARQGRVFILDKMNE 547
Query: 237 VIS 239
+I+
Sbjct: 548 IIN 550
Score = 107 bits (266), Expect = 2e-21, Method: Composition-based stats.
Identities = 42/235 (17%), Positives = 77/235 (32%), Gaps = 28/235 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKHGWITAEYGML 66
R +++ V++ A G+ LV++GDT LL T + + + + G +
Sbjct: 16 RPLTIEAGRVAQLANGAVLVRYGDTVLLAAVTASAEPRDGIDFFPLTVDYEEKMYAAGKI 75
Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
P S R GR + R+ R LR + Q+ I
Sbjct: 76 PGSFFKR------EGRPTETAILTSRLTDRPLRPLFPKGYYNDVQVSITTLSTDQVNDPG 129
Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
AI GA A V A+ G + G V+ G
Sbjct: 130 PLAIIGASAA-------------LVISDIPFAAPVGAVQMGHIDGVFAVNPVMGLMENSR 176
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
+D T ++ V+ SA ++ + + + +I+ Q + ++ +
Sbjct: 177 LDLVVAGTSE-AVMMVEASAYE--LTEAEMLEAVKRGHEAMQAVIQAQLE-LAEK 227
>gi|52842967|ref|YP_096766.1| polynucleotide phosphorylase/polyadenylase [Legionella pneumophila
subsp. pneumophila str. Philadelphia 1]
gi|81376653|sp|Q5ZRV8|PNP_LEGPH RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|52630078|gb|AAU28819.1| polyribonucleotide nucleotidyltransferase [Legionella pneumophila
subsp. pneumophila str. Philadelphia 1]
Length = 729
Score = 152 bits (384), Expect = 3e-35, Method: Composition-based stats.
Identities = 44/240 (18%), Positives = 89/240 (37%), Gaps = 10/240 (4%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R+ GR +R IS+ + + GSCL G+T + ATL + I + G
Sbjct: 314 RIDGRDHRTVRPISIRTKFLERTHGSCLFTRGETQAIVVATLGNERDAQILDGISGESRD 373
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
+ + V G R R+ RAL +V+ + + I ++ ++
Sbjct: 374 RFMLHYNFPPYSVGETGQVGSPKRREIGHGRLAKRALMAVLPDANEFPYVLRIVSEITES 433
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
+G + A + G +AL D ++ + + +G A+ + E
Sbjct: 434 NGSSSMATVCGTSLALMDAGVPLKAPVAGVAMGLIKEGDRYAVLTD---------ILGDE 484
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
D D+D T+ G I +Q + + + + L A + ++ + + ++
Sbjct: 485 DHLGDMDFKVAGTEKG-ITALQMDIKISGITNEIMEQALEQALEGRTHILGVMNNALAEH 543
Score = 100 bits (248), Expect = 2e-19, Method: Composition-based stats.
Identities = 40/235 (17%), Positives = 77/235 (32%), Gaps = 28/235 (11%)
Query: 13 EISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGMLP 67
++ L V++ A+G+ + T +L T E + + G +P
Sbjct: 14 KLILETGEVARQADGAVMASMNGTQVLVTVVWKKDGGESNDFFPLTVNYQEKFYAIGKIP 73
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R GR I R+I R +R + + QII + +
Sbjct: 74 GGFNKR------EGRPSDNETLISRLIDRPIRPLFPDNFFNEVQIIATVLSLNPEVSPDI 127
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
A+ GA A G + A G G +++ E +
Sbjct: 128 IAMIGASAA-------------LSISGVPFNGPIGAARVGYKDGVYLLNPSRKEQEESKL 174
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNEV 242
D T I+ V+ A+ S+D + + + ++IK ++ ++ +V
Sbjct: 175 DLVIAGTKD-AILMVESEAQE--LSEDIMRGAMLYGHEMMKNVIKSIEE-LARDV 225
>gi|237805195|ref|YP_002889349.1| polynucleotide phosphorylase/polyadenylase [Chlamydia trachomatis
B/TZ1A828/OT]
gi|231273495|emb|CAX10411.1| polyribonucleotide nucleotidyltransferase [Chlamydia trachomatis
B/TZ1A828/OT]
Length = 695
Score = 152 bits (384), Expect = 3e-35, Method: Composition-based stats.
Identities = 47/244 (19%), Positives = 88/244 (36%), Gaps = 18/244 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT--LEEKVPMWIRNTKHG- 57
+R+ GR ++R IS+ GSCL G+T + T E + G
Sbjct: 314 IRVDGRTTTEIRPISIETPFLPRTHGSCLFTRGETQSMAVCTLGGENMAQRFEDLNGDGA 373
Query: 58 -WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
+Y P S G + + R+ G + +AL V+ + I ++
Sbjct: 374 ARFYLQYFFPPFSVGEVGRIGSPGRREIGHGKL----AEKALSHVLPEISRFPYIIRLES 429
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
++ +++G + A++ G +AL D ++ + +L A I
Sbjct: 430 NITESNGSSSMASVCGGCLALMDAGVPIKAPVAGIAMGLILDRDQAIILSD--------- 480
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T G I Q + + L AK + ++ L
Sbjct: 481 ISGIEDHLGDMDFKVAGTAKG-ITAFQMDIKIEGITHKIMEQALAQAKQGRSHILNLMTQ 539
Query: 237 VISN 240
V+++
Sbjct: 540 VLAS 543
Score = 89.1 bits (219), Expect = 5e-16, Method: Composition-based stats.
Identities = 36/227 (15%), Positives = 71/227 (31%), Gaps = 26/227 (11%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLL---TTATLEEKVPMWIRNTKHGWITAEYGMLPRS 69
+ +++ A G+ LVK +T + A+L E V + + G
Sbjct: 16 LIFETGKIARQASGAILVKMNETWVFSSACAASLSEAVDFLPFRVDYQEKFSSAGRTSGG 75
Query: 70 TGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAA 129
R GR R + R+I R+LR + Q++ A
Sbjct: 76 FLKR------EGRPSEREILVSRLIDRSLRPSFPNRLMQDIQVLSYVWSYDGKTLPDPLA 129
Query: 130 ITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDA 189
I GA A +A + G++ G +++ E S +D
Sbjct: 130 ICGASAA-------------LAISEVPQNCIIAGVRVGLVGGKWVINPTRDELSASKLDL 176
Query: 190 NFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
T S ++ ++ +++ + + IA + +
Sbjct: 177 VMAGTAS-AVLMIE--GHCDFLTEEQVLEAIAFGQTYIAKICDAIEA 220
>gi|290893558|ref|ZP_06556541.1| polyribonucleotide nucleotidyltransferase [Listeria monocytogenes
FSL J2-071]
gi|290556903|gb|EFD90434.1| polyribonucleotide nucleotidyltransferase [Listeria monocytogenes
FSL J2-071]
Length = 723
Score = 152 bits (384), Expect = 3e-35, Method: Composition-based stats.
Identities = 51/243 (20%), Positives = 89/243 (36%), Gaps = 18/243 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
+R GR+ N++R +S + GS L G T L+ TL E ++ + ++
Sbjct: 316 IRPDGRKVNEIRPLSSEVGMLPRVHGSGLFTRGQTQALSVCTLAPLREHQIIDGLGTEEY 375
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y S G R A R+ G RAL+ V+ I +
Sbjct: 376 KRFMHHYNFPQFSVGETGPRRAPGRREIGHGALG----ERALQYVIPSEEEFPYTIRLVS 431
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V++++G + A+I G+ +A+ D ++ + V G I
Sbjct: 432 EVLESNGSSSQASICGSTLAMLDAGVPIKAPVAGIAMGLVKLGDDYTILSD--------- 482
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T G I +Q + S+ L AK+ +++
Sbjct: 483 IQGMEDHFGDMDFKVAGTKDG-ITALQMDIKIDGLSRQILDEALTQAKEGRLHILEHLTS 541
Query: 237 VIS 239
IS
Sbjct: 542 TIS 544
Score = 111 bits (276), Expect = 1e-22, Method: Composition-based stats.
Identities = 44/230 (19%), Positives = 83/230 (36%), Gaps = 26/230 (11%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKV---PMWIRNTKHGWITAEYGMLPRS 69
+S+ ++K A G+ L+++GDT +LT A +K + + G +P
Sbjct: 16 LSVEVGQLAKQASGAALIRYGDTVVLTAAVGSKKPRPGDFFPLTVNYEEKMYSVGKVPGG 75
Query: 70 TGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAA 129
R GR R+ R+I R +R + QI + D AA
Sbjct: 76 FLKR------EGRPSDRATLTARLIDRPIRPLFAEGFRNEVQITSTVFSVDQDCSPEMAA 129
Query: 130 ITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDA 189
+ G+ VA +G +A + G + G +++ + D+
Sbjct: 130 MLGSSVA-------------LVISDIPFEGPIAGVDVGRIDGKYVINPTIEQAEKSDISL 176
Query: 190 NFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
T I V+ A+ S++ + + I L + Q+ +I+
Sbjct: 177 TVAGTYD-AINMVEAGAKE--VSEEAMLEAIMFGHEEIKRLCEFQQQIIA 223
>gi|319892292|ref|YP_004149167.1| Polyribonucleotide nucleotidyltransferase [Staphylococcus
pseudintermedius HKU10-03]
gi|317161988|gb|ADV05531.1| Polyribonucleotide nucleotidyltransferase [Staphylococcus
pseudintermedius HKU10-03]
Length = 697
Score = 152 bits (384), Expect = 3e-35, Method: Composition-based stats.
Identities = 48/244 (19%), Positives = 90/244 (36%), Gaps = 18/244 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
+R GR+ +++R +S + A GS L G T L+ TL E ++ + +H
Sbjct: 318 IRPDGRKPDEIRPLSSEVGLLPRAHGSGLFTRGQTQALSVLTLGSISEYQIIDGLGEEEH 377
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y S G A R+ G RALR ++ + I
Sbjct: 378 KRFMHHYNFPNFSVGETGPVRAPGRREIGHGALG----ERALRYIIPDEKTFPYTVRIVS 433
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V++++G + A+I G+ +AL D ++ + V + + D
Sbjct: 434 EVLESNGSSSQASICGSTLALMDAGVPIKAPVAGIAMGLVTREE---------SYTILTD 484
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED+ D+D T G I +Q + +++ L A+ +++
Sbjct: 485 IQGMEDALGDMDFKVAGTTEG-ITAIQMDIKIDGLTKEVIEEALEQARKGRLAILEHMMQ 543
Query: 237 VISN 240
I
Sbjct: 544 TIDQ 547
Score = 114 bits (285), Expect = 1e-23, Method: Composition-based stats.
Identities = 40/231 (17%), Positives = 84/231 (36%), Gaps = 26/231 (11%)
Query: 13 EISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKV---PMWIRNTKHGWITAEYGMLPR 68
+++ ++K A G+ LV++GDT +L+TAT ++ + + G +P
Sbjct: 16 PLTIETGQLAKQANGAVLVRYGDTVVLSTATASKEPRDGDFFPLTVNYEEKMYAAGKIPG 75
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
R GR G + R+I R +R + QII + A
Sbjct: 76 GFKKR------EGRPGDEATLTARLIDRPIRPLFPDGYRHDVQIINTVLSADPNCSPEMA 129
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+ G+ +A +G +A ++ G + G +++ + + +D
Sbjct: 130 AMIGSSMA-------------LSVSDIPFQGPIAGVNVGYVDGEYVINPNLEQREKSRLD 176
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
+ V+ A ++ + + I L Q+++I+
Sbjct: 177 LEVAGHKD-AVNMVEAGASE--ITEAEMLEAILFGHEEIKRLCAFQEEIIA 224
>gi|217964522|ref|YP_002350200.1| polyribonucleotide nucleotidyltransferase
(Polynucleotidephosphorylase) (PNPase) (Vegetative
protein 15) (VEG15) [Listeria monocytogenes HCC23]
gi|254824610|ref|ZP_05229611.1| polyribonucleotide nucleotidyltransferase [Listeria monocytogenes
FSL J1-194]
gi|254852619|ref|ZP_05241967.1| polyribonucleotide nucleotidyltransferase [Listeria monocytogenes
FSL R2-503]
gi|254932354|ref|ZP_05265713.1| polyribonucleotide nucleotidyltransferase [Listeria monocytogenes
HPB2262]
gi|255520235|ref|ZP_05387472.1| polynucleotide phosphorylase/polyadenylase [Listeria monocytogenes
FSL J1-175]
gi|300765429|ref|ZP_07075411.1| polyribonucleotide nucleotidyltransferase [Listeria monocytogenes
FSL N1-017]
gi|254782725|sp|B8DFZ6|PNP_LISMH RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|217333792|gb|ACK39586.1| polyribonucleotide nucleotidyltransferase
(Polynucleotidephosphorylase) (PNPase) (Vegetative
protein 15) (VEG15) [Listeria monocytogenes HCC23]
gi|258605934|gb|EEW18542.1| polyribonucleotide nucleotidyltransferase [Listeria monocytogenes
FSL R2-503]
gi|293583910|gb|EFF95942.1| polyribonucleotide nucleotidyltransferase [Listeria monocytogenes
HPB2262]
gi|293593848|gb|EFG01609.1| polyribonucleotide nucleotidyltransferase [Listeria monocytogenes
FSL J1-194]
gi|300513866|gb|EFK40931.1| polyribonucleotide nucleotidyltransferase [Listeria monocytogenes
FSL N1-017]
gi|307570912|emb|CAR84091.1| polyribonucleotide nucleotidyltransferase [Listeria monocytogenes
L99]
gi|332311774|gb|EGJ24869.1| Polyribonucleotide nucleotidyltransferase [Listeria monocytogenes
str. Scott A]
Length = 723
Score = 152 bits (384), Expect = 3e-35, Method: Composition-based stats.
Identities = 51/243 (20%), Positives = 89/243 (36%), Gaps = 18/243 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
+R GR+ N++R +S + GS L G T L+ TL E ++ + ++
Sbjct: 316 IRPDGRKVNEIRPLSSEVGMLPRVHGSGLFTRGQTQALSVCTLAPLREHQIIDGLGTEEY 375
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y S G R A R+ G RAL+ V+ I +
Sbjct: 376 KRFMHHYNFPQFSVGETGPRRAPGRREIGHGALG----ERALQYVIPSEEEFPYTIRLVS 431
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V++++G + A+I G+ +A+ D ++ + V G I
Sbjct: 432 EVLESNGSSSQASICGSTLAMLDAGVPIKAPVAGIAMGLVKLGDDYTILSD--------- 482
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T G I +Q + S+ L AK+ +++
Sbjct: 483 IQGMEDHFGDMDFKVAGTKDG-ITALQMDIKIDGLSRQILDEALTQAKEGRLHILEHLTS 541
Query: 237 VIS 239
IS
Sbjct: 542 TIS 544
Score = 111 bits (276), Expect = 1e-22, Method: Composition-based stats.
Identities = 44/230 (19%), Positives = 83/230 (36%), Gaps = 26/230 (11%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKV---PMWIRNTKHGWITAEYGMLPRS 69
+S+ ++K A G+ L+++GDT +LT A +K + + G +P
Sbjct: 16 LSVEVGQLAKQASGAALIRYGDTVVLTAAVGSKKPRPGDFFPLTVNYEEKMYSVGKVPGG 75
Query: 70 TGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAA 129
R GR R+ R+I R +R + QI + D AA
Sbjct: 76 FLKR------EGRPSDRATLTARLIDRPIRPLFAEGFRNEVQITSTVFSVDQDCSPEMAA 129
Query: 130 ITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDA 189
+ G+ VA +G +A + G + G +++ + D+
Sbjct: 130 MLGSSVA-------------LVISDIPFEGPIAGVDVGRIDGKYVINPTIEQAEKSDISL 176
Query: 190 NFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
T I V+ A+ S++ + + I L + Q+ +I+
Sbjct: 177 TVAGTYD-AINMVEAGAKE--VSEEAMLEAIMFGHEEIKRLCEFQQQIIA 223
>gi|76789587|ref|YP_328673.1| polynucleotide phosphorylase/polyadenylase [Chlamydia trachomatis
A/HAR-13]
gi|237803274|ref|YP_002888468.1| polynucleotide phosphorylase/polyadenylase [Chlamydia trachomatis
B/Jali20/OT]
gi|123606542|sp|Q3KKJ7|PNP_CHLTA RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|76168117|gb|AAX51125.1| polyribonucleotide nucleotidyltransferase [Chlamydia trachomatis
A/HAR-13]
gi|231274508|emb|CAX11304.1| polyribonucleotide nucleotidyltransferase [Chlamydia trachomatis
B/Jali20/OT]
Length = 695
Score = 152 bits (384), Expect = 3e-35, Method: Composition-based stats.
Identities = 47/244 (19%), Positives = 89/244 (36%), Gaps = 18/244 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT--LEEKVPMWIRNTKHG- 57
+R+ GR ++R IS+ GSCL G+T + T E + G
Sbjct: 314 IRVDGRTTTEIRPISIETPFLPRTHGSCLFTRGETQSMAVCTLGGENMAQRFEDLNGDGA 373
Query: 58 -WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
+Y P S G + + R+ G + +AL V+ ++ I ++
Sbjct: 374 ARFYLQYFFPPFSVGEVGRIGSPGRREIGHGKL----AEKALSHVLPETSRFPYIIRLES 429
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
++ +++G + A++ G +AL D ++ + +L A I
Sbjct: 430 NITESNGSSSMASVCGGCLALMDAGVPIKAPVAGIAMGLILDRDQAIILSD--------- 480
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T G I Q + + L AK + ++ L
Sbjct: 481 ISGIEDHLGDMDFKVAGTAKG-ITAFQMDIKIEGITHKIMEQALAQAKQGRSHILNLMTQ 539
Query: 237 VISN 240
V+++
Sbjct: 540 VLAS 543
Score = 89.1 bits (219), Expect = 5e-16, Method: Composition-based stats.
Identities = 36/227 (15%), Positives = 71/227 (31%), Gaps = 26/227 (11%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLL---TTATLEEKVPMWIRNTKHGWITAEYGMLPRS 69
+ +++ A G+ LVK +T + A+L E V + + G
Sbjct: 16 LIFETGKIARQASGAILVKMNETWVFSSACAASLSEAVDFLPFRVDYQEKFSSAGRTSGG 75
Query: 70 TGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAA 129
R GR R + R+I R+LR + Q++ A
Sbjct: 76 FLKR------EGRPSEREILVSRLIDRSLRPSFPNRLMQDIQVLSYVWSYDGKTLPDPLA 129
Query: 130 ITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDA 189
I GA A +A + G++ G +++ E S +D
Sbjct: 130 ICGASAA-------------LAISEVPQNCIIAGVRVGLVGGKWVINPTRDELSASKLDL 176
Query: 190 NFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
T S ++ ++ +++ + + IA + +
Sbjct: 177 VMAGTAS-AVLMIE--GHCDFLTEEQVLEAIAFGQTYIAKICDAIEA 220
>gi|113954193|ref|YP_729551.1| ribonuclease PH [Synechococcus sp. CC9311]
gi|113881544|gb|ABI46502.1| ribonuclease PH [Synechococcus sp. CC9311]
Length = 241
Score = 152 bits (384), Expect = 3e-35, Method: Composition-based stats.
Identities = 95/238 (39%), Positives = 144/238 (60%), Gaps = 4/238 (1%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R GR+ +R S++ +A S ++ G T +L + +E VP W ++ GW++A
Sbjct: 6 RNDGRRPGDLRPFSISWDPMGFALSSVIIHSGRTTVLCSVCHQEGVPRWRKDQGKGWLSA 65
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
EY +LP ST R + + GR+QEIQR+IGR+LR+ +D+ ALG + IDCDVIQA
Sbjct: 66 EYRLLPGSTPER--QNRELLKLSGRTQEIQRLIGRSLRAAIDMEALGENTLRIDCDVIQA 123
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
D GTRTAAI+G+WVAL + + + ++ VAA+S G++ P++DLDY E
Sbjct: 124 DAGTRTAAISGSWVALQRACERLV--QQGVLNTNPVQSQVAAVSVGVIHKRPLLDLDYSE 181
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
DS DVD N VM GH++E+QG+AE A FS+ +L+LA+ + ++ Q+ +S
Sbjct: 182 DSQADVDLNVVMNGEGHLLELQGTAEGAPFSRHQLNDLLDLAEPGLKKIMDDQRAALS 239
>gi|114321093|ref|YP_742776.1| polynucleotide phosphorylase/polyadenylase [Alkalilimnicola
ehrlichii MLHE-1]
gi|114227487|gb|ABI57286.1| Polyribonucleotide nucleotidyltransferase [Alkalilimnicola
ehrlichii MLHE-1]
Length = 720
Score = 152 bits (384), Expect = 3e-35, Method: Composition-based stats.
Identities = 38/242 (15%), Positives = 84/242 (34%), Gaps = 18/242 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +R I + GS + G+T + TL + ++ I +
Sbjct: 339 RIDGRDTRTVRPIDIEVGSLPRTHGSAIFTRGETQAVVVTTLGTGRDAQIIDAIEGERKE 398
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P G R+ G + R + +V+ + I + +
Sbjct: 399 QFMLHYNFPPYCVGETGFMGTPKRREIGHGKL----AKRGIEAVMPAADDCPYVIRVVSE 454
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A + G ++L D ++ + + + A+ +
Sbjct: 455 ITESNGSSSMATVCGTSLSLMDAGVPVKAPVAGIAMGLIKEDEQFAVLSD---------I 505
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T+SG + +Q + +++ L A++ ++ +
Sbjct: 506 LGDEDHLGDMDFKVAGTESG-VTALQMDIKIQGITREIMEQALEQAREGRLHILGEMNNA 564
Query: 238 IS 239
IS
Sbjct: 565 IS 566
Score = 98.8 bits (244), Expect = 5e-19, Method: Composition-based stats.
Identities = 37/232 (15%), Positives = 81/232 (34%), Gaps = 27/232 (11%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPM----WIRNTKHGWITAEYGMLPR 68
++L V++ A+G+ LV DT +L TA ++ + + T G +P
Sbjct: 37 VTLETGGVARQADGAVLVNMSDTVVLVTAVGRKEADPGKGFFPLTVNYQERTYAAGKIPG 96
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
R GR + R+I R +R + Q++ + +
Sbjct: 97 GFFKR------EGRPSEKETLTCRLIDRPIRPLFPEGFYNEVQVVATVLSMNPEVDADIP 150
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+ GA A G + A G G +++ + E + D+D
Sbjct: 151 ALIGASAA-------------LSISGIPFDGPIGAARVGYKDGEYLLNPTFEETAASDLD 197
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
T++ ++ V+ A + ++ + +++ I+ ++ +
Sbjct: 198 LVVAGTEN-AVLMVESEANQ--LPEEAMLGAVLYGHEQMQVAIQAINELTAE 246
>gi|187929298|ref|YP_001899785.1| polynucleotide phosphorylase/polyadenylase [Ralstonia pickettii
12J]
gi|226702680|sp|B2U7R6|PNP_RALPJ RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|187726188|gb|ACD27353.1| Polyribonucleotide nucleotidyltransferase [Ralstonia pickettii 12J]
Length = 724
Score = 152 bits (384), Expect = 3e-35, Method: Composition-based stats.
Identities = 48/242 (19%), Positives = 94/242 (38%), Gaps = 18/242 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +R I + V A GS L G+T L A L +E++ ++
Sbjct: 317 RIDGRDTRTVRPIEIRSSVLPRAHGSSLFTRGETQALVVAALGTKSDEQIIDALQGEYRD 376
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y M P +TG + + R+ G + RAL V+ + I + +
Sbjct: 377 RFMLHYNMPPFATGETGRVGSPKRREVGHGRL----AKRALIPVLPPADEFGYTIRLVSE 432
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ G +AL D ++ + +L+ + A+ +
Sbjct: 433 ITESNGSSSMASVCGGSLALMDAGVPIKAHVAGVAMGLILEDNKFAVLTD---------I 483
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D TD+G I +Q + +++ L AK+ ++ +
Sbjct: 484 LGDEDHLGDMDFKVAGTDAG-ITALQMDIKVQGITKEIMQVALAQAKEGRLHILGKMQAA 542
Query: 238 IS 239
+
Sbjct: 543 MG 544
Score = 94.1 bits (232), Expect = 1e-17, Method: Composition-based stats.
Identities = 39/233 (16%), Positives = 76/233 (32%), Gaps = 31/233 (13%)
Query: 13 EISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT----KHGWITAEYGMLP 67
++ + +++ A G+ L+ DT +L T + + T G +P
Sbjct: 17 KVRMETGEIARQASGAVLLDMDDTVVLATVVGAKNPKPGQDFFPLTVDYLEKTYAAGKIP 76
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R GR R+I R LR + Q++I I +
Sbjct: 77 GGFFKR------EGRPSENETLTSRLIDRPLRPLFPEGFYNEVQVVIHVLSINPEVPADI 130
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
A+ A AL G V A G G +++ + + + D+
Sbjct: 131 PALVAASAALAVSG-------------LPFNGPVGAARVGYKDGQYLLNPNRAQLAHSDL 177
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKD----RIADLIKLQKD 236
D T+ ++ V+ A++ S++ + + I + L +D
Sbjct: 178 DLVVAGTER-AVLMVESEAQQ--LSEEIMLGAVVYGHEQMQIAINAIHDLVRD 227
>gi|58698478|ref|ZP_00373385.1| polyribonucleotide nucleotidyltransferase [Wolbachia endosymbiont
of Drosophila ananassae]
gi|58535017|gb|EAL59109.1| polyribonucleotide nucleotidyltransferase [Wolbachia endosymbiont
of Drosophila ananassae]
Length = 677
Score = 152 bits (384), Expect = 3e-35, Method: Composition-based stats.
Identities = 44/245 (17%), Positives = 88/245 (35%), Gaps = 18/245 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTT----ATLEEKVPMWIRNTKH 56
+R+ GR+ +++R+I + + GS L G+T L T +E++ I +
Sbjct: 310 VRIDGRKHDEIRQIEVEVDILSKTHGSALFTRGNTQALVVTALGTTQDEQIVDDIEGDRR 369
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y + G A R+ G + +A+ V+ + I +
Sbjct: 370 EHFMLHYNFPSFAVGETSAARAPGRREIGHGKL----AWKAIHPVLPDKSEFPYTIRVVS 425
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+++++DG + A + G +AL D ++ + + I
Sbjct: 426 EILESDGSSSMATVCGTSLALMDTGVPIKAPVAGIAMGLIKDKDEYVILSD--------- 476
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T G + +Q + + S + L AK +++
Sbjct: 477 ILGDEDYLGDMDFKVAGTSEG-VTALQMDMKISGISFEIVEKSLEQAKAGRLHILEKMNA 535
Query: 237 VISNE 241
VIS
Sbjct: 536 VISEH 540
Score = 103 bits (256), Expect = 2e-20, Method: Composition-based stats.
Identities = 45/229 (19%), Positives = 80/229 (34%), Gaps = 25/229 (10%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATL---EEKVPMWIRNTKHGWITAEYGMLP 67
R +SL +++ A GS +V +GDT +L T EE V N + + G +P
Sbjct: 14 RTLSLETGKIARQAHGSVVVNYGDTSVLVTVVSKKKEENVDFLPLNVQFIAKSYAMGKIP 73
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R G+ R I R+I R++R + ++ +
Sbjct: 74 GGFFKR------EGKPSDRETLISRVIDRSIRPLFPEGFHDEISVVCNLLTYDTVNPPEV 127
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
A+ GA AL + I++ E +
Sbjct: 128 PALIGAVAALAISGVPFHFTIAGV------------MVGCDENNNYILNPSVQEMKASSL 175
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
D F+ D I+ V+ +E S+++ F + + + +IKL K+
Sbjct: 176 DL-FLSGDENSILMVE--SEVKELSEENVFNAIKFGHEHLKPVIKLIKE 221
>gi|330969656|gb|EGH69722.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas syringae
pv. aceris str. M302273PT]
Length = 701
Score = 152 bits (384), Expect = 3e-35, Method: Composition-based stats.
Identities = 45/243 (18%), Positives = 92/243 (37%), Gaps = 18/243 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +R +++ V GS L G+T L ATL + ++ + K
Sbjct: 316 RIDGRDTRTVRPLNIEVGVLPKTHGSALFTRGETQALVVATLGTARDAQLLDTLEGEKKD 375
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + R+ G + R++++++ + + I + +
Sbjct: 376 PFMLHYNFPPFSVGECGRMGGAGRREIGHGRL----ARRSVQAMLPGADVFPYTIRVVSE 431
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ GA +AL D M+ + V +G AI +
Sbjct: 432 ITESNGSSSMASVCGASLALMDAGVPMKAPVAGIAMGLVKEGEKFAILTD---------I 482
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T G + +Q + +++ L A + +++ +
Sbjct: 483 LGDEDHLGDMDFKVAGTSKG-VTALQMDIKIKGITEEIMEIALGQALEARLNILGQMNQI 541
Query: 238 ISN 240
I
Sbjct: 542 IGQ 544
Score = 100 bits (249), Expect = 1e-19, Method: Composition-based stats.
Identities = 36/234 (15%), Positives = 73/234 (31%), Gaps = 29/234 (12%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTH-LLTTATLEEKVP----MWIRNTKHGWITAEYGMLP 67
++L +++ A G+ LV D +L T ++ + + + T G +P
Sbjct: 15 VTLETGRIARQASGAVLVTVDDDVSVLVTVVGAKQADAGKGFFPLSVHYQEKTYAAGKIP 74
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R GR + R+I R +R + + Q++
Sbjct: 75 GGFFKR------EGRPSEKETLTSRLIDRPIRPLFPEGFMNEVQVVCTVVSTSKKIDPDI 128
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY-PIVDLDYGEDSTID 186
AA+ G A G V A +++ Y +
Sbjct: 129 AAMIGTSAA-------------LAISGIPFDGPVGAARVAFHESTGYLLNPTYEQLQASS 175
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
+D T ++ V+ A+ ++D + A D +I K++ +
Sbjct: 176 LDMVVAGTSE-AVLMVESEAKE--LTEDQMLGAVLFAHDEFQVVINAIKELAAE 226
>gi|121604326|ref|YP_981655.1| polynucleotide phosphorylase/polyadenylase [Polaromonas
naphthalenivorans CJ2]
gi|187610307|sp|A1VM56|PNP_POLNA RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|120593295|gb|ABM36734.1| 3' exoribonuclease [Polaromonas naphthalenivorans CJ2]
Length = 703
Score = 152 bits (384), Expect = 3e-35, Method: Composition-based stats.
Identities = 43/243 (17%), Positives = 88/243 (36%), Gaps = 18/243 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +R I + V GS L G+T L TL + + +
Sbjct: 317 RIDGRDTRTVRPIEIRNSVLPRTHGSALFTRGETQALVVTTLGTERDAQRIDALSGDYED 376
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y M P +TG + + R+ G + RAL +V+ + + +
Sbjct: 377 RFMLHYNMPPFATGETGRVGSPKRREIGHGRL----AKRALIAVLPSKEEFPYTMRVVSE 432
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ G ++L D M+ + + + + A+ +
Sbjct: 433 ITESNGSSSMASVCGGCLSLMDAGVPMKAHVAGIAMGLIKEDNRFAVLTD---------I 483
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T G I +Q + +++ L AK+ ++ ++
Sbjct: 484 LGDEDHLGDMDFKVAGTTFG-ITALQMDIKIQGITKEIMQVALAQAKEARMHILGKMQEA 542
Query: 238 ISN 240
+
Sbjct: 543 MGQ 545
Score = 91.1 bits (224), Expect = 1e-16, Method: Composition-based stats.
Identities = 32/234 (13%), Positives = 75/234 (32%), Gaps = 31/234 (13%)
Query: 13 EISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT----KHGWITAEYGMLP 67
++++ +++ A G+ L+ T +L T + + T G +P
Sbjct: 17 KVTMETGEMARQAGGAVLLDMDGTVVLATVVAKSDAKPGQDFFPLTVDYLEKTYAAGRIP 76
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
S R GR R+I R +R + Q++I + +
Sbjct: 77 GSFFKR------EGRPSEFETLTSRLIDRPIRPLFPEGFFNEVQVVIHVLSLNPEVEGDI 130
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
A+ + A G + A + G +++ + +
Sbjct: 131 PALIASSAA-------------LSISGIPFNGPIGAARVAYINGEYVLNPGKTQLQNSTM 177
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKD----RIADLIKLQKDV 237
D T++ ++ V+ A++ S++ + + I + +L +D
Sbjct: 178 DLVVAGTEA-AVLMVESEAKQ--LSEEIMLGAIVFGHEQGNIAINAIHELVRDA 228
>gi|148361082|ref|YP_001252289.1| polyribonucleotide nucleotidyltransferase [Legionella pneumophila
str. Corby]
gi|296108412|ref|YP_003620113.1| polyribonucleotide nucleotidyltransferase [Legionella pneumophila
2300/99 Alcoy]
gi|187610281|sp|A5IHU3|PNP_LEGPC RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|148282855|gb|ABQ56943.1| polyribonucleotide nucleotidyltransferase [Legionella pneumophila
str. Corby]
gi|295650314|gb|ADG26161.1| polyribonucleotide nucleotidyltransferase [Legionella pneumophila
2300/99 Alcoy]
Length = 729
Score = 152 bits (384), Expect = 3e-35, Method: Composition-based stats.
Identities = 44/240 (18%), Positives = 89/240 (37%), Gaps = 10/240 (4%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R+ GR +R IS+ + + GSCL G+T + ATL + I + G
Sbjct: 314 RIDGRDHRTVRPISIRTKFLERTHGSCLFTRGETQAIVVATLGNERDAQILDGISGESRD 373
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
+ + V G R R+ RAL +V+ + + I ++ ++
Sbjct: 374 RFMLHYNFPPYSVGETGQVGSPKRREIGHGRLAKRALMAVLPDANEFPYVLRIVSEITES 433
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
+G + A + G +AL D ++ + + +G A+ + E
Sbjct: 434 NGSSSMATVCGTSLALMDAGVPLKAPVAGVAMGLIKEGDRYAVLTD---------ILGDE 484
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
D D+D T+ G I +Q + + + + L A + ++ + + ++
Sbjct: 485 DHLGDMDFKVAGTEKG-ITALQMDIKISGITNEIMEQALEQALEGRTHILGVMNNALAEH 543
Score = 100 bits (249), Expect = 1e-19, Method: Composition-based stats.
Identities = 41/235 (17%), Positives = 76/235 (32%), Gaps = 28/235 (11%)
Query: 13 EISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGMLP 67
+ L V++ A+G+ + T +L T E + + G +P
Sbjct: 14 NLILETGEVARQADGAVMASMNGTQVLVTVVWKKDGGESNDFFPLTVNYQEKFYAIGKIP 73
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R GR I R+I R +R + + QII + +
Sbjct: 74 GGFNKR------EGRPSDNETLISRLIDRPIRPLFPDNFFNEVQIIATVLSLNPEVSPDI 127
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
A+ GA A G + A G G +++ E +
Sbjct: 128 IAMIGASAA-------------LSISGVPFNGPIGAARVGYKDGVYLLNPSRKEQEESKL 174
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNEV 242
D T I+ V+ A+ S+D + + + ++IK ++ ++ EV
Sbjct: 175 DLVIAGTKD-AILMVESEAQE--LSEDIMRGAMLYGHEMMKNVIKSIEE-LAREV 225
>gi|145220228|ref|YP_001130937.1| polynucleotide phosphorylase/polyadenylase [Prosthecochloris
vibrioformis DSM 265]
gi|189037312|sp|A4SG26|PNP_PROVI RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|145206392|gb|ABP37435.1| Polyribonucleotide nucleotidyltransferase [Chlorobium
phaeovibrioides DSM 265]
Length = 732
Score = 152 bits (384), Expect = 3e-35, Method: Composition-based stats.
Identities = 50/241 (20%), Positives = 86/241 (35%), Gaps = 18/241 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
RL GR +Q+R IS+ V A GS L G+T L TL + + + N+
Sbjct: 332 RLDGRTLDQVRPISIDLGVIPRAHGSALFTRGETQALVAVTLGTKKDAQSVDTLTNSADK 391
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + R+ G RA+R V I I +
Sbjct: 392 RFMLHYNFPPFSVGEVGRLGTTGRREIGHGNL----AERAIRMVAPTEQEFPYTIRIVSE 447
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+++++G + A++ G +AL D ++ + + + +G A+ +
Sbjct: 448 ILESNGSSSMASVCGGTLALMDGGVPLKKAVSGIAMGLIKEGSEYAVLSD---------I 498
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T G I Q + L A+ ++ ++
Sbjct: 499 LGNEDHLGDMDFKVSGTRDG-ITACQMDIKIDGLDYHILETALEQARRGRFHILDKMEEA 557
Query: 238 I 238
I
Sbjct: 558 I 558
Score = 110 bits (275), Expect = 2e-22, Method: Composition-based stats.
Identities = 43/230 (18%), Positives = 77/230 (33%), Gaps = 28/230 (12%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVP-----MWIRNTKHGWITAEYGMLP 67
IS+ ++K A+G+ +V+ GDT ++ T +K P + ++ G P
Sbjct: 15 ISIETGRMAKQADGATVVRMGDTMVIATVVSSKKTPSPNQDFFPLQVEYREKYYAAGKFP 74
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R R + R+I RALR + Q+II+
Sbjct: 75 GGFFKR------EARPSEKEILSARLIDRALRPLFPTGYYYETQVIINVISSDQQNDADV 128
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
A A+ + ++ + G + G I++ E D+
Sbjct: 129 LGGLAASAAIM-------------VSDIPFENAMSEVRVGRVNGQFIINPTIDELEGSDI 175
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
D + T +G I ++ E S+ + + I L LQ V
Sbjct: 176 DISIGGT-AGTICMLE--GEMKEISEAEMLEAIRFGHEAIKKLCALQDSV 222
>gi|146299204|ref|YP_001193795.1| polynucleotide phosphorylase/polyadenylase [Flavobacterium
johnsoniae UW101]
gi|187610263|sp|A5FJZ1|PNP_FLAJO RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|146153622|gb|ABQ04476.1| Polyribonucleotide nucleotidyltransferase [Flavobacterium
johnsoniae UW101]
Length = 714
Score = 152 bits (384), Expect = 3e-35, Method: Composition-based stats.
Identities = 50/243 (20%), Positives = 81/243 (33%), Gaps = 20/243 (8%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
+RL GR+ ++R I GS L G+T L T TL E
Sbjct: 321 IRLDGRKTTEIRPIWCETDYLPSVHGSSLFTRGETQALATVTLGTSREANQIDSPSEQGE 380
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P STG S R+ G RAL++++ I +
Sbjct: 381 EKFYLHYNFPPFSTGEAKPLRGTSRREVGHGNL----AQRALKNMIPAD--CPYTIRVVS 434
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V++++G + A + +AL D M + + + G A+
Sbjct: 435 EVLESNGSSSMATVCAGTMALMDAGVQMVKPVSGIAMGLITDGEKFAVLSD--------- 485
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T G I Q + D L A+D ++ +
Sbjct: 486 ILGDEDHLGDMDFKVTGTADG-ITACQMDIKIDGLRYDIMEQALAQARDGRLHILGKLTE 544
Query: 237 VIS 239
I+
Sbjct: 545 TIA 547
Score = 97.6 bits (241), Expect = 1e-18, Method: Composition-based stats.
Identities = 38/235 (16%), Positives = 68/235 (28%), Gaps = 27/235 (11%)
Query: 7 QENQMREISLTRR-VSKYAEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTKHGWITA 61
R IS+ ++K A+GS +V+ G+ LL TA T V + A
Sbjct: 11 DLGDGRSISIETGKLAKQADGSVVVRLGNCMLLATAVSARTSNPGVDFLPLTVDYREKFA 70
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
G P R R R++ R LR + Q++I
Sbjct: 71 AAGRFPGGFFKR------EARPSDSEVLTMRLVDRVLRPLFPDDYHAETQVMIQLMSHDD 124
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
+ L + + ++ + + G +++ E
Sbjct: 125 NVMPDA-------------LAGLAASAALAVSDIPFYNLISEVRVARIDGKLVINPSRTE 171
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
D+D + V+ E S+ + A + I I Q+
Sbjct: 172 LEKSDIDMMI-GASLDSVAMVE--GEMKEISEAEMIEAIKFAHEAIKVQIHAQQK 223
>gi|16078732|ref|NP_389551.1| polynucleotide phosphorylase/polyadenylase [Bacillus subtilis
subsp. subtilis str. 168]
gi|221309547|ref|ZP_03591394.1| polynucleotide phosphorylase/polyadenylase [Bacillus subtilis
subsp. subtilis str. 168]
gi|221313871|ref|ZP_03595676.1| polynucleotide phosphorylase/polyadenylase [Bacillus subtilis
subsp. subtilis str. NCIB 3610]
gi|221318794|ref|ZP_03600088.1| polynucleotide phosphorylase/polyadenylase [Bacillus subtilis
subsp. subtilis str. JH642]
gi|221323066|ref|ZP_03604360.1| polynucleotide phosphorylase/polyadenylase [Bacillus subtilis
subsp. subtilis str. SMY]
gi|321315436|ref|YP_004207723.1| polynucleotide phosphorylase/polyadenylase [Bacillus subtilis BSn5]
gi|1709698|sp|P50849|PNP_BACSU RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase;
AltName: Full=Vegetative protein 15; Short=VEG15
gi|1184680|gb|AAC43595.1| polynucleotide phosphorylase [Bacillus subtilis]
gi|2634041|emb|CAB13542.1| polynucleotide phosphorylase (PNPase) [Bacillus subtilis subsp.
subtilis str. 168]
gi|291484223|dbj|BAI85298.1| polynucleotide phosphorylase/polyadenylase [Bacillus subtilis
subsp. natto BEST195]
gi|320021710|gb|ADV96696.1| polynucleotide phosphorylase/polyadenylase [Bacillus subtilis BSn5]
gi|1589234|prf||2210369A polynucleotide phosphorylase
Length = 705
Score = 152 bits (384), Expect = 3e-35, Method: Composition-based stats.
Identities = 44/244 (18%), Positives = 85/244 (34%), Gaps = 18/244 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56
+R GR +Q+R +S + GS L G T L+ T + ++ + +
Sbjct: 315 VRPDGRGVDQIRPLSSEVGLLPRTHGSGLFTRGQTQALSVCTLGALGDVQILDGLGVEES 374
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y S G R+ G RAL V+ + +
Sbjct: 375 KRFMHHYNFPQFSVGETGPMRGPGRREIGHGALG----ERALEPVIPSEKDFPYTVRLVS 430
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V++++G T A+I + +A+ D ++ + V G + D
Sbjct: 431 EVLESNGSTSQASICASTLAMMDAGVPIKAPVAGIAMGLVKSGE---------HYTVLTD 481
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED+ D+D T+ G + +Q + S++ L AK +++
Sbjct: 482 IQGMEDALGDMDFKVAGTEKG-VTALQMDIKIEGLSREILEEALQQAKKGRMEILNSMLA 540
Query: 237 VISN 240
+S
Sbjct: 541 TLSE 544
Score = 116 bits (291), Expect = 2e-24, Method: Composition-based stats.
Identities = 39/232 (16%), Positives = 89/232 (38%), Gaps = 26/232 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKV---PMWIRNTKHGWITAEYGMLP 67
R +++ ++K A G+ ++++GDT +L+TAT ++ + + G +P
Sbjct: 15 RTLTVETGQLAKQANGAVMIRYGDTAVLSTATASKEPKPLDFFPLTVNYEERLYAVGKIP 74
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R GR ++ R+I R +R + Q+I + + +
Sbjct: 75 GGFIKR------EGRPSEKAVLASRLIDRPIRPLFADGFRNEVQVISIVMSVDQNCSSEM 128
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
AA+ G+ +A +G +A ++ G + I++ + D+
Sbjct: 129 AAMFGSSLA-------------LSVSDIPFEGPIAGVTVGRIDDQFIINPTVDQLEKSDI 175
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
+ T I V+ A+ ++ + + I LI Q+++++
Sbjct: 176 NLVVAGTKD-AINMVEAGADEVP--EEIMLEAIMFGHEEIKRLIAFQEEIVA 224
>gi|182680754|ref|YP_001828914.1| polynucleotide phosphorylase/polyadenylase [Xylella fastidiosa M23]
gi|187611441|sp|Q87EV0|PNP_XYLFT RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|226704834|sp|B2I730|PNP_XYLF2 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|182630864|gb|ACB91640.1| Polyribonucleotide nucleotidyltransferase [Xylella fastidiosa M23]
gi|307579218|gb|ADN63187.1| polynucleotide phosphorylase/polyadenylase [Xylella fastidiosa
subsp. fastidiosa GB514]
Length = 700
Score = 152 bits (384), Expect = 3e-35, Method: Composition-based stats.
Identities = 41/243 (16%), Positives = 85/243 (34%), Gaps = 18/243 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
+R+ GR +R I++ V GS L G+T + TL + +V +
Sbjct: 315 VRIDGRSLEAVRPITVKVGVLPRVHGSGLFTRGETQAIVVTTLGTARDGQVIDAVTGEYK 374
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P S G + R+ G + R + +V+ I +
Sbjct: 375 ENFLFHYNFPPYSVGECGRFGVPKRREIGHGRL----ARRGVLAVMPSLDEFPYTIRVVS 430
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
++ +++G + A++ G+ +AL D ++ + V +G +
Sbjct: 431 EITESNGSSSMASVCGSSLALMDAGVPVKAPVAGIAMGLVKEGERFVVLSD--------- 481
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T G + +Q + +++ L AK ++
Sbjct: 482 ILGDEDHLGDMDFKVAGTSEG-VSALQMDIKIEGITEEIMRQALQQAKVGRLHILGEMDK 540
Query: 237 VIS 239
++
Sbjct: 541 ALA 543
Score = 93.8 bits (231), Expect = 2e-17, Method: Composition-based stats.
Identities = 45/232 (19%), Positives = 80/232 (34%), Gaps = 27/232 (11%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTKHGWITAEYGMLPR 68
++L V++ A G+ +VK DT LL T T E + + G +P
Sbjct: 15 VTLETGEVARQASGAVIVKMDDTVLLVTVVAAKTAREGQDFFPLTVDYQEKFYAGGRIPG 74
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
S R GR + I R+I R +R + QII + +
Sbjct: 75 SFFKR------EGRATEKETLISRLIDRPIRPLFPEDYKNEVQIIAMVMSLDPEIDGDIP 128
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+ GA AL KG + A G G I++ E ++
Sbjct: 129 AMIGASAALSLAGI-------------PFKGPIGAAKVGYNDGQYILNPTVSELKKSQLE 175
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
T + ++ V+ +E A S++ + + +I++ + +
Sbjct: 176 LVVAGTAN-AVLMVE--SEAALLSEEVMLGAVIFGHREMQKVIQVIDSLTAE 224
>gi|313891639|ref|ZP_07825246.1| polyribonucleotide nucleotidyltransferase [Dialister
microaerophilus UPII 345-E]
gi|313119917|gb|EFR43102.1| polyribonucleotide nucleotidyltransferase [Dialister
microaerophilus UPII 345-E]
Length = 697
Score = 152 bits (384), Expect = 3e-35, Method: Composition-based stats.
Identities = 45/244 (18%), Positives = 85/244 (34%), Gaps = 18/244 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
+R GR +++R I+ + GS L G T LT TL E ++ +
Sbjct: 311 IRPDGRALDEIRPITCEVGMIPRTHGSALFTRGQTQALTITTLAPMNETQIIDDLTLVNE 370
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
+Y G R+ G RAL V+ I +
Sbjct: 371 KRYIHQYNFPSYCVGETKSSRGPGRREIGHGAL----AERALEPVIPSVDEFPYAIRVVS 426
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
++++++G + A++ G+ ++L + + + V +G + D
Sbjct: 427 EILESNGSSSQASVCGSTMSLMNAGVPIHAPVAGIAMGLVNEGE---------HFTILTD 477
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED+ D+D T G I +Q + S++ A L A ++ +
Sbjct: 478 IQGMEDALGDMDFKVAGTAKG-ITAIQMDIKIHGLSREILMAALKQAHKGRMFILGKIAE 536
Query: 237 VISN 240
IS
Sbjct: 537 CISK 540
Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats.
Identities = 45/236 (19%), Positives = 85/236 (36%), Gaps = 28/236 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKHGWITAEYGML 66
R + + ++K A GS LV++GDT +L T E + + G +
Sbjct: 12 RPLIIETGKMAKQASGSVLVRYGDTVVLVATTWSKEPREGTDFFPLTVDYEEKMYSVGKM 71
Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
P R GR G + R+I R +R + D ++ + D
Sbjct: 72 PGGFLRR------EGRPGNSAVLNARLIDRPIRPLFDKRCRHDVHVVATVLSVDYDNAPE 125
Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
+ G ++ G VA + G + G +V+ +
Sbjct: 126 LCGLLG-------------ASASIAISDIPWDGPVAGVRVGKVDGEFVVNPTQEQLERST 172
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNEV 242
++ +++ I+ V+G A+ A S++ + A I L++ QK +I +V
Sbjct: 173 MNITVAGSET-AILMVEGGAKEA--SEEEVLDAIMYAHTVIKQLVEFQKKII-EKV 224
>gi|299144054|ref|ZP_07037134.1| polyribonucleotide nucleotidyltransferase [Peptoniphilus sp. oral
taxon 386 str. F0131]
gi|298518539|gb|EFI42278.1| polyribonucleotide nucleotidyltransferase [Peptoniphilus sp. oral
taxon 386 str. F0131]
Length = 714
Score = 152 bits (384), Expect = 3e-35, Method: Composition-based stats.
Identities = 48/244 (19%), Positives = 91/244 (37%), Gaps = 18/244 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
+R GR+ +++R +S + GS L G T +L+ ATL + +V + + K
Sbjct: 311 IRPDGRKLDEIRHLSSETGILPRTHGSGLFTRGQTQVLSIATLAGLSDVQVIDGLGDDKP 370
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P S G+ R+ G +AL V+ I +
Sbjct: 371 KRYIHHYNFPPFSVGDTKPMRGPGRREIGHGAL----AEKALLPVIPTEEEFPYAIRVVS 426
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V+ ++G + A++ G+ +AL D ++ + + + + D
Sbjct: 427 EVLSSNGSSSQASVCGSTLALMDAGVPIKAPVAGIAMGLIEEN---------GITKILTD 477
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T G I +Q + S++ L AK ++++
Sbjct: 478 IQGLEDHFGDMDFKVAGTKEG-ITAIQMDIKVEGISKEVLAVALERAKKARLEILEHLNT 536
Query: 237 VISN 240
IS
Sbjct: 537 TISE 540
Score = 108 bits (268), Expect = 9e-22, Method: Composition-based stats.
Identities = 44/236 (18%), Positives = 81/236 (34%), Gaps = 28/236 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKHGWITAEYGML 66
R + +T V++ A G+CLV++GDT +L T T + + + + G +
Sbjct: 12 RTLKVTVGKVAEQANGACLVEYGDTVVLVTVTASKTPRDGIDFFPLSVDFEEKMYAVGKM 71
Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
P R G+ +S R+I R +R + Q++ + D
Sbjct: 72 PGGFIKR------EGKPSEKSILSSRLIDRPIRPLFPEGYRNDVQVVATVLSVDQDCQPD 125
Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
+ G+ +A G ++ G + G IV+ E D
Sbjct: 126 IVGMIGSSIA-------------LSISDIPFDGPTGSVLVGYVDGKYIVNPTETEREKSD 172
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNEV 242
+ T + I+ V+ A S++ + A + I + I EV
Sbjct: 173 IYLVVSGTKT-AIMMVEAGANI--VSEETMLNAILTAHEEIKKICDFVDQ-IKAEV 224
>gi|170719911|ref|YP_001747599.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas putida
W619]
gi|226702679|sp|B1J2B3|PNP_PSEPW RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|169757914|gb|ACA71230.1| Polyribonucleotide nucleotidyltransferase [Pseudomonas putida W619]
Length = 701
Score = 152 bits (384), Expect = 3e-35, Method: Composition-based stats.
Identities = 44/243 (18%), Positives = 92/243 (37%), Gaps = 18/243 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +R +++ V GS L G+T L ATL + ++ + K
Sbjct: 316 RIDGRDTKTVRPLNIEVGVLPKTHGSALFTRGETQALVVATLGTARDAQLLDTLEGEKKD 375
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + R+ G + R++++++ + + I + +
Sbjct: 376 PFMLHYNFPPFSVGECGRMGGAGRREIGHGRL----ARRSVQAMLPAADVFPYTIRVVSE 431
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ GA +AL D M+ + V +G A+ +
Sbjct: 432 ITESNGSSSMASVCGASLALMDAGVPMKAPVAGIAMGLVKEGEKFAVLTD---------I 482
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T G + +Q + +++ L A + +++ +
Sbjct: 483 LGDEDHLGDMDFKVAGTAKG-VTALQMDIKINGITEEIMEIALGQALEARLNILGQMNQI 541
Query: 238 ISN 240
I
Sbjct: 542 IGQ 544
Score = 99.1 bits (245), Expect = 4e-19, Method: Composition-based stats.
Identities = 34/234 (14%), Positives = 76/234 (32%), Gaps = 29/234 (12%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTH-LLTTATLEEKVPM----WIRNTKHGWITAEYGMLP 67
++L +++ A G+ LV + +L T ++ + + + T G +P
Sbjct: 15 VTLETGRIARQATGAVLVTVDNDVTVLVTVVGAKQADPGKGFFPLSVHYQEKTYAAGKIP 74
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R GR + R+I R +R + + Q++
Sbjct: 75 GGFFKR------EGRPSEKETLTSRLIDRPIRPLFPEGFMNEVQVVCTVVSTSKKTDPDI 128
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY-PIVDLDYGEDSTID 186
AA+ G A +G + A +++ Y + +
Sbjct: 129 AAMIGTSAA-------------LAISGIPFEGPIGAARVAFHESTGYLLNPTYEQLAASS 175
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
+D T ++ V+ A+ ++D + A D +I+ K++ +
Sbjct: 176 LDMVVAGTSD-AVLMVESEAQE--LTEDQMLGAVLFAHDEFQAVIQAVKELAAE 226
>gi|83589904|ref|YP_429913.1| polynucleotide phosphorylase/polyadenylase [Moorella thermoacetica
ATCC 39073]
gi|123524642|sp|Q2RJL9|PNP_MOOTA RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|83572818|gb|ABC19370.1| Polyribonucleotide nucleotidyltransferase [Moorella thermoacetica
ATCC 39073]
Length = 747
Score = 152 bits (384), Expect = 3e-35, Method: Composition-based stats.
Identities = 48/244 (19%), Positives = 86/244 (35%), Gaps = 18/244 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
+R+ GR ++R I+ V GS L G+T +LT TL +E++ + +
Sbjct: 330 IRVDGRTLEEIRPITCEVGVLSRTHGSGLFTRGETQVLTVTTLGPISDEQILDDLGVDES 389
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P S G A R+ G RAL ++ I +
Sbjct: 390 KRYMHHYNFPPYSVGEARPIRAPGRREIGHGAL----AERALEPMIPSEEEFPYAIRLVS 445
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V+ ++G T ++ G+ ++L D ++ + V + AI
Sbjct: 446 EVLGSNGSTSMGSVCGSTLSLMDAGVPIKAPVAGVAMGLVKENDQVAILTD--------- 496
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED+ D+D T G I +Q + A + L A+ ++
Sbjct: 497 IQGLEDALGDMDFKVAGTKKG-ITALQMDIKIAGIDRSILERALEQARRGRLFILDKILA 555
Query: 237 VISN 240
I
Sbjct: 556 TIPE 559
Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats.
Identities = 43/230 (18%), Positives = 85/230 (36%), Gaps = 27/230 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEK----VPMWIRNTKHGWITAEYGML 66
R+++L ++K A G+ +V +G T +L TAT E+ + + + G +
Sbjct: 14 RDLTLETGRLAKQAGGAVMVSYGGTMVLVTATASEEPREGIDFFPLTVDYEERLYAAGKI 73
Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
P R GR ++ R+I R +R + ++ + D
Sbjct: 74 PGGFIKR------EGRPSEKAILSARLIDRPIRPLFPKFYRNDVHVVATVMSVDQDCPPN 127
Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
A I GA AL + G + A+S G++ P+++ EDS
Sbjct: 128 VAGIIGASAALM-------------LSAIPFAGPIGAVSVGLIDNRPVINPTLEEDSRSS 174
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
++ T + I+ V+ A+ +D + + I ++ +
Sbjct: 175 LNLTVAGTAN-AIMMVEAGAKEVP--EDLMLECIMQGHEEIKRIVAFINE 221
>gi|187611440|sp|Q9PGQ9|PNP_XYLFA RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
Length = 700
Score = 152 bits (384), Expect = 3e-35, Method: Composition-based stats.
Identities = 41/243 (16%), Positives = 85/243 (34%), Gaps = 18/243 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
+R+ GR +R I++ V GS L G+T + TL + +V +
Sbjct: 315 VRIDGRSLEAVRPITVKVGVLPRVHGSGLFTRGETQAIVVTTLGTARDGQVIDAVTGEYK 374
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P S G + R+ G + R + +V+ I +
Sbjct: 375 ENFLFHYNFPPYSVGECGRFGVPKRREIGHGRL----ARRGVLAVMPSLDEFPYTIRVVS 430
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
++ +++G + A++ G+ +AL D ++ + V +G +
Sbjct: 431 EITESNGSSSMASVCGSSLALMDAGVPVKAPVAGIAMGLVKEGERFVVLSD--------- 481
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T G + +Q + +++ L AK ++
Sbjct: 482 ILGDEDHLGDMDFKVAGTSEG-VSALQMDIKIEGITEEIMRQALQQAKVGRLHILGEMDK 540
Query: 237 VIS 239
++
Sbjct: 541 ALA 543
Score = 94.5 bits (233), Expect = 1e-17, Method: Composition-based stats.
Identities = 45/232 (19%), Positives = 80/232 (34%), Gaps = 27/232 (11%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTKHGWITAEYGMLPR 68
++L V++ A G+ +VK DT LL T T E + + G +P
Sbjct: 15 VTLETGEVARQANGAVIVKMDDTVLLVTVVAAKTAREGQDFFPLTVDYQEKFYAGGRIPG 74
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
S R GR + I R+I R +R + QII + +
Sbjct: 75 SFFKR------EGRATEKETLISRLIDRPIRPLFPEDYKNEVQIIAMVMSLDPEIDGDIP 128
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+ GA AL KG + A G G I++ E ++
Sbjct: 129 AMIGASAALSLAGI-------------PFKGPIGAAKIGYNDGQYILNPTVSELKKSQLE 175
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
T + ++ V+ +E A S++ + + +I++ + +
Sbjct: 176 LVVAGTAN-AVLMVE--SEAALLSEEVMLGAVIFGHREMQKVIQVIDSLTAE 224
>gi|167035698|ref|YP_001670929.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas putida
GB-1]
gi|189037313|sp|B0KHX3|PNP_PSEPG RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|166862186|gb|ABZ00594.1| Polyribonucleotide nucleotidyltransferase [Pseudomonas putida GB-1]
Length = 701
Score = 152 bits (384), Expect = 3e-35, Method: Composition-based stats.
Identities = 44/243 (18%), Positives = 92/243 (37%), Gaps = 18/243 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +R +++ V GS L G+T L ATL + ++ + K
Sbjct: 316 RIDGRDTKTVRPLNIEVGVLPKTHGSALFTRGETQALVVATLGTARDAQLLDTLEGEKKD 375
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + R+ G + R++++++ + + I + +
Sbjct: 376 PFMLHYNFPPFSVGECGRMGGAGRREIGHGRL----ARRSVQAMLPAADVFPYTIRVVSE 431
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ GA +AL D M+ + V +G A+ +
Sbjct: 432 ITESNGSSSMASVCGASLALMDAGVPMKAPVAGIAMGLVKEGEKFAVLTD---------I 482
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T G + +Q + +++ L A + +++ +
Sbjct: 483 LGDEDHLGDMDFKVAGTAKG-VTALQMDIKINGITEEIMEIALGQALEARLNILGQMNQI 541
Query: 238 ISN 240
I
Sbjct: 542 IGQ 544
Score = 98.4 bits (243), Expect = 7e-19, Method: Composition-based stats.
Identities = 34/234 (14%), Positives = 76/234 (32%), Gaps = 29/234 (12%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTH-LLTTATLEEKVPM----WIRNTKHGWITAEYGMLP 67
++L +++ A G+ LV + +L T ++ + + + T G +P
Sbjct: 15 VTLETGRIARQATGAVLVTVDNDVTVLVTVVGAKQADPGKGFFPLSVHYQEKTYAAGKIP 74
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R GR + R+I R +R + + Q++
Sbjct: 75 GGFFKR------EGRPSEKETLTSRLIDRPIRPLFPEGFMNEVQVVCTVVSTSKKTDPDI 128
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY-PIVDLDYGEDSTID 186
AA+ G A +G + A +++ Y + +
Sbjct: 129 AAMIGTSAA-------------LAISGIPFEGPIGAARVAFHESTGYLLNPTYEQLAASS 175
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
+D T ++ V+ A+ ++D + A D +I+ K++ +
Sbjct: 176 LDMVVAGTAD-AVLMVESEAQE--LTEDQMLGAVLFAHDEFQAVIQAVKELAAE 226
>gi|169333888|ref|ZP_02861081.1| hypothetical protein ANASTE_00274 [Anaerofustis stercorihominis DSM
17244]
gi|169259453|gb|EDS73419.1| hypothetical protein ANASTE_00274 [Anaerofustis stercorihominis DSM
17244]
Length = 711
Score = 152 bits (384), Expect = 3e-35, Method: Composition-based stats.
Identities = 45/242 (18%), Positives = 87/242 (35%), Gaps = 18/242 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
+R GR+ +++R I+ + A GS L G T +++ ATL +E++ I
Sbjct: 311 IRPDGRKVDEIRPITCEVGKIRRAHGSGLFTRGQTQVMSMATLGAIRDEQIIDGIGEETS 370
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y S G R+ G RAL V+ I +
Sbjct: 371 KKYIHHYNFPAYSVGETGPMRGPGRREIGHGAL----AERALLPVIPDQKDFPYTIRVVS 426
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V+ ++G T A++ G+ ++L D ++ + + + + ++
Sbjct: 427 EVLASNGSTSQASVCGSTLSLMDAGVPIKAPVAGIAMGLIKEENKVSVLSD--------- 477
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T G I +Q + + L AK ++ ++
Sbjct: 478 IQGVEDFYGDMDFKVAGTSEG-ITAIQMDIKIKGIDKAILTEALARAKKGRFHILGKMEE 536
Query: 237 VI 238
I
Sbjct: 537 AI 538
Score = 108 bits (269), Expect = 7e-22, Method: Composition-based stats.
Identities = 45/234 (19%), Positives = 86/234 (36%), Gaps = 27/234 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----HGWITAEYGML 66
RE+ + +++ A GS + +GDT +L A + ++ I + G +
Sbjct: 12 RELCVEVGELAQMANGSVFISYGDTQILVNACMSKEAKEGIDFFPLSVFYEEKMYSVGKI 71
Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
P R GR ++ R+I R LR + D QI+ + D
Sbjct: 72 PGGFLKR------EGRASEKATLTCRLIDRPLRPLFDKGFRNDVQIVATVMGVDQDNSPE 125
Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
+I GA +A G V A++ G++ G + + + D
Sbjct: 126 ITSILGASLA-------------LGISDIPFDGPVGAVNVGLIDGELVYNPTSDQRDISD 172
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
+ T ++ V+ A S++ + A + I ++IK Q+++I
Sbjct: 173 LSLTVAGTSE-AVLMVEAGANE--VSEEIMIDAIMGAHEHIKEIIKFQEEIIKE 223
>gi|332528747|ref|ZP_08404724.1| polynucleotide phosphorylase/polyadenylase [Hylemonella gracilis
ATCC 19624]
gi|332041813|gb|EGI78162.1| polynucleotide phosphorylase/polyadenylase [Hylemonella gracilis
ATCC 19624]
Length = 717
Score = 152 bits (384), Expect = 3e-35, Method: Composition-based stats.
Identities = 41/243 (16%), Positives = 87/243 (35%), Gaps = 18/243 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +R I + V GS L G+T L TL + + +
Sbjct: 317 RIDGRDTRTVRPIEIRDSVLPRTHGSALFTRGETQALVITTLGTERDAQRIDALAGEFED 376
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y M P +TG + R+ G + RAL +V+ + + +
Sbjct: 377 RFMLHYNMPPFATGETGRVGTPKRREIGHGRL----AKRALVAVLPTKEEFPYTMRVVSE 432
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ G ++L + ++ + + + + A+ +
Sbjct: 433 ITESNGSSSMASVCGGCLSLMNAGVPLKAHVAGIAMGLIKEDNKFAVLTD---------I 483
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T +G I +Q + +++ L AK+ ++ +
Sbjct: 484 LGDEDHLGDMDFKVAGTTNG-ITALQMDIKIQGITREIMQVALAQAKEARMHILGKMQAA 542
Query: 238 ISN 240
+
Sbjct: 543 VGE 545
Score = 93.8 bits (231), Expect = 2e-17, Method: Composition-based stats.
Identities = 34/233 (14%), Positives = 74/233 (31%), Gaps = 31/233 (13%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT----KHGWITAEYGMLPR 68
+++ +++ + G+ LV DT +L T + + + G +P
Sbjct: 18 VTMETGEIARQSSGAVLVNVDDTVVLATVVASKSAKPGQDFFPLTVDYLEKSYAAGKIPG 77
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
S R GR R+I R +R + Q++I + +
Sbjct: 78 SFFKR------EGRPSEYETLTSRLIDRPIRPLFPEGFFNEVQVVIHTVSLNPEVDADIP 131
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+ A G + A G + G +++ + +D
Sbjct: 132 AMIATSAA-------------LAISGIPFNGPIGAARVGYINGEYVLNPGQTQRKDSQMD 178
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAML----NLAKDRIADLIKLQKDV 237
T++ ++ V+ A + S++ + + K I + L +D
Sbjct: 179 LVVAGTET-AVLMVESEALQ--LSEEIMLGAVVFGHDQGKIAINAIHDLVRDA 228
>gi|255349247|ref|ZP_05381254.1| polynucleotide phosphorylase/polyadenylase [Chlamydia trachomatis
70]
gi|255503784|ref|ZP_05382174.1| polynucleotide phosphorylase/polyadenylase [Chlamydia trachomatis
70s]
Length = 695
Score = 152 bits (384), Expect = 4e-35, Method: Composition-based stats.
Identities = 47/244 (19%), Positives = 89/244 (36%), Gaps = 18/244 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT--LEEKVPMWIRNTKHG- 57
+R+ GR ++R IS+ GSCL G+T + T E + G
Sbjct: 314 IRVDGRTTTEIRPISIETPFLPRTHGSCLFTRGETQSMAVCTLGGENMAQRFEDLNGDGA 373
Query: 58 -WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
+Y P S G + + R+ G + +AL V+ ++ I ++
Sbjct: 374 ARFYLQYFFPPFSVGEVGRIGSPGRREIGHGKL----AEKALSHVLPETSRFPYIIRLES 429
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
++ +++G + A++ G +AL D ++ + +L A I
Sbjct: 430 NITESNGSSSMASVCGGCLALMDAGVPIKAPVAGIAMGLILDRDQAIILSD--------- 480
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T G I Q + + L AK + ++ L
Sbjct: 481 ISGIEDHLGDMDFKVAGTAKG-ITAFQMDIKIEGITHKIMEQALAQAKQGRSHILNLMTQ 539
Query: 237 VISN 240
V+++
Sbjct: 540 VLAS 543
Score = 91.1 bits (224), Expect = 1e-16, Method: Composition-based stats.
Identities = 37/235 (15%), Positives = 73/235 (31%), Gaps = 29/235 (12%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLL---TTATLEEKVPMWIRNTKHGWITAEYGMLPRS 69
+ +++ A G+ LVK +T + A+L E V + + G
Sbjct: 16 LIFETGKIARQASGAVLVKMNETWVFSSACAASLSEAVDFLPFRVDYQEKFSSAGRTSGG 75
Query: 70 TGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAA 129
R GR R + R++ R+LR + Q++ A
Sbjct: 76 FLKR------EGRPSEREILVSRLMDRSLRPSFPNRLMQDIQVLSYVWSYDGKTLPDPLA 129
Query: 130 ITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDA 189
I GA A VA + G++ G +++ E S +D
Sbjct: 130 ICGASAA-------------LAISEVPQNCIVAGVRVGLVGGKWVINPTRDELSASKLDL 176
Query: 190 NFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK---DVISNE 241
T S ++ ++ +++ + + IA + + I +
Sbjct: 177 VMAGTAS-AVLMIE--GHCDFLTEEQVLEAIAFGQTYIAKICDAIEAWQKAIGKQ 228
>gi|224585533|ref|YP_002639332.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar
Paratyphi C strain RKS4594]
gi|224470061|gb|ACN47891.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar
Paratyphi C strain RKS4594]
Length = 228
Score = 152 bits (384), Expect = 4e-35, Method: Composition-based stats.
Identities = 119/230 (51%), Positives = 155/230 (67%), Gaps = 2/230 (0%)
Query: 11 MREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRST 70
MR ++LTR +K+AEGS LV+FGDT +L TA++EE VP +++ GWITAEYGMLPR+T
Sbjct: 1 MRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWITAEYGMLPRAT 60
Query: 71 GNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAI 130
R REA G+QGGR+ EIQR+I RALR+ VDL LG I +DCDV+QADGGTRTA+I
Sbjct: 61 HTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKTLGEFTITLDCDVVQADGGTRTASI 120
Query: 131 TGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDAN 190
TGA VAL D L + + +KG VAA+S G++ G I DL+Y EDS + D N
Sbjct: 121 TGACVALADALNKLVAN--GKLKTNPMKGMVAAVSVGIVNGEAICDLEYVEDSAAETDMN 178
Query: 191 FVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
VMT+ G I+EVQG+AE FS + +L LA+ I ++ QK + N
Sbjct: 179 VVMTEDGRIIEVQGTAEGEPFSHEELLTLLALARGGIESIVATQKAALEN 228
>gi|307546723|ref|YP_003899202.1| polynucleotide phosphorylase/polyadenylase [Halomonas elongata DSM
2581]
gi|307218747|emb|CBV44017.1| polynucleotide phosphorylase/polyadenylase [Halomonas elongata DSM
2581]
Length = 710
Score = 152 bits (384), Expect = 4e-35, Method: Composition-based stats.
Identities = 37/243 (15%), Positives = 82/243 (33%), Gaps = 18/243 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +R + + GS + G+T + ATL + ++ + +
Sbjct: 316 RIDGRDLKTVRPLDIEVGSLPKTHGSAIFTRGETQAVVVATLGTLRDAQLIESLEGERKD 375
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P G R+ G + R + +++ I + +
Sbjct: 376 RFLLHYNFPPYCVGEAGFMGGPKRREIGHGRL----ARRGVEAMLPSEDEFPYTIRVVSE 431
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ G+ +AL D M+ + V A+ +
Sbjct: 432 ITESNGSSSMASVCGSSLALMDAGVPMKAPVAGIAMGLVKDEDGFAVLTD---------I 482
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D + G + +Q + +++ L A + +++ V
Sbjct: 483 LGDEDHLGDMDFKVAGSAEG-VTALQMDIKIEGINEEIMEQALQQAHEARLHILEQMNTV 541
Query: 238 ISN 240
I
Sbjct: 542 IGQ 544
Score = 101 bits (251), Expect = 9e-20, Method: Composition-based stats.
Identities = 37/242 (15%), Positives = 79/242 (32%), Gaps = 33/242 (13%)
Query: 5 GRQENQMREISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKV----PMWIRNTKHGWI 59
GR ++L +++ A G+ +V DT +L T ++ V P + + +
Sbjct: 11 GRST-----VTLETGRIARQASGAVMVTMDDTVVLCTVVAKKDVNPSQPFFPLSVHYQEK 65
Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119
T G +P R GR + R+I R +R + + Q+I
Sbjct: 66 TYAVGKIPGGFFKR------EGRPTEKETLTSRLIDRPIRPLFPKGFMNEVQVICTVLST 119
Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY-PIVDLD 178
+ AA+ G A G + A G + ++
Sbjct: 120 DRNHDPDIAAMIGTSAA-------------LAISGVPFNGPIGAARVGFTEEHGYFLNPS 166
Query: 179 YGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
E ++ +++ T+ ++ V+ A +D + + I +++
Sbjct: 167 VEELASSELNMVVAGTEK-AVLMVESEANE--LLEDEMLGAVLYGHQEMQVAINAIQELA 223
Query: 239 SN 240
+
Sbjct: 224 AE 225
>gi|296330884|ref|ZP_06873359.1| polynucleotide phosphorylase/polyadenylase [Bacillus subtilis
subsp. spizizenii ATCC 6633]
gi|305674402|ref|YP_003866074.1| polynucleotide phosphorylase/polyadenylase [Bacillus subtilis
subsp. spizizenii str. W23]
gi|296151889|gb|EFG92763.1| polynucleotide phosphorylase/polyadenylase [Bacillus subtilis
subsp. spizizenii ATCC 6633]
gi|305412646|gb|ADM37765.1| polynucleotide phosphorylase/polyadenylase [Bacillus subtilis
subsp. spizizenii str. W23]
Length = 705
Score = 152 bits (384), Expect = 4e-35, Method: Composition-based stats.
Identities = 45/244 (18%), Positives = 85/244 (34%), Gaps = 18/244 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56
+R GR +Q+R +S + GS L G T L+ T + ++ + +
Sbjct: 315 VRPDGRGVDQIRPLSSEVGLLPRTHGSGLFTRGQTQALSVCTLGALGDVQILDGLGVEES 374
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y S G R+ G RAL V+ + +
Sbjct: 375 KRFMHHYNFPQFSVGETGPMRGPGRREIGHGALG----ERALEPVIPSEKDFPYTVRLVS 430
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V++++G T A+I + +A+ D ++ + V G + D
Sbjct: 431 EVLESNGSTSQASICASTLAMMDAGVPIKAPVAGIAMGLVKSGE---------HYTVLTD 481
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED+ D+D TD G + +Q + S++ L AK +++
Sbjct: 482 IQGMEDALGDMDFKVAGTDKG-VTALQMDIKIEGLSREILEEALQQAKKGRMEILNSMLA 540
Query: 237 VISN 240
+S
Sbjct: 541 TLSE 544
Score = 116 bits (289), Expect = 3e-24, Method: Composition-based stats.
Identities = 40/232 (17%), Positives = 89/232 (38%), Gaps = 26/232 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKV---PMWIRNTKHGWITAEYGMLP 67
R +++ ++K A G+ ++++GDT +L+TAT ++ + + G +P
Sbjct: 15 RTLTVETGQLAKQANGAVMIRYGDTAVLSTATASKEPKPLDFFPLTVNYEERLYAVGKIP 74
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R GR ++ R+I R +R + Q+I + D +
Sbjct: 75 GGFIKR------EGRPSEKAVLASRLIDRPIRPLFADGFRNEVQVISIVMSVDQDCSSEM 128
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
AA+ G+ +A +G +A ++ G + I++ + D+
Sbjct: 129 AAMFGSSLA-------------LSVSDIPFEGPIAGVTVGRIDDQFIINPTVDQLEKSDI 175
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
+ T I V+ A+ ++ + + I LI Q+++++
Sbjct: 176 NLVVAGTKD-AINMVEAGADEVP--EETMLEAIMFGHEEIKRLIAFQEEIVA 224
>gi|188586076|ref|YP_001917621.1| Polyribonucleotide nucleotidyltransferase [Natranaerobius
thermophilus JW/NM-WN-LF]
gi|226702667|sp|B2A3A3|PNP_NATTJ RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|179350763|gb|ACB85033.1| Polyribonucleotide nucleotidyltransferase [Natranaerobius
thermophilus JW/NM-WN-LF]
Length = 718
Score = 152 bits (384), Expect = 4e-35, Method: Composition-based stats.
Identities = 44/243 (18%), Positives = 89/243 (36%), Gaps = 18/243 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHG 57
R GR + ++R ++ + GS L G T +L T + ++ + +
Sbjct: 322 RPDGRGQKEIRPVTCDVDLLPNTHGSGLFTRGQTQVLNVCTLGALGDVQILDGLDIEESK 381
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + R+ G RAL+ ++ I + +
Sbjct: 382 RYMHHYNFPPYSVGEAGFMKGPGRREIGHGAL----AERALKPMIPTEKDFPYTIRLVSE 437
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
V++++G T ++ + ++L D +E + + + +G AI +
Sbjct: 438 VLESNGSTSMGSVCASSLSLMDAGVPIEKAVSGIAMGLIKEGDQLAILSD---------I 488
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T+ G I +Q + + +++ L KD ++ + K
Sbjct: 489 QGIEDFLGDMDFKVAGTEDG-ITALQMDIKISGTTREILKQALKQGKDGYLHILNIMKQT 547
Query: 238 ISN 240
IS
Sbjct: 548 ISE 550
Score = 117 bits (293), Expect = 1e-24, Method: Composition-based stats.
Identities = 41/232 (17%), Positives = 81/232 (34%), Gaps = 27/232 (11%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT----KHGWITAEYGMLPR 68
++L ++K A G+ V++G+T +L TAT ++ + + G +P
Sbjct: 14 LTLETGELAKQANGAVKVQYGNTVVLVTATASKEPKDDLNFFPLTVDYEERLYAVGKIPG 73
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
R G+ ++ R+ R +R + I+ + + A
Sbjct: 74 GFIKR------EGKPTEKATLTARLTDRPIRPLFPDGFRNPVHIVSTVLSVDQNCPPEIA 127
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
+I GA A G +A++ G + +V D E +D
Sbjct: 128 SIIGASAA-------------LSISDIPFDGPIASVKVGKVNDEIVVTPDVDEHEESQLD 174
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
T I+ V+ AE +D + A + I +I +Q+ ++
Sbjct: 175 LVVAGTKD-AIMMVE--AEANELPEDEMLEAIMKAHEEIKKIITMQEQLVEQ 223
>gi|322435940|ref|YP_004218152.1| polyribonucleotide nucleotidyltransferase [Acidobacterium sp.
MP5ACTX9]
gi|321163667|gb|ADW69372.1| polyribonucleotide nucleotidyltransferase [Acidobacterium sp.
MP5ACTX9]
Length = 817
Score = 152 bits (384), Expect = 4e-35, Method: Composition-based stats.
Identities = 48/244 (19%), Positives = 86/244 (35%), Gaps = 18/244 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
+R R +Q+R +++ V GS L G+T L +ATL + +
Sbjct: 314 IRPDHRAFDQIRLVTVETGVLPRVHGSALFTRGETQALVSATLGTTDDAQRMESYTGEFK 373
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P S G + V R+ G RA+ +V+ + +
Sbjct: 374 RRFMLHYNFPPFSVGEVGRMTGVGRREIGHGAL----AWRAIEAVLPGEDESPYTLRVVS 429
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
D+++++G + A + GA +AL ++ + V +G AI
Sbjct: 430 DILESNGSSSMATVCGASLALMAAGIPLKGAVAGVAMGLVKEGDKYAILTD--------- 480
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T G I +Q + + L A+ +L+
Sbjct: 481 IAGAEDHYGDMDFKVAGTRKG-ITALQMDIKIMGITPQIMREALEQARRGRLELLDTMDA 539
Query: 237 VISN 240
IS+
Sbjct: 540 TISS 543
Score = 104 bits (258), Expect = 1e-20, Method: Composition-based stats.
Identities = 43/231 (18%), Positives = 78/231 (33%), Gaps = 27/231 (11%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKHGWITAEYGMLPR 68
I ++K A G+ GD +L TA E + + ++ T G +P
Sbjct: 15 IKFETGRMAKQASGAAFTTSGDNAILATAVASPDPKEGIDFFPLTVEYREFTYAGGRIPG 74
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
R GR + R I R +R + + Q++ +
Sbjct: 75 GFIKR------EGRPSEKEILTSRQIDRPIRPLFPEAFRNETQVVAFVYSADKENDPDVL 128
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
I GA A G V A+ G++ G IV+ Y E +++
Sbjct: 129 GINGASCA-------------LALSDIPFHGPVGAVRVGLIEGNFIVNPTYAEREKSELN 175
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
V T G IV V+ ++ S++ + + A I + ++++
Sbjct: 176 IMVVGTADG-IVMVESGSKET--SEESVVSAIEFAHVEIKKICAAIEELVK 223
>gi|254166930|ref|ZP_04873784.1| ribonuclease PH [Aciduliprofundum boonei T469]
gi|254168500|ref|ZP_04875344.1| ribonuclease PH [Aciduliprofundum boonei T469]
gi|289596090|ref|YP_003482786.1| ribonuclease PH [Aciduliprofundum boonei T469]
gi|197622555|gb|EDY35126.1| ribonuclease PH [Aciduliprofundum boonei T469]
gi|197624540|gb|EDY37101.1| ribonuclease PH [Aciduliprofundum boonei T469]
gi|289533877|gb|ADD08224.1| ribonuclease PH [Aciduliprofundum boonei T469]
Length = 234
Score = 152 bits (384), Expect = 4e-35, Method: Composition-based stats.
Identities = 101/239 (42%), Positives = 148/239 (61%), Gaps = 6/239 (2%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR R+ +++R + + K GS L+K GDT +L +A + E VP W++ GW+T
Sbjct: 1 MR--NRKPDEIRNVEIIPNYQKKPYGSALIKQGDTVVLCSAQVIENVPDWLKEQNSGWLT 58
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEY MLP S+ R+ R+ GRS+EI+R+IGR LR+ VDL LG R I IDCDVIQ
Sbjct: 59 AEYSMLPGSSETRIFRDRGHV--NGRSKEIERIIGRCLRAAVDLKKLGPRTIWIDCDVIQ 116
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+IT +VAL ++ + +K VAAIS G++ G P++DL Y
Sbjct: 117 ADGGTRTASITAGFVALSLAIRRLMKE--GKLGENPIKYKVAAISAGIVNGEPLLDLAYE 174
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
EDS DVD N M + G +E+QG++E+ S+++ +L+LA+ I +L K Q++ ++
Sbjct: 175 EDSQADVDINIAMNEEGKYIEIQGTSEKEPLSRENLNILLDLAEKGIKELFKKQEEALN 233
>gi|219849396|ref|YP_002463829.1| polynucleotide phosphorylase/polyadenylase [Chloroflexus aggregans
DSM 9485]
gi|257096672|sp|B8G3Z1|PNP_CHLAD RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|219543655|gb|ACL25393.1| Polyribonucleotide nucleotidyltransferase [Chloroflexus aggregans
DSM 9485]
Length = 755
Score = 152 bits (384), Expect = 4e-35, Method: Composition-based stats.
Identities = 46/243 (18%), Positives = 90/243 (37%), Gaps = 17/243 (6%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56
+R+ GR +++R IS+ V GS L G T +LT AT +E+ +
Sbjct: 320 IRVDGRALDEIRPISIEVGVVPRVHGSALFTRGQTQVLTIATLGSPGDEQKVDDLGIETT 379
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P STG + R G R+L +V+ I +
Sbjct: 380 KRYIHHYNFPPFSTGEIRRLGTPRRRDIGHGAL----AERSLYAVLPSEEEFPYTIRLVS 435
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V+ ++G + A++ G+ ++L D ++ + + + + D
Sbjct: 436 EVLSSNGSSSMASVCGSSLSLMDAGVPIKAPVAGVAMGLI--------TGEDGRWRVLTD 487
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED+ D+D T +G + +Q + + + A+ +++
Sbjct: 488 IQGIEDALGDMDFKVAGTANG-VTGLQMDIKTTGITYEIMRQAFAQARAGRLFILEKMNA 546
Query: 237 VIS 239
VIS
Sbjct: 547 VIS 549
Score = 96.1 bits (237), Expect = 4e-18, Method: Composition-based stats.
Identities = 46/232 (19%), Positives = 78/232 (33%), Gaps = 27/232 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKHGWITAEYGML 66
R ++L ++ A+G+ + ++GDT LL T E + + G +
Sbjct: 16 RTLTLEAGRFAEQADGAVVARYGDTMLLATVVCAKEAREGTDFFPLTVDYEEKMYAVGKI 75
Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
P + R GR + I R+ R LR + Q+II I +
Sbjct: 76 PANFFKR------EGRPTTTAILISRLTDRPLRPLFPKGFYNEVQVIITTFSIDMENDPG 129
Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
AI A AL V A+ G L G +V+ GE
Sbjct: 130 PLAIIAASAALAISDIPFAG-------------PVGAVQMGHLDGKLVVNPKMGEIEKSR 176
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
+D T ++ V+ A S+D + + +LQ+ ++
Sbjct: 177 LDLVVAGTKD-AVLMVEAGAYE--LSEDEMLQAVIEGHAVCKQICELQEQLV 225
>gi|114769588|ref|ZP_01447198.1| polyribonucleotide nucleotidyltransferase [alpha proteobacterium
HTCC2255]
gi|114549293|gb|EAU52175.1| polyribonucleotide nucleotidyltransferase [alpha proteobacterium
HTCC2255]
gi|297183954|gb|ADI20075.1| hypothetical protein [uncultured alpha proteobacterium
EB080_L11F12]
gi|297184260|gb|ADI20378.1| hypothetical protein [uncultured alpha proteobacterium
EB080_L27A02]
Length = 709
Score = 152 bits (384), Expect = 4e-35, Method: Composition-based stats.
Identities = 44/243 (18%), Positives = 88/243 (36%), Gaps = 17/243 (6%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR + +R I V GS L G+T L TL +E++ + T
Sbjct: 318 RIDGRDLSTVRPIVSETAVLPRTHGSALFTRGETQALAVTTLGTGDDEQMIDALSGTYRS 377
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + R+ G + RAL++V+ I + +
Sbjct: 378 NFLLHYNFPPYSVGECGRMMGPGRREIGHGKL----AWRALQAVLPPVTEFPYTIRMVSE 433
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ G +++ D + + + + D+
Sbjct: 434 ITESNGSSSMASVCGGSLSMMDAGVPLRAPVAGVAMGLI--------LQDSGEYAVLTDI 485
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T++G I +Q + A + + + AKD ++ +
Sbjct: 486 LGDEDHLGDMDFKVAGTENG-ITSLQMDIKVAGITPEIMEKAMEQAKDGRLHILGEMANA 544
Query: 238 ISN 240
++
Sbjct: 545 LTE 547
Score = 96.1 bits (237), Expect = 3e-18, Method: Composition-based stats.
Identities = 32/228 (14%), Positives = 68/228 (29%), Gaps = 25/228 (10%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVP----MWIRNTKHGWITAEYGMLPR 68
++L +++ A+ + + +G+T +L +K + + G +P
Sbjct: 16 LTLETGKIARQADSTVIATYGETSVLAAVCFAKKEKEGQSFFPLTVNYQEKYYAAGKIPG 75
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
R R + R+I R +R + QI +
Sbjct: 76 GFFKR------EARPTEKETLTARLIDRPIRPLFIPGFKHEVQITLTVLSHDLVNDPDMV 129
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID-- 186
A+ A AL + G P D + + D
Sbjct: 130 AMIAASAALTLSGAPFMG---------PIGNCRVGFEGGQYVLNPTCDDMHELKNNPDQR 180
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
+D T ++ V+ A +++ +N A ++I +I +
Sbjct: 181 LDLVVAGTKD-AVMMVESEAYE--LTEEEMLGAINFAHEQIQPVIDMI 225
>gi|330950302|gb|EGH50562.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas syringae
Cit 7]
Length = 701
Score = 152 bits (384), Expect = 4e-35, Method: Composition-based stats.
Identities = 45/243 (18%), Positives = 92/243 (37%), Gaps = 18/243 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +R +++ V GS L G+T L ATL + ++ + K
Sbjct: 316 RIDGRDTRTVRPLNIEVGVLPKTHGSALFTRGETQALVVATLGTARDAQLLNTLEGEKKD 375
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + R+ G + R++++++ + + I + +
Sbjct: 376 PFMLHYNFPPFSVGECGRMGGAGRREIGHGRL----ARRSVQAMLPGADVFPYTIRVVSE 431
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ GA +AL D M+ + V +G AI +
Sbjct: 432 ITESNGSSSMASVCGASLALMDAGVPMKAPVAGIAMGLVKEGEKFAILTD---------I 482
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T G + +Q + +++ L A + +++ +
Sbjct: 483 LGDEDHLGDMDFKVAGTSKG-VTALQMDIKIKGITEEIMEIALGQALEARLNILGQMNQI 541
Query: 238 ISN 240
I
Sbjct: 542 IGQ 544
Score = 101 bits (250), Expect = 1e-19, Method: Composition-based stats.
Identities = 36/234 (15%), Positives = 73/234 (31%), Gaps = 29/234 (12%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTH-LLTTATLEEKVP----MWIRNTKHGWITAEYGMLP 67
++L +++ A G+ LV D +L T ++ + + + T G +P
Sbjct: 15 VTLETGRIARQASGAVLVTVDDDVSVLVTVVGAKQADAGKGFFPLSVHYQEKTYAAGKIP 74
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R GR + R+I R +R + + Q++
Sbjct: 75 GGFFKR------EGRPSEKETLTSRLIDRPIRPLFPEGFMNEVQVVCTVVSTSKKTDPDI 128
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY-PIVDLDYGEDSTID 186
AA+ G A G V A +++ Y +
Sbjct: 129 AAMIGTSAA-------------LAISGIPFDGPVGAARVAFHESTGYLLNPTYEQLQASS 175
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
+D T ++ V+ A+ ++D + A D +I K++ +
Sbjct: 176 LDMVVAGTSE-AVLMVESEAKE--LTEDQMLGAVLFAHDEFQVVINAIKELAAE 226
>gi|258645480|ref|ZP_05732949.1| polyribonucleotide nucleotidyltransferase [Dialister invisus DSM
15470]
gi|260402833|gb|EEW96380.1| polyribonucleotide nucleotidyltransferase [Dialister invisus DSM
15470]
Length = 694
Score = 152 bits (384), Expect = 4e-35, Method: Composition-based stats.
Identities = 45/249 (18%), Positives = 88/249 (35%), Gaps = 21/249 (8%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
+R GR +++R IS + GS L G T LT TL E ++ +
Sbjct: 311 IRPDGRALDEIRPISCEVGLLPRVHGSALFTRGQTQALTITTLAPMSETQIIDDLTQETE 370
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
+Y S G R+ G RAL V+ I +
Sbjct: 371 KRYIHQYNFPSYSVGETKSSRGPGRREIGHGAL----AERALIPVIPTVEEFPYAIRVVS 426
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
++++++G + A++ G+ ++L + ++ + V +G +
Sbjct: 427 EILESNGSSSQASVCGSTMSLMNAGVPIKAPVAGIAMGLVNEGEHFTVLTD--------- 477
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED+ D+D T G I +Q + S++ A L A+ ++ +
Sbjct: 478 IQGMEDALGDMDFKVAGTAKG-ITAIQMDIKIHGLSREILLAALQQAQKGRMFILGKMAE 536
Query: 237 VI---SNEV 242
I + +
Sbjct: 537 CIDKPAEHL 545
Score = 104 bits (258), Expect = 2e-20, Method: Composition-based stats.
Identities = 38/234 (16%), Positives = 85/234 (36%), Gaps = 27/234 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT----KHGWITAEYGML 66
R + + ++K A G+ LV++G+T +L T+T ++ + + G +
Sbjct: 12 RSLIVETGKMAKQASGAVLVRYGETVVLVTSTASKEAREGMDFFPLTVDYEEKMYAVGKM 71
Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
P R GR G + R+I R +R + D ++ + D
Sbjct: 72 PGGFLRR------EGRPGNSAILNARLIDRPIRPLFDKRCRNDIHVMATVLSVDYDNAPE 125
Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
+ G ++ G +A + G + G +++ +
Sbjct: 126 LCGMLG-------------ASASLGISDIPWDGPIAGVRVGCVDGKFVINPTQEQLKVST 172
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
++ +++ I+ V+G A+ A ++ + + I +L+ QK +I
Sbjct: 173 LNITVAGSET-AILMVEGGAQEAP--EEDVLDAIMFGHETIKELVAFQKKIIEE 223
>gi|330807487|ref|YP_004351949.1| polyribonucleotide nucleotidyltransferase [Pseudomonas
brassicacearum subsp. brassicacearum NFM421]
gi|327375595|gb|AEA66945.1| Putative polyribonucleotide nucleotidyltransferase [Pseudomonas
brassicacearum subsp. brassicacearum NFM421]
Length = 701
Score = 152 bits (384), Expect = 4e-35, Method: Composition-based stats.
Identities = 44/243 (18%), Positives = 92/243 (37%), Gaps = 18/243 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +R +++ V GS L G+T L ATL + ++ + K
Sbjct: 316 RIDGRDTRTVRPLNIEVGVLPKTHGSALFTRGETQALVVATLGTARDAQLLDTLEGEKKD 375
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + R+ G + R++++++ + + I + +
Sbjct: 376 PFMLHYNFPPFSVGECGRMGGAGRREIGHGRL----ARRSVQAMLPAADVFPYTIRVVSE 431
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ GA +AL D M+ + V +G A+ +
Sbjct: 432 ITESNGSSSMASVCGASLALMDAGVPMKAPVAGIAMGLVKEGEKFAVLTD---------I 482
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T G + +Q + +++ L A + +++ +
Sbjct: 483 LGDEDHLGDMDFKVAGTAKG-VTALQMDIKIKGITEEIMEIALGQALEARLNILGQMNQI 541
Query: 238 ISN 240
I
Sbjct: 542 IGQ 544
Score = 99.5 bits (246), Expect = 3e-19, Method: Composition-based stats.
Identities = 35/234 (14%), Positives = 73/234 (31%), Gaps = 29/234 (12%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTH-LLTTATLEEKVPM----WIRNTKHGWITAEYGMLP 67
++L +++ A G+ LV D +L T ++ + + + T G +P
Sbjct: 15 VTLETGRIARQASGAVLVTVDDDVSVLVTVVGAKQADPGKGFFPLSVHYQEKTYAAGKIP 74
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R GR + R+I R +R + + Q++
Sbjct: 75 GGFFKR------EGRPSEKETLTSRLIDRPIRPLFPEGFMNEVQVVCTVVSTSKKTDPDI 128
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY-PIVDLDYGEDSTID 186
AA+ G A G + A +++ Y +
Sbjct: 129 AAMIGTSAA-------------LAISGIPFDGPIGAARVAFHESTGYLLNPTYEQLKASS 175
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
+D T ++ V+ A+ ++D + A D +I K++ +
Sbjct: 176 LDMVVAGTSE-AVLMVESEAKE--LTEDQMLGAVLFAHDEFQVVINAVKELAAE 226
>gi|228472909|ref|ZP_04057666.1| polyribonucleotide nucleotidyltransferase [Capnocytophaga
gingivalis ATCC 33624]
gi|228275491|gb|EEK14268.1| polyribonucleotide nucleotidyltransferase [Capnocytophaga
gingivalis ATCC 33624]
Length = 727
Score = 152 bits (384), Expect = 4e-35, Method: Composition-based stats.
Identities = 49/243 (20%), Positives = 82/243 (33%), Gaps = 20/243 (8%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
+RL GR Q+R I GS + G+T LTT TL E V
Sbjct: 317 LRLDGRNTKQIRPIWCEVGYLPSPHGSAIFTRGETQSLTTVTLGTSREANVIDIPSEQGE 376
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P STG S R+ G QR + R + + +
Sbjct: 377 ERFYLHYNFPPFSTGEARPLRGTSRREVGHGNLAQRALKRMIP------EDCPYTVRVVS 430
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
++++++G + A + +AL D M+ + + + G A+
Sbjct: 431 EILESNGSSSMATVCAGTLALMDAGIQMKKPVSGIAMGLITDGDKYAVLSD--------- 481
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T G I Q + + + L A++ ++ D
Sbjct: 482 ILGDEDHLGDMDFKVTGTKDG-ITACQMDIKIKGLTYEILEKALEQAREGRMHILGKITD 540
Query: 237 VIS 239
I+
Sbjct: 541 TIA 543
Score = 109 bits (272), Expect = 3e-22, Method: Composition-based stats.
Identities = 40/241 (16%), Positives = 77/241 (31%), Gaps = 28/241 (11%)
Query: 7 QENQMREISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITA 61
R IS+ ++K A+GS +V+ G+ LL T E V + A
Sbjct: 11 TLADGRTISIETGKLAKQADGSVVVQMGNAMLLATVVANKEAGEGVDFLPLTVDYREKFA 70
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
G P R R + R++ R LR + Q++I
Sbjct: 71 AAGRFPGGFFKR------EARPSDQEILTMRLVDRVLRPLFPKEYYCEVQVMIQLMSHDE 124
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
+ L + + G ++ + G + G I++ +
Sbjct: 125 NVMPD-------------ALAGLAASACLAVSDIPFDGPISEVRVGRINGEFIINPSAQQ 171
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
+ D+D + + V+ E S+ ++ A + I I+ Q + + +
Sbjct: 172 LAESDMDIMVGASKEF-VAMVE--GEMDEVSEKDMADAIHFAHEAIKVQIEAQ-ERLREK 227
Query: 242 V 242
V
Sbjct: 228 V 228
>gi|170782454|ref|YP_001710787.1| ribonuclease PH [Clavibacter michiganensis subsp. sepedonicus]
gi|169157023|emb|CAQ02196.1| ribonuclease PH [Clavibacter michiganensis subsp. sepedonicus]
Length = 245
Score = 152 bits (384), Expect = 4e-35, Method: Composition-based stats.
Identities = 119/239 (49%), Positives = 156/239 (65%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R GR +Q+REI++ R S+ AEGS L+ FG T +L TA+ +VP W + GW+TA
Sbjct: 7 RHDGRTADQLREITIERDWSEQAEGSALISFGRTRVLCTASFTNRVPRWKAGSGQGWVTA 66
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
EY MLPR+T R+ REAV G+ GGR+ EI R+IGR+LR+VVD+ ALG ++IDCDV+QA
Sbjct: 67 EYAMLPRATNERMDREAVKGKVGGRTHEISRLIGRSLRAVVDMKALGENTVVIDCDVLQA 126
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
DGGTRTAAITGA+VAL D L+ + Q + LK VAA+S G++ G P++DL Y E
Sbjct: 127 DGGTRTAAITGAYVALADALEWGRERKFIAQRATPLKDSVAAVSVGIVDGKPLLDLAYVE 186
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
D + D N VMT SG VEVQG+AE A F + A+L+LA L LQ +
Sbjct: 187 DVRAETDMNVVMTGSGSFVEVQGTAEGAPFDRAELDALLDLALGGGTTLTALQAQALGR 245
>gi|312963078|ref|ZP_07777563.1| Polyribonucleotide nucleotidyltransferase [Pseudomonas fluorescens
WH6]
gi|311282589|gb|EFQ61185.1| Polyribonucleotide nucleotidyltransferase [Pseudomonas fluorescens
WH6]
Length = 701
Score = 152 bits (384), Expect = 4e-35, Method: Composition-based stats.
Identities = 45/243 (18%), Positives = 92/243 (37%), Gaps = 18/243 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +R +++ V GS L G+T L ATL + ++ + K
Sbjct: 316 RIDGRDTRTVRPLNIEVGVLPKTHGSALFTRGETQALVVATLGTARDAQLLDTLEGEKKD 375
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + R+ G + R++++++ + + I + +
Sbjct: 376 PFMLHYNFPPFSVGECGRMGGAGRREIGHGRL----ARRSVQAMLPAADVFPYTIRVVSE 431
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ GA +AL D M+ + V +G AI +
Sbjct: 432 ITESNGSSSMASVCGASLALMDAGVPMKAPVAGIAMGLVKEGEKFAILTD---------I 482
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T G + +Q + +++ L A + +++ +
Sbjct: 483 LGDEDHLGDMDFKVAGTAKG-VTALQMDIKIKGITEEIMEIALGQALEARLNILGQMNQI 541
Query: 238 ISN 240
I
Sbjct: 542 IGQ 544
Score = 74.5 bits (181), Expect = 1e-11, Method: Composition-based stats.
Identities = 28/200 (14%), Positives = 58/200 (29%), Gaps = 23/200 (11%)
Query: 42 TLEEKVPMWIRNTKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSV 101
T + + + + T G +P R GR + R+I R +R +
Sbjct: 49 TADPSKGFFPLSVHYQEKTYAAGKIPGGFFKR------EGRPSEKETLTSRLIDRPIRPL 102
Query: 102 VDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHV 161
+ Q++ AA+ G A G +
Sbjct: 103 FPEGFMNEVQVVCTVVSTSKKTDPDIAAMIGTSAA-------------LAISGIPFDGPI 149
Query: 162 AAISCGMLCGY-PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAML 220
A +++ Y + +D T ++ V+ A+ ++D +
Sbjct: 150 GAARVAFHESTGYLLNPTYEQLKASSLDMVVAGTSE-AVLMVESEAKE--LTEDQMLGAV 206
Query: 221 NLAKDRIADLIKLQKDVISN 240
A D +I K++ +
Sbjct: 207 LFAHDEFQSVINAVKELAAE 226
>gi|317052392|ref|YP_004113508.1| polyribonucleotide nucleotidyltransferase [Desulfurispirillum
indicum S5]
gi|316947476|gb|ADU66952.1| polyribonucleotide nucleotidyltransferase [Desulfurispirillum
indicum S5]
Length = 722
Score = 152 bits (384), Expect = 4e-35, Method: Composition-based stats.
Identities = 45/244 (18%), Positives = 87/244 (35%), Gaps = 18/244 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR N++R IS+ GS L G+T + TL +E+ + +
Sbjct: 316 RVDGRSLNEVRPISIAPSFLPRTHGSVLFTRGETQAIVVTTLGTVSDEQFVENLEGERRS 375
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P G + R+ G RA+ +V+ I I +
Sbjct: 376 NYMFHYNFPPYCVGEAGFLRSPGRREIGHGAL----AKRAIEAVLPQGEDFPYTIRIVSE 431
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ GA +AL D ++ + + +L+G A+ +
Sbjct: 432 ITESNGSSSMASVCGASLALMDAGVPIKGAVSGIAMGLILEGDRFAVLTD---------I 482
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T G I +Q + + + A + A ++ +
Sbjct: 483 LGIEDHLGDMDFKVAGTSRG-ITSLQMDIKVEGITLEIMKAAIEQANGGRMHILDRMNEA 541
Query: 238 ISNE 241
+
Sbjct: 542 LDTH 545
Score = 86.4 bits (212), Expect = 3e-15, Method: Composition-based stats.
Identities = 40/228 (17%), Positives = 74/228 (32%), Gaps = 27/228 (11%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGMLPR 68
I + V++ A + +V+ GD +L TA +E + + + G +P
Sbjct: 13 IEMQTGQVARQASAAVVVRQGDNVILVTAVSNNEPKEGIDFFPLTVNYIEKRYSSGRIPG 72
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
R I R+I R LR + Q+I +
Sbjct: 73 GFKKREGM------PSDDETLISRLIDRPLRPLFPDGYFNETQVIATVMSSDGETPADVL 126
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+ GA ALH G + A G + G +++ Y + D+D
Sbjct: 127 AMYGAATALH-------------ISDVPFNGPLGACRIGRIDGQFVLNPTYAQIEQSDMD 173
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ T I+ ++ A+ S + + + L+ Q+
Sbjct: 174 ISLAATRD-AILMIEAGAKE--VSDQDILDAVAFGQREMGRLLDAQEQ 218
>gi|15605577|ref|NP_220363.1| polynucleotide phosphorylase/polyadenylase [Chlamydia trachomatis
D/UW-3/CX]
gi|81345334|sp|O84849|PNP_CHLTR RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|3329314|gb|AAC68439.1| Polyribonucleotide Nucleotidyltransferase [Chlamydia trachomatis
D/UW-3/CX]
gi|296436398|gb|ADH18572.1| polynucleotide phosphorylase/polyadenylase [Chlamydia trachomatis
G/9768]
gi|296437329|gb|ADH19499.1| polynucleotide phosphorylase/polyadenylase [Chlamydia trachomatis
G/11222]
gi|296438257|gb|ADH20418.1| polynucleotide phosphorylase/polyadenylase [Chlamydia trachomatis
G/11074]
gi|297140758|gb|ADH97516.1| polynucleotide phosphorylase/polyadenylase [Chlamydia trachomatis
G/9301]
gi|297748970|gb|ADI51516.1| Polyribonucleotide nucleotidyltransferase [Chlamydia trachomatis
D-EC]
gi|297749850|gb|ADI52528.1| Polyribonucleotide nucleotidyltransferase [Chlamydia trachomatis
D-LC]
Length = 695
Score = 152 bits (384), Expect = 4e-35, Method: Composition-based stats.
Identities = 47/244 (19%), Positives = 89/244 (36%), Gaps = 18/244 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT--LEEKVPMWIRNTKHG- 57
+R+ GR ++R IS+ GSCL G+T + T E + G
Sbjct: 314 IRVDGRTTTEIRPISIETPFLPRTHGSCLFTRGETQSMAVCTLGGENMAQRFEDLNGDGA 373
Query: 58 -WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
+Y P S G + + R+ G + +AL V+ ++ I ++
Sbjct: 374 ARFYLQYFFPPFSVGEVGRIGSPGRREIGHGKL----AEKALSHVLPETSRFPYIIRLES 429
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
++ +++G + A++ G +AL D ++ + +L A I
Sbjct: 430 NITESNGSSSMASVCGGCLALMDAGVPIKAPVAGIAMGLILDRDQAIILSD--------- 480
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T G I Q + + L AK + ++ L
Sbjct: 481 ISGIEDHLGDMDFKVAGTAKG-ITAFQMDIKIEGITHKIMEQALAQAKQGRSHILNLMTQ 539
Query: 237 VISN 240
V+++
Sbjct: 540 VLAS 543
Score = 91.1 bits (224), Expect = 1e-16, Method: Composition-based stats.
Identities = 37/235 (15%), Positives = 73/235 (31%), Gaps = 29/235 (12%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLL---TTATLEEKVPMWIRNTKHGWITAEYGMLPRS 69
+ +++ A G+ LVK +T + A+L E V + + G
Sbjct: 16 LIFETGKIARQASGAVLVKMNETWVFSSACAASLSEAVDFLPFRVDYQEKFSSAGRTSGG 75
Query: 70 TGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAA 129
R GR R + R++ R+LR + Q++ A
Sbjct: 76 FLKR------EGRPSEREILVSRLMDRSLRPSFPNRLMQDIQVLSYVWSYDGKTLPDPLA 129
Query: 130 ITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDA 189
I GA A VA + G++ G +++ E S +D
Sbjct: 130 ICGASAA-------------LAISEVPQNCIVAGVRVGLVGGKWVINPTRDELSASKLDL 176
Query: 190 NFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK---DVISNE 241
T S ++ ++ +++ + + IA + + I +
Sbjct: 177 VMAGTAS-AVLMIE--GHCDFLTEEQVLEAIAFGQTYIAKICDAIEAWQKAIGKQ 228
>gi|160900616|ref|YP_001566198.1| polynucleotide phosphorylase/polyadenylase [Delftia acidovorans
SPH-1]
gi|226702646|sp|A9BNB8|PNP_DELAS RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|160366200|gb|ABX37813.1| Polyribonucleotide nucleotidyltransferase [Delftia acidovorans
SPH-1]
Length = 753
Score = 152 bits (383), Expect = 4e-35, Method: Composition-based stats.
Identities = 43/243 (17%), Positives = 89/243 (36%), Gaps = 18/243 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +R I + V GS L G+T L +TL + + +
Sbjct: 317 RIDGRDTRTVRPIEIRNSVLPRTHGSALFTRGETQALVVSTLGTERDAQRIDALAGEFED 376
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y M P +TG + + R+ G + RAL + + I + +
Sbjct: 377 RFLFHYNMPPFATGEVGRMGSTKRREIGHGRL----AKRALAACLPSKEEFPYTIRVVSE 432
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ G +++ D M+ + + + + A+ +
Sbjct: 433 ITESNGSSSMASVCGGCLSMMDAGVPMKAHVAGIAMGLIKEDNRFAVLTD---------I 483
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T SG I +Q + +++ L AK+ ++ ++
Sbjct: 484 LGDEDHLGDMDFKVAGTTSG-ITALQMDIKIQGITKEIMQVALAQAKEARMHILGKMQEA 542
Query: 238 ISN 240
+
Sbjct: 543 MGE 545
Score = 92.2 bits (227), Expect = 6e-17, Method: Composition-based stats.
Identities = 32/233 (13%), Positives = 74/233 (31%), Gaps = 31/233 (13%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT----KHGWITAEYGMLPR 68
+++ +++ A G+ LV DT +L T ++ + T G +P
Sbjct: 18 VTMETGEIARQASGAVLVNIDDTVVLATVVASKQAKSGQDFFPLTVDYIEKTYAAGKIPG 77
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
S R + R+I R +R + ++I + + A
Sbjct: 78 SFFKR------EAKPSELETLTSRLIDRPIRPLFPEGFYNDVHVVIHTVSLNPEVDADIA 131
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+ A G + A G + G +++ + +D
Sbjct: 132 ALIATSAA-------------LSVSGIPFNGPIGAARVGFINGEYVLNPGQTQRKDSQMD 178
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKD----RIADLIKLQKDV 237
T++ ++ V+ A++ +D + + I + +L ++
Sbjct: 179 LVVAGTEA-AVLMVESEAQQ--LPEDVMLGAVVFGHEQGRIAIDAIHELVREA 228
>gi|293400548|ref|ZP_06644693.1| polyribonucleotide nucleotidyltransferase [Erysipelotrichaceae
bacterium 5_2_54FAA]
gi|291305574|gb|EFE46818.1| polyribonucleotide nucleotidyltransferase [Erysipelotrichaceae
bacterium 5_2_54FAA]
Length = 738
Score = 152 bits (383), Expect = 4e-35, Method: Composition-based stats.
Identities = 45/242 (18%), Positives = 90/242 (37%), Gaps = 16/242 (6%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
+R GR+ +++R + + GS L G+T +L+ TL + ++ + + ++
Sbjct: 322 VRPDGRKIDEIRPLDSQVDILPRVHGSALFTRGETQVLSVTTLGPMNDNQIIDDVTDVEY 381
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P S G + R+ G RAL V+ I
Sbjct: 382 KRFMHHYNFPPYSVGETGRMGNPGRREIGHGALG----ERALSQVLPSEEEFPYTIRTVA 437
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V++++G + A+I ++L ++ + ++ + D
Sbjct: 438 EVLESNGSSSQASICAGTMSLMAAGVPIKAPVAGIAMGLIMDEDSG-------KYTVLTD 490
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T G I +Q + A ++D F L+ AK A +++
Sbjct: 491 IQGMEDHFGDMDFKVAGTSEG-ITALQMDIKVAGITEDVFREALSQAKGARAQILENMMT 549
Query: 237 VI 238
I
Sbjct: 550 AI 551
Score = 105 bits (261), Expect = 6e-21, Method: Composition-based stats.
Identities = 43/231 (18%), Positives = 81/231 (35%), Gaps = 27/231 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----HGWITAEYGML 66
R +++ V+K A GS LV++ DT +L+TAT ++ I G +
Sbjct: 16 RVLTVETGEVAKQAGGSALVRYNDTVVLSTATASKQAKEGIDFFPLTVSFEEKLYSVGKI 75
Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
P R GR + RMI R +R + Q++ + +
Sbjct: 76 PGGFLRR------EGRPSEHATLTARMIDRPIRPLFAEGFRNEVQVVNTVLSVDQECTPE 129
Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
A+ GA +AL G +A + G + G +++ + D
Sbjct: 130 MTAMFGASLALC-------------VSDIPFNGPIAGVIVGRVDGEYVINPTPEQLEKSD 176
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
+ T + V+ A+ +D + + I L+ Q+++
Sbjct: 177 IHLTVAGTKY-AVNMVEAGAKE--VDEDAMLGAIMFGHEHIKKLVAFQEEI 224
>gi|158320566|ref|YP_001513073.1| polynucleotide phosphorylase/polyadenylase [Alkaliphilus oremlandii
OhILAs]
gi|187470976|sp|A8MFB4|PNP_ALKOO RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|158140765|gb|ABW19077.1| Polyribonucleotide nucleotidyltransferase [Alkaliphilus oremlandii
OhILAs]
Length = 706
Score = 152 bits (383), Expect = 4e-35, Method: Composition-based stats.
Identities = 47/243 (19%), Positives = 87/243 (35%), Gaps = 18/243 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHG 57
R RQ +++R IS + GS L G T +L+ T + ++ + +
Sbjct: 314 RPDDRQHDEIRPISCEVDLLPKTHGSGLFTRGQTQVLSIVTLGAIGDVQILDGLGKEESK 373
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + R+ G RAL ++ I + +
Sbjct: 374 RYMHHYNFPPYSVGETKMLRSPGRREIGHGAL----AERALEPMIPSQDDFPYAIRVVSE 429
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
V+ ++G + A++ G+ ++L D ++D + V +G AI +
Sbjct: 430 VLASNGSSSQASVCGSTLSLLDAGVPLKDMVAGIAMGLVKEGDAVAILSD---------I 480
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T G I +Q + + L A+ ++ K+
Sbjct: 481 QGMEDHLGDMDFKVAGTAKG-ITAIQMDIKIKGIDEPILKDALEQARVGRLYILDKMKEA 539
Query: 238 ISN 240
IS+
Sbjct: 540 ISS 542
Score = 104 bits (259), Expect = 1e-20, Method: Composition-based stats.
Identities = 41/236 (17%), Positives = 82/236 (34%), Gaps = 28/236 (11%)
Query: 12 REISLTRRVSKY-AEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKHGWITAEYGML 66
R + + + GSCL+K+G T +L A E + + + + G +
Sbjct: 12 RVLEVEVGKLAQLSNGSCLLKYGQTAVLVNACASKSPREGIDFFPLSVDYEEKMYAAGKI 71
Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
P R GR + R+I R +R + QII + D
Sbjct: 72 PGGFIKR------EGRPSENAILTSRLIDRPIRPLFPDGYRNDVQIIATVLSVDIDCTPD 125
Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
A+ G+ +A +G A++ G++ G +++ E
Sbjct: 126 IVAMLGSSIA-------------LSISDIPFQGPTASVHVGLVDGKLLINPTSDEREHSS 172
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNEV 242
+D T ++ ++ A ++ + A + I ++I ++ I+ EV
Sbjct: 173 LDLVVSGTKD-AVMMIEAGANE--VTEAQMLEAILFAHEEIKNIISFIEE-IAAEV 224
>gi|209694194|ref|YP_002262122.1| polynucleotide phosphorylase/polyadenylase [Aliivibrio salmonicida
LFI1238]
gi|208008145|emb|CAQ78287.1| polyribonucleotide nucleotidyltransferase [Aliivibrio salmonicida
LFI1238]
Length = 718
Score = 152 bits (383), Expect = 4e-35, Method: Composition-based stats.
Identities = 44/242 (18%), Positives = 92/242 (38%), Gaps = 18/242 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR+++ +R + + V GS L G+T L TATL + ++ + K
Sbjct: 325 RIDGREKDMVRALDVRTGVLPRTHGSALFTRGETQALVTATLGTQRDAQIIDSLMGEKKD 384
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P G + R+ G + R + +V+ + + +
Sbjct: 385 HFLLHYNFPPYCVGETGFVGSPKRREIGHGKL----AKRGIAAVMPSVEEFPYTVRVVSE 440
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ G +AL D ++ + V +G + +
Sbjct: 441 ITESNGSSSMASVCGTSLALMDAGVPIKASVAGIAMGLVKEGDDFVVLSD---------I 491
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T++G I +Q + +++ LN A+ ++ + +
Sbjct: 492 LGDEDHLGDMDFKVAGTNAG-ITALQMDIKIEGITKEIMQIALNQAQGARKHILTVMDEA 550
Query: 238 IS 239
IS
Sbjct: 551 IS 552
Score = 86.4 bits (212), Expect = 3e-15, Method: Composition-based stats.
Identities = 34/228 (14%), Positives = 74/228 (32%), Gaps = 27/228 (11%)
Query: 14 ISLTRRV-SKYAEGSCLVKFGDTHLLTTATLEEKV----PMWIRNTKHGWITAEYGMLPR 68
++L V ++ A + + DT + + +++ + + T G +P
Sbjct: 26 VTLETGVMARQATAAVMASMDDTSVFVSVVAKKEAVAGQDFFPLTVNYQERTYAAGKIPG 85
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
R GR R+I R +R + + Q+I I D
Sbjct: 86 GFFKR------EGRPSEGETLTARLIDRPIRPLFPSAFKNEVQVIATVVSINPDVNPDMI 139
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
+ AL G + A G + G +++ E + +D
Sbjct: 140 TMIATSAALSIAGV-------------PFNGPIGAARVGHINGELVLNPSNTELANSKLD 186
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
T++ ++ V+ +E S++ + + D+ +IK +
Sbjct: 187 LVVSGTEA-AVLMVE--SEADNLSEEEMLSAVVFGHDQQQVVIKAINE 231
>gi|229821215|ref|YP_002882741.1| ribonuclease PH [Beutenbergia cavernae DSM 12333]
gi|229567128|gb|ACQ80979.1| ribonuclease PH [Beutenbergia cavernae DSM 12333]
Length = 279
Score = 152 bits (383), Expect = 4e-35, Method: Composition-based stats.
Identities = 105/215 (48%), Positives = 144/215 (66%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+R GR + +R I +TR AEGS LV+FG+T +L A+ VP W + + GW+T
Sbjct: 14 VRADGRAPDDLRPIRITRGWLDAAEGSVLVEFGNTRVLCAASFTAGVPRWRKGSGEGWVT 73
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEY MLPR+T R RE+V GR GGR+ EI R+IGR+LR+V+D++ALG I++DCDV+Q
Sbjct: 74 AEYAMLPRATNTRNDRESVRGRIGGRTHEISRLIGRSLRAVIDVAALGENTIVVDCDVLQ 133
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTAAITGA+VAL D + + + + VL+ V+A+S G++ G P++DL Y
Sbjct: 134 ADGGTRTAAITGAYVALADAVAWGLEHGEVRRGAHVLRDSVSAVSVGIVDGAPLLDLPYA 193
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDH 215
ED + D N V+T SG VEVQG+AE A F +
Sbjct: 194 EDVRAETDMNVVVTGSGSFVEVQGTAEGAPFDRAE 228
>gi|70734341|ref|YP_257981.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas fluorescens
Pf-5]
gi|123762225|sp|Q4KIF2|PNP_PSEF5 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|68348640|gb|AAY96246.1| polyribonucleotide nucleotidyltransferase [Pseudomonas fluorescens
Pf-5]
Length = 703
Score = 152 bits (383), Expect = 4e-35, Method: Composition-based stats.
Identities = 44/243 (18%), Positives = 92/243 (37%), Gaps = 18/243 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +R +++ V GS L G+T L ATL + ++ + K
Sbjct: 318 RIDGRDTRTVRPLNIEVGVLPKTHGSALFTRGETQALVVATLGTARDAQLLDTLEGEKKD 377
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + R+ G + R++++++ + + I + +
Sbjct: 378 PFMLHYNFPPFSVGECGRMGGAGRREIGHGRL----ARRSVQAMLPAADVFPYTIRVVSE 433
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ GA +AL D M+ + V +G A+ +
Sbjct: 434 ITESNGSSSMASVCGASLALMDAGVPMKAPVAGIAMGLVKEGEKFAVLTD---------I 484
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T G + +Q + +++ L A + +++ +
Sbjct: 485 LGDEDHLGDMDFKVAGTAKG-VTALQMDIKIKGITEEIMEIALGQALEARLNILGQMNQI 543
Query: 238 ISN 240
I
Sbjct: 544 IGQ 546
Score = 100 bits (248), Expect = 2e-19, Method: Composition-based stats.
Identities = 36/234 (15%), Positives = 76/234 (32%), Gaps = 29/234 (12%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTH-LLTTATLEEKVPM----WIRNTKHGWITAEYGMLP 67
++L +++ A G+ LV D +L T ++ + + + T G +P
Sbjct: 15 VTLETGRIARQASGAVLVTVDDDVSVLVTVVGAKQADPGKGFFPLSVHYQEKTYAAGKIP 74
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R GR + R+I R +R + + Q++
Sbjct: 75 GGFFKR------EGRPSEKETLTSRLIDRPIRPLFPEGFMNEVQVVCTVVSTSKKTDPDI 128
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY-PIVDLDYGEDSTID 186
AA+ G A G + A +++ Y + +
Sbjct: 129 AAMIGTSAA-------------LAISGIPFDGPIGAARVAFHESTGYLLNPTYEQLAASS 175
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
+D T+ ++ V+ A+ ++D + A D +IK K++ +
Sbjct: 176 LDMVVAGTEE-AVLMVESEAKE--LTEDQMLGAVLFAHDEFQSVIKAVKELAAE 226
>gi|51245125|ref|YP_065009.1| ribonuclease PH [Desulfotalea psychrophila LSv54]
gi|61215901|sp|Q6ANS2|RNPH_DESPS RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|50876162|emb|CAG36002.1| probable ribonuclease PH [Desulfotalea psychrophila LSv54]
Length = 236
Score = 152 bits (383), Expect = 4e-35, Method: Composition-based stats.
Identities = 107/236 (45%), Positives = 149/236 (63%), Gaps = 4/236 (1%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR + R +R IS+ R V +A+ S L++ G+TH++ ++EE VP ++R + GWIT
Sbjct: 3 MRQNNRTAESLRPISIERGVQLHADASVLIRMGNTHVICGVSVEESVPPFMRGSGKGWIT 62
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLP +T +R +RE GR+ EIQR+IGR+LR +VDL +G R + +DCDV+
Sbjct: 63 AEYGMLPCATDSRYRRETNGR--SGRTMEIQRLIGRSLRMMVDLETIGERTLRVDCDVLN 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+ITG +AL D + ++ V AIS GM G ++DLDY
Sbjct: 121 ADGGTRTASITGGALALRDAFTKLHTTGLLEKM--PEIMPVVAISVGMKDGQALLDLDYV 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
EDS+ D DANFVM G +EVQ +AE FS D F AM +LA+ A+L++L +D
Sbjct: 179 EDSSADADANFVMAGDGRWIEVQSTAEGRPFSHDQFLAMADLAQKGSAELLQLWRD 234
>gi|194335788|ref|YP_002017582.1| Polyribonucleotide nucleotidyltransferase [Pelodictyon
phaeoclathratiforme BU-1]
gi|226702672|sp|B4SDX4|PNP_PELPB RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|194308265|gb|ACF42965.1| Polyribonucleotide nucleotidyltransferase [Pelodictyon
phaeoclathratiforme BU-1]
Length = 728
Score = 152 bits (383), Expect = 4e-35, Method: Composition-based stats.
Identities = 47/241 (19%), Positives = 87/241 (36%), Gaps = 18/241 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
RL GR +Q+R IS+ + A GS L G+T L T TL + + + ++
Sbjct: 332 RLDGRALDQVRPISIELGIIPRAHGSALFTRGETQALVTITLGTKKDAQSVDNLTSSADK 391
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P G + ++ R+ G R+++ V I I D
Sbjct: 392 KFYLHYNFPPFCVGETGRLGSIGRREIGHGNL----AERSIKMVAPTEEEFPYTIRIVSD 447
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+++++G + A++ G +AL D ++ + + + +G A+ +
Sbjct: 448 ILESNGSSSMASVCGGTLALMDGGVPIKKPVSGIAMGLIKEGASYAVLSD---------I 498
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T G I Q + L A+ ++ +
Sbjct: 499 LGNEDHLGDMDFKVSGTRDG-ITACQMDIKIDGLDYHILETALEQARRGRLHILGEMEKA 557
Query: 238 I 238
I
Sbjct: 558 I 558
Score = 111 bits (278), Expect = 6e-23, Method: Composition-based stats.
Identities = 44/229 (19%), Positives = 79/229 (34%), Gaps = 20/229 (8%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGN 72
IS+ ++K A+G+ +V+ GDT ++ T +K P N + + EY + G
Sbjct: 15 ISIETGKMAKQADGAVVVRQGDTMVIATVVSSKKTPPP--NQDYFPLQVEYREKYSAAGK 72
Query: 73 RVKREAVSG-RQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAIT 131
R + R+I RALR + L QII+
Sbjct: 73 FPGGFFKRESRPSEKEILSARLIDRALRPLFPDGYLYETQIIVTVISSDQINDADVLGGL 132
Query: 132 GAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANF 191
A A+ + ++ + G + G +V+ D E D+D
Sbjct: 133 AASCAIM-------------VSDIPFQNPMSEVRVGRINGLFVVNPDINELVNSDLDICI 179
Query: 192 VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
T++ I ++ E S+ + I L LQ ++ +
Sbjct: 180 GGTEN-TICMLE--GEMKEISEAEMLDAIKFGHAAIRKLCALQSEIAAE 225
>gi|92115185|ref|YP_575113.1| polynucleotide phosphorylase/polyadenylase [Chromohalobacter
salexigens DSM 3043]
gi|122990389|sp|Q1QSZ4|PNP_CHRSD RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|91798275|gb|ABE60414.1| Polyribonucleotide nucleotidyltransferase [Chromohalobacter
salexigens DSM 3043]
Length = 707
Score = 152 bits (383), Expect = 4e-35, Method: Composition-based stats.
Identities = 38/243 (15%), Positives = 87/243 (35%), Gaps = 18/243 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +R +S+ GS + G+T + ATL + ++ + +
Sbjct: 316 RIDGRDHRTVRPLSIEVGTLPKTHGSAVFTRGETQAVVVATLGTLRDAQLIESLEGERKD 375
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G R+ G + R +++++ I + +
Sbjct: 376 RFLLHYNFPPYSVGEAGFMGGPKRREIGHGRL----ARRGVQAMLPSEEDFPYTIRVVSE 431
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ G+ +AL D ++ + V A+ +
Sbjct: 432 ITESNGSSSMASVCGSSLALMDAGVPLKAPVAGIAMGLVKDEDGFAVLTD---------I 482
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D + +G + +Q + +++ L A + +++ V
Sbjct: 483 LGDEDHLGDMDFKVAGSTAG-VTALQMDIKIEGINEEIMETALQQAHEARLHILEQMNTV 541
Query: 238 ISN 240
I+
Sbjct: 542 IAQ 544
Score = 103 bits (256), Expect = 2e-20, Method: Composition-based stats.
Identities = 35/234 (14%), Positives = 76/234 (32%), Gaps = 29/234 (12%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKV----PMWIRNTKHGWITAEYGMLPR 68
++L +++ A G+ +V DT +L T ++ V P + + + T G +P
Sbjct: 15 VTLETGRIARQATGAVMVTMDDTVVLCTVVAKKDVNPAQPFFPLSVHYQEKTYAVGKIPG 74
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
R GR + R+I R +R + + Q++ + A
Sbjct: 75 GFFKR------EGRPTEKETLTSRLIDRPIRPLFPNGFMNEVQVVCTVLSTDRNHDPDIA 128
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY-PIVDLDYGEDSTIDV 187
A+ G A G + A G ++ E + ++
Sbjct: 129 AMLGTSAA-------------LAISGVPFNGPIGAARVGFNEDKGYFLNPTVEELESSEL 175
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
+ T+ ++ V+ A+ +D + + I +++E
Sbjct: 176 NMVVAGTEK-AVLMVESEAKE--LLEDEMLGAVLFGHQEMQAAITAI-QALADE 225
>gi|71276358|ref|ZP_00652635.1| Polyribonucleotide nucleotidyltransferase [Xylella fastidiosa
Dixon]
gi|71162820|gb|EAO12545.1| Polyribonucleotide nucleotidyltransferase [Xylella fastidiosa
Dixon]
Length = 700
Score = 152 bits (383), Expect = 4e-35, Method: Composition-based stats.
Identities = 41/243 (16%), Positives = 85/243 (34%), Gaps = 18/243 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
+R+ GR +R I++ V GS L G+T + TL + +V +
Sbjct: 315 VRIDGRSLEAVRPITVKVGVLPRVHGSGLFTRGETQAIVVTTLGTARDGQVIDAVTGEYK 374
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P S G + R+ G + R + +V+ I +
Sbjct: 375 ENFLFHYNFPPYSVGECGRFGVQKRREIGHGRL----ARRGVLAVMPSLDEFPYTIRVVS 430
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
++ +++G + A++ G+ +AL D ++ + V +G +
Sbjct: 431 EITESNGSSSMASVCGSSLALMDAGVPVKAPVAGIAMGLVKEGERFVVLSD--------- 481
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T G + +Q + +++ L AK ++
Sbjct: 482 ILGDEDHLGDMDFKVAGTSEG-VSALQMDIKIEGITEEIMRQALQQAKVGRLHILGEMDK 540
Query: 237 VIS 239
++
Sbjct: 541 ALA 543
Score = 93.8 bits (231), Expect = 2e-17, Method: Composition-based stats.
Identities = 45/232 (19%), Positives = 80/232 (34%), Gaps = 27/232 (11%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTKHGWITAEYGMLPR 68
++L V++ A G+ +VK DT LL T T E + + G +P
Sbjct: 15 VTLETGEVARQASGAVIVKMDDTVLLVTVVAAKTAREGQDFFPLTVDYQEKFYAGGRIPG 74
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
S R GR + I R+I R +R + QII + +
Sbjct: 75 SFFKR------EGRATEKETLISRLIDRPIRPLFPEDYKNEVQIIAMVMSLDPEIDGDIP 128
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+ GA AL KG + A G G I++ E ++
Sbjct: 129 AMIGASAALSLAGI-------------PFKGPIGAAKVGYNDGQYILNPTVSELKKSQLE 175
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
T + ++ V+ +E A S++ + + +I++ + +
Sbjct: 176 LVVAGTAN-AVLMVE--SEAALLSEEVMLGAVIFGHREMQKVIQVIDSLTAE 224
>gi|166154186|ref|YP_001654304.1| polynucleotide phosphorylase/polyadenylase [Chlamydia trachomatis
434/Bu]
gi|166155061|ref|YP_001653316.1| polynucleotide phosphorylase/polyadenylase [Chlamydia trachomatis
L2b/UCH-1/proctitis]
gi|301335431|ref|ZP_07223675.1| polynucleotide phosphorylase/polyadenylase [Chlamydia trachomatis
L2tet1]
gi|226702634|sp|B0B971|PNP_CHLT2 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|226702636|sp|B0BAV0|PNP_CHLTB RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|165930174|emb|CAP03658.1| polyribonucleotide nucleotidyltransferase [Chlamydia trachomatis
434/Bu]
gi|165931049|emb|CAP06612.1| polyribonucleotide nucleotidyltransferase [Chlamydia trachomatis
L2b/UCH-1/proctitis]
Length = 695
Score = 152 bits (383), Expect = 4e-35, Method: Composition-based stats.
Identities = 47/244 (19%), Positives = 90/244 (36%), Gaps = 18/244 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT--LEEKVPMWIRNTKHG- 57
+R+ GR ++R IS+ + GSCL G+T + T E + G
Sbjct: 314 IRVDGRTTTEIRPISIETPLLPRTHGSCLFTRGETQSMAVCTLGGENMAQRFEDLNGDGA 373
Query: 58 -WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
+Y P S G + + R+ G + +AL V+ ++ I ++
Sbjct: 374 ARFYLQYFFPPFSVGEVGRIGSPGRREIGHGKL----AEKALSHVLPETSRFPYIIRLES 429
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
++ +++G + A++ G +AL D ++ + +L A I
Sbjct: 430 NITESNGSSSMASVCGGCLALMDAGVPIKAPVAGIAMGLILDRDQAIILSD--------- 480
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T G I Q + + L AK + ++ L
Sbjct: 481 ISGIEDHLGDMDFKVAGTAKG-ITAFQMDIKIEGITHKIMEQALAQAKQGRSHILNLMTQ 539
Query: 237 VISN 240
V+++
Sbjct: 540 VLAS 543
Score = 90.3 bits (222), Expect = 2e-16, Method: Composition-based stats.
Identities = 37/235 (15%), Positives = 73/235 (31%), Gaps = 29/235 (12%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLL---TTATLEEKVPMWIRNTKHGWITAEYGMLPRS 69
+ +++ A G+ LVK +T + A+L E V + + G
Sbjct: 16 LIFETGKIARQASGAVLVKMNETWVFSSACAASLSEAVGFLPFRVDYQEKFSSAGRTSGG 75
Query: 70 TGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAA 129
R GR R + R+I R+LR + Q++ A
Sbjct: 76 FLKR------EGRPSEREILVSRLIDRSLRPSFPNRLMQDIQVLSYVWSYDGKTLPDPLA 129
Query: 130 ITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDA 189
I GA A +A + G++ G +++ E S +D
Sbjct: 130 ICGASAA-------------LAISEVPQNCIIAGVRVGLVGGKWVINPTRDELSASKLDL 176
Query: 190 NFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK---DVISNE 241
T S ++ ++ +++ + + IA + + I +
Sbjct: 177 VMAGTAS-AVLMIE--GHCDFLTEEQVLEAIAFGQTYIAKICDAIEAWQKAIGKQ 228
>gi|255317984|ref|ZP_05359230.1| polynucleotide phosphorylase/polyadenylase [Chlamydia trachomatis
6276s]
Length = 695
Score = 152 bits (383), Expect = 4e-35, Method: Composition-based stats.
Identities = 47/244 (19%), Positives = 89/244 (36%), Gaps = 18/244 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT--LEEKVPMWIRNTKHG- 57
+R+ GR ++R IS+ GSCL G+T + T E + G
Sbjct: 314 IRVDGRTTTEIRPISIETPFLPRTHGSCLFTRGETQSMAVCTLGGENMAQRFEDLNGDGA 373
Query: 58 -WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
+Y P S G + + R+ G + +AL V+ ++ I ++
Sbjct: 374 ARFYLQYFFPPFSVGEVGRIGSPGRREIGHGKL----AEKALSHVLPETSRFPYIIRLES 429
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
++ +++G + A++ G +AL D ++ + +L A I
Sbjct: 430 NITESNGSSSMASVCGGCLALMDAGVPIKAPVAGIAMGLILDRDQAIILSD--------- 480
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T G I Q + + L AK + ++ L
Sbjct: 481 ISGIEDHLGDMDFKVAGTAKG-ITAFQMDIKIEGITHKIMEQALAQAKQGRSHILNLMTQ 539
Query: 237 VISN 240
V+++
Sbjct: 540 VLAS 543
Score = 90.7 bits (223), Expect = 1e-16, Method: Composition-based stats.
Identities = 37/235 (15%), Positives = 73/235 (31%), Gaps = 29/235 (12%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLL---TTATLEEKVPMWIRNTKHGWITAEYGMLPRS 69
+ +++ A G+ LVK +T + A+L E V + + G
Sbjct: 16 LIFETGKIARQASGAVLVKMNETWVFSSACAASLSEAVDFLPFRVDYQEKFSSAGRTSGG 75
Query: 70 TGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAA 129
R GR R + R++ R+LR + Q++ A
Sbjct: 76 FLKR------EGRPSEREILVSRLMDRSLRPSFPNRLMQDIQVLSYVWSYDGKTLPDPLA 129
Query: 130 ITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDA 189
I GA A VA + G++ G +++ E S +D
Sbjct: 130 ICGASAA-------------LAISEVPQNCIVAGVRVGLVGGKWVINPTRDELSASKLDL 176
Query: 190 NFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK---DVISNE 241
T S ++ ++ +++ + + IA + + I +
Sbjct: 177 VMAGTAS-AVLMIE--GHCDFLTEEQVLEAIAFGQTYIAKICDAIEAWQKAIGKQ 228
>gi|170729437|ref|YP_001774870.1| polynucleotide phosphorylase/polyadenylase [Xylella fastidiosa M12]
gi|226704835|sp|B0U1R2|PNP_XYLFM RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|167964230|gb|ACA11240.1| Polyribonucleotide nucleotidyltransferase [Xylella fastidiosa M12]
Length = 700
Score = 152 bits (383), Expect = 4e-35, Method: Composition-based stats.
Identities = 41/243 (16%), Positives = 85/243 (34%), Gaps = 18/243 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
+R+ GR +R I++ V GS L G+T + TL + +V +
Sbjct: 315 VRIDGRSLEAVRPITVKVGVLPRVHGSGLFTRGETQAIVVTTLGTARDGQVIDAVTGEYK 374
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P S G + R+ G + R + +V+ I +
Sbjct: 375 ENFLFHYNFPPYSVGECGRFGVQKRREIGHGRL----ARRGVLAVMPSLDEFPYTIRVVS 430
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
++ +++G + A++ G+ +AL D ++ + V +G +
Sbjct: 431 EITESNGSSSMASVCGSSLALMDAGVPVKAPVAGIAMGLVKEGERFVVLSD--------- 481
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T G + +Q + +++ L AK ++
Sbjct: 482 ILGDEDHLGDMDFKVAGTSEG-VSALQMDIKIEGITEEIMRQALQQAKVGRLHILGEMDK 540
Query: 237 VIS 239
++
Sbjct: 541 ALA 543
Score = 93.4 bits (230), Expect = 2e-17, Method: Composition-based stats.
Identities = 45/232 (19%), Positives = 80/232 (34%), Gaps = 27/232 (11%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTKHGWITAEYGMLPR 68
++L V++ A G+ +VK DT LL T T E + + G +P
Sbjct: 15 VTLETGEVARQASGAVIVKMDDTVLLVTVVAAKTAREGQDFFPLTVDYQEKFYAGGRIPG 74
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
S R GR + I R+I R +R + QII + +
Sbjct: 75 SFFKR------EGRATEKETLISRLIDRPIRPLFPEDYKNEVQIIAMVMSLDPEIDGDIP 128
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+ GA AL KG + A G G I++ E ++
Sbjct: 129 AMIGASAALSLAGI-------------PFKGPIGAAKVGYNDGQYILNPTVSELKKSQLE 175
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
T + ++ V+ +E A S++ + + +I++ + +
Sbjct: 176 LVVAGTAN-AVLMVE--SEAALLSEEVMLGAVIFGHREMQKVIQVIDSLTAE 224
>gi|255507465|ref|ZP_05383104.1| polynucleotide phosphorylase/polyadenylase [Chlamydia trachomatis
D(s)2923]
gi|289525888|emb|CBJ15370.1| polyribonucleotide nucleotidyltransferase [Chlamydia trachomatis
Sweden2]
gi|296435474|gb|ADH17652.1| polynucleotide phosphorylase/polyadenylase [Chlamydia trachomatis
E/150]
gi|296439191|gb|ADH21344.1| polynucleotide phosphorylase/polyadenylase [Chlamydia trachomatis
E/11023]
Length = 695
Score = 152 bits (383), Expect = 4e-35, Method: Composition-based stats.
Identities = 47/244 (19%), Positives = 89/244 (36%), Gaps = 18/244 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT--LEEKVPMWIRNTKHG- 57
+R+ GR ++R IS+ GSCL G+T + T E + G
Sbjct: 314 IRVDGRTTTEIRPISIETPFLPRTHGSCLFTRGETQSMAVCTLGGENMAQRFEDLNGDGA 373
Query: 58 -WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
+Y P S G + + R+ G + +AL V+ ++ I ++
Sbjct: 374 ARFYLQYFFPPFSVGEVGRIGSPGRREIGHGKL----AEKALSHVLPETSRFPYIIRLES 429
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
++ +++G + A++ G +AL D ++ + +L A I
Sbjct: 430 NITESNGSSSMASVCGGCLALMDAGVPIKAPVAGIAMGLILDRDQAIILSD--------- 480
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T G I Q + + L AK + ++ L
Sbjct: 481 ISGIEDHLGDMDFKVAGTAKG-ITAFQMDIKIEGITHKIMEQALAQAKQGRSHILNLMTQ 539
Query: 237 VISN 240
V+++
Sbjct: 540 VLAS 543
Score = 89.5 bits (220), Expect = 4e-16, Method: Composition-based stats.
Identities = 37/235 (15%), Positives = 73/235 (31%), Gaps = 29/235 (12%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLL---TTATLEEKVPMWIRNTKHGWITAEYGMLPRS 69
+ +++ A G+ LVK +T + A+L E V + + G
Sbjct: 16 LIFETGKIARQASGAVLVKMNETWVFSSACAASLSEAVDFLPFRVDYQEKFSSAGRTSGG 75
Query: 70 TGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAA 129
R GR R + R++ R+LR + Q++ A
Sbjct: 76 FLKR------EGRPSEREILVSRLMDRSLRPSFPNRLMQDIQVLSYVWSYDGKTLPDPLA 129
Query: 130 ITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDA 189
I GA A VA + G++ G +++ E S +D
Sbjct: 130 ICGASAA-------------LAISEVPQNCIVAGVRVGLVGGKWVINPTRDELSASRLDL 176
Query: 190 NFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK---DVISNE 241
T S ++ ++ +++ + + IA + + I +
Sbjct: 177 VMAGTAS-AVLMIE--GHCDFLTEEQVLEAIVFGQTYIAKICDAIEAWQKAIGKQ 228
>gi|77457010|ref|YP_346515.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas fluorescens
Pf0-1]
gi|123606003|sp|Q3KI80|PNP_PSEPF RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|77381013|gb|ABA72526.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas fluorescens
Pf0-1]
Length = 701
Score = 152 bits (383), Expect = 4e-35, Method: Composition-based stats.
Identities = 44/243 (18%), Positives = 91/243 (37%), Gaps = 18/243 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +R +++ V GS L G+T L ATL + ++ + K
Sbjct: 316 RIDGRDTRTVRPLNIEVGVLPKTHGSALFTRGETQALVVATLGTARDAQLLDTLEGEKKD 375
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + R+ G + R++ +++ + + I + +
Sbjct: 376 PFMLHYNFPPFSVGECGRMGGAGRREIGHGRL----ARRSVSAMLPAADVFPYTIRVVSE 431
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ GA +AL D M+ + V +G A+ +
Sbjct: 432 ITESNGSSSMASVCGASLALMDAGVPMKAPVAGIAMGLVKEGEKFAVLTD---------I 482
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T G + +Q + +++ L A + +++ +
Sbjct: 483 LGDEDHLGDMDFKVAGTAKG-VTALQMDIKIKGITEEIMEIALGQALEARLNILGQMNQI 541
Query: 238 ISN 240
I
Sbjct: 542 IGQ 544
Score = 99 bits (247), Expect = 3e-19, Method: Composition-based stats.
Identities = 35/234 (14%), Positives = 74/234 (31%), Gaps = 29/234 (12%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTH-LLTTATLEEKVPM----WIRNTKHGWITAEYGMLP 67
++L +++ A G+ LV D +L T ++ + + + T G +P
Sbjct: 15 VTLETGRIARQASGAVLVTVDDDVSVLVTVVGAKQADPGKGFFPLSVHYQEKTYAAGKIP 74
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R GR + R+I R +R + + Q++
Sbjct: 75 GGFFKR------EGRPSEKETLTSRLIDRPIRPLFPEGFMNEVQVVCTVVSTSKKTDPDI 128
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY-PIVDLDYGEDSTID 186
AA+ G A G + A +++ Y + +
Sbjct: 129 AAMIGTSAA-------------LAISGIPFDGPIGAARVAFHESTGYLLNPTYEQQAASS 175
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
+D T ++ V+ A+ ++D + A D +I K++ +
Sbjct: 176 LDMVVAGTSD-AVLMVESEAKE--LTEDQMLGAVLFAHDEFQVVINAVKELAAE 226
>gi|225849804|ref|YP_002730038.1| polynucleotide phosphorylase/polyadenylase [Persephonella marina
EX-H1]
gi|257096700|sp|C0QTM3|PNP_PERMH RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|225646061|gb|ACO04247.1| polyribonucleotide nucleotidyltransferase [Persephonella marina
EX-H1]
Length = 709
Score = 152 bits (383), Expect = 4e-35, Method: Composition-based stats.
Identities = 44/242 (18%), Positives = 82/242 (33%), Gaps = 19/242 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE-----EKVPMWIRNTK 55
+R+ GR+ +++R I + + GS + G T TL + +
Sbjct: 317 VRIDGRRPDEIRPIWIRTGLFPRIHGSAIFTRGQTQAFVATTLGAPGEEQIEESIEEGEE 376
Query: 56 HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115
Y P STG A S R+ G RA+ ++ I +
Sbjct: 377 KKRFMLHYNFPPFSTGEARPPRAPSRREIGHGNL----AERAIEPLIPDEEEFPYVIRVV 432
Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIV 175
++++++G T A + GA ++L D M+ + + + I
Sbjct: 433 SEILESNGSTSMATVCGASLSLFDAGVPMKKHVAGIAMGLLKEDDDYVILTD-------- 484
Query: 176 DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
+ ED D+D T G + +Q + S++ L AK ++ L
Sbjct: 485 -ILGDEDHLGDMDFKVAGTRDG-VTSIQMDIKIKGLSKEILQEALEQAKKARMHILDLMY 542
Query: 236 DV 237
Sbjct: 543 KA 544
Score = 94.9 bits (234), Expect = 8e-18, Method: Composition-based stats.
Identities = 51/235 (21%), Positives = 86/235 (36%), Gaps = 28/235 (11%)
Query: 13 EISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRN----TKHGWITAEYGMLP 67
IS+ +K + G+ +V+ G+T + A + E+ I + T YG +P
Sbjct: 20 PISIETGYFAKQSNGAVIVRQGETAVFVAAVISEEAQADIDFLPLTVDYREKTYAYGKIP 79
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R G+ R + R+I R +R + I
Sbjct: 80 GGFVKR------EGKPTVREILVSRLIDRPIRPMFPKGFFNDVIITAMTLSADDKYDPDV 133
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
AI GA ALH +G VA + L G IV+ Y + + D+
Sbjct: 134 LAIVGASAALH-------------ITEAPFEGPVAGVRVCRLDGEFIVNPTYEQRNRSDI 180
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNEV 242
D T IV V+G +E + ++ + A + I L LQ++ + ++V
Sbjct: 181 DIVVAGTKD-AIVMVEGGSEEVS--EEVILDAILFAHEEIKKLCDLQEE-LRSKV 231
>gi|91216373|ref|ZP_01253340.1| putative polyribonucleotide nucleotidyltransferase [Psychroflexus
torquis ATCC 700755]
gi|91185511|gb|EAS71887.1| putative polyribonucleotide nucleotidyltransferase [Psychroflexus
torquis ATCC 700755]
Length = 683
Score = 152 bits (383), Expect = 5e-35, Method: Composition-based stats.
Identities = 47/243 (19%), Positives = 82/243 (33%), Gaps = 20/243 (8%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
+RL GR+ +++R I GS + G+T L T TL E +
Sbjct: 281 LRLDGRKTDEIRPIWCEVAYLPSVHGSAIFTRGETQALATVTLGTSREASTIDMPTHQGE 340
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P TG S R+ G RAL+ ++ + I
Sbjct: 341 EKFYLHYNFPPFCTGEAYPIRGTSRREIGHGNL----AQRALKGMIP--ESNPYTVRIVS 394
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V++++G + A + +A+ D M+ + + + G A+
Sbjct: 395 EVLESNGSSSMATVCAGTMAMMDAGIKMKKPVSGIAMGLISDGDRHAVLSD--------- 445
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T G I Q + + L A+ +++ D
Sbjct: 446 ILGDEDHLGDMDFKVTGTADG-ITACQMDIKVKGLPYEILVKALQQARAGRLHILEKLTD 504
Query: 237 VIS 239
IS
Sbjct: 505 TIS 507
Score = 76.8 bits (187), Expect = 3e-12, Method: Composition-based stats.
Identities = 30/206 (14%), Positives = 58/206 (28%), Gaps = 25/206 (12%)
Query: 32 FGDTHLLTTA---TLEEKVPMWIRNTKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQ 88
GDT LL T E K+ + + A G P R R
Sbjct: 1 MGDTMLLCTVVSSYKESKMDFFPLTVDYREKFAAAGRYPGGFFKR------EARPSDGEV 54
Query: 89 EIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCS 148
R++ R LR + Q++I D L + +
Sbjct: 55 LTMRIVDRVLRPLFPSDYRTETQVMIQLMSHDEDVMPDA-------------LAGLAASA 101
Query: 149 NKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAER 208
+ ++ + G +++ + D+D ++ V+ E
Sbjct: 102 AIQLSDIPFETAISEARVARINGEFVINPSRSQLKESDIDMII-GASMDSVMMVE--GEM 158
Query: 209 ATFSQDHFFAMLNLAKDRIADLIKLQ 234
S++ + A + I ++ Q
Sbjct: 159 KEISEEEMAEAIQFAHEHIKKQVEAQ 184
>gi|217077873|ref|YP_002335591.1| polynucleotide phosphorylase/polyadenylase [Thermosipho africanus
TCF52B]
gi|257096711|sp|B7IE23|PNP_THEAB RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|217037728|gb|ACJ76250.1| polyribonucleotide nucleotidyltransferase [Thermosipho africanus
TCF52B]
Length = 697
Score = 152 bits (383), Expect = 5e-35, Method: Composition-based stats.
Identities = 46/238 (19%), Positives = 85/238 (35%), Gaps = 18/238 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
+R GR+ +++R I+ V GS L G+T L TL EE++ I
Sbjct: 320 IRADGRKVDEIRPITCEVGVLPRTHGSALFTRGETQSLGIVTLGAPMEEQIVDTIMEEGT 379
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P S G R+ G RAL++VV + +
Sbjct: 380 KRFILHYNFPPFSVGEVKPLRGPGRREIGHGHL----AERALKAVVPSEEEFPYVVRVVS 435
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
++++++G + A + +AL D + + +++ + D
Sbjct: 436 EILESNGSSSMATVCSGSLALMDAGVPIRTHVAGVAMGLIIE---------DGQEVVLTD 486
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
+ ED D+D T +G I Q + A ++ L AK+ ++ +
Sbjct: 487 IQGLEDHWGDMDFKVAGTRNG-ITAFQMDCKVAGVGEELLKRALQQAKEARMKILDIM 543
Score = 102 bits (253), Expect = 6e-20, Method: Composition-based stats.
Identities = 43/234 (18%), Positives = 88/234 (37%), Gaps = 27/234 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----HGWITAEYGML 66
R++ + V+K + GS V+FGD+ +L TA + ++ + + G +
Sbjct: 13 RKMIVQHGKVAKQSAGSVWVQFGDSVVLATANISDRTIEGVDFVPLTVEYQEKFYAAGKI 72
Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
P R G+ + R+I R +R + Q+I+ + +
Sbjct: 73 PGGFIKR------EGKPSESAILSARLIDRPIRPLFPKYLRNDVQLIVTVLSVDGNTPPD 126
Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
I A +AL+ +G VA + G + G +V +
Sbjct: 127 VTGIIAASLALN-------------ISKIPFEGIVAGVRLGYVDGKFVVFPTEEQLEKSR 173
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
+D + I V+G A+ +++ L +A D I +I+ +++++S
Sbjct: 174 LDIVVAGSKD-AITMVEGEAKE--VTEEEMVNALMVAHDAIKQIIEFEEEILSQ 224
>gi|253701574|ref|YP_003022763.1| polynucleotide phosphorylase/polyadenylase [Geobacter sp. M21]
gi|259534126|sp|C6E2P5|PNP_GEOSM RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|251776424|gb|ACT19005.1| Polyribonucleotide nucleotidyltransferase [Geobacter sp. M21]
Length = 696
Score = 152 bits (383), Expect = 5e-35, Method: Composition-based stats.
Identities = 50/242 (20%), Positives = 86/242 (35%), Gaps = 18/242 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +R IS + A GS L G+T + ATL +E+ +
Sbjct: 312 RIDGRDTKTIRAISTEVSLLPRAHGSALFTRGETQSIVAATLGTSVDEQRIDSLYGDSRK 371
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G R A R+ G RAL+ V+ I I D
Sbjct: 372 KFMLHYNFPPYSVGETSFRLAPGRREIGHGML----AERALQQVLPKHDDFPYTIRIVSD 427
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A + G +++ D ++ + + +G AI +
Sbjct: 428 ITESNGSSSMATVCGGSLSMMDAGIPIKAPVAGIAMGLIKEGDDFAILSD---------I 478
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T G + +Q + +++ A L AK ++
Sbjct: 479 LGDEDHLGDMDFKVAGTAEG-VTALQMDIKIGGVTREIMSAALAQAKAGRIHILGEMAKT 537
Query: 238 IS 239
I+
Sbjct: 538 IA 539
Score = 100 bits (248), Expect = 2e-19, Method: Composition-based stats.
Identities = 44/234 (18%), Positives = 82/234 (35%), Gaps = 28/234 (11%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVP----MWIRNTKHGWITAEYGMLPR 68
I++ ++K A G+ ++K GDT +L TA + + + G +P
Sbjct: 14 ITIETGKIAKQASGAVMIKSGDTMVLVTAVAMKSAKEGQGFFPLTVNYQEKAYAGGRIPG 73
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
S R GR R+I R +R + L Q++ D
Sbjct: 74 SFFKR------EGRPSDNETLTCRLIDRPIRPLFPEGFLNDTQVMATVVSADKDNDPAIL 127
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
++ GA AL G +A + G + G I + E D++
Sbjct: 128 SMIGASAALM-------------VSDCPFAGPIAGVKVGRVNGAFIANPTAEELEKSDLE 174
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNEV 242
+ I+ V+GSA A S++ + + ++ Q + ++ +V
Sbjct: 175 IVIAASQE-AILMVEGSA--AEVSENDLLEAIFFGHAAVQPILAAQLE-LAKKV 224
>gi|260886704|ref|ZP_05897967.1| tRNA nucleotidyltransferase [Selenomonas sputigena ATCC 35185]
gi|330839468|ref|YP_004414048.1| ribonuclease PH [Selenomonas sputigena ATCC 35185]
gi|260863556|gb|EEX78056.1| tRNA nucleotidyltransferase [Selenomonas sputigena ATCC 35185]
gi|329747232|gb|AEC00589.1| ribonuclease PH [Selenomonas sputigena ATCC 35185]
Length = 248
Score = 152 bits (383), Expect = 5e-35, Method: Composition-based stats.
Identities = 114/242 (47%), Positives = 155/242 (64%), Gaps = 5/242 (2%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R+ GR + +R + + R K GS L++ G T ++ A++E++VP ++R T GWI A
Sbjct: 3 RIRGRAADALRPLKMMRGFQKGPAGSVLIEMGRTRVICAASVEDRVPYFLRGTGTGWIKA 62
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
EY +LP +T R REA GRQ GR+QEIQR+IGR+LRSVVDL+ALG R I +DCDVI+A
Sbjct: 63 EYALLPSATSTRTPREACQGRQSGRTQEIQRLIGRSLRSVVDLAALGERTIALDCDVIEA 122
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGM-LCGYPIVDLDYG 180
DGGTRTAAITGA+VAL + + + +K +AA+S G+ G PI+DL Y
Sbjct: 123 DGGTRTAAITGAFVALVEACASFYEKG----KTFPVKDFLAAVSVGLAQDGEPILDLCYE 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
EDST VD N VMT + VEVQG+ E FS+ +L LA+ + +LI QKD +
Sbjct: 179 EDSTALVDMNVVMTGAYDFVEVQGTGEGRPFSRREMADLLALAEKGVDELIARQKDALGG 238
Query: 241 EV 242
E+
Sbjct: 239 EL 240
>gi|212639515|ref|YP_002316035.1| polynucleotide phosphorylase/polyadenylase [Anoxybacillus
flavithermus WK1]
gi|226702595|sp|B7GG69|PNP_ANOFW RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|212560995|gb|ACJ34050.1| Polyribonucleotide nucleotidyltransferase (polynucleotide
phosphorylase) [Anoxybacillus flavithermus WK1]
Length = 702
Score = 152 bits (383), Expect = 5e-35, Method: Composition-based stats.
Identities = 46/244 (18%), Positives = 87/244 (35%), Gaps = 18/244 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56
+R GR+ +++R +S + GS L G T L+ T + ++ + +
Sbjct: 315 VRPDGRKVDEIRPLSSAVGLLPRTHGSGLFTRGQTQALSVCTLGALGDVQILDGLGIEET 374
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P S G R+ G RAL V+ I +
Sbjct: 375 KRFMHHYNFPPFSVGETGAMRGPGRREIGHGALG----ERALEPVIPSEKEFPYTIRLVS 430
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V++++G T A+I + +A+ D ++ + V G + D
Sbjct: 431 EVLESNGSTSQASICASTLAMMDAGVPIKAPVAGIAMGLVKSGE---------HYTILTD 481
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T+ G + +Q + S++ L A+ +++K
Sbjct: 482 IQGMEDHLGDMDFKVAGTEKG-VTALQMDIKIKGLSREILEEALQQARKGRLEILKHMMQ 540
Query: 237 VISN 240
IS
Sbjct: 541 TISE 544
Score = 116 bits (290), Expect = 3e-24, Method: Composition-based stats.
Identities = 45/235 (19%), Positives = 88/235 (37%), Gaps = 27/235 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATL---EEKVPMWIRNTKHGWITAEYGMLP 67
R +++ ++K A G+ LV++GDT +L+TAT + V + + G +P
Sbjct: 15 RPLTVEIGELAKQANGAVLVRYGDTVVLSTATASKEPKSVDFFPLTVNYEERLYAVGKIP 74
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R GR ++ R+I R +R + Q++ + D
Sbjct: 75 GGFIKR------EGRPSEKAILASRLIDRPIRPLFAEGFRNEVQVVSMVMSVDQDCSPEM 128
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
AA+ G+ +A +G +A ++ G + G +++ + D+
Sbjct: 129 AAMFGSSLA-------------LTISDIPFEGPIAGVTVGRVDGKFVINPSVAQMEQSDM 175
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNEV 242
T I V+ A ++ + + I LI Q+D I+ +V
Sbjct: 176 HLVVAGTKD-AINMVEAGANEVP--EEVMLEAIMFGHEEIKRLIAFQED-IAAKV 226
>gi|283769562|ref|ZP_06342458.1| polyribonucleotide nucleotidyltransferase [Bulleidia extructa
W1219]
gi|283103830|gb|EFC05216.1| polyribonucleotide nucleotidyltransferase [Bulleidia extructa
W1219]
Length = 732
Score = 152 bits (383), Expect = 5e-35, Method: Composition-based stats.
Identities = 43/244 (17%), Positives = 85/244 (34%), Gaps = 18/244 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
+R GR +++R + + GS L G+T +L+ TL + ++ + +
Sbjct: 318 IRPDGRALDELRSLDSQVDLLPRVHGSALFTRGETQVLSVTTLGPLSDAQMMDDLGMEEE 377
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
+Y P S G + + R+ G RAL V+ I
Sbjct: 378 KRFMHQYNFPPFSVGEVGRMGSPGRREIGHGALG----ERALAQVLPSEEEFPYAIRTSA 433
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V++++G + A+I ++L ++ + + G ++
Sbjct: 434 EVLESNGSSSQASICAGTMSLMAAGVPIKAMVAGVAMGLITVGDTYSVLTD--------- 484
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T G I +Q + SQD L A ++ +
Sbjct: 485 IQGMEDHYGDMDFKVAGTREG-ITALQMDIKVTGISQDILREALAQAHKGRMQILDNMEA 543
Query: 237 VISN 240
I+
Sbjct: 544 CIAE 547
Score = 106 bits (265), Expect = 2e-21, Method: Composition-based stats.
Identities = 45/231 (19%), Positives = 88/231 (38%), Gaps = 26/231 (11%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEK---VPMWIRNTKHGWITAEYGMLPRS 69
I++ ++K A GS +V++ DT +L+TAT + + + G +P
Sbjct: 15 ITVENGEIAKQAGGSVVVRYNDTTILSTATASSQAKDTDFFPLTVLYQEKMYAAGKIPGG 74
Query: 70 TGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAA 129
R GR + R+I R +R + Q++ D + A+
Sbjct: 75 FLRR------EGRPSEHATLTARLIDRPIRPLFAEGFRNEVQVVNTVLSNDPDASSEMAS 128
Query: 130 ITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDA 189
+ G+ +AL G VA + + G +++ E++ D+
Sbjct: 129 LFGSSLALC-------------ISDIPFNGPVAGVQVVRVNGEFLINPSVEENAKGDLHL 175
Query: 190 NFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
T I V+ A+ S++ A L + I L ++Q++VI++
Sbjct: 176 TVAGTKQ-AINMVEAGAKE--VSEETMLAALQFGHEAIQKLCEIQEEVIAS 223
>gi|194366584|ref|YP_002029194.1| polynucleotide phosphorylase/polyadenylase [Stenotrophomonas
maltophilia R551-3]
gi|226702692|sp|B4SQR6|PNP_STRM5 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|194349388|gb|ACF52511.1| Polyribonucleotide nucleotidyltransferase [Stenotrophomonas
maltophilia R551-3]
Length = 702
Score = 152 bits (383), Expect = 5e-35, Method: Composition-based stats.
Identities = 43/238 (18%), Positives = 85/238 (35%), Gaps = 18/238 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
+R+ GR + +R I++ V GS L G+T + T TL + +V +
Sbjct: 315 VRIDGRALDTVRPIAVKTSVLPRTHGSSLFTRGETQAIVTITLGTARDGQVIDAVSGEYK 374
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P S G + R+ G + R + +V+ I +
Sbjct: 375 ENFLFHYNFPPYSVGETGRMMGPKRREIGHGRL----AKRGVLAVMPSLESFPYTIRVVS 430
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
++ +++G + A++ G+ +AL D ++ + V +G +
Sbjct: 431 EITESNGSSSMASVCGSSLALMDAGVPVKAPVAGIAMGLVKEGDRFVVLSD--------- 481
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
+ ED D+D T G I +Q + +++ L AK ++
Sbjct: 482 ILGDEDHLGDMDFKVAGTAEG-ISALQMDIKIEGITEEIMKQALQQAKAGRLHILGEM 538
Score = 93.0 bits (229), Expect = 3e-17, Method: Composition-based stats.
Identities = 45/228 (19%), Positives = 79/228 (34%), Gaps = 27/228 (11%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTKHGWITAEYGMLPR 68
++L +++ A G+ +VKF DT LL +A + E + + G +P
Sbjct: 15 VTLETGEIARQAGGAVIVKFDDTVLLVSAVAAKSAREGQDFFPLTCDYQEKFYAGGRIPG 74
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
R GR + I R+I R +R + QII + +
Sbjct: 75 GFFKR------EGRATEKETLISRLIDRPIRPLFPEDYKNEVQIIATVMSLNPEIDGDIP 128
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+ GA AL KG +AA G G I++ E ++
Sbjct: 129 ALIGASAALSLAGT-------------PFKGPIAAAKVGYKDGEYILNPTVSELKESQLE 175
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
T + ++ V+ +E A S+D + + +I +
Sbjct: 176 LVVAGTAN-AVLMVE--SEAALLSEDVMLGAVTFGHREMQKVINAINE 220
>gi|257468232|ref|ZP_05632328.1| polynucleotide phosphorylase/polyadenylase [Fusobacterium ulcerans
ATCC 49185]
gi|317062514|ref|ZP_07926999.1| polyribonucleotide nucleotidyltransferase [Fusobacterium ulcerans
ATCC 49185]
gi|313688190|gb|EFS25025.1| polyribonucleotide nucleotidyltransferase [Fusobacterium ulcerans
ATCC 49185]
Length = 699
Score = 152 bits (383), Expect = 5e-35, Method: Composition-based stats.
Identities = 42/242 (17%), Positives = 89/242 (36%), Gaps = 18/242 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR+ ++R + V GS + G+T + TL +E++ +
Sbjct: 324 RVDGRKTTEIRPLFAEVGVLPIPHGSAMFTRGETQAVVVTTLGTKEDEQLVDDLEKEYFK 383
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + + R+ G RAL V+ I + +
Sbjct: 384 KFYLHYNFPPYSVGETGRMGSPGRRELGHGSL----AERALSYVIPSEESFPYTIRVVSE 439
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A+I G ++L +++ + + +G + ++
Sbjct: 440 ITESNGSSSQASICGGSLSLMAAGVPIKEHVAGIAMGLIKEGEEFTVLTDIM-------- 491
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T +G I +Q + +++ L A D +++ + +
Sbjct: 492 -GLEDHLGDMDFKVAGTKNG-ITALQMDIKITGITEEIMRIALKQALDARNEILVVMNNA 549
Query: 238 IS 239
IS
Sbjct: 550 IS 551
Score = 104 bits (259), Expect = 1e-20, Method: Composition-based stats.
Identities = 38/230 (16%), Positives = 78/230 (33%), Gaps = 27/230 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKV----PMWIRNTKHGWITAEYGML 66
R +S + +++ + G+ +V++G+T LL+T ++ + + G
Sbjct: 14 RTLSFSTGKIARQSCGAVMVQYGETVLLSTVNRSKEPRKGADFFPLTVDYIEKFYAAGKF 73
Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
P R GR + R+I R +R + I+
Sbjct: 74 PGGFNKR------EGRPSTNATLTARLIDRPIRPMFPEGFNHDVHIVNTVFSYDEKNTPD 127
Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
I G+ +AL G VA + G G I++ E T D
Sbjct: 128 YLGIIGSSMALM-------------LSDLPFLGPVAGVVVGYKDGEFILNPTPEELETSD 174
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
++ + + + V+ A+ ++ A + A + I + Q++
Sbjct: 175 LELSVAGSKD-AVNMVEAGAKE--LDEETMLAAIMFAHENIKKICAFQEE 221
>gi|313901841|ref|ZP_07835262.1| polyribonucleotide nucleotidyltransferase [Thermaerobacter
subterraneus DSM 13965]
gi|313467884|gb|EFR63377.1| polyribonucleotide nucleotidyltransferase [Thermaerobacter
subterraneus DSM 13965]
Length = 762
Score = 151 bits (382), Expect = 5e-35, Method: Composition-based stats.
Identities = 52/243 (21%), Positives = 90/243 (37%), Gaps = 19/243 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT-----K 55
+R GR+ ++R I + + A GS L + G T +LT A+L + +T +
Sbjct: 323 IRPDGRRPAEIRPIHVEVGLLPRAHGSGLFQRGQTQVLTVASLGAPGDRQMLDTLGQIEE 382
Query: 56 HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115
Y P STG A S R+ G RAL V+ I +
Sbjct: 383 FKRYMHHYNFPPYSTGEVAPLRAPSRREIGHGAL----AERALVPVLPDELDFPYTIRLV 438
Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIV 175
+V+ ++G T A+ G+ +AL D ++ + + +G A+
Sbjct: 439 SEVLSSNGSTSMASTCGSTLALMDAGVPIKAPVAGVAMGLIKEGDRFAVLTD-------- 490
Query: 176 DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
+ ED D+D T G + +Q + A + L A+ +++
Sbjct: 491 -IQGIEDHLGDMDFKVAGTREG-VTAIQMDIKIAGVDRAVLETALEQARAGRLFILEKML 548
Query: 236 DVI 238
VI
Sbjct: 549 AVI 551
Score = 106 bits (264), Expect = 3e-21, Method: Composition-based stats.
Identities = 50/240 (20%), Positives = 84/240 (35%), Gaps = 27/240 (11%)
Query: 6 RQENQMREISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEK----VPMWIRNTKHGWIT 60
R E R + + +++ A GS LV++GDT +L TAT ++ + +
Sbjct: 18 RTELAGRPLVVEIGQLAQQANGSALVRYGDTVILATATASKEPRQGIDFFPLRVDWEERL 77
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
G +P S R G+ R+ R+ R LR + QII+
Sbjct: 78 YAAGRIPGSFFRR------EGKPSERAILSGRLTDRPLRPLFPKGYRNDVQIIVTTLSYD 131
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
D A I GA VA G V A+ G+L G +++
Sbjct: 132 DDCSPEIAGIIGASVA-------------LGISDIPWNGPVGAVEVGLLDGELVINPTAA 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
+ +D T I V+ A + + + I L++ Q+ +I+
Sbjct: 179 QREHSRLDLTVAGTRD-AINMVEAGAHEVP--EATILDAIFRGHEEIRRLVEFQEAIIAQ 235
>gi|229592632|ref|YP_002874751.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas fluorescens
SBW25]
gi|259534147|sp|C3K255|PNP_PSEFS RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|229364498|emb|CAY52345.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas fluorescens
SBW25]
Length = 701
Score = 151 bits (382), Expect = 5e-35, Method: Composition-based stats.
Identities = 45/243 (18%), Positives = 91/243 (37%), Gaps = 18/243 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +R +++ V GS L G+T L ATL + ++ + K
Sbjct: 316 RIDGRDTRTVRPLNIEVGVLPKTHGSALFTRGETQALVVATLGTARDAQLLDTLEGEKKD 375
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + R+ G + R++ +++ + + I + +
Sbjct: 376 PFMLHYNFPPFSVGECGRMGGAGRREIGHGRL----ARRSISAMLPAADVFPYTIRVVSE 431
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ GA +AL D M+ + V +G AI +
Sbjct: 432 ITESNGSSSMASVCGASLALMDAGVPMKAPVAGIAMGLVKEGQKFAILTD---------I 482
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T G + +Q + +++ L A + +++ +
Sbjct: 483 LGDEDHLGDMDFKVAGTAKG-VTALQMDIKIKGITEEIMEIALGQALEARLNILGQMNQI 541
Query: 238 ISN 240
I
Sbjct: 542 IGQ 544
Score = 74.1 bits (180), Expect = 2e-11, Method: Composition-based stats.
Identities = 28/200 (14%), Positives = 58/200 (29%), Gaps = 23/200 (11%)
Query: 42 TLEEKVPMWIRNTKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSV 101
T + + + + T G +P R GR + R+I R +R +
Sbjct: 49 TADPSKGFFPLSVHYQEKTYAAGKIPGGFFKR------EGRPSEKETLTSRLIDRPIRPL 102
Query: 102 VDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHV 161
+ Q++ AA+ G A G +
Sbjct: 103 FPEGFMNEVQVVCTVVSTSKKTDPDIAAMIGTSAA-------------LAISGIPFDGPI 149
Query: 162 AAISCGMLCGY-PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAML 220
A +++ Y + +D T ++ V+ A+ ++D +
Sbjct: 150 GAARVAFHESTGYLLNPTYEQQKASSLDMVVAGTSE-AVLMVESEAKE--LTEDQMLGAV 206
Query: 221 NLAKDRIADLIKLQKDVISN 240
A D +I K++ +
Sbjct: 207 LFAHDEFQVVINAVKELAAE 226
>gi|330877224|gb|EGH11373.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas syringae
pv. morsprunorum str. M302280PT]
Length = 630
Score = 151 bits (382), Expect = 5e-35, Method: Composition-based stats.
Identities = 45/243 (18%), Positives = 92/243 (37%), Gaps = 18/243 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +R +++ V GS L G+T L ATL + ++ + K
Sbjct: 245 RIDGRDTRTVRPLNIEVGVLPKTHGSALFTRGETQALVVATLGTARDAQLLDTLEGEKKD 304
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + R+ G + R++++++ + + I + +
Sbjct: 305 PFMLHYNFPPFSVGECGRMGGAGRREIGHGRL----ARRSVQAMLPGADVFPYTIRVVSE 360
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ GA +AL D M+ + V +G AI +
Sbjct: 361 ITESNGSSSMASVCGASLALMDAGVPMKAPVAGIAMGLVKEGEKFAILTD---------I 411
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T G + +Q + +++ L A + +++ +
Sbjct: 412 LGDEDHLGDMDFKVAGTSKG-VTALQMDIKIKGITEEIMEIALGQALEARLNILGQMNQI 470
Query: 238 ISN 240
I
Sbjct: 471 IGQ 473
Score = 71.0 bits (172), Expect = 1e-10, Method: Composition-based stats.
Identities = 26/177 (14%), Positives = 51/177 (28%), Gaps = 23/177 (12%)
Query: 65 MLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGG 124
+P R GR + R+I R +R + + Q++
Sbjct: 1 KIPGGFFKR------EGRPSEKETLTSRLIDRPIRPLFPEGFMNEVQVVCTVVSTSKKID 54
Query: 125 TRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY-PIVDLDYGEDS 183
AA+ G A G V A +++ Y +
Sbjct: 55 PDIAAMIGTSAA-------------LAISGIPFDGPVGAARVAFHESTGYLLNPTYEQLQ 101
Query: 184 TIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
+D T ++ V+ A+ ++D + A D +I K++ +
Sbjct: 102 ASSLDMVVAGTSE-AVLMVESEAKE--LTEDQMLGAVLFAHDEFQVVINAIKELAAE 155
>gi|307244366|ref|ZP_07526479.1| polyribonucleotide nucleotidyltransferase [Peptostreptococcus
stomatis DSM 17678]
gi|306492267|gb|EFM64307.1| polyribonucleotide nucleotidyltransferase [Peptostreptococcus
stomatis DSM 17678]
Length = 696
Score = 151 bits (382), Expect = 5e-35, Method: Composition-based stats.
Identities = 41/244 (16%), Positives = 82/244 (33%), Gaps = 18/244 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56
+R R +++R I + GS + G T +L T + + + ++
Sbjct: 316 VRPDNRSLDEIRPIWCEVGMIPRTHGSAIFTRGQTQVLNVTTLGALGDVQRLDGLDEEEN 375
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y S G R+ G RAL V+ I +
Sbjct: 376 KRYMHHYNFPAYSVGETRPSRGPGRREIGHGAL----AERALLPVIPSKEDFPYAIRLVS 431
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V+ ++G T A++ + ++L D ++D + + A+
Sbjct: 432 EVLSSNGSTSQASVCASTLSLLDAGVPIKDMVAGIAMGLIKHHGKVAVLSD--------- 482
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T+ G + +Q + A + L A++ ++ K
Sbjct: 483 IQGMEDHLGDMDFKVAGTEKG-VTAIQMDIKIAGIDEPVLRQALKQAREGRLHILGEMKK 541
Query: 237 VISN 240
VI+
Sbjct: 542 VITE 545
Score = 85.7 bits (210), Expect = 5e-15, Method: Composition-based stats.
Identities = 34/234 (14%), Positives = 81/234 (34%), Gaps = 27/234 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT----KHGWITAEYGML 66
R +++ +++ G+C++ +GDT L+ T + I G +
Sbjct: 14 RTLTVEIGKIAEMTNGNCIISYGDTMLMVNVTKSAQPRDGIDFFPLSVDFEEKLYSVGKI 73
Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
P R GR ++ R+I R +R + Q++ ++ D
Sbjct: 74 PGGFLKR------EGRASEKATLTSRLIDRPIRPLFPEGFRNDVQVVATVLSVEQDCTPD 127
Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
A+ G+ +A G A++ G++ G +++ + + D
Sbjct: 128 IVAMLGSSIA-------------LSISDIPFNGPTASVLVGLIDGEFVLNPNQQQREDSD 174
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
+ T I+ V+ A + + A + I +++ + +++
Sbjct: 175 LHLVVSGTKE-AIMMVEAGANE--VDDNVVLDGILYAHEEIKKIVEFIEGIVAE 225
>gi|54298752|ref|YP_125121.1| polynucleotide phosphorylase/polyadenylase [Legionella pneumophila
str. Paris]
gi|81369705|sp|Q5X1C7|PNP_LEGPA RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|53752537|emb|CAH13969.1| Polynucleotide phosphorylase (PNPase) [Legionella pneumophila str.
Paris]
Length = 729
Score = 151 bits (382), Expect = 5e-35, Method: Composition-based stats.
Identities = 44/240 (18%), Positives = 89/240 (37%), Gaps = 10/240 (4%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R+ GR +R IS+ + + GSCL G+T + ATL + I + G
Sbjct: 314 RIDGRDHRTVRPISIRTKFLERTHGSCLFTRGETQAIVVATLGNERDAQILDGISGETRD 373
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
+ + V G R R+ RAL +V+ + + I ++ ++
Sbjct: 374 RFMLHYNFPPYSVGETGQVGSPKRREIGHGRLAKRALMAVLPDTNEFPYVLRIVSEITES 433
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
+G + A + G +AL D ++ + + +G A+ + E
Sbjct: 434 NGSSSMATVCGTSLALMDAGVPLKAPVAGVAMGLIKEGDRYAVLTD---------ILGDE 484
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
D D+D T+ G I +Q + + + + L A + ++ + + ++
Sbjct: 485 DHLGDMDFKVAGTEKG-ITALQMDIKISGITNEIMERALEQALEGRTHILGVMNNALAEH 543
Score = 98.8 bits (244), Expect = 7e-19, Method: Composition-based stats.
Identities = 41/235 (17%), Positives = 76/235 (32%), Gaps = 28/235 (11%)
Query: 13 EISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGMLP 67
++ L V++ A+G+ + T +L T E + + G +P
Sbjct: 14 KLILETGEVARQADGAVMASMNGTQVLVTVVWKKDSGESNDFFPLTVNYQEKFYAIGKIP 73
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R GR I R+I R +R + + QII + +
Sbjct: 74 GGFNKR------EGRPSDNETLISRLIDRPIRPLFPDNFFNEVQIIATVLSLNPEVSPDI 127
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
A+ GA A G + A G G +++ E +
Sbjct: 128 IAMIGASAA-------------LSISGVPFNGPIGAARVGYKDGVYLLNPSRKEQEESKL 174
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNEV 242
D T I+ V+ A+ S+D + + + +IK ++ ++ EV
Sbjct: 175 DLVIAGTKD-AILMVESEAQE--LSEDIMRGAMLYGHEMMKSVIKSIEE-LAREV 225
>gi|330504823|ref|YP_004381692.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas mendocina
NK-01]
gi|328919109|gb|AEB59940.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas mendocina
NK-01]
Length = 701
Score = 151 bits (382), Expect = 5e-35, Method: Composition-based stats.
Identities = 47/243 (19%), Positives = 92/243 (37%), Gaps = 18/243 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +R +++ V GS L G+T L ATL + ++ + K
Sbjct: 316 RIDGRDTRTVRGLNIEVGVLDKTHGSALFTRGETQALVVATLGTARDAQLLDTLEGEKKD 375
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + A R+ G + R + +++ + I + +
Sbjct: 376 PFMLHYNFPPYSVGECGRMGATGRREIGHGRL----ARRGVAAMLPSADEFPYTIRVVSE 431
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ GA +AL D M+ + VL+G A+ +
Sbjct: 432 ITESNGSSSMASVCGASLALMDAGVPMKAPVAGIAMGLVLEGDKFAVLTD---------I 482
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T G + +Q + +++ L A + +++ V
Sbjct: 483 LGDEDHLGDMDFKVAGTAKG-VTALQMDIKIQGITEEIMEQALEQALEARLNILGQMNQV 541
Query: 238 ISN 240
I+
Sbjct: 542 IAQ 544
Score = 98.0 bits (242), Expect = 1e-18, Method: Composition-based stats.
Identities = 33/234 (14%), Positives = 71/234 (30%), Gaps = 29/234 (12%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTH-LLTTATLEEKVPM----WIRNTKHGWITAEYGMLP 67
++L +++ A G+ LV D +L T + + + + T G +P
Sbjct: 15 VTLETGRIARQASGAVLVTVDDDVSVLVTVVGAKSADPSKGFFPLSVHYQEKTYAAGKIP 74
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R R + R+I R +R + Q+I
Sbjct: 75 GGFFKR------EARPSEKETLTSRLIDRPIRPLFPEGFQNEVQVICTVVSTSKKTDPDI 128
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY-PIVDLDYGEDSTID 186
AA+ G A G + A +++ +Y +
Sbjct: 129 AAMIGTSAA-------------LAISGIPFNGPIGAARVAFHPETGYLLNPNYEQLKASS 175
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
+D T ++ V+ A+ ++D + A + +I+ ++ +
Sbjct: 176 LDMVVAGTKD-AVLMVESEAKE--LTEDQMLGAVLFAHEEFQVVIQAVAELAAE 226
>gi|254446979|ref|ZP_05060446.1| polyribonucleotide nucleotidyltransferase [gamma proteobacterium
HTCC5015]
gi|198263118|gb|EDY87396.1| polyribonucleotide nucleotidyltransferase [gamma proteobacterium
HTCC5015]
Length = 698
Score = 151 bits (382), Expect = 6e-35, Method: Composition-based stats.
Identities = 40/241 (16%), Positives = 83/241 (34%), Gaps = 18/241 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +R IS+ V GS L G+T L TL + ++ +
Sbjct: 316 RIDGRDTRTVRPISVKTGVLPRTHGSALFTRGETQALVVTTLGTERDAQLIDDLAGEYKD 375
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P G + R+ G + R +++V+ I +
Sbjct: 376 NFLFHYNFPPYCVGETGFIGSPKRREIGHGKL----AKRGVQAVMPAQDDFPYTIRAVSE 431
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ G+ +A+ D ++ + + +G A+ +
Sbjct: 432 ITESNGSSSMASVCGSSLAMMDAGVPLKAPVAGIAMGLIKEGDQFAVLTD---------I 482
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T G + +Q + +++ L AK ++
Sbjct: 483 LGDEDHLGDMDFKVAGT-DGGVTALQMDIKIQGITREIMAQALEEAKAGRLHILGEMAKE 541
Query: 238 I 238
+
Sbjct: 542 L 542
Score = 111 bits (277), Expect = 9e-23, Method: Composition-based stats.
Identities = 41/235 (17%), Positives = 84/235 (35%), Gaps = 28/235 (11%)
Query: 13 EISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPM----WIRNTKHGWITAEYGMLP 67
+++ V++ A GS +V DT +L TAT ++ + + T G +P
Sbjct: 14 PVTIETGEVARQATGSVIVNMNDTVVLVTATGRKEAKPDQAFFPLTVNYQEKTYAAGKIP 73
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
S R GR + R+I R +R + + QI+ + +
Sbjct: 74 GSFFKR------EGRPSEKETLTARLIDRPIRPLFPKGFMNEVQIVATVVSLNPEVDPEV 127
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
A+ G A G + A G G +++ + T D+
Sbjct: 128 PAMIGTSAA-------------LSISGIPFDGPIGAAQVGYRDGEYLLNPSKTDLETSDL 174
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNEV 242
T+ ++ V+ +E S+D + +++ +++ K+ ++ EV
Sbjct: 175 ALTVAGTED-AVLMVE--SEANCLSEDIMLGAVMFGHEKMQAVVQAVKE-LAEEV 225
>gi|229815851|ref|ZP_04446175.1| hypothetical protein COLINT_02905 [Collinsella intestinalis DSM
13280]
gi|229808546|gb|EEP44324.1| hypothetical protein COLINT_02905 [Collinsella intestinalis DSM
13280]
Length = 244
Score = 151 bits (382), Expect = 6e-35, Method: Composition-based stats.
Identities = 120/236 (50%), Positives = 160/236 (67%), Gaps = 4/236 (1%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R +GR NQMR ++LTR V K+A GSCLV+FGDT +L AT+EE VP W + + GW+TA
Sbjct: 8 RANGRAANQMRTVNLTRDVMKHALGSCLVEFGDTKVLCAATIEEGVPGWRKASHQGWVTA 67
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
EY MLP ST R +RE + + GRS EI+R+IGR+LR+VV++ +LG + +DCDVIQA
Sbjct: 68 EYAMLPASTNRRTRRETNNRK--GRSMEIERLIGRSLRTVVNMKSLGEHTVTVDCDVIQA 125
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
DGGTRTA+ITGAWVALHD L + L G VAA+S G++ G ++DLDY E
Sbjct: 126 DGGTRTASITGAWVALHDALMAWVEA--GKIARLPLTGQVAAVSMGLVDGCELLDLDYSE 183
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
DS +VD N V TD+G I+E+QG+ E+ F + +L+L + I LI LQ +V
Sbjct: 184 DSHAEVDMNLVATDAGEIIEIQGTGEQTPFDRARLNRLLDLGELGIKQLIDLQNEV 239
>gi|149909276|ref|ZP_01897932.1| polyribonucleotide nucleotidyltransferase [Moritella sp. PE36]
gi|149807593|gb|EDM67541.1| polyribonucleotide nucleotidyltransferase [Moritella sp. PE36]
Length = 705
Score = 151 bits (382), Expect = 6e-35, Method: Composition-based stats.
Identities = 45/242 (18%), Positives = 87/242 (35%), Gaps = 18/242 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +R +S+ V GS L G+T L TATL + + +
Sbjct: 314 RIDGRDPEMIRALSVMTGVLPRTHGSALFTRGETQALVTATLGTERDAQRIDSLTGETID 373
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P G + R+ G + R + +V+ + + + +
Sbjct: 374 RFLMHYNFPPYCVGETGMVGSPKRREIGHGRL----AKRGVLAVMPNADEFPYTVRVVSE 429
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ G +AL D ++ + VL G + I +
Sbjct: 430 ITESNGSSSMASVCGTSLALMDAGVPIKASVAGIAMGLVLDGDRSVILSD---------I 480
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D + +G I +Q + ++D L AK ++ +
Sbjct: 481 LGDEDHLGDMDFKVAGSSAG-ITALQMDIKIEGITKDIMQKALVQAKAARLHILSVMDQA 539
Query: 238 IS 239
I+
Sbjct: 540 IA 541
Score = 98.4 bits (243), Expect = 7e-19, Method: Composition-based stats.
Identities = 35/228 (15%), Positives = 73/228 (32%), Gaps = 27/228 (11%)
Query: 14 ISLTRRV-SKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGMLPR 68
++L V ++ A + + GDT +L + E + + T G +P
Sbjct: 15 VTLETGVIARQATAAVMASIGDTSVLVSVVGKKQAEAGRDFFPLTVNYQERTYAAGKIPG 74
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
R GR R+I R +R + Q++ + +
Sbjct: 75 GFFKR------EGRPSEGETLTCRLIDRPIRPLFPAGFKNEVQVVATVVSVNPEIQPDLV 128
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+ G A G + A G I++ E + +D
Sbjct: 129 ALIGVSAA-------------LSISGMPFNGPIGAARIGFQNDEYILNPSTSELAESQLD 175
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
T++ ++ V+ AE S++ + +++ +I+ K+
Sbjct: 176 LVVAGTEN-AVLMVESEAEI--LSEEQMLGAVMYGHEQMQVVIEAIKE 220
>gi|328553436|gb|AEB23928.1| polynucleotide phosphorylase/polyadenylase [Bacillus
amyloliquefaciens TA208]
gi|328911772|gb|AEB63368.1| polynucleotide phosphorylase (PNPase) [Bacillus amyloliquefaciens
LL3]
Length = 707
Score = 151 bits (382), Expect = 6e-35, Method: Composition-based stats.
Identities = 43/244 (17%), Positives = 84/244 (34%), Gaps = 18/244 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56
+R GR +Q+R +S + GS L G T L+ T + ++ + +
Sbjct: 315 VRPDGRGVDQIRPLSSEVGLLPRTHGSGLFTRGQTQALSVCTLGALGDVQILDGLGVEES 374
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y S G R+ G RAL V+ + +
Sbjct: 375 KRFMHHYNFPQFSVGETGPMRGPGRREIGHGALG----ERALEPVIPNEKDFPYTVRLVS 430
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V++++G T A+I + +A+ D ++ + V G + D
Sbjct: 431 EVLESNGSTSQASICASTLAMMDAGVPIKAPVAGIAMGLVKSGE---------YYTVLTD 481
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED+ D+D T+ G + +Q + S++ L AK +++
Sbjct: 482 IQGMEDALGDMDFKVAGTEKG-VTALQMDIKIEGLSREILEEALQQAKKGRMEILNSMLS 540
Query: 237 VISN 240
+
Sbjct: 541 TLGE 544
Score = 118 bits (294), Expect = 1e-24, Method: Composition-based stats.
Identities = 42/232 (18%), Positives = 92/232 (39%), Gaps = 26/232 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKV---PMWIRNTKHGWITAEYGMLP 67
R++++ ++K A G+ +V++GDT +L+TAT ++ + + G +P
Sbjct: 15 RQLTVETGQLAKQANGAVMVRYGDTAVLSTATASKEPKPLDFFPLTVNYEERLYAVGKIP 74
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R GR ++ R+I R +R + Q+I + + +
Sbjct: 75 GGFIKR------EGRPSEKAVLASRLIDRPIRPLFADGFRNEVQVISIVMSVDQNCSSEM 128
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
AA+ G+ +AL +G +A ++ G + G I++ + D+
Sbjct: 129 AAMFGSSLALC-------------VSDIPFEGPIAGVTVGRIDGQFIINPTVDQLEKSDI 175
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
+ T I V+ A+ ++ + + I LI Q+++++
Sbjct: 176 NLIVAGTKD-AINMVEAGADEVP--EEIMLEAIMFGHEEIKRLIAFQEEIVA 224
>gi|308173632|ref|YP_003920337.1| polynucleotide phosphorylase (PNPase) [Bacillus amyloliquefaciens
DSM 7]
gi|307606496|emb|CBI42867.1| polynucleotide phosphorylase (PNPase) [Bacillus amyloliquefaciens
DSM 7]
Length = 705
Score = 151 bits (382), Expect = 6e-35, Method: Composition-based stats.
Identities = 43/244 (17%), Positives = 84/244 (34%), Gaps = 18/244 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56
+R GR +Q+R +S + GS L G T L+ T + ++ + +
Sbjct: 315 VRPDGRGVDQIRPLSSEVGLLPRTHGSGLFTRGQTQALSVCTLGALGDVQILDGLGVEES 374
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y S G R+ G RAL V+ + +
Sbjct: 375 KRFMHHYNFPQFSVGETGPMRGPGRREIGHGALG----ERALEPVIPNEKDFPYTVRLVS 430
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V++++G T A+I + +A+ D ++ + V G + D
Sbjct: 431 EVLESNGSTSQASICASTLAMMDAGVPIKAPVAGIAMGLVKSGE---------YYTVLTD 481
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED+ D+D T+ G + +Q + S++ L AK +++
Sbjct: 482 IQGMEDALGDMDFKVAGTEKG-VTALQMDIKIEGLSREILEEALQQAKKGRMEILNSMLS 540
Query: 237 VISN 240
+
Sbjct: 541 TLGE 544
Score = 118 bits (294), Expect = 1e-24, Method: Composition-based stats.
Identities = 42/232 (18%), Positives = 92/232 (39%), Gaps = 26/232 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKV---PMWIRNTKHGWITAEYGMLP 67
R++++ ++K A G+ +V++GDT +L+TAT ++ + + G +P
Sbjct: 15 RQLTVETGQLAKQANGAVMVRYGDTAVLSTATASKEPKPLDFFPLTVNYEERLYAVGKIP 74
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R GR ++ R+I R +R + Q+I + + +
Sbjct: 75 GGFIKR------EGRPSEKAVLASRLIDRPIRPLFADGFRNEVQVISIVMSVDQNCSSEM 128
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
AA+ G+ +AL +G +A ++ G + G I++ + D+
Sbjct: 129 AAMFGSSLALC-------------VSDIPFEGPIAGVTVGRIDGQFIINPTVDQLEKSDI 175
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
+ T I V+ A+ ++ + + I LI Q+++++
Sbjct: 176 NLIVAGTKD-AINMVEAGADEVP--EEIMLEAIMFGHEEIKRLIAFQEEIVA 224
>gi|78187489|ref|YP_375532.1| polynucleotide phosphorylase/polyadenylase [Chlorobium luteolum DSM
273]
gi|123582727|sp|Q3B2E2|PNP_PELLD RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|78167391|gb|ABB24489.1| Polyribonucleotide nucleotidyltransferase [Chlorobium luteolum DSM
273]
Length = 732
Score = 151 bits (382), Expect = 6e-35, Method: Composition-based stats.
Identities = 46/241 (19%), Positives = 85/241 (35%), Gaps = 18/241 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
RL GR Q+R I++ V A GS L G+T L TL + + + N+
Sbjct: 332 RLDGRNLEQVRPITIELGVIPRAHGSALFTRGETQALVAVTLGTKKDAQSVDTLTNSADK 391
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + + R+ G R+++ V + I +
Sbjct: 392 RFMLHYNFPPFSVGEVGRLGSTGRREIGHGNL----AERSIKMVAPGEQEFPYTVRIVSE 447
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+++++G + A++ G +AL D ++ + + + G A+ +
Sbjct: 448 ILESNGSSSMASVCGGTLALMDGGVPLKKPVSGIAMGLIKDGEEYAVLSD---------I 498
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T G I Q + L A+ ++ ++
Sbjct: 499 LGNEDHLGDMDFKVAGTRDG-ITACQMDIKIDGLDYHILENALAQARRGRFHILDKMEEA 557
Query: 238 I 238
I
Sbjct: 558 I 558
Score = 112 bits (280), Expect = 3e-23, Method: Composition-based stats.
Identities = 43/235 (18%), Positives = 79/235 (33%), Gaps = 29/235 (12%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVP-----MWIRNTKHGWITAEYGMLP 67
IS+ ++K A+G+ +V+ GDT ++ T K P + ++ G P
Sbjct: 15 ISIETGRMAKQADGATVVRMGDTMVIATVVSSRKTPSVNQDFFPLQVEYREKYYAAGKFP 74
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R R + R+I RALR + Q+II+
Sbjct: 75 GGFFKR------EARPSEKEILSARLIDRALRPLFPTGYYHETQVIINVISSDQQNDADV 128
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
A A+ + ++ + G + G I++ E D+
Sbjct: 129 LGGLAASAAIM-------------VSDIPFENAMSEVRVGRVNGLFIINPTIDELEGSDI 175
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNEV 242
D + T I ++ E S+ + + I L +LQ + ++ EV
Sbjct: 176 DISIGGTAD-TICMLE--GEMKEISEAEMLDAIKFGHEAIKKLCQLQNE-LAGEV 226
>gi|325110867|ref|YP_004271935.1| RNAse PH [Planctomyces brasiliensis DSM 5305]
gi|324971135|gb|ADY61913.1| RNAse PH [Planctomyces brasiliensis DSM 5305]
Length = 245
Score = 151 bits (382), Expect = 6e-35, Method: Composition-based stats.
Identities = 113/243 (46%), Positives = 153/243 (62%), Gaps = 4/243 (1%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIR--NTKHGW 58
MR GRQ Q+R I + R + A GS +K G T LL TA+++ VP W + GW
Sbjct: 1 MRNDGRQAEQLRPIRVQRHFTGSAPGSVYIKAGRTTLLCTASVDLDVPPWKKHEENPSGW 60
Query: 59 ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDV 118
+TAEY MLP ST R +R + GRS EIQR+IGR+LR+VVD +ALG R I IDCDV
Sbjct: 61 VTAEYNMLPGSTSPRKRR--ERTKVDGRSSEIQRLIGRSLRAVVDFAALGPRTITIDCDV 118
Query: 119 IQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLD 178
++ADGGTRT ITG ++AL D L ++ ++L VAAIS G++ P++DLD
Sbjct: 119 LEADGGTRTLGITGGFIALVDALIWLQKQEPTCDPKKILTDTVAAISVGIVRQTPMLDLD 178
Query: 179 YGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
Y EDST +VD N VMT SG VE+QG+AE+ +FS+ L LA+ I +L ++Q+D
Sbjct: 179 YSEDSTAEVDLNVVMTGSGEFVEIQGTAEQKSFSRTQLDQQLGLAEKAIVELTRIQRDAF 238
Query: 239 SNE 241
++
Sbjct: 239 GDQ 241
>gi|154686086|ref|YP_001421247.1| polynucleotide phosphorylase/polyadenylase [Bacillus
amyloliquefaciens FZB42]
gi|187470933|sp|A7Z4U0|PNP_BACA2 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|154351937|gb|ABS74016.1| PnpA [Bacillus amyloliquefaciens FZB42]
Length = 707
Score = 151 bits (382), Expect = 6e-35, Method: Composition-based stats.
Identities = 43/244 (17%), Positives = 84/244 (34%), Gaps = 18/244 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56
+R GR +Q+R +S + GS L G T L+ T + ++ + +
Sbjct: 315 VRPDGRGVDQIRPLSSEVGLLPRTHGSGLFTRGQTQALSVCTLGALGDVQILDGLGVEES 374
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y S G R+ G RAL V+ + +
Sbjct: 375 KRFMHHYNFPQFSVGETGPMRGPGRREIGHGALG----ERALEPVIPNEKDFPYTVRLVS 430
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V++++G T A+I + +A+ D ++ + V G + D
Sbjct: 431 EVLESNGSTSQASICASTLAMMDAGVPIKAPVAGIAMGLVKSGE---------YYTVLTD 481
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED+ D+D T+ G + +Q + S++ L AK +++
Sbjct: 482 IQGMEDALGDMDFKVAGTEKG-VTALQMDIKIEGLSREILEEALQQAKKGRMEILNSMLS 540
Query: 237 VISN 240
+
Sbjct: 541 TLGE 544
Score = 114 bits (286), Expect = 8e-24, Method: Composition-based stats.
Identities = 42/232 (18%), Positives = 92/232 (39%), Gaps = 26/232 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKV---PMWIRNTKHGWITAEYGMLP 67
R++++ ++K A G+ +V++GDT +L+TAT ++ + + G +P
Sbjct: 15 RQLTVEAGQLAKQANGAVMVRYGDTAVLSTATASKEPKPLDFFPLTVNYEERLYAVGKIP 74
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R GR ++ R+I R +R + Q+I + D +
Sbjct: 75 GGFIKR------EGRPSEKAVLASRLIDRPIRPLFADGFRNEVQVISIVMSVDQDCSSEM 128
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
AA+ G+ +AL +G +A ++ G + G +++ + D+
Sbjct: 129 AAMFGSSLALC-------------VSDIPFEGPIAGVTVGRIDGKFVINPTVDQLEKSDI 175
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
+ T I V+ A+ ++ + + I LI Q+++++
Sbjct: 176 NLIVAGTKD-AINMVEAGADEVP--EEIMLEAIMFGHEEIKRLIAFQEEIVA 224
>gi|162447666|ref|YP_001620798.1| polyribonucleotide nucleotidyltransferase (PNPase) [Acholeplasma
laidlawii PG-8A]
gi|187470930|sp|A9NGE2|PNP_ACHLI RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|161985773|gb|ABX81422.1| polyribonucleotide nucleotidyltransferase (PNPase) [Acholeplasma
laidlawii PG-8A]
Length = 715
Score = 151 bits (382), Expect = 6e-35, Method: Composition-based stats.
Identities = 45/245 (18%), Positives = 82/245 (33%), Gaps = 19/245 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTK- 55
+R GR +++R ++ + + GS L G T L TL E ++ +
Sbjct: 327 VRPDGRGLDEIRPLASSVDLLPRTHGSALFTRGQTQALGIVTLGSLNENQIIDGLEQETV 386
Query: 56 HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115
Y P S G + A R+ G RAL V+ I +
Sbjct: 387 TKRFMLHYNFPPFSVGETGRYGAPGRREIGHGALG----ERALLQVLPSEDEFPYAIRVV 442
Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIV 175
++ +++G + A I +AL ++ + ++ G +I
Sbjct: 443 SEITESNGSSSQATICVGSMALMAAGVPIKAPVAGIAMGLIMDGEHYSILSD-------- 494
Query: 176 DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
+ ED D+D T G I +Q + + + L A+ ++
Sbjct: 495 -IQGMEDHEGDMDFKVAGTKDG-ITALQMDIKIQGITTEIMKEALEQARKGRLHILSHMN 552
Query: 236 DVISN 240
VIS
Sbjct: 553 TVISE 557
Score = 108 bits (270), Expect = 6e-22, Method: Composition-based stats.
Identities = 41/227 (18%), Positives = 83/227 (36%), Gaps = 26/227 (11%)
Query: 13 EISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKV---PMWIRNTKHGWITAEYGMLPR 68
+ + ++K A G+ ++ +GDT +L+TA + KV + + G +P
Sbjct: 14 PLRVEVGEIAKQANGAAMIYYGDTVVLSTAVAKAKVGQTDFFPLMVIYAEKQYAAGKIPG 73
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
R GR R+I R LR + D Q++ + ++ A
Sbjct: 74 GFFRR------EGRPSEVETLTSRLIDRPLRPLFDDGYRNEVQVVNTVLSSDPEASSQMA 127
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+ G+ +A + G +A G + G +++ + + D+D
Sbjct: 128 AMLGSSIA-------------LEISNIPFMGPIAGAHVGRIDGQFVLNPSSEQLNVSDID 174
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
T I V+ A++ S++ + + I +L Q+
Sbjct: 175 LIVAGTKD-AINMVEAGAKQ--VSEEVMLEAILFGHEAIKELCAFQE 218
>gi|163847604|ref|YP_001635648.1| polynucleotide phosphorylase/polyadenylase [Chloroflexus
aurantiacus J-10-fl]
gi|222525460|ref|YP_002569931.1| polynucleotide phosphorylase/polyadenylase [Chloroflexus sp.
Y-400-fl]
gi|187610252|sp|A9WEJ7|PNP_CHLAA RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|257096674|sp|B9LH03|PNP_CHLSY RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|163668893|gb|ABY35259.1| Polyribonucleotide nucleotidyltransferase [Chloroflexus aurantiacus
J-10-fl]
gi|222449339|gb|ACM53605.1| Polyribonucleotide nucleotidyltransferase [Chloroflexus sp.
Y-400-fl]
Length = 755
Score = 151 bits (382), Expect = 6e-35, Method: Composition-based stats.
Identities = 44/243 (18%), Positives = 88/243 (36%), Gaps = 17/243 (6%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56
+R+ GR +++R IS+ V GS + G T +LT T +E+ +
Sbjct: 320 IRVDGRALDEIRPISIEVGVIPRVHGSAVFTRGQTQVLTITTLGSPGDEQKVDDLGIETS 379
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P STG + R G R+L +V+ I +
Sbjct: 380 KRYIHHYNFPPFSTGEVRRIGTPRRRDIGHGAL----AERSLYAVLPDEKDFPYTIRLVS 435
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V+ ++G + A++ G+ ++L D ++ + + + + D
Sbjct: 436 EVLSSNGSSSMASVCGSSLSLMDAGVPIKAPVAGVAMGLI--------TGEDGRWRVLTD 487
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED+ D+D T G + +Q + + + A+ ++ +
Sbjct: 488 IQGLEDALGDMDFKVAGTAKG-VTGLQMDIKTTGITYEIMREAFAQARAGRLFILDKMNE 546
Query: 237 VIS 239
VIS
Sbjct: 547 VIS 549
Score = 99.5 bits (246), Expect = 3e-19, Method: Composition-based stats.
Identities = 45/232 (19%), Positives = 78/232 (33%), Gaps = 27/232 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKHGWITAEYGML 66
R ++L ++ A+G+ + ++GDT LL T E + + G +
Sbjct: 16 RTLTLEAGRFAEQADGAVVARYGDTMLLATVVCAKEAREGTDFFPLTVDYEEKMYAVGKI 75
Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
P + R GR + I R+ R LR + Q+II I +
Sbjct: 76 PGNFFKR------EGRPTTTAILISRLTDRPLRPLFPKGFYNEVQVIITTFSIDMENDPG 129
Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
AI A AL G V A+ G L G +V+ E +
Sbjct: 130 PLAIIAASAALC-------------ISDIPFAGPVGAVQMGHLNGQLVVNPKMNEIADSR 176
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
+D T ++ V+ A ++D + + LQ+ ++
Sbjct: 177 LDLVVAGTKD-AVLMVEAGAYE--LTEDEMLQAVIDGHAVCKQICDLQEQLV 225
>gi|330685657|gb|EGG97298.1| polyribonucleotide nucleotidyltransferase [Staphylococcus
epidermidis VCU121]
Length = 699
Score = 151 bits (382), Expect = 6e-35, Method: Composition-based stats.
Identities = 43/244 (17%), Positives = 88/244 (36%), Gaps = 18/244 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56
+R GR+ +++R + + A GS L G T L+ T + ++ + +
Sbjct: 318 IRPDGRKPDEIRPLESEVGLLPRAHGSGLFTRGQTQALSVLTLGALGDYQLIDGLGPEEE 377
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y S G A R+ G RAL+ ++ ++ + I
Sbjct: 378 KRFMHHYNFPNFSVGETGPVRAPGRREIGHGALG----ERALKYIIPDTSDFPYTVRIVS 433
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V++++G + A+I G+ +AL D ++ + V + + D
Sbjct: 434 EVLESNGSSSQASICGSTLALMDAGVPIKAPVAGIAMGLVTRED---------SYTILTD 484
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED+ D+D T G I +Q + +++ L A+ ++
Sbjct: 485 IQGMEDALGDMDFKVAGTKDG-ITAIQMDIKIDGLTREVIEEALEQARQGRLAIMDHMLQ 543
Query: 237 VISN 240
I
Sbjct: 544 TIDQ 547
Score = 109 bits (272), Expect = 4e-22, Method: Composition-based stats.
Identities = 43/231 (18%), Positives = 83/231 (35%), Gaps = 26/231 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKV---PMWIRNTKHGWITAEYGMLP 67
R +++ ++K A G+ LV++GDT +L+TAT ++ + + G +P
Sbjct: 15 RSLTIETGQLAKQANGAVLVRYGDTVVLSTATASKEPRDGDFFPLTVNYEEKMYAAGKIP 74
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R GR G + R+I R +R + QI+ D
Sbjct: 75 GGFKKR------EGRPGDDATLTARLIDRPIRPLFPKGYKHDVQIMNIVLSADPDCSPEM 128
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
AA+ G+ +A G +A ++ G + G +++ E +
Sbjct: 129 AAMIGSSMA-------------LSVSDIPFLGPIAGVNVGYVDGKYVINPTVAEKEVSRL 175
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
D + V+ A ++ + D I L+ Q+++I
Sbjct: 176 DLEVAGHKD-AVNMVEAGASE--ITESEMLEAIFFGHDEIKRLVAFQQEII 223
>gi|157364256|ref|YP_001471023.1| polynucleotide phosphorylase/polyadenylase [Thermotoga lettingae
TMO]
gi|187611328|sp|A8F725|PNP_THELT RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|157314860|gb|ABV33959.1| Polyribonucleotide nucleotidyltransferase [Thermotoga lettingae
TMO]
Length = 710
Score = 151 bits (382), Expect = 6e-35, Method: Composition-based stats.
Identities = 51/243 (20%), Positives = 86/243 (35%), Gaps = 18/243 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
RL R+ +R I+ + GS L G+T L TL +E++ +
Sbjct: 317 RLDMRKPKDIRPITCETGLLPRVHGSALFTRGETQSLGIVTLGAPMDEQIIDSLLEEGTK 376
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P STG S R+ G RAL+ V+ I I +
Sbjct: 377 RFMLHYNFPPFSTGEVKPLRGPSRREIGHGHL----AERALKFVLPDEDRFPYTIRIVSE 432
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+++++G + A + +AL D + + +L+ + D+
Sbjct: 433 ILESNGSSSMATVCSGSLALMDAGVPISKHVAGVAMGLILEKD---------SQIVLTDI 483
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T G I Q + + S D LN AK+ +++ +
Sbjct: 484 LGAEDHWGDMDFKVAGTRDG-ITAFQMDCKVSGVSADLLERALNQAKEARLYVLEKLYET 542
Query: 238 ISN 240
IS
Sbjct: 543 ISK 545
Score = 112 bits (280), Expect = 4e-23, Method: Composition-based stats.
Identities = 45/233 (19%), Positives = 82/233 (35%), Gaps = 27/233 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKHGWITAEYGML 66
RE + V+K A G+ + + GDT +L TA + E + + G +
Sbjct: 11 REFIVEHGKVAKQANGAVVARIGDTTVLATAVMSDSAVEGIDFVPLTVEFQERFYAAGKI 70
Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
P R G+ + R I R +R + Q+++ +
Sbjct: 71 PGGFIKR------EGKPSEMAILSARTIDRPIRPLFPKHLRNEVQVVVTVISTDSVNTPD 124
Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
+ A +AL+ G VAA+ G++ G ++ +
Sbjct: 125 IVGVFAASLALN-------------ISDIPFNGIVAAVRVGLVDGKIVLFPTEDQLQKSL 171
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
+D T+ I V+G A+ S+ L A D I +I +K+++S
Sbjct: 172 LDIVVAGTED-TITMVEGEAKE--VSESQMLQALLKAHDAIKQIIDFEKEILS 221
>gi|296329277|ref|ZP_06871778.1| polyribonucleotide nucleotidyltransferase [Fusobacterium nucleatum
subsp. nucleatum ATCC 23726]
gi|296153633|gb|EFG94450.1| polyribonucleotide nucleotidyltransferase [Fusobacterium nucleatum
subsp. nucleatum ATCC 23726]
Length = 699
Score = 151 bits (382), Expect = 6e-35, Method: Composition-based stats.
Identities = 46/243 (18%), Positives = 89/243 (36%), Gaps = 18/243 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR ++R + V GS L G+T L TL +E++ + +
Sbjct: 324 RVDGRTTTEIRPLDAQINVLPIPHGSALFTRGETQSLAITTLGTKEDEQLIDDLEKEYYK 383
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + + R+ G RAL V+ I + +
Sbjct: 384 KFYLHYNFPPYSVGEVGRMGSPGRRELGHGSL----AERALSYVIPTEEEFPYTIRVVSE 439
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A+I G ++L +++ + + +G + ++
Sbjct: 440 ITESNGSSSQASICGGSLSLMSAGVPIKEHVAGIAMGLIKEGEEFTVLTDIM-------- 491
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T SG I +Q + +++ LN A +++L +
Sbjct: 492 -GLEDHLGDMDFKVAGTKSG-ITALQMDIKITGITKEIMRIALNQAHQARIQILELMNNT 549
Query: 238 ISN 240
IS
Sbjct: 550 ISK 552
Score = 98.8 bits (244), Expect = 6e-19, Method: Composition-based stats.
Identities = 37/230 (16%), Positives = 78/230 (33%), Gaps = 27/230 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGML 66
R + ++ +S+ + G+ ++++GDT LL+TA + + + G
Sbjct: 14 RTLKVSTGKISRQSSGAIVIQYGDTVLLSTANRSKEARKGADFFPLTVDYIEKFYSSGKF 73
Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
P R GR + + R+I R +R + I+
Sbjct: 74 PGGFNKR------EGRPSTNATLVARLIDRPIRPMFPDGFNYDVHIVNTVLSYDEINIPD 127
Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
+ G+ +AL G VA++ G G I++ E +
Sbjct: 128 YLGVIGSSLALM-------------ISDIPFLGPVASVIVGYKNGEFILNPSPKELEESE 174
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+D T + V+ A+ ++ + A + I + + Q++
Sbjct: 175 LDLIVAGTKE-AVNMVEAGAKE--LDEETMLKAIMFAHENIKKICEFQEE 221
>gi|257126136|ref|YP_003164250.1| ribonuclease PH [Leptotrichia buccalis C-1013-b]
gi|257050075|gb|ACV39259.1| ribonuclease PH [Leptotrichia buccalis C-1013-b]
Length = 231
Score = 151 bits (382), Expect = 6e-35, Method: Composition-based stats.
Identities = 114/233 (48%), Positives = 159/233 (68%), Gaps = 2/233 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR + R+ ++MRE+ +T+ + EGS L++FG+T ++ AT+EEK+P W+R T GWIT
Sbjct: 1 MRNNNRKNDEMREVKVTKNYIIHPEGSVLIEFGNTKVICNATVEEKIPRWLRGTGSGWIT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEY MLPR+T RV+RE+ G+ GR+ EIQR+IGRALR+ +DL LG R I+IDCDVIQ
Sbjct: 61 AEYSMLPRATNTRVQRESTKGKLSGRTMEIQRLIGRALRATIDLEKLGERTIMIDCDVIQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+ITGA++AL ++ + D ++ +K VAAIS G + ++DL+Y
Sbjct: 121 ADGGTRTASITGAYLALELAIEKLIDERKLKEM--PIKAKVAAISVGKVRNELLLDLEYE 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
EDS DVD N VM D G +E+QG+ E ATF+Q + L+K+ L KL
Sbjct: 179 EDSRADVDMNIVMNDKGEFIELQGTGEEATFTQTELLKFIELSKNAFDKLFKL 231
>gi|189485170|ref|YP_001956111.1| polyribonucleotide nucleotidyltransferase [uncultured Termite group
1 bacterium phylotype Rs-D17]
gi|226704829|sp|B1GZG8|PNP_UNCTG RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|170287129|dbj|BAG13650.1| polyribonucleotide nucleotidyltransferase [uncultured Termite group
1 bacterium phylotype Rs-D17]
Length = 689
Score = 151 bits (382), Expect = 6e-35, Method: Composition-based stats.
Identities = 47/243 (19%), Positives = 87/243 (35%), Gaps = 18/243 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
+R GR ++R I+ V GS L G T L T TL + +V +
Sbjct: 310 IRTDGRGFEEIRPITCETGVLPRVHGSSLFTRGQTQALVTVTLGSPCDMQVIDELIVEYK 369
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y +TG + AVS R+ G +AL+ ++ + I
Sbjct: 370 ERFMLHYNFPGFATGEPKRDRAVSRREIGHGNL----AKKALKHIMPDGEDFGYAVRIVS 425
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
D+++++G + A++ G +AL + ++ + + + + D
Sbjct: 426 DILESNGSSSMASVCGGSLALFNAGVPVKSSCAGVSMGLMKE---------GGSYVILTD 476
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T G I +Q + + + L AK ++
Sbjct: 477 ITGMEDHLGDMDFKVAGTRKG-ITALQMDIKILGLTTEIVAQALEQAKRGRFFILDQMDA 535
Query: 237 VIS 239
V+S
Sbjct: 536 VVS 538
Score = 73.3 bits (178), Expect = 3e-11, Method: Composition-based stats.
Identities = 47/225 (20%), Positives = 79/225 (35%), Gaps = 27/225 (12%)
Query: 16 LTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT----KHGWITAEYGMLPRST 70
+ V+K A GSC V+ G+T +L T ++ + I + T G +P
Sbjct: 17 VESGKVAKQAGGSCTVRIGETVVLVTVVSLKEPKVGIDFMPLTVDYRERTYAAGKIPGGF 76
Query: 71 GNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAI 130
R R + R+I R++R + QI + + AAI
Sbjct: 77 FKR------ETRPRDGEVLVSRLIDRSIRPLFPEYYRNDTQISAVVLSHDGENDSEMAAI 130
Query: 131 TGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDAN 190
GA +AL+ +A++ G + G I++ E D+D
Sbjct: 131 LGASIALYT-------------SDLPFTTPIASVRIGKINGQLIINPLIAEQKLSDLDLV 177
Query: 191 FVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
T+ + V+ A S+ LNLA + + QK
Sbjct: 178 VSGTEE-ALTMVEAGARE--LSEAEMLEALNLAGKTLKGICLFQK 219
>gi|160902045|ref|YP_001567626.1| polynucleotide phosphorylase/polyadenylase [Petrotoga mobilis SJ95]
gi|187610306|sp|A9BH73|PNP_PETMO RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|160359689|gb|ABX31303.1| Polyribonucleotide nucleotidyltransferase [Petrotoga mobilis SJ95]
Length = 695
Score = 151 bits (382), Expect = 6e-35, Method: Composition-based stats.
Identities = 47/241 (19%), Positives = 91/241 (37%), Gaps = 18/241 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHG 57
R+ GR +++R+I+ + GS L G+T L T T L+ +V I + +
Sbjct: 321 RVDGRTCDEIRDITCEVGLIPRVHGSALFTRGETQSLGTVTLGAPLDVQVLDTIFSDEEK 380
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P STG + VS R+ G RA ++++ I + D
Sbjct: 381 RFMLHYNFPPFSTGEVKRLRGVSRREIGHGHL----AERAHKNLIPSDEEFPYTIRVVSD 436
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+++++G + A++ A +AL D ++ + + + + +
Sbjct: 437 ILESNGSSSMASVCSASLALMDAGVPIQKHVAGIAMGLIFENDNFVVLTD---------I 487
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T G I Q + + +++ L AK ++ +
Sbjct: 488 LGMEDHLGDMDFKVAGTRDG-ITAFQMDVKTSQVNKEVLQKALEKAKIARLKILDKMYET 546
Query: 238 I 238
I
Sbjct: 547 I 547
Score = 88.4 bits (217), Expect = 9e-16, Method: Composition-based stats.
Identities = 40/218 (18%), Positives = 73/218 (33%), Gaps = 27/218 (12%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKV----PMWIRNTKHGWITAEYGML 66
R++ + V+K + GS ++ F ++ +L TA E+ + + G +
Sbjct: 11 RKLRIEHGKVAKQSLGSVMLTFNESTILVTADASEETVKGQDFFPLTVEFQEKFYAVGKI 70
Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
P R G+ + R+I R +R + + Q+I +
Sbjct: 71 PGGFIKR------EGKPSDEAILAARLIDRPIRPLFPENFFNEVQVITTVFSMLNGDSIE 124
Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
T ITGA +AL+ G VA + G + G I +
Sbjct: 125 TWGITGASLALN-------------LSPIPFNGIVAGVRIGYVDGQFIAFPTQEQLKNSK 171
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAK 224
+D T + V+ E S++ L A+
Sbjct: 172 IDMVVAGTKD-AVTMVE--GESLEVSEEEMVEALMFAQ 206
>gi|329119666|ref|ZP_08248347.1| tRNA nucleotidyltransferase [Neisseria bacilliformis ATCC BAA-1200]
gi|327464263|gb|EGF10567.1| tRNA nucleotidyltransferase [Neisseria bacilliformis ATCC BAA-1200]
Length = 241
Score = 151 bits (382), Expect = 6e-35, Method: Composition-based stats.
Identities = 112/234 (47%), Positives = 159/234 (67%), Gaps = 2/234 (0%)
Query: 6 RQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGM 65
R + +R + +T +A+GS L++ G+T ++ TA+++E VP ++R GWITAEYGM
Sbjct: 9 RAADALRPVRITPHFLPHADGSALIECGNTRVICTASIDENVPPFLRGQGQGWITAEYGM 68
Query: 66 LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125
LP +T R +REA +G+Q GR+QEIQR+IGR+LR+ DL LG RQI+IDCDVIQADGGT
Sbjct: 69 LPAATATRSRREAAAGKQSGRTQEIQRLIGRSLRAAADLQKLGERQILIDCDVIQADGGT 128
Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185
RTA+ITGA+VAL ++ + S+ L +AA+S G++ G P++DLDY EDS
Sbjct: 129 RTASITGAYVALALAVRKL--LSDGLIAENPLVSQIAAVSAGIVGGVPLLDLDYPEDSGC 186
Query: 186 DVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
D D N VM +G I+E+QG+AE A FS A+L LA+ I +L+ QK ++
Sbjct: 187 DSDVNIVMNGAGGIIEIQGTAEGAPFSPAELAALLRLAQKGIGELMAEQKRALA 240
>gi|28899226|ref|NP_798831.1| polynucleotide phosphorylase/polyadenylase [Vibrio parahaemolyticus
RIMD 2210633]
gi|153838303|ref|ZP_01990970.1| polyribonucleotide nucleotidyltransferase [Vibrio parahaemolyticus
AQ3810]
gi|260362211|ref|ZP_05775195.1| polyribonucleotide nucleotidyltransferase [Vibrio parahaemolyticus
K5030]
gi|260879079|ref|ZP_05891434.1| polyribonucleotide nucleotidyltransferase [Vibrio parahaemolyticus
AN-5034]
gi|260897750|ref|ZP_05906246.1| polyribonucleotide nucleotidyltransferase [Vibrio parahaemolyticus
Peru-466]
gi|260900806|ref|ZP_05909201.1| polyribonucleotide nucleotidyltransferase [Vibrio parahaemolyticus
AQ4037]
gi|81727008|sp|Q87M06|PNP_VIBPA RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|28807450|dbj|BAC60715.1| polyribonucleotide nucleotidyltransferase [Vibrio parahaemolyticus
RIMD 2210633]
gi|149748292|gb|EDM59151.1| polyribonucleotide nucleotidyltransferase [Vibrio parahaemolyticus
AQ3810]
gi|308088979|gb|EFO38674.1| polyribonucleotide nucleotidyltransferase [Vibrio parahaemolyticus
Peru-466]
gi|308089536|gb|EFO39231.1| polyribonucleotide nucleotidyltransferase [Vibrio parahaemolyticus
AN-5034]
gi|308108195|gb|EFO45735.1| polyribonucleotide nucleotidyltransferase [Vibrio parahaemolyticus
AQ4037]
gi|308111467|gb|EFO49007.1| polyribonucleotide nucleotidyltransferase [Vibrio parahaemolyticus
K5030]
Length = 711
Score = 151 bits (382), Expect = 6e-35, Method: Composition-based stats.
Identities = 40/242 (16%), Positives = 91/242 (37%), Gaps = 18/242 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR+++ +R + + V GS L G+T L TATL + ++ + +
Sbjct: 316 RIDGREKDMVRALDVRTGVLPRTHGSALFTRGETQALVTATLGTQRDAQIIDELTGERKD 375
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P G + R+ G + R + +V+ + + +
Sbjct: 376 HFLLHYNFPPYCVGETGFVGSPKRREIGHGKL----AKRGIAAVMPSVDEFPYTVRVVSE 431
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ G +AL D ++ + V +G + +
Sbjct: 432 ITESNGSSSMASVCGTSLALMDAGVPIKASVAGIAMGLVKEGDDFVVLSD---------I 482
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T +G + +Q + +++ LN A+ ++ + +
Sbjct: 483 LGDEDHLGDMDFKVAGTSTG-VTALQMDIKIEGITKEIMQIALNQAQGARKHILSVMDEA 541
Query: 238 IS 239
++
Sbjct: 542 LA 543
Score = 90.7 bits (223), Expect = 2e-16, Method: Composition-based stats.
Identities = 34/228 (14%), Positives = 74/228 (32%), Gaps = 27/228 (11%)
Query: 14 ISLTRRV-SKYAEGSCLVKFGDTHLLTTATLEEKV----PMWIRNTKHGWITAEYGMLPR 68
++L V ++ A + +V DT + + +++ + + T G +P
Sbjct: 17 VTLETGVIARQATAAVMVTMDDTAVFVSVVGKKEAVAGQDFFPLTVNYQERTYAAGKIPG 76
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
R GR R+I R +R + + Q+I + D
Sbjct: 77 GFFKR------EGRPSEGETLTARLIDRPIRPLFPDAFKNEVQVIATVVSVNPDVQPDIP 130
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
+ G A G + A G + G +++ E + +D
Sbjct: 131 TMIGTSAA-------------LAISGIPFNGPIGAARVGHIDGQLVLNPSQTELNASRLD 177
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
T+S ++ V+ +E +++ A + D+ +I +
Sbjct: 178 LVVAGTES-AVLMVE--SEADNLTEEEMLAAVVFGHDQQQVVINAINE 222
>gi|262274879|ref|ZP_06052690.1| polyribonucleotide nucleotidyltransferase [Grimontia hollisae CIP
101886]
gi|262221442|gb|EEY72756.1| polyribonucleotide nucleotidyltransferase [Grimontia hollisae CIP
101886]
Length = 709
Score = 151 bits (382), Expect = 6e-35, Method: Composition-based stats.
Identities = 45/239 (18%), Positives = 90/239 (37%), Gaps = 10/239 (4%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R+ GR+++ +R + + V GS L G+T L TATL + I + G T
Sbjct: 314 RIDGREKDMVRALDVRTGVLPRTHGSALFTRGETQALVTATLGTQRDAQIIDEITGERTD 373
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
+ V G R ++ R + +V+ + + ++ ++
Sbjct: 374 NFLFHYNFPPYCVGETGFVGSPKRREIGHGKLAKRGIAAVMPSQEEFPYTVRVVSEITES 433
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
+G + A++ G+ +AL D ++ + V +G + + E
Sbjct: 434 NGSSSMASVCGSSLALMDAGVPIKKSVAGIAMGLVKEGDDFVVLSD---------ILGDE 484
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
D D+D TD G + +Q + +++ LN AK ++ + IS+
Sbjct: 485 DHLGDMDFKVAGTDDG-VTALQMDIKIEGITKEIMQIALNQAKGARLHILNVMDQAISS 542
Score = 92.6 bits (228), Expect = 4e-17, Method: Composition-based stats.
Identities = 34/228 (14%), Positives = 69/228 (30%), Gaps = 27/228 (11%)
Query: 14 ISLTRRV-SKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKHGWITAEYGMLPR 68
++L V ++ A + +V DT + + + E + + T G +P
Sbjct: 15 VTLETGVMARQATAAVMVSMDDTSVFVSVVGKKDAVEGQDFFPLTVNYQERTYAAGKIPG 74
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
R GR R+I R +R + Q+I + +
Sbjct: 75 GFFKR------EGRPSEGETLTARLIDRPIRPLFPDHFKNEVQVIATVVSVNPNVNPDIV 128
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+ G A G + A G + +++ E +D
Sbjct: 129 AMIGTSAA-------------LSISGIPFNGPIGAARVGYINDELVLNPSNKELEESRLD 175
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
T ++ V+ +E S++ + D+ +I K+
Sbjct: 176 LVVAGT-DNAVLMVE--SEADRLSEEQMLQAVVFGHDQQQVVINAIKE 220
>gi|15834850|ref|NP_296609.1| polynucleotide phosphorylase/polyadenylase [Chlamydia muridarum
Nigg]
gi|270285016|ref|ZP_06194410.1| polynucleotide phosphorylase/polyadenylase [Chlamydia muridarum
Nigg]
gi|270289041|ref|ZP_06195343.1| polynucleotide phosphorylase/polyadenylase [Chlamydia muridarum
Weiss]
gi|301336414|ref|ZP_07224616.1| polynucleotide phosphorylase/polyadenylase [Chlamydia muridarum
MopnTet14]
gi|81548983|sp|Q9PL77|PNP_CHLMU RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|7190270|gb|AAF39102.1| polyribonucleotide nucleotidyltransferase [Chlamydia muridarum
Nigg]
Length = 693
Score = 151 bits (382), Expect = 6e-35, Method: Composition-based stats.
Identities = 45/244 (18%), Positives = 91/244 (37%), Gaps = 18/244 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTH--LLTTATLEEKVPMWIRNTKHG- 57
+R+ GR ++R IS+ GSCL G+T + T E + G
Sbjct: 313 IRVDGRSTTEIRPISIEVSFLPRTHGSCLFTRGETQSVAVCTLGGESMAQRFEDLNGDGA 372
Query: 58 -WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
+Y P S G + + R+ G + +AL V+ ++ + ++
Sbjct: 373 ARFYLQYFFPPFSVGEVGRIGSPGRREIGHGKL----AEKALSHVLPEASRFPYTVRVES 428
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
++ +++G + A++ G ++L D ++ + +L A +
Sbjct: 429 NITESNGSSSMASVCGGCLSLMDAGVPIKAPVAGIAMGLILDQDKAIVLSD--------- 479
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T+ G I Q + + + L AK + ++ L
Sbjct: 480 ISGIEDHLGDMDFKVAGTEEG-ITAFQMDIKVEGITHEIMEQALAQAKQGRSHILNLMTQ 538
Query: 237 VISN 240
V+S+
Sbjct: 539 VMSS 542
Score = 96.1 bits (237), Expect = 3e-18, Method: Composition-based stats.
Identities = 39/235 (16%), Positives = 72/235 (30%), Gaps = 29/235 (12%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLL---TTATLEEKVPMWIRNTKHGWITAEYGMLPRS 69
+ +++ A G+ LVK +T + A+L E V + + G
Sbjct: 16 LIFETGKIARQANGAVLVKMNETWVFSSACAASLSEAVDFLPFRVDYQEKFSSAGKTSGG 75
Query: 70 TGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAA 129
R GR + I R+I R+LR + Q++ A
Sbjct: 76 FLKR------EGRPSEKEILISRLIDRSLRPSFPNRLMQDIQVLSYVWSYDGKTLPDPLA 129
Query: 130 ITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDA 189
I GA A VA + G++ G +V+ E +D
Sbjct: 130 ICGASAA-------------LAISEVPQNCIVAGVRVGLVEGKWVVNPTKDELDASKLDL 176
Query: 190 NFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK---DVISNE 241
T S ++ ++ +++ + + IA + + I E
Sbjct: 177 VMAGTAS-AVLMIE--GHCDFLTEEQVLEAIAFGQKYIAKICDAIEAWQKAIGKE 228
>gi|328474238|gb|EGF45043.1| polynucleotide phosphorylase/polyadenylase [Vibrio parahaemolyticus
10329]
Length = 711
Score = 151 bits (382), Expect = 7e-35, Method: Composition-based stats.
Identities = 40/242 (16%), Positives = 91/242 (37%), Gaps = 18/242 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR+++ +R + + V GS L G+T L TATL + ++ + +
Sbjct: 316 RIDGREKDMVRALDVRTGVLPRTHGSALFTRGETQALVTATLGTQRDAQIIDELTGERKD 375
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P G + R+ G + R + +V+ + + +
Sbjct: 376 HFLLHYNFPPYCVGETGFVGSPKRREIGHGKL----AKRGIAAVMPSVDEFPYTVRVVSE 431
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ G +AL D ++ + V +G + +
Sbjct: 432 ITESNGSSSMASVCGTSLALMDAGVPIKASVAGIAMGLVKEGDDFVVLSD---------I 482
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T +G + +Q + +++ LN A+ ++ + +
Sbjct: 483 LGDEDHLGDMDFKVAGTSTG-VTALQMDIKIEGITKEIMQIALNQAQGARKHILSVMDEA 541
Query: 238 IS 239
++
Sbjct: 542 LA 543
Score = 90.7 bits (223), Expect = 2e-16, Method: Composition-based stats.
Identities = 34/228 (14%), Positives = 74/228 (32%), Gaps = 27/228 (11%)
Query: 14 ISLTRRV-SKYAEGSCLVKFGDTHLLTTATLEEKV----PMWIRNTKHGWITAEYGMLPR 68
++L V ++ A + +V DT + + +++ + + T G +P
Sbjct: 17 VTLETGVIARQATAAVMVTMDDTAVFVSVVGKKEAVAGQDFFPLTVNYQERTYAAGKIPG 76
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
R GR R+I R +R + + Q+I + D
Sbjct: 77 GFFKR------EGRPSEGETLTARLIDRPIRPLFPDAFKNEVQVIATVVSVNPDVQPDIP 130
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
+ G A G + A G + G +++ E + +D
Sbjct: 131 TMIGTSAA-------------LAISGIPFNGPIGAARVGHIDGQLVLNPSQTELNASRLD 177
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
T+S ++ V+ +E +++ A + D+ +I +
Sbjct: 178 LVVAGTES-AVLMVE--SEADNLTEEEMLAAVVFGHDQQQVVINAINE 222
>gi|264677193|ref|YP_003277099.1| 3' exoribonuclease [Comamonas testosteroni CNB-2]
gi|262207705|gb|ACY31803.1| 3' exoribonuclease [Comamonas testosteroni CNB-2]
Length = 747
Score = 151 bits (381), Expect = 7e-35, Method: Composition-based stats.
Identities = 42/243 (17%), Positives = 89/243 (36%), Gaps = 18/243 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +R I + V GS L G+T L +TL + + +
Sbjct: 317 RIDGRDTRTVRPIEIRSSVLPRTHGSALFTRGETQALVISTLGTERDAQKIDALAGEFED 376
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y M P +TG + + R+ G + RAL + + I + +
Sbjct: 377 RFLFHYNMPPFATGEVGRMGSTKRREIGHGRL----AKRALAACLPTKEEFPYTIRVVSE 432
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ G +++ D M+ + + + + A+ +
Sbjct: 433 ITESNGSSSMASVCGGCLSMMDAGVPMKAHVAGIAMGLIKEDNKFAVLTD---------I 483
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T +G I +Q + +++ L AK+ ++ ++
Sbjct: 484 LGDEDHLGDMDFKVAGTTNG-ITALQMDIKIQGITKEIMQVALAQAKEARMHILGKMQEA 542
Query: 238 ISN 240
+
Sbjct: 543 MGE 545
Score = 90.7 bits (223), Expect = 2e-16, Method: Composition-based stats.
Identities = 32/232 (13%), Positives = 71/232 (30%), Gaps = 31/232 (13%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEE----KVPMWIRNTKHGWITAEYGMLPR 68
+++ +++ A G+ LV DT +L T + + + T G +P
Sbjct: 18 VTMETGEIARQASGAVLVNIDDTVVLATVVGSKIAKAGQDFFPLTVDYIEKTYAAGKIPG 77
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
S R + R+I R +R + ++I + + A
Sbjct: 78 SFFKR------EAKPSELETLTSRLIDRPIRPLFPEGFYNDVHVVIHTISLNPEVDADIA 131
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+ A G + A G + G +++ +D
Sbjct: 132 AMIAVSAA-------------LAVSGLPFNGPIGAARVGYINGEYVLNPGQTLRKDSQMD 178
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKD----RIADLIKLQKD 236
T+S ++ V+ +E ++ + + I + L ++
Sbjct: 179 LVVAGTES-AVLMVE--SEALQLPEEVMLGAVVFGHEQGKIAIDAIHDLVRE 227
>gi|332993351|gb|AEF03406.1| polynucleotide phosphorylase/polyadenylase [Alteromonas sp. SN2]
Length = 703
Score = 151 bits (381), Expect = 7e-35, Method: Composition-based stats.
Identities = 38/240 (15%), Positives = 85/240 (35%), Gaps = 10/240 (4%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R+ GR +R + + + GS + G+T + ATL + + + G +
Sbjct: 314 RIDGRDPKMIRALDVATGILPRTHGSAVFTRGETQAIVAATLGTERDAQMIDELQGRRDS 373
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
+ + V + G R R+ R +++V+ + I ++ ++
Sbjct: 374 RFMLHYNFPPYCVGETGMIGSPKRREIGHGRLAKRGIQAVMPSEEEFPYVVRIVSEITES 433
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
+G + A++ G +AL D ++ + V + + E
Sbjct: 434 NGSSSMASVCGTSLALMDAGVPIKASVAGIAMGLVKSDENFVVLSD---------ILGDE 484
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
D D+D T +G I +Q + +++ L AK+ ++ + + I
Sbjct: 485 DHLGDMDFKVAGT-TGGITALQMDIKIEGITKEIMQIALKQAKEARLHILNVMDEAIGGH 543
Score = 94.9 bits (234), Expect = 9e-18, Method: Composition-based stats.
Identities = 38/228 (16%), Positives = 75/228 (32%), Gaps = 27/228 (11%)
Query: 14 ISLTRRV-SKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----HGWITAEYGMLPR 68
++L V ++ A + + DT +L T +++ + T G +P
Sbjct: 15 VTLETGVIARQATAAVMASMDDTAVLVTVVGKKEAKADQDFFPLTVNYQEKTYAAGKIPG 74
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
R GR R+I R +R + Q++I D T
Sbjct: 75 GFFKR------EGRPSEGETLTARLIDRPIRPLFPEGFKNEVQVVITVMSANPDIPTDII 128
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
++ G A G + A G G I++ E + D+D
Sbjct: 129 SMIGTSAA-------------LAISGIPFNGPIGAARVGYTDGEYILNTRVEEQADSDLD 175
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
T+ G ++ V+ +E S+D + +++ ++ K+
Sbjct: 176 LVVAGTE-GAVLMVE--SEADVLSEDVMLGAVMFGHEQLQTVVTAVKE 220
>gi|238897732|ref|YP_002923411.1| RNase PH [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon
pisum)]
gi|259494122|sp|C4K3X0|RNPH_HAMD5 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|229465489|gb|ACQ67263.1| RNase PH [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon
pisum)]
Length = 241
Score = 151 bits (381), Expect = 7e-35, Method: Composition-based stats.
Identities = 126/243 (51%), Positives = 161/243 (66%), Gaps = 5/243 (2%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR SGR Q+R ++ TR +KYAEG+ LV+FG+T +L TAT+EE VP +++ GWIT
Sbjct: 1 MRPSGRTAQQLRPLTFTRHYTKYAEGAVLVEFGETRVLCTATVEEGVPRFLKGQNKGWIT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEY MLPRST R RE+V G+QGGR+ EIQR+I RALR+ VDL+ LG I +DCDV+Q
Sbjct: 61 AEYSMLPRSTHQRHARESVKGKQGGRTLEIQRLIARALRAAVDLTKLGEFTIKLDCDVLQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTAAITGA VAL D LQ M S +KG VAA+S G++ G I DL+Y
Sbjct: 121 ADGGTRTAAITGACVALQDALQKMR--VEGKLKSNPMKGLVAAVSVGVVGGESICDLEYI 178
Query: 181 EDSTIDVDANFVMTDSG---HIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED+ + D N VM + G I+E+QG+AE A FS +L LA D I + + QK V
Sbjct: 179 EDAIAETDMNVVMIEEGAGRKIIEIQGTAEGAPFSHQQLLELLALADDGIKTIFQAQKKV 238
Query: 238 ISN 240
+
Sbjct: 239 LEK 241
>gi|255322462|ref|ZP_05363607.1| polyribonucleotide nucleotidyltransferase [Campylobacter showae
RM3277]
gi|255300370|gb|EET79642.1| polyribonucleotide nucleotidyltransferase [Campylobacter showae
RM3277]
Length = 731
Score = 151 bits (381), Expect = 7e-35, Method: Composition-based stats.
Identities = 46/239 (19%), Positives = 87/239 (36%), Gaps = 14/239 (5%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT--KHGW 58
+R GR+ ++R IS+ + A GSCL G T L ATL + + + G
Sbjct: 341 VRADGRELKEVRPISIETNILPNAHGSCLFTRGQTQALVVATLGTDGDAQMYDMLTEKGA 400
Query: 59 ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDV 118
+T ++ G V + G R + RAL + I + ++
Sbjct: 401 VTDKFMFNYNFPGFSVGEASPLKAPGRRELGHGNLAKRALAPSI--DVNSPYTIRLVSEI 458
Query: 119 IQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLD 178
++++G + A++ G +AL + + +G A+ ++
Sbjct: 459 LESNGSSSMASVCGGSLALRAAGVDTPKLVAGVAMGLIFEGDKHAVLTDIM--------- 509
Query: 179 YGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D + G I +Q + S D L A++ ++ L +
Sbjct: 510 GLEDHDGDMDFKVAGSKDG-ITALQMDIKLGGISLDVLKEALLQAREGRLHILNLMEKA 567
Score = 70.3 bits (170), Expect = 2e-10, Method: Composition-based stats.
Identities = 36/242 (14%), Positives = 75/242 (30%), Gaps = 29/242 (11%)
Query: 20 VSKYAEGSCLVKFGDTHLLTTATLEE---KVPMWIRNTKHGWITAEYGMLPRSTGNRVKR 76
V+K A G+ L++ +T +L T E+ ++ T G +P R
Sbjct: 19 VAKQASGAVLLRVKNTVVLATVAREDTQVSEDFLPLTVQYIEKTYAAGRIPGGYVKR--- 75
Query: 77 EAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVA 136
+ G R+I R+LR + QI++ + + A+ A VA
Sbjct: 76 ---ETKPGDFETLTSRIIDRSLRPLFPKGYAYPTQIVVMVLSCDPEVDLQVVALNAASVA 132
Query: 137 LHDCLQHMEDCSNKFQLSQVLKG-----------------HVAAISCGMLCGYPIVDLDY 179
L+ + ++ + +VA + +L
Sbjct: 133 LYLSDIPVNAPVCGVRVGYIDNKFVINPSNSELKTSALDLYVAGVKDELLMIEMRSIPTE 192
Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
++ + + ++ +Q + FS+D + A I ++ S
Sbjct: 193 KDEIVPIALDPMMDPNLSGVIAMQ---DMNEFSEDLIVEAIAEAGKAILRASNAYEEAFS 249
Query: 240 NE 241
Sbjct: 250 KH 251
>gi|224533452|ref|ZP_03674045.1| polyribonucleotide nucleotidyltransferase [Borrelia burgdorferi
CA-11.2a]
gi|224513414|gb|EEF83772.1| polyribonucleotide nucleotidyltransferase [Borrelia burgdorferi
CA-11.2a]
Length = 722
Score = 151 bits (381), Expect = 7e-35, Method: Composition-based stats.
Identities = 49/244 (20%), Positives = 87/244 (35%), Gaps = 19/244 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
+R GR N++R+I + GS L G+T L TL +E++ I K
Sbjct: 315 IRTDGRTPNEIRDIISEVDILSRTHGSALFTRGETQALAVTTLGTSIDEQIMDDIDGDKR 374
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P S G + R+ G RAL S+V I +
Sbjct: 375 LNFMLHYNFPPFSVGETGRLMTGR-REIGHGHL----AQRALESMVPGKNDFPYTIRVVS 429
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V++++G + A + ++L ++ + + +G +
Sbjct: 430 EVLESNGSSSMATVCAGSMSLMSAGVPVKGQVAGIAMGLISEGDKYVVLSD--------- 480
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T +G I Q + ++D L A+ ++ +
Sbjct: 481 ILGEEDHLGDMDFKVAGTKNG-ITGFQMDIKIENVTKDLMRDALEQARIGRIHILSIMNT 539
Query: 237 VISN 240
VISN
Sbjct: 540 VISN 543
Score = 108 bits (270), Expect = 5e-22, Method: Composition-based stats.
Identities = 45/239 (18%), Positives = 79/239 (33%), Gaps = 32/239 (13%)
Query: 5 GRQENQMREISLTRRV-SKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----HGWI 59
GR E+ +K A GS L +G + +L T V + +
Sbjct: 10 GRD-----ELVFETGFMAKQANGSVLATYGGSSVLATVCCSSNVREDLDFVPLSVEYNEK 64
Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119
G +P R G+ + + R+I R +R + D Q+I
Sbjct: 65 YYAAGKIPGGFIKR------EGKPKDKEILVSRLIDRPMRPLFDKRFGREIQVIPTTLAT 118
Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179
+ A+ A+ G +AA+ L G IV+ +
Sbjct: 119 DQLNPPDIVGMNAAFTAVF-------------LSDIPFNGPIAAVRMVYLNGKFIVNPSF 165
Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
E D+D + +G I V+G A +D + ++ A + I + QK+ +
Sbjct: 166 EEIHDSDLDIVVAGSLNG-ITMVEGGANEVG--EDILLSAIDGAHEYIKQICNAQKEFL 221
>gi|226320852|ref|ZP_03796404.1| polyribonucleotide nucleotidyltransferase [Borrelia burgdorferi
29805]
gi|226233718|gb|EEH32447.1| polyribonucleotide nucleotidyltransferase [Borrelia burgdorferi
29805]
Length = 722
Score = 151 bits (381), Expect = 7e-35, Method: Composition-based stats.
Identities = 49/244 (20%), Positives = 87/244 (35%), Gaps = 19/244 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
+R GR N++R+I + GS L G+T L TL +E++ I K
Sbjct: 315 IRTDGRTPNEIRDIISEVDILSRTHGSALFTRGETQALAVTTLGTSIDEQIMDDIDGDKR 374
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P S G + R+ G RAL S+V I +
Sbjct: 375 LNFMLHYNFPPFSVGETGRLMTGR-REIGHGHL----AQRALESMVPGKNDFPYTIRVVS 429
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V++++G + A + ++L ++ + + +G +
Sbjct: 430 EVLESNGSSSMATVCAGSMSLMSAGVPVKGQVAGIAMGLISEGDKYVVLSD--------- 480
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T +G I Q + ++D L A+ ++ +
Sbjct: 481 ILGEEDHLGDMDFKVAGTKNG-ITGFQMDIKIENVTKDLMRDALEQARIGRIHILSIMNT 539
Query: 237 VISN 240
VISN
Sbjct: 540 VISN 543
Score = 108 bits (270), Expect = 5e-22, Method: Composition-based stats.
Identities = 45/239 (18%), Positives = 79/239 (33%), Gaps = 32/239 (13%)
Query: 5 GRQENQMREISLTRRV-SKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----HGWI 59
GR E+ +K A GS L +G + +L T V + +
Sbjct: 10 GRD-----ELVFETGFMAKQANGSVLATYGGSSVLATVCCSSNVREDLDFVPLSVEYNEK 64
Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119
G +P R G+ + + R+I R +R + D Q+I
Sbjct: 65 YYAAGKIPGGFIKR------EGKPKDKEILVSRLIDRPMRPLFDKRFGREIQVIPTTLAT 118
Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179
+ A+ A+ G +AA+ L G IV+ +
Sbjct: 119 DQLNPPDIVGMNAAFTAVF-------------LSDIPFNGPIAAVRMVYLNGKFIVNPSF 165
Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
E D+D + +G I V+G A +D + ++ A + I + QK+ +
Sbjct: 166 EEIHDSDLDIVVAGSLNG-ITMVEGGANEVG--EDILLSAIDGAHEYIKQICNAQKEFL 221
>gi|315124713|ref|YP_004066717.1| polyribonucleotide nucleotidyltransferase [Campylobacter jejuni
subsp. jejuni ICDCCJ07001]
gi|315018435|gb|ADT66528.1| polyribonucleotide nucleotidyltransferase [Campylobacter jejuni
subsp. jejuni ICDCCJ07001]
Length = 719
Score = 151 bits (381), Expect = 7e-35, Method: Composition-based stats.
Identities = 47/252 (18%), Positives = 88/252 (34%), Gaps = 27/252 (10%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWI------RNTK 55
R GR N++R I++ + A GSCL G T L ATL + + +N
Sbjct: 336 RADGRSLNEVRPINIETNILPNAHGSCLFTRGQTQALVVATLGGENDAQMIDLLTEKNPI 395
Query: 56 HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115
Y S G +A R+ G RAL V I +
Sbjct: 396 SERFMVNYNFPGFSVGEASPIKAPGRRELGHGNL----AKRALYPSV--DENYPYVIRLV 449
Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIV 175
++++++G + A + G +AL + + + + A+ ++
Sbjct: 450 SEILESNGSSSMATVCGGSLALKAAGVPSLKLVAGVAMGLIFEDNKYAVLTDIM------ 503
Query: 176 DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
ED D+D + G + +Q + Q+ L AK+ ++ + +
Sbjct: 504 ---GLEDHDGDMDFKVAGSKDG-VTALQMDIKLGGIDQETLKQALYQAKEGRIHILNIME 559
Query: 236 DV-----ISNEV 242
+ ++ EV
Sbjct: 560 EAAKKIIVNEEV 571
Score = 83.7 bits (205), Expect = 2e-14, Method: Composition-based stats.
Identities = 40/250 (16%), Positives = 76/250 (30%), Gaps = 48/250 (19%)
Query: 20 VSKYAEGSCLVKFGDTHLLTTATLEE---KVPMWIRNTKHGWITAEYGMLPRSTGNRVKR 76
V+K A G+ L++ G + +L T EE + ++ G +P R
Sbjct: 19 VAKQAAGAVLMRQGKSVVLATVAREEKQVEEDFLPLTVQYIEKAYAAGKIPGGYVKR--- 75
Query: 77 EAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVA 136
+ R+I R+LR + QI++ + ++ A VA
Sbjct: 76 ---ETKPSDAETLTARIIDRSLRPLFRKGYAYPTQIVVMVLSADPKVDLQVMSLNAASVA 132
Query: 137 LHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDS 196
L+ +K V + G + G I++ + E +D
Sbjct: 133 LY-------------LSDIPMKAPVCGVRIGKIDGNFILNPNNEELQNSTLDLYVAGVKD 179
Query: 197 GHIVEVQGSA-------------------------ERATFSQDHFFAMLNLAKDRIADLI 231
++ ++ A S+D LNLA+ I +
Sbjct: 180 -ELLMIEMRALPDQKENEIFIEAPYADVLTQTTSQNMNELSEDEILEALNLAQKAILNGS 238
Query: 232 KLQKDVISNE 241
++ S
Sbjct: 239 NAYEEAFSKH 248
>gi|86150855|ref|ZP_01069071.1| polyribonucleotide nucleotidyltransferase [Campylobacter jejuni
subsp. jejuni 260.94]
gi|85842025|gb|EAQ59271.1| polyribonucleotide nucleotidyltransferase [Campylobacter jejuni
subsp. jejuni 260.94]
Length = 719
Score = 151 bits (381), Expect = 7e-35, Method: Composition-based stats.
Identities = 47/252 (18%), Positives = 88/252 (34%), Gaps = 27/252 (10%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWI------RNTK 55
R GR N++R I++ + A GSCL G T L ATL + + +N
Sbjct: 336 RADGRSLNEVRPINIETNILPNAHGSCLFTRGQTQALVVATLGGENDAQMIDLLTEKNPI 395
Query: 56 HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115
Y S G +A R+ G RAL V I +
Sbjct: 396 SERFMVNYNFPGFSVGEASPIKAPGRRELGHGNL----AKRALYPSV--DENYPYVIRLV 449
Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIV 175
++++++G + A + G +AL + + + + A+ ++
Sbjct: 450 SEILESNGSSSMATVCGGSLALKAAGVPSLKLVAGVAMGLIFEDNKYAVLTDIM------ 503
Query: 176 DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
ED D+D + G + +Q + Q+ L AK+ ++ + +
Sbjct: 504 ---GLEDHDGDMDFKVAGSKDG-VTALQMDIKLGGIDQETLKQALYQAKEGRIHILNIME 559
Query: 236 DV-----ISNEV 242
+ ++ EV
Sbjct: 560 EAAKKIIVNEEV 571
Score = 83.7 bits (205), Expect = 2e-14, Method: Composition-based stats.
Identities = 40/250 (16%), Positives = 76/250 (30%), Gaps = 48/250 (19%)
Query: 20 VSKYAEGSCLVKFGDTHLLTTATLEE---KVPMWIRNTKHGWITAEYGMLPRSTGNRVKR 76
V+K A G+ L++ G + +L T EE + ++ G +P R
Sbjct: 19 VAKQAAGAVLMRQGKSVVLATVAREEKQVEEDFLPLTVQYIEKAYAAGKIPGGYVKR--- 75
Query: 77 EAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVA 136
+ R+I R+LR + QI++ + ++ A VA
Sbjct: 76 ---ETKPSDAETLTARIIDRSLRPLFRKGYAYPTQIVVMVLSADPKVDLQVMSLNAASVA 132
Query: 137 LHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDS 196
L+ +K V + G + G I++ + E +D
Sbjct: 133 LY-------------LSDIPMKAPVCGVRIGKIDGNFILNPNNEELQNSTLDLYVAGVKD 179
Query: 197 GHIVEVQGSA-------------------------ERATFSQDHFFAMLNLAKDRIADLI 231
++ ++ A S+D LNLA+ I +
Sbjct: 180 -ELLMIEMRALPDQKENEIFIEAPYADVLTQTTSQNMNELSEDEILEALNLAQKAILNGS 238
Query: 232 KLQKDVISNE 241
++ S
Sbjct: 239 NAYEEAFSKH 248
>gi|328955985|ref|YP_004373318.1| RNAse PH [Coriobacterium glomerans PW2]
gi|328456309|gb|AEB07503.1| RNAse PH [Coriobacterium glomerans PW2]
Length = 246
Score = 151 bits (381), Expect = 7e-35, Method: Composition-based stats.
Identities = 120/236 (50%), Positives = 157/236 (66%), Gaps = 4/236 (1%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R GR +R + L R V K A GSC+V+FGDT +L AT+E+ +P W R ++ GW+TA
Sbjct: 8 RADGRGAGDLRRVRLERDVMKNALGSCMVEFGDTRVLCAATIEDGLPGWRRASRSGWVTA 67
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
EY MLP STG R +RE R GRSQEI+R+IGR+LR+ +L ALG + IDCDVIQA
Sbjct: 68 EYAMLPASTGRRTRREFGQRR--GRSQEIERLIGRSLRTATNLRALGEHTVTIDCDVIQA 125
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
DGGTRTAA+TGAWVALHD L + + ++ V + VAA+S G++ G ++DLDY E
Sbjct: 126 DGGTRTAALTGAWVALHDALAAWVEAARIPRIPLVSQ--VAAVSMGLVDGNVLLDLDYAE 183
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
DS +VD N V T S IVE+QG+ ER F + H A+L+L + I LI LQ +V
Sbjct: 184 DSRAEVDMNLVCTQSREIVEIQGTGERTPFDRAHLDALLDLGFEGIERLIALQNEV 239
>gi|289548545|ref|YP_003473533.1| polyribonucleotide nucleotidyltransferase [Thermocrinis albus DSM
14484]
gi|289182162|gb|ADC89406.1| polyribonucleotide nucleotidyltransferase [Thermocrinis albus DSM
14484]
Length = 704
Score = 151 bits (381), Expect = 7e-35, Method: Composition-based stats.
Identities = 46/244 (18%), Positives = 81/244 (33%), Gaps = 19/244 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWI-----RNTKH 56
R+ GR +R I++ + GS + G T T TL +
Sbjct: 311 RIDGRGPKDIRPITIELHPFERPHGSAIFTRGQTQAFATVTLGAPEEAQMVESIYEGEVF 370
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P STG R+ G RAL ++ I +
Sbjct: 371 KRFMLHYNFPPFSTGEARSWGPPRRREIGHGAL----AERALEPLIPPEEEFPYIIRVVS 426
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
++++++G T A + A +AL D M+ + + +++G I
Sbjct: 427 NILESNGSTSMATVCAASLALFDAGVPMKKHAAGIAMGLIMEGDRYVILSD--------- 477
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T G I VQ + ++ L AK+ +++ +
Sbjct: 478 ILGDEDQLGDMDFKVAGTKDG-ITSVQMDIKVKGLKKEIMREALQQAKEGRLYILQKMYE 536
Query: 237 VISN 240
I
Sbjct: 537 AIPE 540
Score = 104 bits (259), Expect = 1e-20, Method: Composition-based stats.
Identities = 46/235 (19%), Positives = 85/235 (36%), Gaps = 28/235 (11%)
Query: 13 EISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEY----GMLP 67
I + +K A+G+ +V+ GDT +L TA + E+ + E G +P
Sbjct: 13 PIIIETGHYAKQADGAVVVRQGDTAVLVTAVMSEEPQTNVDFVPLTVDYREQSSAWGKIP 72
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R G+ R + R+I R +R + +
Sbjct: 73 GGFIKR------EGKPTDREILVSRVIDRPIRPLFPEGFSHDVVVTALTLSADDKYDPDV 126
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
AITGA ALH +G +A + + G + + Y E D+
Sbjct: 127 LAITGASAALH-------------ISRIPFEGPIAGVRICRVEGRLVANPTYEERQKADL 173
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNEV 242
+ + IV V+G A+ ++ L + I DL++ Q++ + +++
Sbjct: 174 EI-VMAGSKDAIVMVEGGAKE--VDEEVLTEALYFGLEVIQDLLRAQEE-LRDKI 224
>gi|297184037|gb|ADI20157.1| hypothetical protein [uncultured alpha proteobacterium
EB080_L06A09]
Length = 709
Score = 151 bits (381), Expect = 7e-35, Method: Composition-based stats.
Identities = 44/243 (18%), Positives = 89/243 (36%), Gaps = 17/243 (6%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR + +R I V GS L G+T L TL +E++ + T
Sbjct: 318 RIDGRDLSTVRPIISETAVLPRTHGSALFTRGETQALAVTTLGTGDDEQMIDALSGTYRS 377
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + R+ G + RAL++V+ + I + +
Sbjct: 378 NFLLHYNFPPYSVGECGRMMGPGRREIGHGKL----AWRALQAVLPPATEFPYTIRMVSE 433
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ G +++ D + + + + D+
Sbjct: 434 ITESNGSSSMASVCGGSLSMMDAGVPLRAPVAGVAMGLI--------LQDSGEYAVLTDI 485
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T++G I +Q + A + + + AKD ++ +
Sbjct: 486 LGDEDHLGDMDFKVAGTENG-ITSLQMDIKVAGITPEIMEKAMAQAKDGRLHILGEMANA 544
Query: 238 ISN 240
++
Sbjct: 545 LTE 547
Score = 96.5 bits (238), Expect = 3e-18, Method: Composition-based stats.
Identities = 32/228 (14%), Positives = 68/228 (29%), Gaps = 25/228 (10%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVP----MWIRNTKHGWITAEYGMLPR 68
++L +++ A+ + + +G+T +L +K + + G +P
Sbjct: 16 LTLETGKIARQADSTVIATYGETSVLAAVCFAKKEKEGQSFFPLTVNYQEKYYAAGKIPG 75
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
R R + R+I R +R + QI +
Sbjct: 76 GFFKR------EARPTEKETLTARLIDRPIRPLFIPGFKHEVQITLTVLSHDLVNDPDMV 129
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID-- 186
A+ A AL + G P D + + D
Sbjct: 130 AMIAASAALTLSGAPFMG---------PIGNCRVGFEGGQYVLNPTCDDMHELKNNPDQR 180
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
+D T ++ V+ A +++ +N A ++I +I +
Sbjct: 181 LDLVVAGTKD-AVMMVESEAYE--LTEEEMLGAINFAHEQIQPVIDMI 225
>gi|221217569|ref|ZP_03589038.1| polyribonucleotide nucleotidyltransferase
(Polynucleotidephosphorylase) [Borrelia burgdorferi 72a]
gi|225549375|ref|ZP_03770347.1| polyribonucleotide nucleotidyltransferase [Borrelia burgdorferi
94a]
gi|225550249|ref|ZP_03771208.1| polyribonucleotide nucleotidyltransferase [Borrelia burgdorferi
118a]
gi|221192515|gb|EEE18733.1| polyribonucleotide nucleotidyltransferase
(Polynucleotidephosphorylase) [Borrelia burgdorferi 72a]
gi|225369117|gb|EEG98571.1| polyribonucleotide nucleotidyltransferase [Borrelia burgdorferi
118a]
gi|225370003|gb|EEG99444.1| polyribonucleotide nucleotidyltransferase [Borrelia burgdorferi
94a]
Length = 722
Score = 151 bits (381), Expect = 7e-35, Method: Composition-based stats.
Identities = 49/244 (20%), Positives = 87/244 (35%), Gaps = 19/244 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
+R GR N++R+I + GS L G+T L TL +E++ I K
Sbjct: 315 IRTDGRTPNEIRDIISEVDILSRTHGSALFTRGETQALAVTTLGTSIDEQIMDDIDGDKR 374
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P S G + R+ G RAL S+V I +
Sbjct: 375 LNFMLHYNFPPFSVGETGRLMTGR-REIGHGHL----AQRALESMVPGKNDFPYTIRVVS 429
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V++++G + A + ++L ++ + + +G +
Sbjct: 430 EVLESNGSSSMATVCAGSMSLMSAGVPVKGQVAGIAMGLISEGDKYVVLSD--------- 480
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T +G I Q + ++D L A+ ++ +
Sbjct: 481 ILGEEDHLGDMDFKVAGTKNG-ITGFQMDIKIENVTKDLMRDALEQARIGRIHILSIMNT 539
Query: 237 VISN 240
VISN
Sbjct: 540 VISN 543
Score = 108 bits (270), Expect = 6e-22, Method: Composition-based stats.
Identities = 45/239 (18%), Positives = 79/239 (33%), Gaps = 32/239 (13%)
Query: 5 GRQENQMREISLTRRV-SKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----HGWI 59
GR E+ +K A GS L +G + +L T V + +
Sbjct: 10 GRD-----ELVFETGFMAKQANGSVLATYGGSSVLATVCCSSNVREDLDFVPLSVEYNEK 64
Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119
G +P R G+ + + R+I R +R + D Q+I
Sbjct: 65 YYAAGKIPGGFIKR------EGKPKDKEILVSRLIDRPMRPLFDKRFGREIQVIPTTLAT 118
Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179
+ A+ A+ G +AA+ L G IV+ +
Sbjct: 119 DQLNPPDIVGMNAAFTAVF-------------LSDIPFNGPIAAVRMVYLNGKFIVNPSF 165
Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
E D+D + +G I V+G A +D + ++ A + I + QK+ +
Sbjct: 166 EEIHDSDLDIVVAGSLNG-ITMVEGGANEVG--EDILLSAIDGAHEYIKQICNAQKEFL 221
>gi|15595150|ref|NP_212939.1| polynucleotide phosphorylase/polyadenylase [Borrelia burgdorferi
B31]
gi|216264741|ref|ZP_03436733.1| polyribonucleotide nucleotidyltransferase
(Polynucleotidephosphorylase) [Borrelia burgdorferi
156a]
gi|218249358|ref|YP_002375304.1| polyribonucleotide nucleotidyltransferase
(Polynucleotidephosphorylase) [Borrelia burgdorferi ZS7]
gi|223889336|ref|ZP_03623923.1| polyribonucleotide nucleotidyltransferase
(Polynucleotidephosphorylase) [Borrelia burgdorferi 64b]
gi|226321270|ref|ZP_03796798.1| polyribonucleotide nucleotidyltransferase [Borrelia burgdorferi
Bol26]
gi|81343023|sp|O51745|PNP_BORBU RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|226702621|sp|B7J0Q1|PNP_BORBZ RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|2688743|gb|AAC67149.1| polyribonucleotide nucleotidyltransferase (pnpA) [Borrelia
burgdorferi B31]
gi|215981214|gb|EEC22021.1| polyribonucleotide nucleotidyltransferase
(Polynucleotidephosphorylase) [Borrelia burgdorferi
156a]
gi|218164546|gb|ACK74607.1| polyribonucleotide nucleotidyltransferase
(Polynucleotidephosphorylase) [Borrelia burgdorferi ZS7]
gi|223885257|gb|EEF56360.1| polyribonucleotide nucleotidyltransferase
(Polynucleotidephosphorylase) [Borrelia burgdorferi 64b]
gi|226233302|gb|EEH32053.1| polyribonucleotide nucleotidyltransferase [Borrelia burgdorferi
Bol26]
Length = 722
Score = 151 bits (381), Expect = 7e-35, Method: Composition-based stats.
Identities = 49/244 (20%), Positives = 87/244 (35%), Gaps = 19/244 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
+R GR N++R+I + GS L G+T L TL +E++ I K
Sbjct: 315 IRTDGRTPNEIRDIISEVDILSRTHGSALFTRGETQALAVTTLGTSIDEQIMDDIDGDKR 374
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P S G + R+ G RAL S+V I +
Sbjct: 375 LNFMLHYNFPPFSVGETGRLMTGR-REIGHGHL----AQRALESMVPGKNDFPYTIRVVS 429
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V++++G + A + ++L ++ + + +G +
Sbjct: 430 EVLESNGSSSMATVCAGSMSLMSAGVPVKGQVAGIAMGLISEGDKYVVLSD--------- 480
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T +G I Q + ++D L A+ ++ +
Sbjct: 481 ILGEEDHLGDMDFKVAGTKNG-ITGFQMDIKIENVTKDLMRDALEQARIGRIHILSIMNT 539
Query: 237 VISN 240
VISN
Sbjct: 540 VISN 543
Score = 108 bits (270), Expect = 6e-22, Method: Composition-based stats.
Identities = 45/239 (18%), Positives = 79/239 (33%), Gaps = 32/239 (13%)
Query: 5 GRQENQMREISLTRRV-SKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----HGWI 59
GR E+ +K A GS L +G + +L T V + +
Sbjct: 10 GRD-----ELVFETGFMAKQANGSVLATYGGSSVLATVCCSSNVREDLDFVPLSVEYNEK 64
Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119
G +P R G+ + + R+I R +R + D Q+I
Sbjct: 65 YYAAGKIPGGFIKR------EGKPKDKEILVSRLIDRPMRPLFDKRFGREIQVIPTTLAT 118
Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179
+ A+ A+ G +AA+ L G IV+ +
Sbjct: 119 DQLNPPDIVGMNAAFTAVF-------------LSDIPFNGPIAAVRMVYLNGKFIVNPSF 165
Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
E D+D + +G I V+G A +D + ++ A + I + QK+ +
Sbjct: 166 EEIHDSDLDIVVAGSLNG-ITMVEGGANEVG--EDILLSAIDGAHEYIKQICNAQKEFL 221
>gi|261407930|ref|YP_003244171.1| polyribonucleotide nucleotidyltransferase [Paenibacillus sp.
Y412MC10]
gi|261284393|gb|ACX66364.1| polyribonucleotide nucleotidyltransferase [Paenibacillus sp.
Y412MC10]
Length = 701
Score = 151 bits (381), Expect = 8e-35, Method: Composition-based stats.
Identities = 46/242 (19%), Positives = 82/242 (33%), Gaps = 18/242 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56
+R GR +++R I + GS L G T L+ T + ++ I +
Sbjct: 313 VRPDGRGLSEIRPIDCDTSLLPRTHGSGLFTRGQTQALSVCTLGALGDVQILDGIDLEET 372
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P S G A R+ G RAL V+ I +
Sbjct: 373 KRFMHHYNFPPFSVGEARPLRAPGRREIGHGALG----ERALSKVIPNEVDFPYTIRLVS 428
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+VI+++G T A+I + +A+ D ++ + + G +I
Sbjct: 429 EVIESNGSTSQASICASTLAMMDAGVPIKAPVAGVAMGLIKDGDHVSILTD--------- 479
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T G + +Q + + L AK+ ++ +
Sbjct: 480 IQGMEDHLGDMDFKVAGTPDG-VTAIQMDIKIDGIDRAILQEALQQAKEGRMHILGKMAE 538
Query: 237 VI 238
I
Sbjct: 539 AI 540
Score = 111 bits (277), Expect = 8e-23, Method: Composition-based stats.
Identities = 35/232 (15%), Positives = 79/232 (34%), Gaps = 26/232 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATL---EEKVPMWIRNTKHGWITAEYGMLP 67
R + ++K A + +V++G+T +L T T + + + + G +P
Sbjct: 12 RPLVFETGRLAKQANAAVMVRYGETAVLCTVTASSEPKDLDFFPLTVNYEERLYAVGKIP 71
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R GR ++ R+ R +R + Q++ + D
Sbjct: 72 GGFIKR------EGRPSEKAILASRLTDRPIRPLFPEGFRNDVQVLNLVMSVDQDCEPEI 125
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
AA+ G A G + ++ G + G +V+ + E D+
Sbjct: 126 AAMIGTSAA-------------LSISDVPFNGPIGGVAVGRVDGNFVVNPNIAEQEASDI 172
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
T I+ V+ AE ++ + + I ++ +++++
Sbjct: 173 YLVVAGTKD-AIMMVE--AEANEVPEEVMLEAIMFGHEEIKKIVAKIEELVA 221
>gi|90022349|ref|YP_528176.1| polynucleotide phosphorylase/polyadenylase [Saccharophagus
degradans 2-40]
gi|122996024|sp|Q21H65|PNP_SACD2 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|89951949|gb|ABD81964.1| Polyribonucleotide nucleotidyltransferase [Saccharophagus degradans
2-40]
Length = 722
Score = 151 bits (381), Expect = 8e-35, Method: Composition-based stats.
Identities = 43/243 (17%), Positives = 89/243 (36%), Gaps = 18/243 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +R + + V GS L G+T L +TL + ++ + +
Sbjct: 327 RIDGRDSKTVRPLHVEVGVLPKVHGSALFTRGETQALVVSTLGSARDAQIIDALEGERKD 386
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + A R+ G + R + +V+ + + +
Sbjct: 387 PFMLHYNFPPYSVGECGRMGATGRREIGHGRL----ARRGIGAVLPKEEDFPYTMRVVSE 442
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ GA +AL D ++ + V + + A+ +
Sbjct: 443 ITESNGSSSMASVCGASLALMDAGVPLKAPVAGIAMGLVKEDNGFAVLTD---------I 493
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T G + +Q + +++ L A D ++ V
Sbjct: 494 LGDEDHLGDMDFKVAGTADG-VTALQMDIKIEGITEEIMEIALGQAMDARLHILAEMNRV 552
Query: 238 ISN 240
I++
Sbjct: 553 IAS 555
Score = 105 bits (261), Expect = 6e-21, Method: Composition-based stats.
Identities = 33/229 (14%), Positives = 69/229 (30%), Gaps = 28/229 (12%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT----KHGWITAEYGMLPR 68
++L +++ A G+ L G T +L T ++ + G +P
Sbjct: 27 VTLETGRIARQASGAVLASMGQTSVLVAVTGSKEAKPGQDFFPLSVHYQEKAYAAGKIPG 86
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
R R + R+I R +R + L Q++ + D
Sbjct: 87 GFFKR------EARPSEKETLTSRLIDRPIRPLFPNGFLNEVQVVCTVISAEKDVDPDIV 140
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY-PIVDLDYGEDSTIDV 187
A+ G A G + A G +++ Y T ++
Sbjct: 141 AMIGTSAA-------------LAISGIPFNGPIGAARVGYTQESGYLLNPTYSTLKTSEL 187
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
D T ++ V+ A+ +D + A + +++ +
Sbjct: 188 DMVVAGTAD-AVLMVESEAKE--LPEDIMLGAVLYAHQEMQAVVQAVAE 233
>gi|167630367|ref|YP_001680866.1| polyribonucleotide nucleotidyltransferase [Heliobacterium
modesticaldum Ice1]
gi|257096694|sp|B0THS2|PNP_HELMI RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|167593107|gb|ABZ84855.1| polyribonucleotide nucleotidyltransferase [Heliobacterium
modesticaldum Ice1]
Length = 709
Score = 151 bits (381), Expect = 8e-35, Method: Composition-based stats.
Identities = 43/241 (17%), Positives = 86/241 (35%), Gaps = 18/241 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R GR+ +++R IS+ + GS L G T +L TL + ++ + +
Sbjct: 311 RPDGRKMDEIRPISVEVGILPRTHGSGLFTRGQTQVLNVCTLGTIADLQILDGLGVEESK 370
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G R+ G RAL V+ I + +
Sbjct: 371 RYMHHYNFPPYSVGETRPMRGPGRREIGHGAL----AERALLPVIPSEDEFPYTIRLVSE 426
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
++++G T A++ G+ ++L + ++ + + +G +I +
Sbjct: 427 AVESNGSTSMASVCGSTLSLMNAGVPIKKPVAGIAMGLIKEGEHFSILSD---------I 477
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T G + +Q + +++ L A+ ++ V
Sbjct: 478 QGMEDHLGDMDFKVAGTADG-VTALQMDIKIKGVNREILTQALQQARKGRLFILDKMLAV 536
Query: 238 I 238
I
Sbjct: 537 I 537
Score = 120 bits (301), Expect = 2e-25, Method: Composition-based stats.
Identities = 38/233 (16%), Positives = 80/233 (34%), Gaps = 27/233 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT----KHGWITAEYGML 66
R +++ V+K A GS L ++GDT +L TAT ++ I + G +
Sbjct: 11 RTLTIETGRVAKQAGGSVLARYGDTVVLVTATGSKEPRPGIDFFPLTVDYEERLYAVGKI 70
Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
P R GR ++ R+I R +R + Q++ + D
Sbjct: 71 PGGFIKR------EGRPTEKAILSARLIDRPIRPLFPKGFRNDVQVVATVMSVDQDCPPD 124
Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
+ GA A +G + + G + G +++ + D
Sbjct: 125 IVGMIGASCA-------------LSLSDIPFEGPIGGVLVGRVDGKLLINPTMEQAEKSD 171
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
+ T ++ V+ A ++ + I ++ Q+++++
Sbjct: 172 MHLVVAGTKD-AVMMVEAGANEVP--EEDMIEAIMFGHQEIQRIVAFQEEMVA 221
>gi|58584280|ref|YP_197853.1| polynucleotide phosphorylase/polyadenylase [Wolbachia endosymbiont
strain TRS of Brugia malayi]
gi|75498164|sp|Q5GTR3|PNP_WOLTR RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|58418596|gb|AAW70611.1| Polyribonucleotide nucleotidyltransferase, pnp [Wolbachia
endosymbiont strain TRS of Brugia malayi]
Length = 755
Score = 151 bits (381), Expect = 8e-35, Method: Composition-based stats.
Identities = 45/244 (18%), Positives = 88/244 (36%), Gaps = 18/244 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTT----ATLEEKVPMWIRNTKHG 57
R+ GR+ +++R+I + + GS L G T L T +E++ I +
Sbjct: 311 RIDGRKYDEIRQIEVEVDILSRTHGSALFTRGSTQALVVTALGTTQDEQIVDDIEGDRRE 370
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y + G+ A R+ G + +A+ V+ + I + +
Sbjct: 371 HFMLHYNFPSFAVGDASAIRAPGRREIGHGKL----AWKAIHPVLPDKSEFPYTIRVVSE 426
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
++++DG + A + G +AL D ++ + + + I +
Sbjct: 427 IMESDGSSSMATVCGTSLALMDTGVPIKSPVAGIAMGLIKDKNDYVILSD---------I 477
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T G I +Q + + S + L AK +++ V
Sbjct: 478 LGDEDYLGDMDFKVAGTSEG-ITALQMDMKISGISFEIVEKSLEQAKAGRLHILEKMNSV 536
Query: 238 ISNE 241
IS
Sbjct: 537 ISEH 540
Score = 101 bits (250), Expect = 1e-19, Method: Composition-based stats.
Identities = 44/229 (19%), Positives = 79/229 (34%), Gaps = 25/229 (10%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTAT---LEEKVPMWIRNTKHGWITAEYGMLP 67
R +SL +++ A+GS +V +GDT +L T EE V N + + G +P
Sbjct: 14 RTLSLETGKIARQADGSVVVNYGDTSILVTVVRKKKEEIVDFLPLNVQFIAKSYAMGRIP 73
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R G+ R I R+I R++R + I+ +
Sbjct: 74 GGFFKR------EGKPSDRETLISRVIDRSIRPLFLEGFHDEISIVCNLLTYDTVNPPEV 127
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
A+ GA AL + I++ E +
Sbjct: 128 PALIGAVAALAISGVPFHFIIAGVLV------------GCDGNNNYILNPSVQEMKVSSL 175
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
D F+ D I+ V+ A+ +++ + + + +IKL K+
Sbjct: 176 DL-FLSGDERSILMVESEAKE--LPEENILNAIKFGHEHLQPVIKLIKE 221
>gi|301063439|ref|ZP_07203971.1| polyribonucleotide nucleotidyltransferase [delta proteobacterium
NaphS2]
gi|300442378|gb|EFK06611.1| polyribonucleotide nucleotidyltransferase [delta proteobacterium
NaphS2]
Length = 697
Score = 151 bits (381), Expect = 8e-35, Method: Composition-based stats.
Identities = 46/243 (18%), Positives = 87/243 (35%), Gaps = 18/243 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR N++R I + GS L G+T + TL + + I +
Sbjct: 312 RIDGRAFNEVRPIECLVGLLPRIHGSALFTRGETQAMVLTTLGTERDRQRIESIFGEELR 371
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + R+ G RAL V+ I + +
Sbjct: 372 SFILHYNFPPYSVGEAKRLSGPGRREIGHGAL----ARRALLPVLPSEEDFQYCIRVVSE 427
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+++++G + A++ G ++L D ++D + V +G + +
Sbjct: 428 ILESNGSSSMASVCGGCLSLMDAGVPIKDLVAGVAMGLVAEGDNVVVLTD---------I 478
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T G I +Q + +++ L AK+ ++ K+
Sbjct: 479 LGDEDHYGDMDFKVTGTSEG-ITALQMDIKIERLTREIMEQALEQAKEGRLHILGCMKET 537
Query: 238 ISN 240
I+
Sbjct: 538 IAQ 540
Score = 108 bits (268), Expect = 9e-22, Method: Composition-based stats.
Identities = 45/232 (19%), Positives = 77/232 (33%), Gaps = 19/232 (8%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRST 70
R I + ++K A GS +V G+T +L TA + V I E
Sbjct: 11 RNIHVETGRIAKQANGSVVVTSGETVVLVTAVATDDVREGIDFLPLTVEYQEMSYAGGQI 70
Query: 71 GNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAI 130
GR G + I R+I R LR + + Q+I + A+
Sbjct: 71 PG-NFFRRDMGRPGEKETLISRLIDRPLRPLFPDNYHYETQVIATVLSTDKENEADMLAM 129
Query: 131 TGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDAN 190
GA A +G +A + G + G + + + D++
Sbjct: 130 LGASAA-------------LEISDIPFQGPIAGVKVGRIDGEFVANPTISQQEESDINLI 176
Query: 191 FVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNEV 242
G IV V+G + S+ + I ++ +Q + + EV
Sbjct: 177 VAGNRDG-IVMVEGGSR--FVSESDMIDAIFYGHQAIQPMLDVQ-ESLKKEV 224
>gi|225551703|ref|ZP_03772647.1| polyribonucleotide nucleotidyltransferase [Borrelia sp. SV1]
gi|225371730|gb|EEH01156.1| polyribonucleotide nucleotidyltransferase [Borrelia sp. SV1]
Length = 722
Score = 151 bits (381), Expect = 8e-35, Method: Composition-based stats.
Identities = 49/244 (20%), Positives = 87/244 (35%), Gaps = 19/244 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
+R GR N++R+I + GS L G+T L TL +E++ I K
Sbjct: 315 IRTDGRTPNEIRDIISEVDILSRTHGSALFTRGETQALAVTTLGTSIDEQIMDDIDGDKR 374
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P S G + R+ G RAL S+V I +
Sbjct: 375 LNFMLHYNFPPFSVGETGRLMTGR-REIGHGHL----AQRALESMVPGKNDFPYTIRVVS 429
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V++++G + A + ++L ++ + + +G +
Sbjct: 430 EVLESNGSSSMATVCAGSMSLMSAGVPVKGQVAGIAMGLISEGDKYVVLSD--------- 480
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T +G I Q + ++D L A+ ++ +
Sbjct: 481 ILGEEDHLGDMDFKVAGTKNG-ITGFQMDIKIENVTKDLMRDALEQARIGRIHILSIMNT 539
Query: 237 VISN 240
VISN
Sbjct: 540 VISN 543
Score = 109 bits (273), Expect = 3e-22, Method: Composition-based stats.
Identities = 46/239 (19%), Positives = 80/239 (33%), Gaps = 32/239 (13%)
Query: 5 GRQENQMREISLTRRV-SKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----HGWI 59
GR E+ +K A GS L +G + +L T V + +
Sbjct: 10 GRD-----ELVFETGFMAKQANGSVLATYGGSSVLATVCCSSNVREDLDFVPFSVEYNEK 64
Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119
G +P R G+ + + R+I R +R + D Q+I
Sbjct: 65 YYAAGKIPGGFIKR------EGKPKDKEILVSRLIDRPMRPLFDKRFGREIQVIPTTLAT 118
Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179
+ A+ A+ G +AA+ L G IV+ +
Sbjct: 119 DQLNPPDIVGMNAAFTAVF-------------LSDIPFNGPIAAVRMVYLNGKFIVNPSF 165
Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
E D+D + +G I V+G A S+D + ++ A + I + QK+ +
Sbjct: 166 EEIHDSDLDIVVAGSLNG-ITMVEGGANE--VSEDILLSAIDGAHEYIKQICNAQKEFL 221
>gi|195941985|ref|ZP_03087367.1| polynucleotide phosphorylase/polyadenylase [Borrelia burgdorferi
80a]
gi|312147830|gb|ADQ30489.1| polyribonucleotide nucleotidyltransferase [Borrelia burgdorferi
JD1]
Length = 716
Score = 151 bits (381), Expect = 8e-35, Method: Composition-based stats.
Identities = 49/244 (20%), Positives = 87/244 (35%), Gaps = 19/244 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
+R GR N++R+I + GS L G+T L TL +E++ I K
Sbjct: 309 IRTDGRTPNEIRDIISEVDILSRTHGSALFTRGETQALAVTTLGTSIDEQIMDDIDGDKR 368
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P S G + R+ G RAL S+V I +
Sbjct: 369 LNFMLHYNFPPFSVGETGRLMTGR-REIGHGHL----AQRALESMVPGKNDFPYTIRVVS 423
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V++++G + A + ++L ++ + + +G +
Sbjct: 424 EVLESNGSSSMATVCAGSMSLMSAGVPVKGQVAGIAMGLISEGDKYVVLSD--------- 474
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T +G I Q + ++D L A+ ++ +
Sbjct: 475 ILGEEDHLGDMDFKVAGTKNG-ITGFQMDIKIENVTKDLMRDALEQARIGRIHILSIMNT 533
Query: 237 VISN 240
VISN
Sbjct: 534 VISN 537
Score = 108 bits (270), Expect = 6e-22, Method: Composition-based stats.
Identities = 45/239 (18%), Positives = 79/239 (33%), Gaps = 32/239 (13%)
Query: 5 GRQENQMREISLTRRV-SKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----HGWI 59
GR E+ +K A GS L +G + +L T V + +
Sbjct: 4 GRD-----ELVFETGFMAKQANGSVLATYGGSSVLATVCCSSNVREDLDFVPLSVEYNEK 58
Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119
G +P R G+ + + R+I R +R + D Q+I
Sbjct: 59 YYAAGKIPGGFIKR------EGKPKDKEILVSRLIDRPMRPLFDKRFGREIQVIPTTLAT 112
Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179
+ A+ A+ G +AA+ L G IV+ +
Sbjct: 113 DQLNPPDIVGMNAAFTAVF-------------LSDIPFNGPIAAVRMVYLNGKFIVNPSF 159
Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
E D+D + +G I V+G A +D + ++ A + I + QK+ +
Sbjct: 160 EEIHDSDLDIVVAGSLNG-ITMVEGGANEVG--EDILLSAIDGAHEYIKQICNAQKEFL 215
>gi|114778695|ref|ZP_01453507.1| polyribonucleotide nucleotidyltransferase [Mariprofundus
ferrooxydans PV-1]
gi|114551057|gb|EAU53619.1| polyribonucleotide nucleotidyltransferase [Mariprofundus
ferrooxydans PV-1]
Length = 705
Score = 151 bits (381), Expect = 8e-35, Method: Composition-based stats.
Identities = 44/242 (18%), Positives = 81/242 (33%), Gaps = 18/242 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWI----RNTKHG 57
R+ GR NQ+R I V GS L G+T L T TL + M +
Sbjct: 326 RIDGRATNQVRAIDCQVGVLPRTHGSALFTRGETQALVTITLGTESDMQMTESLEGVAKQ 385
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + R+ G + R + +V+ I +
Sbjct: 386 RFMLHYNFPPYSVGEARRFGPPGRREIGHGRL----ARRGVEAVLPSMEKFGYAIRSVSE 441
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ G +AL D ++ + +L+ A+ +
Sbjct: 442 ITESNGSSSMASVCGTSLALMDAGVPVKAAVAGVAMGLILEQDGYAVLTD---------I 492
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T G + +Q + +++ L A ++
Sbjct: 493 LGDEDHLGDMDFKVAGTREG-VTTLQLDIKIGGLTREIMQEALAQAHAGRMHILDEMAKC 551
Query: 238 IS 239
+
Sbjct: 552 ME 553
Score = 105 bits (261), Expect = 6e-21, Method: Composition-based stats.
Identities = 35/229 (15%), Positives = 72/229 (31%), Gaps = 19/229 (8%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRST 70
R IS V++ A GS L + GD + AT ++ + E
Sbjct: 22 RTISFETGRVARQAGGSILAQVGDVVVHVAATCAKQPLQGVDFMPLTVHYQEKTYAAGRF 81
Query: 71 GNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAI 130
GR + R+I R +R + Q+I + AI
Sbjct: 82 L--GGFFKREGRPSEKETLTSRLIDRPIRPLFPKGYFHETQVIATVMSVDEGTNPDIVAI 139
Query: 131 TGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDAN 190
G A +AA G++ G I++ Y + + +D
Sbjct: 140 NGVSAA-------------LAISDIPFAEPIAASRVGLIDGEFILNPSYEQVAESSLDLI 186
Query: 191 FVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
T ++ ++ A+ S++ ++ + ++ ++++
Sbjct: 187 VAGTRD-AVLMIESEAKE--LSEEQMIDAISFGQAGYQPVLDAIEELVK 232
>gi|299530738|ref|ZP_07044153.1| polynucleotide phosphorylase/polyadenylase [Comamonas testosteroni
S44]
gi|298721254|gb|EFI62196.1| polynucleotide phosphorylase/polyadenylase [Comamonas testosteroni
S44]
Length = 747
Score = 151 bits (381), Expect = 8e-35, Method: Composition-based stats.
Identities = 42/243 (17%), Positives = 89/243 (36%), Gaps = 18/243 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +R I + V GS L G+T L +TL + + +
Sbjct: 317 RIDGRDTRTVRPIEIRSSVLPRTHGSALFTRGETQALVISTLGTERDAQKIDALAGEFED 376
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y M P +TG + + R+ G + RAL + + I + +
Sbjct: 377 RFLFHYNMPPFATGEVGRMGSTKRREIGHGRL----AKRALAACLPTKEEFPYTIRVVSE 432
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ G +++ D M+ + + + + A+ +
Sbjct: 433 ITESNGSSSMASVCGGCLSMMDAGVPMKAHVAGIAMGLIKEDNKFAVLTD---------I 483
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T +G I +Q + +++ L AK+ ++ ++
Sbjct: 484 LGDEDHLGDMDFKVAGTTNG-ITALQMDIKIQGITKEIMQVALAQAKEARMHILGKMQEA 542
Query: 238 ISN 240
+
Sbjct: 543 MGE 545
Score = 89.9 bits (221), Expect = 3e-16, Method: Composition-based stats.
Identities = 32/232 (13%), Positives = 72/232 (31%), Gaps = 31/232 (13%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEE----KVPMWIRNTKHGWITAEYGMLPR 68
+++ +++ A G+ LV DT +L T + + + T G +P
Sbjct: 18 VTMETGEIARQASGAVLVNIDDTVVLATVVGSKIAKAGQDFFPLTVDYIEKTYAAGKIPG 77
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
S R + R+I R +R + ++I + + A
Sbjct: 78 SFFKR------EAKPSELETLTSRLIDRPIRPLFPEGFYNDVHVVIHTISLNPEVDADIA 131
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+ A G + A G + G +++ + +D
Sbjct: 132 AMIATSAA-------------LAVSGIPFSGPIGAARVGYINGEYVLNPGQTQRKDSQMD 178
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKD----RIADLIKLQKD 236
T+S ++ V+ A + ++ + + I + L ++
Sbjct: 179 LVVAGTES-AVLMVESEALQ--LPEEVMLGAVVFGHEQGKIAIDAIHDLVRE 227
>gi|332307057|ref|YP_004434908.1| polyribonucleotide nucleotidyltransferase [Glaciecola agarilytica
4H-3-7+YE-5]
gi|332174386|gb|AEE23640.1| polyribonucleotide nucleotidyltransferase [Glaciecola agarilytica
4H-3-7+YE-5]
Length = 703
Score = 151 bits (381), Expect = 8e-35, Method: Composition-based stats.
Identities = 40/244 (16%), Positives = 84/244 (34%), Gaps = 18/244 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +R + + + GS L G+T + ATL + ++ + +
Sbjct: 314 RIDGRDPAMIRALDVATGILPRTHGSALFTRGETQAIVAATLGTERDAQMIDGLNGKEDS 373
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P G + R+ G + R +++V+ + + +
Sbjct: 374 RFMLHYNFPPYCVGETGFVGSPKRREIGHGRL----AKRGIQAVMPSEKEFPYVVRVVSE 429
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ G +AL D ++ + V + +
Sbjct: 430 ITESNGSSSMASVCGTSLALMDAGVPIKASVAGIAMGLVKNDENFVVLSD---------I 480
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T G I +Q + +Q+ L AK+ ++ +
Sbjct: 481 LGDEDHLGDMDFKVAGTTEG-ITALQMDIKIEGITQEIMQVALKQAKEARLHILGVMDQA 539
Query: 238 ISNE 241
IS
Sbjct: 540 ISGH 543
Score = 93.0 bits (229), Expect = 3e-17, Method: Composition-based stats.
Identities = 37/228 (16%), Positives = 72/228 (31%), Gaps = 27/228 (11%)
Query: 14 ISLTRRV-SKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----HGWITAEYGMLPR 68
++L V ++ A + + DT +L + ++ + T G +P
Sbjct: 15 VTLETGVIARQATAAVMASMDDTSVLVSVVGKKDTKPGQDFFPLTVNYQERTYAAGKIPG 74
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
R GR R+I R +R + + QII+ + T
Sbjct: 75 GFFKR------EGRPSEYETLTSRLIDRPIRPLFPDGFMNEVQIIVTVVSANPEIPTDII 128
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
++ G A G V A G G +++ E T +D
Sbjct: 129 SLIGTSAA-------------LAISGMPFNGPVGAARVGYTDGQYVLNTRTSELETSQLD 175
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
T G ++ V+ AE S+D + +++ ++ +
Sbjct: 176 LVVAGTK-GAVLMVESEAE--VLSEDVMLGAVMYGHEQMQTVVNAVTE 220
>gi|218710441|ref|YP_002418062.1| polynucleotide phosphorylase/polyadenylase [Vibrio splendidus
LGP32]
gi|254782746|sp|B7VJH3|PNP_VIBSL RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|218323460|emb|CAV19637.1| polyribonucleotide nucleotidyltransferase [Vibrio splendidus LGP32]
Length = 706
Score = 151 bits (381), Expect = 8e-35, Method: Composition-based stats.
Identities = 44/242 (18%), Positives = 93/242 (38%), Gaps = 18/242 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR+++ +R + + V GS L G+T L TATL + ++ + K
Sbjct: 316 RIDGREKDMVRALDVRTGVLPRTHGSSLFTRGETQALVTATLGTQRDAQIIDSLMGEKKD 375
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P G + R+ G + R +++V+ + + +
Sbjct: 376 NFLLHYNFPPYCVGETGFVGSPKRREIGHGKL----AKRGIQAVMPSVDEFPYTVRVVSE 431
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ G +AL D ++ + V +G + +
Sbjct: 432 ITESNGSSSMASVCGTSLALMDAGVPIKASVAGIAMGLVKEGDDFVVLSD---------I 482
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T++G I +Q + +++ LN A+ ++ + +
Sbjct: 483 LGDEDHLGDMDFKVAGTNAG-ITALQMDIKIEGITKEIMQIALNQAQGARKHILSVMDEA 541
Query: 238 IS 239
IS
Sbjct: 542 IS 543
Score = 88.0 bits (216), Expect = 1e-15, Method: Composition-based stats.
Identities = 34/228 (14%), Positives = 72/228 (31%), Gaps = 27/228 (11%)
Query: 14 ISLTRRV-SKYAEGSCLVKFGDTHLLTTATLEEKV----PMWIRNTKHGWITAEYGMLPR 68
++L V ++ A + + DT + + +++ + + T G +P
Sbjct: 17 VTLETGVMARQATAAVMATMDDTSVFVSVVAKKEAVAGQDFFPLTVNYQERTYAAGKIPG 76
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
R GR R+I R +R + + Q+I I D
Sbjct: 77 GFFKR------EGRPSEGETLTARLIDRPIRPLFPSAFKNEVQVIATVVSINPDVNPDMI 130
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
+ A G + A G + G +++ E +D
Sbjct: 131 TMIATSAA-------------LAISGAPFNGPIGAARVGHIDGELVLNPSNTELENSKLD 177
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
T+ G ++ V+ +E S++ + + D+ +IK +
Sbjct: 178 LVVSGTE-GAVLMVE--SEADNLSEEEMLSAVVYGHDQQQVVIKAINE 222
>gi|329929308|ref|ZP_08283061.1| polyribonucleotide nucleotidyltransferase [Paenibacillus sp. HGF5]
gi|328936677|gb|EGG33120.1| polyribonucleotide nucleotidyltransferase [Paenibacillus sp. HGF5]
Length = 701
Score = 151 bits (381), Expect = 8e-35, Method: Composition-based stats.
Identities = 46/242 (19%), Positives = 82/242 (33%), Gaps = 18/242 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56
+R GR +++R I + GS L G T L+ T + ++ I +
Sbjct: 313 VRPDGRGLSEIRPIDCDTSLLPRTHGSGLFTRGQTQALSVCTLGALGDVQILDGIDLEET 372
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P S G A R+ G RAL V+ I +
Sbjct: 373 KRFMHHYNFPPFSVGEARPLRAPGRREIGHGALG----ERALSKVIPNEVDFPYTIRLVS 428
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+VI+++G T A+I + +A+ D ++ + + G +I
Sbjct: 429 EVIESNGSTSQASICASTLAMMDAGVPIKAPVAGVAMGLIKDGDHVSILTD--------- 479
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T G + +Q + + L AK+ ++ +
Sbjct: 480 IQGMEDHLGDMDFKVAGTPDG-VTAIQMDIKIDGIDRAILQEALQQAKEGRMHILGKMAE 538
Query: 237 VI 238
I
Sbjct: 539 AI 540
Score = 111 bits (277), Expect = 1e-22, Method: Composition-based stats.
Identities = 35/232 (15%), Positives = 79/232 (34%), Gaps = 26/232 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATL---EEKVPMWIRNTKHGWITAEYGMLP 67
R + ++K A + +V++G+T +L T T + + + + G +P
Sbjct: 12 RPLVFETGRLAKQANAAVMVRYGETAVLCTVTASSEPKDLDFFPLTVNYEERLYAVGKIP 71
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R GR ++ R+ R +R + Q++ + D
Sbjct: 72 GGFIKR------EGRPSEKAILASRLTDRPIRPLFPEGFRNDVQVLNLVMSVDQDCEPEI 125
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
AA+ G A G + ++ G + G +V+ + E D+
Sbjct: 126 AAMIGTSAA-------------LSISDVPFNGPIGGVAVGRVDGNFVVNPNIAEQEASDI 172
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
T I+ V+ AE ++ + + I ++ +++++
Sbjct: 173 YLVVAGTRD-AIMMVE--AEANEVPEEVMLEAIMFGHEEIKKIVAKIEELVA 221
>gi|239907801|ref|YP_002954542.1| polyribonucleotide nucleotidyltransferase [Desulfovibrio magneticus
RS-1]
gi|239797667|dbj|BAH76656.1| polyribonucleotide nucleotidyltransferase [Desulfovibrio magneticus
RS-1]
Length = 751
Score = 151 bits (381), Expect = 8e-35, Method: Composition-based stats.
Identities = 47/244 (19%), Positives = 83/244 (34%), Gaps = 18/244 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTKH 56
+RL GR +R I + V GS L G+T L A T +E+ + +
Sbjct: 320 IRLDGRNTTTVRPIGIEVGVLPRTHGSALFARGETKALCVATLGSTGDEQKIETLNGETY 379
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P G S R+ G R++ V+ + I
Sbjct: 380 KRFMLHYNFPPYCVGEVKMLRGPSRREIGHGAL----AERSILPVLPGPEEFPFTMRIVS 435
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
V++++G + A++ GA +AL D ++ + + + +
Sbjct: 436 QVMESNGSSSMASVAGASLALMDAGVPIKAPVAGIAMGLIKEDDDFLVLTD--------- 486
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED+ D+D T G + +Q + Q LN AKD ++
Sbjct: 487 ILGDEDAMGDMDFKVAGTADG-VTGIQMDIKITGIPQAVMRQALNQAKDARLHILGRMAA 545
Query: 237 VISN 240
V+
Sbjct: 546 VLPE 549
Score = 97.6 bits (241), Expect = 1e-18, Method: Composition-based stats.
Identities = 43/232 (18%), Positives = 80/232 (34%), Gaps = 25/232 (10%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTAT---LEEKVPMWIRNTKHGWITAEYGMLPRS 69
+++ ++ A+G+ ++ G T +L TA L E+ + + + G +P S
Sbjct: 19 VTIETGRLANQADGAIWIQSGGTVVLVTACTQALAEEKGFFPLVVDYQEMAYAAGRIPGS 78
Query: 70 TGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAA 129
R GR R + R+I R R + QII + A
Sbjct: 79 YFRR-----EIGRPSEREVLVCRLIDRPCRPLFPKGFRDEVQIIATVLSADGEVEPDVLA 133
Query: 130 ITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDA 189
+TGA ALH +G +A G + G +++ + +
Sbjct: 134 LTGASAALH-------------LSKIPFQGPIAGGRVGYIDGQFVLNPTVAQIAAGADLN 180
Query: 190 NFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
+V V+G+ S++ L I L+ LQ+ + +
Sbjct: 181 LVFAASRDAVVMVEGAGR--FVSEELLADALEFGHKAILPLLDLQEQ-LREK 229
>gi|221068616|ref|ZP_03544721.1| Polyribonucleotide nucleotidyltransferase [Comamonas testosteroni
KF-1]
gi|220713639|gb|EED69007.1| Polyribonucleotide nucleotidyltransferase [Comamonas testosteroni
KF-1]
Length = 747
Score = 151 bits (381), Expect = 8e-35, Method: Composition-based stats.
Identities = 42/243 (17%), Positives = 89/243 (36%), Gaps = 18/243 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +R I + V GS L G+T L +TL + + +
Sbjct: 317 RIDGRDTRTVRPIEIRSSVLPRTHGSALFTRGETQALVISTLGTERDAQKIDALAGEFED 376
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y M P +TG + + R+ G + RAL + + I + +
Sbjct: 377 RFLFHYNMPPFATGEVGRMGSTKRREIGHGRL----AKRALAACLPTKEEFPYTIRVVSE 432
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ G +++ D M+ + + + + A+ +
Sbjct: 433 ITESNGSSSMASVCGGCLSMMDAGVPMKAHVAGIAMGLIKEDNKFAVLTD---------I 483
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T +G I +Q + +++ L AK+ ++ ++
Sbjct: 484 LGDEDHLGDMDFKVAGTTNG-ITALQMDIKIQGITKEIMQVALAQAKEARMHILGKMQEA 542
Query: 238 ISN 240
+
Sbjct: 543 MGE 545
Score = 91.4 bits (225), Expect = 8e-17, Method: Composition-based stats.
Identities = 32/232 (13%), Positives = 73/232 (31%), Gaps = 31/232 (13%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEE----KVPMWIRNTKHGWITAEYGMLPR 68
+++ +++ A G+ LV DT +L T + + + T G +P
Sbjct: 18 VTMETGEIARQASGAVLVNIDDTVVLATVVGSKIAKAGQDFFPLTVDYIEKTYAAGKIPG 77
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
S R + R+I R +R + ++I + + A
Sbjct: 78 SFFKR------EAKPSELETLTSRLIDRPIRPLFPEGFYNDVHVVIHTISLNPEVDADIA 131
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+ A G + A G + G +++ + +D
Sbjct: 132 AMIAVSAA-------------LAVSGLPFNGPIGAARVGYINGEYVLNPGQTQRKDSQMD 178
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKD----RIADLIKLQKD 236
T+S ++ V+ A++ ++ + + I + L ++
Sbjct: 179 LVVAGTES-AVLMVESEAQQ--LPEEVMLGAVVFGHEQGKIAIDAIHDLVRE 227
>gi|116626786|ref|YP_828942.1| polynucleotide phosphorylase/polyadenylase [Candidatus Solibacter
usitatus Ellin6076]
gi|122251352|sp|Q01NW3|PNP_SOLUE RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|116229948|gb|ABJ88657.1| 3' exoribonuclease [Candidatus Solibacter usitatus Ellin6076]
Length = 701
Score = 151 bits (381), Expect = 8e-35, Method: Composition-based stats.
Identities = 49/241 (20%), Positives = 83/241 (34%), Gaps = 19/241 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIR-NTKH 56
R GR+ +Q+R+I++ V GS L G+T L T TL +E+ +
Sbjct: 311 RPDGREFDQIRQITIETGVLPRVHGSTLFTRGETQALVTVTLGTKDDEQRIELLEPGEAS 370
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P S G R+ G RAL +++ + +
Sbjct: 371 KRFMLHYNFPPFSVGEVGFMRGAGRREIGHGAL----AERALTALIPGEDKFPYTMRVVS 426
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
D ++++G + AAI G +AL M + V++G AI
Sbjct: 427 DTLESNGSSSMAAICGGSLALMQAGVPMTAHVGGVAMGLVMEGKDYAILTD--------- 477
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T G I +Q + + L A+ ++ +
Sbjct: 478 IAGAEDHYGDMDFKVAGTRDG-ITGMQMDIKVPNITTAIMKEALEQARRGRLFILDKMYE 536
Query: 237 V 237
Sbjct: 537 A 537
Score = 101 bits (252), Expect = 6e-20, Method: Composition-based stats.
Identities = 42/233 (18%), Positives = 79/233 (33%), Gaps = 27/233 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPM----WIRNTKHGWITAEYGML 66
R+I+L ++K A G+ +V+ GD +L TA + ++ + + T G +
Sbjct: 12 RKITLETGKMAKQANGAVVVRSGDAVVLVTACMADQPKPSAGFFPLTVDYREYTYAAGKI 71
Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
P R GR + R+I R +R + + QII +
Sbjct: 72 PGGFIKR------EGRLSEKEVLTCRLIDRPIRPLFPEGFMNETQIIAMVLSADPEQDPN 125
Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
+ AI G A + +A + GM G + Y E
Sbjct: 126 SLAIVGTAAA-------------LAISDIPFQYVMAGVRVGMRDGQYTANPTYTEGRASK 172
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
++ T+ G IV V+ A+ S+ + + + + ++
Sbjct: 173 LNIVVAGTEEG-IVMVEAGAQE--VSEAEVLGAIEFGHECCKKIAAGIRQLMK 222
>gi|254992778|ref|ZP_05274968.1| polynucleotide phosphorylase/polyadenylase [Listeria monocytogenes
FSL J2-064]
Length = 658
Score = 151 bits (381), Expect = 8e-35, Method: Composition-based stats.
Identities = 51/243 (20%), Positives = 89/243 (36%), Gaps = 18/243 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
+R GR+ N++R +S + GS L G T L+ TL E ++ + ++
Sbjct: 251 IRPDGRKVNEIRPLSSEVGMLPRVHGSGLFTRGQTQALSVCTLAPLREHQIIDGLGTEEY 310
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y S G R A R+ G RAL+ V+ I +
Sbjct: 311 KRFMHHYNFPQFSVGETGPRRAPGRREIGHGALG----ERALQYVIPSEEEFPYTIRLVS 366
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V++++G + A+I G+ +A+ D ++ + V G I
Sbjct: 367 EVLESNGSSSQASICGSTLAMLDAGVPIKAPVAGIAMGLVKLGDDYTILSD--------- 417
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T G I +Q + S+ L AK+ +++
Sbjct: 418 IQGMEDHFGDMDFKVAGTKDG-ITALQMDIKIDGLSRQILDEALTQAKEGRLHILEHLTS 476
Query: 237 VIS 239
IS
Sbjct: 477 TIS 479
Score = 73.7 bits (179), Expect = 2e-11, Method: Composition-based stats.
Identities = 32/180 (17%), Positives = 59/180 (32%), Gaps = 22/180 (12%)
Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119
G +P R GR R+ R+I R +R + QI +
Sbjct: 1 MYSVGKVPGGFLKR------EGRPSDRATLTARLIDRPIRPLFAEGFRNEVQITSTVFSV 54
Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179
D AA+ G+ VA +G +A + G + G +++
Sbjct: 55 DQDCSPEMAAMLGSSVA-------------LVISDIPFEGPIAGVDVGRIDGKYVINPTI 101
Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
+ D+ T I V+ A+ S++ + + I L + Q+ +I+
Sbjct: 102 EQAEKSDISLTVAGTYD-AINMVEAGAKE--VSEEAMLEAIMFGHEEIKRLCEFQQQIIA 158
>gi|86148613|ref|ZP_01066896.1| putative polyribonucleotide nucleotidyltransferase [Vibrio sp.
MED222]
gi|85833604|gb|EAQ51779.1| putative polyribonucleotide nucleotidyltransferase [Vibrio sp.
MED222]
Length = 706
Score = 151 bits (381), Expect = 8e-35, Method: Composition-based stats.
Identities = 44/242 (18%), Positives = 93/242 (38%), Gaps = 18/242 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR+++ +R + + V GS L G+T L TATL + ++ + K
Sbjct: 316 RIDGREKDMVRALDVRTGVLPRTHGSSLFTRGETQALVTATLGTQRDAQIIDSLMGEKKD 375
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P G + R+ G + R +++V+ + + +
Sbjct: 376 NFLLHYNFPPYCVGETGFVGSPKRREIGHGKL----AKRGIQAVMPSVDEFPYTVRVVSE 431
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ G +AL D ++ + V +G + +
Sbjct: 432 ITESNGSSSMASVCGTSLALMDAGVPIKASVAGIAMGLVKEGDDFVVLSD---------I 482
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T++G I +Q + +++ LN A+ ++ + +
Sbjct: 483 LGDEDHLGDMDFKVAGTNAG-ITALQMDIKIEGITKEIMQIALNQAQGARKHILSVMDEA 541
Query: 238 IS 239
IS
Sbjct: 542 IS 543
Score = 88.0 bits (216), Expect = 1e-15, Method: Composition-based stats.
Identities = 34/228 (14%), Positives = 72/228 (31%), Gaps = 27/228 (11%)
Query: 14 ISLTRRV-SKYAEGSCLVKFGDTHLLTTATLEEKV----PMWIRNTKHGWITAEYGMLPR 68
++L V ++ A + + DT + + +++ + + T G +P
Sbjct: 17 VTLETGVMARQATAAVMATMDDTSVFVSVVAKKEAVAGQDFFPLTVNYQERTYAAGKIPG 76
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
R GR R+I R +R + + Q+I I D
Sbjct: 77 GFFKR------EGRPSEGETLTARLIDRPIRPLFPSAFKNEVQVIATVVSINPDVNPDMI 130
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
+ A G + A G + G +++ E +D
Sbjct: 131 TMIATSAA-------------LAISGAPFNGPIGAARVGHIDGELVLNPSNTELENSKLD 177
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
T+ G ++ V+ +E S++ + + D+ +IK +
Sbjct: 178 LVVSGTE-GAVLMVE--SEADNLSEEEMLSAVVYGHDQQQVVIKAINE 222
>gi|224533071|ref|ZP_03673676.1| polyribonucleotide nucleotidyltransferase [Borrelia burgdorferi
WI91-23]
gi|224512007|gb|EEF82403.1| polyribonucleotide nucleotidyltransferase [Borrelia burgdorferi
WI91-23]
Length = 722
Score = 151 bits (381), Expect = 9e-35, Method: Composition-based stats.
Identities = 49/244 (20%), Positives = 87/244 (35%), Gaps = 19/244 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
+R GR N++R+I + GS L G+T L TL +E++ I K
Sbjct: 315 IRTDGRTPNEIRDIISEVDILSRTHGSALFTRGETQALAVTTLGTSIDEQIMDDIDGDKR 374
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P S G + R+ G RAL S+V I +
Sbjct: 375 LNFMLHYNFPPFSVGETGRLMTGR-REIGHGHL----AQRALESMVPGKNDFPYTIRVVS 429
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V++++G + A + ++L ++ + + +G +
Sbjct: 430 EVLESNGSSSMATVCAGSMSLMSAGVPVKGQVAGIAMGLISEGDKYVVLSD--------- 480
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T +G I Q + ++D L A+ ++ +
Sbjct: 481 ILGEEDHLGDMDFKVAGTKNG-ITGFQMDIKIENVTKDLMRDALEQARIGRIHILSIMNT 539
Query: 237 VISN 240
VISN
Sbjct: 540 VISN 543
Score = 108 bits (270), Expect = 6e-22, Method: Composition-based stats.
Identities = 45/239 (18%), Positives = 79/239 (33%), Gaps = 32/239 (13%)
Query: 5 GRQENQMREISLTRRV-SKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----HGWI 59
GR E+ +K A GS L +G + +L T V + +
Sbjct: 10 GRD-----ELVFETGFMAKQANGSVLATYGGSSVLATVCCSSNVREDLDFVPLSVEYNEK 64
Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119
G +P R G+ + + R+I R +R + D Q+I
Sbjct: 65 YYAAGKIPGGFIKR------EGKPKDKEILVSRLIDRPMRPLFDKRFGREIQVIPTTLAT 118
Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179
+ A+ A+ G +AA+ L G IV+ +
Sbjct: 119 DQLNPPDIVGMNAAFTAVF-------------LSDIPFNGPIAAVRMVYLNGKFIVNPSF 165
Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
E D+D + +G I V+G A +D + ++ A + I + QK+ +
Sbjct: 166 EEIHDSDLDIVVAGSLNG-ITMVEGGANEVG--EDILLSAIDGAHEYIKQICNAQKEFL 221
>gi|326335448|ref|ZP_08201635.1| polyribonucleotide nucleotidyltransferase [Capnocytophaga sp. oral
taxon 338 str. F0234]
gi|325692214|gb|EGD34166.1| polyribonucleotide nucleotidyltransferase [Capnocytophaga sp. oral
taxon 338 str. F0234]
Length = 725
Score = 151 bits (381), Expect = 9e-35, Method: Composition-based stats.
Identities = 48/243 (19%), Positives = 81/243 (33%), Gaps = 20/243 (8%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
+RL GR Q+R I GS + G+T L T TL E V
Sbjct: 317 IRLDGRNTKQIRPIWCEVGYLPSPHGSSIFTRGETQALATVTLGTSREANVIDIPSEQSE 376
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P STG S R+ G QR + R + + +
Sbjct: 377 ERFYLHYNFPPFSTGEARPLRGTSRREIGHGNLAQRALKRMIP------EDCPYTVRVVS 430
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
++++++G + A + +AL D M+ + + + G A+
Sbjct: 431 EILESNGSSSMATVCAGTLALMDAGIQMKKPVSGIAMGLITDGDKYAVLSD--------- 481
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T G I Q + + + L A++ ++ D
Sbjct: 482 ILGDEDHLGDMDFKVTGTKDG-ITACQMDIKIKGLTYEILEKALEQAREGRMYILGKITD 540
Query: 237 VIS 239
I+
Sbjct: 541 TIA 543
Score = 106 bits (265), Expect = 2e-21, Method: Composition-based stats.
Identities = 39/240 (16%), Positives = 77/240 (32%), Gaps = 28/240 (11%)
Query: 8 ENQMREISLTRR-VSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGWITAE 62
R IS+ ++K A+G+ +V+ G+ LL T E V + A
Sbjct: 12 LGDGRTISIETGKLAKQADGAVVVRMGNAMLLATVVANKEPGEGVDFLPLTVDYREKFAA 71
Query: 63 YGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQAD 122
G P R R + R++ R LR + Q++I +
Sbjct: 72 AGRFPGGFFKR------ESRPSDQEILTMRLVDRVLRPLFPEEYYCEVQVMIQLMSHDEN 125
Query: 123 GGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGED 182
L + + G ++ + G + G +++ + E
Sbjct: 126 VMPD-------------ALAGLAASACLAVSDIPFDGPISEVRVGRINGQFVINPNAKEL 172
Query: 183 STIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNEV 242
+ D+D + + V+ E S+ + A + I I+ Q + + +V
Sbjct: 173 TQSDMDIMVGASKEF-VAMVE--GEMDEVSEKDMADAIRFAHEAIKTQIEAQ-ERLKAKV 228
>gi|312149591|gb|ADQ29662.1| polyribonucleotide nucleotidyltransferase [Borrelia burgdorferi
N40]
Length = 716
Score = 151 bits (381), Expect = 9e-35, Method: Composition-based stats.
Identities = 49/244 (20%), Positives = 87/244 (35%), Gaps = 19/244 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
+R GR N++R+I + GS L G+T L TL +E++ I K
Sbjct: 309 IRTDGRTPNEIRDIISEVDILSRTHGSALFTRGETQALAVTTLGTSIDEQIMDDIDGDKR 368
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P S G + R+ G RAL S+V I +
Sbjct: 369 LNFMLHYNFPPFSVGETGRLMTGR-REIGHGHL----AQRALESMVPGKNDFPYTIRVVS 423
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V++++G + A + ++L ++ + + +G +
Sbjct: 424 EVLESNGSSSMATVCAGSMSLMSAGVPVKGQVAGIAMGLISEGDKYVVLSD--------- 474
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T +G I Q + ++D L A+ ++ +
Sbjct: 475 ILGEEDHLGDMDFKVAGTKNG-ITGFQMDIKIENVTKDLMRDALEQARIGRIHILSIMNT 533
Query: 237 VISN 240
VISN
Sbjct: 534 VISN 537
Score = 108 bits (270), Expect = 6e-22, Method: Composition-based stats.
Identities = 45/239 (18%), Positives = 79/239 (33%), Gaps = 32/239 (13%)
Query: 5 GRQENQMREISLTRRV-SKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----HGWI 59
GR E+ +K A GS L +G + +L T V + +
Sbjct: 4 GRD-----ELVFETGFMAKQANGSVLATYGGSSVLATVCCSSNVREDLDFVPLSVEYNEK 58
Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119
G +P R G+ + + R+I R +R + D Q+I
Sbjct: 59 YYAAGKIPGGFIKR------EGKPKDKEILVSRLIDRPMRPLFDKRFGREIQVIPTTLAT 112
Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179
+ A+ A+ G +AA+ L G IV+ +
Sbjct: 113 DQLNPPDIVGMNAAFTAVF-------------LSDIPFNGPIAAVRMVYLNGKFIVNPSF 159
Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
E D+D + +G I V+G A +D + ++ A + I + QK+ +
Sbjct: 160 EEIHDSDLDIVVAGSLNG-ITMVEGGANEVG--EDILLSAIDGAHEYIKQICNAQKEFL 215
>gi|54307819|ref|YP_128839.1| polynucleotide phosphorylase/polyadenylase [Photobacterium
profundum SS9]
gi|81400130|sp|Q6LUI8|PNP_PHOPR RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|46912242|emb|CAG19037.1| putative polyribonucleotide nucleotidyltransferase [Photobacterium
profundum SS9]
Length = 707
Score = 151 bits (380), Expect = 9e-35, Method: Composition-based stats.
Identities = 47/244 (19%), Positives = 90/244 (36%), Gaps = 18/244 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR+++ +R + + V GS L G+T L TATL + ++ I K
Sbjct: 314 RIDGREKDMVRALDVRTGVLPRTHGSSLFTRGETQALVTATLGTQRDAQIIDSIMGEKKD 373
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P G + R+ G + R + +V+ + + +
Sbjct: 374 HFLLHYNFPPYCVGETGFVGSPKRREIGHGKL----AKRGIAAVMPSVEEFPYTVRVVSE 429
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ G +AL D ++ + V +G + +
Sbjct: 430 ITESNGSSSMASVCGTSLALMDAGVPIKASVAGIAMGLVKEGDDFVVLSD---------I 480
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D TD G I +Q + +++ LN AK ++ + D
Sbjct: 481 LGDEDHLGDMDFKVAGTDDG-ITALQMDIKIEGITKEIMQIALNQAKGARKHILSVMDDA 539
Query: 238 ISNE 241
I
Sbjct: 540 IGTH 543
Score = 88.0 bits (216), Expect = 9e-16, Method: Composition-based stats.
Identities = 30/228 (13%), Positives = 66/228 (28%), Gaps = 27/228 (11%)
Query: 14 ISLTRRV-SKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKHGWITAEYGMLPR 68
++L V ++ A + + DT + + + E + + T G +P
Sbjct: 15 VTLETGVMARQATAAVMASMDDTSVFVSVVGKKAAVEGQDFFPLTVNYQERTYAAGKIPG 74
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
R GR R+I R +R + + Q+I + +
Sbjct: 75 GFFKR------EGRPSEGETLTARLIDRPIRPLFPSAFKNEVQVIATVVSVNPEVNPDMI 128
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
+ A G + A G + +++ E +D
Sbjct: 129 TMIATSAA-------------LAISGLPFNGPIGAARVGFINDQFVLNPSNTELEESRLD 175
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
T ++ V+ +E S++ + D+ +I +
Sbjct: 176 LVVSGTKD-AVLMVE--SEADRLSEETMLQAVVYGHDQQQVVINAINE 220
>gi|256821536|ref|YP_003145499.1| polyribonucleotide nucleotidyltransferase [Kangiella koreensis DSM
16069]
gi|256795075|gb|ACV25731.1| Polyribonucleotide nucleotidyltransferase [Kangiella koreensis DSM
16069]
Length = 706
Score = 151 bits (380), Expect = 9e-35, Method: Composition-based stats.
Identities = 42/243 (17%), Positives = 86/243 (35%), Gaps = 18/243 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR + +R + + V GS + G+T + ATL + ++ I
Sbjct: 315 RIDGRDPDMVRALDVRTGVFPRTHGSAIFTRGETQAMVFATLGTERDAQIKDSIMGEAKD 374
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P G + R+ G + R + ++V A I + +
Sbjct: 375 HFMLHYNFPPYCVGETGFMGSPKRREIGHGRL----AKRGVAAMVPGIAEFPYTIRVVSE 430
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ G +AL D M+ + V + + +
Sbjct: 431 ITESNGSSSMASVCGTSLALMDAGVPMKAPVAGIAMGLVKEADNFVVLSD---------I 481
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T++G I +Q + +Q+ L+ AK ++ +
Sbjct: 482 LGDEDHLGDMDFKVAGTENG-ITALQMDIKIEGITQEIMEQALHQAKGGRLHILSVMNQA 540
Query: 238 ISN 240
+
Sbjct: 541 LEK 543
Score = 89.5 bits (220), Expect = 3e-16, Method: Composition-based stats.
Identities = 40/234 (17%), Positives = 76/234 (32%), Gaps = 27/234 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKV----PMWIRNTKHGWITAEYGML 66
R +++ V++ A G+ ++ T T +++V + + T G +
Sbjct: 13 RTVTIETGRVARQATGAVVIDCDGTTAFVAVTGKKEVREGQDFFPLTVNYTEKTYAAGKI 72
Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
P R R I R+I R LR + + Q++I + D T
Sbjct: 73 PGGFLKR------EARPSDEETLIARLIDRPLRPLFPDGFMNEVQVVITIVSVNQDVPTE 126
Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
A+ GA A G V A G L G +++ +
Sbjct: 127 VVAMLGASAA-------------LEISGIPFSGPVGAAQVGYLDGEYVLNPSVTQLKESK 173
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
+D T+S ++ V+ A ++ + IK K++ +
Sbjct: 174 LDLMVAGTES-AVLMVESEANE--LPENVMLGAVMFGHQESQVAIKAIKELAAE 224
>gi|160947658|ref|ZP_02094825.1| hypothetical protein PEPMIC_01593 [Parvimonas micra ATCC 33270]
gi|158446792|gb|EDP23787.1| hypothetical protein PEPMIC_01593 [Parvimonas micra ATCC 33270]
Length = 702
Score = 151 bits (380), Expect = 9e-35, Method: Composition-based stats.
Identities = 50/243 (20%), Positives = 93/243 (38%), Gaps = 16/243 (6%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56
+R R+ +++R+IS R + GS L G T +LT T E +V + +
Sbjct: 311 IRPDDRELDEVRKISCERGLLPRTHGSGLFTRGQTQVLTLTTLGAPGEVQVLDGVIDEDD 370
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
+Y P S G+ + R+ G RAL V+ + +
Sbjct: 371 KRYMHQYNFPPFSVGDVRPLRSPGRREIGHGAL----AERALVPVLPSEEEFPYTMRLVS 426
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V+ ++G + A+I G+ ++L D ++D + + I+ + D
Sbjct: 427 EVLSSNGSSSQASICGSTLSLLDAGVPIKDSVAGIAMGLIKDEKTNKIA-------ILTD 479
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T G I +Q + S++ L AK ++ + D
Sbjct: 480 IQGLEDHFGDMDFKVAGTKDG-ITALQMDIKIDGISREILATALEKAKRARLHILSIMND 538
Query: 237 VIS 239
I+
Sbjct: 539 CIA 541
Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats.
Identities = 46/236 (19%), Positives = 84/236 (35%), Gaps = 28/236 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKHGWITAEYGML 66
RE+ +T V++ A GSCLV+ G+T +L A E V + + G +
Sbjct: 12 RELKVTIGKVAEQANGSCLVQCGETVVLVNACASKEPREGVDFFPLSCDFEEKLYSVGKI 71
Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
P R GR +S R+I R LR + Q+I ++ D
Sbjct: 72 PGGFIKR------EGRPSEKSILTSRLIDRPLRPLFPEGYRNDVQVIATALSVEQDNQPD 125
Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
A+ G+ +A G +++ G + G +++ +
Sbjct: 126 ILAMIGSSIA-------------LTISDIPFNGPTGSVNVGYVDGEYVINPTIAQREKSR 172
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNEV 242
++ T I+ V+ A+ S++ + A + I + + I EV
Sbjct: 173 LNITVSGTKD-AIMMVEAGADI--LSEEEVLNAILFAHEEIKSICNFI-ETIREEV 224
>gi|197117696|ref|YP_002138123.1| polynucleotide phosphorylase/polyadenylase [Geobacter bemidjiensis
Bem]
gi|257096691|sp|B5EI63|PNP_GEOBB RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|197087056|gb|ACH38327.1| polyribonucleotide nucleotidyltransferase [Geobacter bemidjiensis
Bem]
Length = 696
Score = 151 bits (380), Expect = 9e-35, Method: Composition-based stats.
Identities = 50/242 (20%), Positives = 85/242 (35%), Gaps = 18/242 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +R IS + A GS L G+T + ATL +E+ +
Sbjct: 312 RIDGRDTKTIRAISTEVSLLPRAHGSALFTRGETQSIVAATLGTSVDEQRIDSLYGDSRK 371
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G R A R+ G RAL+ V+ I I D
Sbjct: 372 KFMLHYNFPPYSVGETSFRLAPGRREIGHGML----AERALQQVLPKHDDFPYTIRIVSD 427
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A + G +++ D ++ + + +G AI +
Sbjct: 428 ITESNGSSSMATVCGGSLSMMDAGIPIKAPVAGIAMGLIKEGDDFAILSD---------I 478
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T G + +Q + +++ A L AK ++
Sbjct: 479 LGDEDHLGDMDFKVAGTAEG-VTALQMDIKIGGVTREIMSAALAQAKAGRIHILGEMAKT 537
Query: 238 IS 239
I
Sbjct: 538 IG 539
Score = 101 bits (251), Expect = 9e-20, Method: Composition-based stats.
Identities = 44/234 (18%), Positives = 83/234 (35%), Gaps = 28/234 (11%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVP----MWIRNTKHGWITAEYGMLPR 68
I++ ++K A G+ ++K GDT +L TA + + + G +P
Sbjct: 14 ITIETGKIAKQASGAVMIKSGDTMVLVTAVAMKSAKEGQGFFPLTVNYQEKAYAGGRIPG 73
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
S R GR R+I R +R + + L QI+ D
Sbjct: 74 SFFKR------EGRPSDNETLTCRLIDRPIRPLFPENFLNDTQIMATVVSADKDNDPGIL 127
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
++ GA AL G +A + G + G I + ++ D++
Sbjct: 128 SMIGASAALM-------------VSDVPFAGPIAGVKVGRVDGQFIANPTAEQEEKSDLE 174
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNEV 242
+ I+ V+GSA S+D + + ++ Q + ++ +V
Sbjct: 175 IVIAASQD-AILMVEGSACE--VSEDDLLEAIFFGHKAVQPVLAAQLE-LAKKV 224
>gi|108758625|ref|YP_630239.1| ribonuclease PH [Myxococcus xanthus DK 1622]
gi|122389586|sp|Q1DAT4|RNPH_MYXXD RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|108462505|gb|ABF87690.1| ribonuclease PH [Myxococcus xanthus DK 1622]
Length = 237
Score = 151 bits (380), Expect = 9e-35, Method: Composition-based stats.
Identities = 113/239 (47%), Positives = 150/239 (62%), Gaps = 2/239 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR R +R + LT VS+YAEGS V+FG T +L T + EE+VP + GW+T
Sbjct: 1 MRSFQRGALDLRPVVLTPGVSRYAEGSVQVEFGHTKVLVTCSTEERVPPHLMGKGSGWVT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPR+T +R +RE+ G+Q GR+ EIQR+IGR+LR+ VDLS LG R + +DCDV+Q
Sbjct: 61 AEYGMLPRATHSRNQRESAKGKQTGRTMEIQRLIGRSLRAAVDLSTLGPRTLTLDCDVLQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+ITGA+VAL L+ ++ +AA+S G++ G VDLDY
Sbjct: 121 ADGGTRTASITGAYVALVLALRSLQKA--GTISKLPKLTPLAAVSVGIVKGEVRVDLDYD 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
EDST DVD N V T G +VE+QG+AE F + AM++ I L Q V+
Sbjct: 179 EDSTADVDLNLVATADGRMVELQGTAEHQLFDRKALDAMVDGGLAAIQKLTAAQAQVLG 237
>gi|84387281|ref|ZP_00990302.1| polyribonucleotide nucleotidyltransferase [Vibrio splendidus 12B01]
gi|84377928|gb|EAP94790.1| polyribonucleotide nucleotidyltransferase [Vibrio splendidus 12B01]
Length = 706
Score = 151 bits (380), Expect = 9e-35, Method: Composition-based stats.
Identities = 44/242 (18%), Positives = 93/242 (38%), Gaps = 18/242 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR+++ +R + + V GS L G+T L TATL + ++ + K
Sbjct: 316 RIDGREKDMVRALDVRTGVLPRTHGSSLFTRGETQALVTATLGTQRDAQIIDSLMGEKKD 375
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P G + R+ G + R +++V+ + + +
Sbjct: 376 NFLLHYNFPPYCVGETGFVGSPKRREIGHGKL----AKRGIQAVMPSVDEFPYTVRVVSE 431
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ G +AL D ++ + V +G + +
Sbjct: 432 ITESNGSSSMASVCGTSLALMDAGVPIKASVAGIAMGLVKEGDDFVVLSD---------I 482
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T++G I +Q + +++ LN A+ ++ + +
Sbjct: 483 LGDEDHLGDMDFKVAGTNAG-ITALQMDIKIEGITKEIMQIALNQAQGARKHILSVMDEA 541
Query: 238 IS 239
IS
Sbjct: 542 IS 543
Score = 88.0 bits (216), Expect = 1e-15, Method: Composition-based stats.
Identities = 34/228 (14%), Positives = 72/228 (31%), Gaps = 27/228 (11%)
Query: 14 ISLTRRV-SKYAEGSCLVKFGDTHLLTTATLEEKV----PMWIRNTKHGWITAEYGMLPR 68
++L V ++ A + + DT + + +++ + + T G +P
Sbjct: 17 VTLETGVMARQATAAVMATMDDTSVFVSVVAKKEAVAGQDFFPLTVNYQERTYAAGKIPG 76
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
R GR R+I R +R + + Q+I I D
Sbjct: 77 GFFKR------EGRPSEGETLTARLIDRPIRPLFPSAFKNEVQVIATVVSINPDVNPDMI 130
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
+ A G + A G + G +++ E +D
Sbjct: 131 TMIATSAA-------------LAISGAPFNGPIGAARVGHIDGELVLNPSNTELENSKLD 177
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
T+ G ++ V+ +E S++ + + D+ +IK +
Sbjct: 178 LVVSGTE-GAVLMVE--SEADNLSEEEMLSAVVYGHDQQQVVIKAINE 222
>gi|153004013|ref|YP_001378338.1| polynucleotide phosphorylase/polyadenylase [Anaeromyxobacter sp.
Fw109-5]
gi|187470964|sp|A7H9F8|PNP_ANADF RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|152027586|gb|ABS25354.1| Polyribonucleotide nucleotidyltransferase [Anaeromyxobacter sp.
Fw109-5]
Length = 722
Score = 151 bits (380), Expect = 9e-35, Method: Composition-based stats.
Identities = 48/242 (19%), Positives = 86/242 (35%), Gaps = 18/242 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR E +R+I+ + GS L G+T L TL +E+ +
Sbjct: 324 RIGGRGEADIRKITSEVGLLPRVHGSSLFTRGETQALVATTLGTAEDEQRVEMLTGMVFK 383
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + R+ G RALR V+ + I D
Sbjct: 384 RFMLHYNFPPFSVGEVKFLRSPGRREIGHGAL----AERALRQVMPPEDKFPYTVRIVSD 439
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+++++G + A++ G ++L D ++ + + +G AI +
Sbjct: 440 IMESNGSSSMASVCGGCLSLMDAGVPIKAPVAGIAMGLIKEGEKIAILSD---------I 490
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T G I +Q + +++ L A D ++
Sbjct: 491 LGDEDHLGDMDFKVCGTAEG-ITSIQMDIKIGGVTREILERALAQAADGRKHILGEMAKA 549
Query: 238 IS 239
I+
Sbjct: 550 IA 551
Score = 103 bits (256), Expect = 2e-20, Method: Composition-based stats.
Identities = 49/229 (21%), Positives = 80/229 (34%), Gaps = 27/229 (11%)
Query: 13 EISLTRR-VSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKHGWITAEYGMLP 67
EI L V+K A GS V+ GD+ +L T E + + + G +P
Sbjct: 14 EILLETGKVAKQAHGSVWVRMGDSIVLVTVVSAAEKKEGIDFFPLTVDYQEKLFAAGRVP 73
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
S R GR + R++ R+ R + QII + T
Sbjct: 74 GSFFRR------EGRPTEKETLTSRIVDRSCRPLFAEGYPNETQIIATVISFDQENDTDV 127
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
A+TGA ALH G +A + G + G + + + + D+
Sbjct: 128 LALTGASAALH-------------LSDIPFNGPIAGVRVGRVNGQFVANPTLAQRAEADL 174
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
D + IV V+G A+ S+ L + + +L+ Q
Sbjct: 175 D-VIMAASRDAIVMVEGGAKE--VSEQVMVDALLFGQAAVRELLDAQDA 220
>gi|310779081|ref|YP_003967414.1| polyribonucleotide nucleotidyltransferase [Ilyobacter polytropus
DSM 2926]
gi|309748404|gb|ADO83066.1| polyribonucleotide nucleotidyltransferase [Ilyobacter polytropus
DSM 2926]
Length = 716
Score = 151 bits (380), Expect = 9e-35, Method: Composition-based stats.
Identities = 46/242 (19%), Positives = 91/242 (37%), Gaps = 18/242 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR+ +++R++ GS + G+T + T TL +E++ + +
Sbjct: 324 RVDGRKTDEIRDLYAEIGTLPLPHGSAMFTRGETQAIVTTTLGTKQDEQLVDGLNEEYYK 383
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G A R+ G RAL V+ + + + +
Sbjct: 384 KFYLHYNFPPYSVGEARFMRAPGRRELGHGAL----AERALSYVMPSTDDFPYTVRVVSE 439
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A+I G +AL ++ + V +G A+ ++
Sbjct: 440 ITESNGSSSQASICGGSLALMAAGVPVKSHVAGIAMGLVKEGDDYAVLTDIM-------- 491
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T++G I +Q + ++ L A D +I + K+
Sbjct: 492 -GLEDHLGDMDFKVAGTEAG-ITALQMDIKITGIDENVMRIALKQALDARLQIIGVMKNA 549
Query: 238 IS 239
I
Sbjct: 550 IE 551
Score = 98.8 bits (244), Expect = 6e-19, Method: Composition-based stats.
Identities = 38/230 (16%), Positives = 74/230 (32%), Gaps = 27/230 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGML 66
R +SL+ +++ + G+ ++++GDT LL+T + + G
Sbjct: 14 RTLSLSTGKIARQSCGAVMIQYGDTILLSTVNRSKEGRKGADFFPLTVDFLEKYYAVGKF 73
Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
P R R + R+I R +R + I+ D
Sbjct: 74 PGGFHKR------EARPSTDATLTARLIDRPIRPMFPEGFNYDVHIVNTVFSYDGDNTPD 127
Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
I G+ AL G VA + M I++ E +
Sbjct: 128 YLGIIGSSAALM-------------LSDIPFLGPVAGVVVAMKGEEFILNPTPKELAESP 174
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
++ + T + V+ A S++ + A D I + + Q++
Sbjct: 175 LNLSVAGTKD-AVNMVEAGASE--MSEEVMLKAILFAHDNIKKICEFQEE 221
>gi|312199598|ref|YP_004019659.1| ribonuclease PH [Frankia sp. EuI1c]
gi|311230934|gb|ADP83789.1| ribonuclease PH [Frankia sp. EuI1c]
Length = 250
Score = 151 bits (380), Expect = 9e-35, Method: Composition-based stats.
Identities = 109/233 (46%), Positives = 143/233 (61%), Gaps = 7/233 (3%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R GR +Q+R++++ R AEGS L+ FG T +L A++ E VP W + + GW+TA
Sbjct: 3 RHDGRAADQLRDVTIVRGWQDQAEGSALINFGRTRVLCAASVTEGVPRWRKGSGLGWVTA 62
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
EY MLPR+T R RE+V GR GGR+ EI R+IGR+LR+ +DL LG I IDCDV+ A
Sbjct: 63 EYSMLPRATNTRNDRESVKGRIGGRTHEISRLIGRSLRACIDLKQLGENTIAIDCDVLLA 122
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
DGGTRTAAITGA+VAL D + V+A+S G++ G P++DL Y E
Sbjct: 123 DGGTRTAAITGAYVALADACGWLGRPKAISGG-------VSAVSVGVVGGVPMLDLAYVE 175
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
DS D D N V TD+G VEVQG+AE F + +L+LA A L K Q
Sbjct: 176 DSAADTDMNVVCTDTGSFVEVQGTAEGVVFDRAMLDQLLDLAVAGCAQLAKAQ 228
>gi|241763284|ref|ZP_04761341.1| Polyribonucleotide nucleotidyltransferase [Acidovorax delafieldii
2AN]
gi|241367559|gb|EER61846.1| Polyribonucleotide nucleotidyltransferase [Acidovorax delafieldii
2AN]
Length = 747
Score = 151 bits (380), Expect = 1e-34, Method: Composition-based stats.
Identities = 45/243 (18%), Positives = 90/243 (37%), Gaps = 18/243 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +R I + V A GS L G+T L TL + + +
Sbjct: 317 RIDGRDTRTVRPIEIRSSVLPRAHGSSLFTRGETQALVVTTLGTERDAQRIDALAGEYED 376
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y M P +TG + + R+ G + RAL +V+ + + +
Sbjct: 377 RFMLHYNMPPFATGEVGRMGSTKRREIGHGRL----AKRALAAVLPTKEEFPYTMRVVSE 432
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ G ++L D M+ + + + + A+ +
Sbjct: 433 ITESNGSSSMASVCGGCLSLMDAGVPMKAHVAGIAMGLIKEDNRFAVLTD---------I 483
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T +G I +Q + +++ L AK+ ++ +D
Sbjct: 484 LGDEDHLGDMDFKVAGTTAG-ITALQMDIKIQGITKEIMQVALAQAKEARIHILGKMQDA 542
Query: 238 ISN 240
+
Sbjct: 543 MGE 545
Score = 92.2 bits (227), Expect = 6e-17, Method: Composition-based stats.
Identities = 32/233 (13%), Positives = 72/233 (30%), Gaps = 31/233 (13%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEE----KVPMWIRNTKHGWITAEYGMLPR 68
+ + +++ A G+ LV DT +L T + + + T G +P
Sbjct: 18 VIMETGEIARQAGGAVLVNIDDTVVLATVVASKTAKAGQDFFPLTVDYIEKTYAAGKIPG 77
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
S R + R+I R +R + ++I + + A
Sbjct: 78 SFFKR------EAKPSEHETLTSRLIDRPIRPLFPEGFFNDVHVVIHTVSLNPEVDADIA 131
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+ A G + A G + G +++ +D
Sbjct: 132 AMIATSAA-------------LAISGIPFNGPIGAARVGYINGEYVLNPGQTARKNSQMD 178
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKD----RIADLIKLQKDV 237
T++ ++ V+ A++ S++ + I + +L ++
Sbjct: 179 LVVAGTEA-AVLMVESEAQQ--LSEEIMLGAVVFGHQQGNVAINAIHELVREA 228
>gi|329901002|ref|ZP_08272663.1| Polyribonucleotide nucleotidyltransferase [Oxalobacteraceae
bacterium IMCC9480]
gi|327549290|gb|EGF33865.1| Polyribonucleotide nucleotidyltransferase [Oxalobacteraceae
bacterium IMCC9480]
Length = 717
Score = 151 bits (380), Expect = 1e-34, Method: Composition-based stats.
Identities = 48/241 (19%), Positives = 89/241 (36%), Gaps = 18/241 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +R I++ V GS L G+T L ATL +E+ +
Sbjct: 320 RIDGRDTRTVRPIAIRTGVLPRTHGSALFTRGETQALVIATLGTARDEQKIDALMGEYSD 379
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y M P +TG + R+ G R+ RAL + + S + + +
Sbjct: 380 RFMLHYNMPPFATGETGRVGTPKRREIG----HGRLAKRALLAALPPVEEFSYSVRLVSE 435
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ G +AL D M+ + + G A+ +
Sbjct: 436 ITESNGSSSMASVCGGCLALMDAGVPMQAHVAGIAMGLIKDGGKFAVLTD---------I 486
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T G I +Q + +++ L AK+ ++ +
Sbjct: 487 LGDEDHLGDMDFKVAGTAKG-ITALQMDIKIQGITKEIMQVALAQAKEGRLHILDKMQQA 545
Query: 238 I 238
+
Sbjct: 546 V 546
Score = 104 bits (260), Expect = 7e-21, Method: Composition-based stats.
Identities = 40/232 (17%), Positives = 83/232 (35%), Gaps = 27/232 (11%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT----KHGWITAEYGMLPR 68
++L +++ A G+ LV DT +L T + + T G +P
Sbjct: 16 VTLETGEIARQASGAVLVSIEDTVVLATVVARKDAKPGQDFFPLTVDYVEKTYAAGRIPG 75
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
R GR + R+I R +R + + QIII + + A
Sbjct: 76 GFFKR------EGRPSEKETLTSRLIDRPVRPLFPEGYMNEVQIIIHVLSVNPEIDPDIA 129
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+ GA A G V A G + G +++ + + D+D
Sbjct: 130 AMIGASAA-------------LSVSGVPFSGPVGAARVGYINGQYVLNPTTTQLKSSDLD 176
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
T++ ++ V+ A++ S++ + +++ +I +++ +
Sbjct: 177 LVVAGTEA-AVLMVESEAKQ--LSEEVMLGAVVFGHEQMKAVIDAIHELVRD 225
>gi|71278713|ref|YP_268932.1| polynucleotide phosphorylase/polyadenylase [Colwellia
psychrerythraea 34H]
gi|123774912|sp|Q482T5|PNP_COLP3 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|71144453|gb|AAZ24926.1| polyribonucleotide nucleotidyltransferase [Colwellia
psychrerythraea 34H]
Length = 705
Score = 151 bits (380), Expect = 1e-34, Method: Composition-based stats.
Identities = 45/240 (18%), Positives = 86/240 (35%), Gaps = 10/240 (4%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R+ GR +R + + V GS + G+T L TATL + +T G T
Sbjct: 315 RIDGRDPESIRALDVMTGVLPRTHGSAVFTRGETQALVTATLGTQRDAQRLDTLMGDKTD 374
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
+ + V G R R+ R + +V+ + + ++ ++
Sbjct: 375 PFMLHYNFPPYCVGETGFVGSPKRREIGHGRLAKRGMLAVMPSLEEFPYAVRVVSEITES 434
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
+G + A++ G +AL D ++ + V +G + + E
Sbjct: 435 NGSSSMASVCGTSLALMDAGVPIKASVAGIAMGLVKEGEKFVVLSD---------ILGDE 485
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
D D+D T +G I +Q + +Q+ LN AK ++ + + I
Sbjct: 486 DHLGDMDFKVAGT-TGGITALQMDIKIEGITQEIMQIALNQAKAARTHILSVMDEAIGGH 544
Score = 93.4 bits (230), Expect = 3e-17, Method: Composition-based stats.
Identities = 35/228 (15%), Positives = 72/228 (31%), Gaps = 27/228 (11%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----HGWITAEYGMLPR 68
++L +++ A + + DT +L + +++ + G +P
Sbjct: 16 VTLETGAIARQASAAVMASMDDTCVLVSVVGKKEAKPGQDFFPLTVNYQERAYAAGKIPG 75
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
S R GR I R+I R +R + Q+II + +
Sbjct: 76 SFFKR------EGRPSEEETLIARLIDRPIRPLFPEGFTNEVQVIITVVSVNPEIAPDII 129
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
++ G A G V A G G I++ E T +D
Sbjct: 130 SLIGTSAA-------------LAISGLPFSGPVGAARVGYTDGQYILNPLQSELPTSQLD 176
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
T ++ V+ +E S++ + +++ + K+
Sbjct: 177 LVVSGT-DSAVLMVE--SEADVLSEEVMLGAVVYGHEQMQVAVSAIKE 221
>gi|260771169|ref|ZP_05880096.1| polyribonucleotide nucleotidyltransferase [Vibrio furnissii CIP
102972]
gi|260613766|gb|EEX38958.1| polyribonucleotide nucleotidyltransferase [Vibrio furnissii CIP
102972]
Length = 711
Score = 151 bits (380), Expect = 1e-34, Method: Composition-based stats.
Identities = 42/242 (17%), Positives = 90/242 (37%), Gaps = 18/242 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR+++ +R + + V GS L G+T L TATL + ++ + +
Sbjct: 316 RIDGREKDMVRALDVRTGVLPRTHGSALFTRGETQALVTATLGTQRDAQIIDELTGERKD 375
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P G + R+ G + R + +V+ + + +
Sbjct: 376 HFLLHYNFPPYCVGETGFVGSPKRREIGHGRL----AKRGIAAVMPSIDEFPYTVRVVSE 431
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ G+ +AL D ++ + V + + +
Sbjct: 432 ITESNGSSSMASVCGSSLALMDAGVPIKASVAGIAMGLVKEEDDFVVLSD---------I 482
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T +G + +Q + +++ LN AK ++ +
Sbjct: 483 LGDEDHLGDMDFKVAGTSNG-VTALQMDIKIEGITKEIMQIALNQAKGARLHILSVMDQA 541
Query: 238 IS 239
IS
Sbjct: 542 IS 543
Score = 92.2 bits (227), Expect = 6e-17, Method: Composition-based stats.
Identities = 38/228 (16%), Positives = 75/228 (32%), Gaps = 27/228 (11%)
Query: 14 ISLTRRV-SKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKHGWITAEYGMLPR 68
++L V ++ A + +V DT + + + E + + T G +P
Sbjct: 17 VTLETGVMARQATAAVMVTMDDTAVFVSVVGKKEAVEGQDFFPLTVNYQERTYAAGKIPG 76
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
R GR R+I R +R + + Q+I + D
Sbjct: 77 GFFKR------EGRPSEGETLTARLIDRPIRPLFPDAFKNEVQVIATVVSVNPDVQPDIV 130
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
+ G A G + A G + G +++ E +T +D
Sbjct: 131 TMIGTSAA-------------LAISGIPFNGPIGAARVGHIDGQLVLNPSNTELATSKLD 177
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
T+S ++ V+ AE S++ + + D+ +IK +
Sbjct: 178 LVVAGTES-AVLMVESEAE--VLSEEEMLSAVVFGHDQQQTVIKAINE 222
>gi|315648088|ref|ZP_07901189.1| polyribonucleotide nucleotidyltransferase [Paenibacillus vortex
V453]
gi|315276734|gb|EFU40077.1| polyribonucleotide nucleotidyltransferase [Paenibacillus vortex
V453]
Length = 701
Score = 151 bits (380), Expect = 1e-34, Method: Composition-based stats.
Identities = 46/244 (18%), Positives = 82/244 (33%), Gaps = 18/244 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56
+R GR +++R I + GS L G T L+ T + ++ I +
Sbjct: 313 VRPDGRGLSEIRPIDCDTSLLPRTHGSGLFTRGQTQALSVCTLGALGDVQILDGIDLEET 372
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P S G A R+ G RAL V+ I +
Sbjct: 373 KRFMHHYNFPPFSVGEARPLRAPGRREIGHGALG----ERALSKVIPNEVEFPYTIRLVS 428
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+VI+++G T A+I + +A+ D ++ + + G +I
Sbjct: 429 EVIESNGSTSQASICASTLAMMDAGVPIKAPVAGVAMGLIKDGDHVSILTD--------- 479
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T G + +Q + + L AK+ ++ +
Sbjct: 480 IQGMEDHLGDMDFKVAGTPEG-VTAIQMDIKIDGIDRAILQEALQQAKEGRMHILGKMAE 538
Query: 237 VISN 240
I
Sbjct: 539 AIQQ 542
Score = 111 bits (278), Expect = 7e-23, Method: Composition-based stats.
Identities = 35/232 (15%), Positives = 79/232 (34%), Gaps = 26/232 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATL---EEKVPMWIRNTKHGWITAEYGMLP 67
R + ++K A + +V++G+T +L T T + + + + G +P
Sbjct: 12 RPLVFETGRLAKQANAAVMVRYGETAVLCTVTASSEPKDLDFFPLTVNYEERLYAVGKIP 71
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R GR ++ R+ R +R + Q++ + D
Sbjct: 72 GGFIKR------EGRPSEKAILASRLTDRPIRPLFPEGFRNDVQVLNLVMSVDQDCEPEI 125
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
AA+ G A G + ++ G + G +V+ D + D+
Sbjct: 126 AAMIGTSAA-------------LSISDVPFNGPIGGVAVGRVDGNFVVNPDIAQQEASDI 172
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
T I+ V+ AE ++ + + I ++ +++++
Sbjct: 173 YLVVSGTKD-AIMMVE--AEANEVPEEVMLEAIMFGHEEIKKIVAKIEELVA 221
>gi|54295598|ref|YP_128013.1| polynucleotide phosphorylase/polyadenylase [Legionella pneumophila
str. Lens]
gi|81367664|sp|Q5WT40|PNP_LEGPL RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|53755430|emb|CAH16926.1| Polynucleotide phosphorylase (PNPase) [Legionella pneumophila str.
Lens]
Length = 729
Score = 151 bits (380), Expect = 1e-34, Method: Composition-based stats.
Identities = 44/240 (18%), Positives = 89/240 (37%), Gaps = 10/240 (4%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R+ GR +R IS+ + + GSCL G+T + ATL + I + G
Sbjct: 314 RIDGRDHRTVRPISVRTKFLERTHGSCLFTRGETQAIVVATLGNERDAQILDGISGESRD 373
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
+ + V G R R+ RAL +V+ + + I ++ ++
Sbjct: 374 RFMLHYNFPPYSVGETGQVGSPKRREIGHGRLAKRALMAVLPDANEFPYVLRIVSEITES 433
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
+G + A + G +AL D ++ + + +G A+ + E
Sbjct: 434 NGSSSMATVCGTSLALMDAGVPLKAPVAGVAMGLIKEGDRYAVLTD---------ILGDE 484
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
D D+D T+ G I +Q + + + + L A + ++ + + ++
Sbjct: 485 DHLGDMDFKVAGTEKG-ITALQMDIKISGITNEIMERALEQALEGRTHILGVMNNALAEH 543
Score = 100 bits (248), Expect = 2e-19, Method: Composition-based stats.
Identities = 40/235 (17%), Positives = 77/235 (32%), Gaps = 28/235 (11%)
Query: 13 EISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGMLP 67
++ L V++ A+G+ + T +L T E + + G +P
Sbjct: 14 KLILETGEVARQADGAVMASMNGTQVLVTVVWKKDGGESNDFFPLTVNYQEKFYAIGKIP 73
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R GR I R+I R +R + + QII + +
Sbjct: 74 GGFNKR------EGRPSDNETLISRLIDRPIRPLFPDNFFNEVQIIATVLSLNPEVSPDI 127
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
A+ GA A G + A G G +++ E +
Sbjct: 128 IAMIGASAA-------------LSISGVPFNGPIGAARVGYKDGVYLLNPSRKEQEESKL 174
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNEV 242
D T I+ V+ A+ S+D + + + ++IK ++ ++ +V
Sbjct: 175 DLVIAGTKD-AILMVESEAQE--LSEDIMRGAMLYGHEMMKNVIKSIEE-LARDV 225
>gi|313674338|ref|YP_004052334.1| polyribonucleotide nucleotidyltransferase [Marivirga tractuosa DSM
4126]
gi|312941036|gb|ADR20226.1| polyribonucleotide nucleotidyltransferase [Marivirga tractuosa DSM
4126]
Length = 713
Score = 151 bits (380), Expect = 1e-34, Method: Composition-based stats.
Identities = 48/242 (19%), Positives = 86/242 (35%), Gaps = 16/242 (6%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHG 57
RL GR+ +++R I A GS + G+T LTT T L+E++ ++ +
Sbjct: 321 RLDGRKLDEIRPIWSEIDYLPSAHGSAVFTRGETQSLTTVTLGTKLDEQMVDGAVHSGYN 380
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y STG R+ G RAL+ ++ I + D
Sbjct: 381 KFILHYNFPAFSTGEARPNRGPGRREVGHGNL----ALRALKQILPTPDELPYTIRVVSD 436
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+++++G + A + +AL D ++ + + + + D+
Sbjct: 437 ILESNGSSSMATVCAGSLALMDAGIPIKAPVSGIAMGLISDPETG-------KYAILSDI 489
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T+ G I Q + S + LN AK +
Sbjct: 490 LGDEDHIGDMDFKVTGTEKG-ITACQMDIKVDGLSSELMMEALNQAKAGRDHIRNEMSKT 548
Query: 238 IS 239
I+
Sbjct: 549 IA 550
Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats.
Identities = 48/237 (20%), Positives = 81/237 (34%), Gaps = 33/237 (13%)
Query: 3 LSGRQENQMREISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHG 57
GR EIS+ ++K A+GS V+ GDT LL T E V + +
Sbjct: 14 PDGR------EISIETGKLAKQADGSVEVRMGDTILLATVVSNKEAREGVDFLPMSVDYQ 67
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
A G +P R G+ R++ RALR + Q++I
Sbjct: 68 EKFASSGKIPGGFLKR------EGKLSDYEVLTSRLVDRALRPLFPSDYHAETQVMIQLF 121
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
++ + A A AL ++ + G + G I++
Sbjct: 122 SLEENDLPDALAALAASAALTASDIPFAG-------------PISEVRVGRVNGEMIINP 168
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
+ + D+D T +I+ V+ E S+ +N A + I + Q
Sbjct: 169 NSKQLEESDIDMIVAATID-NIMMVE--GELKEISEQEMVEAINFAHESIKLQCQAQ 222
>gi|312885115|ref|ZP_07744800.1| polynucleotide phosphorylase/polyadenylase [Vibrio caribbenthicus
ATCC BAA-2122]
gi|309367215|gb|EFP94782.1| polynucleotide phosphorylase/polyadenylase [Vibrio caribbenthicus
ATCC BAA-2122]
Length = 708
Score = 151 bits (380), Expect = 1e-34, Method: Composition-based stats.
Identities = 43/242 (17%), Positives = 93/242 (38%), Gaps = 18/242 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR+++ +R + + V GS L G+T L TATL + ++ + K
Sbjct: 316 RIDGREKDMVRALDVRTGVLPRTHGSSLFTRGETQALVTATLGTQRDAQIIDELTGEKKD 375
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P G + R+ G + R +++++ + + +
Sbjct: 376 HFLLHYNFPPYCVGETGFVGSPKRREIGHGKL----AKRGIQAIMPSVDEFPYTVRVVSE 431
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ G +AL D ++ + V +G + +
Sbjct: 432 ITESNGSSSMASVCGTSLALMDAGVPIKSSVAGIAMGLVKEGDDFVVLSD---------I 482
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T++G I +Q + +++ LN A+ ++ + +
Sbjct: 483 LGDEDHLGDMDFKVAGTNTG-ITALQMDIKIEGITKEIMQIALNQAQGARKHILSVMDEA 541
Query: 238 IS 239
IS
Sbjct: 542 IS 543
Score = 89.9 bits (221), Expect = 3e-16, Method: Composition-based stats.
Identities = 33/228 (14%), Positives = 71/228 (31%), Gaps = 27/228 (11%)
Query: 14 ISLTRRV-SKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKHGWITAEYGMLPR 68
++L V ++ A + +V DT + + + E + + T G +P
Sbjct: 17 VTLETGVIARQATAAVMVTMDDTAVFVSVVGKKEAVEGQDFFPLTVNYQERTYAAGKIPG 76
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
R GR R+I R +R + + Q+I + D
Sbjct: 77 GFFKR------EGRPSEGETLTARLIDRPIRPLFPDAFKNEVQVIATVVSVNPDVQPDIP 130
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
+ G A G + A G + G +++ E + +D
Sbjct: 131 TMIGTSAA-------------LAISGIPFNGPIGAARVGHIDGQLVLNPSNTELESSKLD 177
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
T ++ V+ +E +++ + + D+ +I +
Sbjct: 178 LVVAGT-DSAVLMVE--SEADNLTEEEMLSAVVFGHDQQQVVINAINE 222
>gi|187610327|sp|Q1QS60|PNP_NITHX RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
Length = 720
Score = 151 bits (380), Expect = 1e-34, Method: Composition-based stats.
Identities = 47/243 (19%), Positives = 92/243 (37%), Gaps = 18/243 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +R I V A GS L G+T + TL +E+ + T
Sbjct: 316 RIDGRDAKTVRNILAEVGVLPRAHGSALFTRGETQAMVVTTLGTGEDEQYIDALSGTYKE 375
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + + R+ G + RA+ V+ I + +
Sbjct: 376 TFLLHYNFPPYSVGETGRLGSTKRREIGHGKL----AWRAIHPVLPPHHEFPYTIRVVSE 431
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ GA ++L D ++ + + +L+G A+ +
Sbjct: 432 ITESNGSSSMASVCGASLSLMDAGVPLKRPTAGIAMGLILEGSRYAVLSD---------I 482
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T+ G I +Q + A +++ L A++ ++
Sbjct: 483 LGDEDHLGDMDFKVAGTEVG-ISSLQMDIKIAGITEEIMKVALAQAREGRIHILGEMAKA 541
Query: 238 ISN 240
++N
Sbjct: 542 LTN 544
Score = 111 bits (277), Expect = 9e-23, Method: Composition-based stats.
Identities = 36/235 (15%), Positives = 76/235 (32%), Gaps = 28/235 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTKHGWITAEYGML 66
R + L +++ A+G+ + +G+T +L T T E V + T G +
Sbjct: 14 RPLKLETGKIARQADGAVVATYGETVVLATVVAAKTPREGVDFLPLTVDYQEKTYAAGRI 73
Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
P R GR + + R+I R +R + Q+I+ +
Sbjct: 74 PGGYFKR------EGRPSEKETLVSRLIDRPVRPLFADGWRNETQVIVTVLSHDMENDPD 127
Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
A+ A A +G + A G + +++ E
Sbjct: 128 VLAMVAASAA-------------LTLSGAPFRGPIGAARVGFMNDEYVLNPTLDEMVDTQ 174
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
++ T ++ V+ A+ S+D + +I + ++ +
Sbjct: 175 LELVVAGTAD-AVLMVESEAKE--LSEDIMLGAVMFGHRHFQPVINAIIE-LAEK 225
>gi|323491486|ref|ZP_08096669.1| polynucleotide phosphorylase/polyadenylase [Vibrio brasiliensis LMG
20546]
gi|323314270|gb|EGA67351.1| polynucleotide phosphorylase/polyadenylase [Vibrio brasiliensis LMG
20546]
Length = 710
Score = 151 bits (380), Expect = 1e-34, Method: Composition-based stats.
Identities = 43/242 (17%), Positives = 91/242 (37%), Gaps = 18/242 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR+++ +R + + V GS L G+T L TATL + ++ + +
Sbjct: 316 RIDGREKDMVRALDVRTGVLPRTHGSSLFTRGETQALVTATLGTQRDAQIIDELTGERKD 375
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P G + R+ G + R + +V+ + + +
Sbjct: 376 HFLLHYNFPPYCVGETGFVGSPKRREIGHGKL----AKRGIAAVMPSVDEFPYTVRVVSE 431
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ G +AL D ++ + V +G + +
Sbjct: 432 ITESNGSSSMASVCGTSLALMDAGVPIKASVAGIAMGLVKEGDDFVVLSD---------I 482
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T+ G I +Q + +++ LN A+ ++ + +
Sbjct: 483 LGDEDHLGDMDFKVAGTNEG-ITALQMDIKIEGITKEIMQIALNQAQGARKHILSVMDEA 541
Query: 238 IS 239
IS
Sbjct: 542 IS 543
Score = 88.7 bits (218), Expect = 7e-16, Method: Composition-based stats.
Identities = 36/228 (15%), Positives = 73/228 (32%), Gaps = 27/228 (11%)
Query: 14 ISLTRRV-SKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKHGWITAEYGMLPR 68
++L V ++ A + +V DT + + + E + + T G +P
Sbjct: 17 VTLETGVIARQATAAVMVTMDDTAVFVSVVGKKEAVEGQDFFPLTVNYQERTYAAGKIPG 76
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
R GR R+I R +R + + Q+I + D
Sbjct: 77 GFFKR------EGRPSEGETLTARLIDRPIRPLFPDAFKNEVQVIATVVSVNPDVQPDIV 130
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
+ G A G + A G + G +++ E T +D
Sbjct: 131 TMIGTSAA-------------LAISGIPFNGPIGAARVGHIDGQLVLNPSNTELETSKLD 177
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
T+S ++ V+ +E +++ A + D+ +I +
Sbjct: 178 LVVAGTES-AVLMVE--SEADNLTEEEMLAAVVYGHDQQQTVISAINE 222
>gi|310658988|ref|YP_003936709.1| polynucleotide phosphorylase/polyadenylase [Clostridium sticklandii
DSM 519]
gi|308825766|emb|CBH21804.1| polynucleotide phosphorylase/polyadenylase [Clostridium
sticklandii]
Length = 699
Score = 151 bits (380), Expect = 1e-34, Method: Composition-based stats.
Identities = 44/243 (18%), Positives = 84/243 (34%), Gaps = 18/243 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56
+R R ++R I V GS L G T +++ T + ++ + +
Sbjct: 311 IRPDNRMHEEIRPIWSEAGVLPRTHGSALFTRGQTQVMSITTLGALGDVQILDGLSEEEE 370
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y S G R+ G RAL ++ I +
Sbjct: 371 KRYMHHYNFPAYSVGEARPSRGPGRREIGHGAL----AERALEPMLPSKEDFPYAIRVVS 426
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V+ ++G T A++ G+ ++L D ++D + + +G AI
Sbjct: 427 EVLSSNGSTSQASVCGSTLSLLDAGVPLKDMVAGIAMGLIKEGDDVAILSD--------- 477
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T+ G I +Q + A ++ L A+ ++ K
Sbjct: 478 IQGMEDFLGDMDFKVAGTEKG-ITAIQMDIKIAGIDEEILTRALEQARVGRLHILNEMKK 536
Query: 237 VIS 239
+S
Sbjct: 537 TLS 539
Score = 99 bits (247), Expect = 2e-19, Method: Composition-based stats.
Identities = 41/234 (17%), Positives = 88/234 (37%), Gaps = 27/234 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGML 66
R +S+ V++ A G+C+++ GDT +L A+ E + + + + G +
Sbjct: 12 RNLSVEIGKVAELANGACILRSGDTVVLVVASNSEKPREGIDFFPLSVDYEEKMYSAGKI 71
Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
P R GR RS R+I R +R + Q++ + +
Sbjct: 72 PGGFIKR------EGRPSERSILTSRLIDRPIRPLFPKGYRNDVQVVATVLSMDQNSNPD 125
Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
T A+ G+ S G ++S G++ G I++ D + +
Sbjct: 126 TMAMIGS-------------SIALSISSIPFNGPTGSVSVGLIDGEFIINPDLDQRAKSQ 172
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
+ T I+ V+ + S+D + A + I ++ ++++++
Sbjct: 173 MYLVVSGTKE-AIMMVEAGSSE--ISEDTMLKAILFAHEEIKKIVGFIEEIVND 223
>gi|302878493|ref|YP_003847057.1| polyribonucleotide nucleotidyltransferase [Gallionella
capsiferriformans ES-2]
gi|302581282|gb|ADL55293.1| polyribonucleotide nucleotidyltransferase [Gallionella
capsiferriformans ES-2]
Length = 701
Score = 151 bits (380), Expect = 1e-34, Method: Composition-based stats.
Identities = 44/242 (18%), Positives = 98/242 (40%), Gaps = 18/242 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +R+I++ V GS L G+T + ATL + + ++
Sbjct: 311 RIDGRDTRTVRQITIRNGVLARTHGSALFTRGETQAVVVATLGSMRDAQKVDALQGEFTD 370
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P +TG + + R+ G + RAL +V+ + I +
Sbjct: 371 RFMLHYNFPPFATGETGRVGSPKRREIGHGRL----AKRALVAVLPSEEDFGYAVRIVSE 426
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ G +++ D ++ + + +G+ A+ +
Sbjct: 427 ITESNGSSSMASVCGGCLSMLDAGVPLKAHVAGIAMGLIKEGNRFAVLSD---------I 477
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D +++G I +Q + +++ A L+ AK+ ++ + K+
Sbjct: 478 LGDEDHLGDMDFKVAGSENG-ITALQMDIKINGITREIMQAALSQAKEGRLHILGIMKES 536
Query: 238 IS 239
+S
Sbjct: 537 MS 538
Score = 75.7 bits (184), Expect = 5e-12, Method: Composition-based stats.
Identities = 37/236 (15%), Positives = 74/236 (31%), Gaps = 43/236 (18%)
Query: 14 ISLTRR-VSKYAEGSCLVK------------FGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+++ +++ A G+ LV D + + + T
Sbjct: 15 LTIETGEIARQASGAVLVSLDDTVVLVTVVGRKDAK--------PEQDFFPLTVDYQEKT 66
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
G +P S R GR + R+I R LR + S QII
Sbjct: 67 YAAGKIPGSFFKR------EGRASEKEILTSRLIDRPLRPLFPESFYNEVQIIATVMSSD 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
++ + ++ GA A +G +AA G G +++
Sbjct: 121 SEIDSDIPSLIGASAA-------------LAISGIPFEGPIAAARVGYANGQYLLNPTKT 167
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
E T +D T ++ V+ A++ S++ + ++ +I +
Sbjct: 168 ELVTSQMDLVVAGT-DRAVLMVESEAQQ--LSEEVMLGAVMFGHEQFQIVINAINE 220
>gi|289676030|ref|ZP_06496920.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas syringae
pv. syringae FF5]
Length = 472
Score = 151 bits (380), Expect = 1e-34, Method: Composition-based stats.
Identities = 45/243 (18%), Positives = 92/243 (37%), Gaps = 18/243 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +R +++ V GS L G+T L ATL + ++ + K
Sbjct: 87 RIDGRDTRTVRPLNIEVGVLPKTHGSALFTRGETQALVVATLGTARDAQLLDTLEGEKKD 146
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + R+ G + R++++++ + + I + +
Sbjct: 147 PFMLHYNFPPFSVGECGRMGGAGRREIGHGRL----ARRSVQAMLPGADVFPYTIRVVSE 202
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ GA +AL D M+ + V +G AI +
Sbjct: 203 ITESNGSSSMASVCGASLALMDAGVPMKAPVAGIAMGLVKEGEKFAILTD---------I 253
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T G + +Q + +++ L A + +++ +
Sbjct: 254 LGDEDHLGDMDFKVAGTSKG-VTALQMDIKIKGITEEIMEIALGQALEARLNILGQMNQI 312
Query: 238 ISN 240
I
Sbjct: 313 IGQ 315
>gi|27365068|ref|NP_760596.1| polynucleotide phosphorylase/polyadenylase [Vibrio vulnificus
CMCP6]
gi|320155451|ref|YP_004187830.1| polyribonucleotide nucleotidyltransferase [Vibrio vulnificus
MO6-24/O]
gi|81448563|sp|Q8DBU9|PNP_VIBVU RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|187611443|sp|Q7MI20|PNP_VIBVY RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|27361214|gb|AAO10123.1| Polyribonucleotide nucleotidyltransferase [Vibrio vulnificus CMCP6]
gi|319930763|gb|ADV85627.1| polyribonucleotide nucleotidyltransferase [Vibrio vulnificus
MO6-24/O]
Length = 708
Score = 151 bits (380), Expect = 1e-34, Method: Composition-based stats.
Identities = 44/242 (18%), Positives = 91/242 (37%), Gaps = 18/242 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR+++ +R + + V GS L G+T L TATL + ++ + K
Sbjct: 316 RIDGREKDMVRALDVRTGVLPRTHGSSLFTRGETQALVTATLGTQRDAQIIDELTGEKKD 375
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
+ Y P G + R+ G + R + +V+ + + +
Sbjct: 376 YFLLHYNFPPYCVGETGFVGSPKRREIGHGKL----AKRGIAAVMPSIDEFPYTVRVVSE 431
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ G +AL D ++ + V +G + +
Sbjct: 432 ITESNGSSSMASVCGTSLALMDAGVPIKASVAGIAMGLVKEGDDFVVLSD---------I 482
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T +G I +Q + +++ LN A+ ++ +
Sbjct: 483 LGDEDHLGDMDFKVAGTSTG-ITALQMDIKIEGITKEIMQIALNQAQGARKHILSVMDQA 541
Query: 238 IS 239
IS
Sbjct: 542 IS 543
Score = 92.2 bits (227), Expect = 5e-17, Method: Composition-based stats.
Identities = 34/228 (14%), Positives = 73/228 (32%), Gaps = 27/228 (11%)
Query: 14 ISLTRRV-SKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----HGWITAEYGMLPR 68
++L V ++ A + +V DT + + +++ + T G +P
Sbjct: 17 VTLETGVIARQATAAVMVTMDDTAVFVSVVGKKEAVPGQDFFPLTVNYQERTYAAGKIPG 76
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
R GR R+I R +R + Q+I + D
Sbjct: 77 GFFKR------EGRPSEGETLTARLIDRPIRPLFPEGFNNEVQVIATVVSVNPDVQPDIP 130
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
+ G A G + A G + G +++ E + +D
Sbjct: 131 TMIGTSAA-------------LAISGIPFNGPIGAARVGHIDGQLVLNPSNTELNASRLD 177
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
T+S ++ V+ +E +++ + + D+ +IK +
Sbjct: 178 LVVAGTES-AVLMVE--SEADNLTEEEMLSAVVFGHDQQQAVIKAINE 222
>gi|229544442|ref|ZP_04433500.1| Polyribonucleotide nucleotidyltransferase [Bacillus coagulans 36D1]
gi|229324927|gb|EEN90604.1| Polyribonucleotide nucleotidyltransferase [Bacillus coagulans 36D1]
Length = 704
Score = 151 bits (380), Expect = 1e-34, Method: Composition-based stats.
Identities = 46/244 (18%), Positives = 84/244 (34%), Gaps = 18/244 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56
+R GR+ +++R +S V GS L G T L+ T + ++ + +
Sbjct: 315 IRPDGRKIDEIRPLSSEVGVLPRTHGSGLFTRGQTQALSICTLGALGDVQILDGLGIEES 374
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y S G R+ G RAL V+ I +
Sbjct: 375 KRFMHHYNFPSFSVGETGPMRGPGRREIGHGALG----ERALEPVIPDEKEFPYTIRLVS 430
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V++++G T A+I + +A+ D ++ + V G + D
Sbjct: 431 EVLESNGSTSQASICASTLAMMDAGIPIKAPVAGIAMGLVKSGE---------HYTILTD 481
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T G + +Q + A S++ L A+ ++
Sbjct: 482 IQGMEDHLGDMDFKVAGTSKG-VTALQMDIKIAGLSREILEEALQQARKGRMQILDHMMS 540
Query: 237 VISN 240
IS
Sbjct: 541 TISK 544
Score = 117 bits (293), Expect = 1e-24, Method: Composition-based stats.
Identities = 41/233 (17%), Positives = 86/233 (36%), Gaps = 26/233 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATL---EEKVPMWIRNTKHGWITAEYGMLP 67
R +++ ++K A G+ LV++G+T +L+TAT + V + + G +P
Sbjct: 15 RPLTVEIGQLAKQANGAALVRYGETAVLSTATASKEPKNVDFFPLTVNYEERLYAVGKIP 74
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R GR ++ R+I R +R + Q++ + D
Sbjct: 75 GGFIKR------EGRPSEKAILSSRLIDRPIRPLFADGFRNEVQVVSMVMSVDQDCTPEM 128
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
AA+ G+ +A +G +A + G + G +++ + D+
Sbjct: 129 AAMLGSSLA-------------LSVSDIPFEGPIAGVIVGRVDGKFLINPTVEQMEKSDI 175
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
T I V+ A+ ++ + + I LI Q+ +++
Sbjct: 176 HLTVAGTKD-AINMVEAGAKEVP--EEVMLEAIMFGHEEIKRLIAFQEKIVAE 225
>gi|91789120|ref|YP_550072.1| polynucleotide phosphorylase/polyadenylase [Polaromonas sp. JS666]
gi|123355467|sp|Q127W8|PNP_POLSJ RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|91698345|gb|ABE45174.1| Polyribonucleotide nucleotidyltransferase [Polaromonas sp. JS666]
Length = 707
Score = 150 bits (379), Expect = 1e-34, Method: Composition-based stats.
Identities = 43/243 (17%), Positives = 88/243 (36%), Gaps = 18/243 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +R I + V GS L G+T L TL + + +
Sbjct: 317 RIDGRDTRTVRAIEIRNSVLPRTHGSALFTRGETQALVVTTLGTERDAQRIDALSGDYED 376
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y M P +TG + + R+ G + RAL +V+ + + +
Sbjct: 377 RFMLHYNMPPFATGETGRVGSPKRREIGHGRL----AKRALIAVLPTKEEFPYTMRVVSE 432
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ G ++L D M+ + + + + A+ +
Sbjct: 433 ITESNGSSSMASVCGGCLSLMDAGVPMKAHVAGIAMGLIKEENRFAVLTD---------I 483
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T G I +Q + +++ L AK+ ++ ++
Sbjct: 484 LGDEDHLGDMDFKVAGTTFG-ITALQMDIKIQGITKEIMQVALAQAKEARMHILGKMQEA 542
Query: 238 ISN 240
+
Sbjct: 543 MGE 545
Score = 91.4 bits (225), Expect = 9e-17, Method: Composition-based stats.
Identities = 33/234 (14%), Positives = 75/234 (32%), Gaps = 31/234 (13%)
Query: 13 EISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT----KHGWITAEYGMLP 67
++++ V++ A G+ +V T +L T + + T G +P
Sbjct: 17 KVTMETGEVARQASGAVVVDMDGTVVLATVVAKTDAKPGQDFFPLTVDYLEKTYAAGRIP 76
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
S R GR R+I R +R + Q++I + +
Sbjct: 77 GSFFKR------EGRPSEFETLTSRLIDRPIRPLFPEGFFNEVQVVIHVLSLNPEVEGDI 130
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
A+ + A G + A + G +++ + +
Sbjct: 131 PALIASSAA-------------LSISGIPFNGPIGAARVAYVDGQYVLNPGKTQLKDSKM 177
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKD----RIADLIKLQKDV 237
D T++ ++ V+ A++ S++ + + I + +L +D
Sbjct: 178 DLVVAGTEA-AVLMVESEAQQ--LSEEIMLGAVVFGHEQANIAINAIHELVRDA 228
>gi|170078680|ref|YP_001735318.1| ribonuclease PH [Synechococcus sp. PCC 7002]
gi|169886349|gb|ACB00063.1| ribonuclease PH [Synechococcus sp. PCC 7002]
Length = 240
Score = 150 bits (379), Expect = 1e-34, Method: Composition-based stats.
Identities = 97/239 (40%), Positives = 143/239 (59%), Gaps = 6/239 (2%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
RL R +Q+R +K+A+ S L GDT +L T ++EE VP ++R++ GW+TA
Sbjct: 5 RLDNRFFDQLRPFKFELDFTKFAQASVLTSCGDTKVLCTVSVEEGVPPFLRDSGQGWLTA 64
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
EY M+P +T R +R + GR+QEIQR+IGR+LR+ +DL ALG R I ID DV+QA
Sbjct: 65 EYRMMPGATPERQRR--EFMKLSGRTQEIQRLIGRSLRAAIDLKALGERTITIDADVLQA 122
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
DGGTRT AITG +V L + + + + VAAIS G++ G +DL+Y E
Sbjct: 123 DGGTRTTAITGGYVGLAIACERLVKAGILGKSPII--APVAAISVGLIAGQAYLDLNYLE 180
Query: 182 DSTIDVDANFVM--TDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
D DVD N VM +++EVQG+AE ++++ +L++A+ I ++ LQ I
Sbjct: 181 DVAADVDFNVVMIGGQGLNLIEVQGTAEAGSYNRAQLNQILDVAEKGIQTIMTLQTKAI 239
>gi|88808003|ref|ZP_01123514.1| Ribonuclease PH [Synechococcus sp. WH 7805]
gi|88788042|gb|EAR19198.1| Ribonuclease PH [Synechococcus sp. WH 7805]
Length = 340
Score = 150 bits (379), Expect = 1e-34, Method: Composition-based stats.
Identities = 99/240 (41%), Positives = 149/240 (62%), Gaps = 4/240 (1%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R GRQ +++R ++ +A S +V+ G T +L + E+ VP W R+ GW++A
Sbjct: 105 RKDGRQASELRPFAVEWDPMGFALSSVIVRTGRTAVLCSVCHEQGVPRWRRDQGLGWLSA 164
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
EY +LP ST R +RE + GR+QEIQR+IGR+LR+ + + ALG +++DCDVIQA
Sbjct: 165 EYRLLPGSTPERQRREW--LKLSGRTQEIQRLIGRSLRAALSMEALGENTLLVDCDVIQA 222
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
D GTRTA+ITGAW+ALH + + ++ VAA+S G+L G ++DLDY E
Sbjct: 223 DAGTRTASITGAWLALHHACASLVS--QGLIPANPVRAQVAAVSVGLLQGEALLDLDYSE 280
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
DS DVD N VM SG ++E+QG+AE ATFS+ +L+ A+ + L++ Q + + +
Sbjct: 281 DSQADVDLNVVMNASGELLELQGTAEGATFSRQQLNLLLDRAEPGLKQLMRAQNEALRTQ 340
>gi|255311683|ref|ZP_05354253.1| polynucleotide phosphorylase/polyadenylase [Chlamydia trachomatis
6276]
Length = 695
Score = 150 bits (379), Expect = 1e-34, Method: Composition-based stats.
Identities = 47/244 (19%), Positives = 89/244 (36%), Gaps = 18/244 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT--LEEKVPMWIRNTKHG- 57
+R+ GR ++R IS+ GSCL G+T + T E + G
Sbjct: 314 IRVDGRTTTEIRPISIETPFLPRTHGSCLFTRGETQSMAVCTLGGENMAQRFEDLNGDGA 373
Query: 58 -WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
+Y P S G + + R+ G + +AL V+ ++ I ++
Sbjct: 374 ARFYLQYFFPPFSVGEVGRIGSPGRREIGHGKL----AEKALSHVLPETSRFPYIIRLES 429
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
++ +++G + A++ G +AL D ++ + +L A I
Sbjct: 430 NITESNGSSSMASVCGGCLALMDAGVPIKAPVAGIAMGLILDRDQAIILSD--------- 480
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T G I Q + + L AK + ++ L
Sbjct: 481 ISGIEDHLGDMDFKVAGTAKG-ITAFQMDIKIEGITHKIMEQALAQAKQGRSHILNLMTQ 539
Query: 237 VISN 240
V+++
Sbjct: 540 VLTS 543
Score = 90.7 bits (223), Expect = 1e-16, Method: Composition-based stats.
Identities = 37/235 (15%), Positives = 73/235 (31%), Gaps = 29/235 (12%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLL---TTATLEEKVPMWIRNTKHGWITAEYGMLPRS 69
+ +++ A G+ LVK +T + A+L E V + + G
Sbjct: 16 LIFETGKIARQASGAVLVKMNETWVFSSACAASLSEAVDFLPFRVDYQEKFSSAGRTSGG 75
Query: 70 TGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAA 129
R GR R + R++ R+LR + Q++ A
Sbjct: 76 FLKR------EGRPSEREILVSRLMDRSLRPSFPNRLMQDIQVLSYVWSYDGKTLPDPLA 129
Query: 130 ITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDA 189
I GA A VA + G++ G +++ E S +D
Sbjct: 130 ICGASAA-------------LAISEVPQNCIVAGVRVGLVGGKWVINPTRDELSASKLDL 176
Query: 190 NFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK---DVISNE 241
T S ++ ++ +++ + + IA + + I +
Sbjct: 177 VMAGTAS-AVLMIE--GHCDFLTEEQVLEAIAFGQTYIAKICDAIEAWQKAIGKQ 228
>gi|309389238|gb|ADO77118.1| polyribonucleotide nucleotidyltransferase [Halanaerobium praevalens
DSM 2228]
Length = 696
Score = 150 bits (379), Expect = 1e-34, Method: Composition-based stats.
Identities = 48/244 (19%), Positives = 84/244 (34%), Gaps = 18/244 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
+R GR +++R I A GS + G+T L+ TL +E+ + +
Sbjct: 310 IRPDGRDYDEIRPIWAEVDFVPRAHGSGVFTRGETQALSVLTLGSARDEQTLFGLGENET 369
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y G + R+ G +AL V+ I I
Sbjct: 370 KRYMHHYNFPSFCVGETSPMRSPGRREIGHGTLG----EKALLPVIPSEEEFPYTIRIVS 425
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V++++G + A+I G+ +AL ++ + + K I
Sbjct: 426 EVLESNGSSSQASICGSSLALMAAGVPIKAPVAGIAMGLMKKDDDVVILSD--------- 476
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T++G I +Q + S D L AK ++ D
Sbjct: 477 IQGFEDFNGDMDFKVAGTEAG-ITALQMDIKLKGLSYDILEEALEKAKKGRMHIMGKMLD 535
Query: 237 VISN 240
VI
Sbjct: 536 VIPE 539
Score = 103 bits (256), Expect = 2e-20, Method: Composition-based stats.
Identities = 44/225 (19%), Positives = 80/225 (35%), Gaps = 26/225 (11%)
Query: 16 LTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVP---MWIRNTKHGWITAEYGMLPRSTG 71
++K A GS +V+ GD+ +L TA ++E P + + G +P S
Sbjct: 15 FQTGKLAKQANGSVVVRCGDSQVLVTAVMDEPRPGMNYFPLMVNYEERVYAIGQIPGSVM 74
Query: 72 NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAIT 131
R GR + R+I R++R + QI+ + D A+
Sbjct: 75 RR------EGRPRDEATLAARVIDRSIRPLFPEGFRHDVQIVATILSVDDDHDPEVLALN 128
Query: 132 GAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANF 191
GA A G + + ++ I++ + E D+D
Sbjct: 129 GASAA-------------LTLSDIPFAGPIGGVKVALVDEQIIINPNEEERENSDLDLVV 175
Query: 192 VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ I+ V+ SA S+ + +A I +I LQ++
Sbjct: 176 AGSKD-AIMMVEASANE--VSEATVLEAMKVAHAEIKKIISLQEE 217
>gi|307611640|emb|CBX01326.1| polynucleotide phosphorylase [Legionella pneumophila 130b]
Length = 729
Score = 150 bits (379), Expect = 1e-34, Method: Composition-based stats.
Identities = 44/240 (18%), Positives = 89/240 (37%), Gaps = 10/240 (4%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R+ GR +R IS+ + + GSCL G+T + ATL + I + G
Sbjct: 314 RIDGRDHRTVRPISVRTKFLERTHGSCLFTRGETQAIVVATLGNERDAQILDGISGESRD 373
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
+ + V G R R+ RAL +V+ + + I ++ ++
Sbjct: 374 RFMLHYNFPPYSVGETGQVGSPKRREIGHGRLAKRALMAVLPDANEFPYVLRIVSEITES 433
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
+G + A + G +AL D ++ + + +G A+ + E
Sbjct: 434 NGSSSMATVCGTSLALMDAGVPLKAPVAGVAMGLIKEGDRYAVLTD---------ILGDE 484
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
D D+D T+ G I +Q + + + + L A + ++ + + ++
Sbjct: 485 DHLGDMDFKVAGTEKG-ITALQMDIKISGITNEIMERALEQALEGRTHILGVMNNALAEH 543
Score = 100 bits (248), Expect = 2e-19, Method: Composition-based stats.
Identities = 40/235 (17%), Positives = 77/235 (32%), Gaps = 28/235 (11%)
Query: 13 EISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGMLP 67
++ L V++ A+G+ + T +L T E + + G +P
Sbjct: 14 KLILETGEVARQADGAVMASMNGTQVLVTVVWKKDGGESNDFFPLTVNYQEKFYAIGKIP 73
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R GR I R+I R +R + + QII + +
Sbjct: 74 GGFNKR------EGRPSDNETLISRLIDRPIRPLFPDNFFNEVQIIATVLSLNPEVSPDI 127
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
A+ GA A G + A G G +++ E +
Sbjct: 128 IAMIGASAA-------------LSISGVPFNGPIGAARVGYKDGVYLLNPSRKEQEESKL 174
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNEV 242
D T I+ V+ A+ S+D + + + ++IK ++ ++ +V
Sbjct: 175 DLVIAGTKD-AILMVESEAQE--LSEDIMRGAMLYGHEMMKNVIKSIEE-LARDV 225
>gi|225181391|ref|ZP_03734835.1| Polyribonucleotide nucleotidyltransferase [Dethiobacter
alkaliphilus AHT 1]
gi|225167972|gb|EEG76779.1| Polyribonucleotide nucleotidyltransferase [Dethiobacter
alkaliphilus AHT 1]
Length = 721
Score = 150 bits (379), Expect = 1e-34, Method: Composition-based stats.
Identities = 45/244 (18%), Positives = 88/244 (36%), Gaps = 18/244 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56
+R GR+ +++R ++ + GS L G T +L T E + + +
Sbjct: 310 LRPDGRKSDEIRPVTSEVGILPRTHGSGLFTRGQTQVLNVCTLGAPGEVQRLDGLGLEES 369
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P S G S R G +AL V+ I +
Sbjct: 370 KRYMHHYNFPPYSVGEAGFMRGASRRDIGHGAL----AEKALVPVLPSEEDFPYTIRLVS 425
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V++++G + ++ G+ +++ D ++ + + +++G AI
Sbjct: 426 EVVESNGSSSMGSVCGSTLSMMDAGVPLKKPVSGVAMGLIVEGDDVAILSD--------- 476
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T G I +Q + S++ L AKD ++ +
Sbjct: 477 IQGMEDFLGDMDFKVAGTPEG-ITALQMDIKIKGLSREILTKALQQAKDGYMHIMNKMTE 535
Query: 237 VISN 240
VI
Sbjct: 536 VIPE 539
Score = 111 bits (278), Expect = 6e-23, Method: Composition-based stats.
Identities = 44/234 (18%), Positives = 88/234 (37%), Gaps = 27/234 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKHGWITAEYGML 66
RE+S+ ++K A GS ++++GDT +L+TAT E V + + G +
Sbjct: 11 RELSIETGRIAKQASGSVVLRYGDTVVLSTATASAEPREGVDFFPMTVDYEERLYAVGKI 70
Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
P R GR ++ R+ R R + + I+ + D
Sbjct: 71 PGGFIKR------EGRPTEKAILSARLTDRPCRPLFPKGFRNAVHIVTTVLSVDQDNPPE 124
Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
+I GA A + G ++A+ G + G P+++ + +
Sbjct: 125 VLSIVGASAA-------------LSISNIPFAGPLSAVVVGWIDGKPVINPNQEQAEQSK 171
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
+ T G I+ V+ A ++D + D +++ LQ+ +++
Sbjct: 172 LHLVVASTKDG-IMMVEAGAHE--LTEDEVLEAIMAGDDANKEIVALQEQMVAE 222
>gi|239636247|ref|ZP_04677249.1| polyribonucleotide nucleotidyltransferase [Staphylococcus warneri
L37603]
gi|239597602|gb|EEQ80097.1| polyribonucleotide nucleotidyltransferase [Staphylococcus warneri
L37603]
Length = 598
Score = 150 bits (379), Expect = 1e-34, Method: Composition-based stats.
Identities = 43/244 (17%), Positives = 88/244 (36%), Gaps = 18/244 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56
+R GR+ +++R + + A GS L G T L+ T + ++ + +
Sbjct: 217 IRPDGRKPDEIRPLESEVGLLPRAHGSGLFTRGQTQALSVLTLGALGDYQLIDGLGPEEE 276
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y S G A R+ G RAL+ ++ ++ + I
Sbjct: 277 KRFMHHYNFPNFSVGETGPVRAPGRREIGHGALG----ERALKYIIPDTSDFPYTVRIVS 332
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V++++G + A+I G+ +AL D ++ + V + + D
Sbjct: 333 EVLESNGSSSQASICGSTLALMDAGVPIKAPVAGIAMGLVTRED---------SYTILTD 383
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED+ D+D T G I +Q + +++ L A+ ++
Sbjct: 384 IQGMEDALGDMDFKVAGTKDG-ITAIQMDIKIDGLTREVIEEALEQARQGRLAIMDHMLQ 442
Query: 237 VISN 240
I
Sbjct: 443 TIDQ 446
Score = 47.9 bits (112), Expect = 0.001, Method: Composition-based stats.
Identities = 20/138 (14%), Positives = 41/138 (29%), Gaps = 16/138 (11%)
Query: 101 VVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGH 160
+ QI+ D AA+ G+ +A G
Sbjct: 1 MFPKGYKHDVQIMNIVLSADPDCSPEMAAMIGSSMA-------------LSVSDIPFLGP 47
Query: 161 VAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAML 220
+A ++ G + G +++ E +D + V+ A ++ +
Sbjct: 48 IAGVNVGYVDGKYVINPTVAEKEVSRLDLEVAGHKD-AVNMVEAGASE--ITESEMLEAI 104
Query: 221 NLAKDRIADLIKLQKDVI 238
D I L+ Q+ +I
Sbjct: 105 FFGHDEIKRLVAFQQGII 122
>gi|223985743|ref|ZP_03635787.1| hypothetical protein HOLDEFILI_03093 [Holdemania filiformis DSM
12042]
gi|223962253|gb|EEF66721.1| hypothetical protein HOLDEFILI_03093 [Holdemania filiformis DSM
12042]
Length = 731
Score = 150 bits (379), Expect = 1e-34, Method: Composition-based stats.
Identities = 41/244 (16%), Positives = 86/244 (35%), Gaps = 17/244 (6%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56
+R GR +++R ++ + GS + G+T +++ T + ++ + +
Sbjct: 318 IRPDGRAVDELRPLNSQVDLLPRVHGSAMFTRGETQVMSACTLGALGDNQIIDDLTEIET 377
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P S G + + R+ G RAL +V+ I +
Sbjct: 378 KRFMHHYNFPPYSVGETGRMGSPGRREIGHGALG----ERALSAVIPSEEEFPYTIRLVA 433
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V++++G + A+I +AL ++ + + + D
Sbjct: 434 EVLESNGSSSQASICAGTMALMSAGVPIKAPVAGVAMGLIKTSDE--------HYTVLTD 485
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T G I +Q + ++ L AK A+++
Sbjct: 486 IQGMEDHYGDMDFKVAGTPKG-ITALQMDIKIDGINRAILEEALAQAKKGRAEIMANMMA 544
Query: 237 VISN 240
IS
Sbjct: 545 AISE 548
Score = 109 bits (273), Expect = 3e-22, Method: Composition-based stats.
Identities = 46/233 (19%), Positives = 82/233 (35%), Gaps = 26/233 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATL---EEKVPMWIRNTKHGWITAEYGMLP 67
R +++ ++K A G+ +V++ DT +L+TAT + + G +P
Sbjct: 13 RNLTIETGEIAKQAGGAVVVRYQDTVVLSTATANHTPKDSDFFPLTVSFEEKLYSVGKIP 72
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R GR + RMI R +R + Q++ + D
Sbjct: 73 GGFLRR------EGRPSEHATLTARMIDRPIRPLFAEGFRNEVQVVNTVLSVDQDCSAEM 126
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
AA+ GA AL G +A + G + G +++ E D+
Sbjct: 127 AAMFGASCALC-------------ISDIPFNGPIAGVIVGRVDGKFVINPSVEESEKSDI 173
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
T I V+ A+ S++ L D I L + Q+ +I+
Sbjct: 174 HLTVAGTKD-AINMVEAGAKE--VSEEEMIDALMFGHDHIKMLCEFQEQIIAK 223
>gi|92115668|ref|YP_575397.1| polynucleotide phosphorylase/polyadenylase [Nitrobacter
hamburgensis X14]
gi|91798562|gb|ABE60937.1| Polyribonucleotide nucleotidyltransferase [Nitrobacter hamburgensis
X14]
Length = 748
Score = 150 bits (379), Expect = 1e-34, Method: Composition-based stats.
Identities = 47/243 (19%), Positives = 92/243 (37%), Gaps = 18/243 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +R I V A GS L G+T + TL +E+ + T
Sbjct: 344 RIDGRDAKTVRNILAEVGVLPRAHGSALFTRGETQAMVVTTLGTGEDEQYIDALSGTYKE 403
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + + R+ G + RA+ V+ I + +
Sbjct: 404 TFLLHYNFPPYSVGETGRLGSTKRREIGHGKL----AWRAIHPVLPPHHEFPYTIRVVSE 459
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ GA ++L D ++ + + +L+G A+ +
Sbjct: 460 ITESNGSSSMASVCGASLSLMDAGVPLKRPTAGIAMGLILEGSRYAVLSD---------I 510
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T+ G I +Q + A +++ L A++ ++
Sbjct: 511 LGDEDHLGDMDFKVAGTEVG-ISSLQMDIKIAGITEEIMKVALAQAREGRIHILGEMAKA 569
Query: 238 ISN 240
++N
Sbjct: 570 LTN 572
Score = 111 bits (276), Expect = 1e-22, Method: Composition-based stats.
Identities = 36/235 (15%), Positives = 76/235 (32%), Gaps = 28/235 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTKHGWITAEYGML 66
R + L +++ A+G+ + +G+T +L T T E V + T G +
Sbjct: 42 RPLKLETGKIARQADGAVVATYGETVVLATVVAAKTPREGVDFLPLTVDYQEKTYAAGRI 101
Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
P R GR + + R+I R +R + Q+I+ +
Sbjct: 102 PGGYFKR------EGRPSEKETLVSRLIDRPVRPLFADGWRNETQVIVTVLSHDMENDPD 155
Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
A+ A A +G + A G + +++ E
Sbjct: 156 VLAMVAASAA-------------LTLSGAPFRGPIGAARVGFMNDEYVLNPTLDEMVDTQ 202
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
++ T ++ V+ A+ S+D + +I + ++ +
Sbjct: 203 LELVVAGTAD-AVLMVESEAKE--LSEDIMLGAVMFGHRHFQPVINAIIE-LAEK 253
>gi|319953765|ref|YP_004165032.1| polyribonucleotide nucleotidyltransferase [Cellulophaga algicola
DSM 14237]
gi|319422425|gb|ADV49534.1| Polyribonucleotide nucleotidyltransferase [Cellulophaga algicola
DSM 14237]
Length = 747
Score = 150 bits (379), Expect = 1e-34, Method: Composition-based stats.
Identities = 48/243 (19%), Positives = 81/243 (33%), Gaps = 20/243 (8%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
+RL GR+ +++R I GS + G+T L T TL +
Sbjct: 317 LRLDGRKTDEIRPIWCEIDYLPSTHGSAIFTRGETQALATVTLGTSRDANKIDMPSFEGE 376
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P TG S R+ G QR + + S + +
Sbjct: 377 ENFYLHYNFPPFCTGEARPLRGTSRREVGHGNLAQRGLKGMIPS------DCPYTVRVVS 430
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V++++G + A + +AL D M+ + + + G A+
Sbjct: 431 EVLESNGSSSMATVCAGTMALMDAGVKMKRPVSGIAMGLISDGDRYAVLSD--------- 481
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T G I Q + S + L A+D ++ D
Sbjct: 482 ILGDEDHLGDMDFKVTGTSEG-ITACQMDIKIKGLSYEILVNALKQARDGRLHILGKITD 540
Query: 237 VIS 239
IS
Sbjct: 541 TIS 543
Score = 100 bits (248), Expect = 2e-19, Method: Composition-based stats.
Identities = 33/232 (14%), Positives = 70/232 (30%), Gaps = 26/232 (11%)
Query: 7 QENQMREISLTRR-VSKYAEGSCLVKFGDTHLLTTA---TLEEKVPMWIRNTKHGWITAE 62
REIS+ ++K A GS +V+ G+ LL T + V + A
Sbjct: 11 DLGDGREISIETGKLAKQAHGSVVVQSGNCMLLCTVVSNYKQSDVDFLPLTVDYREKFAA 70
Query: 63 YGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQAD 122
G P R R R++ R LR + Q
Sbjct: 71 AGRYPGGFFKR------EARPSDGEVLTMRLVDRVLRPLFPKDYHAETQ----------- 113
Query: 123 GGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGED 182
++ + + + + + + ++ + G +++ +
Sbjct: 114 --VMIQLMSHDENVMPEAMAGLAASAAIQLSDFPFECAISEARVARVNGEFVINPTRAQL 171
Query: 183 STIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
+ D++ + ++ V+ E S++ + A + I I Q
Sbjct: 172 AESDLEMMI-GASADSVMMVE--GEMDEISEEVMADAIKFAHEAIKVQIAAQ 220
>gi|73662800|ref|YP_301581.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus
saprophyticus subsp. saprophyticus ATCC 15305]
gi|117940130|sp|Q49X62|PNP_STAS1 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|72495315|dbj|BAE18636.1| polyribonucleotide nucleotidyltransferase [Staphylococcus
saprophyticus subsp. saprophyticus ATCC 15305]
Length = 697
Score = 150 bits (379), Expect = 1e-34, Method: Composition-based stats.
Identities = 45/242 (18%), Positives = 88/242 (36%), Gaps = 18/242 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
+R GR+ +++R + V A GS L G T L+ TL E ++ + +
Sbjct: 318 IRPDGRKTDEIRPLESEVGVLPRAHGSGLFTRGQTQALSVLTLGSMSEYQILDGLGEEEQ 377
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y S G + R+ G RAL ++ + I
Sbjct: 378 KRFMHHYNFPNYSVGETGPVRSPGRREIGHGALG----ERALSHIIPDLKDFPYTVRIVS 433
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V++++G + A+I G+ +AL D ++ + V + + D
Sbjct: 434 EVLESNGSSSQASICGSTLALMDAGVPIKAPVAGIAMGLVTRDD---------SYTILTD 484
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED+ D+D T G I +Q + +++ L+ A++ ++
Sbjct: 485 IQGMEDALGDMDFKVAGTAEG-ITAIQMDIKIDGLTKEIIKEALDQAREGRLAILDHMLQ 543
Query: 237 VI 238
I
Sbjct: 544 TI 545
Score = 109 bits (271), Expect = 5e-22, Method: Composition-based stats.
Identities = 38/231 (16%), Positives = 80/231 (34%), Gaps = 26/231 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKV---PMWIRNTKHGWITAEYGMLP 67
R +++ ++K A G+ LV++GDT +L+TA ++ + + G +P
Sbjct: 15 RSLTIETGQLAKQANGAVLVRYGDTVVLSTAVASKEPRDGDFFPLMVNYEEKMYAAGKIP 74
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R GR + R+I R +R + QI+ D
Sbjct: 75 GGFKKR------EGRPSDEATLTARLIDRPIRPLFPKGYKYDVQIMNTVLSADPDCSPEM 128
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
AA+ G+ +A +G +A + G + G +++ + +
Sbjct: 129 AAMIGSSMA-------------LSVSDIPFQGPIAGVKVGYIDGEYVINPTVAQKEVSRL 175
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
D + V+ A ++ + I L+ Q++++
Sbjct: 176 DLEVAGHKD-AVNMVEAGASE--ITESEMLEAIFFGHSEIQRLVNFQQEIV 223
>gi|37680881|ref|NP_935490.1| polynucleotide phosphorylase/polyadenylase [Vibrio vulnificus
YJ016]
gi|37199630|dbj|BAC95461.1| polyribonucleotide nucleotidyltransferase [Vibrio vulnificus YJ016]
Length = 725
Score = 150 bits (379), Expect = 1e-34, Method: Composition-based stats.
Identities = 44/242 (18%), Positives = 91/242 (37%), Gaps = 18/242 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR+++ +R + + V GS L G+T L TATL + ++ + K
Sbjct: 333 RIDGREKDMVRALDVRTGVLPRTHGSSLFTRGETQALVTATLGTQRDAQIIDELTGEKKD 392
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
+ Y P G + R+ G + R + +V+ + + +
Sbjct: 393 YFLLHYNFPPYCVGETGFVGSPKRREIGHGKL----AKRGIAAVMPSIDEFPYTVRVVSE 448
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ G +AL D ++ + V +G + +
Sbjct: 449 ITESNGSSSMASVCGTSLALMDAGVPIKASVAGIAMGLVKEGDDFVVLSD---------I 499
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T +G I +Q + +++ LN A+ ++ +
Sbjct: 500 LGDEDHLGDMDFKVAGTSTG-ITALQMDIKIEGITKEIMQIALNQAQGARKHILSVMDQA 558
Query: 238 IS 239
IS
Sbjct: 559 IS 560
Score = 92.2 bits (227), Expect = 5e-17, Method: Composition-based stats.
Identities = 34/228 (14%), Positives = 73/228 (32%), Gaps = 27/228 (11%)
Query: 14 ISLTRRV-SKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----HGWITAEYGMLPR 68
++L V ++ A + +V DT + + +++ + T G +P
Sbjct: 34 VTLETGVIARQATAAVMVTMDDTAVFVSVVGKKEAVPGQDFFPLTVNYQERTYAAGKIPG 93
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
R GR R+I R +R + Q+I + D
Sbjct: 94 GFFKR------EGRPSEGETLTARLIDRPIRPLFPEGFNNEVQVIATVVSVNPDVQPDIP 147
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
+ G A G + A G + G +++ E + +D
Sbjct: 148 TMIGTSAA-------------LAISGIPFNGPIGAARVGHIDGQLVLNPSNTELNASRLD 194
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
T+S ++ V+ +E +++ + + D+ +IK +
Sbjct: 195 LVVAGTES-AVLMVE--SEADNLTEEEMLSAVVFGHDQQQAVIKAINE 239
>gi|71901372|ref|ZP_00683466.1| Polyribonucleotide nucleotidyltransferase [Xylella fastidiosa
Ann-1]
gi|71728871|gb|EAO31008.1| Polyribonucleotide nucleotidyltransferase [Xylella fastidiosa
Ann-1]
Length = 469
Score = 150 bits (379), Expect = 1e-34, Method: Composition-based stats.
Identities = 41/243 (16%), Positives = 85/243 (34%), Gaps = 18/243 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
+R+ GR +R I++ V GS L G+T + TL + +V +
Sbjct: 84 VRIDGRSLEAVRPITVKVGVLPRVHGSGLFTRGETQAIVVTTLGTARDGQVIDAVTGEYK 143
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P S G + R+ G + R + +V+ I +
Sbjct: 144 ENFLFHYNFPPYSVGECGRFGVQKRREIGHGRL----ARRGVLAVMPSLDEFPYTIRVVS 199
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
++ +++G + A++ G+ +AL D ++ + V +G +
Sbjct: 200 EITESNGSSSMASVCGSSLALMDAGVPVKAPVAGIAMGLVKEGERFVVLSD--------- 250
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T G + +Q + +++ L AK ++
Sbjct: 251 ILGDEDHLGDMDFKVAGTSEG-VSALQMDIKIEGITEEIMRQALQQAKVGRLHILGEMDK 309
Query: 237 VIS 239
++
Sbjct: 310 ALA 312
>gi|293510045|ref|ZP_06668753.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus M809]
gi|291466989|gb|EFF09507.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus M809]
Length = 580
Score = 150 bits (379), Expect = 1e-34, Method: Composition-based stats.
Identities = 44/244 (18%), Positives = 88/244 (36%), Gaps = 18/244 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56
+R GR+ +++R + + GS L G T L+ T + ++ + +
Sbjct: 318 IRPDGRKPDEIRPLDSEVGILPRTHGSGLFTRGQTQALSVLTLGALGDYQLIDGLGPEEE 377
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y S G A R+ G RAL+ ++ +A I I
Sbjct: 378 KRFMHHYNFPNFSVGETGPVRAPGRREIGHGALG----ERALKYIIPDTADFPYTIRIVS 433
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V++++G + A+I G+ +AL D ++ + V + + D
Sbjct: 434 EVLESNGSSSQASICGSTLALMDAGVPIKAPVAGIAMGLVTRED---------SYTILTD 484
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED+ D+D T G I +Q + +++ L A+ +++
Sbjct: 485 IQGMEDALGDMDFKVAGTKEG-ITAIQMDIKIDGLTREIIEEALEQARRGRLEIMNHMLQ 543
Query: 237 VISN 240
I
Sbjct: 544 TIDQ 547
Score = 111 bits (278), Expect = 7e-23, Method: Composition-based stats.
Identities = 42/231 (18%), Positives = 84/231 (36%), Gaps = 26/231 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKV---PMWIRNTKHGWITAEYGMLP 67
R +++ ++K A G+ LV++GDT +L+TAT ++ + + G +P
Sbjct: 15 RSLTIETGQLAKQANGAVLVRYGDTVVLSTATASKEPRDGDFFPLTVNYEEKMYAAGKIP 74
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R GR G + R+I R +R + QI+ D +
Sbjct: 75 GGFKKR------EGRPGDDATLTARLIDRPIRPLFPKGYKHDVQIMNMVLSADPDCSPQM 128
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
AA+ G+ +A +G +A ++ G + G I++ E +
Sbjct: 129 AAMIGSSMA-------------LSVSDIPFQGPIAGVNVGYIDGKYIINPTVEEKEVSRL 175
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
D + V+ A ++ + + I L+ Q+ ++
Sbjct: 176 DLEVAGHKD-AVNMVEAGASE--ITEQEMLEAIFFGHEEIQRLVDFQQQIV 223
>gi|260435940|ref|ZP_05789910.1| ribonuclease PH [Synechococcus sp. WH 8109]
gi|260413814|gb|EEX07110.1| ribonuclease PH [Synechococcus sp. WH 8109]
Length = 247
Score = 150 bits (379), Expect = 1e-34, Method: Composition-based stats.
Identities = 100/240 (41%), Positives = 147/240 (61%), Gaps = 4/240 (1%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R GR+ Q+R S+ +A S +V G T +L + LE+KVP W + GW++A
Sbjct: 8 RTDGRRPQQLRPFSVNWNPMGFALSSLVVHTGRTAVLCSVCLEDKVPRWRKGEGFGWLSA 67
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
EY +LP ST R R + GR+QEIQR+IGR+LR+V+D+ LG R ++IDCDVIQA
Sbjct: 68 EYRLLPGSTPQRQSR--ELMKLSGRTQEIQRLIGRSLRAVIDMERLGERTLLIDCDVIQA 125
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
D GTRTA+ITGAW+AL + + D Q + + VAA+S G++ G ++DLDY E
Sbjct: 126 DAGTRTASITGAWLALDQACRSLVDQGVLEQSPLIDQ--VAAVSVGLVDGQALLDLDYSE 183
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
DS +VD N V + G ++E+QG+AE A FS+ +L+LA+ + L++ Q+ +
Sbjct: 184 DSRAEVDLNVVQSGDGRLLEIQGTAEGAPFSRSQLNELLDLAEPGLTSLMQAQRQAFNEH 243
>gi|75674227|ref|YP_316648.1| polynucleotide phosphorylase/polyadenylase [Nitrobacter
winogradskyi Nb-255]
gi|123614401|sp|Q3SWP5|PNP_NITWN RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|74419097|gb|ABA03296.1| 3'exoribonuclease [Nitrobacter winogradskyi Nb-255]
Length = 718
Score = 150 bits (379), Expect = 1e-34, Method: Composition-based stats.
Identities = 49/241 (20%), Positives = 91/241 (37%), Gaps = 18/241 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +R I V A GS L G+T + TL +E+ + T
Sbjct: 316 RIDGRDVKTVRNIVAEAGVLPRAHGSALFTRGETQAMVVTTLGTGEDEQYIDSLAGTYKE 375
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + R+ G + RA+R V+ I + +
Sbjct: 376 TFLLHYNFPPYSVGETGRLGGAKRREIGHGKL----AWRAIRPVLPPHHEFPYTIRVVSE 431
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ GA ++L D ++ + + +L+G A+ +
Sbjct: 432 ITESNGSSSMASVCGASLSLMDAGVPLKRPTAGIAMGLILEGERYAVLSD---------I 482
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T++G I +Q + A +++ L AKD ++
Sbjct: 483 LGDEDHLGDMDFKVAGTEAG-ITSLQMDIKIAGITEEIMKVALGQAKDGRIHILGEMSKA 541
Query: 238 I 238
+
Sbjct: 542 L 542
Score = 113 bits (282), Expect = 2e-23, Method: Composition-based stats.
Identities = 36/235 (15%), Positives = 75/235 (31%), Gaps = 28/235 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKHGWITAEYGML 66
R + L +++ A+G+ + +G+T +L T E V + T G +
Sbjct: 14 RPLKLETGKIARQADGAVVATYGETVVLATVVAAKSPREGVDFLPLTVDYQEKTYAAGRI 73
Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
P R GR + + R+I R +R + Q+I+ +
Sbjct: 74 PGGYFKR------EGRPTEKETLVSRLIDRPVRPLFADGWRNETQVIVTVLSHDMENDPD 127
Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
A+ A A KG + A G + +++ E
Sbjct: 128 ILAMVAASAA-------------LTLSGAPFKGPIGAARVGFINDEYVLNPTLDEIVDTQ 174
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
+D T ++ V+ A+ S++ + +I + ++ +
Sbjct: 175 LDLVVAGTAD-AVLMVESEAKE--LSEEIMLKAVMFGHRHFQPVIDAIIE-LAEK 225
>gi|295706237|ref|YP_003599312.1| polynucleotide phosphorylase [Bacillus megaterium DSM 319]
gi|294803896|gb|ADF40962.1| polynucleotide phosphorylase (PNPase) [Bacillus megaterium DSM 319]
Length = 708
Score = 150 bits (379), Expect = 1e-34, Method: Composition-based stats.
Identities = 43/243 (17%), Positives = 84/243 (34%), Gaps = 18/243 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56
+R GR +++R +S + GS L G T L+ T + ++ + +
Sbjct: 315 VRPDGRSIDEIRPLSSETNLLPRTHGSGLFTRGQTQALSICTLGALGDVQILDGLSVEES 374
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y S G R+ G RAL V+ I +
Sbjct: 375 KRFMHHYNFPSFSVGETRPMRGPGRREIGHGALG----ERALEPVIPNEKDFPYTIRLVS 430
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V++++G T A+I + +A+ D ++ + + G +I
Sbjct: 431 EVLESNGSTSQASICASTLAMMDAGVPIKAPVAGIAMGLIKSGEHYSILTD--------- 481
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T++G + +Q + S++ L AK ++
Sbjct: 482 IQGMEDHLGDMDFKVAGTENG-VTALQMDIKIDGLSREILDEALQQAKKGRMQILNHMMS 540
Query: 237 VIS 239
I+
Sbjct: 541 TIA 543
Score = 112 bits (280), Expect = 4e-23, Method: Composition-based stats.
Identities = 41/232 (17%), Positives = 88/232 (37%), Gaps = 26/232 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATL---EEKVPMWIRNTKHGWITAEYGMLP 67
R++ + ++K A G+ L+++GDT +L+TAT + V + + G +P
Sbjct: 15 RKLEVEVGQLAKQANGAALIRYGDTVVLSTATASKEPKNVDFFPLTVNYEERLYAVGKIP 74
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R GR ++ R+I R +R + Q++ + + +
Sbjct: 75 GGFIKR------EGRPSEKAILASRLIDRPIRPLFADGFRNEVQVVSVVMSVDQNCSSEI 128
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
AA+ G+ +A +G +A + G + +V+ E D+
Sbjct: 129 AAMFGSSLA-------------LSVSDIPFEGPIAGVIVGRVDNEFVVNPTVDELEKSDI 175
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
T I V+ A+ ++ + ++I LI Q+++++
Sbjct: 176 HLTVAGTKD-AINMVEAGADEVP--EEVMLEAIMFGHEQIKKLIAFQEEIVA 224
>gi|156743526|ref|YP_001433655.1| polynucleotide phosphorylase/polyadenylase [Roseiflexus
castenholzii DSM 13941]
gi|257096706|sp|A7NPZ1|PNP_ROSCS RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|156234854|gb|ABU59637.1| Polyribonucleotide nucleotidyltransferase [Roseiflexus castenholzii
DSM 13941]
Length = 746
Score = 150 bits (379), Expect = 1e-34, Method: Composition-based stats.
Identities = 47/243 (19%), Positives = 85/243 (34%), Gaps = 17/243 (6%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +R IS+ + GS L G T +LT ATL EE+ +
Sbjct: 321 RVDGRGPKDIRPISVEVGLIPRVHGSGLFTRGQTQVLTLATLGSPAEEQRLDDLGIETAK 380
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P STG + + R G R+L +V+ + + +
Sbjct: 381 RYIHHYNFPPFSTGEIRRLGSPRRRDIGHGAL----AERSLLAVLPPKEEFPYTMRLVSE 436
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ ++G + A++ G+ +AL D + + + + D+
Sbjct: 437 TLSSNGSSSMASVCGSSLALMDAGVPIRAPVAGIAMGLITGKD--------GRWRVLTDI 488
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T G I +Q + + + A++ +++ V
Sbjct: 489 QGIEDHLGDMDFKVAGTAKG-ITGLQMDIKTTGITYEIMREAFAQAREGRLHVLEKMNAV 547
Query: 238 ISN 240
IS
Sbjct: 548 ISE 550
Score = 105 bits (262), Expect = 5e-21, Method: Composition-based stats.
Identities = 38/233 (16%), Positives = 74/233 (31%), Gaps = 27/233 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEK----VPMWIRNTKHGWITAEYGML 66
R ++L ++ A G+ +V++GDT LL TA ++ + + G +
Sbjct: 16 RTLTLETGRFAEQANGAVVVRYGDTMLLATAVASKEPRTDTDFFPLTVDYEEKMYAAGKI 75
Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
P S R G+ + R+ R LR + QII+ I
Sbjct: 76 PGSFFKR------EGKPTEGAILTARLTDRPLRPLFPEGYRNEVQIIVTTFSIDMVNDPA 129
Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
L + + G V A+ G + G ++ + D
Sbjct: 130 P-------------LSIIAASAALAISDIPFLGPVGAVQVGYIDGALQINPPMPNMANSD 176
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
+D T ++ V+ A ++ + + LQ +++
Sbjct: 177 LDLVVAGTKE-AVLMVEAGANE--LPEEVMLEAVIQGHQVCKQICDLQNELVK 226
>gi|269961984|ref|ZP_06176339.1| polyribonucleotide nucleotidyltransferase [Vibrio harveyi 1DA3]
gi|269833307|gb|EEZ87411.1| polyribonucleotide nucleotidyltransferase [Vibrio harveyi 1DA3]
Length = 660
Score = 150 bits (379), Expect = 1e-34, Method: Composition-based stats.
Identities = 43/242 (17%), Positives = 92/242 (38%), Gaps = 18/242 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR+++ +R + + V GS L G+T L TATL + ++ + +
Sbjct: 316 RIDGREKDMVRALDVRTGVLPRTHGSSLFTRGETQALVTATLGTQRDAQIIDELTGERKD 375
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P G + R+ G + R + +V+ + + +
Sbjct: 376 HFLLHYNFPPYCVGETGFVGSPKRREIGHGKL----AKRGIAAVMPSVDEFPYTVRVVSE 431
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ G +AL D ++ + V +G + +
Sbjct: 432 ITESNGSSSMASVCGTSLALMDAGVPIKSSVAGIAMGLVKEGDDFVVLSD---------I 482
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T++G I +Q + +++ LN A+ ++ + +
Sbjct: 483 LGDEDHLGDMDFKVAGTNTG-ITALQMDIKIEGITKEIMQIALNQAQGARKHILSVMDEA 541
Query: 238 IS 239
IS
Sbjct: 542 IS 543
Score = 88.7 bits (218), Expect = 6e-16, Method: Composition-based stats.
Identities = 34/228 (14%), Positives = 72/228 (31%), Gaps = 27/228 (11%)
Query: 14 ISLTRRV-SKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKHGWITAEYGMLPR 68
++L V ++ A + +V DT + + + E + + T G +P
Sbjct: 17 VTLETGVIARQATAAVMVTMDDTAVFVSVVGKKEAVEGQDFFPLTVNYQERTYAAGKIPG 76
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
R GR R+I R +R + + Q+I + D
Sbjct: 77 GFFKR------EGRPSEGETLTARLIDRPIRPLFPDAFKNEVQVIATVVSVNPDVQPDIV 130
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
+ G A G + A G + G +++ E +D
Sbjct: 131 TMIGTSAA-------------LAISGIPFNGPIGAARVGHIDGQLVLNPSNTELEASKLD 177
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
T+S ++ V+ +E +++ + + D+ +I +
Sbjct: 178 LVVAGTES-AVLMVE--SEADNLTEEEMLSAVVYGHDQQQTVINAINE 222
>gi|109897953|ref|YP_661208.1| polynucleotide phosphorylase/polyadenylase [Pseudoalteromonas
atlantica T6c]
gi|123064734|sp|Q15VD4|PNP_PSEA6 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|109700234|gb|ABG40154.1| Polyribonucleotide nucleotidyltransferase [Pseudoalteromonas
atlantica T6c]
Length = 703
Score = 150 bits (379), Expect = 1e-34, Method: Composition-based stats.
Identities = 40/244 (16%), Positives = 83/244 (34%), Gaps = 18/244 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +R + + + GS L G+T + ATL + ++ +
Sbjct: 314 RIDGRDPAMIRALDVATGILPRTHGSALFTRGETQAIVAATLGTERDAQMIDGLNGKVDS 373
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P G + R+ G + R +++V+ + + +
Sbjct: 374 RFMLHYNFPPYCVGETGFVGSPKRREIGHGRL----AKRGIQAVMPSEKEFPYVVRVVSE 429
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ G +AL D ++ + V + +
Sbjct: 430 ITESNGSSSMASVCGTSLALMDAGVPIKASVAGIAMGLVKNDENFVVLSD---------I 480
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T G I +Q + +Q+ L AK+ ++ +
Sbjct: 481 LGDEDHLGDMDFKVAGTTEG-ITALQMDIKIEGITQEIMQVALKQAKEARLHILGVMDQA 539
Query: 238 ISNE 241
IS
Sbjct: 540 ISGH 543
Score = 94.1 bits (232), Expect = 1e-17, Method: Composition-based stats.
Identities = 36/228 (15%), Positives = 71/228 (31%), Gaps = 27/228 (11%)
Query: 14 ISLTRRV-SKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----HGWITAEYGMLPR 68
++L V ++ A + + DT +L + ++ + T G +P
Sbjct: 15 VTLETGVIARQATAAVMASMDDTSVLVSVVGKKDTKPGQDFFPLTVNYQERTYAAGKIPG 74
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
R GR R+I R +R + + QII+ + T
Sbjct: 75 GFFKR------EGRPSEYETLTSRLIDRPIRPLFPDGFMNEVQIIVTVVSANPEIPTDII 128
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
++ G A G V A G G +++ E +D
Sbjct: 129 SLIGTSAA-------------LAISGMPFNGPVGAARVGYTDGQYVLNTRTSELEISQLD 175
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
T G ++ V+ AE S+D + +++ ++ +
Sbjct: 176 LVVAGTK-GAVLMVESEAE--VLSEDVMLGAVMFGHEQMQTVVNAVTE 220
>gi|284036900|ref|YP_003386830.1| polyribonucleotide nucleotidyltransferase [Spirosoma linguale DSM
74]
gi|283816193|gb|ADB38031.1| polyribonucleotide nucleotidyltransferase [Spirosoma linguale DSM
74]
Length = 708
Score = 150 bits (379), Expect = 1e-34, Method: Composition-based stats.
Identities = 53/243 (21%), Positives = 89/243 (36%), Gaps = 18/243 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
RL GR+ +Q+R+IS GS L G+T LTT TL +E++ +
Sbjct: 318 RLDGRKLDQIRQISAEAGYLPGPHGSALFTRGETQSLTTVTLGTKTDEQIVDQTMFQGYS 377
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y STG R+ G R+L+ V+ + I I D
Sbjct: 378 KFLLHYNFPGFSTGEVKPNRGAGRREIGHGNL----AHRSLKKVLPPAEENPYTIRIVSD 433
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+++++G + A + +AL D ++ + + G A+ +
Sbjct: 434 ILESNGSSSMATVCAGTMALMDAGIKIKAPVAGIAMGLISDGDKYAVLSD---------I 484
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T+ G IV Q + S + L A+ ++ K
Sbjct: 485 LGDEDHLGDMDFKVTGTEKG-IVACQMDLKVDGLSYEVLAQALEQARVGRLHILGEMKKG 543
Query: 238 ISN 240
IS+
Sbjct: 544 ISD 546
Score = 103 bits (257), Expect = 2e-20, Method: Composition-based stats.
Identities = 50/245 (20%), Positives = 87/245 (35%), Gaps = 34/245 (13%)
Query: 3 LSGRQENQMREISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHG 57
GR EI++ +++ A+G+ +V+ GDT LL T +E V + +
Sbjct: 12 PDGR------EITIETGKLARQADGAVVVRLGDTMLLATVVSSKDAKEGVDFLPLSVDYQ 65
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
A G +P S R GR G I R++ RALR + + Q++I
Sbjct: 66 EKFASAGRIPGSFQRR------EGRLGDHEILISRLVDRALRPIFPDNYHADTQVMITL- 118
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
I+ D L + S G ++ + + G ++
Sbjct: 119 ------------ISADPEVQPDALAALAASSALAVSDIPFNGPISEVRVAKIDGQYKINP 166
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
E +D T+ I V+ E S+ L +A + I + QK+
Sbjct: 167 KTAELERATIDLIVAATEKD-ICMVE--GEMDECSEAEVVEALKVAHEAIKIQCQAQKE- 222
Query: 238 ISNEV 242
+ +V
Sbjct: 223 LEAKV 227
>gi|317487420|ref|ZP_07946208.1| polyribonucleotide nucleotidyltransferase [Bilophila wadsworthia
3_1_6]
gi|316921352|gb|EFV42650.1| polyribonucleotide nucleotidyltransferase [Bilophila wadsworthia
3_1_6]
Length = 745
Score = 150 bits (379), Expect = 1e-34, Method: Composition-based stats.
Identities = 42/237 (17%), Positives = 84/237 (35%), Gaps = 11/237 (4%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R+ GR +R I + + A GS L G+T L TL ++ G +T
Sbjct: 323 RIDGRDTKTVRPIEIQPGILPRAHGSALFTRGETQSLCVTTLGSSTDNQRMDSLTGDVTK 382
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
+ ML + E R R + +AL+ ++ + + + +++
Sbjct: 383 TF-MLHYNFPPFSVGEVKPVRVSRREIGHGALAEKALKPIIPAGDGFPFTVRVVAETLES 441
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
+G + AA+ G ++L D + D + + +G + + E
Sbjct: 442 NGSSSMAAVCGGCLSLMDAGVPISDPVAGVAMGLIKEGDNFIVLTD---------ILGDE 492
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
D+ D+D T G + VQ + + + + A + ++ K I
Sbjct: 493 DALGDMDFKIAGTAEG-VTAVQMDIKITGLTTEIMRKAMRQAHEARLHILGEMKKAI 548
Score = 91.4 bits (225), Expect = 9e-17, Method: Composition-based stats.
Identities = 43/226 (19%), Positives = 75/226 (33%), Gaps = 25/226 (11%)
Query: 13 EISLTRR-VSKYAEGSCLVKFGDTHLLTTAT---LEEKVPMWIRNTKHGWITAEYGMLPR 68
EI L V+ A GS ++ G T +L T L+ + ++ G +P
Sbjct: 18 EIILETGRVATQAHGSVTIQCGGTVVLVTVCSQPLDFDRGFFPLTVEYSERMYAAGRIPG 77
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
S R GR R + R+I R +R + Q++ + +
Sbjct: 78 SFFRR-----EIGRPSERETLVSRLIDRPIRPLFPKGLPEDVQVLASVISSDQENESDVL 132
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
+IT A A+ VA G + G I++ E + D++
Sbjct: 133 SITAASAAVM-------------LSPLPFAEAVAGGRIGRINGQFILNPTVKEMAESDLN 179
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
+ +V V+ E +D L + I L++ Q
Sbjct: 180 I-VFAASADALVMVE--GEATFVPEDVIIDALEWGRKEIQPLVEAQ 222
>gi|157164996|ref|YP_001467328.1| polynucleotide phosphorylase/polyadenylase [Campylobacter concisus
13826]
gi|187470951|sp|A7ZEX0|PNP_CAMC1 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|112801842|gb|EAT99186.1| polyribonucleotide nucleotidyltransferase
(Polynucleotidephosphorylase) (PNPase) [Campylobacter
concisus 13826]
Length = 732
Score = 150 bits (379), Expect = 1e-34, Method: Composition-based stats.
Identities = 50/253 (19%), Positives = 86/253 (33%), Gaps = 27/253 (10%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKH---- 56
+R GR ++R IS+ V A GSCL G T L ATL + +
Sbjct: 343 IRADGRGLEEVRPISIETNVLPNAHGSCLFTRGQTQALVVATLGTDSDAQMYDILTEKAP 402
Query: 57 --GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIII 114
Y S G +A R+ G RAL + I +
Sbjct: 403 LVEKFMFNYNFPGFSVGEASPLKAPGRRELGHGNL----AKRALAPSI--DLASPYTIRV 456
Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPI 174
++++++G + A++ G +AL + + + + +G A+ ++
Sbjct: 457 VSEILESNGSSSMASVCGGSLALRAAGVNTQKLVAGVAMGLIFEGEKHAVLTDIM----- 511
Query: 175 VDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
ED D+D T G I +Q + S + L AK ++ L
Sbjct: 512 ----GLEDHDGDMDFKVAGTSDG-ITALQMDIKLGGISLEVLKEALYQAKRGREHILALM 566
Query: 235 KDV-----ISNEV 242
I+ +V
Sbjct: 567 TQADKNIEINEDV 579
Score = 76.4 bits (186), Expect = 3e-12, Method: Composition-based stats.
Identities = 34/255 (13%), Positives = 73/255 (28%), Gaps = 53/255 (20%)
Query: 20 VSKYAEGSCLVKFGDTHLLTTATLEE---KVPMWIRNTKHGWITAEYGMLPRSTGNRVKR 76
V+K A G+ L++ +T +L T E+ + ++ G +P R
Sbjct: 19 VAKQASGAVLLRVKNTVVLATVAREDVQVEEDFLPLTVQYIEKAYAAGKIPGGYVKR--- 75
Query: 77 EAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVA 136
+ G R+I R+LR + QI++ + + ++ A VA
Sbjct: 76 ---ETKPGDFETLTARIIDRSLRPLFPKGYAYPTQIVVMVLSADPEVDLQVVSLNAASVA 132
Query: 137 LHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDS 196
L+ + V + G + +++ E +D T
Sbjct: 133 LY-------------LSDIPVNRPVCGVRVGYIDDKFVINPSNSELKQSAIDLYVAGTKD 179
Query: 197 GHIVEVQGSAE------------------------------RATFSQDHFFAMLNLAKDR 226
++ ++ + FS+D ++ A
Sbjct: 180 -ELLMIEMRSLPQQTTQLIPMVAIEPMIDPSLSDSMAQKQVMNEFSEDKMVEAIDFAGKA 238
Query: 227 IADLIKLQKDVISNE 241
I ++
Sbjct: 239 ILRASSAYEEAFKEH 253
>gi|15599934|ref|NP_253428.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas aeruginosa
PAO1]
gi|107103839|ref|ZP_01367757.1| hypothetical protein PaerPA_01004910 [Pseudomonas aeruginosa PACS2]
gi|116052887|ref|YP_793204.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas aeruginosa
UCBPP-PA14]
gi|218893835|ref|YP_002442704.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas aeruginosa
LESB58]
gi|254238523|ref|ZP_04931846.1| polyribonucleotide nucleotidyltransferase [Pseudomonas aeruginosa
C3719]
gi|254244358|ref|ZP_04937680.1| polyribonucleotide nucleotidyltransferase [Pseudomonas aeruginosa
2192]
gi|296391567|ref|ZP_06881042.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas aeruginosa
PAb1]
gi|313109720|ref|ZP_07795660.1| polyribonucleotide nucleotidyltransferase [Pseudomonas aeruginosa
39016]
gi|81539753|sp|Q9HV59|PNP_PSEAE RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|122257102|sp|Q02FT2|PNP_PSEAB RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|226702678|sp|B7V1F2|PNP_PSEA8 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|9951002|gb|AAG08126.1|AE004888_1 polyribonucleotide nucleotidyltransferase [Pseudomonas aeruginosa
PAO1]
gi|115588108|gb|ABJ14123.1| polyribonucleotide nucleotidyltransferase [Pseudomonas aeruginosa
UCBPP-PA14]
gi|126170454|gb|EAZ55965.1| polyribonucleotide nucleotidyltransferase [Pseudomonas aeruginosa
C3719]
gi|126197736|gb|EAZ61799.1| polyribonucleotide nucleotidyltransferase [Pseudomonas aeruginosa
2192]
gi|218774063|emb|CAW29879.1| polyribonucleotide nucleotidyltransferase [Pseudomonas aeruginosa
LESB58]
gi|310882162|gb|EFQ40756.1| polyribonucleotide nucleotidyltransferase [Pseudomonas aeruginosa
39016]
Length = 701
Score = 150 bits (379), Expect = 1e-34, Method: Composition-based stats.
Identities = 44/243 (18%), Positives = 90/243 (37%), Gaps = 18/243 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +R + + V GS L G+T L ATL + ++ + +
Sbjct: 316 RIDGRDTRTVRPLRIEVGVLGKTHGSALFTRGETQALVVATLGTARDAQLLDTLEGERKD 375
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + + R+ G + R + +++ I + +
Sbjct: 376 AFMLHYNFPPFSVGECGRMGSPGRREIGHGRL----ARRGVAAMLPTQDEFPYTIRVVSE 431
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ GA +AL D ++ + V +G A+ +
Sbjct: 432 ITESNGSSSMASVCGASLALMDAGVPVKAPVAGIAMGLVKEGEKFAVLTD---------I 482
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D TD G + +Q + +++ L A + +++ V
Sbjct: 483 LGDEDHLGDMDFKVAGTDKG-VTALQMDIKINGITEEIMEIALGQALEARLNILGQMNQV 541
Query: 238 ISN 240
I+
Sbjct: 542 IAK 544
Score = 104 bits (259), Expect = 1e-20, Method: Composition-based stats.
Identities = 38/233 (16%), Positives = 76/233 (32%), Gaps = 28/233 (12%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGMLPR 68
++L +++ A G+ LV D +L T E + + + T G +P
Sbjct: 15 VTLETGRIARQATGAVLVTMDDVSVLVTVVGAKSPAEGRDFFPLSVHYQEKTYAAGRIPG 74
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
R GR + R+I R +R + + Q++ A
Sbjct: 75 GFFKR------EGRPSEKETLTSRLIDRPIRPLFPEGFMNEVQVVCTVVSTNKKSDPDIA 128
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY-PIVDLDYGEDSTIDV 187
A+ G A G + A G I++ Y + + +
Sbjct: 129 AMIGTSAA-------------LAISGIPFAGPIGAARVGFHPEIGYILNPTYEQLQSSSL 175
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
D T+ ++ V+ +E ++D + A D +I+ K++ +
Sbjct: 176 DMVVAGTED-AVLMVE--SEADELTEDQMLGAVLFAHDEFQAVIRAVKELAAE 225
>gi|294500891|ref|YP_003564591.1| polynucleotide phosphorylase (PNPase) [Bacillus megaterium QM
B1551]
gi|294350828|gb|ADE71157.1| polynucleotide phosphorylase (PNPase) [Bacillus megaterium QM
B1551]
Length = 708
Score = 150 bits (378), Expect = 2e-34, Method: Composition-based stats.
Identities = 43/243 (17%), Positives = 84/243 (34%), Gaps = 18/243 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56
+R GR +++R +S + GS L G T L+ T + ++ + +
Sbjct: 315 VRPDGRSIDEIRPLSSETNLLPRTHGSGLFTRGQTQALSICTLGALGDVQILDGLSVEES 374
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y S G R+ G RAL V+ I +
Sbjct: 375 KRFMHHYNFPSFSVGETRPMRGPGRREIGHGALG----ERALEPVIPNEKDFPYTIRLVS 430
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V++++G T A+I + +A+ D ++ + + G +I
Sbjct: 431 EVLESNGSTSQASICASTLAMMDAGVPIKAPVAGIAMGLIKSGEHYSILTD--------- 481
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T++G + +Q + S++ L AK ++
Sbjct: 482 IQGMEDHLGDMDFKVAGTENG-VTALQMDIKIDGLSREILDEALQQAKKGRMQILNHMMS 540
Query: 237 VIS 239
I+
Sbjct: 541 TIA 543
Score = 112 bits (280), Expect = 4e-23, Method: Composition-based stats.
Identities = 41/232 (17%), Positives = 88/232 (37%), Gaps = 26/232 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATL---EEKVPMWIRNTKHGWITAEYGMLP 67
R++ + ++K A G+ L+++GDT +L+TAT + V + + G +P
Sbjct: 15 RKLEVEVGQLAKQANGAALIRYGDTVVLSTATASKEPKNVDFFPLTVNYEERLYAVGKIP 74
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R GR ++ R+I R +R + Q++ + + +
Sbjct: 75 GGFIKR------EGRPSEKAILASRLIDRPIRPLFADGFRNEVQVVSVVMSVDQNCSSEI 128
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
AA+ G+ +A +G +A + G + +V+ E D+
Sbjct: 129 AAMFGSSLA-------------LSVSDIPFEGPIAGVIVGRVDNEFVVNPTVDELEKSDI 175
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
T I V+ A+ ++ + ++I LI Q+++++
Sbjct: 176 HLTVAGTKD-AINMVEAGADEVP--EEVMLEAIMFGHEQIKKLIAFQEEIVA 224
>gi|153835027|ref|ZP_01987694.1| polyribonucleotide nucleotidyltransferase [Vibrio harveyi HY01]
gi|148868504|gb|EDL67603.1| polyribonucleotide nucleotidyltransferase [Vibrio harveyi HY01]
Length = 710
Score = 150 bits (378), Expect = 2e-34, Method: Composition-based stats.
Identities = 43/242 (17%), Positives = 92/242 (38%), Gaps = 18/242 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR+++ +R + + V GS L G+T L TATL + ++ + +
Sbjct: 316 RIDGREKDMVRALDVRTGVLPRTHGSSLFTRGETQALVTATLGTQRDAQIIDELTGERKD 375
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P G + R+ G + R + +V+ + + +
Sbjct: 376 HFLLHYNFPPYCVGETGFVGSPKRREIGHGKL----AKRGIAAVMPSVDEFPYTVRVVSE 431
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ G +AL D ++ + V +G + +
Sbjct: 432 ITESNGSSSMASVCGTSLALMDAGVPIKSSVAGIAMGLVKEGDDFVVLSD---------I 482
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T++G I +Q + +++ LN A+ ++ + +
Sbjct: 483 LGDEDHLGDMDFKVAGTNTG-ITALQMDIKIEGITKEIMQIALNQAQGARKHILSVMDEA 541
Query: 238 IS 239
IS
Sbjct: 542 IS 543
Score = 90.7 bits (223), Expect = 2e-16, Method: Composition-based stats.
Identities = 36/228 (15%), Positives = 74/228 (32%), Gaps = 27/228 (11%)
Query: 14 ISLTRRV-SKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKHGWITAEYGMLPR 68
++L V ++ A + +V DT + + + E + + T G +P
Sbjct: 17 VTLETGVIARQATAAVMVTMDDTAVFVSVVGKKEAVEGQDFFPLTVNYQERTYAAGKIPG 76
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
R GR R+I R +R + + Q+I + D
Sbjct: 77 GFFKR------EGRPSEGETLTARLIDRPIRPLFPDAFKNEVQVIATVVSVNPDVQPDIP 130
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
+ G A G + A G + G +++ E T +D
Sbjct: 131 TMIGTSAA-------------LAISGIPFNGPIGAARVGHIDGQLVLNPSNTELDTSKLD 177
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
T+S ++ V+ +E +++ + + D+ +IK +
Sbjct: 178 LVVAGTES-AVLMVE--SEADNLTEEEMLSAVVFGHDQQQAVIKAINE 222
>gi|332685840|ref|YP_004455614.1| polyribonucleotide nucleotidyltransferase [Melissococcus plutonius
ATCC 35311]
gi|332369849|dbj|BAK20805.1| polyribonucleotide nucleotidyltransferase [Melissococcus plutonius
ATCC 35311]
Length = 713
Score = 150 bits (378), Expect = 2e-34, Method: Composition-based stats.
Identities = 43/244 (17%), Positives = 85/244 (34%), Gaps = 18/244 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56
+R GR+ +++R +S + GS L G T L+ T E ++ + +
Sbjct: 324 IRPDGRKLDEIRPLSSEVSLLPRVHGSGLFTRGQTQALSACTLAPLGEHQIIDGLGIEES 383
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y S G+ + + R+ G RAL ++ I +
Sbjct: 384 KRFIHHYNFPQFSVGSTGRAGSPGRREIGHGALG----ERALSQIIPSPEAFPYTIRLVA 439
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V++++G + A+I +AL D ++ + V G + D
Sbjct: 440 EVLESNGSSSQASICAGTLALMDAGVPIKAPVAGIAMGLVSDGE---------NYTILTD 490
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T G I +Q + ++ L AK +++
Sbjct: 491 IQGLEDHLGDMDFKVAGTKQG-ITALQMDIKIEGITEQILKEALEQAKKARMEILNELTS 549
Query: 237 VISN 240
++
Sbjct: 550 TLAE 553
Score = 116 bits (291), Expect = 2e-24, Method: Composition-based stats.
Identities = 43/230 (18%), Positives = 84/230 (36%), Gaps = 26/230 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEK---VPMWIRNTKHGWITAEYGMLP 67
R + + ++K A G+ L+++GDT +L+ A ++ V + + G +P
Sbjct: 14 RPLQVEVGQLAKQANGAVLIRYGDTVVLSAAVASKEAKDVDFFPLTVNYEEKMYAVGKVP 73
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R GR + R+I R +R + QI ++ D
Sbjct: 74 GGFIKR------EGRPSESATLTARLIDRPIRPMFTEGFRNEVQITNIVMSVEQDCSPAM 127
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
AA+ G+ +A G +A + G + G +++ + + D+
Sbjct: 128 AAMLGSSLA-------------LTISDIPFNGPIAGVEVGRIDGEYVLNPTVEQSNQSDI 174
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
D + T I V+ AE S+ L I +L+ Q+++
Sbjct: 175 DLSVAGTKE-AINMVESGAEE--VSESDMLGALLFGHAAIKELVAFQEEI 221
>gi|315502540|ref|YP_004081427.1| guanosine pentaphosphate synthetase i/polyribonucleotide
nucleotidyltransferase [Micromonospora sp. L5]
gi|315409159|gb|ADU07276.1| guanosine pentaphosphate synthetase I/polyribonucleotide
nucleotidyltransferase [Micromonospora sp. L5]
Length = 789
Score = 150 bits (378), Expect = 2e-34, Method: Composition-based stats.
Identities = 43/243 (17%), Positives = 81/243 (33%), Gaps = 14/243 (5%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
+R+ GR +R +S V GS L + G+T +L TL E++ +
Sbjct: 340 VRIDGRGPRDIRPLSAEVGVLPRVHGSALFERGETQILGVTTLNMLRMEQMVDTLSPENR 399
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P STG + + R+ G RAL V+ I
Sbjct: 400 KRYMHNYNFPPYSTGETGRVGSPKRREIGHGAL----AERALIPVLPSREEFPYAIRQVS 455
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+ + ++G T ++ + + L ++ + + G + D
Sbjct: 456 EALGSNGSTSMGSVCASTLGLLSAGVPLKAPVAGIAMGLISDE-----VDGKTQYVTLTD 510
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED+ D+D T + +Q + D A L A + ++ + +
Sbjct: 511 ILGAEDAFGDMDFKVAGTRDF-VTALQLDTKLDGIPSDVLAAALQQAHEARQTILDVMQR 569
Query: 237 VIS 239
I
Sbjct: 570 AIE 572
Score = 91.1 bits (224), Expect = 1e-16, Method: Composition-based stats.
Identities = 40/248 (16%), Positives = 76/248 (30%), Gaps = 39/248 (15%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKV----PMWIRNTKHGWITAEYGML 66
REI+ + +++ A GS + + G+T +L+ T ++ + G +
Sbjct: 23 REITFSTGRLARQAAGSVVAQLGETVVLSATTAGKQPRESFDFFPLTVDVEERMYAAGRI 82
Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
P S R GR + R+I R LR Q++ +
Sbjct: 83 PGSFFRR------EGRPSEDAILTCRLIDRPLRPSFVKGLRNEVQVVETVLALDPQHPYD 136
Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
AI A ++ G + A + G + E +
Sbjct: 137 VVAINAASMST-------------KLSGLPFSGPIGATRVAHVDGQWVAFPTLEELARAT 183
Query: 187 VDANFVMT--DSGH--IVEVQGSAERATF----------SQDHFFAMLNLAKDRIADLIK 232
D G I+ V+ A +++ + L AK I +L +
Sbjct: 184 FDMVVAGRTLADGEVAIMMVEAEATPNAVALISDGATAPTEEIVASGLEAAKPAIRELCR 243
Query: 233 LQKDVISN 240
Q + ++
Sbjct: 244 AQSE-LAE 250
>gi|302865980|ref|YP_003834617.1| guanosine pentaphosphate synthetase I/polyribonucleotide
nucleotidyltransferase [Micromonospora aurantiaca ATCC
27029]
gi|302568839|gb|ADL45041.1| guanosine pentaphosphate synthetase I/polyribonucleotide
nucleotidyltransferase [Micromonospora aurantiaca ATCC
27029]
Length = 796
Score = 150 bits (378), Expect = 2e-34, Method: Composition-based stats.
Identities = 43/243 (17%), Positives = 81/243 (33%), Gaps = 14/243 (5%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
+R+ GR +R +S V GS L + G+T +L TL E++ +
Sbjct: 340 VRIDGRGPRDIRPLSAEVGVLPRVHGSALFERGETQILGVTTLNMLRMEQMVDTLSPENR 399
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P STG + + R+ G RAL V+ I
Sbjct: 400 KRYMHNYNFPPYSTGETGRVGSPKRREIGHGAL----AERALIPVLPSREEFPYAIRQVS 455
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+ + ++G T ++ + + L ++ + + G + D
Sbjct: 456 EALGSNGSTSMGSVCASTLGLLSAGVPLKAPVAGIAMGLISDE-----VDGKTQYVTLTD 510
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED+ D+D T + +Q + D A L A + ++ + +
Sbjct: 511 ILGAEDAFGDMDFKVAGTRDF-VTALQLDTKLDGIPSDVLAAALQQAHEARQTILDVMQR 569
Query: 237 VIS 239
I
Sbjct: 570 AIE 572
Score = 91.1 bits (224), Expect = 1e-16, Method: Composition-based stats.
Identities = 40/248 (16%), Positives = 76/248 (30%), Gaps = 39/248 (15%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKV----PMWIRNTKHGWITAEYGML 66
REI+ + +++ A GS + + G+T +L+ T ++ + G +
Sbjct: 23 REITFSTGRLARQAAGSVVAQLGETVVLSATTAGKQPRESFDFFPLTVDVEERMYAAGRI 82
Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
P S R GR + R+I R LR Q++ +
Sbjct: 83 PGSFFRR------EGRPSEDAILTCRLIDRPLRPSFVKGLRNEVQVVETVLALDPQHPYD 136
Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
AI A ++ G + A + G + E +
Sbjct: 137 VVAINAASMST-------------KLSGLPFSGPIGATRVAHVDGQWVAFPTLEELARAT 183
Query: 187 VDANFVMT--DSGH--IVEVQGSAERATF----------SQDHFFAMLNLAKDRIADLIK 232
D G I+ V+ A +++ + L AK I +L +
Sbjct: 184 FDMVVAGRTLADGEVAIMMVEAEATPNAVALISDGATAPTEEIVASGLEAAKPAIRELCR 243
Query: 233 LQKDVISN 240
Q + ++
Sbjct: 244 AQSE-LAE 250
>gi|224060110|ref|XP_002300042.1| predicted protein [Populus trichocarpa]
gi|222847300|gb|EEE84847.1| predicted protein [Populus trichocarpa]
Length = 961
Score = 150 bits (378), Expect = 2e-34, Method: Composition-based stats.
Identities = 50/243 (20%), Positives = 88/243 (36%), Gaps = 11/243 (4%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
R+ GR+ +++R + GS L GDT +L T TL + + +
Sbjct: 366 FRVDGRRLDEVRPLYCEAGYLPNLHGSSLFSRGDTQVLCTVTLGAPRDAQRLDSLVGPPT 425
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P S KR ++ R+ G +AL +V+ + I+
Sbjct: 426 KRFMLHYSFPPFSINEVGKRVGLNRREVGHGTL----AEKALLAVLPPEDDFPYTVRINS 481
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V+ +DG T A + G VA+ D +++ + V + + + + + D
Sbjct: 482 EVMASDGSTSMATVCGGSVAMMDAGIPLQEHVAGVSVGLVSEVDPS--TGEIKDYRIVTD 539
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T G + VQ + A D L A ++
Sbjct: 540 ILGLEDHLGDMDFKIAGTRKG-VTAVQLDIKPAGIPLDIICECLEPALKGRLQILARMDQ 598
Query: 237 VIS 239
IS
Sbjct: 599 EIS 601
Score = 82.6 bits (202), Expect = 4e-14, Method: Composition-based stats.
Identities = 39/232 (16%), Positives = 76/232 (32%), Gaps = 29/232 (12%)
Query: 6 RQENQM--REISLTRR-VSKYAEGSCLVKFGDTHLLTTAT---LEEKVPMWIRNTKHGWI 59
R+E ++ R I+ ++++A GS ++ +T +L+T T + +
Sbjct: 57 REEFEIGSRLITFETGKIARFANGSVVLGMEETKVLSTVTSSKGDSVRDFLPLTVDYQEK 116
Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119
G++P + R G R R+I R +R + Q++
Sbjct: 117 QFAQGVIPSTYLRR------EGAPKERELLCGRLIDRPIRPLFPAGFYHEVQVMASVLSS 170
Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179
A AL G + I G +CG +V+
Sbjct: 171 DGRRDPDVMAANATSAALM-------------LSDIPWGGPIGVIRIGRICGQFVVNPTM 217
Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAK-DRIADL 230
E S D++ + T ++ + ++ A L LA + + L
Sbjct: 218 DELSLSDLNLVYACTKDKTLM---IDVQAGGIAEKDLEAGLRLAHPEAVKYL 266
>gi|156975660|ref|YP_001446567.1| polynucleotide phosphorylase/polyadenylase [Vibrio harveyi ATCC
BAA-1116]
gi|187611334|sp|A7MZI2|PNP_VIBHB RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|156527254|gb|ABU72340.1| hypothetical protein VIBHAR_03393 [Vibrio harveyi ATCC BAA-1116]
Length = 710
Score = 150 bits (378), Expect = 2e-34, Method: Composition-based stats.
Identities = 43/242 (17%), Positives = 92/242 (38%), Gaps = 18/242 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR+++ +R + + V GS L G+T L TATL + ++ + +
Sbjct: 316 RIDGREKDMVRALDVRTGVLPRTHGSSLFTRGETQALVTATLGTQRDAQIIDELTGERKD 375
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P G + R+ G + R + +V+ + + +
Sbjct: 376 HFLLHYNFPPYCVGETGFVGSPKRREIGHGKL----AKRGIAAVMPSVDEFPYTVRVVSE 431
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ G +AL D ++ + V +G + +
Sbjct: 432 ITESNGSSSMASVCGTSLALMDAGVPIKSSVAGIAMGLVKEGDDFVVLSD---------I 482
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T++G I +Q + +++ LN A+ ++ + +
Sbjct: 483 LGDEDHLGDMDFKVAGTNTG-ITALQMDIKIEGITKEIMQIALNQAQGARKHILSVMDEA 541
Query: 238 IS 239
IS
Sbjct: 542 IS 543
Score = 90.3 bits (222), Expect = 2e-16, Method: Composition-based stats.
Identities = 35/228 (15%), Positives = 73/228 (32%), Gaps = 27/228 (11%)
Query: 14 ISLTRRV-SKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKHGWITAEYGMLPR 68
++L V ++ A + +V DT + + + E + + T G +P
Sbjct: 17 VTLETGVIARQATAAVMVTMDDTAVFVSVVGKKEAVEGQDFFPLTVNYQERTYAAGKIPG 76
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
R GR R+I R +R + + Q+I + D
Sbjct: 77 GFFKR------EGRPSEGETLTARLIDRPIRPLFPDAFKNEVQVIATVVSVNPDVQPDIP 130
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
+ G A G + A G + G +++ E +D
Sbjct: 131 TMIGTSAA-------------LAISGIPFNGPIGAARVGHIDGQLVLNPSNTELEASKLD 177
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
T+S ++ V+ +E +++ + + D+ +IK +
Sbjct: 178 LVVAGTES-AVLMVE--SEADNLTEEEMLSAVVFGHDQQQAVIKAINE 222
>gi|91228271|ref|ZP_01262207.1| polyribonucleotide nucleotidyltransferase [Vibrio alginolyticus
12G01]
gi|269966864|ref|ZP_06180937.1| polyribonucleotide nucleotidyltransferase [Vibrio alginolyticus
40B]
gi|91188148|gb|EAS74450.1| polyribonucleotide nucleotidyltransferase [Vibrio alginolyticus
12G01]
gi|269828531|gb|EEZ82792.1| polyribonucleotide nucleotidyltransferase [Vibrio alginolyticus
40B]
Length = 711
Score = 150 bits (378), Expect = 2e-34, Method: Composition-based stats.
Identities = 42/242 (17%), Positives = 92/242 (38%), Gaps = 18/242 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR+++ +R + + V GS L G+T + TATL + ++ + +
Sbjct: 316 RIDGREKDMVRALDVRTGVLPRTHGSALFTRGETQAIVTATLGTQRDAQIIDELTGERKD 375
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P G + R+ G + R + +V+ + + +
Sbjct: 376 HFLLHYNFPPYCVGETGFVGSPKRREIGHGKL----AKRGIAAVMPSVDEFPYTVRVVSE 431
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ G +AL D ++ + V +G + +
Sbjct: 432 ITESNGSSSMASVCGTSLALMDAGVPIKASVAGIAMGLVKEGDDFVVLSD---------I 482
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T++G I +Q + +++ LN A+ ++ + +
Sbjct: 483 LGDEDHLGDMDFKVAGTNTG-ITALQMDIKIEGITKEIMQIALNQAQGARKHILSVMDEA 541
Query: 238 IS 239
IS
Sbjct: 542 IS 543
Score = 87.2 bits (214), Expect = 2e-15, Method: Composition-based stats.
Identities = 35/228 (15%), Positives = 74/228 (32%), Gaps = 27/228 (11%)
Query: 14 ISLTRRV-SKYAEGSCLVKFGDTHLLTTATLEEKV----PMWIRNTKHGWITAEYGMLPR 68
++L V ++ A + +V DT + + +++ + + T G +P
Sbjct: 17 VTLETGVIARQATAAVMVTMDDTSVFVSVVGKKEAVAGQDFFPLTVNYQERTYAAGKIPG 76
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
R GR R+I R +R + + Q+I + D
Sbjct: 77 GFFKR------EGRPSEGETLTARLIDRPIRPLFPDAFKNEVQVIATVMSVNPDVQPDIV 130
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
+ G A G + A G + G +++ E T +D
Sbjct: 131 TMIGTSAA-------------LAISGIPFNGPIGAARVGHIDGQLVLNPSQTELETSKLD 177
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
T+S ++ V+ +E +++ A + D+ I+ +
Sbjct: 178 LVVAGTES-AVLMVE--SEADNLTEEEMLAAVVYGHDQQQVAIQAINE 222
>gi|270265063|ref|ZP_06193326.1| polyribonucleotide nucleotidyltransferase [Serratia odorifera
4Rx13]
gi|270040997|gb|EFA14098.1| polyribonucleotide nucleotidyltransferase [Serratia odorifera
4Rx13]
Length = 686
Score = 150 bits (378), Expect = 2e-34, Method: Composition-based stats.
Identities = 44/242 (18%), Positives = 90/242 (37%), Gaps = 18/242 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR+++ +R + + V GS L G+T L TATL + + + K
Sbjct: 294 RIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQNLDELMGEKTD 353
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + R+ G + R + +++ + + +
Sbjct: 354 SFLFHYNFPPYSVGETGMVGSPKRREIGHGRL----AKRGVLAMMPKPEDFPYTVRVVSE 409
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ GA +AL D ++ + V + + +
Sbjct: 410 ITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEQDNFVVLSD---------I 460
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D + G I +Q + +++ LN AK ++ + +
Sbjct: 461 LGDEDHLGDMDFKVAGSRDG-ITALQMDIKIEGITREIMQVALNQAKGARLHILGVMEQA 519
Query: 238 IS 239
IS
Sbjct: 520 IS 521
Score = 87.6 bits (215), Expect = 1e-15, Method: Composition-based stats.
Identities = 37/225 (16%), Positives = 74/225 (32%), Gaps = 26/225 (11%)
Query: 20 VSKYAEGSCLVKFGDTHLLTTATLEEKVPM----WIRNTKHGWITAEYGMLPRSTGNRVK 75
+++ A + +V DT + T ++K + + T G +P S R
Sbjct: 2 MARQATAAVMVSMDDTAVFVTVVGQKKAKPGQSFFPLTVNYQERTYAAGRIPGSFFRR-- 59
Query: 76 REAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWV 135
GR R+I R +R + S L Q+I + A+ GA
Sbjct: 60 ----EGRPSEGETLTSRLIDRPIRPLFPDSFLNEVQVIATVVSVNPQVNPDIVAMIGASA 115
Query: 136 ALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTD 195
A G + A G + +++ E +D T
Sbjct: 116 A-------------LSLSGIPFNGPIGAARVGYINNQYVLNPTTDELKESSLDLVVAGT- 161
Query: 196 SGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
+G ++ V+ +E S+D + ++ +I+ +++
Sbjct: 162 AGAVLMVE--SEADVLSEDQMLGAVVFGHEQQQIVIENINSLVAE 204
>gi|152988444|ref|YP_001350781.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas aeruginosa
PA7]
gi|187611271|sp|A6VCJ6|PNP_PSEA7 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|150963602|gb|ABR85627.1| polyribonucleotide nucleotidyltransferase [Pseudomonas aeruginosa
PA7]
Length = 701
Score = 150 bits (378), Expect = 2e-34, Method: Composition-based stats.
Identities = 44/243 (18%), Positives = 90/243 (37%), Gaps = 18/243 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +R + + V GS L G+T L ATL + ++ + +
Sbjct: 316 RIDGRDTRTVRPLRIEVGVLGKTHGSALFTRGETQALVVATLGTARDAQLLDTLEGERKD 375
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + + R+ G + R + +++ I + +
Sbjct: 376 AFMLHYNFPPFSVGECGRMGSPGRREIGHGRL----ARRGVAAMLPTQDEFPYTIRVVSE 431
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ GA +AL D ++ + V +G A+ +
Sbjct: 432 ITESNGSSSMASVCGASLALMDAGVPVKAPVAGIAMGLVKEGEKFAVLTD---------I 482
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D TD G + +Q + +++ L A + +++ V
Sbjct: 483 LGDEDHLGDMDFKVAGTDKG-VTALQMDIKINGITEEIMEIALGQALEARLNILGQMNQV 541
Query: 238 ISN 240
I+
Sbjct: 542 IAR 544
Score = 104 bits (258), Expect = 1e-20, Method: Composition-based stats.
Identities = 38/233 (16%), Positives = 76/233 (32%), Gaps = 28/233 (12%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGMLPR 68
++L +++ A G+ LV D +L T E + + + T G +P
Sbjct: 15 VTLETGRIARQATGAVLVTMDDVSVLVTVVGAKSPAEGRDFFPLSVHYQEKTYAAGRIPG 74
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
R GR + R+I R +R + + Q++ A
Sbjct: 75 GFFKR------EGRPSEKETLTSRLIDRPIRPLFPEGFMNEVQVVCTVVSTNKKSDPDIA 128
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY-PIVDLDYGEDSTIDV 187
A+ G A G + A G I++ Y + + +
Sbjct: 129 AMIGTSAA-------------LAISGIPFAGPIGAARVGFHPEIGYILNPTYEQLQSSSL 175
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
D T+ ++ V+ +E ++D + A D +I+ K++ +
Sbjct: 176 DMVVAGTED-AVLMVE--SEADELTEDQMLGAVLFAHDEFQAVIRAVKELAAE 225
>gi|323499449|ref|ZP_08104421.1| polynucleotide phosphorylase/polyadenylase [Vibrio sinaloensis DSM
21326]
gi|323315505|gb|EGA68544.1| polynucleotide phosphorylase/polyadenylase [Vibrio sinaloensis DSM
21326]
Length = 706
Score = 150 bits (378), Expect = 2e-34, Method: Composition-based stats.
Identities = 43/242 (17%), Positives = 92/242 (38%), Gaps = 18/242 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR+++ +R + + V GS L G+T L TATL + ++ + +
Sbjct: 316 RIDGREKDMVRALDVRTGVLPRTHGSSLFTRGETQALVTATLGTQRDAQIIDELTGERKD 375
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P G + R+ G + R + +V+ + + +
Sbjct: 376 HFLLHYNFPPYCVGETGFVGSPKRREIGHGKL----AKRGIAAVMPSVDEFPYTVRVVSE 431
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ G +AL D ++ + V +G + +
Sbjct: 432 ITESNGSSSMASVCGTSLALMDAGVPIKSSVAGIAMGLVKEGDDFVVLSD---------I 482
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T++G I +Q + +++ LN A+ ++ + +
Sbjct: 483 LGDEDHLGDMDFKVAGTNTG-ITALQMDIKIEGITKEIMQIALNQAQGARKHILSVMDEA 541
Query: 238 IS 239
IS
Sbjct: 542 IS 543
Score = 89.9 bits (221), Expect = 2e-16, Method: Composition-based stats.
Identities = 35/228 (15%), Positives = 73/228 (32%), Gaps = 27/228 (11%)
Query: 14 ISLTRRV-SKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKHGWITAEYGMLPR 68
++L V ++ A + +V DT + + + E + + T G +P
Sbjct: 17 VTLETGVIARQATAAVMVTMDDTAVFVSVVGKKEAVEGQDFFPLTVNYQERTYAAGKIPG 76
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
R GR R+I R +R + + Q+I + D
Sbjct: 77 GFFKR------EGRPSEGETLTARLIDRPIRPLFPDAFKNEVQVIATVVSVNPDVQPDIP 130
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
+ G A G + A G + G +++ E T +D
Sbjct: 131 TMIGTSAA-------------LAISGIPFNGPIGAARVGHIDGQLVLNPSNTELETSKLD 177
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
T+S ++ V+ +E +++ + + D+ +I +
Sbjct: 178 LVVAGTES-AVLMVE--SEADNLTEEEMLSAVVFGHDQQQAVINAINE 222
>gi|254507523|ref|ZP_05119657.1| 3' exoribonuclease family, domain 2, protein [Vibrio
parahaemolyticus 16]
gi|219549593|gb|EED26584.1| 3' exoribonuclease family, domain 2, protein [Vibrio
parahaemolyticus 16]
Length = 709
Score = 150 bits (378), Expect = 2e-34, Method: Composition-based stats.
Identities = 43/242 (17%), Positives = 92/242 (38%), Gaps = 18/242 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR+++ +R + + V GS L G+T L TATL + ++ + +
Sbjct: 316 RIDGREKDMVRALDVRTGVLPRTHGSSLFTRGETQALVTATLGTQRDAQIIDELTGERKD 375
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P G + R+ G + R + +V+ + + +
Sbjct: 376 HFLLHYNFPPYCVGETGFVGSPKRREIGHGKL----AKRGIAAVMPSVDEFPYTVRVVSE 431
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ G +AL D ++ + V +G + +
Sbjct: 432 ITESNGSSSMASVCGTSLALMDAGVPIKSSVAGIAMGLVKEGDDFVVLSD---------I 482
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T++G I +Q + +++ LN A+ ++ + +
Sbjct: 483 LGDEDHLGDMDFKVAGTNTG-ITALQMDIKIEGITKEIMQIALNQAQGARKHILSVMDEA 541
Query: 238 IS 239
IS
Sbjct: 542 IS 543
Score = 90.3 bits (222), Expect = 2e-16, Method: Composition-based stats.
Identities = 35/228 (15%), Positives = 73/228 (32%), Gaps = 27/228 (11%)
Query: 14 ISLTRRV-SKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKHGWITAEYGMLPR 68
++L V ++ A + +V DT + + + E + + T G +P
Sbjct: 17 VTLETGVIARQATAAVMVTMDDTAVFVSVVGKKEAVEGQDFFPLTVNYQERTYAAGKIPG 76
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
R GR R+I R +R + + Q+I + D
Sbjct: 77 GFFKR------EGRPSEGETLTARLIDRPIRPLFPDAFKNEVQVIATVVSVNPDVQPDIV 130
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
+ G A G + A G + G +++ E +D
Sbjct: 131 TMIGTSAA-------------LAISGIPFNGPIGAARVGHIDGQLVLNPSNTELEASKLD 177
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
T+S ++ V+ +E +++ + + D+ +IK +
Sbjct: 178 LVVAGTES-AVLMVE--SEADNLTEEEMLSAVVFGHDQQQAVIKAINE 222
>gi|86747731|ref|YP_484227.1| polynucleotide phosphorylase/polyadenylase [Rhodopseudomonas
palustris HaA2]
gi|123099194|sp|Q2J2J4|PNP_RHOP2 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|86570759|gb|ABD05316.1| Polyribonucleotide nucleotidyltransferase [Rhodopseudomonas
palustris HaA2]
Length = 718
Score = 150 bits (378), Expect = 2e-34, Method: Composition-based stats.
Identities = 51/241 (21%), Positives = 90/241 (37%), Gaps = 18/241 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +R I V A GS L G+T L TL +E+ + T
Sbjct: 316 RIDGRDSKTVRSIIAEAGVLPRAHGSALFTRGETQALVVTTLGTGEDEQYVDSLAGTYKE 375
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + R+ G + RA+R V+ I + +
Sbjct: 376 TFLLHYNFPPYSVGETGRLGGTKRREIGHGKL----AWRAIRPVLPPHHEFPYTIRVVSE 431
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ GA +AL D ++ + + +L+G A+ +
Sbjct: 432 ITESNGSSSMASVCGASLALMDAGVPLKRPTAGIAMGLILEGERFAVLSD---------I 482
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T+ G I +Q + A +++ L AKD ++
Sbjct: 483 LGDEDHLGDMDFKVAGTEQG-ITSLQMDIKIAGITEEIMKVALGQAKDGRIHILGEMSKA 541
Query: 238 I 238
+
Sbjct: 542 L 542
Score = 111 bits (277), Expect = 8e-23, Method: Composition-based stats.
Identities = 37/235 (15%), Positives = 76/235 (32%), Gaps = 28/235 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTKHGWITAEYGML 66
R + L V++ A+G+ + +G+T +L T T E V + T G +
Sbjct: 14 RPLKLETGKVARQADGAVVATYGETIVLATVVAAKTPREGVDFLPLTVDYQEKTYAAGRI 73
Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
P R GR + + R+I R +R + Q+I+ +
Sbjct: 74 PGGYFKR------EGRPTEKETLVSRLIDRPIRPLFADGWRNETQVIVTVLSHDMENDPD 127
Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
A+ A A KG + A G + +++ E
Sbjct: 128 ILAMVAASAA-------------LTLSGAPFKGPIGAARVGFINDEYVLNPVLDEMPETQ 174
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
++ T ++ V+ A+ S++ + +I + ++ +
Sbjct: 175 LELVVAGTAD-AVLMVESEAKE--LSEEIMLGAVMFGHRHFQPVIDAIIE-LAEK 225
>gi|257870995|ref|ZP_05650648.1| polyribonucleotide nucleotidyltransferase [Enterococcus gallinarum
EG2]
gi|257805159|gb|EEV33981.1| polyribonucleotide nucleotidyltransferase [Enterococcus gallinarum
EG2]
Length = 705
Score = 150 bits (378), Expect = 2e-34, Method: Composition-based stats.
Identities = 44/243 (18%), Positives = 86/243 (35%), Gaps = 18/243 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56
+R GR+ +++R ++ + GS L G T L+ T E ++ + +
Sbjct: 318 IRPDGRKLDEIRPLASEVGLLPRVHGSGLFTRGQTQALSACTLAPLGEHQIIDGLGVEES 377
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y S G+ + + R+ G RAL V+ I +
Sbjct: 378 KRFIHHYNFPQFSVGSTGRAGSPGRREIGHGALG----ERALAQVIPSEEDFPYTIRLVA 433
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V++++G + A+I +AL D ++ + V G + D
Sbjct: 434 EVLESNGSSSQASICAGTLALMDAGVPIKAPVAGIAMGLVSDGE---------NYTILTD 484
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T G I +Q + ++ L+ AK +++
Sbjct: 485 IQGLEDHLGDMDFKVAGTKDG-ITALQMDIKIQGITEQILTEALSQAKKARMEILNELTS 543
Query: 237 VIS 239
I+
Sbjct: 544 TIA 546
Score = 114 bits (286), Expect = 7e-24, Method: Composition-based stats.
Identities = 41/232 (17%), Positives = 85/232 (36%), Gaps = 26/232 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEK---VPMWIRNTKHGWITAEYGMLP 67
R + + ++K A G+ LV++GDT +L+ A ++ + + G +P
Sbjct: 14 RPLQVEVGQLAKQANGAVLVRYGDTVVLSAAVASKEAKDTDFFPLTINYEEKMYAVGKVP 73
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R GR + R+I R +R + Q+ ++ D
Sbjct: 74 GGFIKR------EGRPSTEATLTARLIDRPIRPMFADGFRNEVQVTNIVMSVEQDCSPAM 127
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
AA+ G+ +A G +A + G + G +++ + D+
Sbjct: 128 AAMLGSSLA-------------LSISDVPFDGPIAGVEVGRVNGEYVLNPTVEQAEQTDI 174
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
+ T I V+ A+ S+D L + I +L+ Q+++++
Sbjct: 175 ELTVAGTKK-AINMVESGAKE--VSEDDMLGALLFGFEAIKELVAFQEEIVA 223
>gi|254229311|ref|ZP_04922728.1| 3' exoribonuclease family, domain 2 [Vibrio sp. Ex25]
gi|262393386|ref|YP_003285240.1| polyribonucleotide nucleotidyltransferase [Vibrio sp. Ex25]
gi|151938119|gb|EDN56960.1| 3' exoribonuclease family, domain 2 [Vibrio sp. Ex25]
gi|262336980|gb|ACY50775.1| polyribonucleotide nucleotidyltransferase [Vibrio sp. Ex25]
Length = 711
Score = 150 bits (378), Expect = 2e-34, Method: Composition-based stats.
Identities = 42/242 (17%), Positives = 92/242 (38%), Gaps = 18/242 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR+++ +R + + V GS L G+T + TATL + ++ + +
Sbjct: 316 RIDGREKDMVRALDVRTGVLPRTHGSALFTRGETQAIVTATLGTQRDAQIIDELTGERKD 375
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P G + R+ G + R + +V+ + + +
Sbjct: 376 HFLLHYNFPPYCVGETGFVGSPKRREIGHGKL----AKRGIAAVMPSVDEFPYTVRVVSE 431
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ G +AL D ++ + V +G + +
Sbjct: 432 ITESNGSSSMASVCGTSLALMDAGVPIKSSVAGIAMGLVKEGDDFVVLSD---------I 482
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T++G I +Q + +++ LN A+ ++ + +
Sbjct: 483 LGDEDHLGDMDFKVAGTNTG-ITALQMDIKIEGITKEIMQIALNQAQGARKHILSVMDEA 541
Query: 238 IS 239
IS
Sbjct: 542 IS 543
Score = 88.0 bits (216), Expect = 1e-15, Method: Composition-based stats.
Identities = 36/228 (15%), Positives = 74/228 (32%), Gaps = 27/228 (11%)
Query: 14 ISLTRRV-SKYAEGSCLVKFGDTHLLTTATLEEKV----PMWIRNTKHGWITAEYGMLPR 68
++L V ++ A + +V DT + + +++ + + T G +P
Sbjct: 17 VTLETGVIARQATAAVMVTMDDTSVFVSVVGKKEAVAGQDFFPLTVNYQERTYAAGKIPG 76
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
R GR R+I R +R + + Q+I + D
Sbjct: 77 GFFKR------EGRPSEGETLTARLIDRPIRPLFPDAFKNEVQVIATVMSVNPDVQPDIV 130
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
+ G A G + A G + G +++ E T +D
Sbjct: 131 TMIGTSAA-------------LAISGIPFNGPIGAARVGHIDGQLVLNPSQTELETSKLD 177
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
T+S ++ V+ +E +++ A + D+ IK +
Sbjct: 178 LVVAGTES-AVLMVE--SEADNLTEEEMLAAVVYGHDQQQVAIKAINE 222
>gi|315638718|ref|ZP_07893892.1| polyribonucleotide nucleotidyltransferase [Campylobacter
upsaliensis JV21]
gi|315481342|gb|EFU71972.1| polyribonucleotide nucleotidyltransferase [Campylobacter
upsaliensis JV21]
Length = 736
Score = 150 bits (378), Expect = 2e-34, Method: Composition-based stats.
Identities = 51/252 (20%), Positives = 88/252 (34%), Gaps = 27/252 (10%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWI------RNTK 55
R GR N++R I + + A GSCL G T L ATL + + +N
Sbjct: 358 RADGRNLNEVRAIEIETNILPNAHGSCLFTRGQTQALVVATLGGENDAQMVDLLSEKNPI 417
Query: 56 HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115
Y S G +A R+ G RAL V + +
Sbjct: 418 SERFMVNYNFPGFSVGEASPIKAPGRRELGHGNL----AKRALYPSV--DENYPYVVRLV 471
Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIV 175
++++++G + A + G +AL + VL+ + AI ++
Sbjct: 472 SEILESNGSSSMATVCGGSLALRAAGVPSIKLVAGVAMGLVLEDNDYAILTDIM------ 525
Query: 176 DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
ED D+D T G I +Q + ++ L A++ ++ L +
Sbjct: 526 ---GLEDHDGDMDFKVAGTKDG-ITALQMDIKLGGIDENILKNALYQAREARLHILDLME 581
Query: 236 DV-----ISNEV 242
+ I+ EV
Sbjct: 582 EANSQIIINEEV 593
Score = 75.3 bits (183), Expect = 7e-12, Method: Composition-based stats.
Identities = 35/248 (14%), Positives = 74/248 (29%), Gaps = 50/248 (20%)
Query: 20 VSKYAEGSCLVKFGDTHLLTTATLEE---KVPMWIRNTKHGWITAEYGMLPRSTGNRVKR 76
V+K A GS L++ G + +L T E+ + ++ G +P R
Sbjct: 38 VAKQAAGSVLMRVGKSVVLATVAREDKQVEEDFLPLTVQYIEKAYAVGRIPGGYIKR--- 94
Query: 77 EAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVA 136
+ G R+I R+LR + QI++ + + ++ A VA
Sbjct: 95 ---ETKPGDNETLTARIIDRSLRPLFPKGYAYPTQIVVMVLSADDEVDLQVMSLNAASVA 151
Query: 137 LHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDS 196
L+ +K V + + +++ + +D
Sbjct: 152 LY-------------LSGIPIKAPVCGVRIARINDEFVLNPSNSKLKESTLDLYVAGVKD 198
Query: 197 GHIVEVQGSAE---------------------------RATFSQDHFFAMLNLAKDRIAD 229
++ ++ A S+D L++AK I +
Sbjct: 199 -ELLMIEMRALPSESEGEAMVETSFAEALAGTSIYEQVINELSEDEILQALSVAKKAILN 257
Query: 230 LIKLQKDV 237
++
Sbjct: 258 GSNAYEEA 265
>gi|303248250|ref|ZP_07334513.1| polyribonucleotide nucleotidyltransferase [Desulfovibrio
fructosovorans JJ]
gi|302490388|gb|EFL50299.1| polyribonucleotide nucleotidyltransferase [Desulfovibrio
fructosovorans JJ]
Length = 751
Score = 150 bits (378), Expect = 2e-34, Method: Composition-based stats.
Identities = 44/243 (18%), Positives = 89/243 (36%), Gaps = 18/243 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTKH 56
+RL GR +R I + V GS + G+T L A T +E+ + +
Sbjct: 320 IRLDGRDTKTVRPIGIEVGVLPRTHGSTIFARGETKSLCVATLGSTGDEQKIETLNGETY 379
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P G S R+ G R++ V+ + + +
Sbjct: 380 KRFMLHYNFPPYCVGEVKPMRGPSRREIGHGAL----AERSILPVLPGADEFPFTMRVVS 435
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
V++++G + A++ GA +AL D +++ + + +G +
Sbjct: 436 QVMESNGSSSMASVCGASLALMDAGVPVKEPVAGIAMGLIKEGDDFLVLTD--------- 486
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED+ D+D T +G + +Q + Q L+ AK+ ++ +
Sbjct: 487 ILGDEDAMGDMDFKVAGTANG-VTGIQMDIKITGIPQAVMRQALSQAKEARLHILGRMAE 545
Query: 237 VIS 239
V++
Sbjct: 546 VLA 548
Score = 100 bits (248), Expect = 2e-19, Method: Composition-based stats.
Identities = 45/232 (19%), Positives = 79/232 (34%), Gaps = 25/232 (10%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTAT---LEEKVPMWIRNTKHGWITAEYGMLPRS 69
+ L ++ A+G+ V+ G T +L TA L E+ + + ++ G +P S
Sbjct: 19 VILETGRLANQADGAVWVQSGGTVVLVTACTQVLPEEKGFFPLTVDYQEMSYAAGRIPGS 78
Query: 70 TGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAA 129
R GR R + R+I R R + QII A
Sbjct: 79 YFRR-----EIGRPSEREVLVCRLIDRPCRPLFPKGFRDEVQIIATVLSADGVVEPDVLA 133
Query: 130 ITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDA 189
+T A ALH +G +A G + G + + + +
Sbjct: 134 LTAASSALH-------------ISKIPFEGPIAGGRVGYVDGAFVFNPTVQQMNGESTLN 180
Query: 190 NFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
+V V+G + S+D L + + LI LQ++ + +
Sbjct: 181 LVFAASRDAVVMVEGGGQ--FVSEDMLADALEWGHNSVQPLIDLQEE-LREK 229
>gi|157368740|ref|YP_001476729.1| polynucleotide phosphorylase/polyadenylase [Serratia proteamaculans
568]
gi|187611288|sp|A8G911|PNP_SERP5 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|157320504|gb|ABV39601.1| Polyribonucleotide nucleotidyltransferase [Serratia proteamaculans
568]
Length = 705
Score = 150 bits (378), Expect = 2e-34, Method: Composition-based stats.
Identities = 44/242 (18%), Positives = 90/242 (37%), Gaps = 18/242 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR+++ +R + + V GS L G+T L TATL + + + K
Sbjct: 315 RIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQNLDELMGEKTD 374
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + R+ G + R + +++ + + +
Sbjct: 375 SFLFHYNFPPYSVGETGMVGSPKRREIGHGRL----AKRGVLAMMPKPEDFPYTVRVVSE 430
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ GA +AL D ++ + V + + +
Sbjct: 431 ITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEQDNFVVLSD---------I 481
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D + G I +Q + +++ LN AK ++ + +
Sbjct: 482 LGDEDHLGDMDFKVAGSRDG-ITALQMDIKIEGITREIMQVALNQAKGARLHILGVMEQA 540
Query: 238 IS 239
IS
Sbjct: 541 IS 542
Score = 93.0 bits (229), Expect = 3e-17, Method: Composition-based stats.
Identities = 36/232 (15%), Positives = 77/232 (33%), Gaps = 27/232 (11%)
Query: 14 ISLTRRV-SKYAEGSCLVKFGDTHLLTTATLEEKVPM----WIRNTKHGWITAEYGMLPR 68
+++ + ++ A + +V DT + T ++K + + T G +P
Sbjct: 16 LTIETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQSFFPLTVNYQERTYAAGRIPG 75
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
S R GR R+I R +R + S L Q+I +
Sbjct: 76 SFFRR------EGRPSEGETLTSRLIDRPIRPLFPDSFLNEVQVIATVVSLNPQVNPDIV 129
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+ GA A G + + G + +++ E +D
Sbjct: 130 AMIGASAA-------------LSLSGIPFNGPIGSARVGYINNQYVLNPTSDELKESSLD 176
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
T +G ++ V+ +E S+D + ++ +I+ +++
Sbjct: 177 LVVAGT-AGAVLMVE--SEADVLSEDQMLGAVVFGHEQQQIVIENINSLVAE 225
>gi|260775173|ref|ZP_05884071.1| polyribonucleotide nucleotidyltransferase [Vibrio coralliilyticus
ATCC BAA-450]
gi|260608874|gb|EEX35036.1| polyribonucleotide nucleotidyltransferase [Vibrio coralliilyticus
ATCC BAA-450]
Length = 710
Score = 150 bits (378), Expect = 2e-34, Method: Composition-based stats.
Identities = 43/242 (17%), Positives = 92/242 (38%), Gaps = 18/242 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR+++ +R + + V GS L G+T L TATL + ++ + +
Sbjct: 316 RIDGREKDMVRALDVRTGVLPRTHGSSLFTRGETQALVTATLGTQRDAQIIDELTGERKD 375
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P G + R+ G + R + +V+ + + +
Sbjct: 376 HFLLHYNFPPYCVGETGFVGSPKRREIGHGKL----AKRGIAAVMPSVDEFPYTVRVVSE 431
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ G +AL D ++ + V +G + +
Sbjct: 432 ITESNGSSSMASVCGTSLALMDAGVPIKSSVAGIAMGLVKEGDDFVVLSD---------I 482
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T++G I +Q + +++ LN A+ ++ + +
Sbjct: 483 LGDEDHLGDMDFKVAGTNTG-ITALQMDIKIEGITKEIMQIALNQAQGARKHILSVMDEA 541
Query: 238 IS 239
IS
Sbjct: 542 IS 543
Score = 89.9 bits (221), Expect = 3e-16, Method: Composition-based stats.
Identities = 35/228 (15%), Positives = 73/228 (32%), Gaps = 27/228 (11%)
Query: 14 ISLTRRV-SKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKHGWITAEYGMLPR 68
++L V ++ A + +V DT + + + E + + T G +P
Sbjct: 17 VTLETGVIARQATAAVMVTMDDTAVFVSVVGKKEAVEGQDFFPLTVNYQERTYAAGKIPG 76
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
R GR R+I R +R + + Q+I + D
Sbjct: 77 GFFKR------EGRPSEGETLTARLIDRPIRPLFPDAFKNEVQVIATVVSVNPDVQPDIV 130
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
+ G A G + A G + G +++ E T +D
Sbjct: 131 TMIGTSAA-------------LAISGIPFNGPIGAARVGHIDGQLVLNPSNTELETSKLD 177
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
T+ G ++ V+ +E +++ + + D+ +I +
Sbjct: 178 LVVAGTE-GAVLMVE--SEADNLTEEEMLSAVVYGHDQQQVVINAINE 222
>gi|288574757|ref|ZP_06393114.1| Polyribonucleotide nucleotidyltransferase [Dethiosulfovibrio
peptidovorans DSM 11002]
gi|288570498|gb|EFC92055.1| Polyribonucleotide nucleotidyltransferase [Dethiosulfovibrio
peptidovorans DSM 11002]
Length = 749
Score = 150 bits (378), Expect = 2e-34, Method: Composition-based stats.
Identities = 47/245 (19%), Positives = 92/245 (37%), Gaps = 20/245 (8%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL-----EEKVPMWIR-NTK 55
R GR+ +++R +S V GS + G+T L TATL ++++ ++ N
Sbjct: 312 RADGRKTDELRSLSCEVDVLPKVHGSAVFTRGETQSLATATLGMLGEDDQLIDGLKHNEP 371
Query: 56 HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115
+ Y P S G R+ G RAL ++ + +
Sbjct: 372 NKSFLLHYNFPPYSVGEVRPMRGPGRREIGHGAL----AERALTPIIPDDTEFPYVVRVV 427
Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIV 175
D+++++G + A+I G +AL ++ + + +G +
Sbjct: 428 SDILESNGSSSQASICGGSLALMSAGVPIKRHVAGIAMGLIKEGDDVVVLTD-------- 479
Query: 176 DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
+ ED D+D T G + +Q + +++ L AKD ++ + +
Sbjct: 480 -IQGLEDHYGDMDFKVAGTREG-VTALQMDNKAGGITREILKQALGQAKDARMAILDVME 537
Query: 236 DVISN 240
ISN
Sbjct: 538 QAISN 542
Score = 98.8 bits (244), Expect = 6e-19, Method: Composition-based stats.
Identities = 44/227 (19%), Positives = 74/227 (32%), Gaps = 27/227 (11%)
Query: 13 EISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT----KHGWITAEYGMLP 67
E+ V+K A GS + GDT +LTTA + +K + G +P
Sbjct: 13 ELVFETGKVAKQANGSVWARQGDTVILTTACMTDKPREGLDFFPLLVDFEERFYSAGKIP 72
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R GR + R+I R++RS+ + ++ +
Sbjct: 73 GGFIKR------EGRPSQTAILSARVIDRSIRSLFESWMRHDVHVVSTVLSVDQHNPPNI 126
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
AI A A G V A+ G + G +V+ +
Sbjct: 127 LAINAASAA-------------LTISDIPWGGPVGAVRIGYIDGSLVVNPTEEMMENSSL 173
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
+ G I V+ A+ +D + LA+ I ++ LQ
Sbjct: 174 ELVVSGHSDG-ITMVEAGAQEVP--EDLLVDAMELAQGEIKRIVDLQ 217
>gi|71891895|ref|YP_277625.1| polynucleotide phosphorylase/polyadenylase [Candidatus Blochmannia
pennsylvanicus str. BPEN]
gi|123747829|sp|Q493T3|PNP_BLOPB RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|71796001|gb|AAZ40752.1| polynucleotide phosphorylase [Candidatus Blochmannia pennsylvanicus
str. BPEN]
Length = 699
Score = 150 bits (378), Expect = 2e-34, Method: Composition-based stats.
Identities = 43/239 (17%), Positives = 89/239 (37%), Gaps = 10/239 (4%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+R+ GR ++ +R+I + + GS L GDT L TL + + G
Sbjct: 316 LRIDGRSQDTIRKIDIKTGILPRTHGSALFTRGDTQALVAVTLGTERDAQNIDGLTGIRV 375
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
+ + V V G R R+ R + +V+ + I + ++ +
Sbjct: 376 DRFLLHYNFPPYCVGEIGVIGAPKRREIGHGRLAKRGMLAVMPNANEFPYTIRVVSEITE 435
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
++G + A+I G +AL D ++ + + +G+ + ++
Sbjct: 436 SNGSSSMASICGTSLALMDAGVPIKAAVAGVAMGLIKEGNDFVVLSDIVS---------D 486
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
ED D+D + G I +Q + + D L AK+ ++ + + +I
Sbjct: 487 EDHIGDMDFKVSGSRQG-ITALQMDIKTDGITYDIINIALKKAKNARLQILDVMEQIIK 544
Score = 81.4 bits (199), Expect = 1e-13, Method: Composition-based stats.
Identities = 39/226 (17%), Positives = 72/226 (31%), Gaps = 30/226 (13%)
Query: 20 VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----HGWITAEYGMLPRSTGNRVK 75
+++ A + +V DT +L T +V + + T G P R
Sbjct: 23 IARQANAAVMVSMSDTTVLVTVVSSNQVRLEQDFFPLVVNYQERTYAAGKFPGGFFRR-- 80
Query: 76 REAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWV 135
GR R+I R +R + + Q++ + AI G
Sbjct: 81 ----EGRPSENETLTSRLIDRPIRPLFPKGFINDVQVVATVVSVNPQVNPDIVAIIGVSA 136
Query: 136 ALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTD 195
A G + A G + +++ E S +D T+
Sbjct: 137 A-------------LSLSDIPFFGPIGAARVGYIKNQYVLNPTTTELSNSKLDLVISGTE 183
Query: 196 SGHIVEVQGSAERATFSQDHFFAMLNLAKDR----IADLIKLQKDV 237
S +I+ V+ +E S+ + ++ I ++ KL K V
Sbjct: 184 S-NILMVE--SESCLLSEKEILDAIIFGHEQQQIVIHNINKLVKKV 226
>gi|261253862|ref|ZP_05946435.1| polyribonucleotide nucleotidyltransferase [Vibrio orientalis CIP
102891]
gi|260937253|gb|EEX93242.1| polyribonucleotide nucleotidyltransferase [Vibrio orientalis CIP
102891]
Length = 710
Score = 150 bits (378), Expect = 2e-34, Method: Composition-based stats.
Identities = 42/242 (17%), Positives = 91/242 (37%), Gaps = 18/242 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR+++ +R + + V GS L G+T + TATL + ++ + +
Sbjct: 316 RIDGREKDMVRALDVRTGVLPRTHGSSLFTRGETQAIVTATLGTQRDAQIIDELTGERKD 375
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P G + R+ G + R + +V+ + + +
Sbjct: 376 HFLLHYNFPPYCVGETGFVGSPKRREIGHGKL----AKRGIAAVMPSVDEFPYTVRVVSE 431
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ G +AL D ++ + V +G + +
Sbjct: 432 ITESNGSSSMASVCGTSLALMDAGVPIKASVAGIAMGLVKEGDDFVVLSD---------I 482
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T+ G I +Q + +++ LN A+ ++ + +
Sbjct: 483 LGDEDHLGDMDFKVAGTNDG-ITALQMDIKIEGITKEIMQIALNQAQGARKHILSVMDEA 541
Query: 238 IS 239
IS
Sbjct: 542 IS 543
Score = 91.1 bits (224), Expect = 1e-16, Method: Composition-based stats.
Identities = 35/228 (15%), Positives = 74/228 (32%), Gaps = 27/228 (11%)
Query: 14 ISLTRRV-SKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKHGWITAEYGMLPR 68
++L V ++ A + +V DT + + + E + + T G +P
Sbjct: 17 VTLETGVIARQATAAVMVTMDDTSVFVSVVGKKEAVEGQDFFPLTVNYQERTYAAGKIPG 76
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
R GR R+I R +R + + Q+I + D
Sbjct: 77 GFFKR------EGRPSEGETLTARLIDRPIRPLFPDAFKNEVQVIATVMSVNPDVQPDMV 130
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
+ G A G + A G + G +++ E +T +D
Sbjct: 131 TMIGTSAA-------------LAISGIPFNGPIGAARVGHIDGQLVLNPSNTELATSKLD 177
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
T+ G ++ V+ +E +++ + + D+ +I +
Sbjct: 178 LVVAGTE-GAVLMVE--SEADNLTEEEMLSAVVFGHDQQQVVISAINE 222
>gi|91974709|ref|YP_567368.1| polynucleotide phosphorylase/polyadenylase [Rhodopseudomonas
palustris BisB5]
gi|123749482|sp|Q13EM2|PNP_RHOPS RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|91681165|gb|ABE37467.1| Polyribonucleotide nucleotidyltransferase [Rhodopseudomonas
palustris BisB5]
Length = 722
Score = 150 bits (378), Expect = 2e-34, Method: Composition-based stats.
Identities = 50/241 (20%), Positives = 90/241 (37%), Gaps = 18/241 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +R I V A GS L G+T L TL +E+ + T
Sbjct: 316 RIDGRDSKTVRSIIAEAGVLPRAHGSALFTRGETQALVVTTLGTGEDEQYVDSLAGTYKE 375
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + R+ G + RA+R V+ I + +
Sbjct: 376 TFLLHYNFPPYSVGETGRLGGTKRREIGHGKL----AWRAIRPVLPPHHEFPYTIRVVSE 431
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ GA +AL D ++ + + +L+G A+ +
Sbjct: 432 ITESNGSSSMASVCGASLALMDAGVPLKRPTAGIAMGLILEGERFAVLSD---------I 482
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T+ G + +Q + A +++ L AKD ++
Sbjct: 483 LGDEDHLGDMDFKVAGTEQG-VTSLQMDIKIAGITEEIMKVALGQAKDGRIHILGEMSKA 541
Query: 238 I 238
+
Sbjct: 542 L 542
Score = 114 bits (284), Expect = 1e-23, Method: Composition-based stats.
Identities = 37/235 (15%), Positives = 75/235 (31%), Gaps = 28/235 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTKHGWITAEYGML 66
R + L V++ A+G+ + +G+T +L T T E V + T G +
Sbjct: 14 RPLRLETGKVARQADGAVVATYGETVVLATVVAAKTPREGVDFLPLTVDYQEKTYAAGRI 73
Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
P R GR + + R+I R +R + Q+I+ +
Sbjct: 74 PGGYFKR------EGRPTEKETLVSRLIDRPIRPLFADGWRNETQVIVTVLSHDMENDPD 127
Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
A+ + A KG + A G + +++ E
Sbjct: 128 ILALVASSAA-------------LTLSGAPFKGPIGAARVGFINDEYVLNPVLDEMPETQ 174
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
+D T ++ V+ A+ S++ + +I ++ +
Sbjct: 175 LDLVVAGTSD-AVLMVESEAKE--LSEEIMLGAVMFGHRHFQPVIDAI-IALAEK 225
>gi|238897558|ref|YP_002923237.1| polynucleotide phosphorylase/polyadenylase [Candidatus Hamiltonella
defensa 5AT (Acyrthosiphon pisum)]
gi|259534133|sp|C4K3E6|PNP_HAMD5 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|229465315|gb|ACQ67089.1| polynucleotide phosphorylase/polyadenylase [Candidatus Hamiltonella
defensa 5AT (Acyrthosiphon pisum)]
Length = 716
Score = 150 bits (378), Expect = 2e-34, Method: Composition-based stats.
Identities = 45/243 (18%), Positives = 90/243 (37%), Gaps = 18/243 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR ++ +R + + GS L G+T L T TL + + + +
Sbjct: 315 RIDGRDKDMIRALHACTGILPRTHGSALFTRGETQALVTTTLGTSRDLQTIDDLMGERSD 374
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + R+ G ++ RAL +V+ + + +
Sbjct: 375 SFLFHYNFPPYSVGETGMLGSPKRREIGHARL----AKRALMAVMPNIEEFPYTVRVVSE 430
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ GA +AL D ++ + V + + +
Sbjct: 431 ITESNGSSSMASVCGASLALMDAGVPIKSAVAGIAMGLVKEEDKFVVLSD---------I 481
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T G I +Q + + + + L+ AK ++ + V
Sbjct: 482 LGDEDHLGDMDFKVAGTSEG-ITALQMDMKIQGITPEIMQSALHHAKAARLHILSVMNQV 540
Query: 238 ISN 240
IS+
Sbjct: 541 ISS 543
Score = 88.7 bits (218), Expect = 6e-16, Method: Composition-based stats.
Identities = 28/233 (12%), Positives = 75/233 (32%), Gaps = 27/233 (11%)
Query: 13 EISLTRRV-SKYAEGSCLVKFGDTHLLTTATLEEKVPM----WIRNTKHGWITAEYGMLP 67
++++ + ++ A + +V T +L T +++ + + + + G +P
Sbjct: 15 KVTIETGMMARQATAAVMVIIEGTAVLVTVVAQKEAKPGQTFFPLSVHYQERSYAVGRIP 74
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
+ R R R+I R +R + L Q+I +
Sbjct: 75 SNFFRR------ETRPNEGETLTSRLIDRPIRPLFPKDFLNEVQVIATVVSVNPKVNPDI 128
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
A+ G + + A G + G +++ E D+
Sbjct: 129 VAMIG-------------ASAVLSLSGIPFHEPIGAARVGFINGAYVLNPTPEELKQSDL 175
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
+ T + ++ V+ A +++ + ++ +I+ D++
Sbjct: 176 NLVVAGTKN-AVLMVESEANI--LTEEQMLGAIIFGHEQQQIVIESINDLVKK 225
>gi|224531821|ref|ZP_03672453.1| polyribonucleotide nucleotidyltransferase
(Polynucleotidephosphorylase) [Borrelia valaisiana
VS116]
gi|224511286|gb|EEF81692.1| polyribonucleotide nucleotidyltransferase
(Polynucleotidephosphorylase) [Borrelia valaisiana
VS116]
Length = 722
Score = 150 bits (378), Expect = 2e-34, Method: Composition-based stats.
Identities = 46/244 (18%), Positives = 87/244 (35%), Gaps = 19/244 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
+R GR N++R+I + GS L G+T L TL +E++ I K
Sbjct: 315 IRTDGRTPNEIRDIIAEVDILSRTHGSALFTRGETQALAVTTLGTSIDEQIMDDIDGDKR 374
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P S G + R+ G RAL S+V I +
Sbjct: 375 LNFMLHYNFPPFSVGETGRLMTGR-REIGHGHL----AQRALESMVPGKNDFPYTIRVVS 429
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
++++++G + A + ++L ++ + + +G +
Sbjct: 430 EILESNGSSSMATVCAGSMSLMSAGVPVKRQVAGIAMGLISEGDKYVVLSD--------- 480
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T +G I Q + +++ L A+ ++ +
Sbjct: 481 ILGEEDHLGDMDFKVAGTKNG-ITGFQMDIKIENVTKNLMRDALEQARVGRIHILSIMDA 539
Query: 237 VISN 240
VIS+
Sbjct: 540 VISD 543
Score = 108 bits (270), Expect = 6e-22, Method: Composition-based stats.
Identities = 46/240 (19%), Positives = 81/240 (33%), Gaps = 32/240 (13%)
Query: 5 GRQENQMREISLTRRV-SKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----HGWI 59
GR E+ + +K A GS L +G + +L T V + +
Sbjct: 10 GRD-----ELVFETGLMAKQANGSVLATYGGSSVLATVCCSSNVREDLDFVPLSVEYNEK 64
Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119
G +P R G+ + + R+I R +R + D Q+I
Sbjct: 65 YYAAGKIPGGFIKR------EGKPKDKEILVSRLIDRPMRPLFDKRFGREIQVIPTTLAT 118
Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179
+ A+ A+ G +AA+ L G IV+ +
Sbjct: 119 DQLNPPDIVGMNAAFTAVF-------------LSDIPFSGPIAAVRMVYLNGEFIVNPSF 165
Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
E D+D + +G I V+G A S+D + ++ A + I + QK+ +
Sbjct: 166 EEIHDSDLDIVVAGSLNG-ITMVEGGANE--VSEDILLSAIDGAHEYIKQICNAQKEFLE 222
>gi|163802308|ref|ZP_02196202.1| polynucleotide phosphorylase/polyadenylase [Vibrio sp. AND4]
gi|159173837|gb|EDP58651.1| polynucleotide phosphorylase/polyadenylase [Vibrio sp. AND4]
Length = 710
Score = 150 bits (378), Expect = 2e-34, Method: Composition-based stats.
Identities = 41/242 (16%), Positives = 91/242 (37%), Gaps = 18/242 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR+++ +R + + V GS L G+T + TATL + ++ + +
Sbjct: 316 RIDGREKDMVRALDVRTGVLPRTHGSALFTRGETQAIVTATLGTQRDAQIIDELTGERKD 375
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P G + R+ G + R + +V+ + + +
Sbjct: 376 NFLLHYNFPPYCVGETGFVGSPKRREIGHGKL----AKRGIAAVMPSVDEFPYTVRVVSE 431
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ G +AL D ++ + V +G + +
Sbjct: 432 ITESNGSSSMASVCGTSLALMDAGVPIKSSVAGIAMGLVKEGDDFVVLSD---------I 482
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T +G I +Q + +++ LN A+ ++ + +
Sbjct: 483 LGDEDHLGDMDFKVAGTQTG-ITALQMDIKIEGITKEIMQIALNQAQGARKHILSVMDEA 541
Query: 238 IS 239
I+
Sbjct: 542 IA 543
Score = 89.5 bits (220), Expect = 3e-16, Method: Composition-based stats.
Identities = 37/234 (15%), Positives = 77/234 (32%), Gaps = 28/234 (11%)
Query: 14 ISLTRRV-SKYAEGSCLVKFGDTHLLTTATLEEKV----PMWIRNTKHGWITAEYGMLPR 68
++L V ++ A + +V DT + + +++ + + T G +P
Sbjct: 17 VTLETGVIARQASAAVMVTMDDTAVFVSVVGKKEAVAGQDFFPLTVNYQERTYAAGKIPG 76
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
R GR R+I R +R + S Q+I + D
Sbjct: 77 GFFKR------EGRPSEGETLTARLIDRPIRPLFPDSFKNEVQVIATVMSVNPDVQPDIV 130
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
+ G A G + + G + G +++ E +D
Sbjct: 131 TMIGTSAA-------------LAISGIPFNGPIGSARVGHIDGQLVLNPSNTELDASKLD 177
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNEV 242
T+S ++ V+ +E +++ A + D+ +IK + +EV
Sbjct: 178 LVVAGTES-AVLMVE--SEADNLTEEEMLAAVVYGHDQQQVVIKAINEF-KSEV 227
>gi|255658262|ref|ZP_05403671.1| polyribonucleotide nucleotidyltransferase [Mitsuokella multacida
DSM 20544]
gi|260849574|gb|EEX69581.1| polyribonucleotide nucleotidyltransferase [Mitsuokella multacida
DSM 20544]
Length = 689
Score = 150 bits (378), Expect = 2e-34, Method: Composition-based stats.
Identities = 47/242 (19%), Positives = 89/242 (36%), Gaps = 18/242 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56
+R GR+ ++R +S + GS L G T +LT T +E+V +
Sbjct: 310 IRPDGREVEEVRPVSCEVGLLPRTHGSGLFTRGQTQILTVTTLGSLGDEQVIDGLGPETT 369
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y S G + R+ G RAL V+ I +
Sbjct: 370 KHYIHHYNFPGYSVGEARPMRSPGRREIGHGAL----AERALVPVIPSIEEFPYTIRLVS 425
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V++++G + ++ G+ ++L + ++ + + V +G + D
Sbjct: 426 EVLESNGSSSMGSVCGSTLSLMNAGVPIKRPVSGVAMGLVKEGD---------QYTILTD 476
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED+ D+D T G I +Q + S++ A L AK A ++ +
Sbjct: 477 IQGMEDALGDMDFKVAGTTEG-ITAIQMDIKVDGLSREILSAALQQAKRGRAFILGKMLE 535
Query: 237 VI 238
I
Sbjct: 536 CI 537
Score = 106 bits (264), Expect = 3e-21, Method: Composition-based stats.
Identities = 41/229 (17%), Positives = 78/229 (34%), Gaps = 27/229 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKHGWITAEYGML 66
R + + ++K A G+ LV++GDT +L TAT E V + + G +
Sbjct: 11 RPLVIENGQLAKQANGAVLVRYGDTVVLVTATASAEPREGVDFFPLTVDYEEKMYAAGKI 70
Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
P R GR + R+I R +R + QI+ ++ D
Sbjct: 71 PGGFIKR------EGRPSSDAILCARLIDRPIRPLFPKGFRNDVQIVATVLSVEQDNAPE 124
Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
AA+ GA A G +A + G + +++ +
Sbjct: 125 LAAMIGASCA-------------LTVSDIPFMGPIAGVRVGRVNDEFVINPTEEQRKVST 171
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
++ ++ V+ A +D + + I L++ Q+
Sbjct: 172 LNLTVAG-SHDAVMMVEAGANE--LPEDVILDAILFGHEEIKRLVEFQQ 217
>gi|154174457|ref|YP_001407821.1| polynucleotide phosphorylase/polyadenylase [Campylobacter curvus
525.92]
gi|187470952|sp|A7GX79|PNP_CAMC5 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|112802675|gb|EAU00019.1| polyribonucleotide nucleotidyltransferase
(Polynucleotidephosphorylase) (PNPase) [Campylobacter
curvus 525.92]
Length = 735
Score = 150 bits (378), Expect = 2e-34, Method: Composition-based stats.
Identities = 47/243 (19%), Positives = 82/243 (33%), Gaps = 22/243 (9%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKH---- 56
+R GR +++R IS+ V A GSCL G T L ATL + +
Sbjct: 343 VRADGRALDEVRPISIETNVLPNAHGSCLFTRGQTQALVVATLGTDGDAQMYDILTEKTA 402
Query: 57 --GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIII 114
Y S G +A R+ G RAL + I +
Sbjct: 403 LIEKFMFNYNFPGFSVGEASPLKAPGRRELGHGNL----AKRALAPSI--DINSPYTIRL 456
Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPI 174
++++++G + A++ G +AL + + + +G A+ ++
Sbjct: 457 VSEILESNGSSSMASVCGGALALRAAGVDTQKLVAGVAMGLIFEGDKHAVLTDIM----- 511
Query: 175 VDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
ED D+D + G I +Q + S + L AK ++ L
Sbjct: 512 ----GLEDHDGDMDFKVAGSSDG-ITALQMDIKLGGISLEVLKEALYQAKRGREHILNLM 566
Query: 235 KDV 237
Sbjct: 567 HQA 569
Score = 74.1 bits (180), Expect = 1e-11, Method: Composition-based stats.
Identities = 32/255 (12%), Positives = 74/255 (29%), Gaps = 53/255 (20%)
Query: 20 VSKYAEGSCLVKFGDTHLLTTATLEE---KVPMWIRNTKHGWITAEYGMLPRSTGNRVKR 76
V+K A G+ +++ +T +L T ++ + ++ G +P R
Sbjct: 19 VAKQAAGAVMLRVKNTVVLATVARDDVQVEEDFLPLTVQYIEKAYAAGRIPGGYVKR--- 75
Query: 77 EAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVA 136
+ G R+I R+LR + QI++ + + + A VA
Sbjct: 76 ---ETKPGDFETLTARIIDRSLRPLFPKGYAYPTQIVVMVLSADPEVDLQVVGLNAASVA 132
Query: 137 LHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDS 196
L+ + V + G + +++ E + +D T
Sbjct: 133 LY-------------LSDIPVNRPVCGVRVGYIDDKFVINPSNSELKSSALDLYVAGTKD 179
Query: 197 GHIVEVQGSA------------------------------ERATFSQDHFFAMLNLAKDR 226
++ ++ + + FS+D ++ A
Sbjct: 180 -ELLMIEMRSIAQQSSQIIPIIAIDPMMDPSLNDSITQKQDMNEFSEDRIVEAIDFAGKA 238
Query: 227 IADLIKLQKDVISNE 241
I ++
Sbjct: 239 ILRASNAYEEAFKEH 253
>gi|224146058|ref|XP_002325864.1| predicted protein [Populus trichocarpa]
gi|222862739|gb|EEF00246.1| predicted protein [Populus trichocarpa]
Length = 730
Score = 150 bits (378), Expect = 2e-34, Method: Composition-based stats.
Identities = 46/241 (19%), Positives = 86/241 (35%), Gaps = 13/241 (5%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEK-----VPMWIRNTKH 56
R GR +++R I + A GS L G+T L TL +K V + +
Sbjct: 380 RSDGRTPDRIRPIDSRCGILPRAHGSALFTRGETQSLAVVTLGDKQMAQRVDNLVDEEEF 439
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
+Y P G + A S R+ G + RAL+ ++ + ++
Sbjct: 440 KRFYLQYLFPPSCVGEVGRIGAPSRREIGHGML----VERALKPILPSDDDFPYTVRVES 495
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+ +++G + A++ G +AL D ++ + VL G + D
Sbjct: 496 TITESNGSSSMASVCGGCLALQDAGVPVKCMIAGIAMGMVLDTEEFG---GDGTPLILSD 552
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED++ D+D + G I Q + + L A+D ++
Sbjct: 553 ITGSEDASGDMDFKVAGNEDG-ITAFQMDIKVGGITLPVMRKALLQARDGRQHILAEMLK 611
Query: 237 V 237
Sbjct: 612 C 612
Score = 81.8 bits (200), Expect = 7e-14, Method: Composition-based stats.
Identities = 34/223 (15%), Positives = 67/223 (30%), Gaps = 19/223 (8%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRST 70
R I + + + A GS V G+T + T+ L++ E T
Sbjct: 30 RHILVETGHIGRQASGSVTVTDGETIVYTSVCLDDVPSEPSDFYPLSVNYQERFSAAGRT 89
Query: 71 GNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAI 130
G+ I R+I R LR + QI+ + A+
Sbjct: 90 S--GGFFKREGKLKDHEVLICRLIDRPLRPTMFKGFYHETQILSWVLSYDGLHSPDSLAV 147
Query: 131 TGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDAN 190
T A +A+ +A + G++ IV+ E ++D
Sbjct: 148 TAAGIAV-------------ALSEVPNTKVIAGVRVGLVDNKFIVNPTTKEMEESELDLL 194
Query: 191 FVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
T I ++ +++ + + +D + +
Sbjct: 195 LAGT-DSAIFMIE--GYCNFLTEEKLLDAVQIGQDAVRAICNE 234
>gi|260889914|ref|ZP_05901177.1| tRNA nucleotidyltransferase [Leptotrichia hofstadii F0254]
gi|260860520|gb|EEX75020.1| tRNA nucleotidyltransferase [Leptotrichia hofstadii F0254]
Length = 239
Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats.
Identities = 109/233 (46%), Positives = 155/233 (66%), Gaps = 2/233 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+R + R+ ++MRE+ +T+ + EGS L++FG+T ++ AT+EEK+P W++ T GW+T
Sbjct: 9 VRKNNRKNDEMREVKVTKNYIIHPEGSVLMEFGNTKVICNATVEEKIPRWLKGTGSGWVT 68
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEY MLPR+T RV+RE+ G+ GR+ EIQR+IGRALR+ +DL LG R I+IDCDVIQ
Sbjct: 69 AEYSMLPRATNARVQRESTKGKLSGRTMEIQRLIGRALRAAIDLEKLGERTIMIDCDVIQ 128
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+ITGA++AL ++ + D +K VAAIS G + ++DL+Y
Sbjct: 129 ADGGTRTASITGAYLALELAIEKLIDE--GKLKDIPIKSKVAAISVGKVRNELLLDLEYE 186
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
EDS DVD N VM D G +E+QG+ E ATF+ + L+K+ L L
Sbjct: 187 EDSRADVDMNIVMNDKGEFIELQGTGEEATFTHAELLKFIELSKNAFDKLFSL 239
>gi|315179225|gb|ADT86139.1| polyribonucleotide nucleotidyltransferase [Vibrio furnissii NCTC
11218]
Length = 711
Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats.
Identities = 42/242 (17%), Positives = 91/242 (37%), Gaps = 18/242 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR+++ +R + + V GS L G+T L TATL + ++ + +
Sbjct: 316 RIDGREKDMVRALDVRTGVLPRTHGSALFTRGETQALVTATLGTQRDAQIIDELTGERKD 375
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P G + R+ G + R + +V+ + + +
Sbjct: 376 HFLLHYNFPPYCVGETGFVGSPKRREIGHGRL----AKRGIAAVMPSIDEFPYTVRVVSE 431
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ G+ +AL D ++ + V + + + +
Sbjct: 432 ITESNGSSSMASVCGSSLALMDAGVPIKASVAGIAMGLVKEENDFVVLSD---------I 482
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T +G + +Q + +++ LN AK ++ +
Sbjct: 483 LGDEDHLGDMDFKVAGTSNG-VTALQMDIKIEGITKEIMQIALNQAKGARLHILSVMDQA 541
Query: 238 IS 239
IS
Sbjct: 542 IS 543
Score = 92.2 bits (227), Expect = 5e-17, Method: Composition-based stats.
Identities = 38/228 (16%), Positives = 75/228 (32%), Gaps = 27/228 (11%)
Query: 14 ISLTRRV-SKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKHGWITAEYGMLPR 68
++L V ++ A + +V DT + + + E + + T G +P
Sbjct: 17 VTLETGVMARQATAAVMVTMDDTAVFVSVVGKKEAVEGQDFFPLTVNYQERTYAAGKIPG 76
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
R GR R+I R +R + + Q+I + D
Sbjct: 77 GFFKR------EGRPSEGETLTARLIDRPIRPLFPDAFKNEVQVIATVVSVNPDVQPDIV 130
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
+ G A G + A G + G +++ E +T +D
Sbjct: 131 TMIGTSAA-------------LAISGIPFNGPIGAARVGHIDGQLVLNPSNTELATSKLD 177
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
T+S ++ V+ AE S++ + + D+ +IK +
Sbjct: 178 LVVAGTES-AVLMVESEAE--VLSEEEMLSAVVFGHDQQQTVIKAINE 222
>gi|317153855|ref|YP_004121903.1| polyribonucleotide nucleotidyltransferase [Desulfovibrio
aespoeensis Aspo-2]
gi|316944106|gb|ADU63157.1| polyribonucleotide nucleotidyltransferase [Desulfovibrio
aespoeensis Aspo-2]
Length = 754
Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats.
Identities = 48/244 (19%), Positives = 89/244 (36%), Gaps = 18/244 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
+R+ GR +R +S+ V GSCL + G+T L ATL +E+ +
Sbjct: 319 LRIDGRDTTTVRALSIETGVLPMTHGSCLFRRGETSALAVATLGSTRDEQRYDSLLGDAT 378
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P G S R+ G RA+ V+ I +
Sbjct: 379 KRFMLHYNFPPYCVGEARMLRGTSRREVGHGAL----AERAIAPVLPNQDEFPFTIRVVS 434
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
++++++G + A++ GA ++L D + + + + + D
Sbjct: 435 EIMESNGSSSMASVCGATLSLMDAGVPISAPVAGIAMGLCKENE---------QFFVLTD 485
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED+ D+D T G I +Q + + D L AKD ++ +
Sbjct: 486 ILGDEDALGDMDFKVAGTRDG-ITSIQMDIKISGIPSDVLRKALYQAKDARVHILDHMAE 544
Query: 237 VISN 240
V++
Sbjct: 545 VLAE 548
Score = 91.8 bits (226), Expect = 7e-17, Method: Composition-based stats.
Identities = 42/228 (18%), Positives = 73/228 (32%), Gaps = 25/228 (10%)
Query: 13 EISLTRR-VSKYAEGSCLVKFGDTHLLTT-ATLEEKVPM--WIRNTKHGWITAEYGMLPR 68
+I++ ++ A G+ +K G T +L T T +V + + + G +P
Sbjct: 18 DITIESGKYARQASGAVTIKSGGTVILVTSTTQPIEVDRGFFPLTCNYQEMAYAAGRVPG 77
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
+ R GR R I R+I R +R + QII
Sbjct: 78 NYFRR------EGRPSERETLISRLIDRPIRPLFAKGFADEVQIIATVLSADKHVNPDVL 131
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+TGA A H G + G + ++ Y +
Sbjct: 132 ALTGASAATH-------------ISKMPFLGPIVGARVGYVDNQFVLFPSYKGMEELSSL 178
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+V V+G A S+D L +++ L +Q +
Sbjct: 179 NLIFAATREAMVMVEGGA--NFVSEDLVADALAWGHEQVKPLFDIQDE 224
>gi|295132795|ref|YP_003583471.1| polynucleotide phosphorylase/polyadenylase [Zunongwangia profunda
SM-A87]
gi|294980810|gb|ADF51275.1| polynucleotide phosphorylase/polyadenylase [Zunongwangia profunda
SM-A87]
Length = 731
Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats.
Identities = 48/244 (19%), Positives = 83/244 (34%), Gaps = 20/244 (8%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
+RL GR+ ++R I GS + G+T L T TL E
Sbjct: 317 IRLDGRKTTEIRPIWCEVDYLPSPHGSSIFTRGETQALATVTLGTSREANQVDLPTQQGE 376
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P STG S R+ G RAL+ ++ + +
Sbjct: 377 ENFYLHYNFPPFSTGEAYPIRGTSRREIGHGNL----AQRALKGMIPSD--CPYTVRVVS 430
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V++++G + A + +AL D ++ + + + G A+
Sbjct: 431 EVLESNGSSSMATVCAGTMALMDAGIQLKKPVSGIAMGLISDGEDFAVLSD--------- 481
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T G I Q + S + L A+D +++ D
Sbjct: 482 ILGDEDHLGDMDFKVTGTADG-ITACQMDIKIKGLSYEILVKALKQARDGRLHILEKLTD 540
Query: 237 VISN 240
I+
Sbjct: 541 TIAE 544
Score = 111 bits (278), Expect = 6e-23, Method: Composition-based stats.
Identities = 35/232 (15%), Positives = 72/232 (31%), Gaps = 26/232 (11%)
Query: 7 QENQMREISLTRR-VSKYAEGSCLVKFGDTHLLTTA---TLEEKVPMWIRNTKHGWITAE 62
REIS+ ++K A GS +V+ GD LL T + + + A
Sbjct: 11 DLGDGREISIETGKLAKQAHGSVVVRMGDAMLLCTVVSSYTPTTMDFFPLTLDYREKFAA 70
Query: 63 YGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQAD 122
G P R R + R++ R LR + Q++I +
Sbjct: 71 AGRFPGGYFKR------EARPSSEEILVMRLVDRVLRPLFPKDYKFETQVMIQLMSHDPE 124
Query: 123 GGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGED 182
L + + + ++ + + G +++ + +
Sbjct: 125 VMPDA-------------LAGLAASAAIQVSDIPFETPISEVRVARIDGELVINPSFEQL 171
Query: 183 STIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
D+D + ++ V+ E S++ + A + I + Q
Sbjct: 172 EKADLDMMV-GASADSVMMVE--GEMDEISEEEMAEAIKFAHEAIKVQCEAQ 220
>gi|126663253|ref|ZP_01734251.1| putative polyribonucleotide nucleotidyltransferase [Flavobacteria
bacterium BAL38]
gi|126624911|gb|EAZ95601.1| putative polyribonucleotide nucleotidyltransferase [Flavobacteria
bacterium BAL38]
Length = 719
Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats.
Identities = 50/243 (20%), Positives = 81/243 (33%), Gaps = 20/243 (8%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
RL GR+ ++R I GS L G+T L TATL E
Sbjct: 319 RLDGRKTTEIRPIWCEVDYLPSVHGSALFTRGETQALATATLGTSREANQIDSPSEQGEE 378
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P STG S R+ G RAL++++ I I +
Sbjct: 379 KFYLHYNFPPFSTGEARPLRGTSRREVGHGNL----AQRALKNMIPAE--NPYTIRIVSE 432
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
V++++G + A + +AL D M + + + G A+ +
Sbjct: 433 VLESNGSSSMATVCAGTLALMDAGVQMIRPVSGIAMGLITDGERFAVLSD---------I 483
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T G I Q + + L A+D ++ +
Sbjct: 484 LGDEDHLGDMDFKVTGTSEG-ITACQMDIKIDGLKYEIMEQALAQARDGRLHILGKLTET 542
Query: 238 ISN 240
++
Sbjct: 543 LAK 545
Score = 101 bits (251), Expect = 8e-20, Method: Composition-based stats.
Identities = 39/234 (16%), Positives = 69/234 (29%), Gaps = 27/234 (11%)
Query: 7 QENQMREISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRN----TKHGWITA 61
R I++ ++K A+GS +V+ G T +L T K I + A
Sbjct: 11 DLGDGRSITIETGRLAKQADGSVVVRIGKTVILGTVVSARKASPGIDFLPLTVDYREKFA 70
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
G P R R R++ R LR + Q++I
Sbjct: 71 AAGRFPGGFFKR------EARPSDSEVLTMRLVDRVLRPLFPSDYHAEVQVMIQLMSHDE 124
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
D L + + + ++ G + G I++ +
Sbjct: 125 DVMPDA-------------LAGLAASAALALSDIPFETLISEARVGRIDGKFIINPSRAQ 171
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
D+D + I V+ E S+ + A + I I Q+
Sbjct: 172 LELSDIDMMI-GASTDSIAMVE--GEMKEISEAEMLEAIKFAHEHIKVQIAAQE 222
>gi|190571231|ref|YP_001975589.1| polyribonucleotide nucleotidyltransferase [Wolbachia endosymbiont
of Culex quinquefasciatus Pel]
gi|226704831|sp|B3CM21|PNP_WOLPP RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|190357503|emb|CAQ54939.1| polyribonucleotide nucleotidyltransferase [Wolbachia endosymbiont
of Culex quinquefasciatus Pel]
Length = 758
Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats.
Identities = 45/245 (18%), Positives = 87/245 (35%), Gaps = 18/245 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTT----ATLEEKVPMWIRNTKH 56
+R+ R+ +++R+I + + GS L G T L T +E++ I +
Sbjct: 310 VRIDSRKYDEIRQIEIEADILPKTHGSALFTRGSTQALVVTALGTTQDEQIVDDIEGDRR 369
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P + G A R+ G + +A+ V+ + I +
Sbjct: 370 EHFMLHYNFPPFAVGEASAIRAPGRREIGHGKL----AWKAIHPVLPDKSEFPYTIRVVS 425
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+++++DG + A + G +AL D ++ + + + D
Sbjct: 426 EIMESDGSSSMATVCGTSIALMDTGVPIKAPVAGIAMGLIKD---------KNEHIILSD 476
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T G I +Q + S + L AK +++
Sbjct: 477 ILGDEDYLGDMDFKVAGTSEG-ITALQMDMKIPGISFEIVEKSLEQAKVGRLHILEKMNA 535
Query: 237 VISNE 241
VIS
Sbjct: 536 VISEH 540
Score = 103 bits (256), Expect = 2e-20, Method: Composition-based stats.
Identities = 43/231 (18%), Positives = 81/231 (35%), Gaps = 25/231 (10%)
Query: 10 QMREISLTRR-VSKYAEGSCLVKFGDTHLLTTAT---LEEKVPMWIRNTKHGWITAEYGM 65
+ R +SL +++ A+GS +V +GDT +L T EE V N + + G
Sbjct: 12 EGRTLSLETGKIARQADGSVVVNYGDTSILVTVVRKKKEESVDFLPLNVQFIAKSYAMGK 71
Query: 66 LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125
+P R G+ R I R+I R++R + ++ +
Sbjct: 72 IPGGFFKR------EGKPSDRETLISRVIDRSIRPLFPEGFHDEISVVCNLLTYDTVNSP 125
Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185
A+ G AL + I++ E
Sbjct: 126 EVPALIGTVAALAISGVPFHFTIAGV------------MVGCDENNNYILNPSVQEMKAS 173
Query: 186 DVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
++D F+ D I+ V+ +E S+++ + + + +IKL K+
Sbjct: 174 NLDL-FLSGDENSILMVE--SEVKELSEENVLNAIKFGHEHLQPVIKLIKE 221
>gi|90581545|ref|ZP_01237338.1| polyribonucleotide nucleotidyltransferase [Vibrio angustum S14]
gi|90437307|gb|EAS62505.1| polyribonucleotide nucleotidyltransferase [Vibrio angustum S14]
Length = 708
Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats.
Identities = 44/242 (18%), Positives = 90/242 (37%), Gaps = 18/242 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR+++ +R + + V GS L G+T L TATL + ++ +
Sbjct: 314 RIDGREKDMVRALDVRTGVLPRTHGSSLFTRGETQALVTATLGTQRDAQIIDGLTGETKD 373
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P G + R+ G + R + +V+ + + +
Sbjct: 374 HFLLHYNFPPYCVGETGFVGSPKRREIGHGKL----AKRGIAAVMPSVDEFPYTVRVVSE 429
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ G +AL D ++ + V +G + +
Sbjct: 430 ITESNGSSSMASVCGTSLALMDAGVPIKASVAGIAMGLVKEGDDFVVLSD---------I 480
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D TD G I +Q + +++ LN AK ++ + +
Sbjct: 481 LGDEDHLGDMDFKVAGTDDG-ITALQMDIKIEGITKEIMQIALNQAKGARKHILSVMDNA 539
Query: 238 IS 239
I+
Sbjct: 540 IN 541
Score = 90.3 bits (222), Expect = 2e-16, Method: Composition-based stats.
Identities = 32/228 (14%), Positives = 65/228 (28%), Gaps = 27/228 (11%)
Query: 14 ISLTRRV-SKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKHGWITAEYGMLPR 68
++L V ++ A + +V DT + + + E + + T G +P
Sbjct: 15 VTLETGVMARQATAAVMVSMDDTSVFVSVVGKKTAVEGQDFFPLTVNYQERTYAAGKIPG 74
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
R GR R+I R +R + Q+I +
Sbjct: 75 GFFKR------EGRPSEGETLTARLIDRPIRPLFPDDFKNEVQVIATVVSVNPAVSPDIV 128
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
+ G A G + A G + +++ E +D
Sbjct: 129 TMIGTSAA-------------LAISGIPFNGPIGAARVGYINDQFVLNPSNVELEESRLD 175
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
T ++ V+ +E S++ + D+ I +
Sbjct: 176 LVVAGTKD-AVLMVE--SEADRLSEEQMLQAVVFGHDQQQVAINAINE 220
>gi|257094905|ref|YP_003168546.1| polynucleotide phosphorylase/polyadenylase [Candidatus
Accumulibacter phosphatis clade IIA str. UW-1]
gi|257047429|gb|ACV36617.1| Polyribonucleotide nucleotidyltransferase [Candidatus
Accumulibacter phosphatis clade IIA str. UW-1]
Length = 706
Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats.
Identities = 48/244 (19%), Positives = 96/244 (39%), Gaps = 18/244 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +R I++ V A GS L G+T + ATL +E++ +
Sbjct: 315 RIDGRDTRTVRPIAIRSGVLPRAHGSSLFTRGETQAIVVATLGTGRDEQIIDALSGEYRE 374
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P +TG + R+ G + RAL +V+ S I + +
Sbjct: 375 RFMLHYNFPPYATGECGRVGTPKRREVGHGRL----AKRALLAVLPAPEDFSYTIRVVSE 430
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ GA +AL D ++ + + +G+ A+ +
Sbjct: 431 ITESNGSSSMASVCGASLALMDAGVPLKAHVAGIAMGLIKEGNRVAVLTD---------I 481
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T++G + +Q + +++ L A + ++K +
Sbjct: 482 LGDEDHLGDMDFKVAGTEAG-VTALQMDIKIQGITKEIMQVALAQAGEARLHILKQMQGS 540
Query: 238 ISNE 241
+S
Sbjct: 541 MSGH 544
Score = 101 bits (250), Expect = 1e-19, Method: Composition-based stats.
Identities = 35/233 (15%), Positives = 79/233 (33%), Gaps = 28/233 (12%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT----KHGWITAEYGMLPR 68
+++ +++ A G+ +V DT +L + + + T G +P
Sbjct: 16 VTMETGEIARQAGGAVMVSIDDTVVLVSVVGNKTAKPGQDFFPLTVDYIEKTYAAGKIPG 75
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
R GR + R+I R LR + Q++ + + A
Sbjct: 76 GFFKR------EGRPSEKETLTSRLIDRPLRPLFPDGFYHEVQVVATVMSLNPEIDPDIA 129
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+ GA A+ G + A G + G +V+ + + +D
Sbjct: 130 ALIGASAAM-------------TISGIPFDGPIGAARVGYVDGQYVVNPTATQLKSSLLD 176
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
T + ++ V+ A+ S++ + ++ +I + +++E
Sbjct: 177 LVVAGTQA-AVLMVESEAKE--LSEEVMLGAVVFGHQQMQVVIDAINE-LADE 225
>gi|23099059|ref|NP_692525.1| polynucleotide phosphorylase/polyadenylase [Oceanobacillus
iheyensis HTE831]
gi|81746388|sp|Q8EQT7|PNP_OCEIH RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|22777287|dbj|BAC13560.1| polyribonucleotide nucleotidyltransferase alpha chain
[Oceanobacillus iheyensis HTE831]
Length = 705
Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats.
Identities = 46/244 (18%), Positives = 85/244 (34%), Gaps = 18/244 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56
+R GR+ +++R +S V GS L G T L+ T + ++ + +
Sbjct: 315 IRPDGRKVDEIRPLSSRIHVLPRTHGSGLFTRGQTQALSVCTLGALGDVQILDGLDLEES 374
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y S G R+ G RAL V+ I +
Sbjct: 375 KRFMHHYNFPQYSVGETGPIRGPGRREIGHGALG----ERALEKVIPDDKEFPYTIRLVS 430
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V++++G T A+I + +A+ D ++ + V G + D
Sbjct: 431 EVLESNGSTSQASICASTLAMMDAGVPIKAPVAGIAMGLVKSGDD---------YTILTD 481
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED+ D+D T +G + +Q + S+D L+ AK ++
Sbjct: 482 IQGMEDALGDMDFKVAGTANG-VTALQMDIKIDGLSRDILEEALSQAKKGRMQILDSMLA 540
Query: 237 VISN 240
I
Sbjct: 541 TIKE 544
Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats.
Identities = 40/231 (17%), Positives = 88/231 (38%), Gaps = 26/231 (11%)
Query: 13 EISLTRR-VSKYAEGSCLVKFGDTHLLTTATL---EEKVPMWIRNTKHGWITAEYGMLPR 68
+ ++ ++K A G+C++ +GDT +L+ AT + +P + + G +P
Sbjct: 16 KFTVEVGELAKQANGACMIHYGDTSVLSVATASSEPKDLPFFPLTVNYEERLYAVGKIPG 75
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
R GR ++ R+I R +R + Q+I + D + A
Sbjct: 76 GFIKR------EGRPSEKAILSSRLIDRPIRPLFPDGFRNEVQVISTVMSVDQDCPSEIA 129
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+ G+ +A + +A ++ G + G I++ +++ D++
Sbjct: 130 AMIGSSIA-------------LSVSDIPFEQPIAGVNVGRVDGEFIINPTIEQEAKSDIE 176
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
T I V+ A +D + + I L+ Q++++
Sbjct: 177 LTVAGTKD-AINMVEAGANEVP--EDIMLEAIMFGHEEIKRLVAFQEELVK 224
>gi|315149071|gb|EFT93087.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis
TX0012]
Length = 704
Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats.
Identities = 45/243 (18%), Positives = 86/243 (35%), Gaps = 18/243 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56
+R GR+ +++R +S + GS L G T L+ T E +V +
Sbjct: 318 IRPDGRKLDEIRHLSSEVSILPRVHGSGLFTRGQTQALSVCTLAPLGEHQVIDGLGVQDS 377
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y S G+ + + R+ G RAL ++ I +
Sbjct: 378 KRFIHHYNFPQFSVGSTGRAGSPGRREIGHGALG----ERALAQIIPSEEDFPYTIRLVA 433
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V++++G + A+I +AL D ++ + V G + D
Sbjct: 434 EVLESNGSSSQASICAGTLALMDAGVPIKAPVAGIAMGLVSDGE---------NYTILTD 484
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T G I +Q + ++ L+ AK ++++
Sbjct: 485 IQGLEDHLGDMDFKVAGTKDG-ITALQMDIKIQGITEQILTEALDQAKKARMEILEELTT 543
Query: 237 VIS 239
I+
Sbjct: 544 TIA 546
Score = 116 bits (291), Expect = 2e-24, Method: Composition-based stats.
Identities = 44/232 (18%), Positives = 86/232 (37%), Gaps = 26/232 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEK---VPMWIRNTKHGWITAEYGMLP 67
R + + ++K A G+ LV++GDT +L+ A ++ V + + G +P
Sbjct: 14 RPLEVEIGQLAKQANGAVLVRYGDTVVLSAAVASKEAKDVDFFPLTVNYEEKMYAVGKIP 73
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R GR R+ R+I R +R + QI + D
Sbjct: 74 GGFIKR------EGRPSERATLTARLIDRPIRPMFSEGFRNEVQITNIVMSVDQDCTPEM 127
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
AA+ G+ +A G +A + G + G +++ + D+
Sbjct: 128 AAMFGSSLA-------------LAISDIPFDGPIAGVDVGRIDGEYVLNPTVEQAEQTDI 174
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
+ T I V+ A+ S++ L D I +L+ Q+++++
Sbjct: 175 ELTVAGTKE-AINMVESGAKE--VSEEDMLGALLFGFDAIKELVAFQEEIVA 223
>gi|70726640|ref|YP_253554.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus
haemolyticus JCSC1435]
gi|117940134|sp|Q4L5X7|PNP_STAHJ RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|68447364|dbj|BAE04948.1| polyribonucleotide nucleotidyltransferase [Staphylococcus
haemolyticus JCSC1435]
Length = 700
Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats.
Identities = 43/244 (17%), Positives = 87/244 (35%), Gaps = 18/244 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56
+R GR+ +++R + + A GS L G T L+ T + ++ + +
Sbjct: 318 IRPDGRKPDEIRPLESEVGLLPRAHGSGLFTRGQTQALSVLTLGALGDYQLIDGLGPEQE 377
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y S G A R+ G RAL+ ++ + + I
Sbjct: 378 KRFMHHYNFPNFSVGETGPVRAPGRREIGHGALG----ERALKYIIPDTTEFPYTVRIVS 433
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V++++G + A+I G+ +AL D ++ + V + + D
Sbjct: 434 EVLESNGSSSQASICGSTLALMDAGVPIKAPVAGIAMGLVTRED---------SYTILTD 484
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED+ D+D T G I +Q + +++ L A+ ++
Sbjct: 485 IQGMEDALGDMDFKVAGTKEG-ITAIQMDIKIDGLTREVIEEALEQARQGRLAIMDHMLQ 543
Query: 237 VISN 240
I
Sbjct: 544 TIDQ 547
Score = 111 bits (276), Expect = 1e-22, Method: Composition-based stats.
Identities = 42/232 (18%), Positives = 84/232 (36%), Gaps = 26/232 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKV---PMWIRNTKHGWITAEYGMLP 67
R +++ ++K A G+ LV++GDT +L+TA ++ + + G +P
Sbjct: 15 RSLTIEIGQLAKQANGAVLVRYGDTVVLSTAVASKEPRDGDFFPLTVNYEEKMYAAGKIP 74
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R GR G + R+I R +R + QI+ D
Sbjct: 75 GGFKKR------EGRPGDEATLTARLIDRPIRPLFPKGYRHDVQIMNTVLSADPDCSPEM 128
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
AA+ G+ +A +G +A ++ G + G +++ E +
Sbjct: 129 AAMIGSSMA-------------LSVSDIPFQGPIAGVNVGYVDGKYVINPTVEEKEVSRL 175
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
D + V+ A ++ + D I L+ Q++V++
Sbjct: 176 DLEVAGHKD-AVNMVEAGASE--ITEKEMLEAIFFGHDEIKRLVAFQEEVVA 224
>gi|255034850|ref|YP_003085471.1| polynucleotide phosphorylase/polyadenylase [Dyadobacter fermentans
DSM 18053]
gi|254947606|gb|ACT92306.1| Polyribonucleotide nucleotidyltransferase [Dyadobacter fermentans
DSM 18053]
Length = 713
Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats.
Identities = 51/243 (20%), Positives = 83/243 (34%), Gaps = 16/243 (6%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
RL GR +Q+R I+ A GS L G+T LTT TL +E++ +
Sbjct: 321 RLDGRALDQVRPIASEVDFLPNAHGSALFTRGETQSLTTVTLGTKQDEQIVDTPLKYGYS 380
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y STG R+ G RAL+ V+ I I D
Sbjct: 381 KFMLHYNFPGFSTGEVKPNRGPGRREVGHGNL----ALRALKKVLPAEGDNPYTIRIVSD 436
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+++++G + A + +AL D ++ + + + + D+
Sbjct: 437 ILESNGSSSMATVCAGSLALMDSGLKIKAPVSGIAMGLISD-------EATGKYAVLSDI 489
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T G I Q + S + L AK ++
Sbjct: 490 LGDEDHLGDMDFKVTGTAEG-ITACQMDMKVNGLSFEVLTEALMQAKAGRLHILGEMNKT 548
Query: 238 ISN 240
I+
Sbjct: 549 ITE 551
Score = 83.7 bits (205), Expect = 2e-14, Method: Composition-based stats.
Identities = 42/239 (17%), Positives = 77/239 (32%), Gaps = 33/239 (13%)
Query: 3 LSGRQENQMREISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRN----TKHG 57
GR EI++ ++K A+GS +V+ G+T LL T + + + +
Sbjct: 13 PDGR------EITIETGKLAKQADGSVVVRLGNTMLLATVVANKDIKEGLDFLPLSVDYQ 66
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
A G +P S R G+ R++ R LR + Q
Sbjct: 67 EKFASAGRIPGSFQRR------EGKLSDHEVLTSRLVDRVLRPLFPDDYHAEVQ------ 114
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
I+ AL D L + + G V+ + + G +++
Sbjct: 115 -------VNILLISADAEALPDALAALAASAALAASDIPFGGPVSEVRVAKIDGEYVINP 167
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ +D T + I V+G + + L +A + I K+
Sbjct: 168 GTTALANATLDLMVGATYND-IAMVEGEMSEVSEEEV--IEALKIAHEAIKTQCLALKE 223
>gi|332518964|ref|ZP_08395431.1| polyribonucleotide nucleotidyltransferase [Lacinutrix algicola
5H-3-7-4]
gi|332044812|gb|EGI81005.1| polyribonucleotide nucleotidyltransferase [Lacinutrix algicola
5H-3-7-4]
Length = 750
Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats.
Identities = 45/243 (18%), Positives = 81/243 (33%), Gaps = 18/243 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
+RL GR+ +++R I GS + G+T L T TL E
Sbjct: 317 LRLDGRKTDEIRPIWCEVDYLPSTHGSSVFTRGETQALATVTLGTSREANQIDMPSYEGE 376
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P STG S R+ G RAL+ +V + +
Sbjct: 377 ERFYLHYNFPPFSTGEARPIRGTSRREVGHGNL----AQRALKGMVP--EDCPYTVRVVS 430
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
++++++G + A + +A+ D ++ + + + + D
Sbjct: 431 EILESNGSSSMATVCAGTMAMMDAGVQLKKPVSGIAMGLISDADSG-------KYAVLSD 483
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T G I Q + S + L A+D ++ +
Sbjct: 484 ILGDEDHLGDMDFKVTGTADG-ITACQMDIKVKGLSYEILVNALKQARDGRLHILDKITE 542
Query: 237 VIS 239
I
Sbjct: 543 TIE 545
Score = 103 bits (257), Expect = 2e-20, Method: Composition-based stats.
Identities = 37/232 (15%), Positives = 68/232 (29%), Gaps = 26/232 (11%)
Query: 7 QENQMREISLTRR-VSKYAEGSCLVKFGDTHLLTTA---TLEEKVPMWIRNTKHGWITAE 62
REIS+ ++K A GS +V+ G LL T + V + A
Sbjct: 11 DLGDGREISIETGKLAKQAHGSVVVQSGKCMLLCTVVSNYKQADVDFLPLTVDYREKFAA 70
Query: 63 YGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQAD 122
G P R R R++ R LR + Q++I D
Sbjct: 71 AGRYPGGFFKR------EARPSDGEVLTMRLVDRVLRPLFPKDYHSETQVMIQLMSHDDD 124
Query: 123 GGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGED 182
+ + + + ++ G + G I++ +
Sbjct: 125 VMPDA-------------MAGLAASAAIQLSDFPFECPISEARVGRVNGEFIINPTRAQL 171
Query: 183 STIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
D+D + ++ V+ E S++ + A + I Q
Sbjct: 172 EESDIDMMI-GASADSVMMVE--GEMDEISEEEMTEAIKFAHEAIKVQCAAQ 220
>gi|108763580|ref|YP_630302.1| polynucleotide phosphorylase/polyadenylase [Myxococcus xanthus DK
1622]
gi|123374693|sp|Q1DAM1|PNP_MYXXD RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|108467460|gb|ABF92645.1| polyribonucleotide nucleotidyltransferase [Myxococcus xanthus DK
1622]
Length = 722
Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats.
Identities = 45/243 (18%), Positives = 83/243 (34%), Gaps = 18/243 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ R + +R I+ V GS + G+T L TL +E+ +
Sbjct: 315 RIGDRGHDVVRSITCEVGVLPRTHGSAVFTRGETQALVVTTLGTSDDEQRLEMLGGMAFK 374
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S R+ G RALR++V S + + D
Sbjct: 375 RFMLHYNFPPFSVNETKPLRGPGRREVGHGAL----AERALRNMVPKSESFPYTVRLVSD 430
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+++++G + A++ G +AL D ++ + V +G AI +
Sbjct: 431 ILESNGSSSMASVCGGTLALMDAGVPLKAPVAGIAMGLVKEGDKIAILSD---------I 481
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T G I +Q + + + L A+ ++
Sbjct: 482 LGDEDHLGDMDFKVCGTSKG-ITSIQMDIKITGLTTEIMSRALEQARQGRLHILGEMLKT 540
Query: 238 ISN 240
++
Sbjct: 541 LAE 543
Score = 94.9 bits (234), Expect = 8e-18, Method: Composition-based stats.
Identities = 51/234 (21%), Positives = 84/234 (35%), Gaps = 27/234 (11%)
Query: 13 EISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEK---VPMWIRNTKHGWITAEYGMLPR 68
E+S+ ++K A+GS +V++GDT LL TA + + ++ G +P
Sbjct: 12 ELSIEVGRLAKQADGSVVVRYGDTMLLVTAVSAREKKDIDFLPLTVEYQEKLYSAGRIPG 71
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
S R GR + R++ R+ R + QII +
Sbjct: 72 SYFKR------EGRLTEKETLASRLVDRSCRPLFPEGYAYETQIIASVISSDPENEGDIH 125
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
ITGA AL G +A I G + G + + + D+D
Sbjct: 126 GITGASAALW-------------VSDIPFDGPIAGIRVGRVGGQLVANPTAKQREQSDLD 172
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNEV 242
+ IV V+G AE S+ A L+ + LQ + + E+
Sbjct: 173 L-VMAVSRKAIVMVEGGAEE--VSEADMVAALDFGFTTAQPALDLQDE-LRREL 222
>gi|327482021|gb|AEA85331.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas stutzeri
DSM 4166]
Length = 701
Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats.
Identities = 46/243 (18%), Positives = 91/243 (37%), Gaps = 18/243 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +R +++ V GS L G+T L ATL + ++ + K
Sbjct: 316 RIDGRDTRTVRPLAIEVGVLDKTHGSALFTRGETQALVVATLGTARDAQLLDTLEGEKKD 375
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + A R+ G + R + +++ + I + +
Sbjct: 376 AFMLHYNFPPYSVGECGRMGATGRREIGHGRL----ARRGVAAMLPSADEFPYTIRVVSE 431
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ GA +AL D M+ + V +G A+ +
Sbjct: 432 ITESNGSSSMASVCGASLALMDAGVPMKAPVAGIAMGLVKEGEKFAVLTD---------I 482
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T G + +Q + +++ L A + +++ V
Sbjct: 483 LGDEDHLGDMDFKVAGTAKG-VTALQMDIKIQGITEEIMEIALGQALEARLNILGQMNQV 541
Query: 238 ISN 240
I+
Sbjct: 542 IAQ 544
Score = 98.8 bits (244), Expect = 5e-19, Method: Composition-based stats.
Identities = 35/234 (14%), Positives = 72/234 (30%), Gaps = 29/234 (12%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTH-LLTTATLEEKVPM----WIRNTKHGWITAEYGMLP 67
++L +++ A G+ LV D +L T + + + + T G +P
Sbjct: 15 VTLETGRIARQASGAVLVTVDDDVSVLVTVVGAKSADPSKGFFPLSVHYQEKTYAAGKIP 74
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R R + R+I R +R + Q+I
Sbjct: 75 GGFFKR------EARPSEKETLTSRLIDRPIRPLFPEGFQNEVQVICTVVSTSKKTDPDI 128
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY-PIVDLDYGEDSTID 186
AA+ G A G + A +++ +Y +
Sbjct: 129 AAMIGTSAA-------------LAISGIPFDGPIGAARVAFHPETGYLLNPNYEQLKASS 175
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
+D T ++ V+ A+ ++D + A D +IK +++ +
Sbjct: 176 LDMVVAGTKD-AVLMVESEAKE--LTEDQMLGAVLFAHDEFQAVIKAVEELAAE 226
>gi|330447373|ref|ZP_08311022.1| polyribonucleotide nucleotidyltransferase [Photobacterium
leiognathi subsp. mandapamensis svers.1.1.]
gi|328491564|dbj|GAA05519.1| polyribonucleotide nucleotidyltransferase [Photobacterium
leiognathi subsp. mandapamensis svers.1.1.]
Length = 708
Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats.
Identities = 44/242 (18%), Positives = 92/242 (38%), Gaps = 18/242 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR+++ +R + + V GS L G+T L TATL + ++ + K
Sbjct: 314 RIDGREKDMVRALDVRTGVLPRTHGSSLFTRGETQALVTATLGTQRDAQIIDELTGEKKD 373
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
+ Y P G + R+ G + R + +V+ + + +
Sbjct: 374 YFLLHYNFPPYCVGETGFVGSPKRREIGHGKL----AKRGIAAVMPSIDEFPYTVRVVSE 429
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ G +AL D ++ + V +G + +
Sbjct: 430 ITESNGSSSMASVCGTSLALMDAGVPIKASVAGIAMGLVKEGDDFVVLSD---------I 480
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T+ G I +Q + +++ LN AK ++ + +
Sbjct: 481 LGDEDHLGDMDFKVAGTEDG-ITALQMDIKIEGITKEIMQIALNQAKGARKHILSVMDNA 539
Query: 238 IS 239
I+
Sbjct: 540 IN 541
Score = 92.2 bits (227), Expect = 5e-17, Method: Composition-based stats.
Identities = 32/228 (14%), Positives = 69/228 (30%), Gaps = 27/228 (11%)
Query: 14 ISLTRRV-SKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKHGWITAEYGMLPR 68
++L V ++ A + +V DT + + + E + + T G +P
Sbjct: 15 VTLETGVMARQATAAVMVSMDDTSVFVSVVGKKTAVEGQDFFPLTVNYQERTYAAGKIPG 74
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
R GR R+I R +R + Q+I +
Sbjct: 75 GFFKR------EGRPSEGETLTARLIDRPIRPLFPDDFKNEVQVIATVVSVNPAVSPDIV 128
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
+ G A G + A G + +++ E +D
Sbjct: 129 TMIGTSAA-------------LAISGIPFNGPIGAARVGYINDQFVLNPSNVELEESRLD 175
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
T++ ++ V+ +E +++ + D+ +IK +
Sbjct: 176 LVVAGTEA-AVLMVE--SEADRLTEEQMLQAVVFGHDQQQTVIKAINE 220
>gi|119944587|ref|YP_942267.1| polynucleotide phosphorylase/polyadenylase [Psychromonas ingrahamii
37]
gi|187611274|sp|A1ST53|PNP_PSYIN RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|119863191|gb|ABM02668.1| Polyribonucleotide nucleotidyltransferase [Psychromonas ingrahamii
37]
Length = 698
Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats.
Identities = 45/241 (18%), Positives = 86/241 (35%), Gaps = 18/241 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +R + + V GS L G+T L TATL + ++ I K
Sbjct: 314 RIDGRDPESIRALDVRTGVLPRTHGSALFTRGETQALVTATLGTQRDAQIIDSIMGEKKD 373
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P G + R+ G + R + +V+ + + +
Sbjct: 374 NFLLHYNFPPYCVGETGFVGSPKRREIGHGRL----AKRGVLAVMPSLEEFPYTVRVVSE 429
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ GA +AL D ++ + V +G + +
Sbjct: 430 ITESNGSSSMASVCGASLALMDAGVPLKASVAGIAMGLVKEGEEFVVLSD---------I 480
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T G I +Q + +++ LN AK ++ +
Sbjct: 481 LGDEDHLGDMDFKVAGTTEG-ITALQMDIKIEGITREIMQIALNQAKAARLHILTVMDQA 539
Query: 238 I 238
+
Sbjct: 540 L 540
Score = 85.3 bits (209), Expect = 6e-15, Method: Composition-based stats.
Identities = 35/228 (15%), Positives = 72/228 (31%), Gaps = 27/228 (11%)
Query: 14 ISLTRRV-SKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKHGWITAEYGMLPR 68
++L V ++ A + + DT + + + ++ + + T G +P
Sbjct: 15 VTLETGVMARQATAAVMCSMDDTCVFVSVVGKNADNQERDFFPLTVNYQEKTYAAGKIPG 74
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
R GR I R+I R +R + Q+I I +
Sbjct: 75 GFFKR------EGRPSEDETLIARLIDRPVRPLFPAGFKNEVQVIATVVSINPEVNPDVV 128
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+ A KG + G G +++ E T D++
Sbjct: 129 AMIATSAA-------------LSISGMPFKGPIGCARVGYKEGEYLLNPTKTELETSDLN 175
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
T ++ V+ +E S+D + D+ +++ K+
Sbjct: 176 LVVSGT-DNAVLMVE--SEAGILSEDVMLGAVVFGHDQQQIVVESIKE 220
>gi|121998524|ref|YP_001003311.1| polynucleotide phosphorylase/polyadenylase [Halorhodospira
halophila SL1]
gi|187610274|sp|A1WXU7|PNP_HALHL RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|121589929|gb|ABM62509.1| Polyribonucleotide nucleotidyltransferase [Halorhodospira halophila
SL1]
Length = 702
Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats.
Identities = 38/241 (15%), Positives = 85/241 (35%), Gaps = 18/241 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +R +++ V GS + G+T + +TL + +V + +
Sbjct: 322 RIDGRDNQTVRPLNVQAGVLPRTHGSAIFTRGETQAIVVSTLGTGRDAQVIDALEGERRE 381
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P G R+ G + R + +V+ I + +
Sbjct: 382 PFMLHYNFPPYCVGETGFIGTPKRREIGHGKL----AKRGVEAVMPSDEEFPYVIRVVSE 437
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
V +++G + A + G ++L D ++ + + +G A+ +
Sbjct: 438 VTESNGSSSMATVCGTSLSLMDAGVPLKAQVAGIAMGLIKEGDEFAVLTD---------I 488
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D + G + +Q + +++ L+ A+ +++ V
Sbjct: 489 LGDEDHLGDMDFKVAGSKDG-VTALQMDIKIDGITREIMEQALDQARSGRLHILEQMNQV 547
Query: 238 I 238
I
Sbjct: 548 I 548
Score = 91.1 bits (224), Expect = 1e-16, Method: Composition-based stats.
Identities = 37/232 (15%), Positives = 75/232 (32%), Gaps = 27/232 (11%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKV----PMWIRNTKHGWITAEYGMLPR 68
++L V++ A+G+ LV DT +L T + + T G +P
Sbjct: 22 VTLETGGVARQADGAVLVDMADTVVLVTVVGRKDPAAARDFLPLTVNYQERTYAAGRIPG 81
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
R GR + R+I R +R + Q+I + +
Sbjct: 82 GFFKR------EGRPSEKETLTCRLIDRPIRPLFPEGFRQEVQVIATVLSLNDEVDADIP 135
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+ G A +G + A G L G +++ + + + D+D
Sbjct: 136 AMIGTSAA-------------LALSGIPFEGPIGACRVGHLDGEFVLNPTFSQTAESDLD 182
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
T ++ V+ +E + + +++ I D+ +
Sbjct: 183 LVVAGTQD-AVLMVE--SEANLLPESTMLDAVLYGHEQMQVAIDTINDLAAE 231
>gi|284006672|emb|CBA71934.1| polyribonucleotide nucleotidyltransferase [Arsenophonus nasoniae]
Length = 708
Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats.
Identities = 44/243 (18%), Positives = 92/243 (37%), Gaps = 18/243 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR+++ +R + + V GS L G+T L TATL + +V +
Sbjct: 315 RIDGREKDMVRALDVRTGVLPRTHGSALFTRGETQALVTATLGTERDAQVIDELMGEYTD 374
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + R+ G + R + +V+ + + + +
Sbjct: 375 RFLFHYNFPPYSVGETGMVGSPKRREIGHGRL----AKRGVLAVMPNQSEFPYTVRVVSE 430
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ GA +AL D ++ + V + + +
Sbjct: 431 ITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKENDDYVVLSD---------I 481
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D + G I +Q + +++ LN AK ++ + ++
Sbjct: 482 LGDEDHLGDMDFKVAGSREG-ISALQMDIKIEGITREIMQVALNQAKGARLHILTIMEEA 540
Query: 238 ISN 240
I+
Sbjct: 541 INR 543
Score = 88.4 bits (217), Expect = 7e-16, Method: Composition-based stats.
Identities = 39/233 (16%), Positives = 77/233 (33%), Gaps = 28/233 (12%)
Query: 14 ISLTRRV-SKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----HGWITAEYGMLPR 68
+++ + ++ A + +V DT + T ++KV + + G +P
Sbjct: 16 VTIETGMMARQATAAVMVNMDDTAVFVTVVGQKKVKEGQDFFPLTVNYQERSYAAGRIPG 75
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
S R GR G I R+I R LR + QII I
Sbjct: 76 SFFRR------EGRPGEGETLIARLIDRPLRPLFPEGFFNEIQIIATVVSINPQVNPDIV 129
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+ GA A G + A G + +++ E + +D
Sbjct: 130 AMIGASAA-------------LSISGIPFNGPIGAARVGYIDDQYVLNPTVDELKSSRLD 176
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
T S ++ V+ +E +++ + ++ +I+ ++ E
Sbjct: 177 LVVAGTSS-AVLMVE--SEADLLTEEQMLGAVVFGHEQQQIVIENIN-ALAAE 225
>gi|332704834|ref|ZP_08424922.1| Polyribonucleotide nucleotidyltransferase [Desulfovibrio africanus
str. Walvis Bay]
gi|332554983|gb|EGJ52027.1| Polyribonucleotide nucleotidyltransferase [Desulfovibrio africanus
str. Walvis Bay]
Length = 745
Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats.
Identities = 45/242 (18%), Positives = 86/242 (35%), Gaps = 18/242 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
+R+ GR +R +S+ + GS L K G+T L ATL +E+ +
Sbjct: 321 VRIDGRDLTTVRPLSIEVGLLPQTHGSALFKRGETSSLAIATLGSSRDEQRIETLTGEIT 380
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P S R+ G RA++ V+ I +
Sbjct: 381 KGFMLHYNFPPFCVNEARFLRGPSRREIGHGNL----AERAIKPVLPADGEFPFTIRVVA 436
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+ ++++G + AA+ G +AL D ++ + + + D
Sbjct: 437 ETMESNGSSSMAAVCGGCLALMDAGVPIKAPVAGIAMGLAKVDDD---------YFVLTD 487
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED+ D+D T G + +Q + A Q+ L AK+ +++
Sbjct: 488 ILGDEDAMGDMDFKVAGTAEG-VTAIQMDIKIAGIPQEVLARALAQAKEARMLILEEMAK 546
Query: 237 VI 238
++
Sbjct: 547 IL 548
Score = 112 bits (279), Expect = 5e-23, Method: Composition-based stats.
Identities = 51/234 (21%), Positives = 81/234 (34%), Gaps = 25/234 (10%)
Query: 13 EISLTRR-VSKYAEGSCLVKFGDTHLLTTAT---LEEKVPMWIRNTKHGWITAEYGMLPR 68
+I L + A+G+ LV+ GDT +L TA L E + + ++ G +P
Sbjct: 18 DIELETGRFANQADGAVLVRSGDTVVLVTAVTQALPEDKGFFPLTCNYQEMSYAAGRIPG 77
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
R GR R + R+I R LR QII +
Sbjct: 78 GYFRR-----EIGRPSDRETLVSRLIDRPLRPSFPKGFRDEVQIIATVLSADKNVNPDVL 132
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+TGA ALH G +A+ G + G + Y + +
Sbjct: 133 AVTGASAALH-------------ISKIPFNGPLASTRVGYVNGGFVAFPTYQNITELSSL 179
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNEV 242
+ +V V+G AE S+D + I L LQ + + ++
Sbjct: 180 NMVLAASRNAVVMVEGGAE--FMSEDLLAEAIAFGHKMIIPLFDLQDE-LREKI 230
>gi|94501380|ref|ZP_01307900.1| polyribonucleotide nucleotidyltransferase [Oceanobacter sp. RED65]
gi|94426493|gb|EAT11481.1| polyribonucleotide nucleotidyltransferase [Oceanobacter sp. RED65]
Length = 698
Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats.
Identities = 44/243 (18%), Positives = 95/243 (39%), Gaps = 18/243 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +R++++ V K GS L G+T + T TL + +V ++ +
Sbjct: 319 RIDGRDNKTVRDLNIQTDVLKGTHGSALFTRGETQSIGTVTLGSTRDAQVVEFLHEVQKD 378
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + A R+ G + R +++++ + + +
Sbjct: 379 NFLFHYNFPPYSVGECGRMGAPGRREVGHGRL----ARRGVQAMMPSLEDFPYTVRVVSE 434
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ A +AL D ++ + V +G ++ +
Sbjct: 435 ITESNGSSSMASVCSASLALMDAGVPIKAPVAGIAMGLVKEGERFSVLTD---------I 485
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D +++G I +Q + ++ L A D ++K +V
Sbjct: 486 LGDEDHLGDMDFKVAGSEAG-ITALQMDIKIQGITEQIMEIALEQALDARMTILKQMNEV 544
Query: 238 ISN 240
I+
Sbjct: 545 IAE 547
Score = 102 bits (253), Expect = 5e-20, Method: Composition-based stats.
Identities = 36/230 (15%), Positives = 75/230 (32%), Gaps = 28/230 (12%)
Query: 13 EISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----HGWITAEYGMLP 67
E++L + +++ A G+ LV G+ +L T +++ + G +P
Sbjct: 17 EVTLETQRIARQASGAVLVTMGEIQVLATVVGKKETKPGQDFFPLTVNYQEKYYAAGKIP 76
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R R + R+I R +R + + Q+++ +
Sbjct: 77 GGFIKR------ENRPSEKETLTSRLIDRPIRPLFPEGYMNEVQVVLTVVSADKENDPDI 130
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY-PIVDLDYGEDSTID 186
AA+ GA A G + A G +++ Y + T
Sbjct: 131 AAMIGASAA-------------LAISGIPFDGPIGAARVGYDAENGYVLNPTYAQLETSL 177
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+D T+ ++ V+ A+ S+D + A + K+
Sbjct: 178 LDMVVAGTED-AVLMVESEAKE--LSEDQMLGGVLFAHQEFQVAVNAVKE 224
>gi|224476402|ref|YP_002634008.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus carnosus
subsp. carnosus TM300]
gi|254782735|sp|B9DPE0|PNP_STACT RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|222421009|emb|CAL27823.1| polyribonucleotide nucleotidyltransferase [Staphylococcus carnosus
subsp. carnosus TM300]
Length = 701
Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats.
Identities = 46/244 (18%), Positives = 90/244 (36%), Gaps = 18/244 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
+R GR+ +++R + + A GS L G T L+ TL E ++ + +
Sbjct: 318 VRPDGRKPDEIRPLDSEVGLLPRAHGSGLFTRGQTQALSVLTLGAMSEYQLIDGLGTEEE 377
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y S G A R+ G RALR ++ + + I
Sbjct: 378 KRFMHHYNFPNFSVGETGPVRAPGRREIGHGALG----ERALRYIIPDTKDFPYTVRIVS 433
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V++++G + A+I G+ +AL D ++ + V + + D
Sbjct: 434 EVLESNGSSSQASICGSTLALMDAGVPIKAPVAGIAMGLVTRDD---------NYTILTD 484
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED+ D+D T+ G I +Q + +++ L A+ ++ +
Sbjct: 485 IQGMEDALGDMDFKVAGTEKG-ITAIQMDIKIDGLTREIIEEALEQARVGRLTILNHMLE 543
Query: 237 VISN 240
I
Sbjct: 544 TIDQ 547
Score = 112 bits (279), Expect = 5e-23, Method: Composition-based stats.
Identities = 42/231 (18%), Positives = 83/231 (35%), Gaps = 26/231 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKV---PMWIRNTKHGWITAEYGMLP 67
R +S+ ++K A G+ LV++GDT +L+TAT ++ + + G +P
Sbjct: 15 RPLSIETGQMAKQANGAVLVRYGDTVVLSTATASKEPRDGDFFPLMVNYEEKMYAAGKIP 74
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R GR + R+I R +R + QII D
Sbjct: 75 GGFKKR------EGRPADEATLTARLIDRPIRPLFPKGYRHDVQIINMVLSADPDCSPEM 128
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
AA+ G+ +A +G +A ++ G + G +++ + +
Sbjct: 129 AAMIGSSMA-------------LSVSDIPFQGPIAGVNVGYIDGEYVINPTVEQKEVSRL 175
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
D + V+ A ++ + + I L+ Q+++I
Sbjct: 176 DLEVAGHRD-AVNMVEAGASE--ITEKEMLDAIFFGHEEIKRLVDFQQEII 223
>gi|213018630|ref|ZP_03334438.1| polyribonucleotide nucleotidyltransferase [Wolbachia endosymbiont
of Culex quinquefasciatus JHB]
gi|212995581|gb|EEB56221.1| polyribonucleotide nucleotidyltransferase [Wolbachia endosymbiont
of Culex quinquefasciatus JHB]
Length = 758
Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats.
Identities = 45/245 (18%), Positives = 87/245 (35%), Gaps = 18/245 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTT----ATLEEKVPMWIRNTKH 56
+R+ R+ +++R+I + + GS L G T L T +E++ I +
Sbjct: 310 VRIDSRKYDEIRQIEIEADILPKTHGSALFTRGSTQALVVTALGTTQDEQIVDDIEGDRR 369
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P + G A R+ G + +A+ V+ + I +
Sbjct: 370 EHFMLHYNFPPFAVGEASAIRAPGRREIGHGKL----AWKAIHPVLPDKSEFPYTIRVVS 425
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+++++DG + A + G +AL D ++ + + + D
Sbjct: 426 EIMESDGSSSMATVCGTSIALMDTGVPIKAPVAGIAMGLIKD---------KNEHIILSD 476
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T G I +Q + S + L AK +++
Sbjct: 477 ILGDEDYLGDMDFKVAGTSEG-ITALQMDMKIPGISFEIVEKSLEQAKVGRLHILEKMNA 535
Query: 237 VISNE 241
VIS
Sbjct: 536 VISEH 540
Score = 89.9 bits (221), Expect = 3e-16, Method: Composition-based stats.
Identities = 41/231 (17%), Positives = 77/231 (33%), Gaps = 25/231 (10%)
Query: 10 QMREISLTRR-VSKYAEGSCLVKFGDTHLL---TTATLEEKVPMWIRNTKHGWITAEYGM 65
+ R +SL +++ A+GS +VK L T EE V N + + G
Sbjct: 12 EGRTLSLETGKIARQADGSVVVKLWRYFYLSHCCTKKKEESVDFLPLNVQFIAKSYAMGK 71
Query: 66 LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125
+P R G+ R I R+I R++R + ++ +
Sbjct: 72 IPGGFFKR------EGKPSDRETLISRVIDRSIRPLFPEGFHDEISVVCNLLTYDTVNSP 125
Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185
A+ G AL + I++ E
Sbjct: 126 EVPALIGTVAALAISGVPFHFTIAGV------------MVGCDENNNYILNPSVQEMKAS 173
Query: 186 DVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
++D F+ D I+ V+ +E S+++ + + + +IKL K+
Sbjct: 174 NLDL-FLSGDENSILMVE--SEVKELSEENVLNAIKFGHEHLQPVIKLIKE 221
>gi|89072579|ref|ZP_01159151.1| polyribonucleotide nucleotidyltransferase [Photobacterium sp.
SKA34]
gi|89051683|gb|EAR57136.1| polyribonucleotide nucleotidyltransferase [Photobacterium sp.
SKA34]
Length = 708
Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats.
Identities = 45/242 (18%), Positives = 91/242 (37%), Gaps = 18/242 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR+++ +R + + V GS L G+T L TATL + ++ + K
Sbjct: 314 RIDGREKDMVRALDVRTGVLPRTHGSSLFTRGETQALVTATLGTQRDAQIIDGLTGEKKD 373
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P G + R+ G + R + +V+ + + +
Sbjct: 374 HFLLHYNFPPYCVGETGFVGSPKRREIGHGKL----AKRGIAAVMPSVDEFPYTVRVVSE 429
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ G +AL D ++ + V +G + +
Sbjct: 430 ITESNGSSSMASVCGTSLALMDAGVPIKASVAGIAMGLVKEGDDFVVLSD---------I 480
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D TD G I +Q + +++ LN AK ++ + +
Sbjct: 481 LGDEDHLGDMDFKVAGTDDG-ITALQMDIKIEGITKEIMQIALNQAKGARKHILSVMDNA 539
Query: 238 IS 239
I+
Sbjct: 540 IN 541
Score = 90.3 bits (222), Expect = 2e-16, Method: Composition-based stats.
Identities = 32/228 (14%), Positives = 65/228 (28%), Gaps = 27/228 (11%)
Query: 14 ISLTRRV-SKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKHGWITAEYGMLPR 68
++L V ++ A + +V DT + + + E + + T G +P
Sbjct: 15 VTLETGVMARQATAAVMVSMDDTSVFVSVVGKKTAVEGQDFFPLTVNYQERTYAAGKIPG 74
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
R GR R+I R +R + Q+I +
Sbjct: 75 GFFKR------EGRPSEGETLTARLIDRPIRPLFPDDFKNEVQVIATVVSVNPAVNPDIV 128
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
+ G A G + A G + +++ E +D
Sbjct: 129 TMIGTSAA-------------LTISGIPFNGPIGAARVGYINDQFVLNPSNVELEESRLD 175
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
T ++ V+ +E S++ + D+ I +
Sbjct: 176 LVVAGTKD-AVLMVE--SEADRLSEEQMLQAVVFGHDQQQVAINAINE 220
>gi|150389523|ref|YP_001319572.1| polynucleotide phosphorylase/polyadenylase [Alkaliphilus
metalliredigens QYMF]
gi|187470926|sp|A6TNZ5|PNP3_ALKMQ RecName: Full=Polyribonucleotide nucleotidyltransferase 3; AltName:
Full=Polynucleotide phosphorylase 3; Short=PNPase 3
gi|149949385|gb|ABR47913.1| Polyribonucleotide nucleotidyltransferase [Alkaliphilus
metalliredigens QYMF]
Length = 702
Score = 149 bits (376), Expect = 3e-34, Method: Composition-based stats.
Identities = 46/244 (18%), Positives = 89/244 (36%), Gaps = 18/244 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEE----KVPMWIRNTKH 56
+R R+ +++R IS + A G+ L G+T +LT TL + + I
Sbjct: 311 IRPDNRKLDEIRPISTQVGILPRAHGTGLFNRGETQVLTITTLGDLRDAQRIDGIGEEDE 370
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P S G S R+ G + RAL ++ I +
Sbjct: 371 KRYMHHYNFPPYSVGETRFMRGPSRREIGHGAL----VERALLPMIPSKEDFPYAIRLVS 426
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V+ +G + A++ G+ ++L D ++ + + + I
Sbjct: 427 EVLTCNGSSSQASVCGSTLSLMDAGVPIKRMVAGIAMGLIKEDDQVVILSD--------- 477
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED+ D+D T+ G I +Q + A + L A+ ++ K+
Sbjct: 478 IQGMEDALGDMDLKVAGTEEG-ITAMQMDIKIAGIDRGIMETALEQARIGRLHILNKMKE 536
Query: 237 VISN 240
I++
Sbjct: 537 SITS 540
Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats.
Identities = 41/234 (17%), Positives = 87/234 (37%), Gaps = 27/234 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRN----TKHGWITAEYGML 66
R + V++ A+GSC++K+GDT +L TA ++ + + G +
Sbjct: 12 RPFVVEIGKVAELAQGSCMIKYGDTTVLVTACASKEPKEGLDFFPLSCDYEEKLYAVGKI 71
Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
P R R ++ R+I R +R + Q+I + D
Sbjct: 72 PGGFIKR------ESRPSEKATLTARLIDRPIRPLFPKGYHNDVQVIATVLSMDQDCPPD 125
Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
+A+ G+ +A + G A++S GM+ G IV+ +
Sbjct: 126 ISAMIGSSIA-------------LSVSNIPFMGPTASVSVGMIDGEYIVNPTSKQKEDST 172
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
++ T + I+ ++ A ++ + A + I ++ ++++S
Sbjct: 173 LELIVSGTKN-AIMMIEAGANE--LTEAQILDAIMFAHEEIKKIVAFIENIVSE 223
>gi|302332880|gb|ADL23073.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus
subsp. aureus JKD6159]
Length = 698
Score = 149 bits (376), Expect = 3e-34, Method: Composition-based stats.
Identities = 44/244 (18%), Positives = 88/244 (36%), Gaps = 18/244 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56
+R GR+ +++R + + GS L G T L+ T + ++ + +
Sbjct: 318 IRPDGRKPDEIRPLDSEVGILPRTHGSGLFTRGQTQALSVLTLGALGDYQLIDGLGPEEE 377
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y S G A R+ G RAL+ ++ +A I I
Sbjct: 378 KRFMHHYNFPNFSVGETGPVRAPGRREIGHGALG----ERALKYIIPDTADFPYTIRIVS 433
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V++++G + A+I G+ +AL D ++ + V + + D
Sbjct: 434 EVLESNGSSSQASICGSTLALMDAGVPIKAPVAGIAMGLVTRED---------SYTILTD 484
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED+ D+D T G I +Q + +++ L A+ +++
Sbjct: 485 IQGMEDALGDMDFKVAGTKEG-ITAIQMDIKIDGLTREIIEEALEQARRGRLEIMNHMLQ 543
Query: 237 VISN 240
I
Sbjct: 544 TIDQ 547
Score = 111 bits (276), Expect = 1e-22, Method: Composition-based stats.
Identities = 42/231 (18%), Positives = 84/231 (36%), Gaps = 26/231 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKV---PMWIRNTKHGWITAEYGMLP 67
R +++ ++K A G+ LV++GDT +L+TAT ++ + + G +P
Sbjct: 15 RSLTIETGQLAKQANGAVLVRYGDTVVLSTATASKEPRDGDFFPLTVNYEEKMYAAGKIP 74
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R GR G + R+I R +R + QI+ D +
Sbjct: 75 GGFKKR------EGRPGDDATLTARLIDRPIRPLFPKGYKHDVQIMNMVLSADPDCSPQM 128
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
AA+ G+ +A +G +A ++ G + G I++ E +
Sbjct: 129 AAMIGSSMA-------------LSVSDIPFQGPIAGVNVGYIDGKYIINPTVEEKEVSRL 175
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
D + V+ A ++ + + I L+ Q+ ++
Sbjct: 176 DLEVAGHKD-AVNMVEAGASE--ITEQEMLEAIFFGHEEIQRLVDFQQQIV 223
>gi|312901916|ref|ZP_07761179.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis
TX0470]
gi|311290983|gb|EFQ69539.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis
TX0470]
Length = 704
Score = 149 bits (376), Expect = 3e-34, Method: Composition-based stats.
Identities = 44/243 (18%), Positives = 86/243 (35%), Gaps = 18/243 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56
+R GR+ +++R +S + GS L G T L+ T E ++ +
Sbjct: 318 IRPDGRKLDEIRHLSSEVSILPRVHGSGLFTRGQTQALSVCTLAPLGEHQIIDGLGVQDS 377
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y S G+ + + R+ G RAL ++ I +
Sbjct: 378 KRFIHHYNFPQFSVGSTGRAGSPGRREIGHGALG----ERALAQIIPSEEDFPYTIRLVA 433
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V++++G + A+I +AL D ++ + V G + D
Sbjct: 434 EVLESNGSSSQASICAGTLALMDAGVPIKAPVAGIAMGLVSDGE---------NYTILTD 484
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T G I +Q + ++ L+ AK ++++
Sbjct: 485 IQGLEDHLGDMDFKVAGTKDG-ITALQMDIKIQGITEQILTEALDQAKKARMEILEELTT 543
Query: 237 VIS 239
I+
Sbjct: 544 TIA 546
Score = 108 bits (269), Expect = 7e-22, Method: Composition-based stats.
Identities = 44/232 (18%), Positives = 88/232 (37%), Gaps = 26/232 (11%)
Query: 12 REISLT-RRVSKYAEGSCLVKFGDTHLLTTATLEEK---VPMWIRNTKHGWITAEYGMLP 67
R + + +++K A G+ LV++GDT +L+ A ++ V + + G +P
Sbjct: 14 RPLEVKSAQLAKKANGAVLVRYGDTVVLSAAVASKEAKDVDFFPLTVNYEEKMYAVGKIP 73
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R GR R+ R+I R +R + QI ++ D
Sbjct: 74 GGFIKR------EGRPSERATLTARLIDRPIRPMFSEGFRNEVQITNIVMSVEQDCTPEM 127
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
AA+ G+ +A G +A + G + G +++ + D+
Sbjct: 128 AAMFGSSLA-------------LAISDIPFDGPIAGVDVGRINGEYVLNPTVEQAEQTDI 174
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
+ T I V+ A+ S++ L D I +L+ Q+++++
Sbjct: 175 ELTVAGTKE-AINMVESGAKE--VSEEDMLGALLFGFDAIKELVAFQEEIVA 223
>gi|149189790|ref|ZP_01868071.1| polynucleotide phosphorylase/polyadenylase [Vibrio shilonii AK1]
gi|148836439|gb|EDL53395.1| polynucleotide phosphorylase/polyadenylase [Vibrio shilonii AK1]
Length = 713
Score = 149 bits (376), Expect = 3e-34, Method: Composition-based stats.
Identities = 42/242 (17%), Positives = 92/242 (38%), Gaps = 18/242 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR+++ +R + + V GS L G+T + TATL + ++ + +
Sbjct: 316 RIDGREKDMVRALDVRTGVLPRTHGSSLFTRGETQAIVTATLGTQRDAQIIDELTGERKD 375
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P G + R+ G + R + +V+ + + +
Sbjct: 376 HFLLHYNFPPYCVGETGFVGSPKRREIGHGKL----AKRGIAAVMPSVEEFPYTVRVVSE 431
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ G +AL D ++ + V +G + +
Sbjct: 432 ITESNGSSSMASVCGTSLALMDAGVPIKSSVAGIAMGLVKEGDDFVVLSD---------I 482
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T++G I +Q + +++ LN A+ ++ + +
Sbjct: 483 LGDEDHLGDMDFKVAGTNTG-ITALQMDIKIEGITKEIMQIALNQAQGARKHILSVMDEA 541
Query: 238 IS 239
IS
Sbjct: 542 IS 543
Score = 91.8 bits (226), Expect = 7e-17, Method: Composition-based stats.
Identities = 34/228 (14%), Positives = 73/228 (32%), Gaps = 27/228 (11%)
Query: 14 ISLTRRV-SKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKHGWITAEYGMLPR 68
++L V ++ A + +V DT + + + E + + T G +P
Sbjct: 17 VTLETGVIARQATAAVMVTMDDTSVFVSVVGKKEAVEGQDFFPLTVNYQERTYAAGKIPG 76
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
R GR R+I R +R + + Q+I + +
Sbjct: 77 GFFKR------EGRPSEGETLTARLIDRPIRPLFPDAFKNEVQVIATVMSVNPNVQPDMV 130
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
+ G A G + A G + G +++ E +D
Sbjct: 131 TMIGTSAA-------------LAISGIPFNGPIGAARVGHIDGQLVLNPSNTELENSKLD 177
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
T+ G ++ V+ +E +++ + + D+ +IK +
Sbjct: 178 LVVAGTE-GAVLMVE--SEADNLTEEEMLSAVVYGHDQQQVVIKAINE 222
>gi|316931583|ref|YP_004106565.1| polyribonucleotide nucleotidyltransferase [Rhodopseudomonas
palustris DX-1]
gi|315599297|gb|ADU41832.1| polyribonucleotide nucleotidyltransferase [Rhodopseudomonas
palustris DX-1]
Length = 722
Score = 149 bits (376), Expect = 3e-34, Method: Composition-based stats.
Identities = 49/241 (20%), Positives = 88/241 (36%), Gaps = 18/241 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +R I V A GS L G+T L TL +E+ + T
Sbjct: 316 RIDGRDSKTVRSILAQAGVLPRAHGSALFTRGETQALVVTTLGTGEDEQYVDSLAGTYKE 375
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + R+ G + RA+ V+ I + +
Sbjct: 376 TFLLHYNFPPYSVGETGRLGGTKRREIGHGKL----AWRAIHPVLPPHHEFPYTIRVVSE 431
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ GA +AL D ++ + + +L+G A+ +
Sbjct: 432 ITESNGSSSMASVCGASLALMDAGVPLKRPTAGIAMGLILEGERFAVLSD---------I 482
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T+ G I +Q + +++ L AKD ++
Sbjct: 483 LGDEDHLGDMDFKVAGTEQG-ITSLQMDIKIGGITEEIMKVALGQAKDGRIHILGEMSKA 541
Query: 238 I 238
+
Sbjct: 542 L 542
Score = 111 bits (276), Expect = 1e-22, Method: Composition-based stats.
Identities = 34/235 (14%), Positives = 75/235 (31%), Gaps = 28/235 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKHGWITAEYGML 66
R + L V++ A+G+ + +G+T +L T E V + G +
Sbjct: 14 RPLKLETGKVARQADGAVVATYGETVVLATVVAAKAPREGVDFLPLTVDYQEKAYAAGRI 73
Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
P R GR + + R+I R +R + Q+I+ +
Sbjct: 74 PGGYFKR------EGRPTEKETLVSRLIDRPIRPLFADGWRNETQVIVTVLSHDMENDPD 127
Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
A+ A A +G + A G + +++ E +
Sbjct: 128 VLAMVAASAA-------------LTLSGAPFRGPIGAARVGFINDEYVLNPVLDEMAETQ 174
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
++ T ++ V+ A+ S++ + +I + ++ +
Sbjct: 175 LELVVAGTAD-AVLMVESEAKE--LSEEIMLGAVMFGHRHFQPVIDAIIE-LAEK 225
>gi|15924264|ref|NP_371798.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus
subsp. aureus Mu50]
gi|15926857|ref|NP_374390.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus
subsp. aureus N315]
gi|57651844|ref|YP_186150.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus
subsp. aureus COL]
gi|87160870|ref|YP_493864.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus
subsp. aureus USA300_FPR3757]
gi|88194984|ref|YP_499784.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus
subsp. aureus NCTC 8325]
gi|148267764|ref|YP_001246707.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus
subsp. aureus JH9]
gi|150393823|ref|YP_001316498.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus
subsp. aureus JH1]
gi|151221395|ref|YP_001332217.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus
subsp. aureus str. Newman]
gi|156979595|ref|YP_001441854.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus
subsp. aureus Mu3]
gi|161509440|ref|YP_001575099.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus
subsp. aureus USA300_TCH1516]
gi|221142508|ref|ZP_03567001.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus
subsp. aureus str. JKD6009]
gi|253316410|ref|ZP_04839623.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus
subsp. aureus str. CF-Marseille]
gi|253733488|ref|ZP_04867653.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus
subsp. aureus TCH130]
gi|255006061|ref|ZP_05144662.2| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus
subsp. aureus Mu50-omega]
gi|257795670|ref|ZP_05644649.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
A9781]
gi|258416073|ref|ZP_05682341.1| polyribopolyribonucleotide nucleotidyltransferase [Staphylococcus
aureus A9763]
gi|258421656|ref|ZP_05684580.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
A9719]
gi|258423885|ref|ZP_05686770.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
A9635]
gi|258434812|ref|ZP_05688886.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
A9299]
gi|258444612|ref|ZP_05692941.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
A8115]
gi|258447555|ref|ZP_05695699.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
A6300]
gi|258449397|ref|ZP_05697500.1| polyribopolyribonucleotide nucleotidyltransferase [Staphylococcus
aureus A6224]
gi|258452573|ref|ZP_05700579.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
A5948]
gi|258454776|ref|ZP_05702740.1| polyribopolyribonucleotide nucleotidyltransferase [Staphylococcus
aureus A5937]
gi|262048163|ref|ZP_06021050.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
D30]
gi|262051336|ref|ZP_06023559.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
930918-3]
gi|269202891|ref|YP_003282160.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus
subsp. aureus ED98]
gi|282892762|ref|ZP_06300997.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
A8117]
gi|282920518|ref|ZP_06328239.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
A9765]
gi|282927616|ref|ZP_06335232.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
A10102]
gi|284024267|ref|ZP_06378665.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus
subsp. aureus 132]
gi|294848270|ref|ZP_06789017.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
A9754]
gi|295406211|ref|ZP_06816018.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
A8819]
gi|296274832|ref|ZP_06857339.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus
subsp. aureus MR1]
gi|297244439|ref|ZP_06928322.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
A8796]
gi|304381162|ref|ZP_07363815.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus ATCC BAA-39]
gi|81694630|sp|Q5HGF7|PNP_STAAC RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|81705784|sp|Q7A5X7|PNP_STAAN RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|81781693|sp|Q99UJ8|PNP_STAAM RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|117940100|sp|Q2FHG4|PNP_STAA3 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|117940102|sp|Q2FZ20|PNP_STAA8 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|187611294|sp|A7X1Q8|PNP_STAA1 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|187611295|sp|A6QGH3|PNP_STAAE RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|189037316|sp|A6U193|PNP_STAA2 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|189037317|sp|A5ISF8|PNP_STAA9 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|189037318|sp|A8Z3V4|PNP_STAAT RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|13701074|dbj|BAB42369.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus N315]
gi|14247044|dbj|BAB57436.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus Mu50]
gi|57286030|gb|AAW38124.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus COL]
gi|87126844|gb|ABD21358.1| polyribopolyribonucleotide nucleotidyltransferase [Staphylococcus
aureus subsp. aureus USA300_FPR3757]
gi|87202542|gb|ABD30352.1| polyribonucleotide nucleotidyltransferase, putative [Staphylococcus
aureus subsp. aureus NCTC 8325]
gi|147740833|gb|ABQ49131.1| Polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus JH9]
gi|149946275|gb|ABR52211.1| Polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus JH1]
gi|150374195|dbj|BAF67455.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus str. Newman]
gi|156721730|dbj|BAF78147.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus Mu3]
gi|160368249|gb|ABX29220.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus USA300_TCH1516]
gi|253728542|gb|EES97271.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus
subsp. aureus TCH130]
gi|257789642|gb|EEV27982.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
A9781]
gi|257839221|gb|EEV63697.1| polyribopolyribonucleotide nucleotidyltransferase [Staphylococcus
aureus A9763]
gi|257842342|gb|EEV66767.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
A9719]
gi|257845914|gb|EEV69943.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
A9635]
gi|257849173|gb|EEV73155.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
A9299]
gi|257850105|gb|EEV74058.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
A8115]
gi|257853746|gb|EEV76705.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
A6300]
gi|257857385|gb|EEV80283.1| polyribopolyribonucleotide nucleotidyltransferase [Staphylococcus
aureus A6224]
gi|257859791|gb|EEV82633.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
A5948]
gi|257863159|gb|EEV85923.1| polyribopolyribonucleotide nucleotidyltransferase [Staphylococcus
aureus A5937]
gi|259160711|gb|EEW45732.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
930918-3]
gi|259163729|gb|EEW48284.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
D30]
gi|262075181|gb|ACY11154.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus
subsp. aureus ED98]
gi|282590619|gb|EFB95696.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
A10102]
gi|282594180|gb|EFB99167.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
A9765]
gi|282764759|gb|EFC04884.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
A8117]
gi|283470489|emb|CAQ49700.1| polyribonucleotide nucleotidyltransferase
(Polynucleotidephosphorylase) (PNPase) (Vegetative
protein 15) (VEG15) [Staphylococcus aureus subsp. aureus
ST398]
gi|285816956|gb|ADC37443.1| Polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
04-02981]
gi|294825070|gb|EFG41492.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
A9754]
gi|294968799|gb|EFG44821.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
A8819]
gi|297178469|gb|EFH37715.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
A8796]
gi|302751097|gb|ADL65274.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus
subsp. aureus str. JKD6008]
gi|304340145|gb|EFM06086.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus ATCC BAA-39]
gi|312829668|emb|CBX34510.1| polyribonucleotide nucleotidyltransferase
(Polynucleotidephosphorylase) (PNPase) (Vegetative
protein 15) (VEG15) [Staphylococcus aureus subsp. aureus
ECT-R 2]
gi|315131068|gb|EFT87052.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus
subsp. aureus CGS03]
gi|315198516|gb|EFU28845.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus
subsp. aureus CGS01]
gi|320140909|gb|EFW32756.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus MRSA131]
gi|320144375|gb|EFW36141.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus MRSA177]
gi|323441055|gb|EGA98762.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus
O11]
gi|323443924|gb|EGB01535.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus
O46]
gi|329313944|gb|AEB88357.1| Polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus T0131]
gi|329727448|gb|EGG63904.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus 21172]
gi|329727820|gb|EGG64271.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus 21189]
Length = 698
Score = 149 bits (376), Expect = 3e-34, Method: Composition-based stats.
Identities = 44/244 (18%), Positives = 88/244 (36%), Gaps = 18/244 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56
+R GR+ +++R + + GS L G T L+ T + ++ + +
Sbjct: 318 IRPDGRKPDEIRPLDSEVGILPRTHGSGLFTRGQTQALSVLTLGALGDYQLIDGLGPEEE 377
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y S G A R+ G RAL+ ++ +A I I
Sbjct: 378 KRFMHHYNFPNFSVGETGPVRAPGRREIGHGALG----ERALKYIIPDTADFPYTIRIVS 433
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V++++G + A+I G+ +AL D ++ + V + + D
Sbjct: 434 EVLESNGSSSQASICGSTLALMDAGVPIKAPVAGIAMGLVTRED---------SYTILTD 484
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED+ D+D T G I +Q + +++ L A+ +++
Sbjct: 485 IQGMEDALGDMDFKVAGTKEG-ITAIQMDIKIDGLTREIIEEALEQARRGRLEIMNHMLQ 543
Query: 237 VISN 240
I
Sbjct: 544 TIDQ 547
Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats.
Identities = 42/231 (18%), Positives = 84/231 (36%), Gaps = 26/231 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKV---PMWIRNTKHGWITAEYGMLP 67
R +++ ++K A G+ LV++GDT +L+TAT ++ + + G +P
Sbjct: 15 RSLTIETGQLAKQANGAVLVRYGDTVVLSTATASKEPRDGDFFPLTVNYEEKMYAAGKIP 74
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R GR G + R+I R +R + QI+ D +
Sbjct: 75 GGFKKR------EGRPGDDATLTARLIDRPIRPLFPKGYKHDVQIMNMVLSADPDCSPQM 128
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
AA+ G+ +A +G +A ++ G + G I++ E +
Sbjct: 129 AAMIGSSMA-------------LSVSDIPFQGPIAGVNVGYIDGKYIINPTVEEKEVSRL 175
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
D + V+ A ++ + + I L+ Q+ ++
Sbjct: 176 DLEVAGHKD-AVNMVEAGASE--ITEQEMLEAIFFGHEEIQRLVDFQQQIV 223
>gi|49483437|ref|YP_040661.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus
subsp. aureus MRSA252]
gi|257425328|ref|ZP_05601753.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus 55/2053]
gi|257427989|ref|ZP_05604387.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus 65-1322]
gi|257430622|ref|ZP_05607004.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus 68-397]
gi|257433382|ref|ZP_05609740.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus E1410]
gi|257436224|ref|ZP_05612271.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus M876]
gi|282903829|ref|ZP_06311717.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus C160]
gi|282905592|ref|ZP_06313447.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus Btn1260]
gi|282908567|ref|ZP_06316397.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus WW2703/97]
gi|282910846|ref|ZP_06318649.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus WBG10049]
gi|282914051|ref|ZP_06321838.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus M899]
gi|282916534|ref|ZP_06324292.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus D139]
gi|282918973|ref|ZP_06326708.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus C427]
gi|282924096|ref|ZP_06331772.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus C101]
gi|283770338|ref|ZP_06343230.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus H19]
gi|283958017|ref|ZP_06375468.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus A017934/97]
gi|293501083|ref|ZP_06666934.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus 58-424]
gi|293526631|ref|ZP_06671316.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus M1015]
gi|297591281|ref|ZP_06949919.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus MN8]
gi|81651256|sp|Q6GHG1|PNP_STAAR RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|49241566|emb|CAG40252.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus MRSA252]
gi|257271785|gb|EEV03923.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus 55/2053]
gi|257274830|gb|EEV06317.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus 65-1322]
gi|257278750|gb|EEV09369.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus 68-397]
gi|257281475|gb|EEV11612.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus E1410]
gi|257284506|gb|EEV14626.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus M876]
gi|282314068|gb|EFB44460.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus C101]
gi|282316783|gb|EFB47157.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus C427]
gi|282319021|gb|EFB49373.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus D139]
gi|282322119|gb|EFB52443.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus M899]
gi|282325451|gb|EFB55760.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus WBG10049]
gi|282327629|gb|EFB57912.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus WW2703/97]
gi|282330884|gb|EFB60398.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus Btn1260]
gi|282595447|gb|EFC00411.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus C160]
gi|283460485|gb|EFC07575.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus H19]
gi|283790166|gb|EFC28983.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus A017934/97]
gi|290920703|gb|EFD97766.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus M1015]
gi|291096088|gb|EFE26349.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus 58-424]
gi|297576167|gb|EFH94883.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus MN8]
gi|312438346|gb|ADQ77417.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus TCH60]
gi|315194162|gb|EFU24555.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus
subsp. aureus CGS00]
Length = 698
Score = 149 bits (376), Expect = 3e-34, Method: Composition-based stats.
Identities = 44/244 (18%), Positives = 88/244 (36%), Gaps = 18/244 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56
+R GR+ +++R + + GS L G T L+ T + ++ + +
Sbjct: 318 IRPDGRKPDEIRPLDSEVGILPRTHGSGLFTRGQTQALSVLTLGALGDYQLIDGLGPEEE 377
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y S G A R+ G RAL+ ++ +A I I
Sbjct: 378 KRFMHHYNFPNFSVGETGPVRAPGRREIGHGALG----ERALKYIIPDTADFPYTIRIVS 433
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V++++G + A+I G+ +AL D ++ + V + + D
Sbjct: 434 EVLESNGSSSQASICGSTLALMDAGVPIKAPVAGIAMGLVTRED---------SYTILTD 484
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED+ D+D T G I +Q + +++ L A+ +++
Sbjct: 485 IQGMEDALGDMDFKVAGTKEG-ITAIQMDIKIDGLTREIIEEALEQARRGRLEIMNHMLQ 543
Query: 237 VISN 240
I
Sbjct: 544 TIDQ 547
Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats.
Identities = 42/231 (18%), Positives = 84/231 (36%), Gaps = 26/231 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKV---PMWIRNTKHGWITAEYGMLP 67
R +++ ++K A G+ LV++GDT +L+TAT ++ + + G +P
Sbjct: 15 RSLTIETGQLAKQANGAVLVRYGDTVVLSTATASKEPRDGDFFPLTVNYEEKMYAAGKIP 74
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R GR G + R+I R +R + QI+ D +
Sbjct: 75 GGFKKR------EGRPGDDATLTARLIDRPIRPLFPKGYKHDVQIMNMVLSADPDCSPQM 128
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
AA+ G+ +A +G +A ++ G + G I++ E +
Sbjct: 129 AAMIGSSMA-------------LSVSDIPFQGPIAGVNVGYIDGKYIINPTVEEKEVSRL 175
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
D + V+ A ++ + + I L+ Q+ ++
Sbjct: 176 DLEVAGHKD-AVNMVEAGASE--ITEQEMLEAIFFGHEEIQRLVDFQQQIV 223
>gi|153001784|ref|YP_001367465.1| polynucleotide phosphorylase/polyadenylase [Shewanella baltica
OS185]
gi|187611290|sp|A6WRG3|PNP_SHEB8 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|151366402|gb|ABS09402.1| Polyribonucleotide nucleotidyltransferase [Shewanella baltica
OS185]
Length = 700
Score = 149 bits (376), Expect = 3e-34, Method: Composition-based stats.
Identities = 42/240 (17%), Positives = 88/240 (36%), Gaps = 10/240 (4%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R+ GR+ + +R +S+ V GS L G+T L T TL + ++ G T
Sbjct: 314 RIDGREPDMIRALSVLAGVLPRTHGSALFTRGETQALVTCTLGTERDAQKIDSIMGERTN 373
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
+ + V + G R ++ R + +V+ +A + + ++ ++
Sbjct: 374 RFMLHYNFPPYSVGETGMVGSPKRREIGHGKLAWRGINAVMPSAAEFPYSVRVVSEITES 433
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
+G + A++ G +AL D ++ + V +G + + E
Sbjct: 434 NGSSSMASVCGTSLALMDAGVPIKTSVAGIAMGLVKEGDDFVVLSD---------ILGDE 484
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
D D+D T G I +Q + +++ L A ++ + I +
Sbjct: 485 DHLGDMDFKVAGTRDG-ITALQMDIKIEGITKEIMDIALQQAYGARVHILNVMDQAIGSH 543
Score = 94.1 bits (232), Expect = 2e-17, Method: Composition-based stats.
Identities = 37/228 (16%), Positives = 76/228 (33%), Gaps = 27/228 (11%)
Query: 14 ISLTRRV-SKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----HGWITAEYGMLPR 68
++L V ++ A+ + L GDT +L T +++ + T G +P
Sbjct: 15 VTLETGVIARQADAAVLASMGDTTVLVTVVGKKEADAGRDFFPLTVNYQEKTYAAGKIPG 74
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
R GR I R+I R +R + Q+II +
Sbjct: 75 GFFKR------EGRPSEDETLIARLIDRPIRPLFPNGFKNEVQVIITVVSVDPQIEPDII 128
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
++ G A G + A G + G +++ + +T ++
Sbjct: 129 SMIGTSAA-------------LAISGIPFSGPLGAARVGYIDGEYVLNPSVAQLATSQLN 175
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
T +G ++ V+ A+ ++ + D+ +IK +
Sbjct: 176 LVVAGT-AGAVLMVESEAQA--LPEEVMLGSVVYGHDQQQVVIKAIAE 220
>gi|255994504|ref|ZP_05427639.1| polyribonucleotide nucleotidyltransferase [Eubacterium saphenum
ATCC 49989]
gi|255993217|gb|EEU03306.1| polyribonucleotide nucleotidyltransferase [Eubacterium saphenum
ATCC 49989]
Length = 696
Score = 149 bits (376), Expect = 3e-34, Method: Composition-based stats.
Identities = 50/242 (20%), Positives = 86/242 (35%), Gaps = 13/242 (5%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56
+R R+ ++R I + A GS L K G+T +L+ AT + +V I
Sbjct: 315 IRPDDRKRTEVRPIWCDTSILPRAHGSGLFKRGETQVLSAATLGGIGDAQVIDGIGVETE 374
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P S G + R+ G RAL V+ I +
Sbjct: 375 KRYMHHYNFPPYSVGEARPIRSPGRREIGHGAL----AERALLPVLPSKEDFPYTIRVVS 430
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
DV+ ++G T A++ G+ +AL D ++ + + + S +
Sbjct: 431 DVLSSNGSTSQASVCGSCMALMDAGVPIKAPVAGIAMGLIERVEEDGNSKMAILSDI--- 487
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
ED D+D T G I +Q + S++ L A++ ++ D
Sbjct: 488 -QGLEDFLGDMDFKVAGTKEG-ITAIQMDIKVHGLSKEVLSQALEQAREGRLHIMGEMLD 545
Query: 237 VI 238
I
Sbjct: 546 EI 547
Score = 97.2 bits (240), Expect = 2e-18, Method: Composition-based stats.
Identities = 42/239 (17%), Positives = 85/239 (35%), Gaps = 31/239 (12%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEK----VPMWIRNTKHGWITAEYGML 66
R + + V + A G +VK+GDT + TAT EK + + + G +
Sbjct: 16 RLLEVEIGKVCEKANGQAMVKYGDTVVNVTATASEKPRADIDFFPLSVDFEERMYAAGKI 75
Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
P R GR ++ R+I R +R + Q++ I D
Sbjct: 76 PGGFIRR------EGRPSEKAILTSRLIDRPIRPLFPKGFYNDVQVVCTAMSIDPDCTPE 129
Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
+ A+ G+ +A G A++ G + G +V+ + + +
Sbjct: 130 SVAMIGSSIA-------------LTISDIPWDGPTASVVIGYIDGNYVVNPTQEQRAVSE 176
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI----KLQKDVISNE 241
+ T I+ V+ A + + A ++I ++ +Q++V ++
Sbjct: 177 LHLVVSGTKD-AIMMVEAGANE--VKESVMLEAILFAHEQIKQIVSFIEDIQREVGKDK 232
>gi|160876518|ref|YP_001555834.1| polynucleotide phosphorylase/polyadenylase [Shewanella baltica
OS195]
gi|304410260|ref|ZP_07391879.1| polyribonucleotide nucleotidyltransferase [Shewanella baltica
OS183]
gi|307302029|ref|ZP_07581787.1| polyribonucleotide nucleotidyltransferase [Shewanella baltica
BA175]
gi|187611316|sp|A3D7K1|PNP_SHEB5 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|189037315|sp|A9KZW6|PNP_SHEB9 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|160862040|gb|ABX50574.1| Polyribonucleotide nucleotidyltransferase [Shewanella baltica
OS195]
gi|304351669|gb|EFM16068.1| polyribonucleotide nucleotidyltransferase [Shewanella baltica
OS183]
gi|306914067|gb|EFN44488.1| polyribonucleotide nucleotidyltransferase [Shewanella baltica
BA175]
gi|315268712|gb|ADT95565.1| polyribonucleotide nucleotidyltransferase [Shewanella baltica
OS678]
Length = 700
Score = 149 bits (376), Expect = 3e-34, Method: Composition-based stats.
Identities = 42/240 (17%), Positives = 88/240 (36%), Gaps = 10/240 (4%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R+ GR+ + +R +S+ V GS L G+T L T TL + ++ G T
Sbjct: 314 RIDGREPDMIRALSVLAGVLPRTHGSALFTRGETQALVTCTLGTERDAQKIDSIMGERTN 373
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
+ + V + G R ++ R + +V+ +A + + ++ ++
Sbjct: 374 RFMLHYNFPPYSVGETGMVGSPKRREIGHGKLAWRGINAVMPSAAEFPYSVRVVSEITES 433
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
+G + A++ G +AL D ++ + V +G + + E
Sbjct: 434 NGSSSMASVCGTSLALMDAGVPIKTSVAGIAMGLVKEGDDFVVLSD---------ILGDE 484
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
D D+D T G I +Q + +++ L A ++ + I +
Sbjct: 485 DHLGDMDFKVAGTRDG-ITALQMDIKIEGITKEIMDIALQQAYGARVHILNVMDQAIGSH 543
Score = 94.1 bits (232), Expect = 2e-17, Method: Composition-based stats.
Identities = 37/228 (16%), Positives = 76/228 (33%), Gaps = 27/228 (11%)
Query: 14 ISLTRRV-SKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----HGWITAEYGMLPR 68
++L V ++ A+ + L GDT +L T +++ + T G +P
Sbjct: 15 VTLETGVIARQADAAVLASMGDTTVLVTVVGKKEADAGRDFFPLTVNYQEKTYAAGKIPG 74
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
R GR I R+I R +R + Q+II +
Sbjct: 75 GFFKR------EGRPSEDETLIARLIDRPIRPLFPNGFKNEVQVIITVVSVDPQIEPDII 128
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
++ G A G + A G + G +++ + +T ++
Sbjct: 129 SMIGTSAA-------------LAISGIPFSGPLGAARVGYIDGEYVLNPSVAQLATSQLN 175
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
T +G ++ V+ A+ ++ + D+ +IK +
Sbjct: 176 LVVAGT-AGAVLMVESEAQA--LPEEVMLGSVVYGHDQQQVVIKAIAE 220
>gi|298694566|gb|ADI97788.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus ED133]
Length = 698
Score = 149 bits (376), Expect = 3e-34, Method: Composition-based stats.
Identities = 44/244 (18%), Positives = 88/244 (36%), Gaps = 18/244 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56
+R GR+ +++R + + GS L G T L+ T + ++ + +
Sbjct: 318 IRPDGRKPDEIRPLDSEVGILPRTHGSGLFTRGQTQALSVLTLGALGDYQLIDGLGPEEE 377
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y S G A R+ G RAL+ ++ +A I I
Sbjct: 378 KRFMHHYNFPNFSVGETGPVRAPGRREIGHGALG----ERALKYIIPDTADFPYTIRIVS 433
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V++++G + A+I G+ +AL D ++ + V + + D
Sbjct: 434 EVLESNGSSSQASICGSTLALMDAGVPIKAPVAGIAMGLVTRED---------SYTILTD 484
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED+ D+D T G I +Q + +++ L A+ +++
Sbjct: 485 IQGMEDALGDMDFKVAGTKEG-ITAIQMDIKIDGLTREIIEEALEQARRGRLEIMNHMLQ 543
Query: 237 VISN 240
I
Sbjct: 544 TIDQ 547
Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats.
Identities = 42/231 (18%), Positives = 84/231 (36%), Gaps = 26/231 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKV---PMWIRNTKHGWITAEYGMLP 67
R +++ ++K A G+ LV++GDT +L+TAT ++ + + G +P
Sbjct: 15 RSLTIETGQLAKQANGAVLVRYGDTVVLSTATASKEPRDGDFFPLTVNYEEKMYAAGKIP 74
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R GR G + R+I R +R + QI+ D +
Sbjct: 75 GGFKKR------EGRPGDDATLTARLIDRPIRPLFPKGYKHDVQIMNMVLSADPDCSPQM 128
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
AA+ G+ +A +G +A ++ G + G I++ E +
Sbjct: 129 AAMIGSSMA-------------LSVSDIPFQGPIAGVNVGYIDGKYIINPTVEEKEVSRL 175
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
D + V+ A ++ + + I L+ Q+ ++
Sbjct: 176 DLEVAGHKD-AVNMVEAGASE--ITEQEMLEAIFFGHEEIQRLVDFQQQIV 223
>gi|269940765|emb|CBI49147.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus TW20]
Length = 698
Score = 149 bits (376), Expect = 3e-34, Method: Composition-based stats.
Identities = 44/244 (18%), Positives = 88/244 (36%), Gaps = 18/244 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56
+R GR+ +++R + + GS L G T L+ T + ++ + +
Sbjct: 318 IRPDGRKPDEIRPLDSEVGILPRTHGSGLFTRGQTQALSVLTLGALGDYQLIDGLGPEEE 377
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y S G A R+ G RAL+ ++ +A I I
Sbjct: 378 KRFMHHYNFPNFSVGETGPVRAPGRREIGHGALG----ERALKYIIPDTADFPYTIRIVS 433
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V++++G + A+I G+ +AL D ++ + V + + D
Sbjct: 434 EVLESNGSSSQASICGSTLALMDAGVPIKAPVAGIAMGLVTRED---------SYTILTD 484
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED+ D+D T G I +Q + +++ L A+ +++
Sbjct: 485 IQGMEDALGDMDFKVAGTKEG-ITAIQMDIKIDGLTREIIEEALEQARRGRLEIMNHMLQ 543
Query: 237 VISN 240
I
Sbjct: 544 TIDQ 547
Score = 111 bits (278), Expect = 7e-23, Method: Composition-based stats.
Identities = 43/231 (18%), Positives = 84/231 (36%), Gaps = 26/231 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKV---PMWIRNTKHGWITAEYGMLP 67
R +++ ++K A G+ LV++GDT +L+TAT ++ + + G +P
Sbjct: 15 RSLTIETGQLAKQANGAVLVRYGDTVVLSTATASKEPRDGDFFPLTVNYEEKMYAAGKIP 74
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R GR G + R+I R +R + QI+ D +
Sbjct: 75 GGFKKR------EGRPGDDATLTARLIDRPIRPLFPKGYKHDVQIMNMVLSADPDCSPQM 128
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
AA+ G+ +A +G +A ++ G + G I++ E +
Sbjct: 129 AAMIGSSMA-------------LSVSDIPFQGPIAGVNVGYIDGKYIINPTVEEKEVSRL 175
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
D I V+ A ++ + + I L+ Q+ ++
Sbjct: 176 DLEVAGHKD-AINMVEAGASE--ITEQEMLEAIFFGHEEIQRLVDFQQQIV 223
>gi|237738330|ref|ZP_04568811.1| polyribonucleotide nucleotidyltransferase [Fusobacterium mortiferum
ATCC 9817]
gi|229420210|gb|EEO35257.1| polyribonucleotide nucleotidyltransferase [Fusobacterium mortiferum
ATCC 9817]
Length = 699
Score = 149 bits (376), Expect = 3e-34, Method: Composition-based stats.
Identities = 41/241 (17%), Positives = 90/241 (37%), Gaps = 18/241 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR+ ++R + GS + G+T + TL +E++ + +
Sbjct: 324 RVDGRKTTEIRPLFAEVNCLPIPHGSAMFTRGETQAVVITTLGTKEDEQLVDDLEKEYYK 383
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + + R+ G RAL+ V+ I + +
Sbjct: 384 KFYLHYNFPPYSVGETGRMGSPGRRELGHGSL----AERALKYVIPSEEEFPYTIRVVSE 439
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A+I G ++L +++ + + +G + ++
Sbjct: 440 ITESNGSSSQASICGGSLSLMAAGVPIKEHVAGIAMGLIKEGDEFTVLTDIM-------- 491
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T +G I +Q + +++ L A D ++++L +
Sbjct: 492 -GLEDHLGDMDFKVAGTKNG-ITALQMDIKITGITEEIMRIALKQALDARNEILELMNNT 549
Query: 238 I 238
I
Sbjct: 550 I 550
Score = 98.8 bits (244), Expect = 6e-19, Method: Composition-based stats.
Identities = 39/236 (16%), Positives = 78/236 (33%), Gaps = 28/236 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKV----PMWIRNTKHGWITAEYGML 66
R ++ + +++ + G+ +V++GDT LL+T ++ + + G
Sbjct: 14 RTLTFSTGKIARQSCGAVMVQYGDTVLLSTVNRSKEPRKENDFFPLTVDYIEKFYAAGKF 73
Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
P R G+ + R+I R +R + I+
Sbjct: 74 PGGFNKR------EGKPSTNATLTARLIDRPIRPMFPDGFNYDVHIVNTVFSFDEKNTPD 127
Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
I G+ +AL G VA + G G I++ E T +
Sbjct: 128 YLGIIGSSMALM-------------LSDLPFLGPVAGVVIGYKNGEFILNPTPEELETSE 174
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNEV 242
++ + T I V+ A ++ + A + I + Q + + EV
Sbjct: 175 LELSVAGTRE-AINMVEAGANE--LDEETMLKAIMFAHENIKKICDFQ-EAFAKEV 226
>gi|217972320|ref|YP_002357071.1| polynucleotide phosphorylase/polyadenylase [Shewanella baltica
OS223]
gi|254782734|sp|B8E6N7|PNP_SHEB2 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|217497455|gb|ACK45648.1| Polyribonucleotide nucleotidyltransferase [Shewanella baltica
OS223]
Length = 699
Score = 149 bits (376), Expect = 3e-34, Method: Composition-based stats.
Identities = 42/240 (17%), Positives = 88/240 (36%), Gaps = 10/240 (4%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R+ GR+ + +R +S+ V GS L G+T L T TL + ++ G T
Sbjct: 314 RIDGREPDMIRALSVLAGVLPRTHGSALFTRGETQALVTCTLGTERDAQKIDSIMGERTN 373
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
+ + V + G R ++ R + +V+ +A + + ++ ++
Sbjct: 374 RFMLHYNFPPYSVGETGMVGSPKRREIGHGKLAWRGINAVMPSAAEFPYSVRVVSEITES 433
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
+G + A++ G +AL D ++ + V +G + + E
Sbjct: 434 NGSSSMASVCGTSLALMDAGVPIKTSVAGIAMGLVKEGDDFVVLSD---------ILGDE 484
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
D D+D T G I +Q + +++ L A ++ + I +
Sbjct: 485 DHLGDMDFKVAGTRDG-ITALQMDIKIEGITKEIMDIALQQAYGARVHILNVMDQAIGSH 543
Score = 94.1 bits (232), Expect = 2e-17, Method: Composition-based stats.
Identities = 37/228 (16%), Positives = 76/228 (33%), Gaps = 27/228 (11%)
Query: 14 ISLTRRV-SKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----HGWITAEYGMLPR 68
++L V ++ A+ + L GDT +L T +++ + T G +P
Sbjct: 15 VTLETGVIARQADAAVLASMGDTTVLVTVVGKKEADAGRDFFPLTVNYQEKTYAAGKIPG 74
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
R GR I R+I R +R + Q+II +
Sbjct: 75 GFFKR------EGRPSEDETLIARLIDRPIRPLFPNGFKNEVQVIITVVSVDPQIEPDII 128
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
++ G A G + A G + G +++ + +T ++
Sbjct: 129 SMIGTSAA-------------LAISGIPFSGPLGAARVGYIDGEYVLNPSVAQLATSQLN 175
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
T +G ++ V+ A+ ++ + D+ +IK +
Sbjct: 176 LVVAGT-AGAVLMVESEAQA--LPEEVMLGSVVYGHDQQQVVIKAIAE 220
>gi|21282886|ref|NP_645974.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus
subsp. aureus MW2]
gi|49486113|ref|YP_043334.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus
subsp. aureus MSSA476]
gi|253731893|ref|ZP_04866058.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus
subsp. aureus USA300_TCH959]
gi|297208080|ref|ZP_06924511.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus ATCC 51811]
gi|300912161|ref|ZP_07129604.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus TCH70]
gi|81649409|sp|Q6G9T9|PNP_STAAS RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|81762564|sp|Q8NWY9|PNP_STAAW RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|21204325|dbj|BAB95022.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus MW2]
gi|49244556|emb|CAG42985.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus MSSA476]
gi|253724303|gb|EES93032.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus
subsp. aureus USA300_TCH959]
gi|296887323|gb|EFH26225.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus ATCC 51811]
gi|300886407|gb|EFK81609.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus TCH70]
gi|329733632|gb|EGG69960.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus 21193]
Length = 698
Score = 149 bits (376), Expect = 3e-34, Method: Composition-based stats.
Identities = 44/244 (18%), Positives = 88/244 (36%), Gaps = 18/244 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56
+R GR+ +++R + + GS L G T L+ T + ++ + +
Sbjct: 318 IRPDGRKPDEIRPLDSEVGILPRTHGSGLFTRGQTQALSVLTLGALGDYQLIDGLGPEEE 377
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y S G A R+ G RAL+ ++ +A I I
Sbjct: 378 KRFMHHYNFPNFSVGETGPVRAPGRREIGHGALG----ERALKYIIPDTADFPYTIRIVS 433
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V++++G + A+I G+ +AL D ++ + V + + D
Sbjct: 434 EVLESNGSSSQASICGSTLALMDAGVPIKAPVAGIAMGLVTRED---------SYTILTD 484
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED+ D+D T G I +Q + +++ L A+ +++
Sbjct: 485 IQGMEDALGDMDFKVAGTKEG-ITAIQMDIKIDGLTREIIEEALEQARRGRLEIMNHMLQ 543
Query: 237 VISN 240
I
Sbjct: 544 TIDQ 547
Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats.
Identities = 42/231 (18%), Positives = 84/231 (36%), Gaps = 26/231 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKV---PMWIRNTKHGWITAEYGMLP 67
R +++ ++K A G+ LV++GDT +L+TAT ++ + + G +P
Sbjct: 15 RSLTIETGQLAKQANGAVLVRYGDTVVLSTATASKEPRDGDFFPLTVNYEEKMYAAGKIP 74
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R GR G + R+I R +R + QI+ D +
Sbjct: 75 GGFKKR------EGRPGDDATLTARLIDRPIRPLFPKGYKHDVQIMNMVLSADPDCSPQM 128
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
AA+ G+ +A +G +A ++ G + G I++ E +
Sbjct: 129 AAMIGSSMA-------------LSVSDIPFQGPIAGVNVGYIDGKYIINPTVEEKEVSRL 175
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
D + V+ A ++ + + I L+ Q+ ++
Sbjct: 176 DLEVAGHKD-AVNMVEAGASE--ITEQEMLEAIFFGHEEIQRLVDFQQQIV 223
>gi|185535745|gb|ACC77873.1| polyribonucleotide nucleotidyltransferase [Staphylococcus xylosus]
Length = 697
Score = 149 bits (376), Expect = 3e-34, Method: Composition-based stats.
Identities = 45/242 (18%), Positives = 86/242 (35%), Gaps = 18/242 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
+R GR+ +++R + V A GS L G T L+ TL E ++ + +
Sbjct: 318 IRPDGRKTDEIRPLESEVGVLPRAHGSGLFTRGQTQALSVLTLGSMSEYQILDGLGEEEQ 377
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y S G + R+ G RAL ++ + I
Sbjct: 378 KRFMHHYNFPNYSVGETGPVRSPGRREIGHGALG----ERALSHIIPDVKDFPYTVRIVS 433
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V++++G + A+I G+ +AL D ++ + V + + D
Sbjct: 434 EVLESNGSSSQASICGSTLALMDAGVPIKAPVAGIAMGLVTRDD---------SYTILTD 484
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED+ D+D T G I +Q + +++ L A+ ++
Sbjct: 485 IQGMEDALGDMDFKVAGTSEG-ITAIQMDIKIDGLTKEIIKEALEQARVGRLAILDHMLQ 543
Query: 237 VI 238
I
Sbjct: 544 TI 545
Score = 106 bits (265), Expect = 2e-21, Method: Composition-based stats.
Identities = 39/231 (16%), Positives = 81/231 (35%), Gaps = 26/231 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKV---PMWIRNTKHGWITAEYGMLP 67
R +++ ++K A G+ LV++GDT +L+TA ++ + + G +P
Sbjct: 15 RSLTIETGQLAKQANGAVLVRYGDTVVLSTAVASKEPRDGDFFPLMVNYEEKMYAAGKIP 74
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R GR + R+I R +R + QI+ D
Sbjct: 75 GGFKKR------EGRPSDEATLTARLIDRPIRPLFPKGYKYDVQIMNTVLSADPDCSPEM 128
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
AA+ G+ +A +G +A ++ G + G I++ + +
Sbjct: 129 AAMIGSSMA-------------LSVSDIPFQGPIAGVNVGYIDGEYIINPTVAQKEVSRL 175
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
D + V+ A ++ + I L+ Q++++
Sbjct: 176 DLEVAGHKD-AVNMVEAGASE--ITESEMLEGIFFGHSEIQRLVNFQQEIV 223
>gi|307278201|ref|ZP_07559283.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis
TX0860]
gi|306505190|gb|EFM74378.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis
TX0860]
Length = 694
Score = 149 bits (376), Expect = 3e-34, Method: Composition-based stats.
Identities = 44/243 (18%), Positives = 86/243 (35%), Gaps = 18/243 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56
+R GR+ +++R +S + GS L G T L+ T E ++ +
Sbjct: 308 IRPDGRKLDEIRHLSSEVSILPRVHGSGLFTRGQTQALSVCTLAPLGEHQIIDGLGVQDS 367
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y S G+ + + R+ G RAL ++ I +
Sbjct: 368 KRFIHHYNFPQFSVGSTGRAGSPGRREIGHGALG----ERALAQIIPSEEDFPYTIRLVA 423
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V++++G + A+I +AL D ++ + V G + D
Sbjct: 424 EVLESNGSSSQASICAGTLALMDAGVPIKAPVAGIAMGLVSDGE---------NYTILTD 474
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T G I +Q + ++ L+ AK ++++
Sbjct: 475 IQGLEDHLGDMDFKVAGTKDG-ITALQMDIKIQGITEQILTEALDQAKKARMEILEELTT 533
Query: 237 VIS 239
I+
Sbjct: 534 TIA 536
Score = 106 bits (264), Expect = 3e-21, Method: Composition-based stats.
Identities = 47/240 (19%), Positives = 88/240 (36%), Gaps = 33/240 (13%)
Query: 5 GRQENQMR--EISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEK---VPMWIRNTKHGWI 59
GR + R IS + A G+ LV++GDT +L+ A ++ V + +
Sbjct: 2 GRPPTRSRNRPIS------QKANGAVLVRYGDTVVLSAAVASKEAKDVDFFPLTVNYEEK 55
Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119
G +P R GR R+ R+I R +R + QI +
Sbjct: 56 MYAVGKIPGGFIKR------EGRPSERATLTARLIDRPIRPMFSEGFRNEVQITNIVMSV 109
Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179
+ D AA+ G+ +A G +A + G + G +++
Sbjct: 110 EQDCTPEMAAMFGSSLA-------------LAISDIPFDGPIAGVDVGRINGEYVLNPTV 156
Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
+ D++ T I V+ A+ S++ L D I +L+ Q+++++
Sbjct: 157 EQAEQTDIELTVAGTKE-AINMVESGAKE--VSEEDMLGALLFGFDAIKELVAFQEEIVA 213
>gi|255974311|ref|ZP_05424897.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis
T2]
gi|255967183|gb|EET97805.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis
T2]
Length = 704
Score = 149 bits (376), Expect = 3e-34, Method: Composition-based stats.
Identities = 44/243 (18%), Positives = 86/243 (35%), Gaps = 18/243 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56
+R GR+ +++R +S + GS L G T L+ T E ++ +
Sbjct: 318 IRPDGRKLDEIRHLSSEVSILPRVHGSGLFTRGQTQALSVCTLAPLGEHQIIDGLGVQDS 377
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y S G+ + + R+ G RAL ++ I +
Sbjct: 378 KRFIHHYNFPQFSVGSTGRAGSPGRREIGHGALG----ERALAQIIPSEEDFPYTIRLVA 433
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V++++G + A+I +AL D ++ + V G + D
Sbjct: 434 EVLESNGSSSQASICAGTLALMDAGVPIKAPVAGIAMGLVSDGE---------NYTILTD 484
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T G I +Q + ++ L+ AK ++++
Sbjct: 485 IQGLEDHLGDMDFKVAGTKDG-ITALQMDIKIQGITEQILTEALDQAKKARMEILEELTT 543
Query: 237 VIS 239
I+
Sbjct: 544 TIA 546
Score = 117 bits (292), Expect = 1e-24, Method: Composition-based stats.
Identities = 44/232 (18%), Positives = 87/232 (37%), Gaps = 26/232 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEK---VPMWIRNTKHGWITAEYGMLP 67
R + + ++K A G+ LV++GDT +L+ A ++ V + + G +P
Sbjct: 14 RPLEVEIGQLAKQANGAVLVRYGDTVVLSAAVASKEAKDVDFFPLTVNYEEKMYAVGKIP 73
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R GR R+ R+I R +R + QI ++ D
Sbjct: 74 GGFIKR------EGRPSERATLTARLIDRPIRPMFSEGFRNEVQITNIVMSVEQDCTPEM 127
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
AA+ G+ +A G +A + G + G +++ + D+
Sbjct: 128 AAMFGSSLA-------------LAISDIPFDGPIAGVDVGRINGEYVLNPTVEQAEQTDI 174
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
+ T I V+ A+ S++ L D I +L+ Q+++++
Sbjct: 175 ELTVAGTKE-AINMVESGAKE--VSEEDMLGALLFGFDAIKELVAFQEEIVA 223
>gi|152976173|ref|YP_001375690.1| polynucleotide phosphorylase/polyadenylase [Bacillus cereus subsp.
cytotoxis NVH 391-98]
gi|187470935|sp|A7GRD7|PNP_BACCN RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|152024925|gb|ABS22695.1| Polyribonucleotide nucleotidyltransferase [Bacillus cytotoxicus NVH
391-98]
Length = 710
Score = 149 bits (376), Expect = 3e-34, Method: Composition-based stats.
Identities = 44/244 (18%), Positives = 85/244 (34%), Gaps = 18/244 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56
+R GR+ +++R ++ + GS L G T L+ T + ++ + +
Sbjct: 315 IRPDGRKSDEIRPLASEVGILPRTHGSGLFTRGQTQALSICTLGALGDVQILDGLGVEES 374
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y S G R+ G RAL V+ + +
Sbjct: 375 KRFMHHYNFPSFSVGETRPMRGPGRREIGHGALG----ERALEPVIPSEKDFPYTVRLVS 430
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V++++G T A+I G+ +A+ D ++ + V G + D
Sbjct: 431 EVLESNGSTSQASICGSTLAMMDAGVPLKAPVAGIAMGLVKSGE---------HYTILTD 481
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T G + +Q + S++ L AK ++
Sbjct: 482 IQGMEDHLGDMDFKVAGTAKG-VTALQMDIKIDGLSREILEEALQQAKVGRMHILDHMLS 540
Query: 237 VISN 240
VI+
Sbjct: 541 VIAE 544
Score = 114 bits (285), Expect = 1e-23, Method: Composition-based stats.
Identities = 43/231 (18%), Positives = 90/231 (38%), Gaps = 26/231 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEK---VPMWIRNTKHGWITAEYGMLP 67
R++++ ++K A G+ LV++GDT +L+TAT ++ V + + G +P
Sbjct: 15 RQLTIETGQLAKQANGAVLVRYGDTAVLSTATASKEAKDVDFFPLTVNYEERLYAVGKIP 74
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R GR ++ R+I R +R + Q++ + D +
Sbjct: 75 GGFIKR------EGRPSEKAILASRLIDRPIRPLFADGFRNEVQVVSIVMSVDQDCSSEM 128
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
AA+ G+ +A +G +A + G + G I++ + D+
Sbjct: 129 AAMLGSSLA-------------LSISDIPFEGPIAGATVGRIDGEFIINPTVEQQEKSDI 175
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
T I V+ A++ ++ + + I LI Q++++
Sbjct: 176 HLVVAGTKD-AINMVEAGADQVP--EETMLEAIMFGHEEIKRLIAFQEEIV 223
>gi|111115640|ref|YP_710258.1| polynucleotide phosphorylase/polyadenylase [Borrelia afzelii PKo]
gi|123145624|sp|Q0SM46|PNP_BORAP RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|110890914|gb|ABH02082.1| polyribonucleotide nucleotidyltransferase [Borrelia afzelii PKo]
Length = 722
Score = 149 bits (376), Expect = 3e-34, Method: Composition-based stats.
Identities = 46/244 (18%), Positives = 87/244 (35%), Gaps = 19/244 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
+R GR N++R+I + GS L G+T L TL +E++ I K
Sbjct: 315 IRTDGRTPNEIRDILAEVDILSRTHGSSLFTRGETQALAVTTLGTSIDEQIMDDIDGDKR 374
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P S G + R+ G RAL S++ I +
Sbjct: 375 LNFMLHYNFPPFSVGETGRLMTGR-REIGHGHL----AQRALESMIPGKNDFPYTIRVVS 429
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
++++++G + A + ++L ++ + + +G +
Sbjct: 430 EILESNGSSSMATVCAGSMSLMSAGVPVKRQVAGIAMGLISEGDKYVVLSD--------- 480
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T++G I Q + ++ L A+ ++ +
Sbjct: 481 ILGEEDHLGDMDFKVAGTENG-ITGFQMDIKIENVTKQLMRDALEQARVGRIHILSIMNS 539
Query: 237 VISN 240
VISN
Sbjct: 540 VISN 543
Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats.
Identities = 46/239 (19%), Positives = 80/239 (33%), Gaps = 32/239 (13%)
Query: 5 GRQENQMREISLTRRV-SKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----HGWI 59
GR E+ +K A GS L +G + +L T V + +
Sbjct: 10 GRD-----ELVFETGFMAKQANGSVLATYGGSSVLATVCCSNNVREDLDFVPLSVEYNEK 64
Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119
G +P R G+ + + R+I R +R + D Q+I
Sbjct: 65 YYAAGKIPGGFIKR------EGKPKDKEILVSRLIDRPMRPLFDKRFGREIQVIPTTLAT 118
Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179
+ A+ A+ G +AA+ L G IV+ +
Sbjct: 119 DQLNPPDIVGMNAAFTAVF-------------LSDIPFNGPIAAVRMVYLNGKFIVNPSF 165
Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
E D+D + +G I V+G A S+D + ++ A + I + QK+ +
Sbjct: 166 EEIHDSDLDIVVAGSLNG-ITMVEGGANE--VSEDILLSAIDSAHEYIKQICNAQKEFL 221
>gi|126175434|ref|YP_001051583.1| polynucleotide phosphorylase/polyadenylase [Shewanella baltica
OS155]
gi|125998639|gb|ABN62714.1| Polyribonucleotide nucleotidyltransferase [Shewanella baltica
OS155]
Length = 703
Score = 149 bits (376), Expect = 3e-34, Method: Composition-based stats.
Identities = 42/240 (17%), Positives = 88/240 (36%), Gaps = 10/240 (4%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R+ GR+ + +R +S+ V GS L G+T L T TL + ++ G T
Sbjct: 317 RIDGREPDMIRALSVLAGVLPRTHGSALFTRGETQALVTCTLGTERDAQKIDSIMGERTN 376
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
+ + V + G R ++ R + +V+ +A + + ++ ++
Sbjct: 377 RFMLHYNFPPYSVGETGMVGSPKRREIGHGKLAWRGINAVMPSAAEFPYSVRVVSEITES 436
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
+G + A++ G +AL D ++ + V +G + + E
Sbjct: 437 NGSSSMASVCGTSLALMDAGVPIKTSVAGIAMGLVKEGDDFVVLSD---------ILGDE 487
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
D D+D T G I +Q + +++ L A ++ + I +
Sbjct: 488 DHLGDMDFKVAGTRDG-ITALQMDIKIEGITKEIMDIALQQAYGARVHILNVMDQAIGSH 546
Score = 94.1 bits (232), Expect = 2e-17, Method: Composition-based stats.
Identities = 37/228 (16%), Positives = 76/228 (33%), Gaps = 27/228 (11%)
Query: 14 ISLTRRV-SKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----HGWITAEYGMLPR 68
++L V ++ A+ + L GDT +L T +++ + T G +P
Sbjct: 18 VTLETGVIARQADAAVLASMGDTTVLVTVVGKKEADAGRDFFPLTVNYQEKTYAAGKIPG 77
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
R GR I R+I R +R + Q+II +
Sbjct: 78 GFFKR------EGRPSEDETLIARLIDRPIRPLFPNGFKNEVQVIITVVSVDPQIEPDII 131
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
++ G A G + A G + G +++ + +T ++
Sbjct: 132 SMIGTSAA-------------LAISGIPFSGPLGAARVGYIDGEYVLNPSVAQLATSQLN 178
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
T +G ++ V+ A+ ++ + D+ +IK +
Sbjct: 179 LVVAGT-AGAVLMVESEAQA--LPEEVMLGSVVYGHDQQQVVIKAIAE 223
>gi|293393150|ref|ZP_06637465.1| polyribonucleotide nucleotidyltransferase [Serratia odorifera DSM
4582]
gi|291424296|gb|EFE97510.1| polyribonucleotide nucleotidyltransferase [Serratia odorifera DSM
4582]
Length = 706
Score = 149 bits (376), Expect = 3e-34, Method: Composition-based stats.
Identities = 44/242 (18%), Positives = 90/242 (37%), Gaps = 18/242 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR+++ +R + + V GS L G+T L TATL + + + K
Sbjct: 315 RIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQNLDELMGEKTD 374
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + R+ G + R + +++ + + +
Sbjct: 375 SFLFHYNFPPYSVGETGMVGSPKRREIGHGRL----AKRGVLAMMPKPEDFPYTVRVVSE 430
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ GA +AL D ++ + V + + +
Sbjct: 431 ITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEQDNFVVLSD---------I 481
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D + G I +Q + +++ LN AK ++ + +
Sbjct: 482 LGDEDHLGDMDFKVAGSRDG-ITALQMDIKIEGITREIMQVALNQAKGARLHILGVMEQA 540
Query: 238 IS 239
IS
Sbjct: 541 IS 542
Score = 94.5 bits (233), Expect = 1e-17, Method: Composition-based stats.
Identities = 36/232 (15%), Positives = 77/232 (33%), Gaps = 27/232 (11%)
Query: 14 ISLTRRV-SKYAEGSCLVKFGDTHLLTTATLEEKVPM----WIRNTKHGWITAEYGMLPR 68
+++ + ++ A + +V DT + T ++K + + T G +P
Sbjct: 16 VTIETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQSFFPLTVNYQERTYAAGRIPG 75
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
S R GR R+I R +R + + L Q+I +
Sbjct: 76 SFFRR------EGRPSEGETLTSRLIDRPIRPLFPDNFLNEVQVIATVVSVNPQVNPDIV 129
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+ GA A G + A G + +++ E +D
Sbjct: 130 AMIGASAA-------------LSLSGIPFSGPIGAARVGYINDQYVLNPTTDELKESRLD 176
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
T+ G ++ V+ +E S+D + ++ +I+ +++
Sbjct: 177 LVVAGTE-GAVLMVE--SEADVLSEDQMLGAVVFGHEQQQVVIENINSLVAE 225
>gi|153806044|ref|ZP_01958712.1| hypothetical protein BACCAC_00295 [Bacteroides caccae ATCC 43185]
gi|149130721|gb|EDM21927.1| hypothetical protein BACCAC_00295 [Bacteroides caccae ATCC 43185]
Length = 708
Score = 149 bits (376), Expect = 3e-34, Method: Composition-based stats.
Identities = 48/243 (19%), Positives = 87/243 (35%), Gaps = 18/243 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHG 57
RL GR+ ++R I GS + G+T LT+ T L+EK+ +
Sbjct: 319 RLDGRKTTEIRPIWCEVGYLPGPHGSAIFTRGETQSLTSVTLGTKLDEKIIDNVLEHGKE 378
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P STG + V R+ G RAL+ + + + +
Sbjct: 379 RFLLHYNFPPFSTGEAKAQRGVGRREIGHGHL----AWRALKGQIPADY--PYVVRVVSE 432
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+++++G + A + +AL D ++ + + + G + D+
Sbjct: 433 ILESNGSSSMATVCAGTLALMDAGVKIKKPVSGIAMGLIKN-------AGEDKYAVLSDI 485
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T G I Q + S + LN AK+ ++ +
Sbjct: 486 LGDEDHLGDMDFKVTGTRDG-ITATQMDIKVDGLSYEILERALNQAKEGRMHILDKIAET 544
Query: 238 ISN 240
I+
Sbjct: 545 IAE 547
Score = 106 bits (265), Expect = 2e-21, Method: Composition-based stats.
Identities = 39/241 (16%), Positives = 76/241 (31%), Gaps = 26/241 (10%)
Query: 3 LSGRQENQMREISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
GR I+L ++K A+GS +++ G+T LL T +
Sbjct: 12 PDGRT------ITLETGKLAKQADGSVMLRMGNTMLLATVCAAKDAVPGTDFMPLQVEYK 65
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
E GR R++ RALR + +
Sbjct: 66 EKFAAFGRFP--GGFTKREGRASDYEILTCRLVDRALRPLFPDNYHAEVY---------- 113
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
+ V + D L + + G ++ + + G +++ + +
Sbjct: 114 ---VNIILFSADGVDMPDALAGLAASAALAVSDIPFNGPISEVRVARIDGQFVINPTFEQ 170
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
D+D T +I+ V+ E S+ + +A + I K Q + ++ E
Sbjct: 171 LEKADMDLMVAATYE-NIMMVE--GEMHEVSEAELLEAMKVAHEAIKVHCKAQME-LTEE 226
Query: 242 V 242
V
Sbjct: 227 V 227
>gi|192288867|ref|YP_001989472.1| polynucleotide phosphorylase/polyadenylase [Rhodopseudomonas
palustris TIE-1]
gi|226702683|sp|B3QAB0|PNP_RHOPT RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|192282616|gb|ACE98996.1| Polyribonucleotide nucleotidyltransferase [Rhodopseudomonas
palustris TIE-1]
Length = 722
Score = 149 bits (376), Expect = 3e-34, Method: Composition-based stats.
Identities = 49/241 (20%), Positives = 88/241 (36%), Gaps = 18/241 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +R I V GS L G+T L TL +E+ + T
Sbjct: 316 RIDGRDSKTVRNILAQVGVLPRTHGSALFTRGETQALVVTTLGTGEDEQYVDSLSGTYKE 375
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + R+ G + RA+ V+ I + +
Sbjct: 376 TFLLHYNFPPYSVGETGRLGGTKRREIGHGKL----AWRAIHPVLPPHHEFPYTIRVVSE 431
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ GA +AL D ++ + + +L+G A+ +
Sbjct: 432 ITESNGSSSMASVCGASLALMDAGVPLKRPTAGIAMGLILEGERFAVLSD---------I 482
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T+ G I +Q + A +++ L AKD ++
Sbjct: 483 LGDEDHLGDMDFKVAGTEQG-ITSLQMDIKIAGITEEIMKVALGQAKDGRIHILGEMSKA 541
Query: 238 I 238
+
Sbjct: 542 L 542
Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats.
Identities = 36/235 (15%), Positives = 75/235 (31%), Gaps = 28/235 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKHGWITAEYGML 66
R + L V++ A+G+ + +G+T +L T E V + G +
Sbjct: 14 RPLKLETGKVARQADGAVVATYGETVVLATVVAAKSPREGVDFLPLTVDYQEKAYAAGRI 73
Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
P R GR + + R+I R +R + Q+I+ +
Sbjct: 74 PGGYFKR------EGRPTEKETLVSRLIDRPIRPLFADGWRNETQVIVTVLSHDMENDPD 127
Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
A+ A A KG + A G + +++ E +
Sbjct: 128 VLAMVAASAA-------------LTLSGVPFKGPIGAARVGFINDEYVLNPVLDEMAETQ 174
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
++ T ++ V+ A+ S++ + +I D ++ +
Sbjct: 175 LELVVAGTAD-AVLMVESEAKE--LSEEIMLGAVMFGHRHFQPVIDAIID-LAEK 225
>gi|216263697|ref|ZP_03435692.1| polyribonucleotide nucleotidyltransferase
(Polynucleotidephosphorylase) [Borrelia afzelii ACA-1]
gi|215980541|gb|EEC21362.1| polyribonucleotide nucleotidyltransferase
(Polynucleotidephosphorylase) [Borrelia afzelii ACA-1]
Length = 722
Score = 149 bits (376), Expect = 3e-34, Method: Composition-based stats.
Identities = 46/244 (18%), Positives = 87/244 (35%), Gaps = 19/244 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
+R GR N++R+I + GS L G+T L TL +E++ I K
Sbjct: 315 IRTDGRTPNEIRDILAEVDILSRTHGSSLFTRGETQALAVTTLGTSIDEQIMDDIDGDKR 374
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P S G + R+ G RAL S++ I +
Sbjct: 375 LNFMLHYNFPPFSVGETGRLMTGR-REIGHGHL----AQRALESMIPGKNDFPYTIRVVS 429
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
++++++G + A + ++L ++ + + +G +
Sbjct: 430 EILESNGSSSMATVCAGSMSLMSAGVPVKRQVAGIAMGLISEGDKYVVLSD--------- 480
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T++G I Q + ++ L A+ ++ +
Sbjct: 481 ILGEEDHLGDMDFKVAGTENG-ITGFQMDIKIENVTKQLMRDALEQARVGRIHILSIMNS 539
Query: 237 VISN 240
VISN
Sbjct: 540 VISN 543
Score = 110 bits (275), Expect = 2e-22, Method: Composition-based stats.
Identities = 46/239 (19%), Positives = 80/239 (33%), Gaps = 32/239 (13%)
Query: 5 GRQENQMREISLTRRV-SKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----HGWI 59
GR E+ +K A GS L +G + +L T V + +
Sbjct: 10 GRD-----ELVFETGFMAKQANGSVLATYGGSSVLATVCCSNNVREDLDFVPLSVEYNEK 64
Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119
G +P R G+ + + R+I R +R + D Q+I
Sbjct: 65 YYAAGKIPGGFIKR------EGKPKDKEILVSRLIDRPMRPLFDKRFGREIQVIPTTLAT 118
Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179
+ A+ A+ G +AA+ L G IV+ +
Sbjct: 119 DQLNPPDIVGMNAAFTAVF-------------LSDIPFNGPIAAVRMVYLNGKFIVNPSF 165
Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
E D+D + +G I V+G A S+D + ++ A + I + QK+ +
Sbjct: 166 EEIHDSDLDIVVAGSLNG-ITMVEGGANE--VSEDILLSAIDSAHEYIKQICNAQKEFL 221
>gi|224540971|ref|ZP_03681510.1| hypothetical protein CATMIT_00122 [Catenibacterium mitsuokai DSM
15897]
gi|224526122|gb|EEF95227.1| hypothetical protein CATMIT_00122 [Catenibacterium mitsuokai DSM
15897]
Length = 712
Score = 149 bits (376), Expect = 3e-34, Method: Composition-based stats.
Identities = 45/244 (18%), Positives = 86/244 (35%), Gaps = 18/244 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56
+R GR+ +++R + + GS + G+T +L+ T E + +
Sbjct: 318 VRPDGRKVDEVRPLDAQVDLLPRVHGSAMFTRGETQVLSACTLGALGEVQKIDGLGMEDQ 377
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P G + + R+ G RALR V+ I +
Sbjct: 378 KRFMHHYNFPPYCVGETGRMGSPGRREIGHGALG----ERALRQVIPSETEFPYTIRVVA 433
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V++++G + A+I + +AL + + + V KG + D
Sbjct: 434 EVLESNGSSSQASICASTMALMAAGVPISNPVAGVAMGLVKKGE---------NYTILTD 484
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T +G I +Q + +++ L AK ++
Sbjct: 485 IQGMEDHLGDMDFKVAGTKNG-ICALQMDIKIDGITKEILQEALAQAKVARGQIMDCMMS 543
Query: 237 VISN 240
IS
Sbjct: 544 AISE 547
Score = 108 bits (270), Expect = 6e-22, Method: Composition-based stats.
Identities = 45/231 (19%), Positives = 86/231 (37%), Gaps = 26/231 (11%)
Query: 13 EISLTRR-VSKYAEGSCLVKFGDTHLLTTATL---EEKVPMWIRNTKHGWITAEYGMLPR 68
+I + ++K A GSCLV++ DT +L+TA + V + + G +P
Sbjct: 14 KIQVEVGEMAKQANGSCLVRYDDTVVLSTACAGKEPKDVDFFPLTVTYEEKLYSVGKIPG 73
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
R GR RMI R +R + Q++ + + A
Sbjct: 74 GFLKR------EGRPSEHGTLTARMIDRPIRPLFADGFRNEVQVVNTVLSVDQEATPEMA 127
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+ GA +AL G +A ++ G++ G V+ + + +++
Sbjct: 128 AMLGASIALC-------------ISDIPFNGPIAGVNVGLIDGEFTVNAGPEDMARSEIN 174
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
T I V+ A+ ++ L ++I +LI Q+ ++
Sbjct: 175 LEVAGTKD-AINMVEADAKE--VDEETMLNALMFGHEKIKELIAFQEQIVE 222
>gi|295397816|ref|ZP_06807881.1| polyribonucleotide nucleotidyltransferase [Aerococcus viridans ATCC
11563]
gi|294973951|gb|EFG49713.1| polyribonucleotide nucleotidyltransferase [Aerococcus viridans ATCC
11563]
Length = 702
Score = 149 bits (376), Expect = 3e-34, Method: Composition-based stats.
Identities = 44/242 (18%), Positives = 87/242 (35%), Gaps = 16/242 (6%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
+R GR+ +++R ++ + GS L G T L+ ATL EE+ +
Sbjct: 319 VRPDGRKIDEIRPLASEVGLLPRTHGSGLFTRGQTQALSVATLAPLSEEQRIDGLAGDVT 378
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y S G+ + + R+ G RAL V+ I +
Sbjct: 379 QRFMHHYNFPQYSVGSTGRYGSPGRREIGHGALG----YRALNEVLPSEEDFPYAIRLVA 434
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V++++G + A+I +AL D ++ + ++ + D
Sbjct: 435 EVLESNGSSSQASICAGTLALMDAGVPIKAPVAGIAMGLIMDED-------EENYTVLTD 487
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T++G I +Q + ++ L+ A +++
Sbjct: 488 IQGLEDHLGDMDFKVAGTENG-ITALQMDIKIKGITEQILREALDQAHKARVEILGHLAT 546
Query: 237 VI 238
I
Sbjct: 547 AI 548
Score = 112 bits (280), Expect = 4e-23, Method: Composition-based stats.
Identities = 45/236 (19%), Positives = 82/236 (34%), Gaps = 28/236 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----HGWITAEYGML 66
R +S+ V+K A + LV++GDT +LT ++ + G +
Sbjct: 14 RPLSIEYGQVAKQANAAVLVRYGDTVVLTAVVGAKEAKPGQDFFPLQVNYEEKMYSVGKI 73
Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
P R GR + R+I R +R + D Q+I + D
Sbjct: 74 PGGYIKR------EGRPSEHATLTARLIDRPIRPMFDEGFTNEVQVINTVLSVDPDCSPE 127
Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
AA+ G+ A G +A ++ G + G +++ + + D
Sbjct: 128 MAAMFGSSAA-------------LTISDIPFDGPIAGVNVGRVNGDFVINPTVEQQAQSD 174
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNEV 242
++ + I V+ SA A S+ L I +L Q + I ++
Sbjct: 175 LELIVAGSKD-AINMVESSA--AELSETEMLEALMFGHTSIRELCYFQDE-IREKI 226
>gi|148263963|ref|YP_001230669.1| polynucleotide phosphorylase/polyadenylase [Geobacter
uraniireducens Rf4]
gi|187610269|sp|A5GF91|PNP_GEOUR RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|146397463|gb|ABQ26096.1| Polyribonucleotide nucleotidyltransferase [Geobacter uraniireducens
Rf4]
Length = 696
Score = 149 bits (376), Expect = 3e-34, Method: Composition-based stats.
Identities = 48/242 (19%), Positives = 86/242 (35%), Gaps = 18/242 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +R+I+ + A GS L G+T L ATL +E+ +
Sbjct: 312 RIDGRDTKTIRQITTEVSLLPRAHGSALFTRGETQSLVAATLGTSIDEQRIDSLFGESKK 371
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G R R+ G RAL V+ I I D
Sbjct: 372 RFLLHYNFPPFSVGETSFRLGPGRREIGHGML----AERALARVLPKHDDFPYTIRIVSD 427
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+++++G + A++ G +++ D ++ + + +G AI +
Sbjct: 428 ILESNGSSSMASVCGGSMSMMDAGIPIKAPVAGIAMGLIKEGEDFAILSD---------I 478
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T G + +Q + +++ L A + ++ D
Sbjct: 479 LGDEDHLGDMDFKVAGTAEG-VTALQMDIKIGGVTREIMGIALKQALEGRLHILGRMADT 537
Query: 238 IS 239
I
Sbjct: 538 IK 539
Score = 108 bits (269), Expect = 7e-22, Method: Composition-based stats.
Identities = 46/230 (20%), Positives = 81/230 (35%), Gaps = 27/230 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTKHGWITAEYGML 66
R I++ ++K A G+ +V GDT +L TA T +E + + G +
Sbjct: 12 RTITIETGKMAKQASGAVVVSSGDTMVLVTAVATKTAKEGQDFFPLTVNYQEKAYAGGKI 71
Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
P R R R+I R +R + + L QI+ D
Sbjct: 72 PGGFFKR------EARPSDNETLTCRLIDRPIRPLFPENFLNDTQIMATVVSADKDNDPG 125
Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
++ GA AL +G +A + G + G I + E D
Sbjct: 126 ILSMVGASAALM-------------VSDIPFQGPIAGVKVGRVDGRFIANPTADEMEKSD 172
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
++ + ++ V+GSA A S++ + I L+ Q++
Sbjct: 173 IEIVVAASKD-AVIMVEGSA--AEVSEEDMLEAIFFGHAAIQPLLAAQEE 219
>gi|57242200|ref|ZP_00370139.1| polyribonucleotide nucleotidyltransferase Cj1253 [Campylobacter
upsaliensis RM3195]
gi|57016880|gb|EAL53662.1| polyribonucleotide nucleotidyltransferase Cj1253 [Campylobacter
upsaliensis RM3195]
Length = 717
Score = 149 bits (376), Expect = 3e-34, Method: Composition-based stats.
Identities = 52/252 (20%), Positives = 89/252 (35%), Gaps = 27/252 (10%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWI------RNTK 55
R GR N++R I + + A GSCL G T L ATL + + +N
Sbjct: 339 RADGRALNEVRAIEIETNILPNAHGSCLFTRGQTQALVVATLGGENDAQMVDLLSEKNPI 398
Query: 56 HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115
Y S G +A R+ G + RAL V + +
Sbjct: 399 SERFMVNYNFPGFSVGEASPIKAPGRRELGHGNL----VKRALYPSV--DENYPYVVRLV 452
Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIV 175
++++++G + A + G +AL + VL+G AI ++
Sbjct: 453 SEILESNGSSSMATVCGGSLALRAAGVSSIKLVAGVAMGLVLEGDEYAILTDIM------ 506
Query: 176 DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
ED D+D T G I +Q + ++ L A++ ++ L +
Sbjct: 507 ---GLEDHDGDMDFKVAGTKDG-ITALQMDIKLGGIDENILKNALYQAREARLHILDLME 562
Query: 236 DV-----ISNEV 242
+ I+ EV
Sbjct: 563 EANSQIIINEEV 574
Score = 75.3 bits (183), Expect = 7e-12, Method: Composition-based stats.
Identities = 35/248 (14%), Positives = 74/248 (29%), Gaps = 50/248 (20%)
Query: 20 VSKYAEGSCLVKFGDTHLLTTATLEE---KVPMWIRNTKHGWITAEYGMLPRSTGNRVKR 76
V+K A GS L++ G + +L T E+ + ++ G +P R
Sbjct: 19 VAKQAAGSVLMRVGKSVVLATVAREDKQVEEDFLPLTVQYIEKAYAVGRIPGGYIKR--- 75
Query: 77 EAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVA 136
+ G R+I R+LR + QI++ + + ++ A VA
Sbjct: 76 ---ETKPGDNETLTARIIDRSLRPLFPKGYAYPTQIVVMVLSADDEVDLQVMSLNAASVA 132
Query: 137 LHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDS 196
L+ +K V + + +++ + +D
Sbjct: 133 LY-------------LSGIPIKAPVCGVRIARINDEFVLNPSNSKLKESTLDLYVAGVKD 179
Query: 197 GHIVEVQGSAE---------------------------RATFSQDHFFAMLNLAKDRIAD 229
++ ++ A S+D L++AK I +
Sbjct: 180 -ELLMIEMRALPSESEGEAMVETSFAEALAGTSIYEQVMNELSEDEILQALSVAKKAILN 238
Query: 230 LIKLQKDV 237
++
Sbjct: 239 GSNAYEEA 246
>gi|257867115|ref|ZP_05646768.1| polyribonucleotide nucleotidyltransferase [Enterococcus
casseliflavus EC30]
gi|257877194|ref|ZP_05656847.1| polyribonucleotide nucleotidyltransferase [Enterococcus
casseliflavus EC20]
gi|257801171|gb|EEV30101.1| polyribonucleotide nucleotidyltransferase [Enterococcus
casseliflavus EC30]
gi|257811360|gb|EEV40180.1| polyribonucleotide nucleotidyltransferase [Enterococcus
casseliflavus EC20]
Length = 720
Score = 149 bits (376), Expect = 3e-34, Method: Composition-based stats.
Identities = 44/243 (18%), Positives = 86/243 (35%), Gaps = 18/243 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56
+R GRQ +++R ++ + GS L G T L+ T E ++ + +
Sbjct: 333 IRPDGRQLDEIRPLASEVGLLPRVHGSGLFTRGQTQALSACTLAPLGEHQIIDGLGVEES 392
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y S G+ + + R+ G RAL V+ I +
Sbjct: 393 KRFIHHYNFPQFSVGSTGRAGSPGRREIGHGALG----ERALAQVIPDETDFPYTIRLVA 448
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V++++G + A+I +AL D ++ + V G + D
Sbjct: 449 EVLESNGSSSQASICAGTLALMDAGVPIKAPVAGIAMGLVSDGE---------NYTILTD 499
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T G I +Q + ++ L+ AK +++
Sbjct: 500 IQGLEDHLGDMDFKVAGTKDG-ITALQMDIKIQGITEQILTEALDQAKKARMEILNELTS 558
Query: 237 VIS 239
++
Sbjct: 559 TLA 561
Score = 115 bits (287), Expect = 6e-24, Method: Composition-based stats.
Identities = 42/232 (18%), Positives = 85/232 (36%), Gaps = 26/232 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEK---VPMWIRNTKHGWITAEYGMLP 67
R + + ++K A G+ LV++GDT +L+ A ++ + + G +P
Sbjct: 29 RPLEVEVGQLAKQANGAVLVRYGDTVVLSAAVASKEAKDTDFFPLTINYEEKMYAVGKVP 88
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R GR + R+I R +R + Q+ ++ D
Sbjct: 89 GGFIKR------EGRPSTEATLTARLIDRPIRPMFAEGFRNEVQVTNIVMSVEQDCTPAM 142
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
AA+ G+ +A G +A + G + G +++ + D+
Sbjct: 143 AAMLGSSLA-------------LSISDIPFDGPIAGVDVGRVNGEYVLNPTVEQAEQTDI 189
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
+ T I V+ A+ S++ L D I +L+ Q++V++
Sbjct: 190 ELTVAGTKK-AINMVESGAKE--VSEEDMLGALLFGFDAIKELVAFQEEVVA 238
>gi|148976703|ref|ZP_01813390.1| polynucleotide phosphorylase/polyadenylase [Vibrionales bacterium
SWAT-3]
gi|145964054|gb|EDK29312.1| polynucleotide phosphorylase/polyadenylase [Vibrionales bacterium
SWAT-3]
Length = 706
Score = 149 bits (376), Expect = 3e-34, Method: Composition-based stats.
Identities = 42/242 (17%), Positives = 91/242 (37%), Gaps = 18/242 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR+++ +R + + V GS L G+T + TATL + ++ + +
Sbjct: 316 RIDGREKDMVRALDVRTGVLPRTHGSSLFTRGETQAIVTATLGTQRDAQIIDELTGERKD 375
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P G + R+ G + R + +V+ + + +
Sbjct: 376 NFLLHYNFPPYCVGETGFVGSPKRREIGHGKL----AKRGIAAVMPSVDEFPYTVRVVSE 431
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ G +AL D ++ + V +G + +
Sbjct: 432 ITESNGSSSMASVCGTSLALMDAGVPIKSSVAGIAMGLVKEGDDFVVLSD---------I 482
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T+ G I +Q + +++ LN A+ ++ + +
Sbjct: 483 LGDEDHLGDMDFKVAGTNDG-ITALQMDIKIEGITKEIMQIALNQAQGARKHILSVMDEA 541
Query: 238 IS 239
IS
Sbjct: 542 IS 543
Score = 91.1 bits (224), Expect = 1e-16, Method: Composition-based stats.
Identities = 34/228 (14%), Positives = 74/228 (32%), Gaps = 27/228 (11%)
Query: 14 ISLTRRV-SKYAEGSCLVKFGDTHLLTTATLEEKV----PMWIRNTKHGWITAEYGMLPR 68
++L V ++ A + +V DT + + +++ + + T G +P
Sbjct: 17 VTLETGVIARQATAAVMVTMDDTSVFVSVVGKKEAVQGQDFFPLTVNYQERTYAAGKIPG 76
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
R GR R+I R +R + + Q+I + D
Sbjct: 77 GFFKR------EGRPSEGETLTARLIDRPIRPLFPDAFKNEVQVIATVMSVNPDVQPDMV 130
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
+ G A G + A G + G +++ E T +D
Sbjct: 131 TMIGTSAA-------------LAISGIPFNGPIGAARVGHIDGQLVLNPSNTELETSKLD 177
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
T +G ++ V+ +E +++ + + D+ +I +
Sbjct: 178 LVVSGT-AGAVLMVE--SEADNLTEEEMLSAVVFGHDQQQVVINAINE 222
>gi|29377522|ref|NP_816676.1| polynucleotide phosphorylase/polyadenylase [Enterococcus faecalis
V583]
gi|227554487|ref|ZP_03984534.1| polynucleotide phosphorylase/polyadenylase [Enterococcus faecalis
HH22]
gi|257088180|ref|ZP_05582541.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis
D6]
gi|75541451|sp|Q82ZJ2|PNP_ENTFA RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|29344989|gb|AAO82746.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis
V583]
gi|227176397|gb|EEI57369.1| polynucleotide phosphorylase/polyadenylase [Enterococcus faecalis
HH22]
gi|256996210|gb|EEU83512.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis
D6]
gi|315027681|gb|EFT39613.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis
TX2137]
gi|315573355|gb|EFU85546.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis
TX0309B]
gi|315581213|gb|EFU93404.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis
TX0309A]
Length = 704
Score = 149 bits (376), Expect = 3e-34, Method: Composition-based stats.
Identities = 44/243 (18%), Positives = 86/243 (35%), Gaps = 18/243 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56
+R GR+ +++R +S + GS L G T L+ T E ++ +
Sbjct: 318 IRPDGRKLDEIRHLSSEVSILPRVHGSGLFTRGQTQALSVCTLAPLGEHQIIDGLGVQDS 377
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y S G+ + + R+ G RAL ++ I +
Sbjct: 378 KRFIHHYNFPQFSVGSTGRAGSPGRREIGHGALG----ERALAQIIPSEEDFPYTIRLVA 433
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V++++G + A+I +AL D ++ + V G + D
Sbjct: 434 EVLESNGSSSQASICAGTLALMDAGVPIKAPVAGIAMGLVSDGE---------NYTILTD 484
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T G I +Q + ++ L+ AK ++++
Sbjct: 485 IQGLEDHLGDMDFKVAGTKDG-ITALQMDIKIQGITEQILTEALDQAKKARMEILEELTT 543
Query: 237 VIS 239
I+
Sbjct: 544 TIA 546
Score = 117 bits (292), Expect = 2e-24, Method: Composition-based stats.
Identities = 44/232 (18%), Positives = 87/232 (37%), Gaps = 26/232 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEK---VPMWIRNTKHGWITAEYGMLP 67
R + + ++K A G+ LV++GDT +L+ A ++ V + + G +P
Sbjct: 14 RPLEVEIGQLAKQANGAVLVRYGDTVVLSAAVASKEAKDVDFFPLTVNYEEKMYAVGKIP 73
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R GR R+ R+I R +R + QI ++ D
Sbjct: 74 GGFIKR------EGRPSERATLTARLIDRPIRPMFSEGFRNEVQITNIVMSVEQDCTPEM 127
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
AA+ G+ +A G +A + G + G +++ + D+
Sbjct: 128 AAMFGSSLA-------------LAISDIPFDGPIAGVDVGRINGEYVLNPTVEQAEQTDI 174
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
+ T I V+ A+ S++ L D I +L+ Q+++++
Sbjct: 175 ELTVAGTKE-AINMVESGAKE--VSEEDMLGALLFGFDAIKELVAFQEEIVA 223
>gi|227517327|ref|ZP_03947376.1| polynucleotide phosphorylase/polyadenylase [Enterococcus faecalis
TX0104]
gi|256960415|ref|ZP_05564586.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis
Merz96]
gi|257417198|ref|ZP_05594192.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis
AR01/DG]
gi|257420479|ref|ZP_05597469.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis
X98]
gi|293383916|ref|ZP_06629818.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis
R712]
gi|293388310|ref|ZP_06632824.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis
S613]
gi|300861666|ref|ZP_07107750.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis
TUSoD Ef11]
gi|307286415|ref|ZP_07566521.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis
TX0109]
gi|312906743|ref|ZP_07765743.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis
DAPTO 512]
gi|312910719|ref|ZP_07769558.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis
DAPTO 516]
gi|227075197|gb|EEI13160.1| polynucleotide phosphorylase/polyadenylase [Enterococcus faecalis
TX0104]
gi|256950911|gb|EEU67543.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis
Merz96]
gi|257159026|gb|EEU88986.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis
ARO1/DG]
gi|257162303|gb|EEU92263.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis
X98]
gi|291078743|gb|EFE16107.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis
R712]
gi|291082320|gb|EFE19283.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis
S613]
gi|295114393|emb|CBL33030.1| polyribonucleotide nucleotidyltransferase [Enterococcus sp. 7L76]
gi|300849127|gb|EFK76880.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis
TUSoD Ef11]
gi|306502428|gb|EFM71701.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis
TX0109]
gi|310627391|gb|EFQ10674.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis
DAPTO 512]
gi|311288982|gb|EFQ67538.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis
DAPTO 516]
gi|315143300|gb|EFT87316.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis
TX2141]
gi|315148895|gb|EFT92911.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis
TX4244]
gi|315154770|gb|EFT98786.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis
TX0043]
gi|315164498|gb|EFU08515.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis
TX1302]
Length = 704
Score = 149 bits (376), Expect = 3e-34, Method: Composition-based stats.
Identities = 44/243 (18%), Positives = 86/243 (35%), Gaps = 18/243 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56
+R GR+ +++R +S + GS L G T L+ T E ++ +
Sbjct: 318 IRPDGRKLDEIRHLSSEVSILPRVHGSGLFTRGQTQALSVCTLAPLGEHQIIDGLGVQDS 377
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y S G+ + + R+ G RAL ++ I +
Sbjct: 378 KRFIHHYNFPQFSVGSTGRAGSPGRREIGHGALG----ERALAQIIPSEEDFPYTIRLVA 433
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V++++G + A+I +AL D ++ + V G + D
Sbjct: 434 EVLESNGSSSQASICAGTLALMDAGVPIKAPVAGIAMGLVSDGE---------NYTILTD 484
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T G I +Q + ++ L+ AK ++++
Sbjct: 485 IQGLEDHLGDMDFKVAGTKDG-ITALQMDIKIQGITEQILTEALDQAKKARMEILEELTT 543
Query: 237 VIS 239
I+
Sbjct: 544 TIA 546
Score = 117 bits (292), Expect = 2e-24, Method: Composition-based stats.
Identities = 44/232 (18%), Positives = 86/232 (37%), Gaps = 26/232 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEK---VPMWIRNTKHGWITAEYGMLP 67
R + + ++K A G+ LV++GDT +L+ A ++ V + + G +P
Sbjct: 14 RPLEVEIGQLAKQANGAVLVRYGDTVVLSAAVASKEAKDVDFFPLTVNYEEKMYAVGKIP 73
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R GR R+ R+I R +R + QI + D
Sbjct: 74 GGFIKR------EGRPSERATLTARLIDRPIRPMFSEGFRNEVQITNIVMSVDQDCTPEM 127
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
AA+ G+ +A G +A + G + G +++ + D+
Sbjct: 128 AAMFGSSLA-------------LAISDIPFDGPIAGVDVGRINGEYVLNPTVEQAEQTDI 174
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
+ T I V+ A+ S++ L D I +L+ Q+++++
Sbjct: 175 ELTVAGTKE-AINMVESGAKE--VSEEDMLGALLFGFDAIKELVAFQEEIVA 223
>gi|150026085|ref|YP_001296911.1| polynucleotide phosphorylase/polyadenylase [Flavobacterium
psychrophilum JIP02/86]
gi|187610264|sp|A6H185|PNP_FLAPJ RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|149772626|emb|CAL44109.1| Polyribonucleotide nucleotidyltransferase [Flavobacterium
psychrophilum JIP02/86]
Length = 711
Score = 149 bits (376), Expect = 3e-34, Method: Composition-based stats.
Identities = 49/242 (20%), Positives = 83/242 (34%), Gaps = 20/242 (8%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
RL GR+ ++R I GS L G+T L TATL E
Sbjct: 319 RLDGRKTTEIRPIWCEVDYLPSVHGSALFTRGETQALATATLGTSREANQIDSPSQQGEE 378
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P STG S R+ G RAL++++ I + +
Sbjct: 379 KFYLHYNFPPFSTGEARPLRGTSRREVGHGNL----AQRALKNMIPAD--CPYTIRVVSE 432
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
V++++G + A + ++L D M + + + G A+ +
Sbjct: 433 VLESNGSSSMATVCAGTLSLMDAGIQMIRPVSGIAMGLITDGERFAVLSD---------I 483
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T G I Q + + A L A+D ++ + +
Sbjct: 484 LGDEDHLGDMDFKVTGTSEG-ITACQMDIKIDGLKYEIMEAALAQARDGRLHILNILTET 542
Query: 238 IS 239
++
Sbjct: 543 LA 544
Score = 101 bits (252), Expect = 7e-20, Method: Composition-based stats.
Identities = 38/234 (16%), Positives = 69/234 (29%), Gaps = 27/234 (11%)
Query: 7 QENQMREISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRN----TKHGWITA 61
R I++ ++K A+GS +V+ G T +L T K I + A
Sbjct: 11 DLGDGRNITIETGRLAKQADGSVVVRIGKTVILGTVVSSRKATPGIDFLPLTVDYREKFA 70
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
G P R R R++ R LR + Q++I
Sbjct: 71 AAGRFPGGFFKR------EARPSDSEVLTMRLVDRVLRPLFPSDYHAEVQVMIQLMSHDE 124
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
+ L + + + ++ G + G I++ +
Sbjct: 125 EVMPDA-------------LAGLAASAALALSDIPFETLISEARVGRIDGKFIINPSRAQ 171
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
D+D + I V+ E S+ + A + I I Q+
Sbjct: 172 LELSDIDMMI-GASTDSIAMVE--GEMKEISEAEMLEAIKFAHEHIKVQIAAQE 222
>gi|257080529|ref|ZP_05574890.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis
E1Sol]
gi|256988559|gb|EEU75861.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis
E1Sol]
Length = 704
Score = 149 bits (376), Expect = 3e-34, Method: Composition-based stats.
Identities = 44/243 (18%), Positives = 86/243 (35%), Gaps = 18/243 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56
+R GR+ +++R +S + GS L G T L+ T E ++ +
Sbjct: 318 IRPDGRKLDEIRHLSSEVSILPRVHGSGLFTRGQTQALSVCTLAPLGEHQIIDGLGVQDS 377
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y S G+ + + R+ G RAL ++ I +
Sbjct: 378 KRFIHHYNFPQFSVGSTGRAGSPGRREIGHGALG----ERALAQIIPSEEDFPYTIRLVA 433
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V++++G + A+I +AL D ++ + V G + D
Sbjct: 434 EVLESNGSSSQASICAGTLALMDAGVPIKAPVAGIAMGLVSDGE---------NYTILTD 484
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T G I +Q + ++ L+ AK ++++
Sbjct: 485 IQGLEDHLGDMDFKVAGTKDG-ITALQMDIKIQGITEQILTEALDQAKKARMEILEELTT 543
Query: 237 VIS 239
I+
Sbjct: 544 TIA 546
Score = 117 bits (292), Expect = 2e-24, Method: Composition-based stats.
Identities = 44/232 (18%), Positives = 86/232 (37%), Gaps = 26/232 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEK---VPMWIRNTKHGWITAEYGMLP 67
R + + ++K A G+ LV++GDT +L+ A ++ V + + G +P
Sbjct: 14 RPLEVEIGQLAKQANGAVLVRYGDTVVLSAAVASKEAKDVDFFPLTVNYEEKMYAVGKIP 73
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R GR R+ R+I R +R + QI + D
Sbjct: 74 GGFIKR------EGRPSERATLTARLIDRPIRPMFSEGFRNEVQITNIVMSVDQDCTPEM 127
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
AA+ G+ +A G +A + G + G +++ + D+
Sbjct: 128 AAMFGSSLA-------------LAISDIPFDGPIAGVDVGRINGEYVLNPTVEQAEQTDI 174
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
+ T I V+ A+ S++ L D I +L+ Q+++++
Sbjct: 175 ELTVAGTKE-AINMVESGAKE--VSEEDMLGALLFGFDAIKELVAFQEEIVA 223
>gi|229547506|ref|ZP_04436231.1| polynucleotide phosphorylase/polyadenylase [Enterococcus faecalis
TX1322]
gi|229548082|ref|ZP_04436807.1| polynucleotide phosphorylase/polyadenylase [Enterococcus faecalis
ATCC 29200]
gi|255970737|ref|ZP_05421323.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis
T1]
gi|256618176|ref|ZP_05475022.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis
ATCC 4200]
gi|256761105|ref|ZP_05501685.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis
T3]
gi|256854742|ref|ZP_05560106.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis
T8]
gi|256958346|ref|ZP_05562517.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis
DS5]
gi|256962906|ref|ZP_05567077.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis
HIP11704]
gi|257078344|ref|ZP_05572705.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis
JH1]
gi|257091307|ref|ZP_05585668.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis
CH188]
gi|294780196|ref|ZP_06745568.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis
PC1.1]
gi|307270429|ref|ZP_07551730.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis
TX4248]
gi|307273930|ref|ZP_07555142.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis
TX0855]
gi|307276709|ref|ZP_07557826.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis
TX2134]
gi|312905366|ref|ZP_07764481.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis
TX0635]
gi|312953165|ref|ZP_07772012.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis
TX0102]
gi|229306768|gb|EEN72764.1| polynucleotide phosphorylase/polyadenylase [Enterococcus faecalis
ATCC 29200]
gi|229307348|gb|EEN73335.1| polynucleotide phosphorylase/polyadenylase [Enterococcus faecalis
TX1322]
gi|255961755|gb|EET94231.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis
T1]
gi|256597703|gb|EEU16879.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis
ATCC 4200]
gi|256682356|gb|EEU22051.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis
T3]
gi|256710302|gb|EEU25346.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis
T8]
gi|256948842|gb|EEU65474.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis
DS5]
gi|256953402|gb|EEU70034.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis
HIP11704]
gi|256986374|gb|EEU73676.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis
JH1]
gi|257000119|gb|EEU86639.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis
CH188]
gi|294452739|gb|EFG21169.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis
PC1.1]
gi|306506608|gb|EFM75761.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis
TX2134]
gi|306509409|gb|EFM78467.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis
TX0855]
gi|306513207|gb|EFM81838.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis
TX4248]
gi|310628908|gb|EFQ12191.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis
TX0102]
gi|310631390|gb|EFQ14673.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis
TX0635]
gi|315031249|gb|EFT43181.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis
TX0017]
gi|315036532|gb|EFT48464.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis
TX0027]
gi|315152914|gb|EFT96930.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis
TX0031]
gi|315157487|gb|EFU01504.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis
TX0312]
gi|315162544|gb|EFU06561.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis
TX0645]
gi|315167175|gb|EFU11192.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis
TX1341]
gi|315171031|gb|EFU15048.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis
TX1342]
gi|315173459|gb|EFU17476.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis
TX1346]
gi|315578552|gb|EFU90743.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis
TX0630]
gi|323478998|gb|ADX78437.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis
62]
gi|327536187|gb|AEA95021.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis
OG1RF]
gi|329571128|gb|EGG52834.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis
TX1467]
Length = 704
Score = 149 bits (376), Expect = 3e-34, Method: Composition-based stats.
Identities = 44/243 (18%), Positives = 86/243 (35%), Gaps = 18/243 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56
+R GR+ +++R +S + GS L G T L+ T E ++ +
Sbjct: 318 IRPDGRKLDEIRHLSSEVSILPRVHGSGLFTRGQTQALSVCTLAPLGEHQIIDGLGVQDS 377
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y S G+ + + R+ G RAL ++ I +
Sbjct: 378 KRFIHHYNFPQFSVGSTGRAGSPGRREIGHGALG----ERALAQIIPSEEDFPYTIRLVA 433
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V++++G + A+I +AL D ++ + V G + D
Sbjct: 434 EVLESNGSSSQASICAGTLALMDAGVPIKAPVAGIAMGLVSDGE---------NYTILTD 484
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T G I +Q + ++ L+ AK ++++
Sbjct: 485 IQGLEDHLGDMDFKVAGTKDG-ITALQMDIKIQGITEQILTEALDQAKKARMEILEELTT 543
Query: 237 VIS 239
I+
Sbjct: 544 TIA 546
Score = 117 bits (292), Expect = 2e-24, Method: Composition-based stats.
Identities = 44/232 (18%), Positives = 87/232 (37%), Gaps = 26/232 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEK---VPMWIRNTKHGWITAEYGMLP 67
R + + ++K A G+ LV++GDT +L+ A ++ V + + G +P
Sbjct: 14 RPLEVEIGQLAKQANGAVLVRYGDTVVLSAAVASKEAKDVDFFPLTVNYEEKMYAVGKIP 73
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R GR R+ R+I R +R + QI ++ D
Sbjct: 74 GGFIKR------EGRPSERATLTARLIDRPIRPMFSEGFRNEVQITNIVMSVEQDCTPEM 127
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
AA+ G+ +A G +A + G + G +++ + D+
Sbjct: 128 AAMFGSSLA-------------LAISDIPFDGPIAGVDVGRINGEYVLNPTVEQAEQTDI 174
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
+ T I V+ A+ S++ L D I +L+ Q+++++
Sbjct: 175 ELTVAGTKE-AINMVESGAKE--VSEEDMLGALLFGFDAIKELVAFQEEIVA 223
>gi|262191202|ref|ZP_06049401.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae CT
5369-93]
gi|262032904|gb|EEY51443.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae CT
5369-93]
Length = 708
Score = 149 bits (375), Expect = 3e-34, Method: Composition-based stats.
Identities = 43/242 (17%), Positives = 91/242 (37%), Gaps = 18/242 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR+++ +R + + V GS L G+T L TATL + ++ + K
Sbjct: 316 RIDGREKDMVRALDVRTGVLPRTHGSALFTRGETQALVTATLGTQRDAQIIDELTGEKKD 375
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P G + R+ G + R + +V+ + + +
Sbjct: 376 HFLLHYNFPPYCVGETGFVGSPKRREIGHGRL----AKRGIAAVMPSPEEFPYTVRVVSE 431
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ G+ +AL D ++ + V + + + +
Sbjct: 432 ITESNGSSSMASVCGSSLALMDAGVPIKASVAGIAMGLVKEENDFVVLSD---------I 482
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T +G + +Q + +++ LN AK ++ +
Sbjct: 483 LGDEDHLGDMDFKVAGTATG-VTALQMDIKIEGITKEIMQIALNQAKGARLHILSVMDQA 541
Query: 238 IS 239
IS
Sbjct: 542 IS 543
Score = 91.4 bits (225), Expect = 9e-17, Method: Composition-based stats.
Identities = 34/228 (14%), Positives = 72/228 (31%), Gaps = 27/228 (11%)
Query: 14 ISLTRRV-SKYAEGSCLVKFGDTHLLTTATLEEKV----PMWIRNTKHGWITAEYGMLPR 68
++L V ++ A + + DT + + +++ + + T G +P
Sbjct: 17 VTLETGVMARQATAAVMATMDDTAVFVSVVGKKEAVVGQDFFPLTVNYQERTYAAGKIPG 76
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
R GR I R+I R +R + Q+I + D
Sbjct: 77 GFFKR------EGRPSEGETLIARLIDRPIRPLFPDGFTNEVQVIATVVSVNPDVQPDII 130
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
++ G A G + A G + G +++ E +D
Sbjct: 131 SMIGTSAA-------------LAISGLPFNGPIGAARVGHIDGQLVLNPSEKELKQSRLD 177
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
T ++ V+ A+ +++ A + D+ +IK +
Sbjct: 178 LVVAGT-DNAVLMVESEAQI--LTEEEMLAAVVFGHDQQQAVIKAINE 222
>gi|257083264|ref|ZP_05577625.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis
Fly1]
gi|257417915|ref|ZP_05594909.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis
T11]
gi|256991294|gb|EEU78596.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis
Fly1]
gi|257159743|gb|EEU89703.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis
T11]
Length = 704
Score = 149 bits (375), Expect = 3e-34, Method: Composition-based stats.
Identities = 44/243 (18%), Positives = 86/243 (35%), Gaps = 18/243 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56
+R GR+ +++R +S + GS L G T L+ T E ++ +
Sbjct: 318 IRPDGRKLDEIRHLSSEVSILPRVHGSGLFTRGQTQALSVCTLAPLGEHQIIDGLGVQDS 377
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y S G+ + + R+ G RAL ++ I +
Sbjct: 378 KRFIHHYNFPQFSVGSTGRAGSPGRREIGHGALG----ERALAQIIPSEEDFPYTIRLVA 433
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V++++G + A+I +AL D ++ + V G + D
Sbjct: 434 EVLESNGSSSQASICAGTLALMDAGVPIKAPVAGIAMGLVSDGE---------NYTILTD 484
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T G I +Q + ++ L+ AK ++++
Sbjct: 485 IQGLEDHLGDMDFKVAGTKDG-ITALQMDIKIQGITEQILTEALDQAKKARMEILEELTT 543
Query: 237 VIS 239
I+
Sbjct: 544 TIA 546
Score = 116 bits (291), Expect = 2e-24, Method: Composition-based stats.
Identities = 44/232 (18%), Positives = 86/232 (37%), Gaps = 26/232 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEK---VPMWIRNTKHGWITAEYGMLP 67
R + + ++K A G+ LV++GDT +L+ A ++ V + + G +P
Sbjct: 14 RPLEVEIGQLAKQANGAVLVRYGDTVVLSAAVASKEAKDVDFFPLTVNYEEKMYAVGKIP 73
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R GR R+ R+I R +R + QI + D
Sbjct: 74 GGFIKR------EGRPSERATLTARLIDRPIRPMFSEGFRNEVQITNIVMSVDQDCTPEM 127
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
AA+ G+ +A G +A + G + G +++ + D+
Sbjct: 128 AAMFGSSLA-------------LAISDIPFDGPIAGVDVGRIDGEYVLNPTVEQAEQTDI 174
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
+ T I V+ A+ S++ L D I +L+ Q+++++
Sbjct: 175 ELTVAGTKE-AINMVESGAKE--VSEEDMLGALLFGFDAIKELVAFQEEIVA 223
>gi|86141304|ref|ZP_01059850.1| putative polyribonucleotide nucleotidyltransferase
[Leeuwenhoekiella blandensis MED217]
gi|85831863|gb|EAQ50318.1| putative polyribonucleotide nucleotidyltransferase
[Leeuwenhoekiella blandensis MED217]
Length = 741
Score = 149 bits (375), Expect = 3e-34, Method: Composition-based stats.
Identities = 46/244 (18%), Positives = 82/244 (33%), Gaps = 18/244 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
+RL GR+ ++R I GS + G+T L T TL E
Sbjct: 317 LRLDGRKTTEIRPIWCETDYLPSVHGSSIFTRGETQALATVTLGTSREANQIDMPSYEGE 376
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P STG S R+ G RAL+ ++ + +
Sbjct: 377 ETFYLHYNFPPFSTGEARPIRGTSRREVGHGNL----AQRALKGMIPAD--CPYTVRVVS 430
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
++++++G + A + +A+ D ++ + + + + D
Sbjct: 431 EILESNGSSSMATVCAGTMAIMDAGVKLKKPVSGIAMGLITDVETG-------KYAVLSD 483
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T G I Q + S + L+ A+D ++ D
Sbjct: 484 ILGDEDHLGDMDFKVTGTADG-ITACQMDIKVKGLSYEILVKALHQARDGRLHILNHLTD 542
Query: 237 VISN 240
IS
Sbjct: 543 TISE 546
Score = 104 bits (258), Expect = 1e-20, Method: Composition-based stats.
Identities = 36/232 (15%), Positives = 72/232 (31%), Gaps = 26/232 (11%)
Query: 7 QENQMREISLTRR-VSKYAEGSCLVKFGDTHLLTTA---TLEEKVPMWIRNTKHGWITAE 62
REIS+ ++K A GS +V+ G LL T + V + A
Sbjct: 11 DLGDGREISIETGKLAKQAHGSVVVQSGKCMLLCTVVSNYKQSDVDFLPLTVDYREKFAA 70
Query: 63 YGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQAD 122
G P R R R++ R LR + Q++I +
Sbjct: 71 AGRYPGGFFKR------EARPSDGEVLTMRLVDRVLRPLFPKDYHAETQVMIQLMSHDDE 124
Query: 123 GGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGED 182
+ + + + ++ + G + G I++ +
Sbjct: 125 VMPDA-------------MAGLAASAAIQLSDFPFECAISEVRVGRVNGEFIINPSRAQL 171
Query: 183 STIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
+ D+D + + ++ V+ E S++ + A + I + Q
Sbjct: 172 AESDIDM-VIGASADSVMMVE--GEMDEISEEEMTEAIKAAHEAIKVQCEAQ 220
>gi|121728394|ref|ZP_01681422.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae V52]
gi|147674727|ref|YP_001216141.1| polynucleotide phosphorylase/polyadenylase [Vibrio cholerae O395]
gi|187611333|sp|A5F913|PNP_VIBC3 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|121629328|gb|EAX61760.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae V52]
gi|146316610|gb|ABQ21149.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae O395]
gi|227012472|gb|ACP08682.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae O395]
Length = 712
Score = 149 bits (375), Expect = 3e-34, Method: Composition-based stats.
Identities = 43/242 (17%), Positives = 91/242 (37%), Gaps = 18/242 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR+++ +R + + V GS L G+T L TATL + ++ + K
Sbjct: 316 RIDGREKDMVRALDVRTGVLPRTHGSALFTRGETQALVTATLGTQRDAQIIDELTGEKKD 375
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P G + R+ G + R + +V+ + + +
Sbjct: 376 HFLLHYNFPPYCVGETGFVGSPKRREIGHGRL----AKRGIAAVMPSPEEFPYTVRVVSE 431
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ G+ +AL D ++ + V + + + +
Sbjct: 432 ITESNGSSSMASVCGSSLALMDAGVPIKASVAGIAMGLVKEENDFVVLSD---------I 482
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T +G + +Q + +++ LN AK ++ +
Sbjct: 483 LGDEDHLGDMDFKVAGTATG-VTALQMDIKIEGITKEIMQIALNQAKGARLHILSVMDQA 541
Query: 238 IS 239
IS
Sbjct: 542 IS 543
Score = 91.4 bits (225), Expect = 9e-17, Method: Composition-based stats.
Identities = 34/228 (14%), Positives = 72/228 (31%), Gaps = 27/228 (11%)
Query: 14 ISLTRRV-SKYAEGSCLVKFGDTHLLTTATLEEKV----PMWIRNTKHGWITAEYGMLPR 68
++L V ++ A + + DT + + +++ + + T G +P
Sbjct: 17 VTLETGVMARQATAAVMATMDDTAVFVSVVGKKEAVVGQDFFPLTVNYQERTYAAGKIPG 76
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
R GR I R+I R +R + Q+I + D
Sbjct: 77 GFFKR------EGRPSEGETLIARLIDRPIRPLFPDGFTNEVQVIATVVSVNPDVQPDII 130
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
++ G A G + A G + G +++ E +D
Sbjct: 131 SMIGTSAA-------------LAISGLPFNGPIGAARVGHIDGQLVLNPSEKELKQSRLD 177
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
T ++ V+ A+ +++ A + D+ +IK +
Sbjct: 178 LVVAGT-DNAVLMVESEAQI--LTEEEMLAAVVFGHDQQQAVIKAINE 222
>gi|257873450|ref|ZP_05653103.1| polyribonucleotide nucleotidyltransferase [Enterococcus
casseliflavus EC10]
gi|257807614|gb|EEV36436.1| polyribonucleotide nucleotidyltransferase [Enterococcus
casseliflavus EC10]
Length = 705
Score = 149 bits (375), Expect = 3e-34, Method: Composition-based stats.
Identities = 44/243 (18%), Positives = 86/243 (35%), Gaps = 18/243 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56
+R GRQ +++R ++ + GS L G T L+ T E ++ + +
Sbjct: 318 IRPDGRQLDEIRPLASEVGLLPRVHGSGLFTRGQTQALSACTLAPLGEHQIIDGLGVEES 377
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y S G+ + + R+ G RAL V+ I +
Sbjct: 378 KRFIHHYNFPQFSVGSTGRAGSPGRREIGHGALG----ERALAQVIPDETDFPYTIRLVA 433
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V++++G + A+I +AL D ++ + V G + D
Sbjct: 434 EVLESNGSSSQASICAGTLALMDAGVPIKAPVAGIAMGLVSDGE---------NYTILTD 484
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T G I +Q + ++ L+ AK +++
Sbjct: 485 IQGLEDHLGDMDFKVAGTKDG-ITALQMDIKIQGITEQILTEALDQAKKARMEILNELTS 543
Query: 237 VIS 239
++
Sbjct: 544 TLA 546
Score = 115 bits (287), Expect = 7e-24, Method: Composition-based stats.
Identities = 42/232 (18%), Positives = 85/232 (36%), Gaps = 26/232 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEK---VPMWIRNTKHGWITAEYGMLP 67
R + + ++K A G+ LV++GDT +L+ A ++ + + G +P
Sbjct: 14 RPLEVEVGQLAKQANGAVLVRYGDTVVLSAAVASKEAKDTDFFPLTINYEEKMYAVGKVP 73
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R GR + R+I R +R + Q+ ++ D
Sbjct: 74 GGFIKR------EGRPSTEATLTARLIDRPIRPMFAEGFRNEVQVTNIVMSVEQDCTPAM 127
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
AA+ G+ +A G +A + G + G +++ + D+
Sbjct: 128 AAMLGSSLA-------------LSISDIPFDGPIAGVDVGRVNGEYVLNPTVEQAEQTDI 174
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
+ T I V+ A+ S++ L D I +L+ Q++V++
Sbjct: 175 ELTVAGTKK-AINMVESGAKE--VSEEDMLGALLFGFDAIKELVAFQEEVVA 223
>gi|153826503|ref|ZP_01979170.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae MZO-2]
gi|254226546|ref|ZP_04920129.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae V51]
gi|254291886|ref|ZP_04962668.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae
AM-19226]
gi|125620950|gb|EAZ49301.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae V51]
gi|149739683|gb|EDM53890.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae MZO-2]
gi|150422172|gb|EDN14137.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae
AM-19226]
Length = 708
Score = 149 bits (375), Expect = 3e-34, Method: Composition-based stats.
Identities = 43/242 (17%), Positives = 91/242 (37%), Gaps = 18/242 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR+++ +R + + V GS L G+T L TATL + ++ + K
Sbjct: 316 RIDGREKDMVRALDVRTGVLPRTHGSALFTRGETQALVTATLGTQRDAQIIDELTGEKKD 375
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P G + R+ G + R + +V+ + + +
Sbjct: 376 HFLLHYNFPPYCVGETGFVGSPKRREIGHGRL----AKRGIAAVMPSPEEFPYTVRVVSE 431
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ G+ +AL D ++ + V + + + +
Sbjct: 432 ITESNGSSSMASVCGSSLALMDAGVPIKASVAGIAMGLVKEENDFVVLSD---------I 482
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T +G + +Q + +++ LN AK ++ +
Sbjct: 483 LGDEDHLGDMDFKVAGTATG-VTALQMDIKIEGITKEIMQIALNQAKGARLHILSVMDQA 541
Query: 238 IS 239
IS
Sbjct: 542 IS 543
Score = 91.4 bits (225), Expect = 9e-17, Method: Composition-based stats.
Identities = 34/228 (14%), Positives = 72/228 (31%), Gaps = 27/228 (11%)
Query: 14 ISLTRRV-SKYAEGSCLVKFGDTHLLTTATLEEKV----PMWIRNTKHGWITAEYGMLPR 68
++L V ++ A + + DT + + +++ + + T G +P
Sbjct: 17 VTLETGVMARQATAAVMATMDDTAVFVSVVGKKEAVVGQDFFPLTVNYQERTYAAGKIPG 76
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
R GR I R+I R +R + Q+I + D
Sbjct: 77 GFFKR------EGRPSEGETLIARLIDRPIRPLFPDGFTNEVQVIATVVSVNPDVQPDII 130
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
++ G A G + A G + G +++ E +D
Sbjct: 131 SMIGTSAA-------------LAISGLPFNGPIGAARVGHIDGQLVLNPSEKELKQSRLD 177
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
T ++ V+ A+ +++ A + D+ +IK +
Sbjct: 178 LVVAGT-DNAVLMVESEAQI--LTEEEMLAAVVFGHDQQQAVIKAINE 222
>gi|297811589|ref|XP_002873678.1| hypothetical protein ARALYDRAFT_488299 [Arabidopsis lyrata subsp.
lyrata]
gi|297319515|gb|EFH49937.1| hypothetical protein ARALYDRAFT_488299 [Arabidopsis lyrata subsp.
lyrata]
Length = 992
Score = 149 bits (375), Expect = 4e-34, Method: Composition-based stats.
Identities = 49/244 (20%), Positives = 89/244 (36%), Gaps = 11/244 (4%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56
R+ GR +++R I GS L GDT +L T T E + +
Sbjct: 363 FRVDGRHLDEVRPIYCESHYLPALHGSALFSRGDTQVLCTVTLGAPGEAQSLDSLVGPPK 422
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P T KR ++ R+ G +AL +V+ + I+
Sbjct: 423 KRFMLHYSFPPYCTNEVGKRGGLNRREVGHGTL----AEKALLAVLPPEEAFPYTVRINS 478
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V+ +DG T A++ G +AL D + + + + S + + D
Sbjct: 479 EVMSSDGSTSMASVCGGSMALMDAGIPLRAHVAGVSVGLITDVDPS--SGEIKDYRIVTD 536
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T +G + +Q + A D L A++ ++ +
Sbjct: 537 ILGLEDHLGDMDFKIAGTRNG-VTAIQLDIKPAGIPLDIVCESLENAREARLQILDHMER 595
Query: 237 VISN 240
I++
Sbjct: 596 NINS 599
Score = 82.6 bits (202), Expect = 4e-14, Method: Composition-based stats.
Identities = 40/235 (17%), Positives = 76/235 (32%), Gaps = 29/235 (12%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATL---EEKVPMWIRNTKHGWITAEYGMLP 67
R +S ++++A GS ++ T +L+T T + + G++P
Sbjct: 62 RVVSFETGKIARFANGSVVLGMDQTKVLSTVTCAKTDSPRDFLPLTVDYQEKQYAQGLIP 121
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
+ R G R R+I R +R + QI+
Sbjct: 122 NTYMRR------EGAPKERELLCGRLIDRPIRPLFPSGFYHEVQIMASVLSSDGKQDPDI 175
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
A + AL G + I G +CG +V+ E S+ D+
Sbjct: 176 LAANASSAALM-------------LSDVPWGGPIGVIRIGRICGQFVVNPTMDELSSSDL 222
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAK-DRIADLIKLQKDVISNE 241
+ + T + + + S+ A L LA + I L + ++ +
Sbjct: 223 NLIYACTRDKT-MMIDVQSRE--ISEKDLAAALRLAHPEAIKYLDPQIR--LAEK 272
>gi|297580773|ref|ZP_06942699.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae RC385]
gi|297535189|gb|EFH74024.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae RC385]
Length = 709
Score = 149 bits (375), Expect = 4e-34, Method: Composition-based stats.
Identities = 43/242 (17%), Positives = 91/242 (37%), Gaps = 18/242 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR+++ +R + + V GS L G+T L TATL + ++ + K
Sbjct: 316 RIDGREKDMVRALDVRTGVLPRTHGSALFTRGETQALVTATLGTQRDAQIIDELTGEKKD 375
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P G + R+ G + R + +V+ + + +
Sbjct: 376 HFLLHYNFPPYCVGETGFVGSPKRREIGHGRL----AKRGIAAVMPSPEEFPYTVRVVSE 431
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ G+ +AL D ++ + V + + + +
Sbjct: 432 ITESNGSSSMASVCGSSLALMDAGVPIKASVAGIAMGLVKEENDFVVLSD---------I 482
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T +G + +Q + +++ LN AK ++ +
Sbjct: 483 LGDEDHLGDMDFKVAGTATG-VTALQMDIKIEGITKEIMQIALNQAKGARLHILSVMDQA 541
Query: 238 IS 239
IS
Sbjct: 542 IS 543
Score = 91.4 bits (225), Expect = 9e-17, Method: Composition-based stats.
Identities = 34/228 (14%), Positives = 72/228 (31%), Gaps = 27/228 (11%)
Query: 14 ISLTRRV-SKYAEGSCLVKFGDTHLLTTATLEEKV----PMWIRNTKHGWITAEYGMLPR 68
++L V ++ A + + DT + + +++ + + T G +P
Sbjct: 17 VTLETGVMARQATAAVMATMDDTAVFVSVVGKKEAVVGQDFFPLTVNYQERTYAAGKIPG 76
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
R GR I R+I R +R + Q+I + D
Sbjct: 77 GFFKR------EGRPSEGETLIARLIDRPIRPLFPDGFTNEVQVIATVVSVNPDVQPDII 130
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
++ G A G + A G + G +++ E +D
Sbjct: 131 SMIGTSAA-------------LAISGLPFNGPIGAARVGHIDGQLVLNPSEKELKQSRLD 177
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
T ++ V+ A+ +++ A + D+ +IK +
Sbjct: 178 LVVAGT-DNAVLMVESEAQI--LTEEEMLAAVVFGHDQQQAVIKAINE 222
>gi|259156595|gb|ACV96538.1| polyribonucleotide nucleotidyltransferase [Vibrio fluvialis Ind1]
Length = 708
Score = 149 bits (375), Expect = 4e-34, Method: Composition-based stats.
Identities = 43/242 (17%), Positives = 91/242 (37%), Gaps = 18/242 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR+++ +R + + V GS L G+T L TATL + ++ + K
Sbjct: 316 RIDGREKDMVRALDVRTGVLPRTHGSALFTRGETQALVTATLGTQRDAQIIDELTGEKKD 375
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P G + R+ G + R + +V+ + + +
Sbjct: 376 HFLLHYNFPPYCVGETGFVGSPKRREIGHGRL----AKRGIAAVMPSPEEFPYTVRVVSE 431
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ G+ +AL D ++ + V + + + +
Sbjct: 432 ITESNGSSSMASVCGSSLALMDAGVPIKASVAGIAMGLVKEENDFVVLSD---------I 482
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T +G + +Q + +++ LN AK ++ +
Sbjct: 483 LGDEDHLGDMDFKVAGTATG-VTALQMDIKIEGITKEIMQIALNQAKGARLHILSVMDQA 541
Query: 238 IS 239
IS
Sbjct: 542 IS 543
Score = 91.4 bits (225), Expect = 9e-17, Method: Composition-based stats.
Identities = 34/228 (14%), Positives = 72/228 (31%), Gaps = 27/228 (11%)
Query: 14 ISLTRRV-SKYAEGSCLVKFGDTHLLTTATLEEKV----PMWIRNTKHGWITAEYGMLPR 68
++L V ++ A + + DT + + +++ + + T G +P
Sbjct: 17 VTLETGVMARQATAAVMATMDDTAVFVSVVGKKEAVVGQDFFPLTVNYQERTYAAGKIPG 76
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
R GR I R+I R +R + Q+I + D
Sbjct: 77 GFFKR------EGRPSEGETLIARLIDRPIRPLFPDGFTNEVQVIATVVSVNPDVQPDII 130
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
++ G A G + A G + G +++ E +D
Sbjct: 131 SMIGTSAA-------------LAISGLPFNGPIGAARVGHIDGQLVLNPSEKELKQSRLD 177
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
T ++ V+ A+ +++ A + D+ +IK +
Sbjct: 178 LVVAGT-DNAVLMVESEAQI--LTEEEMLAAVVFGHDQQQAVIKAINE 222
>gi|149198134|ref|ZP_01875181.1| ribonuclease PH [Lentisphaera araneosa HTCC2155]
gi|149138736|gb|EDM27142.1| ribonuclease PH [Lentisphaera araneosa HTCC2155]
Length = 238
Score = 149 bits (375), Expect = 4e-34, Method: Composition-based stats.
Identities = 103/237 (43%), Positives = 142/237 (59%), Gaps = 5/237 (2%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR+ GRQ +Q+REI K + GS L G T ++ T +++ +P W + GW+T
Sbjct: 1 MRVDGRQNDQLREIKFELGFVKNSLGSALSACGLTEVICTVNIKDGLPGWKSSGSGGWLT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEY MLP +T R KREA GGRS EIQR+IGR LR+ VDL LG R I IDCDV+
Sbjct: 61 AEYRMLPGATHTRSKREAG---VGGRSSEIQRLIGRTLRAAVDLDKLGDRTIQIDCDVLN 117
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTR A+I GA +AL + L+ ME+ +S ++K ++AIS G++ G ++DL Y
Sbjct: 118 ADGGTRCASINGAMLALMNALKKMEE--QGVDISGIIKTPLSAISVGVVKGQALLDLCYK 175
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
EDS DVD N +MT G VEVQG+ E A FS+ +L+ + ++ +
Sbjct: 176 EDSAADVDMNVIMTAKGDFVEVQGTGEEAVFSRQELNELLDAGEKGTKEISAELAKI 232
>gi|229512909|ref|ZP_04402376.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae TMA 21]
gi|229350158|gb|EEO15111.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae TMA 21]
Length = 708
Score = 149 bits (375), Expect = 4e-34, Method: Composition-based stats.
Identities = 43/242 (17%), Positives = 91/242 (37%), Gaps = 18/242 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR+++ +R + + V GS L G+T L TATL + ++ + K
Sbjct: 316 RIDGREKDMVRALDVRTGVLPRTHGSALFTRGETQALVTATLGTQRDAQIIDELTGEKKD 375
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P G + R+ G + R + +V+ + + +
Sbjct: 376 HFLLHYNFPPYCVGETGFVGSPKRREIGHGRL----AKRGIAAVMPSPEEFPYTVRVVSE 431
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ G+ +AL D ++ + V + + + +
Sbjct: 432 ITESNGSSSMASVCGSSLALMDAGVPIKASVAGIAMGLVKEENDFVVLSD---------I 482
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T +G + +Q + +++ LN AK ++ +
Sbjct: 483 LGDEDHLGDMDFKVAGTATG-VTALQMDIKIEGITKEIMQIALNQAKGARLHILSVMDQA 541
Query: 238 IS 239
IS
Sbjct: 542 IS 543
Score = 91.4 bits (225), Expect = 9e-17, Method: Composition-based stats.
Identities = 34/228 (14%), Positives = 72/228 (31%), Gaps = 27/228 (11%)
Query: 14 ISLTRRV-SKYAEGSCLVKFGDTHLLTTATLEEKV----PMWIRNTKHGWITAEYGMLPR 68
++L V ++ A + + DT + + +++ + + T G +P
Sbjct: 17 VTLETGVMARQATAAVMATMDDTAVFVSVVGKKEAVVGQDFFPLTVNYQERTYAAGKIPG 76
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
R GR I R+I R +R + Q+I + D
Sbjct: 77 GFFKR------EGRPSEGETLIARLIDRPIRPLFPDGFTNEVQVIATVVSVNPDVQPDII 130
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
++ G A G + A G + G +++ E +D
Sbjct: 131 SMIGTSAA-------------LAISGLPFNGPIGAARVGHIDGQLVLNPSEKELKQSRLD 177
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
T ++ V+ A+ +++ A + D+ +IK +
Sbjct: 178 LVVAGT-DNAVLMVESEAQI--LTEEEMLAAVVFGHDQQQAVIKAINE 222
>gi|288818483|ref|YP_003432831.1| polyribonucleotide nucleotidyltransferase [Hydrogenobacter
thermophilus TK-6]
gi|288787883|dbj|BAI69630.1| polyribonucleotide nucleotidyltransferase [Hydrogenobacter
thermophilus TK-6]
gi|308752073|gb|ADO45556.1| polyribonucleotide nucleotidyltransferase [Hydrogenobacter
thermophilus TK-6]
Length = 705
Score = 149 bits (375), Expect = 4e-34, Method: Composition-based stats.
Identities = 45/245 (18%), Positives = 82/245 (33%), Gaps = 19/245 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWI-----RNTK 55
+R+ GR+ ++R IS+ + + GS + G T T TL +
Sbjct: 311 VRIDGRKPEEIRPISIEIKPFERPHGSAIFTRGQTQAFATVTLGSPHEAQLVESIYEGEV 370
Query: 56 HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115
Y P STG R+ G RA+ ++ I I
Sbjct: 371 FKRFMLHYNFPPFSTGEAKPWGPPRRREIGHGAL----AERAIEPLIPPEEEFPYIIRIV 426
Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIV 175
++++++G T A + +AL D ++ + +++G I
Sbjct: 427 SNILESNGSTSMATVCAGSLALFDAGVPIKKHVAGIAMGLIMEGERYVILSD-------- 478
Query: 176 DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
+ ED D+D T G I VQ + ++ L AK +++
Sbjct: 479 -ILGDEDQLGDMDFKVAGTKDG-ITSVQMDIKIKGLKKEIMIESLMQAKRGRLYILEKMY 536
Query: 236 DVISN 240
+ I
Sbjct: 537 EAIPE 541
Score = 98.8 bits (244), Expect = 6e-19, Method: Composition-based stats.
Identities = 47/235 (20%), Positives = 84/235 (35%), Gaps = 28/235 (11%)
Query: 13 EISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEY----GMLP 67
I + +K ++G+ +V+ GDT +L TA + E+ I E G +P
Sbjct: 14 PIIIETGHYAKLSDGAVVVRQGDTAVLVTAVVSEEPLQDIDFMPLSVDYREQSSAWGKIP 73
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R G+ R + R+I R +R + I
Sbjct: 74 GGFVKR------EGKPTDREVLVSRVIDRPIRPLFPEGFFHDVVITALTLSADDKYDPDV 127
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
AITGA ALH +G +A + + G + + Y E D+
Sbjct: 128 LAITGASAALH-------------ISRIPFEGPIAGLRVCRIEGKFVANPTYEERQKADL 174
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNEV 242
+ ++ I+ V+G A+ ++ F L + +LI Q++ + +V
Sbjct: 175 EIILAVSKD-SIIMVEGGAKE--VDEEVFANALYFGLEAGKELISAQEE-LREKV 225
>gi|153215841|ref|ZP_01950173.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae 1587]
gi|153829184|ref|ZP_01981851.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae 623-39]
gi|229520938|ref|ZP_04410360.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae TM
11079-80]
gi|229530452|ref|ZP_04419840.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae
12129(1)]
gi|124114558|gb|EAY33378.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae 1587]
gi|148875373|gb|EDL73508.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae 623-39]
gi|229332225|gb|EEN97713.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae
12129(1)]
gi|229342171|gb|EEO07167.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae TM
11079-80]
Length = 709
Score = 149 bits (375), Expect = 4e-34, Method: Composition-based stats.
Identities = 43/242 (17%), Positives = 91/242 (37%), Gaps = 18/242 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR+++ +R + + V GS L G+T L TATL + ++ + K
Sbjct: 316 RIDGREKDMVRALDVRTGVLPRTHGSALFTRGETQALVTATLGTQRDAQIIDELTGEKKD 375
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P G + R+ G + R + +V+ + + +
Sbjct: 376 HFLLHYNFPPYCVGETGFVGSPKRREIGHGRL----AKRGIAAVMPSPEEFPYTVRVVSE 431
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ G+ +AL D ++ + V + + + +
Sbjct: 432 ITESNGSSSMASVCGSSLALMDAGVPIKASVAGIAMGLVKEENDFVVLSD---------I 482
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T +G + +Q + +++ LN AK ++ +
Sbjct: 483 LGDEDHLGDMDFKVAGTATG-VTALQMDIKIEGITKEIMQIALNQAKGARLHILSVMDQA 541
Query: 238 IS 239
IS
Sbjct: 542 IS 543
Score = 91.4 bits (225), Expect = 9e-17, Method: Composition-based stats.
Identities = 34/228 (14%), Positives = 72/228 (31%), Gaps = 27/228 (11%)
Query: 14 ISLTRRV-SKYAEGSCLVKFGDTHLLTTATLEEKV----PMWIRNTKHGWITAEYGMLPR 68
++L V ++ A + + DT + + +++ + + T G +P
Sbjct: 17 VTLETGVMARQATAAVMATMDDTAVFVSVVGKKEAVVGQDFFPLTVNYQERTYAAGKIPG 76
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
R GR I R+I R +R + Q+I + D
Sbjct: 77 GFFKR------EGRPSEGETLIARLIDRPIRPLFPDGFTNEVQVIATVVSVNPDVQPDII 130
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
++ G A G + A G + G +++ E +D
Sbjct: 131 SMIGTSAA-------------LAISGLPFNGPIGAARVGHIDGQLVLNPSEKELKQSRLD 177
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
T ++ V+ A+ +++ A + D+ +IK +
Sbjct: 178 LVVAGT-DNAVLMVESEAQI--LTEEEMLAAVVFGHDQQQAVIKAINE 222
>gi|260223146|emb|CBA33418.1| Polyribonucleotide nucleotidyltransferase [Curvibacter putative
symbiont of Hydra magnipapillata]
Length = 722
Score = 149 bits (375), Expect = 4e-34, Method: Composition-based stats.
Identities = 43/243 (17%), Positives = 89/243 (36%), Gaps = 18/243 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +R I + V GS L G+T L ATL + + +
Sbjct: 338 RIDGRDTRTVRAIEIRNGVLPRTHGSSLFTRGETQALVIATLGTERDAQRIDALSGEYED 397
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y M P +TG + R+ G + RAL +V+ + + +
Sbjct: 398 RFMLHYNMPPFATGETGRVGTPKRREIGHGRL----AKRALVAVLPTKEEFPYSLRVVSE 453
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ G ++L D ++ + + + + A+ +
Sbjct: 454 ITESNGSSSMASVCGGCLSLMDAGVPLKAHVAGIAMGLIKEDNRFAVLTD---------I 504
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T +G I +Q + +++ L AK+ ++ +
Sbjct: 505 LGDEDHLGDMDFKVAGTTNG-ITALQMDIKIQGITKEIMQVALAQAKEARVHILGEMQKS 563
Query: 238 ISN 240
++
Sbjct: 564 MAE 566
Score = 86.8 bits (213), Expect = 3e-15, Method: Composition-based stats.
Identities = 30/233 (12%), Positives = 74/233 (31%), Gaps = 31/233 (13%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT----KHGWITAEYGMLPR 68
+++ +++ + G+ L+ T +L T + + + + G +P
Sbjct: 39 VTMETGEIARQSTGAVLLDMDGTVVLATVVGKTEGKPGQDFFPLTVDYLEKSYAAGKIPG 98
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
S R GR R+I R +R + +++ + + A
Sbjct: 99 SFFKR------EGRPSEFETLTSRLIDRPIRPLFPEGFFNEVHVVVHTVSLNPEVDADIA 152
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+ A G + A G + G +++ +D
Sbjct: 153 AMIAVSAA-------------LSVSGIPFNGPIGAARVGYVNGEYVLNPGQTARKDSIMD 199
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKD----RIADLIKLQKDV 237
T++ ++ V+ A++ S++ + + I + +L +D
Sbjct: 200 LVVAGTEA-AVLMVESEAQQ--LSEEVMLGAVVYGHEQSKTAINAIHELVRDA 249
>gi|297566425|ref|YP_003685397.1| polyribonucleotide nucleotidyltransferase [Meiothermus silvanus DSM
9946]
gi|296850874|gb|ADH63889.1| polyribonucleotide nucleotidyltransferase [Meiothermus silvanus DSM
9946]
Length = 718
Score = 149 bits (375), Expect = 4e-34, Method: Composition-based stats.
Identities = 50/243 (20%), Positives = 87/243 (35%), Gaps = 18/243 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRN----TKHG 57
R GR Q+R I + V A GS + G+T +L TL + +
Sbjct: 329 RADGRTNTQVRPIWIEADVLPRAHGSAVFARGETQVLGVVTLGTGRDAQLVDDLGLDTED 388
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P STG + VS R+ G RALR+V+ I + D
Sbjct: 389 PFLVHYNFPPYSTGEVKRLRGVSRREVGHGNL----AKRALRAVLPSQEEFPYTIRVVGD 444
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
V++++G + A +AL D ++ + V +G + +
Sbjct: 445 VLESNGSSSMATTCAGCLALMDAGVPIKKPVAGVAMGLVSEGDRHVVLTD---------I 495
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED+ D+D T G + +Q + + S + L A++ ++ +V
Sbjct: 496 LGLEDALGDMDFKVTGTKDG-VTALQMDIKISGLSSETLRQALMQAREARLFILDKMTEV 554
Query: 238 ISN 240
+
Sbjct: 555 LPE 557
Score = 109 bits (273), Expect = 2e-22, Method: Composition-based stats.
Identities = 39/229 (17%), Positives = 77/229 (33%), Gaps = 28/229 (12%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATL---EEKVPMWIRNTKHGWITAEYGMLP 67
R +S+ +K GS V++GDT ++ TA + + G +P
Sbjct: 21 RTLSIETGKYAKQVSGSVWVRYGDTVVMATAQASDKPIEADFLPLTVEFEERHYAVGKIP 80
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
S R GR G ++ R+ R +R + Q+I+ +
Sbjct: 81 GSFMRR------EGRPGEKAILSARLTDRPIRPLFPKGFRHEVQVILTVLSADQENTPDI 134
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
+ + G +A++ G+ G +++ E+S D+
Sbjct: 135 LG-------------PIAASAALTLSDIPWNGPIASVRVGLQDGRLVLNPVAAEES--DL 179
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
D + I+ V+ A ++ L A + +I+LQ+
Sbjct: 180 DLVVAGSKD-AIIMVEAGARE--IPEEQLVQALEFAHRAMQPIIELQEQ 225
>gi|304440366|ref|ZP_07400255.1| ribonuclease PH/Ham1 protein [Peptoniphilus duerdenii ATCC
BAA-1640]
gi|304371118|gb|EFM24735.1| ribonuclease PH/Ham1 protein [Peptoniphilus duerdenii ATCC
BAA-1640]
Length = 435
Score = 149 bits (375), Expect = 4e-34, Method: Composition-based stats.
Identities = 100/238 (42%), Positives = 153/238 (64%), Gaps = 4/238 (1%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR R+ N++R++ +T +GSCLV+ G+T ++ TA +E+KVP +++ GW++
Sbjct: 1 MR-D-REFNKIRDLKITPNYLSSPDGSCLVEMGNTKIIVTAMIEDKVPFFLKGQGVGWLS 58
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEY M+P ST R R+ G+ GRSQEIQR+IGRALRS +DLS +G R I IDCDVI
Sbjct: 59 AEYSMIPGSTQRRKPRDISRGKIDGRSQEIQRLIGRALRSAIDLSLIGERTIWIDCDVIS 118
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRT ++TG +VAL + K + +K VAAIS G + G +VDLD+
Sbjct: 119 ADGGTRTLSVTGGFVALKLAVNKYLKE--KLIFANPIKRKVAAISLGKVYGRLMVDLDFN 176
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
+DS DVD N VM + +I+E+QG++E++ ++ L+++ I +++K+ +D +
Sbjct: 177 DDSKADVDMNIVMDEDHNIIEIQGTSEKSPLKIKELEELVKLSEETIDEIMKIVEDTV 234
>gi|269302800|gb|ACZ32900.1| polyribonucleotide nucleotidyltransferase [Chlamydophila pneumoniae
LPCoLN]
Length = 694
Score = 149 bits (375), Expect = 4e-34, Method: Composition-based stats.
Identities = 46/243 (18%), Positives = 85/243 (34%), Gaps = 18/243 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKH 56
+R GR +R I++ GSCL G+T L TL + +
Sbjct: 314 IRADGRSLTTVRPITIETSYLPRTHGSCLFTRGETQTLAVCTLGSEAMAQRYEDLNGEGL 373
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
+Y P S G + + R+ G + +AL + SA I I+
Sbjct: 374 SKFYLQYFFPPFSVGEVGRIGSPGRREIGHGKL----AEKALSHALPDSATFPYTIRIES 429
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
++ +++G + A++ G +AL D + + +L + D
Sbjct: 430 NITESNGSSSMASVCGGCLALMDAGVPISSPIAGIAMGLILD---------DQGAIILSD 480
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D + G I Q + + L+ AK D++ + +
Sbjct: 481 ISGLEDHLGDMDFKIAGSGKG-ITAFQMDIKVEGITPAIMKKALSQAKQGCNDILNIMNE 539
Query: 237 VIS 239
+S
Sbjct: 540 ALS 542
Score = 89.9 bits (221), Expect = 2e-16, Method: Composition-based stats.
Identities = 33/223 (14%), Positives = 72/223 (32%), Gaps = 26/223 (11%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTAT---LEEKVPMWIRNTKHGWITAEYGMLPRS 69
+ +++ A G+ LV+ G+T + +A L++KV + + G
Sbjct: 16 LVFETGKIARQANGAVLVRSGETCVFASACAVDLDDKVDFLPLRVDYQEKFSSTGKTLGG 75
Query: 70 TGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAA 129
R GR + + R+I R+LR + Q++ A
Sbjct: 76 FIKR------EGRPSEKEILVSRLIDRSLRPSFPYRLMQDVQVLSYVWSYDGQVLPDPLA 129
Query: 130 ITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDA 189
I A + VA + G + +++ E ++ +D
Sbjct: 130 ICAA-------------SAALAISDIPQSNIVAGVRIGCIDNQWVINPTKTELASSTLDL 176
Query: 190 NFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
T++ I+ ++ F+++ + I + K
Sbjct: 177 VLAGTEN-AILMIE--GHCDFFTEEQVLDAIEFGHKHIVTICK 216
>gi|228475082|ref|ZP_04059810.1| polyribonucleotide nucleotidyltransferase [Staphylococcus hominis
SK119]
gi|228271067|gb|EEK12455.1| polyribonucleotide nucleotidyltransferase [Staphylococcus hominis
SK119]
Length = 698
Score = 149 bits (375), Expect = 4e-34, Method: Composition-based stats.
Identities = 45/244 (18%), Positives = 86/244 (35%), Gaps = 18/244 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56
+R GR+ +++R + + A GS L G T L+ T + ++ +
Sbjct: 318 IRPDGRKPDEIRPLESEVGLLPRAHGSGLFTRGQTQALSVLTLGALGDYQLIDGLGPEIE 377
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y S G A R+ G RALR ++ + I I
Sbjct: 378 KRFMHHYNFPNFSVGETGPVRAPGRREIGHGALG----ERALRYIIPDTTEFPYTIRIVS 433
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V++++G + A+I G+ +AL D ++ + V + + D
Sbjct: 434 EVLESNGSSSQASICGSTLALMDAGVPIKAPVAGIAMGLVTRED---------SYTILTD 484
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED+ D+D T G I +Q + +++ L A+ ++
Sbjct: 485 IQGMEDALGDMDFKVAGTKEG-ITAIQMDIKIDGLTREVIEEALEQARQGRLAIMDHMLQ 543
Query: 237 VISN 240
I
Sbjct: 544 TIDQ 547
Score = 112 bits (279), Expect = 5e-23, Method: Composition-based stats.
Identities = 40/235 (17%), Positives = 84/235 (35%), Gaps = 27/235 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKV---PMWIRNTKHGWITAEYGMLP 67
R +++ ++K A G+ LV++GDT +L+TA ++ + + G +P
Sbjct: 15 RSLTIETGQLAKQANGAVLVRYGDTVVLSTAVASKEPRDGDFFPLTVNYEEKMYAAGKIP 74
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R GR G + R+I R +R + QI+ D
Sbjct: 75 GGFKKR------EGRPGDEATLTARLIDRPIRPLFPKGYRHDVQIMNTVLSADPDCSPEM 128
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
AA+ G+ +A +G +A ++ G + G +++ + +
Sbjct: 129 AAMIGSSMA-------------LSVSDIPFQGPIAGVNVGYIDGTYVINPTLEQKEVSRL 175
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNEV 242
D + V+ A ++ + + I L+ Q++V+ +
Sbjct: 176 DLEVAGHKD-AVNMVEAGASE--ITEQEMLEAIFFGHEEIKRLVAFQEEVV-EHI 226
>gi|225011625|ref|ZP_03702063.1| Polyribonucleotide nucleotidyltransferase [Flavobacteria bacterium
MS024-2A]
gi|225004128|gb|EEG42100.1| Polyribonucleotide nucleotidyltransferase [Flavobacteria bacterium
MS024-2A]
Length = 709
Score = 149 bits (375), Expect = 4e-34, Method: Composition-based stats.
Identities = 48/243 (19%), Positives = 81/243 (33%), Gaps = 20/243 (8%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
+RL GR+ +R I GS L G+T L T TL E + +
Sbjct: 317 IRLDGRKTTDIRPIWCEVDYLPSTHGSALFTRGETQALATTTLGTSREANMIDSPSHQGE 376
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P TG S R+ G QR + + + + I
Sbjct: 377 ETFYLHYNFPPFCTGEARPLRGTSRREVGHGNLAQRALKKVMP------DDCPYTVRIVS 430
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V++++G + A + +AL D ++ + + + G A+
Sbjct: 431 EVLESNGSSSMATVCAGTMALMDAGVKIKKPVSGIAMGLITDGDRFAVLSD--------- 481
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T G I Q + D LN A+D ++ +
Sbjct: 482 ILGDEDHLGDMDFKVTGTADG-ITACQMDIKIKGLRFDIMTQALNQARDGRLHILDHLIE 540
Query: 237 VIS 239
I+
Sbjct: 541 TIA 543
Score = 107 bits (267), Expect = 1e-21, Method: Composition-based stats.
Identities = 41/240 (17%), Positives = 76/240 (31%), Gaps = 27/240 (11%)
Query: 7 QENQMREISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEK---VPMWIRNTKHGWITAE 62
+ R I++ ++K A+GS +V+ GD LL TA K V + A
Sbjct: 11 RFEDGRTITIETGKLAKQADGSVVVRMGDCMLLATAVSARKASPVDFLPLTVDYREKFAA 70
Query: 63 YGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQAD 122
G P R R R++ R LR + Q++I +
Sbjct: 71 AGRFPGGFFKR------EARPSDNEVLTMRLVDRVLRPLFPKDYHAETQVMIQLMSHDEN 124
Query: 123 GGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGED 182
L + + + ++ + + G IV+ +
Sbjct: 125 VMPD-------------ALAGLAASTAIQLSDIPFEYPISEVRVARVDGMFIVNPSREQL 171
Query: 183 STIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNEV 242
D+D + + V+ E S++ ++ + I D IK Q ++ V
Sbjct: 172 DASDIDIMI-GASADSVAMVE--GEFDEISEEEMLDAISFGHEAIKDQIKAQ-IALAEAV 227
>gi|148238656|ref|YP_001224043.1| ribonuclease PH [Synechococcus sp. WH 7803]
gi|147847195|emb|CAK22746.1| Ribonuclease PH [Synechococcus sp. WH 7803]
Length = 241
Score = 149 bits (375), Expect = 4e-34, Method: Composition-based stats.
Identities = 100/238 (42%), Positives = 146/238 (61%), Gaps = 4/238 (1%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R GRQ + +R ++ +A S +V+ G T +L + EE VP W R+ GW++A
Sbjct: 6 RKDGRQASALRPFAVEWDPMGFALSSVIVRTGRTAVLCSVCHEEGVPRWRRDQGLGWLSA 65
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
EY +LP ST R +RE + GR+QEIQR+IGR+LR+ + + ALG ++IDCDVIQA
Sbjct: 66 EYRLLPGSTPERQRREW--LKLSGRTQEIQRLIGRSLRAALSMEALGENTLLIDCDVIQA 123
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
D GTRTA++TGAW+AL + + + S + VAA+S G+L G ++DLDY E
Sbjct: 124 DAGTRTASVTGAWLALQNACESLVK--QGVLQSNPVCSQVAAVSVGLLGGEALLDLDYSE 181
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
DS DVD N VM DSG ++E+QG+AE FS+ +L+ A+ + L+ QK+ +
Sbjct: 182 DSQADVDLNVVMNDSGELLELQGTAEGKAFSRQQLNLLLDRAEPGLKQLMDAQKEALR 239
>gi|314936565|ref|ZP_07843912.1| polyribonucleotide nucleotidyltransferase [Staphylococcus hominis
subsp. hominis C80]
gi|313655184|gb|EFS18929.1| polyribonucleotide nucleotidyltransferase [Staphylococcus hominis
subsp. hominis C80]
Length = 698
Score = 149 bits (375), Expect = 4e-34, Method: Composition-based stats.
Identities = 45/244 (18%), Positives = 86/244 (35%), Gaps = 18/244 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56
+R GR+ +++R + + A GS L G T L+ T + ++ +
Sbjct: 318 IRPDGRKPDEIRPLESEVGLLPRAHGSGLFTRGQTQALSVLTLGALGDYQLIDGLGPEIE 377
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y S G A R+ G RALR ++ + I I
Sbjct: 378 KRFMHHYNFPNFSVGETGPVRAPGRREIGHGALG----ERALRYIIPDTTEFPYTIRIVS 433
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V++++G + A+I G+ +AL D ++ + V + + D
Sbjct: 434 EVLESNGSSSQASICGSTLALMDAGVPIKAPVAGIAMGLVTRED---------SYTILTD 484
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED+ D+D T G I +Q + +++ L A+ ++
Sbjct: 485 IQGMEDALGDMDFKVAGTKEG-ITAIQMDIKIDGLTREVIEEALEQARQGRLAIMDHMLQ 543
Query: 237 VISN 240
I
Sbjct: 544 TIDQ 547
Score = 112 bits (279), Expect = 5e-23, Method: Composition-based stats.
Identities = 40/235 (17%), Positives = 84/235 (35%), Gaps = 27/235 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKV---PMWIRNTKHGWITAEYGMLP 67
R +++ ++K A G+ LV++GDT +L+TA ++ + + G +P
Sbjct: 15 RSLTIETGQLAKQANGAVLVRYGDTVVLSTAVASKEPRDGDFFPLTVNYEEKMYAAGKIP 74
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R GR G + R+I R +R + QI+ D
Sbjct: 75 GGFKKR------EGRPGDEATLTARLIDRPIRPLFPKGYRHDVQIMNTVLSADPDCSPEM 128
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
AA+ G+ +A +G +A ++ G + G +++ + +
Sbjct: 129 AAMIGSSMA-------------LSVSDIPFQGPIAGVNVGYIDGTYVINPTLEQKEVSRL 175
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNEV 242
D + V+ A ++ + + I L+ Q++V+ +
Sbjct: 176 DLEVAGHKD-AVNMVEAGASE--ITEQEMLEAIFFGHEEIKRLVAFQEEVV-EHI 226
>gi|307292085|ref|ZP_07571952.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis
TX0411]
gi|306496867|gb|EFM66417.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis
TX0411]
Length = 704
Score = 149 bits (375), Expect = 4e-34, Method: Composition-based stats.
Identities = 44/243 (18%), Positives = 86/243 (35%), Gaps = 18/243 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56
+R GR+ +++R +S + GS L G T L+ T E ++ +
Sbjct: 318 IRPDGRKLDEIRHLSSEVSILPRVHGSGLFTRGQTQALSVCTLAPLGEHQIIDGLGVQDS 377
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y S G+ + + R+ G RAL ++ I +
Sbjct: 378 KRFIHHYNFPQFSVGSTGRAGSPGRREIGHGALG----ERALAQIIPSEEDFPYTIRLVA 433
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V++++G + A+I +AL D ++ + V G + D
Sbjct: 434 EVLESNGSSSQASICAGTLALMDAGVPIKAPVAGIAMGLVSDGE---------NYTILTD 484
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T G I +Q + ++ L+ AK ++++
Sbjct: 485 IQGLEDHLGDMDFKVAGTKDG-ITALQMDIKIQGITEQILTEALDQAKKARMEILEELTT 543
Query: 237 VIS 239
I+
Sbjct: 544 TIA 546
Score = 108 bits (268), Expect = 1e-21, Method: Composition-based stats.
Identities = 43/232 (18%), Positives = 85/232 (36%), Gaps = 26/232 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLL---TTATLEEKVPMWIRNTKHGWITAEYGMLP 67
R + + ++K A G+ LV++GDT +L + + V + + G +P
Sbjct: 14 RPLEVEIGQLAKQANGAVLVRYGDTVVLSAAVASKAAKDVDFFPLTVNYEEKMYAVGKIP 73
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R GR R+ R+I R +R + QI ++ D
Sbjct: 74 GGFIKR------EGRPSERATLTARLIDRPIRPMFSEGFRNEVQITNIVMSVEQDCTPEM 127
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
AA+ G+ +A G +A + G + G +++ + D+
Sbjct: 128 AAMFGSSLA-------------LAISDIPFDGPIAGVDVGRINGEYVLNPTVEQAEQTDI 174
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
+ T I V+ A+ S++ L D I +L+ Q+++++
Sbjct: 175 ELTVAGTKE-AINMVESGAKE--VSEEDMLGALLFGFDAIKELVAFQEEIVA 223
>gi|268679240|ref|YP_003303671.1| polyribonucleotide nucleotidyltransferase [Sulfurospirillum
deleyianum DSM 6946]
gi|268617271|gb|ACZ11636.1| polyribonucleotide nucleotidyltransferase [Sulfurospirillum
deleyianum DSM 6946]
Length = 746
Score = 149 bits (375), Expect = 4e-34, Method: Composition-based stats.
Identities = 55/248 (22%), Positives = 93/248 (37%), Gaps = 23/248 (9%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW-- 58
+R GR+ ++R IS+ + A GSCL G T L ATL + +
Sbjct: 343 VRADGRKLTEIRPISIETNLLPLAHGSCLFTRGQTQALVIATLGNDKDAQMYDLLTEKSS 402
Query: 59 ----ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIII 114
Y S G A R+ G RAL VVD++ L + I +
Sbjct: 403 VSDTFMVNYNFPGFSVGEASPLRAPGRRELGHGNL----ARRALEPVVDINRL--QTIRL 456
Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPI 174
++++++G + A I G +AL +E + V +G A+ ++
Sbjct: 457 VSEILESNGSSSMATICGGALALKAAGVEIEKLVAGIAMGLVFEGDKHAVLSDIM----- 511
Query: 175 VDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
ED D+D T G I +Q + S+D L A++ ++ +
Sbjct: 512 ----GLEDHDGDMDFKVAGTKDG-ITALQMDIKLGGISRDVLKEALYQAREGREHILAIM 566
Query: 235 KDVISNEV 242
+ S E+
Sbjct: 567 EKA-SEEI 573
Score = 58.7 bits (140), Expect = 7e-07, Method: Composition-based stats.
Identities = 36/246 (14%), Positives = 73/246 (29%), Gaps = 59/246 (23%)
Query: 20 VSKYAEGSCLVKFGDTHLLTTA------TLEEKVPMWIRNTKHGWITAEYGMLPRSTGNR 73
V+K A G+ L+K +T +L T E VP+ ++ + + G +P R
Sbjct: 19 VAKQAAGAALLKIKNTVILATVARDDTQVSENFVPLTVQYVEK---SYAVGKIPGGYIKR 75
Query: 74 VKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGA 133
+ G R+I R+LR + QI + A+ +
Sbjct: 76 ------ETKPGDFETLTSRIIDRSLRPLFPKGYAYPTQITVFVLSCDAEVDLQV------ 123
Query: 134 WVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVM 193
+ + + VA + G + G +V+ +D
Sbjct: 124 -------AALNAAGAALYLSDIPVNKAVAGVRIGYVDGAYVVNPSNSLLKKSTLDLYVAG 176
Query: 194 TDSGHIVEVQGSA------------------------------ERATFSQDHFFAMLNLA 223
T ++ ++ + F +D A ++ A
Sbjct: 177 TKE-ELLMIEMRSIASMESVSLPVMAIDPMLDPTLAENMMAKQVINEFPEDAILAAIDTA 235
Query: 224 KDRIAD 229
++ I +
Sbjct: 236 QNAITE 241
>gi|229525300|ref|ZP_04414705.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae bv.
albensis VL426]
gi|229338881|gb|EEO03898.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae bv.
albensis VL426]
Length = 709
Score = 149 bits (375), Expect = 4e-34, Method: Composition-based stats.
Identities = 43/242 (17%), Positives = 91/242 (37%), Gaps = 18/242 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR+++ +R + + V GS L G+T L TATL + ++ + K
Sbjct: 316 RIDGREKDMVRALDVRTGVLPRTHGSALFTRGETQALVTATLGTQRDAQIIDELTGEKKD 375
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P G + R+ G + R + +V+ + + +
Sbjct: 376 HFLLHYNFPPYCVGETGFVGSPKRREIGHGRL----AKRGIAAVMPSPEEFPYTVRVVSE 431
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ G+ +AL D ++ + V + + + +
Sbjct: 432 ITESNGSSSMASVCGSSLALMDAGVPIKASVAGIAMGLVKEENDFVVLSD---------I 482
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T +G + +Q + +++ LN AK ++ +
Sbjct: 483 LGDEDHLGDMDFKVAGTATG-VTALQMDIKIEGITKEIMQIALNQAKGARLHILSVMDQA 541
Query: 238 IS 239
IS
Sbjct: 542 IS 543
Score = 91.4 bits (225), Expect = 1e-16, Method: Composition-based stats.
Identities = 34/228 (14%), Positives = 72/228 (31%), Gaps = 27/228 (11%)
Query: 14 ISLTRRV-SKYAEGSCLVKFGDTHLLTTATLEEKV----PMWIRNTKHGWITAEYGMLPR 68
++L V ++ A + + DT + + +++ + + T G +P
Sbjct: 17 VTLETGVMARQATAAVMATMDDTAVFVSVVGKKEAVVGQDFFPLTVNYQERTYAAGKIPG 76
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
R GR I R+I R +R + Q+I + D
Sbjct: 77 GFFKR------EGRPSEGETLIARLIDRPIRPLFPDGFTNEVQVIATVVSVNPDVQPDII 130
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
++ G A G + A G + G +++ E +D
Sbjct: 131 SMIGTSAA-------------LAISGLPFNGPIGAARVGHIDGQLVLNPSEKELKQSRLD 177
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
T ++ V+ A+ +++ A + D+ +IK +
Sbjct: 178 LVVAGT-DNAVLMVESEAQI--LTEEEMLAAVVFGHDQQQAVIKAINE 222
>gi|148655103|ref|YP_001275308.1| polynucleotide phosphorylase/polyadenylase [Roseiflexus sp. RS-1]
gi|187611283|sp|A5URV5|PNP_ROSS1 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|148567213|gb|ABQ89358.1| Polyribonucleotide nucleotidyltransferase [Roseiflexus sp. RS-1]
Length = 747
Score = 149 bits (375), Expect = 4e-34, Method: Composition-based stats.
Identities = 46/243 (18%), Positives = 85/243 (34%), Gaps = 17/243 (6%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +R IS+ + GS L G T +LT ATL EE+ +
Sbjct: 321 RVDGRGPKDIRPISIEVGLIPRVHGSGLFTRGQTQVLTLATLGSPAEEQRLDDLGIETTK 380
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P STG + + R G R+L +V+ + + +
Sbjct: 381 RYIHHYNFPPFSTGEVRRLGSPRRRDIGHGAL----AERSLLAVLPSKEEFPYTMRLVSE 436
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ ++G + A++ G+ +AL D ++ + + + D+
Sbjct: 437 TLSSNGSSSMASVCGSSLALMDAGVPIKAPVAGVAMGLITGKD--------GRWRVLTDI 488
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T G + +Q + + + A++ ++ V
Sbjct: 489 QGIEDHLGDMDFKVAGTAKG-VTGLQLDIKTTGITYEIMREAFAQAREGRLYILDKMNAV 547
Query: 238 ISN 240
IS
Sbjct: 548 ISE 550
Score = 111 bits (277), Expect = 9e-23, Method: Composition-based stats.
Identities = 43/233 (18%), Positives = 78/233 (33%), Gaps = 27/233 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKV----PMWIRNTKHGWITAEYGML 66
R ++L ++ A G+ +V++GDT LL TA ++ + + G +
Sbjct: 16 RTLTLEAGRFAEQANGAVVVRYGDTMLLATAVASKEPRADADFFPLTVDYEEKMYAAGKI 75
Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
P S R G+ + R+ R LR + QII+ I
Sbjct: 76 PGSFFKR------EGKPTDSAILTARLTDRPLRPLFPEGYRNEVQIIVTTFSIDMVNDPA 129
Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
AI GA A G V A+ G + G ++ + + D
Sbjct: 130 PLAIIGASAA-------------LAISDIPFLGPVGAVQVGYIDGKVQINPEMPDMPNSD 176
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
+D T ++ V+ A+ +D + + LQ +++
Sbjct: 177 LDLVVAGTKD-AVLMVEAGAKE--LPEDLMLEAIIQGHQVCKQICDLQNELVR 226
>gi|269103403|ref|ZP_06156100.1| polyribonucleotide nucleotidyltransferase [Photobacterium damselae
subsp. damselae CIP 102761]
gi|268163301|gb|EEZ41797.1| polyribonucleotide nucleotidyltransferase [Photobacterium damselae
subsp. damselae CIP 102761]
Length = 706
Score = 149 bits (375), Expect = 4e-34, Method: Composition-based stats.
Identities = 45/242 (18%), Positives = 91/242 (37%), Gaps = 18/242 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR+ + +R + + V GS L G+T L TATL + ++ + K
Sbjct: 314 RIDGREVDMVRALDVRTGVLPRTHGSSLFTRGETQALVTATLGTQRDAQIIDELTGEKKD 373
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
+ Y P G + R+ G + R + +V+ + + +
Sbjct: 374 YFLLHYNFPPYCVGETGFVGSPKRREIGHGRL----AKRGIAAVMPSIDEFPYTVRVVSE 429
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ G +AL D ++ + V +G + +
Sbjct: 430 ITESNGSSSMASVCGTSLALMDAGVPIKSSVAGIAMGLVKEGDDFVVLSD---------I 480
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D TD G I +Q + +++ LN AK ++ + +
Sbjct: 481 LGDEDHLGDMDFKVAGTDDG-ITALQMDIKIEGITKEIMQIALNQAKGARMHILSVMDNA 539
Query: 238 IS 239
I+
Sbjct: 540 IN 541
Score = 90.7 bits (223), Expect = 2e-16, Method: Composition-based stats.
Identities = 31/228 (13%), Positives = 67/228 (29%), Gaps = 27/228 (11%)
Query: 14 ISLTRRV-SKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKHGWITAEYGMLPR 68
++L V ++ A + + DT + + + E + + T G +P
Sbjct: 15 VTLETGVMARQATAAVMASMDDTSVFVSVVGKKEAVEGQDFFPLTVNYQERTYAAGKIPG 74
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
R GR R+I R +R + + Q+I + +
Sbjct: 75 GFFKR------EGRPSEGETLTARLIDRPIRPLFPDAFKNEVQVIATVVSVNPNVSPDII 128
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
+ G A G + A G + +++ E +D
Sbjct: 129 TMIGTSAA-------------LAISGIPFNGPIGAARVGFINDQFVLNPSNVELEESRLD 175
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
T ++ V+ +E S++ + D+ +I +
Sbjct: 176 LVVAGTKD-AVLMVE--SEADRLSEEQMLQAVVFGHDQQQTVINAINE 220
>gi|90416139|ref|ZP_01224071.1| polyribonucleotide nucleotidyltransferase [marine gamma
proteobacterium HTCC2207]
gi|90331864|gb|EAS47078.1| polyribonucleotide nucleotidyltransferase [marine gamma
proteobacterium HTCC2207]
Length = 715
Score = 149 bits (375), Expect = 4e-34, Method: Composition-based stats.
Identities = 43/242 (17%), Positives = 87/242 (35%), Gaps = 18/242 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +R I + + GS L G+T + ATL + ++ + +
Sbjct: 314 RIDGRDTTTVRGIDVEVGILPKVHGSSLFTRGETQAIVAATLGSTRDAQMIDALEGRRDD 373
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + S R+ G + R + +V+ + + +
Sbjct: 374 PFMLHYNFPPYSVGEAGRIGFTSRREVGHGRL----ARRGINAVLPSPEEFPYAMRVVSE 429
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ G+ +AL D ++ + V + A+ +
Sbjct: 430 ITESNGSSSMASVCGSSLALMDAGVPLKAPVAGIAMGLVKEDSGYAVLTD---------I 480
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T +G I +Q + +++ L A ++ V
Sbjct: 481 LGDEDHLGDMDFKVAGTAAG-ITALQMDIKIEGITEEIMEIALEQAMQARLHILGEMNKV 539
Query: 238 IS 239
IS
Sbjct: 540 IS 541
Score = 102 bits (254), Expect = 4e-20, Method: Composition-based stats.
Identities = 38/235 (16%), Positives = 75/235 (31%), Gaps = 29/235 (12%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT----AEYGMLPR 68
++L +++ A G+ L DT +L T + + G G +P
Sbjct: 15 VTLETGRIARQATGAVLCSIDDTSVLCTVVGAREAKPGMDFFPLGVHYIEKAYAAGKIPG 74
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
R GR + R+I R +R + Q++ + + A
Sbjct: 75 GFFKR------EGRPNEKETLTSRLIDRPIRPLFPNGFKNEVQVVCTVMSAEKNIDPDIA 128
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY-PIVDLDYGEDSTIDV 187
A+ G A G V G +++ Y E + +
Sbjct: 129 AMIGTSAA-------------LSISGIPFNGPVGGARVGYTDEQGYLLNPTYSELADSAL 175
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNEV 242
D T ++ V+ +E + S+D + A + +I + + ++ EV
Sbjct: 176 DMVVAGTKD-AVLMVE--SEASELSEDIMLGGVLFAHQEMQSVITVIAE-LAAEV 226
>gi|15640667|ref|NP_230296.1| polynucleotide phosphorylase/polyadenylase [Vibrio cholerae O1
biovar El Tor str. N16961]
gi|121587861|ref|ZP_01677618.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae 2740-80]
gi|153802011|ref|ZP_01956597.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae MZO-3]
gi|153818691|ref|ZP_01971358.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae NCTC
8457]
gi|153822539|ref|ZP_01975206.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae B33]
gi|227080828|ref|YP_002809379.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae M66-2]
gi|229505731|ref|ZP_04395241.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae BX
330286]
gi|229509236|ref|ZP_04398721.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae B33]
gi|229519556|ref|ZP_04408999.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae RC9]
gi|229608842|ref|YP_002879490.1| polynucleotide phosphorylase/polyadenylase [Vibrio cholerae
MJ-1236]
gi|254850881|ref|ZP_05240231.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae MO10]
gi|255744136|ref|ZP_05418089.1| polyribonucleotide nucleotidyltransferase [Vibrio cholera CIRS 101]
gi|262156112|ref|ZP_06029231.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae INDRE
91/1]
gi|298500763|ref|ZP_07010566.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae MAK 757]
gi|81545361|sp|Q9KU76|PNP_VIBCH RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|254782745|sp|C3LSQ2|PNP_VIBCM RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|9655083|gb|AAF93813.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae O1
biovar El Tor str. N16961]
gi|121547897|gb|EAX57981.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae 2740-80]
gi|124122470|gb|EAY41213.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae MZO-3]
gi|126510771|gb|EAZ73365.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae NCTC
8457]
gi|126519957|gb|EAZ77180.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae B33]
gi|227008716|gb|ACP04928.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae M66-2]
gi|229344245|gb|EEO09220.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae RC9]
gi|229353808|gb|EEO18744.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae B33]
gi|229357954|gb|EEO22871.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae BX
330286]
gi|229371497|gb|ACQ61920.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae MJ-1236]
gi|254846586|gb|EET25000.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae MO10]
gi|255738076|gb|EET93468.1| polyribonucleotide nucleotidyltransferase [Vibrio cholera CIRS 101]
gi|262030148|gb|EEY48793.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae INDRE
91/1]
gi|297540544|gb|EFH76602.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae MAK 757]
Length = 709
Score = 149 bits (375), Expect = 4e-34, Method: Composition-based stats.
Identities = 43/242 (17%), Positives = 91/242 (37%), Gaps = 18/242 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR+++ +R + + V GS L G+T L TATL + ++ + K
Sbjct: 316 RIDGREKDMVRALDVRTGVLPRTHGSALFTRGETQALVTATLGTQRDAQIIDELTGEKKD 375
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P G + R+ G + R + +V+ + + +
Sbjct: 376 HFLLHYNFPPYCVGETGFVGSPKRREIGHGRL----AKRGIAAVMPSPEEFPYTVRVVSE 431
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ G+ +AL D ++ + V + + + +
Sbjct: 432 ITESNGSSSMASVCGSSLALMDAGVPIKASVAGIAMGLVKEENDFVVLSD---------I 482
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T +G + +Q + +++ LN AK ++ +
Sbjct: 483 LGDEDHLGDMDFKVAGTATG-VTALQMDIKIEGITKEIMQIALNQAKGARLHILSVMDQA 541
Query: 238 IS 239
IS
Sbjct: 542 IS 543
Score = 91.4 bits (225), Expect = 1e-16, Method: Composition-based stats.
Identities = 34/228 (14%), Positives = 72/228 (31%), Gaps = 27/228 (11%)
Query: 14 ISLTRRV-SKYAEGSCLVKFGDTHLLTTATLEEKV----PMWIRNTKHGWITAEYGMLPR 68
++L V ++ A + + DT + + +++ + + T G +P
Sbjct: 17 VTLETGVMARQATAAVMATMDDTAVFVSVVGKKEAVVGQDFFPLTVNYQERTYAAGKIPG 76
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
R GR I R+I R +R + Q+I + D
Sbjct: 77 GFFKR------EGRPSEGETLIARLIDRPIRPLFPDGFTNEVQVIATVVSVNPDVQPDII 130
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
++ G A G + A G + G +++ E +D
Sbjct: 131 SMIGTSAA-------------LAISGLPFNGPIGAARVGHIDGQLVLNPSEKELKQSRLD 177
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
T ++ V+ A+ +++ A + D+ +IK +
Sbjct: 178 LVVAGT-DNAVLMVESEAQI--LTEEEMLAAVVFGHDQQQAVIKAINE 222
>gi|320540181|ref|ZP_08039836.1| polynucleotide phosphorylase/polyadenylase [Serratia symbiotica
str. Tucson]
gi|320029847|gb|EFW11871.1| polynucleotide phosphorylase/polyadenylase [Serratia symbiotica
str. Tucson]
Length = 716
Score = 148 bits (374), Expect = 4e-34, Method: Composition-based stats.
Identities = 44/242 (18%), Positives = 90/242 (37%), Gaps = 18/242 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR+++ +R + + V GS L G+T L TATL + + + K
Sbjct: 325 RIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQNLDELMGEKTD 384
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + R+ G + R + +++ + + +
Sbjct: 385 SFLFHYNFPPYSVGETGMVGSPKRREIGHGRL----AKRGVLAMMPKLEDFPYTVRVVSE 440
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ GA +AL D ++ + V + + +
Sbjct: 441 ITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEADNFVVLSD---------I 491
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D + G I +Q + +++ LN AK ++ + +
Sbjct: 492 LGDEDHLGDMDFKVAGSRDG-ITALQMDIKIEGITREIMQVALNQAKGARLHILSVMEQA 550
Query: 238 IS 239
IS
Sbjct: 551 IS 552
Score = 94.5 bits (233), Expect = 1e-17, Method: Composition-based stats.
Identities = 36/232 (15%), Positives = 76/232 (32%), Gaps = 27/232 (11%)
Query: 14 ISLTRRV-SKYAEGSCLVKFGDTHLLTTATLEEKVPM----WIRNTKHGWITAEYGMLPR 68
+++ + ++ A + +V DT + T ++K + + T G +P
Sbjct: 26 VTIETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQSFFPLTVNYQERTYAAGRIPG 85
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
S R GR R+I R +R + + L Q+I +
Sbjct: 86 SFFRR------EGRPSEGETLTSRLIDRPIRPLFPDNFLNEVQVIATVVSVNPQVNPDIV 139
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+ GA A G + A G + +++ E +D
Sbjct: 140 AMIGASAA-------------LSLSGIPFNGPIGAARVGYINDQYVLNPTTDELKISSLD 186
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
T +G ++ V+ +E S+D + + +I+ +++
Sbjct: 187 LVVAGT-AGAVLMVE--SEADVLSEDQMLGAVVFGHQQQQVVIESINSLVAE 235
>gi|56751675|ref|YP_172376.1| polynucleotide phosphorylase/polyadenylase [Synechococcus elongatus
PCC 6301]
gi|81561823|sp|Q5N1G4|PNP_SYNP6 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|56686634|dbj|BAD79856.1| polyribonucleotide nucleotidyltransferase [Synechococcus elongatus
PCC 6301]
Length = 716
Score = 148 bits (374), Expect = 4e-34, Method: Composition-based stats.
Identities = 49/244 (20%), Positives = 90/244 (36%), Gaps = 19/244 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSK-YAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTK 55
+R+ GR+ +Q+R IS + GS L + G T +L+ AT + + +
Sbjct: 322 VRVDGRKLDQVRPISSQVGLLPPRVHGSGLFQRGLTQVLSIATLGTPGDAQELDDLHPDT 381
Query: 56 HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115
Y M P S G + R+ G RAL V+ I +
Sbjct: 382 QKRYLHHYNMPPYSVGETRPMRSPGRREIGHGAL----AERALLPVLPSKEEFPYVIRVV 437
Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIV 175
+V+ ++G T ++ G+ +AL D ++ + + + +G +
Sbjct: 438 SEVLSSNGSTSMGSVCGSTLALMDAGVPIKKPVSGAAMGLIREGDE---------YRVLT 488
Query: 176 DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
D+ ED D+D TD G I +Q + + +N AK ++
Sbjct: 489 DIQGIEDFLGDMDFKVAGTDQG-ITALQMDMKIHGLPLEIIADAINQAKPARLHILNKML 547
Query: 236 DVIS 239
+ I+
Sbjct: 548 EAIA 551
Score = 108 bits (268), Expect = 1e-21, Method: Composition-based stats.
Identities = 47/235 (20%), Positives = 83/235 (35%), Gaps = 26/235 (11%)
Query: 10 QMREISLTRR-VSKYAEGSCLVKFGDTHLLTTA---TLEEKVPMWIRNTKHGWITAEYGM 65
R+I L + A GS L+ GDT +L A T E + + G
Sbjct: 11 DGRDIRLELGLFAPQAGGSVLISSGDTAVLVAATRSTAREGIDFLPLTVDYEERMYAAGR 70
Query: 66 LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125
+P R GR R+ R+I R LR + Q++ +
Sbjct: 71 IPGGFLRR------EGRPPERATLTSRLIDRPLRPLFPSWLRDDLQVVATTLSMDETVPP 124
Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185
A TGA +A +AA+ G++ I++ Y E
Sbjct: 125 DVLAATGASIATLVAKIPFYG-------------PMAAVRVGLVGDDFIINPTYREIEKG 171
Query: 186 DVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
D+D T +G ++ V+ A + + ++ + + +LIK Q+ +++
Sbjct: 172 DLDLVVAGTPAG-VIMVEAGANQ--LPEADVIEAIDFGYEAVQELIKAQQSLLAE 223
>gi|315028235|gb|EFT40167.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis
TX4000]
Length = 704
Score = 148 bits (374), Expect = 4e-34, Method: Composition-based stats.
Identities = 44/243 (18%), Positives = 86/243 (35%), Gaps = 18/243 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56
+R GR+ +++R +S + GS L G T L+ T E ++ +
Sbjct: 318 IRPDGRKLDEIRHLSSEVSILPRVHGSGLFTRGQTQALSVCTLAPLGEHQIIDGLGVQDS 377
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y S G+ + + R+ G RAL ++ I +
Sbjct: 378 KRFIHHYNFPQFSVGSTGRAGSPGRREIGHGALG----ERALAQIIPSEEDFPYTIRLVA 433
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V++++G + A+I +AL D ++ + V G + D
Sbjct: 434 EVLESNGSSSQASICSGTLALMDAGVPIKAPVAGIAMGLVSDGE---------NYTILTD 484
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T G I +Q + ++ L+ AK ++++
Sbjct: 485 IQGLEDHLGDMDFKVAGTKDG-ITALQMDIKIQGITEQILTEALDQAKKARMEILEELTT 543
Query: 237 VIS 239
I+
Sbjct: 544 TIA 546
Score = 117 bits (292), Expect = 2e-24, Method: Composition-based stats.
Identities = 44/232 (18%), Positives = 87/232 (37%), Gaps = 26/232 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEK---VPMWIRNTKHGWITAEYGMLP 67
R + + ++K A G+ LV++GDT +L+ A ++ V + + G +P
Sbjct: 14 RPLEVEIGQLAKQANGAVLVRYGDTVVLSAAVASKEAKDVDFFPLTVNYEEKMYAVGKIP 73
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R GR R+ R+I R +R + QI ++ D
Sbjct: 74 GGFIKR------EGRPSERATLTARLIDRPIRPMFSEGFRNEVQITNIVMSVEQDCTPEM 127
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
AA+ G+ +A G +A + G + G +++ + D+
Sbjct: 128 AAMFGSSLA-------------LAISDIPFDGPIAGVDVGRINGEYVLNPTVEQAEQTDI 174
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
+ T I V+ A+ S++ L D I +L+ Q+++++
Sbjct: 175 ELTVAGTKE-AINMVESGAKE--VSEEDMLGALLFGFDAIKELVAFQEEIVA 223
>gi|88797627|ref|ZP_01113216.1| Polyribonucleotide nucleotidyltransferase (polynucleotide
phosphorylase) [Reinekea sp. MED297]
gi|88779799|gb|EAR10985.1| Polyribonucleotide nucleotidyltransferase (polynucleotide
phosphorylase) [Reinekea sp. MED297]
Length = 706
Score = 148 bits (374), Expect = 4e-34, Method: Composition-based stats.
Identities = 46/242 (19%), Positives = 92/242 (38%), Gaps = 18/242 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +R+I + V A GS L G+T L T TL + K+ + T
Sbjct: 319 RIDGRDGKTVRDIKVEVGVLPGAHGSALFTRGETQALVTTTLGTLRDGKMEDMLTGTITD 378
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + V R+ G + R + +++ + + + +
Sbjct: 379 NFMLHYNFPPFSVGEAGRIGGVGRREIGHGRL----AKRGVLAMMPNTDDFPYTVRVVSE 434
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ GA +A+ D ++ + V +G + +
Sbjct: 435 ITESNGSSSMASVCGASLAMMDAGVPVKKPVAGIAMGLVKEGDKFTVLTD---------I 485
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T++G + +Q + +++ L A D +++ V
Sbjct: 486 LGDEDHLGDMDFKVAGTENG-VTALQMDIKIQGITEEIMEIALGQAMDARLHILREMAQV 544
Query: 238 IS 239
I
Sbjct: 545 IG 546
Score = 98.0 bits (242), Expect = 1e-18, Method: Composition-based stats.
Identities = 36/236 (15%), Positives = 72/236 (30%), Gaps = 29/236 (12%)
Query: 13 EISLTRR-VSKYAEGSCLVKF-GDTHLLTTATLEEKVPMWIRNT----KHGWITAEYGML 66
++++ V++ A GS + GDT +L T ++ V + G +
Sbjct: 17 DVTIETGRVARQATGSAICTMNGDTVVLATVVAKDSVSPGQDFFPLSVHYQEKFYSVGRI 76
Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
P R GR + R+I R +R + + Q+II+
Sbjct: 77 PGGYLKR------EGRPSEKETLTSRLIDRPIRPLFPKGFMNEVQVIINVLSANKTDDPD 130
Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC-GYPIVDLDYGEDSTI 185
AA+ A G + A G +++ + + T
Sbjct: 131 IAAMLATSAA-------------LAVSGVPFNGPIGAARVGYTDAEGYLLNPTFEQLETS 177
Query: 186 DVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
+D T ++ V+ A+ S+D + A + + +
Sbjct: 178 RLDMVVAGTQD-AVLMVESEAQE--LSEDQMLGAVLFAHQEFQVAVSAIAEFAAEH 230
>gi|325285569|ref|YP_004261359.1| polyribonucleotide nucleotidyltransferase [Cellulophaga lytica DSM
7489]
gi|324321023|gb|ADY28488.1| Polyribonucleotide nucleotidyltransferase [Cellulophaga lytica DSM
7489]
Length = 747
Score = 148 bits (374), Expect = 4e-34, Method: Composition-based stats.
Identities = 48/243 (19%), Positives = 83/243 (34%), Gaps = 18/243 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
+RL GR+ +++R I GS + G+T L T TL E
Sbjct: 317 LRLDGRKTDEIRPIWCEVDYLPSTHGSSIFTRGETQALATVTLGTSREANQIDMPSYEGE 376
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P STG S R+ G RAL+++V + +
Sbjct: 377 ERFYLHYNFPPFSTGEARPLRGTSRREVGHGNL----AQRALKNMVPAD--CPYTVRVVS 430
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V++++G + A + +AL D + + + + + D
Sbjct: 431 EVLESNGSSSMATVCAGTMALMDAGVQLIKPVSGIAMGLISDAETG-------KYAVLSD 483
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T+ G I Q + S + L A++ ++ D
Sbjct: 484 ILGDEDHLGDMDFKVTGTEDG-ITACQMDIKVKGLSYEILVNALKQAREGRLHILGKLTD 542
Query: 237 VIS 239
IS
Sbjct: 543 TIS 545
Score = 102 bits (255), Expect = 3e-20, Method: Composition-based stats.
Identities = 36/232 (15%), Positives = 69/232 (29%), Gaps = 26/232 (11%)
Query: 7 QENQMREISLTRR-VSKYAEGSCLVKFGDTHLLTTA---TLEEKVPMWIRNTKHGWITAE 62
REIS+ ++K A GS +V+ G+ LL T + V + A
Sbjct: 11 DLGDGREISIETGKLAKQAHGSVVVQSGNCMLLCTLVSNYKQSDVDFLPLTVDYREKFAS 70
Query: 63 YGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQAD 122
G P R R R++ R LR + Q++I +
Sbjct: 71 AGRYPGGFFKR------EARPSDGEVLTMRLVDRVLRPLFPKDYHAETQVMIQLMSHDEN 124
Query: 123 GGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGED 182
+ + + + ++ G + G I++ +
Sbjct: 125 VMPDA-------------MAGLAASAAIQLSDVPFETPISEARVGRINGEFIINPTRAQL 171
Query: 183 STIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
D+D + ++ V+ E S++ + A + I Q
Sbjct: 172 EESDIDMMI-GASADSVMMVE--GEMLEISEEEMAEAIKFAHEAIKVQCAAQ 220
>gi|81301249|ref|YP_401457.1| polynucleotide phosphorylase/polyadenylase [Synechococcus elongatus
PCC 7942]
gi|123556249|sp|Q31KE9|PNP_SYNE7 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|81170130|gb|ABB58470.1| Polyribonucleotide nucleotidyltransferase [Synechococcus elongatus
PCC 7942]
Length = 716
Score = 148 bits (374), Expect = 4e-34, Method: Composition-based stats.
Identities = 49/244 (20%), Positives = 90/244 (36%), Gaps = 19/244 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSK-YAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTK 55
+R+ GR+ +Q+R IS + GS L + G T +L+ AT + + +
Sbjct: 322 VRVDGRKLDQVRPISSQVGLLPPRVHGSGLFQRGLTQVLSIATLGTPGDAQELDDLHPDT 381
Query: 56 HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115
Y M P S G + R+ G RAL V+ I +
Sbjct: 382 QKRYLHHYNMPPYSVGETRPMRSPGRREIGHGAL----AERALLPVLPSKEEFPYVIRVV 437
Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIV 175
+V+ ++G T ++ G+ +AL D ++ + + + +G +
Sbjct: 438 SEVLSSNGSTSMGSVCGSTLALMDAGVPIKKPVSGAAMGLIREGDE---------YRVLT 488
Query: 176 DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
D+ ED D+D TD G I +Q + + +N AK ++
Sbjct: 489 DIQGIEDFLGDMDFKVAGTDQG-ITALQMDMKIHGLPLEIIADAINQAKPARLHILNKML 547
Query: 236 DVIS 239
+ I+
Sbjct: 548 EAIA 551
Score = 108 bits (270), Expect = 6e-22, Method: Composition-based stats.
Identities = 47/235 (20%), Positives = 84/235 (35%), Gaps = 26/235 (11%)
Query: 10 QMREISLTRR-VSKYAEGSCLVKFGDTHLLTTA---TLEEKVPMWIRNTKHGWITAEYGM 65
R+I L + A GS L+ GDT +L A T E + + G
Sbjct: 11 DGRDIRLELGLFAPQAGGSVLISSGDTAVLVAATRSTAREGIDFLPLTVDYEERMYAAGR 70
Query: 66 LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125
+P R GR R+ R+I R LR + Q++ +
Sbjct: 71 IPGGFLRR------EGRPPERATLTSRLIDRPLRPLFPSWLRDDLQVVATTLSMDETVPP 124
Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185
A+TGA +A +AA+ G++ I++ Y E
Sbjct: 125 DVLAVTGASIATLVAKIPFYG-------------PMAAVRVGLVGDDFIINPTYREIEKG 171
Query: 186 DVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
D+D T +G ++ V+ A + + ++ + + +LIK Q+ +++
Sbjct: 172 DLDLVVAGTPAG-VIMVEAGANQ--LPEADVIEAIDFGYEAVQELIKAQQSLLAE 223
>gi|315639994|ref|ZP_07895121.1| polyribonucleotide nucleotidyltransferase [Enterococcus italicus
DSM 15952]
gi|315484256|gb|EFU74725.1| polyribonucleotide nucleotidyltransferase [Enterococcus italicus
DSM 15952]
Length = 707
Score = 148 bits (374), Expect = 5e-34, Method: Composition-based stats.
Identities = 46/244 (18%), Positives = 86/244 (35%), Gaps = 18/244 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56
+R GRQ +++R +S + GS L G T L+T T E ++ + +
Sbjct: 319 IRPDGRQLDEIRALSSEVGLLPRVHGSGLFTRGQTQALSTCTLAPLGEHQIIDGLGVEES 378
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y S G+ + + R+ G RAL ++ I +
Sbjct: 379 KRFIHHYNFPQFSVGSTGRAGSPGRREIGHGALG----ERALAQIIPDETDFPYTIRLVA 434
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V++++G + A+I +AL D ++ + V G + D
Sbjct: 435 EVLESNGSSSQASICAGTLALMDAGVPIKAPVAGIAMGLVSDGE---------NYTILTD 485
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T G I +Q + ++ L AK ++++
Sbjct: 486 IQGLEDHLGDMDFKVAGTKDG-ITALQMDIKIQGITEQILREALAQAKKARMEILEELTA 544
Query: 237 VISN 240
I
Sbjct: 545 TIDQ 548
Score = 118 bits (295), Expect = 8e-25, Method: Composition-based stats.
Identities = 43/232 (18%), Positives = 85/232 (36%), Gaps = 26/232 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEK---VPMWIRNTKHGWITAEYGMLP 67
R +S+ ++K A G+ LV++GDT +L+ A ++ + + G +P
Sbjct: 13 RPLSVEIGQLAKQANGAVLVRYGDTVVLSAAVASKEAKDTDFFPLTINYEEKMYAVGKIP 72
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R GR + R+I R +R + Q+ ++ D
Sbjct: 73 GGFIKR------EGRPSTDATLTARLIDRPIRPMFAEGFRNEVQVTNIVMSVEQDCSPAM 126
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
AA+ G+ +A G +A + G + G +++ ++ D+
Sbjct: 127 AAMLGSSLA-------------LSISDIPFDGPIAGVDVGRVNGEYVLNPTVEQNEESDI 173
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
T I V+ A+ S+ L + I +L+ QK+V++
Sbjct: 174 HLTVAGTAQ-AINMVESGAKE--VSEADMLGALLFGHEAIQELVAFQKEVVA 222
>gi|331006254|ref|ZP_08329574.1| Polyribonucleotide nucleotidyltransferase [gamma proteobacterium
IMCC1989]
gi|330419943|gb|EGG94289.1| Polyribonucleotide nucleotidyltransferase [gamma proteobacterium
IMCC1989]
Length = 742
Score = 148 bits (374), Expect = 5e-34, Method: Composition-based stats.
Identities = 46/242 (19%), Positives = 88/242 (36%), Gaps = 18/242 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +R I + V A GS L G+T + ATL + ++ + +
Sbjct: 315 RIDGRDTTTVRGIDVEVGVLNKAHGSSLFTRGETQAIVVATLGNARDSQIIDALEGERRD 374
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y S G + + S R+ G + R + +V+ I I +
Sbjct: 375 PFMLHYNFPSYSVGECGRMGSTSRREIGHGRL----ARRGVAAVLPTQEDFPYTIRIVSE 430
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ GA +A+ D ++ + V + A+ +
Sbjct: 431 ITESNGSSSMASVCGASLAMMDAGVPLKAPVAGIAMGLVKEESGFAVLTD---------I 481
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T +G I +Q + +++ L A ++ V
Sbjct: 482 LGDEDHLGDMDFKVAGTAAG-ITALQMDIKIEGITEEIMEIALGQALQARLHILAEMNKV 540
Query: 238 IS 239
IS
Sbjct: 541 IS 542
Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats.
Identities = 35/229 (15%), Positives = 72/229 (31%), Gaps = 28/229 (12%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGMLPR 68
++L V++ A G+ LV G T +L T EE + + + G +P
Sbjct: 15 VTLETGRVARQATGAVLVSIGKTQVLCTVVGAKQAEEGRGFFPLSVHYVEKAYAAGKIPG 74
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
R R + R+I R +R + + Q++ + D A
Sbjct: 75 GFFKR------EARPSEKETLTSRLIDRPIRPLFPNGFMNEVQVVCMVVSAENDVDPDIA 128
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG-YPIVDLDYGEDSTIDV 187
A+ G A G + G +++ Y + ++
Sbjct: 129 AMIGTSAA-------------LSISGIPFNGPIGGARVGYTQEAGYVLNPSYSALAESEL 175
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
D T ++ V+ +E + +D + A +++ +
Sbjct: 176 DMVVAGTKD-AVLMVE--SEASELPEDIMLGAVLFAHQECQAVVQAITE 221
>gi|116748674|ref|YP_845361.1| polynucleotide phosphorylase/polyadenylase [Syntrophobacter
fumaroxidans MPOB]
gi|187611325|sp|A0LHM4|PNP_SYNFM RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|116697738|gb|ABK16926.1| Polyribonucleotide nucleotidyltransferase [Syntrophobacter
fumaroxidans MPOB]
Length = 699
Score = 148 bits (374), Expect = 5e-34, Method: Composition-based stats.
Identities = 44/242 (18%), Positives = 90/242 (37%), Gaps = 18/242 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR+ +++R I++ V GS + G+T +L TL +E+ +
Sbjct: 313 RIDGRRFDEIRPINIQAGVLPRTHGSAVFTRGETQVLAVVTLGSSSDEQKIEALAGETFK 372
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y S G R+ G R++++V+ I + +
Sbjct: 373 SFMLHYNFPAFSVGEVRPLRGPGRREIGHGAL----AERSVKAVLPRDGEFPYTIRVVSE 428
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
V++++G + A + G+ +AL D + + + V +G + +
Sbjct: 429 VLESNGSSSMATVCGSSLALMDAGVPITEPVGGIAMGLVKEGDKIIVLSD---------I 479
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D ++ G I +Q + A + L A+ ++ K+V
Sbjct: 480 LGDEDHLGDMDFKVTGSERG-ITAIQMDVKIAGIDRGIMQRALEQARAGRIFILGKMKEV 538
Query: 238 IS 239
+S
Sbjct: 539 LS 540
Score = 109 bits (271), Expect = 4e-22, Method: Composition-based stats.
Identities = 46/230 (20%), Positives = 86/230 (37%), Gaps = 26/230 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRN----TKHGWITAEYGML 66
R + +++ A GS L+++GDT +L AT E+++ I + ++ G +
Sbjct: 12 RPMVFEAGEIARQAGGSVLMRYGDTVVLIAATKEDRIREGIDFVPLMVDYQEMSYAAGRI 71
Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
P R GR + R+I R +R + Q++ + +
Sbjct: 72 PGGFFRR-----EIGRPSEKETLTSRLIDRPIRPLFPKKYCYETQVVATVLSVDMENEPD 126
Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
A+TGA ALH +G VAA+ G + G ++ E D
Sbjct: 127 VVALTGASTALH-------------ISPVPFQGPVAAVRVGRINGSFAINPSAKELLESD 173
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
++ + +V V+G A S+D ++ I ++ Q +
Sbjct: 174 LNVVVAGSRD-AVVMVEGGA--DFVSEDDLVDAIDFGHKAILPILDAQDE 220
>gi|291296202|ref|YP_003507600.1| 3' exoribonuclease [Meiothermus ruber DSM 1279]
gi|290471161|gb|ADD28580.1| 3' exoribonuclease [Meiothermus ruber DSM 1279]
Length = 714
Score = 148 bits (374), Expect = 5e-34, Method: Composition-based stats.
Identities = 49/244 (20%), Positives = 87/244 (35%), Gaps = 18/244 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT----KHG 57
R GR Q+R I + V GS + G+T +L TL + +
Sbjct: 325 RADGRTPTQVRPIWIESNVLPKTHGSAIFSRGETQVLGVVTLGTGRDAQLVDDLGIETED 384
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P STG + VS R+ G R LR+V+ I + D
Sbjct: 385 PFLVHYNFPPYSTGEVRRLRGVSRREVGHGNL----AKRGLRAVLPSREEFPYTIRVVGD 440
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
V++++G + A + +AL D ++ + V +G A + +
Sbjct: 441 VLESNGSSSMATVCAGCLALLDAGVPLKKHVAGVAMGLVKEGEQAVVLTD---------I 491
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED+ D+D T G + +Q + + + A L A++ ++ L +
Sbjct: 492 LGLEDALGDMDFKVTGTRDG-VTALQMDIKIKGLTPEIMRAALYQAREARLHILSLMERA 550
Query: 238 ISNE 241
+
Sbjct: 551 VPTH 554
Score = 108 bits (268), Expect = 1e-21, Method: Composition-based stats.
Identities = 38/229 (16%), Positives = 80/229 (34%), Gaps = 28/229 (12%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTAT---LEEKVPMWIRNTKHGWITAEYGMLP 67
R +++ +K+ GS V +G+T ++ TA + + G +P
Sbjct: 20 RTLTIETGKYAKHVSGSVWVTYGETVVMATAQASDAPIQADFLPLTVEFEERHYAVGRIP 79
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
S R GR G ++ R+ R +R + Q+++ +
Sbjct: 80 GSFMRR------EGRPGEKAILSARLTDRPIRPLFPKGFRHEVQVLLTVLSADQENTPDI 133
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
+ + +G +A++ G+ G +++ EDS +D+
Sbjct: 134 LG-------------PIAASAALMLSDIPWEGPIASVRVGLQNGRLVLNPVAQEDSQLDL 180
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
V I+ V+ A+ S+D L A + +++LQ+
Sbjct: 181 ---VVAGSKEAIIMVEAGAQE--VSEDRLVEALEFAHRAMQPILELQEQ 224
>gi|224534158|ref|ZP_03674738.1| polyribonucleotide nucleotidyltransferase [Borrelia spielmanii
A14S]
gi|224514583|gb|EEF84897.1| polyribonucleotide nucleotidyltransferase [Borrelia spielmanii
A14S]
Length = 724
Score = 148 bits (374), Expect = 5e-34, Method: Composition-based stats.
Identities = 46/244 (18%), Positives = 87/244 (35%), Gaps = 19/244 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
+R GR N++R+I + GS L G+T L TL +E++ I K
Sbjct: 315 IRTDGRTPNEIRDILAEVDILSRTHGSALFTRGETQALAVTTLGTSIDEQIMDDIDGDKR 374
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P S G + R+ G RAL S+V I +
Sbjct: 375 LNFMLHYNFPPFSVGETGRLMTGR-REIGHGHL----AQRALESMVPGKNDFPYTIRVVS 429
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
++++++G + A + ++L ++ + + +G +
Sbjct: 430 EILESNGSSSMATVCAGSMSLMSAGVPVKRQVAGIAMGLISEGDKYVVLSD--------- 480
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T++G I Q + ++ L A+ ++ +
Sbjct: 481 ILGEEDHLGDMDFKVAGTENG-ITGFQMDIKIENVTKHLMRDALEQARIGRIHILSIMNS 539
Query: 237 VISN 240
+ISN
Sbjct: 540 IISN 543
Score = 109 bits (272), Expect = 3e-22, Method: Composition-based stats.
Identities = 45/239 (18%), Positives = 80/239 (33%), Gaps = 32/239 (13%)
Query: 5 GRQENQMREISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----HGWI 59
GR E+ ++K A GS L +G + +L T + +
Sbjct: 10 GRD-----ELVFETGFIAKQANGSVLATYGGSSVLATVCCSSNAREDLDFVPLSVEYNEK 64
Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119
G +P R G+ + + R+I R +R + D Q+I
Sbjct: 65 YYAAGKIPGGFIKR------EGKPKDKEILVSRLIDRPMRPLFDKRFGREIQVIPTTLAT 118
Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179
+ A+ A+ G +AA+ L G IV+ +
Sbjct: 119 DQLNPPDIVGMNAAFTAVF-------------LSDIPFNGPIAAVRMVYLNGKFIVNPSF 165
Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
E D+D + +G I V+G A S+D + ++ A + I + QK+ +
Sbjct: 166 EEIHDSDLDIVVAGSLNG-ITMVEGGANE--VSEDILLSAIDSAHEYIKQICNAQKEFL 221
>gi|127513750|ref|YP_001094947.1| polynucleotide phosphorylase/polyadenylase [Shewanella loihica
PV-4]
gi|187611300|sp|A3QGU0|PNP_SHELP RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|126639045|gb|ABO24688.1| Polyribonucleotide nucleotidyltransferase [Shewanella loihica PV-4]
Length = 700
Score = 148 bits (374), Expect = 5e-34, Method: Composition-based stats.
Identities = 42/240 (17%), Positives = 88/240 (36%), Gaps = 10/240 (4%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R+ GR+ + +R +S+ V GS L G+T L T TL + ++ G T+
Sbjct: 314 RIDGREPDMVRALSVMAGVLPRTHGSALFTRGETQALVTCTLGTERDAQKIDSIMGEQTS 373
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
+ + V + G R ++ R + +V+ + I + ++ ++
Sbjct: 374 RFMLHYNFPPYSVGETGMVGSPKRREIGHGKLAWRGIHAVMPTAEEFPYSIRVVSEITES 433
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
+G + A++ G +AL D ++ + V +G + + E
Sbjct: 434 NGSSSMASVCGTSLALMDAGVPIKTSVAGIAMGLVKEGDDFVVLSD---------ILGDE 484
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
D D+D T G + +Q + +++ L A ++ + IS
Sbjct: 485 DHLGDMDFKVAGTRDG-VTALQMDIKIEGITKEIMQIALQQAYGARVHILNVMDQAISGH 543
Score = 98.8 bits (244), Expect = 6e-19, Method: Composition-based stats.
Identities = 36/234 (15%), Positives = 78/234 (33%), Gaps = 28/234 (11%)
Query: 14 ISLTRRV-SKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGMLPR 68
++L V ++ A+ + L GDT +L T E + + T G +P
Sbjct: 15 VTLETGVIARQADAAVLASMGDTTVLVTVVGKKAEEPGRDFFPLTVNYQEKTYAAGKIPG 74
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
R GR R+I R +R + Q+II + +
Sbjct: 75 GFFKR------EGRPSEGETLTARLIDRPIRPLFPNGFKNEVQVIITVVSVDPEISPEVI 128
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
++ G A G + + G + G I++ + ++
Sbjct: 129 SMIGTSAA-------------LSISGIPFNGPLGSARVGYVDGEYILNPTVSQLENSQLE 175
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNEV 242
+ T++ ++ V+ +E ++ + ++ +I+ K+ + EV
Sbjct: 176 LSVAGTEN-AVLMVE--SEADALPEEVMLGAVVYGHEQQQVVIQAIKE-LKAEV 225
>gi|289550934|ref|YP_003471838.1| Polyribonucleotide nucleotidyltransferase [Staphylococcus
lugdunensis HKU09-01]
gi|289180466|gb|ADC87711.1| Polyribonucleotide nucleotidyltransferase [Staphylococcus
lugdunensis HKU09-01]
Length = 698
Score = 148 bits (374), Expect = 5e-34, Method: Composition-based stats.
Identities = 45/242 (18%), Positives = 88/242 (36%), Gaps = 18/242 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56
+R GR+ +++R + + A GS L G T L+ T + ++ + +
Sbjct: 318 IRPDGRKPDEIRLLESEVGILPRAHGSGLFTRGQTQALSVLTLGALGDYQIIDGLGPEQE 377
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y S G A R+ G RALR ++ ++ I I
Sbjct: 378 KRFMHHYNFPNFSVGETGPVRAPGRREIGHGALG----ERALRHIIPDTSKFPYTIRIVS 433
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V++++G + A+I G+ +AL D ++ + V + + D
Sbjct: 434 EVLESNGSSSQASICGSTLALMDAGVPIKAPVAGIAMGLVTRED---------SYTILTD 484
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED+ D+D T G I +Q + +++ L A+ ++
Sbjct: 485 IQGMEDALGDMDFKVAGTKDG-ITAIQMDIKIDGLTREVIEEALEQARKGRLAIMDHMLQ 543
Query: 237 VI 238
I
Sbjct: 544 TI 545
Score = 109 bits (271), Expect = 4e-22, Method: Composition-based stats.
Identities = 40/231 (17%), Positives = 83/231 (35%), Gaps = 26/231 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKV---PMWIRNTKHGWITAEYGMLP 67
R +++ ++K A G+ LV++GDT +L+TA ++ + + G +P
Sbjct: 15 RSLTIETGQLAKQANGAVLVRYGDTVVLSTAVASKEPRDGDFFPLTVNYEEKMYAAGKIP 74
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R GR G + R+I R +R + QI+ D
Sbjct: 75 GGFKKR------EGRPGDEATLTARLIDRPIRPLFPKGYKHDVQIMNIVLSADPDCSPEM 128
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
AA+ G+ +A +G +A ++ G + G +++ + +
Sbjct: 129 AAMIGSSMA-------------LSVSDIPFQGPIAGVNVGYVDGKYVINPTLEQKEQSRL 175
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
D + V+ A ++ + D I L++ Q+ ++
Sbjct: 176 DLEVAGHKD-AVNMVEAGASE--ITEQEMLEAIFFGHDEIKRLVEFQQQIV 223
>gi|15618907|ref|NP_225193.1| polynucleotide phosphorylase/polyadenylase [Chlamydophila
pneumoniae CWL029]
gi|15836530|ref|NP_301054.1| polynucleotide phosphorylase/polyadenylase [Chlamydophila
pneumoniae J138]
gi|16752027|ref|NP_445393.1| polynucleotide phosphorylase/polyadenylase [Chlamydophila
pneumoniae AR39]
gi|81789835|sp|Q9Z6R0|PNP_CHLPN RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|4377328|gb|AAD19136.1| Polyribonucleotide Nucleotidyltransferase [Chlamydophila pneumoniae
CWL029]
gi|7189766|gb|AAF38644.1| polyribonucleotide nucleotidyltransferase [Chlamydophila pneumoniae
AR39]
gi|8979372|dbj|BAA99206.1| polyribonucleotide nucleotidyltransferase [Chlamydophila pneumoniae
J138]
Length = 694
Score = 148 bits (374), Expect = 5e-34, Method: Composition-based stats.
Identities = 46/243 (18%), Positives = 85/243 (34%), Gaps = 18/243 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKH 56
+R GR +R I++ GSCL G+T L TL + +
Sbjct: 314 IRADGRSLTTVRPITIETSYLPRTHGSCLFTRGETQTLAVCTLGSEAMAQRYEDLNGEGL 373
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
+Y P S G + + R+ G + +AL + SA I I+
Sbjct: 374 SKFYLQYFFPPFSVGEVGRIGSPGRREIGHGKL----AEKALSHALPDSATFPYTIRIES 429
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
++ +++G + A++ G +AL D + + +L + D
Sbjct: 430 NITESNGSSSMASVCGGCLALMDAGVPISSPIAGIAMGLILD---------DQGAIILSD 480
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D + G I Q + + L+ AK D++ + +
Sbjct: 481 ISGLEDHLGDMDFKIAGSGKG-ITAFQMDIKVEGITPAIMKKALSQAKQGCNDILNIMNE 539
Query: 237 VIS 239
+S
Sbjct: 540 ALS 542
Score = 89.9 bits (221), Expect = 2e-16, Method: Composition-based stats.
Identities = 35/236 (14%), Positives = 78/236 (33%), Gaps = 30/236 (12%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTAT---LEEKVPMWIRNTKHGWITAEYGMLPRS 69
+ +++ A G+ LV+ G+T + +A L++KV + + G
Sbjct: 16 LVFETGKIARQANGAVLVRSGETCVFASACAVDLDDKVDFLPLRVDYQEKFSSTGKTLGG 75
Query: 70 TGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAA 129
R GR + + R+I R+LR + Q++ A
Sbjct: 76 FIKR------EGRPSEKEILVSRLIDRSLRPSFPYRLMQDVQVLSYVWSYDGQVLPDPLA 129
Query: 130 ITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDA 189
I A + VA + G + +++ E ++ +D
Sbjct: 130 ICAA-------------SAALAISDIPQSNIVAGVRIGCIDNQWVINPTKTELASSTLDL 176
Query: 190 NFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK----LQKDVISNE 241
T++ I+ ++ F+++ + I + K Q++V ++
Sbjct: 177 VLAGTEN-AILMIE--GHCDFFTEEQVLDAIEFGHKHIVTICKRLQLWQEEVGKSK 229
>gi|212692847|ref|ZP_03300975.1| hypothetical protein BACDOR_02346 [Bacteroides dorei DSM 17855]
gi|212664636|gb|EEB25208.1| hypothetical protein BACDOR_02346 [Bacteroides dorei DSM 17855]
Length = 728
Score = 148 bits (374), Expect = 5e-34, Method: Composition-based stats.
Identities = 49/243 (20%), Positives = 87/243 (35%), Gaps = 18/243 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHG 57
RL GR+ ++R I GS + G+T LT+ T L+EK+ + +
Sbjct: 336 RLDGRKTTEIRPIWCEVGYLPGPHGSAIFTRGETQSLTSVTLGTKLDEKIVDDVLDQHRE 395
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P STG + V R+ G RAL+ + + + D
Sbjct: 396 RFLLHYNFPPYSTGEAKAQRGVGRREIGHGHL----AWRALKGQIPTGY--PYTVRVVSD 449
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+++++G + A + +AL D M+ + + + G + D+
Sbjct: 450 IMESNGSSSMATVCAGTLALMDAGVAMKKPVSGIAMGLIKN-------AGEEKYAVLSDI 502
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T G I Q + S + L AK+ ++ +
Sbjct: 503 LGDEDHLGDMDFKVTGTRDG-ITATQMDIKVDGLSFEILEKALLQAKEGREHILNKLTEC 561
Query: 238 ISN 240
I+
Sbjct: 562 IAE 564
Score = 103 bits (256), Expect = 3e-20, Method: Composition-based stats.
Identities = 38/241 (15%), Positives = 73/241 (30%), Gaps = 26/241 (10%)
Query: 3 LSGRQENQMREISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
GR I+L ++K A+GS +++ G+T LL T +
Sbjct: 29 PDGRT------ITLETGKLAKQADGSVMLRMGNTMLLATVCAAKDAVPGTDFMPLQVEYK 82
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
E G+ R++ RALR + + + I
Sbjct: 83 EKYSAFGRFP--GGFTKREGKASDYEILTCRLVDRALRPLFPDNFHAEVYVNIVLFSADG 140
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
L + + G ++ + + G +++ + +
Sbjct: 141 IDMPDA-------------LAGLAASAALAVSDIPFGGPISEVRVARIDGQFVINPTFEQ 187
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
D+D T +I+ V+ E S+ A + A + I K Q + + E
Sbjct: 188 LGKADMDLMVAATYD-NIMMVE--GEMQEVSEQDLLAAMKAAHEAIKVHCKAQME-LMEE 243
Query: 242 V 242
V
Sbjct: 244 V 244
>gi|33242368|ref|NP_877309.1| polynucleotide phosphorylase/polyadenylase [Chlamydophila
pneumoniae TW-183]
gi|33236879|gb|AAP98966.1| polyribonucleotide nucleotidyltransferase [Chlamydophila pneumoniae
TW-183]
Length = 694
Score = 148 bits (374), Expect = 5e-34, Method: Composition-based stats.
Identities = 46/243 (18%), Positives = 85/243 (34%), Gaps = 18/243 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKH 56
+R GR +R I++ GSCL G+T L TL + +
Sbjct: 314 IRADGRSLTTVRPITIETSYLPRTHGSCLFTRGETQTLAVCTLGSEAMAQRYEDLNGEGL 373
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
+Y P S G + + R+ G + +AL + SA I I+
Sbjct: 374 SKFYLQYFFPPFSVGEVGRIGSPGRREIGHGKL----AEKALSHALPDSATFPYTIRIES 429
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
++ +++G + A++ G +AL D + + +L + D
Sbjct: 430 NITESNGSSSMASVCGGCLALMDAGVPISSPIAGIAMGLILD---------DQGAIILSD 480
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D + G I Q + + L+ AK D++ + +
Sbjct: 481 ISGLEDHLGDMDFKIAGSGKG-ITAFQMDIKVEGITPAIMKKALSQAKQGCNDILNIMNE 539
Query: 237 VIS 239
+S
Sbjct: 540 ALS 542
Score = 89.9 bits (221), Expect = 3e-16, Method: Composition-based stats.
Identities = 33/223 (14%), Positives = 72/223 (32%), Gaps = 26/223 (11%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTAT---LEEKVPMWIRNTKHGWITAEYGMLPRS 69
+ +++ A G+ LV+ G+T + +A L++KV + + G
Sbjct: 16 LVFETGKIARQANGAVLVRSGETCVFASACAVDLDDKVDFLPLRVDYQEKFSSTGKTLGG 75
Query: 70 TGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAA 129
R GR + + R+I R+LR + Q++ A
Sbjct: 76 FIKR------EGRPSEKEILVSRLIDRSLRPSFPYRLMQDVQVLSYVWSYDGQVLPDPLA 129
Query: 130 ITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDA 189
I A + VA + G + +++ E ++ +D
Sbjct: 130 ICAA-------------SAALAISDIPQSNIVAGVRIGCIDNQWVINPTKTELASSTLDL 176
Query: 190 NFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
T++ I+ ++ F+++ + I + K
Sbjct: 177 VLAGTEN-AILMIE--GHCDFFTEEQVLDAIEFGHKHIVTICK 216
>gi|39933509|ref|NP_945785.1| polynucleotide phosphorylase/polyadenylase [Rhodopseudomonas
palustris CGA009]
gi|81564252|sp|Q6NCN8|PNP_RHOPA RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|39647355|emb|CAE25876.1| polyribonucleotide nucleotidyltransferase [Rhodopseudomonas
palustris CGA009]
Length = 722
Score = 148 bits (374), Expect = 5e-34, Method: Composition-based stats.
Identities = 48/241 (19%), Positives = 89/241 (36%), Gaps = 18/241 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +R I V GS L G+T + TL +E+ + T
Sbjct: 316 RIDGRDSKTVRNILAQVGVLPRTHGSALFTRGETQAMVVTTLGTGEDEQYVDSLSGTYKE 375
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + R+ G + RA+ V+ I + +
Sbjct: 376 TFLLHYNFPPYSVGETGRLGGTKRREIGHGKL----AWRAIHPVLPPHHEFPYTIRVVSE 431
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ GA +AL D ++ + + +L+G A+ +
Sbjct: 432 ITESNGSSSMASVCGASLALMDAGVPLKRPTAGIAMGLILEGERFAVLSD---------I 482
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T++G I +Q + A +++ L AKD ++
Sbjct: 483 LGDEDHLGDMDFKVAGTEAG-ITSLQMDIKIAGITEEIMKVALGQAKDGRIHILGEMSKA 541
Query: 238 I 238
+
Sbjct: 542 L 542
Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats.
Identities = 36/235 (15%), Positives = 75/235 (31%), Gaps = 28/235 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKHGWITAEYGML 66
R + L V++ A+G+ + +G+T +L T E V + G +
Sbjct: 14 RPLKLETGKVARQADGAVVATYGETVVLATVVAAKAPREGVDFLPLTVDYQEKAYAAGRI 73
Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
P R GR + + R+I R +R + Q+I+ +
Sbjct: 74 PGGYFKR------EGRPTEKETLVSRLIDRPIRPLFADGWRNETQVIVTVLSHDMENDPD 127
Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
A+ A A KG + A G + +++ E +
Sbjct: 128 VLAMVAASAA-------------LTLSGVPFKGPIGAARVGFINDEYVLNPVLDEMAETQ 174
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
++ T ++ V+ A+ S++ + +I D ++ +
Sbjct: 175 LELVVAGTAD-AVLMVESEAKE--LSEEIMLGAVMFGHRHFQPVIDAIID-LAEK 225
>gi|322831218|ref|YP_004211245.1| polyribonucleotide nucleotidyltransferase [Rahnella sp. Y9602]
gi|321166419|gb|ADW72118.1| polyribonucleotide nucleotidyltransferase [Rahnella sp. Y9602]
Length = 707
Score = 148 bits (374), Expect = 5e-34, Method: Composition-based stats.
Identities = 45/242 (18%), Positives = 91/242 (37%), Gaps = 18/242 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR+++ +R + + V GS L G+T L TATL + + + K
Sbjct: 315 RIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQNLDELMGEKTD 374
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + R+ G + R + +++ + + +
Sbjct: 375 SFLFHYNFPPYSVGETGMVGSPKRREIGHGRL----AKRGVLAMMPKPEDFPYTVRVVSE 430
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ GA +AL D ++ + V +G + +
Sbjct: 431 ITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGESFIVLSD---------I 481
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D + G I +Q + +++ LN AK ++ + +
Sbjct: 482 LGDEDHLGDMDFKVAGSRDG-ITALQMDIKIEGITREIMQVALNQAKGARLHILGVMEQA 540
Query: 238 IS 239
IS
Sbjct: 541 IS 542
Score = 93.4 bits (230), Expect = 3e-17, Method: Composition-based stats.
Identities = 40/232 (17%), Positives = 76/232 (32%), Gaps = 27/232 (11%)
Query: 14 ISLTRRV-SKYAEGSCLVKFGDTHLLTTATLEEKVPM----WIRNTKHGWITAEYGMLPR 68
++L + ++ A + +V DT + T ++K + + T G +P
Sbjct: 16 VTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQSFFPLTVNYQERTYAAGRIPG 75
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
S R GR R+I R +R + S L Q+I +
Sbjct: 76 SFFRR------EGRPSEGETLTSRLIDRPIRPLFPDSFLNEVQVIATVVSLNPQVNPDIV 129
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+ GA A G + A G + +++ E T +D
Sbjct: 130 AMIGASAA-------------LSLSGIPFNGPIGAARVGYINDQYVLNPTADELKTSRLD 176
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
T G ++ V+ AE S+D + ++ +I +++
Sbjct: 177 LVVAGTQ-GAVLMVESEAE--VLSEDQMLGAVVFGHEQQQIVIDNINSLVAE 225
>gi|187471096|sp|Q65ZW8|PNP_BORGA RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
Length = 721
Score = 148 bits (374), Expect = 5e-34, Method: Composition-based stats.
Identities = 46/244 (18%), Positives = 86/244 (35%), Gaps = 19/244 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
+R GR N++R+I + GS L G+T L TL +E++ I K
Sbjct: 315 IRTDGRTPNEIRDIIAEVDILSRTHGSALFTRGETQALAVTTLGTSIDEQIMDDIDGDKR 374
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P S G + R+ G RAL S+V I +
Sbjct: 375 LNFMLHYNFPPFSVGETGRLMTGR-REIGHGHL----AQRALESMVPGKNDFPYTIRVVS 429
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
++++++G + A + ++L ++ + + +G +
Sbjct: 430 EILESNGSSSMATVCAGSMSLMSAGVPVKRQVAGIAMGLISEGDKYVVLSD--------- 480
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T +G I Q + ++ L A+ ++ +
Sbjct: 481 ILGEEDHLGDMDFKVAGTKNG-ITGFQMDIKIENVTKHLMRDALEQARIGRMHILSVMDT 539
Query: 237 VISN 240
VIS+
Sbjct: 540 VISD 543
Score = 109 bits (272), Expect = 3e-22, Method: Composition-based stats.
Identities = 46/239 (19%), Positives = 80/239 (33%), Gaps = 32/239 (13%)
Query: 5 GRQENQMREISLTRRV-SKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----HGWI 59
GR E+ +K A GS L +G + +L T V + +
Sbjct: 10 GRD-----ELVFETGFMAKQANGSVLATYGGSSVLATVCCSNNVREDLDFVPLSVEYNEK 64
Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119
G +P R G+ + + R+I R +R + D Q+I
Sbjct: 65 YYAAGKIPGGFIKR------EGKPKDKEILVSRLIDRPMRPLFDKRFGREIQVIPTTLAT 118
Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179
+ A+ A+ G +AA+ L G IV+ +
Sbjct: 119 DQLNPPDIVGMNAAFTAVF-------------LSDIPFNGPIAAVRMVYLNGKFIVNPSF 165
Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
E D+D + +G I V+G A S+D + ++ A + I + QK+ +
Sbjct: 166 EEIHDSDLDIVVAGSLNG-ITMVEGGANE--VSEDILLSAIDGAHEYIKQICNAQKEFL 221
>gi|260771810|ref|ZP_05880728.1| polyribonucleotide nucleotidyltransferase [Vibrio metschnikovii CIP
69.14]
gi|260613102|gb|EEX38303.1| polyribonucleotide nucleotidyltransferase [Vibrio metschnikovii CIP
69.14]
Length = 711
Score = 148 bits (374), Expect = 5e-34, Method: Composition-based stats.
Identities = 41/242 (16%), Positives = 92/242 (38%), Gaps = 18/242 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR+++ +R + + V GS L G+T L TATL + ++ + +
Sbjct: 316 RIDGREKDMIRALDVRTGVLPRTHGSSLFTRGETQALVTATLGTQRDAQIIDELTGERKD 375
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
+ Y P G + R+ G + R + +V+ + + + +
Sbjct: 376 YFMLHYNFPPYCVGETGFVGSPKRREIGHGRL----AKRGIAAVMPSADEFPYTVRVVSE 431
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ G+ +AL D ++ + V + + +
Sbjct: 432 ITESNGSSSMASVCGSSLALMDAGVPIKASVAGIAMGLVKEDENFVVLSD---------I 482
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T +G + +Q + +++ LN AK ++ +
Sbjct: 483 LGDEDHLGDMDFKVAGTSNG-VTALQMDIKIEGITKEIMQIALNQAKGARLHILSVMDQA 541
Query: 238 IS 239
I+
Sbjct: 542 IA 543
Score = 89.1 bits (219), Expect = 5e-16, Method: Composition-based stats.
Identities = 35/228 (15%), Positives = 72/228 (31%), Gaps = 27/228 (11%)
Query: 14 ISLTRRV-SKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKHGWITAEYGMLPR 68
++L V ++ A + + DT + + + E + + T G +P
Sbjct: 17 VTLETGVMARQATAAVMATMDDTAVFVSVVGKKDAVEGQDFFPLTVNYQERTYAAGKIPG 76
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
R GR I R+I R +R + + Q+I + +
Sbjct: 77 GFFKR------EGRPSESETLIARLIDRPIRPLFHDAFTNEVQVIATVVSVNPNVQPDIV 130
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
+ G A G + A G + G +++ E +D
Sbjct: 131 TMIGTSAA-------------LAISGMPFNGPIGAARVGHINGQLVLNPSPKELDQSRLD 177
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
T+ G ++ V+ A+ S++ A + D+ +I +
Sbjct: 178 LVVAGTE-GAVLMVESEADI--LSEEEMLAAVVYGHDQQQVVINAINE 222
>gi|152991076|ref|YP_001356798.1| polynucleotide phosphorylase/polyadenylase [Nitratiruptor sp.
SB155-2]
gi|187610315|sp|A6Q4N2|PNP_NITSB RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|151422937|dbj|BAF70441.1| polyribonucleotide nucleotidyltransferase [Nitratiruptor sp.
SB155-2]
Length = 732
Score = 148 bits (374), Expect = 5e-34, Method: Composition-based stats.
Identities = 48/247 (19%), Positives = 92/247 (37%), Gaps = 23/247 (9%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWI------RNTK 55
R GR +R I + + A GSCL G+T L T+ EK + + +
Sbjct: 345 RADGRGLKDVRPIDIKTNILPSAHGSCLFTRGETQALVVCTIGEKTDAQMYEMLTSKGPE 404
Query: 56 HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115
+ Y P S G A R+ G RAL VVD+ + +
Sbjct: 405 YEHFMVHYNFPPFSVGEAKPISAPGRRELGHGNL----ARRALEPVVDVPE--DKTYRLV 458
Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIV 175
++++++G + A + G +AL + D + +++ AI ++
Sbjct: 459 SEILESNGSSSMATVCGGALALKAANIDLADLVAGVAMGLIVEDDKYAILTDIM------ 512
Query: 176 DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
ED D+D T G + +Q + Q+ L A++ ++K+ +
Sbjct: 513 ---GLEDHDGDMDFKVAGTHDG-VTAMQMDIKLGGVQQEILEQALQQAREARLHILKIME 568
Query: 236 DVISNEV 242
+ + ++
Sbjct: 569 EA-AEKI 574
Score = 58.3 bits (139), Expect = 9e-07, Method: Composition-based stats.
Identities = 31/201 (15%), Positives = 68/201 (33%), Gaps = 24/201 (11%)
Query: 17 TRR-VSKYAEGSCLVKFGDTHLLTTATLEEKV---PMWIRNTKHGWITAEYGMLPRSTGN 72
V+K GS L+K G T +L T +E+++ ++ + G +P
Sbjct: 17 EFGEVAKQTNGSVLLKSGKTVMLATVVMEKEMVDEDFLPLTVQYIEKSYAAGKIPGGFVK 76
Query: 73 RVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITG 132
R + G R++ RALR + L I + + + A+
Sbjct: 77 R------EQKPGDFETLTARIVDRALRPLFPKGYLYPTVITVMVLSADPESDLQVLALNA 130
Query: 133 AWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFV 192
A AL + + ++++V G + + + +D
Sbjct: 131 ASAALFVSDIPVRKAVSGLRVAKV-------------DGEVLFNPPLSKLKESTLDLYLA 177
Query: 193 MTDSGHIVEVQGSAERATFSQ 213
T ++ ++ +A + ++
Sbjct: 178 GTKE-ELLMIEMAAIGSYKTE 197
>gi|89101186|ref|ZP_01174017.1| PnpA [Bacillus sp. NRRL B-14911]
gi|89084095|gb|EAR63265.1| PnpA [Bacillus sp. NRRL B-14911]
Length = 706
Score = 148 bits (374), Expect = 5e-34, Method: Composition-based stats.
Identities = 42/244 (17%), Positives = 81/244 (33%), Gaps = 18/244 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56
+R GR + +R +S + GS L G T L+ T + ++ + +
Sbjct: 315 VRPDGRGLDVIRPLSSEIGLLPRTHGSGLFTRGQTQALSICTLGALGDVQILDGLGIEEE 374
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y S G R+ G RAL V+ + +
Sbjct: 375 KRFMHHYNFPNFSVGETGPMRGPGRREIGHGALG----ERALEPVIPNEKDFPYTVRLVS 430
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V++++G T A+I + +A+ D ++ + + G + D
Sbjct: 431 EVLESNGSTSQASICASTLAMMDAGVPIKAPVAGIAMGLIKSGD---------YYSILTD 481
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T G + +Q + S++ L AK ++
Sbjct: 482 IQGMEDHLGDMDFKVAGTSKG-VTALQMDIKIEGLSREILEEALQQAKAGRMQILDSMLA 540
Query: 237 VISN 240
I+
Sbjct: 541 TIAE 544
Score = 111 bits (276), Expect = 1e-22, Method: Composition-based stats.
Identities = 41/233 (17%), Positives = 88/233 (37%), Gaps = 26/233 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATL---EEKVPMWIRNTKHGWITAEYGMLP 67
R +++ ++K A G+ L+++GDT +L+TAT + + + + G +P
Sbjct: 15 RTLTVEIGQLAKQANGAALIRYGDTAVLSTATASKEPKNLDFFPLTVNYEERLYAVGKIP 74
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R GR ++ R+I R +R + Q++ + D +
Sbjct: 75 GGFIKR------EGRPSEKAILASRLIDRPIRPLFADGFRNEVQVVSMVMSVDQDCSSEM 128
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
AA+ G+ +A G +A ++ G + G +++ + + D+
Sbjct: 129 AAMFGSSLA-------------LSVSDIPFGGPIAGVTVGRINGEFVINPTVEQQNESDM 175
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
T I V+ A+ ++ + + I LI Q+ ++S
Sbjct: 176 HLVVAGTKD-AINMVEAGADEVP--EETMLEAIMYGHEEIKRLISFQEQIVSE 225
>gi|15241441|ref|NP_196962.1| polyribonucleotide nucleotidyltransferase, putative [Arabidopsis
thaliana]
gi|4971998|emb|CAB43864.1| polynucleotide phosphorylase [Arabidopsis thaliana]
gi|4972000|emb|CAB43865.1| polynucleotide phosphorylase [Arabidopsis thaliana]
gi|7573307|emb|CAB87625.1| polynucleotide phosphorylase [Arabidopsis thaliana]
gi|332004667|gb|AED92050.1| polyribonucleotide nucleotidyltransferase [Arabidopsis thaliana]
Length = 991
Score = 148 bits (374), Expect = 5e-34, Method: Composition-based stats.
Identities = 51/244 (20%), Positives = 89/244 (36%), Gaps = 11/244 (4%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
R+ GR +++R I GS L GDT +L T TL E + +
Sbjct: 363 FRVDGRHVDEVRPIYCESHYLPALHGSALFSRGDTQVLCTVTLGAPAEAQSLDSLVGPPK 422
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P T KR ++ R+ G +AL +V+ I I+
Sbjct: 423 KRFMLHYSFPPYCTNEVGKRGGLNRREVGHGTL----AEKALLAVLPPEEAFPYTIRINS 478
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V+ +DG T A++ G +AL D + + + + S + + D
Sbjct: 479 EVMSSDGSTSMASVCGGSMALMDAGIPLRAHVAGVSVGLITDVDPS--SGEIKDYRIVTD 536
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T G + +Q + A D L A++ ++ +
Sbjct: 537 ILGLEDHLGDMDFKIAGTRDG-VTAIQLDIKPAGIPLDIVCESLENAREARLQILDHMER 595
Query: 237 VISN 240
I++
Sbjct: 596 NINS 599
Score = 82.2 bits (201), Expect = 5e-14, Method: Composition-based stats.
Identities = 39/235 (16%), Positives = 77/235 (32%), Gaps = 29/235 (12%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATL---EEKVPMWIRNTKHGWITAEYGMLP 67
R +S ++++A GS ++ +T +L+T T + + G++P
Sbjct: 62 RVVSFETGKIARFANGSVVLGMDETKVLSTVTCAKTDSPRDFLPLTVDYQEKQYAQGLIP 121
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
+ R G R R+I R +R + QI+
Sbjct: 122 NTYMRR------EGAPKERELLCGRLIDRPIRPLFPTGFYHEVQIMASVLSSDGKQDPDI 175
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
A + AL G + I G +CG +V+ E S+ D+
Sbjct: 176 LAANASSAALM-------------LSDVPWGGPIGVIRIGRICGQFVVNPTMDELSSSDL 222
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAK-DRIADLIKLQKDVISNE 241
+ + T + + + S+ A L LA + + L + ++ +
Sbjct: 223 NLIYACTRDKT-MMIDVQSRE--ISEKDLAAALRLAHPEAVKYLDPQIR--LAEK 272
>gi|124266592|ref|YP_001020596.1| polynucleotide phosphorylase/polyadenylase [Methylibium
petroleiphilum PM1]
gi|187610284|sp|A2SFM2|PNP_METPP RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|124259367|gb|ABM94361.1| putative polyribonucleotide nucleotidyltransferase protein
[Methylibium petroleiphilum PM1]
Length = 751
Score = 148 bits (374), Expect = 5e-34, Method: Composition-based stats.
Identities = 42/242 (17%), Positives = 88/242 (36%), Gaps = 18/242 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +R I + V GS L G+T L TL + + +
Sbjct: 317 RIDGRDTRTVRPIEIRSSVLPRTHGSALFTRGETQALVITTLGTERDTQRIDALAGEFED 376
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y M P +TG + + R+ G + RAL V+ + I + +
Sbjct: 377 RFMFHYNMPPFATGETGRVGSPKRREIGHGRL----AKRALIPVLPKKDEFAYAIRVVSE 432
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ G +++ D ++ + + G+ A+ +
Sbjct: 433 ITESNGSSSMASVCGGCLSMMDAGVPLKAHVAGIAMGLIKDGNRFAVLTD---------I 483
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T +G + +Q + +++ L AK+ ++ +
Sbjct: 484 LGDEDHLGDMDFKVAGTTTG-VTALQMDIKIQGITKEIMQVALAQAKEARLHILGKMVEA 542
Query: 238 IS 239
+
Sbjct: 543 LG 544
Score = 88.0 bits (216), Expect = 1e-15, Method: Composition-based stats.
Identities = 33/233 (14%), Positives = 76/233 (32%), Gaps = 31/233 (13%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT----KHGWITAEYGMLPR 68
++L +++ + G+ +V T +L T + + T G +P
Sbjct: 18 VTLETGEIARQSGGAVIVDMDGTVVLATVVAAKNPKPGQDFFPLTVDYIEKTYAAGKIPG 77
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
S R GR R+I R LR + Q+++ + + A
Sbjct: 78 SFFKR------EGRPSELETLTSRLIDRPLRPLFPEGFYNEVQVVVHVLSLNPEASADIA 131
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+ G+ A G + A G + G +++ + + +D
Sbjct: 132 ALIGSSAA-------------LAISGIPFNGPIGAARVGYINGEYVLNPGPTQLADSKLD 178
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKD----RIADLIKLQKDV 237
T++ ++ V+ +E +D + + + + +L ++
Sbjct: 179 LIVAGTEA-AVLMVE--SEADQLPEDIMLGGVVFGHEQGNIAVRVINELVREA 228
>gi|212709941|ref|ZP_03318069.1| hypothetical protein PROVALCAL_00991 [Providencia alcalifaciens DSM
30120]
gi|212687453|gb|EEB46981.1| hypothetical protein PROVALCAL_00991 [Providencia alcalifaciens DSM
30120]
Length = 685
Score = 148 bits (374), Expect = 5e-34, Method: Composition-based stats.
Identities = 46/243 (18%), Positives = 92/243 (37%), Gaps = 18/243 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR+++ +R + + V GS L G+T L TATL + +V +
Sbjct: 294 RIDGREKDMVRALDVRTGVLPRTHGSALFTRGETQALVTATLGTERDAQVIDQLMGEYTD 353
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + R+ G + R + +V+ A + + +
Sbjct: 354 RFLFHYNFPPYSVGETGMVGSPKRREIGHGRL----AKRGVLAVMPSQAEFPYTVRVVSE 409
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ GA +AL D ++ + V +G + +
Sbjct: 410 ITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDDFVVLSD---------I 460
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D + G I +Q + +++ LN AK ++ +
Sbjct: 461 LGDEDHLGDMDFKVAGSRDG-ISALQMDIKIEGITREIMQVALNQAKGARLHILSTMEQA 519
Query: 238 ISN 240
I++
Sbjct: 520 INS 522
Score = 71.8 bits (174), Expect = 8e-11, Method: Composition-based stats.
Identities = 40/225 (17%), Positives = 75/225 (33%), Gaps = 26/225 (11%)
Query: 20 VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----HGWITAEYGMLPRSTGNRVK 75
+++ A + +V DT + TA ++KV + T G +P S R
Sbjct: 2 IARQATAAVMVNMDDTAVFVTAVAQKKVKEGQDFFPLTVNYQERTYAAGRIPGSFFRR-- 59
Query: 76 REAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWV 135
GR G + R+I R LR + L QII + A+ GA
Sbjct: 60 ----EGRPGEGETLVARLIDRPLRPLFPEGFLNEIQIIATVVSVNPQVNPDIVAMIGASA 115
Query: 136 ALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTD 195
A G + A G + +++ E + +D T
Sbjct: 116 A-------------LALSGVPFNGPIGAARVGFINDQYVLNPTADELKSSRLDLVVAGT- 161
Query: 196 SGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
++ V+ AE + ++ + D+ +I+ +++
Sbjct: 162 DSAVLMVESEAELLS--EEQMLGAVVFGHDQQQVVIQNINELVKE 204
>gi|219684925|ref|ZP_03539866.1| polyribonucleotide nucleotidyltransferase
(Polynucleotidephosphorylase) [Borrelia garinii PBr]
gi|219671663|gb|EED28719.1| polyribonucleotide nucleotidyltransferase
(Polynucleotidephosphorylase) [Borrelia garinii PBr]
Length = 721
Score = 148 bits (374), Expect = 5e-34, Method: Composition-based stats.
Identities = 46/244 (18%), Positives = 86/244 (35%), Gaps = 19/244 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
+R GR N++R+I + GS L G+T L TL +E++ I K
Sbjct: 315 IRTDGRTPNEIRDIIAEVDILSRTHGSALFTRGETQALAVTTLGTSIDEQIMDDIDGDKR 374
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P S G + R+ G RAL S+V I +
Sbjct: 375 LNFMLHYNFPPFSVGETGRLMTGR-REIGHGHL----AQRALESMVPGKNDFPYTIRVVS 429
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
++++++G + A + ++L ++ + + +G +
Sbjct: 430 EILESNGSSSMATVCAGSMSLMSAGVPVKRQVAGIAMGLISEGDKYVVLSD--------- 480
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T +G I Q + ++ L A+ ++ +
Sbjct: 481 ILGEEDHLGDMDFKVAGTKNG-ITGFQMDIKIENVTKHLMRDALEQARIGRMHILSVMDT 539
Query: 237 VISN 240
VIS+
Sbjct: 540 VISD 543
Score = 109 bits (271), Expect = 5e-22, Method: Composition-based stats.
Identities = 46/240 (19%), Positives = 79/240 (32%), Gaps = 32/240 (13%)
Query: 5 GRQENQMREISLTRRV-SKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----HGWI 59
GR E+ +K A GS L +G + +L T V + +
Sbjct: 10 GRD-----ELVFETGFMAKQANGSVLATYGGSSVLATVCCSNNVREDLDFVPLSVEYNEK 64
Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119
G +P R G+ + + R+I R +R + D Q+I
Sbjct: 65 YYAAGKIPGGFIKR------EGKPKDKEILVSRLIDRPMRPLFDKRFGREIQVIPTTLAT 118
Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179
+ A+ A+ G +AA+ L G IV+ +
Sbjct: 119 DQLNPPDIVGMNAAFTAVF-------------LSDIPFNGPIAAVRMVYLNGEFIVNPSF 165
Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
E D+D + +G I V+G A S+D + ++ A + I + QK +
Sbjct: 166 EEIHDSDLDIVVAGSLNG-ITMVEGGANE--VSEDILLSAIDGAHEYIKQICNAQKKFLE 222
>gi|51599057|ref|YP_073245.1| polynucleotide phosphorylase/polyadenylase [Borrelia garinii PBi]
gi|51573628|gb|AAU07653.1| polyribonucleotide nucleotidyltransferase [Borrelia garinii PBi]
Length = 715
Score = 148 bits (374), Expect = 5e-34, Method: Composition-based stats.
Identities = 46/244 (18%), Positives = 86/244 (35%), Gaps = 19/244 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
+R GR N++R+I + GS L G+T L TL +E++ I K
Sbjct: 309 IRTDGRTPNEIRDIIAEVDILSRTHGSALFTRGETQALAVTTLGTSIDEQIMDDIDGDKR 368
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P S G + R+ G RAL S+V I +
Sbjct: 369 LNFMLHYNFPPFSVGETGRLMTGR-REIGHGHL----AQRALESMVPGKNDFPYTIRVVS 423
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
++++++G + A + ++L ++ + + +G +
Sbjct: 424 EILESNGSSSMATVCAGSMSLMSAGVPVKRQVAGIAMGLISEGDKYVVLSD--------- 474
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T +G I Q + ++ L A+ ++ +
Sbjct: 475 ILGEEDHLGDMDFKVAGTKNG-ITGFQMDIKIENVTKHLMRDALEQARIGRMHILSVMDT 533
Query: 237 VISN 240
VIS+
Sbjct: 534 VISD 537
Score = 109 bits (272), Expect = 4e-22, Method: Composition-based stats.
Identities = 46/239 (19%), Positives = 80/239 (33%), Gaps = 32/239 (13%)
Query: 5 GRQENQMREISLTRRV-SKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----HGWI 59
GR E+ +K A GS L +G + +L T V + +
Sbjct: 4 GRD-----ELVFETGFMAKQANGSVLATYGGSSVLATVCCSNNVREDLDFVPLSVEYNEK 58
Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119
G +P R G+ + + R+I R +R + D Q+I
Sbjct: 59 YYAAGKIPGGFIKR------EGKPKDKEILVSRLIDRPMRPLFDKRFGREIQVIPTTLAT 112
Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179
+ A+ A+ G +AA+ L G IV+ +
Sbjct: 113 DQLNPPDIVGMNAAFTAVF-------------LSDIPFNGPIAAVRMVYLNGKFIVNPSF 159
Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
E D+D + +G I V+G A S+D + ++ A + I + QK+ +
Sbjct: 160 EEIHDSDLDIVVAGSLNG-ITMVEGGANE--VSEDILLSAIDGAHEYIKQICNAQKEFL 215
>gi|85708632|ref|ZP_01039698.1| RNase PH [Erythrobacter sp. NAP1]
gi|85690166|gb|EAQ30169.1| RNase PH [Erythrobacter sp. NAP1]
Length = 227
Score = 148 bits (374), Expect = 5e-34, Method: Composition-based stats.
Identities = 119/229 (51%), Positives = 155/229 (67%), Gaps = 2/229 (0%)
Query: 11 MREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRST 70
MR I++ +K+AEGSCL+ FGDT +L TA++EE++P W+R GW+T EY MLPR+T
Sbjct: 1 MRTITIETGYTKHAEGSCLISFGDTKVLCTASVEERIPPWLRGKGEGWVTGEYSMLPRAT 60
Query: 71 GNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAI 130
R REA G+Q GR+QEIQR+IGR+LR+VVDL LG RQI +DCDVIQADGGTRTA+I
Sbjct: 61 HTRGSREAARGKQSGRTQEIQRLIGRSLRAVVDLQKLGERQITLDCDVIQADGGTRTASI 120
Query: 131 TGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDAN 190
+GAWVAL + + + G VAAISCG+ G P++DLDY EDS+ D DAN
Sbjct: 121 SGAWVALRLAVSKLMAE--GAIKEDPITGQVAAISCGIFEGTPVLDLDYDEDSSADADAN 178
Query: 191 FVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
FV+ D G I EVQ +AE AT+ ++ +L LA + K Q D +
Sbjct: 179 FVLIDGGQIAEVQATAEGATYDEEGLLRLLRLANIGCDAIFKAQLDAVK 227
>gi|120597905|ref|YP_962479.1| polynucleotide phosphorylase/polyadenylase [Shewanella sp. W3-18-1]
gi|146293923|ref|YP_001184347.1| polynucleotide phosphorylase/polyadenylase [Shewanella putrefaciens
CN-32]
gi|187611297|sp|A4Y9B5|PNP_SHEPC RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|187611299|sp|A1RGY0|PNP_SHESW RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|120557998|gb|ABM23925.1| Polyribonucleotide nucleotidyltransferase [Shewanella sp. W3-18-1]
gi|145565613|gb|ABP76548.1| Polyribonucleotide nucleotidyltransferase [Shewanella putrefaciens
CN-32]
gi|319427300|gb|ADV55374.1| polyribonucleotide nucleotidyltransferase [Shewanella putrefaciens
200]
Length = 699
Score = 148 bits (374), Expect = 5e-34, Method: Composition-based stats.
Identities = 41/240 (17%), Positives = 87/240 (36%), Gaps = 10/240 (4%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R+ GR+ + +R +S+ V GS L G+T L T TL + ++ G T
Sbjct: 314 RIDGREPDMIRALSVLAGVLPRTHGSALFTRGETQALVTCTLGTERDAQKIDSIMGERTN 373
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
+ + V + G R ++ R + +V+ + + + ++ ++
Sbjct: 374 RFMLHYNFPPYSVGETGMVGSPKRREIGHGKLAWRGINAVMPSAEEFPYSVRVVSEITES 433
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
+G + A++ G +AL D ++ + V +G + + E
Sbjct: 434 NGSSSMASVCGTSLALMDAGVPIKTSVAGIAMGLVKEGDDFVVLSD---------ILGDE 484
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
D D+D T G I +Q + +++ L A ++ + I +
Sbjct: 485 DHLGDMDFKVAGTR-GGITALQMDIKIEGITKEIMEIALQQAYGARVHILNVMDQAIGSH 543
Score = 91.4 bits (225), Expect = 1e-16, Method: Composition-based stats.
Identities = 37/228 (16%), Positives = 72/228 (31%), Gaps = 27/228 (11%)
Query: 14 ISLTRRV-SKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGMLPR 68
++L V ++ A+ + L GDT +L T E + + T G +P
Sbjct: 15 VTLETGVIARQADAAVLASMGDTTVLVTVVGKKEAEAGRDFFPLTVNYQEKTYAAGKIPG 74
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
R GR I R+I R +R + Q+II +
Sbjct: 75 GFFKR------EGRPSEDETLIARLIDRPIRPLFPNGFKNEVQVIITVVSVDPQIEPDII 128
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
++ G A G + A G + G +++ + T ++
Sbjct: 129 SMIGTSAA-------------LAISGIPFSGPLGAARVGYINGEYVLNPTVAQIETSQLN 175
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
T S ++ V+ A+ ++ + D+ +I +
Sbjct: 176 LVVAGTAS-AVLMVESEAQA--LPEEVMLGSVVYGHDQQQVVINAIAE 220
>gi|265754741|ref|ZP_06089793.1| polyribonucleotide nucleotidyltransferase [Bacteroides sp.
3_1_33FAA]
gi|263234855|gb|EEZ20423.1| polyribonucleotide nucleotidyltransferase [Bacteroides sp.
3_1_33FAA]
Length = 728
Score = 148 bits (373), Expect = 6e-34, Method: Composition-based stats.
Identities = 49/243 (20%), Positives = 87/243 (35%), Gaps = 18/243 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHG 57
RL GR+ ++R I GS + G+T LT+ T L+EK+ + +
Sbjct: 336 RLDGRKTTEIRPIWCEVGYLPGPHGSAIFTRGETQSLTSVTLGTKLDEKIVDDVLDQHRE 395
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P STG + V R+ G RAL+ + + + D
Sbjct: 396 RFLLHYNFPPYSTGEAKAQRGVGRREIGHGHL----AWRALKGQIPAGY--PYTVRVVSD 449
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+++++G + A + +AL D M+ + + + G + D+
Sbjct: 450 IMESNGSSSMATVCAGTLALMDAGVAMKKPVSGIAMGLIKN-------AGEEKYAVLSDI 502
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T G I Q + S + L AK+ ++ +
Sbjct: 503 LGDEDHLGDMDFKVTGTRDG-ITATQMDIKVDGLSFEILEKALLQAKEGREHILNKLTEC 561
Query: 238 ISN 240
I+
Sbjct: 562 IAE 564
Score = 103 bits (256), Expect = 3e-20, Method: Composition-based stats.
Identities = 38/241 (15%), Positives = 73/241 (30%), Gaps = 26/241 (10%)
Query: 3 LSGRQENQMREISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
GR I+L ++K A+GS +++ G+T LL T +
Sbjct: 29 PDGRT------ITLETGKLAKQADGSVMLRMGNTMLLATVCAAKDAVPGTDFMPLQVEYK 82
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
E G+ R++ RALR + + + I
Sbjct: 83 EKYSAFGRFP--GGFTKREGKASDYEILTCRLVDRALRPLFPDNFHAEVYVNIVLFSADG 140
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
L + + G ++ + + G +++ + +
Sbjct: 141 IDMPDA-------------LAGLAASAALAVSDIPFGGPISEVRVARIDGQFVINPTFEQ 187
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
D+D T +I+ V+ E S+ A + A + I K Q + + E
Sbjct: 188 LGKADMDLMVAATYD-NIMMVE--GEMQEVSEQDLLAAMKAAHEAIKVHCKAQME-LMEE 243
Query: 242 V 242
V
Sbjct: 244 V 244
>gi|259907046|ref|YP_002647402.1| polynucleotide phosphorylase/polyadenylase [Erwinia pyrifoliae
Ep1/96]
gi|224962668|emb|CAX54123.1| Polyribonucleotide nucleotidyltransferase [Erwinia pyrifoliae
Ep1/96]
Length = 732
Score = 148 bits (373), Expect = 6e-34, Method: Composition-based stats.
Identities = 44/242 (18%), Positives = 90/242 (37%), Gaps = 18/242 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR+++ +R + + V GS L G+T L TATL + + + +
Sbjct: 337 RIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQNLDELMGERTD 396
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + R+ G + R + +V+ + + +
Sbjct: 397 NFLFHYNFPPYSVGETGMVGSPKRREIGHGRL----AKRGVLAVMPKGDAFPYTVRVVSE 452
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ GA +AL D ++ + V + + +
Sbjct: 453 ITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKDDNNFVVLSD---------I 503
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D + G I +Q + +++ LN AK ++ + +
Sbjct: 504 LGDEDHLGDMDFKVAGSREG-ITALQMDIKIEGITREIMQVALNQAKGARLHILSVMEQA 562
Query: 238 IS 239
IS
Sbjct: 563 IS 564
Score = 81.4 bits (199), Expect = 9e-14, Method: Composition-based stats.
Identities = 37/232 (15%), Positives = 73/232 (31%), Gaps = 27/232 (11%)
Query: 14 ISLTRRV-SKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----HGWITAEYGMLPR 68
++L + ++ A + +V DT + T ++K + T G +P
Sbjct: 38 VTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKSKPGQDFFPLTVNYQERTYAAGRIPG 97
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
S R GR R+I R +R + + Q+I +
Sbjct: 98 SFFRR------EGRPSEGETLTSRLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVNPDIV 151
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+ GA A G + A G L +++ E +D
Sbjct: 152 AMIGASAA-------------LALSGLPFNGPIGAARVGYLNDQYVLNPTSDELKESKLD 198
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
T G ++ V+ AE + ++ + D+ +I +++
Sbjct: 199 LVVAGTK-GAVLMVESEAELLS--EEQMLGAVVFGHDQQQIVIDNINALVAE 247
>gi|218131390|ref|ZP_03460194.1| hypothetical protein BACEGG_03006 [Bacteroides eggerthii DSM 20697]
gi|217986322|gb|EEC52659.1| hypothetical protein BACEGG_03006 [Bacteroides eggerthii DSM 20697]
Length = 770
Score = 148 bits (373), Expect = 6e-34, Method: Composition-based stats.
Identities = 48/243 (19%), Positives = 86/243 (35%), Gaps = 18/243 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHG 57
RL GR+ ++R I GS + G+T L+T T L+EK+ +
Sbjct: 370 RLDGRKTTEIRPIWCEIGYLPGPHGSAIFTRGETQSLSTVTLGTKLDEKIIDDVLEHGKE 429
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P STG + V R+ G RAL+ + + + D
Sbjct: 430 RFLLHYNFPPFSTGEAKAQRGVGRREIGHGHL----AWRALKGQIPADY--PYVVRVVSD 483
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+++++G + A + +AL D ++ + + + G + D+
Sbjct: 484 ILESNGSSSMATVCAGTLALMDAGVKIKKPVSGIAMGLIKN-------AGEEKYAVLSDI 536
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T G I Q + S + L AK+ ++ +
Sbjct: 537 LGDEDHLGDMDFKVTGTKDG-ITATQMDIKVDGLSYEILEKALLQAKEGREYILSKITEC 595
Query: 238 ISN 240
I+
Sbjct: 596 IAE 598
Score = 107 bits (267), Expect = 1e-21, Method: Composition-based stats.
Identities = 41/245 (16%), Positives = 80/245 (32%), Gaps = 34/245 (13%)
Query: 3 LSGRQENQMREISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----HG 57
GR I+L ++K A+GS +++ G+T LL T + +
Sbjct: 63 PDGRT------ITLETGKLAKQADGSVMLRMGNTMLLATVCAAKDAVPGTDFMPLQVEYK 116
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
+ +G P R GR R++ RALR + +
Sbjct: 117 EKFSAFGRFPGGFTKR------EGRASDYEILTCRLVDRALRPLFPDNFHAEVY------ 164
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ V + D L + + G ++ + + G +++
Sbjct: 165 -------VNIILFSADGVDMPDALAGLAASAALAVSDIPFNGPISEVRVARINGEFVINP 217
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
+ + D+D T +I+ V+ E S+ + A + I K Q +
Sbjct: 218 TFDQLEKADMDLMVGATYE-NIMMVE--GEMNEVSEKDLLEAMKAAHEAIKIQCKAQME- 273
Query: 238 ISNEV 242
++ EV
Sbjct: 274 LAEEV 278
>gi|308068706|ref|YP_003870311.1| polyribonucleotide nucleotidyltransferase (polynucleotide
phosphorylase) [Paenibacillus polymyxa E681]
gi|305857985|gb|ADM69773.1| Polyribonucleotide nucleotidyltransferase (Polynucleotide
phosphorylase) [Paenibacillus polymyxa E681]
Length = 700
Score = 148 bits (373), Expect = 6e-34, Method: Composition-based stats.
Identities = 44/242 (18%), Positives = 83/242 (34%), Gaps = 18/242 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56
+R GR+ +++R I + GS L G T L+ T + ++ I +
Sbjct: 313 VRPDGRKLDEIRPIESDTSILPRTHGSGLFTRGQTQALSICTLGALGDVQILDGIDLEET 372
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P S G A R+ G RAL V+ I +
Sbjct: 373 KRFMHHYNFPPFSVGEARPLRAPGRREIGHGALG----ERALSKVIPSETEFPYTIRLVS 428
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V++++G T A+I + +A+ D ++ + + G ++
Sbjct: 429 EVLESNGSTSQASICASTLAMMDAGVPIKAPVAGVAMGLIKDGDHVSVLTD--------- 479
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T G + +Q + + L AK+ ++ +
Sbjct: 480 IQGMEDHLGDMDFKVAGTAEG-VTAIQMDIKINGIDRQILQDALKQAKEGRLFILSKMME 538
Query: 237 VI 238
I
Sbjct: 539 AI 540
Score = 106 bits (264), Expect = 3e-21, Method: Composition-based stats.
Identities = 36/231 (15%), Positives = 80/231 (34%), Gaps = 26/231 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATL---EEKVPMWIRNTKHGWITAEYGMLP 67
R++ L ++K A + V +G+T +L T T + + + + G +P
Sbjct: 12 RKLVLETGRLAKQANAAVKVSYGETVVLCTVTASREPKDLDFFPLTVNYEERLYAVGKIP 71
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R GR ++ R+ R +R + Q++ + D
Sbjct: 72 GGFIKR------EGRPSQKAILSSRLTDRPIRPLFPEGFRNDVQVLNLVMSVDQDCEPEI 125
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
AA+ G A G + ++ G + G +++ D + + D+
Sbjct: 126 AAMIGTSAA-------------LSISDVPFNGPIGGVAVGRVDGQFVINPDIAQQNASDL 172
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
T I+ V+ AE ++ + D I +++ + + ++
Sbjct: 173 YLVVAGTKD-AIMMVE--AEGNEIPEEVMLEAIMFGHDEIKNIVAVIEQLV 220
>gi|194014349|ref|ZP_03052966.1| polyribonucleotide nucleotidyltransferase [Bacillus pumilus ATCC
7061]
gi|194013375|gb|EDW22940.1| polyribonucleotide nucleotidyltransferase [Bacillus pumilus ATCC
7061]
Length = 705
Score = 148 bits (373), Expect = 6e-34, Method: Composition-based stats.
Identities = 45/242 (18%), Positives = 83/242 (34%), Gaps = 18/242 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56
+R GR +Q+R +S + GS L G T L+ T + ++ + +
Sbjct: 315 VRPDGRGVDQIRPLSSEVGLLPRTHGSGLFTRGQTQALSICTLGALGDVQILDGLGVEES 374
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y S G R+ G RAL V+ + +
Sbjct: 375 KRFMHHYNFPQFSVGETGPMRGPGRREIGHGALG----ERALEPVIPSEKDFPYTVRLVS 430
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V++++G T A+I + +A+ D ++ + V G + D
Sbjct: 431 EVLESNGSTSQASICASTLAMMDAGVPIKAPVAGIAMGLVKSGE---------YYTVLTD 481
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED+ D+D T G + +Q + S+D L AK +++
Sbjct: 482 IQGMEDALGDMDFKVAGTSKG-VTALQMDIKIDGLSKDILEEALQQAKKGRMEILDSMLS 540
Query: 237 VI 238
I
Sbjct: 541 TI 542
Score = 116 bits (290), Expect = 3e-24, Method: Composition-based stats.
Identities = 43/232 (18%), Positives = 92/232 (39%), Gaps = 26/232 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKV---PMWIRNTKHGWITAEYGMLP 67
R++++ ++K A G+ LV++GDT +L++AT ++ + + G +P
Sbjct: 15 RQLTVETGQLAKQANGAVLVRYGDTAVLSSATASKEPKPLDFFPLTVNYEERLYAVGKIP 74
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R GR ++ R+I R +R + Q+I + D +
Sbjct: 75 GGFIKR------EGRPSEKAILASRLIDRPIRPLFADGFRNEVQVISIVMSVDQDCSSEM 128
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
AA+ G+ +AL +G +A ++ G + G I++ + + D+
Sbjct: 129 AAMFGSSLALC-------------VSDIPFEGPIAGVTVGRVDGKFIINPNVEQLEQSDI 175
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
+ T I V+ A+ ++ + I LI+ Q++++
Sbjct: 176 NLVVAGTKD-AINMVEAGADEVP--EETMLEAIMYGHQEIKRLIEFQEEIVK 224
>gi|157692352|ref|YP_001486814.1| polynucleotide phosphorylase/polyadenylase [Bacillus pumilus
SAFR-032]
gi|187470936|sp|A8FDD7|PNP_BACP2 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|157681110|gb|ABV62254.1| polyribonucleotide nucleotidyltransferase [Bacillus pumilus
SAFR-032]
Length = 705
Score = 148 bits (373), Expect = 6e-34, Method: Composition-based stats.
Identities = 45/242 (18%), Positives = 83/242 (34%), Gaps = 18/242 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56
+R GR +Q+R +S + GS L G T L+ T + ++ + +
Sbjct: 315 VRPDGRGVDQIRPLSSEVGLLPRTHGSGLFTRGQTQALSICTLGALGDVQILDGLGVEES 374
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y S G R+ G RAL V+ + +
Sbjct: 375 KRFMHHYNFPQFSVGETGPMRGPGRREIGHGALG----ERALEPVIPSEKDFPYTVRLVS 430
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V++++G T A+I + +A+ D ++ + V G + D
Sbjct: 431 EVLESNGSTSQASICASTLAMMDAGVPIKAPVAGIAMGLVKSGE---------YYTVLTD 481
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED+ D+D T G + +Q + S+D L AK +++
Sbjct: 482 IQGMEDALGDMDFKVAGTSKG-VTALQMDIKIDGLSKDILEEALQQAKKGRMEILDSMLS 540
Query: 237 VI 238
I
Sbjct: 541 TI 542
Score = 116 bits (290), Expect = 3e-24, Method: Composition-based stats.
Identities = 43/232 (18%), Positives = 92/232 (39%), Gaps = 26/232 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKV---PMWIRNTKHGWITAEYGMLP 67
R++++ ++K A G+ LV++GDT +L++AT ++ + + G +P
Sbjct: 15 RQLTVETGQLAKQANGAVLVRYGDTAVLSSATASKEPKPLDFFPLTVNYEERLYAVGKIP 74
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R GR ++ R+I R +R + Q+I + D +
Sbjct: 75 GGFIKR------EGRPSEKAILASRLIDRPIRPLFADGFRNEVQVISIVMSVDQDCSSEM 128
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
AA+ G+ +AL +G +A ++ G + G I++ + + D+
Sbjct: 129 AAMFGSSLALC-------------VSDIPFEGPIAGVTVGRVDGKFIINPNVEQLEQSDI 175
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
+ T I V+ A+ ++ + I LI+ Q++++
Sbjct: 176 NLVVAGTKD-AINMVEAGADEVP--EETMLEAIMYGHQEIKRLIEFQEEIVK 224
>gi|110833194|ref|YP_692053.1| polynucleotide phosphorylase/polyadenylase [Alcanivorax borkumensis
SK2]
gi|123050749|sp|Q0VSR7|PNP_ALCBS RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|110646305|emb|CAL15781.1| polyribonucleotide nucleotidyltransferase [Alcanivorax borkumensis
SK2]
Length = 697
Score = 148 bits (373), Expect = 6e-34, Method: Composition-based stats.
Identities = 42/243 (17%), Positives = 82/243 (33%), Gaps = 17/243 (6%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR + +R I GS L G+T + TATL + + + +
Sbjct: 316 RIDGRALDAVRAIDCQVGTLAKTHGSALFTRGETQAIVTATLGGMRDAQFIDALEGSHQD 375
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
+Y P G + R+ G + R + +VV I + +
Sbjct: 376 HFMLQYNFPPYCVGETGFIGSPKRREIGHGRL----ARRGVEAVVPSVQDFPYTIRVVSE 431
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ G +AL D + + V + + D+
Sbjct: 432 ITESNGSSSMASVCGTSMALMDAGVPLTAPVAGIAMGLVKEED--------GRYAVLSDI 483
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T G + +Q + +++ LN A ++
Sbjct: 484 LGDEDHLGDMDFKVAGTARG-VTALQMDIKIEGITEEIMEKALNQANAGRLHILGEMNKA 542
Query: 238 ISN 240
I+
Sbjct: 543 IAE 545
Score = 103 bits (257), Expect = 2e-20, Method: Composition-based stats.
Identities = 41/237 (17%), Positives = 79/237 (33%), Gaps = 32/237 (13%)
Query: 5 GRQENQMREISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPM----WIRNTKHGWI 59
GR ++L +++ A + +V+ GDT +L T ++ + +
Sbjct: 12 GRDT-----VTLETGQIARQATAAVMVRIGDTQVLVTVVGRKEANPGQNFFPLTVNYQEK 66
Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119
T G +P R GR + R+I R +R + + Q++
Sbjct: 67 TYATGRIPGGFLKR------EGRPSEKETLTCRLIDRPIRPLFPKGFMNEVQVVATVMSS 120
Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179
+ AA+ G A G + A G G I++ Y
Sbjct: 121 DKNRDPDIAALIGTSAA-------------LSISGIPFSGPIGAARVGYKDGMYILNPSY 167
Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
E + +D T+ ++ V+ A+ S+D + + LI+ K+
Sbjct: 168 SELAESALDLVVAGTEP-AVLMVESEAQE--LSEDQMLGAVLFGHMEMQPLIQGIKE 221
>gi|262401655|ref|ZP_06078221.1| polyribonucleotide nucleotidyltransferase [Vibrio sp. RC586]
gi|262352072|gb|EEZ01202.1| polyribonucleotide nucleotidyltransferase [Vibrio sp. RC586]
Length = 709
Score = 148 bits (373), Expect = 6e-34, Method: Composition-based stats.
Identities = 43/242 (17%), Positives = 91/242 (37%), Gaps = 18/242 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR+++ +R + + V GS L G+T L TATL + ++ + K
Sbjct: 316 RIDGREKDMVRALDVRTGVLPRTHGSALFTRGETQALVTATLGTQRDAQIIDELTGEKKD 375
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P G + R+ G + R + +V+ + + +
Sbjct: 376 HFLLHYNFPPYCVGETGFVGSPKRREIGHGRL----AKRGIAAVMPSVDEFPYTVRVVSE 431
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ G+ +AL D ++ + V + + + +
Sbjct: 432 ITESNGSSSMASVCGSSLALMDAGVPIKASVAGIAMGLVKEENDFVVLSD---------I 482
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T +G + +Q + +++ LN AK ++ +
Sbjct: 483 LGDEDHLGDMDFKVAGTATG-VTALQMDIKIEGITKEIMQIALNQAKGARLHILSVMDQA 541
Query: 238 IS 239
IS
Sbjct: 542 IS 543
Score = 87.6 bits (215), Expect = 2e-15, Method: Composition-based stats.
Identities = 32/228 (14%), Positives = 71/228 (31%), Gaps = 27/228 (11%)
Query: 14 ISLTRRV-SKYAEGSCLVKFGDTHLLTTATLEEKV----PMWIRNTKHGWITAEYGMLPR 68
++L V ++ A + + DT + + +++ + + T G +P
Sbjct: 17 VTLETGVMARQATAAVMATMDDTAVFVSVVGKKEAVVGQDFFPLTVNYQERTYAAGKIPG 76
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
R GR R+I R +R + Q+I+ + D
Sbjct: 77 GFFKR------EGRPSEGETLTARLIDRPIRPLFPDGFTNEVQVIVTVVSVNPDVQPDII 130
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
++ G A G + A G + G +++ E +D
Sbjct: 131 SMIGTSAA-------------LAISGLPFNGPIGAARVGHIDGQLVLNPSEKELKQSRLD 177
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
T ++ V+ A+ +++ A + D+ +I +
Sbjct: 178 LVVAGT-DNAVLMVESEAQI--LTEEEMLAAVVFGHDQQQAVINAINE 222
>gi|78485473|ref|YP_391398.1| polynucleotide phosphorylase/polyadenylase [Thiomicrospira
crunogena XCL-2]
gi|123755229|sp|Q31GJ9|PNP_THICR RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|78363759|gb|ABB41724.1| Polyribonucleotide nucleotidyltransferase [Thiomicrospira crunogena
XCL-2]
Length = 694
Score = 148 bits (373), Expect = 6e-34, Method: Composition-based stats.
Identities = 38/239 (15%), Positives = 81/239 (33%), Gaps = 10/239 (4%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R+ GR +R I + GS L G+T + TL + + + G
Sbjct: 317 RIDGRDTQTIRSIDCQVGILPKVHGSALFTRGETQAIVVTTLGTEKDAKMVDDLTGSYND 376
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
+ + V G G R + R + +++ + I + ++ ++
Sbjct: 377 RFMLHYNFPPYSVGECGRVGSPGRREIGHGMLARRGVAALLPTADEFPYTIRVVSEITES 436
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
+G + A + G ++L + + V + A+ + E
Sbjct: 437 NGSSSMATVCGTSMSLMHAGVPLAAPIAGIAMGLVKEESGFAVLSD---------ILGDE 487
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
D D+D T+ G + +Q + +Q+ L AK+ ++K + I +
Sbjct: 488 DHLGDMDFKVAGTEQG-VTALQMDIKITGITQEIMHIALKQAKEGRLHILKEMEKAIGS 545
Score = 91.8 bits (226), Expect = 8e-17, Method: Composition-based stats.
Identities = 39/235 (16%), Positives = 76/235 (32%), Gaps = 28/235 (11%)
Query: 13 EISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----HGWITAEYGMLP 67
E+ +++ A+G+ +V GDT LL T + + G +P
Sbjct: 14 EVRFETGEIARQADGAVMVAMGDTQLLVTVVGAKNAKAGQDFFPLTVQYQEKAYAAGRIP 73
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R GR + R+I R +R + + Q+I + + GT
Sbjct: 74 GGFLKR------EGRPSEKETLTSRLIDRPIRPLFPKGFMNEVQVIATVVSLDPEIGTEV 127
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
A+ G A G + A G I++ E D+
Sbjct: 128 PAMLGTSAA-------------LSISGIPFDGPIGAAVVGYKDNDYILNPSSQELQESDL 174
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNEV 242
+ + T ++ V+ A + ++ + +++ I K+ + EV
Sbjct: 175 ELSVAGTSD-AVLMVESEASELS--EEIMLGAVMFGHEQMQVAIDAIKE-LKAEV 225
>gi|237709532|ref|ZP_04540013.1| polyribonucleotide nucleotidyltransferase [Bacteroides sp.
9_1_42FAA]
gi|237724873|ref|ZP_04555354.1| polyribonucleotide nucleotidyltransferase [Bacteroides sp. D4]
gi|229436611|gb|EEO46688.1| polyribonucleotide nucleotidyltransferase [Bacteroides dorei
5_1_36/D4]
gi|229456588|gb|EEO62309.1| polyribonucleotide nucleotidyltransferase [Bacteroides sp.
9_1_42FAA]
Length = 711
Score = 148 bits (373), Expect = 6e-34, Method: Composition-based stats.
Identities = 49/243 (20%), Positives = 87/243 (35%), Gaps = 18/243 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHG 57
RL GR+ ++R I GS + G+T LT+ T L+EK+ + +
Sbjct: 319 RLDGRKTTEIRPIWCEVGYLPGPHGSAIFTRGETQSLTSVTLGTKLDEKIVDDVLDQHRE 378
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P STG + V R+ G RAL+ + + + D
Sbjct: 379 RFLLHYNFPPYSTGEAKAQRGVGRREIGHGHL----AWRALKGQIPAGY--PYTVRVVSD 432
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+++++G + A + +AL D M+ + + + G + D+
Sbjct: 433 IMESNGSSSMATVCAGTLALMDAGVAMKKPVSGIAMGLIKN-------AGEEKYAVLSDI 485
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T G I Q + S + L AK+ ++ +
Sbjct: 486 LGDEDHLGDMDFKVTGTRDG-ITATQMDIKVDGLSFEILEKALLQAKEGREHILNKLTEC 544
Query: 238 ISN 240
I+
Sbjct: 545 IAE 547
Score = 103 bits (256), Expect = 3e-20, Method: Composition-based stats.
Identities = 38/241 (15%), Positives = 73/241 (30%), Gaps = 26/241 (10%)
Query: 3 LSGRQENQMREISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
GR I+L ++K A+GS +++ G+T LL T +
Sbjct: 12 PDGRT------ITLETGKLAKQADGSVMLRMGNTMLLATVCAAKDAVPGTDFMPLQVEYK 65
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
E G+ R++ RALR + + + I
Sbjct: 66 EKYSAFGRFP--GGFTKREGKASDYEILTCRLVDRALRPLFPDNFHAEVYVNIVLFSADG 123
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
L + + G ++ + + G +++ + +
Sbjct: 124 IDMPDA-------------LAGLAASAALAVSDIPFGGPISEVRVARIDGQFVINPTFEQ 170
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
D+D T +I+ V+ E S+ A + A + I K Q + + E
Sbjct: 171 LGKADMDLMVAATYD-NIMMVE--GEMQEVSEQDLLAAMKAAHEAIKVHCKAQME-LMEE 226
Query: 242 V 242
V
Sbjct: 227 V 227
>gi|33864812|ref|NP_896371.1| ribonuclease PH [Synechococcus sp. WH 8102]
gi|61216015|sp|Q7U9I1|RNPH_SYNPX RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|33632335|emb|CAE06791.1| ribonuclease PH [Synechococcus sp. WH 8102]
Length = 249
Score = 148 bits (373), Expect = 6e-34, Method: Composition-based stats.
Identities = 103/238 (43%), Positives = 149/238 (62%), Gaps = 4/238 (1%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R GR ++R S+ +A S +V+ G T +L + +LEE VP W R GW++A
Sbjct: 8 RADGRGATELRPFSVDWDPMSFALSSLIVRTGRTAVLCSVSLEEDVPRWRRGNGCGWLSA 67
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
EY +LP ST R R + GR+QEIQR+IGR+LR+V+D+ ALG R ++IDCDVIQA
Sbjct: 68 EYRLLPGSTPQRQSR--ELMKLSGRTQEIQRLIGRSLRAVLDMDALGERTLLIDCDVIQA 125
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
D GTRTA+ITGAW+AL + ++ +AA+S G++ G P++DLDY E
Sbjct: 126 DAGTRTASITGAWIALRRACDLLRS--QGVLTQDPIRQQLAAVSVGLIDGTPLLDLDYSE 183
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
DS DVD N V G ++E+QG+AE+A FS+ AMLNLA+ + +L++ Q+ ++
Sbjct: 184 DSRADVDLNVVTAGDGRLLELQGTAEQAPFSRSELDAMLNLAESGLQELMQGQRHALA 241
>gi|329956655|ref|ZP_08297228.1| polyribonucleotide nucleotidyltransferase [Bacteroides clarus YIT
12056]
gi|328524027|gb|EGF51103.1| polyribonucleotide nucleotidyltransferase [Bacteroides clarus YIT
12056]
Length = 753
Score = 148 bits (373), Expect = 6e-34, Method: Composition-based stats.
Identities = 48/243 (19%), Positives = 86/243 (35%), Gaps = 18/243 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHG 57
RL GR+ ++R I GS + G+T L+T T L+EK+ +
Sbjct: 356 RLDGRKTTEIRPIWCEIGYLPGPHGSAIFTRGETQSLSTVTLGTKLDEKIIDDVLEHGKE 415
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P STG + V R+ G RAL+ + + + D
Sbjct: 416 RFLLHYNFPPFSTGEAKAQRGVGRREIGHGHL----AWRALKGQIPADY--PYVVRVVSD 469
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+++++G + A + +AL D ++ + + + G + D+
Sbjct: 470 ILESNGSSSMATVCAGTLALMDAGVKIKKPVSGIAMGLIKN-------AGEEKYAVLSDI 522
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T G I Q + S + L AK+ ++ +
Sbjct: 523 LGDEDHLGDMDFKVTGTKDG-ITATQMDIKVDGLSYEILEKALLQAKEGREYILSKITEC 581
Query: 238 ISN 240
I+
Sbjct: 582 IAE 584
Score = 108 bits (268), Expect = 9e-22, Method: Composition-based stats.
Identities = 41/245 (16%), Positives = 80/245 (32%), Gaps = 34/245 (13%)
Query: 3 LSGRQENQMREISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----HG 57
GR I+L ++K A+GS +++ G+T LL T + +
Sbjct: 49 PDGRT------ITLETGKLAKQADGSVMLRMGNTMLLATVCAAKDAVPGTDFMPLQVEYK 102
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
+ +G P R GR R++ RALR + +
Sbjct: 103 EKFSAFGRFPGGFTKR------EGRASDYEILTCRLVDRALRPLFPDNFHAEVY------ 150
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ V + D L + + G ++ + + G +++
Sbjct: 151 -------VNIILFSADGVDMPDALAGLAASAALAVSDIPFNGPISEVRVARINGEFVINP 203
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
+ + D+D T +I+ V+ E S+ + A + I K Q +
Sbjct: 204 TFEQLEKADMDLMVGATYE-NIMMVE--GEMDEVSEKDLLEAMKAAHEAIKIQCKAQME- 259
Query: 238 ISNEV 242
++ EV
Sbjct: 260 LAEEV 264
>gi|297584087|ref|YP_003699867.1| polyribonucleotide nucleotidyltransferase [Bacillus
selenitireducens MLS10]
gi|297142544|gb|ADH99301.1| polyribonucleotide nucleotidyltransferase [Bacillus
selenitireducens MLS10]
Length = 700
Score = 148 bits (373), Expect = 6e-34, Method: Composition-based stats.
Identities = 42/244 (17%), Positives = 83/244 (34%), Gaps = 18/244 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56
+R GR+ +++R +S + A GS L G T L+ T + ++ + +
Sbjct: 315 IRPDGRKVDEIRPLSSEVDILPRAHGSGLFTRGQTQALSVCTLGALGDVQILDGLGIEES 374
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y S G R+ G RAL V+ I +
Sbjct: 375 KRFMHHYNFPQFSVGETGPIRGPGRREIGHGALG----ERALEQVIPSEKDFPYTIRLVS 430
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V++++G T A+I + +A+ + + V G +
Sbjct: 431 EVLESNGSTSQASICASTMAMMAAGVPITSPVAGIAMGLVKHGEDMTVLTD--------- 481
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED+ D+D T G + +Q + +++ + L A+D ++
Sbjct: 482 IQGMEDALGDMDFKVAGTKDG-VTALQMDIKIEGINREVLKSALEQARDGRLKILDNMLS 540
Query: 237 VISN 240
I
Sbjct: 541 AIPE 544
Score = 115 bits (287), Expect = 5e-24, Method: Composition-based stats.
Identities = 46/233 (19%), Positives = 88/233 (37%), Gaps = 26/233 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATL---EEKVPMWIRNTKHGWITAEYGMLP 67
R +S +K A G+ +VK+GDT +L+TAT + +P + + G +P
Sbjct: 15 RTLSFEVGKYAKQANGAVMVKYGDTTVLSTATGSKEPKDLPFFPLTVNYEERLYAAGKIP 74
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R GR + R+I R +R + Q+I + +
Sbjct: 75 GGFIKR------EGRPSDNAVLTSRLIDRPIRPLFPDGYRNDVQVISIVMSSDQNASSEM 128
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
AA+ G+ +A G +A ++ G + G I++ + + D+
Sbjct: 129 AAMIGSSMA-------------LSISDIPFGGPIAGVTVGRVNGEFIINPTTTQMADSDI 175
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
D T + V+ AE+ ++ + D I L+ Q+++I+
Sbjct: 176 DLIVAGTKD-AVNMVEAGAEQVP--EEDMMDAILFGHDEIKRLVAFQEEIIAE 225
>gi|261212242|ref|ZP_05926528.1| polyribonucleotide nucleotidyltransferase [Vibrio sp. RC341]
gi|260838850|gb|EEX65501.1| polyribonucleotide nucleotidyltransferase [Vibrio sp. RC341]
Length = 709
Score = 148 bits (373), Expect = 6e-34, Method: Composition-based stats.
Identities = 43/242 (17%), Positives = 91/242 (37%), Gaps = 18/242 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR+++ +R + + V GS L G+T L TATL + ++ + K
Sbjct: 316 RIDGREKDMVRALDVRTGVLPRTHGSALFTRGETQALVTATLGTQRDAQIIDELTGEKKD 375
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P G + R+ G + R + +V+ + + +
Sbjct: 376 HFLLHYNFPPYCVGETGFVGSPKRREIGHGRL----AKRGIAAVMPSVDEFPYTVRVVSE 431
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ G+ +AL D ++ + V + + + +
Sbjct: 432 ITESNGSSSMASVCGSSLALMDAGVPIKASVAGIAMGLVKEENDFVVLSD---------I 482
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T +G + +Q + +++ LN AK ++ +
Sbjct: 483 LGDEDHLGDMDFKVAGTATG-VTALQMDIKIEGITKEIMQIALNQAKGARLHILSVMDQA 541
Query: 238 IS 239
IS
Sbjct: 542 IS 543
Score = 87.2 bits (214), Expect = 2e-15, Method: Composition-based stats.
Identities = 32/228 (14%), Positives = 71/228 (31%), Gaps = 27/228 (11%)
Query: 14 ISLTRRV-SKYAEGSCLVKFGDTHLLTTATLEEKV----PMWIRNTKHGWITAEYGMLPR 68
++L V ++ A + + DT + + +++ + + T G +P
Sbjct: 17 VTLETGVMARQATAAVMATMDDTAVFVSVVGKKEAVVGQDFFPLTVNYQERTYAAGKIPG 76
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
R GR R+I R +R + Q+I+ + D
Sbjct: 77 GFFKR------EGRPSEGETLTARLIDRPIRPLFPDGFTNEVQVIVTVVSVNPDVQPDII 130
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
++ G A G + A G + G +++ E +D
Sbjct: 131 SMIGTSAA-------------LAISGLPFNGPIGAARVGHIDGQLVLNPSEKELKQSRLD 177
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
T ++ V+ A+ +++ A + D+ +I +
Sbjct: 178 LVVAGT-DNAVLMVESEAQI--LTEEEMLAAVVFGHDQQQAVINAINE 222
>gi|88856298|ref|ZP_01130957.1| ribonuclease PH [marine actinobacterium PHSC20C1]
gi|88814382|gb|EAR24245.1| ribonuclease PH [marine actinobacterium PHSC20C1]
Length = 255
Score = 148 bits (373), Expect = 6e-34, Method: Composition-based stats.
Identities = 113/237 (47%), Positives = 156/237 (65%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R GR+ N++R++++ R S AEGS L+ FG T +L TA+ VP W+ GW+TA
Sbjct: 3 RHDGRENNELRKVTIERGWSDQAEGSALISFGKTKVLCTASFTNGVPRWMAGKGKGWVTA 62
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
EY MLPRST +R+ REAV G+ GGR+ EI R+IGR+LR+VVD+ ALG I+IDCDV+QA
Sbjct: 63 EYSMLPRSTNSRMDREAVKGKVGGRTHEISRLIGRSLRAVVDMKALGENTIVIDCDVLQA 122
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
DGGTRTAAITGA+VAL D ++ + + S+ L +AA+S G++ G P++DL Y E
Sbjct: 123 DGGTRTAAITGAYVALADAIEWGREKKFIGKNSKALFDSLAAVSVGIIDGEPMLDLAYVE 182
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
D + D N V+T G VEVQG+AE A F + ++L+LA DL +Q +
Sbjct: 183 DVRAETDMNVVVTGRGLFVEVQGTAEGAPFDRRELDSLLDLALAGAVDLTAMQVASL 239
>gi|163754268|ref|ZP_02161391.1| polynucleotide phosphorylase/polyadenylase [Kordia algicida OT-1]
gi|161326482|gb|EDP97808.1| polynucleotide phosphorylase/polyadenylase [Kordia algicida OT-1]
Length = 746
Score = 148 bits (373), Expect = 6e-34, Method: Composition-based stats.
Identities = 48/243 (19%), Positives = 83/243 (34%), Gaps = 18/243 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
+RL GR+ +++R I GS + G+T L T TL E
Sbjct: 317 LRLDGRKTDEIRPIWCEVDYLPSTHGSSIFTRGETQALATVTLGTSREANQIDMPSYEGE 376
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P STG S R+ G RAL+ +V + +
Sbjct: 377 ERFYLHYNFPPFSTGEARPIRGTSRREVGHGNL----AQRALKGMVP--EDCPYTVRVVS 430
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V++++G + A + +AL D ++ + + + + D
Sbjct: 431 EVLESNGSSSMATVCSGTMALMDAGVQLKKPVSGIAMGLISDADSG-------KYAVLSD 483
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T G I Q + S + L A+D +++ D
Sbjct: 484 ILGDEDHLGDMDFKVTGTADG-ITACQMDIKVKGLSYEILVNALKQARDGRLHILEKLTD 542
Query: 237 VIS 239
I+
Sbjct: 543 TIA 545
Score = 104 bits (258), Expect = 1e-20, Method: Composition-based stats.
Identities = 37/242 (15%), Positives = 71/242 (29%), Gaps = 29/242 (11%)
Query: 7 QENQMREISLTRR-VSKYAEGSCLVKFGDTHLLTTA---TLEEKVPMWIRNTKHGWITAE 62
REIS+ ++K A GS +V+ G LL T + V + A
Sbjct: 11 DLGDGREISIETGKLAKQAHGSVVVQSGKCMLLCTVVSNYKQSDVDFLPLTVDYREKFAA 70
Query: 63 YGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQAD 122
G P R R R++ R LR + Q++I +
Sbjct: 71 AGRYPGGFFKR------EARPSDGEVLTMRLVDRVLRPLFPKDYHAETQVMIQLMSHDPE 124
Query: 123 GGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGED 182
+ + + + ++ G + G I++ +
Sbjct: 125 VMPDA-------------MAGLAASAAIQLSDFPFECAISEARVGRINGEFIINPTRAQL 171
Query: 183 STIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ---KDVIS 239
D+D + ++ V+ E S++ + A + I Q + I
Sbjct: 172 EESDIDMMI-GASADSVMMVE--GEMDEISEEEMTEAIKFAHEAIKVQCAAQLRLAEAIG 228
Query: 240 NE 241
+
Sbjct: 229 KK 230
>gi|294634519|ref|ZP_06713054.1| polyribonucleotide nucleotidyltransferase [Edwardsiella tarda ATCC
23685]
gi|291092033|gb|EFE24594.1| polyribonucleotide nucleotidyltransferase [Edwardsiella tarda ATCC
23685]
Length = 713
Score = 148 bits (373), Expect = 6e-34, Method: Composition-based stats.
Identities = 42/242 (17%), Positives = 89/242 (36%), Gaps = 18/242 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVP----MWIRNTKHG 57
R+ GR+++ +R + + V GS L G+T L TATL + + +
Sbjct: 321 RIDGREKDMIRALDVRTGVLPRTHGSALFTRGETQALVTATLGTERDAQNIDELMGERTD 380
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + R+ G + R + +V+ + + +
Sbjct: 381 RFLLHYNFPPYSVGETGMMGSPKRREIGHGRL----AKRGVLAVMPSQEEFPYTVRVVSE 436
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ GA +AL D ++ + V + + +
Sbjct: 437 ITESNGSSSMASVCGASLALMDAGVPVKAAVAGIAMGLVKEQDNFVVLSD---------I 487
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D + G + +Q + +++ LN AK ++ + +
Sbjct: 488 LGDEDHLGDMDFKVAGSRDG-VTALQMDIKIEGITREIMQVALNQAKGARLHILSVMEQA 546
Query: 238 IS 239
I+
Sbjct: 547 IN 548
Score = 88.4 bits (217), Expect = 8e-16, Method: Composition-based stats.
Identities = 37/230 (16%), Positives = 70/230 (30%), Gaps = 20/230 (8%)
Query: 14 ISLTRRV-SKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGN 72
++L + ++ A + +V DT + T +K E
Sbjct: 22 VTLETGMMARQATAAVMVTMDDTAVFVTVVGAKKAREGQDFFPLTVNYQERAYAAGRFP- 80
Query: 73 RVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITG 132
GR G I R+I R +R + L Q++ + A+ G
Sbjct: 81 -GGFFRREGRPGEGETLIARLIDRPIRPLFPEGFLNEVQVVATVVSVNPQVSPDIVAMIG 139
Query: 133 AWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFV 192
A A G + A G + +++ E +D
Sbjct: 140 ASAA-------------LTLSGIPFNGPIGAARVGYINDQYVLNPTQDELKQSRLDLVVA 186
Query: 193 MTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNEV 242
T ++ V+ +E S+D + D+ +I+ K ++ EV
Sbjct: 187 GT-DNAVLMVE--SEADLLSEDQMLGAVVFGHDQQQVVIENIK-ALAAEV 232
>gi|258620317|ref|ZP_05715355.1| polyribonucleotide nucleotidyltransferase [Vibrio mimicus VM573]
gi|258587196|gb|EEW11907.1| polyribonucleotide nucleotidyltransferase [Vibrio mimicus VM573]
Length = 709
Score = 148 bits (373), Expect = 6e-34, Method: Composition-based stats.
Identities = 43/242 (17%), Positives = 91/242 (37%), Gaps = 18/242 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR+++ +R + + V GS L G+T L TATL + ++ + K
Sbjct: 316 RIDGREKDMVRALDVRTGVLPRTHGSALFTRGETQALVTATLGTQRDAQIIDELTGEKKD 375
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P G + R+ G + R + +V+ + + +
Sbjct: 376 HFLLHYNFPPYCVGETGFVGSPKRREIGHGRL----AKRGIAAVMPSVDEFPYTVRVVSE 431
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ G+ +AL D ++ + V + + + +
Sbjct: 432 ITESNGSSSMASVCGSSLALMDAGVPIKASVAGIAMGLVKEENDFVVLSD---------I 482
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T +G + +Q + +++ LN AK ++ +
Sbjct: 483 LGDEDHLGDMDFKVAGTATG-VTALQMDIKIEGITKEIMQIALNQAKGARLHILSVMDQA 541
Query: 238 IS 239
IS
Sbjct: 542 IS 543
Score = 91.1 bits (224), Expect = 1e-16, Method: Composition-based stats.
Identities = 32/228 (14%), Positives = 70/228 (30%), Gaps = 27/228 (11%)
Query: 14 ISLTRRV-SKYAEGSCLVKFGDTHLLTTATLEEKV----PMWIRNTKHGWITAEYGMLPR 68
++L V ++ A + + DT + + +++ + + T G +P
Sbjct: 17 VTLETGVMARQATAAVMATMDDTAVFVSVVGKKEAVVGQDFFPLTVNYQERTYAAGKIPG 76
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
R GR R+I R +R + Q+I + D
Sbjct: 77 GFFKR------EGRPSEGETLTARLIDRPIRPLFPDGFTNEVQVIATVVSVNPDVQPDII 130
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
++ G A G + A G + G +++ E +D
Sbjct: 131 SMIGTSAA-------------LAISGLPFNGPIGAARVGHIDGQLVLNPSEKELKQSRLD 177
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
T ++ V+ A+ +++ A + D+ +I +
Sbjct: 178 LVVAGT-DNAVLMVESEAQI--LTEEEMLAAVVFGHDQQQAVINAINE 222
>gi|229086359|ref|ZP_04218536.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus
Rock3-44]
gi|228696971|gb|EEL49779.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus
Rock3-44]
Length = 717
Score = 148 bits (373), Expect = 6e-34, Method: Composition-based stats.
Identities = 43/244 (17%), Positives = 85/244 (34%), Gaps = 18/244 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56
+R GR+ +++R ++ + GS L G T L+ T + ++ + +
Sbjct: 315 IRPDGRKSDEVRPLASEVGILSRTHGSGLFTRGQTQALSICTLGALGDVQILDGLGVEES 374
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y S G R+ G RAL V+ + +
Sbjct: 375 KRFMHHYNFPSFSVGETRPMRGPGRREIGHGALG----ERALEPVIPSEQDFPYTVRLVS 430
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V++++G T A+I G+ +A+ D ++ + V G + D
Sbjct: 431 EVLESNGSTSQASICGSTLAMMDAGVPLKAPVAGIAMGLVKSGE---------HYTILTD 481
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T +G + +Q + S++ L AK ++
Sbjct: 482 IQGMEDHLGDMDFKVAGTANG-VTALQMDIKIDGLSREILEEALQQAKIGRMHILDHMLT 540
Query: 237 VISN 240
I+
Sbjct: 541 AIAE 544
Score = 113 bits (282), Expect = 2e-23, Method: Composition-based stats.
Identities = 42/231 (18%), Positives = 89/231 (38%), Gaps = 26/231 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATL---EEKVPMWIRNTKHGWITAEYGMLP 67
R++++ ++K A G+ LV++GDT +L+TAT + V + + G +P
Sbjct: 15 RQLTIETGQLAKQANGAVLVRYGDTAVLSTATASKEPKNVDFFPLTVNYEERLYAVGKIP 74
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R GR ++ R+I R +R + Q++ + D +
Sbjct: 75 GGFIKR------EGRPSEKAILASRLIDRPIRPLFADGFRNEVQVVSIVMSVDQDCSSEM 128
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
AA+ G+ +A +G +A + G + G +++ + D+
Sbjct: 129 AAMLGSSLA-------------LSISDVPFEGPIAGATVGRIDGEFVINPTVEQQEKSDI 175
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
T I V+ A++ ++ + D I L+ Q++++
Sbjct: 176 HLVVAGTKD-AINMVEAGADQVP--EETMLEAIMFGHDEIKRLVAFQEEIV 223
>gi|283476842|emb|CAY72680.1| polyribonucleotide nucleotidyltransferase [Erwinia pyrifoliae DSM
12163]
Length = 738
Score = 148 bits (373), Expect = 6e-34, Method: Composition-based stats.
Identities = 44/242 (18%), Positives = 90/242 (37%), Gaps = 18/242 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR+++ +R + + V GS L G+T L TATL + + + +
Sbjct: 343 RIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQNLDELMGERTD 402
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + R+ G + R + +V+ + + +
Sbjct: 403 NFLFHYNFPPYSVGETGMVGSPKRREIGHGRL----AKRGVLAVMPKGDAFPYTVRVVSE 458
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ GA +AL D ++ + V + + +
Sbjct: 459 ITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKDDNNFVVLSD---------I 509
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D + G I +Q + +++ LN AK ++ + +
Sbjct: 510 LGDEDHLGDMDFKVAGSREG-ITALQMDIKIEGITREIMQVALNQAKGARLHILSVMEQA 568
Query: 238 IS 239
IS
Sbjct: 569 IS 570
Score = 81.4 bits (199), Expect = 1e-13, Method: Composition-based stats.
Identities = 37/232 (15%), Positives = 73/232 (31%), Gaps = 27/232 (11%)
Query: 14 ISLTRRV-SKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----HGWITAEYGMLPR 68
++L + ++ A + +V DT + T ++K + T G +P
Sbjct: 44 VTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKSKPGQDFFPLTVNYQERTYAAGRIPG 103
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
S R GR R+I R +R + + Q+I +
Sbjct: 104 SFFRR------EGRPSEGETLTSRLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVNPDIV 157
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+ GA A G + A G L +++ E +D
Sbjct: 158 AMIGASAA-------------LALSGLPFNGPIGAARVGYLNDQYVLNPTSDELKESKLD 204
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
T G ++ V+ AE + ++ + D+ +I +++
Sbjct: 205 LVVAGTK-GAVLMVESEAELLS--EEQMLGAVVFGHDQQQIVIDNINALVAE 253
>gi|258624688|ref|ZP_05719622.1| polyribonucleotide nucleotidyltransferase [Vibrio mimicus VM603]
gi|258582975|gb|EEW07790.1| polyribonucleotide nucleotidyltransferase [Vibrio mimicus VM603]
Length = 709
Score = 148 bits (373), Expect = 6e-34, Method: Composition-based stats.
Identities = 43/242 (17%), Positives = 91/242 (37%), Gaps = 18/242 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR+++ +R + + V GS L G+T L TATL + ++ + K
Sbjct: 316 RIDGREKDMVRALDVRTGVLPRTHGSALFTRGETQALVTATLGTQRDAQIIDELTGEKKD 375
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P G + R+ G + R + +V+ + + +
Sbjct: 376 HFLLHYNFPPYCVGETGFVGSPKRREIGHGRL----AKRGIAAVMPSVDEFPYTVRVVSE 431
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ G+ +AL D ++ + V + + + +
Sbjct: 432 ITESNGSSSMASVCGSSLALMDAGVPIKASVAGIAMGLVKEENDFVVLSD---------I 482
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T +G + +Q + +++ LN AK ++ +
Sbjct: 483 LGDEDHLGDMDFKVAGTATG-VTALQMDIKIEGITKEIMQIALNQAKGARLHILSVMDQA 541
Query: 238 IS 239
IS
Sbjct: 542 IS 543
Score = 91.1 bits (224), Expect = 1e-16, Method: Composition-based stats.
Identities = 32/228 (14%), Positives = 70/228 (30%), Gaps = 27/228 (11%)
Query: 14 ISLTRRV-SKYAEGSCLVKFGDTHLLTTATLEEKV----PMWIRNTKHGWITAEYGMLPR 68
++L V ++ A + + DT + + +++ + + T G +P
Sbjct: 17 VTLETGVMARQATAAVMATMDDTAVFVSVVGKKEAVVGQDFFPLTVNYQERTYAAGKIPG 76
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
R GR R+I R +R + Q+I + D
Sbjct: 77 GFFKR------EGRPSEGETLTARLIDRPIRPLFPDGFTNEVQVIATVVSVNPDVQPDII 130
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
++ G A G + A G + G +++ E +D
Sbjct: 131 SMIGTSAA-------------LAISGLPFNGPIGAARVGHIDGQLVLNPSEKELKQSRLD 177
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
T ++ V+ A+ +++ A + D+ +I +
Sbjct: 178 LVVAGT-DNAVLMVESEAQI--LTEEEMLAAVVFGHDQQQAVINAINE 222
>gi|224367585|ref|YP_002601748.1| polynucleotide phosphorylase/polyadenylase [Desulfobacterium
autotrophicum HRM2]
gi|257096686|sp|C0QHM6|PNP_DESAH RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|223690301|gb|ACN13584.1| PnpA [Desulfobacterium autotrophicum HRM2]
Length = 695
Score = 148 bits (373), Expect = 6e-34, Method: Composition-based stats.
Identities = 46/242 (19%), Positives = 83/242 (34%), Gaps = 18/242 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +++REI+ V GS L G+T +L TL +E+ + +
Sbjct: 313 RIDGRAFDEVREITCEVGVLPRPHGSALFTRGETQVLGVLTLGSGPDEQRIETLNGNETR 372
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + S R G RAL V+ A I + +
Sbjct: 373 NFMLHYNFPPFSVGECRRAGGPSRRDVGHGNL----AHRALARVLPDQADFEYTIRLVGE 428
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
V++++G + + +AL D + + + V + +
Sbjct: 429 VMESNGSSSMGTVCAGTLALMDGGVPIAAPVSGIAMGLVSDADNTVVLTD---------I 479
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T+ G I +Q + + L+ A+ ++K
Sbjct: 480 LGDEDHFGDMDFKVAGTEQG-ITALQMDIKIRELPKAVLVKALDQARIGRLHILKRMLAT 538
Query: 238 IS 239
+
Sbjct: 539 LE 540
Score = 96.8 bits (239), Expect = 2e-18, Method: Composition-based stats.
Identities = 45/229 (19%), Positives = 82/229 (35%), Gaps = 28/229 (12%)
Query: 20 VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRN----TKHGWITAEYGMLPRSTGNRVK 75
++K A GS +V++G+T +L TA ++ + ++ G +P + R
Sbjct: 21 IAKQASGSVIVQYGETIVLVTAVAAKEARDSVSFLPLTVEYQEKIYAAGRIPGNYFRR-- 78
Query: 76 REAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWV 135
GR + R+I R +R + + Q+I + A+ GA
Sbjct: 79 ---EIGRPSEKETLTARLIDRPIRPLFEKGWASEIQVIATVISTDKENDPDVLALVGASA 135
Query: 136 ALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTD 195
AL G +A + G + G I + E D++ +
Sbjct: 136 ALQM-------------SDIPFAGPIAGLRVGRIDGKFIANPTVQEMENSDIELVVAGSK 182
Query: 196 SGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ---KDVISNE 241
+G +V V+G A S+ + + LI+LQ K + E
Sbjct: 183 TG-VVMVEGGA--DVVSEADMLEAIFFGHQAMQPLIQLQEDLKKALGKE 228
>gi|262163939|ref|ZP_06031678.1| polyribonucleotide nucleotidyltransferase [Vibrio mimicus VM223]
gi|262172277|ref|ZP_06039955.1| polyribonucleotide nucleotidyltransferase [Vibrio mimicus MB-451]
gi|261893353|gb|EEY39339.1| polyribonucleotide nucleotidyltransferase [Vibrio mimicus MB-451]
gi|262027467|gb|EEY46133.1| polyribonucleotide nucleotidyltransferase [Vibrio mimicus VM223]
Length = 709
Score = 148 bits (373), Expect = 6e-34, Method: Composition-based stats.
Identities = 43/242 (17%), Positives = 91/242 (37%), Gaps = 18/242 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR+++ +R + + V GS L G+T L TATL + ++ + K
Sbjct: 316 RIDGREKDMVRALDVRTGVLPRTHGSALFTRGETQALVTATLGTQRDAQIIDELTGEKKD 375
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P G + R+ G + R + +V+ + + +
Sbjct: 376 HFLLHYNFPPYCVGETGFVGSPKRREIGHGRL----AKRGIAAVMPSVDEFPYTVRVVSE 431
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ G+ +AL D ++ + V + + + +
Sbjct: 432 ITESNGSSSMASVCGSSLALMDAGVPIKASVAGIAMGLVKEENDFVVLSD---------I 482
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T +G + +Q + +++ LN AK ++ +
Sbjct: 483 LGDEDHLGDMDFKVAGTATG-VTALQMDIKIEGITKEIMQIALNQAKGARLHILSVMDQA 541
Query: 238 IS 239
IS
Sbjct: 542 IS 543
Score = 91.1 bits (224), Expect = 1e-16, Method: Composition-based stats.
Identities = 32/228 (14%), Positives = 70/228 (30%), Gaps = 27/228 (11%)
Query: 14 ISLTRRV-SKYAEGSCLVKFGDTHLLTTATLEEKV----PMWIRNTKHGWITAEYGMLPR 68
++L V ++ A + + DT + + +++ + + T G +P
Sbjct: 17 VTLETGVMARQATAAVMATMDDTAVFVSVVGKKEAVVGQDFFPLTVNYQERTYAAGKIPG 76
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
R GR R+I R +R + Q+I + D
Sbjct: 77 GFFKR------EGRPSEGETLTARLIDRPIRPLFPDGFTNEVQVIATVVSVNPDVQPDII 130
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
++ G A G + A G + G +++ E +D
Sbjct: 131 SMIGTSAA-------------LAISGLPFNGPIGAARVGHIDGQLVLNPSEKELKQSRLD 177
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
T ++ V+ A+ +++ A + D+ +I +
Sbjct: 178 LVVAGT-DNAVLMVESEAQI--LTEEEMLAAVVFGHDQQQAVINAINE 222
>gi|254880757|ref|ZP_05253467.1| polyribonucleotide nucleotidyltransferase [Bacteroides sp.
4_3_47FAA]
gi|294778033|ref|ZP_06743467.1| polyribonucleotide nucleotidyltransferase [Bacteroides vulgatus
PC510]
gi|319639767|ref|ZP_07994497.1| polyribonucleotide nucleotidyltransferase [Bacteroides sp. 3_1_40A]
gi|254833550|gb|EET13859.1| polyribonucleotide nucleotidyltransferase [Bacteroides sp.
4_3_47FAA]
gi|294448091|gb|EFG16657.1| polyribonucleotide nucleotidyltransferase [Bacteroides vulgatus
PC510]
gi|317388584|gb|EFV69433.1| polyribonucleotide nucleotidyltransferase [Bacteroides sp. 3_1_40A]
Length = 728
Score = 148 bits (373), Expect = 6e-34, Method: Composition-based stats.
Identities = 49/243 (20%), Positives = 87/243 (35%), Gaps = 18/243 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHG 57
RL GR+ ++R I GS + G+T LT+ T L+EK+ + +
Sbjct: 336 RLDGRKTTEIRPIWCEVGYLPGPHGSAIFTRGETQSLTSVTLGTKLDEKIVDDVLDQHRE 395
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P STG + V R+ G RAL+ + + + D
Sbjct: 396 RFLLHYNFPPYSTGEAKAQRGVGRREIGHGHL----AWRALKGQIPAGY--PYTVRVVSD 449
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+++++G + A + +AL D M+ + + + G + D+
Sbjct: 450 IMESNGSSSMATVCAGTLALMDAGVAMKKPVSGIAMGLIKN-------AGEEKYAVLSDI 502
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T G I Q + S + L AK+ ++ +
Sbjct: 503 LGDEDHLGDMDFKVTGTRDG-ITATQMDIKVDGLSFEILEKALLQAKEGREHILNKLTEC 561
Query: 238 ISN 240
I+
Sbjct: 562 IAE 564
Score = 103 bits (256), Expect = 2e-20, Method: Composition-based stats.
Identities = 38/241 (15%), Positives = 73/241 (30%), Gaps = 26/241 (10%)
Query: 3 LSGRQENQMREISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
GR I+L ++K A+GS +++ G+T LL T +
Sbjct: 29 PDGRT------ITLETGKLAKQADGSVMLRMGNTMLLATVCAAKDAVPGTDFMPLQVEYK 82
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
E G+ R++ RALR + + + I
Sbjct: 83 EKYSAFGRFP--GGFTKREGKASDYEILTCRLVDRALRPLFPDNFHAEVYVNIVLFSADG 140
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
L + + G ++ + + G +++ + +
Sbjct: 141 IDMPDA-------------LAGLAASAALAVSDIPFGGPISEVRVARIDGQFVINPTFEQ 187
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
D+D T +I+ V+ E S+ A + A + I K Q + + E
Sbjct: 188 LEKADMDLMVAATYD-NIMMVE--GEMQEVSEQDLLAAMKAAHEAIKVHCKAQME-LMEE 243
Query: 242 V 242
V
Sbjct: 244 V 244
>gi|314933453|ref|ZP_07840818.1| polyribonucleotide nucleotidyltransferase [Staphylococcus caprae
C87]
gi|313653603|gb|EFS17360.1| polyribonucleotide nucleotidyltransferase [Staphylococcus caprae
C87]
Length = 699
Score = 148 bits (373), Expect = 7e-34, Method: Composition-based stats.
Identities = 46/243 (18%), Positives = 87/243 (35%), Gaps = 18/243 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56
+R GR+ +++R + + A GS L G T L+ T + ++ +
Sbjct: 318 IRPDGRKVDEIRPLDSEVGLLPRAHGSGLFTRGQTQALSVLTLGALGDYQLIDGLGPEVE 377
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y S G A R+ G RALR ++ +A I I
Sbjct: 378 KRFMHHYNFPNFSVGETGPVRAPGRREIGHGALG----ERALRYIIPDTADFPYTIRIVS 433
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V++++G + A+I G+ +AL D ++ + V + + D
Sbjct: 434 EVLESNGSSSQASICGSTLALMDAGVPIKAPVAGIAMGLVTRDD---------SYTILTD 484
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED+ D+D T G I +Q + +++ L A+ ++
Sbjct: 485 IQGMEDALGDMDFKVAGTKEG-ITAIQMDIKIDGLTREVIEEALEQARQGRLAIMDHMLQ 543
Query: 237 VIS 239
I
Sbjct: 544 TIG 546
Score = 110 bits (275), Expect = 2e-22, Method: Composition-based stats.
Identities = 42/231 (18%), Positives = 85/231 (36%), Gaps = 26/231 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKV---PMWIRNTKHGWITAEYGMLP 67
R +++ ++K A G+ LV++GDT +L+TAT ++ + + G +P
Sbjct: 15 RSLTIETGQLAKQANGAVLVRYGDTVVLSTATASKEPRDGDFFPLTVNYEEKMYAAGKIP 74
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R GR G + R+I R +R + QI+ +D
Sbjct: 75 GGFKKR------EGRPGDEATLTARLIDRPIRPLFPKGYRHDVQIMNIVLSADSDCSPEM 128
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
AA+ G+ +A +G +A ++ G + G +++ E +
Sbjct: 129 AAMIGSSMA-------------LSVSDIPFQGPIAGVNVGYVDGNYVINPSVAEKEVSRL 175
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
D + V+ A ++ + + I L+ Q+++I
Sbjct: 176 DLEVAGHKD-AVNMVEAGASE--ITESEMLEAIFFGHEEIKRLVAFQQEII 223
>gi|150003997|ref|YP_001298741.1| polynucleotide phosphorylase/polyadenylase [Bacteroides vulgatus
ATCC 8482]
gi|187470937|sp|A6L0A5|PNP_BACV8 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|149932421|gb|ABR39119.1| polyribonucleotide nucleotidyltransferase [Bacteroides vulgatus
ATCC 8482]
Length = 711
Score = 148 bits (373), Expect = 7e-34, Method: Composition-based stats.
Identities = 49/243 (20%), Positives = 87/243 (35%), Gaps = 18/243 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHG 57
RL GR+ ++R I GS + G+T LT+ T L+EK+ + +
Sbjct: 319 RLDGRKTTEIRPIWCEVGYLPGPHGSAIFTRGETQSLTSVTLGTKLDEKIVDDVLDQHRE 378
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P STG + V R+ G RAL+ + + + D
Sbjct: 379 RFLLHYNFPPYSTGEAKAQRGVGRREIGHGHL----AWRALKGQIPAGY--PYTVRVVSD 432
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+++++G + A + +AL D M+ + + + G + D+
Sbjct: 433 IMESNGSSSMATVCAGTLALMDAGVAMKKPVSGIAMGLIKN-------AGEEKYAVLSDI 485
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T G I Q + S + L AK+ ++ +
Sbjct: 486 LGDEDHLGDMDFKVTGTRDG-ITATQMDIKVDGLSFEILEKALLQAKEGREHILNKLTEC 544
Query: 238 ISN 240
I+
Sbjct: 545 IAE 547
Score = 103 bits (256), Expect = 2e-20, Method: Composition-based stats.
Identities = 38/241 (15%), Positives = 73/241 (30%), Gaps = 26/241 (10%)
Query: 3 LSGRQENQMREISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
GR I+L ++K A+GS +++ G+T LL T +
Sbjct: 12 PDGRT------ITLETGKLAKQADGSVMLRMGNTMLLATVCAAKDAVPGTDFMPLQVEYK 65
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
E G+ R++ RALR + + + I
Sbjct: 66 EKYSAFGRFP--GGFTKREGKASDYEILTCRLVDRALRPLFPDNFHAEVYVNIVLFSADG 123
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
L + + G ++ + + G +++ + +
Sbjct: 124 IDMPDA-------------LAGLAASAALAVSDIPFGGPISEVRVARIDGQFVINPTFEQ 170
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
D+D T +I+ V+ E S+ A + A + I K Q + + E
Sbjct: 171 LEKADMDLMVAATYD-NIMMVE--GEMQEVSEQDLLAAMKAAHEAIKVHCKAQME-LMEE 226
Query: 242 V 242
V
Sbjct: 227 V 227
>gi|78185641|ref|YP_378075.1| ribonuclease PH [Synechococcus sp. CC9902]
gi|78169935|gb|ABB27032.1| RNAse PH [Synechococcus sp. CC9902]
Length = 243
Score = 148 bits (373), Expect = 7e-34, Method: Composition-based stats.
Identities = 104/240 (43%), Positives = 146/240 (60%), Gaps = 4/240 (1%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R GR N +R S+T +A S V+ G T +L + L++ VP W R GW++A
Sbjct: 8 RADGRCRNALRPFSVTWDPMGFALSSVTVRTGRTTVLCSVCLDDNVPRWRRGEGLGWLSA 67
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
EY +LP ST R R + GR+QEIQR+IGR+LR+ VD++ LG R ++IDCDVIQA
Sbjct: 68 EYRLLPGSTPQRQGR--ELMKLSGRTQEIQRLIGRSLRAAVDMAQLGERTLLIDCDVIQA 125
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
D GTRTAAITGAW+ALH + L+ VAA+S G++ ++DLDY E
Sbjct: 126 DAGTRTAAITGAWLALHRACSRLVSQGILENS--PLQSQVAAVSVGLVDSQALLDLDYSE 183
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
DS +VD N V D G ++EVQG+AE A FS+ A+L+LA+ + L++ Q+ + +E
Sbjct: 184 DSRAEVDLNVVQADDGRLLEVQGTAEGAPFSRAQLDALLDLAEPGLRQLMEAQRQALVSE 243
>gi|120434746|ref|YP_860433.1| polynucleotide phosphorylase/polyadenylase [Gramella forsetii
KT0803]
gi|187610271|sp|A0LYC0|PNP_GRAFK RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|117576896|emb|CAL65365.1| polyribonucleotide nucleotidyltransferase [Gramella forsetii
KT0803]
Length = 750
Score = 148 bits (373), Expect = 7e-34, Method: Composition-based stats.
Identities = 47/244 (19%), Positives = 85/244 (34%), Gaps = 18/244 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
+RL GR+ +++R+I GS + G+T L T TL + +
Sbjct: 317 IRLDGRKTDEVRDIWCEVDYLPSVHGSSIFTRGETQALATVTLGTSRDANQIDMPSHEGE 376
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P TG S R+ G RAL+ ++ + +
Sbjct: 377 ERFYLHYNFPPFCTGEARPIRGTSRREVGHGNL----AQRALKGMIP--EECPYTVRVVS 430
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V++++G + A + +AL D M+ + + + G + D
Sbjct: 431 EVLESNGSSSMATVCAGTMALMDAGVQMKKPVSGIAMGLISDGDSG-------KYAVLSD 483
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T G I Q + S + L A+D +++ D
Sbjct: 484 ILGDEDHLGDMDFKVTGTADG-ITACQMDIKVKGLSYEILVNALKQARDGRLHILEKLTD 542
Query: 237 VISN 240
I+
Sbjct: 543 TIAQ 546
Score = 99 bits (247), Expect = 3e-19, Method: Composition-based stats.
Identities = 35/232 (15%), Positives = 73/232 (31%), Gaps = 26/232 (11%)
Query: 7 QENQMREISLTRR-VSKYAEGSCLVKFGDTHLLTTATL---EEKVPMWIRNTKHGWITAE 62
REIS+ ++K A GS +V+ G LL T ++ +P + A
Sbjct: 11 DLGDGREISIETGKLAKQAHGSVVVQSGKCMLLCTVVSNYEQKDLPFLPLTVDYREKFAA 70
Query: 63 YGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQAD 122
G P R R R++ R LR + Q
Sbjct: 71 AGRYPGGFFKR------EARPSDGEVLTMRLVDRVLRPLFPKDYSAETQ----------- 113
Query: 123 GGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGED 182
++ + + + + + + ++ G + G I++ +
Sbjct: 114 --VMIQLMSHDDEVMPEAMAGLAASAAIQLSDFPFECAISEARVGRVNGEFIINPTRAQL 171
Query: 183 STIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
+ D++ + ++ V+ E S++ + A + I I+ Q
Sbjct: 172 AESDIEMMI-GASADSVMMVE--GEMDEISEEDMVEAIKFAHEAIKVQIEAQ 220
>gi|298209020|ref|YP_003717199.1| putative polyribonucleotide nucleotidyltransferase [Croceibacter
atlanticus HTCC2559]
gi|83848947|gb|EAP86816.1| putative polyribonucleotide nucleotidyltransferase [Croceibacter
atlanticus HTCC2559]
Length = 741
Score = 148 bits (373), Expect = 7e-34, Method: Composition-based stats.
Identities = 48/244 (19%), Positives = 82/244 (33%), Gaps = 18/244 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
+RL GR+ +R I GS + G+T L T TL + +
Sbjct: 317 LRLDGRKTTDIRPIWCEVDYLPSVHGSSIFTRGETQALATVTLGTSRDANMIDMPSYEGE 376
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P STG S R+ G RAL+ +V + +
Sbjct: 377 ERFYLHYNFPPFSTGEARPIRGTSRREVGHGNL----AQRALKGMVP--EDCPYTVRVVS 430
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V++++G + A + +A+ D M+ + + + + D
Sbjct: 431 EVLESNGSSSMATVCAGTMAMMDAGVQMKKPVSGIAMGLISDAESG-------KYAVLSD 483
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T G I Q + S + L A+D +++ D
Sbjct: 484 ILGDEDHLGDMDFKVTGTADG-ITACQMDIKVKGLSYEILVNALKQARDGRLHILEKLTD 542
Query: 237 VISN 240
IS
Sbjct: 543 TISQ 546
Score = 102 bits (254), Expect = 4e-20, Method: Composition-based stats.
Identities = 35/232 (15%), Positives = 70/232 (30%), Gaps = 26/232 (11%)
Query: 7 QENQMREISLTRR-VSKYAEGSCLVKFGDTHLLTTA---TLEEKVPMWIRNTKHGWITAE 62
REI++ ++K A GS +V+ G LL T + V + A
Sbjct: 11 DLGDGREITIETGKLAKQAHGSVVVQSGKCMLLCTVVSNYKQSDVDFLPLTVDYREKFAA 70
Query: 63 YGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQAD 122
G P R R R++ R LR + Q++I D
Sbjct: 71 AGRYPGGFFKR------EARPSDGEVLTMRLVDRVLRPLFPKDYHAETQVMIQLMSHDDD 124
Query: 123 GGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGED 182
+ + + + ++ G + G +++ +
Sbjct: 125 VMPDA-------------MAGLAASAAIQLSDFPFECAISEARVGRVNGEFVINPTRTQL 171
Query: 183 STIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
+ D+D + ++ V+ E S++ + A + I + Q
Sbjct: 172 AESDIDMMI-GASADSVMMVE--GEMDEISEEEMTEAIKFAHEAIKVQCEAQ 220
>gi|292486841|ref|YP_003529711.1| polyribonucleotide nucleotidyltransferase [Erwinia amylovora
CFBP1430]
gi|292900761|ref|YP_003540130.1| polynucleotide phosphorylase [Erwinia amylovora ATCC 49946]
gi|291200609|emb|CBJ47741.1| polynucleotide phosphorylase [Erwinia amylovora ATCC 49946]
gi|291552258|emb|CBA19295.1| polyribonucleotide nucleotidyltransferase [Erwinia amylovora
CFBP1430]
gi|312170909|emb|CBX79168.1| polyribonucleotide nucleotidyltransferase [Erwinia amylovora ATCC
BAA-2158]
Length = 710
Score = 148 bits (373), Expect = 7e-34, Method: Composition-based stats.
Identities = 44/242 (18%), Positives = 90/242 (37%), Gaps = 18/242 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR+++ +R + + V GS L G+T L TATL + + + +
Sbjct: 315 RIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQNLDELMGERTD 374
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + R+ G + R + +V+ + + +
Sbjct: 375 NFLFHYNFPPYSVGETGMVGSPKRREIGHGRL----AKRGVLAVMPKGEAFPYTVRVVSE 430
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ GA +AL D ++ + V + + +
Sbjct: 431 ITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKDDNNFVVLSD---------I 481
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D + G I +Q + +++ LN AK ++ + +
Sbjct: 482 LGDEDHLGDMDFKVAGSREG-ITALQMDIKIEGITREIMQVALNQAKGARLHILSVMEQA 540
Query: 238 IS 239
IS
Sbjct: 541 IS 542
Score = 80.7 bits (197), Expect = 2e-13, Method: Composition-based stats.
Identities = 37/232 (15%), Positives = 73/232 (31%), Gaps = 27/232 (11%)
Query: 14 ISLTRRV-SKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----HGWITAEYGMLPR 68
++L + ++ A + +V DT + T ++K + T G +P
Sbjct: 16 VTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKSKPGQDFFPLTVNYQERTYAAGRIPG 75
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
S R GR R+I R +R + + Q+I +
Sbjct: 76 SFFRR------EGRPSEGETLTSRLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVNPDIV 129
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+ GA A G + A G L +++ E +D
Sbjct: 130 AMIGASAA-------------LALSGLPFNGPIGAARVGYLNDQYVLNPTSDELKESKLD 176
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
T G ++ V+ AE + ++ + D+ +I +++
Sbjct: 177 LVVAGTQ-GAVLMVESEAELLS--EEQMLGAVVFGHDQQQIVIDNINALVAE 225
>gi|2286200|gb|AAC50039.1| polynucleotide phosphorylase [Pisum sativum]
Length = 897
Score = 148 bits (373), Expect = 7e-34, Method: Composition-based stats.
Identities = 47/242 (19%), Positives = 89/242 (36%), Gaps = 13/242 (5%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEE-----KVPMWIRNTKH 56
R GR ++R I+ + + A GS L G+T L ATL + ++ I +
Sbjct: 444 RSDGRTPKEIRPINSSCSILPRAHGSALFTRGETQALAVATLGDNKMAQRINNLIEVDDY 503
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
+Y P G + A S R+ G R+L +++ I ++
Sbjct: 504 KRFYLQYSFPPSCVGEAGRIGAPSRREIGHGML----AERSLETILPSDNDFPYTIRVES 559
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+ +++G + A++ G +AL D ++ + VL G + D
Sbjct: 560 TITESNGSSSMASVCGGCLALQDAGVPIKCSIAGIAMGLVLDTKEFG---GDGTPLILSD 616
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED++ D+D + G I Q + A + L A+D ++
Sbjct: 617 ITGSEDASGDMDFKVAGNEDG-ITAFQMDIKVAGITLPIMREALLQARDGRKHILGEMMK 675
Query: 237 VI 238
+
Sbjct: 676 SL 677
Score = 86.1 bits (211), Expect = 4e-15, Method: Composition-based stats.
Identities = 37/230 (16%), Positives = 67/230 (29%), Gaps = 19/230 (8%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRST 70
R + + + A GS V G+T + TT L + E T
Sbjct: 96 RHTLVETGHMGRQASGSVTVTDGETIVYTTVCLNDTPSEPSDFFPLSVNYQERFSAAGRT 155
Query: 71 GNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAI 130
G+ I R+I R LR + QI+ AI
Sbjct: 156 S--GGFFKREGKTKDHEVLICRLIDRPLRPTMPKGFYHETQILSWVLSYDGSHAPDALAI 213
Query: 131 TGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDAN 190
T A +A VA + G++ IV+ E ++D
Sbjct: 214 TAAGIA-------------LALSEIPTSKAVAGVRVGLIGDKYIVNPTAEEMENSELDLM 260
Query: 191 FVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
T I+ ++G ++ + + +D + + + ++
Sbjct: 261 LAGT-DSAILMIEGYG--NFLPEEKLLKAVEVGQDAVRAICNEVEALVKK 307
>gi|295427761|ref|ZP_06820393.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus EMRSA16]
gi|295128119|gb|EFG57753.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus EMRSA16]
Length = 638
Score = 148 bits (373), Expect = 7e-34, Method: Composition-based stats.
Identities = 44/244 (18%), Positives = 88/244 (36%), Gaps = 18/244 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56
+R GR+ +++R + + GS L G T L+ T + ++ + +
Sbjct: 258 IRPDGRKPDEIRPLDSEVGILPRTHGSGLFTRGQTQALSVLTLGALGDYQLIDGLGPEEE 317
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y S G A R+ G RAL+ ++ +A I I
Sbjct: 318 KRFMHHYNFPNFSVGETGPVRAPGRREIGHGALG----ERALKYIIPDTADFPYTIRIVS 373
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V++++G + A+I G+ +AL D ++ + V + + D
Sbjct: 374 EVLESNGSSSQASICGSTLALMDAGVPIKAPVAGIAMGLVTRED---------SYTILTD 424
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED+ D+D T G I +Q + +++ L A+ +++
Sbjct: 425 IQGMEDALGDMDFKVAGTKEG-ITAIQMDIKIDGLTREIIEEALEQARRGRLEIMNHMLQ 483
Query: 237 VISN 240
I
Sbjct: 484 TIDQ 487
Score = 66.0 bits (159), Expect = 4e-09, Method: Composition-based stats.
Identities = 29/185 (15%), Positives = 58/185 (31%), Gaps = 22/185 (11%)
Query: 54 TKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQII 113
+ G +P R GR G + R+I R +R + QI+
Sbjct: 1 MNYEEKMYAAGKIPGGFKKR------EGRPGDDATLTARLIDRPIRPLFPKGYKHDVQIM 54
Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP 173
D + AA+ G+ +A +G +A ++ G + G
Sbjct: 55 NMVLSADPDCSPQMAAMIGSSMA-------------LSVSDIPFQGPIAGVNVGYIDGKY 101
Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
I++ E +D + V+ A ++ + + I L+
Sbjct: 102 IINPTVEEKEVSRLDLEVAGHKD-AVNMVEAGASE--ITEQEMLEAIFFGHEEIQRLVDF 158
Query: 234 QKDVI 238
Q+ ++
Sbjct: 159 QQQIV 163
>gi|29840519|ref|NP_829625.1| polynucleotide phosphorylase/polyadenylase [Chlamydophila caviae
GPIC]
gi|75539485|sp|Q822C1|PNP_CHLCV RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|29834868|gb|AAP05503.1| polyribonucleotide nucleotidyltransferase [Chlamydophila caviae
GPIC]
Length = 694
Score = 148 bits (373), Expect = 7e-34, Method: Composition-based stats.
Identities = 45/243 (18%), Positives = 83/243 (34%), Gaps = 18/243 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKH 56
+R GR +R IS+ GSCL G+T + TL + +
Sbjct: 313 VRSDGRAITTIRPISIDTSFLPRTHGSCLFTRGETQTVAVCTLGSEAMAQRYEDLNGEGL 372
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
+Y P S G + + R+ G + +AL + A I I+
Sbjct: 373 AKFYLQYFFPPFSVGEVGRIGSPGRREIGHGKL----AEKALSHTLPDPAKFPYTIRIES 428
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
++ +++G + A++ G +AL D ++ + +L I
Sbjct: 429 NITESNGSSSMASVCGGCLALMDAGVPIKTPIAGIAMGLILDNDHVTILSD--------- 479
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D G I Q + + A L AK ++ + K+
Sbjct: 480 ISGLEDYLGDMDFKVAGNTEG-ITAFQMDIKVEGITPTIMQAALAQAKAGRQHILDIMKE 538
Query: 237 VIS 239
++
Sbjct: 539 ALA 541
Score = 94.9 bits (234), Expect = 1e-17, Method: Composition-based stats.
Identities = 35/240 (14%), Positives = 74/240 (30%), Gaps = 27/240 (11%)
Query: 7 QENQMREISLTRR-VSKYAEGSCLVKFGDTHL---LTTATLEEKVPMWIRNTKHGWITAE 62
+ + + +++ A G+ L + +T + + A LEE V + +
Sbjct: 9 TLEEGKTLVFETGKIARQANGAVLARMQETWVFSSVCAANLEEPVDFLPLRVDYQEKFSS 68
Query: 63 YGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQAD 122
G R GR R R+I R++R + + Q++
Sbjct: 69 IGKTLGGFIKR------EGRPTEREILTSRLIDRSMRPSLPNRLMQDVQVLSYVWSYDGV 122
Query: 123 GGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGED 182
AI G A VA + G + +V+ E
Sbjct: 123 TLPDPIAICGVSAA-------------LAISDIPQISVVAGVRVGFVNNSWVVNPTKAEM 169
Query: 183 STIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNEV 242
++ T++ I+ ++ +++ + IA + + KD + +V
Sbjct: 170 DVSRMELVLAGTEN-AILMIE--GHCDFLTEEQVIEAIEFGHKHIATICRAIKD-LQQKV 225
>gi|87119787|ref|ZP_01075684.1| polyribonucleotide nucleotidyltransferase [Marinomonas sp. MED121]
gi|86165263|gb|EAQ66531.1| polyribonucleotide nucleotidyltransferase [Marinomonas sp. MED121]
Length = 702
Score = 148 bits (373), Expect = 7e-34, Method: Composition-based stats.
Identities = 43/242 (17%), Positives = 89/242 (36%), Gaps = 18/242 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +R I + + GS L G+T + T TL + ++ +
Sbjct: 315 RIDGRDNKTVRPIEVEVGLLSKTHGSSLFTRGETQAIATCTLGTSRDAQMSDGLAGENKD 374
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + V R+ G + R +++V+ I I +
Sbjct: 375 SFMLHYNFPPYSVGECGRMGGVGRREIGHGRL----ARRGVQAVLPSEEEFPYTIRIVSE 430
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ GA +++ D ++ + V + A+ +
Sbjct: 431 ITESNGSSSMASVCGASLSMMDAGVPLKAPVAGIAMGLVKEDDGFAVLTD---------I 481
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T+ G I +Q + +++ L+ A + +++ V
Sbjct: 482 LGDEDHLGDMDFKVAGTEEG-ITALQMDIKIEGINEEIMDIALSQALEARTHILREMSKV 540
Query: 238 IS 239
I
Sbjct: 541 IG 542
Score = 97.6 bits (241), Expect = 1e-18, Method: Composition-based stats.
Identities = 35/229 (15%), Positives = 68/229 (29%), Gaps = 28/229 (12%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVP----MWIRNTKHGWITAEYGMLPR 68
++L V++ A GS L GD +L T + + + + G +P
Sbjct: 15 VTLETGRVARQATGSVLCTIGDVQVLATVVGAKSAQAGQSFFPLSVHYQERAYAVGKIPG 74
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
R GR + R+I R +R + + Q++I D A
Sbjct: 75 GFLKR------EGRPSEKETLTSRLIDRPIRPLFPKGFMNEVQVVITVMSTNTDTDADIA 128
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY-PIVDLDYGEDSTIDV 187
+ A G + A G +++ Y E +
Sbjct: 129 GMLATSAA-------------LSVSGIPFNGPIGAARVGFNDDDGYVLNPSYSELDGSLL 175
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
D T ++ V+ A+ ++D + A + + +
Sbjct: 176 DMVVAGTKD-AVLMVESEAQE--LTEDEMLGAVLFAHKELQAAVSAITE 221
>gi|78211822|ref|YP_380601.1| RNAse PH [Synechococcus sp. CC9605]
gi|123578898|sp|Q3AMY6|RNPH_SYNSC RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|78196281|gb|ABB34046.1| ribonuclease PH [Synechococcus sp. CC9605]
Length = 247
Score = 148 bits (373), Expect = 7e-34, Method: Composition-based stats.
Identities = 101/240 (42%), Positives = 147/240 (61%), Gaps = 4/240 (1%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R GR+ Q+R S+T +A S +V G T +L + LE KVP W + GW++A
Sbjct: 8 RTDGRRPEQLRPFSVTWNPMGFALSSLVVHTGRTAVLCSVCLEGKVPRWRKGEGLGWLSA 67
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
EY +LP ST R R + GR+QEIQR+IGR+LR+V+D+ LG R ++IDCDVIQA
Sbjct: 68 EYRLLPGSTPQRQSR--ELMKLSGRTQEIQRLIGRSLRAVIDMERLGERTLLIDCDVIQA 125
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
D GTRTA+ITGAW+AL + + + Q V + VAA+S G++ G ++DLDY E
Sbjct: 126 DAGTRTASITGAWLALDQACRSLVEQGVLEQSPLVDQ--VAAVSVGLVDGQALLDLDYSE 183
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
DS +VD N V G ++E+QG+AE A FS+ +L+LA+ ++ L++ Q+ +
Sbjct: 184 DSRAEVDLNVVQAGDGRLLEIQGTAEGAPFSRSQLNELLDLAEPGLSSLMQAQRQAFTEH 243
>gi|115372776|ref|ZP_01460082.1| polyribonucleotide nucleotidyltransferase [Stigmatella aurantiaca
DW4/3-1]
gi|310823414|ref|YP_003955772.1| polyribonucleotide nucleotidyltransferase [Stigmatella aurantiaca
DW4/3-1]
gi|115370257|gb|EAU69186.1| polyribonucleotide nucleotidyltransferase [Stigmatella aurantiaca
DW4/3-1]
gi|309396486|gb|ADO73945.1| Polyribonucleotide nucleotidyltransferase [Stigmatella aurantiaca
DW4/3-1]
Length = 807
Score = 148 bits (373), Expect = 7e-34, Method: Composition-based stats.
Identities = 45/243 (18%), Positives = 82/243 (33%), Gaps = 18/243 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ R ++R I+ V GS + G+T L TL +E+ +
Sbjct: 400 RIGARGHAEVRSITCEVGVLPRTHGSAVFTRGETQALVVTTLGTSEDEQRLELLGGMVFK 459
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S R+ G RALR++ S I + D
Sbjct: 460 RFMLHYNFPPFSVNETKPLRGPGRREVGHGAL----AERALRNMAPKSDSFPYTIRVVSD 515
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+++++G + A++ G +AL D ++ + V +G AI +
Sbjct: 516 ILESNGSSSMASVCGGTLALMDAGVPIKAPVAGIAMGLVKEGDKVAILSD---------I 566
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T G I +Q + + + L A+ ++
Sbjct: 567 LGDEDHLGDMDFKVCGTSKG-ITSIQMDIKITGLTTEIMSRALEQARQGRIHILGEMLKT 625
Query: 238 ISN 240
++
Sbjct: 626 MAE 628
Score = 99 bits (247), Expect = 2e-19, Method: Composition-based stats.
Identities = 51/234 (21%), Positives = 87/234 (37%), Gaps = 27/234 (11%)
Query: 13 EISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEK---VPMWIRNTKHGWITAEYGMLPR 68
E+S+ ++K A+G+ +V++GDT LL TA + V ++ G +P
Sbjct: 97 ELSIEVGRLAKQADGAVVVRYGDTMLLVTAVSAREKKDVDFLPLTVEYQEKLYSAGRIPG 156
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
S R GR + R++ R+ R + QII + +
Sbjct: 157 SYFKR------EGRLTEKETLASRLVDRSCRPLFPDGYAYETQIIASVVSAEPENEGDIH 210
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
ITGA AL G +A I G + G + + + D+D
Sbjct: 211 GITGASAALW-------------VSDIPFNGPIAGIRVGRVDGKFVANPTLKQREQSDID 257
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNEV 242
++ IV V+G AE S+ A L K + + +Q + + E+
Sbjct: 258 LVMAVSRE-AIVMVEGGAEE--VSEADMVAALEFGKQAVQPALDIQDE-LRREL 307
>gi|148260661|ref|YP_001234788.1| ribonuclease PH [Acidiphilium cryptum JF-5]
gi|146402342|gb|ABQ30869.1| RNAse PH [Acidiphilium cryptum JF-5]
Length = 243
Score = 148 bits (373), Expect = 7e-34, Method: Composition-based stats.
Identities = 114/230 (49%), Positives = 158/230 (68%), Gaps = 2/230 (0%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R SGR + +R++ + S++AEGS L++ G T +L A++E +VP ++R GW+TA
Sbjct: 6 RPSGRMADALRQVEIVTGFSRHAEGSALIRMGGTEVLCAASVEGRVPGFLRGAGQGWVTA 65
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
EYGMLPR+T R REA G+Q GR+QEIQR+IGR+LR+VVD +ALG I +DCDV+ A
Sbjct: 66 EYGMLPRATHTRGDREAARGKQSGRTQEIQRLIGRSLRAVVDRTALGEMTITLDCDVLNA 125
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
DGGTR AAITGAWVAL ++ + + + + VAA+SCG+ G P++DLDY E
Sbjct: 126 DGGTRCAAITGAWVALALAIRTLRKANVIATDPLIGQ--VAAVSCGVFGGVPVLDLDYAE 183
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231
DS + DANFV+T +G IVE+Q +AERATF + F +L LA+ A+L
Sbjct: 184 DSNAEADANFVLTGTGGIVEIQATAERATFEEATFGTLLGLARKGTAELF 233
>gi|114046602|ref|YP_737152.1| polynucleotide phosphorylase/polyadenylase [Shewanella sp. MR-7]
gi|123131654|sp|Q0HXR0|PNP_SHESR RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|113888044|gb|ABI42095.1| Polyribonucleotide nucleotidyltransferase [Shewanella sp. MR-7]
Length = 699
Score = 148 bits (373), Expect = 7e-34, Method: Composition-based stats.
Identities = 40/240 (16%), Positives = 87/240 (36%), Gaps = 10/240 (4%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R+ GR+ + +R +S+ V GS L G+T L T TL + ++ G T
Sbjct: 314 RIDGREPDMVRALSVLAGVLPRTHGSALFTRGETQALVTCTLGTERDAQKIDSIMGERTN 373
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
+ + V + G R ++ R + +V+ + + + ++ ++
Sbjct: 374 RFMLHYNFPPYSVGETGMVGSPKRREIGHGKLAWRGINAVMPTAEEFPYSVRVVSEITES 433
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
+G + A++ G +AL D ++ + V +G + + E
Sbjct: 434 NGSSSMASVCGTSLALMDAGVPIKTSVAGIAMGLVKEGDNFVVLSD---------ILGDE 484
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
D D+D T G + +Q + +++ L A ++ + I +
Sbjct: 485 DHLGDMDFKVAGTRDG-VTALQMDIKIEGITKEIMEIALQQAYGARVHILNVMDQAIGSH 543
Score = 94.9 bits (234), Expect = 9e-18, Method: Composition-based stats.
Identities = 37/228 (16%), Positives = 74/228 (32%), Gaps = 27/228 (11%)
Query: 14 ISLTRRV-SKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGMLPR 68
++L V ++ A+ + L GDT +L T E + + T G +P
Sbjct: 15 VTLETGVIARQADAAVLASMGDTTVLVTVVGKKEAEAGRDFFPLTVNYQEKTYAAGKIPG 74
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
R GR I R+I R +R + Q+II +
Sbjct: 75 GFFKR------EGRPSEDETLIARLIDRPIRPLFPNGFTNEVQVIITVVSVDPQIEPDII 128
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
++ G A G + A G + G +++ + + ++
Sbjct: 129 SMIGTSAA-------------LAISGIPFSGPLGAARVGYINGEYVLNPTVTQLANSQLN 175
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
T+ G ++ V+ A+ ++ + D+ +IK +
Sbjct: 176 LVVAGTE-GAVLMVESEAQA--LPEEVMLGSVVYGHDQQQVVIKAIAE 220
>gi|149371588|ref|ZP_01891004.1| polynucleotide phosphorylase/polyadenylase [unidentified
eubacterium SCB49]
gi|149355215|gb|EDM43775.1| polynucleotide phosphorylase/polyadenylase [unidentified
eubacterium SCB49]
Length = 739
Score = 148 bits (373), Expect = 7e-34, Method: Composition-based stats.
Identities = 43/243 (17%), Positives = 80/243 (32%), Gaps = 18/243 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
+RL GR+ +++R+I GS + G+T L T TL +
Sbjct: 317 LRLDGRKTDEVRDIWCEIDYLPSVHGSAVFTRGETQALATVTLGTSRDANKIDMPSYEGE 376
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P TG S R+ G QR + + + +
Sbjct: 377 ENFYLHYNFPPFCTGEARPIRGTSRREVGHGNLAQRGLKGMIP------EDCPYTVRVVS 430
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V++++G + A + +A+ D M + + + + D
Sbjct: 431 EVLESNGSSSMATVCAGTMAMMDAGIQMTKPVSGIAMGLISDAETG-------KYAVLTD 483
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T G I Q + S + + L A+D +++
Sbjct: 484 ILGDEDYLGDMDFKVTGTADG-ITACQMDIKVKGLSYEILVSALKQARDGRLHILEKIVA 542
Query: 237 VIS 239
I+
Sbjct: 543 TIA 545
Score = 102 bits (255), Expect = 4e-20, Method: Composition-based stats.
Identities = 37/232 (15%), Positives = 72/232 (31%), Gaps = 26/232 (11%)
Query: 7 QENQMREISLTRR-VSKYAEGSCLVKFGDTHLLTTATL---EEKVPMWIRNTKHGWITAE 62
REI++ ++K A GS +V+ G LL T ++ +P + A
Sbjct: 11 DLGDGREITIETGKLAKQAHGSVVVQSGKCMLLCTVVSNYEQKDLPFLPLTVDYREKFAA 70
Query: 63 YGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQAD 122
G P R R R++ R LR + + Q++I D
Sbjct: 71 AGRYPGGFFKR------EARPSDGEVLTMRLVDRVLRPLFPKNYSAETQVMIQLMSHDDD 124
Query: 123 GGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGED 182
+ + + + ++ G + G I++ +
Sbjct: 125 VMPDA-------------MAGLAASAAIQLSDFPFECAISEARVGRVDGKFIINPTRAQL 171
Query: 183 STIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
D+D + ++ V+ E S++ + A + I I Q
Sbjct: 172 EESDIDMMI-GASADSVMMVE--GEMDEISEEEMIEAIKFAHEAIKVQIDAQ 220
>gi|27467869|ref|NP_764506.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus
epidermidis ATCC 12228]
gi|57866764|ref|YP_188423.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus
epidermidis RP62A]
gi|251810705|ref|ZP_04825178.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus
epidermidis BCM-HMP0060]
gi|282876294|ref|ZP_06285161.1| polyribonucleotide nucleotidyltransferase [Staphylococcus
epidermidis SK135]
gi|293366762|ref|ZP_06613438.1| polyribonucleotide nucleotidyltransferase [Staphylococcus
epidermidis M23864:W2(grey)]
gi|81674891|sp|Q5HPR7|PNP_STAEQ RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|81843823|sp|Q8CST1|PNP_STAES RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|27315414|gb|AAO04548.1|AE016747_45 polyribonucleotide nucleotidyltransferase [Staphylococcus
epidermidis ATCC 12228]
gi|57637422|gb|AAW54210.1| polyribonucleotide nucleotidyltransferase [Staphylococcus
epidermidis RP62A]
gi|251805865|gb|EES58522.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus
epidermidis BCM-HMP0060]
gi|281295319|gb|EFA87846.1| polyribonucleotide nucleotidyltransferase [Staphylococcus
epidermidis SK135]
gi|291319063|gb|EFE59433.1| polyribonucleotide nucleotidyltransferase [Staphylococcus
epidermidis M23864:W2(grey)]
gi|329736337|gb|EGG72609.1| polyribonucleotide nucleotidyltransferase [Staphylococcus
epidermidis VCU028]
gi|329736660|gb|EGG72926.1| polyribonucleotide nucleotidyltransferase [Staphylococcus
epidermidis VCU045]
Length = 701
Score = 148 bits (373), Expect = 7e-34, Method: Composition-based stats.
Identities = 45/244 (18%), Positives = 86/244 (35%), Gaps = 18/244 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56
+R GR+ +++R + + A GS L G T L+ T + ++ +
Sbjct: 318 IRPDGRKVDEIRPLESEVGLLPRAHGSGLFTRGQTQALSVLTLGALGDYQLIDGLGPEVE 377
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y S G A R+ G RALR ++ + I I
Sbjct: 378 KRFMHHYNFPNFSVGETGPVRAPGRREIGHGALG----ERALRYIIPDTQDFPYTIRIVS 433
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V++++G + A+I G+ +AL D ++ + V + + D
Sbjct: 434 EVLESNGSSSQASICGSTLALMDAGVPIKAPVAGIAMGLVTRDD---------SYTILTD 484
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED+ D+D T G I +Q + +++ L A+ ++
Sbjct: 485 IQGMEDALGDMDFKVAGTKDG-ITAIQMDIKIDGLTREVIEEALEQARQGRLAIMDHMLH 543
Query: 237 VISN 240
I
Sbjct: 544 TIEQ 547
Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats.
Identities = 41/231 (17%), Positives = 84/231 (36%), Gaps = 26/231 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKV---PMWIRNTKHGWITAEYGMLP 67
R +++ ++K A G+ LV++GDT +L+TAT ++ + + G +P
Sbjct: 15 RSLTIETGQLAKQANGAVLVRYGDTVVLSTATASKEPRDGDFFPLTVNYEEKMYAAGKIP 74
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R GR G + R+I R +R + QI+ D
Sbjct: 75 GGFKKR------EGRPGDEATLTARLIDRPIRPLFPKGYRHDVQIMNIVLSADPDCSPEM 128
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
AA+ G+ +A +G +A ++ G + G +++ + +
Sbjct: 129 AAMIGSSMA-------------LSVSDIPFQGPIAGVNVGYIDGKYVINPSVADKEISRL 175
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
D + V+ A ++ + + I L+ Q+++I
Sbjct: 176 DLEVAGHKD-AVNMVEAGASE--ITESEMLEAIFFGHEEIKRLVAFQQEII 223
>gi|42782895|ref|NP_980142.1| polynucleotide phosphorylase/polyadenylase [Bacillus cereus ATCC
10987]
gi|81409473|sp|Q732R5|PNP_BACC1 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|42738822|gb|AAS42750.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus ATCC
10987]
Length = 712
Score = 148 bits (373), Expect = 7e-34, Method: Composition-based stats.
Identities = 44/244 (18%), Positives = 85/244 (34%), Gaps = 18/244 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56
+R GR+ +++R ++ + GS L G T L+ T + ++ + +
Sbjct: 315 IRPDGRKGDEIRPLASEVGILSRTHGSGLFTRGQTQALSICTLGALGDVQILDGLGVEES 374
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y S G R+ G RAL V+ + +
Sbjct: 375 KRFMHHYNFPSFSVGETRPMRGPGRREIGHGALG----ERALEPVIPSEKDFPYTVRLVS 430
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V++++G T A+I G+ +A+ D ++ + V G + D
Sbjct: 431 EVLESNGSTSQASICGSTLAMMDAGVPLKAPVAGIAMGLVKSGE---------HYTILTD 481
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T G + +Q + S++ L AK ++
Sbjct: 482 IQGMEDHLGDMDFKVAGTAHG-VTALQMDIKIDGLSREILEEALQQAKVGRMHILDHMLS 540
Query: 237 VISN 240
VI+
Sbjct: 541 VIAE 544
Score = 114 bits (284), Expect = 1e-23, Method: Composition-based stats.
Identities = 43/231 (18%), Positives = 90/231 (38%), Gaps = 26/231 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEK---VPMWIRNTKHGWITAEYGMLP 67
R++++ ++K A G+ LV++GDT +L+TAT ++ V + + G +P
Sbjct: 15 RQLTVETGQLAKQANGAVLVRYGDTAVLSTATASKEAKNVDFFPLTVNYEERLYAVGKIP 74
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R GR ++ R+I R +R + Q++ + D +
Sbjct: 75 GGFIKR------EGRPSEKAILASRLIDRPIRPLFADGFRNEVQVVSIVMSVDQDCSSEM 128
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
AA+ G+ +A +G +A + G + G +++ + D+
Sbjct: 129 AAMLGSSLA-------------LSISDIPFEGPIAGATVGRINGEFVINPTVEQQEQSDI 175
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
T I V+ A++ ++ + D I LI Q++++
Sbjct: 176 HLVVAGTKD-AINMVEAGADQVP--EETMLEAIMFGHDEIKRLIAFQEEIV 223
>gi|329724343|gb|EGG60855.1| polyribonucleotide nucleotidyltransferase [Staphylococcus
epidermidis VCU144]
Length = 701
Score = 148 bits (373), Expect = 7e-34, Method: Composition-based stats.
Identities = 45/244 (18%), Positives = 86/244 (35%), Gaps = 18/244 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56
+R GR+ +++R + + A GS L G T L+ T + ++ +
Sbjct: 318 IRPDGRKVDEIRPLESEVGLLPRAHGSGLFTRGQTQALSVLTLGALGDYQLIDGLGPEVE 377
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y S G A R+ G RALR ++ + I I
Sbjct: 378 KRFMHHYNFPNFSVGETGPVRAPGRREIGHGALG----ERALRYIIPDTQDFPYTIRIVS 433
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V++++G + A+I G+ +AL D ++ + V + + D
Sbjct: 434 EVLESNGSSSQASICGSTLALMDAGVPIKAPVAGIAMGLVTRDD---------SYTILTD 484
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED+ D+D T G I +Q + +++ L A+ ++
Sbjct: 485 IQGMEDALGDMDFKVAGTKDG-ITAIQMDIKIDGLTREVIEEALEQARQGRLAIMDHMLH 543
Query: 237 VISN 240
I
Sbjct: 544 TIEQ 547
Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats.
Identities = 41/231 (17%), Positives = 84/231 (36%), Gaps = 26/231 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKV---PMWIRNTKHGWITAEYGMLP 67
R +++ ++K A G+ LV++GDT +L+TAT ++ + + G +P
Sbjct: 15 RSLTIETGQLAKQANGAVLVRYGDTVVLSTATASKEPRDGDFFPLTVNYEEKMYAAGKIP 74
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R GR G + R+I R +R + QI+ D
Sbjct: 75 GGFKKR------EGRPGDEATLTARLIDRPIRPLFPKGYRHDVQIMNIVLSADPDCSPEM 128
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
AA+ G+ +A +G +A ++ G + G +++ + +
Sbjct: 129 AAMIGSSMA-------------LSVSDIPFQGPIAGVNVGYIDGKYVINPSVADKEISRL 175
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
D + V+ A ++ + + I L+ Q+++I
Sbjct: 176 DLEVAGHKD-AVNMVEAGASE--ITESEMLEAIFFGHEEIKRLVAFQQEII 223
>gi|311068192|ref|YP_003973115.1| polynucleotide phosphorylase/polyadenylase [Bacillus atrophaeus
1942]
gi|310868709|gb|ADP32184.1| polynucleotide phosphorylase/polyadenylase [Bacillus atrophaeus
1942]
Length = 705
Score = 148 bits (372), Expect = 7e-34, Method: Composition-based stats.
Identities = 44/244 (18%), Positives = 84/244 (34%), Gaps = 18/244 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56
+R GR +Q+R +S + GS L G T L+ T + ++ + +
Sbjct: 315 VRPDGRGVDQIRPLSSEVGILSRTHGSGLFTRGQTQALSICTLGALGDVQILDGLGVEES 374
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y S G R+ G RAL V+ I +
Sbjct: 375 KRFMHHYNFPQFSVGETGPMRGPGRREIGHGALG----ERALEPVIPSEKDFPYTIRLVS 430
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V++++G T A+I + +A+ D ++ + V G + D
Sbjct: 431 EVLESNGSTSQASICASTLAMMDAGVPIKAPVAGIAMGLVKSGE---------YYTVLTD 481
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED+ D+D T G + +Q + S++ L AK +++ +
Sbjct: 482 IQGMEDALGDMDFKVAGTAKG-VTALQMDIKIDGLSREILEEALQQAKKGRMEILSSMLN 540
Query: 237 VISN 240
+
Sbjct: 541 TLGE 544
Score = 115 bits (288), Expect = 5e-24, Method: Composition-based stats.
Identities = 40/232 (17%), Positives = 90/232 (38%), Gaps = 26/232 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKV---PMWIRNTKHGWITAEYGMLP 67
R++++ ++K A G+ ++++GDT +L++AT ++ + + G +P
Sbjct: 15 RKLTVETGQLAKQANGAVMIRYGDTAVLSSATASKEPKPLDFFPLTVNYEERLYAVGKIP 74
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R GR ++ R+I R +R + Q+I + D +
Sbjct: 75 GGFIKR------EGRPSEKAILASRLIDRPIRPLFADGFRNEVQVISIVMSVDQDCSSEM 128
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
AA+ G+ +AL +G +A ++ G + I++ + D+
Sbjct: 129 AAMFGSSLALC-------------VSDIPFEGPIAGVTVGRVDNQFIINPTVDQLEKSDI 175
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
T I V+ A+ ++ + + I LI Q+++++
Sbjct: 176 HLVVAGTKD-AINMVEAGADEVP--EETMLEAIMFGHEEIKRLIAFQEEIVA 224
>gi|310641602|ref|YP_003946360.1| polynucleotide phosphorylase/polyadenylase [Paenibacillus polymyxa
SC2]
gi|309246552|gb|ADO56119.1| Polynucleotide phosphorylase/polyadenylase [Paenibacillus polymyxa
SC2]
Length = 700
Score = 148 bits (372), Expect = 7e-34, Method: Composition-based stats.
Identities = 43/242 (17%), Positives = 84/242 (34%), Gaps = 18/242 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56
+R GR+ +++R I + GS L G T L+ T + ++ I +
Sbjct: 313 VRPDGRKLDEIRPIESDTSILPRTHGSGLFTRGQTQALSVCTLGALGDVQILDGIDLEET 372
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P S G A R+ G RAL V+ I +
Sbjct: 373 KRFMHHYNFPPFSVGEARPLRAPGRREIGHGALG----ERALSKVIPSETEFPYTIRLVS 428
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V++++G T A+I + +A+ D ++ + + G ++
Sbjct: 429 EVLESNGSTSQASICASTLAMMDAGVPIKAPVAGVAMGLIKDGDHVSVLTD--------- 479
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T G + +Q + ++ L A++ ++ +
Sbjct: 480 IQGMEDHLGDMDFKVAGTAEG-VTAIQMDIKIDGIDRNILQDALKQAREGRLFILGKMME 538
Query: 237 VI 238
I
Sbjct: 539 AI 540
Score = 106 bits (265), Expect = 2e-21, Method: Composition-based stats.
Identities = 37/231 (16%), Positives = 81/231 (35%), Gaps = 26/231 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATL---EEKVPMWIRNTKHGWITAEYGMLP 67
R++ L ++K A + V +G+T +L T T + + + + G +P
Sbjct: 12 RKLVLETGRLAKQANAAVKVSYGETVVLCTVTASREPKDLDFFPLTVNYEERLYAVGKIP 71
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R GR ++ R+ R +R + Q++ + D
Sbjct: 72 GGFIKR------EGRPSQKAILSSRLTDRPIRPLFPEGFRNDVQVLNLVMSVDQDCEPEI 125
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
AA+ G A G + ++ G + G +++ D + +T D+
Sbjct: 126 AAMIGTSAA-------------LSISDVPFNGPIGGVAVGRVNGQFVINPDIAQQNTSDL 172
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
T I+ V+ AE ++ + D I +++ + + ++
Sbjct: 173 YLVVAGTKD-AIMMVE--AEGDEIPEEVMLEAIMFGHDEIKNIVAVIEQLV 220
>gi|206978199|ref|ZP_03239080.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus
H3081.97]
gi|217961227|ref|YP_002339795.1| polynucleotide phosphorylase/polyadenylase [Bacillus cereus AH187]
gi|222097252|ref|YP_002531309.1| polynucleotide phosphorylase/polyadenylase [Bacillus cereus Q1]
gi|229140448|ref|ZP_04269003.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus
BDRD-ST26]
gi|229197917|ref|ZP_04324633.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus m1293]
gi|226702618|sp|B7HLE0|PNP_BACC7 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|254782706|sp|B9IV96|PNP_BACCQ RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|206743616|gb|EDZ55042.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus
H3081.97]
gi|217066515|gb|ACJ80765.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus AH187]
gi|221241310|gb|ACM14020.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus Q1]
gi|228585635|gb|EEK43737.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus m1293]
gi|228643009|gb|EEK99285.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus
BDRD-ST26]
gi|324327701|gb|ADY22961.1| polynucleotide phosphorylase/polyadenylase [Bacillus thuringiensis
serovar finitimus YBT-020]
Length = 712
Score = 148 bits (372), Expect = 7e-34, Method: Composition-based stats.
Identities = 44/244 (18%), Positives = 85/244 (34%), Gaps = 18/244 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56
+R GR+ +++R ++ + GS L G T L+ T + ++ + +
Sbjct: 315 IRPDGRKGDEIRPLASEVGILSRTHGSGLFTRGQTQALSICTLGALGDVQILDGLGVEES 374
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y S G R+ G RAL V+ + +
Sbjct: 375 KRFMHHYNFPSFSVGETRPMRGPGRREIGHGALG----ERALEPVIPSEKDFPYTVRLVS 430
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V++++G T A+I G+ +A+ D ++ + V G + D
Sbjct: 431 EVLESNGSTSQASICGSTLAMMDAGVPLKAPVAGIAMGLVKSGE---------HYTILTD 481
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T G + +Q + S++ L AK ++
Sbjct: 482 IQGMEDHLGDMDFKVAGTAHG-VTALQMDIKIDGLSREILEEALQQAKVGRMHILDHMLS 540
Query: 237 VISN 240
VI+
Sbjct: 541 VIAE 544
Score = 113 bits (283), Expect = 2e-23, Method: Composition-based stats.
Identities = 43/231 (18%), Positives = 90/231 (38%), Gaps = 26/231 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEK---VPMWIRNTKHGWITAEYGMLP 67
R++++ ++K A G+ LV++GDT +L+TAT ++ V + + G +P
Sbjct: 15 RQLTVETGQLAKQANGAVLVRYGDTAVLSTATASKEAKNVDFFPLTVNYEERLYAVGKIP 74
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R GR ++ R+I R +R + Q++ + D +
Sbjct: 75 GGFIKR------EGRPSEKAILASRLIDRPIRPLFADGFRNEVQVVSIVMSVDQDCSSEM 128
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
AA+ G+ +A +G +A + G + G +++ + D+
Sbjct: 129 AAMLGSSLA-------------LSISDIPFEGPIAGATVGRINGEFVINPTVEQQEQSDI 175
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
T I V+ A++ ++ + D I LI Q++++
Sbjct: 176 HLVVAGTKD-AINMVEAGADQVP--EETMLEAIMFGHDEIKRLIAFQEEIV 223
>gi|284992338|ref|YP_003410892.1| polyribonucleotide nucleotidyltransferase [Geodermatophilus
obscurus DSM 43160]
gi|284065583|gb|ADB76521.1| polyribonucleotide nucleotidyltransferase [Geodermatophilus
obscurus DSM 43160]
Length = 762
Score = 148 bits (372), Expect = 8e-34, Method: Composition-based stats.
Identities = 44/242 (18%), Positives = 80/242 (33%), Gaps = 14/242 (5%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
+R+ GR +R +S V GS L + G+T +L TL E+ +
Sbjct: 353 VRIDGRGLTDIRPLSAEVEVLPRVHGSALFERGETQILGVTTLNMLRMEQQLDTLSPVNR 412
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P STG + + R+ G RAL V+ I
Sbjct: 413 KRYMHNYNFPPYSTGETGRVGSPKRREIGHGAL----AERALLPVLPDREEFPYAIRQVS 468
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+ + ++G T ++ + +AL + + + V G + D
Sbjct: 469 EALGSNGSTSMGSVCASTLALLNAGVPLRAPVAGIAMGLVSDE-----VDGKTEYVALTD 523
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED+ D+D T + +Q + D L A+ ++ + +
Sbjct: 524 ILGAEDAFGDMDFKVAGTRDF-VTALQLDTKLDGIPSDVLAQALTQARAARLHILDVMNE 582
Query: 237 VI 238
I
Sbjct: 583 AI 584
Score = 97.2 bits (240), Expect = 2e-18, Method: Composition-based stats.
Identities = 46/249 (18%), Positives = 72/249 (28%), Gaps = 39/249 (15%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT----KHGWITAEYGML 66
R I+ ++K A GS +V GDT LL+ T + G +
Sbjct: 36 RTITFETGRLAKQAAGSVVVTMGDTMLLSATTAGRQPKEHFDFFPLTVDVEERMYAAGRI 95
Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
P S R GR + R+I R LR Q++I + D
Sbjct: 96 PGSFFRR------EGRPSEDAILTCRLIDRPLRPTFAKGLRNEVQVVITVLSLDPDHLYD 149
Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
AI GA + G V ++ G + + E
Sbjct: 150 VLAINGASASTQ-------------LSGLPFSGPVGGTRVALVNGQWVGFPTHAELEDAV 196
Query: 187 VDANFVMT----DSGHIVEVQGSAERATF----------SQDHFFAMLNLAKDRIADLIK 232
D I+ V+ A T +++ L AK I L +
Sbjct: 197 FDMVVAGRVLPDGDVAIMMVEAEATEKTIELVAGGATAPTEEVVAQGLEAAKPFIKALCE 256
Query: 233 LQKDVISNE 241
Q ++ +
Sbjct: 257 AQ-SALAEK 264
>gi|304414101|ref|ZP_07395469.1| polynucleotide phosphorylase/polyadenylase [Candidatus Regiella
insecticola LSR1]
gi|304283315|gb|EFL91711.1| polynucleotide phosphorylase/polyadenylase [Candidatus Regiella
insecticola LSR1]
Length = 698
Score = 148 bits (372), Expect = 8e-34, Method: Composition-based stats.
Identities = 45/243 (18%), Positives = 93/243 (38%), Gaps = 18/243 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ R ++ +R + + V GS L G+T L TATL + + + +
Sbjct: 315 RIDDRGKDTIRSLDMRTGVLPRTHGSALFTRGETQALVTATLGTARDAQSLDELIGERTD 374
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + R+ G + RAL +V+ + I +
Sbjct: 375 RFLLHYNFPPYSVGETGMVGSPKRREIGHGRL----AKRALLAVMPSLDDCPYTVRIVSE 430
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ GA +AL D +++ + V +G + +
Sbjct: 431 ITESNGSSSMASVCGASLALMDAGVPIKEHVAGIAMGLVKEGDNFVVLSD---------I 481
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D + +G I +Q + ++ L+ AK ++ ++ + ++
Sbjct: 482 LGDEDHLGDMDFKVAGSRTG-ITALQMDIKIEGITEKIMEKALHQAKSALSHILDIMEEA 540
Query: 238 ISN 240
I
Sbjct: 541 IKK 543
Score = 92.6 bits (228), Expect = 4e-17, Method: Composition-based stats.
Identities = 35/232 (15%), Positives = 78/232 (33%), Gaps = 27/232 (11%)
Query: 14 ISLTRRV-SKYAEGSCLVKFGDTHLLTTATLEEKVPM----WIRNTKHGWITAEYGMLPR 68
+++ + ++ A + +V DT + T +++ + + + G +P
Sbjct: 16 VTIETGMMARQANSAVMVSVDDTAVFVTVVGQKQAKPGQNFFPLTVNYQERSYAAGRIPG 75
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
+ R GR I R+I R +R + L QII I +
Sbjct: 76 NFFRR------EGRPSEGETLISRLIDRPIRPLFPAGFLNEVQIIATVVSINKEVNPDIV 129
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+ GA A G + A G + I++ E +D
Sbjct: 130 AMIGASAA-------------LSLSDIPFNGPIGAARVGFINDQYILNPTTTELVESRLD 176
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
T++ ++ V+ A+ S++ ++ ++ +I +++
Sbjct: 177 LVVAGTNA-AVLMVESEAKM--LSEEQMLGAVSFGHEQQQIVINNINELVEK 225
>gi|117618225|ref|YP_857790.1| polynucleotide phosphorylase/polyadenylase [Aeromonas hydrophila
subsp. hydrophila ATCC 7966]
gi|187470961|sp|A0KND9|PNP_AERHH RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|117559632|gb|ABK36580.1| polyribonucleotide nucleotidyltransferase [Aeromonas hydrophila
subsp. hydrophila ATCC 7966]
Length = 712
Score = 148 bits (372), Expect = 8e-34, Method: Composition-based stats.
Identities = 40/237 (16%), Positives = 86/237 (36%), Gaps = 10/237 (4%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R+ GR +R +S+ V A GS L G+T + ATL + + G
Sbjct: 314 RIDGRDPEMIRALSVATGVLPRAHGSALFTRGETQAMVVATLGTERDAQNIDELTGNRAD 373
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
+ + V + G R R+ R + +V+ + + + ++ ++
Sbjct: 374 RFMLHYNFPPYCVGETGMMGSPKRREIGHGRLAKRGVAAVMPSADEFPYVVRVVSEITES 433
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
+G + A++ G+ +AL D ++ + V + + + E
Sbjct: 434 NGSSSMASVCGSSLALMDAGVPIKASVAGIAMGLVKEEEGFVVLSD---------ILGDE 484
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
D D+D T G + +Q + +++ L A+ ++K+ + I
Sbjct: 485 DHLGDMDFKVAGTTEG-VTALQMDIKIEGITKEIMEIALKQARGARLHILKVMDEAI 540
Score = 95.7 bits (236), Expect = 5e-18, Method: Composition-based stats.
Identities = 37/228 (16%), Positives = 74/228 (32%), Gaps = 27/228 (11%)
Query: 14 ISLTRRV-SKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGMLPR 68
++L V ++ A + +V DT + T + + + T G +P
Sbjct: 15 VTLETGVMARQATAAVMVSMDDTCVFVTVVGKKEADHGRDFFPLTVNYQERTYAAGRIPG 74
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
R GR I R+I R +R + L Q++ +
Sbjct: 75 GFFRR------EGRPSEGETLISRLIDRPIRPLFPEGFLNEVQVVATVMSVNPAVSPDIV 128
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+ GA A G + A G + G +++ E D+D
Sbjct: 129 AMIGASAA-------------LAISGIPFGGPIGAARVGYMNGQYVLNPTTTELPQSDLD 175
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
T + ++ V+ +E A S++ + +++ +I +
Sbjct: 176 LVVAGTAN-AVLMVE--SEAAILSEEVMLGAVVFGHEQMQAVINAINE 220
>gi|113969375|ref|YP_733168.1| polynucleotide phosphorylase/polyadenylase [Shewanella sp. MR-4]
gi|123130662|sp|Q0HLF6|PNP_SHESM RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|113884059|gb|ABI38111.1| Polyribonucleotide nucleotidyltransferase [Shewanella sp. MR-4]
Length = 699
Score = 148 bits (372), Expect = 8e-34, Method: Composition-based stats.
Identities = 40/240 (16%), Positives = 87/240 (36%), Gaps = 10/240 (4%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R+ GR+ + +R +S+ V GS L G+T L T TL + ++ G T
Sbjct: 314 RIDGREPDMVRALSVLAGVLPRTHGSALFTRGETQALVTCTLGTERDAQKIDSIMGERTN 373
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
+ + V + G R ++ R + +V+ + + + ++ ++
Sbjct: 374 RFMLHYNFPPYSVGETGMVGSPKRREIGHGKLAWRGINAVMPSAEEFPYSVRVVSEITES 433
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
+G + A++ G +AL D ++ + V +G + + E
Sbjct: 434 NGSSSMASVCGTSLALMDAGVPIKTSVAGIAMGLVKEGDNFVVLSD---------ILGDE 484
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
D D+D T G + +Q + +++ L A ++ + I +
Sbjct: 485 DHLGDMDFKVAGTRDG-VTALQMDIKIEGITKEIMEIALQQAYGARVHILNVMDQAIGSH 543
Score = 94.9 bits (234), Expect = 9e-18, Method: Composition-based stats.
Identities = 37/228 (16%), Positives = 74/228 (32%), Gaps = 27/228 (11%)
Query: 14 ISLTRRV-SKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGMLPR 68
++L V ++ A+ + L GDT +L T E + + T G +P
Sbjct: 15 VTLETGVIARQADAAVLASMGDTTVLVTVVGKKEAEAGRDFFPLTVNYQEKTYAAGKIPG 74
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
R GR I R+I R +R + Q+II +
Sbjct: 75 GFFKR------EGRPSEDETLIARLIDRPIRPLFPNGFTNEVQVIITVVSVDPQIEPDII 128
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
++ G A G + A G + G +++ + + ++
Sbjct: 129 SMIGTSAA-------------LAISGIPFSGPLGAARVGYINGEYVLNPTVTQLANSQLN 175
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
T+ G ++ V+ A+ ++ + D+ +IK +
Sbjct: 176 LVVAGTE-GAVLMVESEAQA--LPEEVMLGSVVYGHDQQQVVIKAIAE 220
>gi|255319690|ref|ZP_05360898.1| polyribonucleotide nucleotidyltransferase [Acinetobacter
radioresistens SK82]
gi|262380027|ref|ZP_06073182.1| polyribonucleotide nucleotidyltransferase [Acinetobacter
radioresistens SH164]
gi|255303219|gb|EET82428.1| polyribonucleotide nucleotidyltransferase [Acinetobacter
radioresistens SK82]
gi|262298221|gb|EEY86135.1| polyribonucleotide nucleotidyltransferase [Acinetobacter
radioresistens SH164]
Length = 699
Score = 148 bits (372), Expect = 8e-34, Method: Composition-based stats.
Identities = 48/239 (20%), Positives = 89/239 (37%), Gaps = 10/239 (4%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R+ GR +R + + V + A GS L G+T L TATL + +T G T
Sbjct: 317 RIDGRDTKTVRALDVQVGVLERAHGSALFTRGETQALVTATLGNTRDALMVDTLSGTKTD 376
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
+ + V R R+ R +++V+ + + D+ ++
Sbjct: 377 NFMLHYNFPAYSVGETGRESGPKRREIGHGRLARRGVQAVLPPVDRFPYVLRVVSDITES 436
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
+G + A++ GA +AL D ++ + V +G A+ + E
Sbjct: 437 NGSSSMASVCGASLALMDAGVPLKAPVAGIAMGLVKEGERFAVLSD---------ILGDE 487
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
D D+D + +G I +Q + +++ LN A ++ VIS
Sbjct: 488 DHLGDMDFKVAGSANG-ITALQMDIKIEGITEEIMEVALNQAFTGRMHILNEMNKVISR 545
Score = 91.8 bits (226), Expect = 8e-17, Method: Composition-based stats.
Identities = 40/228 (17%), Positives = 75/228 (32%), Gaps = 28/228 (12%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTKHGWITAEYGMLPR 68
+ L V++ A S L+ G +L T + + + G +P
Sbjct: 18 VVLETGRVARQAN-SVLITMGGVSVLVAVVAQPTAKAGQDFFPLTVNYQEKQYAAGRIPG 76
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
G R GR I R+I R +R + Q+ A
Sbjct: 77 GYGKR------EGRASEAETLISRLIDRPIRPLFPEGYYNEIQVTATVVSSDKTMDADIA 130
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+ G AL +G +A G++ G I++ ++ + D+D
Sbjct: 131 AMLGTSAALSIAGT-------------PFRGPIAGARVGLINGEYILNPNHEQLKESDLD 177
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
T++ ++ V+ A+ S+D + D + I+ K+
Sbjct: 178 LVVAGTET-AVLMVESEAKE--LSEDQMLGAVLFGHDEMQIAIQAIKE 222
>gi|254428432|ref|ZP_05042139.1| 3' exoribonuclease family, domain 2 [Alcanivorax sp. DG881]
gi|196194601|gb|EDX89560.1| 3' exoribonuclease family, domain 2 [Alcanivorax sp. DG881]
Length = 697
Score = 148 bits (372), Expect = 8e-34, Method: Composition-based stats.
Identities = 42/243 (17%), Positives = 82/243 (33%), Gaps = 17/243 (6%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR + +R I GS L G+T + TATL + + + +
Sbjct: 316 RIDGRALDAVRAIDCQVGTLAKTHGSALFTRGETQAIVTATLGGMRDAQFIDALEGSHQD 375
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
+Y P G + R+ G + R + +VV + + +
Sbjct: 376 HFMLQYNFPPYCVGETGFIGSPKRREIGHGRL----ARRGVEAVVPSVQDFPYTVRVVSE 431
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ G +AL D + + V + + D+
Sbjct: 432 ITESNGSSSMASVCGTSMALMDAGVPLTAPVAGIAMGLVKEED--------GRFAVLSDI 483
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T G + +Q + +++ LN A ++
Sbjct: 484 LGDEDHLGDMDFKVAGTARG-VTALQMDIKIEGITEEIMEKALNQANAGRLHILGEMNKA 542
Query: 238 ISN 240
IS
Sbjct: 543 ISE 545
Score = 102 bits (255), Expect = 3e-20, Method: Composition-based stats.
Identities = 41/237 (17%), Positives = 79/237 (33%), Gaps = 32/237 (13%)
Query: 5 GRQENQMREISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPM----WIRNTKHGWI 59
GR ++L +++ A + +V+ GDT +L T ++ + +
Sbjct: 12 GRDT-----VTLETGQIARQATAAVMVRIGDTEVLVTVVGRKEADPSKNFFPLTVNYQEK 66
Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119
T G +P R GR + R+I R +R + + Q++
Sbjct: 67 TYATGRIPGGFLKR------EGRPSEKETLTCRLIDRPIRPLFPNGFMNEVQVVATVMSS 120
Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179
+ AA+ G A G + A G G I++ Y
Sbjct: 121 DKNRDPDIAALIGTSAA-------------LSISGIPFNGPIGAARVGYKDGMYILNPSY 167
Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
E + +D T+ ++ V+ A+ S+D + + LI+ K+
Sbjct: 168 SELAESALDLVVAGTEP-AVLMVESEAQE--LSEDQMLGAVLFGHMEMQPLIQGIKE 221
>gi|223044246|ref|ZP_03614283.1| polyribonucleotide nucleotidyltransferase [Staphylococcus capitis
SK14]
gi|222442396|gb|EEE48504.1| polyribonucleotide nucleotidyltransferase [Staphylococcus capitis
SK14]
Length = 699
Score = 148 bits (372), Expect = 8e-34, Method: Composition-based stats.
Identities = 46/242 (19%), Positives = 87/242 (35%), Gaps = 18/242 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56
+R GR+ +++R + + A GS L G T L+ T + ++ +
Sbjct: 318 IRPDGRKVDEIRPLDSEVGLLPRAHGSGLFTRGQTQALSVLTLGALGDYQLIDGLGPEVE 377
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y S G A R+ G RALR ++ +A I I
Sbjct: 378 KRFMHHYNFPNFSVGETGPVRAPGRREIGHGALG----ERALRYIIPDTADFPYTIRIVS 433
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V++++G + A+I G+ +AL D ++ + V + + D
Sbjct: 434 EVLESNGSSSQASICGSTLALMDAGVPIKAPVAGIAMGLVTRDD---------SYTILTD 484
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED+ D+D T G I +Q + +++ L A+ ++
Sbjct: 485 IQGMEDALGDMDFKVAGTKEG-ITAIQMDIKIDGLTREVIEEALEQARQGRLAIMDHMLQ 543
Query: 237 VI 238
I
Sbjct: 544 TI 545
Score = 110 bits (275), Expect = 2e-22, Method: Composition-based stats.
Identities = 42/231 (18%), Positives = 84/231 (36%), Gaps = 26/231 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKV---PMWIRNTKHGWITAEYGMLP 67
R +++ ++K A G+ LV++GDT +L+TAT ++ + + G +P
Sbjct: 15 RSLTIETGQLAKQANGAVLVRYGDTVVLSTATASKEPRDGDFFPLTVNYEEKMYAAGKIP 74
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R GR G + R+I R +R + QI+ D
Sbjct: 75 GGFKKR------EGRPGDEATLTARLIDRPIRPLFPKGYRHDVQIMNIVLSADPDCSPEM 128
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
AA+ G+ +A +G +A ++ G + G +++ E +
Sbjct: 129 AAMIGSSMA-------------LSVSDIPFQGPIAGVNVGYVDGNYVINPSVNEKEVSRL 175
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
D + V+ A ++ + + I L+ Q+++I
Sbjct: 176 DLEVAGHKD-AVNMVEAGASE--ITESEMLEAIFFGHEEIKRLVAFQQEII 223
>gi|312865445|ref|ZP_07725672.1| polyribonucleotide nucleotidyltransferase [Streptococcus downei
F0415]
gi|311098963|gb|EFQ57180.1| polyribonucleotide nucleotidyltransferase [Streptococcus downei
F0415]
Length = 825
Score = 148 bits (372), Expect = 8e-34, Method: Composition-based stats.
Identities = 46/242 (19%), Positives = 82/242 (33%), Gaps = 18/242 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
+R GRQ +++R + GS L G T L+ TL E K+ +
Sbjct: 317 IRPDGRQVDEIRPLEAEVDFLPQVHGSGLFTRGQTQALSVLTLAPMSESKIVDGLDPEYR 376
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y S G + A R+ G RAL V+ I +
Sbjct: 377 KRFMHHYNFPQYSVGETGRYGAPGRREIGHGALG----ERALAQVLPSFEDFPYAIRLVA 432
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V++++G + A+I +AL ++ + + + D
Sbjct: 433 EVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISD---------GSNYTILTD 483
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T G I +Q + + + + L AK +++ L +
Sbjct: 484 IQGLEDHFGDMDFKVAGTRQG-ITALQMDIKISGITPEILKEALAQAKKARYEILDLIEQ 542
Query: 237 VI 238
I
Sbjct: 543 TI 544
Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats.
Identities = 44/231 (19%), Positives = 82/231 (35%), Gaps = 26/231 (11%)
Query: 13 EISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKV---PMWIRNTKHGWITAEYGMLPR 68
+ + V+K A G+ +V +GD+ +L AT+ +K+ + + G P
Sbjct: 14 PLVVEIGQVAKQANGAAVVHYGDSTVLCAATMSKKMARTDFFPLQVNYEEKMYAAGKFPG 73
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
R GR + R+I R +R + Q+I D A
Sbjct: 74 GFMKR------EGRPSADATLTARLIDRPIRPLFAQGFRNEVQVINTVLSYDPDASAPMA 127
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+ + +AL +G +A + L G I++ + ++D
Sbjct: 128 AMFASSLALC-------------ISDIPFEGPIAGVQVAYLDGEFIINPTAQQKEASNLD 174
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
T I V+ A+ S+D L I +LI Q+++++
Sbjct: 175 LTVAGTKD-AINMVESGAQE--LSEDIMLEALLKGHQAIQELIAFQEEIVA 222
>gi|327441005|dbj|BAK17370.1| polyribonucleotide nucleotidyltransferase [Solibacillus silvestris
StLB046]
Length = 704
Score = 148 bits (372), Expect = 8e-34, Method: Composition-based stats.
Identities = 46/243 (18%), Positives = 87/243 (35%), Gaps = 18/243 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56
+R GR+++++R +S + A GS L G T L+ T + ++ + +
Sbjct: 314 VRPDGRKQDEIRPLSSEVDLLPRAHGSALFTRGQTQALSICTLGALGDVQIIDGLGIEES 373
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y S G + + R+ G RA+ +V+ I
Sbjct: 374 KRWMHHYNFPQFSVGETGRYGSPGRREIGHGALG----ERAILAVMPTEEEFPYAIRCVS 429
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V++++G T A+I + +AL ++ + V KG +
Sbjct: 430 EVLESNGSTSQASICASTMALMAAGVPIKAPVAGIAMGLVKKGEHYTVLSD--------- 480
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T G + +Q + S+D L AK +++
Sbjct: 481 IQGMEDHLGDMDFKVAGTAKG-VTALQMDIKIDGLSRDILEEALTQAKIGRMHILEHMMS 539
Query: 237 VIS 239
IS
Sbjct: 540 TIS 542
Score = 116 bits (289), Expect = 3e-24, Method: Composition-based stats.
Identities = 37/233 (15%), Positives = 82/233 (35%), Gaps = 26/233 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKV---PMWIRNTKHGWITAEYGMLP 67
R +++ ++K A G+ ++++G+T +L TAT+ ++ + G +P
Sbjct: 14 RPLTVEVGQLAKQANGAAMIRYGETAVLATATMSKQPKALDFFPLTVNFEERLYAAGKIP 73
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R GR + R+I R +R + Q I+ ++
Sbjct: 74 GGFIKR------EGRPSEAAVLTSRLIDRPIRPMFPDGFRNEVQSILMVMSNDSNCPADV 127
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
AA+ G+ ++ G +A + G + G +V+ + + V
Sbjct: 128 AAMFGSSLS-------------LAISDIPFDGPIAGVHVGYIEGEFVVNPTVEQSAKSTV 174
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
+ V+ A ++D + + I LI Q+ +++
Sbjct: 175 HLTVAGNKD-AVNMVEAGALE--VTEDIMLEAIMFGHEEIKKLIAFQEQIVAE 224
>gi|283850795|ref|ZP_06368081.1| Polyribonucleotide nucleotidyltransferase [Desulfovibrio sp.
FW1012B]
gi|283573718|gb|EFC21692.1| Polyribonucleotide nucleotidyltransferase [Desulfovibrio sp.
FW1012B]
Length = 762
Score = 148 bits (372), Expect = 8e-34, Method: Composition-based stats.
Identities = 48/243 (19%), Positives = 86/243 (35%), Gaps = 18/243 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTKH 56
+RL GR +R I + V GS L G+T L A T +E+ + +
Sbjct: 320 IRLDGRDTKSVRPIGIQVGVLPRTHGSTLFARGETKALCVATLGSTGDEQKIETLNGETY 379
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P G S R G R++ V+ + +
Sbjct: 380 KRFMLHYNFPPYCVGEVKMLRGPSRRDIGHGAL----AERSVLPVLPGPEEFPFTMRVVS 435
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
V++++G + A++ GA +AL D ++ + + +G + D
Sbjct: 436 QVMESNGSSSMASVCGASLALMDAGVPIKQPVAGIAMGLIKEGDD---------FLILTD 486
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED+ D+D T G I +Q + Q LN AK+ ++ +
Sbjct: 487 ILGDEDAMGDMDFKVAGTADG-ITGIQMDIKITGIPQAVMRQALNQAKEARLHILGRMAE 545
Query: 237 VIS 239
V++
Sbjct: 546 VLA 548
Score = 96.1 bits (237), Expect = 4e-18, Method: Composition-based stats.
Identities = 45/227 (19%), Positives = 75/227 (33%), Gaps = 24/227 (10%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTAT---LEEKVPMWIRNTKHGWITAEYGMLPRS 69
I L ++ A+G+ ++ G T +L TA L E+ + + ++ G +P S
Sbjct: 19 IILETGRLANQADGAVWIQSGGTVVLVTACTQALAEEKGFFPLVVDYQEMSYAAGRIPGS 78
Query: 70 TGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAA 129
R GR R + R+I R R + QII A
Sbjct: 79 YFRR-----EIGRPSEREVLVCRLIDRPCRPLFPKGFRDEVQIIATVLSADGQVEPDVLA 133
Query: 130 ITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDA 189
+T A ALH G +A G + G +++ + V
Sbjct: 134 LTAASTALH-------------ISKIPFHGPIAGGRVGYIDGQFVLNPTVPMINAGAVLN 180
Query: 190 NFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+V V+G S+D L + L+ LQ++
Sbjct: 181 LTFAASRDAVVMVEGGGR--FVSEDLLADALEWGHKAVQPLLDLQEE 225
>gi|117919484|ref|YP_868676.1| polynucleotide phosphorylase/polyadenylase [Shewanella sp. ANA-3]
gi|187611298|sp|A0KU01|PNP_SHESA RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|117611816|gb|ABK47270.1| 3' exoribonuclease [Shewanella sp. ANA-3]
Length = 699
Score = 148 bits (372), Expect = 8e-34, Method: Composition-based stats.
Identities = 40/240 (16%), Positives = 87/240 (36%), Gaps = 10/240 (4%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R+ GR+ + +R +S+ V GS L G+T L T TL + ++ G T
Sbjct: 314 RIDGREPDMVRALSVLAGVLPRTHGSALFTRGETQALVTCTLGTERDAQKIDSIMGERTN 373
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
+ + V + G R ++ R + +V+ + + + ++ ++
Sbjct: 374 RFMLHYNFPPYSVGETGMVGSPKRREIGHGKLAWRGINAVMPTAEEFPYSVRVVSEITES 433
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
+G + A++ G +AL D ++ + V +G + + E
Sbjct: 434 NGSSSMASVCGTSLALMDAGVPIKTSVAGIAMGLVKEGDNFVVLSD---------ILGDE 484
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
D D+D T G + +Q + +++ L A ++ + I +
Sbjct: 485 DHLGDMDFKVAGTRDG-VTALQMDIKIEGITKEIMEIALQQAYGARVHILNVMDQAIGSH 543
Score = 93.0 bits (229), Expect = 3e-17, Method: Composition-based stats.
Identities = 37/228 (16%), Positives = 74/228 (32%), Gaps = 27/228 (11%)
Query: 14 ISLTRRV-SKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGMLPR 68
++L V ++ A+ + L GDT +L T E + + T G +P
Sbjct: 15 VTLETGVIARQADAAVLASMGDTTVLVTVVGKKEAEAGRDFFPLTVNYQEKTYAAGKIPG 74
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
R GR I R+I R +R + Q+II +
Sbjct: 75 GFFKR------EGRPSEDETLIARLIDRPIRPLFPNGFTNEVQVIITVVSVDPQIEPDII 128
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
++ G A G + A G + G +++ + + ++
Sbjct: 129 SMIGTSAA-------------LAISGIPFSGPLGAARVGYINGEYVLNPTVTQLESSQLN 175
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
T+S ++ V+ A+ ++ + D+ +IK +
Sbjct: 176 LVVAGTES-AVLMVESEAQA--LPEEVMLGSVVYGHDQQQVVIKAIAE 220
>gi|221134255|ref|ZP_03560560.1| polynucleotide phosphorylase/polyadenylase [Glaciecola sp.
HTCC2999]
Length = 702
Score = 148 bits (372), Expect = 8e-34, Method: Composition-based stats.
Identities = 41/240 (17%), Positives = 84/240 (35%), Gaps = 10/240 (4%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R+ GR +R + + V GS + G+T L ATL + + + G T+
Sbjct: 314 RIDGRDPAMIRALDVATGVLPRTHGSSVFTRGETQALVAATLGTERDAQMIDELGGTSTS 373
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
+ + V G R R+ R +++V+ + + ++ ++
Sbjct: 374 RFMLHYNFPPYCVGETGFIGSPKRREIGHGRLAKRGIQAVMPSETDFPYVVRVVSEITES 433
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
+G + A++ G +AL D ++ + V + + E
Sbjct: 434 NGSSSMASVCGTSLALMDAGVPIKASVAGIAMGLVKSDENFVVLSD---------ILGDE 484
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
D D+D T +G I +Q + +Q+ L AK+ ++ + I
Sbjct: 485 DHLGDMDFKVAGTTNG-ITALQMDIKIEGITQEIMQIALKQAKEARLHILGVMDQAIGGH 543
Score = 88.4 bits (217), Expect = 8e-16, Method: Composition-based stats.
Identities = 35/228 (15%), Positives = 74/228 (32%), Gaps = 27/228 (11%)
Query: 14 ISLTRRV-SKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----HGWITAEYGMLPR 68
++L V ++ A + + DT +L T +++ + G +P
Sbjct: 15 VTLETGVVARQATAAVMASMDDTSVLVTVVGKKEAKADQDFFPLTVNYQEKAYAAGKIPG 74
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
R GR R+I R +R + S QI+I + T
Sbjct: 75 GFFKR------EGRPSEGETLTARLIDRPIRPLFPESFKNEVQIVITVVSANPEIPTDII 128
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
++ G A G + A G G I++ + E + +D
Sbjct: 129 SLIGTSAA-------------LAISGIPFNGPIGAARVGYTNGEYILNTRHSEQAESQLD 175
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
T+S ++ V+ A+ S++ + ++ ++ ++
Sbjct: 176 LVVAGTES-AVLMVESEADI--LSEEVMLGAVVFGHEQSQAVVNNVRE 220
>gi|256830187|ref|YP_003158915.1| polyribonucleotide nucleotidyltransferase [Desulfomicrobium
baculatum DSM 4028]
gi|256579363|gb|ACU90499.1| Polyribonucleotide nucleotidyltransferase [Desulfomicrobium
baculatum DSM 4028]
Length = 736
Score = 148 bits (372), Expect = 8e-34, Method: Composition-based stats.
Identities = 46/243 (18%), Positives = 87/243 (35%), Gaps = 18/243 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
+R+ GR +R + + GS + G+T L T TL +E+ +
Sbjct: 318 IRIDGRDLTTVRPLIMEVGFLPRTHGSAIFTRGETKALCTCTLGSTRDEQRIETLAGDTS 377
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P S G A R+ G RAL V+ I +
Sbjct: 378 RRFLMHYNFPPYSVGEARMLRAPGRREIGHGALS----ERALNPVLPEPDAFPFTIRVVS 433
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
D+++++G + A++ G +AL D ++ + + +G + D
Sbjct: 434 DIMESNGSSSMASVCGGTLALMDAGVPIKTPIAGIAMGLIKEGDE---------YLVLTD 484
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D + G + +Q + A + L+ AKD ++ +
Sbjct: 485 ILGDEDHLGDMDFKVAGSRDG-VTSIQMDIKIAGIPAEVMQKALHQAKDARVHILDQMEA 543
Query: 237 VIS 239
+I+
Sbjct: 544 LIA 546
Score = 92.2 bits (227), Expect = 5e-17, Method: Composition-based stats.
Identities = 47/234 (20%), Positives = 86/234 (36%), Gaps = 26/234 (11%)
Query: 13 EISLTRR-VSKYAEGSCLVKFGDTHLLTTAT---LEEKVPMWIRNTKHGWITAEYGMLPR 68
EI + ++ A G+ V++GDT +L TAT L+ V + + G +P
Sbjct: 17 EIIIEHGKLALQASGAVTVQWGDTVVLVTATHQALDRVVDFLPLTCNYQEMLYSAGRVPG 76
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
+ R GR R++ R +R + Q+I +
Sbjct: 77 NYFRR-----EVGRPSEHETLTSRLMDRPIRPLFPKGCTNEIQVIATVISSDKERSADIL 131
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+ GA ALH G +AAI G G +++ E +T ++
Sbjct: 132 AMLGASTALH-------------ISEIPFAGPIAAIRVGYRDGKFLLNPTATELATSQLN 178
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNEV 242
+ +V V+G A+ S+D + ++ L+ Q++ + E+
Sbjct: 179 MILAGSRD-AVVMVEGGAQ--FLSEDIMTEAVAWGHAQLGPLLDAQEE-LRKEL 228
>gi|169827176|ref|YP_001697334.1| polynucleotide phosphorylase/polyadenylase [Lysinibacillus
sphaericus C3-41]
gi|226702661|sp|B1HR13|PNP_LYSSC RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|168991664|gb|ACA39204.1| Polyribonucleotide nucleotidyltransferase [Lysinibacillus
sphaericus C3-41]
Length = 704
Score = 148 bits (372), Expect = 8e-34, Method: Composition-based stats.
Identities = 43/244 (17%), Positives = 88/244 (36%), Gaps = 18/244 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56
+R GR+ +++R +S + + GS L G T L+ T + ++ + +
Sbjct: 314 IRPDGRKLDEIRPLSSETGLLQRTHGSGLFTRGQTQALSICTLGALGDVQIIDGLGVEES 373
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y S G R+ G RAL +V+ ++ I
Sbjct: 374 KRFMHHYNFPQFSVGETGPIRGPGRREIGHGALG----ERALEAVIPDESVFPYTIRCVS 429
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V++++G T A+I + +A+ D ++ + + KG +I
Sbjct: 430 EVLESNGSTSQASICASTLAMMDAGVPLKAPVAGIAMGLIKKGEHYSILTD--------- 480
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T G + +Q + S++ L AK +++
Sbjct: 481 IQGMEDHLGDMDFKVAGTAKG-VTALQMDIKIDGLSRNILEEALTQAKVGRMHILESMLA 539
Query: 237 VISN 240
++
Sbjct: 540 TLAE 543
Score = 117 bits (292), Expect = 2e-24, Method: Composition-based stats.
Identities = 41/233 (17%), Positives = 85/233 (36%), Gaps = 26/233 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATL---EEKVPMWIRNTKHGWITAEYGMLP 67
R + + ++K A G+ LV++GDT +L+TAT+ + + + + G +P
Sbjct: 14 RPLVIEVGQLAKQANGAVLVRYGDTSVLSTATMSKSPKPLDFFPLTVNYEERLYAAGKIP 73
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R GR ++ R+I R +R + Q+I +D +
Sbjct: 74 GGFIKR------EGRPSEKAILASRLIDRPIRPMFPDGFRNEVQVISMVMSNDSDCTSEM 127
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
AA+ G+ +A G +A + G + G IV+ + + +
Sbjct: 128 AAMVGSSLA-------------LAISDIPFDGPIAGVQVGYIDGEFIVNPTVEQSNQSTI 174
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
+ I V+ A ++ + + I +I Q+ +++
Sbjct: 175 HLSVAGNKD-AINMVEAGALEVP--EEVMLEAIMFGHEEIKKIIAFQEQIVAE 224
>gi|62185343|ref|YP_220128.1| polynucleotide phosphorylase/polyadenylase [Chlamydophila abortus
S26/3]
gi|81312506|sp|Q5L5B4|PNP_CHLAB RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|62148410|emb|CAH64177.1| polyribonucleotide nucleotidyltransferase [Chlamydophila abortus
S26/3]
Length = 694
Score = 148 bits (372), Expect = 8e-34, Method: Composition-based stats.
Identities = 46/243 (18%), Positives = 85/243 (34%), Gaps = 18/243 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKH 56
+R GR +R IS+ GSCL G+T + TL + +
Sbjct: 313 LRSDGRSVTTIRPISIDTSFLPRTHGSCLFTRGETQTMAVCTLGSEAMAQRYEDLNGEGL 372
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
+Y P S G + + R+ G + +AL + I I+
Sbjct: 373 AKFYLQYFFPPFSVGEVGRIGSPGRREIGHGKL----AEKALSHTLPDPMKFPYTIRIES 428
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
++ +++G + A++ G +AL D ++ + +L+ I
Sbjct: 429 NITESNGSSSMASVCGGCLALMDAGVPIKTPIAGIAMGLILEDDHVTILSD--------- 479
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D G I Q + + D A L AK+ D+++ K
Sbjct: 480 ISGLEDHLGDMDFKVAGNTEG-ITAFQMDIKVEGITPDIMRAALAQAKEGRQDILETMKQ 538
Query: 237 VIS 239
++
Sbjct: 539 ALA 541
Score = 93.4 bits (230), Expect = 3e-17, Method: Composition-based stats.
Identities = 36/234 (15%), Positives = 71/234 (30%), Gaps = 26/234 (11%)
Query: 7 QENQMREISLTRR-VSKYAEGSCLVKFGDTHL---LTTATLEEKVPMWIRNTKHGWITAE 62
+ + + +++ A G+ L + +T + + A LEE V + +
Sbjct: 9 TLEEGKTLVFETGKIARQANGAVLARMQETWVFSSVCAANLEEAVDFLPLRVDYQEKFSS 68
Query: 63 YGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQAD 122
G R GR R R+I R++R + + QI+
Sbjct: 69 IGKTLGGFIKR------EGRPTEREILTSRLIDRSMRPSLPNRLMQDIQILSYVWSYDGV 122
Query: 123 GGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGED 182
AI G A VA + G + +V+ E
Sbjct: 123 TLPDPIAICGVSAA-------------LAISDIPQTSIVAGVRVGFVNNRWVVNPTKAEM 169
Query: 183 STIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
++ T++ I+ ++ F+++ + I + K KD
Sbjct: 170 DVSRMELVLAGTEN-AILMIE--GHCDFFTEEQVIEAIEFGHKHIVTICKALKD 220
>gi|310766258|gb|ADP11208.1| polynucleotide phosphorylase/polyadenylase [Erwinia sp. Ejp617]
Length = 710
Score = 148 bits (372), Expect = 8e-34, Method: Composition-based stats.
Identities = 44/242 (18%), Positives = 90/242 (37%), Gaps = 18/242 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR+++ +R + + V GS L G+T L TATL + + + +
Sbjct: 315 RIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQNLDELMGERTD 374
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + R+ G + R + +V+ + + +
Sbjct: 375 NFLFHYNFPPYSVGETGMVGSPKRREIGHGRL----AKRGVLAVMPKGDAFPYTVRVVSE 430
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ GA +AL D ++ + V + + +
Sbjct: 431 ITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKDDNNFVVLSD---------I 481
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D + G I +Q + +++ LN AK ++ + +
Sbjct: 482 LGDEDHLGDMDFKVAGSREG-ITALQMDIKIEGITREIMQVALNQAKGARLHILSVMEQA 540
Query: 238 IS 239
IS
Sbjct: 541 IS 542
Score = 81.0 bits (198), Expect = 1e-13, Method: Composition-based stats.
Identities = 37/232 (15%), Positives = 73/232 (31%), Gaps = 27/232 (11%)
Query: 14 ISLTRRV-SKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----HGWITAEYGMLPR 68
++L + ++ A + +V DT + T ++K + T G +P
Sbjct: 16 VTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKSKPGQDFFPLTVNYQERTYAAGRIPG 75
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
S R GR R+I R +R + + Q+I +
Sbjct: 76 SFFRR------EGRPSEGETLTSRLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVNPDIV 129
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+ GA A G + A G L +++ E +D
Sbjct: 130 AMIGASAA-------------LALSGLPFNGPIGAARVGYLNDQYVLNPTSDELKESKLD 176
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
T G ++ V+ AE + ++ + D+ +I +++
Sbjct: 177 LVVAGTK-GAVLMVESEAELLS--EEQMLGAVVFGHDQQQIVIDNINALVAE 225
>gi|203284701|ref|YP_002222441.1| polyribonucleotide nucleotidyltransferase [Borrelia duttonii Ly]
gi|226702622|sp|B5RMZ9|PNP_BORDL RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|201084144|gb|ACH93735.1| polyribonucleotide nucleotidyltransferase [Borrelia duttonii Ly]
Length = 717
Score = 148 bits (372), Expect = 9e-34, Method: Composition-based stats.
Identities = 46/244 (18%), Positives = 86/244 (35%), Gaps = 19/244 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
+R GR Q+R+I + K GS L G+T L TL +E+V I K
Sbjct: 315 LRTDGRTPTQIRDIIAEVDLLKRTHGSALFTRGETQALAVTTLGTSIDEQVMDDIDGDKR 374
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P S G + R+ G R+L +++ I +
Sbjct: 375 LNFMLHYNFPPFSVGETGRLMTGR-REIGHGHL----AQRSLEAMLPKKDDFPYTIRVVS 429
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V++++G + A + ++L +++ + + I
Sbjct: 430 EVLESNGSSSMATVCSGSMSLMAAGVPVKEQVAGIAMGLISNDDKYVILSD--------- 480
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T +G I Q + + ++ L A+ ++ +
Sbjct: 481 ILGEEDHLGDMDFKVAGTKNG-ITGFQMDIKISNVTKQLMRDALEQARIGRMHILSIMDS 539
Query: 237 VISN 240
VIS+
Sbjct: 540 VISS 543
Score = 102 bits (254), Expect = 4e-20, Method: Composition-based stats.
Identities = 42/239 (17%), Positives = 80/239 (33%), Gaps = 32/239 (13%)
Query: 5 GRQENQMREISLTRRV-SKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----HGWI 59
GR+ ++ L + +K A G+ L +G + +L T + + + +
Sbjct: 10 GRE-----DLILETGLLAKQANGAVLATYGGSTVLATVCCSDSIRENLDFVPLSVEYNEK 64
Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119
G +P R G+ + + R+I R +R + D Q++
Sbjct: 65 YYAAGKIPGGFIKR------EGKPKDKEVLVSRLIDRPMRPLFDKRFGREIQVVPTTLST 118
Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179
+ A+ A+ G +AA+ L IV+ +
Sbjct: 119 DQMNPPDIVGMNAAFTAVF-------------LSDIPFNGPIAAVRIAYLNDEFIVNPSF 165
Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
E +D + G I V+G A S++ ++ A I + LQK+ I
Sbjct: 166 DEIQDSVLDIVVAGSLDG-ITMVEGGANE--VSEEILLDAIDKAYAYIKQICDLQKEFI 221
>gi|167763705|ref|ZP_02435832.1| hypothetical protein BACSTE_02083 [Bacteroides stercoris ATCC
43183]
gi|167697821|gb|EDS14400.1| hypothetical protein BACSTE_02083 [Bacteroides stercoris ATCC
43183]
Length = 716
Score = 148 bits (372), Expect = 9e-34, Method: Composition-based stats.
Identities = 48/243 (19%), Positives = 86/243 (35%), Gaps = 18/243 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHG 57
RL GR+ ++R I GS + G+T L+T T L+EK+ +
Sbjct: 319 RLDGRKTTEIRPIWCEIGYLPGPHGSAIFTRGETQSLSTVTLGTKLDEKIIDDVLEHGKE 378
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P STG + V R+ G RAL+ + + + D
Sbjct: 379 RFLLHYNFPPFSTGEAKAQRGVGRREIGHGHL----AWRALKGQIPADY--PYVVRVVSD 432
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+++++G + A + +AL D ++ + + + G + D+
Sbjct: 433 ILESNGSSSMATVCAGTLALMDAGVKIKKPVSGIAMGLIKN-------AGEEKYAVLSDI 485
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T G I Q + S + L AK+ ++ +
Sbjct: 486 LGDEDHLGDMDFKVTGTKDG-ITATQMDIKVDGLSYEILEKALLQAKEGREYILSKITEC 544
Query: 238 ISN 240
I+
Sbjct: 545 IAE 547
Score = 106 bits (263), Expect = 4e-21, Method: Composition-based stats.
Identities = 41/245 (16%), Positives = 80/245 (32%), Gaps = 34/245 (13%)
Query: 3 LSGRQENQMREISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----HG 57
GR I+L ++K A+GS +++ G+T LL T + +
Sbjct: 12 PDGRT------ITLETGKLAKQADGSVMLRMGNTMLLATVCAAKDAVPGTDFMPLQVEYK 65
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
+ +G P R GR R++ RALR + +
Sbjct: 66 EKFSAFGRFPGGFTKR------EGRASDYEILTCRLVDRALRPLFPDNFHAEVY------ 113
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ V + D L + + G ++ + + G +++
Sbjct: 114 -------VNIILFSADGVDMPDALAGLAASAALAVSDIPFNGPISEVRVARINGEFVINP 166
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
+ + D+D T +I+ V+ E S+ + A + I K Q +
Sbjct: 167 TFEQLEKADMDLMVGATYE-NIMMVE--GEMDEVSERDLLEAMKAAHEAIKIQCKAQME- 222
Query: 238 ISNEV 242
++ EV
Sbjct: 223 LAEEV 227
>gi|146283626|ref|YP_001173779.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas stutzeri
A1501]
gi|187611273|sp|A4VPN6|PNP_PSEU5 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|145571831|gb|ABP80937.1| polyribonucleotide nucleotidyltransferase [Pseudomonas stutzeri
A1501]
Length = 701
Score = 148 bits (372), Expect = 9e-34, Method: Composition-based stats.
Identities = 46/243 (18%), Positives = 91/243 (37%), Gaps = 18/243 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +R +++ V GS L G+T L ATL + ++ + K
Sbjct: 316 RIDGRDTRTVRPLAIEVGVLDKTHGSALFTRGETQALVVATLGTARDAQLLDTLEGEKKD 375
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + A R+ G + R + +++ + I + +
Sbjct: 376 AFMLHYNFPPYSVGECGRMGATGRREIGHGRL----ARRGVAAMLPSADEFPYTIRVVSE 431
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ GA +AL D M+ + V +G A+ +
Sbjct: 432 ITESNGSSSMASVCGASLALMDAGVPMKAPVAGIAMGLVKEGEKFAVLTD---------I 482
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T G + +Q + +++ L A + +++ V
Sbjct: 483 LGDEDHLGDMDFKVAGTAKG-VTALQMDIKIQGITEEIMEIALGQALEARLNILGQMSQV 541
Query: 238 ISN 240
I+
Sbjct: 542 IAQ 544
Score = 97.6 bits (241), Expect = 1e-18, Method: Composition-based stats.
Identities = 35/234 (14%), Positives = 72/234 (30%), Gaps = 29/234 (12%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTH-LLTTATLEEKVPM----WIRNTKHGWITAEYGMLP 67
++L +++ A G+ LV D +L T + + + + T G +P
Sbjct: 15 VTLETGRIARQASGAVLVTVDDDVSVLVTVVGAKTADPSKGFFPLSVHYQEKTYAAGKIP 74
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R R + R+I R +R + Q+I
Sbjct: 75 GGFFKR------EARPSEKETLTSRLIDRPIRPLFPEGFQNEVQVICTVVSTSKKTDPDI 128
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY-PIVDLDYGEDSTID 186
AA+ G A G + A +++ +Y +
Sbjct: 129 AAMIGTSAA-------------LAVSGIPFDGPIGAARVAFHPETGYLLNPNYEQLKASS 175
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
+D T ++ V+ A+ ++D + A D +IK +++ +
Sbjct: 176 LDMVVAGTKD-AVLMVESEAKE--LTEDQMLGAVLFAHDEFQAVIKAVEELAAE 226
>gi|203288233|ref|YP_002223248.1| polyribonucleotide nucleotidyltransferase [Borrelia recurrentis A1]
gi|226702624|sp|B5RQE3|PNP_BORRA RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|201085453|gb|ACH95027.1| polyribonucleotide nucleotidyltransferase [Borrelia recurrentis A1]
Length = 717
Score = 148 bits (372), Expect = 9e-34, Method: Composition-based stats.
Identities = 46/244 (18%), Positives = 86/244 (35%), Gaps = 19/244 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
+R GR Q+R+I + K GS L G+T L TL +E+V I K
Sbjct: 315 LRTDGRTPTQIRDIIAEVDLLKRTHGSALFTRGETQALAVTTLGTSIDEQVMDDIDGDKR 374
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P S G + R+ G R+L +++ I +
Sbjct: 375 LNFMLHYNFPPFSVGETGRLMTGR-REIGHGHL----AQRSLEAMLPKKDDFPYTIRVVS 429
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V++++G + A + ++L +++ + + I
Sbjct: 430 EVLESNGSSSMATVCSGSMSLMAAGVPVKEQVAGIAMGLISNDDKYVILSD--------- 480
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T +G I Q + + ++ L A+ ++ +
Sbjct: 481 ILGEEDHLGDMDFKVAGTKNG-ITGFQMDIKISNVTKQLMRDALEQARIGRMHILSIMDS 539
Query: 237 VISN 240
VIS+
Sbjct: 540 VISS 543
Score = 102 bits (253), Expect = 5e-20, Method: Composition-based stats.
Identities = 42/239 (17%), Positives = 80/239 (33%), Gaps = 32/239 (13%)
Query: 5 GRQENQMREISLTRRV-SKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----HGWI 59
GR+ ++ L + +K A G+ L +G + +L T + + + +
Sbjct: 10 GRE-----DLILETGLLAKQANGAVLATYGGSTVLATVCCSDSIRENLDFVPLSVEYNEK 64
Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119
G +P R G+ + + R+I R +R + D Q++
Sbjct: 65 YYAAGKIPGGFIKR------EGKPKDKEVLVSRLIDRPMRPLFDKRFGREIQVVPTTLST 118
Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179
+ A+ A+ G +AA+ L IV+ +
Sbjct: 119 DQMNPPDIVGMNAAFTAVF-------------LSDIPFNGPIAAVRIAYLNDEFIVNPSF 165
Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
E +D + G I V+G A S++ ++ A I + LQK+ I
Sbjct: 166 DEIQDSVLDIVVAGSLDG-ITMVEGGANE--VSEEILLDAIDKAYTYIKQICDLQKEFI 221
>gi|149182492|ref|ZP_01860966.1| polynucleotide phosphorylase/polyadenylase [Bacillus sp. SG-1]
gi|148849823|gb|EDL63999.1| polynucleotide phosphorylase/polyadenylase [Bacillus sp. SG-1]
Length = 706
Score = 148 bits (372), Expect = 9e-34, Method: Composition-based stats.
Identities = 44/244 (18%), Positives = 82/244 (33%), Gaps = 18/244 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56
+R GR +++R ++ + GS L G T L+ T + +V + +
Sbjct: 315 LRPDGRGLDEIRPLASQVGLLPRTHGSGLFTRGQTQALSICTLGAMGDVQVIDGLGLEES 374
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y S G R+ G RAL ++ I I
Sbjct: 375 KRFMHHYNFPLFSVGETGPIRGPGRREIGHGALG----ERALEPIIPNEKDFPYTIRIVS 430
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V++++G T A+I + +A+ D ++ + + G +I
Sbjct: 431 EVLESNGSTSQASICASTLAMMDAGVPIKAPVAGIAMGLIQSGEHYSILTD--------- 481
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T G + +Q + S++ L AK ++
Sbjct: 482 IQGMEDHLGDMDFKVAGTAKG-VTALQMDIKIEGLSREILEEALQQAKSGRMHILDSMLS 540
Query: 237 VISN 240
IS
Sbjct: 541 TISE 544
Score = 107 bits (267), Expect = 1e-21, Method: Composition-based stats.
Identities = 41/230 (17%), Positives = 90/230 (39%), Gaps = 26/230 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKV---PMWIRNTKHGWITAEYGMLP 67
R++++ ++K A G+ ++++GDT +L+TAT ++ + + G +P
Sbjct: 15 RKLTVEYGQLAKQANGAVMIRYGDTAVLSTATASKQPKPLDFFPLTVNYEERLYAVGKIP 74
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R GR R+ R+I R +R + Q+I + D +
Sbjct: 75 GGFIKR------EGRPSERAVLTSRLIDRPIRPLFADGFRNEVQVISMVMSVDQDCSSEM 128
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
AA+ G+ +A +G +A + G++ G I++ + + ++
Sbjct: 129 AAMFGSSLA-------------LTVSDIPFEGPIAGVQVGLIDGEFIINPNVDQLEKSEI 175
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
+ T I V+ A+ ++ + + I LI Q+++
Sbjct: 176 NLIVAGTKD-AINMVEAGADEVP--EETMLEAIMFGHEEIKRLISFQEEI 222
>gi|160915053|ref|ZP_02077266.1| hypothetical protein EUBDOL_01061 [Eubacterium dolichum DSM 3991]
gi|158432852|gb|EDP11141.1| hypothetical protein EUBDOL_01061 [Eubacterium dolichum DSM 3991]
Length = 735
Score = 148 bits (372), Expect = 9e-34, Method: Composition-based stats.
Identities = 43/244 (17%), Positives = 88/244 (36%), Gaps = 16/244 (6%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
+R GR+ +++R + + GS + G+T +L+ TL + ++ + +
Sbjct: 330 VRPDGRKIDEIRPLDSQVDLLPRVHGSAMFTRGETQVLSVTTLGAMNDNQIIDDVTEVES 389
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P S G + + R+ G RAL V+ I
Sbjct: 390 KRFMHHYNFPPYSVGETGRMGSPGRREIGHGALG----ERALAQVLPSVEEFPYTIRTVA 445
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V++++G + A+I ++L ++ + ++ + + D
Sbjct: 446 EVLESNGSSSQASICAGTMSLMAAGVPIKAPVAGIAMGLIMDESSS-------NYTVLTD 498
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T G I +Q + ++D F L AK +++
Sbjct: 499 IQGMEDHFGDMDFKVAGTSEG-ITALQMDIKVTGITEDIFREALAQAKVARGQILENMLA 557
Query: 237 VISN 240
IS
Sbjct: 558 AISE 561
Score = 108 bits (269), Expect = 7e-22, Method: Composition-based stats.
Identities = 48/244 (19%), Positives = 87/244 (35%), Gaps = 35/244 (14%)
Query: 1 MRLS--GRQENQMREISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK-- 55
RL GR I++ ++K A GS LV++GDT +L+ AT ++ I
Sbjct: 17 FRLDFCGRG------ITVETGEIAKQAGGSVLVRYGDTVVLSAATASKQAKEGIDFFPLT 70
Query: 56 --HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQII 113
G +P R GR + RMI R +R + Q++
Sbjct: 71 VSFEEKLYSVGKIPGGFLRR------EGRPSEHATLTARMIDRPIRPLFADGFRNEVQVV 124
Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP 173
+ D T AA+ GA +AL G +A + G + G
Sbjct: 125 NTVLSVDQDCSTEMAAMFGASLALC-------------VSDIPFNGPIAGVIVGRINGEY 171
Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
+++ + D+ T + V+ A+ +++ + + I L+
Sbjct: 172 VINPTPAQMEESDIHLTVAGTKY-AVNMVEAGAKE--VNEEAMLGAIMFGHEHIKQLVAF 228
Query: 234 QKDV 237
Q+++
Sbjct: 229 QEEI 232
>gi|187611309|sp|Q8EHL1|PNP_SHEON RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
Length = 699
Score = 148 bits (372), Expect = 9e-34, Method: Composition-based stats.
Identities = 40/240 (16%), Positives = 87/240 (36%), Gaps = 10/240 (4%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R+ GR+ + +R +S+ V GS L G+T L T TL + ++ G T
Sbjct: 314 RIDGREPDMVRALSVLAGVLPRTHGSALFTRGETQALVTCTLGTERDAQKIDSIMGERTN 373
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
+ + V + G R ++ R + +V+ + + + ++ ++
Sbjct: 374 RFMLHYNFPPYSVGETGMVGSPKRREIGHGKLAWRGINAVMPSAEEFPYSVRVVSEITES 433
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
+G + A++ G +AL D ++ + V +G + + E
Sbjct: 434 NGSSSMASVCGTSLALMDAGVPIKTSVAGIAMGLVKEGDDFVVLSD---------ILGDE 484
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
D D+D T G + +Q + +++ L A ++ + I +
Sbjct: 485 DHLGDMDFKVAGTRDG-VTALQMDIKIEGITKEIMEIALQQAYGARVHILNVMDQAIGSH 543
Score = 92.2 bits (227), Expect = 5e-17, Method: Composition-based stats.
Identities = 37/228 (16%), Positives = 74/228 (32%), Gaps = 27/228 (11%)
Query: 14 ISLTRRV-SKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGMLPR 68
++L V ++ A+ + L GDT +L T E + + T G +P
Sbjct: 15 VTLETGVIARQADAAVLASMGDTTVLVTVVGKKEAEAGRDFFPLTVNYQEKTYAAGKIPG 74
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
R GR I R+I R +R + Q+II + +
Sbjct: 75 GFFKR------EGRPSEEETLIARLIDRPIRPLFPNGFKNEVQVIITVVSVDPEIEPDII 128
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
++ G A G + A G + G +++ + ++
Sbjct: 129 SMIGTSAA-------------LAISGIPFNGPLGAARVGYINGEYVLNPTVKQIGASQLN 175
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
T+S ++ V+ A+ ++ + D+ +IK +
Sbjct: 176 LVVAGTES-AVLMVESEAQA--LPEEVMLGSVVYGHDQQQVVIKAIAE 220
>gi|282600904|ref|ZP_05980076.2| polyribonucleotide nucleotidyltransferase [Subdoligranulum
variabile DSM 15176]
gi|282570791|gb|EFB76326.1| polyribonucleotide nucleotidyltransferase [Subdoligranulum
variabile DSM 15176]
Length = 759
Score = 148 bits (372), Expect = 9e-34, Method: Composition-based stats.
Identities = 48/244 (19%), Positives = 91/244 (37%), Gaps = 14/244 (5%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR N++R ++ + GS + G T +LT TL + ++ + +T++
Sbjct: 363 RVDGRGINEIRPLAAEVGLLPRVHGSGMFTRGQTQVLTVCTLGSTKDAQLMDDLSDTQYK 422
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + R+ G RAL V+ + I +
Sbjct: 423 RYIHHYNFPPYSVGEARAPRSPGRREIGHGNL----AERALVPVLPDQSEFPYTIRCVSE 478
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
V+ ++G T A+I G+ +AL D ++ + G ++D+
Sbjct: 479 VLSSNGSTSQASICGSTLALMDAGVPIKAPVAGISCGLITDGDPL----HGGRWMTMLDI 534
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI-KLQKD 236
ED D+D T G I +Q + + + L + ++ ++ K
Sbjct: 535 QGVEDFHGDMDFKVGGTRRG-ITAIQMDIKVDGLTYEIVEEALEKCRKGRLYILDEIIKP 593
Query: 237 VISN 240
VI+
Sbjct: 594 VIAE 597
Score = 99.5 bits (246), Expect = 4e-19, Method: Composition-based stats.
Identities = 36/234 (15%), Positives = 77/234 (32%), Gaps = 27/234 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEK----VPMWIRNTKHGWITAEYGML 66
R + + A GS +V++GDT +L T+ EK V + + + G +
Sbjct: 66 RPFVVETGKMCGLANGSAMVRYGDTCVLCNVTMSEKPREGVDFFPLSVEFEEKLYAAGRI 125
Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
P S R GR G + R++ R +R + + + + D
Sbjct: 126 PGSFMRR------EGRPGEHAILSSRVVDRPIRPLFPKDMRNDVCVTMTVMSLDPDNSAE 179
Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
+ GA +A G +A + G++ G +++ + D
Sbjct: 180 ITGMNGASLA-------------IAMSDIPWNGPIAGVFVGLVDGEIVLNPTKEQREHSD 226
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
+ ++ IV ++ A + + I ++ +++
Sbjct: 227 LSLTLAASEE-KIVMIEAGANE--VDEATMMEAIKAGHAEIKKMLAFINSIVAE 277
>gi|242242557|ref|ZP_04797002.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus
epidermidis W23144]
gi|242233984|gb|EES36296.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus
epidermidis W23144]
gi|319401436|gb|EFV89646.1| polyribonucleotide nucleotidyltransferase [Staphylococcus
epidermidis FRI909]
Length = 701
Score = 148 bits (372), Expect = 9e-34, Method: Composition-based stats.
Identities = 45/244 (18%), Positives = 86/244 (35%), Gaps = 18/244 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56
+R GR+ +++R + + A GS L G T L+ T + ++ +
Sbjct: 318 IRPDGRKVDEIRPLESEVGLLPRAHGSGLFTRGQTQALSVLTLGALGDYQLIDGLGPEVE 377
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y S G A R+ G RALR ++ + I I
Sbjct: 378 KRFMHHYNFPNFSVGETGPVRAPGRREIGHGALG----ERALRYIIPDTQDFPYTIRIVS 433
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V++++G + A+I G+ +AL D ++ + V + + D
Sbjct: 434 EVLESNGSSSQASICGSTLALMDAGVPIKAPVAGIAMGLVTRDD---------SYTILTD 484
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED+ D+D T G I +Q + +++ L A+ ++
Sbjct: 485 IQGMEDALGDMDFKVAGTKDG-ITAIQMDIKIDGLTREVIEEALEQARQGRLAIMDHMLH 543
Query: 237 VISN 240
I
Sbjct: 544 TIEQ 547
Score = 110 bits (275), Expect = 2e-22, Method: Composition-based stats.
Identities = 41/231 (17%), Positives = 84/231 (36%), Gaps = 26/231 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKV---PMWIRNTKHGWITAEYGMLP 67
R +++ ++K A G+ LV++GDT +L+TAT ++ + + G +P
Sbjct: 15 RSLTIETGQLAKQANGAVLVRYGDTVVLSTATASKEPRDGDFFPLTVNYEEKMYAAGKIP 74
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R GR G + R+I R +R + QI+ D
Sbjct: 75 GGFKKR------EGRPGDEATLTARLIDRPIRPLFPKGYRHDVQIMNIVLSADPDCSPEM 128
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
AA+ G+ +A +G +A ++ G + G +++ + +
Sbjct: 129 AAMIGSSMA-------------LSVSDIPFQGPIAGVNVGYIDGKYVINPSVADKEISRL 175
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
D + V+ A ++ + + I L+ Q+++I
Sbjct: 176 DLEVAGHKD-AVNMVEAGASE--ITESEMLEAIFFGHEEIKRLVAFQQEII 223
>gi|317476402|ref|ZP_07935651.1| polyribonucleotide nucleotidyltransferase [Bacteroides eggerthii
1_2_48FAA]
gi|316907428|gb|EFV29133.1| polyribonucleotide nucleotidyltransferase [Bacteroides eggerthii
1_2_48FAA]
Length = 716
Score = 148 bits (372), Expect = 9e-34, Method: Composition-based stats.
Identities = 48/243 (19%), Positives = 86/243 (35%), Gaps = 18/243 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHG 57
RL GR+ ++R I GS + G+T L+T T L+EK+ +
Sbjct: 319 RLDGRKTTEIRPIWCEIGYLPGPHGSAIFTRGETQSLSTVTLGTKLDEKIIDDVLEHGKE 378
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P STG + V R+ G RAL+ + + + D
Sbjct: 379 RFLLHYNFPPFSTGEAKAQRGVGRREIGHGHL----AWRALKGQIPADY--PYVVRVVSD 432
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+++++G + A + +AL D ++ + + + G + D+
Sbjct: 433 ILESNGSSSMATVCAGTLALMDAGVKIKKPVSGIAMGLIKN-------TGEEKYAVLSDI 485
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T G I Q + S + L AK+ ++ +
Sbjct: 486 LGDEDHLGDMDFKVTGTKDG-ITATQMDIKVDGLSYEILEKALLQAKEGREYILSKITEC 544
Query: 238 ISN 240
I+
Sbjct: 545 IAE 547
Score = 106 bits (265), Expect = 2e-21, Method: Composition-based stats.
Identities = 41/245 (16%), Positives = 80/245 (32%), Gaps = 34/245 (13%)
Query: 3 LSGRQENQMREISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----HG 57
GR I+L ++K A+GS +++ G+T LL T + +
Sbjct: 12 PDGRT------ITLETGKLAKQADGSVMLRMGNTMLLATVCAAKDAVPGTDFMPLQVEYK 65
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
+ +G P R GR R++ RALR + +
Sbjct: 66 EKFSAFGRFPGGFTKR------EGRASDYEILTCRLVDRALRPLFPDNFHAEVY------ 113
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ V + D L + + G ++ + + G +++
Sbjct: 114 -------VNIILFSADGVDMPDALAGLAASAALAVSDIPFNGPISEVRVARINGEFVINP 166
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
+ + D+D T +I+ V+ E S+ + A + I K Q +
Sbjct: 167 TFDQLEKADMDLMVGATYE-NIMMVE--GEMNEVSEKDLLEAMKAAHEAIKIQCKAQME- 222
Query: 238 ISNEV 242
++ EV
Sbjct: 223 LAEEV 227
>gi|24372791|ref|NP_716833.1| polynucleotide phosphorylase/polyadenylase [Shewanella oneidensis
MR-1]
gi|24346879|gb|AAN54278.1|AE015565_1 polyribonucleotide nucleotidyltransferase [Shewanella oneidensis
MR-1]
Length = 702
Score = 148 bits (372), Expect = 9e-34, Method: Composition-based stats.
Identities = 40/240 (16%), Positives = 87/240 (36%), Gaps = 10/240 (4%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R+ GR+ + +R +S+ V GS L G+T L T TL + ++ G T
Sbjct: 317 RIDGREPDMVRALSVLAGVLPRTHGSALFTRGETQALVTCTLGTERDAQKIDSIMGERTN 376
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
+ + V + G R ++ R + +V+ + + + ++ ++
Sbjct: 377 RFMLHYNFPPYSVGETGMVGSPKRREIGHGKLAWRGINAVMPSAEEFPYSVRVVSEITES 436
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
+G + A++ G +AL D ++ + V +G + + E
Sbjct: 437 NGSSSMASVCGTSLALMDAGVPIKTSVAGIAMGLVKEGDDFVVLSD---------ILGDE 487
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
D D+D T G + +Q + +++ L A ++ + I +
Sbjct: 488 DHLGDMDFKVAGTRDG-VTALQMDIKIEGITKEIMEIALQQAYGARVHILNVMDQAIGSH 546
Score = 92.2 bits (227), Expect = 5e-17, Method: Composition-based stats.
Identities = 37/228 (16%), Positives = 74/228 (32%), Gaps = 27/228 (11%)
Query: 14 ISLTRRV-SKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGMLPR 68
++L V ++ A+ + L GDT +L T E + + T G +P
Sbjct: 18 VTLETGVIARQADAAVLASMGDTTVLVTVVGKKEAEAGRDFFPLTVNYQEKTYAAGKIPG 77
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
R GR I R+I R +R + Q+II + +
Sbjct: 78 GFFKR------EGRPSEEETLIARLIDRPIRPLFPNGFKNEVQVIITVVSVDPEIEPDII 131
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
++ G A G + A G + G +++ + ++
Sbjct: 132 SMIGTSAA-------------LAISGIPFNGPLGAARVGYINGEYVLNPTVKQIGASQLN 178
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
T+S ++ V+ A+ ++ + D+ +IK +
Sbjct: 179 LVVAGTES-AVLMVESEAQA--LPEEVMLGSVVYGHDQQQVVIKAIAE 223
>gi|293556873|ref|ZP_06675434.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
E1039]
gi|291600957|gb|EFF31248.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
E1039]
Length = 736
Score = 148 bits (372), Expect = 9e-34, Method: Composition-based stats.
Identities = 45/243 (18%), Positives = 85/243 (34%), Gaps = 18/243 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56
+R GR+ +++R +S + GS L G T L+ T E ++ +
Sbjct: 346 IRPDGRKLDEIRPLSSEVSLLPRVHGSGLFTRGQTQALSACTLAPLGEHQIIDGLGVEVS 405
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y S G+ + + R+ G RAL V+ I +
Sbjct: 406 KRFIHHYNFPQFSVGSTGRAGSPGRREIGHGALG----ERALAQVIPSEEEFPYTIRLVA 461
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V++++G + A+I +AL D ++ + V G + D
Sbjct: 462 EVLESNGSSSQASICAGTLALMDAGVPIKAPVAGIAMGLVSDGE---------NYTILTD 512
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T G I +Q + ++ L AK ++++
Sbjct: 513 IQGLEDHLGDMDFKVAGTKDG-ITALQMDIKIQGITEQILTEALTQAKQARMEILEELTS 571
Query: 237 VIS 239
I+
Sbjct: 572 TIA 574
Score = 113 bits (282), Expect = 2e-23, Method: Composition-based stats.
Identities = 41/231 (17%), Positives = 84/231 (36%), Gaps = 26/231 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEK---VPMWIRNTKHGWITAEYGMLP 67
R + + ++K A G+ LV++GDT +L+ A ++ + + G +P
Sbjct: 42 RPLQIEVGQLAKQANGAVLVRYGDTVVLSAAVASKEAKDTDFFPLTINYEEKMYAAGKIP 101
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R GR + R+I R +R + Q+ ++ D
Sbjct: 102 GGFIKR------EGRPSTEATLTARLIDRPIRPMFAEGFRNEVQVTNIVMSVETDCSPAV 155
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
AA+ G+ +A G +A + G + G +++ + D+
Sbjct: 156 AAMLGSSLA-------------LSISDIPFDGPIAGVEVGRVNGEYVLNPTVEQAEQTDI 202
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
+ T I V+ A+ S++ L D I +L+ Q++++
Sbjct: 203 ELTVAGTKQ-AINMVESGAKE--VSEEDMLGALLFGFDAIKELVAFQEEIV 250
>gi|227550843|ref|ZP_03980892.1| polynucleotide phosphorylase/polyadenylase [Enterococcus faecium
TX1330]
gi|293379257|ref|ZP_06625403.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
PC4.1]
gi|227179941|gb|EEI60913.1| polynucleotide phosphorylase/polyadenylase [Enterococcus faecium
TX1330]
gi|292642053|gb|EFF60217.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
PC4.1]
Length = 736
Score = 148 bits (372), Expect = 9e-34, Method: Composition-based stats.
Identities = 45/243 (18%), Positives = 85/243 (34%), Gaps = 18/243 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56
+R GR+ +++R +S + GS L G T L+ T E ++ +
Sbjct: 346 IRPDGRKLDEIRPLSSEVSLLPRVHGSGLFTRGQTQALSACTLAPLGEHQIIDGLGVEVS 405
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y S G+ + + R+ G RAL V+ I +
Sbjct: 406 KRFIHHYNFPQFSVGSTGRAGSPGRREIGHGALG----ERALAQVIPSEEEFPYTIRLVA 461
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V++++G + A+I +AL D ++ + V G + D
Sbjct: 462 EVLESNGSSSQASICAGTLALMDAGVPIKAPVAGIAMGLVSDGE---------NYTILTD 512
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T G I +Q + ++ L AK ++++
Sbjct: 513 IQGLEDHLGDMDFKVAGTKDG-ITALQMDIKIQGITEQILTEALTQAKQARMEILEELTS 571
Query: 237 VIS 239
I+
Sbjct: 572 TIA 574
Score = 113 bits (283), Expect = 2e-23, Method: Composition-based stats.
Identities = 41/231 (17%), Positives = 84/231 (36%), Gaps = 26/231 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEK---VPMWIRNTKHGWITAEYGMLP 67
R + + ++K A G+ LV++GDT +L+ A ++ + + G +P
Sbjct: 42 RPLQIEVGQLAKQANGAVLVRYGDTVVLSAAVASKEAKDTDFFPLTINYEEKMYAAGKIP 101
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R GR + R+I R +R + Q+ ++ D
Sbjct: 102 GGFIKR------EGRPSTEATLTARLIDRPIRPMFAEGFRNEVQVTNIVMSVETDCSPAM 155
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
AA+ G+ +A G +A + G + G +++ + D+
Sbjct: 156 AAMLGSSLA-------------LSISDIPFDGPIAGVEVGRVNGEYVLNPTVEQAEQTDI 202
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
+ T I V+ A+ S++ L D I +L+ Q++++
Sbjct: 203 ELTVAGTKQ-AINMVESGAKE--VSEEDMLGALLFGFDAIKELVAFQEEIV 250
>gi|187611315|sp|Q2S1P1|PNP_SALRD RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
Length = 712
Score = 148 bits (372), Expect = 9e-34, Method: Composition-based stats.
Identities = 46/243 (18%), Positives = 86/243 (35%), Gaps = 18/243 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR + +R++ + GS + G+T +L + TL + + +
Sbjct: 322 RIDGRDQTDVRDLWMEVGYLPRVHGSAIFTRGETQVLGSITLGTSDDVQPVDEVFADTDK 381
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G R+ G + RALR V+ I I+ D
Sbjct: 382 SFYLHYRFPPFSVGEASYLRGPKRREIG----HSMLAERALRPVIPEQDEFPYTIRINAD 437
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
V++++G + A++ +AL D +E + V + + +
Sbjct: 438 VMESNGSSSMASVCAGSLALMDAGVPIEKPVAGIAMGLVQEDDETTVLTD---------I 488
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T G I Q + S+D L ++D ++ ++
Sbjct: 489 LGQEDHLGDMDFKLTGTRDG-ITACQMDMKIEGLSRDVMLKALKQSRDARHHILDRMEET 547
Query: 238 ISN 240
I+
Sbjct: 548 IAE 550
Score = 83.4 bits (204), Expect = 2e-14, Method: Composition-based stats.
Identities = 49/233 (21%), Positives = 81/233 (34%), Gaps = 26/233 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKV---PMWIRNTKHGWITAEYGMLP 67
R +SL ++K A+GS + + GDT +L+TATL + V + + A G +P
Sbjct: 16 RSLSLETGRIAKQADGSVVARLGDTMVLSTATLSDSVNESNFFPLTVDYREKFAAGGKVP 75
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R GR + R+I RA+R + ++ D
Sbjct: 76 GGFIKR------EGRPTDKETLTSRLIDRAIRPLFPDGFYHDVHVVNFVISAGQDFDADV 129
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
A G+ AL A + G + G IV+ + D+
Sbjct: 130 IAGVGSSAALMLSGAPFAG-------------PFAEVRVGRVDGDYIVNPTMQQTEESDI 176
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
D +V V+G AE + L++A I L + Q ++
Sbjct: 177 DLVVAG-KEDALVMVEGEAEEISEESM--IEALDVAHRSIRRLCEGQHRLVEQ 226
>gi|325568458|ref|ZP_08144825.1| polyribonucleotide nucleotidyltransferase [Enterococcus
casseliflavus ATCC 12755]
gi|325158227|gb|EGC70380.1| polyribonucleotide nucleotidyltransferase [Enterococcus
casseliflavus ATCC 12755]
Length = 715
Score = 148 bits (372), Expect = 1e-33, Method: Composition-based stats.
Identities = 44/243 (18%), Positives = 86/243 (35%), Gaps = 18/243 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56
+R GRQ +++R ++ + GS L G T L+ T E ++ + +
Sbjct: 328 IRPDGRQLDEIRPLASEVGLLPRVHGSGLFTRGQTQALSACTLAPLGEHQIIDGLGVEES 387
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y S G+ + + R+ G RAL V+ I +
Sbjct: 388 KRFIHHYNFPQFSVGSTGRAGSPGRREIGHGALG----ERALAQVIPDETDFPYTIRLVA 443
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V++++G + A+I +AL D ++ + V G + D
Sbjct: 444 EVLESNGSSSQASICAGTLALMDAGVPIKAPVAGIAMGLVSDGE---------NYTILTD 494
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T G I +Q + ++ L+ AK +++
Sbjct: 495 IQGLEDHLGDMDFKVAGTKDG-ITALQMDIKIQGITEQILTEALSQAKKARMEILNELTS 553
Query: 237 VIS 239
++
Sbjct: 554 TLA 556
Score = 114 bits (286), Expect = 9e-24, Method: Composition-based stats.
Identities = 42/232 (18%), Positives = 85/232 (36%), Gaps = 26/232 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEK---VPMWIRNTKHGWITAEYGMLP 67
R + + ++K A G+ LV++GDT +L+ A ++ + + G +P
Sbjct: 24 RPLEVEVGQLAKQANGAVLVRYGDTVVLSAAVASKEAKDTDFFPLTINYEEKMYAVGKVP 83
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R GR + R+I R +R + Q+ ++ D
Sbjct: 84 GGFIKR------EGRPSTEATLTARLIDRPIRPMFAEGFRNEVQVTNIVMSVEQDCTPAM 137
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
AA+ G+ +A G +A + G + G +++ + D+
Sbjct: 138 AAMLGSSLA-------------LSISDIPFDGPIAGVDVGRVNGEYVLNPTVEQAEQTDI 184
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
+ T I V+ A+ S++ L D I +L+ Q++V++
Sbjct: 185 ELTVAGTKK-AINMVESGAKE--VSEEDMLGALLFGFDAIQELVAFQEEVVA 233
>gi|293573060|ref|ZP_06684001.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
E980]
gi|291606879|gb|EFF36260.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
E980]
Length = 736
Score = 148 bits (372), Expect = 1e-33, Method: Composition-based stats.
Identities = 45/243 (18%), Positives = 85/243 (34%), Gaps = 18/243 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56
+R GR+ +++R +S + GS L G T L+ T E ++ +
Sbjct: 346 IRPDGRKLDEIRPLSSEVSLLPRVHGSGLFTRGQTQALSACTLAPLGEHQIIDGLGVEVS 405
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y S G+ + + R+ G RAL V+ I +
Sbjct: 406 KRFIHHYNFPQFSVGSTGRAGSPGRREIGHGALG----ERALAQVIPSEEEFPYTIRLVA 461
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V++++G + A+I +AL D ++ + V G + D
Sbjct: 462 EVLESNGSSSQASICAGTLALMDAGVPIKAPVAGIAMGLVSDGE---------NYTILTD 512
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T G I +Q + ++ L AK ++++
Sbjct: 513 IQGLEDHLGDMDFKVAGTKDG-ITALQMDIKIQGITEQILTEALTQAKQARMEILEELTS 571
Query: 237 VIS 239
I+
Sbjct: 572 TIA 574
Score = 113 bits (283), Expect = 2e-23, Method: Composition-based stats.
Identities = 41/231 (17%), Positives = 84/231 (36%), Gaps = 26/231 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEK---VPMWIRNTKHGWITAEYGMLP 67
R + + ++K A G+ LV++GDT +L+ A ++ + + G +P
Sbjct: 42 RPLQIEVGQLAKQANGAVLVRYGDTVVLSAAVASKEAKDTDFFPLTINYEEKMYAAGKIP 101
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R GR + R+I R +R + Q+ ++ D
Sbjct: 102 GGFIKR------EGRPSTEATLTARLIDRPIRPMFAEGFRNEVQVTNIVMSVETDCSPAM 155
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
AA+ G+ +A G +A + G + G +++ + D+
Sbjct: 156 AAMLGSSLA-------------LSISDIPFDGPIAGVEVGRVNGEYVLNPTVEQAEQTDI 202
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
+ T I V+ A+ S++ L D I +L+ Q++++
Sbjct: 203 ELTVAGTKQ-AINMVESGAKE--VSEEDMLGALLFGFDAIKELVAFQEEIV 250
>gi|254496145|ref|ZP_05109043.1| polynucleotide phosphorylase/polyadenylase [Legionella drancourtii
LLAP12]
gi|254354632|gb|EET13269.1| polynucleotide phosphorylase/polyadenylase [Legionella drancourtii
LLAP12]
Length = 719
Score = 148 bits (372), Expect = 1e-33, Method: Composition-based stats.
Identities = 42/244 (17%), Positives = 90/244 (36%), Gaps = 18/244 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRN----TKHG 57
R+ GR +R I++ ++ + GSCL G+T + ATL + + +
Sbjct: 314 RIDGRDHKTVRPIAVRTKLLERTHGSCLFTRGETQAIVVATLGNERDAQMLDGINVESKD 373
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + R+ G + RAL +V+ ++ + + +
Sbjct: 374 RFMLHYNFPPYSVGETGMVGSPKRREIGHGRL----AKRALLAVLPEASAFPYVLRVVSE 429
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A + G +AL D ++ + + +G A+ +
Sbjct: 430 ITESNGSSSMATVCGTSLALMDAGVPLKAPVAGVAMGLIKEGDRFAVLTD---------I 480
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T+ G I +Q + + + L A ++ + +
Sbjct: 481 LGDEDHLGDMDFKVAGTEQG-ITALQMDIKITGITSEIMEQALEQALAGRIHILGIMNNA 539
Query: 238 ISNE 241
++
Sbjct: 540 LAEH 543
Score = 105 bits (262), Expect = 5e-21, Method: Composition-based stats.
Identities = 38/228 (16%), Positives = 71/228 (31%), Gaps = 27/228 (11%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGMLPR 68
+ L +++ A+G+ L T +L T E + + G +P
Sbjct: 15 LVLETGEIARQADGAVLASMNGTQVLVTVVGKKEGGEGNDFFPLTVNYQEKFYAVGKIPG 74
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
R GR I R+I R +R + + QII + + +
Sbjct: 75 GFNKR------EGRPSENETLISRLIDRPIRPLFPDNFTNEVQIIATVLSLNPEISSDII 128
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+ GA A G + A G G +++ +D
Sbjct: 129 AMIGASAA-------------LAISGVPFNGPIGAARVGYKDGVYLLNPSRKALEESKLD 175
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
T I+ V+ A+ S+D + + + +IK ++
Sbjct: 176 LVVAGTKD-AILMVESEAKE--LSEDVMRGAIMFGHEMMKSVIKAIEE 220
>gi|329768891|ref|ZP_08260319.1| polyribonucleotide nucleotidyltransferase [Gemella sanguinis M325]
gi|328837254|gb|EGF86891.1| polyribonucleotide nucleotidyltransferase [Gemella sanguinis M325]
Length = 618
Score = 148 bits (372), Expect = 1e-33, Method: Composition-based stats.
Identities = 47/243 (19%), Positives = 81/243 (33%), Gaps = 18/243 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
+R GR ++R ++ V GS L G T L TL +E++ + ++
Sbjct: 318 VRPDGRALTEIRPLASRIDVLPRTHGSALFTRGQTQSLGVVTLGNLSDEQIIDDLTQEEN 377
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y S G A R+ G RAL V+ I I
Sbjct: 378 KRFMLHYNFPAFSVGEVGFSRAPGRREIGHGALG----ERALAQVIPSKEDFPYTIRIVS 433
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
++++++G + A I +AL ++ + V K + D
Sbjct: 434 EILESNGSSSQATICSGSMALMAAGVPIKAQVAGIAMGLVKKDE---------HYTILTD 484
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T G I +Q + S+ L A+ ++ +
Sbjct: 485 IQGMEDHLGDMDFKVAGTTDG-ITALQMDIKIDGLSEQILKESLEQARIGRLQILDHMNE 543
Query: 237 VIS 239
IS
Sbjct: 544 TIS 546
Score = 105 bits (261), Expect = 6e-21, Method: Composition-based stats.
Identities = 43/232 (18%), Positives = 89/232 (38%), Gaps = 26/232 (11%)
Query: 13 EISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEK---VPMWIRNTKHGWITAEYGMLPR 68
E+++ +++ A + +VK+GDT +LTTA ++ V + + G +P
Sbjct: 16 ELTVEIGEMARQANAAVVVKYGDTVVLTTAVASKEAKDVDFFPLTVNYEEKMYAVGKIPG 75
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
R GR G + R+I R +R + + Q+I ++ D A
Sbjct: 76 GFLRR------EGRPGTEATLAARLIDRPIRPLFEDGFRNEVQVISTVLSVEYDCDPVMA 129
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+ + + + KG +A ++ G + G I++ + + ++D
Sbjct: 130 AM-------------LGSSLSLSVSNIPFKGPIAGVTVGYIDGEYIINPNIEQLEKSEID 176
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
T I V+ A+ S++ + + I LI Q+ ++
Sbjct: 177 LKVAGTSD-AINMVEAGAKE--VSEEIMLNAIMFGHEEIKRLIAFQQQIVEE 225
>gi|330859984|emb|CBX70312.1| ribonuclease PH [Yersinia enterocolitica W22703]
Length = 239
Score = 147 bits (371), Expect = 1e-33, Method: Composition-based stats.
Identities = 112/213 (52%), Positives = 147/213 (69%), Gaps = 2/213 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR + R Q+R ++LTR +K+AEGS LV+FGDT +L TAT+EE VP +++ GWIT
Sbjct: 1 MRPADRAAQQVRPLTLTRNYTKHAEGSVLVEFGDTKVLCTATVEEGVPRFLKGQGQGWIT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPRST +R REA G+QGGR+ EIQR+I R+LR+ VDL LG I +DCDV+Q
Sbjct: 61 AEYGMLPRSTHSRNAREAAKGKQGGRTLEIQRLIARSLRAAVDLKKLGEFTITLDCDVLQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+I+GA VAL D L + + +KG VAA+S G++ G + DL+Y
Sbjct: 121 ADGGTRTASISGACVALADALNKLVAS--GKLKANPMKGLVAAVSVGIVKGEALCDLEYV 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQ 213
EDS + D N VM + G ++EVQG+AE FS
Sbjct: 179 EDSAAETDMNVVMMEDGRMIEVQGTAEGEPFSH 211
>gi|328466632|gb|EGF37767.1| ribonuclease PH [Listeria monocytogenes 1816]
Length = 228
Score = 147 bits (371), Expect = 1e-33, Method: Composition-based stats.
Identities = 103/226 (45%), Positives = 143/226 (63%), Gaps = 1/226 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR+ GR+ N +R I +T + EGS L+ G+T ++ +A++E KVP ++R GWI+
Sbjct: 1 MRVDGRESNALRNIEVTPDYLMHPEGSVLIASGNTKVICSASVETKVPPFMRGEGRGWIS 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEY MLPR+T R RE+ G+ GR+ EIQR+IGRALR+VVDL ALG R I +DCDVIQ
Sbjct: 61 AEYSMLPRATNTRNIRESSKGKVTGRTMEIQRLIGRALRAVVDLDALGERTIWLDCDVIQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+ITGA++A+ + +++ F V A + G ++DL+Y
Sbjct: 121 ADGGTRTASITGAFIAMVMAIAKLDEAVP-FAKFPVKDFLAATSVGVLEEGGTVLDLNYV 179
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226
EDS VD N +MT SG VE+QG+ E ATFS+ ++ L K
Sbjct: 180 EDSAAQVDMNIIMTGSGAFVELQGTGEEATFSETELAELIALGKKE 225
>gi|167625054|ref|YP_001675348.1| polynucleotide phosphorylase/polyadenylase [Shewanella halifaxensis
HAW-EB4]
gi|257096707|sp|B0TQ97|PNP_SHEHH RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|167355076|gb|ABZ77689.1| Polyribonucleotide nucleotidyltransferase [Shewanella halifaxensis
HAW-EB4]
Length = 704
Score = 147 bits (371), Expect = 1e-33, Method: Composition-based stats.
Identities = 41/240 (17%), Positives = 87/240 (36%), Gaps = 10/240 (4%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R+ GR+ + +R +++ V GS L G+T L T TL + ++ G T
Sbjct: 317 RIDGREPDMVRALNVMAGVLPRTHGSSLFTRGETQALVTCTLGTERDAQKIDSIMGEYTN 376
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
+ + V + G R ++ R + +V+ + + I ++ ++
Sbjct: 377 RFMLHYNFPPYSVGETGMVGSPKRREIGHGKLAWRGINAVMPTAEEFPYSVRIVSEITES 436
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
+G + A++ G +AL D ++ + V +G + + E
Sbjct: 437 NGSSSMASVCGTSLALMDAGVPIKTSVAGIAMGLVKEGDDFVVLSD---------ILGDE 487
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
D D+D T G I +Q + +++ L A ++ + I +
Sbjct: 488 DHLGDMDFKVAGTRDG-ITALQMDIKIEGITKEIMQIALQQAYGARVHILNVMDQAIGSH 546
Score = 96.8 bits (239), Expect = 2e-18, Method: Composition-based stats.
Identities = 35/228 (15%), Positives = 74/228 (32%), Gaps = 27/228 (11%)
Query: 14 ISLTRRV-SKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGMLPR 68
++L V ++ A+ + L GDT +L T E + + T G +P
Sbjct: 18 VTLETGVIARQADAAVLASMGDTTVLVTVVGKKFEEPGRDFFPLTVNYQEKTYAAGKIPG 77
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
R GR R+I R +R + Q+II + +
Sbjct: 78 GFFKR------EGRPSEGETLTARLIDRPIRPLFPNGFKNEVQVIITVVSVDPEISPEVI 131
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
++ G A G + + G + G I++ + ++
Sbjct: 132 SMIGTSAA-------------LSISGIPFNGPLGSARVGYVNGEYILNPTVSQLVDSQLE 178
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ T ++ V+ +E + ++ + D+ +I+ K+
Sbjct: 179 LSVAGT-DSAVLMVE--SEASALPEEVMLGAVVYGHDQQQVVIQAIKE 223
>gi|226226977|ref|YP_002761083.1| ribonuclease PH [Gemmatimonas aurantiaca T-27]
gi|226090168|dbj|BAH38613.1| ribonuclease PH [Gemmatimonas aurantiaca T-27]
Length = 247
Score = 147 bits (371), Expect = 1e-33, Method: Composition-based stats.
Identities = 107/237 (45%), Positives = 140/237 (59%), Gaps = 4/237 (1%)
Query: 6 RQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGM 65
R +R +SL R YAEGSCL+ FG T +L A++E VP W + + GW+TAEY M
Sbjct: 13 RSNEALRPVSLERGAVLYAEGSCLISFGKTRVLCAASVETGVPGWKKGSGEGWVTAEYAM 72
Query: 66 LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125
LPR+T R + + GGR+QEIQR+IGR++R+++D G I +DCDV+QADGGT
Sbjct: 73 LPRAT--RTRSSRERQQVGGRTQEIQRLIGRSVRAMLDDYRFGEFTIKVDCDVLQADGGT 130
Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185
RTAAITGA VA+ D M +K VAAIS GM+ G +DLDY ED
Sbjct: 131 RTAAITGACVAVQDAFNWMVSTGRIIAS--PVKRRVAAISVGMVDGEVRLDLDYEEDVRA 188
Query: 186 DVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNEV 242
VD N VM+ G VEVQG+ E TFS+ +L A I L++ Q V++ V
Sbjct: 189 GVDMNVVMSSEGRFVEVQGTGEHGTFSRQELDGLLGTAVAGIEQLLEAQTRVLAGPV 245
>gi|308189117|ref|YP_003933248.1| polyribonucleotide nucleotidyltransferase [Pantoea vagans C9-1]
gi|308059627|gb|ADO11799.1| polyribonucleotide nucleotidyltransferase [Pantoea vagans C9-1]
Length = 740
Score = 147 bits (371), Expect = 1e-33, Method: Composition-based stats.
Identities = 44/242 (18%), Positives = 91/242 (37%), Gaps = 18/242 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR+++ +R + + V GS L G+T L TATL + + + +
Sbjct: 344 RIDGREKDMIRGLDVRTGVLPRTHGSSLFTRGETQALVTATLGTTRDAQNLDELMGERTD 403
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + R+ G + R + +V+ + + + +
Sbjct: 404 SFLFHYNFPPYSVGETGMVGSPKRREIGHGRL----AKRGVLAVMPKAEDFPYTVRVVSE 459
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ GA +AL D ++ + V + + +
Sbjct: 460 ITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEDEKFVVLSD---------I 510
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D + G I +Q + +++ LN AK ++ + +
Sbjct: 511 LGDEDHLGDMDFKVAGSREG-ITALQMDIKIEGITREIMQEALNQAKGARLHILGVMEQA 569
Query: 238 IS 239
IS
Sbjct: 570 IS 571
Score = 94.1 bits (232), Expect = 1e-17, Method: Composition-based stats.
Identities = 37/232 (15%), Positives = 75/232 (32%), Gaps = 27/232 (11%)
Query: 14 ISLTRRV-SKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----HGWITAEYGMLPR 68
++L + ++ A + +V DT + T ++K + T G +P
Sbjct: 45 VTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKSKPGQDFFPLTVNYQERTYAAGRIPG 104
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
S R GR I R+I R +R + + Q+I +
Sbjct: 105 SFFRR------EGRPSEGETLISRLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVHPDIV 158
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+ GA A G + A G + +++ E +D
Sbjct: 159 AMIGASAA-------------LALSGLPFNGPIGAARVGYINDQYVLNPTADELKQSRLD 205
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
T + ++ V+ AE S++ + D+ +I+ +++
Sbjct: 206 LVVAGTQN-AVLMVESEAEI--LSEEQMLGAVVFGHDQQQIVIENINALVAE 254
>gi|254416087|ref|ZP_05029842.1| 3' exoribonuclease family, domain 2 [Microcoleus chthonoplastes PCC
7420]
gi|196177020|gb|EDX72029.1| 3' exoribonuclease family, domain 2 [Microcoleus chthonoplastes PCC
7420]
Length = 715
Score = 147 bits (371), Expect = 1e-33, Method: Composition-based stats.
Identities = 44/243 (18%), Positives = 88/243 (36%), Gaps = 19/243 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSK-YAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTK 55
+R+ GR+ +++R +S + GS L G T +L+T T + ++ + +
Sbjct: 322 VRVDGRKLDEVRPVSCQVGLLPSRVHGSGLFNRGLTQVLSTVTLGTPGDAQMLDDLNPEE 381
Query: 56 HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115
Y P S G + R+ G RA+ ++ I +
Sbjct: 382 EKRYLHHYNFPPFSVGETKPMRSPGRREIGHGAL----AERAIIPILPPQNEFPYVIRVV 437
Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIV 175
+V+ ++G T ++ G+ +AL D + + + + +G +
Sbjct: 438 SEVLSSNGSTSMGSVCGSTLALMDAGVPITKPVSGAAMGLIKEGDEV---------RILT 488
Query: 176 DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
D+ ED D+D TDSG I +Q + + + AK +++
Sbjct: 489 DIQGIEDFLGDMDFKVAGTDSG-ITALQMDMKITGLPMETVAKAIEQAKPARLHILEKML 547
Query: 236 DVI 238
I
Sbjct: 548 AAI 550
Score = 103 bits (256), Expect = 2e-20, Method: Composition-based stats.
Identities = 48/235 (20%), Positives = 84/235 (35%), Gaps = 26/235 (11%)
Query: 10 QMREISLTRRV-SKYAEGSCLVKFGDTHLLTTAT---LEEKVPMWIRNTKHGWITAEYGM 65
R+I L + + A GS L++ GDT +L TAT E + + G
Sbjct: 11 DGRDIRLRAGLLAPQAGGSVLIESGDTAVLVTATRSAGREGIDFLPLLVDYEERLYAAGR 70
Query: 66 LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125
+P R GR + R+I R LR + QI+ +
Sbjct: 71 IPGGFLRR------EGRPPEKVTLTSRLIDRPLRPLFPSWLRDDIQIVATTLSMDEQVPP 124
Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185
A+TGA VA+ +AA+ G++ I++ Y E
Sbjct: 125 DVLAVTGASVAVLQAQIPFYG-------------PMAAVRVGLVGDDFIINPTYREIDNG 171
Query: 186 DVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
D+D + G ++ V+ A + + + + + DLI Q++++
Sbjct: 172 DLDLVVAGSPQG-VIMVEAGANQ--LPERDIIEAIEFGYEAVQDLIAAQENLLKE 223
>gi|294507800|ref|YP_003571858.1| polyribonucleotide nucleotidyltransferase [Salinibacter ruber M8]
gi|294344128|emb|CBH24906.1| polyribonucleotide nucleotidyltransferase [Salinibacter ruber M8]
Length = 745
Score = 147 bits (371), Expect = 1e-33, Method: Composition-based stats.
Identities = 46/243 (18%), Positives = 86/243 (35%), Gaps = 18/243 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR + +R++ + GS + G+T +L + TL + + +
Sbjct: 355 RIDGRDQTDVRDLWMEVGYLPRVHGSAIFTRGETQVLGSITLGTSDDVQPVDEVFADTDK 414
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G R+ G + RALR V+ I I+ D
Sbjct: 415 SFYLHYRFPPFSVGEASYLRGPKRREIG----HSMLAERALRPVIPEQDAFPYTIRINAD 470
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
V++++G + A++ +AL D +E + V + + +
Sbjct: 471 VMESNGSSSMASVCAGSLALMDAGVPIEKPVAGIAMGLVQEDDETTVLTD---------I 521
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T G I Q + S+D L ++D ++ ++
Sbjct: 522 LGQEDHLGDMDFKLTGTRDG-ITACQMDMKIEGLSRDVMLKALKQSRDARHHILDRMEET 580
Query: 238 ISN 240
I+
Sbjct: 581 IAE 583
Score = 83.4 bits (204), Expect = 2e-14, Method: Composition-based stats.
Identities = 49/233 (21%), Positives = 81/233 (34%), Gaps = 26/233 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKV---PMWIRNTKHGWITAEYGMLP 67
R +SL ++K A+GS + + GDT +L+TATL + V + + A G +P
Sbjct: 49 RSLSLETGRIAKQADGSVVARLGDTMVLSTATLSDSVNESNFFPLTVDYREKFAAGGKVP 108
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R GR + R+I RA+R + ++ D
Sbjct: 109 GGFIKR------EGRPTDKETLTSRLIDRAIRPLFPDGFYHDVHVVNFVISAGQDFDADV 162
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
A G+ AL A + G + G IV+ + D+
Sbjct: 163 IAGVGSSAALMLSGAPFAG-------------PFAEVRVGRVDGDYIVNPTMQQTEESDI 209
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
D +V V+G AE + L++A I L + Q ++
Sbjct: 210 DLVVAG-KEDALVMVEGEAEEISEESM--IEALDVAHRSIRRLCEGQHRLVEQ 259
>gi|223040232|ref|ZP_03610510.1| polyribonucleotide nucleotidyltransferase
(Polynucleotidephosphorylase) (PNPase) [Campylobacter
rectus RM3267]
gi|222878485|gb|EEF13588.1| polyribonucleotide nucleotidyltransferase
(Polynucleotidephosphorylase) (PNPase) [Campylobacter
rectus RM3267]
Length = 735
Score = 147 bits (371), Expect = 1e-33, Method: Composition-based stats.
Identities = 47/239 (19%), Positives = 86/239 (35%), Gaps = 14/239 (5%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT--KHGW 58
+R GR +R IS+ + A GSCL G T L ATL + + + G
Sbjct: 342 VRADGRGLKDVRPISIETNILPNAHGSCLFTRGQTQALVVATLGTDGDAQMYDMLTEKGA 401
Query: 59 ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDV 118
+T ++ G V + G R + RAL +D + I + ++
Sbjct: 402 VTDKFMFNYNFPGFSVGEASPLKAPGRRELGHGNLAKRALAPSIDSDS--PYTIRLVSEI 459
Query: 119 IQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLD 178
++++G + A++ G +AL + + +G A+ ++
Sbjct: 460 LESNGSSSMASVCGGSLALRAAGVDTPKLVAGVAMGLIFEGEKHAVLTDIM--------- 510
Query: 179 YGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D + G I +Q + S D L A + ++ L +
Sbjct: 511 GLEDHDGDMDFKVAGSKDG-ITALQMDIKLGGISLDVLKEALLQACEGRLHILNLMETA 568
Score = 72.2 bits (175), Expect = 6e-11, Method: Composition-based stats.
Identities = 37/240 (15%), Positives = 78/240 (32%), Gaps = 24/240 (10%)
Query: 20 VSKYAEGSCLVKFGDTHLLTTATLEE---KVPMWIRNTKHGWITAEYGMLPRSTGNRVKR 76
V+K A G+ L++ +T +L T E+ ++ T G +P R
Sbjct: 19 VAKQASGAALLRVKNTVVLATVAREDTQVSEDFLPLTVQYIEKTYAAGRIPGGYVKR--- 75
Query: 77 EAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVA 136
+ G R+I R+LR + QI++ + + A+ A VA
Sbjct: 76 ---ETKPGDFETLTSRIIDRSLRPLFPKGYAYPTQIVVMVLSCDPEVDLQVVALNAASVA 132
Query: 137 LHDCLQHMEDCSNKFQL-SQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTD 195
L+ + ++ K + + + + + +D + ++ + T
Sbjct: 133 LYLSDIPVNAPVCGVRVGYIDNKFVINPSNSELKTSALDLYVAGVKDELLMIEMRSIATQ 192
Query: 196 SGHIV--------------EVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
++ EV + + FS+D + A I ++ S
Sbjct: 193 KDEMMPIALDPMMDPNLGGEVIATQDMNEFSEDLIVEAIAEAGKAILRASNAYEEAFSQH 252
>gi|125972939|ref|YP_001036849.1| polynucleotide phosphorylase/polyadenylase [Clostridium
thermocellum ATCC 27405]
gi|281417150|ref|ZP_06248170.1| polyribonucleotide nucleotidyltransferase [Clostridium thermocellum
JW20]
gi|187610261|sp|A3DCH7|PNP_CLOTH RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|125713164|gb|ABN51656.1| Polyribonucleotide nucleotidyltransferase [Clostridium thermocellum
ATCC 27405]
gi|281408552|gb|EFB38810.1| polyribonucleotide nucleotidyltransferase [Clostridium thermocellum
JW20]
Length = 700
Score = 147 bits (371), Expect = 1e-33, Method: Composition-based stats.
Identities = 43/244 (17%), Positives = 82/244 (33%), Gaps = 16/244 (6%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHG 57
R+ GR+ +++R +S + GS L G T +L++ T + ++ I +
Sbjct: 312 RVDGRRLDEIRPLSAEVGLLPRVHGSGLFTRGQTQVLSSVTLGAMGDVQILDGIDTEETK 371
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y S G R+ G RAL V+ I + +
Sbjct: 372 RYMHHYNFPGFSVGEAKSSRGPGRREIGHGAL----AERALEPVIPSEEEFPYTIRVVSE 427
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
V+ ++G T ++ G+ +AL D ++ V+ +D+
Sbjct: 428 VLMSNGSTSQGSVCGSTLALMDAGVPIKKPVAGISAGLVVD------ENNPDRFVTFMDI 481
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK-LQKD 236
ED D+D T G I +Q + +++ L + +I +
Sbjct: 482 QGIEDFFGDMDFKVAGTKDG-ITAIQVDIKIDGLTEEIIKQAFELTRKGRLYIIDNVLLK 540
Query: 237 VISN 240
I
Sbjct: 541 AIPE 544
Score = 108 bits (269), Expect = 7e-22, Method: Composition-based stats.
Identities = 41/234 (17%), Positives = 80/234 (34%), Gaps = 27/234 (11%)
Query: 12 REISLTRRVSKY-AEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKHGWITAEYGML 66
R +++ A GS LV++GDT +L+TAT E V + + + G +
Sbjct: 12 RTLTIETGKLAQLANGSVLVRYGDTVVLSTATASATPREGVDFFPLSVDYEERLYAVGKI 71
Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
P R G+ ++ R+I R LR + I+ + D
Sbjct: 72 PGGFIKR------EGKPSEKAILTARVIDRPLRPLFPKDLRNDVAIVNTVLSVDQDNSPE 125
Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
AA+ G+ +A+ G V A+ G++ G I++ +
Sbjct: 126 LAALLGSSIAV-------------SISDIPFNGPVGAVILGLIDGEVIINPTEKQKEISQ 172
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
+ T + IV ++ A + + + I ++ ++
Sbjct: 173 MYVTLAGTRN-KIVMIEAGANEVP--DEVMLDAIKKGHEEIKKIVDFIDGIVKE 223
>gi|298387792|ref|ZP_06997342.1| polyribonucleotide nucleotidyltransferase [Bacteroides sp. 1_1_14]
gi|298259397|gb|EFI02271.1| polyribonucleotide nucleotidyltransferase [Bacteroides sp. 1_1_14]
Length = 708
Score = 147 bits (371), Expect = 1e-33, Method: Composition-based stats.
Identities = 48/243 (19%), Positives = 87/243 (35%), Gaps = 18/243 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHG 57
RL GR+ ++R I GS + G+T LT+ T L+EK+ +
Sbjct: 319 RLDGRKTTEIRPIWCEVGPLPGPHGSAIFTRGETQSLTSVTLGTKLDEKIIDNVLEHGKE 378
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P STG + V R+ G RAL+ + + + +
Sbjct: 379 RFLLHYNFPPFSTGEAKAQRGVGRREIGHGHL----AWRALKGQIPADY--PYVVRVVSE 432
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+++++G + A + +AL D ++ + + + G + D+
Sbjct: 433 ILESNGSSSMATVCAGTLALMDAGVKIKKPVSGIAMGLIKN-------PGEEKYAVLSDI 485
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T G I Q + S + LN AK+ ++ +
Sbjct: 486 LGDEDHLGDMDFKVTGTRDG-ITATQMDIKVDGLSYEILERALNQAKEGRMHILDKITET 544
Query: 238 ISN 240
I+
Sbjct: 545 IAE 547
Score = 107 bits (266), Expect = 2e-21, Method: Composition-based stats.
Identities = 39/241 (16%), Positives = 76/241 (31%), Gaps = 26/241 (10%)
Query: 3 LSGRQENQMREISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
GR I+L ++K A+GS +++ G+T LL T +
Sbjct: 12 PDGRT------ITLETGKLAKQADGSVMLRMGNTMLLATVCAAKDAVPGTDFMPLQVEYK 65
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
E GR R++ RALR + +
Sbjct: 66 EKFAAFGRFP--GGFTKREGRASDYEILTCRLVDRALRPLFPDNYHAEVY---------- 113
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
+ V + D L + + G ++ + + G +++ + +
Sbjct: 114 ---VNIILFSADGVDMPDALAGLAASAALAVSDIPFNGPISEVRVARIDGQFVINPTFDQ 170
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
D+D T +I+ V+ E S+ + +A + I K Q + ++ E
Sbjct: 171 LEKADMDLMVAATYD-NIMMVE--GEMHEVSEAELLEAMKVAHEAIKVHCKAQME-LTEE 226
Query: 242 V 242
V
Sbjct: 227 V 227
>gi|217035383|pdb|3CDJ|A Chain A, Crystal Structure Of The E. Coli KhS1 DOMAIN TRUNCATED
Pnpase
Length = 559
Score = 147 bits (371), Expect = 1e-33, Method: Composition-based stats.
Identities = 45/242 (18%), Positives = 92/242 (38%), Gaps = 18/242 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR+++ +R + + V GS L G+T L TATL + +V + +
Sbjct: 321 RIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVLDELMGERTD 380
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + R+ G + R + +V+ + + +
Sbjct: 381 TFLFHYNFPPYSVGETGMVGSPKRREIGHGRL----AKRGVLAVMPDMDKFPYTVRVVSE 436
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ GA +AL D ++ + V +G + +
Sbjct: 437 ITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLSD---------I 487
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D + G I +Q + +++ LN AK ++ + +
Sbjct: 488 LGDEDHLGDMDFKVAGSRDG-ISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQA 546
Query: 238 IS 239
I+
Sbjct: 547 IN 548
Score = 95.7 bits (236), Expect = 5e-18, Method: Composition-based stats.
Identities = 36/232 (15%), Positives = 76/232 (32%), Gaps = 27/232 (11%)
Query: 14 ISLTRRV-SKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----HGWITAEYGMLPR 68
++L + ++ A + +V DT + T ++K + T G +P
Sbjct: 22 VTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVNYQERTYAAGRIPG 81
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
S R GR I R+I R +R + + Q+I +
Sbjct: 82 SFFRR------EGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVNPDIV 135
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+ GA A G + A G + +++ E +D
Sbjct: 136 AMIGASAA-------------LSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLD 182
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
T++ ++ V+ +E S+D + ++ +I+ +++
Sbjct: 183 LVVAGTEA-AVLMVE--SEAQLLSEDQMLGAVVFGHEQQQVVIQNINELVKE 231
>gi|305664512|ref|YP_003860799.1| putative polyribonucleotide nucleotidyltransferase [Maribacter sp.
HTCC2170]
gi|88708529|gb|EAR00765.1| putative polyribonucleotide nucleotidyltransferase [Maribacter sp.
HTCC2170]
Length = 737
Score = 147 bits (371), Expect = 1e-33, Method: Composition-based stats.
Identities = 46/243 (18%), Positives = 82/243 (33%), Gaps = 20/243 (8%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
+RL GR+ +++R I GS + G+T L T TL + +
Sbjct: 317 LRLDGRKTDEIRPIWCEVDYLPSTHGSSIFTRGETQALATVTLGTSRDANKIDMPSHEGE 376
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P TG S R+ G RAL+ +V + +
Sbjct: 377 ENFYLHYNFPPFCTGEARPLRGTSRREVGHGNL----AQRALKGMVP--EDCPYTVRVVS 430
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V++++G + A + +A+ D M + + + G A+
Sbjct: 431 EVLESNGSSSMATVCAGTMAMMDAGVQMTRPVSGIAMGLISDGDRYAVLSD--------- 481
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T G I Q + S + L A++ ++ D
Sbjct: 482 ILGDEDHLGDMDFKVTGTSEG-ITACQMDIKIKGLSYEILVNALKQAREGRLHILGKITD 540
Query: 237 VIS 239
I+
Sbjct: 541 TIA 543
Score = 98.4 bits (243), Expect = 7e-19, Method: Composition-based stats.
Identities = 34/232 (14%), Positives = 69/232 (29%), Gaps = 26/232 (11%)
Query: 7 QENQMREISLTRR-VSKYAEGSCLVKFGDTHLLTTA---TLEEKVPMWIRNTKHGWITAE 62
REIS+ ++K A GS +V+ G LL T + V + A
Sbjct: 11 DLGDGREISIETGKLAKQAHGSVVVQSGKCMLLCTVVSNYKQADVDFLPLTVDYREKFAA 70
Query: 63 YGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQAD 122
G P R R R++ R LR + Q
Sbjct: 71 AGRYPGGFFKR------EARPSDGEVLTMRLVDRVLRPLFPKDYHAETQ----------- 113
Query: 123 GGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGED 182
++ + + + + + + ++ G + G +++ +
Sbjct: 114 --VMIQLMSHDENVMPEAMAGLAASAAIQLSDFPFECAISEARVGRVNGEFVINPTRAQL 171
Query: 183 STIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
D++ + ++ V+ E S++ + A + I I Q
Sbjct: 172 EESDIEMMI-GASADSVMMVE--GEMDEISEEEMADAIKFAHEAIKVQIAAQ 220
>gi|284989916|ref|YP_003408470.1| ribonuclease PH [Geodermatophilus obscurus DSM 43160]
gi|284063161|gb|ADB74099.1| ribonuclease PH [Geodermatophilus obscurus DSM 43160]
Length = 250
Score = 147 bits (371), Expect = 1e-33, Method: Composition-based stats.
Identities = 112/239 (46%), Positives = 149/239 (62%), Gaps = 1/239 (0%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R GR +Q+R +++TR +AEGS LV+FG T +L A++ E VP W + + GW+TA
Sbjct: 9 RPDGRAADQLRPVTITRGWLDHAEGSVLVEFGRTRVLCAASVTEGVPRWRKGSGLGWVTA 68
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
EY MLPR+T R RE+V GR GGR+ EI R+IGR+LR+ +DL ALG + IDCDV+QA
Sbjct: 69 EYAMLPRATHTRGDRESVKGRIGGRTHEISRLIGRSLRAAIDLGALGENSVAIDCDVLQA 128
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
DGGTRTAAITGA+VAL D K + + VAA+S G++ G P +DL Y E
Sbjct: 129 DGGTRTAAITGAYVALADA-VGWLGERRKLARPRAVLQSVAAVSVGVVDGQPRLDLAYEE 187
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
D D N V T G VEVQG+AE F + A+L+LA A+L ++Q D +
Sbjct: 188 DVRAGTDMNVVCTGDGSFVEVQGTAENGVFDRAALDALLDLAVGGCAELSRIQADALQQ 246
>gi|88812956|ref|ZP_01128199.1| Polyribonucleotide nucleotidyltransferase [Nitrococcus mobilis
Nb-231]
gi|88789734|gb|EAR20858.1| Polyribonucleotide nucleotidyltransferase [Nitrococcus mobilis
Nb-231]
Length = 700
Score = 147 bits (371), Expect = 1e-33, Method: Composition-based stats.
Identities = 40/243 (16%), Positives = 83/243 (34%), Gaps = 18/243 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +R IS+ GS + G+T + TL + ++ I +
Sbjct: 317 RIDGRDNKTVRPISIEVATLPRTHGSAIFTRGETQAIVVTTLGTGRDAQIIDAIEGERKE 376
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G R+ G + R +++V+ I + +
Sbjct: 377 PFMLHYNFPPYSVGETGFMGVPKRREIGHGRL----AKRGIQAVMPSQEECPYVIRVVSE 432
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A + G +AL D ++ + + + A+ +
Sbjct: 433 ITESNGSSSMATVCGTSLALMDAGVPIKAPVAGIAMGLIKEESEFAVLTD---------I 483
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T+ G + +Q + ++ L A+ ++ V
Sbjct: 484 LGDEDHLGDMDFKVAGTEEG-VTALQMDIKINGITRQIMEVALEQARTGRLHILSKMNAV 542
Query: 238 ISN 240
I+
Sbjct: 543 IAK 545
Score = 98.4 bits (243), Expect = 8e-19, Method: Composition-based stats.
Identities = 36/233 (15%), Positives = 76/233 (32%), Gaps = 28/233 (12%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGMLPR 68
++L +++ A G+ +V DT +L T E + T G +P
Sbjct: 15 VTLETGRIARQASGAVMVNMSDTVVLVTVVGKKDQGEPRDFLPLTVNYQERTYAAGKIPG 74
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
R GR + + R+I R +R + QI+ + +
Sbjct: 75 GFFKR------EGRPSEKETLVSRLIDRPVRPLFPAGFTNEVQIVATVISMNNEVDADIP 128
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+ GA A + A G G +++ + + + D+D
Sbjct: 129 AMIGASAA-------------LAVSGIPFDSPLGAGRVGYHKGAFVLNPTFSQLESSDLD 175
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
T ++ V+ +E S+ + +++ +I + ++ E
Sbjct: 176 LVVAGTAD-AVLMVE--SEANCLSEQTMLDAVIFGHEQMQTVIAAINE-LAQE 224
>gi|69248510|ref|ZP_00604759.1| Polyribonucleotide nucleotidyltransferase [Enterococcus faecium DO]
gi|258615105|ref|ZP_05712875.1| polynucleotide phosphorylase/polyadenylase [Enterococcus faecium
DO]
gi|293567824|ref|ZP_06679165.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
E1071]
gi|294614599|ref|ZP_06694503.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
E1636]
gi|294618481|ref|ZP_06698045.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
E1679]
gi|294621222|ref|ZP_06700407.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
U0317]
gi|314938851|ref|ZP_07846122.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
TX0133a04]
gi|314943656|ref|ZP_07850410.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
TX0133C]
gi|314949091|ref|ZP_07852451.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
TX0082]
gi|314952184|ref|ZP_07855202.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
TX0133A]
gi|314994554|ref|ZP_07859820.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
TX0133B]
gi|314996553|ref|ZP_07861590.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
TX0133a01]
gi|68194404|gb|EAN08910.1| Polyribonucleotide nucleotidyltransferase [Enterococcus faecium DO]
gi|291589409|gb|EFF21216.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
E1071]
gi|291592501|gb|EFF24106.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
E1636]
gi|291595238|gb|EFF26567.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
E1679]
gi|291599218|gb|EFF30250.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
U0317]
gi|313589294|gb|EFR68139.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
TX0133a01]
gi|313591076|gb|EFR69921.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
TX0133B]
gi|313595716|gb|EFR74561.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
TX0133A]
gi|313597693|gb|EFR76538.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
TX0133C]
gi|313641862|gb|EFS06442.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
TX0133a04]
gi|313644507|gb|EFS09087.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
TX0082]
Length = 736
Score = 147 bits (371), Expect = 1e-33, Method: Composition-based stats.
Identities = 45/243 (18%), Positives = 85/243 (34%), Gaps = 18/243 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56
+R GR+ +++R +S + GS L G T L+ T E ++ +
Sbjct: 346 IRPDGRKLDEIRPLSSEVSLLPRVHGSGLFTRGQTQALSACTLAPLGEHQIIDGLGVEVS 405
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y S G+ + + R+ G RAL V+ I +
Sbjct: 406 KRFIHHYNFPQFSVGSTGRAGSPGRREIGHGALG----ERALAQVIPSEEEFPYTIRLVA 461
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V++++G + A+I +AL D ++ + V G + D
Sbjct: 462 EVLESNGSSSQASICAGTLALMDAGVPIKAPVAGIAMGLVSDGE---------NYTILTD 512
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T G I +Q + ++ L AK ++++
Sbjct: 513 IQGLEDHLGDMDFKVAGTKDG-ITALQMDIKIQGITEQILTEALTQAKQARMEILEELTS 571
Query: 237 VIS 239
I+
Sbjct: 572 TIA 574
Score = 113 bits (282), Expect = 2e-23, Method: Composition-based stats.
Identities = 41/231 (17%), Positives = 84/231 (36%), Gaps = 26/231 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEK---VPMWIRNTKHGWITAEYGMLP 67
R + + ++K A G+ LV++GDT +L+ A ++ + + G +P
Sbjct: 42 RPLQIEVGQLAKQANGAVLVRYGDTVVLSAAVASKEAKDTDFFPLTINYEEKMYAAGKIP 101
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R GR + R+I R +R + Q+ ++ D
Sbjct: 102 GGFIKR------EGRPSTEATLTARLIDRPIRPMFAEGFRNEVQVTNIVMSVETDCSPAM 155
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
AA+ G+ +A G +A + G + G +++ + D+
Sbjct: 156 AAMLGSSLA-------------LSISDIPFDGPIAGVEVGRVNGEYVLNPTVEQAEQTDI 202
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
+ T I V+ A+ S++ L D I +L+ Q++++
Sbjct: 203 ELTVAGTKQ-AINMVESGAKE--VSEEDMLGALLFGFDAIKELVAFQEEIV 250
>gi|256005694|ref|ZP_05430650.1| Polyribonucleotide nucleotidyltransferase [Clostridium thermocellum
DSM 2360]
gi|255990325|gb|EEU00451.1| Polyribonucleotide nucleotidyltransferase [Clostridium thermocellum
DSM 2360]
gi|316940825|gb|ADU74859.1| polyribonucleotide nucleotidyltransferase [Clostridium thermocellum
DSM 1313]
Length = 700
Score = 147 bits (371), Expect = 1e-33, Method: Composition-based stats.
Identities = 43/244 (17%), Positives = 82/244 (33%), Gaps = 16/244 (6%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHG 57
R+ GR+ +++R +S + GS L G T +L++ T + ++ I +
Sbjct: 312 RVDGRRLDEIRPLSAEVGLLPRVHGSGLFTRGQTQVLSSVTLGAMGDVQILDGIDTEETK 371
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y S G R+ G RAL V+ I + +
Sbjct: 372 RYMHHYNFPGFSVGEAKSSRGPGRREIGHGAL----AERALEPVIPSEEEFPYTIRVVSE 427
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
V+ ++G T ++ G+ +AL D ++ V+ +D+
Sbjct: 428 VLMSNGSTSQGSVCGSTLALMDAGVPIKKPVAGISAGLVVD------ENNPDRFVTFMDI 481
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK-LQKD 236
ED D+D T G I +Q + +++ L + +I +
Sbjct: 482 QGIEDFFGDMDFKVAGTKDG-ITAIQVDIKIDGLTEEIIKQAFELTRKGRLYIIDNVLLK 540
Query: 237 VISN 240
I
Sbjct: 541 AIPE 544
Score = 108 bits (270), Expect = 6e-22, Method: Composition-based stats.
Identities = 41/234 (17%), Positives = 80/234 (34%), Gaps = 27/234 (11%)
Query: 12 REISLTRRVSKY-AEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKHGWITAEYGML 66
R +++ A GS LV++GDT +L+TAT E V + + + G +
Sbjct: 12 RTLTIETGKLAQLANGSVLVRYGDTVVLSTATASATPREGVDFFPLSVDYEERLYAVGKI 71
Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
P R G+ ++ R+I R LR + I+ + D
Sbjct: 72 PGGFIKR------EGKPSEKAILTARVIDRPLRPLFPKDLRNDVAIVNTVLSVDQDNSPE 125
Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
AA+ G+ +A+ G V A+ G++ G I++ +
Sbjct: 126 LAALLGSSIAV-------------SISDIPFNGPVGAVILGLIDGEVIINPTEKQREISQ 172
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
+ T + IV ++ A + + + I ++ ++
Sbjct: 173 MYVTLAGTRN-KIVMIEAGANEVP--DEVMLDAIKKGHEEIKKIVDFIDGIVKE 223
>gi|255003073|ref|ZP_05278037.1| polynucleotide phosphorylase/polyadenylase [Anaplasma marginale
str. Puerto Rico]
Length = 805
Score = 147 bits (371), Expect = 1e-33, Method: Composition-based stats.
Identities = 51/243 (20%), Positives = 84/243 (34%), Gaps = 18/243 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +Q+R I + + + GS L GDT L L +E+V +
Sbjct: 320 RVDGRGFDQIRNIEIEVDLIPRSHGSALFTRGDTQALVITALGTPQDEQVVDGFDGDRRE 379
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y + G R+ G + RA+ V+ A I + +
Sbjct: 380 RFLLHYNFPSYAVGEAAALRPPGRREIGHGKL----AWRAIHPVLPTKADFPYTIRVVSE 435
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ ++DG + A + GA +AL D ++ + + +G A+ +
Sbjct: 436 ITESDGSSSMATVCGASLALMDTGVPLKSSVAGIAMGLIKEGDRYAVLSD---------I 486
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T G I +Q + D L AKD +I V
Sbjct: 487 IGDEDYLGDMDFKVAGTKDG-ITALQMDMKIRGIGFDIIEKSLQQAKDGRLFIIGKMDKV 545
Query: 238 ISN 240
I
Sbjct: 546 IKE 548
Score = 73.3 bits (178), Expect = 3e-11, Method: Composition-based stats.
Identities = 36/229 (15%), Positives = 81/229 (35%), Gaps = 24/229 (10%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLE---EKVPMWIRNTKHGWITAEYGMLP 67
R + + +++ A+G+ +V +G T +L+T + E V + + G +P
Sbjct: 14 RLLVIESGKIARQADGAVVVDYGGTSVLSTVVSQKSKEPVDFLPLTVQFLAKSYAIGRIP 73
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R G+ R I R++ R++R + I+ + T
Sbjct: 74 GGFFKR------EGKPSDRETLISRLVDRSIRPLFPTGFCDESVIVCNLLSYDQVSPPET 127
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
A+ GA AL ++ + + I++ E + ++
Sbjct: 128 VALIGAAAALAISGIPFPTPIAGAKIGYIREEE-----------RYILNPSAEELARSEL 176
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
D + T S +V V+ A + ++ + + A ++ L ++
Sbjct: 177 DMFYSGTKS-SVVMVESEASELS--EEEMLGAVTFGHENCAQVLDLIEE 222
>gi|83814865|ref|YP_445890.1| polynucleotide phosphorylase/polyadenylase [Salinibacter ruber DSM
13855]
gi|83756259|gb|ABC44372.1| polyribonucleotide nucleotidyltransferase [Salinibacter ruber DSM
13855]
Length = 722
Score = 147 bits (371), Expect = 1e-33, Method: Composition-based stats.
Identities = 46/243 (18%), Positives = 86/243 (35%), Gaps = 18/243 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR + +R++ + GS + G+T +L + TL + + +
Sbjct: 332 RIDGRDQTDVRDLWMEVGYLPRVHGSAIFTRGETQVLGSITLGTSDDVQPVDEVFADTDK 391
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G R+ G + RALR V+ I I+ D
Sbjct: 392 SFYLHYRFPPFSVGEASYLRGPKRREIG----HSMLAERALRPVIPEQDEFPYTIRINAD 447
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
V++++G + A++ +AL D +E + V + + +
Sbjct: 448 VMESNGSSSMASVCAGSLALMDAGVPIEKPVAGIAMGLVQEDDETTVLTD---------I 498
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T G I Q + S+D L ++D ++ ++
Sbjct: 499 LGQEDHLGDMDFKLTGTRDG-ITACQMDMKIEGLSRDVMLKALKQSRDARHHILDRMEET 557
Query: 238 ISN 240
I+
Sbjct: 558 IAE 560
Score = 83.4 bits (204), Expect = 3e-14, Method: Composition-based stats.
Identities = 49/233 (21%), Positives = 81/233 (34%), Gaps = 26/233 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKV---PMWIRNTKHGWITAEYGMLP 67
R +SL ++K A+GS + + GDT +L+TATL + V + + A G +P
Sbjct: 26 RSLSLETGRIAKQADGSVVARLGDTMVLSTATLSDSVNESNFFPLTVDYREKFAAGGKVP 85
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R GR + R+I RA+R + ++ D
Sbjct: 86 GGFIKR------EGRPTDKETLTSRLIDRAIRPLFPDGFYHDVHVVNFVISAGQDFDADV 139
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
A G+ AL A + G + G IV+ + D+
Sbjct: 140 IAGVGSSAALMLSGAPFAG-------------PFAEVRVGRVDGDYIVNPTMQQTEESDI 186
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
D +V V+G AE + L++A I L + Q ++
Sbjct: 187 DLVVAG-KEDALVMVEGEAEEISEESM--IEALDVAHRSIRRLCEGQHRLVEQ 236
>gi|315924496|ref|ZP_07920717.1| polyribonucleotide nucleotidyltransferase [Pseudoramibacter
alactolyticus ATCC 23263]
gi|315622200|gb|EFV02160.1| polyribonucleotide nucleotidyltransferase [Pseudoramibacter
alactolyticus ATCC 23263]
Length = 693
Score = 147 bits (371), Expect = 1e-33, Method: Composition-based stats.
Identities = 45/244 (18%), Positives = 84/244 (34%), Gaps = 18/244 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
+R R Q+R +++ GS L G+T + + ATL E + +
Sbjct: 310 IRPDNRGMTQVRPLAVKVDYIPRVHGSALFTRGETQVCSVATLGLLKEAQTLDGLELESK 369
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y S G R+ G RAL V+ I +
Sbjct: 370 KRYMHNYNFPSYSVGETRPSRGPGRREIGHGAL----AERALLPVLPSEEDFPYAIRVVS 425
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V+ ++G T A++ G+ +AL ++ + + + AI
Sbjct: 426 EVMSSNGSTSQASVCGSSMALMAAGVPIKKQVAGCAMGLIKEDEKLAILTD--------- 476
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T+ G I +Q + ++ LN A++ ++ + D
Sbjct: 477 IQGMEDFLGDMDFKVAGTEDG-ITAIQMDIKIHGIDREILTKALNQAREGRLFILGVMND 535
Query: 237 VISN 240
I+
Sbjct: 536 AIAQ 539
Score = 98.4 bits (243), Expect = 7e-19, Method: Composition-based stats.
Identities = 33/234 (14%), Positives = 77/234 (32%), Gaps = 27/234 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT----KHGWITAEYGML 66
R + V++ A+ + +V++GDT LL T+ +K + + G +
Sbjct: 11 RPFRVEIGEVARLAKAAAMVRYGDTSLLCNVTVSKKPREGMDFFPLSVDYEEKQYAVGKI 70
Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
P R GR ++ R+I R +R + ++ ++ D
Sbjct: 71 PGGFLKR------EGRPSNQAILNSRLIDRPIRPLFPKGFRNDVHVVTMVMSVEHDNAPE 124
Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
+ G+ + G AA+ G++ G +++ + +
Sbjct: 125 LVGMLGSSIV-------------LSISDLPFDGPTAAVQVGLIDGEFVLNPTAAQYEKSE 171
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
+ T ++ V+ A+ + + A I +I +++
Sbjct: 172 MHLTVAGTRE-AVMMVEAGADE--IPEATMLDAILYAHKEIKKIISFIDQIVAE 222
>gi|300718573|ref|YP_003743376.1| polyribonucleotide nucleotidyltransferase [Erwinia billingiae
Eb661]
gi|299064409|emb|CAX61529.1| Polyribonucleotide nucleotidyltransferase [Erwinia billingiae
Eb661]
Length = 714
Score = 147 bits (371), Expect = 1e-33, Method: Composition-based stats.
Identities = 45/242 (18%), Positives = 91/242 (37%), Gaps = 18/242 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR+++ +R + + V GS L G+T L TATL + + + K
Sbjct: 315 RIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQNLDELMGEKTD 374
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P G + R+ G + R + +V+ + + + +
Sbjct: 375 SFLFHYNFPPYCVGETGMVGSPKRREIGHGRL----AKRGVLAVMPKADAFPYTVRVVSE 430
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ GA +AL D ++ + V +G + +
Sbjct: 431 ITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGENFVVLSD---------I 481
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D + G I +Q + +++ LN AK ++ + +
Sbjct: 482 LGDEDHLGDMDFKVAGSREG-ITALQMDIKIEGITREIMQVALNQAKGARLHILGVMEQA 540
Query: 238 IS 239
IS
Sbjct: 541 IS 542
Score = 96.5 bits (238), Expect = 3e-18, Method: Composition-based stats.
Identities = 38/232 (16%), Positives = 73/232 (31%), Gaps = 27/232 (11%)
Query: 14 ISLTRRV-SKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----HGWITAEYGMLPR 68
+++ + ++ A + +V DT + T ++ + T G +P
Sbjct: 16 VTIETGMMARQATAAVMVSMDDTAVFVTVVGKKTTKPGQDFFPLTVNYQERTYAAGRIPG 75
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
S R GR I R+I R +R + + QII +
Sbjct: 76 SFFRR------EGRPSEGETLISRLIDRPVRPLFPEGFINEVQIIATVVSVNPQVHPDIV 129
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+ GA A G + A G L +++ E +D
Sbjct: 130 ALIGASAA-------------LSLSGLPFNGPIGAARVGYLNDQYVLNPTTDELKESKLD 176
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
T G ++ V+ AE S+D + ++ +I +++
Sbjct: 177 LVVAGTQ-GAVLMVESEAEL--LSEDQMLGAVVFGHEQQQVVIDQINALVAE 225
>gi|219685671|ref|ZP_03540485.1| polyribonucleotide nucleotidyltransferase
(Polynucleotidephosphorylase) [Borrelia garinii Far04]
gi|219672787|gb|EED29812.1| polyribonucleotide nucleotidyltransferase
(Polynucleotidephosphorylase) [Borrelia garinii Far04]
Length = 721
Score = 147 bits (371), Expect = 1e-33, Method: Composition-based stats.
Identities = 45/244 (18%), Positives = 86/244 (35%), Gaps = 19/244 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
+R GR N++R++ + GS L G+T L TL +E++ I K
Sbjct: 315 IRTDGRTPNEIRDVIAEVDILSRTHGSALFTRGETQALAVTTLGTSIDEQIMDDIDGDKR 374
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P S G + R+ G RAL S+V I +
Sbjct: 375 LNFMLHYNFPPFSVGETGRLMTGR-REIGHGHL----AQRALESMVPGKNDFPYTIRVVS 429
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
++++++G + A + ++L ++ + + +G +
Sbjct: 430 EILESNGSSSMATVCAGSMSLMSAGVPVKRQVAGIAMGLISEGDKYVVLSD--------- 480
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T +G I Q + ++ L A+ ++ +
Sbjct: 481 ILGEEDHLGDMDFKVAGTKNG-ITGFQMDIKIENVTKHLMRDALEQARIGRMHILSVMDT 539
Query: 237 VISN 240
VIS+
Sbjct: 540 VISD 543
Score = 109 bits (273), Expect = 3e-22, Method: Composition-based stats.
Identities = 46/240 (19%), Positives = 80/240 (33%), Gaps = 32/240 (13%)
Query: 5 GRQENQMREISLTRRV-SKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----HGWI 59
GR E+ +K A GS L +G + +L T V + +
Sbjct: 10 GRD-----ELVFETGFMAKQANGSVLATYGGSSVLATVCCSNNVREDLDFVPLSVEYNEK 64
Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119
G +P R G+ + + R+I R +R + D Q+I
Sbjct: 65 YYAAGKIPGGFIKR------EGKPKDKEILVSRLIDRPMRPLFDKRFGREIQVIPTTLAT 118
Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179
+ A+ A+ G +AA+ L G IV+ +
Sbjct: 119 DQLNPPDIVGMNAAFTAVF-------------LSDIPFNGPIAAVRMVYLNGEFIVNPSF 165
Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
E D+D + +G I V+G A S+D + ++ A + I + QK+ +
Sbjct: 166 EEIHNSDLDIVVAGSLNG-ITMVEGGANE--VSEDILLSAIDGAHEYIKQICNAQKEFLE 222
>gi|262375116|ref|ZP_06068350.1| polyribonucleotide nucleotidyltransferase [Acinetobacter lwoffii
SH145]
gi|262310129|gb|EEY91258.1| polyribonucleotide nucleotidyltransferase [Acinetobacter lwoffii
SH145]
Length = 697
Score = 147 bits (371), Expect = 1e-33, Method: Composition-based stats.
Identities = 49/239 (20%), Positives = 89/239 (37%), Gaps = 10/239 (4%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R+ GR +R I + V A GS L G+T L T TL + +T G T
Sbjct: 317 RIDGRDTKTVRAIDVQVGVLDRAHGSALFTRGETQALVTTTLGNTRDALMVDTLAGTKTD 376
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
+ + V R R+ R +++V+ + I I D+ ++
Sbjct: 377 NFMLHYNFPAYSVGETGRESGPKRREIGHGRLARRGVQAVLPAADRFPYVIRIVSDITES 436
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
+G + A++ GA ++L D ++ + V +G A+ + E
Sbjct: 437 NGSSSMASVCGASLSLMDAGVPLKAPVAGIAMGLVKEGERFAVLSD---------ILGDE 487
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
D D+D + +G I +Q + +++ + LN A ++ VIS
Sbjct: 488 DHLGDMDFKVAGSANG-ITALQMDIKIEGITEEIMESALNQAYAGRMHILNEMNQVISR 545
Score = 68.7 bits (166), Expect = 6e-10, Method: Composition-based stats.
Identities = 37/237 (15%), Positives = 72/237 (30%), Gaps = 44/237 (18%)
Query: 13 EISLTRR-VSKYAEGSCLVKFGDTHLLTTA------------TLEEKVPMWIRNTKHGWI 59
+ L V++ A +T ++T + + +
Sbjct: 17 NVILETGRVARQA---------NTVVITMGGVQVLVAVVAQPKAKAGQDFFPLTVNYQEK 67
Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119
G +P G R GRQ I R+I R +R + Q+
Sbjct: 68 QYAAGRIPGGYGKR------EGRQSEAETLISRLIDRPIRPLFPEGYFNEIQVTATVISS 121
Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179
AA+ G AL +G + G++ G I++ +
Sbjct: 122 DKTMDADIAAMLGTSAALSIAGT-------------PFRGPIGGARVGLINGEYILNPNL 168
Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ D+D T++ ++ V+ A+ S+D + D + I+ K+
Sbjct: 169 EQLKESDLDLVVAGTET-AVLMVESEAKE--LSEDQMLGAVLFGHDEMQIAIQAIKE 222
>gi|228992535|ref|ZP_04152462.1| Polyribonucleotide nucleotidyltransferase [Bacillus pseudomycoides
DSM 12442]
gi|228998583|ref|ZP_04158170.1| Polyribonucleotide nucleotidyltransferase [Bacillus mycoides
Rock3-17]
gi|229006082|ref|ZP_04163770.1| Polyribonucleotide nucleotidyltransferase [Bacillus mycoides
Rock1-4]
gi|228755158|gb|EEM04515.1| Polyribonucleotide nucleotidyltransferase [Bacillus mycoides
Rock1-4]
gi|228761051|gb|EEM10010.1| Polyribonucleotide nucleotidyltransferase [Bacillus mycoides
Rock3-17]
gi|228767169|gb|EEM15805.1| Polyribonucleotide nucleotidyltransferase [Bacillus pseudomycoides
DSM 12442]
Length = 717
Score = 147 bits (371), Expect = 1e-33, Method: Composition-based stats.
Identities = 44/244 (18%), Positives = 85/244 (34%), Gaps = 18/244 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56
+R GR+ +++R ++ + GS L G T L+ T + ++ + +
Sbjct: 315 IRPDGRKGDEIRPLASEVGILSRTHGSGLFTRGQTQALSICTLGALGDVQILDGLGVEES 374
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y S G R+ G RAL V+ + +
Sbjct: 375 KRFMHHYNFPSFSVGETRPMRGPGRREIGHGALG----ERALEPVIPSEQDFPYTVRLVS 430
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V++++G T A+I G+ +A+ D ++ + V G + D
Sbjct: 431 EVLESNGSTSQASICGSTLAMMDAGVPLKAPVAGIAMGLVKSGE---------HYTILTD 481
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T G + +Q + A S++ L AK ++
Sbjct: 482 IQGMEDHLGDMDFKVAGTAQG-VTALQMDIKIAGLSREILEEALQQAKVGRMHILDHMLS 540
Query: 237 VISN 240
I+
Sbjct: 541 AIAE 544
Score = 114 bits (285), Expect = 1e-23, Method: Composition-based stats.
Identities = 43/231 (18%), Positives = 89/231 (38%), Gaps = 26/231 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATL---EEKVPMWIRNTKHGWITAEYGMLP 67
R++++ ++K A G+ LV++GDT +L+TAT + V + + G +P
Sbjct: 15 RQLTIETGQLAKQANGAVLVRYGDTAVLSTATASKEPKNVDFFPLTVNYEERLYAVGKIP 74
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R GR ++ R+I R +R + Q++ + D +
Sbjct: 75 GGFIKR------EGRPSEKAILASRLIDRPIRPLFADGFRNEVQVVSIVMSVDQDCSSEM 128
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
AA+ G+ +A +G +A + G + G I++ + D+
Sbjct: 129 AAMLGSSLA-------------LSISDVPFEGPIAGATVGRIDGEFIINPTVEQQEKSDI 175
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
T I V+ A++ ++ + D I L+ Q++++
Sbjct: 176 HLVVAGTKD-AINMVEAGADQVP--EEIMLEAIMFGHDEIKRLVAFQEEIV 223
>gi|152995062|ref|YP_001339897.1| polynucleotide phosphorylase/polyadenylase [Marinomonas sp. MWYL1]
gi|189037308|sp|A6VU33|PNP_MARMS RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|150835986|gb|ABR69962.1| Polyribonucleotide nucleotidyltransferase [Marinomonas sp. MWYL1]
Length = 702
Score = 147 bits (371), Expect = 1e-33, Method: Composition-based stats.
Identities = 41/242 (16%), Positives = 89/242 (36%), Gaps = 18/242 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +R I++ + GS L G+T + T TL + ++ +
Sbjct: 315 RIDGRDNKTVRPINVEVGLLSKTHGSALFTRGETQAIATCTLGTSRDSQMTDGLTGESKD 374
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + V R+ G + R +++V+ I + +
Sbjct: 375 SFMLHYNFPPYSVGECGRMGGVGRREIGHGRL----ARRGVQAVLPSEDEFPYTIRVVSE 430
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ GA +++ D ++ + + + A+ +
Sbjct: 431 ITESNGSSSMASVCGASLSMMDAGVPLKAPVAGIAMGLIKEDDGFAVLTD---------I 481
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T G I +Q + +++ L+ A + +++ V
Sbjct: 482 LGDEDHLGDMDFKVAGTAEG-ITALQMDIKIEGINEEIMDIALSQALEARTHILREMAKV 540
Query: 238 IS 239
I
Sbjct: 541 IG 542
Score = 99.5 bits (246), Expect = 3e-19, Method: Composition-based stats.
Identities = 32/229 (13%), Positives = 66/229 (28%), Gaps = 28/229 (12%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT----KHGWITAEYGMLPR 68
++L +++ A G+ L GD +L T + + G +P
Sbjct: 15 VTLETGRIARQATGAVLCTIGDAQVLATVVGAKSAKAGQDFFPLSVHYQERAYAVGKIPG 74
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
R GR + R+I R +R + + Q++ + A
Sbjct: 75 GFLKR------EGRPSEKETLTSRLIDRPIRPLFPKGFMNEVQVVCTVMSTNTNLDADIA 128
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY-PIVDLDYGEDSTIDV 187
A+ A G + A G +++ Y + +
Sbjct: 129 AMLATSAA-------------LTISGIPFNGPIGAARVGFNDESGYVLNPSYSDLDGSLL 175
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
D T ++ V+ A+ ++D + A + I +
Sbjct: 176 DMVVAGTKD-AVLMVESEAQE--LTEDEMLGAVLYAHKEMQAAISAITE 221
>gi|56416731|ref|YP_153805.1| polynucleotide phosphorylase/polyadenylase [Anaplasma marginale
str. St. Maries]
gi|81359135|sp|Q5PAY0|PNP_ANAMM RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|56387963|gb|AAV86550.1| polyribonucleotide nucleotidyltransferase [Anaplasma marginale str.
St. Maries]
Length = 805
Score = 147 bits (371), Expect = 1e-33, Method: Composition-based stats.
Identities = 51/243 (20%), Positives = 84/243 (34%), Gaps = 18/243 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +Q+R I + + + GS L GDT L L +E+V +
Sbjct: 320 RVDGRGFDQIRNIEIEVDLIPRSHGSALFTRGDTQALVITALGTPQDEQVVDGFDGDRRE 379
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y + G R+ G + RA+ V+ A I + +
Sbjct: 380 RFLLHYNFPSYAVGEAAALRPPGRREIGHGKL----AWRAIHPVLPTKADFPYTIRVVSE 435
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ ++DG + A + GA +AL D ++ + + +G A+ +
Sbjct: 436 ITESDGSSSMATVCGASLALMDTGVPLKSSVAGIAMGLIKEGDRYAVLSD---------I 486
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T G I +Q + D L AKD +I V
Sbjct: 487 IGDEDYLGDMDFKVAGTKDG-ITALQMDMKIRGIGFDIIEKSLQQAKDGRLFIIGKMDKV 545
Query: 238 ISN 240
I
Sbjct: 546 IKE 548
Score = 72.6 bits (176), Expect = 5e-11, Method: Composition-based stats.
Identities = 36/229 (15%), Positives = 81/229 (35%), Gaps = 24/229 (10%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLE---EKVPMWIRNTKHGWITAEYGMLP 67
R + + +++ A+G+ +V +G T +L+T + E V + + G +P
Sbjct: 14 RLLVIESGKIARQADGAVVVDYGGTSVLSTVVSQKSKEPVDFLPLTVQFLAKSYAIGRIP 73
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R G+ R I R++ R++R + I+ + T
Sbjct: 74 GGFFKR------EGKPSDRETLISRLVDRSIRPLFPTGFCDEIVIVCNLLSYDQVSPPET 127
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
A+ GA AL ++ + + I++ E + ++
Sbjct: 128 VALIGAAAALAISGIPFPTPIAGAKIGYIREEE-----------RYILNPSAEELARSEL 176
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
D + T S +V V+ A + ++ + + A ++ L ++
Sbjct: 177 DMFYSGTKS-SVVMVESEASELS--EEEMLGAVTFGHENCAQVLDLIEE 222
>gi|329767316|ref|ZP_08258841.1| polyribonucleotide nucleotidyltransferase [Gemella haemolysans
M341]
gi|328836005|gb|EGF85696.1| polyribonucleotide nucleotidyltransferase [Gemella haemolysans
M341]
Length = 695
Score = 147 bits (371), Expect = 1e-33, Method: Composition-based stats.
Identities = 47/244 (19%), Positives = 82/244 (33%), Gaps = 18/244 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
+R GR ++R ++ V GS L G T L TL +E++ + ++
Sbjct: 318 IRPDGRALTEIRPLASRVDVLPRTHGSALFTRGQTQSLGVVTLGNLSDEQIIDDLTQEEN 377
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y S G A R+ G RAL V+ I I
Sbjct: 378 KRFMLHYNFPAFSVGEVGFSRAPGRREIGHGALG----ERALAQVIPSKEDFPYTIRIVS 433
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
++++++G + A I +AL ++ + V K + D
Sbjct: 434 EILESNGSSSQATICSGSMALMAAGVPIKAQVAGIAMGLVKKDE---------HYTILTD 484
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T G I +Q + S+ L A+ +++
Sbjct: 485 IQGMEDHLGDMDFKVAGTSEG-ITALQMDIKIDGLSEQILKESLEQARVGRLQILEHMNS 543
Query: 237 VISN 240
+IS
Sbjct: 544 IISE 547
Score = 100 bits (249), Expect = 1e-19, Method: Composition-based stats.
Identities = 43/231 (18%), Positives = 87/231 (37%), Gaps = 26/231 (11%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEK---VPMWIRNTKHGWITAEYGMLPRS 69
+++ +++ A + +VK+GDT +LTTA ++ V + + G +P
Sbjct: 17 LTVELGEMARQANAAVVVKYGDTVVLTTAVASKEAKDVDFFPLTVNYEEKMYAVGKIPGG 76
Query: 70 TGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAA 129
R GR G + R+I R +R + + Q+I ++ D AA
Sbjct: 77 FLRR------EGRPGTEATLAARLIDRPIRPLFEDGFRNEVQVISTVLSVEYDCDPVMAA 130
Query: 130 ITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDA 189
+ G+ + + KG +A ++ G + G +++ + VD
Sbjct: 131 MLGS-------------SLSLSVSNIPFKGPIAGVTVGYVDGEYVINPTVEQMERSTVDL 177
Query: 190 NFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
T I V+ A+ S++ + + I LI Q+ ++
Sbjct: 178 KVAGTID-AINMVEAGAKE--VSEEIMLNAIMFGHEEIKRLIAFQQQIVDE 225
>gi|254994938|ref|ZP_05277128.1| polynucleotide phosphorylase/polyadenylase [Anaplasma marginale
str. Mississippi]
gi|255004198|ref|ZP_05278999.1| polynucleotide phosphorylase/polyadenylase [Anaplasma marginale
str. Virginia]
Length = 805
Score = 147 bits (371), Expect = 1e-33, Method: Composition-based stats.
Identities = 51/243 (20%), Positives = 84/243 (34%), Gaps = 18/243 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +Q+R I + + + GS L GDT L L +E+V +
Sbjct: 320 RVDGRGFDQIRNIEIEVDLIPRSHGSALFTRGDTQALVITALGTPQDEQVVDGFDGDRRE 379
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y + G R+ G + RA+ V+ A I + +
Sbjct: 380 RFLLHYNFPSYAVGEAAALRPPGRREIGHGKL----AWRAIHPVLPTKADFPYTIRVVSE 435
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ ++DG + A + GA +AL D ++ + + +G A+ +
Sbjct: 436 ITESDGSSSMATVCGASLALMDTGVPLKSSVAGIAMGLIKEGDRYAVLSD---------I 486
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T G I +Q + D L AKD +I V
Sbjct: 487 IGDEDYLGDMDFKVAGTKDG-ITALQMDMKIRGIGFDIIEKSLQQAKDGRLFIIGKMDKV 545
Query: 238 ISN 240
I
Sbjct: 546 IKE 548
Score = 72.6 bits (176), Expect = 5e-11, Method: Composition-based stats.
Identities = 36/229 (15%), Positives = 81/229 (35%), Gaps = 24/229 (10%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLE---EKVPMWIRNTKHGWITAEYGMLP 67
R + + +++ A+G+ +V +G T +L+T + E V + + G +P
Sbjct: 14 RLLVIESGKIARQADGAVVVDYGGTSVLSTVVSQKSKEPVDFLPLTVQFLAKSYAIGRIP 73
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R G+ R I R++ R++R + I+ + T
Sbjct: 74 GGFFKR------EGKPSDRETLISRLVDRSIRPLFPTGFCDEIVIVCNLLSYDQVSPPET 127
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
A+ GA AL ++ + + I++ E + ++
Sbjct: 128 VALIGAAAALAISGIPFPTPIAGAKIGYIREEE-----------RYILNPSAEELARSEL 176
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
D + T S +V V+ A + ++ + + A ++ L ++
Sbjct: 177 DMFYSGTKS-SVVMVESEASELS--EEEMLGAVTFGHENCAQVLDLIEE 222
>gi|157962873|ref|YP_001502907.1| polynucleotide phosphorylase/polyadenylase [Shewanella pealeana
ATCC 700345]
gi|257096708|sp|A8H735|PNP_SHEPA RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|157847873|gb|ABV88372.1| Polyribonucleotide nucleotidyltransferase [Shewanella pealeana ATCC
700345]
Length = 704
Score = 147 bits (371), Expect = 1e-33, Method: Composition-based stats.
Identities = 42/240 (17%), Positives = 87/240 (36%), Gaps = 10/240 (4%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R+ GR+ + +R +++ V GS L G+T L T TL + ++ G T
Sbjct: 317 RIDGREPDMVRALNVMAGVLPRTHGSSLFTRGETQALVTCTLGTERDAQKIDSIMGEYTN 376
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
+ + V + G R ++ R + +V+ + + I ++ ++
Sbjct: 377 RFMLHYNFPPYSVGETGMVGSPKRREIGHGKLAWRGINAVMPTAEEFPYSVRIVSEITES 436
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
+G + A++ G +AL D ++ + V +G + + E
Sbjct: 437 NGSSSMASVCGTSLALMDAGVPIKTSVAGIAMGLVKEGDDFVVLSD---------ILGDE 487
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
D D+D T G I +Q + +++ L A ++ + IS
Sbjct: 488 DHLGDMDFKVAGTRDG-ITALQMDIKIEGITKEIMQIALKQAYGARVHILDVMDRAISGH 546
Score = 96.8 bits (239), Expect = 2e-18, Method: Composition-based stats.
Identities = 36/228 (15%), Positives = 76/228 (33%), Gaps = 27/228 (11%)
Query: 14 ISLTRRV-SKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGMLPR 68
++L V ++ A+ + L GDT +L T E + + T G +P
Sbjct: 18 VTLETGVIARQADAAVLASMGDTTVLVTVVGKKFEEPGRDFFPLTVNYQEKTYAAGKIPG 77
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
R GR R+I R +R + Q+II + +
Sbjct: 78 GFFKR------EGRPSEGETLTARLIDRPIRPLFPNGFKNEVQVIITVVSVDPEISPEVI 131
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
++ G A G + + G + G I++ + ++
Sbjct: 132 SMIGTSAA-------------LSISGIPFNGPLGSARVGYVNGEYILNPTVSQLVDSQLE 178
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ T+S ++ V+ +E + ++ + D+ +I+ K+
Sbjct: 179 LSVAGTES-AVLMVE--SEASALPEEVMLGAVVYGHDQQQVVIQAIKE 223
>gi|242047540|ref|XP_002461516.1| hypothetical protein SORBIDRAFT_02g003900 [Sorghum bicolor]
gi|241924893|gb|EER98037.1| hypothetical protein SORBIDRAFT_02g003900 [Sorghum bicolor]
Length = 877
Score = 147 bits (371), Expect = 1e-33, Method: Composition-based stats.
Identities = 46/240 (19%), Positives = 84/240 (35%), Gaps = 13/240 (5%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE-----EKVPMWIRNTKH 56
R GR ++R I+ + A GS L G+T L TL +++ +
Sbjct: 424 RSDGRSPWELRPINSQCGLLPRAHGSALFTRGETQSLAVVTLGGYQMAQRIDNLVDTEDS 483
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
+Y P G + A S R+ G RAL ++ I ++
Sbjct: 484 KSFYLQYSFPPSCVGEVGRIGAPSRREIGHGML----AERALEPILPPEEDFPYTIRVES 539
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+ +++G + A++ G +AL D ++ + VL G + D
Sbjct: 540 TITESNGSSSMASVCGGCLALQDAGVPIKFPVAGIAMGLVLDTQEFG---GDGSPLILSD 596
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED++ D+D +SG I Q + + L A+D ++
Sbjct: 597 ITGAEDASGDMDLKIAGNESG-ISAFQMDIKVVGITLPVMEQALFQARDGRQHILNEMSK 655
Score = 94.1 bits (232), Expect = 1e-17, Method: Composition-based stats.
Identities = 34/225 (15%), Positives = 67/225 (29%), Gaps = 19/225 (8%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRST 70
REI + + + A S +V G+T L + L + E T
Sbjct: 83 REILVETGHIGRQASASVMVTDGETILYCSVCLADTPNDPADFFPLSVHYQERLSAAGRT 142
Query: 71 GNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAI 130
G+ + R+I R LR + QI+ AI
Sbjct: 143 S--GGFFKREGKTKDHEVLVCRLIDRPLRPTMPKGFYYETQILSWVFSYDGIHSPDCLAI 200
Query: 131 TGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDAN 190
T A +A+ K +A + G++ +V+ + ++D
Sbjct: 201 TAAGIAV-------------ALSEIPNKQTIAGVRIGLIDDQFVVNPTTEQMENSELDLM 247
Query: 191 FVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
T I+ ++ +++ + + I ++ K
Sbjct: 248 MAGT-DSAILMIE--GYCDFLTEEKLLEAVEAGQVAIREICKAID 289
>gi|170727889|ref|YP_001761915.1| polynucleotide phosphorylase/polyadenylase [Shewanella woodyi ATCC
51908]
gi|226702688|sp|B1KRQ5|PNP_SHEWM RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|169813236|gb|ACA87820.1| Polyribonucleotide nucleotidyltransferase [Shewanella woodyi ATCC
51908]
Length = 702
Score = 147 bits (371), Expect = 1e-33, Method: Composition-based stats.
Identities = 41/240 (17%), Positives = 87/240 (36%), Gaps = 10/240 (4%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R+ GR+ + +R +++ V GS L G+T L T TL + ++ G T
Sbjct: 314 RIDGREPDMVRALNVMAGVLPRTHGSSLFTRGETQALVTCTLGTERDAQKVDSIMGEYTN 373
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
+ + V + G R ++ R + +V+ + + + ++ ++
Sbjct: 374 RFMLHYNFPPYSVGETGMVGSPKRREIGHGKLAWRGINAVMPTAEEFPYSVRVVSEITES 433
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
+G + A++ G +AL D ++ + V +G + + E
Sbjct: 434 NGSSSMASVCGTSLALMDAGVPIKTSVAGIAMGLVKEGDDFVVLSD---------ILGDE 484
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
D D+D T G I +Q + +++ L A ++ + IS
Sbjct: 485 DHLGDMDFKVAGTRDG-ITALQMDIKIEGITKEIMQIALQQAYGARVHILNVMDQAISGH 543
Score = 99.5 bits (246), Expect = 4e-19, Method: Composition-based stats.
Identities = 37/232 (15%), Positives = 76/232 (32%), Gaps = 27/232 (11%)
Query: 14 ISLTRRV-SKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGMLPR 68
++L V ++ A + L GDT +L T + + + T G +P
Sbjct: 15 VTLETGVIARQANAAVLASMGDTTVLVTVVGKKAEDVGRDFFPLTVNYQEKTYAAGKIPG 74
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
R GR I R+I R +R + Q+II + +
Sbjct: 75 GFFKR------EGRPSENETLIARLIDRPIRPLFPNGFKNEVQVIITVVSVDPEINPDVI 128
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
++ G A G + G G +++ + + + D+D
Sbjct: 129 SMIGTSAA-------------LSISDLPFNGPLGVARVGYTNGEYVLNPNVSQLAESDLD 175
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
T G ++ V+ +E A+ ++ + D+ +I ++ +
Sbjct: 176 LVVAGTQ-GAVLMVE--SEAASLPEEVMLGGVVYGHDQQQVVINAINELTAE 224
>gi|317495525|ref|ZP_07953893.1| polyribonucleotide nucleotidyltransferase [Gemella moribillum M424]
gi|316914339|gb|EFV35817.1| polyribonucleotide nucleotidyltransferase [Gemella moribillum M424]
Length = 695
Score = 147 bits (371), Expect = 1e-33, Method: Composition-based stats.
Identities = 47/244 (19%), Positives = 82/244 (33%), Gaps = 18/244 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
+R GR ++R ++ V GS L G T L TL +E++ + ++
Sbjct: 318 VRPDGRALTEIRPLASRIDVLPRTHGSALFTRGQTQSLGVVTLGNLSDEQIIDDLTQEEN 377
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y S G A R+ G RAL V+ I I
Sbjct: 378 KRFMLHYNFPAFSVGEVGFSRAPGRREIGHGALG----ERALAQVIPSKEDFPYTIRIVS 433
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
++++++G + A I +AL ++ + V K + D
Sbjct: 434 EILESNGSSSQATICSGSMALMAAGVPIKAQVAGIAMGLVKKDE---------HYTILTD 484
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T G I +Q + S+ L A+ ++ +
Sbjct: 485 IQGMEDHLGDMDFKVAGTSEG-ITALQMDIKIEGLSEQILKESLEQARVGRLQILDHMNN 543
Query: 237 VISN 240
+IS
Sbjct: 544 IISE 547
Score = 105 bits (262), Expect = 5e-21, Method: Composition-based stats.
Identities = 45/232 (19%), Positives = 90/232 (38%), Gaps = 26/232 (11%)
Query: 13 EISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEK---VPMWIRNTKHGWITAEYGMLPR 68
E+++ +++ A + +VK+GDT +LTTA ++ V + + G +P
Sbjct: 16 ELTVELGEMARQANAAVVVKYGDTVVLTTAVASKEAKDVDFFPLTVNYEEKMYAVGKIPG 75
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
R GR G + R+I R +R + + Q+I ++ D A
Sbjct: 76 GFLRR------EGRPGTEATLAARLIDRPIRPLFEDGFRNEVQVISTVLSVEYDCDPVMA 129
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+ G+ +A + KG +A ++ G + G +++ + + +D
Sbjct: 130 AMLGSSLA-------------LSVSNIPFKGPIAGVTVGYVDGEYVINPNVEQFEKSKID 176
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
T I V+ AE S++ + + I LI Q+ ++
Sbjct: 177 LKVAGTKD-AINMVEAGAEE--VSEEVMLNAIMFGHEEIKRLIAFQQQIVDE 225
>gi|329943105|ref|ZP_08291879.1| S1 RNA binding domain protein [Chlamydophila psittaci Cal10]
gi|332287687|ref|YP_004422588.1| polyribonucleotide nucleotidyltransferase [Chlamydophila psittaci
6BC]
gi|313848261|emb|CBY17262.1| polyribonucleotide nucleotidyltransferase [Chlamydophila psittaci
RD1]
gi|325507208|gb|ADZ18846.1| polyribonucleotide nucleotidyltransferase [Chlamydophila psittaci
6BC]
gi|328814652|gb|EGF84642.1| S1 RNA binding domain protein [Chlamydophila psittaci Cal10]
gi|328914940|gb|AEB55773.1| polyribonucleotide nucleotidyltransferase [Chlamydophila psittaci
6BC]
Length = 694
Score = 147 bits (371), Expect = 1e-33, Method: Composition-based stats.
Identities = 46/243 (18%), Positives = 82/243 (33%), Gaps = 18/243 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKH 56
+R GR +R IS+ GSCL G+T + TL + +
Sbjct: 313 IRSDGRSITTIRPISIETSFLPRTHGSCLFTRGETQTMAVCTLGSEAMAQRYEDLNGEGL 372
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
+Y P S G + + R+ G + +AL + I I+
Sbjct: 373 AKFYLQYFFPPFSVGEVGRIGSPGRREIGHGKL----AEKALSHTLPDPVKFPYTIRIES 428
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+ +++G + A++ G +AL D ++ + +L I
Sbjct: 429 SITESNGSSSMASVCGGCLALMDAGVPIKTPIAGIAMGLILDDDHVTILSD--------- 479
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D G I Q + + A L AKD D+++ K
Sbjct: 480 ISGLEDHLGDMDFKVAGNTEG-ITAFQMDIKVEGITPAIMRAALAQAKDGRQDILETMKQ 538
Query: 237 VIS 239
++
Sbjct: 539 ALA 541
Score = 94.1 bits (232), Expect = 1e-17, Method: Composition-based stats.
Identities = 36/234 (15%), Positives = 71/234 (30%), Gaps = 26/234 (11%)
Query: 7 QENQMREISLTRR-VSKYAEGSCLVKFGDTHL---LTTATLEEKVPMWIRNTKHGWITAE 62
+ + + +++ A G+ L + +T + + A LEE V + +
Sbjct: 9 TLEEGKTLVFETGKIARQANGAVLARMQETWVFSSVCAANLEEAVDFLPLRVDYQEKFSS 68
Query: 63 YGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQAD 122
G R GR R R+I R++R + + QI+
Sbjct: 69 IGKTLGGFIKR------EGRPTEREILTSRLIDRSMRPSLPNRLMQDVQILSYVWSYDGV 122
Query: 123 GGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGED 182
AI G A VA + G + +V+ E
Sbjct: 123 TLPDPIAICGVSAA-------------LAISDIPQTSIVAGVRVGFVNNRWVVNPTKAEM 169
Query: 183 STIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
++ T++ I+ ++ F+++ + I + K KD
Sbjct: 170 DVSRMELVLAGTEN-AILMIE--GHCDFFTEEQVIEAIEFGHKHIVTICKALKD 220
>gi|29347973|ref|NP_811476.1| polynucleotide phosphorylase/polyadenylase [Bacteroides
thetaiotaomicron VPI-5482]
gi|253572562|ref|ZP_04849964.1| polyribonucleotide nucleotidyltransferase [Bacteroides sp. 1_1_6]
gi|81444021|sp|Q8A4N6|PNP_BACTN RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|29339875|gb|AAO77670.1| polyribonucleotide nucleotidyltransferase [Bacteroides
thetaiotaomicron VPI-5482]
gi|251837977|gb|EES66066.1| polyribonucleotide nucleotidyltransferase [Bacteroides sp. 1_1_6]
Length = 708
Score = 147 bits (371), Expect = 1e-33, Method: Composition-based stats.
Identities = 48/243 (19%), Positives = 87/243 (35%), Gaps = 18/243 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHG 57
RL GR+ ++R I GS + G+T LT+ T L+EK+ +
Sbjct: 319 RLDGRKTTEIRPIWCEVGPLPGPHGSAIFTRGETQSLTSVTLGTKLDEKIIDNVLEHGKE 378
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P STG + V R+ G RAL+ + + + +
Sbjct: 379 RFLLHYNFPPFSTGEAKAQRGVGRREIGHGHL----AWRALKGQIPADY--PYVVRVVSE 432
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+++++G + A + +AL D ++ + + + G + D+
Sbjct: 433 ILESNGSSSMATVCAGTLALMDAGVKIKKPVSGIAMGLIKN-------PGEEKYAVLSDI 485
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T G I Q + S + LN AK+ ++ +
Sbjct: 486 LGDEDHLGDMDFKVTGTRDG-ITATQMDIKVDGLSYEILERALNQAKEGRMHILDKITET 544
Query: 238 ISN 240
I+
Sbjct: 545 IAE 547
Score = 106 bits (265), Expect = 2e-21, Method: Composition-based stats.
Identities = 39/241 (16%), Positives = 76/241 (31%), Gaps = 26/241 (10%)
Query: 3 LSGRQENQMREISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
GR I+L ++K A+GS +++ G+T LL T +
Sbjct: 12 PDGRT------ITLETGKLAKQADGSVMLRMGNTMLLATVCAAKDAVPGTDFMPLQVEYK 65
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
E GR R++ RALR + +
Sbjct: 66 EKFAAFGRFP--GGFTKREGRASDYEILTCRLVDRALRPLFPDNYHAEVY---------- 113
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
+ V + D L + + G ++ + + G +++ + +
Sbjct: 114 ---VNIILFSADGVDMPDALAGLAASAALAVSDIPFNGPISEVRVARIDGQFVINPTFDQ 170
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
D+D T +I+ V+ E S+ + +A + I K Q + ++ E
Sbjct: 171 LEKADMDLMVAATYD-NIMMVE--GEMHEVSEAELLEAMKVAHEAIKVHCKAQME-LTEE 226
Query: 242 V 242
V
Sbjct: 227 V 227
>gi|296085901|emb|CBI31225.3| unnamed protein product [Vitis vinifera]
Length = 942
Score = 147 bits (370), Expect = 1e-33, Method: Composition-based stats.
Identities = 47/241 (19%), Positives = 85/241 (35%), Gaps = 13/241 (5%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEE-----KVPMWIRNTKH 56
R GR + +R I+ + A GS L G+T L TL + ++ + +
Sbjct: 437 RSDGRTPDGIRLINSQCGLLPRAHGSALFTRGETQSLAVVTLGDRQMAQRIDNLVDVDEL 496
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
+Y P G + A S R+ G RAL ++ I ++
Sbjct: 497 KRFYLQYSFPPSCVGEVGRMGAPSRREIGHGML----AERALEPILPSEDDFPYTIRVES 552
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+ +++G + A++ G +AL D ++ + VL G + D
Sbjct: 553 TITESNGSSSMASVCGGCLALQDAGVPVKYSIAGIAMGMVLNTEEFG---GDGTPLILSD 609
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED++ D+D T+ G I Q + + L AKD ++
Sbjct: 610 ITGSEDASGDMDFKVAGTEDG-ITAFQMDIKVGGITLPIMKQALLQAKDGRKQILAEMSK 668
Query: 237 V 237
Sbjct: 669 C 669
Score = 88.7 bits (218), Expect = 6e-16, Method: Composition-based stats.
Identities = 36/231 (15%), Positives = 71/231 (30%), Gaps = 20/231 (8%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRST 70
R I + + + A GS V G+T + T+ L + E T
Sbjct: 87 RHILVETGHIGRQASGSVTVTDGETIVYTSVCLADVPSEPSDFFPLSVNYQERFSAAGRT 146
Query: 71 GNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAI 130
GR I R+I R LR + QI+ + A+
Sbjct: 147 S--GGFFKREGRTKDHEVLICRLIDRPLRPTMLKGFYHETQILSWVLSYDGLHSPDSLAV 204
Query: 131 TGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDAN 190
T A +A+ + VA + GM+ I++ E ++D
Sbjct: 205 TAAGIAV-------------ALSELPISKAVAGVRVGMVGNKFIINPTTKEMEDSELDLL 251
Query: 191 FVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
T I+ ++ ++ + + +D + + + ++ +
Sbjct: 252 VAGT-DSAILMIE--GYCNFLPEEKLLQAVEVGQDAVRAICNEV-EALAKK 298
>gi|188532508|ref|YP_001906305.1| polynucleotide phosphorylase/polyadenylase [Erwinia tasmaniensis
Et1/99]
gi|226702651|sp|B2VGN7|PNP_ERWT9 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|188027550|emb|CAO95397.1| Polyribonucleotide nucleotidyltransferase [Erwinia tasmaniensis
Et1/99]
Length = 710
Score = 147 bits (370), Expect = 1e-33, Method: Composition-based stats.
Identities = 44/242 (18%), Positives = 90/242 (37%), Gaps = 18/242 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR+++ +R + + V GS L G+T L TATL + + + +
Sbjct: 315 RIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQNLDELMGERTD 374
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + R+ G + R + +V+ + + +
Sbjct: 375 NFLFHYNFPPYSVGETGMVGSPKRREIGHGRL----AKRGVLAVMPKGDAFPYTVRVVSE 430
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ GA +AL D ++ + V + + +
Sbjct: 431 ITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKDENNFVVLSD---------I 481
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D + G I +Q + +++ LN AK ++ + +
Sbjct: 482 LGDEDHLGDMDFKVAGSREG-ITALQMDIKIEGITREIMQVALNQAKGARLHILGVMEQA 540
Query: 238 IS 239
IS
Sbjct: 541 IS 542
Score = 94.5 bits (233), Expect = 1e-17, Method: Composition-based stats.
Identities = 39/232 (16%), Positives = 74/232 (31%), Gaps = 27/232 (11%)
Query: 14 ISLTRRV-SKYAEGSCLVKFGDTHLLTTATLEEKVPM----WIRNTKHGWITAEYGMLPR 68
++L + ++ A + +V DT + T ++K + + T G +P
Sbjct: 16 VTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQGFFPLTVNYQERTYAAGRIPG 75
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
S R GR R+I R +R + + Q+I +
Sbjct: 76 SFFRR------EGRPSEGETLTSRLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVNPDIV 129
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+ GA A G + A G L +++ E +D
Sbjct: 130 AMIGASAA-------------LALSGLPFNGPIGAARVGYLNDQYVLNPTSDELKESKLD 176
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
T G ++ V+ AE S+D + D+ +I +++
Sbjct: 177 LVVAGTK-GAVLMVESEAEL--LSEDQMLGAVVFGHDQQQIVIDNINALVAE 225
>gi|225439207|ref|XP_002270169.1| PREDICTED: hypothetical protein [Vitis vinifera]
Length = 946
Score = 147 bits (370), Expect = 1e-33, Method: Composition-based stats.
Identities = 47/241 (19%), Positives = 85/241 (35%), Gaps = 13/241 (5%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEE-----KVPMWIRNTKH 56
R GR + +R I+ + A GS L G+T L TL + ++ + +
Sbjct: 437 RSDGRTPDGIRLINSQCGLLPRAHGSALFTRGETQSLAVVTLGDRQMAQRIDNLVDVDEL 496
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
+Y P G + A S R+ G RAL ++ I ++
Sbjct: 497 KRFYLQYSFPPSCVGEVGRMGAPSRREIGHGML----AERALEPILPSEDDFPYTIRVES 552
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+ +++G + A++ G +AL D ++ + VL G + D
Sbjct: 553 TITESNGSSSMASVCGGCLALQDAGVPVKYSIAGIAMGMVLNTEEFG---GDGTPLILSD 609
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED++ D+D T+ G I Q + + L AKD ++
Sbjct: 610 ITGSEDASGDMDFKVAGTEDG-ITAFQMDIKVGGITLPIMKQALLQAKDGRKQILAEMSK 668
Query: 237 V 237
Sbjct: 669 C 669
Score = 88.7 bits (218), Expect = 6e-16, Method: Composition-based stats.
Identities = 36/231 (15%), Positives = 71/231 (30%), Gaps = 20/231 (8%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRST 70
R I + + + A GS V G+T + T+ L + E T
Sbjct: 87 RHILVETGHIGRQASGSVTVTDGETIVYTSVCLADVPSEPSDFFPLSVNYQERFSAAGRT 146
Query: 71 GNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAI 130
GR I R+I R LR + QI+ + A+
Sbjct: 147 S--GGFFKREGRTKDHEVLICRLIDRPLRPTMLKGFYHETQILSWVLSYDGLHSPDSLAV 204
Query: 131 TGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDAN 190
T A +A+ + VA + GM+ I++ E ++D
Sbjct: 205 TAAGIAV-------------ALSELPISKAVAGVRVGMVGNKFIINPTTKEMEDSELDLL 251
Query: 191 FVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
T I+ ++ ++ + + +D + + + ++ +
Sbjct: 252 VAGT-DSAILMIE--GYCNFLPEEKLLQAVEVGQDAVRAICNEV-EALAKK 298
>gi|293373410|ref|ZP_06619765.1| polyribonucleotide nucleotidyltransferase [Bacteroides ovatus SD
CMC 3f]
gi|298482234|ref|ZP_07000421.1| polyribonucleotide nucleotidyltransferase [Bacteroides sp. D22]
gi|292631548|gb|EFF50171.1| polyribonucleotide nucleotidyltransferase [Bacteroides ovatus SD
CMC 3f]
gi|295085266|emb|CBK66789.1| polyribonucleotide nucleotidyltransferase [Bacteroides
xylanisolvens XB1A]
gi|298271521|gb|EFI13095.1| polyribonucleotide nucleotidyltransferase [Bacteroides sp. D22]
Length = 708
Score = 147 bits (370), Expect = 1e-33, Method: Composition-based stats.
Identities = 50/243 (20%), Positives = 87/243 (35%), Gaps = 18/243 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHG 57
RL GR+ ++R I GS + G+T LT+ T L+EK+ +
Sbjct: 319 RLDGRKTTEIRPIWCEVGPLPGPHGSAIFTRGETQSLTSVTLGTKLDEKIIDDVLEHGKE 378
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P STG + V R+ G RAL+ + + + D
Sbjct: 379 RFLLHYNFPPFSTGEAKAQRGVGRREIGHGHL----AWRALKGQIPADY--PYVVRVVSD 432
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+++++G + A + +AL D ++ + + + G + D+
Sbjct: 433 ILESNGSSSMATVCAGTLALMDAGVKIKKPVSGIAMGLIKN-------PGEEKYAVLSDI 485
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T G I Q + S D LN AK+ ++ +
Sbjct: 486 LGDEDHLGDMDFKVTGTKDG-ITATQMDIKVDGLSYDILERALNQAKEGRMHILNKITET 544
Query: 238 ISN 240
I+
Sbjct: 545 IAE 547
Score = 105 bits (262), Expect = 5e-21, Method: Composition-based stats.
Identities = 39/241 (16%), Positives = 76/241 (31%), Gaps = 26/241 (10%)
Query: 3 LSGRQENQMREISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
GR I+L ++K A+GS +++ G+T LL T +
Sbjct: 12 PDGRT------ITLETGKLAKQADGSVMLRMGNTMLLATVCAAKDAVPGTDFMPLQVEYK 65
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
E GR R++ RALR + +
Sbjct: 66 EKFAAFGRFP--GGFTKREGRASDYEILTCRLVDRALRPLFPDNYHAEVY---------- 113
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
+ V + D L + + G ++ + + G +++ + +
Sbjct: 114 ---VNIILFSADGVDMPDALAGLAASAALAVSDIPFNGPISEVRVARIDGQFVINPTFEQ 170
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
D+D T +I+ V+ E S+ + +A + I K Q + ++ E
Sbjct: 171 LEKADMDLMVAATYE-NIMMVE--GEMHEVSEAELLEAMKVAHEAIKIHCKAQME-LTEE 226
Query: 242 V 242
V
Sbjct: 227 V 227
>gi|238760238|ref|ZP_04621383.1| hypothetical protein yaldo0001_39430 [Yersinia aldovae ATCC 35236]
gi|238701561|gb|EEP94133.1| hypothetical protein yaldo0001_39430 [Yersinia aldovae ATCC 35236]
Length = 706
Score = 147 bits (370), Expect = 1e-33, Method: Composition-based stats.
Identities = 45/242 (18%), Positives = 90/242 (37%), Gaps = 18/242 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR+++ +R + + V GS L G+T L TATL + + + +
Sbjct: 315 RIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQNIDELMGERTD 374
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P G + R+ G + R + +V+ + I + +
Sbjct: 375 SFLLHYNFPPYCVGETGMVGSPKRREIGHGRL----AKRGVLAVMPSPSEFPYTIRVVSE 430
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ GA +AL D ++ + V K + +
Sbjct: 431 ITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKKDDNFVVLSD---------I 481
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D + G I +Q + +++ LN AK ++ + +
Sbjct: 482 LGDEDHLGDMDFKVAGSRDG-ITALQMDIKIEGITREIMQVALNQAKGARLHILGVMEQA 540
Query: 238 IS 239
IS
Sbjct: 541 IS 542
Score = 89.5 bits (220), Expect = 3e-16, Method: Composition-based stats.
Identities = 36/232 (15%), Positives = 76/232 (32%), Gaps = 27/232 (11%)
Query: 14 ISLTRRV-SKYAEGSCLVKFGDTHLLTTATLEEKVPM----WIRNTKHGWITAEYGMLPR 68
+++ + ++ A + +V DT + T ++K + + T G +P
Sbjct: 16 VTIETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQSFFPLTVNYQERTYAAGRIPG 75
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
S R GR R+I R +R + S L Q+I +
Sbjct: 76 SFFRR------EGRPSEGETLTSRLIDRPIRPLFPDSFLNEVQVIATVVSVNPQINPDIV 129
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+ GA A G + A G + +++ E +D
Sbjct: 130 ALIGASAA-------------LSLSGIPFNGPIGAARVGFINDQYVLNPTTDELKESRLD 176
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
T + ++ V+ A+ S+D + ++ +I+ +++
Sbjct: 177 LVVAGTAA-AVLMVESEAQI--LSEDQMLGAVVFGHEQQQIVIENINALVAQ 225
>gi|237823993|pdb|3H1C|A Chain A, Crystal Structure Of Polynucleotide Phosphorylase (Pnpase)
Core Bound To Rnase E And Tungstate
gi|237823995|pdb|3H1C|B Chain B, Crystal Structure Of Polynucleotide Phosphorylase (Pnpase)
Core Bound To Rnase E And Tungstate
gi|237823997|pdb|3H1C|C Chain C, Crystal Structure Of Polynucleotide Phosphorylase (Pnpase)
Core Bound To Rnase E And Tungstate
gi|237823999|pdb|3H1C|G Chain G, Crystal Structure Of Polynucleotide Phosphorylase (Pnpase)
Core Bound To Rnase E And Tungstate
gi|237824001|pdb|3H1C|I Chain I, Crystal Structure Of Polynucleotide Phosphorylase (Pnpase)
Core Bound To Rnase E And Tungstate
gi|237824003|pdb|3H1C|K Chain K, Crystal Structure Of Polynucleotide Phosphorylase (Pnpase)
Core Bound To Rnase E And Tungstate
gi|237824005|pdb|3H1C|M Chain M, Crystal Structure Of Polynucleotide Phosphorylase (Pnpase)
Core Bound To Rnase E And Tungstate
gi|237824007|pdb|3H1C|O Chain O, Crystal Structure Of Polynucleotide Phosphorylase (Pnpase)
Core Bound To Rnase E And Tungstate
gi|237824009|pdb|3H1C|R Chain R, Crystal Structure Of Polynucleotide Phosphorylase (Pnpase)
Core Bound To Rnase E And Tungstate
gi|237824011|pdb|3H1C|T Chain T, Crystal Structure Of Polynucleotide Phosphorylase (Pnpase)
Core Bound To Rnase E And Tungstate
gi|237824013|pdb|3H1C|V Chain V, Crystal Structure Of Polynucleotide Phosphorylase (Pnpase)
Core Bound To Rnase E And Tungstate
gi|237824015|pdb|3H1C|X Chain X, Crystal Structure Of Polynucleotide Phosphorylase (Pnpase)
Core Bound To Rnase E And Tungstate
Length = 549
Score = 147 bits (370), Expect = 1e-33, Method: Composition-based stats.
Identities = 45/242 (18%), Positives = 92/242 (38%), Gaps = 18/242 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR+++ +R + + V GS L G+T L TATL + +V + +
Sbjct: 315 RIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVLDELMGERTD 374
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + R+ G + R + +V+ + + +
Sbjct: 375 TFLFHYNFPPYSVGETGMVGSPKRREIGHGRL----AKRGVLAVMPDMDKFPYTVRVVSE 430
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ GA +AL D ++ + V +G + +
Sbjct: 431 ITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLSD---------I 481
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D + G I +Q + +++ LN AK ++ + +
Sbjct: 482 LGDEDHLGDMDFKVAGSRDG-ISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQA 540
Query: 238 IS 239
I+
Sbjct: 541 IN 542
Score = 95.3 bits (235), Expect = 6e-18, Method: Composition-based stats.
Identities = 36/232 (15%), Positives = 76/232 (32%), Gaps = 27/232 (11%)
Query: 14 ISLTRRV-SKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----HGWITAEYGMLPR 68
++L + ++ A + +V DT + T ++K + T G +P
Sbjct: 16 VTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVNYQERTYAAGRIPG 75
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
S R GR I R+I R +R + + Q+I +
Sbjct: 76 SFFRR------EGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVNPDIV 129
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+ GA A G + A G + +++ E +D
Sbjct: 130 AMIGASAA-------------LSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLD 176
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
T++ ++ V+ +E S+D + ++ +I+ +++
Sbjct: 177 LVVAGTEA-AVLMVE--SEAQLLSEDQMLGAVVFGHEQQQVVIQNINELVKE 225
>gi|313149393|ref|ZP_07811586.1| polyribonucleotide nucleotidyltransferase [Bacteroides fragilis
3_1_12]
gi|313138160|gb|EFR55520.1| polyribonucleotide nucleotidyltransferase [Bacteroides fragilis
3_1_12]
Length = 711
Score = 147 bits (370), Expect = 1e-33, Method: Composition-based stats.
Identities = 49/243 (20%), Positives = 89/243 (36%), Gaps = 18/243 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHG 57
RL GR+ ++R I GS + G+T LT+ T L+EK+ +
Sbjct: 382 RLDGRKTTEIRPIWCEVGYLPGPHGSAIFTRGETQSLTSVTLGTKLDEKIIDDVLAHGKE 441
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P STG + V R+ G RAL+ ++ + + D
Sbjct: 442 RFLLHYNFPPFSTGEAKAQRGVGRREIGHGNL----AHRALKKMIPEDY--PYVVRVVSD 495
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+++++G + A + +AL D ++ + + + G + D+
Sbjct: 496 ILESNGSSSMATVCAGTLALMDAGVKIKKPVSGIAMGLIKN-------AGEEKYAVLSDI 548
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T G I Q + S + LN AK+ ++ ++
Sbjct: 549 LGDEDHLGDMDFKVTGTKDG-ITATQMDIKVDGLSYEILERALNQAKEGRMHILGKIQET 607
Query: 238 ISN 240
I+
Sbjct: 608 IAE 610
Score = 103 bits (256), Expect = 2e-20, Method: Composition-based stats.
Identities = 36/230 (15%), Positives = 72/230 (31%), Gaps = 19/230 (8%)
Query: 8 ENQMREISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGML 66
R I+L ++K A+GS +++ G+T LL T + E
Sbjct: 74 LGDGRTITLETGKLAKQADGSVMLRMGNTMLLATVCAAKDAVPGTDFMPLQVEYKEKFAA 133
Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
GR R++ RALR + +
Sbjct: 134 FGRFP--GGFTKREGRASDYEILTCRLVDRALRPLFPDNFHAEVY-------------VN 178
Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
+ V + D L + + G ++ + + G +++ + + D
Sbjct: 179 IILFSADGVDMPDALAGLAASAALAVSDIPFNGPISEVRVARIDGKFVINPTFDQLEKAD 238
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+D T +I+ V+ E + S+ + +A + I K Q +
Sbjct: 239 MDIMVAATYE-NIMMVE--GEMSEVSEAELLEAMKVAHEAIKVHCKAQME 285
>gi|239781891|pdb|3GCM|A Chain A, Crystal Structure Of E. Coli Polynucleotide Phosphorylase
Bound To Rna And Rnase E
gi|239781893|pdb|3GCM|B Chain B, Crystal Structure Of E. Coli Polynucleotide Phosphorylase
Bound To Rna And Rnase E
gi|239781895|pdb|3GCM|C Chain C, Crystal Structure Of E. Coli Polynucleotide Phosphorylase
Bound To Rna And Rnase E
gi|239781908|pdb|3GLL|A Chain A, Crystal Structure Of Polynucleotide Phosphorylase (Pnpase)
Core
gi|239781910|pdb|3GME|A Chain A, Crystal Structure Of Polynucleotide Phosphorylase In
Complex With Rnase E And Manganese
Length = 549
Score = 147 bits (370), Expect = 1e-33, Method: Composition-based stats.
Identities = 45/242 (18%), Positives = 92/242 (38%), Gaps = 18/242 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR+++ +R + + V GS L G+T L TATL + +V + +
Sbjct: 315 RIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVLDELMGERTD 374
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + R+ G + R + +V+ + + +
Sbjct: 375 TFLFHYNFPPYSVGETGMVGSPKRREIGHGRL----AKRGVLAVMPDMDKFPYTVRVVSE 430
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ GA +AL D ++ + V +G + +
Sbjct: 431 ITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLSD---------I 481
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D + G I +Q + +++ LN AK ++ + +
Sbjct: 482 LGDEDHLGDMDFKVAGSRDG-ISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQA 540
Query: 238 IS 239
I+
Sbjct: 541 IN 542
Score = 96.8 bits (239), Expect = 2e-18, Method: Composition-based stats.
Identities = 37/232 (15%), Positives = 76/232 (32%), Gaps = 27/232 (11%)
Query: 14 ISLTRRV-SKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----HGWITAEYGMLPR 68
++L + ++ A + +V DT + T ++K + T G +P
Sbjct: 16 VTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVNYQERTYAAGRIPG 75
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
S R GR I R+I R +R + + Q+I +
Sbjct: 76 SFFRR------EGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVNPDIV 129
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+ GA A G + A G + +++ E +D
Sbjct: 130 AMIGASAA-------------LSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLD 176
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
T++ ++ V+ AE S+D + ++ +I+ +++
Sbjct: 177 LVVAGTEA-AVLMVESEAEL--LSEDQMLGAVVFGHEQQQVVIQNINELVKE 225
>gi|212634079|ref|YP_002310604.1| polynucleotide phosphorylase/polyadenylase [Shewanella
piezotolerans WP3]
gi|226702687|sp|B8CKH8|PNP_SHEPW RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|212555563|gb|ACJ28017.1| Polyribonucleotide nucleotidyltransferase [Shewanella piezotolerans
WP3]
Length = 701
Score = 147 bits (370), Expect = 1e-33, Method: Composition-based stats.
Identities = 41/240 (17%), Positives = 86/240 (35%), Gaps = 10/240 (4%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R+ GR+ + +R +++ V GS L G+T L T TL + ++ G T
Sbjct: 314 RIDGREPDMVRALNVMAGVLPRTHGSSLFTRGETQALVTCTLGTERDAQKVDSIMGEYTN 373
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
+ + V G R ++ R + +V+ + + + ++ ++
Sbjct: 374 RFMLHYNFPPYSVGETGFVGSPKRREIGHGKLAWRGINAVMPSAEEFPYSVRVVSEITES 433
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
+G + A++ G +AL D ++ + V +G + + E
Sbjct: 434 NGSSSMASVCGTSLALMDAGVPIKTSVAGIAMGLVKEGDDFVVLSD---------ILGDE 484
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
D D+D T G I +Q + ++D L A ++ + I +
Sbjct: 485 DHLGDMDFKVAGTRDG-ITALQMDIKIEGITKDIMQIALQQAYGARVHILNVMDQAIGSH 543
Score = 98.8 bits (244), Expect = 6e-19, Method: Composition-based stats.
Identities = 37/228 (16%), Positives = 75/228 (32%), Gaps = 27/228 (11%)
Query: 14 ISLTRRV-SKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGMLPR 68
++L V ++ A+ + L GDT +L T E + + T G +P
Sbjct: 15 VTLETGVIARQADAAVLASMGDTTVLVTVVGKKAEEPGRDFFPLTVNYQEKTYAAGKIPG 74
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
R GR I R+I R +R + Q+II + +
Sbjct: 75 GFFKR------EGRPSESETLIARLIDRPIRPLFPNGFKNEVQVIITVVSVDPEINPDII 128
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
++ G A G + G G +++ D + ++D
Sbjct: 129 SMIGTSAA-------------LAISGLPFNGPLGVARVGYTNGEYVLNPDVTQLVDSELD 175
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
T+ G ++ V+ +E A+ ++ + ++ +I +
Sbjct: 176 LVVAGTE-GAVLMVE--SEAASLPEEVMLGGVVYGHEQQQVVINAISE 220
>gi|257887903|ref|ZP_05667556.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
1,141,733]
gi|257893296|ref|ZP_05672949.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
1,231,408]
gi|257896479|ref|ZP_05676132.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
Com12]
gi|257899445|ref|ZP_05679098.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
Com15]
gi|257823957|gb|EEV50889.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
1,141,733]
gi|257829675|gb|EEV56282.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
1,231,408]
gi|257833044|gb|EEV59465.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
Com12]
gi|257837357|gb|EEV62431.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
Com15]
Length = 708
Score = 147 bits (370), Expect = 1e-33, Method: Composition-based stats.
Identities = 45/243 (18%), Positives = 85/243 (34%), Gaps = 18/243 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56
+R GR+ +++R +S + GS L G T L+ T E ++ +
Sbjct: 318 IRPDGRKLDEIRPLSSEVSLLPRVHGSGLFTRGQTQALSACTLAPLGEHQIIDGLGVEVS 377
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y S G+ + + R+ G RAL V+ I +
Sbjct: 378 KRFIHHYNFPQFSVGSTGRAGSPGRREIGHGALG----ERALAQVIPSEEEFPYTIRLVA 433
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V++++G + A+I +AL D ++ + V G + D
Sbjct: 434 EVLESNGSSSQASICAGTLALMDAGVPIKAPVAGIAMGLVSDGE---------NYTILTD 484
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T G I +Q + ++ L AK ++++
Sbjct: 485 IQGLEDHLGDMDFKVAGTKDG-ITALQMDIKIQGITEQILTEALTQAKQARMEILEELTS 543
Query: 237 VIS 239
I+
Sbjct: 544 TIA 546
Score = 113 bits (282), Expect = 3e-23, Method: Composition-based stats.
Identities = 41/231 (17%), Positives = 84/231 (36%), Gaps = 26/231 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEK---VPMWIRNTKHGWITAEYGMLP 67
R + + ++K A G+ LV++GDT +L+ A ++ + + G +P
Sbjct: 14 RPLQIEVGQLAKQANGAVLVRYGDTVVLSAAVASKEAKDTDFFPLTINYEEKMYAAGKIP 73
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R GR + R+I R +R + Q+ ++ D
Sbjct: 74 GGFIKR------EGRPSTEATLTARLIDRPIRPMFAEGFRNEVQVTNIVMSVETDCSPAM 127
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
AA+ G+ +A G +A + G + G +++ + D+
Sbjct: 128 AAMLGSSLA-------------LSISDIPFDGPIAGVEVGRVNGEYVLNPTVEQAEQTDI 174
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
+ T I V+ A+ S++ L D I +L+ Q++++
Sbjct: 175 ELTVAGTKQ-AINMVESGAKE--VSEEDMLGALLFGFDAIKELVAFQEEIV 222
>gi|312898454|ref|ZP_07757844.1| polyribonucleotide nucleotidyltransferase [Megasphaera
micronuciformis F0359]
gi|310620373|gb|EFQ03943.1| polyribonucleotide nucleotidyltransferase [Megasphaera
micronuciformis F0359]
Length = 717
Score = 147 bits (370), Expect = 1e-33, Method: Composition-based stats.
Identities = 46/242 (19%), Positives = 88/242 (36%), Gaps = 18/242 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
+R GR+ N++R +S + K G+ L G T +L+ ATL E + +
Sbjct: 312 IRPDGRKVNEVRPVSCEVGLFKRTHGTGLFTRGQTQILSFATLAPLSEAQHIDGVGTETE 371
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y S G R+ G + RAL V+ I +
Sbjct: 372 RRYMHHYNFPSFSVGETRSSRGPGRREIGHGKL----AERALTQVMPSEEEFPYAIRVVS 427
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V++++G + ++ G+ +AL D ++ + + V K + D
Sbjct: 428 EVLESNGSSSMGSVCGSTLALMDAGVPIKAPVSGVAMGLVTKDDD---------FTILTD 478
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED+ D+D T G + +Q + S++ L A + ++
Sbjct: 479 IQGMEDALGDMDFKVAGTTKG-VTAIQMDIKIKGLSREILDTALKQAHEGRLHIMDKMLA 537
Query: 237 VI 238
V+
Sbjct: 538 VL 539
Score = 102 bits (255), Expect = 3e-20, Method: Composition-based stats.
Identities = 42/234 (17%), Positives = 83/234 (35%), Gaps = 27/234 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKHGWITAEYGML 66
R +++ ++K + G+ LV++GDT + +AT E + + G +
Sbjct: 13 RPLTVEVGKLAKQSSGAALVRYGDTAVFVSATGSKEAREDADFFPLTVDYEEKMYAVGKI 72
Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
P R G+ + R+I R +R + + ++ + D
Sbjct: 73 PGGFIKR------EGKPPESATLFARLIDRPIRPLFPKTYRHDVHVVAYDFAVDHDNAPE 126
Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
AA+ GA VAL G +A + G + G I++ + D
Sbjct: 127 IAAMIGASVALCM-------------SHIPFAGPIAGVRVGRIDGNFIINPTVEQSEKSD 173
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
+D T I+ V+G A+ + + A + I +++ Q +
Sbjct: 174 MDIVVAGTKD-AILMVEGGAKEVP--ESDILDAIMFAHEEIRKVVEFQLSFLDE 224
>gi|284047833|ref|YP_003398172.1| polyribonucleotide nucleotidyltransferase [Acidaminococcus
fermentans DSM 20731]
gi|283952054|gb|ADB46857.1| polyribonucleotide nucleotidyltransferase [Acidaminococcus
fermentans DSM 20731]
Length = 690
Score = 147 bits (370), Expect = 1e-33, Method: Composition-based stats.
Identities = 46/244 (18%), Positives = 85/244 (34%), Gaps = 18/244 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLL-TTATLEEKVPMWIR---NTKH 56
+R GR +++R IS + G L G T +L A + +
Sbjct: 310 IRPDGRALDEVRPISCEVGLLARPHGCSLFTRGQTQVLNCLALAPLREAQNLETLAGDIQ 369
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P S G + R+ G RAL V+ I +
Sbjct: 370 KRYIHHYNFPPYSVGETKPLRSPGRREIGHGAL----AERALLPVIPSEEEFPYTIRLVS 425
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V++++G + A+ + ++L D ++ + + V +G + D
Sbjct: 426 EVLESNGSSSMASTCASTLSLMDAGVPIKAPVSGVAMGLVKEGE---------NFTILTD 476
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED+ D+D T G I +Q + ++D A L AK A ++ +
Sbjct: 477 IQGLEDANGDMDFKVAGTSKG-ITAIQMDIKVDGLTKDILQAALAQAKKGRAFILGKMLE 535
Query: 237 VISN 240
I+
Sbjct: 536 CIAE 539
Score = 117 bits (293), Expect = 1e-24, Method: Composition-based stats.
Identities = 43/231 (18%), Positives = 83/231 (35%), Gaps = 27/231 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGML 66
R +++ ++K A G+ LV++G+T ++ AT E V + G +
Sbjct: 11 RTLTIETGKIAKQANGAVLVRYGETAVVVAATGTDTPREGVDFFPLTVDFEEKMYAVGKI 70
Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
P R GR + R+I R +R + QI+ + D
Sbjct: 71 PGGFLRR------EGRPAETAILTSRLIDRPIRPMFPDGYHNDVQIVCTAVSVDPDNAPD 124
Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
A+ GA A +G +A + G++ G IV+ + +
Sbjct: 125 IPAMIGASCA-------------LSISDIPFEGPIAGVRVGLIDGQFIVEPTVEQAKVSE 171
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
++ T I+ V+ A+ S++ + A I L++ Q+ +
Sbjct: 172 LNLAVAGTKD-AILMVEAGAKE--VSEEVMLDAIWFAHGEIKKLVEFQEKI 219
>gi|255030484|ref|ZP_05302435.1| polynucleotide phosphorylase/polyadenylase [Listeria monocytogenes
LO28]
Length = 420
Score = 147 bits (370), Expect = 1e-33, Method: Composition-based stats.
Identities = 49/236 (20%), Positives = 87/236 (36%), Gaps = 18/236 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
+R GR+ N++R +S + GS L G T L+ TL E ++ + ++
Sbjct: 198 IRPDGRKVNEIRPLSSEVGMLPRVHGSGLFTRGQTQALSVCTLAPLREHQIIDGLGTEEY 257
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y S G R A R+ G RAL+ V+ I +
Sbjct: 258 KRFMHHYNFPQFSVGETGPRRAPGRREIGHGALG----ERALQYVIPSEEEFPYTIRLVS 313
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V++++G + A+I G+ +A+ D ++ + V G I
Sbjct: 314 EVLESNGSSSQASICGSTLAMLDAGVPIKAPVAGIAMGLVKLGDDYTILSD--------- 364
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
+ ED D+D T G I +Q + S+ L AK+ +++
Sbjct: 365 IQGMEDHFGDMDFKVAGTKDG-ITALQMDIKIDGLSRQILDEALTQAKEGRLHILE 419
Score = 56.0 bits (133), Expect = 4e-06, Method: Composition-based stats.
Identities = 14/90 (15%), Positives = 33/90 (36%), Gaps = 3/90 (3%)
Query: 150 KFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERA 209
+G +A + G + G +++ + D+ T I V+ A+
Sbjct: 19 LVISDIPFEGPIAGVDVGRIDGKYVINPTIEQAEKSDISLTVAGTYD-AINMVEAGAKE- 76
Query: 210 TFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
S++ + + I L + Q+ +I+
Sbjct: 77 -VSEEAMLEAIMFGHEEIKRLCEFQQQIIA 105
>gi|189501482|ref|YP_001957199.1| polynucleotide phosphorylase/polyadenylase [Candidatus Amoebophilus
asiaticus 5a2]
gi|226702593|sp|B3EU51|PNP_AMOA5 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|189496923|gb|ACE05470.1| 3' exoribonuclease [Candidatus Amoebophilus asiaticus 5a2]
Length = 713
Score = 147 bits (370), Expect = 1e-33, Method: Composition-based stats.
Identities = 50/244 (20%), Positives = 86/244 (35%), Gaps = 16/244 (6%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56
+RL GR+ +++R I A GS L G+T LTT T L+E++ +
Sbjct: 320 LRLDGRKLDEIRAIESEIDYLPAAHGSSLFTRGETQSLTTVTLGTKLDEQLIDRALLNGY 379
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y STG R+ G RAL+ V+ L I I
Sbjct: 380 SRFMLHYNFPSFSTGEVKFNRGPGRREIGHGHL----AMRALKKVLPLDTENPYTIRIVS 435
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
D+++++G + A + +AL D + + + ++ + D
Sbjct: 436 DILESNGSSSMATVCAGSLALMDAGISIRSAVSGIAMGLLMDEQTG-------KHAILSD 488
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED+ D+D T G I Q + + + L AK ++
Sbjct: 489 ILGDEDALGDMDFKVAGTAKG-ITACQMDIKVSGLTPQLLQKALEQAKAGRLHILGEMNK 547
Query: 237 VISN 240
I+
Sbjct: 548 TITE 551
Score = 106 bits (264), Expect = 3e-21, Method: Composition-based stats.
Identities = 43/238 (18%), Positives = 89/238 (37%), Gaps = 28/238 (11%)
Query: 10 QMREISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRN----TKHGWITAEYG 64
+ REI++ ++K A+GS +V+ GDT LL T ++++ + ++ A G
Sbjct: 14 EHREITIETGKLAKQADGSVVVRMGDTMLLATVVFKQELDPTVDFLPLHVEYQEKFAAAG 73
Query: 65 MLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGG 124
+P R G+ G I R++ RA+R + + Q
Sbjct: 74 KIPGGFLRR------EGKLGDHEVLISRLVDRAIRPLFPDNYKHETQ------------- 114
Query: 125 TRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDST 184
I+ L + L + + +G ++ + + G +V+
Sbjct: 115 INIFLISADPEILPESLAGLAASAALMISPIPFEGPISEVRVARIDGQFVVNPTQSALEK 174
Query: 185 IDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNEV 242
D+D +I+ V+ E + A + A + I ++QK+ +++ V
Sbjct: 175 ADIDLMV-GGSEKNILMVE--GEMDEVQEADIIAAIQFAHEAIKLQCQVQKE-LADAV 228
>gi|163790856|ref|ZP_02185281.1| polynucleotide phosphorylase/polyadenylase [Carnobacterium sp. AT7]
gi|159873924|gb|EDP68003.1| polynucleotide phosphorylase/polyadenylase [Carnobacterium sp. AT7]
Length = 702
Score = 147 bits (370), Expect = 1e-33, Method: Composition-based stats.
Identities = 46/244 (18%), Positives = 85/244 (34%), Gaps = 18/244 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56
+R GR+ +++R ++ + A GS L G T L+ AT E ++ +
Sbjct: 318 IRPDGRKIDEIRSLASEIGLLPRAHGSGLFTRGQTQALSVATLAPLGEHQIIDGLGVENS 377
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y S G+ R+ G RAL V+ I +
Sbjct: 378 KRFIHHYNFPQYSVGSTGPSRGPGRREIGHGALG----ERALSQVIPSEEDFPYMIRLVA 433
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V++++G + A+I +AL D ++ + V +G + D
Sbjct: 434 EVLESNGSSSQASICAGTLALMDAGVPIKAPVAGIAMGLVKEGE---------NYTVLTD 484
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T G I +Q + ++ L AK +++
Sbjct: 485 IQGLEDHLGDMDFKVAGTSKG-ITALQMDIKIEGITEQILEEALIQAKKARMEILNELTS 543
Query: 237 VISN 240
I+
Sbjct: 544 TIAE 547
Score = 108 bits (269), Expect = 7e-22, Method: Composition-based stats.
Identities = 39/232 (16%), Positives = 85/232 (36%), Gaps = 26/232 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEK---VPMWIRNTKHGWITAEYGMLP 67
R +++ ++K A G+ L+++ DT +L+ A +K V + + G +P
Sbjct: 14 RTLTIEVGQLAKQANGATLIRYNDTVVLSAAVASKKAKDVDFFPLTVNYDEKMYSVGKIP 73
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R R + R+I R +R + QI + +
Sbjct: 74 GGFIKR------EARPSEYATLTARLIDRPIRPMFAEGFRNEVQITNTVMSVDQNCSPAF 127
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
+A+ G+ ++ G +A++ G + G I++ +++ D+
Sbjct: 128 SAMFGSSLS-------------LAISDIPFNGPIASVDVGRVDGEYIINPTVEQEALSDI 174
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
T I V+ A A S++ L I +L+ Q+++++
Sbjct: 175 HLTVAGTKD-AINMVESGA--AEVSEEDMLGALMFGHRAIQELVAFQEEIVA 223
>gi|332708787|ref|ZP_08428758.1| polyribonucleotide nucleotidyltransferase [Lyngbya majuscula 3L]
gi|332352329|gb|EGJ31898.1| polyribonucleotide nucleotidyltransferase [Lyngbya majuscula 3L]
Length = 716
Score = 147 bits (370), Expect = 1e-33, Method: Composition-based stats.
Identities = 49/243 (20%), Positives = 88/243 (36%), Gaps = 19/243 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKY-AEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTK 55
+R+ GR+ +Q+R +S + GS L G T +L+T T + + +
Sbjct: 323 VRVDGRKLDQVRPVSCQTSLLPQRVHGSALFNRGLTQVLSTVTLGTPGDAQTLDDLNPED 382
Query: 56 HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115
Y P S G + R+ G RAL V+ I +
Sbjct: 383 EKRYLHHYNFPPFSVGEVKPLRSPGRREIGHGAL----AERALVPVLPPQHEFPYVIRVV 438
Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIV 175
+V+ ++G T ++ G+ +AL D + + + + +G +
Sbjct: 439 SEVLSSNGSTSMGSVCGSTLALMDSGVPITKPVSGAAMGLIKEGDEV---------RILT 489
Query: 176 DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
D+ ED D+D TD+G I +Q + S D + AK +++
Sbjct: 490 DIQGIEDFLGDMDFKVAGTDTG-ITALQMDMKITGLSMDTIAQAIEQAKPARLHILEKML 548
Query: 236 DVI 238
VI
Sbjct: 549 AVI 551
Score = 101 bits (250), Expect = 1e-19, Method: Composition-based stats.
Identities = 47/235 (20%), Positives = 85/235 (36%), Gaps = 26/235 (11%)
Query: 10 QMREISLTRRV-SKYAEGSCLVKFGDTHLLTTAT---LEEKVPMWIRNTKHGWITAEYGM 65
R+I L + + + GS +++ GDT +L TAT E + + G
Sbjct: 11 DGRDIRLKVGLLAPQSGGSVMIQSGDTAVLVTATRAPGREGIDFLPLVVDYEERLYAAGR 70
Query: 66 LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125
+P R GR + R+I R LR + QI+ +
Sbjct: 71 IPGGFLRR------EGRPPEKVILTSRLIDRPLRPLFPSWLRDDIQIVATTLSMDEQVPP 124
Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185
A+TGA +A+ +AA+ G+L +++ Y E
Sbjct: 125 DVLAVTGASIAVLQGSIPFYG-------------PMAAVRVGLLGDDFMINPTYKEIENG 171
Query: 186 DVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
D+D + G ++ V+ A + + ++ + + DLIK Q D++
Sbjct: 172 DLDLVVAGSPQG-VIMVEAGANQ--LPEQDIIEAIDFGYEAVQDLIKAQHDLLEE 223
>gi|237722890|ref|ZP_04553371.1| polyribonucleotide nucleotidyltransferase [Bacteroides sp. 2_2_4]
gi|229447412|gb|EEO53203.1| polyribonucleotide nucleotidyltransferase [Bacteroides sp. 2_2_4]
Length = 708
Score = 147 bits (370), Expect = 1e-33, Method: Composition-based stats.
Identities = 50/243 (20%), Positives = 87/243 (35%), Gaps = 18/243 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHG 57
RL GR+ ++R I GS + G+T LT+ T L+EK+ +
Sbjct: 319 RLDGRKTTEIRPIWCEVGPLPGPHGSAIFTRGETQSLTSVTLGTKLDEKIIDDVLEHGKE 378
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P STG + V R+ G RAL+ + + + D
Sbjct: 379 RFLLHYNFPPFSTGEAKAQRGVGRREIGHGHL----AWRALKGQIPADY--PYVVRVVSD 432
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+++++G + A + +AL D ++ + + + G + D+
Sbjct: 433 ILESNGSSSMATVCAGTLALMDAGVKIKKPVSGIAMGLIKN-------PGEEKYAVLSDI 485
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T G I Q + S D LN AK+ ++ +
Sbjct: 486 LGDEDHLGDMDFKVTGTKDG-ITATQMDIKVDGLSYDILERALNQAKEGRMHILNKITET 544
Query: 238 ISN 240
I+
Sbjct: 545 IAE 547
Score = 105 bits (262), Expect = 5e-21, Method: Composition-based stats.
Identities = 39/241 (16%), Positives = 76/241 (31%), Gaps = 26/241 (10%)
Query: 3 LSGRQENQMREISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
GR I+L ++K A+GS +++ G+T LL T +
Sbjct: 12 PDGRT------ITLETGKLAKQADGSVMLRMGNTMLLATVCAAKDAVPGTDFMPLQVEYK 65
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
E GR R++ RALR + +
Sbjct: 66 EKFAAFGRFP--GGFTKREGRASDYEILTCRLVDRALRPLFPDNYHAEVY---------- 113
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
+ V + D L + + G ++ + + G +++ + +
Sbjct: 114 ---VNIILFSADGVDMPDALAGLAASAALAVSDIPFNGPISEVRVARIDGQFVINPTFEQ 170
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
D+D T +I+ V+ E S+ + +A + I K Q + ++ E
Sbjct: 171 LEKADMDLMVAATYE-NIMMVE--GEMHEVSEAELLEAMKVAHEAIKIHCKAQME-LTEE 226
Query: 242 V 242
V
Sbjct: 227 V 227
>gi|237713950|ref|ZP_04544431.1| polyribonucleotide nucleotidyltransferase [Bacteroides sp. D1]
gi|262409141|ref|ZP_06085685.1| polyribonucleotide nucleotidyltransferase [Bacteroides sp. 2_1_22]
gi|294647465|ref|ZP_06725048.1| polyribonucleotide nucleotidyltransferase [Bacteroides ovatus SD CC
2a]
gi|294808931|ref|ZP_06767656.1| polyribonucleotide nucleotidyltransferase [Bacteroides
xylanisolvens SD CC 1b]
gi|229446106|gb|EEO51897.1| polyribonucleotide nucleotidyltransferase [Bacteroides sp. D1]
gi|262352888|gb|EEZ01984.1| polyribonucleotide nucleotidyltransferase [Bacteroides sp. 2_1_22]
gi|292637175|gb|EFF55610.1| polyribonucleotide nucleotidyltransferase [Bacteroides ovatus SD CC
2a]
gi|294443866|gb|EFG12608.1| polyribonucleotide nucleotidyltransferase [Bacteroides
xylanisolvens SD CC 1b]
Length = 708
Score = 147 bits (370), Expect = 1e-33, Method: Composition-based stats.
Identities = 50/243 (20%), Positives = 87/243 (35%), Gaps = 18/243 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHG 57
RL GR+ ++R I GS + G+T LT+ T L+EK+ +
Sbjct: 319 RLDGRKTTEIRPIWCEVGPLPGPHGSAIFTRGETQSLTSVTLGTKLDEKIIDDVLEHGKE 378
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P STG + V R+ G RAL+ + + + D
Sbjct: 379 RFLLHYNFPPFSTGEAKAQRGVGRREIGHGHL----AWRALKGQIPADY--PYVVRVVSD 432
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+++++G + A + +AL D ++ + + + G + D+
Sbjct: 433 ILESNGSSSMATVCAGTLALMDAGVKIKKPVSGIAMGLIKN-------PGEEKYAVLSDI 485
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T G I Q + S D LN AK+ ++ +
Sbjct: 486 LGDEDHLGDMDFKVTGTKDG-ITATQMDIKVDGLSYDILERALNQAKEGRMHILNKITET 544
Query: 238 ISN 240
I+
Sbjct: 545 IAE 547
Score = 105 bits (262), Expect = 5e-21, Method: Composition-based stats.
Identities = 39/241 (16%), Positives = 76/241 (31%), Gaps = 26/241 (10%)
Query: 3 LSGRQENQMREISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
GR I+L ++K A+GS +++ G+T LL T +
Sbjct: 12 PDGRT------ITLETGKLAKQADGSVMLRMGNTMLLATVCAAKDAVPGTDFMPLQVEYK 65
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
E GR R++ RALR + +
Sbjct: 66 EKFAAFGRFP--GGFTKREGRASDYEILTCRLVDRALRPLFPDNYHAEVY---------- 113
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
+ V + D L + + G ++ + + G +++ + +
Sbjct: 114 ---VNIILFSADGVDMPDALAGLAASAALAVSDIPFNGPISEVRVARIDGQFVINPTFEQ 170
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
D+D T +I+ V+ E S+ + +A + I K Q + ++ E
Sbjct: 171 LEKADMDLMVAATYE-NIMMVE--GEMHEVSEAELLEAMKVAHEAIKIHCKAQME-LTEE 226
Query: 242 V 242
V
Sbjct: 227 V 227
>gi|327396265|dbj|BAK13687.1| polyribonucleotide nucleotidyltransferase Pnp [Pantoea ananatis
AJ13355]
Length = 715
Score = 147 bits (370), Expect = 1e-33, Method: Composition-based stats.
Identities = 44/242 (18%), Positives = 91/242 (37%), Gaps = 18/242 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR+++ +R + + V GS L G+T L TATL + + + +
Sbjct: 321 RIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTTRDAQNLDELMGERTD 380
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + R+ G + R + +V+ + + + +
Sbjct: 381 SFLFHYNFPPYSVGETGMVGSPKRREIGHGRL----AKRGVLAVMPKAEDFPYTVRVVSE 436
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ GA +AL D ++ + V + + +
Sbjct: 437 ITESNGSSSMASVCGASLALMDAGVPIKASVAGIAMGLVKEDDKFVVLSD---------I 487
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D + G I +Q + +++ LN AK ++ + +
Sbjct: 488 LGDEDHLGDMDFKVAGSREG-ITALQMDIKIEGITREIMQVALNQAKGARLHILGVMEQA 546
Query: 238 IS 239
IS
Sbjct: 547 IS 548
Score = 93.4 bits (230), Expect = 2e-17, Method: Composition-based stats.
Identities = 38/232 (16%), Positives = 76/232 (32%), Gaps = 27/232 (11%)
Query: 14 ISLTRRV-SKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----HGWITAEYGMLPR 68
++L + ++ A + +V DT + T ++K + T G +P
Sbjct: 22 VTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKTKPGQDFFPLTVNYQERTYAAGRIPG 81
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
S R GR I R+I R +R + + Q+I +
Sbjct: 82 SFFRR------EGRPSEGETLISRLIDRPVRPLFPEGFVNEVQVIATVVSVNPQVHPDIV 135
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+ GA A G + A G + +++ E T +D
Sbjct: 136 AMIGASAA-------------LALSGLPFNGPIGAARVGYINDQYVLNPTADELKTSRLD 182
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
T + ++ V+ AE S++ + D+ +I+ +++
Sbjct: 183 LVVAGTQN-AVLMVESEAEI--LSEEQMLGAVVFGHDQQQIVIENINSLVAE 231
>gi|50083658|ref|YP_045168.1| polynucleotide phosphorylase/polyadenylase [Acinetobacter sp. ADP1]
gi|81393846|sp|Q6FF12|PNP_ACIAD RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|49529634|emb|CAG67346.1| polyribonucleotide nucleotidyltransferase (Polynucleotide
phosphorylase) (PNPase) [Acinetobacter sp. ADP1]
Length = 697
Score = 147 bits (370), Expect = 1e-33, Method: Composition-based stats.
Identities = 49/239 (20%), Positives = 88/239 (36%), Gaps = 10/239 (4%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R+ GR +R I + V A GS L G+T L T TL + +T G T
Sbjct: 317 RIDGRDTKTVRAIDVQVGVLDRAHGSALFTRGETQALVTTTLGNTRDALMVDTLAGTKTD 376
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
+ + V R R+ R +++V+ + I I D+ ++
Sbjct: 377 NFMLHYNFPAYSVGETGRESGPKRREIGHGRLARRGVQAVLPAADRFPYVIRIVSDITES 436
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
+G + A++ GA ++L D ++ + V +G A+ + E
Sbjct: 437 NGSSSMASVCGASLSLMDAGVPLKAPVAGIAMGLVKEGERFAVLSD---------ILGDE 487
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
D D+D + +G I +Q + +++ LN A ++ VIS
Sbjct: 488 DHLGDMDFKVAGSANG-ITALQMDIKIEGITEEIMEVALNQAYAGRMHILNEMNKVISR 545
Score = 88.4 bits (217), Expect = 8e-16, Method: Composition-based stats.
Identities = 40/228 (17%), Positives = 75/228 (32%), Gaps = 28/228 (12%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----HGWITAEYGMLPR 68
+ L V++ A + LV G +L + K + G +P
Sbjct: 18 VVLETGRVARQAN-TVLVTMGGVTVLVAVVAQPKAKAGQDFFPLTVNYQEKQYAAGRIPG 76
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
G R GR I R+I R +R + QI A
Sbjct: 77 GYGKR------EGRASEAETLISRLIDRPIRPLFPEGYFNEIQITATVVSSDKTMDADIA 130
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+ GA AL +G + G++ G +++ ++ + + D+D
Sbjct: 131 AMLGASAALSIAGT-------------PFRGPIGGARVGLINGEYVLNPNFEQLAQSDLD 177
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
T+S ++ V+ A+ S+D + D + ++ K+
Sbjct: 178 LVVAGTES-AVLMVESEAKE--LSEDQMLGAVLFGHDEMQIAVQAIKE 222
>gi|260558389|ref|ZP_05830585.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
C68]
gi|260075563|gb|EEW63869.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
C68]
Length = 708
Score = 147 bits (370), Expect = 1e-33, Method: Composition-based stats.
Identities = 45/243 (18%), Positives = 85/243 (34%), Gaps = 18/243 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56
+R GR+ +++R +S + GS L G T L+ T E ++ +
Sbjct: 318 IRPDGRKLDEIRPLSSEVSLLPRVHGSGLFTRGQTQALSACTLAPLGEHQIIDGLGVEVS 377
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y S G+ + + R+ G RAL V+ I +
Sbjct: 378 KRFIHHYNFPQFSVGSTGRAGSPGRREIGHGALG----ERALAQVIPSEEEFPYTIRLVA 433
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V++++G + A+I +AL D ++ + V G + D
Sbjct: 434 EVLESNGSSSQASICAGTLALMDAGVPIKAPVAGIAMGLVSDGE---------NYTILTD 484
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T G I +Q + ++ L AK ++++
Sbjct: 485 IQGLEDHLGDMDFKVAGTKDG-ITALQMDIKIQGITEQILTEALTQAKQARMEILEELTS 543
Query: 237 VIS 239
I+
Sbjct: 544 TIA 546
Score = 113 bits (281), Expect = 3e-23, Method: Composition-based stats.
Identities = 41/231 (17%), Positives = 84/231 (36%), Gaps = 26/231 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEK---VPMWIRNTKHGWITAEYGMLP 67
R + + ++K A G+ LV++GDT +L+ A ++ + + G +P
Sbjct: 14 RPLQIEVGQLAKQANGAVLVRYGDTVVLSAAVASKEAKDTDFFPLTINYEEKMYAAGKIP 73
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R GR + R+I R +R + Q+ ++ D
Sbjct: 74 GGFIKR------EGRPSTEATLTARLIDRPIRPMFAEGFRNEVQVTNIVMSVETDCSPAM 127
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
AA+ G+ +A G +A + G + G +++ + D+
Sbjct: 128 AAMLGSSLA-------------LSISDIPFDGPIAGVEVGRVNGEYVLNPTVEQAEQTDI 174
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
+ T I V+ A+ S++ L D I +L+ Q++++
Sbjct: 175 ELTVAGTKQ-AINMVESGAKE--VSEEDMLGALLFGFDAIKELVAFQEEIV 222
>gi|257885733|ref|ZP_05665386.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
1,231,501]
gi|257821589|gb|EEV48719.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
1,231,501]
Length = 708
Score = 147 bits (370), Expect = 1e-33, Method: Composition-based stats.
Identities = 45/243 (18%), Positives = 85/243 (34%), Gaps = 18/243 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56
+R GR+ +++R +S + GS L G T L+ T E ++ +
Sbjct: 318 IRPDGRKLDEIRPLSSEVSLLPRVHGSGLFTRGQTQALSACTLAPLGEHQIIDGLGVEVS 377
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y S G+ + + R+ G RAL V+ I +
Sbjct: 378 KRFIHHYNFPQFSVGSTGRAGSPGRREIGHGALG----ERALAQVIPSEEEFPYTIRLVA 433
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V++++G + A+I +AL D ++ + V G + D
Sbjct: 434 EVLESNGSSSQASICAGTLALMDAGVPIKAPVAGIAMGLVSDGE---------NYTILTD 484
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T G I +Q + ++ L AK ++++
Sbjct: 485 IQGLEDHLGDMDFKVAGTKDG-ITALQMDIKIQGITEQILTEALTQAKQARMEILEELTS 543
Query: 237 VIS 239
I+
Sbjct: 544 TIA 546
Score = 111 bits (278), Expect = 7e-23, Method: Composition-based stats.
Identities = 41/231 (17%), Positives = 83/231 (35%), Gaps = 26/231 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEK---VPMWIRNTKHGWITAEYGMLP 67
R + + ++K A G+ LV++GDT +L+ A ++ + + G +P
Sbjct: 14 RPLQIEVGQLAKQANGAVLVRYGDTVVLSAAVASKEAKDTDFFPLTINYEEKMYAAGKIP 73
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R GR + R+I R +R + Q+ ++ D
Sbjct: 74 GGFIKR------EGRPSTEATLTARLIDRPIRPMFAEGFRNEVQVTNIVMSVETDCSPAM 127
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
AA+ G+ +A G +A + G + G +++ + D+
Sbjct: 128 AAMLGSSLA-------------LSISDIPFDGPIAGVEVGRVNGEYVLNPTVEQAEQTDI 174
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
+ T I V+ A+ S+ L D I +L+ Q++++
Sbjct: 175 ELTVAGTKQ-AINMVESGAKE--VSEKDMLGALLFGFDAIKELVAFQEEIV 222
>gi|53715606|ref|YP_101598.1| polynucleotide phosphorylase/polyadenylase [Bacteroides fragilis
YCH46]
gi|60683550|ref|YP_213694.1| polynucleotide phosphorylase/polyadenylase [Bacteroides fragilis
NCTC 9343]
gi|253566582|ref|ZP_04844035.1| polyribonucleotide nucleotidyltransferase [Bacteroides sp. 3_2_5]
gi|265767451|ref|ZP_06095117.1| polyribonucleotide nucleotidyltransferase [Bacteroides sp. 2_1_16]
gi|81313402|sp|Q5L7Z7|PNP_BACFN RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|81381032|sp|Q64N73|PNP_BACFR RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|52218471|dbj|BAD51064.1| polyribonucleotide nucleotidyltransferase [Bacteroides fragilis
YCH46]
gi|60494984|emb|CAH09802.1| putative polyribonucleotide nucleotidyltransferase [Bacteroides
fragilis NCTC 9343]
gi|251944754|gb|EES85229.1| polyribonucleotide nucleotidyltransferase [Bacteroides sp. 3_2_5]
gi|263252756|gb|EEZ24268.1| polyribonucleotide nucleotidyltransferase [Bacteroides sp. 2_1_16]
gi|301165064|emb|CBW24632.1| putative polyribonucleotide nucleotidyltransferase [Bacteroides
fragilis 638R]
Length = 708
Score = 147 bits (370), Expect = 1e-33, Method: Composition-based stats.
Identities = 50/243 (20%), Positives = 89/243 (36%), Gaps = 18/243 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHG 57
RL GR+ ++R I GS + G+T LT+ T L+EK+ +
Sbjct: 319 RLDGRKTTEIRPIWCEVGYLPGPHGSAIFTRGETQSLTSVTLGTKLDEKIIDDVLAHGKE 378
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P STG + V R+ G RAL+ ++ + + D
Sbjct: 379 RFLLHYNFPPFSTGEAKAQRGVGRREIGHGNL----AHRALKRMIPEDY--PYVVRVVSD 432
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+++++G + A + +AL D ++ + + + G + D+
Sbjct: 433 ILESNGSSSMATVCAGTLALMDAGVKIKKPVSGIAMGLIKN-------AGEEKYAVLSDI 485
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T G I Q + S + LN AK+ ++ ++
Sbjct: 486 LGDEDHLGDMDFKVTGTKDG-ITATQMDIKVDGLSYEILERALNQAKEGRMHILGKIEET 544
Query: 238 ISN 240
IS
Sbjct: 545 ISE 547
Score = 103 bits (257), Expect = 2e-20, Method: Composition-based stats.
Identities = 36/230 (15%), Positives = 72/230 (31%), Gaps = 19/230 (8%)
Query: 8 ENQMREISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGML 66
R I+L ++K A+GS +++ G+T LL T + E
Sbjct: 11 LGDGRTITLETGKLAKQADGSVMLRMGNTMLLATVCAAKDAVPGTDFMPLQVEYKEKFAA 70
Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
GR R++ RALR + +
Sbjct: 71 FGRFP--GGFTKREGRASDYEILTCRLVDRALRPLFPDNYHAEVY-------------VN 115
Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
+ V + D L + + G ++ + + G +++ + + D
Sbjct: 116 IILFSADGVDMPDALAGLAASAALAVSDIPFNGPISEVRVARIDGKFVINPTFDQLEQAD 175
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+D T +I+ V+ E + S+ + +A + I K Q +
Sbjct: 176 MDIMVAATYE-NIMMVE--GEMSEVSEAELLEAMKVAHEAIKVHCKAQME 222
>gi|322382340|ref|ZP_08056247.1| polynucleotide phosphorylase-like protein/polyadenylase-like
protein [Paenibacillus larvae subsp. larvae B-3650]
gi|321153693|gb|EFX46068.1| polynucleotide phosphorylase-like protein/polyadenylase-like
protein [Paenibacillus larvae subsp. larvae B-3650]
Length = 699
Score = 147 bits (370), Expect = 1e-33, Method: Composition-based stats.
Identities = 46/244 (18%), Positives = 84/244 (34%), Gaps = 18/244 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56
+R GR +++R I + GS L G T L+ T + ++ + +
Sbjct: 307 VRPDGRALDEIRPIECDISLLPRTHGSGLFTRGQTQALSVCTLGALGDVQILDGLDLEET 366
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P S G A R+ G RA+ V+ I +
Sbjct: 367 KRFMHHYNFPPFSVGEARPLRAPGRREIGHGALGA----RAIEQVIPSEEEFPYTIRLVS 422
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+VI+++G T A+I + +AL D ++ + + + D
Sbjct: 423 EVIESNGSTSQASICASMLALMDAGVPIKAPVAGIAMGLIKD---------GQHFSILTD 473
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T G + +Q + +D L AK+ +++
Sbjct: 474 IQGMEDHLGDMDFKVAGTAKG-VTALQMDIKINGIDRDILHQALTQAKEGRMFILEKMLS 532
Query: 237 VISN 240
IS+
Sbjct: 533 RISD 536
Score = 121 bits (304), Expect = 7e-26, Method: Composition-based stats.
Identities = 40/233 (17%), Positives = 83/233 (35%), Gaps = 26/233 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATL---EEKVPMWIRNTKHGWITAEYGMLP 67
R +SL ++K A S LV++GDT +L T T + + + + G +P
Sbjct: 6 RPLSLETGRLAKQANASVLVRYGDTVVLCTVTASSEPKDLDFFPLTVNYEERLYAVGKIP 65
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R GR ++ R+I R +R + Q++ + +
Sbjct: 66 GGFIKR------EGRPSEKAILASRLIDRPIRPLFPEGFRNEVQVVAIVMSVDQECSPEI 119
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
AA+TG A + G + + G + G +++ + + D+
Sbjct: 120 AAMTGVSAA-------------LSISNIPFNGPIGGVIVGRIDGEFVINPTTEQAAKSDI 166
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
T I+ V+ A A ++ + ++I ++ +Q+ +
Sbjct: 167 HLTVAGTKD-AIMMVEAGA--AEVPEEVMLEAIMFGHEQIKKIVAVQEQFVEE 216
>gi|238918428|ref|YP_002931942.1| polynucleotide phosphorylase/polyadenylase [Edwardsiella ictaluri
93-146]
gi|259534121|sp|C5BFC1|PNP_EDWI9 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|238867996|gb|ACR67707.1| polyribonucleotide nucleotidyltransferase [Edwardsiella ictaluri
93-146]
Length = 707
Score = 147 bits (370), Expect = 1e-33, Method: Composition-based stats.
Identities = 42/242 (17%), Positives = 89/242 (36%), Gaps = 18/242 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVP----MWIRNTKHG 57
R+ GR+++ +R + + V GS L G+T L TATL + + +
Sbjct: 315 RIDGREKDMIRALDVRTGVLPRTHGSALFTRGETQALVTATLGTERDAQNIDELMGERTD 374
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + R+ G + R + +V+ + + +
Sbjct: 375 RFLLHYNFPPYSVGETGMMGSPKRREIGHGRL----AKRGVLAVMPSQDAFPYTVRVVSE 430
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ GA +AL D ++ + V + + +
Sbjct: 431 ITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEQDNFVVLSD---------I 481
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D + G + +Q + +++ LN AK ++ + +
Sbjct: 482 LGDEDHLGDMDFKVAGSRDG-VTALQMDIKIEGITREIMQVALNQAKGARLHILGVMEQA 540
Query: 238 IS 239
I+
Sbjct: 541 IN 542
Score = 87.6 bits (215), Expect = 1e-15, Method: Composition-based stats.
Identities = 37/234 (15%), Positives = 72/234 (30%), Gaps = 28/234 (11%)
Query: 14 ISLTRRV-SKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKHGWITAEYGMLPR 68
++L + ++ A + +V DT + T E + + G P
Sbjct: 16 VTLETGMMARQATAAVMVTMDDTAVFVTVVGAKKAREGQDFFPLTVNYQERAYAAGRFPG 75
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
R GR G R+I R +R + L Q++ +
Sbjct: 76 GFFRR------EGRPGEGETLTARLIDRPIRPLFPEGFLNEVQVVATVVSVNPQVSPDIV 129
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+ GA A G + A G + +++ E +D
Sbjct: 130 AMIGASAA-------------LSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKQSRLD 176
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNEV 242
T ++ V+ +E S+D + ++ +I+ K ++ EV
Sbjct: 177 LVVAGT-DNAVLMVE--SEADLLSEDQMLGAVVFGHEQQQIVIENIK-ALAAEV 226
>gi|115470767|ref|NP_001058982.1| Os07g0168000 [Oryza sativa Japonica Group]
gi|50509724|dbj|BAD31776.1| putative polynucleotide phosphorylase [Oryza sativa Japonica Group]
gi|113610518|dbj|BAF20896.1| Os07g0168000 [Oryza sativa Japonica Group]
Length = 902
Score = 147 bits (370), Expect = 1e-33, Method: Composition-based stats.
Identities = 45/241 (18%), Positives = 86/241 (35%), Gaps = 13/241 (5%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEE-----KVPMWIRNTKH 56
R GR ++R I+ + A GS L G+T L TL + ++ + +
Sbjct: 448 RSDGRSPCELRPINSQCGLLPRAHGSALFTRGETQALAVVTLGDYQMAQRIDNLVDTEES 507
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
+Y P S G + A + R+ G RAL ++ I ++
Sbjct: 508 KSFYLQYTFPPSSVGEVGRIGAPNRREIGHGML----AERALEPILPPEEDFPYTIRVES 563
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+ +++G + A++ G +AL D ++ + VL G + D
Sbjct: 564 TITESNGSSSMASVCGGCLALQDAGVPIKFPVAGIAMGLVLDTLEFG---GDGKPLILSD 620
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED++ D+D ++G I Q + + L A+D ++
Sbjct: 621 ITGAEDASGDMDFKVAGNENG-ISAFQMDIKVVGITLPIMEHALLQARDGRKHILNEMSK 679
Query: 237 V 237
Sbjct: 680 C 680
Score = 93.4 bits (230), Expect = 2e-17, Method: Composition-based stats.
Identities = 35/225 (15%), Positives = 68/225 (30%), Gaps = 19/225 (8%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRST 70
R I + + + A S +V G+T + ++ L + E T
Sbjct: 99 RHILVETGHIGRQASASVMVTDGETIVYSSVCLADTPNDPSDFFPMSVHYQERLSAAGRT 158
Query: 71 GNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAI 130
GR + R+I R LR + QI+ + AI
Sbjct: 159 S--GGFFKREGRAKDHEVLVCRLIDRPLRPTMPKGFYYETQILSWVFSYDGIHSPDSLAI 216
Query: 131 TGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDAN 190
T A VA+ K +A + GM+ +V+ + ++D
Sbjct: 217 TAAGVAM-------------ALSEVPNKQTIAGVRVGMINDQFVVNPTTEQMDDSELDLV 263
Query: 191 FVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
T I+ ++ +++ + + I ++ K
Sbjct: 264 MAGT-DSAILMIE--GYCDFLTEEKLLQAVETGQGAIREICKAID 305
>gi|262370055|ref|ZP_06063382.1| polyribonucleotide nucleotidyltransferase [Acinetobacter johnsonii
SH046]
gi|262315094|gb|EEY96134.1| polyribonucleotide nucleotidyltransferase [Acinetobacter johnsonii
SH046]
Length = 697
Score = 147 bits (370), Expect = 1e-33, Method: Composition-based stats.
Identities = 50/239 (20%), Positives = 89/239 (37%), Gaps = 10/239 (4%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R+ GR +R I + V A GS L G+T L T TL + +T G T
Sbjct: 317 RIDGRDTKTVRAIDVQVGVLGRAHGSALFTRGETQALVTTTLGNTRDALMVDTLAGTKTD 376
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
+ + V R R+ R +++V+ + I I D+ ++
Sbjct: 377 NFMLHYNFPAYSVGETGRESGPKRREIGHGRLARRGVQAVLPAADRFPYVIRIVSDITES 436
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
+G + A++ GA ++L D ++ + V +G A+ + E
Sbjct: 437 NGSSSMASVCGASLSLMDAGVPLKAPVAGIAMGLVKEGERFAVLSD---------ILGDE 487
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
D D+D + +G I +Q + +++ A LN A ++ VIS
Sbjct: 488 DHLGDMDFKVAGSANG-ITALQMDIKIEGITEEIMEAALNQAYAGRMHILNEMNQVISR 545
Score = 86.8 bits (213), Expect = 2e-15, Method: Composition-based stats.
Identities = 38/228 (16%), Positives = 72/228 (31%), Gaps = 28/228 (12%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----HGWITAEYGMLPR 68
+ L V++ A + ++ G +L + K + G +P
Sbjct: 18 VVLETGRVARQAN-TVVITMGGVQVLVAIVAQPKAKAGQDFFPLTVNYQEKQYAAGRIPG 76
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
G R GRQ I R+I R +R + Q+ A
Sbjct: 77 GYGKR------EGRQSEAETLISRLIDRPIRPLFPEGFYNEIQVTATVISSDKTMEGDIA 130
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+ GA A+ +A G++ G I++ + D+D
Sbjct: 131 AMLGASAAMSIAGVPFAG-------------PIAGARVGLINGEYILNPTLEQLKESDLD 177
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
T++ ++ V+ A+ S+D + D + I+ K+
Sbjct: 178 LVVAGTEA-AVLMVESEAKE--LSEDQMLGAVLFGHDEMQIAIQAIKE 222
>gi|222475095|ref|YP_002563511.1| polyribonucleotide nucleotidyltransferase [Anaplasma marginale str.
Florida]
gi|257096679|sp|B9KIE3|PNP_ANAMF RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|222419232|gb|ACM49255.1| polyribonucleotide nucleotidyltransferase [Anaplasma marginale str.
Florida]
Length = 805
Score = 147 bits (370), Expect = 1e-33, Method: Composition-based stats.
Identities = 51/243 (20%), Positives = 84/243 (34%), Gaps = 18/243 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +Q+R I + + + GS L GDT L L +E+V +
Sbjct: 320 RVDGRGFDQIRNIEIEVDLIPRSHGSALFTRGDTQALVITALGTPQDEQVVDGFDGDRRE 379
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y + G R+ G + RA+ V+ A I + +
Sbjct: 380 RFLLHYNFPSYAVGEAAALRPPGRREIGHGKL----AWRAIHPVLPTKADFPYTIRVVSE 435
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ ++DG + A + GA +AL D ++ + + +G A+ +
Sbjct: 436 ITESDGSSSMATVCGASLALMDTGVPLKSSVAGIAMGLIKEGDRYAVLSD---------I 486
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T G I +Q + D L AKD +I V
Sbjct: 487 IGDEDYLGDMDFKVAGTKDG-ITALQMDMKIRGIGFDIIEKSLQQAKDGRLFIIGKMDKV 545
Query: 238 ISN 240
I
Sbjct: 546 IKE 548
Score = 72.6 bits (176), Expect = 5e-11, Method: Composition-based stats.
Identities = 36/229 (15%), Positives = 81/229 (35%), Gaps = 24/229 (10%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLE---EKVPMWIRNTKHGWITAEYGMLP 67
R + + +++ A+G+ +V +G T +L+T + E V + + G +P
Sbjct: 14 RLLVIESGKIARQADGAVVVDYGGTSVLSTVVSQKSKEPVDFLPLTVQFLAKSYAIGRIP 73
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R G+ R I R++ R++R + I+ + T
Sbjct: 74 GGFFKR------EGKPSDRETLISRLVDRSIRPLFPTGFCDEIVIVCNLLSYDQVSPPET 127
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
A+ GA AL ++ + + I++ E + ++
Sbjct: 128 VALIGAAAALAISGIPFPTPIAGAKIGYIREEE-----------RYILNPSAEELARSEL 176
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
D + T S +V V+ A + ++ + + A ++ L ++
Sbjct: 177 DMFYSGTKS-SVVMVESEASELS--EEEMLGAVTFGHENCAQVLDLIEE 222
>gi|319956216|ref|YP_004167479.1| polyribonucleotide nucleotidyltransferase [Nitratifractor
salsuginis DSM 16511]
gi|319418620|gb|ADV45730.1| polyribonucleotide nucleotidyltransferase [Nitratifractor
salsuginis DSM 16511]
Length = 729
Score = 147 bits (370), Expect = 2e-33, Method: Composition-based stats.
Identities = 51/243 (20%), Positives = 87/243 (35%), Gaps = 22/243 (9%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWI------RNT 54
+R GR+ +++R IS+ + GSCL G+T L T TL E + R+
Sbjct: 345 VRPDGRKPDEVRPISIETNLLPSVHGSCLFTRGETQALATVTLGEGKEGQLYELLTERSP 404
Query: 55 KHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIII 114
+ Y P G A S R+ G RAL V+D R I +
Sbjct: 405 RTERFMVHYNFPPFCVGEARPIGAPSRRELGHGNL----AKRALEPVIDRELS--RTIRL 458
Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPI 174
++++++G + A + +AL + + V +G +
Sbjct: 459 VSEILESNGSSSMATVCAGSLALVSAEAEISALVAGVAMGLVKEGD---------RHRVL 509
Query: 175 VDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
D+ ED D+D T G I +Q + + L AK ++ L
Sbjct: 510 TDIMGLEDHDGDMDFKVAGTRKG-ITAMQLDIKLGGLDLEILSEALTQAKKARFHILDLM 568
Query: 235 KDV 237
++
Sbjct: 569 EEA 571
Score = 66.4 bits (160), Expect = 3e-09, Method: Composition-based stats.
Identities = 32/257 (12%), Positives = 73/257 (28%), Gaps = 52/257 (20%)
Query: 15 SLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKV---PMWIRNTKHGWITAEYGMLPRST 70
S T V++ +GS L + G T +L T +K P ++ +P
Sbjct: 16 SFTLGKVARQTDGSVLYRQGKTMILATVVSSDKAVHEPFLPLTVQYIEKAYAAAKIPGGF 75
Query: 71 GNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAI 130
R + R+I R+LR + I + +
Sbjct: 76 VKR------ESKPSDFETLTSRIIDRSLRPLFPEDFAYPTVITVLV-------------L 116
Query: 131 TGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDAN 190
+ + ++ VAA+ G + G ++ +D
Sbjct: 117 SADSEVDLQVAALHAANAALLVSDLPVERSVAAVRLGKIDGERRLNPPLSRMEESALDLL 176
Query: 191 FVMTDSGHIVEVQGSAER----------------------------ATFSQDHFFAMLNL 222
V + ++ ++ +A+ ++ A++
Sbjct: 177 LVGSGE-ELLMIEMAAKATEVIEVEEIPEPELLMGPMPVLLPHQESNELPEEELIALIGE 235
Query: 223 AKDRIADLIKLQKDVIS 239
A+ IA+ + ++ +
Sbjct: 236 ARGEIAEACRRYEEALR 252
>gi|257055504|ref|YP_003133336.1| polynucleotide phosphorylase/polyadenylase [Saccharomonospora
viridis DSM 43017]
gi|256585376|gb|ACU96509.1| guanosine pentaphosphate synthetase I/polynucleotide phosphorylase
[Saccharomonospora viridis DSM 43017]
Length = 823
Score = 147 bits (370), Expect = 2e-33, Method: Composition-based stats.
Identities = 46/242 (19%), Positives = 84/242 (34%), Gaps = 9/242 (3%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
+R+ GR +R+++ V A GS L + G+T +L TL E+ +
Sbjct: 351 VRIDGRGVTDIRQLAAEVSVVPRAHGSALFERGETQILGVTTLNMLRMEQQLDTLSPETT 410
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P STG + R+ G RAL VV I
Sbjct: 411 KRFLHHYNFPPYSTGETGRVGTPKRREIGHGML----AERALVPVVPKREEFPYAIRQVS 466
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+ + ++G T ++ + ++L + ++ + V + + D
Sbjct: 467 EALGSNGSTSMGSVCASTMSLLNAGVPLKAPVAGIAMGLVSDEVENENGETEVRYVALTD 526
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED+ D+D T I +Q + D A L A+D ++ + +
Sbjct: 527 ILGAEDAFGDMDFKVAGTRE-IITALQLDTKLDGIPSDVLAAALEQARDARLTILDVMAE 585
Query: 237 VI 238
I
Sbjct: 586 AI 587
Score = 80.7 bits (197), Expect = 2e-13, Method: Composition-based stats.
Identities = 36/246 (14%), Positives = 70/246 (28%), Gaps = 41/246 (16%)
Query: 12 REISLTRR-VSKYAEGSCLVKFG-DTHLLTTATLE----EKVPMWIRNTKHGWITAEYGM 65
R + +++ A GS + +T +L+ T E+ + G
Sbjct: 27 RTVRFETGRLARQAAGSVVAYLDDETMVLSATTASKQPKEQFDFFPLTVDVEERMYAAGR 86
Query: 66 LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125
+P + R GR + R+I R LR QI++ + D
Sbjct: 87 IPGAFFRR------EGRPSTDAILTCRLIDRPLRPSFAEGLRNEIQIVVTVQSLHPDDPY 140
Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185
AI A + G + + G++ G + + +
Sbjct: 141 DVLAINAASASTQIAG-------------LPFSGPIGGVRLGLIDGEWVAFPTWSQLERA 187
Query: 186 DVDANFVM------TDSGHIVEVQGSAERATF----------SQDHFFAMLNLAKDRIAD 229
+ + I+ V+ T ++ L+ AK I
Sbjct: 188 TFNMVVAGRIVGDRPEDVAIMMVEAEGTENTLDLIANGATAPTEKTVAEGLDAAKPFIRV 247
Query: 230 LIKLQK 235
L + Q+
Sbjct: 248 LCEAQQ 253
>gi|330466373|ref|YP_004404116.1| polynucleotide phosphorylase/polyadenylase [Verrucosispora maris
AB-18-032]
gi|328809344|gb|AEB43516.1| polynucleotide phosphorylase/polyadenylase [Verrucosispora maris
AB-18-032]
Length = 789
Score = 147 bits (370), Expect = 2e-33, Method: Composition-based stats.
Identities = 43/243 (17%), Positives = 81/243 (33%), Gaps = 14/243 (5%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
+R+ GR +R ++ V GS L + G+T +L TL E+ + K
Sbjct: 340 VRIDGRGPRDIRPLNAEVGVLPRVHGSALFERGETQILGVTTLNMLRMEQALDTLSPEKS 399
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P STG + + R+ G RAL V+ I
Sbjct: 400 KRYMHNYNFPPYSTGETGRVGSPKRREIGHGAL----AERALIPVLPSREEFPYAIRQVS 455
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+ + ++G T ++ + + L ++ + + G + D
Sbjct: 456 EALGSNGSTSMGSVCASTLGLLSAGVPLKAPVAGIAMGLISDE-----VDGKTQYVTLTD 510
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED+ D+D T + +Q + D A L A + ++ + +
Sbjct: 511 ILGAEDAFGDMDFKVAGTRDF-VTALQLDTKLDGIPSDVLAAALQQAHEARQTILDVMQR 569
Query: 237 VIS 239
I
Sbjct: 570 AIE 572
Score = 95.7 bits (236), Expect = 5e-18, Method: Composition-based stats.
Identities = 42/248 (16%), Positives = 77/248 (31%), Gaps = 39/248 (15%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKHGWITAEYGML 66
REI+ + +++ A GS + + G+T +L+ T E+ + G +
Sbjct: 23 REITFSTGRLARQAAGSVIAQLGETVVLSATTAGKQPKEQFDFFPLTVDVEERMYAAGRI 82
Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
P S R GR + R+I R LR Q++ +
Sbjct: 83 PGSFFRR------EGRPSEDAILTCRLIDRPLRPSFVKGLRNEVQVVETILALDPQHPYD 136
Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
AI A ++ G + A + G + + E S
Sbjct: 137 VVAINAASMST-------------KLSGLPFSGPIGATRMAHVDGQWVAFPTHEELSRAT 183
Query: 187 VDANFVMT----DSGHIVEVQGSAERATF----------SQDHFFAMLNLAKDRIADLIK 232
D I+ V+ A T +++ + L AK I +L +
Sbjct: 184 FDMVVAGRALADGDVAIMMVEAEATEHTVKLVADGAPAPTEEVVASGLEAAKPAIRELCR 243
Query: 233 LQKDVISN 240
Q + ++
Sbjct: 244 AQSE-LAE 250
>gi|304396352|ref|ZP_07378233.1| polyribonucleotide nucleotidyltransferase [Pantoea sp. aB]
gi|304355861|gb|EFM20227.1| polyribonucleotide nucleotidyltransferase [Pantoea sp. aB]
Length = 711
Score = 147 bits (370), Expect = 2e-33, Method: Composition-based stats.
Identities = 44/242 (18%), Positives = 91/242 (37%), Gaps = 18/242 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR+++ +R + + V GS L G+T L TATL + + + +
Sbjct: 315 RIDGREKDMIRGLDVRTGVLPRTHGSSLFTRGETQALVTATLGTTRDAQNLDELMGERTD 374
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + R+ G + R + +V+ + + + +
Sbjct: 375 SFLFHYNFPPYSVGETGMVGSPKRREIGHGRL----AKRGVLAVMPKAEDFPYTVRVVSE 430
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ GA +AL D ++ + V + + +
Sbjct: 431 ITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEDEKFVVLSD---------I 481
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D + G I +Q + +++ LN AK ++ + +
Sbjct: 482 LGDEDHLGDMDFKVAGSREG-ITALQMDIKIEGITREIMQEALNQAKGARLHILGVMEQA 540
Query: 238 IS 239
IS
Sbjct: 541 IS 542
Score = 93.4 bits (230), Expect = 2e-17, Method: Composition-based stats.
Identities = 37/232 (15%), Positives = 75/232 (32%), Gaps = 27/232 (11%)
Query: 14 ISLTRRV-SKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----HGWITAEYGMLPR 68
++L + ++ A + +V DT + T ++K + T G +P
Sbjct: 16 VTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKSKPGQDFFPLTVNYQERTYAAGRIPG 75
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
S R GR I R+I R +R + + Q+I +
Sbjct: 76 SFFRR------EGRPSEGETLISRLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVHPDIV 129
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+ GA A G + A G + +++ E +D
Sbjct: 130 AMMGASAA-------------LALSGLPFNGPIGAARVGYINDQYVLNPTADELKQSRLD 176
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
T + ++ V+ AE S++ + D+ +I+ +++
Sbjct: 177 LVVAGTQN-AVLMVESEAEI--LSEEQMLGAVVFGHDQQQIVIENINALVAE 225
>gi|257878824|ref|ZP_05658477.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
1,230,933]
gi|257881461|ref|ZP_05661114.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
1,231,502]
gi|257890683|ref|ZP_05670336.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
1,231,410]
gi|261207096|ref|ZP_05921785.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium TC
6]
gi|289565902|ref|ZP_06446342.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
D344SRF]
gi|293563621|ref|ZP_06678065.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
E1162]
gi|257813052|gb|EEV41810.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
1,230,933]
gi|257817119|gb|EEV44447.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
1,231,502]
gi|257827043|gb|EEV53669.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
1,231,410]
gi|260078724|gb|EEW66426.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium TC
6]
gi|289162275|gb|EFD10135.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
D344SRF]
gi|291604421|gb|EFF33911.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
E1162]
Length = 708
Score = 147 bits (370), Expect = 2e-33, Method: Composition-based stats.
Identities = 45/243 (18%), Positives = 85/243 (34%), Gaps = 18/243 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56
+R GR+ +++R +S + GS L G T L+ T E ++ +
Sbjct: 318 IRPDGRKLDEIRPLSSEVSLLPRVHGSGLFTRGQTQALSACTLAPLGEHQIIDGLGVEVS 377
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y S G+ + + R+ G RAL V+ I +
Sbjct: 378 KRFIHHYNFPQFSVGSTGRAGSPGRREIGHGALG----ERALAQVIPSEEEFPYTIRLVA 433
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V++++G + A+I +AL D ++ + V G + D
Sbjct: 434 EVLESNGSSSQASICAGTLALMDAGVPIKAPVAGIAMGLVSDGE---------NYTILTD 484
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T G I +Q + ++ L AK ++++
Sbjct: 485 IQGLEDHLGDMDFKVAGTKDG-ITALQMDIKIQGITEQILTEALTQAKQARMEILEELTS 543
Query: 237 VIS 239
I+
Sbjct: 544 TIA 546
Score = 113 bits (281), Expect = 3e-23, Method: Composition-based stats.
Identities = 41/231 (17%), Positives = 84/231 (36%), Gaps = 26/231 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEK---VPMWIRNTKHGWITAEYGMLP 67
R + + ++K A G+ LV++GDT +L+ A ++ + + G +P
Sbjct: 14 RPLQIEVGQLAKQANGAVLVRYGDTVVLSAAVASKEAKDTDFFPLTINYEEKMYAAGKIP 73
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R GR + R+I R +R + Q+ ++ D
Sbjct: 74 GGFIKR------EGRPSTEATLTARLIDRPIRPMFAEGFRNEVQVTNIVMSVETDCSPAM 127
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
AA+ G+ +A G +A + G + G +++ + D+
Sbjct: 128 AAMLGSSLA-------------LSISDIPFDGPIAGVEVGRVNGEYVLNPTVEQAEQTDI 174
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
+ T I V+ A+ S++ L D I +L+ Q++++
Sbjct: 175 ELTVAGTKQ-AINMVESGAKE--VSEEDMLGALLFGFDAIKELVAFQEEIV 222
>gi|125557368|gb|EAZ02904.1| hypothetical protein OsI_25038 [Oryza sativa Indica Group]
Length = 865
Score = 147 bits (370), Expect = 2e-33, Method: Composition-based stats.
Identities = 45/241 (18%), Positives = 86/241 (35%), Gaps = 13/241 (5%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEE-----KVPMWIRNTKH 56
R GR ++R I+ + A GS L G+T L TL + ++ + +
Sbjct: 411 RSDGRSPCELRPINSQCGLLPRAHGSALFTRGETQALAVVTLGDYQMAQRIDNLVDTEES 470
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
+Y P S G + A + R+ G RAL ++ I ++
Sbjct: 471 KSFYLQYTFPPSSVGEVGRIGAPNRREIGHGML----AERALEPILPPEEDFPYTIRVES 526
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+ +++G + A++ G +AL D ++ + VL G + D
Sbjct: 527 TITESNGSSSMASVCGGCLALQDAGVPIKFPVAGIAMGLVLDTLEFG---GDGKPLILSD 583
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED++ D+D ++G I Q + + L A+D ++
Sbjct: 584 ITGAEDASGDMDFKVAGNENG-ISAFQMDIKVVGITLPIMEHALLQARDGRKHILNEMSK 642
Query: 237 V 237
Sbjct: 643 C 643
Score = 70.3 bits (170), Expect = 2e-10, Method: Composition-based stats.
Identities = 25/152 (16%), Positives = 52/152 (34%), Gaps = 3/152 (1%)
Query: 84 GGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVALHDCLQH 143
G + + R+I R LR + QI+ + AIT A VA+ C
Sbjct: 120 DGETVLVCRLIDRPLRPTMPKGFYYETQILSWVFSYDGIHSPDSLAITAAGVAICSCSYL 179
Query: 144 MEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQ 203
+ + K +A + GM+ +V+ + ++D T I+ ++
Sbjct: 180 PQSFLCRALSEVPNKQTIAGVRIGMINDQFVVNPTTEQMDDSELDLVMAGT-DSAILMIE 238
Query: 204 GSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
+++ + + I ++ K
Sbjct: 239 --GYCDFLTEEKLLQAVETGQGAIREICKAID 268
>gi|291616014|ref|YP_003518756.1| Pnp [Pantoea ananatis LMG 20103]
gi|291151044|gb|ADD75628.1| Pnp [Pantoea ananatis LMG 20103]
Length = 757
Score = 147 bits (370), Expect = 2e-33, Method: Composition-based stats.
Identities = 44/242 (18%), Positives = 91/242 (37%), Gaps = 18/242 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR+++ +R + + V GS L G+T L TATL + + + +
Sbjct: 363 RIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTTRDAQNLDELMGERTD 422
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + R+ G + R + +V+ + + + +
Sbjct: 423 SFLFHYNFPPYSVGETGMVGSPKRREIGHGRL----AKRGVLAVMPKAEDFPYTVRVVSE 478
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ GA +AL D ++ + V + + +
Sbjct: 479 ITESNGSSSMASVCGASLALMDAGVPIKASVAGIAMGLVKEDDKFVVLSD---------I 529
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D + G I +Q + +++ LN AK ++ + +
Sbjct: 530 LGDEDHLGDMDFKVAGSREG-ITALQMDIKIEGITREIMQVALNQAKGARLHILGVMEQA 588
Query: 238 IS 239
IS
Sbjct: 589 IS 590
Score = 93.4 bits (230), Expect = 2e-17, Method: Composition-based stats.
Identities = 38/232 (16%), Positives = 76/232 (32%), Gaps = 27/232 (11%)
Query: 14 ISLTRRV-SKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----HGWITAEYGMLPR 68
++L + ++ A + +V DT + T ++K + T G +P
Sbjct: 64 VTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKTKPGQDFFPLTVNYQERTYAAGRIPG 123
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
S R GR I R+I R +R + + Q+I +
Sbjct: 124 SFFRR------EGRPSEGETLISRLIDRPVRPLFPEGFVNEVQVIATVVSVNPQVHPDIV 177
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+ GA A G + A G + +++ E T +D
Sbjct: 178 AMIGASAA-------------LALSGLPFNGPIGAARVGYINDQYVLNPTADELKTSRLD 224
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
T + ++ V+ AE S++ + D+ +I+ +++
Sbjct: 225 LVVAGTQN-AVLMVESEAEI--LSEEQMLGAVVFGHDQQQIVIENINSLVAE 273
>gi|220903340|ref|YP_002478652.1| polynucleotide phosphorylase/polyadenylase [Desulfovibrio
desulfuricans subsp. desulfuricans str. ATCC 27774]
gi|257096688|sp|B8J1X9|PNP_DESDA RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|219867639|gb|ACL47974.1| Polyribonucleotide nucleotidyltransferase [Desulfovibrio
desulfuricans subsp. desulfuricans str. ATCC 27774]
Length = 743
Score = 147 bits (370), Expect = 2e-33, Method: Composition-based stats.
Identities = 43/243 (17%), Positives = 87/243 (35%), Gaps = 19/243 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +R I + + A GS L + G+T L ATL +E+ +
Sbjct: 324 RIDGRDTTTVRPIQIQTGLLPRAHGSALFRRGETKSLVVATLGSSTDEQRMDSLTGDVTK 383
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G R R + ++LR V+ A + + +
Sbjct: 384 RFMLHYNFPPFSVGEVKP-----VRVSRREIGHGALAEKSLRPVLPADADFPFTLRVVAE 438
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
++++G + AA+ G ++L D + + + +G + +
Sbjct: 439 TMESNGSSSMAAVCGGSLSLMDAGVPVSAPVAGVAMGLIKEGEKFIVLTD---------I 489
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED+ D+D T G + VQ + + + + A++ +++
Sbjct: 490 LGDEDALGDMDFKIAGTAEG-VTGVQMDIKITGLTTEIMRTAMQQAREGRLHILEEMAKA 548
Query: 238 ISN 240
I++
Sbjct: 549 IAS 551
Score = 85.7 bits (210), Expect = 5e-15, Method: Composition-based stats.
Identities = 43/228 (18%), Positives = 81/228 (35%), Gaps = 25/228 (10%)
Query: 13 EISLTRR-VSKYAEGSCLVKFGDTHLLTTAT---LEEKVPMWIRNTKHGWITAEYGMLPR 68
EI + ++ A G ++ G T +L T LE + ++ G +P
Sbjct: 19 EIIIESGRMANQAHGEVWIQCGGTVVLVTVCSQPLEFDKGFFPLTVEYSEKMYAAGRIPG 78
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
S R GR R + R+I R +R + Q++ + +
Sbjct: 79 SFFRR-----EIGRPSERETLVARLIDRPIRPLFPKGLNEDVQVLASVISADQENESDVL 133
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+TGA AL +G VA + G +++ + + + D++
Sbjct: 134 ALTGASAALM-------------LSPLPFEGPVAGGRIARVGGQFVLNPTFEQQAQSDLN 180
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
F + + V+G A S+D L + +I L+++Q
Sbjct: 181 IVFAASGD-ALTMVEGDAR--FISEDVIIEALEWGRLQILPLVEIQHK 225
>gi|307129389|ref|YP_003881405.1| polynucleotide phosphorylase/polyadenylase [Dickeya dadantii 3937]
gi|306526918|gb|ADM96848.1| polynucleotide phosphorylase/polyadenylase [Dickeya dadantii 3937]
Length = 706
Score = 147 bits (370), Expect = 2e-33, Method: Composition-based stats.
Identities = 44/242 (18%), Positives = 92/242 (38%), Gaps = 18/242 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR+++ +R + + V GS L G+T L TATL + ++ + +
Sbjct: 315 RIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTERDAQIIDELIGERTD 374
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + R+ G + R + +V+ + + +
Sbjct: 375 RFLLHYNFPPYSVGETGMVGSPKRREIGHGRL----AKRGVLAVMPKPEAFPYTVRVVSE 430
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ GA +AL D ++ + V +G + +
Sbjct: 431 ITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLSD---------I 481
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D + G + +Q + +++ LN AK ++ + +
Sbjct: 482 LGDEDHLGDMDFKVAGSREG-VTALQMDIKIEGITREIMQVALNQAKGARLHILGVMEQA 540
Query: 238 IS 239
IS
Sbjct: 541 IS 542
Score = 90.7 bits (223), Expect = 1e-16, Method: Composition-based stats.
Identities = 38/232 (16%), Positives = 74/232 (31%), Gaps = 27/232 (11%)
Query: 14 ISLTRRV-SKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----HGWITAEYGMLPR 68
++L + ++ A + +V DT + T + + T G +P
Sbjct: 16 VTLETGMMARQATAAVMVSMDDTAVFVTVVGAKHAKPGQDFFPLTVNYQERTYAAGRIPG 75
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
S R GR R+I R +R + + Q+I +
Sbjct: 76 SFFRR------EGRPSEGETLTSRLIDRPIRPLFPDGFVNEVQVIATVVSVNPQVNPDIV 129
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+ GA A G + A G + +++ E T +D
Sbjct: 130 AMIGASAA-------------LSLSGIPFNGPIGAARVGYINDQYVLNPTTEELKTSRLD 176
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
T+ G ++ V+ +E S+D + D+ +I+ K + +
Sbjct: 177 LVVAGTE-GAVLMVE--SEADLLSEDQMLGAVVFGHDQQQIVIENIKSLTAE 225
>gi|82750875|ref|YP_416616.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus
RF122]
gi|117940113|sp|Q2YXP2|PNP_STAAB RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|82656406|emb|CAI80825.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
RF122]
Length = 698
Score = 147 bits (370), Expect = 2e-33, Method: Composition-based stats.
Identities = 44/244 (18%), Positives = 89/244 (36%), Gaps = 18/244 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56
+R GR+ +++R++ + GS L G T L+ T + ++ + +
Sbjct: 318 IRPDGRKPDEIRQLDSEVGILPRTHGSGLFTRGQTQALSVLTLGALGDYQLIDGLGPEEE 377
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y S G A R+ G RAL+ ++ +A I I
Sbjct: 378 KRFMHHYNFPNFSVGETGPVRAPGRREIGHGALG----ERALKYIIPDTADFPYTIRIVS 433
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V++++G + A+I G+ +AL D ++ + V + + D
Sbjct: 434 EVLESNGSSSQASICGSTLALMDAGVPIKAPVAGIAMGLVTRED---------SYTILTD 484
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED+ D+D T G I +Q + +++ L A+ +++
Sbjct: 485 IQGMEDALGDMDFKVAGTKEG-ITAIQMDIKIDGLTREIIEEALEQARRGRLEIMNHMLQ 543
Query: 237 VISN 240
I
Sbjct: 544 TIDQ 547
Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats.
Identities = 42/231 (18%), Positives = 84/231 (36%), Gaps = 26/231 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKV---PMWIRNTKHGWITAEYGMLP 67
R +++ ++K A G+ LV++GDT +L+TAT ++ + + G +P
Sbjct: 15 RSLTIETGQLAKQANGAVLVRYGDTVVLSTATASKEPRDGDFFPLTVNYEEKMYAAGKIP 74
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R GR G + R+I R +R + QI+ D +
Sbjct: 75 GGFKKR------EGRPGDDATLTARLIDRPIRPLFPKGYKHDVQIMNMVLSADPDCSPQM 128
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
AA+ G+ +A +G +A ++ G + G I++ E +
Sbjct: 129 AAMIGSSMA-------------LSVSDIPFQGPIAGVNVGYIDGKYIINPTVEEKEVSRL 175
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
D + V+ A ++ + + I L+ Q+ ++
Sbjct: 176 DLEVAGHKD-AVNMVEAGASE--ITEQEMLEAIFFGHEEIQRLVDFQQQIV 223
>gi|157376516|ref|YP_001475116.1| polynucleotide phosphorylase/polyadenylase [Shewanella sediminis
HAW-EB3]
gi|257096709|sp|A8FYR5|PNP_SHESH RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|157318890|gb|ABV37988.1| Polyribonucleotide nucleotidyltransferase [Shewanella sediminis
HAW-EB3]
Length = 704
Score = 147 bits (370), Expect = 2e-33, Method: Composition-based stats.
Identities = 40/240 (16%), Positives = 85/240 (35%), Gaps = 10/240 (4%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R+ GR+ + +R +++ V GS L G+T L T TL + ++ G T
Sbjct: 317 RIDGREPDMVRGLNVMAGVLPRTHGSALFTRGETQALVTCTLGTERDAQKVDSIMGEYTN 376
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
+ + V G R ++ R + +V+ + + + ++ ++
Sbjct: 377 RFMLHYNFPPYSVGETGFVGSPKRREIGHGKLAWRGINAVMPSAEEFPYSVRVVSEITES 436
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
+G + A++ G +AL D ++ + V +G + + E
Sbjct: 437 NGSSSMASVCGTSLALMDAGVPIKTSVAGIAMGLVKEGDDFVVLSD---------ILGDE 487
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
D D+D T G I +Q + +++ L A ++ + I
Sbjct: 488 DHLGDMDFKVAGTRDG-ITALQMDIKIEGINKEIMQIALQQAYGARVHILNVMDQAIGEH 546
Score = 98.8 bits (244), Expect = 6e-19, Method: Composition-based stats.
Identities = 38/228 (16%), Positives = 73/228 (32%), Gaps = 27/228 (11%)
Query: 14 ISLTRRV-SKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGMLPR 68
++L V ++ A+ + L GDT +L T E + + T G +P
Sbjct: 18 VTLETGVIARQADAAVLASMGDTTVLVTVVGKKFEEPGRDFFPLTVNYQEKTYAAGKIPG 77
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
R GR I R+I R +R + Q+II + +
Sbjct: 78 GFFKR------EGRPSESETLIARLIDRPIRPLFPNGFKNEVQVIITVVSVDPEINPDVI 131
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
++ G A G + G G +++ + + D+D
Sbjct: 132 SMIGTSAA-------------LAISGLPFNGPLGVARVGYTDGEYVLNPNVSQLVDSDLD 178
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
T G ++ V+ +E A ++ + D+ +I +
Sbjct: 179 LIVAGTQ-GAVLMVE--SEAAALPEEVMLGGVVYGHDQQQVVISAINE 223
>gi|269137767|ref|YP_003294467.1| polyribonucleotide nucleotidyltransferase [Edwardsiella tarda
EIB202]
gi|267983427|gb|ACY83256.1| polyribonucleotide nucleotidyltransferase [Edwardsiella tarda
EIB202]
gi|304557824|gb|ADM40488.1| Polyribonucleotide nucleotidyltransferase [Edwardsiella tarda
FL6-60]
Length = 707
Score = 146 bits (369), Expect = 2e-33, Method: Composition-based stats.
Identities = 42/242 (17%), Positives = 89/242 (36%), Gaps = 18/242 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVP----MWIRNTKHG 57
R+ GR+++ +R + + V GS L G+T L TATL + + +
Sbjct: 315 RIDGREKDMIRALDVRTGVLPRTHGSALFTRGETQALVTATLGTERDAQNIDELTGERTD 374
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + R+ G + R + +V+ + + +
Sbjct: 375 RFLLHYNFPPYSVGETGMMGSPKRREIGHGRL----AKRGVLAVMPSQDAFPYTVRVVSE 430
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ GA +AL D ++ + V + + +
Sbjct: 431 ITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEQDNFVVLSD---------I 481
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D + G + +Q + +++ LN AK ++ + +
Sbjct: 482 LGDEDHLGDMDFKVAGSRDG-VTALQMDIKIEGITREIMQVALNQAKGARLHILGVMEQA 540
Query: 238 IS 239
I+
Sbjct: 541 IN 542
Score = 88.4 bits (217), Expect = 9e-16, Method: Composition-based stats.
Identities = 36/230 (15%), Positives = 69/230 (30%), Gaps = 20/230 (8%)
Query: 14 ISLTRRV-SKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGN 72
++L + ++ A + +V DT + T +K E
Sbjct: 16 VTLETGMMARQATAAVMVTMDDTAVFVTVVGAKKAREGQDFFPLTVNYQERAYAAGRFP- 74
Query: 73 RVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITG 132
GR G R+I R +R + L Q++ + A+ G
Sbjct: 75 -GGFFRREGRPGEGETLTARLIDRPIRPLFPEGFLNEVQVVATVVSVNPQVSPDIVAMIG 133
Query: 133 AWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFV 192
A A G + A G + +++ E +D
Sbjct: 134 ASAA-------------LSLSGIPFNGPIGAARVGYINDQYVLNPTMDELKQSRLDLVVA 180
Query: 193 MTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNEV 242
T ++ V+ +E S+D + D+ +I+ K ++ EV
Sbjct: 181 GT-DNAVLMVE--SEADLLSEDQMLGAVVFGHDQQQVVIENIK-ALAAEV 226
>gi|260550547|ref|ZP_05824757.1| polyribonucleotide nucleotidyltransferase [Acinetobacter sp.
RUH2624]
gi|260406462|gb|EEW99944.1| polyribonucleotide nucleotidyltransferase [Acinetobacter sp.
RUH2624]
Length = 697
Score = 146 bits (369), Expect = 2e-33, Method: Composition-based stats.
Identities = 49/239 (20%), Positives = 88/239 (36%), Gaps = 10/239 (4%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R+ GR +R I + V A GS L G+T L T TL + +T G T
Sbjct: 317 RIDGRDTKTVRAIDVQVGVLDRAHGSALFTRGETQALVTTTLGNTRDALMVDTLSGTKTD 376
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
+ + V R R+ R +++V+ + I I D+ ++
Sbjct: 377 NFMLHYNFPAYSVGETGRESGPKRREIGHGRLARRGVQAVLPAADRFPYVIRIVSDITES 436
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
+G + A++ GA ++L D ++ + V +G A+ + E
Sbjct: 437 NGSSSMASVCGASLSLMDAGVPLKAPVAGIAMGLVKEGDRFAVLSD---------ILGDE 487
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
D D+D + +G I +Q + +++ LN A ++ VIS
Sbjct: 488 DHLGDMDFKVAGSANG-ITALQMDIKIEGITEEIMEVALNQAFAGRMHILNEMNKVISR 545
Score = 86.8 bits (213), Expect = 2e-15, Method: Composition-based stats.
Identities = 38/228 (16%), Positives = 75/228 (32%), Gaps = 28/228 (12%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----HGWITAEYGMLPR 68
+ L V++ A + L+ G +L + K + G +P
Sbjct: 18 VVLETGRVARQAN-TVLITMGGVTVLVAVVAQSKAKAGQDFFPLTVNYQEKQYAAGRIPG 76
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
G R GR I R+I R +R + Q+ A
Sbjct: 77 GYGKR------EGRASEAETLISRLIDRPIRPLFPEGYFNEIQVTATVVSSDKTMEADIA 130
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+ G AL +G + A G++ G +++ ++ + + D+D
Sbjct: 131 AMLGTSAALAIAGT-------------PFRGPIGAARVGLINGEYVLNPNFEQMAQSDLD 177
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
T++ ++ V+ A+ S+D + D + I+ K+
Sbjct: 178 LVVAGTEA-AVLMVESEAKE--LSEDQMLGAVLFGHDEMQIAIQAIKE 222
>gi|224125980|ref|XP_002319726.1| predicted protein [Populus trichocarpa]
gi|222858102|gb|EEE95649.1| predicted protein [Populus trichocarpa]
Length = 853
Score = 146 bits (369), Expect = 2e-33, Method: Composition-based stats.
Identities = 45/241 (18%), Positives = 83/241 (34%), Gaps = 13/241 (5%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEK-----VPMWIRNTKH 56
R GR +R I + + A GS L G+T L TL +K V + +
Sbjct: 376 RSDGRTPEGIRPIDSSCGLLPRAHGSALFTRGETQSLAVVTLGDKQMAQRVDNLVDEEEF 435
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
+Y P G + A S R+ G RAL ++ + ++
Sbjct: 436 KRFYLQYSFPPSCVGEVGRIGAPSRREIGHGML----AERALEPILPSENDFPYTVRVES 491
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+ +++G + A++ G +AL D ++ + VL G + D
Sbjct: 492 TITESNGSSSMASVCGGCLALQDAGVPVKCMIAGIAMGMVLDTEEFG---GDGTPLILSD 548
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED++ D+D + G + Q + + L A+D ++
Sbjct: 549 ITGSEDASGDMDFKVAGNEDG-VTAFQMDIKVGGITLPVMRTALLQARDGRKHILAEMLK 607
Query: 237 V 237
Sbjct: 608 C 608
Score = 84.1 bits (206), Expect = 1e-14, Method: Composition-based stats.
Identities = 35/230 (15%), Positives = 65/230 (28%), Gaps = 19/230 (8%)
Query: 12 REISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRST 70
R I + + A GS V G+T + T+ L++ E T
Sbjct: 26 RHIMVETGHLGRQASGSVTVTDGETIIYTSVCLDDVPSEPSDFYPLSVNYQERFSAAGRT 85
Query: 71 GNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAI 130
GR I R+I R LR + QI+ + A+
Sbjct: 86 S--GGFFKREGRLKDHEVLICRLIDRPLRPTMLKGFYHETQILSWVLSYDGLHSPDSLAV 143
Query: 131 TGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDAN 190
T A +A +A + G++ IV+ E +D
Sbjct: 144 TAAGIA-------------LALSEVPNTKVIAGVRVGLVDNKFIVNPTTKEMEESKLDLL 190
Query: 191 FVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
T I ++ ++ + + +D + + ++
Sbjct: 191 LAGT-DSAIFMIE--GYCNFLPEEKLLEAVQIGQDAVRTICNEVNALVKK 237
>gi|21672636|ref|NP_660703.1| polynucleotide phosphorylase/polyadenylase [Buchnera aphidicola
str. Sg (Schizaphis graminum)]
gi|25090941|sp|Q8K9H5|PNP_BUCAP RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|21623270|gb|AAM67914.1| polyribonucleotide nucleotidyltransferase [Buchnera aphidicola str.
Sg (Schizaphis graminum)]
Length = 707
Score = 146 bits (369), Expect = 2e-33, Method: Composition-based stats.
Identities = 48/243 (19%), Positives = 89/243 (36%), Gaps = 18/243 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVP----MWIRNTKHG 57
R+ GR+++ +R + + V GS L G+T L + TL + K
Sbjct: 315 RIDGREKDMIRALDIRTGVLPRTHGSSLFTRGETQSLVSVTLGTSRDAQNLDELLGDKTD 374
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + R+ G + R+L +V+ I I +
Sbjct: 375 NFLFHYNFPPYSVGEIGIVGSPKRREIGHGRL----AKRSLLAVMPKLDDFPYTIRIVSE 430
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ GA +AL D ++ + V +G + +
Sbjct: 431 ITESNGSSSMASVCGASLALMDAGVPIKSAVAGISMGLVKEGDKYVLLSD---------I 481
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T+ G I +Q + + + LN AK ++ + K
Sbjct: 482 LGDEDHLGDMDFKVSGTEEG-ITALQMDIKIEGITNEIMRIALNKAKSARLHILNVMKQA 540
Query: 238 ISN 240
+S
Sbjct: 541 LSK 543
Score = 91.4 bits (225), Expect = 9e-17, Method: Composition-based stats.
Identities = 38/233 (16%), Positives = 72/233 (30%), Gaps = 28/233 (12%)
Query: 14 ISLTRRV-SKYAEGSCLVKFGDTHLLTTATLEEKV----PMWIRNTKHGWITAEYGMLPR 68
I+L + ++ A + + DT + T E+ + + T G +P
Sbjct: 16 ITLETGIMARQATAAVMASMDDTAVFVTVVGEKTTNSSQKFFPLTVNYQERTYAVGRIPG 75
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
R GR R+I R +R + QII +
Sbjct: 76 GFFRR------EGRPSENEILTARLIDRPIRPLFPKGFCNEIQIIATVVSVNPQINPDII 129
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
+I GA A G + A G + +++ + + +D
Sbjct: 130 SIIGASAA-------------LSLSGIPFYGPIGAARVGFVNNQYVLNPTIDDMKSSFLD 176
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
T + ++ V+ AE S+D + + +I + +SNE
Sbjct: 177 LVVSGTQN-AVLMVE--AESKVLSEDKILGAIMFGHQQQQVVINNIR-SLSNE 225
>gi|293374237|ref|ZP_06620565.1| polyribonucleotide nucleotidyltransferase [Turicibacter sanguinis
PC909]
gi|325845651|ref|ZP_08168935.1| polyribonucleotide nucleotidyltransferase [Turicibacter sp. HGF1]
gi|292647070|gb|EFF65052.1| polyribonucleotide nucleotidyltransferase [Turicibacter sanguinis
PC909]
gi|325488349|gb|EGC90774.1| polyribonucleotide nucleotidyltransferase [Turicibacter sp. HGF1]
Length = 701
Score = 146 bits (369), Expect = 2e-33, Method: Composition-based stats.
Identities = 47/244 (19%), Positives = 86/244 (35%), Gaps = 18/244 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
+R GR+ +++R +S + GS L G T L+ TL E ++ + +
Sbjct: 314 VRPDGRKIDEIRPLSSRVDLLPRTHGSALFTRGQTQALSVCTLGALNEHQMLDGLEVEET 373
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P S G + A R+ G RAL+ V+ + +
Sbjct: 374 KRFMHHYNFPPFSVGETGRYGAPGRREIGHGALG----ERALKQVMPSEKDFPYTVRLVS 429
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V++++G T A+I + +AL ++ + V KG +
Sbjct: 430 EVLESNGSTSQASICASTMALMAAGVPIKAPVAGIAMGLVKKGENYTVLTD--------- 480
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T G + +Q + ++ L AK ++
Sbjct: 481 IQGMEDHLGDMDFKVAGTAKG-VTALQMDIKIEGLNRQILEEALQQAKVGRMQILNHMLG 539
Query: 237 VISN 240
IS
Sbjct: 540 TISE 543
Score = 114 bits (284), Expect = 1e-23, Method: Composition-based stats.
Identities = 41/233 (17%), Positives = 81/233 (34%), Gaps = 26/233 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATL---EEKVPMWIRNTKHGWITAEYGMLP 67
R +S ++K A S LV++GDT +L+T + + + + G +P
Sbjct: 14 RPLSFEIGELAKQANASVLVRYGDTVVLSTCVASKEPKDIDFFPLTIGYEERLYAVGKVP 73
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R GR + R+I R +R + Q+I + D
Sbjct: 74 GGFIKR------EGRPSEHAVLSGRLIDRPIRPLFPDGFRNDVQVINYVMSVDHDNSPAI 127
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
AA+ G+ + +G +A + G + G I++ E D+
Sbjct: 128 AAMIGS-------------SLSLSISDIPFEGPIAGVVVGRVDGKFIINPTVEELEKSDI 174
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
D T I V+ A+ ++ + + I ++ Q+ +++
Sbjct: 175 DLTVAGTKD-AINMVEAGAKEVP--EEDMLEAIMFGHEMIKQIVAFQEQIVAE 224
>gi|156311439|ref|XP_001617784.1| hypothetical protein NEMVEDRAFT_v1g47702 [Nematostella vectensis]
gi|156195791|gb|EDO25684.1| predicted protein [Nematostella vectensis]
Length = 443
Score = 146 bits (369), Expect = 2e-33, Method: Composition-based stats.
Identities = 45/243 (18%), Positives = 82/243 (33%), Gaps = 20/243 (8%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
RL GR+ ++R I GS + G+T L T TL E
Sbjct: 215 RLDGRKTTEIRPIWCEVDYLPSTHGSAIFTRGETQALATVTLGTSREANQIDLPSEQGEE 274
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P STG S R+ G RAL++++ + + +
Sbjct: 275 TFYLHYNFPPFSTGEARPLRGTSRREVGHGNL----AQRALKNMIPAD--CPYTVRVVSE 328
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
V++++G + A + +A+ D M + + + G+ A+ +
Sbjct: 329 VLESNGSSSMATVCSGTLAMMDAGIQMIKPVSGIAMGLITDGNNFAVLSD---------I 379
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T G I Q + D L+ A++ ++ +
Sbjct: 380 LGDEDHLGDMDFKVTGTADG-ITACQMDIKIDGLRYDIMEQALSQAREGRLHILGKLVET 438
Query: 238 ISN 240
++
Sbjct: 439 LAQ 441
Score = 52.5 bits (124), Expect = 5e-05, Method: Composition-based stats.
Identities = 15/119 (12%), Positives = 36/119 (30%), Gaps = 3/119 (2%)
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
A+ ++ + D L + + ++ + + G I++
Sbjct: 1 DYHAETQVMIQLMSHDENVMPDALAGLAASAALAVSDIPFYNLISEVRVARVDGNFIINP 60
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ +T D+D + V+ E S+ + A + I I Q+
Sbjct: 61 SREQLATSDLDMMI-GASMDSVAMVE--GEMKEISEAEMIEAIKFAHEAIKIQITAQEK 116
>gi|268592821|ref|ZP_06127042.1| polyribonucleotide nucleotidyltransferase [Providencia rettgeri DSM
1131]
gi|291311606|gb|EFE52059.1| polyribonucleotide nucleotidyltransferase [Providencia rettgeri DSM
1131]
Length = 707
Score = 146 bits (369), Expect = 2e-33, Method: Composition-based stats.
Identities = 46/242 (19%), Positives = 91/242 (37%), Gaps = 18/242 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR+++ +R + + V GS L G+T L TATL + +V +
Sbjct: 315 RIDGREKDMVRALDVRTGVLPRTHGSALFTRGETQALVTATLGTERDAQVIDQLMGEYTD 374
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + R+ G + R + +V+ A + + +
Sbjct: 375 RFLFHYNFPPYSVGETGMVGSPKRREIGHGRL----AKRGVLAVMPDHADFPYTVRVVSE 430
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ GA +AL D ++ + V +G + +
Sbjct: 431 ITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGEDFVVLSD---------I 481
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D + G I +Q + +++ LN AK ++ +
Sbjct: 482 LGDEDHLGDMDFKVAGSREG-ISALQMDIKIEGITREIMQVALNQAKGARLHILGTMEQA 540
Query: 238 IS 239
I+
Sbjct: 541 IN 542
Score = 92.2 bits (227), Expect = 6e-17, Method: Composition-based stats.
Identities = 39/232 (16%), Positives = 75/232 (32%), Gaps = 27/232 (11%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----HGWITAEYGMLPR 68
+S+ +++ A + +V DT + TA ++KV + T G +P
Sbjct: 16 VSIETGMIARQASAAVMVNMDDTAVFVTAVAQKKVKEGQDFFPLTVNYQERTYAAGRIPG 75
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
S R GR G I R+I R LR + QII +
Sbjct: 76 SFFRR------EGRPGEGETLIARLIDRPLRPLFPEGFYNEIQIIATVVSVNPQVNPDIV 129
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+ G + G + A G + +++ E +D
Sbjct: 130 AMIG-------------ASAVLALSGVPFNGPIGAARVGFINDQYVLNPTADELKNSRLD 176
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
T ++ V+ +E S++ + D+ +I+ +++
Sbjct: 177 LVVAGT-DNAVLMVE--SEADLLSEEQMLGAVVFGHDQQQVVIQNINELVKE 225
>gi|224000017|ref|XP_002289681.1| polyribonucleotide nucleotidyltransferase [Thalassiosira pseudonana
CCMP1335]
gi|220974889|gb|EED93218.1| polyribonucleotide nucleotidyltransferase [Thalassiosira pseudonana
CCMP1335]
Length = 721
Score = 146 bits (369), Expect = 2e-33, Method: Composition-based stats.
Identities = 45/239 (18%), Positives = 87/239 (36%), Gaps = 4/239 (1%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R+ GR+ N++R I + GS L G+T ++ TATL + + G
Sbjct: 282 RIDGRKLNEVRVIDSEAGLFPRVHGSALFTRGETQVVATATLGDSGMRQKIDRISGMEEK 341
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
+ + + V G G R + RAL + A I ++ V ++
Sbjct: 342 RFYLQYTFPPSCVGETGRVGAPGRREVGHGNLAERALVPTLPSEADFPYAIRVESLVTES 401
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
+G + A++ G +AL D ++ + +L G +S + D+ E
Sbjct: 402 NGSSSMASVCGGCLALMDAGVPIKSPIAGIAMG-MLLGDKGGVSDE--NAVIVSDILGTE 458
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
D+ +D G I Q + + + L+ AK+ ++ + +
Sbjct: 459 DALGTMDFKVAGNKEG-ITTFQLDIKCEGLTLETMKKALDQAKEGRLHILGEMEKALKE 516
Score = 61.4 bits (147), Expect = 1e-07, Method: Composition-based stats.
Identities = 32/206 (15%), Positives = 64/206 (31%), Gaps = 19/206 (9%)
Query: 31 KFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEI 90
GD+ L TA+ ++ + ++G KR+ GR +
Sbjct: 2 TRGDSVLYATASRDKDKRDIDFLPLSVEHQERFSSAGTTSGAFNKRD---GRPAEHEILV 58
Query: 91 QRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNK 150
R+I R LR ++ Q++ AIT + AL
Sbjct: 59 CRLIDRPLRPLIAEGWRHETQLLSWILSYDGVRTCDPLAITASAAALW------------ 106
Query: 151 FQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERAT 210
L VAA G + G +++ + ++ T ++ ++G+A
Sbjct: 107 -LSDVPLLKPVAAAMVGYIDGQLVLNPTVEQMKHSRLNLTVAGTKE-AVLMIEGAA--DF 162
Query: 211 FSQDHFFAMLNLAKDRIADLIKLQKD 236
+D + + I ++
Sbjct: 163 LPEDLMVEAVTFGHEAIKIQCAGLEE 188
>gi|323144053|ref|ZP_08078697.1| polyribonucleotide nucleotidyltransferase [Succinatimonas hippei
YIT 12066]
gi|322416166|gb|EFY06856.1| polyribonucleotide nucleotidyltransferase [Succinatimonas hippei
YIT 12066]
Length = 720
Score = 146 bits (369), Expect = 2e-33, Method: Composition-based stats.
Identities = 44/237 (18%), Positives = 85/237 (35%), Gaps = 10/237 (4%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R+ GR +R I++ + GS L G+T + T TL + G +
Sbjct: 319 RIDGRTLRMIRPITVASGILPRVHGSALFTRGETQAIATCTLGSERDAQTFEDMSGTRSD 378
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
+ + V + G R R+ RALR+V+ I + ++ ++
Sbjct: 379 RFILHYNFPPYCVGETGLIGSPKRREIGHGRLAKRALRAVLPDMERFPYTIRVVSEITES 438
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
+G + A++ G +AL D + + V +G A+ ++ E
Sbjct: 439 NGSSSMASVCGGSLALFDAGVPCKAAVAGIAMGLVKEGDRVAVLTDIM---------GDE 489
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
D D+D T G + +Q + +++ L A L+K+ +
Sbjct: 490 DHLGDMDFKVAGTTEG-VTALQMDIKTDGITREIMQQALTDAHAARLHLLKIMGRAL 545
Score = 79.9 bits (195), Expect = 3e-13, Method: Composition-based stats.
Identities = 33/229 (14%), Positives = 67/229 (29%), Gaps = 28/229 (12%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLE-----EKVPMWIRNTKHGWITAEYGMLP 67
I+L + + A+ + + DT + T E + + + G +P
Sbjct: 17 ITLETGAIGRQADSAVMASMDDTTVFATVVCNRREQVEGRDFFPLTVNYQERSYAVGRIP 76
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
S R GR I R+I R LR + +
Sbjct: 77 VSFFRR------EGRASEGETLISRLIDRPLRPLFPDGF-------------VNEVQVVV 117
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
++ D + + + G + A G + G +++ E D+
Sbjct: 118 TVMSANPEIPTDIISIIAASAALSTSGLPWNGPLGAARVGYINGQYVLNPLTSETEESDL 177
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
D +V V+ A+ +D + ++ +I K+
Sbjct: 178 DLVVAG-SDKAVVMVESEAKI--LPEDVMLGAVMYGHEQQQVVINEIKE 223
>gi|108800808|ref|YP_641005.1| ribonuclease PH [Mycobacterium sp. MCS]
gi|119869948|ref|YP_939900.1| ribonuclease PH [Mycobacterium sp. KMS]
gi|126436406|ref|YP_001072097.1| ribonuclease PH [Mycobacterium sp. JLS]
gi|123368907|sp|Q1B585|RNPH_MYCSS RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|166228293|sp|A3Q379|RNPH_MYCSJ RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|166228294|sp|A1UJV2|RNPH_MYCSK RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|108771227|gb|ABG09949.1| RNAse PH [Mycobacterium sp. MCS]
gi|119696037|gb|ABL93110.1| RNAse PH [Mycobacterium sp. KMS]
gi|126236206|gb|ABN99606.1| RNAse PH [Mycobacterium sp. JLS]
Length = 260
Score = 146 bits (369), Expect = 2e-33, Method: Composition-based stats.
Identities = 111/237 (46%), Positives = 156/237 (65%), Gaps = 1/237 (0%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R GR ++++R + +TR + + GS LV+FG+T ++ TA++ E VP W + T GW+TA
Sbjct: 4 REDGRLDDELRPVRITRGFTSHPAGSVLVEFGETRVMCTASVTEGVPRWRKGTGQGWLTA 63
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
EY MLP +T +R RE+V GR GGR+QEI R+IGR+LR+ +DL+ALG I IDCDV+QA
Sbjct: 64 EYAMLPAATHDRSDRESVKGRVGGRTQEISRLIGRSLRACIDLNALGENTIAIDCDVLQA 123
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
DGGTRTAAITGA+VAL D + K + L +AA+S G++ G VDL Y E
Sbjct: 124 DGGTRTAAITGAYVALADA-VTYLAAAEKLSDPRPLSCAIAAVSVGVVDGRVRVDLPYSE 182
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
DS +VD N V TD+G +VE+QG+ E ATF + +L+LA L +Q++ +
Sbjct: 183 DSRAEVDMNVVATDTGTLVEIQGTGEGATFPRSTLDKLLDLALASCDQLFVVQREAL 239
>gi|167465515|ref|ZP_02330604.1| polynucleotide phosphorylase/polyadenylase [Paenibacillus larvae
subsp. larvae BRL-230010]
Length = 705
Score = 146 bits (369), Expect = 2e-33, Method: Composition-based stats.
Identities = 46/244 (18%), Positives = 84/244 (34%), Gaps = 18/244 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56
+R GR +++R I + GS L G T L+ T + ++ + +
Sbjct: 313 VRPDGRALDEIRPIECDISLLPRTHGSGLFTRGQTQALSVCTLGALGDVQILDGLDLEET 372
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P S G A R+ G RA+ V+ I +
Sbjct: 373 KRFMHHYNFPPFSVGEARPLRAPGRREIGHGALGA----RAIEQVIPSEEEFPYTIRLVS 428
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+VI+++G T A+I + +AL D ++ + + + D
Sbjct: 429 EVIESNGSTSQASICASMLALMDAGVPIKAPVAGIAMGLIKD---------GQHFSILTD 479
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T G + +Q + +D L AK+ +++
Sbjct: 480 IQGMEDHLGDMDFKVAGTAKG-VTALQMDIKINGIDRDILHQALTQAKEGRMFILEKMLS 538
Query: 237 VISN 240
IS+
Sbjct: 539 RISD 542
Score = 121 bits (303), Expect = 8e-26, Method: Composition-based stats.
Identities = 40/233 (17%), Positives = 83/233 (35%), Gaps = 26/233 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATL---EEKVPMWIRNTKHGWITAEYGMLP 67
R +SL ++K A S LV++GDT +L T T + + + + G +P
Sbjct: 12 RPLSLETGRLAKQANASVLVRYGDTVVLCTVTASSEPKDLDFFPLTVNYEERLYAVGKIP 71
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R GR ++ R+I R +R + Q++ + +
Sbjct: 72 GGFIKR------EGRPSEKAILASRLIDRPIRPLFPEGFRNEVQVVAIVMSVDQECSPEI 125
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
AA+TG A + G + + G + G +++ + + D+
Sbjct: 126 AAMTGVSAA-------------LSISNIPFNGPIGGVIVGRIDGEFVINPTTEQAAKSDI 172
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
T I+ V+ A A ++ + ++I ++ +Q+ +
Sbjct: 173 HLTVAGTKD-AIMMVEAGA--AEVPEEVMLEAIMFGHEQIKKIVAVQEQFVEE 222
>gi|282600044|ref|ZP_05972801.2| polyribonucleotide nucleotidyltransferase [Providencia rustigianii
DSM 4541]
gi|282566848|gb|EFB72383.1| polyribonucleotide nucleotidyltransferase [Providencia rustigianii
DSM 4541]
Length = 685
Score = 146 bits (369), Expect = 2e-33, Method: Composition-based stats.
Identities = 47/242 (19%), Positives = 92/242 (38%), Gaps = 18/242 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR+++ +R + + V GS L G+T L TATL + +V +
Sbjct: 294 RIDGREKDMVRALDVRTGVLPRTHGSALFTRGETQALVTATLGTERDAQVIDQLMGEYTD 353
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + R+ G + R + +V+ A I + +
Sbjct: 354 RFLFHYNFPPYSVGETGMVGSPKRREIGHGRL----AKRGVLAVMPSHADFPYTIRVVSE 409
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ GA +AL D ++ + V +G+ + +
Sbjct: 410 ITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGNDFVVLSD---------I 460
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D + G I +Q + +++ LN AK ++ +
Sbjct: 461 LGDEDHLGDMDFKVAGSREG-ISALQMDIKIEGITREIMQVALNQAKGARLHILGTMEQA 519
Query: 238 IS 239
I+
Sbjct: 520 IN 521
Score = 71.0 bits (172), Expect = 1e-10, Method: Composition-based stats.
Identities = 42/230 (18%), Positives = 76/230 (33%), Gaps = 30/230 (13%)
Query: 20 VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----HGWITAEYGMLPRSTGNRVK 75
+++ A + +V DT + TA ++KV + T G +P S R
Sbjct: 2 IARQATAAVMVNMDDTAVFVTAVAQKKVKEGQDFFPLTVNYQERTYAAGRIPGSFFRR-- 59
Query: 76 REAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWV 135
GR G + R+I R LR + L QII + A+ GA
Sbjct: 60 ----EGRPGEGETLVARLIDRPLRPLFPEGFLNEIQIIATVVSVNPQVNPDIVAMIGASA 115
Query: 136 ALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTD 195
A G + A G + +++ E + +D T
Sbjct: 116 A-------------LALSGVPFNGPIGAARVGYINDQYVLNPTADELKSSRLDLVVAGT- 161
Query: 196 SGHIVEVQGSAERATFSQDHFFAMLNLAKDR----IADLIKLQKDVISNE 241
++ V+ AE + ++ + D+ I ++ L K+ +
Sbjct: 162 DSAVLMVESEAELLS--EEQMLGAVVFGHDQQQVVIQNINDLVKEAGKEK 209
>gi|224418070|ref|ZP_03656076.1| polynucleotide phosphorylase/polyadenylase [Helicobacter canadensis
MIT 98-5491]
gi|253827399|ref|ZP_04870284.1| polyribonucleotide nucleotidyltransferase [Helicobacter canadensis
MIT 98-5491]
gi|313141607|ref|ZP_07803800.1| nucleotidyltransferase [Helicobacter canadensis MIT 98-5491]
gi|253510805|gb|EES89464.1| polyribonucleotide nucleotidyltransferase [Helicobacter canadensis
MIT 98-5491]
gi|313130638|gb|EFR48255.1| nucleotidyltransferase [Helicobacter canadensis MIT 98-5491]
Length = 715
Score = 146 bits (369), Expect = 2e-33, Method: Composition-based stats.
Identities = 47/247 (19%), Positives = 83/247 (33%), Gaps = 23/247 (9%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW------IRNTK 55
R GR+ ++R IS+ A S L G T L ATL ++ +
Sbjct: 333 RADGRELKEVRPISIETNFLPNAHSSALFTRGQTQALVVATLGGEMDAQSYELLTDKAPL 392
Query: 56 HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115
Y P S G A R+ G RAL + V L + I +
Sbjct: 393 KERFMVHYNFPPFSVGEASSISAPGRRELGHGNL----AKRALEASVINGDL--KTIRLV 446
Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIV 175
++++++G + A + G +AL + V + AI ++
Sbjct: 447 SEILESNGSSSMATVCGGSLALAAAGIKCTSLIAGVAMGLVCENDKYAILTDIM------ 500
Query: 176 DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
ED D+D + G I +Q + + L AK+ ++ L +
Sbjct: 501 ---GLEDHDGDMDFKIAGSRRG-ITAMQMDIKLGGLKSEILQKALMQAKEARNHILDLME 556
Query: 236 DVISNEV 242
+ ++
Sbjct: 557 EA-KEKI 562
Score = 72.6 bits (176), Expect = 4e-11, Method: Composition-based stats.
Identities = 28/223 (12%), Positives = 63/223 (28%), Gaps = 29/223 (13%)
Query: 20 VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGNRVKREAV 79
+K GS ++ G+ +L T ++ + + E
Sbjct: 20 FAKQCSGSVYLQSGNNVVLATIAIDTQEVVEEDFLPLTVQYIEKAYAAGKFP--GGYIKR 77
Query: 80 SGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVALHD 139
+ G R+I R+LR + QI + ++ A
Sbjct: 78 EAKPGDFETLSARIIDRSLRPLFPKDYCYPTQITLMV-------------LSADEDADLQ 124
Query: 140 CLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHI 199
L + + L V+A+ G + G +++ +D +
Sbjct: 125 LLALNAASAALYVSEIPLSFPVSAVRIGRIEGEFVINPSLKALEESTLDLFVSGVKED-L 183
Query: 200 VEVQGSAERA-------------TFSQDHFFAMLNLAKDRIAD 229
+ ++ + S++ +L +AK I+
Sbjct: 184 LMIEMRSFGGVAIHQENTEFSANELSEEEMIEVLEIAKKAISQ 226
>gi|238755159|ref|ZP_04616505.1| hypothetical protein yruck0001_25730 [Yersinia ruckeri ATCC 29473]
gi|238706606|gb|EEP98977.1| hypothetical protein yruck0001_25730 [Yersinia ruckeri ATCC 29473]
Length = 706
Score = 146 bits (369), Expect = 2e-33, Method: Composition-based stats.
Identities = 44/242 (18%), Positives = 90/242 (37%), Gaps = 18/242 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR+++ +R + + V GS L G+T L TATL + + + +
Sbjct: 315 RIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQNIDELMGERTD 374
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + R+ G + R + +V+ + I + +
Sbjct: 375 SFLLHYNFPPYSVGETGMVGSPKRREIGHGRL----AKRGVLAVMPSPSEFPYTIRVVSE 430
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ GA +AL D ++ + V + +
Sbjct: 431 ITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKDEENFVVLSD---------I 481
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D + G I +Q + +++ L+ AK ++ + +
Sbjct: 482 LGDEDHLGDMDFKVAGSREG-ITALQMDIKIEGITREIMQEALSQAKGARLHILGVMEQA 540
Query: 238 IS 239
IS
Sbjct: 541 IS 542
Score = 91.8 bits (226), Expect = 7e-17, Method: Composition-based stats.
Identities = 35/232 (15%), Positives = 75/232 (32%), Gaps = 27/232 (11%)
Query: 14 ISLTRRV-SKYAEGSCLVKFGDTHLLTTATLEEKVPM----WIRNTKHGWITAEYGMLPR 68
+++ + ++ A + +V DT + T ++K + + T G +P
Sbjct: 16 VTIETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQSFFPLTVNYQERTYAAGRIPG 75
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
S R GR R+I R +R + L Q+I +
Sbjct: 76 SFFRR------EGRPSEGETLTSRLIDRPIRPLFPEGFLNEVQVIATVVSVNPQVNPDIV 129
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+ GA A G + A G + +++ E +D
Sbjct: 130 ALIGASAA-------------LSLSGIPFNGPIGAARVGFINDQYVLNPTTDELKESRLD 176
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
T + ++ V+ A+ S+D + ++ +I+ +++
Sbjct: 177 LVVAGTAA-AVLMVESEADI--LSEDQMLGAVVFGHEQQQVVIENINALVAE 225
>gi|251791031|ref|YP_003005752.1| polynucleotide phosphorylase/polyadenylase [Dickeya zeae Ech1591]
gi|247539652|gb|ACT08273.1| Polyribonucleotide nucleotidyltransferase [Dickeya zeae Ech1591]
Length = 706
Score = 146 bits (369), Expect = 2e-33, Method: Composition-based stats.
Identities = 44/242 (18%), Positives = 91/242 (37%), Gaps = 18/242 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR+++ +R + + V GS L G+T L TATL + + + +
Sbjct: 315 RIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTERDAQTIDELTGERTD 374
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + R+ G + R + +V+ + + +
Sbjct: 375 RFLLHYNFPPYSVGETGMVGSPKRREIGHGRL----AKRGVLAVMPKPEAFPYTVRVVSE 430
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ GA +AL D ++ + V +G + +
Sbjct: 431 ITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLSD---------I 481
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D + G + +Q + +++ LN AK ++ + +
Sbjct: 482 LGDEDHLGDMDFKVAGSREG-VTALQMDIKIEGITREIMQVALNQAKGARLHILGVMEQA 540
Query: 238 IS 239
IS
Sbjct: 541 IS 542
Score = 90.7 bits (223), Expect = 2e-16, Method: Composition-based stats.
Identities = 38/232 (16%), Positives = 74/232 (31%), Gaps = 27/232 (11%)
Query: 14 ISLTRRV-SKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----HGWITAEYGMLPR 68
++L + ++ A + +V DT + T + + T G +P
Sbjct: 16 VTLETGMMARQATAAVMVSMDDTAVFVTVVGAKHAKPGQDFFPLTVNYQERTYAAGRIPG 75
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
R GR I R+I R +R + + Q+I +
Sbjct: 76 GFFRR------EGRPSEGETLISRLIDRPIRPLFPDGFVNEVQVIATVVSVNPQVNPDIV 129
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+ GA A G + A G + +++ E T +D
Sbjct: 130 AMIGASAA-------------LSLSGIPFNGPIGAARVGYINDQYVLNPTTEELKTSRLD 176
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
T+ G ++ V+ +E S+D + D+ +I+ K + +
Sbjct: 177 LVVAGTE-GAVLMVE--SEADLLSEDQMLGAVVFGHDQQQIVIENIKSLTAE 225
>gi|163941544|ref|YP_001646428.1| polynucleotide phosphorylase/polyadenylase [Bacillus
weihenstephanensis KBAB4]
gi|229061410|ref|ZP_04198755.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus AH603]
gi|229134614|ref|ZP_04263424.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus
BDRD-ST196]
gi|226702619|sp|A9VT44|PNP_BACWK RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|163863741|gb|ABY44800.1| Polyribonucleotide nucleotidyltransferase [Bacillus
weihenstephanensis KBAB4]
gi|228648875|gb|EEL04900.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus
BDRD-ST196]
gi|228717833|gb|EEL69481.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus AH603]
Length = 717
Score = 146 bits (369), Expect = 2e-33, Method: Composition-based stats.
Identities = 44/244 (18%), Positives = 85/244 (34%), Gaps = 18/244 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56
+R GR+ +++R ++ + GS L G T L+ T + ++ + +
Sbjct: 315 IRPDGRKGDEIRPLASEVGILSRTHGSGLFTRGQTQALSICTLGALGDVQILDGLGVEES 374
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y S G R+ G RAL V+ + +
Sbjct: 375 KRFMHHYNFPSFSVGETRPMRGPGRREIGHGALG----ERALEPVLPSEKDFPYTVRLVS 430
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V++++G T A+I G+ +A+ D ++ + V G + D
Sbjct: 431 EVLESNGSTSQASICGSTLAMMDAGVPLKAPVAGIAMGLVKSGE---------HYTILTD 481
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T G + +Q + S++ L AK ++
Sbjct: 482 IQGMEDHLGDMDFKVAGTAKG-VTALQMDIKIDGLSREILEEALQQAKVGRMHILNHMLS 540
Query: 237 VISN 240
VI+
Sbjct: 541 VIAE 544
Score = 114 bits (286), Expect = 9e-24, Method: Composition-based stats.
Identities = 43/231 (18%), Positives = 89/231 (38%), Gaps = 26/231 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATL---EEKVPMWIRNTKHGWITAEYGMLP 67
R++++ ++K A G+ LV++GDT +L+TAT + V + + G +P
Sbjct: 15 RQLTIETSQLAKQANGAVLVRYGDTAVLSTATASKEPKNVDFFPLTVNYEERLYAVGKIP 74
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R GR ++ R+I R +R + Q++ + D +
Sbjct: 75 GGFIKR------EGRPSEKAILASRLIDRPIRPLFADGFRNEVQVVSIVMSVDQDCSSEM 128
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
AA+ G+ +A +G +A + G + G +++ + D+
Sbjct: 129 AAMLGSSLA-------------LSISDIPFEGPIAGATVGRINGEFVINPTVEQQEQSDM 175
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
T I V+ A++ ++ + D I LI Q++++
Sbjct: 176 HLVVAGTKD-AINMVEAGADQVP--EETMLEAIMFGHDEIKRLIAFQEEIV 223
>gi|325124334|gb|ADY83857.1| polynucleotide phosphorylase/polyadenylase [Acinetobacter
calcoaceticus PHEA-2]
Length = 695
Score = 146 bits (369), Expect = 2e-33, Method: Composition-based stats.
Identities = 49/239 (20%), Positives = 88/239 (36%), Gaps = 10/239 (4%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R+ GR +R I + V A GS L G+T L T TL + +T G T
Sbjct: 315 RIDGRDTKTVRAIDVQVGVLDRAHGSALFTRGETQALVTTTLGNTRDALMVDTLAGTKTD 374
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
+ + V R R+ R +++V+ + I I D+ ++
Sbjct: 375 NFMLHYNFPAYSVGETGRESGPKRREIGHGRLARRGVQAVLPAADRFPYVIRIVSDITES 434
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
+G + A++ GA ++L D ++ + V +G A+ + E
Sbjct: 435 NGSSSMASVCGASLSLMDAGVPLKAPVAGIAMGLVKEGERFAVLSD---------ILGDE 485
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
D D+D + +G I +Q + +++ LN A ++ VIS
Sbjct: 486 DHLGDMDFKVAGSANG-ITALQMDIKIEGITEEIMEVALNQAFAGRMHILNEMNKVISR 543
Score = 88.4 bits (217), Expect = 8e-16, Method: Composition-based stats.
Identities = 38/228 (16%), Positives = 73/228 (32%), Gaps = 28/228 (12%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----HGWITAEYGMLPR 68
+ L V++ A + L+ G +L + K + G +P
Sbjct: 16 VVLETGRVARQAN-TVLITMGGVTVLVAVVAQPKAKAGQDFFPLTVNYQEKQYAAGRIPG 74
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
G R GR I R+I R +R + Q+ A
Sbjct: 75 GYGKR------EGRASEAETLISRLIDRPIRPLFPEGYFNEIQVTATVVSSDKTMDADIA 128
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+ G AL +G + G++ G +++ ++ + D+D
Sbjct: 129 AMLGTSAALSIAGT-------------PFRGPIGGARVGLINGEYVLNPNFEQLKESDLD 175
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
T+S ++ V+ A+ S+D + D + I+ K+
Sbjct: 176 LVVAGTES-AVLMVESEAKE--LSEDQMLGAVLFGHDEMQIAIQAIKE 220
>gi|229012990|ref|ZP_04170155.1| Polyribonucleotide nucleotidyltransferase [Bacillus mycoides DSM
2048]
gi|228748244|gb|EEL98104.1| Polyribonucleotide nucleotidyltransferase [Bacillus mycoides DSM
2048]
Length = 717
Score = 146 bits (369), Expect = 2e-33, Method: Composition-based stats.
Identities = 44/244 (18%), Positives = 85/244 (34%), Gaps = 18/244 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56
+R GR+ +++R ++ + GS L G T L+ T + ++ + +
Sbjct: 315 IRPDGRKGDEIRPLASEVGILSRTHGSGLFTRGQTQALSICTLGALGDVQILDGLGVEES 374
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y S G R+ G RAL V+ + +
Sbjct: 375 KRFMHHYNFPSFSVGETRPMRGPGRREIGHGALG----ERALEPVLPSEKDFPYTVRLVS 430
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V++++G T A+I G+ +A+ D ++ + V G + D
Sbjct: 431 EVLESNGSTSQASICGSTLAMMDAGVPLKAPVAGIAMGLVKSGE---------HYTILTD 481
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T G + +Q + S++ L AK ++
Sbjct: 482 IQGMEDHLGDMDFKVAGTAKG-VTALQMDIKIDGLSREILEEALQQAKVGRMHILNHMLS 540
Query: 237 VISN 240
VI+
Sbjct: 541 VIAE 544
Score = 114 bits (286), Expect = 9e-24, Method: Composition-based stats.
Identities = 43/231 (18%), Positives = 89/231 (38%), Gaps = 26/231 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATL---EEKVPMWIRNTKHGWITAEYGMLP 67
R++++ ++K A G+ LV++GDT +L+TAT + V + + G +P
Sbjct: 15 RQLTIETSQLAKQANGAVLVRYGDTAVLSTATASKEPKNVDFFPLTVNYEERLYAVGKIP 74
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R GR ++ R+I R +R + Q++ + D +
Sbjct: 75 GGFIKR------EGRPSEKAILASRLIDRPIRPLFADGFRNEVQVVSIVMSVDQDCSSEM 128
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
AA+ G+ +A +G +A + G + G +++ + D+
Sbjct: 129 AAMLGSSLA-------------LSISDIPFEGPIAGATVGRINGEFVINPTVEQQEQSDM 175
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
T I V+ A++ ++ + D I LI Q++++
Sbjct: 176 HLVVAGTKD-AINMVEAGADQVP--EETMLEAIMFGHDEIKRLIAFQEEIV 223
>gi|119774103|ref|YP_926843.1| polynucleotide phosphorylase/polyadenylase [Shewanella amazonensis
SB2B]
gi|187611289|sp|A1S467|PNP_SHEAM RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|119766603|gb|ABL99173.1| Polyribonucleotide nucleotidyltransferase [Shewanella amazonensis
SB2B]
Length = 699
Score = 146 bits (369), Expect = 2e-33, Method: Composition-based stats.
Identities = 40/239 (16%), Positives = 87/239 (36%), Gaps = 10/239 (4%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R+ GR+ + +R +S+ V GS L G+T L T TL + ++ G T
Sbjct: 314 RIDGREPDMIRALSVMAGVLPRTHGSALFTRGETQALVTCTLGTERDAQKIDSIMGERTN 373
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
+ + V + G R ++ R + +V+ + + + ++ ++
Sbjct: 374 RFMLHYNFPPYSVGETGMVGSPKRREIGHGKLAWRGINAVMPSAEEFPYSVRVVSEITES 433
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
+G + A++ G +AL D ++ + V +G + + E
Sbjct: 434 NGSSSMASVCGTSLALMDAGVPIKTSVAGIAMGLVKEGDNFVVLSD---------ILGDE 484
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
D D+D T G + +Q + +++ L A ++ + I +
Sbjct: 485 DHLGDMDFKVAGTRDG-VTALQMDIKIEGITKEIMEIALQQAYGARVHILNVMDQAIGS 542
Score = 101 bits (252), Expect = 6e-20, Method: Composition-based stats.
Identities = 37/228 (16%), Positives = 76/228 (33%), Gaps = 27/228 (11%)
Query: 14 ISLTRRV-SKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----HGWITAEYGMLPR 68
++L V ++ A+G+ + GDT +L T +++ + T G +P
Sbjct: 15 VTLETGVIARQADGAVMASMGDTTVLVTVVGKKEADPGRDFFPLTVNYQEKTYAAGKIPG 74
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
R GR I R+I R +R + Q+II +
Sbjct: 75 GFFKR------EGRPSEDETLIARLIDRPIRPLFPDDFTNEVQVIITVVSVDPQIEPDIV 128
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
++ G A G + A G + G +++ E + ++D
Sbjct: 129 SMIGTSAA-------------LAISGIPFNGPLGAARVGYVNGEYVLNPGAAELAGSELD 175
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
T S ++ V+ A+ + ++ + D+ +I +
Sbjct: 176 LVVAGTQS-AVLMVESEAK--SLPEEVMLGAVVYGHDQQQVVINAINE 220
>gi|86608913|ref|YP_477675.1| polynucleotide phosphorylase/polyadenylase [Synechococcus sp.
JA-2-3B'a(2-13)]
gi|123502399|sp|Q2JLJ5|PNP_SYNJB RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|86557455|gb|ABD02412.1| polyribonucleotide nucleotidyltransferase [Synechococcus sp.
JA-2-3B'a(2-13)]
Length = 712
Score = 146 bits (369), Expect = 2e-33, Method: Composition-based stats.
Identities = 41/243 (16%), Positives = 86/243 (35%), Gaps = 18/243 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56
+R+ GR+ +++R +S + GS L G T +L+ T + + +
Sbjct: 321 VRVDGRKLDEVRPVSCRVGLIPRVHGSALFNRGLTQVLSITTLGTPGDAQELDDLHPVDE 380
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y S G + R+ G RAL V+ + +
Sbjct: 381 KRYMHHYNFPGFSVGETRPSRSPGRREIGHGAL----AERALVPVLPKEEEFPYVVRVVS 436
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V+ ++G T ++ G+ ++L D ++ + + + +G + D
Sbjct: 437 EVLSSNGSTSMGSVCGSTLSLMDAGVPIKAPVSGVAMGLIKEGDEV---------RILTD 487
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T +G I +Q + + D + AK ++ +
Sbjct: 488 IQGIEDFLGDMDFKVAGTRAG-ITALQMDMKITGITVDVVEQAIRQAKAGREFILDKMLE 546
Query: 237 VIS 239
I+
Sbjct: 547 TIA 549
Score = 100 bits (248), Expect = 2e-19, Method: Composition-based stats.
Identities = 46/233 (19%), Positives = 82/233 (35%), Gaps = 26/233 (11%)
Query: 12 REISLTRRV-SKYAEGSCLVKFGDTHLLTTAT---LEEKVPMWIRNTKHGWITAEYGMLP 67
REI + + + A + G+T +L TAT V + G +P
Sbjct: 13 REIDINIGLMAPQAGCGVWLTSGETSILVTATRQPGRPGVDFMPLLVDYEERLYAAGRIP 72
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R GR R+ I R+I R +R + Q++ +
Sbjct: 73 GGYLRR------EGRPPERATLISRLIDRPIRPLFPEWLRDDVQVVATTLSVDDTVPPDV 126
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
I GA +A+H G VAA+ G++ I++ Y E D+
Sbjct: 127 LCILGASLAIHGARI-------------PFNGPVAAVRVGLVKDEFILNPTYAEIEAGDL 173
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
D G ++ V+ A + + + + I +L+K Q+ V+++
Sbjct: 174 DLVVAGCADG-VIMVEAGANQ--LPEKDVVEAIEFGFEAIQELLKAQQQVLAD 223
>gi|160883669|ref|ZP_02064672.1| hypothetical protein BACOVA_01641 [Bacteroides ovatus ATCC 8483]
gi|156111082|gb|EDO12827.1| hypothetical protein BACOVA_01641 [Bacteroides ovatus ATCC 8483]
Length = 752
Score = 146 bits (369), Expect = 2e-33, Method: Composition-based stats.
Identities = 49/243 (20%), Positives = 87/243 (35%), Gaps = 18/243 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHG 57
RL GR+ ++R I GS + G+T LT+ T L+EK+ +
Sbjct: 363 RLDGRKTTEIRPIWCEVGPLPGPHGSAIFTRGETQSLTSVTLGTKLDEKIIDDVLEHGKE 422
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P STG + V R+ G RAL+ + + + D
Sbjct: 423 RFLLHYNFPPFSTGEAKAQRGVGRREIGHGHL----AWRALKGQIPADY--PYVVRVVSD 476
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+++++G + A + +AL D ++ + + + G + D+
Sbjct: 477 ILESNGSSSMATVCAGTLALMDAGVKIKKPVSGIAMGLIKN-------PGEEKYAVLSDI 529
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T G I Q + S + LN AK+ ++ +
Sbjct: 530 LGDEDHLGDMDFKVTGTKDG-ITATQMDIKVDGLSYEILERALNQAKEGRMHILGKITET 588
Query: 238 ISN 240
I+
Sbjct: 589 IAE 591
Score = 107 bits (266), Expect = 2e-21, Method: Composition-based stats.
Identities = 39/241 (16%), Positives = 76/241 (31%), Gaps = 26/241 (10%)
Query: 3 LSGRQENQMREISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
GR I+L ++K A+GS +++ G+T LL T +
Sbjct: 56 PDGRT------ITLETGKLAKQADGSVMLRMGNTMLLATVCAAKDAVPGTDFMPLQVEYK 109
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
E GR R++ RALR + +
Sbjct: 110 EKFAAFGRFP--GGFTKREGRASDYEILTCRLVDRALRPLFPDNYHAEVY---------- 157
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
+ V + D L + + G ++ + + G +++ + +
Sbjct: 158 ---VNIILFSADGVDMPDALAGLAASAALAVSDIPFNGPISEVRVARIDGQFVINPTFEQ 214
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
D+D T +I+ V+ E S+ + +A + I K Q + ++ E
Sbjct: 215 LEKADMDLMVAATYE-NIMMVE--GEMHEVSEAELLEAMKVAHEAIKVHCKAQME-LTEE 270
Query: 242 V 242
V
Sbjct: 271 V 271
>gi|304404299|ref|ZP_07385961.1| polyribonucleotide nucleotidyltransferase [Paenibacillus
curdlanolyticus YK9]
gi|304347277|gb|EFM13109.1| polyribonucleotide nucleotidyltransferase [Paenibacillus
curdlanolyticus YK9]
Length = 701
Score = 146 bits (369), Expect = 2e-33, Method: Composition-based stats.
Identities = 44/244 (18%), Positives = 82/244 (33%), Gaps = 18/244 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56
+R GR N++R I + GS L G T L+ T + ++ I +
Sbjct: 313 VRPDGRGLNEIRPIDCDVALLPRTHGSGLFTRGQTQALSICTLGALGDVQILDGISPEES 372
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P S G R+ G RAL V+ + I +
Sbjct: 373 KRFMHHYNFPPFSVGEARPLRPPGRREIGHGALG----ERALSKVIPPESEFPYTIRLVS 428
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+ ++++G T A+I + +A+ D ++ + + G +I
Sbjct: 429 ECLESNGSTSQASICASTLAMMDAGVPIKAPVAGIAMGLIKDGEHFSILSD--------- 479
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T G + +Q + + L AK+ ++ +
Sbjct: 480 IQGMEDHLGDMDFKVAGTAEG-VTAIQMDIKIEGIDRAILTQALEQAKEGRMHILGKMLE 538
Query: 237 VISN 240
V+
Sbjct: 539 VMGE 542
Score = 108 bits (268), Expect = 9e-22, Method: Composition-based stats.
Identities = 37/229 (16%), Positives = 77/229 (33%), Gaps = 26/229 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATL---EEKVPMWIRNTKHGWITAEYGMLP 67
R + L ++K A + V++G+T +L T T + + + + G +P
Sbjct: 12 RPLVLETGRLAKQANAAVTVRYGETVVLCTVTASSEPKDLDFFPLTVNYEEKLYAVGKIP 71
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R GR ++ R+ R +R + QI+ + D
Sbjct: 72 GGFIKR------EGRPSEKAILSSRLTDRPIRPLFPDGFRNDVQIVNLVMSVDQDCSPEI 125
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
AA+ G A G + + G + G +++ +++ D+
Sbjct: 126 AAMIGTSAA-------------LSISDVPFNGPIGGVVVGRIDGQFVINPTVEQEAQSDI 172
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
T I+ V+ AE + + D I +++K ++
Sbjct: 173 FVVVAGTKD-AIMMVE--AEADEVPESVMLEAIMFGHDEIKNIVKSIEE 218
>gi|299147541|ref|ZP_07040605.1| polyribonucleotide nucleotidyltransferase [Bacteroides sp. 3_1_23]
gi|298514328|gb|EFI38213.1| polyribonucleotide nucleotidyltransferase [Bacteroides sp. 3_1_23]
Length = 752
Score = 146 bits (369), Expect = 2e-33, Method: Composition-based stats.
Identities = 49/243 (20%), Positives = 87/243 (35%), Gaps = 18/243 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHG 57
RL GR+ ++R I GS + G+T LT+ T L+EK+ +
Sbjct: 363 RLDGRKTTEIRPIWCEVGPLPGPHGSAIFTRGETQSLTSVTLGTKLDEKIIDDVLEHGKE 422
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P STG + V R+ G RAL+ + + + D
Sbjct: 423 RFLLHYNFPPFSTGEAKAQRGVGRREIGHGHL----AWRALKGQIPADY--PYVVRVVSD 476
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+++++G + A + +AL D ++ + + + G + D+
Sbjct: 477 ILESNGSSSMATVCAGTLALMDAGVKIKKPVSGIAMGLIKN-------PGEEKYAVLSDI 529
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T G I Q + S + LN AK+ ++ +
Sbjct: 530 LGDEDHLGDMDFKVTGTKDG-ITATQMDIKVDGLSYEILERALNQAKEGRMHILGKITET 588
Query: 238 ISN 240
I+
Sbjct: 589 IAE 591
Score = 106 bits (263), Expect = 4e-21, Method: Composition-based stats.
Identities = 39/241 (16%), Positives = 76/241 (31%), Gaps = 26/241 (10%)
Query: 3 LSGRQENQMREISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
GR I+L ++K A+GS +++ G+T LL T +
Sbjct: 56 PDGRT------ITLETGKLAKQADGSVMLRMGNTMLLATVCAAKDAVPGTDFMPLQVEYK 109
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
E GR R++ RALR + +
Sbjct: 110 EKFAAFGRFP--GGFTKREGRASDYEILTCRLVDRALRPLFPDNYHAEVY---------- 157
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
+ V + D L + + G ++ + + G +++ + +
Sbjct: 158 ---VNIILFSADGVDMPDALAGLAASAALAVSDIPFNGPISEVRVARIDGQFVINPTFEQ 214
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
D+D T +I+ V+ E S+ + +A + I K Q + ++ E
Sbjct: 215 LEKADMDLMVAATYE-NIMMVE--GEMHEVSEAELLEAMKVAHEAIKIHCKAQME-LTEE 270
Query: 242 V 242
V
Sbjct: 271 V 271
>gi|255693073|ref|ZP_05416748.1| polyribonucleotide nucleotidyltransferase [Bacteroides finegoldii
DSM 17565]
gi|260621113|gb|EEX43984.1| polyribonucleotide nucleotidyltransferase [Bacteroides finegoldii
DSM 17565]
Length = 708
Score = 146 bits (369), Expect = 2e-33, Method: Composition-based stats.
Identities = 49/243 (20%), Positives = 87/243 (35%), Gaps = 18/243 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
RL GR+ ++R I GS + G+T LT+ TL +EK+ +
Sbjct: 319 RLDGRKTTEIRPIWCEVGPLPGPHGSAIFTRGETQSLTSVTLGTKMDEKIIDDVLEHGKE 378
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P STG + V R+ G RAL+ + + + D
Sbjct: 379 RFLLHYNFPPFSTGEAKAQRGVGRREIGHGHL----AWRALKGQIPADY--PYVVRVVSD 432
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+++++G + A + +AL D ++ + + + G + D+
Sbjct: 433 ILESNGSSSMATVCAGTLALMDAGVKIKKPVSGIAMGLIKN-------PGEEKYAVLSDI 485
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T G I Q + S + LN AK+ ++ +
Sbjct: 486 LGDEDHLGDMDFKVTGTKDG-ITATQMDIKVDGLSYEILERALNQAKEGRMHILNKITET 544
Query: 238 ISN 240
I+
Sbjct: 545 IAE 547
Score = 102 bits (254), Expect = 4e-20, Method: Composition-based stats.
Identities = 36/228 (15%), Positives = 71/228 (31%), Gaps = 19/228 (8%)
Query: 10 QMREISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPR 68
R I+L ++K A+GS +++ G+T LL T + E
Sbjct: 13 DGRTITLETGKLAKQADGSVMLRMGNTMLLATVCAAKDAVPGTDFMPLQVEYKEKFAAFG 72
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
GR R++ RALR + +
Sbjct: 73 RFP--GGFTKREGRASDYEILTCRLVDRALRPLFPDNYHAEVY-------------VNII 117
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
+ V + D L + + G ++ + + G +++ + + D+D
Sbjct: 118 LFSADGVDMPDALAGLAASAALAVSDIPFNGPISEVRVARIDGQFVINPTFEQLEKADMD 177
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
T +I+ V+ E S+ + +A + I K Q +
Sbjct: 178 LMVAATYE-NIMMVE--GEMQEVSEAELLEAMKVAHEAIKIHCKAQME 222
>gi|225871265|ref|YP_002747212.1| polyribonucleotide nucleotidyltransferase [Streptococcus equi
subsp. equi 4047]
gi|254782736|sp|C0M913|PNP_STRE4 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|225700669|emb|CAW95251.1| polyribonucleotide nucleotidyltransferase [Streptococcus equi
subsp. equi 4047]
Length = 714
Score = 146 bits (369), Expect = 2e-33, Method: Composition-based stats.
Identities = 42/244 (17%), Positives = 81/244 (33%), Gaps = 18/244 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56
+R GR+ +++R ++ GS L G T L+ T + ++ +
Sbjct: 317 VRPDGRRVDEIRPLAAEIDFLPRVHGSGLFTRGQTQALSVLTLAPMGDTQIIDGLEPEYK 376
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y S G + A R+ G RAL V+ I +
Sbjct: 377 KRFLHHYNFPQYSVGETGRYGAAGRREIGHGALG----ERALAQVLPSLEAFPYAIRLVA 432
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V++++G + A+I +AL ++ + + + D
Sbjct: 433 EVLESNGSSSQASICAGTLALMAAGVPIKAPVAGIAMGLISD---------GTNYTVLTD 483
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T G I +Q + + L AK +++ L +
Sbjct: 484 IQGLEDHFGDMDFKVAGTRQG-ITALQMDIKIEGITPQILEEALAQAKKARFEILDLIEA 542
Query: 237 VISN 240
I+
Sbjct: 543 TIAE 546
Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats.
Identities = 40/231 (17%), Positives = 81/231 (35%), Gaps = 26/231 (11%)
Query: 13 EISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKV---PMWIRNTKHGWITAEYGMLPR 68
+ + V+K A G+ +V++G++ +LT A + +K+ + + G P
Sbjct: 14 PLVVEVGQVAKRANGATVVRYGESTVLTAAVMSKKMSTGDFFPLQVNYEEKMYAAGKFPG 73
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
R GR + R+I R +R + Q+I D A
Sbjct: 74 GWMKR------EGRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDEDASAPMA 127
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+ G+ +A G +A + + G I++ D + ++
Sbjct: 128 AMLGSSLA-------------LSISDIPFNGPIAGVQVAYVEGEFIINPDKAQQEASLLE 174
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
T I V+ A+ + L + I +LI Q+++++
Sbjct: 175 LTVAGTKD-AINMVESGAKE--LPEAIMLEALLVGHKAIQELIAFQEEIVA 222
>gi|238797549|ref|ZP_04641046.1| hypothetical protein ymoll0001_5180 [Yersinia mollaretii ATCC
43969]
gi|238718546|gb|EEQ10365.1| hypothetical protein ymoll0001_5180 [Yersinia mollaretii ATCC
43969]
Length = 706
Score = 146 bits (369), Expect = 2e-33, Method: Composition-based stats.
Identities = 43/242 (17%), Positives = 90/242 (37%), Gaps = 18/242 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR+++ +R + + V GS L G+T L TATL + + + +
Sbjct: 315 RIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQNIDELMGERTD 374
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P G + R+ G + R + +V+ + + + +
Sbjct: 375 SFLLHYNFPPYCVGETGMVGSPKRREIGHGRL----AKRGVLAVMPSPSEFPYTVRVVSE 430
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ GA +AL D ++ + V + + +
Sbjct: 431 ITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKENENFVVLSD---------I 481
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D + G I +Q + +++ LN AK ++ + +
Sbjct: 482 LGDEDHLGDMDFKVAGSRDG-ITALQMDIKIEGITREIMQVALNQAKGARLHILGVMEQA 540
Query: 238 IS 239
IS
Sbjct: 541 IS 542
Score = 93.4 bits (230), Expect = 3e-17, Method: Composition-based stats.
Identities = 37/232 (15%), Positives = 77/232 (33%), Gaps = 27/232 (11%)
Query: 14 ISLTRRV-SKYAEGSCLVKFGDTHLLTTATLEEKVPM----WIRNTKHGWITAEYGMLPR 68
+++ + ++ A + +V DT + T ++K + + T G +P
Sbjct: 16 VTIETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQSFFPLTVNYQERTYAAGRIPG 75
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
S R GR R+I R +R + S L Q+I +
Sbjct: 76 SFFRR------EGRPSEGETLTSRLIDRPIRPLFPDSFLNEVQVIATVVSVNPQVNPDIV 129
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+ GA A G + A G + +++ E +D
Sbjct: 130 ALIGASAA-------------LSLSGIPFNGPIGAARVGFINDQYVLNPTTDELKESRLD 176
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
T +G ++ V+ A+ S+D + ++ +I+ +++
Sbjct: 177 LVVAGT-AGAVLMVESEADI--LSEDQMLGAVVFGHEQQQVVIENINALVAE 225
>gi|149276240|ref|ZP_01882384.1| polynucleotide phosphorylase/polyadenylase [Pedobacter sp. BAL39]
gi|149232760|gb|EDM38135.1| polynucleotide phosphorylase/polyadenylase [Pedobacter sp. BAL39]
Length = 715
Score = 146 bits (369), Expect = 2e-33, Method: Composition-based stats.
Identities = 50/243 (20%), Positives = 85/243 (34%), Gaps = 16/243 (6%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
+RL GR +R I A GS + G+T LTT TL +E++ +
Sbjct: 316 IRLDGRDVRTVRPIWSEVGYLPSAHGSAVFTRGETQSLTTVTLGSKDDEQMIDGAFINGY 375
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y STG R+ G R+L+ V+ I I
Sbjct: 376 NKFLLHYNFPGFSTGEVRPNRGAGRREIGHGNL----AMRSLKKVLPGIEENPYTIRIVS 431
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
D+++++G + A + +AL D ++ + + + + D
Sbjct: 432 DILESNGSSSMATVCAGTLALMDAGIKIKAPVSGIAMGLITDEKTG-------KYAILSD 484
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T+ G IV Q + + LN AK+ ++ K
Sbjct: 485 ILGDEDHLGDMDFKVTGTEKG-IVACQMDLKINGLKWEVLTNALNQAKEARLHILNEMKK 543
Query: 237 VIS 239
I+
Sbjct: 544 TIA 546
Score = 109 bits (271), Expect = 4e-22, Method: Composition-based stats.
Identities = 43/235 (18%), Positives = 80/235 (34%), Gaps = 27/235 (11%)
Query: 7 QENQMREISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITA 61
R I + ++K A+GS +V+ GDT LL T + V + + A
Sbjct: 9 DLGDGRTIEIETGKLAKQADGSVVVRMGDTMLLATVVSTVGAKSGVDFLPLSVDYQEKYA 68
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
G +P R R I R++ RALR + Q++I
Sbjct: 69 AAGRIPGGFLRR------EARLSDYEVLISRLVDRALRPMFPEDYHSDTQVMITL----- 117
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
I+ + DCL + + G ++ + + G +++ +
Sbjct: 118 --------ISSDKNIMPDCLAGLAASAAIAVSDIPFNGPISEVRVAKIDGQFVINPYVSD 169
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
++ T++ IV V+ E S+ + A I ++ QK+
Sbjct: 170 LERATMEFLVAGTEND-IVMVE--GEADEISESDMVEAIEFAHKAIVVQVQAQKE 221
>gi|301168382|emb|CBW27972.1| putative ribonuclease [Bacteriovorax marinus SJ]
Length = 234
Score = 146 bits (369), Expect = 2e-33, Method: Composition-based stats.
Identities = 106/231 (45%), Positives = 148/231 (64%), Gaps = 5/231 (2%)
Query: 10 QMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRS 69
Q R+I T ++ YA GS + +FG+T + TAT+EE VP ++++ GWITAEY MLP S
Sbjct: 8 QPRDIKFTAGINPYAAGSVIAEFGNTKVHITATVEESVPRFLKDKGQGWITAEYSMLPSS 67
Query: 70 TGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAA 129
T R +R + GR+QEIQR+IGR+LR+++DL LG R I IDCDV+ ADGGTRT +
Sbjct: 68 THTRNRR--ERSKVSGRTQEIQRLIGRSLRAIIDLEKLGERSIQIDCDVLVADGGTRTTS 125
Query: 130 ITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC-GYPIVDLDYGEDSTIDVD 188
I+GA+VAL ++ + + +K +AA+S G+ G I DL+Y EDST + D
Sbjct: 126 ISGAYVALEMAVEKLLES--GLIEETPIKEPLAALSVGINSAGKVIADLNYDEDSTCETD 183
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
N VMT SG +EVQG+AE FS+D A+L A + I + K Q+ V+S
Sbjct: 184 MNIVMTKSGKFIEVQGTAEGEAFSRDELNAILECATEAIQSVFKEQEKVLS 234
>gi|254479649|ref|ZP_05092951.1| ribonuclease PH [Carboxydibrachium pacificum DSM 12653]
gi|214034420|gb|EEB75192.1| ribonuclease PH [Carboxydibrachium pacificum DSM 12653]
Length = 229
Score = 146 bits (369), Expect = 2e-33, Method: Composition-based stats.
Identities = 107/209 (51%), Positives = 145/209 (69%), Gaps = 2/209 (0%)
Query: 32 FGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQ 91
G+T ++ TA++E+KVP + + T GWIT+EYGMLPR+T R RE GR GR+ EIQ
Sbjct: 1 MGETKVICTASIEDKVPPFQKGTGKGWITSEYGMLPRATEVRNPREVTKGRPSGRTMEIQ 60
Query: 92 RMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKF 151
R+IGR+LR+VVDL ALG R I IDCDVIQADGGTRTA+ITG+++AL D L + +
Sbjct: 61 RLIGRSLRAVVDLEALGERTIWIDCDVIQADGGTRTASITGSFIALADALNKLVEK--GE 118
Query: 152 QLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATF 211
LK VAA+S G++ G ++DL + ED+ VD N VMTD G IVE+QG+ E F
Sbjct: 119 LQKIPLKSFVAAVSVGIVEGNKLLDLSFQEDANALVDMNVVMTDKGEIVEIQGTGEGGPF 178
Query: 212 SQDHFFAMLNLAKDRIADLIKLQKDVISN 240
S+ +F +L+LA I +IK+QK+V+S+
Sbjct: 179 SRQNFEELLDLAAHGIEQIIKIQKEVLSD 207
>gi|293610159|ref|ZP_06692460.1| conserved hypothetical protein [Acinetobacter sp. SH024]
gi|292827391|gb|EFF85755.1| conserved hypothetical protein [Acinetobacter sp. SH024]
Length = 697
Score = 146 bits (369), Expect = 2e-33, Method: Composition-based stats.
Identities = 49/239 (20%), Positives = 88/239 (36%), Gaps = 10/239 (4%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R+ GR +R I + V A GS L G+T L T TL + +T G T
Sbjct: 317 RIDGRDTKTVRAIDVQVGVLDRAHGSALFTRGETQALVTTTLGNTRDALMVDTLAGTKTD 376
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
+ + V R R+ R +++V+ + I I D+ ++
Sbjct: 377 NFMLHYNFPAYSVGETGRESGPKRREIGHGRLARRGVQAVLPAADRFPYVIRIVSDITES 436
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
+G + A++ GA ++L D ++ + V +G A+ + E
Sbjct: 437 NGSSSMASVCGASLSLMDAGVPLKAPVAGIAMGLVKEGERFAVLSD---------ILGDE 487
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
D D+D + +G I +Q + +++ LN A ++ VIS
Sbjct: 488 DHLGDMDFKVAGSANG-ITALQMDIKIEGITEEIMEVALNQAFAGRMHILNEMNKVISR 545
Score = 88.4 bits (217), Expect = 9e-16, Method: Composition-based stats.
Identities = 38/228 (16%), Positives = 73/228 (32%), Gaps = 28/228 (12%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----HGWITAEYGMLPR 68
+ L V++ A + L+ G +L + K + G +P
Sbjct: 18 VVLETGRVARQAN-TVLITMGGVTVLVAVVAQPKAKAGQDFFPLTVNYQEKQYAAGRIPG 76
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
G R GR I R+I R +R + Q+ A
Sbjct: 77 GYGKR------EGRASEAETLISRLIDRPIRPLFPEGYFNEIQVTATVVSSDKTMDADIA 130
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+ G AL +G + G++ G +++ ++ + D+D
Sbjct: 131 AMLGTSAALSIAGT-------------PFRGPIGGARVGLINGEYVLNPNFEQLKESDLD 177
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
T+S ++ V+ A+ S+D + D + I+ K+
Sbjct: 178 LVVAGTES-AVLMVESEAKE--LSEDQMLGAVLFGHDEMQIAIQAIKE 222
>gi|238761771|ref|ZP_04622745.1| hypothetical protein ykris0001_12970 [Yersinia kristensenii ATCC
33638]
gi|238699885|gb|EEP92628.1| hypothetical protein ykris0001_12970 [Yersinia kristensenii ATCC
33638]
Length = 706
Score = 146 bits (369), Expect = 2e-33, Method: Composition-based stats.
Identities = 43/242 (17%), Positives = 90/242 (37%), Gaps = 18/242 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR+++ +R + + V GS L G+T L TATL + + + +
Sbjct: 315 RIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQNIDELMGERTD 374
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P G + R+ G + R + +V+ + + + +
Sbjct: 375 SFLLHYNFPPYCVGETGMVGSPKRREIGHGRL----AKRGVLAVMPSPSEFPYTVRVVSE 430
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ GA +AL D ++ + V + + +
Sbjct: 431 ITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEDENFVVLSD---------I 481
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D + G I +Q + +++ LN AK ++ + +
Sbjct: 482 LGDEDHLGDMDFKVAGSRDG-ITALQMDIKIEGITREIMQVALNQAKGARLHILGVMEQA 540
Query: 238 IS 239
IS
Sbjct: 541 IS 542
Score = 91.4 bits (225), Expect = 9e-17, Method: Composition-based stats.
Identities = 36/232 (15%), Positives = 76/232 (32%), Gaps = 27/232 (11%)
Query: 14 ISLTRRV-SKYAEGSCLVKFGDTHLLTTATLEEKVPM----WIRNTKHGWITAEYGMLPR 68
+++ + ++ A + +V DT + T ++K + + T G +P
Sbjct: 16 VTIETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQSFFPLTVNYQERTYAAGRIPG 75
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
S R GR R+I R +R + S L Q+I +
Sbjct: 76 SFFRR------EGRPSEGETLTSRLIDRPIRPLFPDSFLNEVQVIATVVSVNPQVNPDIV 129
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+ GA A G + A G + +++ E +D
Sbjct: 130 ALIGASAA-------------LSLSGIPFNGPIGAARVGFINDQYVLNPTTDELKESRLD 176
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
T + ++ V+ A+ S+D + ++ +I+ +++
Sbjct: 177 LVVAGTAA-AVLMVESEAQI--LSEDQMLGAVVFGHEQQQVVIENINALVAE 225
>gi|220909628|ref|YP_002484939.1| polynucleotide phosphorylase/polyadenylase [Cyanothece sp. PCC
7425]
gi|254782716|sp|B8HXN3|PNP_CYAP4 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|219866239|gb|ACL46578.1| Polyribonucleotide nucleotidyltransferase [Cyanothece sp. PCC 7425]
Length = 715
Score = 146 bits (369), Expect = 2e-33, Method: Composition-based stats.
Identities = 47/245 (19%), Positives = 88/245 (35%), Gaps = 19/245 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKY-AEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTK 55
+R+ GR+ +++R IS V GS L G T +L+ T + + + +
Sbjct: 322 VRVDGRKLDEVRPISCLVGVLPRRVHGSALFNRGLTQVLSAVTLGTPGDAQELDDLHPDE 381
Query: 56 HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115
Y P S G + R+ G RAL V+ I +
Sbjct: 382 SKRYLHHYNFPPFSVGETRPMRSPGRREIGHGAL----AERALVPVLPPQDQFPYVIRVV 437
Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIV 175
+V+ ++G T ++ G+ ++L D + + + + +G +
Sbjct: 438 SEVLSSNGSTSMGSVCGSTLSLMDAGVPLTKPVSGAAMGLIKEGDEV---------RILT 488
Query: 176 DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
D+ ED D+D TDSG I +Q + S + AK +++
Sbjct: 489 DIQGIEDFLGDMDFKVAGTDSG-ITALQMDMKITGLSLQVVAEAIQQAKPARMHILEKML 547
Query: 236 DVISN 240
+ +S
Sbjct: 548 ETLSQ 552
Score = 101 bits (251), Expect = 8e-20, Method: Composition-based stats.
Identities = 48/235 (20%), Positives = 91/235 (38%), Gaps = 26/235 (11%)
Query: 10 QMREISLTRR-VSKYAEGSCLVKFGDTHLLTTAT---LEEKVPMWIRNTKHGWITAEYGM 65
R+I +T + A G+ +++ GDT +L TAT E + + G
Sbjct: 11 DGRDIHITIGRFAPQAGGTVMIRSGDTAVLVTATRAAAREGIDFLPLLVDYEERLYAAGR 70
Query: 66 LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125
+P R GR ++ I R+I R LR + Q++ +
Sbjct: 71 IPGGFLRR------EGRPPEKATLISRLIDRPLRPLFPGWLRDDIQVVATTLSMDEQVPP 124
Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185
A+TGA VA+ G +AA+ G++ I++ Y E
Sbjct: 125 DVLAVTGASVAVLLAQI-------------PFNGPMAAVRVGLVGDDFIINPTYSEIEAG 171
Query: 186 DVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
D+D + +G +V V+ A + + ++ + + DLI+ Q+++++
Sbjct: 172 DLDLVVAGSPAG-VVMVEAGANQ--LPEQDVIEAIDFGYEAVRDLIRAQQELLTE 223
>gi|33152626|ref|NP_873979.1| polynucleotide phosphorylase/polyadenylase [Haemophilus ducreyi
35000HP]
gi|81423299|sp|Q7VL91|PNP_HAEDU RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|33148850|gb|AAP96368.1| polyribonucleotide nucleotidyltransferase [Haemophilus ducreyi
35000HP]
Length = 712
Score = 146 bits (369), Expect = 2e-33, Method: Composition-based stats.
Identities = 42/241 (17%), Positives = 88/241 (36%), Gaps = 18/241 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR + +R +++ V GS + G+T L ATL + ++ + K
Sbjct: 314 RIDGRTVDTVRALNICTGVLPRTHGSAIFTRGETQALAVATLGTERDAQIIDELTGEKSD 373
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + R+ G + R + +V+ + + + +
Sbjct: 374 RFLFHYNFPPYSVGETGMIGSPKRREIGHGRL----AKRGVLAVMPSAEEFPYVVRVVSE 429
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ GA +AL D ++ + V + + +
Sbjct: 430 ITESNGSSSMASVCGASLALMDAGVPIKATVAGIAMGLVKEDEKFVVLSD---------I 480
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T G I +Q + + + LN AK ++ + +
Sbjct: 481 LGDEDHLGDMDFKVAGTRKG-ITALQMDIKIEGITPEIMHIALNQAKGARMHILNVMEQA 539
Query: 238 I 238
+
Sbjct: 540 L 540
Score = 90.3 bits (222), Expect = 2e-16, Method: Composition-based stats.
Identities = 34/232 (14%), Positives = 72/232 (31%), Gaps = 27/232 (11%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----HGWITAEYGMLPR 68
++L +++ A + + DT + + +++V + T G +P
Sbjct: 15 VTLETGAIARQATAAVMASMDDTTVFVSVVAKKEVKEGQDFFPLTVNYQERTYAAGRIPG 74
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
R GR I R+I R +R + QI+ +
Sbjct: 75 GFFKR------EGRPSENETLIARLIDRPIRPLFPEGFFNEIQIVATVVSVNPQISPDLV 128
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+ GA A G + A G + +++ E +D
Sbjct: 129 AMIGASAA-------------LSLSGVPFNGPIGAARVGFINDQFVLNPTITEQKQSRLD 175
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
T ++ V+ A+ S++ A + + +I+ K+ +
Sbjct: 176 LVVAGT-DKAVLMVESEADI--LSEEQMLAAVVFGHQQQQIVIENIKEFVKE 224
>gi|317493630|ref|ZP_07952051.1| polyribonucleotide nucleotidyltransferase [Enterobacteriaceae
bacterium 9_2_54FAA]
gi|316918573|gb|EFV39911.1| polyribonucleotide nucleotidyltransferase [Enterobacteriaceae
bacterium 9_2_54FAA]
Length = 704
Score = 146 bits (369), Expect = 2e-33, Method: Composition-based stats.
Identities = 43/242 (17%), Positives = 89/242 (36%), Gaps = 18/242 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVP----MWIRNTKHG 57
R+ GR+++ +R + + V GS L G+T L TATL + + +
Sbjct: 315 RIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTERDAQNIDGLTGEQTD 374
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + R+ G + R + +V+ + + +
Sbjct: 375 RFLLHYNFPPYSVGETGMMGSPKRREIGHGRL----AKRGVLAVMPKQDEFPYTVRVVSE 430
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ GA +AL D ++ + V + + +
Sbjct: 431 ITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEDENFVVLSD---------I 481
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D + G I +Q + +++ LN AK ++ + +
Sbjct: 482 LGDEDHLGDMDFKVAGSREG-ITALQMDIKIEGITREIMQVALNQAKGARLHILGVMEQA 540
Query: 238 IS 239
I+
Sbjct: 541 IN 542
Score = 86.4 bits (212), Expect = 3e-15, Method: Composition-based stats.
Identities = 39/233 (16%), Positives = 76/233 (32%), Gaps = 28/233 (12%)
Query: 14 ISLTRRV-SKYAEGSCLVKFGDTHLLTTATLEEKVP----MWIRNTKHGWITAEYGMLPR 68
++L + ++ A + +V DT + T +K + + T G P
Sbjct: 16 VTLETGMMARQATAAVMVTMDDTAVFVTVVGAKKAKEGQSFFPLTVNYQERTYAAGRFPG 75
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
R GR G I R+I R +R + L Q++ +
Sbjct: 76 GFFRR------EGRPGEGETLIARLIDRPIRPLFPEGFLNEVQVVATVVSVNPQVSPDIV 129
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+ GA A G + A G + +++ E +D
Sbjct: 130 AMIGASAA-------------LSLSGIPFNGPIGAARVGYINDQYVLNPTTDELQESKLD 176
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
T+ G ++ V+ +E S+D + ++ +I+ K ++ E
Sbjct: 177 LVVAGTE-GAVLMVE--SEAQLLSEDQMLGAVVFGHEQQQVVIENIK-ALAAE 225
>gi|238783512|ref|ZP_04627534.1| hypothetical protein yberc0001_8550 [Yersinia bercovieri ATCC
43970]
gi|238715567|gb|EEQ07557.1| hypothetical protein yberc0001_8550 [Yersinia bercovieri ATCC
43970]
Length = 706
Score = 146 bits (368), Expect = 2e-33, Method: Composition-based stats.
Identities = 43/242 (17%), Positives = 90/242 (37%), Gaps = 18/242 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR+++ +R + + V GS L G+T L TATL + + + +
Sbjct: 315 RIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQNIDELMGERTD 374
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P G + R+ G + R + +V+ + + + +
Sbjct: 375 SFLLHYNFPPYCVGETGMVGSPKRREIGHGRL----AKRGVLAVMPSPSEFPYTVRVVSE 430
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ GA +AL D ++ + V + + +
Sbjct: 431 ITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKENENFVVLSD---------I 481
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D + G I +Q + +++ LN AK ++ + +
Sbjct: 482 LGDEDHLGDMDFKVAGSRDG-ITALQMDIKIEGITREIMQVALNQAKGARLHILGVMEQA 540
Query: 238 IS 239
IS
Sbjct: 541 IS 542
Score = 93.4 bits (230), Expect = 3e-17, Method: Composition-based stats.
Identities = 37/232 (15%), Positives = 77/232 (33%), Gaps = 27/232 (11%)
Query: 14 ISLTRRV-SKYAEGSCLVKFGDTHLLTTATLEEKVPM----WIRNTKHGWITAEYGMLPR 68
+++ + ++ A + +V DT + T ++K + + T G +P
Sbjct: 16 VTIETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQSFFPLTVNYQERTYAAGRIPG 75
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
S R GR R+I R +R + S L Q+I +
Sbjct: 76 SFFRR------EGRPSEGETLTSRLIDRPIRPLFPDSFLNEVQVIATVVSVNPQINPDIV 129
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+ GA A G + A G + +++ E +D
Sbjct: 130 ALIGASAA-------------LSLSGIPFNGPIGAARVGFINDQYVLNPTTDELKESRLD 176
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
T +G ++ V+ A+ S+D + ++ +I+ +++
Sbjct: 177 LVVAGT-AGAVLMVESEADI--LSEDQMLGAVVFGHEQQQVVIENINALVAE 225
>gi|116754659|ref|YP_843777.1| exosome complex exonuclease Rrp41 [Methanosaeta thermophila PT]
gi|116666110|gb|ABK15137.1| ribosomal RNA-processing protein RRP41/SKI6 [Methanosaeta
thermophila PT]
Length = 245
Score = 146 bits (368), Expect = 2e-33, Method: Composition-based stats.
Identities = 65/241 (26%), Positives = 104/241 (43%), Gaps = 22/241 (9%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKV-PMWIRNTKHGWI 59
+RL GR+ +++R I + V K A+GSC ++ GD ++ +V P ++ I
Sbjct: 11 IRLDGRRFDELRPIKMEVGVLKRADGSCYMEMGDNKVIAAVYGPREVHPRHLQEVNRAII 70
Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119
Y M S R + RS E+ ++ AL V+ S I I +V+
Sbjct: 71 RYRYNMASFSVEERRRPG-----PDRRSYELSKVSREALEPVILTSYFPKSVIDIFVEVL 125
Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179
QAD GTRTA I A VAL D M V++ + G + G ++D
Sbjct: 126 QADAGTRTAGINAASVALADAGIPMRSL-------------VSSCAAGKVDGQIVLDPMK 172
Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
ED+ D +T +G I +Q ++D F + LAK ++ K+Q+ V+
Sbjct: 173 DEDNFGQADMPIAITPTGEITLLQMDG---ILTRDEFRQAMELAKKGCQEIYKIQRRVLI 229
Query: 240 N 240
Sbjct: 230 E 230
>gi|242240745|ref|YP_002988926.1| polynucleotide phosphorylase/polyadenylase [Dickeya dadantii
Ech703]
gi|242132802|gb|ACS87104.1| Polyribonucleotide nucleotidyltransferase [Dickeya dadantii Ech703]
Length = 722
Score = 146 bits (368), Expect = 2e-33, Method: Composition-based stats.
Identities = 44/242 (18%), Positives = 92/242 (38%), Gaps = 18/242 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR+++ +R + + V GS L G+T L TATL + ++ + +
Sbjct: 331 RIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTERDAQIIDELMGERTD 390
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + R+ G + R + +V+ + + +
Sbjct: 391 RFLLHYNFPPYSVGETGMVGSPKRREIGHGRL----AKRGVLAVMPKPEAFPYTVRVVSE 446
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ GA +AL D ++ + V +G + +
Sbjct: 447 ITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDSYVVLSD---------I 497
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D + G + +Q + +++ LN AK ++ + +
Sbjct: 498 LGDEDHLGDMDFKVAGSREG-VTALQMDIKIEGITREIMQVALNQAKGARLHILGVMEQA 556
Query: 238 IS 239
IS
Sbjct: 557 IS 558
Score = 96.8 bits (239), Expect = 2e-18, Method: Composition-based stats.
Identities = 36/232 (15%), Positives = 74/232 (31%), Gaps = 27/232 (11%)
Query: 14 ISLTRRV-SKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----HGWITAEYGMLPR 68
++L + ++ A + +V DT + T + V + T G +P
Sbjct: 32 VTLETGMMARQATAAVMVSMDDTAVFVTVVGAKHVKPGQDFFPLTVNYQERTYAAGRIPG 91
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
R GR I R+I R +R + Q+I +
Sbjct: 92 GFFRR------EGRPSEGETLISRLIDRPIRPLFPDGFFNEVQVIATVVSVNPQISPDIV 145
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+ GA A G + A G + +++ E +D
Sbjct: 146 AMIGASAA-------------LSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKQSRLD 192
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
T+ G ++ V+ +E ++D + ++ +I+ K +++
Sbjct: 193 LVVAGTE-GAVLMVE--SEADLLTEDQMLGAVVFGHEQQQVVIENIKSLVAE 241
>gi|116515160|ref|YP_802789.1| polynucleotide phosphorylase/polyadenylase [Buchnera aphidicola
str. Cc (Cinara cedri)]
gi|122285444|sp|Q057K3|PNP_BUCCC RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|116257014|gb|ABJ90696.1| polyribonucleotide nucleotidyltransferase [Buchnera aphidicola str.
Cc (Cinara cedri)]
Length = 693
Score = 146 bits (368), Expect = 2e-33, Method: Composition-based stats.
Identities = 43/242 (17%), Positives = 90/242 (37%), Gaps = 18/242 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVP----MWIRNTKH 56
+R+ GR N++R+I + + GS L G+T L +ATL + +
Sbjct: 315 LRIDGRINNEVRKIDVRTGILPRVHGSALFTRGETQALVSATLGTSRDAQNLDDLLGDRT 374
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P S G + R+ G + R+ +V+ I +
Sbjct: 375 DNFLFHYNFPPYSVGEIGIVGSPKRREIGHGKL----AKRSFLAVMPNIEDFPYTIRLVS 430
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
++ +++G + A++ GA +AL D ++ + + + + D
Sbjct: 431 EITESNGSSSMASVCGASLALMDAGVPIKSAIAGIAMGLIKEND---------SYIILSD 481
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D + G I +Q + + + D + L AK ++ + ++
Sbjct: 482 ILGDEDYLGDMDFKVSGSRLG-ITALQMDIKVSGITSDIIRSALYQAKSARLKILDIMEN 540
Query: 237 VI 238
+
Sbjct: 541 TL 542
Score = 89.1 bits (219), Expect = 5e-16, Method: Composition-based stats.
Identities = 44/225 (19%), Positives = 69/225 (30%), Gaps = 27/225 (12%)
Query: 13 EISLTRRV-SKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----HGWITAEYGMLP 67
I L V ++ A S L DT +L T + + + T G +P
Sbjct: 15 NIILETGVIARQATASVLASMDDTTVLITIVSDNTTIPGQKFFPLVVNYQERTYAAGRIP 74
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R GR I R+I R +R + L QII +
Sbjct: 75 GGFFRR------EGRPSENEILISRLIDRPIRPLFPKDFLYEVQIIATVISVNPQINPDI 128
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
+I G+ AL G + A G L I++ + +
Sbjct: 129 ISIIGSSAALC-------------LSGLPFLGPIGAARIGFLNNKYILNPSIEKIKKSSL 175
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
D T + I V+ AE + S+D+ + + LI
Sbjct: 176 DLVVSGTKN-TIFMVE--AEASILSEDNILNAILFGHESQQSLID 217
>gi|259047075|ref|ZP_05737476.1| polyribonucleotide nucleotidyltransferase [Granulicatella adiacens
ATCC 49175]
gi|259036125|gb|EEW37380.1| polyribonucleotide nucleotidyltransferase [Granulicatella adiacens
ATCC 49175]
Length = 703
Score = 146 bits (368), Expect = 2e-33, Method: Composition-based stats.
Identities = 45/244 (18%), Positives = 87/244 (35%), Gaps = 18/244 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56
+R GR+ +++R +S + GS L G T LT+AT E +V + +
Sbjct: 318 VRPDGRKIDEIRPLSSEIDLLPRVHGSGLFTRGQTQALTSATLAPLGEYQVIDGLGIEEG 377
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y S G+ + + R+ G RAL+ V+ I +
Sbjct: 378 KRFIHHYNFPQFSVGSVGRAGSPGRREIGHGALG----ERALKQVIPSPEDFPYTIRLVS 433
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V++++G + A+I +AL ++ + + + D
Sbjct: 434 EVLESNGSSSQASICAGTLALMAAGVPIKAPVAGIAMGLISD---------GTNYTVLTD 484
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T G I +Q + ++ L AK ++++
Sbjct: 485 IQGLEDHLGDMDFKVAGTKDG-ITALQMDIKIQGITEQILREALTQAKKARFEILEELTS 543
Query: 237 VISN 240
I+
Sbjct: 544 TIAE 547
Score = 115 bits (287), Expect = 6e-24, Method: Composition-based stats.
Identities = 42/233 (18%), Positives = 87/233 (37%), Gaps = 26/233 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEK---VPMWIRNTKHGWITAEYGMLP 67
R++ + ++K A G+ LV++GDT +LT A ++ + + G +P
Sbjct: 14 RQLQVEIGQLAKQANGAVLVRYGDTVVLTAAVGTKQAKDTDFFPLTVNYEEKMYAAGKIP 73
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R GR + R+I R +R + QI + +
Sbjct: 74 GGFIKR------EGRPSEHATLTARLIDRPIRPMFAEGFRNEVQITNTVMSVDPNCPPEM 127
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
AA+ G+ +AL G +A + G + G +++ + D+
Sbjct: 128 AAMFGSSLALC-------------ISDIPFDGPIAGVDVGRVNGEYVINPTTEQKDNSDI 174
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
+ + T + I V+ SA+ +++ L + I L+ Q++++
Sbjct: 175 ELSVAGTAT-AINMVESSAKE--VNEEDMLGALLFGHEEIKKLVAFQEEIVRE 224
>gi|189465341|ref|ZP_03014126.1| hypothetical protein BACINT_01689 [Bacteroides intestinalis DSM
17393]
gi|189437615|gb|EDV06600.1| hypothetical protein BACINT_01689 [Bacteroides intestinalis DSM
17393]
Length = 714
Score = 146 bits (368), Expect = 2e-33, Method: Composition-based stats.
Identities = 50/243 (20%), Positives = 87/243 (35%), Gaps = 18/243 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHG 57
RL GR+ +++R I GS + G+T L T T L+EK+ +
Sbjct: 319 RLDGRKTDEIRPIWSEISYLPGPHGSAIFTRGETQSLATVTLGTKLDEKIIDDVLEHGKE 378
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P STG + V R+ G RAL+ + + + D
Sbjct: 379 RFLLHYNFPPFSTGEAKAQRGVGRREIGHGHL----AWRALKGQIPADY--PYVVRVVSD 432
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+++++G + A + +AL D ++ + + + G + D+
Sbjct: 433 ILESNGSSSMATVCAGTLALMDAGVKIKQPVSGIAMGLIKN-------PGEDKYAVLSDI 485
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T +G I Q + S D LN AK+ ++ +
Sbjct: 486 LGDEDHLGDMDFKVTGTKNG-ITATQMDIKVDGLSFDILERALNQAKEGRMHILGKILET 544
Query: 238 ISN 240
I
Sbjct: 545 IQE 547
Score = 104 bits (258), Expect = 1e-20, Method: Composition-based stats.
Identities = 39/245 (15%), Positives = 79/245 (32%), Gaps = 34/245 (13%)
Query: 3 LSGRQENQMREISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----HG 57
GR I+L ++K A+GS +++ G+T LL T + +
Sbjct: 12 PDGRT------ITLETGKLAKQADGSVMLRMGNTMLLATVCAAKDAVPGTDFMPLQVEYK 65
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
+ +G P R GR R++ RALR + + + I
Sbjct: 66 EKFSAFGRFPGGFTKR------EGRASDYEILTCRLVDRALRPLFPDNYHAEVYVNIILY 119
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
L + + G ++ + + G +++
Sbjct: 120 SADGVDMPDA-------------LAGLAASAALAVSDIPFNGPISEVRVARINGEFVINP 166
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
+ + D+D T +I+ V+ E + S+ + A + I + QK+
Sbjct: 167 TFDQLEKADMDLMVGATYE-NIMMVE--GEMSEVSELDLLNAMKAAHEAIKVQCQAQKE- 222
Query: 238 ISNEV 242
++ V
Sbjct: 223 LAEAV 227
>gi|325479584|gb|EGC82680.1| polyribonucleotide nucleotidyltransferase [Anaerococcus prevotii
ACS-065-V-Col13]
Length = 710
Score = 146 bits (368), Expect = 2e-33, Method: Composition-based stats.
Identities = 46/245 (18%), Positives = 89/245 (36%), Gaps = 19/245 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWI-----RNTK 55
+R GR ++R +S + GS L K G T +L+ TL + I R
Sbjct: 311 IRPDGRDLTEIRPLSAEAGLLPRVHGSGLFKRGQTQVLSVVTLGSPADVQIIDGLNREEI 370
Query: 56 HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115
+Y P G+ R+ G + RAL V+ + I +
Sbjct: 371 TKRYMHQYNFPPFCVGDVRPLRGPGRREIGHGRL----AERALVPVLPDESEFPYTIRVV 426
Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIV 175
+V+ ++G + A+I G+ ++L D ++ + + + +I
Sbjct: 427 SEVLSSNGSSSQASICGSTLSLMDAGVPIKKPVAGIAMGLIKEDDSISILTD-------- 478
Query: 176 DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
+ ED D+D T G I +Q + + +++ L A D ++ + +
Sbjct: 479 -IQGLEDHLGDMDFKVAGTRDG-ITALQMDMKISGITREVLEKSLADAHDARMRILDVIE 536
Query: 236 DVISN 240
I +
Sbjct: 537 TAIKS 541
Score = 85.7 bits (210), Expect = 5e-15, Method: Composition-based stats.
Identities = 43/233 (18%), Positives = 74/233 (31%), Gaps = 27/233 (11%)
Query: 13 EISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEK----VPMWIRNTKHGWITAEYGMLP 67
+ +T ++ A G C ++ GDT +L TA EK + + G +P
Sbjct: 14 DFEVTIGKFAEQANGECYIRSGDTSMLVTAVASEKPREGIDFFPLICDFQEKLYAVGKIP 73
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R G+ + I R + R LR + + QII + D
Sbjct: 74 GGFLRR------EGKSSDEATLISRQMDRPLRPLFPENYYNDVQIIATVLSMDEDNLPDP 127
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
GA +A G V A G + I++ + E +
Sbjct: 128 LTTIGASIA-------------LGISDIPFDGPVGACMVGKVGDKLIINPNKEEREKSTL 174
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
+ G I V+ A S+ + LA + I + + +I +
Sbjct: 175 ELTVAG-KKGAINMVEAGANE--LSESDMLEAMLLALEEIGHISDFIQSIIDD 224
>gi|57239082|ref|YP_180218.1| polynucleotide phosphorylase/polyadenylase [Ehrlichia ruminantium
str. Welgevonden]
gi|58579025|ref|YP_197237.1| polynucleotide phosphorylase/polyadenylase [Ehrlichia ruminantium
str. Welgevonden]
gi|81352951|sp|Q5HBH6|PNP_EHRRW RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|57161161|emb|CAH58074.1| polyribonucleotide nucleotidyltransferase [Ehrlichia ruminantium
str. Welgevonden]
gi|58417651|emb|CAI26855.1| Polyribonucleotide nucleotidyltransferase [Ehrlichia ruminantium
str. Welgevonden]
Length = 789
Score = 146 bits (368), Expect = 2e-33, Method: Composition-based stats.
Identities = 51/251 (20%), Positives = 91/251 (36%), Gaps = 25/251 (9%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR N +R+I + V GS L G+T L L +E++ + +
Sbjct: 323 RIDGRAFNGIRDIEIEIDVLPKTHGSALFTRGNTQALVVTALGTPQDEQIVDDLDGDRRE 382
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P + G A R+ G + +A+R V+ + I + +
Sbjct: 383 NFLLHYNFPPYAVGESAALRAPGRREIGHGKL----AWKAIRYVLPEKSDFPYTIRVVSE 438
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ ++DG + A + GA +AL D ++ + + +G I +
Sbjct: 439 ITESDGSSSMATVCGASLALMDTGVPIKAPVAGIAMGLIKEGEKFIILSD---------I 489
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ--- 234
ED D+D T SG I +Q + + S + L AKD ++
Sbjct: 490 LGDEDHLGDMDFKVAGTSSG-ITALQMDMKISGISIEVIEKSLLQAKDGRMHILDKMNLV 548
Query: 235 ----KDVISNE 241
++ I N
Sbjct: 549 IQESRECIKNH 559
Score = 78.0 bits (190), Expect = 1e-12, Method: Composition-based stats.
Identities = 33/227 (14%), Positives = 72/227 (31%), Gaps = 24/227 (10%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLE---EKVPMWIRNTKHGWITAEYGMLPRS 69
+ L +++ A G+ +V +G T +L+T E V + + G +P
Sbjct: 16 LVLESGKIARQANGAVVVTYGGTTVLSTVVAGKAKEPVDFLPLTVQFVAKSYAVGKIPGG 75
Query: 70 TGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAA 129
R G+ R I R+I R++R + I+ + A
Sbjct: 76 FLKR------EGKPSDRETLISRLIDRSIRPLFPSGFYDEVSIVCNLLSYDTVTPPEVTA 129
Query: 130 ITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDA 189
+ GA AL ++ +L + ++
Sbjct: 130 LIGATAALAISGVPFNGMVVGARVGYLLSEDK------------YLLNASADEMLSSSLD 177
Query: 190 NFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
F+ + ++ V+ A + + ++ ++IKL ++
Sbjct: 178 LFLSGNKDSVLMVESEASELS--ESQMLGAISFGHQNCQEVIKLIEE 222
>gi|145298048|ref|YP_001140889.1| polynucleotide phosphorylase/polyadenylase [Aeromonas salmonicida
subsp. salmonicida A449]
gi|187470962|sp|A4SJR9|PNP_AERS4 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|142850820|gb|ABO89141.1| polyribonucleotide nucleotidyltransferase [Aeromonas salmonicida
subsp. salmonicida A449]
Length = 713
Score = 146 bits (368), Expect = 2e-33, Method: Composition-based stats.
Identities = 41/241 (17%), Positives = 87/241 (36%), Gaps = 18/241 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVP----MWIRNTKHG 57
R+ GR +R +S+ + A GS L G+T + ATL + + +
Sbjct: 314 RIDGRDPEMIRALSVGTGILPRAHGSALFTRGETQAIVVATLGTERDAQNIDELAGHRAD 373
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P G + R+ G + R + +V+ +A + + +
Sbjct: 374 RFMLHYNFPPYCVGETGMMGSPKRREIGHGRL----AKRGVAAVMPSAAEFPYVVRVVSE 429
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ G+ +AL D ++ + V + + +
Sbjct: 430 ITESNGSSSMASVCGSSLALMDAGVPIKASVAGIAMGLVKEEEGFVVLSD---------I 480
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T G I +Q + +++ L A+ ++K+ +
Sbjct: 481 LGDEDHLGDMDFKVAGTTQG-ITALQMDIKIEGITKEIMEIALKQARGARLHILKVMDEA 539
Query: 238 I 238
I
Sbjct: 540 I 540
Score = 94.5 bits (233), Expect = 1e-17, Method: Composition-based stats.
Identities = 37/228 (16%), Positives = 74/228 (32%), Gaps = 27/228 (11%)
Query: 14 ISLTRRV-SKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGMLPR 68
++L V ++ A + +V DT + T + + + T G +P
Sbjct: 15 VTLETGVMARQATAAVMVSMDDTCVFVTVVGKKEADHGRDFFPLTVNYQERTYAAGRIPG 74
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
R GR R+I R +R + L Q++ +
Sbjct: 75 GFFRR------EGRPSEGETLTSRLIDRPIRPLFPEGFLNEVQVVATVMSVNPLVSPDIV 128
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+ GA A G +AA G + G +++ E D+D
Sbjct: 129 AMIGASAA-------------LAISGIPFGGPIAAARVGYMNGQYVLNPTTAELPQSDLD 175
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
T + ++ V+ +E A S++ + +++ +I +
Sbjct: 176 LVVAGTAN-AVLMVE--SEAAILSEEVMLGAVVYGHEQMQVVINAINE 220
>gi|262374052|ref|ZP_06067329.1| polyribonucleotide nucleotidyltransferase [Acinetobacter junii
SH205]
gi|262311063|gb|EEY92150.1| polyribonucleotide nucleotidyltransferase [Acinetobacter junii
SH205]
Length = 697
Score = 146 bits (368), Expect = 2e-33, Method: Composition-based stats.
Identities = 49/239 (20%), Positives = 88/239 (36%), Gaps = 10/239 (4%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R+ GR +R I + V A GS L G+T L T TL + +T G T
Sbjct: 317 RIDGRDTKTVRAIDVQVGVLDRAHGSALFTRGETQALVTTTLGNTRDALMVDTLAGTKTD 376
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
+ + V R R+ R +++V+ + I I D+ ++
Sbjct: 377 NFMLHYNFPAYSVGETGRESGPKRREIGHGRLARRGVQAVLPAADRFPYVIRIVSDITES 436
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
+G + A++ GA ++L D ++ + V +G A+ + E
Sbjct: 437 NGSSSMASVCGASLSLMDAGVPLKAPVAGIAMGLVKEGERFAVLSD---------ILGDE 487
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
D D+D + +G I +Q + +++ LN A ++ VIS
Sbjct: 488 DHLGDMDFKVAGSANG-ITALQMDIKIEGITEEIMEVALNQAFAGRMHILNEMNKVISR 545
Score = 89.1 bits (219), Expect = 5e-16, Method: Composition-based stats.
Identities = 39/228 (17%), Positives = 74/228 (32%), Gaps = 28/228 (12%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----HGWITAEYGMLPR 68
+ L V++ A + LV G +L + K + G +P
Sbjct: 18 VVLETGRVARQAN-TVLVTMGGVTVLVAVVAQPKAKAGQDFFPLTVNYQEKQYAAGRIPG 76
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
G R GR I R+I R +R + Q+ A
Sbjct: 77 GYGKR------EGRASEAETLISRLIDRPIRPLFPEGYFNEIQVTATVVSSDKTMDADIA 130
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+ G AL +G + G++ G +++ ++ + + D+D
Sbjct: 131 AMLGTSAALSIAGT-------------PFRGPIGGARVGLINGEYVLNPNFEQLAQSDLD 177
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
T+S ++ V+ A+ S+D + D + I+ K+
Sbjct: 178 LVVAGTES-AVLMVESEAKE--LSEDQMLGAVLFGHDEMQIAIQAIKE 222
>gi|261820132|ref|YP_003258238.1| polynucleotide phosphorylase/polyadenylase [Pectobacterium wasabiae
WPP163]
gi|261604145|gb|ACX86631.1| polyribonucleotide nucleotidyltransferase [Pectobacterium wasabiae
WPP163]
Length = 706
Score = 146 bits (368), Expect = 2e-33, Method: Composition-based stats.
Identities = 45/242 (18%), Positives = 92/242 (38%), Gaps = 18/242 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR+++ +R + + V GS L G+T L TATL + + + +
Sbjct: 315 RIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTERDAQTIDELTGERTD 374
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + R+ G + R + +V+ + + + +
Sbjct: 375 RFLLHYNFPPYSVGETGMVGSPKRREIGHGRL----AKRGVLAVMPKANEFPYTVRVVSE 430
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ GA +AL D ++ + V +G + +
Sbjct: 431 ITESNGSSSMASVCGASLALMDAGVPIKSAVAGIAMGLVKEGDNFVVLSD---------I 481
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D + G I +Q + +++ LN AK ++ + +
Sbjct: 482 LGDEDHLGDMDFKVAGSREG-ITALQMDIKIEGITREIMQVALNQAKGARLHILGVMEQA 540
Query: 238 IS 239
IS
Sbjct: 541 IS 542
Score = 91.4 bits (225), Expect = 1e-16, Method: Composition-based stats.
Identities = 39/232 (16%), Positives = 72/232 (31%), Gaps = 27/232 (11%)
Query: 14 ISLTRRV-SKYAEGSCLVKFGDTHLLTTATLEEKVPM----WIRNTKHGWITAEYGMLPR 68
++L + ++ A + +V DT + T + + + T G P
Sbjct: 16 VTLETGMMARQATAAVMVSMDDTAVFVTVVGAKNAKPGQSFFPLTVNYQERTYAAGRFPG 75
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
R GR I R+I R +R + L Q+I +
Sbjct: 76 GFFRR------EGRPSEGETLISRLIDRPIRPLFPEGFLNEVQVIATVVSVNPQVNPDIV 129
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+ GA A G + A G L +++ E +D
Sbjct: 130 AMIGASAA-------------LSLSGIPFSGPIGAARVGYLNDQYVLNPTTDELKESRLD 176
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
T G ++ V+ AE S+D + D+ +I+ +++
Sbjct: 177 LVVAGTQ-GAVLMVESEAE--VLSEDQMLGAVVFGHDQQQIVIENINSLVAE 225
>gi|253686990|ref|YP_003016180.1| Polyribonucleotide nucleotidyltransferase [Pectobacterium
carotovorum subsp. carotovorum PC1]
gi|259534139|sp|C6DKK7|PNP_PECCP RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|251753568|gb|ACT11644.1| Polyribonucleotide nucleotidyltransferase [Pectobacterium
carotovorum subsp. carotovorum PC1]
Length = 706
Score = 146 bits (368), Expect = 2e-33, Method: Composition-based stats.
Identities = 45/242 (18%), Positives = 93/242 (38%), Gaps = 18/242 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR+++ +R + + V GS L G+T L TATL + + + +
Sbjct: 315 RIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTERDAQTIDELTGERTD 374
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + R+ G + R + +V+ ++ + + +
Sbjct: 375 RFLLHYNFPPYSVGETGMVGSPKRREIGHGRL----AKRGVLAVMPKASEFPYTVRVVSE 430
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ GA +AL D ++ + V +G + +
Sbjct: 431 ITESNGSSSMASVCGASLALMDAGVPIKSAVAGIAMGLVKEGDNFVVLSD---------I 481
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D + G I +Q + +++ LN AK ++ + +
Sbjct: 482 LGDEDHLGDMDFKVAGSREG-ITALQMDIKIEGITREIMQVALNQAKGARLHILGVMEQA 540
Query: 238 IS 239
IS
Sbjct: 541 IS 542
Score = 91.8 bits (226), Expect = 7e-17, Method: Composition-based stats.
Identities = 38/232 (16%), Positives = 73/232 (31%), Gaps = 27/232 (11%)
Query: 14 ISLTRRV-SKYAEGSCLVKFGDTHLLTTATLEEKVPM----WIRNTKHGWITAEYGMLPR 68
++L + ++ A + +V DT + T + + + T G P
Sbjct: 16 VTLETGMMARQATAAVMVSMDDTAVFVTVVGAKNAKPGQSFFPLTVNYQERTYAAGRFPG 75
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
R GR I R+I R +R + L Q+I +
Sbjct: 76 GFFRR------EGRPSEGETLISRLIDRPIRPLFPEGFLNEVQVIATVVSVNPQVNPDIV 129
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+ GA A G + A G L +++ E +D
Sbjct: 130 AMIGASAA-------------LSLSGIPFSGPIGAARVGYLNDQYVLNPTTDELKESRLD 176
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
T+ G ++ V+ +E S+D + D+ +I+ +++
Sbjct: 177 LVVAGTE-GAVLMVE--SEADLLSEDQMLGAVVFGHDQQQVVIENINALVAE 225
>gi|58617084|ref|YP_196283.1| polynucleotide phosphorylase/polyadenylase [Ehrlichia ruminantium
str. Gardel]
gi|75357076|sp|Q5FHK5|PNP_EHRRG RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|58416696|emb|CAI27809.1| Polyribonucleotide nucleotidyltransferase [Ehrlichia ruminantium
str. Gardel]
Length = 789
Score = 146 bits (368), Expect = 2e-33, Method: Composition-based stats.
Identities = 51/251 (20%), Positives = 91/251 (36%), Gaps = 25/251 (9%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR N +R+I + V GS L G+T L L +E++ + +
Sbjct: 323 RIDGRAFNGIRDIEIEIDVLPKTHGSALFTRGNTQALVVTALGTPQDEQIVDDLDGDRRE 382
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P + G A R+ G + +A+R V+ + I + +
Sbjct: 383 NFLLHYNFPPYAVGESAALRAPGRREIGHGKL----AWKAIRYVLPEKSDFPYTIRVVSE 438
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ ++DG + A + GA +AL D ++ + + +G I +
Sbjct: 439 ITESDGSSSMATVCGASLALMDTGVPIKAPVAGIAMGLIKEGEKFIILSD---------I 489
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ--- 234
ED D+D T SG I +Q + + S + L AKD ++
Sbjct: 490 LGDEDHLGDMDFKVAGTSSG-ITALQMDMKISGISIEVIEKSLLQAKDGRMHILDKMNLV 548
Query: 235 ----KDVISNE 241
++ I N
Sbjct: 549 IQESRECIKNH 559
Score = 78.3 bits (191), Expect = 9e-13, Method: Composition-based stats.
Identities = 34/227 (14%), Positives = 73/227 (32%), Gaps = 24/227 (10%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLE---EKVPMWIRNTKHGWITAEYGMLPRS 69
+ L +++ A G+ +V +G T +L+T E V + + G +P
Sbjct: 16 LVLESGKIARQANGAVVVTYGGTTVLSTVVAGKAKEPVDFLPLTVQFVAKSYAVGKIPGG 75
Query: 70 TGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAA 129
R G+ R I R+I R++R + I+ + A
Sbjct: 76 FLKR------EGKPSDRETLISRLIDRSIRPLFPSGFYDEVSIVCNLLSYDTVTPPEVTA 129
Query: 130 ITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDA 189
+ GA AL ++ +L + ++
Sbjct: 130 LIGATAALAISGVPFNGMVVGARVGYLLSEDK------------YLLNASADEMLSSSLD 177
Query: 190 NFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
F+ + ++ V+ A + + A ++ ++IKL ++
Sbjct: 178 LFLSGNKDSVLMVESEASELS--ESQMLAAISFGHQNCQEVIKLIEE 222
>gi|255569434|ref|XP_002525684.1| polyribonucleotide nucleotidyltransferase, putative [Ricinus
communis]
gi|223534984|gb|EEF36667.1| polyribonucleotide nucleotidyltransferase, putative [Ricinus
communis]
Length = 948
Score = 146 bits (368), Expect = 2e-33, Method: Composition-based stats.
Identities = 49/241 (20%), Positives = 87/241 (36%), Gaps = 13/241 (5%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEE-----KVPMWIRNTKH 56
R GR + +R I+ + A GS L G+T L ATL + KV + +
Sbjct: 450 RSDGRNADGIRPINSRCGLLPRAHGSALFTRGETQSLAVATLGDKQMAQKVDNLVDVDEF 509
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
+Y P S G + A S R+ G RAL ++ A I ++
Sbjct: 510 KRFYLQYSFPPSSVGEVGRMGAPSRREIGHGML----AERALEPILPSEADFPYTIRVES 565
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+ +++G + A++ G +AL D ++ + VL G + D
Sbjct: 566 TITESNGSSSMASVCGGCLALQDAGVPVKCSIAGIAMGMVLDTEEFG---GDGTPLILSD 622
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED++ D+D + G + Q + + L A+D ++
Sbjct: 623 ITGSEDASGDMDFKVAGNEDG-VTAFQMDIKVGGITLPVMRRALLQARDGRKHILAEMLK 681
Query: 237 V 237
Sbjct: 682 C 682
Score = 86.4 bits (212), Expect = 3e-15, Method: Composition-based stats.
Identities = 36/230 (15%), Positives = 69/230 (30%), Gaps = 19/230 (8%)
Query: 12 REISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRST 70
R I + + + A GS +V G+T + TT L++ E T
Sbjct: 100 RHILVETGHTGRQASGSVMVTDGETIVYTTVCLDDVPSEPSDFFPLSVNYQERFSAAGRT 159
Query: 71 GNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAI 130
GR I R+I R LR + QI+ + A+
Sbjct: 160 S--GGFFKREGRAKDHEVLICRLIDRPLRPTMLKGFYHETQILSWVLSYDGLHSSDALAV 217
Query: 131 TGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDAN 190
T A +A+ +A + G++ IV+ E +D
Sbjct: 218 TAAGIAV-------------ALSEVPTTKAIAGVRVGLVGDKFIVNPTTKEMEESKLDLV 264
Query: 191 FVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
T I+ ++ ++ + + +D + + ++
Sbjct: 265 MAGT-DSAILMIE--GYCNFLPEEKLLEAVQVGQDAVRAICNEVDALVKK 311
>gi|331664778|ref|ZP_08365683.1| polyribonucleotide nucleotidyltransferase [Escherichia coli TA143]
gi|324115230|gb|EGC09194.1| polyribonucleotide nucleotidyltransferase [Escherichia fergusonii
B253]
gi|331058026|gb|EGI30008.1| polyribonucleotide nucleotidyltransferase [Escherichia coli TA143]
Length = 721
Score = 146 bits (368), Expect = 2e-33, Method: Composition-based stats.
Identities = 45/242 (18%), Positives = 92/242 (38%), Gaps = 18/242 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR+++ +R + + V GS L G+T L TATL + +V + +
Sbjct: 325 RIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVLDELMGERTD 384
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + R+ G + R + +V+ + + +
Sbjct: 385 TFLFHYNFPPYSVGETGMVGSPKRREIGHGRL----AKRGVLAVMPDMDKFPYTVRVVSE 440
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ GA +AL D ++ + V +G + +
Sbjct: 441 ITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLSD---------I 491
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D + G I +Q + +++ LN AK ++ + +
Sbjct: 492 LGDEDHLGDMDFKVAGSRDG-ISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQA 550
Query: 238 IS 239
I+
Sbjct: 551 IN 552
Score = 96.1 bits (237), Expect = 4e-18, Method: Composition-based stats.
Identities = 37/232 (15%), Positives = 76/232 (32%), Gaps = 27/232 (11%)
Query: 14 ISLTRRV-SKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----HGWITAEYGMLPR 68
++L + ++ A + +V DT + T ++K + T G +P
Sbjct: 26 VTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVNYQERTYAAGRIPG 85
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
S R GR I R+I R +R + + Q+I +
Sbjct: 86 SFFRR------EGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVNPDIV 139
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+ GA A G + A G + +++ E +D
Sbjct: 140 AMIGASAA-------------LSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLD 186
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
T++ ++ V+ AE S+D + ++ +I+ +++
Sbjct: 187 LVVAGTEA-AVLMVESEAEL--LSEDQMLGAVVFGHEQQQVVIQNINELVKE 235
>gi|296104878|ref|YP_003615024.1| polyribonucleotide nucleotidyltransferase [Enterobacter cloacae
subsp. cloacae ATCC 13047]
gi|295059337|gb|ADF64075.1| polyribonucleotide nucleotidyltransferase [Enterobacter cloacae
subsp. cloacae ATCC 13047]
Length = 712
Score = 146 bits (368), Expect = 2e-33, Method: Composition-based stats.
Identities = 44/242 (18%), Positives = 93/242 (38%), Gaps = 18/242 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR+++ +R + + V GS L G+T L TATL + ++ + +
Sbjct: 315 RIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQIIDELMGERTD 374
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + R+ G + R + +V+ + + + +
Sbjct: 375 SFLFHYNFPPYSVGETGMVGSPKRREIGHGRL----AKRGVLAVMPDADKFPYTVRVVSE 430
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ GA +AL D ++ + V +G + +
Sbjct: 431 ITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNFVVLSD---------I 481
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D + G I +Q + +++ LN AK ++ + +
Sbjct: 482 LGDEDHLGDMDFKVAGSRDG-ISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQA 540
Query: 238 IS 239
I+
Sbjct: 541 IN 542
Score = 95.7 bits (236), Expect = 5e-18, Method: Composition-based stats.
Identities = 37/232 (15%), Positives = 75/232 (32%), Gaps = 27/232 (11%)
Query: 14 ISLTRRV-SKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----HGWITAEYGMLPR 68
++L + ++ A + +V DT + T ++K + T G +P
Sbjct: 16 VTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVNYQERTYAAGKIPG 75
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
R GR I R+I R +R + + Q+I +
Sbjct: 76 GFFRR------EGRPSEGETLIARLIDRPVRPLFPEGFVNEVQVIATVVSVNPQVNPDIV 129
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+ GA A G + A G + +++ E +D
Sbjct: 130 AMIGASAA-------------LSLSGIPFNGPIGAARVGYINDQYVLNPTQEELKESKLD 176
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
T++ ++ V+ AE S+D + D+ +I+ +++
Sbjct: 177 LVVAGTEA-AVLMVESEAEL--LSEDQMLGAVVFGHDQQQVVIQNINELVKE 225
>gi|183600370|ref|ZP_02961863.1| hypothetical protein PROSTU_03936 [Providencia stuartii ATCC 25827]
gi|188020161|gb|EDU58201.1| hypothetical protein PROSTU_03936 [Providencia stuartii ATCC 25827]
Length = 722
Score = 146 bits (368), Expect = 2e-33, Method: Composition-based stats.
Identities = 46/243 (18%), Positives = 92/243 (37%), Gaps = 18/243 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR+++ +R + + V GS L G+T L TATL + +V +
Sbjct: 330 RIDGREKDMVRALDVRTSVLPRTHGSALFTRGETQALVTATLGTERDAQVIDQLMGEYTD 389
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + R+ G + R + +V+ A + + +
Sbjct: 390 RFLFHYNFPPYSVGETGMVGSPKRREIGHGRL----AKRGVMAVMPDHADFPYTVRVVSE 445
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ GA +AL D ++ + V +G + +
Sbjct: 446 ITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDDFVVLSD---------I 496
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D + G I +Q + +++ LN AK ++ +
Sbjct: 497 LGDEDHLGDMDFKVAGSRDG-ISALQMDIKIEGITREIMQVALNQAKGARLHILGTMEQA 555
Query: 238 ISN 240
I++
Sbjct: 556 INS 558
Score = 91.4 bits (225), Expect = 9e-17, Method: Composition-based stats.
Identities = 44/237 (18%), Positives = 81/237 (34%), Gaps = 31/237 (13%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----HGWITAEYGMLPR 68
+S+ +++ A + +V DT + TA ++KV + + G +P
Sbjct: 31 VSIETGMIARQATAAVMVNMDDTAVFVTAVAQKKVKEGQDFFPLTVNYQERSYAAGRIPG 90
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
S R GR G I R+I R LR + L QII +
Sbjct: 91 SFFRR------EGRPGEGETLIARLIDRPLRPLFPEGFLNEIQIIATVVSVNPQVNPDIV 144
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+ GA A G + A G + +++ E +D
Sbjct: 145 AMIGASAA-------------LALSGVPFNGPIGAARVGFINDQYVLNPTADELKLSRLD 191
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR----IADLIKLQKDVISNE 241
T+S ++ V+ +E S++ + D+ I ++ +L K+ +
Sbjct: 192 LVVAGTES-AVLMVE--SEADLLSEEQMLGAVVFGHDQQQIVIQEINELVKEAGKEK 245
>gi|311277863|ref|YP_003940094.1| polyribonucleotide nucleotidyltransferase [Enterobacter cloacae
SCF1]
gi|308747058|gb|ADO46810.1| polyribonucleotide nucleotidyltransferase [Enterobacter cloacae
SCF1]
Length = 711
Score = 146 bits (368), Expect = 2e-33, Method: Composition-based stats.
Identities = 45/242 (18%), Positives = 92/242 (38%), Gaps = 18/242 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR+++ +R + + V GS L G+T L TATL + ++ I +
Sbjct: 315 RIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQIIDEIMGERTD 374
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + R+ G + R + +V+ + + +
Sbjct: 375 TFLFHYNFPPYSVGETGMVGSPKRREIGHGRL----AKRGVLAVMPTMEQFPYTVRVVSE 430
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ GA +AL D ++ + V +G + +
Sbjct: 431 ITESNGSSSMASVCGASLALMDAGVPVKSAVAGIAMGLVKEGDNFVVLSD---------I 481
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D + G I +Q + +++ LN AK ++ + +
Sbjct: 482 LGDEDHLGDMDFKVAGSRDG-ISALQMDIKIEGITKEIMQVALNQAKGARLHILSVMEQA 540
Query: 238 IS 239
I+
Sbjct: 541 IN 542
Score = 93.4 bits (230), Expect = 2e-17, Method: Composition-based stats.
Identities = 36/232 (15%), Positives = 75/232 (32%), Gaps = 27/232 (11%)
Query: 14 ISLTRRV-SKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----HGWITAEYGMLPR 68
++L + ++ A + +V DT + T ++K + T G +P
Sbjct: 16 VTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVNYQERTYAAGKIPG 75
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
R GR I R+I R +R + + Q+I +
Sbjct: 76 GFFRR------EGRPSEGETLIARLIDRPVRPLFPEGFVNEVQVIATVVSVNPQVNPDIV 129
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+ GA A G + A G + +++ E +D
Sbjct: 130 AMIGASAA-------------LSLSGIPFNGPIGAARVGYINDQYVLNPTPEELKVSKLD 176
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
T++ ++ V+ AE S+D + ++ +I+ +++
Sbjct: 177 LVVAGTEA-AVLMVESEAEL--LSEDQMLGAVVYGHEQQQIVIQNINELVKE 225
>gi|197287234|ref|YP_002153106.1| polynucleotide phosphorylase/polyadenylase [Proteus mirabilis
HI4320]
gi|227357072|ref|ZP_03841442.1| polyribonucleotide nucleotidyltransferase [Proteus mirabilis ATCC
29906]
gi|226702677|sp|B4F2C3|PNP_PROMH RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|194684721|emb|CAR46710.1| polyribonucleotide nucleotidyltransferase [Proteus mirabilis
HI4320]
gi|227162764|gb|EEI47727.1| polyribonucleotide nucleotidyltransferase [Proteus mirabilis ATCC
29906]
Length = 709
Score = 146 bits (368), Expect = 2e-33, Method: Composition-based stats.
Identities = 44/243 (18%), Positives = 92/243 (37%), Gaps = 18/243 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR+++ +R + + + GS L G+T L TATL + + I
Sbjct: 315 RIDGREKDMVRALDIRTGLLPRTHGSALFTRGETQALVTATLGTARDAQTIDDIMGEHTD 374
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + R+ G + R + +V+ + + +
Sbjct: 375 TFLLHYNFPPYSVGETGMMGSPKRREIGHGRL----AKRGVLAVMPTIEEFPYTVRVVSE 430
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ GA +AL D +++ + V +G + +
Sbjct: 431 ITESNGSSSMASVCGASLALMDAGVPIKESVAGIAMGLVKEGENFVVLSD---------I 481
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D + +G + +Q + +++ LN AK ++ + +
Sbjct: 482 LGDEDHLGDMDFKVAGSRNG-VSALQMDIKIEGITREIMQVALNQAKSARLHILGVMESA 540
Query: 238 ISN 240
IS
Sbjct: 541 ISQ 543
Score = 70.3 bits (170), Expect = 3e-10, Method: Composition-based stats.
Identities = 35/232 (15%), Positives = 77/232 (33%), Gaps = 27/232 (11%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDT----HLLTTATLEEKVPMWIRNTKHGWITAEYGMLPR 68
++L +++ A + +V T ++ ++E + + + G +P
Sbjct: 16 VTLETGMMARQATAAVMVDMDGTAVFVTVVAKKKVKEGQDFFPLTVNYQERSYAAGRIPG 75
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
S R GR G I R+I R LR + L Q++ +
Sbjct: 76 SFFRR------EGRPGEGETLIARLIDRPLRPLFPEGFLNEIQVVATVVSVNPQVNPDIV 129
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+ GA A G + G + G +++ E +D
Sbjct: 130 AMIGASAA-------------LSLSGVPFNGPIGGARVGFIDGQYVLNPTVDELKISKLD 176
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
T +G ++ V+ +E S++ + ++ +I+ +++
Sbjct: 177 LVVAGT-AGAVLMVE--SEADLLSEEQMLGAVVFGHEQQQVVIENINALVAE 225
>gi|317129156|ref|YP_004095438.1| polyribonucleotide nucleotidyltransferase [Bacillus
cellulosilyticus DSM 2522]
gi|315474104|gb|ADU30707.1| polyribonucleotide nucleotidyltransferase [Bacillus
cellulosilyticus DSM 2522]
Length = 697
Score = 146 bits (368), Expect = 2e-33, Method: Composition-based stats.
Identities = 39/243 (16%), Positives = 84/243 (34%), Gaps = 18/243 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56
+R GR+ +++R ++ + GS L G T L+ T + ++ + +
Sbjct: 313 IRPDGRKPDEIRALASEIDILPRTHGSGLFTRGQTQALSVCTLGALGDVQILDGLGIEET 372
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y S G R+ G RAL V+ I +
Sbjct: 373 KRFMHHYNFPSFSVGETGPIRGPGRREIGHGALG----ERALEQVIPSEEDFPYTIRLVS 428
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V++++G T A+I + +A+ ++ + V +
Sbjct: 429 EVLESNGSTSQASICASTLAMMAAGVPIKAPVAGIAMGLVKHEEDVTVLTD--------- 479
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED+ D+D T G + +Q + + + L+ A++ +++ +
Sbjct: 480 IQGMEDALGDMDFKVAGTKKG-VTAIQMDIKISGIDRAVLEQALSQAREGRIKILESMES 538
Query: 237 VIS 239
IS
Sbjct: 539 AIS 541
Score = 113 bits (283), Expect = 2e-23, Method: Composition-based stats.
Identities = 48/233 (20%), Positives = 87/233 (37%), Gaps = 26/233 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATL---EEKVPMWIRNTKHGWITAEYGMLP 67
R +++ ++K A G+ LV++GDT +L+TAT + +P + + G +P
Sbjct: 15 RTLTIEVGQLAKQANGAVLVRYGDTAVLSTATASKEPKDLPFFPLTVNYEERLYAAGKIP 74
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R GR + R+I R +R + Q+I D
Sbjct: 75 GGFIKR------EGRPSDHAVLTSRLIDRPIRPMFPDGFRNDVQVISIVMSNDQDAPAEM 128
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
AA+ G+ +A G +A ++ G + G I++ + T D+
Sbjct: 129 AAMIGSSLA-------------LSVSDIPFSGPIAGVTIGRIDGEFIINPTPQQLETSDI 175
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
+ I V+ AE ++ L D I +I Q+D++S
Sbjct: 176 ELVVAGNKD-AINMVEAGAEEVP--EETILEALMYGHDEIKRIIAFQEDIVSK 225
>gi|256544705|ref|ZP_05472077.1| polyribonucleotide nucleotidyltransferase [Anaerococcus vaginalis
ATCC 51170]
gi|256399594|gb|EEU13199.1| polyribonucleotide nucleotidyltransferase [Anaerococcus vaginalis
ATCC 51170]
Length = 702
Score = 146 bits (368), Expect = 2e-33, Method: Composition-based stats.
Identities = 46/243 (18%), Positives = 92/243 (37%), Gaps = 19/243 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWI-RNTK 55
+R GR+ +++R +S + A GS L + G T +L+ T EE+V + R
Sbjct: 311 IRPDGRKMDEIRPLSAEAGLLPRAHGSGLFQRGQTQVLSVLTLGSPGEEQVIDSMNREEI 370
Query: 56 HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115
+Y P G+ R+ G RAL V+ + I +
Sbjct: 371 TKRYIHQYNFPPFCVGDIRPLRGPGRREVGHGHL----AERALIPVLPDTNDFPYTIRVV 426
Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIV 175
+V+ ++G + A+I G+ ++L D ++ + + + + +I
Sbjct: 427 SEVLSSNGSSSQASICGSTLSLMDAGVPIKKPVAGIAMGLIKEENSISILTD-------- 478
Query: 176 DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
+ ED D+D T G I +Q + + +++ L A +++ +
Sbjct: 479 -IQGLEDHLGDMDFKVAGTKDG-ITALQMDMKISGINKEVLQEALADAHKARLEILDVIT 536
Query: 236 DVI 238
I
Sbjct: 537 SAI 539
Score = 95.3 bits (235), Expect = 7e-18, Method: Composition-based stats.
Identities = 49/233 (21%), Positives = 83/233 (35%), Gaps = 27/233 (11%)
Query: 13 EISLTRR-VSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKHGWITAEYGMLP 67
++S+T V++ G CL++ GDT LL TA E + + + G +P
Sbjct: 14 DLSITIGKVAEQTNGECLIRTGDTILLVTAVASDKPREGIDFFPLICDYQEKLYAVGKIP 73
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R G+ ++ I R + R LR + + Q+I + D
Sbjct: 74 GGFIKR------EGKASDKAILISRQMDRPLRPLFPENFYNDVQVIATPFSVDEDNEPDC 127
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
GA +A G VAA+S G + G IV+ + E +
Sbjct: 128 MTTIGASIA-------------LGISDIPFYGPVAAVSVGYVDGKFIVNPNKDEREISSL 174
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
D T I V+ A S+D + +A I ++ + +I +
Sbjct: 175 DLTVAGTAD-AINMVEAGANE--LSEDEMLEAMMVAHAEIKEICGFIQTIIDD 224
>gi|227824763|ref|ZP_03989595.1| polyribonucleotide nucleotidyltransferase [Acidaminococcus sp. D21]
gi|226905262|gb|EEH91180.1| polyribonucleotide nucleotidyltransferase [Acidaminococcus sp. D21]
Length = 703
Score = 146 bits (368), Expect = 2e-33, Method: Composition-based stats.
Identities = 44/242 (18%), Positives = 84/242 (34%), Gaps = 18/242 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLL-TTATLEEKVPMWIRNTK---H 56
+R GR +++R IS + G L G T +L A + +
Sbjct: 321 IRPDGRALDEVRPISCEVGLLARPHGCSLFTRGQTQVLNCLALAPLREAQTLDGLGTELT 380
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P S G + R+ G RAL V+ I +
Sbjct: 381 KRYIHHYNFPPYSVGETKPLRSPGRREIGHGAL----AERALLPVIPSEEEFPYTIRLVS 436
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V++++G + A+ + ++L D ++ + + V +G + D
Sbjct: 437 EVLESNGSSSMASTCASTLSLMDAGVPIKAPVSGVAMGLVKEGDDI---------TILTD 487
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED+ D+D T+ G I +Q + ++ F L A+ A ++ +
Sbjct: 488 IQGLEDANGDMDFKVAGTEKG-ITAIQMDIKIDGINRQIFEQALEQARKGRAYILGKMLE 546
Query: 237 VI 238
I
Sbjct: 547 CI 548
Score = 117 bits (292), Expect = 2e-24, Method: Composition-based stats.
Identities = 40/231 (17%), Positives = 80/231 (34%), Gaps = 27/231 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGML 66
R +++ ++K A GS L+++G+T ++ T E V + G +
Sbjct: 22 RPLTIETGKIAKQANGSVLIRYGETAVVVAVTGTDTPREGVDFFPLTVDFEEKMYAVGKI 81
Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
P R GR + R+I R +R + QI+ + D
Sbjct: 82 PGGFLRR------EGRPPETAILTSRLIDRPIRPMFPDGYHNDVQIVATAVSVDPDNAPD 135
Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
A+ GA A +G +A + G + G I++ + + +
Sbjct: 136 IPAMIGASCA-------------LSISDIPFEGPIAGVRVGRVDGKFIINPTLEQAAVSE 182
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
++ T I+ V+ A+ S+ + + I L+ Q+ +
Sbjct: 183 MNVAVAGTKE-AILMVEAGAKE--VSEQVMLDAILFGHEEIKKLVAFQEQI 230
>gi|229019001|ref|ZP_04175843.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus AH1273]
gi|229025246|ref|ZP_04181668.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus AH1272]
gi|228736074|gb|EEL86647.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus AH1272]
gi|228742329|gb|EEL92487.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus AH1273]
Length = 712
Score = 146 bits (368), Expect = 3e-33, Method: Composition-based stats.
Identities = 44/244 (18%), Positives = 85/244 (34%), Gaps = 18/244 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56
+R GR+ +++R ++ + GS L G T L+ T + ++ + +
Sbjct: 315 IRPDGRKGDEIRPLASEVGILSRTHGSGLFTRGQTQALSICTLGALGDVQILDGLGVEES 374
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y S G R+ G RAL V+ + +
Sbjct: 375 KRFMHHYNFPSFSVGETRPMRGPGRREIGHGALG----ERALEPVIPSEKDFPYTVRLVS 430
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V++++G T A+I G+ +A+ D ++ + V G + D
Sbjct: 431 EVLESNGSTSQASICGSTLAMMDAGVPLKAPVAGIAMGLVKTGE---------HYTILSD 481
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T G + +Q + S++ L AK ++
Sbjct: 482 IQGMEDHLGDMDFKVAGTAKG-VTALQMDIKIDGLSREILEEALQQAKVGRVHILNHMLS 540
Query: 237 VISN 240
VI+
Sbjct: 541 VIAE 544
Score = 113 bits (281), Expect = 3e-23, Method: Composition-based stats.
Identities = 43/231 (18%), Positives = 89/231 (38%), Gaps = 26/231 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATL---EEKVPMWIRNTKHGWITAEYGMLP 67
R++++ ++K A G+ LV++GDT +L+TAT + V + + G +P
Sbjct: 15 RQLTIETSQLAKQANGAVLVRYGDTAVLSTATASKEPKNVDFFPLTVNYEERLYAVGKIP 74
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R GR ++ R+I R +R + Q++ + D +
Sbjct: 75 GGFIKR------EGRPSEKAILASRLIDRPIRPLFADGFRNEVQVVSIVMSVDQDCSSEM 128
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
AA+ G+ +A +G +A + G + G +++ + D+
Sbjct: 129 AAMFGSSLA-------------LSISDIPFEGPIAGATVGRINGEFVINPTVEQQEQSDI 175
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
T I V+ A++ ++ + D I LI Q++++
Sbjct: 176 HLVVAGTKD-AINMVEAGADQVP--EETMLEAIMFGHDEIKRLIAFQEEIV 223
>gi|262280783|ref|ZP_06058566.1| polyribonucleotide nucleotidyltransferase [Acinetobacter
calcoaceticus RUH2202]
gi|262257683|gb|EEY76418.1| polyribonucleotide nucleotidyltransferase [Acinetobacter
calcoaceticus RUH2202]
Length = 697
Score = 146 bits (368), Expect = 3e-33, Method: Composition-based stats.
Identities = 49/239 (20%), Positives = 89/239 (37%), Gaps = 10/239 (4%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R+ GR +R I + V A GS L G+T L T TL + +T G T
Sbjct: 317 RIDGRDTKTVRGIDVQVGVLDRAHGSALFTRGETQALVTTTLGNTRDALMVDTLSGTKTD 376
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
+ + V R R+ R +++V+ + I I D+ ++
Sbjct: 377 NFMLHYNFPAYSVGETGRESGPKRREIGHGRLARRGVQAVLPAADRFPYVIRIVSDITES 436
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
+G + A++ GA ++L D ++ + V +G A+ + E
Sbjct: 437 NGSSSMASVCGASLSLMDAGVPLKAPVAGIAMGLVKEGERFAVLSD---------ILGDE 487
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
D D+D +++G I +Q + +++ LN A ++ VIS
Sbjct: 488 DHLGDMDFKVAGSENG-ITALQMDIKIEGITEEIMEVALNQAFAGRMHILNEMNKVISR 545
Score = 90.7 bits (223), Expect = 2e-16, Method: Composition-based stats.
Identities = 41/228 (17%), Positives = 75/228 (32%), Gaps = 28/228 (12%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----HGWITAEYGMLPR 68
+ L V++ A + LV G +L + K + G +P
Sbjct: 18 VVLETGRVARQAN-TVLVTMGGVTVLVAVVAQPKAKAGQDFFPLTVNYQEKQYAAGRIPG 76
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
G R GRQ I R+I R +R + Q+ A
Sbjct: 77 GYGKR------EGRQSEAETLISRLIDRPIRPLFPEGFYNEIQVTATVISSDKTMDADIA 130
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+ GA A+ +G +A G++ G I++ + + D+D
Sbjct: 131 AMIGASAAMSIAAV-------------PFRGPIAGARVGLINGEYILNPTHEQLKESDLD 177
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
T+S ++ V+ A+ S+D + D + ++ K+
Sbjct: 178 LVVAGTES-AVLMVESEAKE--LSEDQMLGAVLFGHDEMQIAVQAIKE 222
>gi|255011565|ref|ZP_05283691.1| polynucleotide phosphorylase/polyadenylase [Bacteroides fragilis
3_1_12]
Length = 648
Score = 146 bits (368), Expect = 3e-33, Method: Composition-based stats.
Identities = 49/243 (20%), Positives = 89/243 (36%), Gaps = 18/243 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHG 57
RL GR+ ++R I GS + G+T LT+ T L+EK+ +
Sbjct: 319 RLDGRKTTEIRPIWCEVGYLPGPHGSAIFTRGETQSLTSVTLGTKLDEKIIDDVLAHGKE 378
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P STG + V R+ G RAL+ ++ + + D
Sbjct: 379 RFLLHYNFPPFSTGEAKAQRGVGRREIGHGNL----AHRALKKMIPEDY--PYVVRVVSD 432
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+++++G + A + +AL D ++ + + + G + D+
Sbjct: 433 ILESNGSSSMATVCAGTLALMDAGVKIKKPVSGIAMGLIKN-------AGEEKYAVLSDI 485
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T G I Q + S + LN AK+ ++ ++
Sbjct: 486 LGDEDHLGDMDFKVTGTKDG-ITATQMDIKVDGLSYEILERALNQAKEGRMHILGKIQET 544
Query: 238 ISN 240
I+
Sbjct: 545 IAE 547
Score = 102 bits (255), Expect = 3e-20, Method: Composition-based stats.
Identities = 36/230 (15%), Positives = 72/230 (31%), Gaps = 19/230 (8%)
Query: 8 ENQMREISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGML 66
R I+L ++K A+GS +++ G+T LL T + E
Sbjct: 11 LGDGRTITLETGKLAKQADGSVMLRMGNTMLLATVCAAKDAVPGTDFMPLQVEYKEKFAA 70
Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
GR R++ RALR + +
Sbjct: 71 FGRFP--GGFTKREGRASDYEILTCRLVDRALRPLFPDNFHAEVY-------------VN 115
Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
+ V + D L + + G ++ + + G +++ + + D
Sbjct: 116 IILFSADGVDMPDALAGLAASAALAVSDIPFNGPISEVRVARIDGKFVINPTFDQLEKAD 175
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+D T +I+ V+ E + S+ + +A + I K Q +
Sbjct: 176 MDIMVAATYE-NIMMVE--GEMSEVSEAELLEAMKVAHEAIKVHCKAQME 222
>gi|261415038|ref|YP_003248721.1| ribonuclease PH [Fibrobacter succinogenes subsp. succinogenes S85]
gi|261371494|gb|ACX74239.1| ribonuclease PH [Fibrobacter succinogenes subsp. succinogenes S85]
gi|302326761|gb|ADL25962.1| tRNA nucleotidyltransferase [Fibrobacter succinogenes subsp.
succinogenes S85]
Length = 241
Score = 146 bits (368), Expect = 3e-33, Method: Composition-based stats.
Identities = 102/241 (42%), Positives = 149/241 (61%), Gaps = 5/241 (2%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R R+ + R + +T A+GS L++ G T ++ ATL KVP W+ GWITA
Sbjct: 5 RTD-RKPEEFRNLKMTTGFISSADGSVLIEMGRTRVICNATLLPKVPDWLAGRGTGWITA 63
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
EY +LP+STG RV E GR+QEIQR++GR+LR DL+ALG I++DCDVI+A
Sbjct: 64 EYSLLPQSTGKRV--ERERKGASGRTQEIQRLVGRSLRGAADLAALGENAIVVDCDVIEA 121
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
DGGTRTA+I G +VAL ++ +++ Q+LK + AIS G++ G P+ DL Y E
Sbjct: 122 DGGTRTASIIGGFVALAIAVKKIKER--LGITQQILKHGITAISVGVVDGNPLCDLCYVE 179
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
DS DVD N VM D+ + +EVQG+ E A+F + +L+L ++ ++ K Q ++I E
Sbjct: 180 DSAADVDMNVVMQDAKNFIEVQGTGEHASFDRAMLNTLLDLGENACKEIYKKQMELIGGE 239
Query: 242 V 242
+
Sbjct: 240 L 240
>gi|330909222|gb|EGH37736.1| polyribonucleotide nucleotidyltransferase [Escherichia coli AA86]
Length = 711
Score = 146 bits (368), Expect = 3e-33, Method: Composition-based stats.
Identities = 45/242 (18%), Positives = 92/242 (38%), Gaps = 18/242 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR+++ +R + + V GS L G+T L TATL + +V + +
Sbjct: 315 RIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVLDELMGERTD 374
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + R+ G + R + +V+ + + +
Sbjct: 375 TFLFHYNFPPYSVGETGMVGSPKRREIGHGRL----AKRGVLAVMPDMDKFPYTVRVVSE 430
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ GA +AL D ++ + V +G + +
Sbjct: 431 ITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLSD---------I 481
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D + G I +Q + +++ LN AK ++ + +
Sbjct: 482 LGDEDHLGDMDFKVAGSRDG-ISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQA 540
Query: 238 IS 239
I+
Sbjct: 541 IN 542
Score = 96.1 bits (237), Expect = 4e-18, Method: Composition-based stats.
Identities = 37/232 (15%), Positives = 76/232 (32%), Gaps = 27/232 (11%)
Query: 14 ISLTRRV-SKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----HGWITAEYGMLPR 68
++L + ++ A + +V DT + T ++K + T G +P
Sbjct: 16 VTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVNYQERTYAAGRIPG 75
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
S R GR I R+I R +R + + Q+I +
Sbjct: 76 SFFRR------EGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVNPDIV 129
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+ GA A G + A G + +++ E +D
Sbjct: 130 AMIGASAA-------------LSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLD 176
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
T++ ++ V+ AE S+D + ++ +I+ +++
Sbjct: 177 LVVAGTEA-AVLMVESEAEL--LSEDQMLGAVVFGHEQQQVVIQNINELVKE 225
>gi|217035382|pdb|3CDI|A Chain A, Crystal Structure Of E. Coli Pnpase
Length = 723
Score = 146 bits (368), Expect = 3e-33, Method: Composition-based stats.
Identities = 45/242 (18%), Positives = 92/242 (38%), Gaps = 18/242 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR+++ +R + + V GS L G+T L TATL + +V + +
Sbjct: 321 RIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVLDELMGERTD 380
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + R+ G + R + +V+ + + +
Sbjct: 381 TFLFHYNFPPYSVGETGMVGSPKRREIGHGRL----AKRGVLAVMPDMDKFPYTVRVVSE 436
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ GA +AL D ++ + V +G + +
Sbjct: 437 ITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLSD---------I 487
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D + G I +Q + +++ LN AK ++ + +
Sbjct: 488 LGDEDHLGDMDFKVAGSRDG-ISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQA 546
Query: 238 IS 239
I+
Sbjct: 547 IN 548
Score = 94.5 bits (233), Expect = 1e-17, Method: Composition-based stats.
Identities = 36/232 (15%), Positives = 76/232 (32%), Gaps = 27/232 (11%)
Query: 14 ISLTRRV-SKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----HGWITAEYGMLPR 68
++L + ++ A + +V DT + T ++K + T G +P
Sbjct: 22 VTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVNYQERTYAAGRIPG 81
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
S R GR I R+I R +R + + Q+I +
Sbjct: 82 SFFRR------EGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVNPDIV 135
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+ GA A G + A G + +++ E +D
Sbjct: 136 AMIGASAA-------------LSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLD 182
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
T++ ++ V+ +E S+D + ++ +I+ +++
Sbjct: 183 LVVAGTEA-AVLMVE--SEAQLLSEDQMLGAVVFGHEQQQVVIQNINELVKE 231
>gi|229174473|ref|ZP_04302005.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus MM3]
gi|228609033|gb|EEK66323.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus MM3]
Length = 712
Score = 146 bits (368), Expect = 3e-33, Method: Composition-based stats.
Identities = 44/244 (18%), Positives = 85/244 (34%), Gaps = 18/244 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56
+R GR+ +++R ++ + GS L G T L+ T + ++ + +
Sbjct: 315 IRPDGRKGDEIRPLASEVGILSRTHGSGLFTRGQTQALSICTLGALGDVQILDGLGVEES 374
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y S G R+ G RAL V+ + +
Sbjct: 375 KRFMHHYNFPSFSVGETRPMRGPGRREIGHGALG----ERALEPVIPSEKDFPYTVRLVS 430
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V++++G T A+I G+ +A+ D ++ + V G + D
Sbjct: 431 EVLESNGSTSQASICGSTLAMMDAGVPLKAPVAGIAMGLVKTGE---------HYTILSD 481
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T G + +Q + S++ L AK ++
Sbjct: 482 IQGMEDHLGDMDFKVAGTAKG-VTALQMDIKIDGLSREILEEALQQAKVGRVHILNHMLS 540
Query: 237 VISN 240
VI+
Sbjct: 541 VIAE 544
Score = 112 bits (279), Expect = 6e-23, Method: Composition-based stats.
Identities = 43/231 (18%), Positives = 89/231 (38%), Gaps = 26/231 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATL---EEKVPMWIRNTKHGWITAEYGMLP 67
R++++ ++K A G+ LV++GDT +L+TAT + V + + G +P
Sbjct: 15 RQLTVETSQLAKQANGAVLVRYGDTAVLSTATASKEPKNVDFFPLTVNYEERLYAVGKIP 74
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R GR ++ R+I R +R + Q++ + D +
Sbjct: 75 GGFIKR------EGRPSEKAILASRLIDRPIRPLFADGFRNEVQVVSIVMSVDQDCSSEM 128
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
AA+ G+ +A +G +A + G + G +++ + D+
Sbjct: 129 AAMLGSSLA-------------LSISDIPFEGPIAGATVGRINGEFVINPTVEQQEQSDI 175
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
T I V+ A++ ++ + D I LI Q++++
Sbjct: 176 HLVVAGTKD-AINMVEAGADQVP--EETMLEAIMFGHDEIKRLIAFQEEIV 223
>gi|257096720|sp|B7LR33|PNP_ESCF3 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|325498747|gb|EGC96606.1| polynucleotide phosphorylase [Escherichia fergusonii ECD227]
Length = 711
Score = 146 bits (368), Expect = 3e-33, Method: Composition-based stats.
Identities = 45/242 (18%), Positives = 92/242 (38%), Gaps = 18/242 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR+++ +R + + V GS L G+T L TATL + +V + +
Sbjct: 315 RIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVLDELMGERTD 374
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + R+ G + R + +V+ + + +
Sbjct: 375 TFLFHYNFPPYSVGETGMVGSPKRREIGHGRL----AKRGVLAVMPDMDKFPYTVRVVSE 430
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ GA +AL D ++ + V +G + +
Sbjct: 431 ITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLSD---------I 481
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D + G I +Q + +++ LN AK ++ + +
Sbjct: 482 LGDEDHLGDMDFKVAGSRDG-ISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQA 540
Query: 238 IS 239
I+
Sbjct: 541 IN 542
Score = 96.1 bits (237), Expect = 4e-18, Method: Composition-based stats.
Identities = 37/232 (15%), Positives = 76/232 (32%), Gaps = 27/232 (11%)
Query: 14 ISLTRRV-SKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----HGWITAEYGMLPR 68
++L + ++ A + +V DT + T ++K + T G +P
Sbjct: 16 VTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVNYQERTYAAGRIPG 75
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
S R GR I R+I R +R + + Q+I +
Sbjct: 76 SFFRR------EGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVNPDIV 129
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+ GA A G + A G + +++ E +D
Sbjct: 130 AMIGASAA-------------LSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLD 176
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
T++ ++ V+ AE S+D + ++ +I+ +++
Sbjct: 177 LVVAGTEA-AVLMVESEAEL--LSEDQMLGAVVFGHEQQQVVIQNINELVKE 225
>gi|126652561|ref|ZP_01724726.1| polynucleotide phosphorylase/polyadenylase [Bacillus sp. B14905]
gi|126590689|gb|EAZ84805.1| polynucleotide phosphorylase/polyadenylase [Bacillus sp. B14905]
Length = 704
Score = 146 bits (368), Expect = 3e-33, Method: Composition-based stats.
Identities = 43/244 (17%), Positives = 89/244 (36%), Gaps = 18/244 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56
+R GR+ +++R++S + + GS L G T L+ T + ++ + +
Sbjct: 314 IRPDGRKLDEIRQLSSETGILQRTHGSGLFTRGQTQALSICTLGALGDVQIIDGLGVEES 373
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y S G R+ G RAL +V+ ++ I
Sbjct: 374 KRFMHHYNFPQFSVGETGPIRGPGRREIGHGALG----ERALEAVIPDESVFPYTIRCVS 429
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V++++G T A+I + +A+ D ++ + + KG +I
Sbjct: 430 EVLESNGSTSQASICASTLAMMDAGVPLKAPVAGIAMGLIKKGEHYSILTD--------- 480
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T G + +Q + S++ L AK +++
Sbjct: 481 IQGMEDHLGDMDFKVAGTAKG-VTALQMDIKIDGLSRNILEEALTQAKVGRMHILESMLA 539
Query: 237 VISN 240
++
Sbjct: 540 TLAE 543
Score = 117 bits (292), Expect = 2e-24, Method: Composition-based stats.
Identities = 41/233 (17%), Positives = 85/233 (36%), Gaps = 26/233 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATL---EEKVPMWIRNTKHGWITAEYGMLP 67
R + + ++K A G+ LV++GDT +L+TAT+ + + + + G +P
Sbjct: 14 RPLVIEVGQLAKQANGAVLVRYGDTSVLSTATMSKSPKPLDFFPLTVNYEERLYAAGKIP 73
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R GR ++ R+I R +R + Q+I +D +
Sbjct: 74 GGFIKR------EGRPSEKAILASRLIDRPIRPMFPDGFRNEVQVISMVMSNDSDCTSEM 127
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
AA+ G+ +A G +A + G + G IV+ + + +
Sbjct: 128 AAMVGSSLA-------------LAISDIPFDGPIAGVQVGYINGEFIVNPTVEQSNQSTI 174
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
+ I V+ A ++ + + I +I Q+ +++
Sbjct: 175 HLSVAGNKD-AINMVEAGALEVP--EEVMLEAIMFGHEEIKKIIAFQEQIVAE 224
>gi|262363252|gb|ACY59973.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis D106004]
Length = 664
Score = 146 bits (368), Expect = 3e-33, Method: Composition-based stats.
Identities = 43/242 (17%), Positives = 92/242 (38%), Gaps = 18/242 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR+++ +R + + + GS L G+T L TATL + + + +
Sbjct: 274 RIDGREKDMIRGLDVRTGILPRTHGSALFTRGETQALVTATLGTARDAQNIDELMGERTD 333
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P G + R+ G + R + +V+ ++ I + +
Sbjct: 334 SFLLHYNFPPYCVGETGMVGSPKRREIGHGRL----AKRGVLAVMPSASEFPYTIRVVSE 389
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ GA +AL D ++ + V +G + +
Sbjct: 390 ITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNFVVLSD---------I 440
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D + G + +Q + +++ LN AK ++ + +
Sbjct: 441 LGDEDHLGDMDFKVAGSRDG-VTALQMDIKIEGITREIMQVALNQAKGARLHILGVMEQA 499
Query: 238 IS 239
IS
Sbjct: 500 IS 501
Score = 67.6 bits (163), Expect = 2e-09, Method: Composition-based stats.
Identities = 32/205 (15%), Positives = 64/205 (31%), Gaps = 26/205 (12%)
Query: 40 TATLEEKVPM----WIRNTKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIG 95
T ++K + + T G +P S R GR R+I
Sbjct: 2 TVVGQKKAKPGQSFFPLTVNYQERTYAAGRIPGSFFRR------EGRPSEGETLTSRLID 55
Query: 96 RALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQ 155
R +R + S L Q+I + A+ GA A
Sbjct: 56 RPIRPLFPDSFLNEVQVIATVVSVNPQINPDIVALIGASAA-------------LSLSGI 102
Query: 156 VLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDH 215
G + A G + +++ E +D T +G ++ V+ A+ S++
Sbjct: 103 PFNGPIGAARVGFINDQYVLNPTTDELKESRLDLVVAGT-AGAVLMVESEADI--LSEEQ 159
Query: 216 FFAMLNLAKDRIADLIKLQKDVISN 240
+ ++ +I+ +++
Sbjct: 160 MLGAVVFGHEQQQVVIENINALVAE 184
>gi|215488482|ref|YP_002330913.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli
O127:H6 str. E2348/69]
gi|254782721|sp|B7UJ59|PNP_ECO27 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|215266554|emb|CAS10993.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli
O127:H6 str. E2348/69]
Length = 711
Score = 146 bits (368), Expect = 3e-33, Method: Composition-based stats.
Identities = 45/242 (18%), Positives = 92/242 (38%), Gaps = 18/242 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR+++ +R + + V GS L G+T L TATL + +V + +
Sbjct: 315 RIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVLDELMGERTD 374
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + R+ G + R + +V+ + + +
Sbjct: 375 TFLFHYNFPPYSVGETGMVGSPKRREIGHGRL----AKRGVLAVMPDMDKFPYTVRVVSE 430
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ GA +AL D ++ + V +G + +
Sbjct: 431 ITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLSD---------I 481
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D + G I +Q + +++ LN AK ++ + +
Sbjct: 482 LGDEDHLGDMDFKVAGSRDG-ISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQA 540
Query: 238 IS 239
I+
Sbjct: 541 IN 542
Score = 95.7 bits (236), Expect = 5e-18, Method: Composition-based stats.
Identities = 37/232 (15%), Positives = 75/232 (32%), Gaps = 27/232 (11%)
Query: 14 ISLTRRV-SKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----HGWITAEYGMLPR 68
++L + ++ A + +V DT + T ++K + T G +P
Sbjct: 16 VTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVNYQERTYAAGRIPG 75
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
S R GR I R+I R +R + + Q+I +
Sbjct: 76 SFFRR------EGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVNPDIV 129
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+ GA A G A G + +++ E +D
Sbjct: 130 AMIGASAA-------------LSLSGIPFNGPNGAARVGYINDQYVLNPTQDELKESKLD 176
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
T++ ++ V+ AE S+D + ++ +I+ +++
Sbjct: 177 LVVAGTEA-AVLMVESEAEL--LSEDQMLGAVVFGHEQQQVVIQNINELVKE 225
>gi|2462716|emb|CAA71697.1| pnp [Yersinia enterocolitica]
Length = 711
Score = 146 bits (368), Expect = 3e-33, Method: Composition-based stats.
Identities = 44/242 (18%), Positives = 91/242 (37%), Gaps = 18/242 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR+++ +R + + V GS L G+T L TATL + + + +
Sbjct: 320 RIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQNIDELMGERTD 379
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + R+ G + R + +V+ + + + +
Sbjct: 380 SFLLHYNFPPYSVGETGMVGSPKRREIGHGRL----AKRGVLAVMPSPSEFPYTVRVVSE 435
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ GA +AL D ++ + V + + +
Sbjct: 436 ITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEDENFVVLSD---------I 486
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D + G I +Q + +++ LN AK ++ + +
Sbjct: 487 LGDEDHLGDMDFKVAGSRDG-ITALQMDIKIEGITREIMQVALNQAKGARLHILGVMEQA 545
Query: 238 IS 239
IS
Sbjct: 546 IS 547
Score = 93.8 bits (231), Expect = 2e-17, Method: Composition-based stats.
Identities = 37/232 (15%), Positives = 77/232 (33%), Gaps = 27/232 (11%)
Query: 14 ISLTRRV-SKYAEGSCLVKFGDTHLLTTATLEEKVPM----WIRNTKHGWITAEYGMLPR 68
+++ + ++ A + +V DT + T ++K + + T G +P
Sbjct: 21 VTIETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQSFFPLTVNYQERTYAAGRIPG 80
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
S R GR R+I R +R + S L Q+I +
Sbjct: 81 SFFRR------EGRPSEGETLTSRLIDRPIRPLFPDSFLNEVQVIATVVSVNPQINPDIV 134
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+ GA A G + A G + +++ E +D
Sbjct: 135 ALIGASAA-------------LSLSGIPFNGPIGAARVGFINDQYVLNPTTDELKESRLD 181
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
T +G ++ V+ A+ S+D + ++ +I+ +++
Sbjct: 182 LVVAGT-AGAVLMVESEADI--LSEDQMLGAVVFGHEQQQVVIENINALVAE 230
>gi|88607778|ref|YP_505346.1| polynucleotide phosphorylase/polyadenylase [Anaplasma
phagocytophilum HZ]
gi|123494955|sp|Q2GJV5|PNP_ANAPZ RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|88598841|gb|ABD44311.1| polyribonucleotide nucleotidyltransferase [Anaplasma
phagocytophilum HZ]
Length = 838
Score = 146 bits (368), Expect = 3e-33, Method: Composition-based stats.
Identities = 52/243 (21%), Positives = 86/243 (35%), Gaps = 18/243 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +Q+R I + + A GS L GDT L L +E++ K
Sbjct: 323 RIDGRAYDQIRNIEIEVDLISKAHGSALFTRGDTQALVITALGTPQDEQIVDGFDGDKRE 382
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P + G R+ G + RA+ V+ A I + +
Sbjct: 383 RFLLHYNFPPYAVGEASALRPPGRREIGHGKL----AWRAIHPVLPSKADFPYTIRVVSE 438
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ ++DG + A + GA +AL D ++ + + +G AI +
Sbjct: 439 ITESDGSSSMATVCGASLALMDTGVPLKSSVAGIAMGLIKEGDRYAILSD---------I 489
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T G I +Q + L+ AK+ +I+ V
Sbjct: 490 LGDEDYLGDMDFKVAGTREG-ITALQMDMKVKGIDFAVLGTALDQAKEGRFFIIEKMDRV 548
Query: 238 ISN 240
I
Sbjct: 549 IKE 551
Score = 94.5 bits (233), Expect = 1e-17, Method: Composition-based stats.
Identities = 40/227 (17%), Positives = 79/227 (34%), Gaps = 24/227 (10%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLE---EKVPMWIRNTKHGWITAEYGMLP 67
R +++ +++ A G+ +V +G T +L T + E V + + G +P
Sbjct: 14 RSLTIESGKIARQAGGAVVVDYGGTSVLATVVSQKSKEAVDFLPLTVQFLAKSYAVGKIP 73
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R G+ R I R+I R++R + ++ + A T
Sbjct: 74 GGFFKR------EGKPSDRETLISRIIDRSIRPLFPSGFSDEVAVVCNLLSYDASSPPET 127
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
A+ GA AL ++ + G I++ E S +
Sbjct: 128 VALIGASAALAISGIPFHCPVAGARIGYI-----------RGEGRYILNPSADELSVSAL 176
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
D + TD+ I+ V+ A ++ L + ++IK+
Sbjct: 177 DMFYARTDT-SILMVESEAHE--LTEAEMLGALQFGHEHCEEIIKVI 220
>gi|148244575|ref|YP_001219269.1| polynucleotide phosphorylase/polyadenylase [Candidatus
Vesicomyosocius okutanii HA]
gi|187611332|sp|A5CWW8|PNP_VESOH RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|146326402|dbj|BAF61545.1| polyribonucleotide nucleotidyltransferase [Candidatus
Vesicomyosocius okutanii HA]
Length = 695
Score = 146 bits (368), Expect = 3e-33, Method: Composition-based stats.
Identities = 39/243 (16%), Positives = 82/243 (33%), Gaps = 20/243 (8%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R+ GR +RE+ + + K GS L G+T L TL K +
Sbjct: 315 RIDGRNNETVRELKIETGILKNTHGSALFTRGETQALVVTTLGPKSDAQLIEKLESPERQ 374
Query: 62 ------EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115
Y P G + + R+ G R + + + + +
Sbjct: 375 NNYFLLHYNFPPYCVGETGRLATIKRREIGHGHL----ARRGITACLPSIEEFPYTVRVV 430
Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIV 175
++ +++G + A++ G+ ++L D ++ + V + +
Sbjct: 431 SEITESNGSSSMASVCGSSLSLMDAGVPIKAPIAGIAMGLVKENDRFTVLTD-------- 482
Query: 176 DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
+ ED D+D T G + +Q + + + + L AK+ +++
Sbjct: 483 -ILGDEDHLGDMDFKVAGTSRG-VNALQMDIKIQSITHEIMEIALKQAKEARLNILGQMN 540
Query: 236 DVI 238
VI
Sbjct: 541 QVI 543
Score = 102 bits (255), Expect = 3e-20, Method: Composition-based stats.
Identities = 35/217 (16%), Positives = 69/217 (31%), Gaps = 27/217 (12%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT----KHGWITAEYGMLPR 68
++L +++ A G+ L DT +L T ++ + T G +P
Sbjct: 15 VTLETGRIARQAHGAVLASMDDTQVLVTVVSSKETRPGQDFFPLSVDYIEKTYSTGKIPG 74
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
S R R + R+I R +R + + Q++I ++
Sbjct: 75 SFLKR------EARPSEKETLTSRLIDRTIRPLFPNGFMNEIQVLITVVSANSEVNPDII 128
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
++ G A + G G I++ Y E + D+D
Sbjct: 129 SMLGVSAA-------------LSISGVPFSRPIGGSRVGYSNGEYILNPTYIELTNSDLD 175
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKD 225
TD ++ V+ A S++ + A +
Sbjct: 176 MVVAGTDE-AVLMVESEANE--LSEEIMLGAVVYAHE 209
>gi|299771757|ref|YP_003733783.1| polynucleotide phosphorylase/polyadenylase [Acinetobacter sp. DR1]
gi|298701845|gb|ADI92410.1| polynucleotide phosphorylase/polyadenylase [Acinetobacter sp. DR1]
Length = 697
Score = 146 bits (368), Expect = 3e-33, Method: Composition-based stats.
Identities = 49/239 (20%), Positives = 88/239 (36%), Gaps = 10/239 (4%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R+ GR +R I + V A GS L G+T L T TL + +T G T
Sbjct: 317 RIDGRDTKTVRGIDVQVGVLDRAHGSALFTRGETQALVTTTLGNTRDALMVDTLSGTKTD 376
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
+ + V R R+ R +++V+ + I I D+ ++
Sbjct: 377 NFMLHYNFPAYSVGETGRESGPKRREIGHGRLARRGVQAVLPAADRFPYVIRIVSDITES 436
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
+G + A++ GA ++L D ++ + V +G A+ + E
Sbjct: 437 NGSSSMASVCGASLSLMDAGVPLKAPVAGIAMGLVKEGERFAVLSD---------ILGDE 487
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
D D+D + +G I +Q + +++ LN A ++ VIS
Sbjct: 488 DHLGDMDFKVAGSANG-ITALQMDIKIEGITEEIMEVALNQAFAGRMHILNEMNKVISR 545
Score = 88.4 bits (217), Expect = 7e-16, Method: Composition-based stats.
Identities = 38/228 (16%), Positives = 73/228 (32%), Gaps = 28/228 (12%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----HGWITAEYGMLPR 68
+ L V++ A + L+ G +L + K + G +P
Sbjct: 18 VVLETGRVARQAN-TVLITMGGVTVLVAVVAQPKAKAGQDFFPLTVNYQEKQYAAGRIPG 76
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
G R GR I R+I R +R + Q+ A
Sbjct: 77 GYGKR------EGRASEAETLISRLIDRPIRPLFPEGYFNEIQVTATVVSSDKTMDADIA 130
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+ G AL +G + G++ G +++ ++ + D+D
Sbjct: 131 AMLGTSAALSIAGT-------------PFRGPIGGARVGLINGEYVLNPNFEQLKESDLD 177
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
T+S ++ V+ A+ S+D + D + I+ K+
Sbjct: 178 LVVAGTES-AVLMVESEAKE--LSEDQMLGAVLFGHDEMQIAIQAIKE 222
>gi|238750129|ref|ZP_04611632.1| Polyribonucleotide nucleotidyltransferase [Yersinia rohdei ATCC
43380]
gi|238711673|gb|EEQ03888.1| Polyribonucleotide nucleotidyltransferase [Yersinia rohdei ATCC
43380]
Length = 707
Score = 146 bits (368), Expect = 3e-33, Method: Composition-based stats.
Identities = 44/242 (18%), Positives = 91/242 (37%), Gaps = 18/242 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR+++ +R + + V GS L G+T L TATL + + + +
Sbjct: 315 RIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQNIDELMGERTD 374
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P G + R+ G + R + +V+ +A + + +
Sbjct: 375 SFLLHYNFPPYCVGETGMVGSPKRREIGHGRL----AKRGVLAVMPNAADFPYTVRVVSE 430
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ GA +AL D ++ + V + + +
Sbjct: 431 ITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEDENFVVLSD---------I 481
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D + G I +Q + +++ LN AK ++ + +
Sbjct: 482 LGDEDHLGDMDFKVAGSREG-ITALQMDIKIEGITREIMQVALNQAKGARLHILGVMEQA 540
Query: 238 IS 239
IS
Sbjct: 541 IS 542
Score = 90.7 bits (223), Expect = 1e-16, Method: Composition-based stats.
Identities = 38/232 (16%), Positives = 77/232 (33%), Gaps = 27/232 (11%)
Query: 14 ISLTRRV-SKYAEGSCLVKFGDTHLLTTATLEEKVPM----WIRNTKHGWITAEYGMLPR 68
++L + ++ A + +V DT + T ++K + + T G +P
Sbjct: 16 VTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQSFFPLTVNYQERTYAAGRIPG 75
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
S R GR R+I R +R + S L Q+I +
Sbjct: 76 SFFRR------EGRPSEGETLTSRLIDRPIRPLFPDSFLNEVQVIATVVSVNPQINPDIV 129
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+ GA A G + A G + +++ E +D
Sbjct: 130 ALIGASAA-------------LSLSGIPFNGPIGAARVGFINDQYVLNPTTDELKESRLD 176
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
T +G ++ V+ A+ S+D + ++ +I+ +++
Sbjct: 177 LVVAGT-AGAVLMVESEADI--LSEDQMLGAVVFGHEQQQIVIENINALVAE 225
>gi|47569084|ref|ZP_00239773.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus G9241]
gi|49478386|ref|YP_037868.1| polynucleotide phosphorylase/polyadenylase [Bacillus thuringiensis
serovar konkukian str. 97-27]
gi|52141682|ref|YP_085148.1| polynucleotide phosphorylase/polyadenylase [Bacillus cereus E33L]
gi|118479027|ref|YP_896178.1| polynucleotide phosphorylase/polyadenylase [Bacillus thuringiensis
str. Al Hakam]
gi|165872621|ref|ZP_02217252.1| polyribonucleotide nucleotidyltransferase [Bacillus anthracis str.
A0488]
gi|167635853|ref|ZP_02394162.1| polyribonucleotide nucleotidyltransferase [Bacillus anthracis str.
A0442]
gi|167639866|ref|ZP_02398135.1| polyribonucleotide nucleotidyltransferase [Bacillus anthracis str.
A0193]
gi|170687834|ref|ZP_02879048.1| polyribonucleotide nucleotidyltransferase [Bacillus anthracis str.
A0465]
gi|177652128|ref|ZP_02934674.1| polyribonucleotide nucleotidyltransferase [Bacillus anthracis str.
A0174]
gi|190568447|ref|ZP_03021354.1| polyribonucleotide nucleotidyltransferase [Bacillus anthracis
Tsiankovskii-I]
gi|196042164|ref|ZP_03109447.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus
NVH0597-99]
gi|196044582|ref|ZP_03111817.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus 03BB108]
gi|227813285|ref|YP_002813294.1| polyribonucleotide nucleotidyltransferase [Bacillus anthracis str.
CDC 684]
gi|228928856|ref|ZP_04091888.1| Polyribonucleotide nucleotidyltransferase [Bacillus thuringiensis
serovar pondicheriensis BGSC 4BA1]
gi|228935122|ref|ZP_04097949.1| Polyribonucleotide nucleotidyltransferase [Bacillus thuringiensis
serovar andalousiensis BGSC 4AW1]
gi|228986950|ref|ZP_04147076.1| Polyribonucleotide nucleotidyltransferase [Bacillus thuringiensis
serovar tochigiensis BGSC 4Y1]
gi|229092848|ref|ZP_04223982.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus
Rock3-42]
gi|229123320|ref|ZP_04252524.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus 95/8201]
gi|229157384|ref|ZP_04285462.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus ATCC
4342]
gi|229186044|ref|ZP_04313214.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus BGSC
6E1]
gi|254683486|ref|ZP_05147346.1| polynucleotide phosphorylase/polyadenylase [Bacillus anthracis str.
CNEVA-9066]
gi|254735845|ref|ZP_05193551.1| polynucleotide phosphorylase/polyadenylase [Bacillus anthracis str.
Western North America USA6153]
gi|254739629|ref|ZP_05197323.1| polynucleotide phosphorylase/polyadenylase [Bacillus anthracis str.
Kruger B]
gi|254755998|ref|ZP_05208029.1| polynucleotide phosphorylase/polyadenylase [Bacillus anthracis str.
Vollum]
gi|81395117|sp|Q6HF08|PNP_BACHK RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|81686592|sp|Q636L9|PNP_BACCZ RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|187470934|sp|A0RHH8|PNP_BACAH RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|254782704|sp|C3L7C0|PNP_BACAC RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|47554246|gb|EAL12608.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus G9241]
gi|49329942|gb|AAT60588.1| polyribonucleotide nucleotidyltransferase [Bacillus thuringiensis
serovar konkukian str. 97-27]
gi|51975151|gb|AAU16701.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus E33L]
gi|118418252|gb|ABK86671.1| polyribonucleotide nucleotidyltransferase [Bacillus thuringiensis
str. Al Hakam]
gi|164711653|gb|EDR17199.1| polyribonucleotide nucleotidyltransferase [Bacillus anthracis str.
A0488]
gi|167512267|gb|EDR87644.1| polyribonucleotide nucleotidyltransferase [Bacillus anthracis str.
A0193]
gi|167528810|gb|EDR91568.1| polyribonucleotide nucleotidyltransferase [Bacillus anthracis str.
A0442]
gi|170668150|gb|EDT18899.1| polyribonucleotide nucleotidyltransferase [Bacillus anthracis str.
A0465]
gi|172082497|gb|EDT67562.1| polyribonucleotide nucleotidyltransferase [Bacillus anthracis str.
A0174]
gi|190560451|gb|EDV14429.1| polyribonucleotide nucleotidyltransferase [Bacillus anthracis
Tsiankovskii-I]
gi|196024617|gb|EDX63289.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus 03BB108]
gi|196027016|gb|EDX65640.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus
NVH0597-99]
gi|227006240|gb|ACP15983.1| polyribonucleotide nucleotidyltransferase [Bacillus anthracis str.
CDC 684]
gi|228597463|gb|EEK55113.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus BGSC
6E1]
gi|228626111|gb|EEK82860.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus ATCC
4342]
gi|228660096|gb|EEL15732.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus 95/8201]
gi|228690470|gb|EEL44253.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus
Rock3-42]
gi|228772728|gb|EEM21168.1| Polyribonucleotide nucleotidyltransferase [Bacillus thuringiensis
serovar tochigiensis BGSC 4Y1]
gi|228824487|gb|EEM70292.1| Polyribonucleotide nucleotidyltransferase [Bacillus thuringiensis
serovar andalousiensis BGSC 4AW1]
gi|228830663|gb|EEM76268.1| Polyribonucleotide nucleotidyltransferase [Bacillus thuringiensis
serovar pondicheriensis BGSC 4BA1]
Length = 712
Score = 146 bits (368), Expect = 3e-33, Method: Composition-based stats.
Identities = 44/244 (18%), Positives = 85/244 (34%), Gaps = 18/244 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56
+R GR+ +++R ++ + GS L G T L+ T + ++ + +
Sbjct: 315 IRPDGRKGDEIRPLASEVGILSRTHGSGLFTRGQTQALSICTLGALGDVQILDGLGVEES 374
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y S G R+ G RAL V+ + +
Sbjct: 375 KRFMHHYNFPSFSVGETRPMRGPGRREIGHGALG----ERALEPVIPSEKDFPYTVRLVS 430
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V++++G T A+I G+ +A+ D ++ + V G + D
Sbjct: 431 EVLESNGSTSQASICGSTLAMMDAGVPLKAPVAGIAMGLVKTGE---------HYTILSD 481
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T G + +Q + S++ L AK ++
Sbjct: 482 IQGMEDHLGDMDFKVAGTAHG-VTALQMDIKIDGLSREILEEALQQAKVGRVHILNHMLS 540
Query: 237 VISN 240
VI+
Sbjct: 541 VIAE 544
Score = 114 bits (284), Expect = 1e-23, Method: Composition-based stats.
Identities = 43/231 (18%), Positives = 90/231 (38%), Gaps = 26/231 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEK---VPMWIRNTKHGWITAEYGMLP 67
R++++ ++K A G+ LV++GDT +L+TAT ++ V + + G +P
Sbjct: 15 RQLTVETGQLAKQANGAVLVRYGDTAVLSTATASKEAKNVDFFPLTVNYEERLYAVGKIP 74
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R GR ++ R+I R +R + Q++ + D +
Sbjct: 75 GGFIKR------EGRPSEKAILASRLIDRPIRPLFADGFRNEVQVVSIVMSVDQDCSSEM 128
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
AA+ G+ +A +G +A + G + G +++ + D+
Sbjct: 129 AAMLGSSLA-------------LSISDIPFEGPIAGATVGRINGEFVINPTVEQQEQSDI 175
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
T I V+ A++ ++ + D I LI Q++++
Sbjct: 176 HLVVAGTKD-AINMVEAGADQVP--EETMLEAIMFGHDEIKRLIAFQEEIV 223
>gi|283788208|ref|YP_003368073.1| polyribonucleotide nucleotidyltransferase [Citrobacter rodentium
ICC168]
gi|282951662|emb|CBG91362.1| polyribonucleotide nucleotidyltransferase [Citrobacter rodentium
ICC168]
Length = 734
Score = 146 bits (368), Expect = 3e-33, Method: Composition-based stats.
Identities = 45/242 (18%), Positives = 92/242 (38%), Gaps = 18/242 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR+++ +R + + V GS L G+T L TATL + +V + +
Sbjct: 338 RIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVLDELMGERTD 397
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + R+ G + R + +V+ + + +
Sbjct: 398 SFLFHYNFPPYSVGETGMVGSPKRREIGHGRL----AKRGVLAVMPDMDKFPYTVRVVSE 453
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ GA +AL D ++ + V +G + +
Sbjct: 454 ITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNFVVLSD---------I 504
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D + G I +Q + +++ LN AK ++ + +
Sbjct: 505 LGDEDHLGDMDFKVAGSRDG-ISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQA 563
Query: 238 IS 239
I+
Sbjct: 564 IN 565
Score = 96.1 bits (237), Expect = 4e-18, Method: Composition-based stats.
Identities = 38/232 (16%), Positives = 76/232 (32%), Gaps = 27/232 (11%)
Query: 14 ISLTRRV-SKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----HGWITAEYGMLPR 68
++L + ++ A + +V DT + T ++K + T G +P
Sbjct: 39 VTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVNYQERTYAAGRIPG 98
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
S R GR I R+I R +R + + Q+I +
Sbjct: 99 SFFRR------EGRPSEGETLIARLIDRPVRPLFPEGFVNEVQVIATVVSVNPQVNPDIV 152
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+ GA A G + A G + +++ E +D
Sbjct: 153 AMIGASAA-------------LSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLD 199
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
T++ ++ V+ AE S+D + ++ +I+ D++
Sbjct: 200 LVVAGTEA-AVLMVESEAEL--LSEDQMLGAVVFGHEQQQVVIQAINDLVKE 248
>gi|228947527|ref|ZP_04109817.1| Polyribonucleotide nucleotidyltransferase [Bacillus thuringiensis
serovar monterrey BGSC 4AJ1]
gi|228812047|gb|EEM58378.1| Polyribonucleotide nucleotidyltransferase [Bacillus thuringiensis
serovar monterrey BGSC 4AJ1]
Length = 712
Score = 146 bits (368), Expect = 3e-33, Method: Composition-based stats.
Identities = 44/244 (18%), Positives = 85/244 (34%), Gaps = 18/244 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56
+R GR+ +++R ++ + GS L G T L+ T + ++ + +
Sbjct: 315 IRPDGRKGDEIRPLASEVGILSRTHGSGLFTRGQTQALSICTLGALGDVQILDGLGVEES 374
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y S G R+ G RAL V+ + +
Sbjct: 375 KRFMHHYNFPSFSVGETRPMRGPGRREIGHGALG----ERALEPVIPSEKDFPYTVRLVS 430
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V++++G T A+I G+ +A+ D ++ + V G + D
Sbjct: 431 EVLESNGSTSQASICGSTLAMMDAGVPLKAPVAGIAMGLVKTGE---------HYTILSD 481
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T G + +Q + S++ L AK ++
Sbjct: 482 IQGMEDHLGDMDFKVAGTAHG-VTALQMDIKIDGLSREILEEALQQAKVGRVHILNHMLS 540
Query: 237 VISN 240
VI+
Sbjct: 541 VIAE 544
Score = 114 bits (284), Expect = 1e-23, Method: Composition-based stats.
Identities = 43/231 (18%), Positives = 90/231 (38%), Gaps = 26/231 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEK---VPMWIRNTKHGWITAEYGMLP 67
R++++ ++K A G+ LV++GDT +L+TAT ++ V + + G +P
Sbjct: 15 RQLTVETGQLAKQANGAVLVRYGDTAVLSTATASKEAKNVDFFPLTVNYEERLYAVGKIP 74
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R GR ++ R+I R +R + Q++ + D +
Sbjct: 75 GGFIKR------EGRPSEKAILASRLIDRPIRPLFADGFRNEVQVVSIVMSVDQDCSSEM 128
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
AA+ G+ +A +G +A + G + G +++ + D+
Sbjct: 129 AAMLGSSLA-------------LSISDIPFEGPIAGATVGRINGEFVINPTVEQQEQSDI 175
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
T I V+ A++ ++ + D I LI Q++++
Sbjct: 176 HLVVAGTKD-AINMVEAGADQVP--EETMLEAIMFGHDEIKRLIAFQEEIV 223
>gi|225865786|ref|YP_002751164.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus 03BB102]
gi|254782705|sp|C1EP29|PNP_BACC3 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|225790852|gb|ACO31069.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus 03BB102]
Length = 712
Score = 146 bits (368), Expect = 3e-33, Method: Composition-based stats.
Identities = 44/244 (18%), Positives = 85/244 (34%), Gaps = 18/244 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56
+R GR+ +++R ++ + GS L G T L+ T + ++ + +
Sbjct: 315 IRPDGRKGDEIRPLASEVGILSRTHGSGLFTRGQTQALSICTLGALGDVQILDGLGVEES 374
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y S G R+ G RAL V+ + +
Sbjct: 375 KRFMHHYNFPSFSVGETRPMRGPGRREIGHGALG----ERALEPVIPSEKDFPYTVRLVS 430
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V++++G T A+I G+ +A+ D ++ + V G + D
Sbjct: 431 EVLESNGSTSQASICGSTLAMMDAGVPLKAPVAGIAMGLVKTGE---------HYTILSD 481
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T G + +Q + S++ L AK ++
Sbjct: 482 IQGMEDHLGDMDFKVAGTAHG-VTALQMDIKIDGLSREILEEALQQAKVGRVHILNHMLS 540
Query: 237 VISN 240
VI+
Sbjct: 541 VIAE 544
Score = 114 bits (285), Expect = 1e-23, Method: Composition-based stats.
Identities = 43/231 (18%), Positives = 90/231 (38%), Gaps = 26/231 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEK---VPMWIRNTKHGWITAEYGMLP 67
R++++ ++K A G+ LV++GDT +L+TAT ++ V + + G +P
Sbjct: 15 RQLTVETGQLAKQANGAVLVRYGDTAVLSTATASKEAKNVDFFPLTVNYEERLYAVGKIP 74
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R GR ++ R+I R +R + Q++ + D +
Sbjct: 75 GGFIKR------EGRPSEKAILASRLIDRPIRPLFADGFRNEVQVVSIVMSVDQDCSSEM 128
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
AA+ G+ +A +G +A + G + G +++ + D+
Sbjct: 129 AAMLGSSLA-------------LSISDIPFEGPIAGTTVGRINGEFVINPTVEQQEQSDI 175
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
T I V+ A++ ++ + D I LI Q++++
Sbjct: 176 HLVVAGTKD-AINMVEAGADQVP--EETMLEAIMFGHDEIKRLIAFQEEIV 223
>gi|170018584|ref|YP_001723538.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli ATCC
8739]
gi|189037305|sp|B1IQV7|PNP_ECOLC RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|169753512|gb|ACA76211.1| Polyribonucleotide nucleotidyltransferase [Escherichia coli ATCC
8739]
Length = 711
Score = 146 bits (368), Expect = 3e-33, Method: Composition-based stats.
Identities = 45/242 (18%), Positives = 92/242 (38%), Gaps = 18/242 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR+++ +R + + V GS L G+T L TATL + +V + +
Sbjct: 315 RIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVLDELMGERTD 374
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + R+ G + R + +V+ + + +
Sbjct: 375 TFLFHYNFPPYSVGETGMVGSPKRREIGHGRL----AKRGVLAVMPDMDKFPYTVRVVSE 430
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ GA +AL D ++ + V +G + +
Sbjct: 431 ITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLSD---------I 481
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D + G I +Q + +++ LN AK ++ + +
Sbjct: 482 LGDEDHLGDMDFKVAGSRDG-ISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQA 540
Query: 238 IS 239
I+
Sbjct: 541 IN 542
Score = 97.2 bits (240), Expect = 2e-18, Method: Composition-based stats.
Identities = 37/232 (15%), Positives = 76/232 (32%), Gaps = 27/232 (11%)
Query: 14 ISLTRRV-SKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----HGWITAEYGMLPR 68
++L + ++ A + +V DT + T ++K + T G +P
Sbjct: 16 VTLETGIMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVNYQERTYAAGRIPG 75
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
S R GR I R+I R +R + + Q+I +
Sbjct: 76 SFFRR------EGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVNPDIV 129
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+ GA A G + A G + +++ E +D
Sbjct: 130 AMIGASAA-------------LSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLD 176
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
T++ ++ V+ AE S+D + ++ +I+ +++
Sbjct: 177 LVVAGTEA-AVLMVESEAEL--LSEDQMLGAVVFGHEQQQVVIQNINELVKE 225
>gi|30263811|ref|NP_846188.1| polynucleotide phosphorylase/polyadenylase [Bacillus anthracis str.
Ames]
gi|47529234|ref|YP_020583.1| polynucleotide phosphorylase/polyadenylase [Bacillus anthracis str.
'Ames Ancestor']
gi|49186657|ref|YP_029909.1| polynucleotide phosphorylase/polyadenylase [Bacillus anthracis str.
Sterne]
gi|65321134|ref|ZP_00394093.1| COG1185: Polyribonucleotide nucleotidyltransferase (polynucleotide
phosphorylase) [Bacillus anthracis str. A2012]
gi|170706809|ref|ZP_02897267.1| polyribonucleotide nucleotidyltransferase [Bacillus anthracis str.
A0389]
gi|229603609|ref|YP_002868046.1| polyribonucleotide nucleotidyltransferase [Bacillus anthracis str.
A0248]
gi|254759341|ref|ZP_05211366.1| polynucleotide phosphorylase/polyadenylase [Bacillus anthracis str.
Australia 94]
gi|81583685|sp|Q81WM8|PNP_BACAN RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|254782703|sp|C3P5L0|PNP_BACAA RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|30258455|gb|AAP27674.1| polyribonucleotide nucleotidyltransferase [Bacillus anthracis str.
Ames]
gi|47504382|gb|AAT33058.1| polyribonucleotide nucleotidyltransferase [Bacillus anthracis str.
'Ames Ancestor']
gi|49180584|gb|AAT55960.1| polyribonucleotide nucleotidyltransferase [Bacillus anthracis str.
Sterne]
gi|170128227|gb|EDS97096.1| polyribonucleotide nucleotidyltransferase [Bacillus anthracis str.
A0389]
gi|229268017|gb|ACQ49654.1| polyribonucleotide nucleotidyltransferase [Bacillus anthracis str.
A0248]
Length = 712
Score = 146 bits (368), Expect = 3e-33, Method: Composition-based stats.
Identities = 44/244 (18%), Positives = 85/244 (34%), Gaps = 18/244 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56
+R GR+ +++R ++ + GS L G T L+ T + ++ + +
Sbjct: 315 IRPDGRKGDEIRPLASEVGILSRTHGSGLFTRGQTQALSICTLGALGDVQILDGLGVEES 374
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y S G R+ G RAL V+ + +
Sbjct: 375 KRFMHHYNFPSFSVGETRPMRGPGRREIGHGALG----ERALEPVIPSEKDFPYTVRLVS 430
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V++++G T A+I G+ +A+ D ++ + V G + D
Sbjct: 431 EVLESNGSTSQASICGSTLAMMDAGVPLKAPVAGIAMGLVKTGE---------HYTILSD 481
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T G + +Q + S++ L AK ++
Sbjct: 482 IQGMEDHLGDMDFKVAGTAHG-VTALQMDIKIDGLSREILEEALQQAKVGRVHILNHMLS 540
Query: 237 VISN 240
VI+
Sbjct: 541 VIAE 544
Score = 114 bits (285), Expect = 1e-23, Method: Composition-based stats.
Identities = 43/231 (18%), Positives = 90/231 (38%), Gaps = 26/231 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEK---VPMWIRNTKHGWITAEYGMLP 67
R++++ ++K A G+ LV++GDT +L+TAT ++ V + + G +P
Sbjct: 15 RQLTVETGQLAKQANGAVLVRYGDTAVLSTATASKEAKNVDFFPLTVNYEERLYAVGKIP 74
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R GR ++ R+I R +R + Q++ + D +
Sbjct: 75 GGFIKR------EGRPSEKAILASRLIDRPIRPLFADGFRNEVQVVNIVMSVDQDCSSEM 128
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
AA+ G+ +A +G +A + G + G +++ + D+
Sbjct: 129 AAMLGSSLA-------------LSISDIPFEGPIAGATVGRINGEFVINPTVEQQEQSDI 175
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
T I V+ A++ ++ + D I LI Q++++
Sbjct: 176 HLVVAGTKD-AINMVEAGADQVP--EETMLEAIMFGHDEIKRLIAFQEEIV 223
>gi|254722007|ref|ZP_05183796.1| polynucleotide phosphorylase/polyadenylase [Bacillus anthracis str.
A1055]
Length = 712
Score = 146 bits (368), Expect = 3e-33, Method: Composition-based stats.
Identities = 44/244 (18%), Positives = 85/244 (34%), Gaps = 18/244 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56
+R GR+ +++R ++ + GS L G T L+ T + ++ + +
Sbjct: 315 IRPDGRKGDEIRPLASEVGILSRTHGSGLFTRGQTQALSICTLGALGDVQILDGLGVEES 374
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y S G R+ G RAL V+ + +
Sbjct: 375 KRFMHHYNFPSFSVGETRPMRGPGRREIGHGALG----ERALEPVIPSEKDFPYTVRLVS 430
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V++++G T A+I G+ +A+ D ++ + V G + D
Sbjct: 431 EVLESNGSTSQASICGSTLAMMDAGVPLKAPVAGIAMGLVKTGE---------HYTILSD 481
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T G + +Q + S++ L AK ++
Sbjct: 482 IQGMEDHLGDMDFKVAGTAHG-VTALQMDIKIDGLSREILEEALQQAKVGRVHILNHMLS 540
Query: 237 VISN 240
VI+
Sbjct: 541 VIAE 544
Score = 114 bits (286), Expect = 8e-24, Method: Composition-based stats.
Identities = 42/231 (18%), Positives = 90/231 (38%), Gaps = 26/231 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEK---VPMWIRNTKHGWITAEYGMLP 67
R++++ ++K A G+ LV++GDT +L+TAT ++ V + + G +P
Sbjct: 15 RQLTVETGQLAKQANGAVLVRYGDTAVLSTATASKEAKNVDFFPLTVNYEERLYAVGKIP 74
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R GR ++ R+I R +R + Q++ + D +
Sbjct: 75 GGFIKR------EGRPSEKAILASRLIDRPIRPLFADGFRNEVQVVSIVMSVDQDCSSEM 128
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
AA+ G+ +A +G +A + G + G +++ + D+
Sbjct: 129 AAMLGSSLA-------------LSISDIPFEGPIAGATVGRINGEFVINPTVEQQEQSDI 175
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
T I V+ A++ ++ + + I LI Q++++
Sbjct: 176 HLVVAGTKD-AINMVEAGADQVP--EETMLEAIMFGHEEIKRLIAFQEEIV 223
>gi|118602474|ref|YP_903689.1| polynucleotide phosphorylase/polyadenylase [Candidatus Ruthia
magnifica str. Cm (Calyptogena magnifica)]
gi|187611284|sp|A1AWB1|PNP_RUTMC RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|118567413|gb|ABL02218.1| Polyribonucleotide nucleotidyltransferase [Candidatus Ruthia
magnifica str. Cm (Calyptogena magnifica)]
Length = 695
Score = 146 bits (368), Expect = 3e-33, Method: Composition-based stats.
Identities = 44/243 (18%), Positives = 90/243 (37%), Gaps = 20/243 (8%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +RE+ + V + GS L G+T L TL E ++ + +++
Sbjct: 315 RIDGRDNETVRELKIETGVLENTHGSALFTRGETQALVVTTLGSKREAQLIEKLESSERQ 374
Query: 58 WITA--EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115
Y P G + R+ G + + R + + + + +
Sbjct: 375 NDYFLLHYNFPPYCVGEIGRVGTTKRREIGHGRL----VRRGIAACLPSIEEFPYTVRVV 430
Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIV 175
++ +++G + A+I GA ++L D ++ + V +G +
Sbjct: 431 SEITESNGSSSMASICGASLSLMDAGVPIKAPVAGIAMGLVKEGD---------RFTILT 481
Query: 176 DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
D+ ED D+D T G I +Q + +++ L AK+ +++
Sbjct: 482 DILGDEDHLGDMDFKVAGTSRG-INALQMDIKIQGITREIMEIALKQAKEARLNILGQMN 540
Query: 236 DVI 238
VI
Sbjct: 541 QVI 543
Score = 111 bits (277), Expect = 8e-23, Method: Composition-based stats.
Identities = 39/233 (16%), Positives = 75/233 (32%), Gaps = 31/233 (13%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT----KHGWITAEYGMLPR 68
I+L +++ A G+ LV DT +L T +K+ + T G +P
Sbjct: 15 ITLETGRIARQAHGAVLVSMDDTQVLVTVVGSKKMHPGQDFFPLSVDYIEKTYAAGKIPG 74
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
R R + R+I R +R + + Q++I ++
Sbjct: 75 GFLKR------EARPSEKETLTSRLIDRPIRPLFPNGFMNEVQVLITVISANSEVDPDII 128
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
++ G A G + + G G ++ Y E D+D
Sbjct: 129 SMLGVSAA-------------LSISGIPFNGPIGSARVGYSNGKYTLNPTYTELVDSDLD 175
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKD----RIADLIKLQKDV 237
T I+ V+ +E + S+ + A + I ++ + V
Sbjct: 176 MVVAGT-DKAILMVE--SEASELSEKIILDAIIYAHEQYQVAITNIAEFVTQV 225
>gi|22299736|ref|NP_682983.1| polynucleotide phosphorylase/polyadenylase [Thermosynechococcus
elongatus BP-1]
gi|81742443|sp|Q8DGW9|PNP_THEEB RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|22295920|dbj|BAC09745.1| polyribonucleotide nucleotidyltransferase [Thermosynechococcus
elongatus BP-1]
Length = 715
Score = 146 bits (368), Expect = 3e-33, Method: Composition-based stats.
Identities = 45/243 (18%), Positives = 86/243 (35%), Gaps = 19/243 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSK-YAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTK 55
+R+ GR+ +++R I V GS L G T +++ TL + + +
Sbjct: 322 VRVDGRRLDEVRPIWCEVGVLPERVHGSALFNRGLTQVMSVTTLGSPADAQALDDLHPED 381
Query: 56 HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115
Y P S G + R+ G RAL V+ I +
Sbjct: 382 SKRYLHHYNFPPYSVGEVKPLRSPGRREIGHGAL----AERALEPVLPPKEEFPYVIRVV 437
Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIV 175
+V+ +DG T ++ G+ ++L D + + + + +G+ +
Sbjct: 438 SEVLSSDGSTSMGSVCGSTLSLMDAGVPIRKPVSGAAMGLIKEGNEV---------RILT 488
Query: 176 DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
D+ ED D+D TDSG I +Q + + A+ +++
Sbjct: 489 DIQGIEDFLGDMDFKVAGTDSG-ITALQMDMKITGLPVAVIQQAIEQARPARLHILEKML 547
Query: 236 DVI 238
V+
Sbjct: 548 AVL 550
Score = 99.1 bits (245), Expect = 5e-19, Method: Composition-based stats.
Identities = 47/237 (19%), Positives = 87/237 (36%), Gaps = 26/237 (10%)
Query: 8 ENQMREISLTRR-VSKYAEGSCLVKFGDTHLLTTAT---LEEKVPMWIRNTKHGWITAEY 63
R+I + + + A GS L+ G+T +L TA E + +
Sbjct: 9 PLDGRDIKVVLQKFAPQAAGSILISSGETAVLVTANRAAAREGIDFLPLVVDYEERLYAA 68
Query: 64 GMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADG 123
G +P R GR ++ I R+I R LR + Q++ + +
Sbjct: 69 GRIPGGFLRR------EGRPPEKAILIGRLIDRPLRPLFPQWLRDDLQVVATTVSLDENA 122
Query: 124 GTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDS 183
A+TGA +A+ G +AA+ G++ +++ Y E
Sbjct: 123 PPDVLAVTGASIAVLLAQI-------------PFNGPMAAVRVGLVGDEFVINPTYKEIE 169
Query: 184 TIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
+D + G +V V+ A + ++ A + I DLI+ Q+D++
Sbjct: 170 RGGLDLVVAGSPDG-VVMVEAGANE--LPEADMIEAIDFAYEVIRDLIQAQRDLLKE 223
>gi|218904934|ref|YP_002452768.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus AH820]
gi|226702597|sp|B7JJ84|PNP_BACC0 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|218539646|gb|ACK92044.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus AH820]
Length = 712
Score = 146 bits (367), Expect = 3e-33, Method: Composition-based stats.
Identities = 44/244 (18%), Positives = 85/244 (34%), Gaps = 18/244 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56
+R GR+ +++R ++ + GS L G T L+ T + ++ + +
Sbjct: 315 IRPDGRKGDEIRPLASEVGILSRTHGSGLFTRGQTQALSICTLGALGDVQILDGLGVEES 374
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y S G R+ G RAL V+ + +
Sbjct: 375 KRFMHHYNFPSFSVGETRPMRGPGRREIGHGALG----ERALEPVIPSEKDFPYTVRLVS 430
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V++++G T A+I G+ +A+ D ++ + V G + D
Sbjct: 431 EVLESNGSTSQASICGSTLAMMDAGVPLKAPVAGIAMGLVKTGE---------HYTILSD 481
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T G + +Q + S++ L AK ++
Sbjct: 482 IQGMEDHLGDMDFKVAGTAHG-VTALQMDIKIDGLSREILEEALQQAKVGRVHILNHMLS 540
Query: 237 VISN 240
VI+
Sbjct: 541 VIAE 544
Score = 114 bits (284), Expect = 1e-23, Method: Composition-based stats.
Identities = 43/231 (18%), Positives = 90/231 (38%), Gaps = 26/231 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEK---VPMWIRNTKHGWITAEYGMLP 67
R++++ ++K A G+ LV++GDT +L+TAT ++ V + + G +P
Sbjct: 15 RQLTVETGQLAKQANGAVLVRYGDTAVLSTATASKEAKNVDFFPLTVNYEERLYAVGKIP 74
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R GR ++ R+I R +R + Q++ + D +
Sbjct: 75 GGFIKR------EGRPSEKAILASRLIDRPIRPLFADGFRNEVQVVSIVMSVDQDCSSEM 128
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
AA+ G+ +A +G +A + G + G +++ + D+
Sbjct: 129 AAMLGSSLA-------------LSISDIPFEGPIAGATVGRINGEFVINPTVEQQEQSDI 175
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
T I V+ A++ ++ + D I LI Q++++
Sbjct: 176 HLVVAGTKD-AINMVEAGADQVP--EETMLEAIMFGHDEIKRLIAFQEEIV 223
>gi|50119663|ref|YP_048830.1| polynucleotide phosphorylase/polyadenylase [Pectobacterium
atrosepticum SCRI1043]
gi|81646171|sp|Q6D9A1|PNP_ERWCT RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|49610189|emb|CAG73631.1| polyribonucleotide nucleotidyltransferase [Pectobacterium
atrosepticum SCRI1043]
Length = 706
Score = 146 bits (367), Expect = 3e-33, Method: Composition-based stats.
Identities = 44/242 (18%), Positives = 90/242 (37%), Gaps = 18/242 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVP----MWIRNTKHG 57
R+ GR+++ +R + + V GS L G+T L TATL + + +
Sbjct: 315 RIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTERDAQNIDELTGERTD 374
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P G + R+ G + R + +V+ + + + +
Sbjct: 375 RFLLHYNFPPYCVGETGMVGSPKRREIGHGRL----AKRGVLAVMPKANEFPYTVRVVSE 430
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ GA +AL D ++ + V +G + +
Sbjct: 431 ITESNGSSSMASVCGASLALMDAGVPIKSAVAGIAMGLVKEGDNFVVLSD---------I 481
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D + G I +Q + +++ LN AK ++ + +
Sbjct: 482 LGDEDHLGDMDFKVAGSREG-ITALQMDIKIEGITREIMQVALNQAKGARLHILGVMEQA 540
Query: 238 IS 239
IS
Sbjct: 541 IS 542
Score = 90.7 bits (223), Expect = 2e-16, Method: Composition-based stats.
Identities = 36/232 (15%), Positives = 70/232 (30%), Gaps = 27/232 (11%)
Query: 14 ISLTRRV-SKYAEGSCLVKFGDTHLLTTATLEEKVPM----WIRNTKHGWITAEYGMLPR 68
++L + ++ A + +V DT + T + + + T G P
Sbjct: 16 VTLETGMMARQATAAVMVSMDDTAVFVTVVGAKNAKPGQSFFPLTVNYQERTYAAGRFPG 75
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
R GR R+I R +R + L Q+I +
Sbjct: 76 GFFRR------EGRPSEGETLTSRLIDRPIRPLFPEGFLNEVQVIATVVSVNPQVSPDIV 129
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+ GA A G + G L +++ E +D
Sbjct: 130 AMIGASAA-------------LSLSGIPFSGPIGVARVGYLNDQYVLNPTTDELKESRLD 176
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
T G ++ V+ AE S+D + ++ +I+ +++
Sbjct: 177 LVVAGTQ-GAVLMVESEAEL--LSEDQMLGAVVFGHEQQQIVIENINSLVAE 225
>gi|193067267|ref|ZP_03048235.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
E110019]
gi|192959224|gb|EDV89659.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
E110019]
Length = 711
Score = 146 bits (367), Expect = 3e-33, Method: Composition-based stats.
Identities = 45/242 (18%), Positives = 92/242 (38%), Gaps = 18/242 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR+++ +R + + V GS L G+T L TATL + +V + +
Sbjct: 315 RIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVLDELMGERTD 374
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + R+ G + R + +V+ + + +
Sbjct: 375 TFLFHYNFPPYSVGETGMVGSPKRREIGHGRL----AKRGVLAVMPDMDKFPYTVRVVSE 430
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ GA +AL D ++ + V +G + +
Sbjct: 431 ITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLSD---------I 481
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D + G I +Q + +++ LN AK ++ + +
Sbjct: 482 LGDEDHLGDMDFKVAGSRDG-ISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQA 540
Query: 238 IS 239
I+
Sbjct: 541 IN 542
Score = 94.5 bits (233), Expect = 1e-17, Method: Composition-based stats.
Identities = 37/232 (15%), Positives = 76/232 (32%), Gaps = 27/232 (11%)
Query: 14 ISLTRRV-SKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----HGWITAEYGMLPR 68
++L + ++ A + +V DT + T ++K + T G +P
Sbjct: 16 VTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVNYQERTYAAGRIPG 75
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
S R GR I R+I R +R + + Q+I +
Sbjct: 76 SFFRR------EGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVNPDIV 129
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+ GA A G + A G + +++ E +D
Sbjct: 130 AMIGASAA-------------LSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLD 176
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
T++ ++ V+ AE S+D + ++ +I+ +++
Sbjct: 177 LVVAGTEA-AVLMVESEAEL--LSEDQMLGAVVFGHEQQQVVIQNINELVKK 225
>gi|293412539|ref|ZP_06655262.1| polyribonucleotide nucleotidyltransferase [Escherichia coli B354]
gi|291469310|gb|EFF11801.1| polyribonucleotide nucleotidyltransferase [Escherichia coli B354]
Length = 711
Score = 146 bits (367), Expect = 3e-33, Method: Composition-based stats.
Identities = 45/242 (18%), Positives = 92/242 (38%), Gaps = 18/242 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR+++ +R + + V GS L G+T L TATL + +V + +
Sbjct: 315 RIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVLDELMGERTD 374
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + R+ G + R + +V+ + + +
Sbjct: 375 TFLFHYNFPPYSVGETGMVGSPKRREIGHGRL----AKRGVLAVMPDMDKFPYTVRVVSE 430
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ GA +AL D ++ + V +G + +
Sbjct: 431 ITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLSD---------I 481
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D + G I +Q + +++ LN AK ++ + +
Sbjct: 482 LGDEDHLGDMDFKVAGSRDG-ISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQA 540
Query: 238 IS 239
I+
Sbjct: 541 IN 542
Score = 96.1 bits (237), Expect = 4e-18, Method: Composition-based stats.
Identities = 37/232 (15%), Positives = 76/232 (32%), Gaps = 27/232 (11%)
Query: 14 ISLTRRV-SKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----HGWITAEYGMLPR 68
++L + ++ A + +V DT + T ++K + T G +P
Sbjct: 16 VTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVNYQERTYAAGRIPG 75
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
S R GR I R+I R +R + + Q+I +
Sbjct: 76 SFFRR------EGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVNPDIV 129
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+ GA A G + A G + +++ E +D
Sbjct: 130 AMIGASAA-------------LSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLD 176
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
T++ ++ V+ AE S+D + ++ +I+ +++
Sbjct: 177 LVVAGTEA-AVLMVESEAEL--LSEDQMLGAVVFGHEQQQVVIQNINELVKE 225
>gi|229031437|ref|ZP_04187437.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus AH1271]
gi|228729726|gb|EEL80706.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus AH1271]
Length = 712
Score = 146 bits (367), Expect = 3e-33, Method: Composition-based stats.
Identities = 44/244 (18%), Positives = 85/244 (34%), Gaps = 18/244 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56
+R GR+ +++R ++ + GS L G T L+ T + ++ + +
Sbjct: 315 IRPDGRKGDEIRPLASEVGILSRTHGSGLFTRGQTQALSICTLGALGDVQILDGLGVEES 374
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y S G R+ G RAL V+ + +
Sbjct: 375 KRFMHHYNFPSFSVGETRPMRGPGRREIGHGALG----ERALEPVIPSEKDFPYTVRLVS 430
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V++++G T A+I G+ +A+ D ++ + V G + D
Sbjct: 431 EVLESNGSTSQASICGSTLAMMDAGVPLKAPVAGIAMGLVKTGE---------HYTILSD 481
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T G + +Q + S++ L AK ++
Sbjct: 482 IQGMEDHLGDMDFKVAGTAKG-VTALQMDIKIDGLSREILEEALQQAKVGRVHILNHMLS 540
Query: 237 VISN 240
VI+
Sbjct: 541 VIAE 544
Score = 111 bits (278), Expect = 6e-23, Method: Composition-based stats.
Identities = 43/231 (18%), Positives = 89/231 (38%), Gaps = 26/231 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATL---EEKVPMWIRNTKHGWITAEYGMLP 67
R++++ ++K A G+ LV++GDT +L+TAT + V + + G +P
Sbjct: 15 RQLTVETSQLAKQANGAVLVRYGDTAVLSTATASKEPKNVDFFPLTVNYEERLYAVGKIP 74
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R GR ++ R+I R +R + Q++ + D +
Sbjct: 75 GGFIKR------EGRPSEKAILASRLIDRPIRPLFADGFRNEVQVVSIVMSVDQDCSSEM 128
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
AA+ G+ +A +G +A + G + G +++ + D+
Sbjct: 129 AAMLGSSLA-------------LSISDIPFEGPIAGATVGRINGEFVINPTVEQQEQSDI 175
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
T I V+ A++ ++ + D I LI Q++++
Sbjct: 176 HLVVAGTKD-AINMVEAGADQVP--EETMLEAIMFGHDEIKRLIAFQEEIV 223
>gi|62181793|ref|YP_218210.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Choleraesuis str. SC-B67]
gi|161616288|ref|YP_001590253.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Paratyphi B str. SPB7]
gi|224585080|ref|YP_002638879.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Paratyphi C strain RKS4594]
gi|238910077|ref|ZP_04653914.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Tennessee str. CDC07-0191]
gi|15029403|gb|AAK81870.1|AF399929_1 polynucleotide phosphorylase [Salmonella enterica subsp. enterica
serovar Typhimurium]
gi|62129426|gb|AAX67129.1| polynucleotide phosphorylase, member of mRNA degradosome
[Salmonella enterica subsp. enterica serovar
Choleraesuis str. SC-B67]
gi|161365652|gb|ABX69420.1| hypothetical protein SPAB_04093 [Salmonella enterica subsp.
enterica serovar Paratyphi B str. SPB7]
gi|224469608|gb|ACN47438.1| polynucleotide phosphorylase [Salmonella enterica subsp. enterica
serovar Paratyphi C strain RKS4594]
gi|312914308|dbj|BAJ38282.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Typhimurium str. T000240]
gi|320087729|emb|CBY97493.1| polyribonucleotide nucleotidyltransferase [Salmonella enterica
subsp. enterica serovar Weltevreden str. 2007-60-3289-1]
gi|321225966|gb|EFX51020.1| Polyribonucleotide nucleotidyltransferase [Salmonella enterica
subsp. enterica serovar Typhimurium str. TN061786]
gi|322615287|gb|EFY12208.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Montevideo str. 315996572]
gi|322618354|gb|EFY15245.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Montevideo str. 495297-1]
gi|322622841|gb|EFY19685.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Montevideo str. 495297-3]
gi|322626837|gb|EFY23634.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Montevideo str. 495297-4]
gi|322631406|gb|EFY28166.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Montevideo str. 515920-1]
gi|322635327|gb|EFY32041.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Montevideo str. 515920-2]
gi|322643462|gb|EFY40025.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Montevideo str. 531954]
gi|322647102|gb|EFY43603.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Montevideo str.
NC_MB110209-0054]
gi|322648905|gb|EFY45350.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Montevideo str. OH_2009072675]
gi|322655097|gb|EFY51408.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Montevideo str.
CASC_09SCPH15965]
gi|322657700|gb|EFY53968.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Montevideo str. 19N]
gi|322664196|gb|EFY60394.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Montevideo str. 81038-01]
gi|322667479|gb|EFY63641.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Montevideo str. MD_MDA09249507]
gi|322674727|gb|EFY70819.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Montevideo str. 414877]
gi|322675640|gb|EFY71713.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Montevideo str. 366867]
gi|322682276|gb|EFY78299.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Montevideo str. 413180]
gi|322684879|gb|EFY80877.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Montevideo str. 446600]
gi|322716280|gb|EFZ07851.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Choleraesuis str. A50]
gi|323131642|gb|ADX19072.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Typhimurium str. 4/74]
gi|323199033|gb|EFZ84130.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Montevideo str. 556150-1]
gi|323204267|gb|EFZ89276.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Montevideo str. 609460]
gi|323207614|gb|EFZ92561.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Montevideo str. 507440-20]
gi|323211333|gb|EFZ96177.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Montevideo str. 556152]
gi|323214725|gb|EFZ99474.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Montevideo str. MB101509-0077]
gi|323221205|gb|EGA05631.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Montevideo str. MB102109-0047]
gi|323224054|gb|EGA08347.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Montevideo str. MB110209-0055]
gi|323230297|gb|EGA14416.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Montevideo str. MB111609-0052]
gi|323233273|gb|EGA17367.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Montevideo str. 2009083312]
gi|323239310|gb|EGA23360.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Montevideo str. 2009085258]
gi|323242439|gb|EGA26465.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Montevideo str. 315731156]
gi|323246949|gb|EGA30915.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Montevideo str. IA_2009159199]
gi|323254118|gb|EGA37938.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Montevideo str. IA_2010008282]
gi|323255235|gb|EGA39012.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Montevideo str. IA_2010008283]
gi|323262698|gb|EGA46254.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Montevideo str. IA_2010008284]
gi|323264008|gb|EGA47516.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Montevideo str. IA_2010008285]
gi|323269394|gb|EGA52849.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Montevideo str. IA_2010008287]
gi|326625033|gb|EGE31378.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Dublin str. 3246]
gi|326629307|gb|EGE35650.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Gallinarum str. 9]
Length = 721
Score = 146 bits (367), Expect = 3e-33, Method: Composition-based stats.
Identities = 45/242 (18%), Positives = 92/242 (38%), Gaps = 18/242 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR+++ +R + + V GS L G+T L TATL + +V + +
Sbjct: 325 RIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVLDELMGERTD 384
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + R+ G + R + +V+ + + +
Sbjct: 385 SFLFHYNFPPYSVGETGMVGSPKRREIGHGRL----AKRGVLAVMPDMDKFPYTVRVVSE 440
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ GA +AL D ++ + V +G + +
Sbjct: 441 ITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLSD---------I 491
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D + G I +Q + +++ LN AK ++ + +
Sbjct: 492 LGDEDHLGDMDFKVAGSRDG-ISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQA 550
Query: 238 IS 239
I+
Sbjct: 551 IN 552
Score = 94.9 bits (234), Expect = 9e-18, Method: Composition-based stats.
Identities = 38/232 (16%), Positives = 76/232 (32%), Gaps = 27/232 (11%)
Query: 14 ISLTRRV-SKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----HGWITAEYGMLPR 68
++L + ++ A + +V DT + T ++K + T G +P
Sbjct: 26 VTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVNYQERTYAAGRIPG 85
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
S R GR I R+I R +R + + Q+I +
Sbjct: 86 SFFRR------EGRPSEGETLIARLIDRPVRPLFPEGFVNEVQVIATVVSVNPQVNPDIV 139
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+ GA A G + A G + +++ E +D
Sbjct: 140 AMIGASAA-------------LSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLD 186
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
T++ ++ V+ AE S+D + ++ +I+ D++
Sbjct: 187 LVVAGTEA-AVLMVESEAEL--LSEDTMLGAVVFGHEQQQVVIQAINDLVKE 235
>gi|330830884|ref|YP_004393836.1| polyribonucleotide nucleotidyltransferase [Aeromonas veronii B565]
gi|328806020|gb|AEB51219.1| Polyribonucleotide nucleotidyltransferase [Aeromonas veronii B565]
Length = 715
Score = 146 bits (367), Expect = 3e-33, Method: Composition-based stats.
Identities = 40/237 (16%), Positives = 87/237 (36%), Gaps = 10/237 (4%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R+ GR +R +S+ + A GS L G+T + ATL + + G
Sbjct: 314 RIDGRDPEMIRALSVGTGILPRAHGSALFTRGETQAIVVATLGTERDAQNIDELTGNRAD 373
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
+ + V + G R R+ R + +V+ +A + + ++ ++
Sbjct: 374 RFMLHYNFPPYCVGETGMMGSPKRREIGHGRLAKRGVAAVMPSAAEFPYVVRVVSEITES 433
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
+G + A++ G+ +AL D ++ + V + + + E
Sbjct: 434 NGSSSMASVCGSSLALMDAGVPIKASVAGIAMGLVKEEEGFVVLSD---------ILGDE 484
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
D D+D T G + +Q + +++ L A+ ++K+ + I
Sbjct: 485 DHLGDMDFKVAGTTEG-VTALQMDIKIEGITKEIMEIALKQARGARLHILKVMDEAI 540
Score = 94.5 bits (233), Expect = 1e-17, Method: Composition-based stats.
Identities = 37/228 (16%), Positives = 74/228 (32%), Gaps = 27/228 (11%)
Query: 14 ISLTRRV-SKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGMLPR 68
++L V ++ A + +V DT + T + + + T G +P
Sbjct: 15 VTLETGVMARQATAAVMVSMDDTCVFVTVVGKKEADHGRDFFPLTVNYQERTYAAGRIPG 74
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
R GR I R+I R +R + L Q++ +
Sbjct: 75 GFFRR------EGRPSEGETLISRLIDRPIRPLFPEGFLNEVQVVATVMSVNPAVSPDIV 128
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+ GA A G + A G + G +++ E D+D
Sbjct: 129 AMIGASAA-------------LAISGIPFGGPIGAARVGYMNGQYVLNPTTTELPQSDLD 175
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
T + ++ V+ +E A S++ + +++ +I +
Sbjct: 176 LVVAGTAN-AVLMVE--SEAAILSEEVMLGAVVYGHEQMQTVINAINE 220
>gi|329960360|ref|ZP_08298785.1| polyribonucleotide nucleotidyltransferase [Bacteroides fluxus YIT
12057]
gi|328532798|gb|EGF59580.1| polyribonucleotide nucleotidyltransferase [Bacteroides fluxus YIT
12057]
Length = 714
Score = 146 bits (367), Expect = 3e-33, Method: Composition-based stats.
Identities = 47/243 (19%), Positives = 86/243 (35%), Gaps = 18/243 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHG 57
RL GR+ ++R I GS + G+T L+T T L+EK+ +
Sbjct: 319 RLDGRKTTEIRPIWCETSYLPGPHGSAIFTRGETQSLSTVTLGTKLDEKIIDDVLEHGKE 378
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P STG + V R+ G RAL+ + + + D
Sbjct: 379 RFLLHYNFPPFSTGEAKAQRGVGRREIGHGHL----AWRALKGQIPADY--PYVVRVVSD 432
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+++++G + A + +AL D ++ + + + G + D+
Sbjct: 433 ILESNGSSSMATVCAGTLALMDAGVKIKKPVSGIAMGLIKN-------AGEDKYAVLSDI 485
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T G I Q + S + L AK+ ++ +
Sbjct: 486 LGDEDHLGDMDFKVTGTKDG-ITATQMDIKVDGLSYEILEKALLQAKEGREYILGKITEC 544
Query: 238 ISN 240
++
Sbjct: 545 LAE 547
Score = 105 bits (262), Expect = 4e-21, Method: Composition-based stats.
Identities = 41/245 (16%), Positives = 80/245 (32%), Gaps = 34/245 (13%)
Query: 3 LSGRQENQMREISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----HG 57
GR I+L ++K A+GS +++ G+T LL T + +
Sbjct: 12 PDGRT------ITLETGKLAKQADGSVMLRMGNTMLLATVCAAKDAVPGTDFMPLQVEYK 65
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
+ +G P R GR R++ RALR + +
Sbjct: 66 EKFSAFGRFPGGFTKR------EGRASDYEILTCRLVDRALRPLFPDNFHAEVY------ 113
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ V + D L + + G ++ + + G +++
Sbjct: 114 -------VNIILFSADGVDMPDALAGLAASAALAVSDIPFNGPISEVRVARIDGQFVINP 166
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
+ + D+D T +I+ V+ E S+ + A + I K Q +
Sbjct: 167 TFEQLEKADMDLMVGATYE-NIMMVE--GEMDEVSERDLLEAMKAAHEAIKIQCKAQME- 222
Query: 238 ISNEV 242
++ EV
Sbjct: 223 LAEEV 227
>gi|301055297|ref|YP_003793508.1| polyribonucleotide nucleotidyltransferase [Bacillus anthracis CI]
gi|300377466|gb|ADK06370.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus biovar
anthracis str. CI]
Length = 712
Score = 146 bits (367), Expect = 3e-33, Method: Composition-based stats.
Identities = 44/244 (18%), Positives = 85/244 (34%), Gaps = 18/244 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56
+R GR+ +++R ++ + GS L G T L+ T + ++ + +
Sbjct: 315 IRPDGRKGDEIRPLASEVGILSRTHGSGLFTRGQTQALSICTLGALGDVQILDGLGVEES 374
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y S G R+ G RAL V+ + +
Sbjct: 375 KRFMHHYNFPSFSVGETRPMRGPGRREIGHGALG----ERALEPVIPSEKDFPYTVRLVS 430
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V++++G T A+I G+ +A+ D ++ + V G + D
Sbjct: 431 EVLESNGSTSQASICGSTLAMMDAGVPLKAPVAGIAMGLVKTGE---------HYTILSD 481
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T G + +Q + S++ L AK ++
Sbjct: 482 IQGMEDHLGDMDFKVAGTAHG-VTALQMDIKIDGLSREILEEALQQAKVGRVHILNHMLS 540
Query: 237 VISN 240
VI+
Sbjct: 541 VIAE 544
Score = 114 bits (284), Expect = 1e-23, Method: Composition-based stats.
Identities = 43/231 (18%), Positives = 89/231 (38%), Gaps = 26/231 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEK---VPMWIRNTKHGWITAEYGMLP 67
R++++ ++K A G+ LV++GDT +L+TAT + V + + G +P
Sbjct: 15 RQLTVETGQLAKQANGAVLVRYGDTAVLSTATASREAKNVDFFPLTVNYEERLYAVGKIP 74
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R GR ++ R+I R +R + Q++ + D +
Sbjct: 75 GGFIKR------EGRPSEKAILASRLIDRPIRPLFADGFRNEVQVVSIVMSVDQDCSSEM 128
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
AA+ G+ +A +G +A + G + G +++ + D+
Sbjct: 129 AAMLGSSLA-------------LSISDIPFEGPIAGATVGRINGEFVINPTVEQQEQSDI 175
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
T I V+ A++ ++ + D I LI Q++++
Sbjct: 176 HLVVAGTKD-AINMVEAGADQVP--EETMLEAIMFGHDEIKRLIAFQEEIV 223
>gi|271499178|ref|YP_003332203.1| polyribonucleotide nucleotidyltransferase [Dickeya dadantii Ech586]
gi|270342733|gb|ACZ75498.1| polyribonucleotide nucleotidyltransferase [Dickeya dadantii Ech586]
Length = 706
Score = 146 bits (367), Expect = 3e-33, Method: Composition-based stats.
Identities = 44/242 (18%), Positives = 91/242 (37%), Gaps = 18/242 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR+++ +R + + V GS L G+T L TATL + + + +
Sbjct: 315 RIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTERDAQTIDELTGERTD 374
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + R+ G + R + +V+ + + +
Sbjct: 375 RFLLHYNFPPYSVGETGMVGSPKRREIGHGRL----AKRGVLAVMPKPEAFPYTVRVVSE 430
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ GA +AL D ++ + V +G + +
Sbjct: 431 ITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGENYVVLSD---------I 481
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D + G + +Q + +++ LN AK ++ + +
Sbjct: 482 LGDEDHLGDMDFKVAGSREG-VTALQMDIKIEGITREIMQVALNQAKGARLHILGVMEQA 540
Query: 238 IS 239
IS
Sbjct: 541 IS 542
Score = 90.7 bits (223), Expect = 2e-16, Method: Composition-based stats.
Identities = 38/232 (16%), Positives = 74/232 (31%), Gaps = 27/232 (11%)
Query: 14 ISLTRRV-SKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----HGWITAEYGMLPR 68
++L + ++ A + +V DT + T + + T G +P
Sbjct: 16 VTLETGMMARQATAAVMVSMDDTAVFVTVVGAKHAKPGQDFFPLTVNYQERTYAAGRIPG 75
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
R GR I R+I R +R + + Q+I +
Sbjct: 76 GFFRR------EGRPSEGETLISRLIDRPIRPLFPDGFVNEVQVIATVVSVNPQVNPDIV 129
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+ GA A G + A G + +++ E T +D
Sbjct: 130 AMIGASAA-------------LSLSGIPFNGPIGAARVGYINDQYVLNPTTEELKTSRLD 176
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
T+ G ++ V+ +E S+D + D+ +I+ K + +
Sbjct: 177 LVVAGTE-GAVLMVE--SEADLLSEDQMLGAVVFGHDQQQIVIENIKSLTAE 225
>gi|317477841|ref|ZP_07937027.1| polyribonucleotide nucleotidyltransferase [Bacteroides sp. 4_1_36]
gi|316905977|gb|EFV27745.1| polyribonucleotide nucleotidyltransferase [Bacteroides sp. 4_1_36]
Length = 714
Score = 146 bits (367), Expect = 3e-33, Method: Composition-based stats.
Identities = 48/243 (19%), Positives = 87/243 (35%), Gaps = 18/243 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHG 57
RL GR+ ++R I GS + G+T L+T T L+EK+ +
Sbjct: 319 RLDGRKTTEIRPIWCETSYLPGPHGSAIFTRGETQSLSTVTLGTKLDEKIIDDVLEHGKE 378
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P STG + V R+ G RAL+ + + + + D
Sbjct: 379 RFLLHYNFPPFSTGEAKAQRGVGRREIGHGHL----AWRALKGQIPANY--PYVVRVVSD 432
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+++++G + A + +AL D ++ + + + G + D+
Sbjct: 433 ILESNGSSSMATVCAGTLALMDAGVKIKKPVSGIAMGLIKN-------AGEDKYAVLSDI 485
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T G I Q + S + L AK+ ++ +
Sbjct: 486 LGDEDHLGDMDFKVTGTKDG-ITATQMDIKVDGLSYEILEKALLQAKEGREYILGKITEC 544
Query: 238 ISN 240
I+
Sbjct: 545 IAE 547
Score = 108 bits (270), Expect = 6e-22, Method: Composition-based stats.
Identities = 41/245 (16%), Positives = 80/245 (32%), Gaps = 34/245 (13%)
Query: 3 LSGRQENQMREISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----HG 57
GR I+L ++K A+GS +++ G+T LL T + +
Sbjct: 12 PDGRT------ITLETGKLAKQADGSVMLRMGNTMLLATVCAAKDAVPGTDFMPLQVEYK 65
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
+ +G P R GR R++ RALR + +
Sbjct: 66 EKFSAFGRFPGGFTKR------EGRASDYEILTCRLVDRALRPLFPDNFHAEVY------ 113
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ V + D L + + G ++ + + G +++
Sbjct: 114 -------VNIILFSADGVDMPDALAGLAASAALAVSDIPFNGPISEVRVARINGQFVINP 166
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
+ + D+D T +I+ V+ E S+ + A + I K Q +
Sbjct: 167 TFEQLEQADMDLMVGATYE-NIMMVE--GEMDEVSEQDLLEAMKAAHEAIKIQCKAQME- 222
Query: 238 ISNEV 242
++ EV
Sbjct: 223 LAEEV 227
>gi|312968497|ref|ZP_07782706.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
2362-75]
gi|312286715|gb|EFR14626.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
2362-75]
Length = 711
Score = 146 bits (367), Expect = 3e-33, Method: Composition-based stats.
Identities = 45/242 (18%), Positives = 92/242 (38%), Gaps = 18/242 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR+++ +R + + V GS L G+T L TATL + +V + +
Sbjct: 315 RIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVLDELMGERTD 374
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + R+ G + R + +V+ + + +
Sbjct: 375 TFLFHYNFPPYSVGETGMVGSPKRREIGHGRL----AKRGVLAVMPDMDKFPYTVRVVSE 430
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ GA +AL D ++ + V +G + +
Sbjct: 431 ITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLSD---------I 481
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D + G I +Q + +++ LN AK ++ + +
Sbjct: 482 LGDEDHLGDMDFKVAGSRDG-ISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQA 540
Query: 238 IS 239
I+
Sbjct: 541 IN 542
Score = 96.1 bits (237), Expect = 4e-18, Method: Composition-based stats.
Identities = 37/232 (15%), Positives = 76/232 (32%), Gaps = 27/232 (11%)
Query: 14 ISLTRRV-SKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----HGWITAEYGMLPR 68
++L + ++ A + +V DT + T ++K + T G +P
Sbjct: 16 VTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVNYQERTYAAGRIPG 75
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
S R GR I R+I R +R + + Q+I +
Sbjct: 76 SFFRR------EGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVNPDIV 129
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+ GA A G + A G + +++ E +D
Sbjct: 130 AMIGASAA-------------LSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLD 176
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
T++ ++ V+ AE S+D + ++ +I+ +++
Sbjct: 177 LVVAGTEA-AVLMVESEAEL--LSEDQMLGAVVFGHEQQQVVIQNINELVKE 225
>gi|308050580|ref|YP_003914146.1| polyribonucleotide nucleotidyltransferase [Ferrimonas balearica DSM
9799]
gi|307632770|gb|ADN77072.1| polyribonucleotide nucleotidyltransferase [Ferrimonas balearica DSM
9799]
Length = 698
Score = 146 bits (367), Expect = 3e-33, Method: Composition-based stats.
Identities = 40/241 (16%), Positives = 87/241 (36%), Gaps = 18/241 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +R +S+ V GS L G+T L ATL + ++ + +
Sbjct: 314 RIDGRDTKMIRALSVLPGVLPRTHGSALFTRGETQALVAATLGTERDGQIIDELIGERTD 373
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P G + R+ G + R +++V+ + + + +
Sbjct: 374 RFMLHYNFPPFCVGETGFIGSPKRREIGHGKL----AKRGVQAVMPTAEEFPYTVRVVSE 429
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ G +AL D ++ + V +G + +
Sbjct: 430 ITESNGSSSMASVCGTSLALMDAGVPIKASVAGIAMGLVKEGDNFVVLSD---------I 480
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T G + +Q + +Q+ L A + ++ + +
Sbjct: 481 LGDEDHLGDMDFKVAGTRDG-VTALQMDIKIEGITQEIMQIALKQAFEARVHILGVMDEA 539
Query: 238 I 238
+
Sbjct: 540 L 540
Score = 106 bits (264), Expect = 2e-21, Method: Composition-based stats.
Identities = 38/228 (16%), Positives = 72/228 (31%), Gaps = 27/228 (11%)
Query: 14 ISLTRRV-SKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----HGWITAEYGMLPR 68
++L V ++ A+ + L GDT +L T ++ V + T G +P
Sbjct: 15 VTLETGVIARQADAAVLASMGDTTVLVTVVGKKNVQPGQDFFPLTVNYQEKTYAAGKIPG 74
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
R GR R+I R +R + + Q+I ++
Sbjct: 75 GFFKR------EGRPSEGETLTARLIDRPIRPLFPKGFMNEVQVIATVVSVEPAVSPDVV 128
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+ G A G + G G +++ E T +D
Sbjct: 129 AMIGTSAA-------------LALSGIPFNGPIGCARVGFRDGEYLLNPSVEELKTSKLD 175
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
T+S ++ V+ AE S++ + +I+ +
Sbjct: 176 LVVAGTES-AVLMVESEAE--VLSEEIMLGAVMFGHQAQQTVIQAINE 220
>gi|295395380|ref|ZP_06805579.1| polyribonucleotide nucleotidyltransferase [Brevibacterium
mcbrellneri ATCC 49030]
gi|294971702|gb|EFG47578.1| polyribonucleotide nucleotidyltransferase [Brevibacterium
mcbrellneri ATCC 49030]
Length = 749
Score = 146 bits (367), Expect = 3e-33, Method: Composition-based stats.
Identities = 44/245 (17%), Positives = 83/245 (33%), Gaps = 12/245 (4%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKH 56
+R+ GR +R +S + GS L + G+T ++ TL+ E+ +
Sbjct: 342 VRIDGRGIKDIRPLSAETNILPRVHGSALFERGETQIMGVTTLDMLKMEQQIDSLTPVTS 401
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P STG + + R+ G RAL V+ I
Sbjct: 402 KRYIHHYNFPPYSTGETGRVGSPKRREIGHGAL----AERALVPVIPSREDFPYAIRQVS 457
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIV- 175
+ + ++G T ++ + ++L + + V V G Y +
Sbjct: 458 EALGSNGSTSMGSVCASTMSLLSAGVPLRAPVAGIAMGLV--SDVIETDQGKQTAYAALT 515
Query: 176 DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
D+ ED+ D+D T I +Q + A L A++ ++ +
Sbjct: 516 DILGAEDAFGDMDFKVAGTKDF-ITAIQLDTKLDGIPASVLAAALKQAREARLTILDVLT 574
Query: 236 DVISN 240
I+
Sbjct: 575 AAIAE 579
Score = 73.3 bits (178), Expect = 3e-11, Method: Composition-based stats.
Identities = 39/249 (15%), Positives = 77/249 (30%), Gaps = 41/249 (16%)
Query: 15 SLTRR---VSKYAEGSCLVKF-GDTHLLTTATLE----EKVPMWIRNTKHGWITAEYGML 66
+ +++ A G G+T LL+ + E + G +
Sbjct: 26 EIEFGTGRLAQQAAGCATATLDGETTLLSATAVSKNPREGFDFFPLTVDVEERMYAAGKI 85
Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
P S R GR + R+I R LR QI++ + D
Sbjct: 86 PGSFFRR------EGRPTTDAILACRLIDRPLRPSFVKGLRNEVQIVVTVLSMHPDHLYD 139
Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
T AI A ++ G + + ++ + +Y +
Sbjct: 140 TLAINAASMSTQLGG-------------LPFSGPIGGVRIALIDDQWVAFPNYSQLENAV 186
Query: 187 VDANFVM---TDSGHIVEVQGSAERATF----------SQDHFFAMLNLAKDRIADLIKL 233
D D I+ V+ A ++ +++ L AK I +L++
Sbjct: 187 FDMAVAGRVVGDDVAIMMVEAEASENSWDLIQGGARKPTEEVVAEGLEAAKPFIRELVRA 246
Query: 234 QKDVISNEV 242
Q++ +++ V
Sbjct: 247 QQE-LADRV 254
>gi|270294853|ref|ZP_06201054.1| polyribonucleotide nucleotidyltransferase [Bacteroides sp. D20]
gi|270274100|gb|EFA19961.1| polyribonucleotide nucleotidyltransferase [Bacteroides sp. D20]
Length = 714
Score = 146 bits (367), Expect = 3e-33, Method: Composition-based stats.
Identities = 48/243 (19%), Positives = 88/243 (36%), Gaps = 18/243 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHG 57
RL GR+ ++R I GS + G+T L+T T L+EK+ +
Sbjct: 319 RLDGRKTTEIRPIWCETSYLPGPHGSAIFTRGETQSLSTVTLGTKLDEKIIDDVLEHGKE 378
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P STG + V R+ G RAL+ + ++ + + D
Sbjct: 379 RFLLHYNFPPFSTGEAKAQRGVGRREIGHGHL----AWRALKGQIPVNY--PYVVRVVSD 432
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+++++G + A + +AL D ++ + + + G + D+
Sbjct: 433 ILESNGSSSMATVCAGTLALMDAGVKIKKPVSGIAMGLIKN-------AGEDKYAVLSDI 485
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T G I Q + S + L AK+ ++ +
Sbjct: 486 LGDEDHLGDMDFKVTGTKDG-ITATQMDIKVDGLSYEILEKALLQAKEGREYILGKITEC 544
Query: 238 ISN 240
I+
Sbjct: 545 IAE 547
Score = 108 bits (270), Expect = 6e-22, Method: Composition-based stats.
Identities = 41/245 (16%), Positives = 80/245 (32%), Gaps = 34/245 (13%)
Query: 3 LSGRQENQMREISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----HG 57
GR I+L ++K A+GS +++ G+T LL T + +
Sbjct: 12 PDGRT------ITLETGKLAKQADGSVMLRMGNTMLLATVCAAKDAVPGTDFMPLQVEYK 65
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
+ +G P R GR R++ RALR + +
Sbjct: 66 EKFSAFGRFPGGFTKR------EGRASDYEILTCRLVDRALRPLFPDNFHAEVY------ 113
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ V + D L + + G ++ + + G +++
Sbjct: 114 -------VNIILFSADGVDMPDALAGLAASAALAVSDIPFNGPISEVRVARINGQFVINP 166
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
+ + D+D T +I+ V+ E S+ + A + I K Q +
Sbjct: 167 TFEQLEQADMDLMVGATYE-NIMMVE--GEMDEVSEQDLLEAMKAAHEAIKIQCKAQME- 222
Query: 238 ISNEV 242
++ EV
Sbjct: 223 LAEEV 227
>gi|257096728|sp|B7M072|PNP_ECO8A RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
Length = 711
Score = 146 bits (367), Expect = 3e-33, Method: Composition-based stats.
Identities = 45/242 (18%), Positives = 92/242 (38%), Gaps = 18/242 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR+++ +R + + V GS L G+T L TATL + +V + +
Sbjct: 315 RIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVLDELMGERTD 374
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + R+ G + R + +V+ + + +
Sbjct: 375 TFLFHYNFPPYSVGETGMVGSPKRREIGHGRL----AKRGVLAVMPDMDKFPYTVRVVSE 430
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ GA +AL D ++ + V +G + +
Sbjct: 431 ITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLSD---------I 481
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D + G I +Q + +++ LN AK ++ + +
Sbjct: 482 LGDEDHLGDMDFKVAGSRDG-ISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQA 540
Query: 238 IS 239
I+
Sbjct: 541 IN 542
Score = 96.1 bits (237), Expect = 4e-18, Method: Composition-based stats.
Identities = 37/232 (15%), Positives = 76/232 (32%), Gaps = 27/232 (11%)
Query: 14 ISLTRRV-SKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----HGWITAEYGMLPR 68
++L + ++ A + +V DT + T ++K + T G +P
Sbjct: 16 VTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVNYQERTYAAGRIPG 75
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
S R GR I R+I R +R + + Q+I +
Sbjct: 76 SFFRR------EGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVNPDIV 129
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+ GA A G + A G + +++ E +D
Sbjct: 130 AMIGASAA-------------LSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLD 176
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
T++ ++ V+ AE S+D + ++ +I+ +++
Sbjct: 177 LVVAGTEA-AVLMVESEAEL--LSEDQMLGAVVFGHEQQQVVIQNINELVKE 225
>gi|170765724|ref|ZP_02900535.1| polyribonucleotide nucleotidyltransferase [Escherichia albertii
TW07627]
gi|170124870|gb|EDS93801.1| polyribonucleotide nucleotidyltransferase [Escherichia albertii
TW07627]
Length = 711
Score = 146 bits (367), Expect = 3e-33, Method: Composition-based stats.
Identities = 45/242 (18%), Positives = 92/242 (38%), Gaps = 18/242 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR+++ +R + + V GS L G+T L TATL + +V + +
Sbjct: 315 RIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVLDELMGERTD 374
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + R+ G + R + +V+ + + +
Sbjct: 375 TFLFHYNFPPYSVGETGMVGSPKRREIGHGRL----AKRGVLAVMPDMDKFPYTVRVVSE 430
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ GA +AL D ++ + V +G + +
Sbjct: 431 ITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLSD---------I 481
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D + G I +Q + +++ LN AK ++ + +
Sbjct: 482 LGDEDHLGDMDFKVAGSRDG-ISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQA 540
Query: 238 IS 239
I+
Sbjct: 541 IN 542
Score = 96.1 bits (237), Expect = 4e-18, Method: Composition-based stats.
Identities = 37/232 (15%), Positives = 76/232 (32%), Gaps = 27/232 (11%)
Query: 14 ISLTRRV-SKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----HGWITAEYGMLPR 68
++L + ++ A + +V DT + T ++K + T G +P
Sbjct: 16 VTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVNYQERTYAAGRIPG 75
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
S R GR I R+I R +R + + Q+I +
Sbjct: 76 SFFRR------EGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVNPDIV 129
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+ GA A G + A G + +++ E +D
Sbjct: 130 AMIGASAA-------------LSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLD 176
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
T++ ++ V+ AE S+D + ++ +I+ +++
Sbjct: 177 LVVAGTEA-AVLMVESEAEL--LSEDQMLGAVVFGHEQQQVVIQNINELVKE 225
>gi|170682265|ref|YP_001745438.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli
SMS-3-5]
gi|191172253|ref|ZP_03033796.1| polyribonucleotide nucleotidyltransferase [Escherichia coli F11]
gi|237706083|ref|ZP_04536564.1| polynucleotide phosphorylase/polyadenylase [Escherichia sp.
3_2_53FAA]
gi|293406776|ref|ZP_06650702.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli
FVEC1412]
gi|298382516|ref|ZP_06992113.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
FVEC1302]
gi|306816492|ref|ZP_07450624.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli NC101]
gi|331659453|ref|ZP_08360395.1| polyribonucleotide nucleotidyltransferase [Escherichia coli TA206]
gi|331684813|ref|ZP_08385405.1| polyribonucleotide nucleotidyltransferase [Escherichia coli H299]
gi|187610330|sp|A1AG69|PNP_ECOK1 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|187610331|sp|Q0TCU5|PNP_ECOL5 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|187610332|sp|Q8FD87|PNP_ECOL6 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|187610333|sp|Q1R6H4|PNP_ECOUT RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|226702650|sp|B1LFR6|PNP_ECOSM RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|257096724|sp|B7MB85|PNP_ECO45 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|257096727|sp|B7N0U9|PNP_ECO81 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|257096730|sp|B7NDF0|PNP_ECOLU RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|170519983|gb|ACB18161.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
SMS-3-5]
gi|190907563|gb|EDV67159.1| polyribonucleotide nucleotidyltransferase [Escherichia coli F11]
gi|222034883|emb|CAP77626.1| Polyribonucleotide nucleotidyltransferase [Escherichia coli LF82]
gi|226899123|gb|EEH85382.1| polynucleotide phosphorylase/polyadenylase [Escherichia sp.
3_2_53FAA]
gi|291426782|gb|EFE99814.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli
FVEC1412]
gi|294490926|gb|ADE89682.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
IHE3034]
gi|298277656|gb|EFI19172.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
FVEC1302]
gi|305850057|gb|EFM50516.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli NC101]
gi|307625235|gb|ADN69539.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli UM146]
gi|320194650|gb|EFW69280.1| Polyribonucleotide nucleotidyltransferase [Escherichia coli
WV_060327]
gi|323189213|gb|EFZ74497.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
RN587/1]
gi|323951316|gb|EGB47191.1| polyribonucleotide nucleotidyltransferase [Escherichia coli H252]
gi|323957687|gb|EGB53401.1| polyribonucleotide nucleotidyltransferase [Escherichia coli H263]
gi|323966346|gb|EGB61780.1| polyribonucleotide nucleotidyltransferase [Escherichia coli M863]
gi|323979117|gb|EGB74195.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
TW10509]
gi|327251945|gb|EGE63631.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
STEC_7v]
gi|331054035|gb|EGI26064.1| polyribonucleotide nucleotidyltransferase [Escherichia coli TA206]
gi|331078428|gb|EGI49634.1| polyribonucleotide nucleotidyltransferase [Escherichia coli H299]
Length = 711
Score = 146 bits (367), Expect = 3e-33, Method: Composition-based stats.
Identities = 45/242 (18%), Positives = 92/242 (38%), Gaps = 18/242 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR+++ +R + + V GS L G+T L TATL + +V + +
Sbjct: 315 RIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVLDELMGERTD 374
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + R+ G + R + +V+ + + +
Sbjct: 375 TFLFHYNFPPYSVGETGMVGSPKRREIGHGRL----AKRGVLAVMPDMDKFPYTVRVVSE 430
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ GA +AL D ++ + V +G + +
Sbjct: 431 ITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLSD---------I 481
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D + G I +Q + +++ LN AK ++ + +
Sbjct: 482 LGDEDHLGDMDFKVAGSRDG-ISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQA 540
Query: 238 IS 239
I+
Sbjct: 541 IN 542
Score = 96.1 bits (237), Expect = 4e-18, Method: Composition-based stats.
Identities = 37/232 (15%), Positives = 76/232 (32%), Gaps = 27/232 (11%)
Query: 14 ISLTRRV-SKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----HGWITAEYGMLPR 68
++L + ++ A + +V DT + T ++K + T G +P
Sbjct: 16 VTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVNYQERTYAAGRIPG 75
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
S R GR I R+I R +R + + Q+I +
Sbjct: 76 SFFRR------EGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVNPDIV 129
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+ GA A G + A G + +++ E +D
Sbjct: 130 AMIGASAA-------------LSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLD 176
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
T++ ++ V+ AE S+D + ++ +I+ +++
Sbjct: 177 LVVAGTEA-AVLMVESEAEL--LSEDQMLGAVVFGHEQQQVVIQNINELVKE 225
>gi|331648965|ref|ZP_08350053.1| polyribonucleotide nucleotidyltransferase [Escherichia coli M605]
gi|331042712|gb|EGI14854.1| polyribonucleotide nucleotidyltransferase [Escherichia coli M605]
Length = 734
Score = 146 bits (367), Expect = 3e-33, Method: Composition-based stats.
Identities = 45/242 (18%), Positives = 92/242 (38%), Gaps = 18/242 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR+++ +R + + V GS L G+T L TATL + +V + +
Sbjct: 338 RIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVLDELMGERTD 397
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + R+ G + R + +V+ + + +
Sbjct: 398 TFLFHYNFPPYSVGETGMVGSPKRREIGHGRL----AKRGVLAVMPDMDKFPYTVRVVSE 453
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ GA +AL D ++ + V +G + +
Sbjct: 454 ITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLSD---------I 504
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D + G I +Q + +++ LN AK ++ + +
Sbjct: 505 LGDEDHLGDMDFKVAGSRDG-ISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQA 563
Query: 238 IS 239
I+
Sbjct: 564 IN 565
Score = 96.1 bits (237), Expect = 4e-18, Method: Composition-based stats.
Identities = 37/232 (15%), Positives = 76/232 (32%), Gaps = 27/232 (11%)
Query: 14 ISLTRRV-SKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----HGWITAEYGMLPR 68
++L + ++ A + +V DT + T ++K + T G +P
Sbjct: 39 VTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVNYQERTYAAGRIPG 98
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
S R GR I R+I R +R + + Q+I +
Sbjct: 99 SFFRR------EGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVNPDIV 152
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+ GA A G + A G + +++ E +D
Sbjct: 153 AMIGASAA-------------LSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLD 199
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
T++ ++ V+ AE S+D + ++ +I+ +++
Sbjct: 200 LVVAGTEA-AVLMVESEAEL--LSEDQMLGAVVFGHEQQQVVIQNINELVKE 248
>gi|319649514|ref|ZP_08003670.1| PnpA protein [Bacillus sp. 2_A_57_CT2]
gi|317398676|gb|EFV79358.1| PnpA protein [Bacillus sp. 2_A_57_CT2]
Length = 706
Score = 146 bits (367), Expect = 3e-33, Method: Composition-based stats.
Identities = 42/244 (17%), Positives = 80/244 (32%), Gaps = 18/244 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56
+R GR + +R +S + GS L G T L+ T + ++ + +
Sbjct: 315 VRPDGRGLDVIRPLSSEVGLLPRTHGSGLFTRGQTQALSICTLGALGDVQILDGLGIEEE 374
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y S G R+ G RAL ++ I +
Sbjct: 375 KRFMHHYNFPNFSVGETGPIRGPGRREIGHGALG----ERALEPIIPSEKDFPYTIRLVS 430
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V++++G T A+I + +A+ D ++ + + G +I
Sbjct: 431 EVLESNGSTSQASICASTLAMMDAGVPIKAPVAGIAMGLIKSGEHYSILTD--------- 481
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T G + +Q + S++ L AK ++
Sbjct: 482 IQGMEDHLGDMDFKVAGTSKG-VTALQMDIKIEGLSREILEEALQQAKKGRMQILDSMLS 540
Query: 237 VISN 240
I
Sbjct: 541 TIGQ 544
Score = 108 bits (268), Expect = 1e-21, Method: Composition-based stats.
Identities = 44/235 (18%), Positives = 91/235 (38%), Gaps = 27/235 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATL---EEKVPMWIRNTKHGWITAEYGMLP 67
R++++ ++K A G+ LV++GDT +L+TAT + + + + G +P
Sbjct: 15 RKLTVEIGQLAKQANGAVLVRYGDTVVLSTATASKEPKNLDFFPLTVNYEERLYAVGKIP 74
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R GR ++ R+I R +R + Q++ + + +
Sbjct: 75 GGFIKR------EGRPSEKAILASRLIDRPIRPLFADGFRNDVQVVSMVMSVDQNCSSEM 128
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
AA+ G+ +A G +A +S G + G I++ + D+
Sbjct: 129 AAMFGSSLA-------------LSVSDIPFGGPIAGVSVGRIDGEFIINPSVDQAEKSDI 175
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNEV 242
T I V+ A+ ++ + + I LI Q++ I++E+
Sbjct: 176 SLVVAGTKD-AINMVEAGADEVP--EETMLEAIMFGHEEIKRLIAFQEE-IASEI 226
>gi|213052977|ref|ZP_03345855.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Typhi str. E00-7866]
gi|213425438|ref|ZP_03358188.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Typhi str. E02-1180]
gi|213582311|ref|ZP_03364137.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Typhi str. E98-0664]
gi|213609547|ref|ZP_03369373.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Typhi str. E98-2068]
gi|213646150|ref|ZP_03376203.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Typhi str. J185]
gi|289825796|ref|ZP_06544964.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Typhi str. E98-3139]
Length = 721
Score = 146 bits (367), Expect = 3e-33, Method: Composition-based stats.
Identities = 45/242 (18%), Positives = 92/242 (38%), Gaps = 18/242 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR+++ +R + + V GS L G+T L TATL + +V + +
Sbjct: 325 RIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVLDELMGERTD 384
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + R+ G + R + +V+ + + +
Sbjct: 385 SFLFHYNFPPYSVGETGMVGSPKRREIGHGRL----AKRGVLAVMPDMDKFPYTVRVVSE 440
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ GA +AL D ++ + V +G + +
Sbjct: 441 ITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLSD---------I 491
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D + G I +Q + +++ LN AK ++ + +
Sbjct: 492 LGDEDHLGDMDFKVAGSRDG-ISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQA 550
Query: 238 IS 239
I+
Sbjct: 551 IN 552
Score = 94.9 bits (234), Expect = 9e-18, Method: Composition-based stats.
Identities = 38/232 (16%), Positives = 76/232 (32%), Gaps = 27/232 (11%)
Query: 14 ISLTRRV-SKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----HGWITAEYGMLPR 68
++L + ++ A + +V DT + T ++K + T G +P
Sbjct: 26 VTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVNYQERTYAAGRIPG 85
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
S R GR I R+I R +R + + Q+I +
Sbjct: 86 SFFRR------EGRPSEGETLIARLIDRPVRPLFPEGFVNEVQVIATVVSVNPQVNPDIV 139
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+ GA A G + A G + +++ E +D
Sbjct: 140 AMIGASAA-------------LSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLD 186
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
T++ ++ V+ AE S+D + ++ +I+ D++
Sbjct: 187 LVVAGTEA-AVLMVESEAEL--LSEDTMLGAVVFGHEQQQVVIQAINDLVKE 235
>gi|311030081|ref|ZP_07708171.1| polynucleotide phosphorylase/polyadenylase [Bacillus sp. m3-13]
Length = 715
Score = 146 bits (367), Expect = 3e-33, Method: Composition-based stats.
Identities = 42/244 (17%), Positives = 82/244 (33%), Gaps = 18/244 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56
+R GR+ +++R ++ + GS L G T L+ T + ++ + +
Sbjct: 325 VRPDGRKSDEIRPLASEVGLLPRTHGSGLFTRGQTQALSICTLGALGDVQILDGLGIEEE 384
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y S G R+ G RAL V+ + +
Sbjct: 385 KRFMHHYNFPLFSVGETGPMRGPGRREIGHGALG----ERALDPVIPSEKDFPYTVRLVS 440
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V++++G T A+I + +A+ D ++ + + KG +
Sbjct: 441 EVLESNGSTSQASICASTLAMMDAGVPIKAPVAGIAMGLIKKGEHYTVLSD--------- 491
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T G + +Q + S+D L AK ++
Sbjct: 492 IQGMEDHLGDMDFKVAGTAKG-VTALQMDIKIEGLSRDILEEALQQAKIGRMHILDSMLA 550
Query: 237 VISN 240
I
Sbjct: 551 TIDE 554
Score = 112 bits (279), Expect = 5e-23, Method: Composition-based stats.
Identities = 40/231 (17%), Positives = 90/231 (38%), Gaps = 26/231 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATL---EEKVPMWIRNTKHGWITAEYGMLP 67
R +++ ++K A G+ +V++GDT +L+TAT +K+ + + G +P
Sbjct: 25 RNLTVEVGQLAKQANGAVMVRYGDTAVLSTATASKEPKKLDFFPLTVNYEERLYAVGKIP 84
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R GR ++ R+I R +R + Q+I + + +
Sbjct: 85 GGFIKR------EGRPSEKAVLASRLIDRPIRPLFADGFRNEVQVISIVMSVDQNCSSEM 138
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
AA+ G+ +A +G +A ++ G + +++ + + D+
Sbjct: 139 AAMFGSSLA-------------LSVSDIPFQGPIAGVTVGRINDEFVINPNVDQLEKSDI 185
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
+ T I V+ A+ ++ + + I LI Q++++
Sbjct: 186 NLVVAGTKD-AINMVEAGADEVP--EEVMLEAIMFGHNEIKRLIAFQEEIV 233
>gi|256372516|ref|YP_003110340.1| ribonuclease PH [Acidimicrobium ferrooxidans DSM 10331]
gi|256009100|gb|ACU54667.1| ribonuclease PH [Acidimicrobium ferrooxidans DSM 10331]
Length = 238
Score = 146 bits (367), Expect = 3e-33, Method: Composition-based stats.
Identities = 113/231 (48%), Positives = 156/231 (67%), Gaps = 2/231 (0%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R GR ++R +++T ++ A GS L++ G T +L T +LEE+VP W+R GW++A
Sbjct: 4 RPVGRGAAELRPVAITPDFTEMAPGSVLMRMGRTAVLCTVSLEERVPAWLRGQGRGWVSA 63
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
EY +LP ST R REAV GRQ GR+ EIQR+IGRALRSVVDL LG Q+++DCDV+QA
Sbjct: 64 EYALLPGSTPTRTAREAVRGRQQGRTVEIQRLIGRALRSVVDLERLGEHQLVVDCDVLQA 123
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
DGGTRTAAITG ++AL L+ + + + + +AA+S G++ G P++DLDY E
Sbjct: 124 DGGTRTAAITGGFLALERALERLAEGGLVQPAALTGR--LAAVSVGVVDGEPLLDLDYDE 181
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
DS DVD N VMTD G VEVQG+AE A F++ +L LA+ I +L++
Sbjct: 182 DSRADVDMNVVMTDGGRYVEVQGAAEGAPFAKATLVELLKLAERGIGELLE 232
>gi|157150941|ref|YP_001449663.1| polynucleotide phosphorylase/polyadenylase [Streptococcus gordonii
str. Challis substr. CH1]
gi|187611296|sp|A8AV53|PNP_STRGC RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|157075735|gb|ABV10418.1| polyribonucleotide nucleotidyltransferase [Streptococcus gordonii
str. Challis substr. CH1]
Length = 728
Score = 146 bits (367), Expect = 3e-33, Method: Composition-based stats.
Identities = 43/242 (17%), Positives = 81/242 (33%), Gaps = 18/242 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56
+R GR+ +++R + GS L G T L+ T E ++ +
Sbjct: 317 VRPDGRKVDEIRPLDAEVDYLPRVHGSGLFTRGQTQALSVLTLAPMGETQIVDGLDPEYK 376
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y S G + A R+ G RAL V+ I +
Sbjct: 377 KRFMHHYNFPQYSVGETGRYGAPGRREIGHGALG----ERALEQVLPSLEEFPYAIRLVA 432
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V++++G + A+I +AL ++ + + + D
Sbjct: 433 EVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISD---------GNNYTVLTD 483
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T G I +Q + + + L+ AK +++ L +
Sbjct: 484 IQGLEDHFGDMDFKVAGTREG-ITALQMDIKIEGITAEILTEALDQAKKARFEILDLIEA 542
Query: 237 VI 238
I
Sbjct: 543 TI 544
Score = 115 bits (288), Expect = 4e-24, Method: Composition-based stats.
Identities = 45/232 (19%), Positives = 86/232 (37%), Gaps = 26/232 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKV---PMWIRNTKHGWITAEYGMLP 67
RE+ + V+K A GS +V++G++ +LT AT+ +K+ + + G P
Sbjct: 13 RELVVETGQVAKQANGSAVVRYGESTVLTAATMSKKMATGDFFPLQVNYEEKMYAAGKYP 72
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R GR + R+I R +R + Q+I D +
Sbjct: 73 GGFNKR------EGRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDEDASPQM 126
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
AA+ G+ +A G +A + G + G I++ + +
Sbjct: 127 AAMFGSSLA-------------LSISDIPFNGPIAGVQVGYVDGEFIINPSKEQKEVSLL 173
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
+ T I V+ A+ S+D L + +LI Q+++++
Sbjct: 174 ELTVAGTKD-AINMVESGAKE--LSEDVMLEALLKGHQAVKELIAFQEEIVA 222
>gi|551833|gb|AAA83905.1| polynucleotide phosphorilase [Escherichia coli]
Length = 711
Score = 146 bits (367), Expect = 3e-33, Method: Composition-based stats.
Identities = 44/242 (18%), Positives = 91/242 (37%), Gaps = 18/242 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR+++ +R + + V GS L G+T L TATL + +V + +
Sbjct: 315 RIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLRTARDAQVLDELMGERTD 374
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + R+ G + R + +V+ + + +
Sbjct: 375 TFLFHYNFPPYSVGETGMVGSPKRREIGHGRL----AKRGVLAVMPDMDKFPYTVRVVSE 430
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ GA +A D ++ + V +G + +
Sbjct: 431 ITESNGSSSMASVCGASLASMDAGVPIKAAVAGIAMGLVKEGDNYVVLSD---------I 481
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D + G I +Q + +++ LN AK ++ + +
Sbjct: 482 LGDEDHLGDMDFKVAGSRDG-ISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQA 540
Query: 238 IS 239
I+
Sbjct: 541 IN 542
Score = 94.5 bits (233), Expect = 1e-17, Method: Composition-based stats.
Identities = 36/232 (15%), Positives = 76/232 (32%), Gaps = 27/232 (11%)
Query: 14 ISLTRRV-SKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----HGWITAEYGMLPR 68
++L + ++ A + +V DT + T ++K + T G +P
Sbjct: 16 VTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVNYQERTYAAGRIPG 75
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
S R GR I R+I R +R + + Q+I +
Sbjct: 76 SFFRR------EGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVNPDIV 129
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+ GA A G + A G + +++ E +D
Sbjct: 130 AMIGASAA-------------LSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLD 176
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
T++ ++ V+ +E S+D + ++ +I+ +++
Sbjct: 177 LVVAGTEA-AVLMVE--SEAQLLSEDQMLGAVVFGHEQQQVVIQNINELVKE 225
>gi|281180208|dbj|BAI56538.1| polynucleotide phosphorylase [Escherichia coli SE15]
Length = 734
Score = 146 bits (367), Expect = 3e-33, Method: Composition-based stats.
Identities = 45/242 (18%), Positives = 92/242 (38%), Gaps = 18/242 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR+++ +R + + V GS L G+T L TATL + +V + +
Sbjct: 338 RIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVLDELMGERTD 397
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + R+ G + R + +V+ + + +
Sbjct: 398 TFLFHYNFPPYSVGETGMVGSPKRREIGHGRL----AKRGVLAVMPDMDKFPYTVRVVSE 453
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ GA +AL D ++ + V +G + +
Sbjct: 454 ITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLSD---------I 504
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D + G I +Q + +++ LN AK ++ + +
Sbjct: 505 LGDEDHLGDMDFKVAGSRDG-ISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQA 563
Query: 238 IS 239
I+
Sbjct: 564 IN 565
Score = 96.1 bits (237), Expect = 4e-18, Method: Composition-based stats.
Identities = 37/232 (15%), Positives = 76/232 (32%), Gaps = 27/232 (11%)
Query: 14 ISLTRRV-SKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----HGWITAEYGMLPR 68
++L + ++ A + +V DT + T ++K + T G +P
Sbjct: 39 VTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVNYQERTYAAGRIPG 98
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
S R GR I R+I R +R + + Q+I +
Sbjct: 99 SFFRR------EGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVNPDIV 152
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+ GA A G + A G + +++ E +D
Sbjct: 153 AMIGASAA-------------LSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLD 199
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
T++ ++ V+ AE S+D + ++ +I+ +++
Sbjct: 200 LVVAGTEA-AVLMVESEAEL--LSEDQMLGAVVFGHEQQQVVIQNINELVKE 248
>gi|145698316|ref|NP_417633.4| polynucleotide phosphorylase/polyadenylase [Escherichia coli str.
K-12 substr. MG1655]
gi|157162649|ref|YP_001459967.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli HS]
gi|194438823|ref|ZP_03070909.1| polyribonucleotide nucleotidyltransferase [Escherichia coli 101-1]
gi|238902268|ref|YP_002928064.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli
BW2952]
gi|253772000|ref|YP_003034831.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli
'BL21-Gold(DE3)pLysS AG']
gi|254038330|ref|ZP_04872388.1| polynucleotide phosphorylase/polyadenylase [Escherichia sp. 1_1_43]
gi|256024260|ref|ZP_05438125.1| polynucleotide phosphorylase/polyadenylase [Escherichia sp.
4_1_40B]
gi|297517605|ref|ZP_06935991.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli OP50]
gi|301025991|ref|ZP_07189473.1| polyribonucleotide nucleotidyltransferase [Escherichia coli MS
196-1]
gi|307139851|ref|ZP_07499207.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli H736]
gi|1172545|sp|P05055|PNP_ECOLI RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|187610300|sp|A8A4Y0|PNP_ECOHS RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|257096729|sp|B1XGX6|PNP_ECODH RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|259534118|sp|C4ZSQ5|PNP_ECOBW RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|145693187|gb|AAC76198.2| polynucleotide phosphorylase/polyadenylase [Escherichia coli str.
K-12 substr. MG1655]
gi|157068329|gb|ABV07584.1| polyribonucleotide nucleotidyltransferase [Escherichia coli HS]
gi|194422295|gb|EDX38296.1| polyribonucleotide nucleotidyltransferase [Escherichia coli 101-1]
gi|226839954|gb|EEH71975.1| polynucleotide phosphorylase/polyadenylase [Escherichia sp. 1_1_43]
gi|238862078|gb|ACR64076.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli
BW2952]
gi|253323044|gb|ACT27646.1| Polyribonucleotide nucleotidyltransferase [Escherichia coli
'BL21-Gold(DE3)pLysS AG']
gi|260447807|gb|ACX38229.1| Polyribonucleotide nucleotidyltransferase [Escherichia coli DH1]
gi|299879886|gb|EFI88097.1| polyribonucleotide nucleotidyltransferase [Escherichia coli MS
196-1]
gi|313848762|emb|CAQ33499.2| polynucleotide phosphorylase monomer, subunit of polynucleotide
phosphorylase and degradosome [Escherichia coli
BL21(DE3)]
gi|315137752|dbj|BAJ44911.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli DH1]
gi|323936140|gb|EGB32434.1| polyribonucleotide nucleotidyltransferase [Escherichia coli E1520]
gi|323961064|gb|EGB56679.1| polyribonucleotide nucleotidyltransferase [Escherichia coli H489]
gi|323970271|gb|EGB65542.1| polyribonucleotide nucleotidyltransferase [Escherichia coli TA007]
gi|332345121|gb|AEE58455.1| polyribonucleotide nucleotidyltransferase [Escherichia coli UMNK88]
Length = 711
Score = 146 bits (367), Expect = 3e-33, Method: Composition-based stats.
Identities = 45/242 (18%), Positives = 92/242 (38%), Gaps = 18/242 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR+++ +R + + V GS L G+T L TATL + +V + +
Sbjct: 315 RIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVLDELMGERTD 374
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + R+ G + R + +V+ + + +
Sbjct: 375 TFLFHYNFPPYSVGETGMVGSPKRREIGHGRL----AKRGVLAVMPDMDKFPYTVRVVSE 430
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ GA +AL D ++ + V +G + +
Sbjct: 431 ITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLSD---------I 481
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D + G I +Q + +++ LN AK ++ + +
Sbjct: 482 LGDEDHLGDMDFKVAGSRDG-ISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQA 540
Query: 238 IS 239
I+
Sbjct: 541 IN 542
Score = 94.5 bits (233), Expect = 1e-17, Method: Composition-based stats.
Identities = 36/232 (15%), Positives = 76/232 (32%), Gaps = 27/232 (11%)
Query: 14 ISLTRRV-SKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----HGWITAEYGMLPR 68
++L + ++ A + +V DT + T ++K + T G +P
Sbjct: 16 VTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVNYQERTYAAGRIPG 75
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
S R GR I R+I R +R + + Q+I +
Sbjct: 76 SFFRR------EGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVNPDIV 129
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+ GA A G + A G + +++ E +D
Sbjct: 130 AMIGASAA-------------LSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLD 176
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
T++ ++ V+ +E S+D + ++ +I+ +++
Sbjct: 177 LVVAGTEA-AVLMVE--SEAQLLSEDQMLGAVVFGHEQQQVVIQNINELVKE 225
>gi|332086104|gb|EGI91266.1| polyribonucleotide nucleotidyltransferase [Shigella boydii 5216-82]
Length = 711
Score = 146 bits (367), Expect = 3e-33, Method: Composition-based stats.
Identities = 45/242 (18%), Positives = 92/242 (38%), Gaps = 18/242 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR+++ +R + + V GS L G+T L TATL + +V + +
Sbjct: 315 RIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVLDELMGERTD 374
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + R+ G + R + +V+ + + +
Sbjct: 375 TFLFHYNFPPYSVGETGMVGSPKRREIGHGRL----AKRGVLAVMPDMDKFPYTVRVVSE 430
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ GA +AL D ++ + V +G + +
Sbjct: 431 ITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLSD---------I 481
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D + G I +Q + +++ LN AK ++ + +
Sbjct: 482 LGDEDHLGDMDFKVAGSRDG-ISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQA 540
Query: 238 IS 239
I+
Sbjct: 541 IN 542
Score = 96.1 bits (237), Expect = 4e-18, Method: Composition-based stats.
Identities = 37/232 (15%), Positives = 76/232 (32%), Gaps = 27/232 (11%)
Query: 14 ISLTRRV-SKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----HGWITAEYGMLPR 68
++L + ++ A + +V DT + T ++K + T G +P
Sbjct: 16 VTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVNYQERTYAAGRIPG 75
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
S R GR I R+I R +R + + Q+I +
Sbjct: 76 SFFRR------EGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVNPDIV 129
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+ GA A G + A G + +++ E +D
Sbjct: 130 AMIGASAA-------------LSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLD 176
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
T++ ++ V+ AE S+D + ++ +I+ +++
Sbjct: 177 LVVAGTEA-AVLMVESEAEL--LSEDQMLGAVVFGHEQQQVVIQNINELVKE 225
>gi|261248448|emb|CBG26285.1| polynucleotide phosphorylase [Salmonella enterica subsp. enterica
serovar Typhimurium str. D23580]
Length = 711
Score = 146 bits (367), Expect = 3e-33, Method: Composition-based stats.
Identities = 45/242 (18%), Positives = 92/242 (38%), Gaps = 18/242 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR+++ +R + + V GS L G+T L TATL + +V + +
Sbjct: 315 RIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVLDELMGERTD 374
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + R+ G + R + +V+ + + +
Sbjct: 375 SFLFHYNFPPYSVGETGMVGSPKRREIGHGRL----AKRGVLAVMPDMDKFPYTVRVVSE 430
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ GA +AL D ++ + V +G + +
Sbjct: 431 ITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLSD---------I 481
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D + G I +Q + +++ LN AK ++ + +
Sbjct: 482 LGDEDHLGDMDFKVAGSRDG-ISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQA 540
Query: 238 IS 239
I+
Sbjct: 541 IN 542
Score = 92.6 bits (228), Expect = 4e-17, Method: Composition-based stats.
Identities = 38/232 (16%), Positives = 76/232 (32%), Gaps = 27/232 (11%)
Query: 14 ISLTRRV-SKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----HGWITAEYGMLPR 68
++L + ++ A + +V DT + T ++K + T G +P
Sbjct: 16 VTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVNYQERTYAAGRIPG 75
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
S R GR I R+I R +R + + Q+I +
Sbjct: 76 SFFRR------EGRPSEGETLIARLIDRPVRPLFPEGFVNEVQVIATVVSVNPQVNPDIV 129
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+ GA A G + A G + +++ E +D
Sbjct: 130 AMIGASAA-------------LSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLD 176
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
T++ ++ V+ AE S+D + ++ +I+ D++
Sbjct: 177 LVAAGTEA-AVLMVESEAEL--LSEDTMLGAVVFGHEQQQVVIQAINDLVKE 225
>gi|157158403|ref|YP_001464640.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli
E24377A]
gi|187775793|ref|ZP_02798176.2| polyribonucleotide nucleotidyltransferase [Escherichia coli O157:H7
str. EC4196]
gi|188024828|ref|ZP_02774262.2| polyribonucleotide nucleotidyltransferase [Escherichia coli O157:H7
str. EC4113]
gi|188495596|ref|ZP_03002866.1| polyribonucleotide nucleotidyltransferase [Escherichia coli 53638]
gi|189010332|ref|ZP_02806314.2| polyribonucleotide nucleotidyltransferase [Escherichia coli O157:H7
str. EC4076]
gi|189401923|ref|ZP_02779152.2| polyribonucleotide nucleotidyltransferase [Escherichia coli O157:H7
str. EC4401]
gi|189403294|ref|ZP_02794589.2| polyribonucleotide nucleotidyltransferase [Escherichia coli O157:H7
str. EC4486]
gi|189404087|ref|ZP_02787137.2| polyribonucleotide nucleotidyltransferase [Escherichia coli O157:H7
str. EC4501]
gi|189404797|ref|ZP_02811056.2| polyribonucleotide nucleotidyltransferase [Escherichia coli O157:H7
str. EC869]
gi|189405568|ref|ZP_02822772.2| polyribonucleotide nucleotidyltransferase [Escherichia coli O157:H7
str. EC508]
gi|193061952|ref|ZP_03043048.1| polyribonucleotide nucleotidyltransferase [Escherichia coli E22]
gi|194427762|ref|ZP_03060309.1| polyribonucleotide nucleotidyltransferase [Escherichia coli B171]
gi|194433724|ref|ZP_03065999.1| polyribonucleotide nucleotidyltransferase [Shigella dysenteriae
1012]
gi|195938384|ref|ZP_03083766.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli
O157:H7 str. EC4024]
gi|208809595|ref|ZP_03251932.1| polyribonucleotide nucleotidyltransferase [Escherichia coli O157:H7
str. EC4206]
gi|208812895|ref|ZP_03254224.1| polyribonucleotide nucleotidyltransferase [Escherichia coli O157:H7
str. EC4045]
gi|208818367|ref|ZP_03258687.1| polyribonucleotide nucleotidyltransferase [Escherichia coli O157:H7
str. EC4042]
gi|209397723|ref|YP_002272635.1| polyribonucleotide nucleotidyltransferase [Escherichia coli O157:H7
str. EC4115]
gi|217327602|ref|ZP_03443685.1| polyribonucleotide nucleotidyltransferase [Escherichia coli O157:H7
str. TW14588]
gi|254795115|ref|YP_003079952.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli
O157:H7 str. TW14359]
gi|256018916|ref|ZP_05432781.1| polynucleotide phosphorylase/polyadenylase [Shigella sp. D9]
gi|261228176|ref|ZP_05942457.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli
O157:H7 str. FRIK2000]
gi|261255032|ref|ZP_05947565.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli
O157:H7 str. FRIK966]
gi|293449501|ref|ZP_06663922.1| polyribonucleotide nucleotidyltransferase [Escherichia coli B088]
gi|307313129|ref|ZP_07592755.1| polyribonucleotide nucleotidyltransferase [Escherichia coli W]
gi|187610299|sp|A7ZS61|PNP_ECO24 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|187610334|sp|Q8X9M3|PNP_ECO57 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|187611306|sp|Q3YX77|PNP_SHISS RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|226702649|sp|B5YS54|PNP_ECO5E RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|257096725|sp|B7LH99|PNP_ECO55 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|257096726|sp|B7NKN3|PNP_ECO7I RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|257096731|sp|B6I1N9|PNP_ECOSE RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|157080433|gb|ABV20141.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
E24377A]
gi|187770877|gb|EDU34721.1| polyribonucleotide nucleotidyltransferase [Escherichia coli O157:H7
str. EC4196]
gi|188016356|gb|EDU54478.1| polyribonucleotide nucleotidyltransferase [Escherichia coli O157:H7
str. EC4113]
gi|188490795|gb|EDU65898.1| polyribonucleotide nucleotidyltransferase [Escherichia coli 53638]
gi|189001076|gb|EDU70062.1| polyribonucleotide nucleotidyltransferase [Escherichia coli O157:H7
str. EC4076]
gi|189358585|gb|EDU77004.1| polyribonucleotide nucleotidyltransferase [Escherichia coli O157:H7
str. EC4401]
gi|189361407|gb|EDU79826.1| polyribonucleotide nucleotidyltransferase [Escherichia coli O157:H7
str. EC4486]
gi|189367622|gb|EDU86038.1| polyribonucleotide nucleotidyltransferase [Escherichia coli O157:H7
str. EC4501]
gi|189374178|gb|EDU92594.1| polyribonucleotide nucleotidyltransferase [Escherichia coli O157:H7
str. EC869]
gi|189379858|gb|EDU98274.1| polyribonucleotide nucleotidyltransferase [Escherichia coli O157:H7
str. EC508]
gi|192932172|gb|EDV84770.1| polyribonucleotide nucleotidyltransferase [Escherichia coli E22]
gi|194414270|gb|EDX30545.1| polyribonucleotide nucleotidyltransferase [Escherichia coli B171]
gi|194417987|gb|EDX34081.1| polyribonucleotide nucleotidyltransferase [Shigella dysenteriae
1012]
gi|208729396|gb|EDZ78997.1| polyribonucleotide nucleotidyltransferase [Escherichia coli O157:H7
str. EC4206]
gi|208734172|gb|EDZ82859.1| polyribonucleotide nucleotidyltransferase [Escherichia coli O157:H7
str. EC4045]
gi|208738490|gb|EDZ86172.1| polyribonucleotide nucleotidyltransferase [Escherichia coli O157:H7
str. EC4042]
gi|209159123|gb|ACI36556.1| polyribonucleotide nucleotidyltransferase [Escherichia coli O157:H7
str. EC4115]
gi|217319969|gb|EEC28394.1| polyribonucleotide nucleotidyltransferase [Escherichia coli O157:H7
str. TW14588]
gi|254594515|gb|ACT73876.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli
O157:H7 str. TW14359]
gi|291322591|gb|EFE62020.1| polyribonucleotide nucleotidyltransferase [Escherichia coli B088]
gi|306907040|gb|EFN37548.1| polyribonucleotide nucleotidyltransferase [Escherichia coli W]
gi|315062472|gb|ADT76799.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli W]
gi|320181440|gb|EFW56358.1| Polyribonucleotide nucleotidyltransferase [Shigella boydii ATCC
9905]
gi|320189518|gb|EFW64177.1| Polyribonucleotide nucleotidyltransferase [Escherichia coli O157:H7
str. EC1212]
gi|320202078|gb|EFW76653.1| Polyribonucleotide nucleotidyltransferase [Escherichia coli
EC4100B]
gi|320640236|gb|EFX09808.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli
O157:H7 str. G5101]
gi|320645533|gb|EFX14542.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli
O157:H- str. 493-89]
gi|320650843|gb|EFX19300.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli
O157:H- str. H 2687]
gi|320656224|gb|EFX24136.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli O55:H7
str. 3256-97 TW 07815]
gi|320661914|gb|EFX29322.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli O55:H7
str. USDA 5905]
gi|320666749|gb|EFX33728.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli
O157:H7 str. LSU-61]
gi|323162858|gb|EFZ48693.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
E128010]
gi|323165122|gb|EFZ50912.1| polyribonucleotide nucleotidyltransferase [Shigella sonnei 53G]
gi|323376940|gb|ADX49208.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KO11]
gi|323941734|gb|EGB37913.1| polyribonucleotide nucleotidyltransferase [Escherichia coli E482]
gi|323946980|gb|EGB42996.1| polyribonucleotide nucleotidyltransferase [Escherichia coli H120]
gi|324119531|gb|EGC13413.1| polyribonucleotide nucleotidyltransferase [Escherichia coli E1167]
gi|326337866|gb|EGD61700.1| Polyribonucleotide nucleotidyltransferase [Escherichia coli O157:H7
str. 1125]
gi|326347435|gb|EGD71160.1| Polyribonucleotide nucleotidyltransferase [Escherichia coli O157:H7
str. 1044]
Length = 711
Score = 146 bits (367), Expect = 3e-33, Method: Composition-based stats.
Identities = 45/242 (18%), Positives = 92/242 (38%), Gaps = 18/242 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR+++ +R + + V GS L G+T L TATL + +V + +
Sbjct: 315 RIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVLDELMGERTD 374
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + R+ G + R + +V+ + + +
Sbjct: 375 TFLFHYNFPPYSVGETGMVGSPKRREIGHGRL----AKRGVLAVMPDMDKFPYTVRVVSE 430
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ GA +AL D ++ + V +G + +
Sbjct: 431 ITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLSD---------I 481
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D + G I +Q + +++ LN AK ++ + +
Sbjct: 482 LGDEDHLGDMDFKVAGSRDG-ISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQA 540
Query: 238 IS 239
I+
Sbjct: 541 IN 542
Score = 96.1 bits (237), Expect = 4e-18, Method: Composition-based stats.
Identities = 37/232 (15%), Positives = 76/232 (32%), Gaps = 27/232 (11%)
Query: 14 ISLTRRV-SKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----HGWITAEYGMLPR 68
++L + ++ A + +V DT + T ++K + T G +P
Sbjct: 16 VTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVNYQERTYAAGRIPG 75
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
S R GR I R+I R +R + + Q+I +
Sbjct: 76 SFFRR------EGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVNPDIV 129
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+ GA A G + A G + +++ E +D
Sbjct: 130 AMIGASAA-------------LSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLD 176
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
T++ ++ V+ AE S+D + ++ +I+ +++
Sbjct: 177 LVVAGTEA-AVLMVESEAEL--LSEDQMLGAVVFGHEQQQVVIQNINELVKE 225
>gi|226313012|ref|YP_002772906.1| polyribonucleotide nucleotidyltransferase [Brevibacillus brevis
NBRC 100599]
gi|254782708|sp|C0ZF43|PNP_BREBN RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|226095960|dbj|BAH44402.1| polyribonucleotide nucleotidyltransferase [Brevibacillus brevis
NBRC 100599]
Length = 715
Score = 146 bits (367), Expect = 3e-33, Method: Composition-based stats.
Identities = 43/244 (17%), Positives = 88/244 (36%), Gaps = 16/244 (6%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56
+R GR N++R +S + GS + G T L+ T + ++ + +
Sbjct: 317 VRPDGRALNEIRPLSSETTILSRTHGSAMFTRGQTQALSVCTLGALGDVQILDGLGLEES 376
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P S G R+ G RA+ ++ I +
Sbjct: 377 KRFMHHYNFPPYSVGEARPLRPPGRREIGHGALG----ERAIEPIIPSEVEFPYTIRLVS 432
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+VI+++G T A+I + +AL D ++ + ++ + S + D
Sbjct: 433 EVIESNGSTSQASICASVLALMDAGVPIKAPVAGIAMGLIMSKDEKSFS-------ILTD 485
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T++G + +Q + + +++ L A+ ++
Sbjct: 486 IQGMEDHLGDMDFKVAGTEAG-VTAIQMDIKISGINREILELALEQARVGRLHILNHMMS 544
Query: 237 VISN 240
IS
Sbjct: 545 TISE 548
Score = 105 bits (262), Expect = 5e-21, Method: Composition-based stats.
Identities = 44/233 (18%), Positives = 85/233 (36%), Gaps = 26/233 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKV---PMWIRNTKHGWITAEYGMLP 67
R+++L ++K A GS LV++GDT +L+ T+ ++ + + G +P
Sbjct: 15 RKLTLEFGKMAKQAHGSVLVRYGDTAILSAVTVSKEPKPLDFFPLTVNYEERLYAVGKIP 74
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R GR ++ R+I R +R + QI+ + D
Sbjct: 75 GGFIKR------EGRPSEKAILASRLIDRPVRPLFAEGFRNDVQIVNTVLSVDQDCSPEI 128
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
AA+ G AL +G +A + G + G +++ + D+
Sbjct: 129 AAMIGTSAALC-------------VSEIPFEGPIAGVIVGRIDGEFVINPTVAQAEKSDI 175
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
T I V+ +A + + + D I L++ Q ++S
Sbjct: 176 HLTVAGT-HKAINMVEAAANQVP--EAIMLEAIMAGHDVIKQLVEFQNMIVSE 225
>gi|329116899|ref|ZP_08245616.1| polyribonucleotide nucleotidyltransferase [Streptococcus parauberis
NCFD 2020]
gi|326907304|gb|EGE54218.1| polyribonucleotide nucleotidyltransferase [Streptococcus parauberis
NCFD 2020]
Length = 748
Score = 146 bits (367), Expect = 3e-33, Method: Composition-based stats.
Identities = 43/244 (17%), Positives = 81/244 (33%), Gaps = 18/244 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56
+R GR+ +++R + GS L G T L+ T E ++ + +
Sbjct: 317 VRPDGRKIDEIRPLDAQIDFLPKVHGSGLFTRGQTQALSVLTLAPMGETQIIDGLDDEYK 376
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y S G + A R+ G RAL V+ I +
Sbjct: 377 KRFLHHYNFPQYSVGETGRYGAAGRREIGHGALG----ERALEQVLPSLEDFPYAIRLVA 432
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V++++G + A+I +AL ++ + + + D
Sbjct: 433 EVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISD---------GTNYTVLTD 483
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T G I +Q + + L AK +++ L +
Sbjct: 484 IQGLEDHFGDMDFKVAGTREG-ITALQMDIKIEGITPQILEEALAQAKKARFEILDLIQA 542
Query: 237 VISN 240
I+
Sbjct: 543 TIAE 546
Score = 103 bits (257), Expect = 2e-20, Method: Composition-based stats.
Identities = 40/231 (17%), Positives = 83/231 (35%), Gaps = 26/231 (11%)
Query: 13 EISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKV---PMWIRNTKHGWITAEYGMLPR 68
+ + V+K A G+ +V++G++ +LT A + +K+ + + G P
Sbjct: 14 PLVVEVGQVAKQANGATVVRYGESTVLTAAVMSKKMATGDFFPLQVNYEEKMYAAGKFPG 73
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
R GR + R+I R +R + Q+I + A
Sbjct: 74 GFMKR------EGRPSTDATLTARLIDRPIRPMFADGFRNEIQVINTVLSFDENASAPMA 127
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+ G+ +A G +A + G + G I++ + + ++
Sbjct: 128 AMFGSSLA-------------LSISDIPFNGPIAGVQVGYIDGEYIINPNKAQLEASLLE 174
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
+ I V+ A+ S+D L I +LI Q+++++
Sbjct: 175 LTVAGSKE-AINMVESGAKE--LSEDIMLEALLRGHKAIQELIAFQEEIVA 222
>gi|16766580|ref|NP_462195.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Typhimurium str. LT2]
gi|56415214|ref|YP_152289.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Paratyphi A str. ATCC 9150]
gi|197364144|ref|YP_002143781.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Paratyphi A str. AKU_12601]
gi|205354186|ref|YP_002227987.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Gallinarum str. 287/91]
gi|207858532|ref|YP_002245183.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Enteritidis str. P125109]
gi|81361497|sp|Q5PL97|PNP_SALPA RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|81521548|sp|Q8ZLT3|PNP_SALTY RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|187611314|sp|A9N728|PNP_SALPB RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|187611318|sp|Q57JI3|PNP_SALCH RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|226702684|sp|B5QZV4|PNP_SALEP RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|226702685|sp|B5REN2|PNP_SALG2 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|226702686|sp|B5BGJ1|PNP_SALPK RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|257096718|sp|C0PZ50|PNP_SALPC RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|16421841|gb|AAL22154.1| polynucleotide phosphorylase [Salmonella enterica subsp. enterica
serovar Typhimurium str. LT2]
gi|56129471|gb|AAV78977.1| polynucleotide phosphorylase [Salmonella enterica subsp. enterica
serovar Paratyphi A str. ATCC 9150]
gi|197095621|emb|CAR61189.1| polynucleotide phosphorylase [Salmonella enterica subsp. enterica
serovar Paratyphi A str. AKU_12601]
gi|205273967|emb|CAR38972.1| polynucleotide phosphorylase [Salmonella enterica subsp. enterica
serovar Gallinarum str. 287/91]
gi|206710335|emb|CAR34693.1| polynucleotide phosphorylase [Salmonella enterica subsp. enterica
serovar Enteritidis str. P125109]
gi|267995478|gb|ACY90363.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Typhimurium str. 14028S]
gi|301159832|emb|CBW19351.1| polynucleotide phosphorylase [Salmonella enterica subsp. enterica
serovar Typhimurium str. SL1344]
gi|332990140|gb|AEF09123.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Typhimurium str. UK-1]
Length = 711
Score = 146 bits (367), Expect = 3e-33, Method: Composition-based stats.
Identities = 45/242 (18%), Positives = 92/242 (38%), Gaps = 18/242 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR+++ +R + + V GS L G+T L TATL + +V + +
Sbjct: 315 RIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVLDELMGERTD 374
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + R+ G + R + +V+ + + +
Sbjct: 375 SFLFHYNFPPYSVGETGMVGSPKRREIGHGRL----AKRGVLAVMPDMDKFPYTVRVVSE 430
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ GA +AL D ++ + V +G + +
Sbjct: 431 ITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLSD---------I 481
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D + G I +Q + +++ LN AK ++ + +
Sbjct: 482 LGDEDHLGDMDFKVAGSRDG-ISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQA 540
Query: 238 IS 239
I+
Sbjct: 541 IN 542
Score = 94.9 bits (234), Expect = 9e-18, Method: Composition-based stats.
Identities = 38/232 (16%), Positives = 76/232 (32%), Gaps = 27/232 (11%)
Query: 14 ISLTRRV-SKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----HGWITAEYGMLPR 68
++L + ++ A + +V DT + T ++K + T G +P
Sbjct: 16 VTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVNYQERTYAAGRIPG 75
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
S R GR I R+I R +R + + Q+I +
Sbjct: 76 SFFRR------EGRPSEGETLIARLIDRPVRPLFPEGFVNEVQVIATVVSVNPQVNPDIV 129
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+ GA A G + A G + +++ E +D
Sbjct: 130 AMIGASAA-------------LSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLD 176
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
T++ ++ V+ AE S+D + ++ +I+ D++
Sbjct: 177 LVVAGTEA-AVLMVESEAEL--LSEDTMLGAVVFGHEQQQVVIQAINDLVKE 225
>gi|260175214|ref|ZP_05761626.1| polynucleotide phosphorylase/polyadenylase [Bacteroides sp. D2]
gi|315923445|ref|ZP_07919685.1| polyribonucleotide nucleotidyltransferase [Bacteroides sp. D2]
gi|313697320|gb|EFS34155.1| polyribonucleotide nucleotidyltransferase [Bacteroides sp. D2]
Length = 708
Score = 146 bits (367), Expect = 3e-33, Method: Composition-based stats.
Identities = 49/243 (20%), Positives = 87/243 (35%), Gaps = 18/243 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHG 57
RL GR+ ++R I GS + G+T LT+ T L+EK+ +
Sbjct: 319 RLDGRKTTEIRPIWCEVGPLPGPHGSAIFTRGETQSLTSVTLGTKLDEKIIDDVLEHGKE 378
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P STG + V R+ G RAL+ + + + D
Sbjct: 379 RFLLHYNFPPFSTGEAKAQRGVGRREIGHGHL----AWRALKGQIPADY--PYVVRVVSD 432
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+++++G + A + +AL D ++ + + + G + D+
Sbjct: 433 ILESNGSSSMATVCAGTLALMDAGVKIKKPVSGIAMGLIKN-------PGEEKYAVLSDI 485
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T G I Q + S + LN AK+ ++ +
Sbjct: 486 LGDEDHLGDMDFKVTGTKDG-ITATQMDIKVDGLSYEILERALNQAKEGRMHILGKITET 544
Query: 238 ISN 240
I+
Sbjct: 545 IAE 547
Score = 106 bits (265), Expect = 2e-21, Method: Composition-based stats.
Identities = 39/241 (16%), Positives = 76/241 (31%), Gaps = 26/241 (10%)
Query: 3 LSGRQENQMREISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
GR I+L ++K A+GS +++ G+T LL T +
Sbjct: 12 PDGRT------ITLETGKLAKQADGSVMLRMGNTMLLATVCAAKDAVPGTDFMPLQVEYK 65
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
E GR R++ RALR + +
Sbjct: 66 EKFAAFGRFP--GGFTKREGRASDYEILTCRLVDRALRPLFPDNYHAEVY---------- 113
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
+ V + D L + + G ++ + + G +++ + +
Sbjct: 114 ---VNIILFSADGVDMPDALAGLAASAALAVSDIPFNGPISEVRVARIDGQFVINPTFEQ 170
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
D+D T +I+ V+ E S+ + +A + I K Q + ++ E
Sbjct: 171 LEKADMDLMVAATYE-NIMMVE--GEMHEVSEAELLEAMKVAHEAIKVHCKAQME-LTEE 226
Query: 242 V 242
V
Sbjct: 227 V 227
>gi|241889884|ref|ZP_04777182.1| polyribonucleotide nucleotidyltransferase [Gemella haemolysans ATCC
10379]
gi|241863506|gb|EER67890.1| polyribonucleotide nucleotidyltransferase [Gemella haemolysans ATCC
10379]
Length = 695
Score = 146 bits (367), Expect = 3e-33, Method: Composition-based stats.
Identities = 46/244 (18%), Positives = 81/244 (33%), Gaps = 18/244 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
+R GR ++R ++ V GS L G T L TL +E++ + ++
Sbjct: 318 VRPDGRALTEIRPLASRVDVLPRTHGSALFTRGQTQSLGVVTLGNLSDEQIIDDLTQEEN 377
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y S G A R+ G RAL V+ I I
Sbjct: 378 KRFMLHYNFPAFSVGEVGFSRAPGRREIGHGALG----ERALAQVIPSKEDFPYTIRIVS 433
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
++++++G + A I +AL ++ + V K + D
Sbjct: 434 EILESNGSSSQATICSGSMALMAAGVPIKSQVAGIAMGLVKKDE---------HYTILTD 484
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T G I +Q + S+ L A+ ++
Sbjct: 485 IQGMEDHLGDMDFKVAGTAEG-ITALQMDIKIDGLSEQILKESLEQARVGRLQILDHMNS 543
Query: 237 VISN 240
+I+
Sbjct: 544 IIAE 547
Score = 104 bits (258), Expect = 2e-20, Method: Composition-based stats.
Identities = 43/231 (18%), Positives = 89/231 (38%), Gaps = 26/231 (11%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEK---VPMWIRNTKHGWITAEYGMLPRS 69
+++ +++ A + +VK+GDT +LTTA ++ V + + G +P
Sbjct: 17 LTVELGEMARQANAAVVVKYGDTVVLTTAVASKEAKDVDFFPLTVNYEEKMYAVGKIPGG 76
Query: 70 TGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAA 129
R GR G + R+I R +R + + Q+I ++ D AA
Sbjct: 77 FLRR------EGRPGTEATLAARLIDRPIRPLFEDGFRNEVQVISTVLSVEYDCDPVMAA 130
Query: 130 ITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDA 189
+ G+ + + KG +A ++ G + G +++ + VD
Sbjct: 131 MLGS-------------SLSLSVSNIPFKGPIAGVTVGYVDGEYVINPTVEQMERSTVDL 177
Query: 190 NFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
T I V+ A+ S++ + + I LI+ Q+ +++
Sbjct: 178 KVAGTSD-AINMVEAGAKE--VSEEIMLNAIMFGHEEIKRLIEFQQQIVNE 225
>gi|315617247|gb|EFU97856.1| polyribonucleotide nucleotidyltransferase [Escherichia coli 3431]
Length = 690
Score = 146 bits (367), Expect = 3e-33, Method: Composition-based stats.
Identities = 45/242 (18%), Positives = 92/242 (38%), Gaps = 18/242 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR+++ +R + + V GS L G+T L TATL + +V + +
Sbjct: 294 RIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVLDELMGERTD 353
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + R+ G + R + +V+ + + +
Sbjct: 354 TFLFHYNFPPYSVGETGMVGSPKRREIGHGRL----AKRGVLAVMPDMDKFPYTVRVVSE 409
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ GA +AL D ++ + V +G + +
Sbjct: 410 ITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLSD---------I 460
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D + G I +Q + +++ LN AK ++ + +
Sbjct: 461 LGDEDHLGDMDFKVAGSRDG-ISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQA 519
Query: 238 IS 239
I+
Sbjct: 520 IN 521
Score = 89.5 bits (220), Expect = 4e-16, Method: Composition-based stats.
Identities = 35/225 (15%), Positives = 73/225 (32%), Gaps = 26/225 (11%)
Query: 20 VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----HGWITAEYGMLPRSTGNRVK 75
+++ A + +V DT + T ++K + T G +P S R
Sbjct: 2 MARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVNYQERTYAAGRIPGSFFRR-- 59
Query: 76 REAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWV 135
GR I R+I R +R + + Q+I + A+ GA
Sbjct: 60 ----EGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVNPDIVAMIGASA 115
Query: 136 ALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTD 195
A G + A G + +++ E +D T+
Sbjct: 116 A-------------LSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVAGTE 162
Query: 196 SGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
+ ++ V+ +E S+D + ++ +I+ +++
Sbjct: 163 A-AVLMVE--SEAQLLSEDQMLGAVVFGHEQQQVVIQNINELVKE 204
>gi|86606857|ref|YP_475620.1| polynucleotide phosphorylase/polyadenylase [Synechococcus sp.
JA-3-3Ab]
gi|123504388|sp|Q2JQF4|PNP_SYNJA RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|86555399|gb|ABD00357.1| polyribonucleotide nucleotidyltransferase [Synechococcus sp.
JA-3-3Ab]
Length = 712
Score = 146 bits (367), Expect = 3e-33, Method: Composition-based stats.
Identities = 43/242 (17%), Positives = 87/242 (35%), Gaps = 18/242 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56
+R+ GR+ +++R +S + GS L G T +L+ T + + +
Sbjct: 321 VRVDGRKLDEVRPVSCRVGLIPRVHGSALFNRGLTQVLSITTLGTPGDAQELDDLHPVDE 380
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y S G + R+ G RAL V+ + +
Sbjct: 381 KRYMHHYNFPGFSVGEVRPSRSPGRREIGHGAL----AERALVPVLPKEEEFPYVVRVVS 436
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V+ ++G T A++ G+ ++L D ++ + + + +G + D
Sbjct: 437 EVLSSNGSTSMASVCGSTLSLMDAGVPIKAPVSGVAMGLIKEGDEV---------RILTD 487
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T +G I +Q + + D L AK ++ +
Sbjct: 488 IQGIEDFLGDMDFKVAGTRAG-ITALQMDMKITGITVDVVEKALLQAKAGRDYILDKMLE 546
Query: 237 VI 238
V+
Sbjct: 547 VL 548
Score = 96.5 bits (238), Expect = 3e-18, Method: Composition-based stats.
Identities = 47/233 (20%), Positives = 81/233 (34%), Gaps = 26/233 (11%)
Query: 12 REISLTRRV-SKYAEGSCLVKFGDTHLLTTAT---LEEKVPMWIRNTKHGWITAEYGMLP 67
REI + + + A + G+T +L TAT V + G +P
Sbjct: 13 REIDINIGLMAPQAGCGVWLTSGETSVLVTATRQAGRAGVDFLPLLVDYEERLYAAGRIP 72
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R GR R+ I R+I R LR + QI+ +
Sbjct: 73 GGYLRR------EGRPPERATLISRLIDRPLRPLFPEWLRDDVQIVATTLSVDDKVPPDV 126
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
I GA +A+H G VAA+ G++ I++ Y E D+
Sbjct: 127 LCILGASLAIHSARI-------------PFNGPVAAVRVGLVKDEFIINPTYAEIEAGDL 173
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
D G ++ V+ A + + + + + +L+K Q+ V ++
Sbjct: 174 DLVVAGCADG-VIMVEAGANQ--LPEKDVVEAIEFGFEAVQELLKAQQQVFAD 223
>gi|114562173|ref|YP_749686.1| polynucleotide phosphorylase/polyadenylase [Shewanella
frigidimarina NCIMB 400]
gi|122300513|sp|Q086G7|PNP_SHEFN RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|114333466|gb|ABI70848.1| Polyribonucleotide nucleotidyltransferase [Shewanella frigidimarina
NCIMB 400]
Length = 698
Score = 146 bits (367), Expect = 3e-33, Method: Composition-based stats.
Identities = 42/240 (17%), Positives = 86/240 (35%), Gaps = 10/240 (4%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R+ GR+ + +R +S+ V GS L G+T L T TL + ++ G T
Sbjct: 314 RIDGREPDMIRALSVLAGVLPRTHGSSLFTRGETQALVTCTLGTERDAQKIDSIMGERTN 373
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
+ + V + G R ++ R + +V+ + I + ++ ++
Sbjct: 374 RFMLHYNFPPYSVGETGMVGSPKRREIGHGKLAWRGMNAVMPSAEEFPYSIRVVSEITES 433
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
+G + A++ G +AL D ++ + V +G + + E
Sbjct: 434 NGSSSMASVCGTSLALMDAGVPIKTSVAGIAMGLVKEGDDFVVLSD---------ILGDE 484
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
D D+D T G I +Q + +++ L A ++ + I
Sbjct: 485 DHLGDMDFKVAGTRDG-ITALQMDIKIEGITKEIMDIALQQAYGARVHILNVMDQAIGTH 543
Score = 94.5 bits (233), Expect = 1e-17, Method: Composition-based stats.
Identities = 33/228 (14%), Positives = 73/228 (32%), Gaps = 27/228 (11%)
Query: 14 ISLTRRV-SKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGMLPR 68
++L V ++ A+ + L GDT +L T + + + T G +P
Sbjct: 15 VTLETGVIARQADAAVLASMGDTTVLVTVVGKKVADLSRDFFPLTVNYQEKTYAAGKIPG 74
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
R GR I R+I R +R + Q+II +
Sbjct: 75 GFFKR------EGRPSEDETLIARLIDRPIRPLFPNGFKNEVQVIITVVSVDPQIEPDIV 128
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
++ G A G + A G + +++ + +T ++
Sbjct: 129 SMIGTSAA-------------LAISGIPFSGPLGAARVGYINDEYVLNPTVDQLATSSLN 175
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
T + ++ V+ A+ +++ + D+ ++ +
Sbjct: 176 LVVAGTKA-AVLMVESEAKA--LAEEIMLGAVTYGHDQQQVVVDAIAE 220
>gi|154148101|ref|YP_001405843.1| polynucleotide phosphorylase/polyadenylase [Campylobacter hominis
ATCC BAA-381]
gi|187610248|sp|A7I002|PNP_CAMHC RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|153804110|gb|ABS51117.1| polyribonucleotide nucleotidyltransferase
(Polynucleotidephosphorylase) (PNPase) [Campylobacter
hominis ATCC BAA-381]
Length = 711
Score = 146 bits (367), Expect = 3e-33, Method: Composition-based stats.
Identities = 46/240 (19%), Positives = 82/240 (34%), Gaps = 22/240 (9%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRN------TK 55
R GR +++R IS+ + A GSCL G T L TL + + +
Sbjct: 323 RADGRALDEIRPISIETNILPNAHGSCLFTRGQTQALVVTTLGGETDAQVSDSLTSNTPI 382
Query: 56 HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115
+Y G ++ R+ G RAL V + I
Sbjct: 383 SERFMFQYNFPGFCVGEASPLKSPGRRELGHGNL----AKRALTPSVP--LNNPQVIRTV 436
Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIV 175
++++++G + A++ G ++L + + + AI ++
Sbjct: 437 SEILESNGSSSMASVCGGSLSLRAAGVSTLKLVAGVAMGLIFEDDKHAILTDIM------ 490
Query: 176 DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
ED D+D T G I +Q + S + LN AKD ++ L +
Sbjct: 491 ---GLEDHDGDMDFKVAGTREG-ITALQMDIKLGGISLEILREALNQAKDGRNYILNLME 546
Score = 80.7 bits (197), Expect = 2e-13, Method: Composition-based stats.
Identities = 36/226 (15%), Positives = 70/226 (30%), Gaps = 33/226 (14%)
Query: 16 LTRR-VSKYAEGSCLVKFGDTHLLTTATLEE---KVPMWIRNTKHGWITAEYGMLPRSTG 71
V+K A G+CL+K +T +L T E + ++ G +P
Sbjct: 14 FEINKVAKQAAGACLMKVKNTVVLATVARENTQVEEDFLPLTVQYIEKQYAAGRIPGGYI 73
Query: 72 NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAIT 131
R + G R+I R+LR + QI++ + + +
Sbjct: 74 KR------ETKPGDFETLTSRIIDRSLRPLFPKGYAYPTQIVVFVLSADPEIDLQVVGLN 127
Query: 132 GAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANF 191
A VAL+ +K V + G + +++ E +D
Sbjct: 128 AASVALY-------------LSDIPMKAPVCGVRVGYINDSFVINPTNSELQNSALDLYV 174
Query: 192 VMTDSGHIVEVQGSA---------ERATFSQDHFFAMLNLAKDRIA 228
++ ++ + FS+D ++ A I
Sbjct: 175 AGVKD-EMLMIEMRSLPNMNGENQNMNEFSEDKMVEAIDFASKAIL 219
>gi|8928245|sp|O34275|PNP_YEREN RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
Length = 706
Score = 146 bits (367), Expect = 3e-33, Method: Composition-based stats.
Identities = 44/242 (18%), Positives = 91/242 (37%), Gaps = 18/242 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR+++ +R + + V GS L G+T L TATL + + + +
Sbjct: 315 RIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQNIDELMGERTD 374
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + R+ G + R + +V+ + + + +
Sbjct: 375 SFLLHYNFPPYSVGETGMVGSPKRREIGHGRL----AKRGVLAVMPSPSEFPYTVRVVSE 430
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ GA +AL D ++ + V + + +
Sbjct: 431 ITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEDENFVVLSD---------I 481
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D + G I +Q + +++ LN AK ++ + +
Sbjct: 482 LGDEDHLGDMDFKVAGSRDG-ITALQMDIKIEGITREIMQVALNQAKGARLHILGVMEQA 540
Query: 238 IS 239
IS
Sbjct: 541 IS 542
Score = 93.4 bits (230), Expect = 2e-17, Method: Composition-based stats.
Identities = 37/232 (15%), Positives = 77/232 (33%), Gaps = 27/232 (11%)
Query: 14 ISLTRRV-SKYAEGSCLVKFGDTHLLTTATLEEKVPM----WIRNTKHGWITAEYGMLPR 68
+++ + ++ A + +V DT + T ++K + + T G +P
Sbjct: 16 VTIETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQSFFPLTVNYQERTYAAGRIPG 75
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
S R GR R+I R +R + S L Q+I +
Sbjct: 76 SFFRR------EGRPSEGETLTSRLIDRPIRPLFPDSFLNEVQVIATVVSVNPQINPDIV 129
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+ GA A G + A G + +++ E +D
Sbjct: 130 ALIGASAA-------------LSLSGIPFNGPIGAARVGFINDQYVLNPTTDELKESRLD 176
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
T +G ++ V+ A+ S+D + ++ +I+ +++
Sbjct: 177 LVVAGT-AGAVLMVESEADI--LSEDQMLGAVVFGHEQQQVVIENINALVAE 225
>gi|33864097|ref|NP_895657.1| ribonuclease PH [Prochlorococcus marinus str. MIT 9313]
gi|61216018|sp|Q7V4V8|RNPH_PROMM RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|33635681|emb|CAE22005.1| ribonuclease PH [Prochlorococcus marinus str. MIT 9313]
Length = 244
Score = 146 bits (367), Expect = 3e-33, Method: Composition-based stats.
Identities = 102/240 (42%), Positives = 148/240 (61%), Gaps = 4/240 (1%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R GR + MR + +T +A S +++ G T +L + +EE VP W + GW++A
Sbjct: 8 RADGRLADVMRPLQITWDPMGFALSSLIIRTGRTSVLCSVCVEEGVPRWRKGQGKGWLSA 67
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
EY +LP ST R + + GR+QEIQR+IGR+LR+V+D++ALG + IDCDVIQA
Sbjct: 68 EYRLLPGSTPQR--QNRELLKLSGRTQEIQRLIGRSLRAVIDMAALGETTLRIDCDVIQA 125
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
D GTRTA+ITGAW+AL + + Q + VAA+S G++ YP++DLDY E
Sbjct: 126 DAGTRTASITGAWIALKRGCDRLLEQ--GLLTHQPVIEQVAAVSVGLVESYPLLDLDYSE 183
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
DS DVD N VM +GH++E+QG+AE A FS++ +LNLA+ + L Q+ + E
Sbjct: 184 DSRADVDLNVVMGSNGHLLELQGTAEGAPFSRNQLNDLLNLAEPGLQHLQAFQRSALMQE 243
>gi|269958853|ref|YP_003328641.1| polynucleotide phosphorylase/polyadenylase [Anaplasma centrale str.
Israel]
gi|269848683|gb|ACZ49327.1| polynucleotide phosphorylase/polyadenylase [Anaplasma centrale str.
Israel]
Length = 802
Score = 146 bits (367), Expect = 3e-33, Method: Composition-based stats.
Identities = 50/243 (20%), Positives = 84/243 (34%), Gaps = 18/243 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +Q+R I + + + GS L GDT L L +E+V +
Sbjct: 320 RVDGRGFDQIRNIEIEVDLIPRSHGSALFTRGDTQALVITALGTPQDEQVVDGFDGDRRE 379
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y + G R+ G + RA+ V+ A I + +
Sbjct: 380 RFLLHYNFPSYAVGEAAALRPPGRREIGHGKL----AWRAIHPVLPTKADFPYTIRVVSE 435
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ ++DG + A + GA +AL D ++ + + +G A+ +
Sbjct: 436 ITESDGSSSMATVCGASLALMDTGVPLKSSVAGIAMGLIKEGDRYAVLSD---------I 486
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T G I +Q + D L A+D +I V
Sbjct: 487 IGDEDHLGDMDFKVAGTKEG-ITALQMDMKIRGIGFDIIEKSLQQARDGRLFIIGKMDKV 545
Query: 238 ISN 240
I
Sbjct: 546 IKE 548
Score = 89.5 bits (220), Expect = 3e-16, Method: Composition-based stats.
Identities = 39/229 (17%), Positives = 83/229 (36%), Gaps = 24/229 (10%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLE---EKVPMWIRNTKHGWITAEYGMLP 67
R + + +++ A+G+ +V +G T +L+T + E V + + G +P
Sbjct: 14 RLLVIESGKIARQADGAVVVDYGGTSVLSTVVSQKSKEPVDFLPLTVQFLAKSYAVGRIP 73
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R G+ R I R++ R++R + I+ + T
Sbjct: 74 GGFFKR------EGKPSDRETLISRLVDRSIRPLFPAGFCDEVVIVCNLLSYDQVSPPET 127
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
A+ GA AL ++ + + G I++ E + ++
Sbjct: 128 VALIGAAAALAISGIPFSTPIAGAKIGYIREE-----------GRYILNPSAEELARSEL 176
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
D + T S +V V+ +E + S+D L + ++ L ++
Sbjct: 177 DMFYSGTKS-SVVMVE--SEASELSEDEMLGALTFGHENCTQVLDLIEE 222
>gi|163787538|ref|ZP_02181985.1| putative polyribonucleotide nucleotidyltransferase
[Flavobacteriales bacterium ALC-1]
gi|159877426|gb|EDP71483.1| putative polyribonucleotide nucleotidyltransferase
[Flavobacteriales bacterium ALC-1]
Length = 751
Score = 146 bits (367), Expect = 3e-33, Method: Composition-based stats.
Identities = 46/244 (18%), Positives = 80/244 (32%), Gaps = 18/244 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
+RL GR+ ++R I GS + G+T L T TL +
Sbjct: 317 LRLDGRKTTEIRPIWCEVDYLPSTHGSSVFTRGETQALATVTLGTSRDANQIDMPSQEGE 376
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P TG S R+ G RAL+ +V + +
Sbjct: 377 ERFYLHYNFPPFCTGEARPIRGTSRREVGHGNL----AQRALKGMVPDD--CPYTVRVVS 430
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V++++G + A + +A+ D M + + + + D
Sbjct: 431 EVLESNGSSSMATVCAGTMAMMDAGVQMTKPVSGIAMGLISDADSG-------KYAVLSD 483
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T G I Q + S + L A+D +++ D
Sbjct: 484 ILGDEDHLGDMDFKVTGTADG-ITACQMDIKVKGLSYEILVNALQQARDGRLHILEKLTD 542
Query: 237 VISN 240
I+
Sbjct: 543 TIAQ 546
Score = 101 bits (251), Expect = 8e-20, Method: Composition-based stats.
Identities = 37/246 (15%), Positives = 72/246 (29%), Gaps = 34/246 (13%)
Query: 7 QENQMREISLTRR-VSKYAEGSCLVKFGDTHLLTTATL---EEKVPMWIRNTKHGWITAE 62
REIS+ ++K A GS +V+ G LL T ++ V + A
Sbjct: 11 DLGDGREISIETGKLAKQAHGSVVVQSGKCMLLCTVVSNYEQKDVNFLPLTVDYREKFAA 70
Query: 63 YGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQAD 122
G P R R R++ R LR + Q++I +
Sbjct: 71 AGRYPGGFFKR------EARPSDGEVLTMRLVDRVLRPLFPKDYHSETQVMIQLMSHDPE 124
Query: 123 GGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGED 182
+ + + + ++ G + G I++ + +
Sbjct: 125 VMPDA-------------MAGLAASAAIQLSDFPFECPISEARVGRINGEFIINPTFAQL 171
Query: 183 STIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ-------- 234
D+D + ++ V+ E S++ + A + I Q
Sbjct: 172 EESDIDMMI-GASADSVMMVE--GEMDEISEEEMADAIKFAHEHIKVQCAAQVKLAEAFG 228
Query: 235 KDVISN 240
K +
Sbjct: 229 KKAVRE 234
>gi|300788163|ref|YP_003768454.1| polyribonucleotide nucleotidyltransferase [Amycolatopsis
mediterranei U32]
gi|299797677|gb|ADJ48052.1| polyribonucleotide nucleotidyltransferase [Amycolatopsis
mediterranei U32]
Length = 753
Score = 146 bits (367), Expect = 3e-33, Method: Composition-based stats.
Identities = 49/242 (20%), Positives = 87/242 (35%), Gaps = 14/242 (5%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKH 56
+R+ GR +R +S V A GS L + G+T +L TL E+ + H
Sbjct: 345 IRMDGRGLTDIRSLSAEVAVIPRAHGSALFERGETQILGVTTLNMLRLEQQIDSLSPETH 404
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P STG + + R+ G RAL V+ I
Sbjct: 405 KRYMHHYNFPPFSTGETGRVGSPKRREIGHGML----AERALVPVLPKRDEFPYAIRQVS 460
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+ + ++G T ++ + +AL++ ++ + V G + D
Sbjct: 461 EALGSNGSTSMGSVCASTMALYNAGVPLKAPVAGIAMGLVSDE-----VDGETRYVALTD 515
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED+ D+D T I +Q + + A L AKD ++++ +
Sbjct: 516 ILGAEDALGDMDFKVAGTKD-IITALQLDTKLDGIPSEVLAAALKQAKDARLTILEVIAE 574
Query: 237 VI 238
I
Sbjct: 575 AI 576
Score = 69.5 bits (168), Expect = 3e-10, Method: Composition-based stats.
Identities = 36/244 (14%), Positives = 65/244 (26%), Gaps = 38/244 (15%)
Query: 12 REISLTRR-VSKYAEGSCLVKFG-DTHLLTTATLEEKVPMWIRNT----KHGWITAEYGM 65
R + ++K A G+ + +T LL+ T + G
Sbjct: 24 RTVRFETGRLAKQAAGAVVAYLDEETMLLSATTASKHPKDHFDFFPLTVDVEERMYAAGR 83
Query: 66 LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125
+P + R GR + R+I R LR Q++I + D
Sbjct: 84 IPGAFFRR------EGRPSTDAILTCRLIDRPLRPSFTDGLRNEIQVVITVQSLNPDDPY 137
Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185
AI A + G V + ++ + + +
Sbjct: 138 DVLAINAASASTQIAG-------------LPFSGPVGGVRVALVEDQWVAFPTWSQLEKA 184
Query: 186 DVDANFVM---TDSGHIVEVQGSAERATF----------SQDHFFAMLNLAKDRIADLIK 232
+ D I+ V+ T + A L +K I L +
Sbjct: 185 TFNMVVAGRIVGDDVAIMMVEAEGTEHTLDLIAAGGKAPDEAAVAAGLEASKPFIKVLCE 244
Query: 233 LQKD 236
Q+
Sbjct: 245 AQQQ 248
>gi|317046745|ref|YP_004114393.1| polyribonucleotide nucleotidyltransferase [Pantoea sp. At-9b]
gi|316948362|gb|ADU67837.1| polyribonucleotide nucleotidyltransferase [Pantoea sp. At-9b]
Length = 712
Score = 146 bits (367), Expect = 3e-33, Method: Composition-based stats.
Identities = 43/242 (17%), Positives = 90/242 (37%), Gaps = 18/242 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR+++ +R + + V GS L G+T L TATL + + + +
Sbjct: 315 RIDGREKDMIRGLDVRTGVLPRTHGSSLFTRGETQALVTATLGTARDAQSLDELMGERTD 374
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + R+ G + R + +V+ + + +
Sbjct: 375 SFLFHYNFPPYSVGETGMVGSPKRREIGHGRL----AKRGVLAVMPKQEDFPYTVRVVSE 430
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ GA +AL D ++ + V + + +
Sbjct: 431 ITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEDEKFVVLSD---------I 481
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D + G + +Q + +++ LN AK ++ + +
Sbjct: 482 LGDEDHLGDMDFKVAGSRDG-VTALQMDIKIEGITREIMQVALNQAKGARLHILSVMEQA 540
Query: 238 IS 239
IS
Sbjct: 541 IS 542
Score = 91.8 bits (226), Expect = 8e-17, Method: Composition-based stats.
Identities = 36/232 (15%), Positives = 75/232 (32%), Gaps = 27/232 (11%)
Query: 14 ISLTRRV-SKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----HGWITAEYGMLPR 68
++L + ++ A + +V DT + T ++K + T G +P
Sbjct: 16 VTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVNYQERTYAAGRIPG 75
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
S R GR I R+I R +R + + Q+I +
Sbjct: 76 SFFRR------EGRPSEGETLIARLIDRPVRPLFPEGFVNEVQVIATVVSVNPQVNPDIV 129
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+ GA A G + A G + +++ E +D
Sbjct: 130 AMIGASAA-------------LSLSGIPFNGPIGAARVGYINDQYVLNPTADEIKQSRLD 176
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
T + ++ V+ A+ ++D + D+ +I+ +++
Sbjct: 177 LVVAGTQN-AVLMVESEADI--LTEDQMLGAVVFGHDQQQVVIENINALVAE 225
>gi|16762047|ref|NP_457664.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Typhi str. CT18]
gi|29143536|ref|NP_806878.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Typhi str. Ty2]
gi|81512815|sp|Q8Z3I0|PNP_SALTI RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|25311835|pir||AD0901 polynucleotide phosphorylase [imported] - Salmonella enterica
subsp. enterica serovar Typhi (strain CT18)
gi|16504350|emb|CAD07802.1| polynucleotide phosphorylase [Salmonella enterica subsp. enterica
serovar Typhi]
gi|29139170|gb|AAO70738.1| polynucleotide phosphorylase [Salmonella enterica subsp. enterica
serovar Typhi str. Ty2]
Length = 711
Score = 146 bits (367), Expect = 3e-33, Method: Composition-based stats.
Identities = 45/242 (18%), Positives = 92/242 (38%), Gaps = 18/242 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR+++ +R + + V GS L G+T L TATL + +V + +
Sbjct: 315 RIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVLDELMGERTD 374
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + R+ G + R + +V+ + + +
Sbjct: 375 SFLFHYNFPPYSVGETGMVGSPKRREIGHGRL----AKRGVLAVMPDMDKFPYTVRVVSE 430
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ GA +AL D ++ + V +G + +
Sbjct: 431 ITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLSD---------I 481
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D + G I +Q + +++ LN AK ++ + +
Sbjct: 482 LGDEDHLGDMDFKVAGSRDG-ISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQA 540
Query: 238 IS 239
I+
Sbjct: 541 IN 542
Score = 94.5 bits (233), Expect = 1e-17, Method: Composition-based stats.
Identities = 38/232 (16%), Positives = 76/232 (32%), Gaps = 27/232 (11%)
Query: 14 ISLTRRV-SKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----HGWITAEYGMLPR 68
++L + ++ A + +V DT + T ++K + T G +P
Sbjct: 16 VTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVNYQERTYAAGRIPG 75
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
S R GR I R+I R +R + + Q+I +
Sbjct: 76 SFFRR------EGRPSEGETLIARLIDRPVRPLFPEGFVNEVQVIATVVSVNPQVNPDIV 129
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+ GA A G + A G + +++ E +D
Sbjct: 130 AMIGASAA-------------LSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLD 176
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
T++ ++ V+ AE S+D + ++ +I+ D++
Sbjct: 177 LVVAGTEA-AVLMVESEAEL--LSEDTMLGAVVFGHEQQQVVIQAINDLVKE 225
>gi|332086383|gb|EGI91530.1| polyribonucleotide nucleotidyltransferase [Shigella dysenteriae
155-74]
Length = 690
Score = 146 bits (367), Expect = 3e-33, Method: Composition-based stats.
Identities = 45/242 (18%), Positives = 92/242 (38%), Gaps = 18/242 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR+++ +R + + V GS L G+T L TATL + +V + +
Sbjct: 294 RIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVLDELMGERTD 353
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + R+ G + R + +V+ + + +
Sbjct: 354 TFLFHYNFPPYSVGETGMVGSPKRREIGHGRL----AKRGVLAVMPDMDKFPYTVRVVSE 409
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ GA +AL D ++ + V +G + +
Sbjct: 410 ITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLSD---------I 460
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D + G I +Q + +++ LN AK ++ + +
Sbjct: 461 LGDEDHLGDMDFKVAGSRDG-ISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQA 519
Query: 238 IS 239
I+
Sbjct: 520 IN 521
Score = 90.7 bits (223), Expect = 1e-16, Method: Composition-based stats.
Identities = 36/225 (16%), Positives = 73/225 (32%), Gaps = 26/225 (11%)
Query: 20 VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----HGWITAEYGMLPRSTGNRVK 75
+++ A + +V DT + T ++K + T G +P S R
Sbjct: 2 MARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVNYQERTYAAGRIPGSFFRR-- 59
Query: 76 REAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWV 135
GR I R+I R +R + + Q+I + A+ GA
Sbjct: 60 ----EGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVNPDIVAMIGASA 115
Query: 136 ALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTD 195
A G + A G + +++ E +D T+
Sbjct: 116 A-------------LSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVAGTE 162
Query: 196 SGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
+ ++ V+ AE S+D + ++ +I+ +++
Sbjct: 163 A-AVLMVESEAEL--LSEDQMLGAVVFGHEQQQVVIQNINELVKE 204
>gi|160887886|ref|ZP_02068889.1| hypothetical protein BACUNI_00289 [Bacteroides uniformis ATCC 8492]
gi|156862572|gb|EDO56003.1| hypothetical protein BACUNI_00289 [Bacteroides uniformis ATCC 8492]
Length = 714
Score = 146 bits (367), Expect = 3e-33, Method: Composition-based stats.
Identities = 48/243 (19%), Positives = 87/243 (35%), Gaps = 18/243 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHG 57
RL GR+ ++R I GS + G+T L+T T L+EK+ +
Sbjct: 319 RLDGRKTTEIRPIWCETSYLPGPHGSAIFTRGETQSLSTVTLGTKLDEKIIDDVLEHGKE 378
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P STG + V R+ G RAL+ + + + + D
Sbjct: 379 RFLLHYNFPPFSTGEAKAQRGVGRREIGHGHL----AWRALKGQIPANY--PYVVRVVSD 432
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+++++G + A + +AL D ++ + + + G + D+
Sbjct: 433 ILESNGSSSMATVCAGTLALMDAGVKIKKPVSGIAMGLIKN-------AGEDKYAVLSDI 485
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T G I Q + S + L AK+ ++ +
Sbjct: 486 LGDEDHLGDMDFKVTGTKDG-ITATQMDIKVDGLSYEILEKALLQAKEGREYILGKITEC 544
Query: 238 ISN 240
I+
Sbjct: 545 IAE 547
Score = 108 bits (269), Expect = 7e-22, Method: Composition-based stats.
Identities = 41/245 (16%), Positives = 80/245 (32%), Gaps = 34/245 (13%)
Query: 3 LSGRQENQMREISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----HG 57
GR I+L ++K A+GS +++ G+T LL T + +
Sbjct: 12 PDGRT------ITLETGKLAKQADGSVMLRMGNTMLLATVCAAKDAVPGTDFMPLQVEYK 65
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
+ +G P R GR R++ RALR + +
Sbjct: 66 EKFSAFGRFPGGFTKR------EGRASDYEILTCRLVDRALRPLFPDNFHAEVY------ 113
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ V + D L + + G ++ + + G +++
Sbjct: 114 -------VNIILFSADGVDMPDALAGLAASAALAVSDIPFNGPISEVRVARINGQFVINP 166
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
+ + D+D T +I+ V+ E S+ + A + I K Q +
Sbjct: 167 TFEQLEQADMDLMVGATYE-NIMMVE--GEMDEVSEQDLLEAMKAAHEAIKIQCKAQME- 222
Query: 238 ISNEV 242
++ EV
Sbjct: 223 LAEEV 227
>gi|149193793|ref|ZP_01870891.1| polynucleotide phosphorylase/polyadenylase [Caminibacter
mediatlanticus TB-2]
gi|149135746|gb|EDM24224.1| polynucleotide phosphorylase/polyadenylase [Caminibacter
mediatlanticus TB-2]
Length = 725
Score = 146 bits (367), Expect = 3e-33, Method: Composition-based stats.
Identities = 46/242 (19%), Positives = 91/242 (37%), Gaps = 14/242 (5%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT--LEEKVPMWIRNTKHGW 58
+R GR+ +++R IS+ V A GSCL G T L AT + ++ T
Sbjct: 341 IRADGRKLDEIRPISIETNVLPRAHGSCLFTRGQTQALAVATRGGDMDAQVYANLTDKEE 400
Query: 59 ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDV 118
++ + V G R + RA+ ++D + + ++
Sbjct: 401 KLEKFMLHYNFPAFAVGEAVRLGPPSRRELGHGNLAKRAIEPLLDPE--FDETVRVVSEI 458
Query: 119 IQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLD 178
++++G + A I + +AL + + + V +G AI ++
Sbjct: 459 LESNGSSSMATICASSIALKAAKVPLLKLAAGIAMGLVSEGEKYAILTDIM--------- 509
Query: 179 YGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
ED D+D T G I +Q + + D L A++ A +++ ++ +
Sbjct: 510 GLEDHDGDMDFKVAGTWDG-ITAMQMDIKLGGIALDILKEALYQAREARAFILEKMENAV 568
Query: 239 SN 240
N
Sbjct: 569 EN 570
Score = 58.7 bits (140), Expect = 8e-07, Method: Composition-based stats.
Identities = 33/239 (13%), Positives = 76/239 (31%), Gaps = 24/239 (10%)
Query: 20 VSKYAEGSCLVKFGDTHLLTTATL-EEKV---PMWIRNTKHGWITAEYGMLPRSTGNRVK 75
V++ A+ S + G+T +L T T ++V ++ G +P R
Sbjct: 21 VARQADSSIWWQEGNTVMLATLTYNPDEVIEEDFVPLVVQYVERAYAVGKIPAGFVKR-- 78
Query: 76 REAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWV 135
+ G R++ R+LR + + I I D + AA+ A
Sbjct: 79 ----EQKPGDFETLTARIVDRSLRPLFPKNFGYDTIITIMALSADEDSDLQVAAMNAAAA 134
Query: 136 ALHDCLQHMEDCSNKF-QLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMT 194
++ + + + G + + +D + ++
Sbjct: 135 CMYMSSLPFAKMVHGVRITRIDGEIIFNPTLSQLEKGDFNLFVTGTKDELLMIEYASQGQ 194
Query: 195 DSGHIVEVQ---GSA----------ERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
+ I+ V+ + S+D +L A+++I + + + + N
Sbjct: 195 EEVEIIPVEDIMLDGVPVENTIIKYKTNEISEDELIEILKKAQEKIKEGAETYESALKN 253
>gi|123440817|ref|YP_001004808.1| polynucleotide phosphorylase/polyadenylase [Yersinia enterocolitica
subsp. enterocolitica 8081]
gi|332160083|ref|YP_004296660.1| polynucleotide phosphorylase/polyadenylase [Yersinia enterocolitica
subsp. palearctica 105.5R(r)]
gi|187611341|sp|A1JIX3|PNP_YERE8 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|33332421|gb|AAQ11418.1| PNPase [Yersinia enterocolitica]
gi|122087778|emb|CAL10564.1| polyribonucleotide nucleotidyltransferase [Yersinia enterocolitica
subsp. enterocolitica 8081]
gi|318607357|emb|CBY28855.1| polyribonucleotide nucleotidyltransferase [Yersinia enterocolitica
subsp. palearctica Y11]
gi|325664313|gb|ADZ40957.1| polynucleotide phosphorylase/polyadenylase [Yersinia enterocolitica
subsp. palearctica 105.5R(r)]
gi|330862022|emb|CBX72189.1| polyribonucleotide nucleotidyltransferase [Yersinia enterocolitica
W22703]
Length = 706
Score = 146 bits (367), Expect = 3e-33, Method: Composition-based stats.
Identities = 44/242 (18%), Positives = 91/242 (37%), Gaps = 18/242 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR+++ +R + + V GS L G+T L TATL + + + +
Sbjct: 315 RIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQNIDELMGERTD 374
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + R+ G + R + +V+ + + + +
Sbjct: 375 SFLLHYNFPPYSVGETGMVGSPKRREIGHGRL----AKRGVLAVMPSPSEFPYTVRVVSE 430
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ GA +AL D ++ + V + + +
Sbjct: 431 ITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEDENFVVLSD---------I 481
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D + G I +Q + +++ LN AK ++ + +
Sbjct: 482 LGDEDHLGDMDFKVAGSRDG-ITALQMDIKIEGITREIMQVALNQAKGARLHILGVMEQA 540
Query: 238 IS 239
IS
Sbjct: 541 IS 542
Score = 93.4 bits (230), Expect = 2e-17, Method: Composition-based stats.
Identities = 37/232 (15%), Positives = 77/232 (33%), Gaps = 27/232 (11%)
Query: 14 ISLTRRV-SKYAEGSCLVKFGDTHLLTTATLEEKVPM----WIRNTKHGWITAEYGMLPR 68
+++ + ++ A + +V DT + T ++K + + T G +P
Sbjct: 16 VTIETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQSFFPLTVNYQERTYAAGRIPG 75
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
S R GR R+I R +R + S L Q+I +
Sbjct: 76 SFFRR------EGRPSEGETLTSRLIDRPIRPLFPDSFLNEVQVIATVVSVNPQINPDIV 129
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+ GA A G + A G + +++ E +D
Sbjct: 130 ALIGASAA-------------LSLSGIPFNGPIGAARVGFINDQYVLNPTTDELKESRLD 176
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
T +G ++ V+ A+ S+D + ++ +I+ +++
Sbjct: 177 LVVAGT-AGAVLMVESEADI--LSEDQMLGAVVFGHEQQQVVIENINALVAE 225
>gi|226356846|ref|YP_002786586.1| polynucleotide phosphorylase/polyadenylase [Deinococcus deserti
VCD115]
gi|257096684|sp|C1CXB5|PNP_DEIDV RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|226318836|gb|ACO46832.1| putative polyribonucleotide nucleotidyltransferase (Polynucleotide
phosphorylase) [Deinococcus deserti VCD115]
Length = 721
Score = 146 bits (367), Expect = 3e-33, Method: Composition-based stats.
Identities = 48/244 (19%), Positives = 91/244 (37%), Gaps = 18/244 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVP----MWIRNTKH 56
+R GR +R I + R A GS + G+T +L ATL + + +
Sbjct: 318 LRADGRNGRAVRPIWIEARPLPRAHGSAIFTRGETQVLGVATLGTERDEILVDDLTTEDN 377
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P STG + S R+ G RA+R+V+ I +
Sbjct: 378 DKFMLHYNFPPYSTGEVKRMGGQSRREIGHGHL----AKRAIRAVLPSFEEFPYVIRLVG 433
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V++++G + A + +AL D ++ + V++G + D
Sbjct: 434 EVLESNGSSSMATVCAGVLALMDAGVPIKAPVAGVAMGLVMEGDK---------YRVLTD 484
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED+ D+D T G + +Q + + L A++ ++ +
Sbjct: 485 ILGLEDALGDMDFKVCGTAEG-VTALQMDIKVGGITPQVMREALAQAREGRLHILGKMAE 543
Query: 237 VISN 240
V+S+
Sbjct: 544 VLSS 547
Score = 95.7 bits (236), Expect = 5e-18, Method: Composition-based stats.
Identities = 48/237 (20%), Positives = 82/237 (34%), Gaps = 29/237 (12%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEK---VPMWIRNTKHGWITAEYGMLP 67
RE+S+ ++K GS +++GDT LL TA E+ + + G +P
Sbjct: 13 RELSIETGRLAKLVSGSVTLRYGDTMLLVTAQAREEKSPLDFLPLTVEFEERHYAVGKIP 72
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
S R GR G ++ R+ R LR + Q+II
Sbjct: 73 GSFHRR------EGRPGEKAILSARITDRQLRPLFPKGYRHETQVIITVLSADQQNAPDV 126
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
GA A G A + G + G IV+ + + +
Sbjct: 127 LGPIGASAA-------------LSISDIPWGGPTACVRVGQVDGQFIVNPTADQLTRSRM 173
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAK---DRIADLIKLQKDVISNE 241
D T ++ V+ A+ T S++ + + A + DLI+ + + E
Sbjct: 174 DLVVAGTRD-AVMMVEAGAQ--TVSEEDLVSAIEFAHAEMQGVIDLIERMRAEVGQE 227
>gi|258404622|ref|YP_003197364.1| polynucleotide phosphorylase/polyadenylase [Desulfohalobium
retbaense DSM 5692]
gi|257796849|gb|ACV67786.1| polyribonucleotide nucleotidyltransferase [Desulfohalobium
retbaense DSM 5692]
Length = 742
Score = 146 bits (367), Expect = 3e-33, Method: Composition-based stats.
Identities = 42/241 (17%), Positives = 84/241 (34%), Gaps = 18/241 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +R++++ GS + G+T +L+ ATL +E+ + +
Sbjct: 322 RIDGRDLTTVRDLNIETSSLPRTHGSAIFARGETKVLSVATLGSSRDEQRIEMLDGELNK 381
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P G + R+ G RAL V+ + + +
Sbjct: 382 RFMLHYNFPPYCVGEVKMMRGPARREIGHGAL----AERALTPVLPTEDEFPFTMRVVSE 437
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
V++++G + A + G ++L D + + + + + +
Sbjct: 438 VMESNGSSSMATVCGTSLSLMDAGVPVSAPVAGIAMGLIKEEDEFLVLTD---------I 488
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T G I +Q ++ A + LN A D ++ V
Sbjct: 489 LGDEDHLGDMDFKVAGTAEG-ITAIQMDSKIAGIPPEVLKRALNQAMDARLHILDNMNTV 547
Query: 238 I 238
+
Sbjct: 548 L 548
Score = 99.1 bits (245), Expect = 5e-19, Method: Composition-based stats.
Identities = 40/234 (17%), Positives = 82/234 (35%), Gaps = 26/234 (11%)
Query: 13 EISLTRR-VSKYAEGSCLVKFGDTHLLTTAT---LEEKVPMWIRNTKHGWITAEYGMLPR 68
+I + ++ A G+ V+ G T +L TA + + + ++ G +P
Sbjct: 20 DILIETGRLANQANGAVWVQSGGTVVLVTAVTQPVTRDIDFMPLVVDYQEMSYASGRIPG 79
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
+ R GR R + R+I R +R + QII +
Sbjct: 80 NYFRR-----EIGRPSERETLVSRLIDRPIRPLFPAGFRDEVQIIATVLSAAPEVNPDVL 134
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+TGA A+H G + I G + G +++ E D++
Sbjct: 135 ALTGASAAMH-------------ISDIPFDGPIGGIRVGQVDGEFVLNPSQNELENSDLN 181
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNEV 242
+ + V+G +D + +++ L++LQ + + ++
Sbjct: 182 LVLAGSRD-AVTMVEGGG--NFVPEDRMAEAITWGHEQVQALLQLQDE-LREKI 231
>gi|332886043|gb|EGK06287.1| polyribonucleotide nucleotidyltransferase [Dysgonomonas mossii DSM
22836]
Length = 723
Score = 146 bits (367), Expect = 3e-33, Method: Composition-based stats.
Identities = 50/243 (20%), Positives = 88/243 (36%), Gaps = 18/243 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHG 57
RL GR ++R I A GS + G+T LTT T L+EK+ + N
Sbjct: 319 RLDGRTTTEIRPIWSEVDYLPGAHGSAVFTRGETQSLTTVTLGTKLDEKIIDDVLNNGKE 378
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P STG+ + V R+ G RAL+ ++ I + D
Sbjct: 379 RFLLHYNFPPFSTGDARPQRGVGRREIGHGNL----AHRALKPMIPSDY--PYVIRVVSD 432
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+++++G + A + +AL D ++ + + + + D+
Sbjct: 433 ILESNGSSSMATVCAGTLALMDAGVKIKKPVTGIAMGLISE-------KKGTNFAVLSDI 485
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T G I Q + S + LN A++ ++ +
Sbjct: 486 LGDEDHLGDMDFKVCGTKDG-ITATQMDIKVDGLSYEILEKALNQAREGRLHIMGKILET 544
Query: 238 ISN 240
+
Sbjct: 545 LPE 547
Score = 111 bits (278), Expect = 6e-23, Method: Composition-based stats.
Identities = 38/235 (16%), Positives = 76/235 (32%), Gaps = 27/235 (11%)
Query: 7 QENQMREISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----HGWITA 61
R I++ ++K A+GS +V+ G+T LL T + + + A
Sbjct: 10 DLGDGRTITIETGKLAKQADGSVMVRMGNTMLLATVCAAKDANPGVDFMPLQVEYKEKFA 69
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
YG P R GR + R++ RALR + + +
Sbjct: 70 AYGRFPGGFQRR------EGRASDYEILVCRLVDRALRPLFPDDYHAEVFVNVTLFSSDG 123
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
+ L + + G ++ + + G I++ + +
Sbjct: 124 EDMPDA-------------LAGLAASAALAVSDIPFNGPISEVRVARVDGQFILNPTFSQ 170
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ D+D T +I+ V+ E S+ + A + I + Q +
Sbjct: 171 LAKADMDIMVGATID-NIMMVE--GEMKEVSEVEMLEAIKFAHEAIKVQCQAQIE 222
>gi|237753403|ref|ZP_04583883.1| polynucleotide phosphorylase/polyadenylase [Helicobacter
winghamensis ATCC BAA-430]
gi|229375670|gb|EEO25761.1| polynucleotide phosphorylase/polyadenylase [Helicobacter
winghamensis ATCC BAA-430]
Length = 736
Score = 146 bits (367), Expect = 3e-33, Method: Composition-based stats.
Identities = 47/248 (18%), Positives = 87/248 (35%), Gaps = 23/248 (9%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW------IRNT 54
+R GR ++R IS+ + A S L G T L TL ++ + T
Sbjct: 346 IRADGRGLKEVRPISIETNILPKAHSSVLFTRGQTQALVVCTLGGEMDAQSYELLTDKGT 405
Query: 55 KHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIII 114
Y P S G + A R+ G RAL V + I +
Sbjct: 406 SKERFMVHYNFPPFSVGEAIPIGATGRRELGHGNL----AKRALECSVINGDQ--KTIRL 459
Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPI 174
++++++G + A++ G +AL + V +G A+ ++
Sbjct: 460 VSEILESNGSSSMASVCGGSLALAAADIECTSLIAGVAMGLVCEGEKYAVLTDIM----- 514
Query: 175 VDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
ED D+D + SG I +Q + S + L AK+ ++++
Sbjct: 515 ----GLEDHDGDMDFKVAGSKSG-ITALQMDIKLGGLSTEILECALLQAKEARFHILEIM 569
Query: 235 KDVISNEV 242
+ ++
Sbjct: 570 ESA-KEKI 576
Score = 57.5 bits (137), Expect = 2e-06, Method: Composition-based stats.
Identities = 34/254 (13%), Positives = 65/254 (25%), Gaps = 47/254 (18%)
Query: 20 VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGNRVKREAV 79
V+K A GS K G+ LL T ++ + E
Sbjct: 20 VAKQASGSVYYKSGNNVLLATLAVDCDCIVEEDFLPLTVQYIEKAYAAGKFP--GGYIKR 77
Query: 80 SGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVALHD 139
+ G R++ R+LR + QI I ++ A
Sbjct: 78 EAKPGDFETLTARIVDRSLRPLFPKDYCYPTQITIMV-------------LSADNDADLQ 124
Query: 140 CLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHI 199
L + + L V + G + +V+ E +D + +
Sbjct: 125 LLALNAASAALYTSEIPLNFAVNGVRIGRIGNEFVVNPSLKEMEQSTLDLFVSGVNED-L 183
Query: 200 VEVQGSAERA---------------------------TFSQDHFFAMLNLAKDRIADLIK 232
+ ++ ++ L +AK I+ K
Sbjct: 184 LMIEMRTFGGVDIQTPSNPLSLVTTLMEDKKAEFSANELTEIELMQALEIAKTHISKKSK 243
Query: 233 LQKD----VISNEV 242
L ++ I +
Sbjct: 244 LVEEHFKACIKEPL 257
>gi|87303144|ref|ZP_01085942.1| polyribonucleotide nucleotidyltransferase [Synechococcus sp. WH
5701]
gi|87282311|gb|EAQ74271.1| polyribonucleotide nucleotidyltransferase [Synechococcus sp. WH
5701]
Length = 678
Score = 146 bits (367), Expect = 3e-33, Method: Composition-based stats.
Identities = 45/244 (18%), Positives = 89/244 (36%), Gaps = 19/244 (7%)
Query: 2 RLSGRQENQMREISLTRRVSK-YAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
R+ GR +++R IS V GS L + G T +L+TATL + + +
Sbjct: 292 RVDGRNLDEVRPISAAVGVLPKRVHGSGLFQRGLTQVLSTATLGTPSDAQEMDDLNPMGE 351
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P S G + R+ G RA+ V+ + +
Sbjct: 352 KTYLHHYNFPPYSVGETRPMRSPGRREVGHGAL----AERAIVPVLPPKESFPYVLRVVS 407
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+ + ++G T ++ G+ +AL D ++ + + + +G + D
Sbjct: 408 ECLSSNGSTSMGSVCGSTLALMDAGVPLKAPVSGAAMGLIKEGDEV---------RILTD 458
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T+ G I +Q + + + +N A+ +++ +
Sbjct: 459 IQGIEDFLGDMDFKVAGTEKG-ITALQMDMKISGLAVSTIAEAVNQARPARLHILEKMLE 517
Query: 237 VISN 240
I
Sbjct: 518 AIGK 521
Score = 89.9 bits (221), Expect = 3e-16, Method: Composition-based stats.
Identities = 46/215 (21%), Positives = 82/215 (38%), Gaps = 25/215 (11%)
Query: 29 LVKFGDTHLLTTAT---LEEKVPMWIRNTKHGWITAEYGMLPRSTGNRVKREAVSGRQGG 85
LV+ GDT +L TAT E + + G +P S R GR
Sbjct: 2 LVECGDTAVLVTATRSKGREGIDFLPLTCDYEERLYAAGRIPGSFFRR------EGRPPE 55
Query: 86 RSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHME 145
R+ R+I R LR + Q++ C + A+TGA +A
Sbjct: 56 RAILTTRLIDRPLRPLFPSWLRDDLQVVATCLSLDERVPPDVLAVTGASIATLLAKI--- 112
Query: 146 DCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGS 205
G +AA+ G+L +++ Y E ++D T +G +V V+
Sbjct: 113 ----------PFSGPMAAVRVGLLGDDFVLNPSYREIERSELDLVVAGTPTG-VVMVEAG 161
Query: 206 AERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
A + + ++ + + +LIK Q+ ++++
Sbjct: 162 ANQ--LPEQDVIEAIDFGYEAVGELIKAQQKLLAD 194
>gi|238787597|ref|ZP_04631395.1| Polyribonucleotide nucleotidyltransferase [Yersinia frederiksenii
ATCC 33641]
gi|238724384|gb|EEQ16026.1| Polyribonucleotide nucleotidyltransferase [Yersinia frederiksenii
ATCC 33641]
Length = 706
Score = 146 bits (367), Expect = 3e-33, Method: Composition-based stats.
Identities = 44/242 (18%), Positives = 91/242 (37%), Gaps = 18/242 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR+++ +R + + V GS L G+T L TATL + + + +
Sbjct: 315 RIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQNIDELMGERTD 374
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + R+ G + R + +V+ + + + +
Sbjct: 375 SFLLHYNFPPYSVGETGMVGSPKRREIGHGRL----AKRGVMAVMPSPSEFPYTVRVVSE 430
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ GA +AL D ++ + V + + +
Sbjct: 431 ITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEDENFVVLSD---------I 481
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D + G I +Q + +++ LN AK ++ + +
Sbjct: 482 LGDEDHLGDMDFKVAGSRDG-ITALQMDIKIEGITREIMQVALNQAKGARLHILGVMEQA 540
Query: 238 IS 239
IS
Sbjct: 541 IS 542
Score = 91.1 bits (224), Expect = 1e-16, Method: Composition-based stats.
Identities = 36/232 (15%), Positives = 76/232 (32%), Gaps = 27/232 (11%)
Query: 14 ISLTRRV-SKYAEGSCLVKFGDTHLLTTATLEEKVPM----WIRNTKHGWITAEYGMLPR 68
+++ + ++ A + +V DT + T ++K + + T G +P
Sbjct: 16 VTIETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQSFFPLTVNYQERTYAAGRIPG 75
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
S R GR R+I R +R + S L Q+I +
Sbjct: 76 SFFRR------EGRPSEGETLTSRLIDRPIRPLFPDSFLNEVQVIATVVSVNPQINPDIV 129
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+ GA A G + A G + +++ E +D
Sbjct: 130 ALIGASAA-------------LSLSGIPFNGPIGAARVGFINDQYVLNPTTDELKESRLD 176
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
T + ++ V+ A+ S+D + ++ +I+ +++
Sbjct: 177 LVVAGTAA-AVLMVESEADI--LSEDQMLGAVVFGHEQQQVVIENINALVAE 225
>gi|15614970|ref|NP_243273.1| polynucleotide phosphorylase/polyadenylase [Bacillus halodurans
C-125]
gi|81786500|sp|Q9KA83|PNP_BACHD RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|10175027|dbj|BAB06126.1| polynucleotide phosphorylase [Bacillus halodurans C-125]
Length = 704
Score = 146 bits (367), Expect = 4e-33, Method: Composition-based stats.
Identities = 41/244 (16%), Positives = 84/244 (34%), Gaps = 18/244 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56
+R GR+ +++R +S + GS L G T L+ T + ++ + +
Sbjct: 313 IRPDGREIDEIRPLSSQVGILPRTHGSGLFTRGQTQALSICTLGALGDVQILDGLGIEES 372
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y S G R+ G RAL V+ I +
Sbjct: 373 KRFMHHYNFPQFSVGETGPIRGPGRREIGHGALG----ERALEPVIPSEQDFPYTIRLVS 428
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V++++G T A+I + +A+ D ++ + V + ++
Sbjct: 429 EVLESNGSTSQASICASTLAMMDAGVPIKAPVAGIAMGLVKQDEHVSVLTD--------- 479
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED+ D+D T G + +Q + + + L A+ ++ +
Sbjct: 480 IQGMEDALGDMDFKVAGTRKG-VTALQMDIKISGIDRAILEQALEQARKGRMIILDNMLE 538
Query: 237 VISN 240
IS
Sbjct: 539 AISE 542
Score = 118 bits (294), Expect = 1e-24, Method: Composition-based stats.
Identities = 45/233 (19%), Positives = 90/233 (38%), Gaps = 26/233 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATL---EEKVPMWIRNTKHGWITAEYGMLP 67
R++++ ++K A G+ LV++GDT +L+TAT + +P + + G +P
Sbjct: 15 RKLTVETGQLAKQANGAVLVRYGDTAVLSTATASKEPKDLPFFPLTVNYEERLYAAGKIP 74
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R GR ++ R+I R +R + Q+I + D +
Sbjct: 75 GGFIKR------EGRPSEKAILASRLIDRPIRPLFPEGFRNEVQVISIVMSVDQDCSSEM 128
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
AA+ G+ +A +G +A ++ G + G +++ + D+
Sbjct: 129 AAMVGSSLA-------------LSISDIPFEGPIAGVTVGRIDGQFVINPTQDQLEKSDI 175
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
T I V+ AE +D + + I LI+ Q+ + +
Sbjct: 176 HLVVAGTKD-AINMVEAGAEEVP--EDVMLEAIMFGHNEIKRLIEFQEKIAAE 225
>gi|303251556|ref|ZP_07337730.1| polynucleotide phosphorylase/polyadenylase [Actinobacillus
pleuropneumoniae serovar 6 str. Femo]
gi|307252131|ref|ZP_07534030.1| Polyribonucleotide nucleotidyltransferase [Actinobacillus
pleuropneumoniae serovar 6 str. Femo]
gi|302649554|gb|EFL79736.1| polynucleotide phosphorylase/polyadenylase [Actinobacillus
pleuropneumoniae serovar 6 str. Femo]
gi|306860431|gb|EFM92445.1| Polyribonucleotide nucleotidyltransferase [Actinobacillus
pleuropneumoniae serovar 6 str. Femo]
Length = 715
Score = 146 bits (367), Expect = 4e-33, Method: Composition-based stats.
Identities = 42/241 (17%), Positives = 88/241 (36%), Gaps = 18/241 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR + +R + + V GS + G+T L ATL + ++ + K
Sbjct: 314 RIDGRTVDTVRALDICTGVLPRTHGSAIFTRGETQALAVATLGTERDAQIIDELTGEKSD 373
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + + R+ G + R + +V+ + + + +
Sbjct: 374 RFLFHYNFPPYSVGETGRIGSPKRREIGHGRL----AKRGVLAVMPTAEEFPYVVRVVSE 429
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ GA +AL D ++ + V + + +
Sbjct: 430 ITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEEEKFVVLSD---------I 480
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T G + +Q + + + LN AK ++ + +
Sbjct: 481 LGDEDHLGDMDFKVAGTREG-VTALQMDIKIEGITPEIMQIALNQAKGARMHILSVMEQA 539
Query: 238 I 238
I
Sbjct: 540 I 540
Score = 91.1 bits (224), Expect = 1e-16, Method: Composition-based stats.
Identities = 34/232 (14%), Positives = 73/232 (31%), Gaps = 27/232 (11%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT----KHGWITAEYGMLPR 68
++L +++ A + + DT + T +++V + T G +P
Sbjct: 15 VTLETGAIARQATAAVMASMDDTTVFVTVVAKKEVKEGQDFFPLTVDYQERTYAAGRIPG 74
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
R GR I R+I R +R + Q+I +
Sbjct: 75 GFFKR------EGRPSEGETLIARLIDRPVRPLFPEGFFNEIQVIATVVSVNPQISPDLV 128
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+ GA A G + A G + +++ E +D
Sbjct: 129 AMIGASAA-------------LSLSGVPFNGPIGAARVGFINDQFVLNPTTSEQKISRLD 175
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
T + ++ V+ A+ S++ + + + +I+ K+ +
Sbjct: 176 LVVAGT-NKAVLMVESEADI--LSEEQMLSAVVFGHQQQQVVIENIKEFVKE 224
>gi|298377863|ref|ZP_06987813.1| polyribonucleotide nucleotidyltransferase [Bacteroides sp. 3_1_19]
gi|301312258|ref|ZP_07218175.1| polyribonucleotide nucleotidyltransferase [Bacteroides sp. 20_3]
gi|298265309|gb|EFI06972.1| polyribonucleotide nucleotidyltransferase [Bacteroides sp. 3_1_19]
gi|300829680|gb|EFK60333.1| polyribonucleotide nucleotidyltransferase [Bacteroides sp. 20_3]
Length = 746
Score = 146 bits (367), Expect = 4e-33, Method: Composition-based stats.
Identities = 49/240 (20%), Positives = 87/240 (36%), Gaps = 18/240 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
RL GR+ ++R I + GS + G+T L+T TL +EK+ + N +
Sbjct: 319 RLDGRKTTEIRPIWIETDCLPGPHGSAIFTRGETQSLSTVTLGTKSDEKMIDDVLNHGYE 378
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P STG V R+ G RAL+ ++ + ++I D
Sbjct: 379 RFLLHYNFPPFSTGEAKATRGVGRREIGHGNL----AHRALKRMIPDNYPYVVRVISDIL 434
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+++G + A + +AL D M+ + + + + + D+
Sbjct: 435 --ESNGSSSMATVCAGTLALRDAGVPMKKPVSGIAMGLISE-------NKGTNYAILSDI 485
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T G I Q + S + L AK+ ++ +
Sbjct: 486 LGDEDHLGDMDFKVTGTKDG-ITATQMDIKVDGLSYEILENALAQAKEGRMHILGKILEA 544
Score = 97.6 bits (241), Expect = 1e-18, Method: Composition-based stats.
Identities = 35/230 (15%), Positives = 66/230 (28%), Gaps = 19/230 (8%)
Query: 8 ENQMREISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGML 66
R I++ ++K A+G+ V+ +T LL T + + E
Sbjct: 11 LGDGRTITIETGKLAKQADGAVTVRMNNTVLLATVCAAKDANPGVDFMPLQVEYKEKYSA 70
Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
G+ R++ RALR + +
Sbjct: 71 FGRFP--GGFTKREGKASDYEILTSRLVDRALRPLFPDNYHAEVY-------------VN 115
Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
+ L D L + + G ++ + G IV+ E D
Sbjct: 116 IILFSADGEDLPDALAGLAASAALAVSDIPFNGPISEVRVARTDGKYIVNPTSAELEKAD 175
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+D T +I+ V+ E + + +A + I K Q +
Sbjct: 176 IDIMVAATID-NIMMVE--GEMNEVQESEMLEAIKVAHEAIKVQCKAQLE 222
>gi|218706786|ref|YP_002414305.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli
UMN026]
gi|300897928|ref|ZP_07116307.1| polyribonucleotide nucleotidyltransferase [Escherichia coli MS
198-1]
gi|301022018|ref|ZP_07185961.1| polyribonucleotide nucleotidyltransferase [Escherichia coli MS
69-1]
gi|331674702|ref|ZP_08375461.1| polyribonucleotide nucleotidyltransferase [Escherichia coli TA280]
gi|218433883|emb|CAR14800.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli
UMN026]
gi|284923188|emb|CBG36282.1| polyribonucleotide nucleotidyltransferase [Escherichia coli 042]
gi|300358358|gb|EFJ74228.1| polyribonucleotide nucleotidyltransferase [Escherichia coli MS
198-1]
gi|300397733|gb|EFJ81271.1| polyribonucleotide nucleotidyltransferase [Escherichia coli MS
69-1]
gi|331068141|gb|EGI39537.1| polyribonucleotide nucleotidyltransferase [Escherichia coli TA280]
Length = 734
Score = 146 bits (367), Expect = 4e-33, Method: Composition-based stats.
Identities = 45/242 (18%), Positives = 92/242 (38%), Gaps = 18/242 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR+++ +R + + V GS L G+T L TATL + +V + +
Sbjct: 338 RIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVLDELMGERTD 397
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + R+ G + R + +V+ + + +
Sbjct: 398 TFLFHYNFPPYSVGETGMVGSPKRREIGHGRL----AKRGVLAVMPDMDKFPYTVRVVSE 453
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ GA +AL D ++ + V +G + +
Sbjct: 454 ITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLSD---------I 504
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D + G I +Q + +++ LN AK ++ + +
Sbjct: 505 LGDEDHLGDMDFKVAGSRDG-ISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQA 563
Query: 238 IS 239
I+
Sbjct: 564 IN 565
Score = 95.7 bits (236), Expect = 5e-18, Method: Composition-based stats.
Identities = 37/232 (15%), Positives = 76/232 (32%), Gaps = 27/232 (11%)
Query: 14 ISLTRRV-SKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----HGWITAEYGMLPR 68
++L + ++ A + +V DT + T ++K + T G +P
Sbjct: 39 VTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVNYQERTYAAGRIPG 98
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
S R GR I R+I R +R + + Q+I +
Sbjct: 99 SFFRR------EGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVNPDIV 152
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+ GA A G + A G + +++ E +D
Sbjct: 153 AMIGASAA-------------LSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLD 199
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
T++ ++ V+ AE S+D + ++ +I+ +++
Sbjct: 200 LVVAGTEA-AVLMVESEAEL--LSEDQMLGAVVFGHEQQQVVIQNINELVKE 248
>gi|218555736|ref|YP_002388649.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli IAI1]
gi|218362504|emb|CAR00128.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli IAI1]
Length = 734
Score = 146 bits (367), Expect = 4e-33, Method: Composition-based stats.
Identities = 45/242 (18%), Positives = 92/242 (38%), Gaps = 18/242 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR+++ +R + + V GS L G+T L TATL + +V + +
Sbjct: 338 RIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVLDELMGERTD 397
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + R+ G + R + +V+ + + +
Sbjct: 398 TFLFHYNFPPYSVGETGMVGSPKRREIGHGRL----AKRGVLAVMPDMDKFPYTVRVVSE 453
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ GA +AL D ++ + V +G + +
Sbjct: 454 ITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLSD---------I 504
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D + G I +Q + +++ LN AK ++ + +
Sbjct: 505 LGDEDHLGDMDFKVAGSRDG-ISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQA 563
Query: 238 IS 239
I+
Sbjct: 564 IN 565
Score = 95.7 bits (236), Expect = 5e-18, Method: Composition-based stats.
Identities = 37/232 (15%), Positives = 76/232 (32%), Gaps = 27/232 (11%)
Query: 14 ISLTRRV-SKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----HGWITAEYGMLPR 68
++L + ++ A + +V DT + T ++K + T G +P
Sbjct: 39 VTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVNYQERTYAAGRIPG 98
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
S R GR I R+I R +R + + Q+I +
Sbjct: 99 SFFRR------EGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVNPDIV 152
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+ GA A G + A G + +++ E +D
Sbjct: 153 AMIGASAA-------------LSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLD 199
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
T++ ++ V+ AE S+D + ++ +I+ +++
Sbjct: 200 LVVAGTEA-AVLMVESEAEL--LSEDQMLGAVVFGHEQQQVVIQNINELVKE 248
>gi|313623917|gb|EFR94027.1| polyribonucleotide nucleotidyltransferase [Listeria innocua FSL
J1-023]
Length = 723
Score = 146 bits (367), Expect = 4e-33, Method: Composition-based stats.
Identities = 51/244 (20%), Positives = 89/244 (36%), Gaps = 18/244 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
+R GR+ N++R +S + GS L G T L+ TL E ++ + ++
Sbjct: 316 IRPDGRKVNEIRPLSSEVGMLPRVHGSGLFTRGQTQALSVCTLAPLREHQIIDGLGTEEY 375
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y S G R A R+ G RAL+ V+ I +
Sbjct: 376 KRFMHHYNFPQFSVGETGPRRAPGRREIGHGALG----ERALQYVIPSEEEFPYTIRLVS 431
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V++++G + A+I G+ +A+ D ++ + V G I
Sbjct: 432 EVLESNGSSSQASICGSTLAMLDAGVPIKAPVAGIAMGLVKLGDDYTILSD--------- 482
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T G I +Q + S+ L AK+ +++
Sbjct: 483 IQGMEDHFGDMDFKVAGTKDG-ITALQMDIKIDGLSRQIXXXXLTQAKEGRLHILEHLTS 541
Query: 237 VISN 240
IS
Sbjct: 542 TISE 545
Score = 111 bits (276), Expect = 1e-22, Method: Composition-based stats.
Identities = 44/230 (19%), Positives = 83/230 (36%), Gaps = 26/230 (11%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKV---PMWIRNTKHGWITAEYGMLPRS 69
+S+ ++K A G+ L+++GDT +LT A +K + + G +P
Sbjct: 16 LSVEVGQLAKQASGAALIRYGDTVVLTAAVGSKKPRPGDFFPLTVNYEEKMYSVGKVPGG 75
Query: 70 TGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAA 129
R GR R+ R+I R +R + QI + D AA
Sbjct: 76 FLKR------EGRPSDRATLTARLIDRPIRPLFAEGFRNEVQITSTVFSVDQDCSPEMAA 129
Query: 130 ITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDA 189
+ G+ VA +G +A + G + G +++ + D+
Sbjct: 130 MLGSSVA-------------LVISDIPFEGPIAGVDVGRIDGKYVINPTIEQAEKSDISL 176
Query: 190 NFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
T I V+ A+ S++ + + I L + Q+ +I+
Sbjct: 177 TVAGTYD-AINMVEAGAKE--VSEEAMLEAIMFGHEEIKRLCEFQQQIIA 223
>gi|226951862|ref|ZP_03822326.1| polynucleotide phosphorylase/polyadenylase [Acinetobacter sp. ATCC
27244]
gi|294649119|ref|ZP_06726561.1| polyribonucleotide nucleotidyltransferase [Acinetobacter
haemolyticus ATCC 19194]
gi|226837402|gb|EEH69785.1| polynucleotide phosphorylase/polyadenylase [Acinetobacter sp. ATCC
27244]
gi|292825002|gb|EFF83763.1| polyribonucleotide nucleotidyltransferase [Acinetobacter
haemolyticus ATCC 19194]
Length = 714
Score = 146 bits (367), Expect = 4e-33, Method: Composition-based stats.
Identities = 49/239 (20%), Positives = 88/239 (36%), Gaps = 10/239 (4%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R+ GR +R I + V A GS L G+T L T TL + +T G T
Sbjct: 334 RIDGRDTKTVRGIDVQVGVLDRAHGSALFTRGETQALVTTTLGNTRDALMVDTLAGTKTD 393
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
+ + V R R+ R +++V+ + I I D+ ++
Sbjct: 394 NFMLHYNFPAYSVGETGRESGPKRREIGHGRLARRGVQAVLPAADRFPYVIRIVSDITES 453
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
+G + A++ GA ++L D ++ + V +G A+ + E
Sbjct: 454 NGSSSMASVCGASLSLMDAGVPLKAPVAGIAMGLVKEGERFAVLSD---------ILGDE 504
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
D D+D + +G I +Q + +++ LN A ++ VIS
Sbjct: 505 DHLGDMDFKVAGSANG-ITALQMDIKIEGITEEIMEVALNQAFAGRMHILNEMNKVISR 562
Score = 89.5 bits (220), Expect = 4e-16, Method: Composition-based stats.
Identities = 39/228 (17%), Positives = 74/228 (32%), Gaps = 28/228 (12%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----HGWITAEYGMLPR 68
+ L V++ A + LV G +L + K + G +P
Sbjct: 35 VVLETGRVARQAN-TVLVTMGGVTVLVAVVAQPKAKAGQDFFPLTVNYQEKQYAAGRIPG 93
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
G R GR I R+I R +R + Q+ A
Sbjct: 94 GYGKR------EGRASEAETLISRLIDRPIRPLFPEGYFNEIQVTATVVSSDKTMDADIA 147
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+ G AL +G + G++ G +++ ++ + + D+D
Sbjct: 148 AMLGTSAALSIAGT-------------PFRGPIGGARVGLINGEYVLNPNFEQLAQSDLD 194
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
T+S ++ V+ A+ S+D + D + I+ K+
Sbjct: 195 LVVAGTES-AVLMVESEAKE--LSEDQMLGAVLFGHDEMQIAIQAIKE 239
>gi|255522701|ref|ZP_05389938.1| ribonuclease PH [Listeria monocytogenes FSL J1-175]
Length = 229
Score = 146 bits (367), Expect = 4e-33, Method: Composition-based stats.
Identities = 101/223 (45%), Positives = 145/223 (65%), Gaps = 1/223 (0%)
Query: 20 VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGNRVKREAV 79
+ EGS L+ G+T ++ +A++E KVP ++R GWI+AEY MLPR+T R RE+
Sbjct: 1 YLMHPEGSVLIASGNTKVICSASVETKVPPFMRGEGRGWISAEYSMLPRATNTRNIRESS 60
Query: 80 SGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVALHD 139
G+ GR+ EIQR+IGRALR+VVDL ALG R I +DCDVIQADGGTRTA+ITGA++A+
Sbjct: 61 KGKVTGRTMEIQRLIGRALRAVVDLDALGERTIWLDCDVIQADGGTRTASITGAFIAMVM 120
Query: 140 CLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHI 199
+ +++ F V A + G ++DL+Y EDS VD N +MT SG
Sbjct: 121 AIAKLDEAVP-FAKFPVKDFLAATSVGVLEEGGTVLDLNYVEDSAAQVDMNIIMTGSGAF 179
Query: 200 VEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNEV 242
VE+QG+ E ATFS+ ++ L K I++LI++QK+ + ++V
Sbjct: 180 VELQGTGEEATFSETELAELIALGKKGISELIEIQKETLGDKV 222
>gi|110643405|ref|YP_671135.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli 536]
gi|117625460|ref|YP_858783.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli APEC
O1]
gi|218560236|ref|YP_002393149.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli S88]
gi|218691456|ref|YP_002399668.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli ED1a]
gi|227887888|ref|ZP_04005693.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli 83972]
gi|300977831|ref|ZP_07174071.1| polyribonucleotide nucleotidyltransferase [Escherichia coli MS
200-1]
gi|300990763|ref|ZP_07179335.1| polyribonucleotide nucleotidyltransferase [Escherichia coli MS
45-1]
gi|301047994|ref|ZP_07195036.1| polyribonucleotide nucleotidyltransferase [Escherichia coli MS
185-1]
gi|331654770|ref|ZP_08355770.1| polyribonucleotide nucleotidyltransferase [Escherichia coli M718]
gi|110344997|gb|ABG71234.1| polyribonucleotide nucleotidyltransferase [Escherichia coli 536]
gi|115514584|gb|ABJ02659.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli APEC
O1]
gi|218367005|emb|CAR04776.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli S88]
gi|218429020|emb|CAR09967.2| polynucleotide phosphorylase/polyadenylase [Escherichia coli ED1a]
gi|227835284|gb|EEJ45750.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli 83972]
gi|300300137|gb|EFJ56522.1| polyribonucleotide nucleotidyltransferase [Escherichia coli MS
185-1]
gi|300308208|gb|EFJ62728.1| polyribonucleotide nucleotidyltransferase [Escherichia coli MS
200-1]
gi|300407071|gb|EFJ90609.1| polyribonucleotide nucleotidyltransferase [Escherichia coli MS
45-1]
gi|307555260|gb|ADN48035.1| polyribonucleotide nucleotidyltransferase [Escherichia coli ABU
83972]
gi|312947723|gb|ADR28550.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli O83:H1
str. NRG 857C]
gi|315288934|gb|EFU48332.1| polyribonucleotide nucleotidyltransferase [Escherichia coli MS
110-3]
gi|315294909|gb|EFU54248.1| polyribonucleotide nucleotidyltransferase [Escherichia coli MS
153-1]
gi|315297884|gb|EFU57154.1| polyribonucleotide nucleotidyltransferase [Escherichia coli MS
16-3]
gi|324008763|gb|EGB77982.1| polyribonucleotide nucleotidyltransferase [Escherichia coli MS
57-2]
gi|324012110|gb|EGB81329.1| polyribonucleotide nucleotidyltransferase [Escherichia coli MS
60-1]
gi|331048152|gb|EGI20229.1| polyribonucleotide nucleotidyltransferase [Escherichia coli M718]
Length = 734
Score = 146 bits (367), Expect = 4e-33, Method: Composition-based stats.
Identities = 45/242 (18%), Positives = 92/242 (38%), Gaps = 18/242 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR+++ +R + + V GS L G+T L TATL + +V + +
Sbjct: 338 RIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVLDELMGERTD 397
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + R+ G + R + +V+ + + +
Sbjct: 398 TFLFHYNFPPYSVGETGMVGSPKRREIGHGRL----AKRGVLAVMPDMDKFPYTVRVVSE 453
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ GA +AL D ++ + V +G + +
Sbjct: 454 ITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLSD---------I 504
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D + G I +Q + +++ LN AK ++ + +
Sbjct: 505 LGDEDHLGDMDFKVAGSRDG-ISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQA 563
Query: 238 IS 239
I+
Sbjct: 564 IN 565
Score = 95.7 bits (236), Expect = 5e-18, Method: Composition-based stats.
Identities = 37/232 (15%), Positives = 76/232 (32%), Gaps = 27/232 (11%)
Query: 14 ISLTRRV-SKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----HGWITAEYGMLPR 68
++L + ++ A + +V DT + T ++K + T G +P
Sbjct: 39 VTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVNYQERTYAAGRIPG 98
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
S R GR I R+I R +R + + Q+I +
Sbjct: 99 SFFRR------EGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVNPDIV 152
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+ GA A G + A G + +++ E +D
Sbjct: 153 AMIGASAA-------------LSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLD 199
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
T++ ++ V+ AE S+D + ++ +I+ +++
Sbjct: 200 LVVAGTEA-AVLMVESEAEL--LSEDQMLGAVVFGHEQQQVVIQNINELVKE 248
>gi|238793025|ref|ZP_04636654.1| Polyribonucleotide nucleotidyltransferase [Yersinia intermedia ATCC
29909]
gi|238727625|gb|EEQ19150.1| Polyribonucleotide nucleotidyltransferase [Yersinia intermedia ATCC
29909]
Length = 706
Score = 146 bits (367), Expect = 4e-33, Method: Composition-based stats.
Identities = 44/242 (18%), Positives = 91/242 (37%), Gaps = 18/242 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR+++ +R + + V GS L G+T L TATL + + + +
Sbjct: 315 RIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQNIDELMGERTD 374
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P G + R+ G + R + +V+ + + + +
Sbjct: 375 SFLLHYNFPPYCVGETGMVGSPKRREIGHGRL----AKRGVLAVMPSPSEFPYTVRVVSE 430
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ GA +AL D ++ + V +G + +
Sbjct: 431 ITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGENFVVLSD---------I 481
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D + G I +Q + +++ LN AK ++ + +
Sbjct: 482 LGDEDHLGDMDFKVAGSRDG-ITALQMDIKIEGITREIMQVALNQAKGARLHILGVMEQA 540
Query: 238 IS 239
IS
Sbjct: 541 IS 542
Score = 92.2 bits (227), Expect = 5e-17, Method: Composition-based stats.
Identities = 36/232 (15%), Positives = 75/232 (32%), Gaps = 27/232 (11%)
Query: 14 ISLTRRV-SKYAEGSCLVKFGDTHLLTTATLEEKVPM----WIRNTKHGWITAEYGMLPR 68
+++ + ++ A + +V DT + T ++K + + T G +P
Sbjct: 16 VTIETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQSFFPLTVNYQERTYAAGRIPG 75
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
S R GR R+I R +R + S L Q+I +
Sbjct: 76 SFFRR------EGRPSEGETLTSRLIDRPIRPLFPDSFLNEVQVIATVVSVNPQVNPDIV 129
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+ GA A G + A G + +++ E +D
Sbjct: 130 ALIGASAA-------------LSLSGIPFNGPIGAARVGYINDQYVLNPTTDELKESRLD 176
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
T ++ V+ A+ S+D + ++ +I+ +++
Sbjct: 177 LVVAGTAD-AVLMVESEAQI--LSEDQMLGAVIFGHEQQQVVIENINALVAE 225
>gi|332976846|gb|EGK13671.1| polyribonucleotide nucleotidyltransferase [Desmospora sp. 8437]
Length = 697
Score = 146 bits (367), Expect = 4e-33, Method: Composition-based stats.
Identities = 42/243 (17%), Positives = 80/243 (32%), Gaps = 18/243 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHG 57
R GR ++R ++ + GS + G T +L+ T + ++ + +
Sbjct: 315 RPDGRSPEEIRPLTSEVGILPRTHGSGHFRRGQTQVLSVCTLGALGDVQILDGLDLEESK 374
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G R+ G RAL V+ I + +
Sbjct: 375 RFMHHYNFPPYSVGESRPMRGPGRREIGHGALG----ERALEPVIPSEEEFPYTIRLVSE 430
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
V++++G T A+I + +AL D ++D + V +G + +
Sbjct: 431 VLESNGSTSQASICASTLALMDAGVPIKDPVAGIAMGLVKEGDQVTVLTD---------I 481
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T G + +Q + ++ L A L+
Sbjct: 482 QGMEDHLGDMDFKVAGTRKG-VTALQMDIKIEEIDREVLSQALQQAHRARHVLLDNMTAT 540
Query: 238 ISN 240
+
Sbjct: 541 LGE 543
Score = 114 bits (284), Expect = 1e-23, Method: Composition-based stats.
Identities = 41/233 (17%), Positives = 83/233 (35%), Gaps = 26/233 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPM---WIRNTKHGWITAEYGMLP 67
R +++ + A G+ LV++GDT ++ TAT ++ + + G +P
Sbjct: 14 RRLTMEVGKYANQANGAVLVRYGDTAVMATATASDEPKDLGFFPLTVNYEERLYAVGKIP 73
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R GR ++ R+I R +R + Q++ + D T
Sbjct: 74 GGFIKR------EGRPSEKAILASRLIDRPIRPLFPEGYRNDVQVVTTVMSVDQDCSTEI 127
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
AA+ GA A G +A + G + G +++ + D+
Sbjct: 128 AAMIGASTA-------------LSISDIPFAGPIAGVIVGRVNGKWVLNPSVEQAEKSDL 174
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
T G I V+ A+ ++ + + I ++I Q+ ++
Sbjct: 175 HLVVAGTKHG-INMVEAGADEVP--EEVMLEGILFGHEAIKEMIAFQEKIVGQ 224
>gi|329997819|ref|ZP_08302920.1| polyribonucleotide nucleotidyltransferase [Klebsiella sp. MS 92-3]
gi|328538902|gb|EGF64965.1| polyribonucleotide nucleotidyltransferase [Klebsiella sp. MS 92-3]
Length = 684
Score = 146 bits (367), Expect = 4e-33, Method: Composition-based stats.
Identities = 44/242 (18%), Positives = 91/242 (37%), Gaps = 18/242 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR+++ +R + + V GS L G+T L TATL + + + +
Sbjct: 294 RIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQNIDELMGERTD 353
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + R+ G + R + +V+ + + +
Sbjct: 354 SFLFHYNFPPYSVGETGMVGSPKRREIGHGRL----AKRGVLAVMPTIEEFPYTVRVVSE 409
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ GA +AL D ++ + V +G + +
Sbjct: 410 ITESNGSSSMASVCGASLALMDAGVPVKAAVAGIAMGLVKEGDNFVVLSD---------I 460
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D + G I +Q + +++ LN AK ++ + +
Sbjct: 461 LGDEDHLGDMDFKVAGSRDG-ISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQA 519
Query: 238 IS 239
I+
Sbjct: 520 IN 521
Score = 89.5 bits (220), Expect = 4e-16, Method: Composition-based stats.
Identities = 37/226 (16%), Positives = 73/226 (32%), Gaps = 30/226 (13%)
Query: 20 VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----HGWITAEYGMLPRSTGNRVK 75
+++ A + +V DT + T ++K + T G +P R
Sbjct: 2 MARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVNYQERTYAAGKIPGGFFRR-- 59
Query: 76 REAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWV 135
GR I R+I R +R + + Q+I + A+ GA
Sbjct: 60 ----EGRPSEGETLIARLIDRPVRPLFPEGFVNEVQVIATVVSVNPQVNPDIVAMIGASA 115
Query: 136 ALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTD 195
A G + A G + +++ E + +D T+
Sbjct: 116 A-------------LSLSGIPFNGPIGAARVGYINDQYVLNPTQEELKSSKLDLVVAGTE 162
Query: 196 SGHIVEVQGSAERATFSQDHFFAMLNLAKDR----IADLIKLQKDV 237
+ ++ V+ AE S+D + ++ I ++ L K+
Sbjct: 163 A-AVLMVESEAEL--LSEDQMLGAVVFGHEQQQIVIQNINDLVKEA 205
>gi|300948813|ref|ZP_07162881.1| polyribonucleotide nucleotidyltransferase [Escherichia coli MS
116-1]
gi|300451702|gb|EFK15322.1| polyribonucleotide nucleotidyltransferase [Escherichia coli MS
116-1]
Length = 734
Score = 146 bits (367), Expect = 4e-33, Method: Composition-based stats.
Identities = 45/242 (18%), Positives = 92/242 (38%), Gaps = 18/242 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR+++ +R + + V GS L G+T L TATL + +V + +
Sbjct: 338 RIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVLDELMGERTD 397
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + R+ G + R + +V+ + + +
Sbjct: 398 TFLFHYNFPPYSVGETGMVGSPKRREIGHGRL----AKRGVLAVMPDMDKFPYTVRVVSE 453
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ GA +AL D ++ + V +G + +
Sbjct: 454 ITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLSD---------I 504
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D + G I +Q + +++ LN AK ++ + +
Sbjct: 505 LGDEDHLGDMDFKVAGSRDG-ISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQA 563
Query: 238 IS 239
I+
Sbjct: 564 IN 565
Score = 94.1 bits (232), Expect = 1e-17, Method: Composition-based stats.
Identities = 36/232 (15%), Positives = 76/232 (32%), Gaps = 27/232 (11%)
Query: 14 ISLTRRV-SKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----HGWITAEYGMLPR 68
++L + ++ A + +V DT + T ++K + T G +P
Sbjct: 39 VTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVNYQERTYAAGRIPG 98
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
S R GR I R+I R +R + + Q+I +
Sbjct: 99 SFFRR------EGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVNPDIV 152
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+ GA A G + A G + +++ E +D
Sbjct: 153 AMIGASAA-------------LSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLD 199
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
T++ ++ V+ +E S+D + ++ +I+ +++
Sbjct: 200 LVVAGTEA-AVLMVE--SEAQLLSEDQMLGAVVFGHEQQQVVIQNINELVKE 248
>gi|89109929|ref|AP_003709.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli str.
K-12 substr. W3110]
gi|170082701|ref|YP_001732021.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli str.
K-12 substr. DH10B]
gi|254163108|ref|YP_003046216.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli B str.
REL606]
gi|300929854|ref|ZP_07145300.1| polyribonucleotide nucleotidyltransferase [Escherichia coli MS
187-1]
gi|300955750|ref|ZP_07168095.1| polyribonucleotide nucleotidyltransferase [Escherichia coli MS
175-1]
gi|301644875|ref|ZP_07244847.1| polyribonucleotide nucleotidyltransferase [Escherichia coli MS
146-1]
gi|331643864|ref|ZP_08344995.1| polyribonucleotide nucleotidyltransferase [Escherichia coli H736]
gi|606104|gb|AAA57967.1| polynucleotide phosphorylase [Escherichia coli str. K-12 substr.
MG1655]
gi|85675960|dbj|BAE77210.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli str.
K12 substr. W3110]
gi|169890536|gb|ACB04243.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli str.
K-12 substr. DH10B]
gi|253975009|gb|ACT40680.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli B str.
REL606]
gi|253979165|gb|ACT44835.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli
BL21(DE3)]
gi|300317383|gb|EFJ67167.1| polyribonucleotide nucleotidyltransferase [Escherichia coli MS
175-1]
gi|300462216|gb|EFK25709.1| polyribonucleotide nucleotidyltransferase [Escherichia coli MS
187-1]
gi|301076820|gb|EFK91626.1| polyribonucleotide nucleotidyltransferase [Escherichia coli MS
146-1]
gi|309703592|emb|CBJ02932.1| polyribonucleotide nucleotidyltransferase [Escherichia coli ETEC
H10407]
gi|331037335|gb|EGI09559.1| polyribonucleotide nucleotidyltransferase [Escherichia coli H736]
Length = 734
Score = 146 bits (367), Expect = 4e-33, Method: Composition-based stats.
Identities = 45/242 (18%), Positives = 92/242 (38%), Gaps = 18/242 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR+++ +R + + V GS L G+T L TATL + +V + +
Sbjct: 338 RIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVLDELMGERTD 397
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + R+ G + R + +V+ + + +
Sbjct: 398 TFLFHYNFPPYSVGETGMVGSPKRREIGHGRL----AKRGVLAVMPDMDKFPYTVRVVSE 453
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ GA +AL D ++ + V +G + +
Sbjct: 454 ITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLSD---------I 504
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D + G I +Q + +++ LN AK ++ + +
Sbjct: 505 LGDEDHLGDMDFKVAGSRDG-ISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQA 563
Query: 238 IS 239
I+
Sbjct: 564 IN 565
Score = 94.1 bits (232), Expect = 1e-17, Method: Composition-based stats.
Identities = 36/232 (15%), Positives = 76/232 (32%), Gaps = 27/232 (11%)
Query: 14 ISLTRRV-SKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----HGWITAEYGMLPR 68
++L + ++ A + +V DT + T ++K + T G +P
Sbjct: 39 VTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVNYQERTYAAGRIPG 98
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
S R GR I R+I R +R + + Q+I +
Sbjct: 99 SFFRR------EGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVNPDIV 152
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+ GA A G + A G + +++ E +D
Sbjct: 153 AMIGASAA-------------LSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLD 199
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
T++ ++ V+ +E S+D + ++ +I+ +++
Sbjct: 200 LVVAGTEA-AVLMVE--SEAQLLSEDQMLGAVVFGHEQQQVVIQNINELVKE 248
>gi|307249785|ref|ZP_07531763.1| Polyribonucleotide nucleotidyltransferase [Actinobacillus
pleuropneumoniae serovar 4 str. M62]
gi|306858200|gb|EFM90278.1| Polyribonucleotide nucleotidyltransferase [Actinobacillus
pleuropneumoniae serovar 4 str. M62]
Length = 715
Score = 145 bits (366), Expect = 4e-33, Method: Composition-based stats.
Identities = 42/241 (17%), Positives = 88/241 (36%), Gaps = 18/241 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR + +R + + V GS + G+T L ATL + ++ + K
Sbjct: 314 RIDGRTVDTVRALDICTGVLPRTHGSAIFTRGETQALAVATLGTERDAQIIDELTGEKSD 373
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + + R+ G + R + +V+ + + + +
Sbjct: 374 RFLFHYNFPPYSVGETGRIGSPKRREIGHGRL----AKRGVLAVMPTAEEFPYVVRVVSE 429
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ GA +AL D ++ + V + + +
Sbjct: 430 ITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEEEKFVVLSD---------I 480
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T G + +Q + + + LN AK ++ + +
Sbjct: 481 LGDEDHLGDMDFKVAGTREG-VTALQMDIKIEGITPEIMQIALNQAKGARMHILSVMEQA 539
Query: 238 I 238
I
Sbjct: 540 I 540
Score = 92.2 bits (227), Expect = 5e-17, Method: Composition-based stats.
Identities = 34/232 (14%), Positives = 72/232 (31%), Gaps = 27/232 (11%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT----KHGWITAEYGMLPR 68
++L +++ A + + DT + T +++V + T G +P
Sbjct: 15 VTLETGAIARQATAAVMASMDDTTVFVTVVAKKEVKEGQDFFPLTVDYQERTYAAGRIPG 74
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
R GR I R+I R +R + Q+I +
Sbjct: 75 GFFKR------EGRPSEGETLIARLIDRPVRPLFPEGFFNEIQVIATVVSVNPQISPDLV 128
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+ GA A G + A G + +++ E +D
Sbjct: 129 AMIGASAA-------------LSLSGVPFNGPIGAARVGFINDQFVLNPTTSEQKISHLD 175
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
T ++ V+ A+ S++ + + + +I+ K+ +
Sbjct: 176 LVVAGT-DKAVLMVESEADI--LSEEQMLSAVVFGHQQQQVVIENIKEFVKE 224
>gi|88608486|ref|YP_505958.1| polynucleotide phosphorylase/polyadenylase [Neorickettsia sennetsu
str. Miyayama]
gi|123750038|sp|Q2GEY8|PNP_NEOSM RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|88600655|gb|ABD46123.1| polyribonucleotide nucleotidyltransferase [Neorickettsia sennetsu
str. Miyayama]
Length = 757
Score = 145 bits (366), Expect = 4e-33, Method: Composition-based stats.
Identities = 51/244 (20%), Positives = 93/244 (38%), Gaps = 18/244 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
+R GR ++R IS+ GS L G T L ATL +E+V I +
Sbjct: 317 IRPDGRSLTEIRPISIALDYLPGTHGSALFTRGGTQSLVVATLGSYQDEQVMDDIDGERR 376
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
+ Y LP + G A R+ G + +A+++V+ + + +
Sbjct: 377 ESVLLHYNFLPYAVGEVGALRAPGRREIGHGRL----ALKAVKAVLPGKEVFPYTLRLVS 432
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
++ ++DG + A + G+ +AL D + + + G +A+
Sbjct: 433 EITESDGSSSMATVCGSSLALMDTGVPITKHVAGIAMGLITDGVRSAVLSD--------- 483
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T +G IV +Q + S LN A +++ +
Sbjct: 484 ISGDEDMLGDMDFKVAGTRNG-IVALQMDMKVRGISIATIRDALNQALAGRLHILEKMEH 542
Query: 237 VISN 240
VI+
Sbjct: 543 VIAK 546
Score = 52.2 bits (123), Expect = 7e-05, Method: Composition-based stats.
Identities = 29/231 (12%), Positives = 70/231 (30%), Gaps = 21/231 (9%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK-HGWITAEYGMLPRSTG 71
+ + V++ A G+ V +G T +L TL++ + + G +
Sbjct: 16 LHIKTGEVARQAAGAACVSYGGTVVLAVVTLQKDTAASKKTSDLSGLALVTNFLAKSYAL 75
Query: 72 NRVKREAVSG--RQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAA 129
R+ + R R++ RA+R +++ + + I+
Sbjct: 76 GRIPNGFFKREGKLSEREVLASRVVDRAVRPLIEENLVNEVNIVCKLLAH---------- 125
Query: 130 ITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDA 189
G L + + + G V + M + + ++
Sbjct: 126 --GNRKVLPEIPALIAASAALQLSGIPFSGPVIGVDVDMRGSEVTCNEIRETE--GGLEL 181
Query: 190 NFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
T+ +V AE + S++ L+ A + + + +
Sbjct: 182 FVACTEE-SVVM--VEAEASEASEEEVVNALSEALKSAKPVFSFINEFVKS 229
>gi|254696416|ref|ZP_05158244.1| polynucleotide phosphorylase/polyadenylase [Brucella abortus bv. 2
str. 86/8/59]
gi|260760788|ref|ZP_05873131.1| polyribonucleotide nucleotidyltransferase [Brucella abortus bv. 2
str. 86/8/59]
gi|260671220|gb|EEX58041.1| polyribonucleotide nucleotidyltransferase [Brucella abortus bv. 2
str. 86/8/59]
Length = 528
Score = 145 bits (366), Expect = 4e-33, Method: Composition-based stats.
Identities = 42/226 (18%), Positives = 81/226 (35%), Gaps = 18/226 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR + +R I + GS L G+T + ATL +E++ + T
Sbjct: 317 RIDGRDLSTVRPIVSEVGILPRTHGSALFTRGETQAIVVATLGTGEDEQMIDALTGTYKE 376
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + + R+ G + RA+ ++ + I +
Sbjct: 377 SFMLHYNFPPYSVGETGRMGSPGRREIGHGKL----AWRAIHPMLPAAEQFPYTIRAVSE 432
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A + G +AL D + + + +G A+ +
Sbjct: 433 ITESNGSSSMATVCGTSLALMDAGVPIVRPVAGIAMGLIKEGERFAVLSD---------I 483
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLA 223
ED D+D T+ G I +Q + +++ L A
Sbjct: 484 LGDEDHLGDMDFKVAGTEFG-ITSLQMDIKIDGITEEIMKVALEQA 528
Score = 108 bits (268), Expect = 9e-22, Method: Composition-based stats.
Identities = 33/228 (14%), Positives = 71/228 (31%), Gaps = 27/228 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----HGWITAEYGML 66
R ++L +++ A+G+ L +G+T +L T ++ + T G +
Sbjct: 14 RPLTLETGKIARQADGAVLATYGETAVLATVVSAKEPKPGQDFFPLTVNYQEKTYAAGKI 73
Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
P R GR + R+I R +R + Q++I +
Sbjct: 74 PGGYFKR------EGRPSENETLVSRLIDRPIRPLFVDGYKNDTQVVITVLQHDLENNPD 127
Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
++ A A G ++ G + G +++ + E
Sbjct: 128 ILSMVAASAA-------------LTISGVPFMGPISGARVGYIDGEYVLNPNIDEMPESK 174
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
+D T ++ V+ A+ +D + +I
Sbjct: 175 LDLVVAGTSE-AVLMVESEAQE--LPEDVMLGAVMFGHKSFQPVIDAI 219
>gi|15803706|ref|NP_289740.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli
O157:H7 EDL933]
gi|15833299|ref|NP_312072.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli
O157:H7 str. Sakai]
gi|74313701|ref|YP_312120.1| polynucleotide phosphorylase/polyadenylase [Shigella sonnei Ss046]
gi|209920641|ref|YP_002294725.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli SE11]
gi|218696871|ref|YP_002404538.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli 55989]
gi|218701935|ref|YP_002409564.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli IAI39]
gi|260845979|ref|YP_003223757.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli
O103:H2 str. 12009]
gi|291284540|ref|YP_003501358.1| Polynucleotide phosphorylase/polyadenylase [Escherichia coli O55:H7
str. CB9615]
gi|293416598|ref|ZP_06659237.1| polyribonucleotide nucleotidyltransferase [Escherichia coli B185]
gi|300817584|ref|ZP_07097800.1| polyribonucleotide nucleotidyltransferase [Escherichia coli MS
107-1]
gi|300823873|ref|ZP_07103997.1| polyribonucleotide nucleotidyltransferase [Escherichia coli MS
119-7]
gi|300904350|ref|ZP_07122203.1| polyribonucleotide nucleotidyltransferase [Escherichia coli MS
84-1]
gi|300926097|ref|ZP_07141915.1| polyribonucleotide nucleotidyltransferase [Escherichia coli MS
182-1]
gi|300938074|ref|ZP_07152852.1| polyribonucleotide nucleotidyltransferase [Escherichia coli MS
21-1]
gi|301301780|ref|ZP_07207914.1| polyribonucleotide nucleotidyltransferase [Escherichia coli MS
124-1]
gi|301326413|ref|ZP_07219767.1| polyribonucleotide nucleotidyltransferase [Escherichia coli MS
78-1]
gi|331669993|ref|ZP_08370838.1| polyribonucleotide nucleotidyltransferase [Escherichia coli TA271]
gi|331679245|ref|ZP_08379917.1| polyribonucleotide nucleotidyltransferase [Escherichia coli H591]
gi|12517775|gb|AAG58300.1|AE005545_2 polynucleotide phosphorylase; cytidylate kinase activity
[Escherichia coli O157:H7 str. EDL933]
gi|13363518|dbj|BAB37468.1| polynucleotide phosphorylase [Escherichia coli O157:H7 str. Sakai]
gi|73857178|gb|AAZ89885.1| polynucleotide phosphorylase [Shigella sonnei Ss046]
gi|209758378|gb|ACI77501.1| polynucleotide phosphorylase [Escherichia coli]
gi|209758380|gb|ACI77502.1| polynucleotide phosphorylase [Escherichia coli]
gi|209758382|gb|ACI77503.1| polynucleotide phosphorylase [Escherichia coli]
gi|209758384|gb|ACI77504.1| polynucleotide phosphorylase [Escherichia coli]
gi|209758386|gb|ACI77505.1| polynucleotide phosphorylase [Escherichia coli]
gi|209913900|dbj|BAG78974.1| polynucleotide phosphorylase [Escherichia coli SE11]
gi|218353603|emb|CAU99791.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli 55989]
gi|218371921|emb|CAR19777.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli IAI39]
gi|257761126|dbj|BAI32623.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli
O103:H2 str. 12009]
gi|290764413|gb|ADD58374.1| Polynucleotide phosphorylase/polyadenylase [Escherichia coli O55:H7
str. CB9615]
gi|291431954|gb|EFF04937.1| polyribonucleotide nucleotidyltransferase [Escherichia coli B185]
gi|300403701|gb|EFJ87239.1| polyribonucleotide nucleotidyltransferase [Escherichia coli MS
84-1]
gi|300417862|gb|EFK01173.1| polyribonucleotide nucleotidyltransferase [Escherichia coli MS
182-1]
gi|300456934|gb|EFK20427.1| polyribonucleotide nucleotidyltransferase [Escherichia coli MS
21-1]
gi|300523641|gb|EFK44710.1| polyribonucleotide nucleotidyltransferase [Escherichia coli MS
119-7]
gi|300529882|gb|EFK50944.1| polyribonucleotide nucleotidyltransferase [Escherichia coli MS
107-1]
gi|300842761|gb|EFK70521.1| polyribonucleotide nucleotidyltransferase [Escherichia coli MS
124-1]
gi|300846902|gb|EFK74662.1| polyribonucleotide nucleotidyltransferase [Escherichia coli MS
78-1]
gi|315257090|gb|EFU37058.1| polyribonucleotide nucleotidyltransferase [Escherichia coli MS
85-1]
gi|324018312|gb|EGB87531.1| polyribonucleotide nucleotidyltransferase [Escherichia coli MS
117-3]
gi|331062906|gb|EGI34820.1| polyribonucleotide nucleotidyltransferase [Escherichia coli TA271]
gi|331073310|gb|EGI44633.1| polyribonucleotide nucleotidyltransferase [Escherichia coli H591]
Length = 734
Score = 145 bits (366), Expect = 4e-33, Method: Composition-based stats.
Identities = 45/242 (18%), Positives = 92/242 (38%), Gaps = 18/242 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR+++ +R + + V GS L G+T L TATL + +V + +
Sbjct: 338 RIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVLDELMGERTD 397
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + R+ G + R + +V+ + + +
Sbjct: 398 TFLFHYNFPPYSVGETGMVGSPKRREIGHGRL----AKRGVLAVMPDMDKFPYTVRVVSE 453
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ GA +AL D ++ + V +G + +
Sbjct: 454 ITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLSD---------I 504
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D + G I +Q + +++ LN AK ++ + +
Sbjct: 505 LGDEDHLGDMDFKVAGSRDG-ISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQA 563
Query: 238 IS 239
I+
Sbjct: 564 IN 565
Score = 95.7 bits (236), Expect = 5e-18, Method: Composition-based stats.
Identities = 37/232 (15%), Positives = 76/232 (32%), Gaps = 27/232 (11%)
Query: 14 ISLTRRV-SKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----HGWITAEYGMLPR 68
++L + ++ A + +V DT + T ++K + T G +P
Sbjct: 39 VTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVNYQERTYAAGRIPG 98
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
S R GR I R+I R +R + + Q+I +
Sbjct: 99 SFFRR------EGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVNPDIV 152
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+ GA A G + A G + +++ E +D
Sbjct: 153 AMIGASAA-------------LSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLD 199
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
T++ ++ V+ AE S+D + ++ +I+ +++
Sbjct: 200 LVVAGTEA-AVLMVESEAEL--LSEDQMLGAVVFGHEQQQVVIQNINELVKE 248
>gi|32034381|ref|ZP_00134571.1| COG1185: Polyribonucleotide nucleotidyltransferase (polynucleotide
phosphorylase) [Actinobacillus pleuropneumoniae serovar
1 str. 4074]
gi|126208059|ref|YP_001053284.1| polynucleotide phosphorylase/polyadenylase [Actinobacillus
pleuropneumoniae L20]
gi|303252208|ref|ZP_07338376.1| polynucleotide phosphorylase/polyadenylase [Actinobacillus
pleuropneumoniae serovar 2 str. 4226]
gi|307247551|ref|ZP_07529595.1| Polyribonucleotide nucleotidyltransferase [Actinobacillus
pleuropneumoniae serovar 2 str. S1536]
gi|307256599|ref|ZP_07538380.1| Polyribonucleotide nucleotidyltransferase [Actinobacillus
pleuropneumoniae serovar 10 str. D13039]
gi|307261033|ref|ZP_07542715.1| Polyribonucleotide nucleotidyltransferase [Actinobacillus
pleuropneumoniae serovar 12 str. 1096]
gi|307263214|ref|ZP_07544834.1| Polyribonucleotide nucleotidyltransferase [Actinobacillus
pleuropneumoniae serovar 13 str. N273]
gi|187470959|sp|A3MZU3|PNP_ACTP2 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|257096735|sp|B3GXC1|PNP_ACTP7 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|126096851|gb|ABN73679.1| polyribonucleotide nucleotidyltransferase [Actinobacillus
pleuropneumoniae serovar 5b str. L20]
gi|302648991|gb|EFL79179.1| polynucleotide phosphorylase/polyadenylase [Actinobacillus
pleuropneumoniae serovar 2 str. 4226]
gi|306855916|gb|EFM88075.1| Polyribonucleotide nucleotidyltransferase [Actinobacillus
pleuropneumoniae serovar 2 str. S1536]
gi|306865009|gb|EFM96911.1| Polyribonucleotide nucleotidyltransferase [Actinobacillus
pleuropneumoniae serovar 10 str. D13039]
gi|306869335|gb|EFN01130.1| Polyribonucleotide nucleotidyltransferase [Actinobacillus
pleuropneumoniae serovar 12 str. 1096]
gi|306871431|gb|EFN03155.1| Polyribonucleotide nucleotidyltransferase [Actinobacillus
pleuropneumoniae serovar 13 str. N273]
Length = 715
Score = 145 bits (366), Expect = 4e-33, Method: Composition-based stats.
Identities = 42/241 (17%), Positives = 88/241 (36%), Gaps = 18/241 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR + +R + + V GS + G+T L ATL + ++ + K
Sbjct: 314 RIDGRTVDTVRALDICTGVLPRTHGSAIFTRGETQALAVATLGTERDAQIIDELTGEKSD 373
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + + R+ G + R + +V+ + + + +
Sbjct: 374 RFLFHYNFPPYSVGETGRIGSPKRREIGHGRL----AKRGVLAVMPTAEEFPYVVRVVSE 429
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ GA +AL D ++ + V + + +
Sbjct: 430 ITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEEEKFVVLSD---------I 480
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T G + +Q + + + LN AK ++ + +
Sbjct: 481 LGDEDHLGDMDFKVAGTREG-VTALQMDIKIEGITPEIMQIALNQAKGARMHILSVMEQA 539
Query: 238 I 238
I
Sbjct: 540 I 540
Score = 91.8 bits (226), Expect = 7e-17, Method: Composition-based stats.
Identities = 34/232 (14%), Positives = 72/232 (31%), Gaps = 27/232 (11%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT----KHGWITAEYGMLPR 68
++L +++ A + + DT + T +++V + T G +P
Sbjct: 15 VTLETGAIARQATAAVMASMDDTTVFVTVVAKKEVKEGQDFFPLTVDYQERTYAAGRIPG 74
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
R GR I R+I R +R + Q+I +
Sbjct: 75 GFFKR------EGRPSEGETLIARLIDRPVRPLFPEGFFNEIQVIATVVSVNPQISPDLV 128
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+ GA A G + A G + +++ E +D
Sbjct: 129 AMIGASAA-------------LSLSGVPFNGPIGAARVGFINDQFVLNPTTSEQKISRLD 175
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
T ++ V+ A+ S++ + + + +I+ K+ +
Sbjct: 176 LVVAGT-DKAVLMVESEADI--LSEEQMLSAVVFGHQQQQVVIENIKEFVKE 224
>gi|262042723|ref|ZP_06015877.1| polyribonucleotide nucleotidyltransferase [Klebsiella pneumoniae
subsp. rhinoscleromatis ATCC 13884]
gi|259039948|gb|EEW41065.1| polyribonucleotide nucleotidyltransferase [Klebsiella pneumoniae
subsp. rhinoscleromatis ATCC 13884]
Length = 687
Score = 145 bits (366), Expect = 4e-33, Method: Composition-based stats.
Identities = 45/242 (18%), Positives = 91/242 (37%), Gaps = 18/242 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR+++ +R + + V GS L G+T L TATL + + +
Sbjct: 294 RIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQNIDELMGELTD 353
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + R+ G + R + +V+ + + +
Sbjct: 354 SFLFHYNFPPYSVGETGMVGSPKRREIGHGRL----AKRGVLAVMPTIEEFPYTVRVVSE 409
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ GA +AL D ++ + V +G + +
Sbjct: 410 ITESNGSSSMASVCGASLALMDAGVPVKAAVAGIAMGLVKEGDNFVVLSD---------I 460
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D + G I +Q + +++ LNLAK ++ + +
Sbjct: 461 LGDEDHLGDMDFKVAGSRDG-ISALQMDIKIEGITKEIMQVALNLAKGARLHILGVMEQA 519
Query: 238 IS 239
I+
Sbjct: 520 IN 521
Score = 89.5 bits (220), Expect = 3e-16, Method: Composition-based stats.
Identities = 37/226 (16%), Positives = 73/226 (32%), Gaps = 30/226 (13%)
Query: 20 VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----HGWITAEYGMLPRSTGNRVK 75
+++ A + +V DT + T ++K + T G +P R
Sbjct: 2 MARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVNYQERTYAAGKIPGGFFRR-- 59
Query: 76 REAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWV 135
GR I R+I R +R + + Q+I + A+ GA
Sbjct: 60 ----EGRPSEGETLIARLIDRPVRPLFPEGFVNEVQVIATVVSVNPQVNPDIVAMIGASA 115
Query: 136 ALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTD 195
A G + A G + +++ E + +D T+
Sbjct: 116 A-------------LSLSGIPFNGPIGAARVGYINDQYVLNPTQEELKSSKLDLVVAGTE 162
Query: 196 SGHIVEVQGSAERATFSQDHFFAMLNLAKDR----IADLIKLQKDV 237
+ ++ V+ AE S+D + ++ I ++ L K+
Sbjct: 163 A-AVLMVESEAEL--LSEDQMLGAVVFGHEQQQIVIQNINDLVKEA 205
>gi|187610338|sp|A8AQ53|PNP_CITK8 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
Length = 711
Score = 145 bits (366), Expect = 4e-33, Method: Composition-based stats.
Identities = 45/242 (18%), Positives = 92/242 (38%), Gaps = 18/242 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR+++ +R + + V GS L G+T L TATL + +V + +
Sbjct: 315 RIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVLDELMGERTD 374
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + R+ G + R + +V+ + + +
Sbjct: 375 SFLFHYNFPPYSVGETGMVGSPKRREIGHGRL----AKRGVLAVMPEMDKFPYTVRVVSE 430
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ GA +AL D ++ + V +G + +
Sbjct: 431 ITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNFVVLSD---------I 481
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D + G I +Q + +++ LN AK ++ + +
Sbjct: 482 LGDEDHLGDMDFKVAGSRDG-ISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQA 540
Query: 238 IS 239
I+
Sbjct: 541 IN 542
Score = 92.2 bits (227), Expect = 6e-17, Method: Composition-based stats.
Identities = 39/233 (16%), Positives = 76/233 (32%), Gaps = 31/233 (13%)
Query: 14 ISLTRRV-SKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----HGWITAEYGMLPR 68
++L + ++ A + +V DT + T ++K + T G +P
Sbjct: 16 VTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVNYQERTYAAGRIPG 75
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
S R GR I R+I R +R + + Q+I +
Sbjct: 76 SFFRR------EGRPSEGETLIARLIDRPVRPLFPEGFVNEVQVIATVVSVNPQVNPDIV 129
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+ GA A G + A G + +++ E +D
Sbjct: 130 AMIGASAA-------------LSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLD 176
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR----IADLIKLQKDV 237
T++ ++ V+ AE S+D + ++ I ++ L K+
Sbjct: 177 LVVAGTEA-AVLMVESEAEL--LSEDTMLGAVVFGHEQQQIVIQNINDLVKEA 226
>gi|218550449|ref|YP_002384240.1| polynucleotide phosphorylase/polyadenylase [Escherichia fergusonii
ATCC 35469]
gi|218357990|emb|CAQ90636.1| polynucleotide phosphorylase/polyadenylase [Escherichia fergusonii
ATCC 35469]
Length = 734
Score = 145 bits (366), Expect = 4e-33, Method: Composition-based stats.
Identities = 45/242 (18%), Positives = 92/242 (38%), Gaps = 18/242 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR+++ +R + + V GS L G+T L TATL + +V + +
Sbjct: 338 RIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVLDELMGERTD 397
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + R+ G + R + +V+ + + +
Sbjct: 398 TFLFHYNFPPYSVGETGMVGSPKRREIGHGRL----AKRGVLAVMPDMDKFPYTVRVVSE 453
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ GA +AL D ++ + V +G + +
Sbjct: 454 ITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLSD---------I 504
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D + G I +Q + +++ LN AK ++ + +
Sbjct: 505 LGDEDHLGDMDFKVAGSRDG-ISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQA 563
Query: 238 IS 239
I+
Sbjct: 564 IN 565
Score = 95.7 bits (236), Expect = 5e-18, Method: Composition-based stats.
Identities = 37/232 (15%), Positives = 76/232 (32%), Gaps = 27/232 (11%)
Query: 14 ISLTRRV-SKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----HGWITAEYGMLPR 68
++L + ++ A + +V DT + T ++K + T G +P
Sbjct: 39 VTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVNYQERTYAAGRIPG 98
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
S R GR I R+I R +R + + Q+I +
Sbjct: 99 SFFRR------EGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVNPDIV 152
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+ GA A G + A G + +++ E +D
Sbjct: 153 AMIGASAA-------------LSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLD 199
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
T++ ++ V+ AE S+D + ++ +I+ +++
Sbjct: 200 LVVAGTEA-AVLMVESEAEL--LSEDQMLGAVVFGHEQQQVVIQNINELVKE 248
>gi|37528344|ref|NP_931689.1| polynucleotide phosphorylase/polyadenylase [Photorhabdus
luminescens subsp. laumondii TTO1]
gi|81418115|sp|Q7MYZ0|PNP_PHOLL RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|36787782|emb|CAE16897.1| polyribonucleotide nucleotidyltransferase (polynucleotide
phosphorylase) (PNPase) (CAP87K) [Photorhabdus
luminescens subsp. laumondii TTO1]
Length = 709
Score = 145 bits (366), Expect = 4e-33, Method: Composition-based stats.
Identities = 43/243 (17%), Positives = 93/243 (38%), Gaps = 18/243 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR+++ +R + + V GS L G+T L TATL + ++ + +
Sbjct: 315 RIDGREKDMVRALDVRTGVLPRTHGSALFTRGETQALVTATLGTERDAQIIDELMGERTD 374
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + R+ G + R + +V+ + + + +
Sbjct: 375 RFLLHYNFPPYSVGETGMMGSPKRREIGHGRL----AKRGVAAVMPKANEFPYTVRVVSE 430
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ GA +AL D ++ + V + + +
Sbjct: 431 ITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEDDNFVVLSD---------I 481
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D + G I +Q + +++ LN AK ++ + +
Sbjct: 482 LGDEDHLGDMDFKVAGSCEG-ISALQMDIKIEGITREIMQIALNQAKGARLHILSVMEQA 540
Query: 238 ISN 240
I++
Sbjct: 541 INS 543
Score = 87.2 bits (214), Expect = 2e-15, Method: Composition-based stats.
Identities = 36/233 (15%), Positives = 76/233 (32%), Gaps = 28/233 (12%)
Query: 14 ISLTRRV-SKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----HGWITAEYGMLPR 68
+++ + ++ A + +V DT + T ++KV + T G +P
Sbjct: 16 VAIETGMMARQATAAVMVNMDDTAVFVTVVGQKKVKEGQDFFPLTVNYQERTYAAGRVPG 75
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
S R GR G + R+I R LR + L QI+ +
Sbjct: 76 SFFRR------EGRPGEGETLVARLIDRPLRPLFPDGFLNEVQIVATVVSVNPQVNPDIV 129
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+ G + G + A G + +++ E +D
Sbjct: 130 AMIG-------------ASAVLALSGIPFNGPIGAARVGYINDQYVLNPTSDELKNSRLD 176
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
T +G ++ V+ A+ +++ + ++ +I ++ E
Sbjct: 177 LVVSGT-AGAVLMVESEADI--LTEEQMLGAVVFGHEQQQVVIDNIN-ALAAE 225
>gi|262384733|ref|ZP_06077866.1| polyribonucleotide nucleotidyltransferase [Bacteroides sp. 2_1_33B]
gi|262293714|gb|EEY81649.1| polyribonucleotide nucleotidyltransferase [Bacteroides sp. 2_1_33B]
Length = 746
Score = 145 bits (366), Expect = 4e-33, Method: Composition-based stats.
Identities = 49/240 (20%), Positives = 87/240 (36%), Gaps = 18/240 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
RL GR+ ++R I + GS + G+T L+T TL +EK+ + N +
Sbjct: 319 RLDGRKTTEIRPIWIETDCLPGPHGSAIFTRGETQSLSTVTLGTKSDEKMIDDVLNHGYE 378
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P STG V R+ G RAL+ ++ + ++I D
Sbjct: 379 RFLLHYNFPPFSTGEAKATRGVGRREIGHGNL----AHRALKRMIPDNYPYVVRVISDIL 434
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+++G + A + +AL D M+ + + + + + D+
Sbjct: 435 --ESNGSSSMATVCAGTLALRDAGVPMKKPVSGIAMGLISE-------NKGTNYAILSDI 485
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T G I Q + S + L AK+ ++ +
Sbjct: 486 LGDEDHLGDMDFKVTGTKDG-ITATQMDIKVDGLSYEILENALAQAKEGRMHILGKILEA 544
Score = 97.6 bits (241), Expect = 1e-18, Method: Composition-based stats.
Identities = 35/230 (15%), Positives = 66/230 (28%), Gaps = 19/230 (8%)
Query: 8 ENQMREISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGML 66
R I++ ++K A+G+ V+ +T LL T + + E
Sbjct: 11 LGDGRTITIETGKLAKQADGAVTVRMNNTVLLATVCAAKDANPGVDFMPLQVEYKEKYSA 70
Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
G+ R++ RALR + +
Sbjct: 71 FGRFP--GGFTKREGKASDYEILTSRLVDRALRPLFPDNYHAEVY-------------VN 115
Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
+ L D L + + G ++ + G IV+ E D
Sbjct: 116 IILFSADGEDLPDALAGLAASAALAVSDIPFNGPISEVRVARTDGKYIVNPTSAELEKAD 175
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+D T +I+ V+ E + + +A + I K Q +
Sbjct: 176 IDIMVAATID-NIMMVE--GEMNEVQESEMLEAIKVAHEAIKVQCKAQLE 222
>gi|125599245|gb|EAZ38821.1| hypothetical protein OsJ_23227 [Oryza sativa Japonica Group]
Length = 778
Score = 145 bits (366), Expect = 4e-33, Method: Composition-based stats.
Identities = 45/241 (18%), Positives = 86/241 (35%), Gaps = 13/241 (5%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEE-----KVPMWIRNTKH 56
R GR ++R I+ + A GS L G+T L TL + ++ + +
Sbjct: 324 RSDGRSPCELRPINSQCGLLPRAHGSALFTRGETQALAVVTLGDYQMAQRIDNLVDTEES 383
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
+Y P S G + A + R+ G RAL ++ I ++
Sbjct: 384 KSFYLQYTFPPSSVGEVGRIGAPNRREIGHGML----AERALEPILPPEEDFPYTIRVES 439
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+ +++G + A++ G +AL D ++ + VL G + D
Sbjct: 440 TITESNGSSSMASVCGGCLALQDAGVPIKFPVAGIAMGLVLDTLEFG---GDGKPLILSD 496
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED++ D+D ++G I Q + + L A+D ++
Sbjct: 497 ITGAEDASGDMDFKVAGNENG-ISAFQMDIKVVGITLPIMEHALLQARDGRKHILNEMSK 555
Query: 237 V 237
Sbjct: 556 C 556
Score = 69.5 bits (168), Expect = 4e-10, Method: Composition-based stats.
Identities = 25/152 (16%), Positives = 52/152 (34%), Gaps = 3/152 (1%)
Query: 84 GGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVALHDCLQH 143
G + + R+I R LR + QI+ + AIT A VA+ C
Sbjct: 33 DGETVLVCRLIDRPLRPTMPKGFYYETQILSWVFSYDGIHSPDSLAITAAGVAICSCSYL 92
Query: 144 MEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQ 203
+ + K +A + GM+ +V+ + ++D T I+ ++
Sbjct: 93 PQSFLCRALSEVPNKQTIAGVRVGMINDQFVVNPTTEQMDDSELDLVMAGT-DSAILMIE 151
Query: 204 GSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
+++ + + I ++ K
Sbjct: 152 --GYCDFLTEEKLLQAVETGQGAIREICKAID 181
>gi|165975991|ref|YP_001651584.1| polynucleotide phosphorylase/polyadenylase [Actinobacillus
pleuropneumoniae serovar 3 str. JL03]
gi|226702591|sp|B0BUD5|PNP_ACTPJ RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|165876092|gb|ABY69140.1| polyribonucleotide nucleotidyltransferase [Actinobacillus
pleuropneumoniae serovar 3 str. JL03]
Length = 715
Score = 145 bits (366), Expect = 4e-33, Method: Composition-based stats.
Identities = 42/241 (17%), Positives = 88/241 (36%), Gaps = 18/241 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR + +R + + V GS + G+T L ATL + ++ + K
Sbjct: 314 RIDGRTVDTVRALDICTGVLPRTHGSAIFTRGETQALAVATLGTERDAQIIDELTGEKSD 373
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + + R+ G + R + +V+ + + + +
Sbjct: 374 RFLFHYNFPPYSVGETGRIGSPKRREIGHGRL----AKRGVLAVMPTAEEFPYVVRVVSE 429
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ GA +AL D ++ + V + + +
Sbjct: 430 ITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEEEKFVVLSD---------I 480
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T G + +Q + + + LN AK ++ + +
Sbjct: 481 LGDEDHLGDMDFKVAGTREG-VTALQMDIKIEGITPEIMQIALNQAKGARMHILSVMEQA 539
Query: 238 I 238
I
Sbjct: 540 I 540
Score = 91.8 bits (226), Expect = 7e-17, Method: Composition-based stats.
Identities = 34/232 (14%), Positives = 72/232 (31%), Gaps = 27/232 (11%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT----KHGWITAEYGMLPR 68
++L +++ A + + DT + T +++V + T G +P
Sbjct: 15 VTLETGAIARQATAAVMASMDDTTVFVTVVAKKEVKEGQDFFPLTVDYQERTYAAGRIPG 74
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
R GR I R+I R +R + Q+I +
Sbjct: 75 GFFKR------EGRPSEGETLIARLIDRPVRPLFPEGFFNEIQVIATVVSVNPQISPDLV 128
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+ GA A G + A G + +++ E +D
Sbjct: 129 AMIGASAA-------------LSLSGVPFNGPIGAARVGFINDQFVLNPTTSEQKISRLD 175
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
T ++ V+ A+ S++ + + + +I+ K+ +
Sbjct: 176 LVVAGT-DKAVLMVESEADI--LSEEQMLSAVVFGHQQQQVVIENIKEFVKE 224
>gi|150009352|ref|YP_001304095.1| polynucleotide phosphorylase/polyadenylase [Parabacteroides
distasonis ATCC 8503]
gi|255016204|ref|ZP_05288330.1| polynucleotide phosphorylase/polyadenylase [Bacteroides sp. 2_1_7]
gi|256842357|ref|ZP_05547860.1| polyribonucleotide nucleotidyltransferase [Parabacteroides sp. D13]
gi|187610323|sp|A6LFK9|PNP_PARD8 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|149937776|gb|ABR44473.1| polyribonucleotide nucleotidyltransferase [Parabacteroides
distasonis ATCC 8503]
gi|256735964|gb|EEU49295.1| polyribonucleotide nucleotidyltransferase [Parabacteroides sp. D13]
Length = 746
Score = 145 bits (366), Expect = 4e-33, Method: Composition-based stats.
Identities = 49/240 (20%), Positives = 87/240 (36%), Gaps = 18/240 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
RL GR+ ++R I + GS + G+T L+T TL +EK+ + N +
Sbjct: 319 RLDGRKTTEIRPIWIETDCLPGPHGSAIFTRGETQSLSTVTLGTKSDEKMIDDVLNHGYE 378
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P STG V R+ G RAL+ ++ + ++I D
Sbjct: 379 RFLLHYNFPPFSTGEAKATRGVGRREIGHGNL----AHRALKRMIPDNYPYVVRVISDIL 434
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+++G + A + +AL D M+ + + + + + D+
Sbjct: 435 --ESNGSSSMATVCAGTLALRDAGVPMKKPVSGIAMGLISE-------NKGTNYAILSDI 485
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T G I Q + S + L AK+ ++ +
Sbjct: 486 LGDEDHLGDMDFKVTGTKDG-ITATQMDIKVDGLSYEILENALAQAKEGRMHILGKILEA 544
Score = 97.6 bits (241), Expect = 1e-18, Method: Composition-based stats.
Identities = 35/230 (15%), Positives = 66/230 (28%), Gaps = 19/230 (8%)
Query: 8 ENQMREISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGML 66
R I++ ++K A+G+ V+ +T LL T + + E
Sbjct: 11 LGDGRTITIETGKLAKQADGAVTVRMNNTVLLATVCAAKDANPGVDFMPLQVEYKEKYSA 70
Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
G+ R++ RALR + +
Sbjct: 71 FGRFP--GGFTKREGKASDYEILTSRLVDRALRPLFPDNYHAEVY-------------VN 115
Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
+ L D L + + G ++ + G IV+ E D
Sbjct: 116 IILFSADGEDLPDALAGLAASAALAVSDIPFNGPISEVRVARTDGKYIVNPTSAELEKAD 175
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+D T +I+ V+ E + + +A + I K Q +
Sbjct: 176 IDIMVAATID-NIMMVE--GEMNEVQESEMLEAIKVAHEAIKVQCKAQLE 222
>gi|269215563|ref|ZP_06159417.1| polyribonucleotide nucleotidyltransferase [Slackia exigua ATCC
700122]
gi|269131050|gb|EEZ62125.1| polyribonucleotide nucleotidyltransferase [Slackia exigua ATCC
700122]
Length = 769
Score = 145 bits (366), Expect = 4e-33, Method: Composition-based stats.
Identities = 48/242 (19%), Positives = 87/242 (35%), Gaps = 18/242 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R GR ++R + + GS L + G T +++ ATL E + I
Sbjct: 345 RADGRAPEEIRPLYIRPGYLPRVHGSGLFQRGQTQVMSVATLGLLNEAQRLDTIDPQTTR 404
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
+Y P TG + A R+ G RA+ V+ I + +
Sbjct: 405 RYMHQYNFPPYCTGEVGRMGAPKRREVGHGAL----AERAILPVLPNEDEFPYSIRVVSE 460
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
V++++G + A+ G+ +AL D ++ + + + + I +
Sbjct: 461 VLESNGSSSMASTCGSCLALMDAGVPIKAPVSGVAMGLIKEDDGVVILSD---------I 511
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T G I +Q + S + L AK+ A ++ D
Sbjct: 512 QGLEDFLGDMDFKVTGTPEG-ITALQMDNKARGLSTEILGRALAQAKEGRAHILSAMLDE 570
Query: 238 IS 239
I+
Sbjct: 571 IA 572
Score = 84.9 bits (208), Expect = 9e-15, Method: Composition-based stats.
Identities = 41/228 (17%), Positives = 76/228 (33%), Gaps = 24/228 (10%)
Query: 16 LTRR-VSKYAEGSCLVKFGDTHLLTTATL---EEKVPMWIRNTKHGWITAEYGMLPRSTG 71
++K A G+ LV+ G+T +L T+ + E+ + G +P
Sbjct: 47 FETGELAKQATGAVLVRQGETTVLVTSVISKEEKDYDFFPLTVDFMEKMYAVGRIPGGYL 106
Query: 72 NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAIT 131
R GR + RM+ R +R ++ I + +
Sbjct: 107 KR------EGRASDKGTLTARMVDRPIRPGFAEGFKQEVHVVATTFAIDGENAPDCMCVG 160
Query: 132 GAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANF 191
GA AL + I+ IV+ Y E T D++
Sbjct: 161 GASAALLIASAPFDGPVA-----------CVRIARNAETREFIVNPTYAEQETSDLELTI 209
Query: 192 VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
T +I V+ A++ ++ A +N ++ IA + Q + +S
Sbjct: 210 AGTKD-YISMVEAGADQVG--EEDMLAAMNFGQEAIAAFCEKQAEFLS 254
>gi|229104369|ref|ZP_04235038.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus
Rock3-28]
gi|228679067|gb|EEL33275.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus
Rock3-28]
Length = 712
Score = 145 bits (366), Expect = 4e-33, Method: Composition-based stats.
Identities = 44/244 (18%), Positives = 85/244 (34%), Gaps = 18/244 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56
+R GR+ +++R ++ + GS L G T L+ T + ++ + +
Sbjct: 315 IRPDGRKGDEIRPLASEVGILSRTHGSGLFTRGQTQALSICTLGALGDVQILDGLGVEES 374
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y S G R+ G RAL V+ + +
Sbjct: 375 KRFMHHYNFPSFSVGETRPMRGPGRREIGHGALG----ERALEPVIPSEKDFPYTVRLVS 430
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V++++G T A+I G+ +A+ D ++ + V G + D
Sbjct: 431 EVLESNGSTSQASICGSTLAMMDAGVPLKAPVAGIAMGLVKSGE---------HYTILSD 481
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T G + +Q + S++ L AK ++
Sbjct: 482 IQGMEDHLGDMDFKVAGTAQG-VTALQMDIKIDGLSREILEEALQQAKVGRVHILNHMLS 540
Query: 237 VISN 240
VI+
Sbjct: 541 VIAE 544
Score = 114 bits (285), Expect = 1e-23, Method: Composition-based stats.
Identities = 43/231 (18%), Positives = 90/231 (38%), Gaps = 26/231 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEK---VPMWIRNTKHGWITAEYGMLP 67
R++++ ++K A G+ LV++GDT +L+TAT ++ V + + G +P
Sbjct: 15 RQLTVETGQLAKQANGAVLVRYGDTAVLSTATASKEAKNVDFFPLTVNYEERLYAVGKIP 74
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R GR ++ R+I R +R + Q++ + D +
Sbjct: 75 GGFIKR------EGRPSEKAILASRLIDRPIRPLFADGFRNEVQVVSIVMSVDQDCSSEM 128
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
AA+ G+ +A +G +A + G + G +++ + D+
Sbjct: 129 AAMLGSSLA-------------LSISDIPFEGPIAGATVGRINGEFVINPTVEQQEQSDI 175
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
T I V+ A++ ++ + D I LI Q++++
Sbjct: 176 HLVVAGTKD-AINMVEAGADQVP--EETMLEAIMFGHDEIKRLIAFQEEIV 223
>gi|119504363|ref|ZP_01626443.1| Polyribonucleotide nucleotidyltransferase [marine gamma
proteobacterium HTCC2080]
gi|119459871|gb|EAW40966.1| Polyribonucleotide nucleotidyltransferase [marine gamma
proteobacterium HTCC2080]
Length = 714
Score = 145 bits (366), Expect = 4e-33, Method: Composition-based stats.
Identities = 40/242 (16%), Positives = 82/242 (33%), Gaps = 18/242 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +R I V A GS L G+T + TL + ++ + +
Sbjct: 314 RIDGRDGRTVRPIVCEVDVLDKAHGSALFTRGETQAIGAVTLGSSRDAQIIDALEGERRD 373
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + S R+ G + R L + + + + +
Sbjct: 374 PFMLHYNFPPYSVGEAGRIGFTSRREIGHGRL----ARRGLAATLPTEEEFPYTVRVVSE 429
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ +A+ ++ + V +G+ A+ +
Sbjct: 430 ITESNGSSSMASVCVGSLAMMAAGVPVKAPVAGIAMGLVKEGNQFAVLTD---------I 480
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T G I +Q + ++ L A ++ V
Sbjct: 481 LGDEDHLGDMDFKVAGTS-GGITALQMDIKIEGINEQIMEIALEQAMQARLHILGQMNSV 539
Query: 238 IS 239
++
Sbjct: 540 LA 541
Score = 115 bits (288), Expect = 4e-24, Method: Composition-based stats.
Identities = 34/234 (14%), Positives = 73/234 (31%), Gaps = 28/234 (11%)
Query: 13 EISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT----KHGWITAEYGMLP 67
EI+L +++ A G+ +V G+T +L T ++ + G +P
Sbjct: 14 EITLETGRIARQASGAVMVTMGNTSVLCTVVAAREMRAGQDFFPLSVHYIEKRYAVGKIP 73
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R R + R+I R +R + + Q++ ++
Sbjct: 74 GGFFKR------EARPSEKETLTSRLIDRPVRPLFPNGFMNEVQVVCTVMSADSETDPDI 127
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY-PIVDLDYGEDSTID 186
A+ G A G + G +++ +Y
Sbjct: 128 PAMIGTSAA-------------LAISGCPFNGPIGGARVGFTEAKGYLLNPNYSALKNSQ 174
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
+D T ++ V+ A+ S+D + A + +IK +++
Sbjct: 175 LDMVVAGTSE-AVLMVESEAQE--LSEDQMLGAVLFAHQEMQTVIKAISELVEE 225
>gi|229168546|ref|ZP_04296269.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus AH621]
gi|228614952|gb|EEK72054.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus AH621]
Length = 717
Score = 145 bits (366), Expect = 4e-33, Method: Composition-based stats.
Identities = 44/244 (18%), Positives = 85/244 (34%), Gaps = 18/244 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56
+R GR+ +++R ++ + GS L G T L+ T + ++ + +
Sbjct: 315 IRPDGRKGDEIRPLASEVGILSRTHGSGLFTRGQTQALSICTLGALGDVQILDGLGVEES 374
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y S G R+ G RAL V+ + +
Sbjct: 375 KRFMHHYNFPSFSVGETRPMRGPGRREIGHGALG----ERALEPVLPSEKDFPYTVRLVS 430
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V++++G T A+I G+ +A+ D ++ + V G + D
Sbjct: 431 EVLESNGSTSQASICGSTLAMMDAGVPLKAPVAGIAMGLVKSGE---------HYTILSD 481
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T G + +Q + S++ L AK ++
Sbjct: 482 IQGMEDHLGDMDFKVAGTAKG-VTALQMDIKIDGLSREILEEALQQAKIGRVHILNHMLS 540
Query: 237 VISN 240
VI+
Sbjct: 541 VIAE 544
Score = 113 bits (282), Expect = 2e-23, Method: Composition-based stats.
Identities = 43/231 (18%), Positives = 89/231 (38%), Gaps = 26/231 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATL---EEKVPMWIRNTKHGWITAEYGMLP 67
R++++ ++K A G+ LV++GDT +L+TAT + V + + G +P
Sbjct: 15 RQLTIETSQLAKQANGAVLVRYGDTAVLSTATASKEPKNVDFFPLTVNYEERLYAVGKIP 74
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R GR ++ R+I R +R + Q++ + D +
Sbjct: 75 GGFIKR------EGRPSEKAILASRLIDRPIRPLFADGFRNEVQVVSIVMSVDQDCSSEM 128
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
AA+ G+ +A +G +A + G + G +++ + D+
Sbjct: 129 AAMLGSSLA-------------LSISDIPFEGPIAGATVGRINGEFVINPTVEQQEQSDI 175
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
T I V+ A++ ++ + D I LI Q++++
Sbjct: 176 HLVVAGTKD-AINMVEAGADQVP--EETMLEAIMFGHDEIKRLIAFQEEIV 223
>gi|190149890|ref|YP_001968415.1| polyribonucleotide nucleotidyltransferase [Actinobacillus
pleuropneumoniae serovar 7 str. AP76]
gi|189915021|gb|ACE61273.1| polyribonucleotide nucleotidyltransferase [Actinobacillus
pleuropneumoniae serovar 7 str. AP76]
Length = 685
Score = 145 bits (366), Expect = 4e-33, Method: Composition-based stats.
Identities = 42/241 (17%), Positives = 88/241 (36%), Gaps = 18/241 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR + +R + + V GS + G+T L ATL + ++ + K
Sbjct: 284 RIDGRTVDTVRALDICTGVLPRTHGSAIFTRGETQALAVATLGTERDAQIIDELTGEKSD 343
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + + R+ G + R + +V+ + + + +
Sbjct: 344 RFLFHYNFPPYSVGETGRIGSPKRREIGHGRL----AKRGVLAVMPTAEEFPYVVRVVSE 399
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ GA +AL D ++ + V + + +
Sbjct: 400 ITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEEEKFVVLSD---------I 450
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T G + +Q + + + LN AK ++ + +
Sbjct: 451 LGDEDHLGDMDFKVAGTREG-VTALQMDIKIEGITPEIMQIALNQAKGARMHILSVMEQA 509
Query: 238 I 238
I
Sbjct: 510 I 510
Score = 77.6 bits (189), Expect = 2e-12, Method: Composition-based stats.
Identities = 32/216 (14%), Positives = 64/216 (29%), Gaps = 26/216 (12%)
Query: 29 LVKFGDTHLLTTATLEEKVPMWIRNT----KHGWITAEYGMLPRSTGNRVKREAVSGRQG 84
+ DT + T +++V + T G +P R GR
Sbjct: 1 MASMDDTTVFVTVVAKKEVKEGQDFFPLTVDYQERTYAAGRIPGGFFKR------EGRPS 54
Query: 85 GRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHM 144
I R+I R +R + Q+I + A+ GA A
Sbjct: 55 EGETLIARLIDRPVRPLFPEGFFNEIQVIATVVSVNPQISPDLVAMIGASAA-------- 106
Query: 145 EDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQG 204
G + A G + +++ E +D T ++ V+
Sbjct: 107 -----LSLSGVPFNGPIGAARVGFINDQFVLNPTTSEQKISRLDLVVAGT-DKAVLMVES 160
Query: 205 SAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
A+ S++ + + + +I+ K+ +
Sbjct: 161 EADI--LSEEQMLSAVVFGHQQQQVVIENIKEFVKE 194
>gi|26249747|ref|NP_755787.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli
CFT073]
gi|91212585|ref|YP_542571.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli UTI89]
gi|26110175|gb|AAN82361.1|AE016767_121 Polyribonucleotide nucleotidyltransferase [Escherichia coli CFT073]
gi|91074159|gb|ABE09040.1| polyribonucleotide nucleotidyltransferase [Escherichia coli UTI89]
Length = 740
Score = 145 bits (366), Expect = 4e-33, Method: Composition-based stats.
Identities = 45/242 (18%), Positives = 92/242 (38%), Gaps = 18/242 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR+++ +R + + V GS L G+T L TATL + +V + +
Sbjct: 344 RIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVLDELMGERTD 403
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + R+ G + R + +V+ + + +
Sbjct: 404 TFLFHYNFPPYSVGETGMVGSPKRREIGHGRL----AKRGVLAVMPDMDKFPYTVRVVSE 459
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ GA +AL D ++ + V +G + +
Sbjct: 460 ITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLSD---------I 510
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D + G I +Q + +++ LN AK ++ + +
Sbjct: 511 LGDEDHLGDMDFKVAGSRDG-ISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQA 569
Query: 238 IS 239
I+
Sbjct: 570 IN 571
Score = 95.7 bits (236), Expect = 5e-18, Method: Composition-based stats.
Identities = 37/232 (15%), Positives = 76/232 (32%), Gaps = 27/232 (11%)
Query: 14 ISLTRRV-SKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----HGWITAEYGMLPR 68
++L + ++ A + +V DT + T ++K + T G +P
Sbjct: 45 VTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVNYQERTYAAGRIPG 104
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
S R GR I R+I R +R + + Q+I +
Sbjct: 105 SFFRR------EGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVNPDIV 158
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+ GA A G + A G + +++ E +D
Sbjct: 159 AMIGASAA-------------LSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLD 205
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
T++ ++ V+ AE S+D + ++ +I+ +++
Sbjct: 206 LVVAGTEA-AVLMVESEAEL--LSEDQMLGAVVFGHEQQQVVIQNINELVKE 254
>gi|312972565|ref|ZP_07786738.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
1827-70]
gi|310332507|gb|EFP99720.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
1827-70]
Length = 595
Score = 145 bits (366), Expect = 4e-33, Method: Composition-based stats.
Identities = 45/242 (18%), Positives = 92/242 (38%), Gaps = 18/242 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR+++ +R + + V GS L G+T L TATL + +V + +
Sbjct: 199 RIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVLDELMGERTD 258
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + R+ G + R + +V+ + + +
Sbjct: 259 TFLFHYNFPPYSVGETGMVGSPKRREIGHGRL----AKRGVLAVMPDMDKFPYTVRVVSE 314
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ GA +AL D ++ + V +G + +
Sbjct: 315 ITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLSD---------I 365
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D + G I +Q + +++ LN AK ++ + +
Sbjct: 366 LGDEDHLGDMDFKVAGSRDG-ISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQA 424
Query: 238 IS 239
I+
Sbjct: 425 IN 426
Score = 48.7 bits (114), Expect = 7e-04, Method: Composition-based stats.
Identities = 12/95 (12%), Positives = 33/95 (34%), Gaps = 3/95 (3%)
Query: 146 DCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGS 205
+ G + A G + +++ E +D T++ ++ V+
Sbjct: 18 ASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVAGTEA-AVLMVESE 76
Query: 206 AERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
AE S+D + ++ +I+ +++
Sbjct: 77 AEL--LSEDQMLGAVVFGHEQQQVVIQNINELVKE 109
>gi|257066122|ref|YP_003152378.1| Polyribonucleotide nucleotidyltransferase [Anaerococcus prevotii
DSM 20548]
gi|256798002|gb|ACV28657.1| Polyribonucleotide nucleotidyltransferase [Anaerococcus prevotii
DSM 20548]
Length = 711
Score = 145 bits (366), Expect = 4e-33, Method: Composition-based stats.
Identities = 45/245 (18%), Positives = 85/245 (34%), Gaps = 19/245 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWI-----RNTK 55
+R GR ++R +S + GS L + G T +L+ TL + I R
Sbjct: 311 IRPDGRDLTEIRPLSAEAGLLPRVHGSGLFQRGQTQVLSVVTLGSPADVQIIDGLNREEI 370
Query: 56 HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115
+Y P G+ R+ G + RAL V+ I +
Sbjct: 371 QKRYIHQYNFPPFCVGDVRPLRGPGRREIGHGRL----AERALLPVLPDEKDFPYTIRVV 426
Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIV 175
+V+ ++G + A+I G+ ++L D + + + + +I
Sbjct: 427 SEVLSSNGSSSQASICGSTLSLMDAGVPITKPVAGIAMGLIKEDDSISILTD-------- 478
Query: 176 DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
+ ED D+D T G I +Q + +++ LN A ++ + +
Sbjct: 479 -IQGLEDHLGDMDFKVAGTRDG-ITALQMDMKIDGITREVLEESLNDAHSARMRILDVIE 536
Query: 236 DVISN 240
I
Sbjct: 537 SAIEK 541
Score = 86.4 bits (212), Expect = 3e-15, Method: Composition-based stats.
Identities = 45/239 (18%), Positives = 77/239 (32%), Gaps = 31/239 (12%)
Query: 13 EISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEK----VPMWIRNTKHGWITAEYGMLP 67
+ +T ++ A G C +K GDT LL TA EK + + G +P
Sbjct: 14 DFEITIGKFAEQANGECYIKSGDTSLLVTAVASEKPREGIDFFPLICDFQEKLYAVGKIP 73
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R G+ + I R + R LR + + QII + D
Sbjct: 74 GGFLKR------EGKASDEATLISRQMDRPLRPLFPENYYNDVQIIATVLSMDEDNLPDP 127
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
GA +A G V A G + I++ + E +
Sbjct: 128 LTTIGASIA-------------LGISDIPFDGPVGACMVGKVGDKLIINPNKEEREKSSL 174
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI----SNEV 242
+ G I V+ A+ S+ + LA + I ++ + +I ++
Sbjct: 175 ELTVAG-KKGAINMVEAGAKE--ISEGEMLEAMLLALEEIGNISDFIQTIIDDIGKEKI 230
>gi|332280005|ref|ZP_08392418.1| polyribonucleotide nucleotidyltransferase [Shigella sp. D9]
gi|332102357|gb|EGJ05703.1| polyribonucleotide nucleotidyltransferase [Shigella sp. D9]
Length = 740
Score = 145 bits (366), Expect = 4e-33, Method: Composition-based stats.
Identities = 45/242 (18%), Positives = 92/242 (38%), Gaps = 18/242 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR+++ +R + + V GS L G+T L TATL + +V + +
Sbjct: 344 RIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVLDELMGERTD 403
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + R+ G + R + +V+ + + +
Sbjct: 404 TFLFHYNFPPYSVGETGMVGSPKRREIGHGRL----AKRGVLAVMPDMDKFPYTVRVVSE 459
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ GA +AL D ++ + V +G + +
Sbjct: 460 ITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLSD---------I 510
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D + G I +Q + +++ LN AK ++ + +
Sbjct: 511 LGDEDHLGDMDFKVAGSRDG-ISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQA 569
Query: 238 IS 239
I+
Sbjct: 570 IN 571
Score = 95.7 bits (236), Expect = 5e-18, Method: Composition-based stats.
Identities = 37/232 (15%), Positives = 76/232 (32%), Gaps = 27/232 (11%)
Query: 14 ISLTRRV-SKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----HGWITAEYGMLPR 68
++L + ++ A + +V DT + T ++K + T G +P
Sbjct: 45 VTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVNYQERTYAAGRIPG 104
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
S R GR I R+I R +R + + Q+I +
Sbjct: 105 SFFRR------EGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVNPDIV 158
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+ GA A G + A G + +++ E +D
Sbjct: 159 AMIGASAA-------------LSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLD 205
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
T++ ++ V+ AE S+D + ++ +I+ +++
Sbjct: 206 LVVAGTEA-AVLMVESEAEL--LSEDQMLGAVVFGHEQQQVVIQNINELVKE 254
>gi|282878811|ref|ZP_06287578.1| polyribonucleotide nucleotidyltransferase [Prevotella buccalis ATCC
35310]
gi|281299019|gb|EFA91421.1| polyribonucleotide nucleotidyltransferase [Prevotella buccalis ATCC
35310]
Length = 778
Score = 145 bits (366), Expect = 4e-33, Method: Composition-based stats.
Identities = 46/243 (18%), Positives = 85/243 (34%), Gaps = 18/243 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHG 57
RL GR+ +++R I GS + G+T L+T T L+EK+ + + +
Sbjct: 325 RLDGRRTDEIRPIWCEVSPLPMPHGSAIFTRGETQSLSTCTLGTKLDEKMVDDVLDKSYQ 384
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P STG + V R+ G R + L + +
Sbjct: 385 RFLLHYNFPPFSTGEAKAQRGVGRREIGHGHLAWRGLKGQLP------DDFPYTVRLVSQ 438
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+++++G + A + +AL D M+ + + + G + D+
Sbjct: 439 ILESNGSSSMATVCAGTLALMDAGVPMKKPVSGIAMGLIKN-------PGEDKYAVLSDI 491
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T G + Q + S + L AK ++ +
Sbjct: 492 LGDEDHLGDMDFKTTGTRDG-LTATQMDIKCDGLSFEILEKALLQAKAGREHILNKMLET 550
Query: 238 ISN 240
I+
Sbjct: 551 IAE 553
Score = 109 bits (271), Expect = 5e-22, Method: Composition-based stats.
Identities = 38/241 (15%), Positives = 77/241 (31%), Gaps = 26/241 (10%)
Query: 3 LSGRQENQMREISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
GR IS+ V+K A+GS +V+ G+T LL T +
Sbjct: 11 PDGRT------ISIETGKVAKQADGSAVVRLGNTVLLATVCAAKDAVPGTDFMPLQVDYR 64
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
E G+ R++ RALR + +
Sbjct: 65 EQYSAAGRFP--GGFTKREGKPSDNEILTSRLVDRALRPLFPSNYHAEVY---------- 112
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
+ ++ V D L + + +++ + + G +++ + +
Sbjct: 113 ---VQIMLLSADGVDQPDALAGLAASAAMACSDIPFDFYISEVRVARINGEYVINPTFEQ 169
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
D+D T +I+ V+ E S+ L A + I + +Q + ++ E
Sbjct: 170 MKQADMDLMVGATKD-NIMMVE--GEMKEVSELDLINALKAAHEAIKPMCAVQDE-LNKE 225
Query: 242 V 242
+
Sbjct: 226 L 226
>gi|260905182|ref|ZP_05913504.1| polynucleotide phosphorylase/polyadenylase [Brevibacterium linens
BL2]
Length = 740
Score = 145 bits (366), Expect = 4e-33, Method: Composition-based stats.
Identities = 44/243 (18%), Positives = 84/243 (34%), Gaps = 12/243 (4%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKH 56
+R+ GR +R ++ V A GS + + G+T +L TL E+ +
Sbjct: 337 IRIDGRGLKDIRPLTAETNVIPRAHGSAIFERGETQILGVTTLNMLKLEQHIDSLSPVTT 396
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P S G + + R+ G RAL V+ I
Sbjct: 397 KRYMHHYNFPPYSVGETGRVGSPKRREIGHGAL----AERALVPVLPKREDFPYAIREVS 452
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIV- 175
+ + ++G T ++ + +A+ ++ + V V + G Y +
Sbjct: 453 EALGSNGSTSMGSVCASTLAMLSAGVPLQAPVAGIAMGLV--SDVISTDTGDQTAYAALT 510
Query: 176 DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
D+ ED+ D+D T I +Q + A L A++ ++ +
Sbjct: 511 DILGAEDAFGDMDFKVAGTRDF-ITAIQLDTKLDGLPASVLGAALKQAQEARMVILDVIA 569
Query: 236 DVI 238
+ I
Sbjct: 570 EAI 572
Score = 70.6 bits (171), Expect = 2e-10, Method: Composition-based stats.
Identities = 35/242 (14%), Positives = 70/242 (28%), Gaps = 38/242 (15%)
Query: 14 ISLTRR-VSKYAEGSCLVKFG-DTHLLTTATLE----EKVPMWIRNTKHGWITAEYGMLP 67
I +++ A GS + +T L + + E + G +P
Sbjct: 22 IRFETGRLAQQAAGSAVAYLDDETMLFSATSAGKNPREGFDFFPLTVDVEERMYAAGRIP 81
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
S R GR + R+I R LR Q+++ I D
Sbjct: 82 GSFFRR------EGRPSTDAVLTCRLIDRPLRPSFVKGLRNEVQVVVTVMSIHPDHIYDA 135
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
AI A ++ G + + ++ + ++ +
Sbjct: 136 LAINAASMSTQ-------------LSGLPFSGPIGGVRIALIDDQWVAFPNHSQLDDAVF 182
Query: 188 DANFVM---TDSGHIVEVQGSAERATF----------SQDHFFAMLNLAKDRIADLIKLQ 234
+ D I+ V+ A +++ L AK I++L + Q
Sbjct: 183 NMVVAGRVVGDDVAIMMVEAEATDNAIDRIKTGATAPTEEVVAEGLEAAKPFISELCRAQ 242
Query: 235 KD 236
++
Sbjct: 243 QE 244
>gi|325103803|ref|YP_004273457.1| polyribonucleotide nucleotidyltransferase [Pedobacter saltans DSM
12145]
gi|324972651|gb|ADY51635.1| polyribonucleotide nucleotidyltransferase [Pedobacter saltans DSM
12145]
Length = 732
Score = 145 bits (366), Expect = 4e-33, Method: Composition-based stats.
Identities = 52/244 (21%), Positives = 86/244 (35%), Gaps = 16/244 (6%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
+RL GR Q+R I A GS + G+T LTT TL +E++ + +
Sbjct: 318 VRLDGRNSKQIRPIWSEVDYLPSAHGSSIFTRGETQSLTTVTLGSNDDEQMIDGAFISGY 377
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y STG V R+ G RA++ V+ I +
Sbjct: 378 NRFMLHYNFPAFSTGEARPNRGVGRREVGHGNL----AMRAIKKVLPPDNENPYVIRVVS 433
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
D+++++G + A + +AL D + + + + + D
Sbjct: 434 DILESNGSSSMATVCAGTLALLDAGIKISSPVSGIAMGLISDEKTG-------KYAILSD 486
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T +G I Q + S D LN AK+ ++
Sbjct: 487 ILGDEDHLGDMDFKVTGTKNG-ITACQMDLKVNGLSYDVLTEALNQAKEGRLHILGEMAK 545
Query: 237 VISN 240
IS
Sbjct: 546 TISE 549
Score = 101 bits (251), Expect = 1e-19, Method: Composition-based stats.
Identities = 40/235 (17%), Positives = 75/235 (31%), Gaps = 27/235 (11%)
Query: 7 QENQMREISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITA 61
R I + ++K A+GS +VK GDT LL T E V + + A
Sbjct: 11 DLGDGRIIEIETGKLAKQADGSVVVKQGDTMLLATVVSNKDAREGVDFLPLSVDYQEKYA 70
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
G +P R R I R++ RALR + Q
Sbjct: 71 ASGRIPGGFLRR------EARLSDYEVLISRLVDRALRPLFPEDYHAETQ---------- 114
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
+ I+ + D L + + G ++ + + G +++ +
Sbjct: 115 ---VMISLISSDENIMPDALAGLAASAAIAVSDIPFNGPISEVRVAKIDGQLVINPSRTD 171
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
++ ++ I V+ E + + A + I + +QK+
Sbjct: 172 LERATLEFIVAGSEKD-INMVE--GESNEIQEAELVEAIQFAHEAIKKQVAVQKE 223
>gi|89889343|ref|ZP_01200854.1| polyribonucleotide nucleotidyltransferase [Flavobacteria bacterium
BBFL7]
gi|89517616|gb|EAS20272.1| polyribonucleotide nucleotidyltransferase [Flavobacteria bacterium
BBFL7]
Length = 748
Score = 145 bits (366), Expect = 4e-33, Method: Composition-based stats.
Identities = 48/243 (19%), Positives = 83/243 (34%), Gaps = 20/243 (8%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
+RL GR+ +R+I GS + G+T L T TL + V
Sbjct: 317 IRLDGRKTTDIRDIWCEVDYLPSTHGSAIFSRGETQALATVTLGTSRDANVIDMASQEGE 376
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P STG S R+ G QR + L + + +
Sbjct: 377 ERFYLHYNFPPFSTGEARPLRGTSRREIGHGNLAQRALKNMLPEDL------PYTVRVVS 430
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V++++G + A + +A+ D M+ + + + G A+
Sbjct: 431 EVLESNGSSSMATVCAGTMAMMDAGLPMKKPVSGIAMGLITDGDKYAVLSD--------- 481
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T+ G I Q + S + L A+D ++ D
Sbjct: 482 ILGDEDHLGDMDFKVTGTEDG-ITACQMDIKVKGLSYEILTNALMQARDGRMHILGKLTD 540
Query: 237 VIS 239
I+
Sbjct: 541 TIA 543
Score = 75.3 bits (183), Expect = 7e-12, Method: Composition-based stats.
Identities = 32/234 (13%), Positives = 73/234 (31%), Gaps = 27/234 (11%)
Query: 13 EISLTRR-VSKYAEGSCLVKFGDTHLLTTA---TLEEKVPMWIRNTKHGWITAEYGMLPR 68
+I++ ++K A GS ++ G LL T + + A G P
Sbjct: 17 DITIETGALAKQAHGSVVITCGKAMLLGTVVSSYKSTGLDFLPLTVDYREKFAAAGKYPG 76
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
R R R++ R LR + Q++I +
Sbjct: 77 GFFKR------EARPNDGEVLTMRLVDRVLRPLFPKDYHAEVQVMIQLMSHDPEVMPDA- 129
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
+ + + + ++ + + G +++ Y + D++
Sbjct: 130 ------------MAGLAASAAIQLSDLPFECAISEVRVARVDGEFVINPSYAQLEAADLE 177
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNEV 242
+ ++ V+G E + ++ A + A + I D Q ++ +V
Sbjct: 178 MMI-GASADSVMMVEGEMEEIS--EEEMIAAIKAAHEAIKDQCAAQ-IALAEQV 227
>gi|229098276|ref|ZP_04229223.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus
Rock3-29]
gi|229117294|ref|ZP_04246672.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus Rock1-3]
gi|228666194|gb|EEL21658.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus Rock1-3]
gi|228685174|gb|EEL39105.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus
Rock3-29]
Length = 712
Score = 145 bits (366), Expect = 4e-33, Method: Composition-based stats.
Identities = 44/244 (18%), Positives = 85/244 (34%), Gaps = 18/244 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56
+R GR+ +++R ++ + GS L G T L+ T + ++ + +
Sbjct: 315 IRPDGRKGDEIRPLASEVGILSRTHGSGLFTRGQTQALSICTLGALGDVQILDGLGVEES 374
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y S G R+ G RAL V+ + +
Sbjct: 375 KRFMHHYNFPSFSVGETRPMRGPGRREIGHGALG----ERALEPVIPSEKDFPYTVRLVS 430
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V++++G T A+I G+ +A+ D ++ + V G + D
Sbjct: 431 EVLESNGSTSQASICGSTLAMMDAGVPLKAPVAGIAMGLVKSGE---------HYTILSD 481
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T G + +Q + S++ L AK ++
Sbjct: 482 IQGMEDHLGDMDFKVAGTAQG-VTALQMDIKIDGLSREILEEALQQAKVGRVHILNHMLS 540
Query: 237 VISN 240
VI+
Sbjct: 541 VIAE 544
Score = 114 bits (284), Expect = 1e-23, Method: Composition-based stats.
Identities = 43/231 (18%), Positives = 90/231 (38%), Gaps = 26/231 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEK---VPMWIRNTKHGWITAEYGMLP 67
R++++ ++K A G+ LV++GDT +L+TAT ++ V + + G +P
Sbjct: 15 RQLTVETGQLAKQANGAVLVRYGDTAVLSTATASKEAKNVDFFPLTVNYEERLYAVGKIP 74
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R GR ++ R+I R +R + Q++ + D +
Sbjct: 75 GGFIKR------EGRPSEKAILASRLIDRPIRPLFADGFRNEVQVVSIVMSVDQDCSSEM 128
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
AA+ G+ +A +G +A + G + G +++ + D+
Sbjct: 129 AAMLGSSLA-------------LSISDIPFEGPIAGATVGRINGEFVINPTVEQQEQSDI 175
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
T I V+ A++ ++ + D I LI Q++++
Sbjct: 176 HLVVAGTKD-AINMVEAGADQVP--EETMLEAIMFGHDEIKRLIAFQEEIV 223
>gi|300918919|ref|ZP_07135478.1| polyribonucleotide nucleotidyltransferase [Escherichia coli MS
115-1]
gi|300413945|gb|EFJ97255.1| polyribonucleotide nucleotidyltransferase [Escherichia coli MS
115-1]
Length = 734
Score = 145 bits (366), Expect = 4e-33, Method: Composition-based stats.
Identities = 45/242 (18%), Positives = 92/242 (38%), Gaps = 18/242 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR+++ +R + + V GS L G+T L TATL + +V + +
Sbjct: 338 RIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVLDELMGERTD 397
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + R+ G + R + +V+ + + +
Sbjct: 398 TFLFHYNFPPYSVGETGMVGSPKRREIGHGRL----AKRGVLAVMPDMDKFPYTVRVVSE 453
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ GA +AL D ++ + V +G + +
Sbjct: 454 ITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLSD---------I 504
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D + G I +Q + +++ LN AK ++ + +
Sbjct: 505 LGDEDHLGDMDFKVAGSRDG-ISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQA 563
Query: 238 IS 239
I+
Sbjct: 564 IN 565
Score = 92.2 bits (227), Expect = 5e-17, Method: Composition-based stats.
Identities = 36/232 (15%), Positives = 76/232 (32%), Gaps = 27/232 (11%)
Query: 14 ISLTRRV-SKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----HGWITAEYGMLPR 68
++L + ++ A + +V DT + T ++K + T G +P
Sbjct: 39 VTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVNYQERTYAAGRIPG 98
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
S R GR I R+I R +R + + Q+I +
Sbjct: 99 SFFRR------EGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVNPDIV 152
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+ GA A G + A G + +++ E +D
Sbjct: 153 AMIGASAA-------------LSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLD 199
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
T++ ++ V+ +E S+D + ++ +I+ +++
Sbjct: 200 LVVAGTEA-AVLMVE--SEAQLLSEDQMLCAVVFGHEQQQVVIQNINELVKE 248
>gi|161506151|ref|YP_001573263.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. arizonae serovar 62:z4,z23:-- str. RSK2980]
gi|160867498|gb|ABX24121.1| hypothetical protein SARI_04342 [Salmonella enterica subsp.
arizonae serovar 62:z4,z23:--]
Length = 721
Score = 145 bits (366), Expect = 4e-33, Method: Composition-based stats.
Identities = 45/242 (18%), Positives = 92/242 (38%), Gaps = 18/242 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR+++ +R + + V GS L G+T L TATL + +V + +
Sbjct: 325 RIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVLDELMGERTD 384
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + R+ G + R + +V+ + + +
Sbjct: 385 SFLFHYNFPPYSVGETGMVGSPKRREIGHGRL----AKRGVLAVMPDMDKFPYTVRVVSE 440
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ GA +AL D ++ + V +G + +
Sbjct: 441 ITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLSD---------I 491
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D + G I +Q + +++ LN AK ++ + +
Sbjct: 492 LGDEDHLGDMDFKVAGSREG-ISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQA 550
Query: 238 IS 239
I+
Sbjct: 551 IN 552
Score = 94.9 bits (234), Expect = 8e-18, Method: Composition-based stats.
Identities = 38/232 (16%), Positives = 76/232 (32%), Gaps = 27/232 (11%)
Query: 14 ISLTRRV-SKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----HGWITAEYGMLPR 68
++L + ++ A + +V DT + T ++K + T G +P
Sbjct: 26 VTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVNYQERTYAAGRIPG 85
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
S R GR I R+I R +R + + Q+I +
Sbjct: 86 SFFRR------EGRPSEGETLIARLIDRPVRPLFPEGFVNEVQVIATVVSVNPQVNPDIV 139
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+ GA A G + A G + +++ E +D
Sbjct: 140 AMIGASAA-------------LSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLD 186
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
T++ ++ V+ AE S+D + ++ +I+ D++
Sbjct: 187 LVVAGTEA-AVLMVESEAEL--LSEDTMLGAVVFGHEQQQVVIQAINDLVKE 235
>gi|152972088|ref|YP_001337234.1| polynucleotide phosphorylase/polyadenylase [Klebsiella pneumoniae
subsp. pneumoniae MGH 78578]
gi|238896671|ref|YP_002921416.1| polynucleotide phosphorylase/polyadenylase [Klebsiella pneumoniae
NTUH-K2044]
gi|187610278|sp|A6TEI3|PNP_KLEP7 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|150956937|gb|ABR78967.1| polynucleotide phosphorylase, has polyadenylase activity
[Klebsiella pneumoniae subsp. pneumoniae MGH 78578]
gi|238548998|dbj|BAH65349.1| polynucleotide phosphorylase/polyadenylase [Klebsiella pneumoniae
subsp. pneumoniae NTUH-K2044]
Length = 711
Score = 145 bits (366), Expect = 4e-33, Method: Composition-based stats.
Identities = 44/242 (18%), Positives = 91/242 (37%), Gaps = 18/242 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR+++ +R + + V GS L G+T L TATL + + + +
Sbjct: 315 RIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQNIDELMGERTD 374
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + R+ G + R + +V+ + + +
Sbjct: 375 SFLFHYNFPPYSVGETGMVGSPKRREIGHGRL----AKRGVLAVMPTIEEFPYTVRVVSE 430
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ GA +AL D ++ + V +G + +
Sbjct: 431 ITESNGSSSMASVCGASLALMDAGVPVKAAVAGIAMGLVKEGDNFVVLSD---------I 481
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D + G I +Q + +++ LN AK ++ + +
Sbjct: 482 LGDEDHLGDMDFKVAGSRDG-ISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQA 540
Query: 238 IS 239
I+
Sbjct: 541 IN 542
Score = 94.5 bits (233), Expect = 1e-17, Method: Composition-based stats.
Identities = 38/233 (16%), Positives = 76/233 (32%), Gaps = 31/233 (13%)
Query: 14 ISLTRRV-SKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----HGWITAEYGMLPR 68
++L + ++ A + +V DT + T ++K + T G +P
Sbjct: 16 VTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVNYQERTYAAGKIPG 75
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
R GR I R+I R +R + + Q+I +
Sbjct: 76 GFFRR------EGRPSEGETLIARLIDRPVRPLFPEGFVNEVQVIATVVSVNPQVNPDIV 129
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+ GA A G + A G + +++ E + +D
Sbjct: 130 AMIGASAA-------------LSLSGIPFNGPIGAARVGYINDQYVLNPTQEELKSSKLD 176
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR----IADLIKLQKDV 237
T++ ++ V+ AE S+D + ++ I ++ L K+
Sbjct: 177 LVVAGTEA-AVLMVESEAEL--LSEDQMLGAVVFGHEQQQIVIQNINDLVKEA 226
>gi|254482485|ref|ZP_05095724.1| 3' exoribonuclease family, domain 2, protein [marine gamma
proteobacterium HTCC2148]
gi|214037176|gb|EEB77844.1| 3' exoribonuclease family, domain 2, protein [marine gamma
proteobacterium HTCC2148]
Length = 703
Score = 145 bits (366), Expect = 4e-33, Method: Composition-based stats.
Identities = 42/243 (17%), Positives = 84/243 (34%), Gaps = 18/243 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +R I+ V A GS L G+T + TL + ++ + +
Sbjct: 314 RIDGRDTRTVRAIACEVDVLAKAHGSALFTRGETQAIGAVTLGSTRDAQIIDALHGERRD 373
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + S R+ G + R L +V+ I + +
Sbjct: 374 PFMLHYNFPPYSVGEAGRVGFTSRREVGHGRL----ARRGLAAVLPNQEEFPYTIRVVSE 429
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ + L ++ + V G+ A+ +
Sbjct: 430 ITESNGSSSMASVCAGSLGLMAAGVPLKAPVAGIAMGLVKDGNQFAVLTD---------I 480
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T G I +Q + + L+ A+ ++ +V
Sbjct: 481 LGDEDHLGDMDFKVAGTAEG-ITALQMDIKIEGITAQIMETALDQAQHARLHILGQMNEV 539
Query: 238 ISN 240
++
Sbjct: 540 LAE 542
Score = 115 bits (287), Expect = 6e-24, Method: Composition-based stats.
Identities = 33/232 (14%), Positives = 72/232 (31%), Gaps = 26/232 (11%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT----KHGWITAEYGMLPR 68
++L +++ A GS LV +T +L T E+ + T G +P
Sbjct: 15 VTLETGRIARQATGSVLVTVENTSVLCTVVAEKTQRPGRDFFPLAVHYVEKTYSVGKIPG 74
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
R R + R+I R +R + + Q++
Sbjct: 75 GFFKR------EARPSEKETLTSRLIDRPIRPLFPNGFMNEVQVVCTVMSADKHIDPDIP 128
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+ G AL ++ + I++ Y + +D
Sbjct: 129 AMIGTSAALAISGAPFNGPIGGARVGFSDE------------KGYILNPTYEQLEESKLD 176
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
T ++ V+ A+ S+D + A + +++ ++++
Sbjct: 177 MVVAGTAD-AVLMVESEAKE--LSEDQMLGAVLFAHQEMQTVVQAINELVAE 225
>gi|187611310|sp|Q31W43|PNP_SHIBS RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|320186653|gb|EFW61377.1| Polyribonucleotide nucleotidyltransferase [Shigella flexneri CDC
796-83]
Length = 711
Score = 145 bits (366), Expect = 4e-33, Method: Composition-based stats.
Identities = 45/242 (18%), Positives = 93/242 (38%), Gaps = 18/242 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR+++ +R + + V GS L G+T L TATL + +V + +
Sbjct: 315 RIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVLDELMGERTD 374
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + R+ G + R++ +V+ + + +
Sbjct: 375 TFLFHYNFPPYSVGETGMVGSPKRREIGHGRL----AKRSVLAVMPDMDKFPYTVRVVSE 430
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ GA +AL D ++ + V +G + +
Sbjct: 431 ITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLSD---------I 481
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D + G I +Q + +++ LN AK ++ + +
Sbjct: 482 LGDEDHLGDMDFKVAGSREG-ISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQA 540
Query: 238 IS 239
I+
Sbjct: 541 IN 542
Score = 96.1 bits (237), Expect = 4e-18, Method: Composition-based stats.
Identities = 37/232 (15%), Positives = 76/232 (32%), Gaps = 27/232 (11%)
Query: 14 ISLTRRV-SKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----HGWITAEYGMLPR 68
++L + ++ A + +V DT + T ++K + T G +P
Sbjct: 16 VTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVNYQERTYAAGRIPG 75
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
S R GR I R+I R +R + + Q+I +
Sbjct: 76 SFFRR------EGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVNPDIV 129
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+ GA A G + A G + +++ E +D
Sbjct: 130 AMIGASAA-------------LSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLD 176
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
T++ ++ V+ AE S+D + ++ +I+ +++
Sbjct: 177 LVVAGTEA-AVLMVESEAEL--LSEDQMLGAVVFGHEQQQVVIQNINELVKE 225
>gi|299534733|ref|ZP_07048063.1| polynucleotide phosphorylase/polyadenylase [Lysinibacillus
fusiformis ZC1]
gi|298729821|gb|EFI70366.1| polynucleotide phosphorylase/polyadenylase [Lysinibacillus
fusiformis ZC1]
Length = 704
Score = 145 bits (366), Expect = 5e-33, Method: Composition-based stats.
Identities = 43/244 (17%), Positives = 87/244 (35%), Gaps = 18/244 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56
+R GR+ +++R +S + + GS L G T L+ T + ++ + +
Sbjct: 314 IRPDGRKLDEIRPLSSETGLLQRTHGSGLFTRGQTQALSICTLGALGDVQIIDGLGVEES 373
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y S G R+ G RAL +V+ ++ I
Sbjct: 374 KRFMHHYNFPQFSVGETGPIRGPGRREIGHGALG----ERALEAVIPDESIFPYTIRCVS 429
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V++++G T A+I + +A+ D ++ + + KG +I
Sbjct: 430 EVLESNGSTSQASICASTLAMMDAGVPLKAPVAGIAMGLIKKGEHYSILTD--------- 480
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T G + +Q + S++ L AK +++
Sbjct: 481 IQGMEDHLGDMDFKVAGTAKG-VTALQMDIKIDGLSRNILEEALTQAKVGRMHILESMLA 539
Query: 237 VISN 240
+
Sbjct: 540 TLPE 543
Score = 119 bits (297), Expect = 5e-25, Method: Composition-based stats.
Identities = 41/233 (17%), Positives = 83/233 (35%), Gaps = 26/233 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATL---EEKVPMWIRNTKHGWITAEYGMLP 67
R + + ++K A G+ LV++GDT +L TAT+ + + + + G +P
Sbjct: 14 RPLVIEVGQLAKQANGAALVRYGDTSVLATATMSKSPKPLDFFPLTVNYEERLYAAGKIP 73
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R GR ++ R+I R +R + Q+I D +
Sbjct: 74 GGFIKR------EGRPSEKAILASRLIDRPIRPMFPDGFRNEVQVISMVMSNDPDCTSEM 127
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
AA+ G+ +A G +A + G + G IV+ + + +
Sbjct: 128 AAMVGSSLA-------------LAISDIPFDGPIAGVQVGYIDGEFIVNPTVEQSNRSTI 174
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
+ I V+ A ++ + + I +I Q+ +++
Sbjct: 175 HLSVAGNKD-AINMVEAGALEVP--EEIMLEAIMFGHEEIKKIIAFQEQIVAE 224
>gi|229162743|ref|ZP_04290700.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus R309803]
gi|228620625|gb|EEK77494.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus R309803]
Length = 712
Score = 145 bits (366), Expect = 5e-33, Method: Composition-based stats.
Identities = 44/244 (18%), Positives = 85/244 (34%), Gaps = 18/244 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56
+R GR+ +++R ++ + GS L G T L+ T + ++ + +
Sbjct: 315 IRPDGRKGDEIRPLASEVGILSRTHGSGLFTRGQTQALSICTLGALGDVQILDGLGVEES 374
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y S G R+ G RAL V+ + +
Sbjct: 375 KRFMHHYNFPSFSVGETRPMRGPGRREIGHGALG----ERALEPVIPSEKDFPYTVRLVS 430
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V++++G T A+I G+ +A+ D ++ + V G + D
Sbjct: 431 EVLESNGSTSQASICGSTLAMMDAGVPLKAPVAGIAMGLVKSGE---------HYTILSD 481
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T G + +Q + S++ L AK ++
Sbjct: 482 IQGMEDHLGDMDFKVAGTAQG-VTALQMDIKIDGLSREILEEALQQAKVGRVHILNHMLS 540
Query: 237 VISN 240
VI+
Sbjct: 541 VIAE 544
Score = 111 bits (277), Expect = 8e-23, Method: Composition-based stats.
Identities = 43/231 (18%), Positives = 90/231 (38%), Gaps = 26/231 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEK---VPMWIRNTKHGWITAEYGMLP 67
R++++ ++K A G+ LV++GDT +L+TAT ++ V + + G +P
Sbjct: 15 RQLTVETSQLAKQANGAVLVRYGDTAVLSTATASKEAKNVDFFPLTVNYEERLYAVGKIP 74
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R GR ++ R+I R +R + Q++ + D +
Sbjct: 75 GGFIKR------EGRPSEKAILASRLIDRPIRPLFADGFRNEVQVVSIVMSVDQDCSSEM 128
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
AA+ G+ +A +G +A + G + G +++ + D+
Sbjct: 129 AAMLGSSLA-------------LSISDIPFEGPIAGATVGRINGEFVINPTVEQQEQSDI 175
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
T I V+ A++ ++ + D I LI Q++++
Sbjct: 176 HLVVAGTKD-AINMVEAGADQVP--EETMLEAIMFGHDEIKRLIAFQEEIV 223
>gi|145600553|ref|YP_001164629.1| polynucleotide phosphorylase/polyadenylase [Yersinia pestis
Pestoides F]
gi|153948233|ref|YP_001402546.1| polynucleotide phosphorylase/polyadenylase [Yersinia
pseudotuberculosis IP 31758]
gi|153997470|ref|ZP_02022570.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis
CA88-4125]
gi|162418341|ref|YP_001608292.1| polynucleotide phosphorylase/polyadenylase [Yersinia pestis Angola]
gi|165925875|ref|ZP_02221707.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis biovar
Orientalis str. F1991016]
gi|165936694|ref|ZP_02225261.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis biovar
Orientalis str. IP275]
gi|166010063|ref|ZP_02230961.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis biovar
Antiqua str. E1979001]
gi|166214313|ref|ZP_02240348.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis biovar
Antiqua str. B42003004]
gi|167420765|ref|ZP_02312518.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis biovar
Orientalis str. MG05-1020]
gi|167423666|ref|ZP_02315419.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis biovar
Mediaevalis str. K1973002]
gi|170025941|ref|YP_001722446.1| polynucleotide phosphorylase/polyadenylase [Yersinia
pseudotuberculosis YPIII]
gi|218930504|ref|YP_002348379.1| polynucleotide phosphorylase/polyadenylase [Yersinia pestis CO92]
gi|229839142|ref|ZP_04459301.1| polynucleotide phosphorylase/polyadenylase [Yersinia pestis biovar
Orientalis str. PEXU2]
gi|229896631|ref|ZP_04511798.1| polynucleotide phosphorylase/polyadenylase [Yersinia pestis
Pestoides A]
gi|229899706|ref|ZP_04514847.1| polynucleotide phosphorylase/polyadenylase [Yersinia pestis biovar
Orientalis str. India 195]
gi|270489142|ref|ZP_06206216.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis KIM D27]
gi|294505190|ref|YP_003569252.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis Z176003]
gi|123149978|sp|Q0WBF9|PNP_YERPE RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|187611335|sp|A4TQU4|PNP_YERPP RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|187611342|sp|A7FMR8|PNP_YERP3 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|187611439|sp|Q1C3L8|PNP_YERPA RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|226704837|sp|A9R5A9|PNP_YERPG RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|226704838|sp|B1JLX6|PNP_YERPY RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|115349115|emb|CAL22078.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis CO92]
gi|145212249|gb|ABP41656.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis
Pestoides F]
gi|149289107|gb|EDM39187.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis
CA88-4125]
gi|152959728|gb|ABS47189.1| polyribonucleotide nucleotidyltransferase [Yersinia
pseudotuberculosis IP 31758]
gi|162351156|gb|ABX85104.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis Angola]
gi|165915343|gb|EDR33953.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis biovar
Orientalis str. IP275]
gi|165922487|gb|EDR39664.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis biovar
Orientalis str. F1991016]
gi|165990970|gb|EDR43271.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis biovar
Antiqua str. E1979001]
gi|166204545|gb|EDR49025.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis biovar
Antiqua str. B42003004]
gi|166961571|gb|EDR57592.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis biovar
Orientalis str. MG05-1020]
gi|167057836|gb|EDR67582.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis biovar
Mediaevalis str. K1973002]
gi|169752475|gb|ACA69993.1| Polyribonucleotide nucleotidyltransferase [Yersinia
pseudotuberculosis YPIII]
gi|229687198|gb|EEO79273.1| polynucleotide phosphorylase/polyadenylase [Yersinia pestis biovar
Orientalis str. India 195]
gi|229695508|gb|EEO85555.1| polynucleotide phosphorylase/polyadenylase [Yersinia pestis biovar
Orientalis str. PEXU2]
gi|229700409|gb|EEO88441.1| polynucleotide phosphorylase/polyadenylase [Yersinia pestis
Pestoides A]
gi|262367183|gb|ACY63740.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis D182038]
gi|270337646|gb|EFA48423.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis KIM D27]
gi|294355649|gb|ADE65990.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis Z176003]
gi|320016696|gb|ADW00268.1| polynucleotide phosphorylase/polyadenylase [Yersinia pestis biovar
Medievalis str. Harbin 35]
Length = 705
Score = 145 bits (366), Expect = 5e-33, Method: Composition-based stats.
Identities = 43/242 (17%), Positives = 92/242 (38%), Gaps = 18/242 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR+++ +R + + + GS L G+T L TATL + + + +
Sbjct: 315 RIDGREKDMIRGLDVRTGILPRTHGSALFTRGETQALVTATLGTARDAQNIDELMGERTD 374
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P G + R+ G + R + +V+ ++ I + +
Sbjct: 375 SFLLHYNFPPYCVGETGMVGSPKRREIGHGRL----AKRGVLAVMPSASEFPYTIRVVSE 430
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ GA +AL D ++ + V +G + +
Sbjct: 431 ITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNFVVLSD---------I 481
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D + G + +Q + +++ LN AK ++ + +
Sbjct: 482 LGDEDHLGDMDFKVAGSRDG-VTALQMDIKIEGITREIMQVALNQAKGARLHILGVMEQA 540
Query: 238 IS 239
IS
Sbjct: 541 IS 542
Score = 93.4 bits (230), Expect = 3e-17, Method: Composition-based stats.
Identities = 36/232 (15%), Positives = 77/232 (33%), Gaps = 27/232 (11%)
Query: 14 ISLTRRV-SKYAEGSCLVKFGDTHLLTTATLEEKVPM----WIRNTKHGWITAEYGMLPR 68
+++ + ++ A + +V DT + T ++K + + T G +P
Sbjct: 16 VTIETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQSFFPLTVNYQERTYAAGRIPG 75
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
S R GR R+I R +R + S L Q+I +
Sbjct: 76 SFFRR------EGRPSEGETLTSRLIDRPIRPLFPDSFLNEVQVIATVVSVNPQINPDIV 129
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+ GA A G + A G + +++ E +D
Sbjct: 130 ALIGASAA-------------LSLSGIPFNGPIGAARVGFINDQYVLNPTTDELKESRLD 176
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
T +G ++ V+ A+ S++ + ++ +I+ +++
Sbjct: 177 LVVAGT-AGAVLMVESEADI--LSEEQMLGAVVFGHEQQQVVIENINALVAE 225
>gi|227327831|ref|ZP_03831855.1| polynucleotide phosphorylase/polyadenylase [Pectobacterium
carotovorum subsp. carotovorum WPP14]
Length = 706
Score = 145 bits (366), Expect = 5e-33, Method: Composition-based stats.
Identities = 45/242 (18%), Positives = 91/242 (37%), Gaps = 18/242 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVP----MWIRNTKHG 57
R+ GR+++ +R + + V GS L G+T L TATL + + +
Sbjct: 315 RIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTERDAQNIDELTGERTD 374
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + R+ G + R + +V+ + + + +
Sbjct: 375 RFLLHYNFPPYSVGETGMVGSPKRREIGHGRL----AKRGVLAVMPKANEFPYTVRVVSE 430
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ GA +AL D ++ + V +G + +
Sbjct: 431 ITESNGSSSMASVCGASLALMDAGVPIKSAVAGIAMGLVKEGDNFVVLSD---------I 481
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D + G I +Q + +++ LN AK ++ + +
Sbjct: 482 LGDEDHLGDMDFKVAGSREG-ITALQMDIKIEGITREIMQVALNQAKGARLHILGVMEQA 540
Query: 238 IS 239
IS
Sbjct: 541 IS 542
Score = 91.8 bits (226), Expect = 7e-17, Method: Composition-based stats.
Identities = 36/232 (15%), Positives = 71/232 (30%), Gaps = 27/232 (11%)
Query: 14 ISLTRRV-SKYAEGSCLVKFGDTHLLTTATLEEKVPM----WIRNTKHGWITAEYGMLPR 68
++L + ++ A + +V DT + T + + + T G P
Sbjct: 16 VTLETGMMARQATAAVMVSMDDTAVFVTVVGAKSAKPGQSFFPLTVNYQERTYAAGRFPG 75
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
R GR R+I R +R + L Q+I +
Sbjct: 76 GFFRR------EGRPSEGETLTSRLIDRPIRPLFPEGFLNEVQVIATVVSVNPQVSPDIV 129
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+ GA A G + G L +++ E +D
Sbjct: 130 AMIGASAA-------------LSLSGIPFNGPIGVARVGYLNDQYVLNPTMDELKESRLD 176
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
T+ G ++ V+ AE S+D + ++ +I+ +++
Sbjct: 177 LVVAGTE-GAVLMVESEAEL--LSEDQMLGAVVFGHEQQQIVIQNINALVAE 225
>gi|227112579|ref|ZP_03826235.1| polynucleotide phosphorylase/polyadenylase [Pectobacterium
carotovorum subsp. brasiliensis PBR1692]
Length = 706
Score = 145 bits (366), Expect = 5e-33, Method: Composition-based stats.
Identities = 45/242 (18%), Positives = 91/242 (37%), Gaps = 18/242 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVP----MWIRNTKHG 57
R+ GR+++ +R + + V GS L G+T L TATL + + +
Sbjct: 315 RIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTERDAQNIDELTGERTD 374
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + R+ G + R + +V+ + + + +
Sbjct: 375 RFLLHYNFPPYSVGETGMVGSPKRREIGHGRL----AKRGVLAVMPKANEFPYTVRVVSE 430
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ GA +AL D ++ + V +G + +
Sbjct: 431 ITESNGSSSMASVCGASLALMDAGVPIKSAVAGIAMGLVKEGDNFVVLSD---------I 481
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D + G I +Q + +++ LN AK ++ + +
Sbjct: 482 LGDEDHLGDMDFKVAGSREG-ITALQMDIKIEGITREIMQVALNQAKGARLHILGVMEQA 540
Query: 238 IS 239
IS
Sbjct: 541 IS 542
Score = 91.1 bits (224), Expect = 1e-16, Method: Composition-based stats.
Identities = 35/232 (15%), Positives = 71/232 (30%), Gaps = 27/232 (11%)
Query: 14 ISLTRRV-SKYAEGSCLVKFGDTHLLTTATLEEKVPM----WIRNTKHGWITAEYGMLPR 68
++L + ++ A + +V DT + T + + + T G P
Sbjct: 16 VTLETGMMARQATAAVMVSMDDTAVFVTVVGAKNAKPGQSFFPLTVNYQERTYAAGRFPG 75
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
R GR R+I R +R + L Q+I +
Sbjct: 76 GFFRR------EGRPSEGETLTSRLIDRPIRPLFPEGFLNEVQVIATVVSVNPQVSPDIV 129
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+ GA A G + G L +++ E +D
Sbjct: 130 AMIGASAA-------------LSLSGIPFNGPIGVARVGYLNDQYVLNPTMDELKESRLD 176
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
T+ G ++ V+ +E S+D + ++ +I+ +++
Sbjct: 177 LVVAGTE-GAVLMVE--SEADLLSEDQMLGAVVFGHEQQQIVIQNINALVAE 225
>gi|157148733|ref|YP_001456052.1| polynucleotide phosphorylase/polyadenylase [Citrobacter koseri ATCC
BAA-895]
gi|157085938|gb|ABV15616.1| hypothetical protein CKO_04562 [Citrobacter koseri ATCC BAA-895]
Length = 722
Score = 145 bits (366), Expect = 5e-33, Method: Composition-based stats.
Identities = 45/242 (18%), Positives = 92/242 (38%), Gaps = 18/242 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR+++ +R + + V GS L G+T L TATL + +V + +
Sbjct: 326 RIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVLDELMGERTD 385
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + R+ G + R + +V+ + + +
Sbjct: 386 SFLFHYNFPPYSVGETGMVGSPKRREIGHGRL----AKRGVLAVMPEMDKFPYTVRVVSE 441
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ GA +AL D ++ + V +G + +
Sbjct: 442 ITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNFVVLSD---------I 492
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D + G I +Q + +++ LN AK ++ + +
Sbjct: 493 LGDEDHLGDMDFKVAGSRDG-ISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQA 551
Query: 238 IS 239
I+
Sbjct: 552 IN 553
Score = 91.8 bits (226), Expect = 7e-17, Method: Composition-based stats.
Identities = 39/233 (16%), Positives = 76/233 (32%), Gaps = 31/233 (13%)
Query: 14 ISLTRRV-SKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----HGWITAEYGMLPR 68
++L + ++ A + +V DT + T ++K + T G +P
Sbjct: 27 VTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVNYQERTYAAGRIPG 86
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
S R GR I R+I R +R + + Q+I +
Sbjct: 87 SFFRR------EGRPSEGETLIARLIDRPVRPLFPEGFVNEVQVIATVVSVNPQVNPDIV 140
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+ GA A G + A G + +++ E +D
Sbjct: 141 AMIGASAA-------------LSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLD 187
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR----IADLIKLQKDV 237
T++ ++ V+ AE S+D + ++ I ++ L K+
Sbjct: 188 LVVAGTEA-AVLMVESEAEL--LSEDTMLGAVVFGHEQQQIVIQNINDLVKEA 237
>gi|303326248|ref|ZP_07356691.1| polyribonucleotide nucleotidyltransferase [Desulfovibrio sp.
3_1_syn3]
gi|302864164|gb|EFL87095.1| polyribonucleotide nucleotidyltransferase [Desulfovibrio sp.
3_1_syn3]
Length = 747
Score = 145 bits (366), Expect = 5e-33, Method: Composition-based stats.
Identities = 44/243 (18%), Positives = 85/243 (34%), Gaps = 19/243 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +R I + V A GS L + G+T L ATL +E+ +
Sbjct: 324 RIDGRDTKSVRPIQIQTGVLPRAHGSALFRRGETKSLVIATLGSSTDEQRMDSLTGDVTK 383
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P G R R + ++LR ++ A + + +
Sbjct: 384 RFMLHYNFPPYCVGEVKP-----VRVSRREIGHGALAEKSLRPILPADADFPFTLRVVAE 438
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
++++G + AA+ G ++L D + + + +G + +
Sbjct: 439 TMESNGSSSMAAVCGGSLSLMDAGVPVSAPVAGVAMGLIKEGEKFIVLTD---------I 489
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED+ D+D T G + VQ + + D A + A++ ++
Sbjct: 490 LGDEDALGDMDFKIAGTADG-VTGVQMDIKITGLTTDIMRAAMRQAREGRLHILAEMARA 548
Query: 238 ISN 240
I+
Sbjct: 549 IAE 551
Score = 92.2 bits (227), Expect = 5e-17, Method: Composition-based stats.
Identities = 44/228 (19%), Positives = 80/228 (35%), Gaps = 25/228 (10%)
Query: 13 EISLTRR-VSKYAEGSCLVKFGDTHLLTTAT---LEEKVPMWIRNTKHGWITAEYGMLPR 68
E+ ++ A G+ ++ G T +L T LE + ++ G +P
Sbjct: 19 EVIFECGRLANQAHGAVWMQCGGTVVLVTVCSQPLEFDKGFFPLTVEYSEKMYAAGRIPG 78
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
S R GR R + R+I R +R + Q++ + +
Sbjct: 79 SFFRR-----EIGRPSERETLVSRLIDRPIRPLFPKGLNEDVQVLASVISADQENESDVL 133
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+TGA AL +G VA G + G +++ + + + D++
Sbjct: 134 ALTGASAALM-------------VSPLPFEGPVAGGRIGRVNGQFVLNPSFEQQAQSDLN 180
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
F + + V+G A S+D L+ + I LI Q
Sbjct: 181 ILFAASRD-ALTMVEGDAR--FLSEDVIIEALDWGRKEIQPLIDAQLQ 225
>gi|229900960|ref|ZP_04516084.1| polynucleotide phosphorylase/polyadenylase [Yersinia pestis
Nepal516]
gi|187611438|sp|Q1CM51|PNP_YERPN RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|229682299|gb|EEO78391.1| polynucleotide phosphorylase/polyadenylase [Yersinia pestis
Nepal516]
Length = 705
Score = 145 bits (366), Expect = 5e-33, Method: Composition-based stats.
Identities = 43/242 (17%), Positives = 92/242 (38%), Gaps = 18/242 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR+++ +R + + + GS L G+T L TATL + + + +
Sbjct: 315 RIDGREKDMIRGLDVRTGILPRTHGSALFTRGETQALVTATLGTARDAQNIDELMGERTD 374
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P G + R+ G + R + +V+ ++ I + +
Sbjct: 375 SFLLHYNFPPYCVGETGMVGSPKRREIGHGRL----AKRGVLAVMPSASEFPYTIRVVSE 430
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ GA +AL D ++ + V +G + +
Sbjct: 431 ITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNFVVLSD---------I 481
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D + G + +Q + +++ LN AK ++ + +
Sbjct: 482 LGDEDHLGDMDFKVAGSRDG-VTALQMDIKIEGITREIMQVALNQAKGARLHILGVMEQA 540
Query: 238 IS 239
IS
Sbjct: 541 IS 542
Score = 92.2 bits (227), Expect = 5e-17, Method: Composition-based stats.
Identities = 34/232 (14%), Positives = 76/232 (32%), Gaps = 27/232 (11%)
Query: 14 ISLTRRV-SKYAEGSCLVKFGDTHLLTTATLEEKVPM----WIRNTKHGWITAEYGMLPR 68
+++ + ++ A + +V DT + T ++K + + T G +P
Sbjct: 16 VTIETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQSFFPLTVNYQERTYAAGRIPG 75
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
S R GR R+I R +R + S L Q+I +
Sbjct: 76 SFFRR------EGRPSEGETLTSRLIDRPIRPLFPDSFLNEVQVIATVVSVNPQINPDIV 129
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+ G + G + A G + +++ E +D
Sbjct: 130 ALIG-------------ASAVLSLSGIPFNGPIGAARVGFINDQYVLNPTTDELKESRLD 176
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
T +G ++ V+ A+ S++ + ++ +I+ +++
Sbjct: 177 LVVAGT-AGAVLMVESEADI--LSEEQMLGAVVFGHEQQQVVIENINALVAE 225
>gi|187611317|sp|A9MP39|PNP_SALAR RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
Length = 711
Score = 145 bits (366), Expect = 5e-33, Method: Composition-based stats.
Identities = 45/242 (18%), Positives = 92/242 (38%), Gaps = 18/242 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR+++ +R + + V GS L G+T L TATL + +V + +
Sbjct: 315 RIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVLDELMGERTD 374
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + R+ G + R + +V+ + + +
Sbjct: 375 SFLFHYNFPPYSVGETGMVGSPKRREIGHGRL----AKRGVLAVMPDMDKFPYTVRVVSE 430
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ GA +AL D ++ + V +G + +
Sbjct: 431 ITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLSD---------I 481
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D + G I +Q + +++ LN AK ++ + +
Sbjct: 482 LGDEDHLGDMDFKVAGSREG-ISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQA 540
Query: 238 IS 239
I+
Sbjct: 541 IN 542
Score = 94.9 bits (234), Expect = 8e-18, Method: Composition-based stats.
Identities = 38/232 (16%), Positives = 76/232 (32%), Gaps = 27/232 (11%)
Query: 14 ISLTRRV-SKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----HGWITAEYGMLPR 68
++L + ++ A + +V DT + T ++K + T G +P
Sbjct: 16 VTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVNYQERTYAAGRIPG 75
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
S R GR I R+I R +R + + Q+I +
Sbjct: 76 SFFRR------EGRPSEGETLIARLIDRPVRPLFPEGFVNEVQVIATVVSVNPQVNPDIV 129
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+ GA A G + A G + +++ E +D
Sbjct: 130 AMIGASAA-------------LSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLD 176
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
T++ ++ V+ AE S+D + ++ +I+ D++
Sbjct: 177 LVVAGTEA-AVLMVESEAEL--LSEDTMLGAVVFGHEQQQVVIQAINDLVKE 225
>gi|51594836|ref|YP_069027.1| polynucleotide phosphorylase/polyadenylase [Yersinia
pseudotuberculosis IP 32953]
gi|186893845|ref|YP_001870957.1| polynucleotide phosphorylase/polyadenylase [Yersinia
pseudotuberculosis PB1/+]
gi|81640532|sp|Q66F56|PNP_YERPS RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|226704836|sp|B2K2Q9|PNP_YERPB RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|51588118|emb|CAH19724.1| polyribonucleotide nucleotidyltransferase [Yersinia
pseudotuberculosis IP 32953]
gi|186696871|gb|ACC87500.1| 3' exoribonuclease [Yersinia pseudotuberculosis PB1/+]
Length = 704
Score = 145 bits (366), Expect = 5e-33, Method: Composition-based stats.
Identities = 43/242 (17%), Positives = 92/242 (38%), Gaps = 18/242 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR+++ +R + + + GS L G+T L TATL + + + +
Sbjct: 315 RIDGREKDMIRGLDVRTGILPRTHGSALFTRGETQALVTATLGTARDAQNIDELMGERTD 374
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P G + R+ G + R + +V+ ++ I + +
Sbjct: 375 SFLLHYNFPPYCVGETGMVGSPKRREIGHGRL----AKRGVLAVMPSASEFPYTIRVVSE 430
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ GA +AL D ++ + V +G + +
Sbjct: 431 ITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNFVVLSD---------I 481
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D + G + +Q + +++ LN AK ++ + +
Sbjct: 482 LGDEDHLGDMDFKVAGSRDG-VTALQMDIKIEGITREIMQVALNQAKGARLHILGVMEQA 540
Query: 238 IS 239
IS
Sbjct: 541 IS 542
Score = 93.4 bits (230), Expect = 3e-17, Method: Composition-based stats.
Identities = 36/232 (15%), Positives = 77/232 (33%), Gaps = 27/232 (11%)
Query: 14 ISLTRRV-SKYAEGSCLVKFGDTHLLTTATLEEKVPM----WIRNTKHGWITAEYGMLPR 68
+++ + ++ A + +V DT + T ++K + + T G +P
Sbjct: 16 VTIETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQSFFPLTVNYQERTYAAGRIPG 75
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
S R GR R+I R +R + S L Q+I +
Sbjct: 76 SFFRR------EGRPSEGETLTSRLIDRPIRPLFPDSFLNEVQVIATVVSVNPQINPDIV 129
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+ GA A G + A G + +++ E +D
Sbjct: 130 ALIGASAA-------------LSLSGIPFNGPIGAARVGFINDQYVLNPTTDELKESRLD 176
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
T +G ++ V+ A+ S++ + ++ +I+ +++
Sbjct: 177 LVVAGT-AGAVLMVESEADI--LSEEQMLGAVVFGHEQQQVVIENINALVAE 225
>gi|323489596|ref|ZP_08094823.1| polynucleotide phosphorylase/polyadenylase [Planococcus donghaensis
MPA1U2]
gi|323396727|gb|EGA89546.1| polynucleotide phosphorylase/polyadenylase [Planococcus donghaensis
MPA1U2]
Length = 705
Score = 145 bits (366), Expect = 5e-33, Method: Composition-based stats.
Identities = 43/244 (17%), Positives = 82/244 (33%), Gaps = 18/244 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56
+R GR +++R +S + GS L G T ++ T + ++ +
Sbjct: 313 IRPDGRGPSEIRPLSSEVGILNRTHGSGLFTRGQTQAMSICTLGALGDVQIIDGLGIEDT 372
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y S G R+ G RAL +V+ I +
Sbjct: 373 KRFMHHYNFPLFSVGETGFLRGPGRREIGHGALG----ERALEAVIPNEKDFPYTIRLVA 428
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V++++G T A+I + +A+ D + + V KG +
Sbjct: 429 EVLESNGSTSQASICASTLAMMDAGVPLTAPVAGIAMGLVKKGDNYTVLSD--------- 479
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T G I +Q + S++ L A+ +++
Sbjct: 480 IQGMEDHLGDMDFKVAGTAKG-ITALQMDIKIDGLSREILEEALTQAQIGRIHILESMLA 538
Query: 237 VISN 240
I+
Sbjct: 539 TIAE 542
Score = 114 bits (285), Expect = 1e-23, Method: Composition-based stats.
Identities = 47/235 (20%), Positives = 90/235 (38%), Gaps = 27/235 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATL---EEKVPMWIRNTKHGWITAEYGMLP 67
RE+ + ++K A G+ L+++GDT +L+TAT + + + + G +P
Sbjct: 15 RELQVEVGQLAKQANGAALIRYGDTAVLSTATASKTPKPLDFFPLTVNYEERLYAVGKIP 74
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R GR ++ R+I R +R + Q+I + D +
Sbjct: 75 GGFIKR------EGRPSEKATLTSRLIDRPIRPLFPDGFRNEVQVISMVMSVDQDCPSEM 128
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
AA+ G+ +AL G +A + G++ G I++ + +
Sbjct: 129 AAMFGSSLALM-------------ISDIPFGGPIAGVIVGLIDGQYIINPTNDQLEQSSI 175
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNEV 242
+ T I V+ A+ S++ + + I LI Q+ I+ EV
Sbjct: 176 NLIVAGTKD-AINMVEAGAKE--VSEEVILEAIMFGHEEIKKLIAFQEQ-IAEEV 226
>gi|108808983|ref|YP_652899.1| polynucleotide phosphorylase/polyadenylase [Yersinia pestis
Antiqua]
gi|108780896|gb|ABG14954.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis Antiqua]
Length = 731
Score = 145 bits (365), Expect = 5e-33, Method: Composition-based stats.
Identities = 43/242 (17%), Positives = 92/242 (38%), Gaps = 18/242 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR+++ +R + + + GS L G+T L TATL + + + +
Sbjct: 341 RIDGREKDMIRGLDVRTGILPRTHGSALFTRGETQALVTATLGTARDAQNIDELMGERTD 400
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P G + R+ G + R + +V+ ++ I + +
Sbjct: 401 SFLLHYNFPPYCVGETGMVGSPKRREIGHGRL----AKRGVLAVMPSASEFPYTIRVVSE 456
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ GA +AL D ++ + V +G + +
Sbjct: 457 ITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNFVVLSD---------I 507
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D + G + +Q + +++ LN AK ++ + +
Sbjct: 508 LGDEDHLGDMDFKVAGSRDG-VTALQMDIKIEGITREIMQVALNQAKGARLHILGVMEQA 566
Query: 238 IS 239
IS
Sbjct: 567 IS 568
Score = 93.4 bits (230), Expect = 3e-17, Method: Composition-based stats.
Identities = 36/232 (15%), Positives = 77/232 (33%), Gaps = 27/232 (11%)
Query: 14 ISLTRRV-SKYAEGSCLVKFGDTHLLTTATLEEKVPM----WIRNTKHGWITAEYGMLPR 68
+++ + ++ A + +V DT + T ++K + + T G +P
Sbjct: 42 VTIETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQSFFPLTVNYQERTYAAGRIPG 101
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
S R GR R+I R +R + S L Q+I +
Sbjct: 102 SFFRR------EGRPSEGETLTSRLIDRPIRPLFPDSFLNEVQVIATVVSVNPQINPDIV 155
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+ GA A G + A G + +++ E +D
Sbjct: 156 ALIGASAA-------------LSLSGIPFNGPIGAARVGFINDQYVLNPTTDELKESRLD 202
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
T +G ++ V+ A+ S++ + ++ +I+ +++
Sbjct: 203 LVVAGT-AGAVLMVESEADI--LSEEQMLGAVVFGHEQQQVVIENINALVAE 251
>gi|119953582|ref|YP_945792.1| polynucleotide phosphorylase/polyadenylase [Borrelia turicatae
91E135]
gi|119862353|gb|AAX18121.1| polyribonucleotide nucleotidyltransferase [Borrelia turicatae
91E135]
Length = 727
Score = 145 bits (365), Expect = 5e-33, Method: Composition-based stats.
Identities = 45/244 (18%), Positives = 87/244 (35%), Gaps = 19/244 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
+R GR Q+R+I + + GS L G+T L TL +E++ I K
Sbjct: 325 LRTDGRNPTQIRDIVAEVDLLRRTHGSALFTRGETQALAVTTLGTSIDEQIMDDIDGDKR 384
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P S G + R+ G R+L +++ I +
Sbjct: 385 LNFMLHYNFPPFSVGETGRLMTGR-REIGHGHL----AQRSLEAMLPKKDDFPYTIRVVS 439
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
++++++G + A + ++L +++ + V +G I
Sbjct: 440 EILESNGSSSMATVCSGSMSLMAAGVPVKEQVAGIAMGLVSEGDKYVILSD--------- 490
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T +G I Q + + ++ L A+ ++ +
Sbjct: 491 ILGEEDHLGDMDFKVAGTKNG-ITGFQMDIKISNVTKQLMKDALAQARIGRMHILSIMDS 549
Query: 237 VISN 240
VIS
Sbjct: 550 VISR 553
Score = 102 bits (254), Expect = 5e-20, Method: Composition-based stats.
Identities = 43/239 (17%), Positives = 81/239 (33%), Gaps = 32/239 (13%)
Query: 5 GRQENQMREISLTRRV-SKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----HGWI 59
GR+ ++ L + +K A G+ L +G + +L T + + +
Sbjct: 20 GRE-----DLILETGLLAKQANGAVLATYGGSTVLATVCCSDSARENLDFVPLSVEYNEK 74
Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119
G +P R G+ + + R+I R +R + D Q++
Sbjct: 75 YYAAGKIPGGFIKR------EGKPKDKEVLVSRLIDRPMRPLFDKRFGREIQVVPTTLST 128
Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179
+ A+ A+ G +AA+ L IV+ +
Sbjct: 129 DQMNPPDIVGMNAAFAAVF-------------LSDIPFNGPIAAVRIAYLNSEFIVNPSF 175
Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
E +D + G I V+G A S++ A ++ A + I + LQK+ I
Sbjct: 176 DEIQDSILDIVVAGSLDG-ITMVEGGANE--VSEEVLLAAIDQAYEYIKQICNLQKEFI 231
>gi|228940895|ref|ZP_04103454.1| Polyribonucleotide nucleotidyltransferase [Bacillus thuringiensis
serovar berliner ATCC 10792]
gi|228973824|ref|ZP_04134400.1| Polyribonucleotide nucleotidyltransferase [Bacillus thuringiensis
serovar thuringiensis str. T01001]
gi|228980413|ref|ZP_04140723.1| Polyribonucleotide nucleotidyltransferase [Bacillus thuringiensis
Bt407]
gi|228779233|gb|EEM27490.1| Polyribonucleotide nucleotidyltransferase [Bacillus thuringiensis
Bt407]
gi|228785849|gb|EEM33852.1| Polyribonucleotide nucleotidyltransferase [Bacillus thuringiensis
serovar thuringiensis str. T01001]
gi|228818731|gb|EEM64797.1| Polyribonucleotide nucleotidyltransferase [Bacillus thuringiensis
serovar berliner ATCC 10792]
gi|326941573|gb|AEA17469.1| polynucleotide phosphorylase/polyadenylase [Bacillus thuringiensis
serovar chinensis CT-43]
Length = 712
Score = 145 bits (365), Expect = 5e-33, Method: Composition-based stats.
Identities = 44/244 (18%), Positives = 85/244 (34%), Gaps = 18/244 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56
+R GR+ +++R ++ + GS L G T L+ T + ++ + +
Sbjct: 315 IRPDGRKGDEIRPLASEVGILSRTHGSGLFTRGQTQALSICTLGALGDVQILDGLGVEES 374
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y S G R+ G RAL V+ + +
Sbjct: 375 KRFMHHYNFPSFSVGETRPMRGPGRREIGHGALG----ERALEPVIPSEKDFPYTVRLVS 430
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V++++G T A+I G+ +A+ D ++ + V G + D
Sbjct: 431 EVLESNGSTSQASICGSTLAMMDAGVPLKAPVAGIAMGLVKSGE---------HYTILSD 481
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T G + +Q + S++ L AK ++
Sbjct: 482 IQGMEDHLGDMDFKVAGTAQG-VTALQMDIKIDGLSREILEEALQQAKIGRVHILNHMLS 540
Query: 237 VISN 240
VI+
Sbjct: 541 VIAE 544
Score = 114 bits (284), Expect = 1e-23, Method: Composition-based stats.
Identities = 43/231 (18%), Positives = 90/231 (38%), Gaps = 26/231 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEK---VPMWIRNTKHGWITAEYGMLP 67
R++++ ++K A G+ LV++GDT +L+TAT ++ V + + G +P
Sbjct: 15 RQLTVETGQLAKQANGAVLVRYGDTAVLSTATASKEAKNVDFFPLTVNYEERLYAVGKIP 74
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R GR ++ R+I R +R + Q++ + D +
Sbjct: 75 GGFIKR------EGRPSEKAILASRLIDRPIRPLFADGFRNEVQVVSIVMSVDQDCSSEM 128
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
AA+ G+ +A +G +A + G + G +++ + D+
Sbjct: 129 AAMLGSSLA-------------LSISDIPFEGPIAGATVGRINGEFVINPTVEQQEQSDI 175
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
T I V+ A++ ++ + D I LI Q++++
Sbjct: 176 HLVVAGTKD-AINMVEAGADQVP--EETMLEAIMFGHDEIKRLIAFQEEIV 223
>gi|15605776|ref|NP_213153.1| polynucleotide phosphorylase/polyadenylase [Aquifex aeolicus VF5]
gi|81343315|sp|O66593|PNP_AQUAE RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|2982946|gb|AAC06562.1| polyribonucleotide nucleotidyltransferase [Aquifex aeolicus VF5]
Length = 775
Score = 145 bits (365), Expect = 5e-33, Method: Composition-based stats.
Identities = 47/247 (19%), Positives = 86/247 (34%), Gaps = 21/247 (8%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEK-----VPMWIRNTK 55
+R+ GR+ N++R I + + G+ + G T T TL +
Sbjct: 312 VRIDGRKPNEIRPIWIEVHPFERPHGNAIFTRGQTQAYVTVTLGTPDEALIIETIAEGEV 371
Query: 56 HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115
Y M P S G R+ G RA+ ++ I +
Sbjct: 372 FKRFMLHYSMPPFSVGEAKPWGPPRRREIGHGAL----AERAIEPLLPPEEEYPFIIRVV 427
Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSN--KFQLSQVLKGHVAAISCGMLCGYP 173
D+++++G T A + GA +AL D M+D + + +L+ I
Sbjct: 428 SDILESNGSTSMATVCGASLALFDAGVPMKDNKHVAGIAMGLILEKDRYVILSD------ 481
Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
+ ED D+D T G I VQ + +++ L A++ +++
Sbjct: 482 ---ILGDEDHLGDMDFKVAGTKDG-ITSVQMDIKVKGITKEIMLDALKQAREGRLYILEK 537
Query: 234 QKDVISN 240
+ I
Sbjct: 538 MYEAIPE 544
Score = 111 bits (276), Expect = 1e-22, Method: Composition-based stats.
Identities = 47/235 (20%), Positives = 83/235 (35%), Gaps = 28/235 (11%)
Query: 13 EISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT----KHGWITAEYGMLP 67
I + +K +GS +V+ G T +L TA + ++ + T + + YG +P
Sbjct: 15 PIIIETGKYAKLTDGSVVVRQGGTAVLVTAVMSDEPITDVDFTPLAVDYRERASAYGRIP 74
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R G+ R + R+I R +R + I
Sbjct: 75 GGFTKR------EGKPTDREILVSRVIDRPIRPLFPEGFFHDVIITALTLSADDKYDPDV 128
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
AITGA ALH +G +A + + G + + Y + D+
Sbjct: 129 LAITGASAALH-------------ISRIPFEGPIAGVRVCRVNGEFVANPTYEQRKEADL 175
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNEV 242
D T IV V+G + ++ L D I ++I+ Q + + +V
Sbjct: 176 DIVMAGTKD-AIVMVEGGGKE--IPEEVLADALFFGLDAIKEVIEAQ-ERLREKV 226
>gi|51892669|ref|YP_075360.1| polynucleotide phosphorylase/polyadenylase [Symbiobacterium
thermophilum IAM 14863]
gi|81388937|sp|Q67P77|PNP_SYMTH RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|51856358|dbj|BAD40516.1| polynucleotide phosphorylase [Symbiobacterium thermophilum IAM
14863]
Length = 762
Score = 145 bits (365), Expect = 5e-33, Method: Composition-based stats.
Identities = 43/244 (17%), Positives = 85/244 (34%), Gaps = 16/244 (6%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56
+R GR ++R I + GS L + G T +L+ T + + + +
Sbjct: 328 IRPDGRSLTEIRPIECAVDLLPRPHGSGLFQRGQTQVLSICTLGTLGDMQKLDDLTLEET 387
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P S G R+ G RAL V+ I +
Sbjct: 388 KRFMHHYNFPPYSVGETRPLRGPGRREIGHGAL----AERALEPVIPPEEEFPYTIRVVS 443
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V++++G + A++ G+ +AL ++ + V + D
Sbjct: 444 EVLESNGSSSMASVCGSTLALMAAGVPIKAPVAGVAMGLVEDPETG-------RYAVLTD 496
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED+ D+D T G + +Q + + S++ L A++ +++
Sbjct: 497 IQGIEDALGDMDFKVAGTKKG-VTALQMDMKISGTSREILEKALMQAREGRMFIMEKMLA 555
Query: 237 VISN 240
IS
Sbjct: 556 CISE 559
Score = 101 bits (252), Expect = 7e-20, Method: Composition-based stats.
Identities = 37/236 (15%), Positives = 80/236 (33%), Gaps = 32/236 (13%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKHGWITAEYGML 66
R ++L ++K A GS LV +GD+ +L TA E V + + G +
Sbjct: 28 RTMTLETGRLAKQASGSVLVNYGDSVVLCTAVGSATPREGVDFFPLTVDYEERMYSVGRI 87
Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
P + R GR ++ R+ R +R + Q++ + D
Sbjct: 88 PGNWFRR------EGRPTSKAILWARLTDRPIRPLFPEGFRNDVQVVCTVLSVDPDHPVE 141
Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
+ GA A +G + + G++ G +++ + +
Sbjct: 142 IMGMIGASAA-------------LTISDIPFEGPIGGVIVGLVDGQFVINPTAEQQERSE 188
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIA-----DLIKLQKDV 237
+ T+ ++ V+ A+ + + + I + ++Q +V
Sbjct: 189 MHLVVAGTEH-AVLMVEAGAKEVP--EQTMLDAILFGHEVIKNTIIPTIKQMQAEV 241
>gi|237785717|ref|YP_002906422.1| polynucleotide phosphorylase/polyadenylase [Corynebacterium
kroppenstedtii DSM 44385]
gi|257096678|sp|C4LJ74|PNP_CORK4 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|237758629|gb|ACR17879.1| polyribonucleotide nucleotidyltransferase [Corynebacterium
kroppenstedtii DSM 44385]
Length = 775
Score = 145 bits (365), Expect = 5e-33, Method: Composition-based stats.
Identities = 44/244 (18%), Positives = 91/244 (37%), Gaps = 14/244 (5%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKH 56
R+ GR +R++ + + A GS L + G+T +L TL+ E+ + H
Sbjct: 391 FRIDGRGVEDIRDLDVEVDLVPRAHGSSLFQRGETQILGVTTLDTLKMEQQVDSLGPVDH 450
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P STG + + R+ G RAL+ ++ I
Sbjct: 451 RRYIHHYNFPPYSTGETGRVGSPKRREIGHGAL----AERALKPMIPSRDDFPYTIRQVS 506
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+ + ++G T ++ + ++L++ ++ + V + G + + D
Sbjct: 507 EALGSNGSTSMGSVCASTLSLYNAGVPLKAPVAGIAMGLV-----SGEVKGKMTYVTLTD 561
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED+ D+D T+ I +Q + D L A++ +++ +
Sbjct: 562 ILGAEDAFGDMDFKVAGTEDF-ITALQLDTKLDGIPSDVLAGALKQAREARLEILNTMAE 620
Query: 237 VISN 240
VI
Sbjct: 621 VIDE 624
Score = 70.6 bits (171), Expect = 2e-10, Method: Composition-based stats.
Identities = 42/266 (15%), Positives = 74/266 (27%), Gaps = 42/266 (15%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGD-THLLTTATLE----EKVPMWIRNTKHGWITAEYGM 65
R I L +++ A GS + + T +L+T T E + G
Sbjct: 45 RTIRLETGQLARQANGSVVAYLDEDTMMLSTTTASSKPREGFDFFPLTVDVEERMYAAGR 104
Query: 66 LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125
+P S R GR G + R+I R LR Q+I+ +
Sbjct: 105 IPGSFFRR------EGRPGTDAILACRLIDRPLRPTFVKGLRNEVQVIVTVMSLDPKDMY 158
Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISC------------------- 166
AI A + + +++ ++
Sbjct: 159 DVVAINAASASTQLSGLPVSGPVGGVRMALIVDDDHEDGQWVAFPTREQHESALFEMVVA 218
Query: 167 GMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATF----------SQDHF 216
G L + + + TD+ I+ V+ A ++
Sbjct: 219 GRLTDEQVPEKPRKGRRRGRKSSPRKKTDNVAIMMVEAGATETVVERVNDGAPAPTESVV 278
Query: 217 FAMLNLAKDRIADLIKLQKDVISNEV 242
+ AK IA+L Q + V
Sbjct: 279 AEGIEAAKPFIAELCGAQ-QALRQAV 303
>gi|309785491|ref|ZP_07680122.1| polyribonucleotide nucleotidyltransferase [Shigella dysenteriae
1617]
gi|187611311|sp|Q32BG9|PNP_SHIDS RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|308926611|gb|EFP72087.1| polyribonucleotide nucleotidyltransferase [Shigella dysenteriae
1617]
Length = 711
Score = 145 bits (365), Expect = 5e-33, Method: Composition-based stats.
Identities = 45/242 (18%), Positives = 92/242 (38%), Gaps = 18/242 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR+++ +R + + V GS L G+T L TATL + +V + +
Sbjct: 315 RIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVLDELMGERTD 374
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + R+ G + R + +V+ + + +
Sbjct: 375 TFLFHYNFPPYSVGETGIVGSPKRREIGHGRL----AKRGVLAVMPDMDKFPYTVRVVSE 430
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ GA +AL D ++ + V +G + +
Sbjct: 431 ITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLSD---------I 481
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D + G I +Q + +++ LN AK ++ + +
Sbjct: 482 LGDEDHLGDMDFKVAGSRDG-ISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQA 540
Query: 238 IS 239
I+
Sbjct: 541 IN 542
Score = 96.1 bits (237), Expect = 4e-18, Method: Composition-based stats.
Identities = 37/232 (15%), Positives = 76/232 (32%), Gaps = 27/232 (11%)
Query: 14 ISLTRRV-SKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----HGWITAEYGMLPR 68
++L + ++ A + +V DT + T ++K + T G +P
Sbjct: 16 VTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVNYQERTYAAGRIPG 75
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
S R GR I R+I R +R + + Q+I +
Sbjct: 76 SFFRR------EGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVNPDIV 129
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+ GA A G + A G + +++ E +D
Sbjct: 130 AMIGASAA-------------LSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLD 176
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
T++ ++ V+ AE S+D + ++ +I+ +++
Sbjct: 177 LVVAGTEA-AVLMVESEAEL--LSEDQMLGAVVFGHEQQQVVIQNINELVKE 225
>gi|117928715|ref|YP_873266.1| polynucleotide phosphorylase/polyadenylase [Acidothermus
cellulolyticus 11B]
gi|187470956|sp|A0LV20|PNP_ACIC1 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|117649178|gb|ABK53280.1| Polyribonucleotide nucleotidyltransferase [Acidothermus
cellulolyticus 11B]
Length = 782
Score = 145 bits (365), Expect = 5e-33, Method: Composition-based stats.
Identities = 42/244 (17%), Positives = 81/244 (33%), Gaps = 14/244 (5%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
+R+ GR +R ++ + GS L + G+T +L TL E+ +
Sbjct: 338 VRIDGRGLTDIRPLTAEVGIVPRVHGSALFERGETQILGVTTLNMLRMEQQLDTVSPRTK 397
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P STG + + R+ G RAL V+ I
Sbjct: 398 KRYMHHYNFPPYSTGEVGRVGSPKRREIGHGAL----AERALIPVLPSREEFPYAIRQVS 453
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+ I ++G T ++ + ++L + + + + G + D
Sbjct: 454 EAIGSNGSTSMGSVCASTLSLLNAGVPLRAPVAGIAMGLISD-----TVDGETHYVTLTD 508
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED+ D+D T + +Q + A L A++ ++ +
Sbjct: 509 ILGAEDAYGDMDFKVAGTRDF-VTALQLDTKLDGIPASVLAAALPQAREARLTILDVMAK 567
Query: 237 VISN 240
IS
Sbjct: 568 AISE 571
Score = 87.6 bits (215), Expect = 1e-15, Method: Composition-based stats.
Identities = 40/245 (16%), Positives = 70/245 (28%), Gaps = 38/245 (15%)
Query: 11 MREISLTRR-VSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKHGWITAEYGM 65
+R + +++ A GS + GDT +L+ T E+ + G
Sbjct: 20 VRTVRFETGRLARQAGGSAVAYLGDTMVLSATTASKEPREQFDFFPLTVDVEERLYAAGR 79
Query: 66 LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125
+P S R GR + R+I R LR Q+++ + +
Sbjct: 80 IPGSFFRR------EGRPSEEAILTCRLIDRPLRPSFVKGLRNEVQVVVTVLAVDPEHLY 133
Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185
AI A ++ G + + + G + Y E
Sbjct: 134 DVVAINAASMSTLLAG-------------LPFSGPIGGVRMAHIDGTWVAFPTYSELERA 180
Query: 186 DVDANFVMT----DSGHIVEVQGSAERATF----------SQDHFFAMLNLAKDRIADLI 231
D I+ V+ A T +++ L AK I L
Sbjct: 181 TFDMVVAGRVLPDGDVAIMMVEAEATEETIPLIREGAPAPTEEVVAGGLEAAKPFIRTLC 240
Query: 232 KLQKD 236
Q +
Sbjct: 241 AAQSE 245
>gi|218898959|ref|YP_002447370.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus G9842]
gi|228966752|ref|ZP_04127796.1| Polyribonucleotide nucleotidyltransferase [Bacillus thuringiensis
serovar sotto str. T04001]
gi|226702616|sp|B7IUG5|PNP_BACC2 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|218542651|gb|ACK95045.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus G9842]
gi|228792851|gb|EEM40409.1| Polyribonucleotide nucleotidyltransferase [Bacillus thuringiensis
serovar sotto str. T04001]
Length = 712
Score = 145 bits (365), Expect = 5e-33, Method: Composition-based stats.
Identities = 44/244 (18%), Positives = 85/244 (34%), Gaps = 18/244 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56
+R GR+ +++R ++ + GS L G T L+ T + ++ + +
Sbjct: 315 IRPDGRKGDEIRPLASEVGILSRTHGSGLFTRGQTQALSICTLGALGDVQILDGLGVEES 374
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y S G R+ G RAL V+ + +
Sbjct: 375 KRFMHHYNFPSFSVGETRPMRGPGRREIGHGALG----ERALEPVIPSEKDFPYTVRLVS 430
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V++++G T A+I G+ +A+ D ++ + V G + D
Sbjct: 431 EVLESNGSTSQASICGSTLAMMDAGVPLKAPVAGIAMGLVKSGE---------HYTILSD 481
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T G + +Q + S++ L AK ++
Sbjct: 482 IQGMEDHLGDMDFKVAGTAQG-VTALQMDIKIDGLSREILEEALQQAKIGRVHILNHMLS 540
Query: 237 VISN 240
VI+
Sbjct: 541 VIAE 544
Score = 114 bits (284), Expect = 1e-23, Method: Composition-based stats.
Identities = 43/231 (18%), Positives = 90/231 (38%), Gaps = 26/231 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEK---VPMWIRNTKHGWITAEYGMLP 67
R++++ ++K A G+ LV++GDT +L+TAT ++ V + + G +P
Sbjct: 15 RQLTVETGQLAKQANGAVLVRYGDTAVLSTATASKEAKNVDFFPLTVNYEERLYAVGKIP 74
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R GR ++ R+I R +R + Q++ + D +
Sbjct: 75 GGFIKR------EGRPSEKAILASRLIDRPIRPLFADGFRNEVQVVSIVMSVDQDCSSEM 128
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
AA+ G+ +A +G +A + G + G +++ + D+
Sbjct: 129 AAMLGSSLA-------------LSISDIPFEGPIAGATVGRINGEFVINPTVEQQEQSDI 175
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
T I V+ A++ ++ + D I LI Q++++
Sbjct: 176 HLVVAGTKD-AINMVEAGADQVP--EETMLEAIMFGHDEIKRLIAFQEEIV 223
>gi|108810762|ref|YP_646529.1| polynucleotide phosphorylase/polyadenylase [Yersinia pestis
Nepal516]
gi|108774410|gb|ABG16929.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis
Nepal516]
Length = 731
Score = 145 bits (365), Expect = 5e-33, Method: Composition-based stats.
Identities = 43/242 (17%), Positives = 92/242 (38%), Gaps = 18/242 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR+++ +R + + + GS L G+T L TATL + + + +
Sbjct: 341 RIDGREKDMIRGLDVRTGILPRTHGSALFTRGETQALVTATLGTARDAQNIDELMGERTD 400
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P G + R+ G + R + +V+ ++ I + +
Sbjct: 401 SFLLHYNFPPYCVGETGMVGSPKRREIGHGRL----AKRGVLAVMPSASEFPYTIRVVSE 456
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ GA +AL D ++ + V +G + +
Sbjct: 457 ITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNFVVLSD---------I 507
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D + G + +Q + +++ LN AK ++ + +
Sbjct: 508 LGDEDHLGDMDFKVAGSRDG-VTALQMDIKIEGITREIMQVALNQAKGARLHILGVMEQA 566
Query: 238 IS 239
IS
Sbjct: 567 IS 568
Score = 92.2 bits (227), Expect = 5e-17, Method: Composition-based stats.
Identities = 34/232 (14%), Positives = 76/232 (32%), Gaps = 27/232 (11%)
Query: 14 ISLTRRV-SKYAEGSCLVKFGDTHLLTTATLEEKVPM----WIRNTKHGWITAEYGMLPR 68
+++ + ++ A + +V DT + T ++K + + T G +P
Sbjct: 42 VTIETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQSFFPLTVNYQERTYAAGRIPG 101
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
S R GR R+I R +R + S L Q+I +
Sbjct: 102 SFFRR------EGRPSEGETLTSRLIDRPIRPLFPDSFLNEVQVIATVVSVNPQINPDIV 155
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+ G + G + A G + +++ E +D
Sbjct: 156 ALIG-------------ASAVLSLSGIPFNGPIGAARVGFINDQYVLNPTTDELKESRLD 202
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
T +G ++ V+ A+ S++ + ++ +I+ +++
Sbjct: 203 LVVAGT-AGAVLMVESEADI--LSEEQMLGAVVFGHEQQQVVIENINALVAE 251
>gi|228909631|ref|ZP_04073454.1| Polyribonucleotide nucleotidyltransferase [Bacillus thuringiensis
IBL 200]
gi|228849920|gb|EEM94751.1| Polyribonucleotide nucleotidyltransferase [Bacillus thuringiensis
IBL 200]
Length = 712
Score = 145 bits (365), Expect = 5e-33, Method: Composition-based stats.
Identities = 44/244 (18%), Positives = 85/244 (34%), Gaps = 18/244 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56
+R GR+ +++R ++ + GS L G T L+ T + ++ + +
Sbjct: 315 IRPDGRKGDEIRPLASEVGILSRTHGSGLFTRGQTQALSICTLGALGDVQILDGLGVEES 374
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y S G R+ G RAL V+ + +
Sbjct: 375 KRFMHHYNFPSFSVGETRPMRGPGRREIGHGALG----ERALEPVIPSEKDFPYTVRLVS 430
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V++++G T A+I G+ +A+ D ++ + V G + D
Sbjct: 431 EVLESNGSTSQASICGSTLAMMDAGVPLKAPVAGIAMGLVKSGE---------HYTILSD 481
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T G + +Q + S++ L AK ++
Sbjct: 482 IQGMEDHLGDMDFKVAGTAQG-VTALQMDIKIDGLSREILEEALQQAKIGRVHILNHMLS 540
Query: 237 VISN 240
VI+
Sbjct: 541 VIAE 544
Score = 114 bits (284), Expect = 1e-23, Method: Composition-based stats.
Identities = 43/231 (18%), Positives = 90/231 (38%), Gaps = 26/231 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEK---VPMWIRNTKHGWITAEYGMLP 67
R++++ ++K A G+ LV++GDT +L+TAT ++ V + + G +P
Sbjct: 15 RQLTVETGQLAKQANGAVLVRYGDTAVLSTATASKEAKNVDFFPLTVNYEERLYAVGKIP 74
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R GR ++ R+I R +R + Q++ + D +
Sbjct: 75 GGFIKR------EGRPSEKAILASRLIDRPIRPLFADGFRNEVQVVSIVMSVDQDCSSEM 128
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
AA+ G+ +A +G +A + G + G +++ + D+
Sbjct: 129 AAMLGSSLA-------------LSISDIPFEGPIAGATVGRINGEFVINPTVEQQEQSDI 175
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
T I V+ A++ ++ + D I LI Q++++
Sbjct: 176 HLVVAGTKD-AINMVEAGADQVP--EETMLEAIMFGHDEIKRLIAFQEEIV 223
>gi|300721542|ref|YP_003710817.1| polynucleotide phosphorylase [Xenorhabdus nematophila ATCC 19061]
gi|297628034|emb|CBJ88583.1| polynucleotide phosphorylase, has polyadenylase activity
[Xenorhabdus nematophila ATCC 19061]
Length = 712
Score = 145 bits (365), Expect = 5e-33, Method: Composition-based stats.
Identities = 44/243 (18%), Positives = 93/243 (38%), Gaps = 18/243 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR+++ +R + + V GS L G+T L ATL + +V + +
Sbjct: 319 RIDGREKDMVRALDVRTGVLPRTHGSSLFTRGETQALVAATLGTERDAQVIDELMGERTD 378
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + R+ G + R + +V+ ++ + + +
Sbjct: 379 RFLFHYNFPPYSVGETGMVGSPKRREIGHGRL----AKRGVLAVMPNASEFPYTVRVVSE 434
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ GA +AL D ++ + V +G + +
Sbjct: 435 ITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNFVVLSD---------I 485
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D + G I +Q + +++ LN AK ++ + +
Sbjct: 486 LGDEDHLGDMDFKVAGSRDG-ISALQMDIKIEGITREIMQIALNQAKGARLHILSVMEQA 544
Query: 238 ISN 240
I +
Sbjct: 545 IES 547
Score = 89.5 bits (220), Expect = 3e-16, Method: Composition-based stats.
Identities = 39/227 (17%), Positives = 75/227 (33%), Gaps = 27/227 (11%)
Query: 14 ISLTRRV-SKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----HGWITAEYGMLPR 68
+++ + ++ A + +V DT + T ++K+ + T G +P
Sbjct: 16 VTIETGMMARQATAAVMVNMDDTAVFVTVVGQKKMKPGQDFFPLTVNYQERTYAAGRIPG 75
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
S R GR G + R+I R LR + L QII +
Sbjct: 76 SFFRR------EGRPGEGETLVARLIDRPLRPLFPEGFLNEVQIIATVVSVNPQVNPDIV 129
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+ GA A G + A G + +++ E +D
Sbjct: 130 AMIGASAA-------------LALSGIPFNGPIGAARVGYINDQYVLNPTSDELKNSRLD 176
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
T+S ++ V+ AE ++D + ++ +I+
Sbjct: 177 LVVAGTES-AVLMVESEAEL--LTEDQMLGAVVFGHEQQQIVIENIN 220
>gi|242373566|ref|ZP_04819140.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus
epidermidis M23864:W1]
gi|242348929|gb|EES40531.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus
epidermidis M23864:W1]
Length = 699
Score = 145 bits (365), Expect = 5e-33, Method: Composition-based stats.
Identities = 44/242 (18%), Positives = 85/242 (35%), Gaps = 18/242 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56
+R GR+ +++R + + GS L G T L+ T + ++ +
Sbjct: 318 IRPDGRKVDEIRPLDSEVGLLPRVHGSGLFTRGQTQALSVLTLGALGDYQLIDGLGPEVE 377
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y S G A R+ G RALR ++ + I I
Sbjct: 378 KRFMHHYNFPNFSVGETGPVRAPGRREIGHGALG----ERALRYIIPDTTDFPYTIRIVS 433
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V++++G + A+I G+ +AL D ++ + V + + D
Sbjct: 434 EVLESNGSSSQASICGSTLALMDAGVPIKAPVAGIAMGLVTRDD---------SYTILTD 484
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED+ D+D T G I +Q + +++ L A+ ++
Sbjct: 485 IQGMEDALGDMDFKVAGTKEG-ITAIQMDIKIDGLTREVIEEALEQARQGRLAIMDHMLQ 543
Query: 237 VI 238
I
Sbjct: 544 TI 545
Score = 110 bits (275), Expect = 2e-22, Method: Composition-based stats.
Identities = 42/231 (18%), Positives = 84/231 (36%), Gaps = 26/231 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKV---PMWIRNTKHGWITAEYGMLP 67
R +++ ++K A G+ LV++GDT +L+TAT ++ + + G +P
Sbjct: 15 RSLTIETGQLAKQANGAVLVRYGDTVVLSTATASKEPRDGDFFPLTVNYEEKMYAAGKIP 74
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R GR G + R+I R +R + QI+ D
Sbjct: 75 GGFKKR------EGRPGDEATLTARLIDRPIRPLFPKGYRHDVQIMNIVLSADPDCSPEM 128
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
AA+ G+ +A +G +A ++ G + G +++ E +
Sbjct: 129 AAMIGSSMA-------------LSVSDIPFQGPIAGVNVGYVDGNYVINPSVSEKEVSRL 175
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
D + V+ A ++ + + I L+ Q+++I
Sbjct: 176 DLEVAGHKD-AVNMVEAGASE--ITESEMLEAIFFGHEEIKRLVAFQQEII 223
>gi|145632472|ref|ZP_01788206.1| polynucleotide phosphorylase/polyadenylase [Haemophilus influenzae
3655]
gi|144986667|gb|EDJ93219.1| polynucleotide phosphorylase/polyadenylase [Haemophilus influenzae
3655]
Length = 709
Score = 145 bits (365), Expect = 5e-33, Method: Composition-based stats.
Identities = 42/241 (17%), Positives = 87/241 (36%), Gaps = 18/241 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR + +R + + V GS + G+T L ATL + ++ + +
Sbjct: 314 RIDGRTVDTVRALDICTGVLPRTHGSAIFTRGETQALAVATLGTERDAQIIDELTGERQD 373
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + R+ G + R + +V+ A + + +
Sbjct: 374 HFLFHYNFPPYSVGETGMIGSPKRREIGHGRL----AKRGVAAVMPSLAEFPYVVRVVSE 429
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ GA +AL D ++ + V + + +
Sbjct: 430 ITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEEDKFVVLSD---------I 480
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T G + +Q + + + LN AK ++ + +
Sbjct: 481 LGDEDHLGDMDFKVAGTREG-VTALQMDIKIEGITPEIMQIALNQAKSARMHILGVMEQA 539
Query: 238 I 238
I
Sbjct: 540 I 540
Score = 91.1 bits (224), Expect = 1e-16, Method: Composition-based stats.
Identities = 32/228 (14%), Positives = 70/228 (30%), Gaps = 27/228 (11%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----HGWITAEYGMLPR 68
++L +++ A + + DT + T ++ V + T G +P
Sbjct: 15 VTLETGAIARQATAAVMASMDDTTVFVTVVAKKDVKEGQDFFPLTVNYQERTYAAGKIPG 74
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
R GR I R+I R +R + Q++ +
Sbjct: 75 GFFKR------EGRPSEGETLIARLIDRPIRPLFPEGFFNEIQVVATVVSVNPQISPDLV 128
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+ GA A G + A G + +++ E +D
Sbjct: 129 AMIGASAA-------------LTLSGVPFNGPIGAARVGFIDNQFVLNPTMAEQKQSRLD 175
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
T ++ V+ +E +++ A + + +++ K+
Sbjct: 176 LVVAGT-DKAVLMVE--SEADVLTEEQMLAAVVFGHQQQQVVVEAIKE 220
>gi|187610329|sp|A7MIN6|PNP_ENTS8 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
Length = 711
Score = 145 bits (365), Expect = 5e-33, Method: Composition-based stats.
Identities = 44/242 (18%), Positives = 91/242 (37%), Gaps = 18/242 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVP----MWIRNTKHG 57
R+ GR+++ +R + + V GS L G+T L TATL + + +
Sbjct: 318 RIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTERDAQNIDELMGERTD 377
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + R+ G + R + +V+ + + + +
Sbjct: 378 RFLFHYNFPPYSVGETGMVGSPKRREIGHGRL----AKRGVLAVMPAADRFPYTVRVVSE 433
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ GA +AL D ++ + V +G + +
Sbjct: 434 ITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGENFVVLSD---------I 484
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D + G I +Q + +++ LN AK ++ + +
Sbjct: 485 LGDEDHLGDMDFKVAGSREG-ITALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQA 543
Query: 238 IS 239
I+
Sbjct: 544 IN 545
Score = 94.5 bits (233), Expect = 1e-17, Method: Composition-based stats.
Identities = 39/232 (16%), Positives = 75/232 (32%), Gaps = 27/232 (11%)
Query: 14 ISLTRRV-SKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----HGWITAEYGMLPR 68
++L + ++ A + +V DT + T +K + T G +P
Sbjct: 16 VTLETGMMARQATAAVMVSMDDTAVFVTVVGAKKAKPGQDFFPLTINYQERTYAAGRIPG 75
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
R GR I R+I R LR + + Q+I +
Sbjct: 76 GFFRR------EGRPSEGETLIARLIDRPLRPLFPEGFVNEVQVIATVVSVNPQVNPDIV 129
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+ GA A G + A G + +++ E + +D
Sbjct: 130 AMIGASAA-------------LSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKSSKLD 176
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
T+S ++ V+ AE S+D + ++ +I+ D++
Sbjct: 177 LVVAGTES-AVLMVESEAEL--LSEDQMLGAVVFGHEQQQVVIQNINDLVKE 225
>gi|167855122|ref|ZP_02477894.1| polyribonucleotide nucleotidyltransferase [Haemophilus parasuis
29755]
gi|219870717|ref|YP_002475092.1| polynucleotide phosphorylase/polyadenylase [Haemophilus parasuis
SH0165]
gi|254782722|sp|B8F492|PNP_HAEPS RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|167853757|gb|EDS24999.1| polyribonucleotide nucleotidyltransferase [Haemophilus parasuis
29755]
gi|219690921|gb|ACL32144.1| polynucleotide phosphorylase/polyadenylase [Haemophilus parasuis
SH0165]
Length = 709
Score = 145 bits (365), Expect = 5e-33, Method: Composition-based stats.
Identities = 43/241 (17%), Positives = 88/241 (36%), Gaps = 18/241 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR + +R + + V GS L G+T L ATL + ++ + K
Sbjct: 314 RIDGRTVDTVRALDICTGVLPRTHGSALFTRGETQALAVATLGTERDAQIIDELTGEKSD 373
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + + R+ G + R + +V+ + + + +
Sbjct: 374 RFLFHYNFPPYSVGETGRIGSPKRREIGHGRL----AKRGVLAVMPTAEEFPYVVRVVSE 429
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ GA +AL D ++ + V + + +
Sbjct: 430 ITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEEEKFVVLSD---------I 480
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T G + +Q + + + LN AK ++ + +
Sbjct: 481 LGDEDHLGDMDFKVAGTREG-VTALQMDIKIEGITPEIMRIALNQAKGARMHILGVMEQA 539
Query: 238 I 238
I
Sbjct: 540 I 540
Score = 91.4 bits (225), Expect = 1e-16, Method: Composition-based stats.
Identities = 34/232 (14%), Positives = 74/232 (31%), Gaps = 27/232 (11%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKV----PMWIRNTKHGWITAEYGMLPR 68
++L +++ A + + DT + T +++V + + T G +P
Sbjct: 15 VTLETGAIARQATAAVMASMDDTTVFVTVVAKKEVNEGQDFFPLTVDYQERTYAAGRIPG 74
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
R GR I R+I R +R + Q+I +
Sbjct: 75 GFFKR------EGRPSEGETLIARLIDRPVRPLFPEGFFNEIQVIATVVSVNPQISPDLV 128
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+ GA A G + A G + +++ E +D
Sbjct: 129 AMIGASAA-------------LSLSGVPFNGPIGAARVGFIDNQFVLNPTTSEQRLSRLD 175
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
T ++ V+ A+ +++ A + ++ +I+ K+ +
Sbjct: 176 LVVAGT-DKAVLMVESEADI--LTEEQMLAAVVFGHEQQQVVIENIKEFVKE 224
>gi|163783568|ref|ZP_02178558.1| polyribonucleotide nucleotidyltransferase [Hydrogenivirga sp.
128-5-R1-1]
gi|159881188|gb|EDP74702.1| polyribonucleotide nucleotidyltransferase [Hydrogenivirga sp.
128-5-R1-1]
Length = 773
Score = 145 bits (365), Expect = 5e-33, Method: Composition-based stats.
Identities = 44/247 (17%), Positives = 82/247 (33%), Gaps = 21/247 (8%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWI-----RNTK 55
+R+ GR+ ++R IS+ + G + G T T TL +
Sbjct: 310 VRIDGRKPEEIRPISIEIHPFERPHGCAVFTRGQTQAYVTVTLGAPDEAQLIETIAEGEV 369
Query: 56 HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115
Y P S G R+ G RAL V+ I +
Sbjct: 370 FKRFMLHYNFPPFSGGEARSWGPPRRREIGHGAL----AERALEPVIPEEDDFPYIIRVV 425
Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHME--DCSNKFQLSQVLKGHVAAISCGMLCGYP 173
D+++++G T A + G +AL D ++ + + + +G I
Sbjct: 426 SDILESNGSTSMATVCGGSLALFDAGVPIKGGKHVSGIAMGLIKEGDRYVILSD------ 479
Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
+ ED D+D T G + +Q + +++ L AK+ +++
Sbjct: 480 ---ILGDEDHLGDMDFKVAGTREG-VTSIQMDIKIKGITKEIMTEALKQAKEGRLYILEK 535
Query: 234 QKDVISN 240
+ I
Sbjct: 536 MYEAIPE 542
Score = 109 bits (272), Expect = 4e-22, Method: Composition-based stats.
Identities = 46/235 (19%), Positives = 82/235 (34%), Gaps = 28/235 (11%)
Query: 13 EISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEE----KVPMWIRNTKHGWITAEYGMLP 67
I + +K A+G+ +V+ G T +L TA + + ++ + + YG +P
Sbjct: 13 PIVIEVGRYAKQADGAVVVRQGGTAVLVTAVMSDEPNTEIDFTPLTVDYRERPSAYGRIP 72
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R G+ R R+I R LR + + +
Sbjct: 73 GGFVKR------EGKPSEREVLASRVIDRPLRPLFPEGFFHDVVVTALTLSADDNYDPDV 126
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
AITGA ALH +G +A + + G + + Y E D+
Sbjct: 127 LAITGASAALH-------------ISRIPFEGPIAGVRVCKVGGEFVANPTYEERKDADL 173
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNEV 242
+ T IV V+G A+ ++ L + I + I LQ+ + +
Sbjct: 174 EIVMAGTKD-AIVMVEGGAKEVP--EEVITEALFFGHEAIQEAIALQEK-LRESI 224
>gi|320333541|ref|YP_004170252.1| polyribonucleotide nucleotidyltransferase [Deinococcus maricopensis
DSM 21211]
gi|319754830|gb|ADV66587.1| Polyribonucleotide nucleotidyltransferase [Deinococcus maricopensis
DSM 21211]
Length = 718
Score = 145 bits (365), Expect = 5e-33, Method: Composition-based stats.
Identities = 49/242 (20%), Positives = 91/242 (37%), Gaps = 18/242 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
+R GR +R I + GS + G+T +L T TL +E + + + K+
Sbjct: 317 VRADGRNSRTVRPIWIETHALPRPHGSAIFTRGETQVLGTTTLGTERDEILIDDLTDDKN 376
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P STG + S R+ G RA+R+V+ I I
Sbjct: 377 DRFMLHYNFPPYSTGEVKRMSGQSRREVGHGNL----AKRAIRAVLPSFEEFPYVIRIVG 432
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
DV++++G + A + ++L D ++ + V++G + D
Sbjct: 433 DVLESNGSSSMATVCAGTLSLMDAGVPIKAPVAGVAMGLVMEGD---------RYRVLTD 483
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED+ D+D T G + +Q + + L AK+ ++ +
Sbjct: 484 ILGLEDALGDMDFKVCGTAEG-VTALQMDIKIQGITPAIMREALAQAKEARLHILGKMAE 542
Query: 237 VI 238
V+
Sbjct: 543 VL 544
Score = 88.7 bits (218), Expect = 6e-16, Method: Composition-based stats.
Identities = 47/229 (20%), Positives = 76/229 (33%), Gaps = 26/229 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKV---PMWIRNTKHGWITAEYGMLP 67
RE++L ++K G+ V++GD LL TA E V + G +P
Sbjct: 13 RELTLETGKLAKLVSGAVTVRYGDAVLLVTAQAREDVSPLDFLPLTVEFEERHYAVGRIP 72
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
S R GR G R+ R+ R +R + Q+II A G
Sbjct: 73 GSFHRR------EGRPGERAILSARITDRQIRPLFPKGYRHETQVIITVLSADAQVGADV 126
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
GA A G A + G + G +V+ Y + +
Sbjct: 127 LGPIGASAA-------------LSLSDVPWAGPTACVRVGFVGGEYVVNPTYDQLDASSL 173
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
D T I+ V+ A+ ++ + A + +I L +
Sbjct: 174 DLVVAGTRD-AILMVEAGAQVVE--EELLVGAIEFAHREMQPIIDLIEQ 219
>gi|260596206|ref|YP_003208777.1| polynucleotide phosphorylase/polyadenylase [Cronobacter turicensis
z3032]
gi|260215383|emb|CBA27411.1| Polyribonucleotide nucleotidyltransferase [Cronobacter turicensis
z3032]
Length = 711
Score = 145 bits (365), Expect = 5e-33, Method: Composition-based stats.
Identities = 44/242 (18%), Positives = 91/242 (37%), Gaps = 18/242 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVP----MWIRNTKHG 57
R+ GR+++ +R + + V GS L G+T L TATL + + +
Sbjct: 318 RIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTERDAQNIDELMGERTD 377
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + R+ G + R + +V+ + + + +
Sbjct: 378 RFLFHYNFPPYSVGETGMVGSPKRREIGHGRL----AKRGVLAVMPAADRFPYTVRVVSE 433
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ GA +AL D ++ + V +G + +
Sbjct: 434 ITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGENFVVLSD---------I 484
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D + G I +Q + +++ LN AK ++ + +
Sbjct: 485 LGDEDHLGDMDFKVAGSREG-ITALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQA 543
Query: 238 IS 239
I+
Sbjct: 544 IN 545
Score = 94.5 bits (233), Expect = 1e-17, Method: Composition-based stats.
Identities = 39/232 (16%), Positives = 74/232 (31%), Gaps = 27/232 (11%)
Query: 14 ISLTRRV-SKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----HGWITAEYGMLPR 68
++L + ++ A + +V DT + T +K + T G +P
Sbjct: 16 VTLETGMMARQATAAVMVSMDDTAVFVTVVGAKKAKPGQDFFPLTINYQERTYAAGRIPG 75
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
R GR I R+I R LR + + Q+I +
Sbjct: 76 GFFRR------EGRPSEGETLIARLIDRPLRPLFPEGFVNEVQVIATVVSVNPQVNPDIV 129
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+ GA A G + A G + +++ E +D
Sbjct: 130 AMIGASAA-------------LSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKASKLD 176
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
T+S ++ V+ AE S+D + ++ +I+ D++
Sbjct: 177 LVVAGTES-AVLMVESEAEL--LSEDQMLGAVVFGHEQQQVVIQNINDLVKE 225
>gi|228902310|ref|ZP_04066467.1| Polyribonucleotide nucleotidyltransferase [Bacillus thuringiensis
IBL 4222]
gi|228857279|gb|EEN01782.1| Polyribonucleotide nucleotidyltransferase [Bacillus thuringiensis
IBL 4222]
Length = 712
Score = 145 bits (365), Expect = 5e-33, Method: Composition-based stats.
Identities = 44/244 (18%), Positives = 85/244 (34%), Gaps = 18/244 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56
+R GR+ +++R ++ + GS L G T L+ T + ++ + +
Sbjct: 315 IRPDGRKGDEIRPLASEVGILSRTHGSGLFTRGQTQALSICTLGALGDVQILDGLGVEES 374
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y S G R+ G RAL V+ + +
Sbjct: 375 KRFMHHYNFPSFSVGETRPMRGPGRREIGHGALG----ERALEPVIPSEKDFPYTVRLVS 430
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V++++G T A+I G+ +A+ D ++ + V G + D
Sbjct: 431 EVLESNGSTSQASICGSTLAMMDAGVPLKAPVAGIAMGLVKSGE---------HYTILSD 481
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T G + +Q + S++ L AK ++
Sbjct: 482 IQGMEDHLGDMDFKVAGTAQG-VTALQMDIKIDGLSREILEEALQQAKIGRVHILNHMLS 540
Query: 237 VISN 240
VI+
Sbjct: 541 VIAE 544
Score = 114 bits (284), Expect = 1e-23, Method: Composition-based stats.
Identities = 43/231 (18%), Positives = 90/231 (38%), Gaps = 26/231 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEK---VPMWIRNTKHGWITAEYGMLP 67
R++++ ++K A G+ LV++GDT +L+TAT ++ V + + G +P
Sbjct: 15 RQLTVETGQLAKQANGAVLVRYGDTAVLSTATASKEAKNVDFFPLTVNYEERLYAVGKIP 74
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R GR ++ R+I R +R + Q++ + D +
Sbjct: 75 GGFIKR------EGRPSEKAILASRLIDRPIRPLFADGFRNEVQVVSIVMSVDQDCSSEM 128
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
AA+ G+ +A +G +A + G + G +++ + D+
Sbjct: 129 AAMLGSSLA-------------LSISDIPFEGPIAGATVGRINGEFVINPTVEQQEQSDI 175
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
T I V+ A++ ++ + D I LI Q++++
Sbjct: 176 HLVVAGTKD-AINMVEAGADQVP--EETMLEAIMFGHDEIKRLIAFQEEIV 223
>gi|154490390|ref|ZP_02030651.1| hypothetical protein PARMER_00623 [Parabacteroides merdae ATCC
43184]
gi|154089001|gb|EDN88045.1| hypothetical protein PARMER_00623 [Parabacteroides merdae ATCC
43184]
Length = 743
Score = 145 bits (365), Expect = 5e-33, Method: Composition-based stats.
Identities = 49/240 (20%), Positives = 85/240 (35%), Gaps = 18/240 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
RL GR+ ++R I + GS + G+T L+T TL +EK+ + N
Sbjct: 319 RLDGRKTTEIRPIWIETDCLPGPHGSAIFTRGETQSLSTVTLGTKADEKMIDDVLNHGKE 378
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P STG V R+ G RAL+ ++ ++I D
Sbjct: 379 RFLLHYNFPPFSTGEAKASRGVGRREIGHGNL----AHRALKRMIPTDYPYVVRVISDIL 434
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+++G + A + +AL D M+ + + + + + D+
Sbjct: 435 --ESNGSSSMATVCAGTLALRDAGVPMKKPVSGIAMGLISE-------NKGQNYAILSDI 485
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T G I Q + S + L AK+ ++ +
Sbjct: 486 LGDEDHLGDMDFKVTGTKDG-ITATQMDIKVDGLSYEILENALAQAKEGRMHILGKIMEA 544
Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats.
Identities = 35/232 (15%), Positives = 73/232 (31%), Gaps = 27/232 (11%)
Query: 10 QMREISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----HGWITAEYG 64
R I++ ++K A+G+ V+ G+T LL T + + + + +G
Sbjct: 13 DGRTITIETGKLAKQADGAVTVRMGNTVLLATVCAAKDANPGVDFMPLQVEYKEKFSAFG 72
Query: 65 MLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGG 124
P R G+ R++ RALR + +
Sbjct: 73 RFPGGFTKR------EGKASDYEILTSRLVDRALRPLFPDNYHAEVY------------- 113
Query: 125 TRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDST 184
+ + D L + + G ++ + G +V+ + E
Sbjct: 114 VNVILFSADGEDMPDALAGLAASAALAVSDIPFNGPISECRVARIDGKYVVNPTFSELEK 173
Query: 185 IDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
D+D T +I+ V+ E + + +A + I + Q +
Sbjct: 174 ADIDIMVGAT-LDNIMMVE--GEMDEVQESEMLEAIKVAHEAIKVQCQAQLE 222
>gi|22124608|ref|NP_668031.1| polynucleotide phosphorylase/polyadenylase [Yersinia pestis KIM 10]
gi|45440447|ref|NP_991986.1| polynucleotide phosphorylase/polyadenylase [Yersinia pestis biovar
Microtus str. 91001]
gi|167399496|ref|ZP_02305020.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis biovar
Antiqua str. UG05-0454]
gi|21957412|gb|AAM84282.1|AE013671_9 polynucleotide phosphorylase [Yersinia pestis KIM 10]
gi|45435304|gb|AAS60863.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis biovar
Microtus str. 91001]
gi|167052000|gb|EDR63408.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis biovar
Antiqua str. UG05-0454]
Length = 737
Score = 145 bits (365), Expect = 5e-33, Method: Composition-based stats.
Identities = 43/242 (17%), Positives = 92/242 (38%), Gaps = 18/242 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR+++ +R + + + GS L G+T L TATL + + + +
Sbjct: 347 RIDGREKDMIRGLDVRTGILPRTHGSALFTRGETQALVTATLGTARDAQNIDELMGERTD 406
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P G + R+ G + R + +V+ ++ I + +
Sbjct: 407 SFLLHYNFPPYCVGETGMVGSPKRREIGHGRL----AKRGVLAVMPSASEFPYTIRVVSE 462
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ GA +AL D ++ + V +G + +
Sbjct: 463 ITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNFVVLSD---------I 513
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D + G + +Q + +++ LN AK ++ + +
Sbjct: 514 LGDEDHLGDMDFKVAGSRDG-VTALQMDIKIEGITREIMQVALNQAKGARLHILGVMEQA 572
Query: 238 IS 239
IS
Sbjct: 573 IS 574
Score = 93.0 bits (229), Expect = 3e-17, Method: Composition-based stats.
Identities = 36/232 (15%), Positives = 77/232 (33%), Gaps = 27/232 (11%)
Query: 14 ISLTRRV-SKYAEGSCLVKFGDTHLLTTATLEEKVPM----WIRNTKHGWITAEYGMLPR 68
+++ + ++ A + +V DT + T ++K + + T G +P
Sbjct: 48 VTIETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQSFFPLTVNYQERTYAAGRIPG 107
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
S R GR R+I R +R + S L Q+I +
Sbjct: 108 SFFRR------EGRPSEGETLTSRLIDRPIRPLFPDSFLNEVQVIATVVSVNPQINPDIV 161
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+ GA A G + A G + +++ E +D
Sbjct: 162 ALIGASAA-------------LSLSGIPFNGPIGAARVGFINDQYVLNPTTDELKESRLD 208
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
T +G ++ V+ A+ S++ + ++ +I+ +++
Sbjct: 209 LVVAGT-AGAVLMVESEADI--LSEEQMLGAVVFGHEQQQVVIENINALVAE 257
>gi|319939878|ref|ZP_08014233.1| polyribonucleotide nucleotidyltransferase [Streptococcus anginosus
1_2_62CV]
gi|319810889|gb|EFW07208.1| polyribonucleotide nucleotidyltransferase [Streptococcus anginosus
1_2_62CV]
Length = 726
Score = 145 bits (365), Expect = 5e-33, Method: Composition-based stats.
Identities = 43/242 (17%), Positives = 80/242 (33%), Gaps = 18/242 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56
+R GR+ +++R + GS L G T L+ T E ++ +
Sbjct: 317 IRPDGRKVDEIRPLDAEIDYLPRVHGSGLFTRGQTQALSVLTLAPMGETQIVDGLDPEYK 376
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y S G + A R+ G RAL V+ I +
Sbjct: 377 KRFMHHYNFPQYSVGETGRYGAPGRREIGHGALG----ERALAQVLPSLEEFPYAIRLVA 432
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V++++G + A+I +AL ++ + + + D
Sbjct: 433 EVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISD---------GSNYTILTD 483
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T G I +Q + + + L AK +++ L +
Sbjct: 484 IQGLEDHFGDMDFKVAGTREG-ITALQMDIKIEGITAEILQEALAQAKKARFEILDLIER 542
Query: 237 VI 238
I
Sbjct: 543 TI 544
Score = 107 bits (266), Expect = 2e-21, Method: Composition-based stats.
Identities = 41/231 (17%), Positives = 85/231 (36%), Gaps = 26/231 (11%)
Query: 13 EISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKV---PMWIRNTKHGWITAEYGMLPR 68
++ + V+K A GS +V++G++ +LT A + +K+ + + G P
Sbjct: 14 DLVVETGQVAKQANGSVVVRYGESTVLTAAVMSKKMATGDFFPLQVNYEEKMYAAGKYPG 73
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
R GR + R+I R +R + Q+I AD A
Sbjct: 74 GFNKR------EGRPSTDATLTARLIDRPIRPMFADGFRNEVQVINTVLSYDADASAPMA 127
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+ G+ +A G +A + G + G +++ + ++
Sbjct: 128 AMFGSSLA-------------LSISDIPFNGPIAGVQVGYVNGELVINPSQEQKEASLLE 174
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
T I V+ A+ S++ L + + +LI Q+++++
Sbjct: 175 LTVAGTKE-AINMVESGAKE--LSEELMLEALLKGHEAVKELIAFQEEIVA 222
>gi|218259530|ref|ZP_03475243.1| hypothetical protein PRABACTJOHN_00901 [Parabacteroides johnsonii
DSM 18315]
gi|218225061|gb|EEC97711.1| hypothetical protein PRABACTJOHN_00901 [Parabacteroides johnsonii
DSM 18315]
Length = 743
Score = 145 bits (365), Expect = 5e-33, Method: Composition-based stats.
Identities = 49/240 (20%), Positives = 85/240 (35%), Gaps = 18/240 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
RL GR+ ++R I + GS + G+T L+T TL +EK+ + N
Sbjct: 319 RLDGRKTTEIRPIWIETDCLPGPHGSAIFTRGETQSLSTVTLGTKADEKMIDDVLNHGKE 378
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P STG V R+ G RAL+ ++ ++I D
Sbjct: 379 RFLLHYNFPPFSTGEAKASRGVGRREIGHGNL----AHRALKRMIPTDYPYVVRVISDIL 434
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+++G + A + +AL D M+ + + + + + D+
Sbjct: 435 --ESNGSSSMATVCAGTLALRDAGVPMKKPVSGIAMGLISE-------NKGQNYAILSDI 485
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T G I Q + S + L AK+ ++ +
Sbjct: 486 LGDEDHLGDMDFKVTGTKDG-ITATQMDIKVDGLSYEILENALAQAKEGRMHILGKIMEA 544
Score = 99.5 bits (246), Expect = 4e-19, Method: Composition-based stats.
Identities = 35/232 (15%), Positives = 73/232 (31%), Gaps = 27/232 (11%)
Query: 10 QMREISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----HGWITAEYG 64
R I++ ++K A+G+ V+ G+T LL T + + + + +G
Sbjct: 13 DGRTITIETGKLAKQADGAVTVRMGNTVLLATVCAAKDANPGVDFMPLQVEYKEKFSAFG 72
Query: 65 MLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGG 124
P R G+ R++ RALR + +
Sbjct: 73 RFPGGFTKR------EGKASDYEILTSRLVDRALRPLFPDNYHAEVY------------- 113
Query: 125 TRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDST 184
+ + D L + + G ++ + G +V+ + E
Sbjct: 114 VNVILFSADGEDMPDALAGLAASAALAVSDIPFNGPISECRVARIDGKYVVNPTFSELEK 173
Query: 185 IDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
D+D T +I+ V+ E + + +A + I + Q +
Sbjct: 174 ADIDIMVGAT-LDNIMMVE--GEMDEVQESEMLEAIKVAHEAIKIQCQAQLE 222
>gi|156935691|ref|YP_001439607.1| polynucleotide phosphorylase/polyadenylase [Cronobacter sakazakii
ATCC BAA-894]
gi|156533945|gb|ABU78771.1| hypothetical protein ESA_03557 [Cronobacter sakazakii ATCC BAA-894]
Length = 690
Score = 145 bits (365), Expect = 5e-33, Method: Composition-based stats.
Identities = 44/242 (18%), Positives = 91/242 (37%), Gaps = 18/242 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVP----MWIRNTKHG 57
R+ GR+++ +R + + V GS L G+T L TATL + + +
Sbjct: 297 RIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTERDAQNIDELMGERTD 356
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + R+ G + R + +V+ + + + +
Sbjct: 357 RFLFHYNFPPYSVGETGMVGSPKRREIGHGRL----AKRGVLAVMPAADRFPYTVRVVSE 412
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ GA +AL D ++ + V +G + +
Sbjct: 413 ITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGENFVVLSD---------I 463
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D + G I +Q + +++ LN AK ++ + +
Sbjct: 464 LGDEDHLGDMDFKVAGSREG-ITALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQA 522
Query: 238 IS 239
I+
Sbjct: 523 IN 524
Score = 89.5 bits (220), Expect = 4e-16, Method: Composition-based stats.
Identities = 38/225 (16%), Positives = 72/225 (32%), Gaps = 26/225 (11%)
Query: 20 VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----HGWITAEYGMLPRSTGNRVK 75
+++ A + +V DT + T +K + T G +P R
Sbjct: 2 MARQATAAVMVSMDDTAVFVTVVGAKKAKPGQDFFPLTINYQERTYAAGRIPGGFFRR-- 59
Query: 76 REAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWV 135
GR I R+I R LR + + Q+I + A+ GA
Sbjct: 60 ----EGRPSEGETLIARLIDRPLRPLFPEGFVNEVQVIATVVSVNPQVNPDIVAMIGASA 115
Query: 136 ALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTD 195
A G + A G + +++ E + +D T+
Sbjct: 116 A-------------LSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKSSKLDLVVAGTE 162
Query: 196 SGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
S ++ V+ AE S+D + ++ +I+ D++
Sbjct: 163 S-AVLMVESEAEL--LSEDQMLGAVVFGHEQQQVVIQNINDLVKE 204
>gi|82545596|ref|YP_409543.1| polynucleotide phosphorylase/polyadenylase [Shigella boydii Sb227]
gi|81247007|gb|ABB67715.1| polynucleotide phosphorylase [Shigella boydii Sb227]
Length = 734
Score = 145 bits (365), Expect = 5e-33, Method: Composition-based stats.
Identities = 45/242 (18%), Positives = 93/242 (38%), Gaps = 18/242 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR+++ +R + + V GS L G+T L TATL + +V + +
Sbjct: 338 RIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVLDELMGERTD 397
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + R+ G + R++ +V+ + + +
Sbjct: 398 TFLFHYNFPPYSVGETGMVGSPKRREIGHGRL----AKRSVLAVMPDMDKFPYTVRVVSE 453
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ GA +AL D ++ + V +G + +
Sbjct: 454 ITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLSD---------I 504
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D + G I +Q + +++ LN AK ++ + +
Sbjct: 505 LGDEDHLGDMDFKVAGSREG-ISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQA 563
Query: 238 IS 239
I+
Sbjct: 564 IN 565
Score = 95.7 bits (236), Expect = 5e-18, Method: Composition-based stats.
Identities = 37/232 (15%), Positives = 76/232 (32%), Gaps = 27/232 (11%)
Query: 14 ISLTRRV-SKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----HGWITAEYGMLPR 68
++L + ++ A + +V DT + T ++K + T G +P
Sbjct: 39 VTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVNYQERTYAAGRIPG 98
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
S R GR I R+I R +R + + Q+I +
Sbjct: 99 SFFRR------EGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVNPDIV 152
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+ GA A G + A G + +++ E +D
Sbjct: 153 AMIGASAA-------------LSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLD 199
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
T++ ++ V+ AE S+D + ++ +I+ +++
Sbjct: 200 LVVAGTEA-AVLMVESEAEL--LSEDQMLGAVVFGHEQQQVVIQNINELVKE 248
>gi|332090702|gb|EGI95796.1| polyribonucleotide nucleotidyltransferase [Shigella boydii 3594-74]
Length = 696
Score = 145 bits (365), Expect = 5e-33, Method: Composition-based stats.
Identities = 45/242 (18%), Positives = 93/242 (38%), Gaps = 18/242 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR+++ +R + + V GS L G+T L TATL + +V + +
Sbjct: 300 RIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVLDELMGERTD 359
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + R+ G + R++ +V+ + + +
Sbjct: 360 TFLFHYNFPPYSVGETGMVGSPKRREIGHGRL----AKRSVLAVMPDMDKFPYTVRVVSE 415
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ GA +AL D ++ + V +G + +
Sbjct: 416 ITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLSD---------I 466
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D + G I +Q + +++ LN AK ++ + +
Sbjct: 467 LGDEDHLGDMDFKVAGSREG-ISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQA 525
Query: 238 IS 239
I+
Sbjct: 526 IN 527
Score = 95.3 bits (235), Expect = 6e-18, Method: Composition-based stats.
Identities = 37/232 (15%), Positives = 76/232 (32%), Gaps = 27/232 (11%)
Query: 14 ISLTRRV-SKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----HGWITAEYGMLPR 68
++L + ++ A + +V DT + T ++K + T G +P
Sbjct: 1 MTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVNYQERTYAAGRIPG 60
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
S R GR I R+I R +R + + Q+I +
Sbjct: 61 SFFRR------EGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVNPDIV 114
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+ GA A G + A G + +++ E +D
Sbjct: 115 AMIGASAA-------------LSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLD 161
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
T++ ++ V+ AE S+D + ++ +I+ +++
Sbjct: 162 LVVAGTEA-AVLMVESEAEL--LSEDQMLGAVVFGHEQQQVVIQNINELVKE 210
>gi|227503420|ref|ZP_03933469.1| polynucleotide phosphorylase/polyadenylase [Corynebacterium
accolens ATCC 49725]
gi|227075923|gb|EEI13886.1| polynucleotide phosphorylase/polyadenylase [Corynebacterium
accolens ATCC 49725]
Length = 748
Score = 145 bits (365), Expect = 5e-33, Method: Composition-based stats.
Identities = 46/242 (19%), Positives = 89/242 (36%), Gaps = 14/242 (5%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKH 56
R+ GR +R++S+ + A GS L + G+T +L TL+ E+ + +
Sbjct: 364 FRIDGRGLTDIRDLSVEVDLVPRAHGSSLFERGETQILGVTTLDMLKMEQQIDSLTPIES 423
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P STG + + R+ G RAL V+ I
Sbjct: 424 KRYMHHYNFPPFSTGETGRVGSPKRREIGHGAL----AERALLPVIPSREDFPYAIRQVS 479
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+ + ++G T ++ + ++L++ ++ + V + G + D
Sbjct: 480 EALGSNGSTSMGSVCASTLSLYNAGVPLKAPVAGIAMGLV-----SGEVKGKEKFVALTD 534
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED+ D+D T I +Q + L A+D A +++ +
Sbjct: 535 ILGAEDAFGDMDFKVAGTSEF-ITALQLDTKLDGIPSKVLAQALEQARDARATILETMAE 593
Query: 237 VI 238
VI
Sbjct: 594 VI 595
Score = 73.0 bits (177), Expect = 3e-11, Method: Composition-based stats.
Identities = 39/241 (16%), Positives = 65/241 (26%), Gaps = 24/241 (9%)
Query: 12 REISLTRR-VSKYAEGSCLVKF-GDTHLLTTATLEEKV----PMWIRNTKHGWITAEYGM 65
R + +++ A+GS DT LL T T + + G
Sbjct: 32 RTVRFETGQLARQADGSVTTYLDDDTMLLATTTASNQPRENFDFFPLTVDVEERMYAAGK 91
Query: 66 LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125
+P S R GR + R+I R LR Q++I +
Sbjct: 92 IPGSFFRR------EGRPSTEAILACRLIDRPLRPTFVKGLRNEVQVVITVLSQDPEEYY 145
Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185
AI GA A + +++ + + + +
Sbjct: 146 DVVAINGASAATQLSGLPVSGAVGGVRMALIAD-DKHPEGQWVAFPNHEQHERALFEMVV 204
Query: 186 DVDANFVMTDSG-HIVEVQGS---------AERATFSQD-HFFAMLNLAKDRIADLIKLQ 234
I+ V+ A+ A Q+ L AK I L + Q
Sbjct: 205 AGRIVTKGRKEDVAIMMVEAGAGTNVAERIADGAPAPQEAAVAEGLEAAKPFIKTLCEAQ 264
Query: 235 K 235
Sbjct: 265 N 265
>gi|206579040|ref|YP_002236426.1| polyribonucleotide nucleotidyltransferase [Klebsiella pneumoniae
342]
gi|288933408|ref|YP_003437467.1| polyribonucleotide nucleotidyltransferase [Klebsiella variicola
At-22]
gi|290511541|ref|ZP_06550910.1| polyribonucleotide nucleotidyltransferase [Klebsiella sp. 1_1_55]
gi|226702656|sp|B5XSX9|PNP_KLEP3 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|206568098|gb|ACI09874.1| polyribonucleotide nucleotidyltransferase [Klebsiella pneumoniae
342]
gi|288888137|gb|ADC56455.1| polyribonucleotide nucleotidyltransferase [Klebsiella variicola
At-22]
gi|289776534|gb|EFD84533.1| polyribonucleotide nucleotidyltransferase [Klebsiella sp. 1_1_55]
Length = 711
Score = 145 bits (365), Expect = 5e-33, Method: Composition-based stats.
Identities = 44/242 (18%), Positives = 91/242 (37%), Gaps = 18/242 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR+++ +R + + V GS L G+T L TATL + + + +
Sbjct: 315 RIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQNIDELMGERTD 374
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + R+ G + R + +V+ + + +
Sbjct: 375 SFLFHYNFPPYSVGETGMVGSPKRREIGHGRL----AKRGVLAVMPTIDEFPYTVRVVSE 430
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ GA +AL D ++ + V +G + +
Sbjct: 431 ITESNGSSSMASVCGASLALMDAGVPVKAAVAGIAMGLVKEGDNFVVLSD---------I 481
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D + G I +Q + +++ LN AK ++ + +
Sbjct: 482 LGDEDHLGDMDFKVAGSRDG-ISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQA 540
Query: 238 IS 239
I+
Sbjct: 541 IN 542
Score = 94.5 bits (233), Expect = 1e-17, Method: Composition-based stats.
Identities = 38/233 (16%), Positives = 76/233 (32%), Gaps = 31/233 (13%)
Query: 14 ISLTRRV-SKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----HGWITAEYGMLPR 68
++L + ++ A + +V DT + T ++K + T G +P
Sbjct: 16 VTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVNYQERTYAAGKIPG 75
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
R GR I R+I R +R + + Q+I +
Sbjct: 76 GFFRR------EGRPSEGETLIARLIDRPVRPLFPEGFVNEVQVIATVVSVNPQVNPDIV 129
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+ GA A G + A G + +++ E + +D
Sbjct: 130 AMIGASAA-------------LSLSGIPFNGPIGAARVGYINDQYVLNPTQEELKSSKLD 176
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR----IADLIKLQKDV 237
T++ ++ V+ AE S+D + ++ I ++ L K+
Sbjct: 177 LVVAGTEA-AVLMVESEAEL--LSEDQMLGAVVFGHEQQQIVIQNINDLVKEA 226
>gi|332291156|ref|YP_004429765.1| polyribonucleotide nucleotidyltransferase [Krokinobacter diaphorus
4H-3-7-5]
gi|332169242|gb|AEE18497.1| polyribonucleotide nucleotidyltransferase [Krokinobacter diaphorus
4H-3-7-5]
Length = 741
Score = 145 bits (365), Expect = 6e-33, Method: Composition-based stats.
Identities = 43/243 (17%), Positives = 78/243 (32%), Gaps = 18/243 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
+RL GR+ ++R I GS + G+T L T TL + +
Sbjct: 317 LRLDGRKTTEIRPIWSEVDYLPSVHGSAIFTRGETQALATVTLGTSRDANKIDMPSHEGE 376
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P TG S R+ G QR + + A + +
Sbjct: 377 ENFYLHYNFPPFCTGEARPIRGTSRREVGHGNLAQRGLKGMIP------ADCPYTVRVVS 430
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V++++G + A + +A+ D M + + + + D
Sbjct: 431 EVLESNGSSSMATVCAGTMAMMDAGIQMTKPVSGIAMGLISD-------GASGKYAVLSD 483
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T G I Q + S + L A+ ++ +
Sbjct: 484 ILGDEDHLGDMDFKVTGTADG-ITACQMDIKVKGLSYEILVNALQQARAGRLHILDKITE 542
Query: 237 VIS 239
I+
Sbjct: 543 TIA 545
Score = 99.1 bits (245), Expect = 5e-19, Method: Composition-based stats.
Identities = 37/232 (15%), Positives = 68/232 (29%), Gaps = 26/232 (11%)
Query: 7 QENQMREISLTRR-VSKYAEGSCLVKFGDTHLLTTATL---EEKVPMWIRNTKHGWITAE 62
REIS+ ++K A GS +V+ G LL T + + + A
Sbjct: 11 DLGDGREISIETGKLAKQAHGSVVVQSGKCMLLCTVVSNYEAKDLDFLPLTVDYREKFAA 70
Query: 63 YGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQAD 122
G P R R R++ R LR + Q++I D
Sbjct: 71 AGRYPGGFFKR------EARPSDGEVLTMRLVDRVLRPLFPKDYHSETQVMIQLMSHDDD 124
Query: 123 GGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGED 182
+ + + + ++ G + G I++ +
Sbjct: 125 VMPDA-------------MAGLAASAAIQLSDFPFECAISEARVGRVNGEFIINPTRAQL 171
Query: 183 STIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
D+D + ++ V+ E S++ + A D I Q
Sbjct: 172 EESDIDMMI-GASADSVMMVE--GEMDEISEEEMADAIKFAHDHIKVQCAAQ 220
>gi|324996021|gb|EGC27932.1| polyribonucleotide nucleotidyltransferase [Streptococcus sanguinis
SK678]
gi|327460682|gb|EGF07017.1| polyribonucleotide nucleotidyltransferase [Streptococcus sanguinis
SK1]
gi|327472404|gb|EGF17835.1| polyribonucleotide nucleotidyltransferase [Streptococcus sanguinis
SK408]
gi|327488757|gb|EGF20556.1| polyribonucleotide nucleotidyltransferase [Streptococcus sanguinis
SK1058]
Length = 733
Score = 145 bits (365), Expect = 6e-33, Method: Composition-based stats.
Identities = 43/242 (17%), Positives = 80/242 (33%), Gaps = 18/242 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56
+R GR+ +++R + GS L G T L+ T E ++ +
Sbjct: 317 IRPDGRKVDEIRPLDAEVDYLPRVHGSGLFTRGQTQALSVLTLAPMGETQIVDGLDPEYK 376
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y S G + A R+ G RAL V+ I +
Sbjct: 377 KRFMHHYNFPQYSVGETGRYGAPGRREIGHGALG----ERALEQVLPSLEEFPYAIRLVA 432
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V++++G + A+I +AL ++ + + + D
Sbjct: 433 EVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISD---------GSNYTVLTD 483
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T G I +Q + + + L AK +++ L +
Sbjct: 484 IQGLEDHFGDMDFKVAGTREG-ITALQMDIKIEGITAEILTEALAQAKKARFEILDLIEA 542
Query: 237 VI 238
I
Sbjct: 543 TI 544
Score = 115 bits (288), Expect = 5e-24, Method: Composition-based stats.
Identities = 45/232 (19%), Positives = 87/232 (37%), Gaps = 26/232 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKV---PMWIRNTKHGWITAEYGMLP 67
RE+ + V+K A GS +V++G++ +LT AT+ +K+ + + G P
Sbjct: 13 RELVVETGQVAKQANGSAVVRYGESTVLTAATMSKKMATGDFFPLQVNYEEKMYAAGKYP 72
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R GR + R+I R +R + Q+I D +
Sbjct: 73 GGFNKR------EGRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDEDASPQM 126
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
AA+ G+ +A G +A + G + G I++ + +
Sbjct: 127 AAMFGSSLA-------------LSISDIPFNGPIAGVQVGYVDGEFIINPSKEQKEVSLL 173
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
+ T I V+ A+ S+D L + + +LI Q+++++
Sbjct: 174 ELTVAGTKE-AINMVESGAKE--LSEDVMLEALLKGHEAVKELIAFQEEIVA 222
>gi|313206118|ref|YP_004045295.1| polyribonucleotide nucleotidyltransferase [Riemerella anatipestifer
DSM 15868]
gi|312445434|gb|ADQ81789.1| polyribonucleotide nucleotidyltransferase [Riemerella anatipestifer
DSM 15868]
gi|315022925|gb|EFT35948.1| Polyribonucleotide nucleotidyltransferase [Riemerella anatipestifer
RA-YM]
gi|325336437|gb|ADZ12711.1| Polyribonucleotide nucleotidyltransferase (polynucleotide
phosphorylase) [Riemerella anatipestifer RA-GD]
Length = 711
Score = 145 bits (365), Expect = 6e-33, Method: Composition-based stats.
Identities = 52/244 (21%), Positives = 83/244 (34%), Gaps = 18/244 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
+RL GR Q+R I A GS + G+T LTT TL + +
Sbjct: 321 IRLDGRNNQQIRPIWSEVDYLPAAHGSSVFTRGETQSLTTVTLGSLMDANRIDSVITQHD 380
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P STG S R+ G RAL+ ++ I I
Sbjct: 381 ERFYLHYNFPPFSTGEARPLRGTSRREVGHGNL----AQRALKVMIPEET--PYTIRIVS 434
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
D+++++G + A + +AL D M + + + + D
Sbjct: 435 DILESNGSSSMATVCAGTLALMDAGIPMRKPVSGIAMGLITDKESG-------KWTVLSD 487
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T++G I Q + + D L AK+ ++
Sbjct: 488 ILGDEDHLGDMDFKVTGTENG-ITACQMDIKIQGLTMDIMEQALMQAKNGRLHILGEMLK 546
Query: 237 VISN 240
IS
Sbjct: 547 TISE 550
Score = 102 bits (253), Expect = 5e-20, Method: Composition-based stats.
Identities = 34/240 (14%), Positives = 72/240 (30%), Gaps = 27/240 (11%)
Query: 8 ENQMREISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEK----VPMWIRNTKHGWITAE 62
REI++ ++K A+G+ +VK G T LL T ++ V +
Sbjct: 13 LKDGREITIETGKLAKQADGAVVVKMGGTMLLATVVAAKEANPGVDFLPLTVDYREKFGA 72
Query: 63 YGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQAD 122
G +P + R + R++ R +R + Q++I
Sbjct: 73 AGRIPGNFFRR------EAKPSDDEVLTMRLVDRVIRPLFPSDFHAEVQVMISLISYDEK 126
Query: 123 GGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGED 182
+ L + + G + + G ++ +
Sbjct: 127 VMPDS-------------LAGLAASAAIAITDIPFNGPFSEVRVIKKDGVLSINPSWETL 173
Query: 183 STIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNEV 242
+ V IV V+ E ++ + A I ++ Q + ++ +V
Sbjct: 174 QSGVELDIMVGATKDSIVMVE--GEMDEITEQEMLEAITFAHQEIKTQVEAQ-ERLAQKV 230
>gi|27904826|ref|NP_777952.1| polynucleotide phosphorylase/polyadenylase [Buchnera aphidicola
str. Bp (Baizongia pistaciae)]
gi|38605103|sp|Q89AF8|PNP_BUCBP RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|27904224|gb|AAO27057.1| polyribonucleotide nucleotidyltransferase [Buchnera aphidicola str.
Bp (Baizongia pistaciae)]
Length = 693
Score = 145 bits (365), Expect = 6e-33, Method: Composition-based stats.
Identities = 43/243 (17%), Positives = 90/243 (37%), Gaps = 18/243 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVP----MWIRNTKH 56
+R+ GR ++++R + + V GS L G+T L + TL + K
Sbjct: 314 IRIDGRNKDEIRTLDVRTGVLPRVHGSALFTRGETQSLVSVTLGTSRDAQNLDELLGDKT 373
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P + G + R+ G + R++ +V+ L I I
Sbjct: 374 DNFLFHYNFPPYAVGEIGMVGSPKRREIGHGKL----AKRSILAVMPKLDLFPYTIRIVS 429
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
++ +++G + A++ GA +AL D + + + + +G +
Sbjct: 430 EITESNGSSSMASVCGASLALMDAGVPISNAIAGIAMGLIKEGDDFVVLTD--------- 480
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D + G I +Q + + + L AK+ ++ + K
Sbjct: 481 ILGDEDHLGDMDFKISGSKKG-ITALQMDIKVKGITNEIMKLALYQAKNARIHILNIMKK 539
Query: 237 VIS 239
++
Sbjct: 540 SLN 542
Score = 83.7 bits (205), Expect = 2e-14, Method: Composition-based stats.
Identities = 41/232 (17%), Positives = 74/232 (31%), Gaps = 34/232 (14%)
Query: 14 ISLTRRV-SKYAEGSCLVKFGDTHLLTTATLEE----KVPMWIRNTKHGWITAEYGMLPR 68
++L + ++ A + L DT + T ++ + + + T G +P
Sbjct: 16 VTLETGIMARQATAAVLTSMDDTTVFVTVVGQKKLQTEQKFFPMTVNYQERTYAAGRIPG 75
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
R GR I R+I R +R + QII +
Sbjct: 76 GFFRR------EGRPSENEILIARLIDRPIRPLFPKRFFNEVQIIATVVSLNPQVNPDIV 129
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
AI GA A G + A G + I++ + E + +D
Sbjct: 130 AIIGASAA-------------LSISGMPFLGPIGAARIGYINNQYILNPNVNEIKSSSLD 176
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
T+ ++ V+ AE +++ +N + QK VI N
Sbjct: 177 LIISGTEE-SVLMVE--AEANMLTEEQIINAINYGHE-------QQKIVIKN 218
>gi|82778478|ref|YP_404827.1| polynucleotide phosphorylase/polyadenylase [Shigella dysenteriae
Sd197]
gi|81242626|gb|ABB63336.1| polynucleotide phosphorylase [Shigella dysenteriae Sd197]
Length = 734
Score = 145 bits (365), Expect = 6e-33, Method: Composition-based stats.
Identities = 45/242 (18%), Positives = 92/242 (38%), Gaps = 18/242 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR+++ +R + + V GS L G+T L TATL + +V + +
Sbjct: 338 RIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVLDELMGERTD 397
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + R+ G + R + +V+ + + +
Sbjct: 398 TFLFHYNFPPYSVGETGIVGSPKRREIGHGRL----AKRGVLAVMPDMDKFPYTVRVVSE 453
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ GA +AL D ++ + V +G + +
Sbjct: 454 ITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLSD---------I 504
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D + G I +Q + +++ LN AK ++ + +
Sbjct: 505 LGDEDHLGDMDFKVAGSRDG-ISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQA 563
Query: 238 IS 239
I+
Sbjct: 564 IN 565
Score = 96.1 bits (237), Expect = 4e-18, Method: Composition-based stats.
Identities = 37/232 (15%), Positives = 76/232 (32%), Gaps = 27/232 (11%)
Query: 14 ISLTRRV-SKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----HGWITAEYGMLPR 68
++L + ++ A + +V DT + T ++K + T G +P
Sbjct: 39 VTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVNYQERTYAAGRIPG 98
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
S R GR I R+I R +R + + Q+I +
Sbjct: 99 SFFRR------EGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVNPDIV 152
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+ GA A G + A G + +++ E +D
Sbjct: 153 AMIGASAA-------------LSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLD 199
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
T++ ++ V+ AE S+D + ++ +I+ +++
Sbjct: 200 LVVAGTEA-AVLMVESEAEL--LSEDQMLGAVVFGHEQQQVVIQNINELVKE 248
>gi|307245438|ref|ZP_07527526.1| Polyribonucleotide nucleotidyltransferase [Actinobacillus
pleuropneumoniae serovar 1 str. 4074]
gi|307254392|ref|ZP_07536230.1| Polyribonucleotide nucleotidyltransferase [Actinobacillus
pleuropneumoniae serovar 9 str. CVJ13261]
gi|307258851|ref|ZP_07540583.1| Polyribonucleotide nucleotidyltransferase [Actinobacillus
pleuropneumoniae serovar 11 str. 56153]
gi|306853779|gb|EFM85996.1| Polyribonucleotide nucleotidyltransferase [Actinobacillus
pleuropneumoniae serovar 1 str. 4074]
gi|306862691|gb|EFM94647.1| Polyribonucleotide nucleotidyltransferase [Actinobacillus
pleuropneumoniae serovar 9 str. CVJ13261]
gi|306867202|gb|EFM99058.1| Polyribonucleotide nucleotidyltransferase [Actinobacillus
pleuropneumoniae serovar 11 str. 56153]
Length = 715
Score = 145 bits (365), Expect = 6e-33, Method: Composition-based stats.
Identities = 42/241 (17%), Positives = 88/241 (36%), Gaps = 18/241 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR + +R + + V GS + G+T L ATL + ++ + K
Sbjct: 314 RIDGRTVDTVRALDICTGVLPRTHGSAIFTRGETQALAVATLGTERDAQIVDELTGEKSD 373
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + + R+ G + R + +V+ + + + +
Sbjct: 374 RFLFHYNFPPYSVGETGRIGSPKRREIGHGRL----AKRGVLAVMPTAEEFPYVVRVVSE 429
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ GA +AL D ++ + V + + +
Sbjct: 430 ITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEEEKFVVLSD---------I 480
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T G + +Q + + + LN AK ++ + +
Sbjct: 481 LGDEDHLGDMDFKVAGTREG-VTALQMDIKIEGITPEIMQIALNQAKGARMHILSVMEQA 539
Query: 238 I 238
I
Sbjct: 540 I 540
Score = 91.8 bits (226), Expect = 7e-17, Method: Composition-based stats.
Identities = 34/232 (14%), Positives = 72/232 (31%), Gaps = 27/232 (11%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT----KHGWITAEYGMLPR 68
++L +++ A + + DT + T +++V + T G +P
Sbjct: 15 VTLETGAIARQATAAVMASMDDTTVFVTVVAKKEVKEGQDFFPLTVDYQERTYAAGRIPG 74
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
R GR I R+I R +R + Q+I +
Sbjct: 75 GFFKR------EGRPSEGETLIARLIDRPVRPLFPEGFFNEIQVIATVVSVNPQISPDLV 128
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+ GA A G + A G + +++ E +D
Sbjct: 129 AMIGASAA-------------LSLSGVPFNGPIGAARVGFINDQFVLNPTTSEQKISRLD 175
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
T ++ V+ A+ S++ + + + +I+ K+ +
Sbjct: 176 LVVAGT-DKAVLMVESEADI--LSEEQMLSAVVFGHQQQQVVIENIKEFVKE 224
>gi|119477397|ref|ZP_01617588.1| polyribonucleotide nucleotidyltransferase [marine gamma
proteobacterium HTCC2143]
gi|119449323|gb|EAW30562.1| polyribonucleotide nucleotidyltransferase [marine gamma
proteobacterium HTCC2143]
Length = 677
Score = 145 bits (365), Expect = 6e-33, Method: Composition-based stats.
Identities = 42/243 (17%), Positives = 85/243 (34%), Gaps = 18/243 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR N +R I V A GS L G+T + TL + ++ + +
Sbjct: 286 RIDGRDNNTVRPIQAEVGVLAKAHGSALFTRGETQAIGVTTLGTTRDAQLIDALEGKRED 345
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + S R+ G + R + +V+ I + +
Sbjct: 346 NFMLHYNFPPYSVGECGRIGFTSRREVGHGRL----ARRGVAAVLPNPEDFPYTIRVVAE 401
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A+ A +++ + ++ + + +G A+ +
Sbjct: 402 ITESNGSSSMASACVASMSMMEAGVPLKAPVAGIAMGLIKEGERFAVLTD---------I 452
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T +G + +Q + ++ L A ++ V
Sbjct: 453 LGDEDHLGDMDFKVAGTANG-VTALQMDIKIEGINEQIMSIALEQALTARLHILGQMNAV 511
Query: 238 ISN 240
IS
Sbjct: 512 ISE 514
Score = 92.2 bits (227), Expect = 5e-17, Method: Composition-based stats.
Identities = 36/218 (16%), Positives = 68/218 (31%), Gaps = 28/218 (12%)
Query: 29 LVKFGDTHLLTTATLE----EKVPMWIRNTKHGWITAEYGMLPRSTGNRVKREAVSGRQG 84
+V GD +L T E + + + + G +P R R
Sbjct: 1 MVTVGDVQVLCTVVGAKSAKEGMDFFPLGVHYQEKSYAVGKIPGGFFKR------EARPS 54
Query: 85 GRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHM 144
+ R+I R +R + Q++ D AA+ G A
Sbjct: 55 EKETLTSRLIDRPMRPLFPKGFKNEVQVVCTVMSADHDTDPDIAALIGTSAA-------- 106
Query: 145 EDCSNKFQLSQVLKGHVAAISCGMLCGY-PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQ 203
G V A G I++ Y + + +D T ++ V+
Sbjct: 107 -----LSISGLPFGGPVGAARVGFTADNGYILNPSYSQLAGSALDMVVAGTSD-AVLMVE 160
Query: 204 GSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
A+ S+D + A + +IK+ + +++E
Sbjct: 161 SEAQE--LSEDQMLGAVLFAHQEMQTVIKVIGE-LASE 195
>gi|187732493|ref|YP_001881919.1| polynucleotide phosphorylase/polyadenylase [Shigella boydii CDC
3083-94]
gi|226702689|sp|B2U211|PNP_SHIB3 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|187429485|gb|ACD08759.1| polyribonucleotide nucleotidyltransferase [Shigella boydii CDC
3083-94]
Length = 711
Score = 145 bits (365), Expect = 6e-33, Method: Composition-based stats.
Identities = 45/242 (18%), Positives = 92/242 (38%), Gaps = 18/242 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR+++ +R + + V GS L G+T L TATL + +V + +
Sbjct: 315 RIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVLDELMGERTD 374
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + R+ G + R + +V+ + + +
Sbjct: 375 TFLFHYNFPPYSVGETGMVGSPKRREIGHGRL----AKRGVLAVMPDMDKFPYTVRVVSE 430
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ GA +AL D ++ + V +G + +
Sbjct: 431 ITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLSD---------I 481
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D + G I +Q + +++ LN AK ++ + +
Sbjct: 482 LGDEDHLGDMDFKVAGSREG-ISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQA 540
Query: 238 IS 239
I+
Sbjct: 541 IN 542
Score = 96.1 bits (237), Expect = 4e-18, Method: Composition-based stats.
Identities = 37/232 (15%), Positives = 76/232 (32%), Gaps = 27/232 (11%)
Query: 14 ISLTRRV-SKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----HGWITAEYGMLPR 68
++L + ++ A + +V DT + T ++K + T G +P
Sbjct: 16 VTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVNYQERTYAAGRIPG 75
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
S R GR I R+I R +R + + Q+I +
Sbjct: 76 SFFRR------EGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVNPDIV 129
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+ GA A G + A G + +++ E +D
Sbjct: 130 AMIGASAA-------------LSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLD 176
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
T++ ++ V+ AE S+D + ++ +I+ +++
Sbjct: 177 LVVAGTEA-AVLMVESEAEL--LSEDQMLGAVVFGHEQQQVVIQNINELVKE 225
>gi|325299313|ref|YP_004259230.1| Polyribonucleotide nucleotidyltransferase [Bacteroides salanitronis
DSM 18170]
gi|324318866|gb|ADY36757.1| Polyribonucleotide nucleotidyltransferase [Bacteroides salanitronis
DSM 18170]
Length = 729
Score = 145 bits (365), Expect = 6e-33, Method: Composition-based stats.
Identities = 51/243 (20%), Positives = 90/243 (37%), Gaps = 18/243 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
RL GR+ N++R I Y GS + G+T L+T TL +EKV + +
Sbjct: 319 RLDGRKTNEIRPIWCEVSPLPYPHGSAIFTRGETQSLSTVTLGTKADEKVVDDVLDQHKE 378
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P STG + V R+ G RAL+ + +++ D
Sbjct: 379 RFLLHYNFPPFSTGEAKAQRGVGRREIGHGHL----AWRALKGQIPAGYPYCVRVMSDIL 434
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+++G + A + +AL D +++ + + + G + D+
Sbjct: 435 --ESNGSSSMATVCAGTLALMDAGVPIKNPVSGIAMGLIKN-------AGEDKYAVLSDI 485
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T +G I Q + + D L AK+ ++ +
Sbjct: 486 LGDEDHLGDMDFKVTGTKNG-ITATQMDIKCDGLTYDILEKALLQAKEGREYILGKLTEC 544
Query: 238 ISN 240
I+
Sbjct: 545 IAE 547
Score = 101 bits (251), Expect = 8e-20, Method: Composition-based stats.
Identities = 39/241 (16%), Positives = 73/241 (30%), Gaps = 26/241 (10%)
Query: 3 LSGRQENQMREISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
GR I+L ++K A+G+ ++ G+T LL T +
Sbjct: 12 PDGRT------ITLETGKLAKQADGAVTLRMGNTVLLATVCAAKDAVPGTDFMPLQVEYK 65
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
E G+ R++ RALR + +
Sbjct: 66 EKYSAFGRFP--GGFTKREGKASDYEILTCRLVDRALRPLFPDNFHAEVY---------- 113
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
+ V + D L + + G ++ + + G ++D + +
Sbjct: 114 ---VNIILFSADGVDMPDALAGLAASAALAVSDIPFGGPISEVRVARIDGKFVIDPTFEQ 170
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
D+D T +I+ V+ E S+ L A + I K Q + + E
Sbjct: 171 LEQADMDLMVAATYE-NIMMVE--GEMDEVSEQDLLEALKAAHEAIKVHCKAQME-LMEE 226
Query: 242 V 242
V
Sbjct: 227 V 227
>gi|283836290|ref|ZP_06356031.1| polyribonucleotide nucleotidyltransferase [Citrobacter youngae ATCC
29220]
gi|291067653|gb|EFE05762.1| polyribonucleotide nucleotidyltransferase [Citrobacter youngae ATCC
29220]
Length = 710
Score = 145 bits (365), Expect = 6e-33, Method: Composition-based stats.
Identities = 43/242 (17%), Positives = 90/242 (37%), Gaps = 18/242 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR+++ +R + + V GS L G+T L TATL + + + +
Sbjct: 315 RIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTTRDAQSLDELMGERTD 374
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P G + R+ G + R + +V+ + + +
Sbjct: 375 NFLFHYNFPPYCVGETGMVGSPKRREIGHGRL----AKRGVLAVMPDLDKFPYTVRVVSE 430
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ GA +AL D ++ + V +G + +
Sbjct: 431 ITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNFVVLSD---------I 481
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D + G I +Q + +++ LN AK ++ + +
Sbjct: 482 LGDEDHLGDMDFKVAGSRDG-ISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQA 540
Query: 238 IS 239
I+
Sbjct: 541 IN 542
Score = 94.9 bits (234), Expect = 9e-18, Method: Composition-based stats.
Identities = 37/232 (15%), Positives = 75/232 (32%), Gaps = 27/232 (11%)
Query: 14 ISLTRRV-SKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----HGWITAEYGMLPR 68
++L + ++ A + +V DT + T ++K + T G +P
Sbjct: 16 VTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVNYQERTYAAGRIPG 75
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
S R GR I R+I R +R + + Q+I +
Sbjct: 76 SFFRR------EGRPSEGETLIARLIDRPVRPLFPEGFVNEVQVIATVVSVNPQVNPDIV 129
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+ GA A G + A G + +++ E +D
Sbjct: 130 AMIGASAA-------------LTLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLD 176
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
T++ ++ V+ AE S+D + ++ +I+ ++
Sbjct: 177 LVVAGTEA-AVLMVESEAEL--LSEDQMLGAVVFGHEQQQVVIQAINELAKE 225
>gi|730350|sp|P41121|PNP_PHOLU RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=CAP87K; AltName: Full=Polynucleotide phosphorylase;
Short=PNPase
gi|561531|emb|CAA53671.1| polynucleotide phosphorylase [Photorhabdus luminescens]
Length = 709
Score = 145 bits (365), Expect = 6e-33, Method: Composition-based stats.
Identities = 44/241 (18%), Positives = 92/241 (38%), Gaps = 18/241 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR+++ +R + + V GS L G+T L TATL + ++ + +
Sbjct: 315 RIDGREKDMVRALDVRTGVLPRTHGSALFTRGETQALVTATLGTERDAQIIDELMGERTD 374
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + R+ G + R + +V+ + + + +
Sbjct: 375 RFLLHYNFPPYSVGETGMMGSPKRREIGHGRL----AKRGVLAVMPKANEFPYTVRVVSE 430
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ GA +AL D ++ + V +G + +
Sbjct: 431 ITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNFVVLSD---------I 481
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D + G I +Q + +++ LN AK ++ + +
Sbjct: 482 LGDEDHLGDMDFKVAGSCEG-ISALQMDIKIEGITREIMQVALNQAKGARLHILSVMEQA 540
Query: 238 I 238
I
Sbjct: 541 I 541
Score = 89.1 bits (219), Expect = 5e-16, Method: Composition-based stats.
Identities = 38/233 (16%), Positives = 77/233 (33%), Gaps = 28/233 (12%)
Query: 14 ISLTRRV-SKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----HGWITAEYGMLPR 68
+++ + ++ A + +V DT + T ++KV + T G +P
Sbjct: 16 VTIETGMMARQATAAVMVNMDDTAVFVTVVGQKKVKAGQDFFPLTVNYQERTYAAGRIPG 75
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
S R GR G + R+I R LR + L +I+ +
Sbjct: 76 SFFRR------EGRPGEGETLVARLIDRPLRPLFPEGFLNEVRIVATVVSVNPQINPDIV 129
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+ GA A G + A G + +++ E +D
Sbjct: 130 AMIGASAA-------------LALSGIPFNGPIGAARVGYINDQYVLNPTSDELKNSRLD 176
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
T +G ++ V+ +E +++ + D+ +I ++ E
Sbjct: 177 LVVSGT-AGAVLMVE--SEADLLTEEQMLGAVVFGHDQQQVVIDNIN-ALAAE 225
>gi|257096733|sp|A1R0N0|PNP_BORT9 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
Length = 717
Score = 145 bits (365), Expect = 6e-33, Method: Composition-based stats.
Identities = 45/244 (18%), Positives = 87/244 (35%), Gaps = 19/244 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
+R GR Q+R+I + + GS L G+T L TL +E++ I K
Sbjct: 315 LRTDGRNPTQIRDIVAEVDLLRRTHGSALFTRGETQALAVTTLGTSIDEQIMDDIDGDKR 374
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P S G + R+ G R+L +++ I +
Sbjct: 375 LNFMLHYNFPPFSVGETGRLMTGR-REIGHGHL----AQRSLEAMLPKKDDFPYTIRVVS 429
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
++++++G + A + ++L +++ + V +G I
Sbjct: 430 EILESNGSSSMATVCSGSMSLMAAGVPVKEQVAGIAMGLVSEGDKYVILSD--------- 480
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T +G I Q + + ++ L A+ ++ +
Sbjct: 481 ILGEEDHLGDMDFKVAGTKNG-ITGFQMDIKISNVTKQLMKDALAQARIGRMHILSIMDS 539
Query: 237 VISN 240
VIS
Sbjct: 540 VISR 543
Score = 102 bits (253), Expect = 6e-20, Method: Composition-based stats.
Identities = 43/239 (17%), Positives = 81/239 (33%), Gaps = 32/239 (13%)
Query: 5 GRQENQMREISLTRRV-SKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----HGWI 59
GR+ ++ L + +K A G+ L +G + +L T + + +
Sbjct: 10 GRE-----DLILETGLLAKQANGAVLATYGGSTVLATVCCSDSARENLDFVPLSVEYNEK 64
Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119
G +P R G+ + + R+I R +R + D Q++
Sbjct: 65 YYAAGKIPGGFIKR------EGKPKDKEVLVSRLIDRPMRPLFDKRFGREIQVVPTTLST 118
Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179
+ A+ A+ G +AA+ L IV+ +
Sbjct: 119 DQMNPPDIVGMNAAFAAVF-------------LSDIPFNGPIAAVRIAYLNSEFIVNPSF 165
Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
E +D + G I V+G A S++ A ++ A + I + LQK+ I
Sbjct: 166 DEIQDSILDIVVAGSLDG-ITMVEGGANE--VSEEVLLAAIDQAYEYIKQICNLQKEFI 221
>gi|212696535|ref|ZP_03304663.1| hypothetical protein ANHYDRO_01073 [Anaerococcus hydrogenalis DSM
7454]
gi|212676471|gb|EEB36078.1| hypothetical protein ANHYDRO_01073 [Anaerococcus hydrogenalis DSM
7454]
Length = 702
Score = 145 bits (365), Expect = 6e-33, Method: Composition-based stats.
Identities = 46/243 (18%), Positives = 90/243 (37%), Gaps = 19/243 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWI-RNTK 55
+R GR+ ++R +S + A GS L + G T +L+ T EE+V + R
Sbjct: 311 IRPDGRKMKEIRPLSAEAGLLPRAHGSGLFQRGQTQVLSVLTLGSPGEEQVIDSMNREEI 370
Query: 56 HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115
+Y P G+ R+ G RAL V+ + I +
Sbjct: 371 TKRYIHQYNFPPFCVGDIRPLRGPGRREVGHGHL----AERALIPVLPDTKDFPYTIRVV 426
Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIV 175
+V+ ++G + A+I G+ ++L D ++ + + + +I
Sbjct: 427 SEVLSSNGSSSQASICGSTLSLMDAGVPIKKPVAGIAMGLIKEEDSISILTD-------- 478
Query: 176 DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
+ ED D+D T G I +Q + + +++ L A + ++ +
Sbjct: 479 -IQGLEDHLGDMDFKVAGTKDG-ITALQMDMKISGINKEVLQEALADAHEARLKILDVIT 536
Query: 236 DVI 238
I
Sbjct: 537 SAI 539
Score = 96.1 bits (237), Expect = 3e-18, Method: Composition-based stats.
Identities = 48/233 (20%), Positives = 83/233 (35%), Gaps = 27/233 (11%)
Query: 13 EISLTRR-VSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKHGWITAEYGMLP 67
++S+T V++ G CL++ GDT LL TA E + + + G +P
Sbjct: 14 DLSITIGKVAEQTNGECLIRSGDTILLVTAVASDKPREGIDFFPLICDYQEKLYAVGKIP 73
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R G+ ++ I R + R LR + + Q+I + D
Sbjct: 74 GGFIKR------EGKASDKAILISRQMDRPLRPLFPENFYNDVQVIATPFSVDEDNEPDC 127
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
GA +A G VAA+S G + G IV+ + + +
Sbjct: 128 MTTIGASIA-------------LGISDIPFYGPVAAVSVGYVDGKFIVNPNKDQREKSSL 174
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
D T I V+ A S+D + +A I ++ + +I +
Sbjct: 175 DLTVAGTAD-AINMVEAGANE--LSEDEMLEAMMVAHAEIKEICSFIQTIIDD 224
>gi|85058359|ref|YP_454061.1| polynucleotide phosphorylase/polyadenylase [Sodalis glossinidius
str. 'morsitans']
gi|123725447|sp|Q2NW19|PNP_SODGM RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|84778879|dbj|BAE73656.1| polyribonucleotide nucleotidyltransferase [Sodalis glossinidius
str. 'morsitans']
Length = 705
Score = 145 bits (365), Expect = 6e-33, Method: Composition-based stats.
Identities = 43/243 (17%), Positives = 91/243 (37%), Gaps = 18/243 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVP----MWIRNTKHG 57
R+ GR+++ +R + + V GS L G+T L TATL + + +
Sbjct: 315 RIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTERDAQNIDELTGERTD 374
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P G + R+ G + R + +V+ ++ + + +
Sbjct: 375 RFLLHYNFPPYCVGETGMVGSPKRREIGHGRL----AKRGVLAVMPNASEFPYTVRVVSE 430
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ GA +AL D ++ + V +G + +
Sbjct: 431 ITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNFVVLSD---------I 481
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D + G + +Q + + + LN AK ++ + +
Sbjct: 482 LGDEDHLGDMDFKVAGSREG-VTALQMDIKIEGITHEIMQVALNQAKGARMHILGVMERA 540
Query: 238 ISN 240
IS+
Sbjct: 541 ISS 543
Score = 85.7 bits (210), Expect = 5e-15, Method: Composition-based stats.
Identities = 35/231 (15%), Positives = 71/231 (30%), Gaps = 27/231 (11%)
Query: 15 SLTRRV-SKYAEGSCLVKFGDTHLLTTATLEEKVP----MWIRNTKHGWITAEYGMLPRS 69
+L + ++ A + + DT + T ++ + + T G P
Sbjct: 17 TLETGMMARQATAAVMASMDDTAVFVTVVGAKQAKTGQSFFPLTVNYQERTYAAGRFPGG 76
Query: 70 TGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAA 129
R GR I R+I R +R + L +I + A
Sbjct: 77 FFRR------EGRPSEGETLISRLIDRPIRPLFPEGFLNEVHVIATVVSVNPQVSPDIVA 130
Query: 130 ITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDA 189
+ GA A G + A G + +++ E +T +D
Sbjct: 131 MIGASAA-------------LSLSGIPFSGPIGAARVGYINDQYVLNPTQAELATSRLDL 177
Query: 190 NFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
T + ++ V+ +E S+D + D+ +I +++
Sbjct: 178 VVAGTQN-AVLMVE--SEAQLLSEDQMLGAVVYGHDQQQIVIDNINQLVAE 225
>gi|110807033|ref|YP_690553.1| polynucleotide phosphorylase/polyadenylase [Shigella flexneri 5
str. 8401]
gi|191168040|ref|ZP_03029840.1| polyribonucleotide nucleotidyltransferase [Escherichia coli B7A]
gi|123342480|sp|Q0T0B7|PNP_SHIF8 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|187611324|sp|Q83JG0|PNP_SHIFL RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|110616581|gb|ABF05248.1| Polyribonucleotide nucleotidyltransferase [Shigella flexneri 5 str.
8401]
gi|190901909|gb|EDV61658.1| polyribonucleotide nucleotidyltransferase [Escherichia coli B7A]
gi|313648594|gb|EFS13036.1| polyribonucleotide nucleotidyltransferase [Shigella flexneri 2a
str. 2457T]
gi|320175528|gb|EFW50624.1| Polyribonucleotide nucleotidyltransferase [Shigella dysenteriae CDC
74-1112]
gi|323154378|gb|EFZ40579.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
EPECa14]
gi|323173576|gb|EFZ59205.1| polyribonucleotide nucleotidyltransferase [Escherichia coli LT-68]
gi|323178877|gb|EFZ64453.1| polyribonucleotide nucleotidyltransferase [Escherichia coli 1180]
gi|332752324|gb|EGJ82714.1| polyribonucleotide nucleotidyltransferase [Shigella flexneri
4343-70]
gi|332752851|gb|EGJ83236.1| polyribonucleotide nucleotidyltransferase [Shigella flexneri K-671]
gi|332754470|gb|EGJ84836.1| polyribonucleotide nucleotidyltransferase [Shigella flexneri
2747-71]
gi|332765161|gb|EGJ95388.1| pnp [Shigella flexneri 2930-71]
gi|332998806|gb|EGK18402.1| polyribonucleotide nucleotidyltransferase [Shigella flexneri VA-6]
gi|332999243|gb|EGK18829.1| polyribonucleotide nucleotidyltransferase [Shigella flexneri K-272]
gi|333000227|gb|EGK19810.1| polyribonucleotide nucleotidyltransferase [Shigella flexneri K-218]
gi|333014593|gb|EGK33940.1| polyribonucleotide nucleotidyltransferase [Shigella flexneri K-304]
gi|333014965|gb|EGK34309.1| polyribonucleotide nucleotidyltransferase [Shigella flexneri K-227]
Length = 711
Score = 145 bits (365), Expect = 6e-33, Method: Composition-based stats.
Identities = 45/242 (18%), Positives = 92/242 (38%), Gaps = 18/242 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR+++ +R + + V GS L G+T L TATL + +V + +
Sbjct: 315 RIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVLDELMGERTD 374
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + R+ G + R + +V+ + + +
Sbjct: 375 TFLFHYNFPPYSVGETGMVGSPKRREIGHGRL----AKRGVLAVMPDMDKFPYTVRVVSE 430
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ GA +AL D ++ + V +G + +
Sbjct: 431 ITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLSD---------I 481
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D + G I +Q + +++ LN AK ++ + +
Sbjct: 482 LGDEDHLGDMDFKVAGSREG-ISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQA 540
Query: 238 IS 239
I+
Sbjct: 541 IN 542
Score = 96.1 bits (237), Expect = 4e-18, Method: Composition-based stats.
Identities = 37/232 (15%), Positives = 76/232 (32%), Gaps = 27/232 (11%)
Query: 14 ISLTRRV-SKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----HGWITAEYGMLPR 68
++L + ++ A + +V DT + T ++K + T G +P
Sbjct: 16 VTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVNYQERTYAAGRIPG 75
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
S R GR I R+I R +R + + Q+I +
Sbjct: 76 SFFRR------EGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVNPDIV 129
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+ GA A G + A G + +++ E +D
Sbjct: 130 AMIGASAA-------------LSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLD 176
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
T++ ++ V+ AE S+D + ++ +I+ +++
Sbjct: 177 LVVAGTEA-AVLMVESEAEL--LSEDQMLGAVVFGHEQQQVVIQNINELVKE 225
>gi|226329676|ref|ZP_03805194.1| hypothetical protein PROPEN_03586 [Proteus penneri ATCC 35198]
gi|225202862|gb|EEG85216.1| hypothetical protein PROPEN_03586 [Proteus penneri ATCC 35198]
Length = 454
Score = 145 bits (365), Expect = 6e-33, Method: Composition-based stats.
Identities = 45/243 (18%), Positives = 93/243 (38%), Gaps = 18/243 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR+++ +R + + + GS L G+T L TATL + + I
Sbjct: 60 RIDGREKDMVRALDIRTGLLPRTHGSALFTRGETQALVTATLGTARDAQTIDDIMGEHTD 119
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + R+ G + R + +V+ + + +
Sbjct: 120 TFLLHYNFPPYSVGETGMMGSPKRREIGHGRL----AKRGVLAVMPTIEEFPYTVRVVSE 175
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ GA +AL D +++ + V +G + +
Sbjct: 176 ITESNGSSSMASVCGASLALMDAGVPIKESVAGIAMGLVKEGDNFVVLSD---------I 226
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D + +G + +Q + +++ LN AK ++ + +D
Sbjct: 227 LGDEDHLGDMDFKVAGSRNG-VSALQMDIKIEGITREIMQVALNQAKSARLHILGVMEDA 285
Query: 238 ISN 240
IS
Sbjct: 286 ISK 288
>gi|218782571|ref|YP_002433889.1| polynucleotide phosphorylase/polyadenylase [Desulfatibacillum
alkenivorans AK-01]
gi|257096685|sp|B8FCZ0|PNP_DESAA RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|218763955|gb|ACL06421.1| Polyribonucleotide nucleotidyltransferase [Desulfatibacillum
alkenivorans AK-01]
Length = 712
Score = 145 bits (365), Expect = 6e-33, Method: Composition-based stats.
Identities = 44/243 (18%), Positives = 88/243 (36%), Gaps = 18/243 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHG 57
R+ GR+ +++R I+ + GS L G+T L T +E+ + +
Sbjct: 313 RIGGRRFDEVRPITCEVGILPRTHGSALFTRGETQSLGILTLGSSGDEQRVETLYGDETR 372
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S + S R G RA++ V+ I I +
Sbjct: 373 PFMLHYNFPPYSVREVKRISGPSRRDIGHGGLST----RAIKEVLPSKEDFDYTIRIVSE 428
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+++++G + A + A +AL D + + + + + +G + +
Sbjct: 429 ILESNGSSSMATVCSASLALMDGGVPITNPVSGIAMGLMAEGDKIVVLSD---------I 479
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T G I VQ + ++ +++ L A+ +++
Sbjct: 480 LGDEDHMGDMDFKVAGTKDG-ITSVQMDIKISSLTREIMEKALAQARVGRLHILEKMLTT 538
Query: 238 ISN 240
IS
Sbjct: 539 ISE 541
Score = 105 bits (261), Expect = 6e-21, Method: Composition-based stats.
Identities = 36/233 (15%), Positives = 84/233 (36%), Gaps = 26/233 (11%)
Query: 13 EISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----HGWITAEYGMLP 67
+ + ++K A GS +V +G+T L T +++ I + G +P
Sbjct: 13 PLRIQTGKLAKQASGSVVVSYGETITLVTVVGSQELRPGIDFVPLSVEYQEKVYAAGRIP 72
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
+ R GR + R+I R +R + + Q+I + +
Sbjct: 73 GNYFRR-----EIGRPSEKETLTARLIDRPIRPLFPKTWRYETQVIATVLSMDQENDPDM 127
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
++ GA AL +A + G + G + + + D+
Sbjct: 128 LSMVGASAALC-------------ISDLPFFTPIACVRVGRIDGELVANPTISQQENCDL 174
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
+ + G +V V+G + S++ + ++ + L+++Q++++
Sbjct: 175 NIIVAGSRDG-VVMVEGGGQ--FISEEEMLDAIYFGQESLEPLLEMQEELMEK 224
>gi|327468357|gb|EGF13842.1| polyribonucleotide nucleotidyltransferase [Streptococcus sanguinis
SK330]
Length = 733
Score = 145 bits (365), Expect = 6e-33, Method: Composition-based stats.
Identities = 43/242 (17%), Positives = 80/242 (33%), Gaps = 18/242 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56
+R GR+ +++R + GS L G T L+ T E ++ +
Sbjct: 317 IRPDGRKVDEIRPLDAEVDYLPRVHGSGLFTRGQTQALSVLTLAPMGETQIVDGLDPEYK 376
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y S G + A R+ G RAL V+ I +
Sbjct: 377 KRFMHHYNFPQYSVGETGRYGAPGRREIGHGALG----ERALEQVLPSLEEFPYAIRLVA 432
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V++++G + A+I +AL ++ + + + D
Sbjct: 433 EVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISD---------GSNYTVLTD 483
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T G I +Q + + + L AK +++ L +
Sbjct: 484 IQGLEDHFGDMDFKVAGTREG-ITALQMDIKIEGITAEILTEALAQAKKARFEILDLIEA 542
Query: 237 VI 238
I
Sbjct: 543 TI 544
Score = 115 bits (288), Expect = 5e-24, Method: Composition-based stats.
Identities = 45/232 (19%), Positives = 87/232 (37%), Gaps = 26/232 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKV---PMWIRNTKHGWITAEYGMLP 67
RE+ + V+K A GS +V++G++ +LT AT+ +K+ + + G P
Sbjct: 13 RELVVETGQVAKQANGSAVVRYGESTVLTAATMSKKMATGDFFPLQVNYEEKMYAAGKYP 72
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R GR + R+I R +R + Q+I D +
Sbjct: 73 GGFNKR------EGRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDEDASPQM 126
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
AA+ G+ +A G +A + G + G I++ + +
Sbjct: 127 AAMFGSSLA-------------LSISDIPFNGPIAGVQVGYVDGEFIINPSKEQKEVSLL 173
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
+ T I V+ A+ S+D L + + +LI Q+++++
Sbjct: 174 ELTVAGTKE-AINMVESGAKE--LSEDVMLEALLKGHEAVKELIAFQEEIVA 222
>gi|269216890|ref|ZP_06160744.1| tRNA nucleotidyltransferase [Slackia exigua ATCC 700122]
gi|269129697|gb|EEZ60781.1| tRNA nucleotidyltransferase [Slackia exigua ATCC 700122]
Length = 246
Score = 145 bits (365), Expect = 6e-33, Method: Composition-based stats.
Identities = 108/240 (45%), Positives = 152/240 (63%), Gaps = 5/240 (2%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R+ R + MR+++L R V K A GSCLVKFGDTH+L +AT+E++V W + + GW+TA
Sbjct: 11 RVDNRLDRAMRDVTLERGVMKNASGSCLVKFGDTHVLVSATIEDRVAGWRKGSGLGWLTA 70
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSAL-GSRQIIIDCDVIQ 120
EY MLP + R RE + GRSQEI+R+IGR+LR+V D+ + G + IDCDV+Q
Sbjct: 71 EYAMLPAAGTKRTPRETKGRK--GRSQEIERLIGRSLRNVCDMGRMGGEVTMTIDCDVLQ 128
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+ITGAWVA D + + VAA+S GM+ G ++DLDY
Sbjct: 129 ADGGTRTASITGAWVAAWDAFEMWRMAGRCKTNPLFGQ--VAAVSVGMVGGRLLLDLDYR 186
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
EDS ++D N VM G +VEVQG+ E+ +FS+ ML++A+ I L++ Q+ +
Sbjct: 187 EDSQAEIDMNVVMNGKGELVEVQGTGEQVSFSRATLNEMLDMAQAGIDGLLEKQRAAVGR 246
>gi|146319581|ref|YP_001199293.1| polynucleotide phosphorylase/polyadenylase [Streptococcus suis
05ZYH33]
gi|253752584|ref|YP_003025725.1| polyribonucleotide nucleotidyltransferase [Streptococcus suis SC84]
gi|253754410|ref|YP_003027551.1| polyribonucleotide nucleotidyltransferase [Streptococcus suis P1/7]
gi|253756344|ref|YP_003029484.1| polyribonucleotide nucleotidyltransferase [Streptococcus suis
BM407]
gi|187611303|sp|A4VXQ4|PNP_STRSY RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|187611308|sp|A4W401|PNP_STRS2 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|145690387|gb|ABP90893.1| Polyribonucleotide nucleotidyltransferase (polynucleotide
phosphorylase) [Streptococcus suis 05ZYH33]
gi|251816873|emb|CAZ52520.1| polyribonucleotide nucleotidyltransferase [Streptococcus suis SC84]
gi|251818808|emb|CAZ56648.1| polyribonucleotide nucleotidyltransferase [Streptococcus suis
BM407]
gi|251820656|emb|CAR47416.1| polyribonucleotide nucleotidyltransferase [Streptococcus suis P1/7]
gi|292559196|gb|ADE32197.1| Polyribonucleotide nucleotidyltransferase [Streptococcus suis GZ1]
gi|319758995|gb|ADV70937.1| polynucleotide phosphorylase/polyadenylase [Streptococcus suis
JS14]
Length = 739
Score = 145 bits (365), Expect = 6e-33, Method: Composition-based stats.
Identities = 43/244 (17%), Positives = 82/244 (33%), Gaps = 18/244 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56
+R GR+ +++R + GS L G T L+ T E ++ + +
Sbjct: 317 VRPDGRRVDEIRPLDAEVDFLPNVHGSGLFTRGQTQALSVLTLAPMGETQIIDGLDDEYK 376
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y S G+ + A R+ G RAL V+ I +
Sbjct: 377 KRFLHHYNFPQYSVGSTGRYGAPGRREIGHGALG----ERALEQVLPSLEDFPYAIRLVA 432
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V++++G + A+IT +AL ++ + + + D
Sbjct: 433 EVLESNGSSSQASITAGTLALMAGGVPIKAPVAGIAMGLISD---------GTNYTVLTD 483
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T G I +Q + + L AK +++ + +
Sbjct: 484 IQGLEDHFGDMDFKVAGTRDG-ITALQMDIKIDGITPQILEEALAQAKKARFEILDVIEA 542
Query: 237 VISN 240
I
Sbjct: 543 TIPE 546
Score = 104 bits (259), Expect = 1e-20, Method: Composition-based stats.
Identities = 41/231 (17%), Positives = 81/231 (35%), Gaps = 26/231 (11%)
Query: 13 EISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKV---PMWIRNTKHGWITAEYGMLPR 68
++ + V+K A G+ +V++GD+ +LT A + +K+ + + G P
Sbjct: 14 KLVVETGQVAKQANGAVVVRYGDSTVLTAAVMSKKMATGDFFPLQVNYEEKMYAAGKFPG 73
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
R GR + R+I R +R + Q+I D A
Sbjct: 74 GWMKR------EGRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDPDASAPMA 127
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+ G+ +A G +A + G + G I++ D + ++
Sbjct: 128 AMFGSSLA-------------LAISDIPFNGPIAGVQVGYVNGELIINPDQAQQEASLLE 174
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
I V+ A+ S++ L I +L+ Q +++
Sbjct: 175 LTVAGNKD-AINMVESGAKE--LSEEVMLEALLKGHAAIQELLDFQNQIVA 222
>gi|125718838|ref|YP_001035971.1| polynucleotide phosphorylase/polyadenylase [Streptococcus sanguinis
SK36]
gi|187611302|sp|A3CQG6|PNP_STRSV RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|125498755|gb|ABN45421.1| Polyribonucleotide nucleotidyltransferase, putative [Streptococcus
sanguinis SK36]
Length = 733
Score = 145 bits (365), Expect = 6e-33, Method: Composition-based stats.
Identities = 43/242 (17%), Positives = 80/242 (33%), Gaps = 18/242 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56
+R GR+ +++R + GS L G T L+ T E ++ +
Sbjct: 317 VRPDGRKVDEIRPLDAEVDYLPRVHGSGLFTRGQTQALSVLTLAPMGETQIVDGLDPEYK 376
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y S G + A R+ G RAL V+ I +
Sbjct: 377 KRFMHHYNFPQYSVGETGRYGAPGRREIGHGALG----ERALEQVLPSLEEFPYAIRLVA 432
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V++++G + A+I +AL ++ + + G +
Sbjct: 433 EVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISDGSNYTVLTD--------- 483
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T G I +Q + + + L AK +++ L +
Sbjct: 484 IQGLEDHFGDMDFKVAGTREG-ITALQMDIKIEGITAEILTEALAQAKKARFEILDLIEA 542
Query: 237 VI 238
I
Sbjct: 543 TI 544
Score = 117 bits (293), Expect = 1e-24, Method: Composition-based stats.
Identities = 45/232 (19%), Positives = 87/232 (37%), Gaps = 26/232 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKV---PMWIRNTKHGWITAEYGMLP 67
RE+ + V+K A GS +V++G++ +LT AT+ +K+ + + G P
Sbjct: 13 RELVVETGQVAKQANGSAVVRYGESTVLTAATMSKKMATGDFFPLQVNYEEKMYAAGKYP 72
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R GR + R+I R +R + Q+I D +
Sbjct: 73 GGFNKR------EGRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDEDASPQM 126
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
AA+ G+ +A G +A + G + G I++ + +
Sbjct: 127 AAMFGSSLA-------------LSISDIPFNGPIAGVQVGYVDGKFIINPSKEQKEVSLL 173
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
+ T I V+ A+ S+D L + + +LI Q+++++
Sbjct: 174 ELTVAGTKD-AINMVESGAKE--LSEDIMLEALLKGHEAVKELIAFQEEIVA 222
>gi|325849667|ref|ZP_08170870.1| polyribonucleotide nucleotidyltransferase [Anaerococcus
hydrogenalis ACS-025-V-Sch4]
gi|325480008|gb|EGC83086.1| polyribonucleotide nucleotidyltransferase [Anaerococcus
hydrogenalis ACS-025-V-Sch4]
Length = 702
Score = 145 bits (365), Expect = 6e-33, Method: Composition-based stats.
Identities = 46/243 (18%), Positives = 90/243 (37%), Gaps = 19/243 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWI-RNTK 55
+R GR+ ++R +S + A GS L + G T +L+ T EE+V + R
Sbjct: 311 IRPDGRKMKEIRPLSAEAGLLPRAHGSGLFQRGQTQVLSVLTLGSPGEEQVIDSMNREEI 370
Query: 56 HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115
+Y P G+ R+ G RAL V+ + I +
Sbjct: 371 TKRYIHQYNFPPFCVGDIRPLRGPGRREVGHGHL----AERALIPVLPDTKDFPYTIRVV 426
Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIV 175
+V+ ++G + A+I G+ ++L D ++ + + + +I
Sbjct: 427 SEVLSSNGSSSQASICGSTLSLMDAGVPIKKPVAGIAMGLIKEEDSISILTD-------- 478
Query: 176 DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
+ ED D+D T G I +Q + + +++ L A + ++ +
Sbjct: 479 -IQGLEDHLGDMDFKVAGTKDG-ITALQMDMKISGINKEVLQEALADAHEARLKILDVIT 536
Query: 236 DVI 238
I
Sbjct: 537 SAI 539
Score = 96.1 bits (237), Expect = 4e-18, Method: Composition-based stats.
Identities = 48/233 (20%), Positives = 83/233 (35%), Gaps = 27/233 (11%)
Query: 13 EISLTRR-VSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKHGWITAEYGMLP 67
++S+T V++ G CL++ GDT LL TA E + + + G +P
Sbjct: 14 DLSITIGKVAEQTNGECLIRSGDTILLVTAVASDKPREGIDFFPLICDYQEKLYAVGKIP 73
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R G+ ++ I R + R LR + + Q+I + D
Sbjct: 74 GGFIKR------EGKASDKAILISRQMDRPLRPLFPENFYNDVQVIATPFSVDEDNEPDC 127
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
GA +A G VAA+S G + G IV+ + + +
Sbjct: 128 MTTIGASIA-------------LGISDIPFYGPVAAVSVGYVDGKFIVNPNKDQREKSSL 174
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
D T I V+ A S+D + +A I ++ + +I +
Sbjct: 175 DLTVAGTAD-AINMVEAGANE--LSEDEMLEAMMVAHAEIKEICSFIQTIIDD 224
>gi|187611313|sp|Q12QG9|PNP_SHEDO RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
Length = 698
Score = 144 bits (364), Expect = 6e-33, Method: Composition-based stats.
Identities = 41/240 (17%), Positives = 86/240 (35%), Gaps = 10/240 (4%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R+ GR+ + +R +++ V GS L G+T L T TL + ++ G T
Sbjct: 314 RIDGREPDMIRALNVLAGVLPRTHGSSLFTRGETQALVTCTLGTERDAQKIDSIMGERTN 373
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
+ + V + G R ++ R + +V+ + I + ++ ++
Sbjct: 374 RFMLHYNFPPYSVGETGMVGSPKRREIGHGKLAWRGMNAVMPTAEEFPYSIRVVSEITES 433
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
+G + A++ G +AL D ++ + V +G + + E
Sbjct: 434 NGSSSMASVCGTSLALMDAGVPIKTSVAGIAMGLVKEGDDFVVLSD---------ILGDE 484
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
D D+D T G I +Q + +++ L A ++ + I
Sbjct: 485 DHLGDMDFKVAGTRDG-ITALQMDIKIEGITKEIMDIALQQAYGARVHILNVMDQAIGTH 543
Score = 94.1 bits (232), Expect = 1e-17, Method: Composition-based stats.
Identities = 34/228 (14%), Positives = 74/228 (32%), Gaps = 27/228 (11%)
Query: 14 ISLTRRV-SKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGMLPR 68
++L V ++ A+ + L GDT +L T + + + T G +P
Sbjct: 15 VTLETGVIARQADAAVLASMGDTTVLVTVVGKKVADLSRDFFPLTVNYQEKTYAAGKIPG 74
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
R GR I R+I R +R + Q+II +
Sbjct: 75 GFFKR------EGRPSEDETLIARLIDRPIRPLFPNGFKNEVQVIITVVSVDPQIEPDII 128
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
++ G A G + A G + G +++ + +T ++
Sbjct: 129 SMIGTSAA-------------LAISGIPFSGPLGAARVGYINGEYLLNPTVDQLATSSLN 175
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
T + ++ V+ A+ +++ + D+ ++ +
Sbjct: 176 LVVAGTKA-AVLMVESEAKA--LAEEIMLGAVTYGHDQQQVVVDAIAE 220
>gi|332365788|gb|EGJ43545.1| polyribonucleotide nucleotidyltransferase [Streptococcus sanguinis
SK355]
Length = 733
Score = 144 bits (364), Expect = 6e-33, Method: Composition-based stats.
Identities = 43/242 (17%), Positives = 80/242 (33%), Gaps = 18/242 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56
+R GR+ +++R + GS L G T L+ T E ++ +
Sbjct: 317 VRPDGRKIDEIRPLDAEVDYLPRVHGSGLFTRGQTQALSVLTLAPMGETQIIDGLDPEYK 376
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y S G + A R+ G RAL V+ I +
Sbjct: 377 KRFMHHYNFPQYSVGETGRYGAPGRREIGHGALG----ERALEQVLPSLEEFPYAIRLVA 432
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V++++G + A+I +AL ++ + + + D
Sbjct: 433 EVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISD---------GSNYTVLTD 483
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T G I +Q + + + L AK +++ L +
Sbjct: 484 IQGLEDHFGDMDFKVAGTREG-ITALQMDIKIEGITAEILTEALAQAKKARFEILDLIEA 542
Query: 237 VI 238
I
Sbjct: 543 TI 544
Score = 116 bits (291), Expect = 2e-24, Method: Composition-based stats.
Identities = 45/232 (19%), Positives = 87/232 (37%), Gaps = 26/232 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKV---PMWIRNTKHGWITAEYGMLP 67
RE+ + V+K A GS +V++G++ +LT AT+ +K+ + + G P
Sbjct: 13 RELVVETGQVAKQANGSAVVRYGESTVLTAATMSKKMATGDFFPLQVNYEEKMYAAGKYP 72
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R GR + R+I R +R + Q+I D +
Sbjct: 73 GGFNKR------EGRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDEDASPQM 126
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
AA+ G+ +A G +A + G + G I++ + +
Sbjct: 127 AAMFGSSLA-------------LSISDIPFNGPIAGVQVGYVDGEFIINPSKEQKEVSLL 173
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
+ T I V+ A+ S+D L + + +LI Q+++++
Sbjct: 174 ELTVAGTKD-AINMVESGAKE--LSEDIMLEALLKGHEAVKELIAFQEEIVA 222
>gi|315221320|ref|ZP_07863243.1| polyribonucleotide nucleotidyltransferase [Streptococcus anginosus
F0211]
gi|315189679|gb|EFU23371.1| polyribonucleotide nucleotidyltransferase [Streptococcus anginosus
F0211]
Length = 726
Score = 144 bits (364), Expect = 6e-33, Method: Composition-based stats.
Identities = 43/242 (17%), Positives = 80/242 (33%), Gaps = 18/242 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56
+R GR+ +++R + GS L G T L+ T E ++ +
Sbjct: 317 IRPDGRKVDEIRPLDAEIDYLPRVHGSGLFTRGQTQALSVLTLAPMGETQIVDGLDPEYK 376
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y S G + A R+ G RAL V+ I +
Sbjct: 377 KRFMHHYNFPQYSVGETGRYGAPGRREIGHGALG----ERALAQVLPSLEDFPYAIRLVA 432
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V++++G + A+I +AL ++ + + + D
Sbjct: 433 EVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISD---------GSNYTILTD 483
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T G I +Q + + + L AK +++ L +
Sbjct: 484 IQGLEDHFGDMDFKVAGTREG-ITALQMDIKIEGITAEILQEALAQAKKARFEILDLIER 542
Query: 237 VI 238
I
Sbjct: 543 TI 544
Score = 108 bits (268), Expect = 1e-21, Method: Composition-based stats.
Identities = 42/231 (18%), Positives = 85/231 (36%), Gaps = 26/231 (11%)
Query: 13 EISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKV---PMWIRNTKHGWITAEYGMLPR 68
E+ + V+K A GS +V++G++ +LT A + +K+ + + G P
Sbjct: 14 ELVVETGQVAKQANGSVVVRYGESTVLTAAVMSKKMATGDFFPLQVNYEEKMYAAGKYPG 73
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
R GR + R+I R +R + Q+I AD A
Sbjct: 74 GFNKR------EGRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDADASAPMA 127
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+ G+ +A G +A + G + G +++ + ++
Sbjct: 128 AMFGSSLA-------------LSISDIPFNGPIAGVQVGYVNGELVINPSQEQKEASLLE 174
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
T I V+ A+ S++ L + + +LI Q+++++
Sbjct: 175 LTVAGTKE-AINMVESGAKE--LSEEVMLEALLKGHEAVKELIAFQEEIVA 222
>gi|163752368|ref|ZP_02159563.1| polyribonucleotide nucleotidyltransferase [Shewanella benthica
KT99]
gi|161327740|gb|EDP98927.1| polyribonucleotide nucleotidyltransferase [Shewanella benthica
KT99]
Length = 702
Score = 144 bits (364), Expect = 6e-33, Method: Composition-based stats.
Identities = 41/240 (17%), Positives = 85/240 (35%), Gaps = 10/240 (4%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R+ GR+ + +R +++ V GS + G+T L T TL + ++ G T
Sbjct: 314 RIDGREPDMVRGLNVMAGVLPRTHGSAIFTRGETQALVTCTLGTERDAQKVDSIMGEYTN 373
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
+ + V G R ++ R +++V+ + I + ++ ++
Sbjct: 374 RFMLHYNFPPYCVGETGFVGSPKRREIGHGKLAWRGMKAVMPSAEEFPYSIRVVSEITES 433
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
+G + A + G +AL D ++ + V +G + + E
Sbjct: 434 NGSSSMATVCGTSLALMDAGVPIKTSVAGIAMGLVKEGDDFVVLSD---------ILGDE 484
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
D D+D T G I +Q + +Q+ L A ++ + I
Sbjct: 485 DHLGDMDFKVAGTRDG-ITALQMDIKIEGITQEIMQIALQQAYGARVHILNVMDQAIGTH 543
Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats.
Identities = 40/228 (17%), Positives = 79/228 (34%), Gaps = 27/228 (11%)
Query: 14 ISLTRRV-SKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGMLPR 68
I+L V ++ A+ + L GDT +L T E + + T G +P
Sbjct: 15 ITLETGVIARQADAAVLASMGDTTVLVTVVGKKDEEPGRDFFPLTVNYQERTYAAGKIPG 74
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
R GR I R+I R +R + Q+II + +
Sbjct: 75 GFFKR------EGRPSESETLIARLIDRPIRPLFPNGFKNEVQVIITVVSVDPEINPDVI 128
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
++ G A G + G + G I++ + + + D+D
Sbjct: 129 SMIGTSAA-------------LAISGLPFNGPLGVARVGYINGEYILNPEVSQLAESDLD 175
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
T+ G ++ V+ +E A+ +++ + ++ +I K+
Sbjct: 176 LIVAGTE-GAVLMVE--SEAASLAEEVMLGSVAYGHEQQQVVITAIKE 220
>gi|294142055|ref|YP_003558033.1| polyribonucleotide nucleotidyltransferase [Shewanella violacea
DSS12]
gi|293328524|dbj|BAJ03255.1| polyribonucleotide nucleotidyltransferase [Shewanella violacea
DSS12]
Length = 705
Score = 144 bits (364), Expect = 6e-33, Method: Composition-based stats.
Identities = 40/240 (16%), Positives = 85/240 (35%), Gaps = 10/240 (4%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R+ GR+ + +R +++ V GS + G+T L T TL + ++ G T
Sbjct: 317 RIDGREPDMVRGLNVMAGVLPRTHGSAIFTRGETQALVTCTLGTERDAQKVDSIMGEYTN 376
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
+ + V G R ++ R + +V+ + I + ++ ++
Sbjct: 377 RFMLHYNFPPYCVGETGFVGSPKRREIGHGKLAWRGMNAVMPSAEDFPYSIRVVSEITES 436
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
+G + A++ G +AL D ++ + V +G + + E
Sbjct: 437 NGSSSMASVCGTSLALMDAGVPIKTSVAGIAMGLVKEGDDFVVLSD---------ILGDE 487
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
D D+D T G I +Q + +++ L A ++ + I
Sbjct: 488 DHLGDMDFKVAGTRDG-ITALQMDIKIEGITKEIMQIALQQAYGARVHILNVMDQAIGTH 546
Score = 98.0 bits (242), Expect = 9e-19, Method: Composition-based stats.
Identities = 37/228 (16%), Positives = 76/228 (33%), Gaps = 27/228 (11%)
Query: 14 ISLTRRV-SKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGMLPR 68
++L V ++ A+ + L GDT +L T E + + T G +P
Sbjct: 18 VTLETGVIARQADAAVLASMGDTTVLVTVVGKKYEEPGRDFFPLTVNYQERTYAAGKIPG 77
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
R GR I R+I R +R + Q+II + +
Sbjct: 78 GFFKR------EGRPSESETLIARLIDRPIRPLFPNGFKNEVQVIITVVSVDPEINPDVI 131
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
++ G A G + G + G I++ + + D+D
Sbjct: 132 SMIGTSAA-------------LAISGLPFNGPLGVARVGYINGEYILNPEVSQLVESDLD 178
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
T + ++ V+ +E A+ ++ + +++ +I +
Sbjct: 179 LIVAGTQA-AVLMVE--SEAASLPEEIMLGSVAYGHEQLQVVIDAVTE 223
>gi|91792379|ref|YP_562030.1| polynucleotide phosphorylase/polyadenylase [Shewanella
denitrificans OS217]
gi|91714381|gb|ABE54307.1| Polyribonucleotide nucleotidyltransferase [Shewanella denitrificans
OS217]
Length = 701
Score = 144 bits (364), Expect = 6e-33, Method: Composition-based stats.
Identities = 41/240 (17%), Positives = 86/240 (35%), Gaps = 10/240 (4%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R+ GR+ + +R +++ V GS L G+T L T TL + ++ G T
Sbjct: 317 RIDGREPDMIRALNVLAGVLPRTHGSSLFTRGETQALVTCTLGTERDAQKIDSIMGERTN 376
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
+ + V + G R ++ R + +V+ + I + ++ ++
Sbjct: 377 RFMLHYNFPPYSVGETGMVGSPKRREIGHGKLAWRGMNAVMPTAEEFPYSIRVVSEITES 436
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
+G + A++ G +AL D ++ + V +G + + E
Sbjct: 437 NGSSSMASVCGTSLALMDAGVPIKTSVAGIAMGLVKEGDDFVVLSD---------ILGDE 487
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
D D+D T G I +Q + +++ L A ++ + I
Sbjct: 488 DHLGDMDFKVAGTRDG-ITALQMDIKIEGITKEIMDIALQQAYGARVHILNVMDQAIGTH 546
Score = 94.1 bits (232), Expect = 1e-17, Method: Composition-based stats.
Identities = 34/228 (14%), Positives = 74/228 (32%), Gaps = 27/228 (11%)
Query: 14 ISLTRRV-SKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGMLPR 68
++L V ++ A+ + L GDT +L T + + + T G +P
Sbjct: 18 VTLETGVIARQADAAVLASMGDTTVLVTVVGKKVADLSRDFFPLTVNYQEKTYAAGKIPG 77
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
R GR I R+I R +R + Q+II +
Sbjct: 78 GFFKR------EGRPSEDETLIARLIDRPIRPLFPNGFKNEVQVIITVVSVDPQIEPDII 131
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
++ G A G + A G + G +++ + +T ++
Sbjct: 132 SMIGTSAA-------------LAISGIPFSGPLGAARVGYINGEYLLNPTVDQLATSSLN 178
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
T + ++ V+ A+ +++ + D+ ++ +
Sbjct: 179 LVVAGTKA-AVLMVESEAKA--LAEEIMLGAVTYGHDQQQVVVDAIAE 223
>gi|313887997|ref|ZP_07821675.1| tRNA nucleotidyltransferase [Peptoniphilus harei ACS-146-V-Sch2b]
gi|312845952|gb|EFR33335.1| tRNA nucleotidyltransferase [Peptoniphilus harei ACS-146-V-Sch2b]
Length = 238
Score = 144 bits (364), Expect = 7e-33, Method: Composition-based stats.
Identities = 101/232 (43%), Positives = 142/232 (61%), Gaps = 3/232 (1%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR RQ ++ R+I +T + +GS L++ G T ++ +A +E KVP ++R GW++
Sbjct: 1 MRED-RQNDEARQIRITPNYLDHPDGSVLIECGKTRVICSAMIENKVPGFLRGKNKGWLS 59
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
+EY MLP ST R R+ G+ GRS EI R+IGRALR+ +DL +G R I IDCDVI
Sbjct: 60 SEYSMLPGSTPTRKVRDISKGKLDGRSSEISRLIGRALRTCIDLDKIGERTIWIDCDVIS 119
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTAAITG+++AL ++ + + V K VAAIS G + G +VDLD+
Sbjct: 120 ADGGTRTAAITGSYIALKLAVKKALENKKFEEDPIVSK--VAAISVGKVNGVKLVDLDFK 177
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
EDS DVD N VM D ++E+QG+ E+ TFS + L AK I ++
Sbjct: 178 EDSNADVDLNVVMNDDFQLIEIQGTGEKDTFSIEELNEFLLGAKRCIGEIFD 229
>gi|319896566|ref|YP_004134759.1| polyribonucleotide nucleotidyltransferase [Haemophilus influenzae
F3031]
gi|317432068|emb|CBY80418.1| polyribonucleotide nucleotidyltransferase [Haemophilus influenzae
F3031]
Length = 709
Score = 144 bits (364), Expect = 7e-33, Method: Composition-based stats.
Identities = 42/241 (17%), Positives = 87/241 (36%), Gaps = 18/241 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR + +R + + V GS + G+T L ATL + ++ + +
Sbjct: 314 RIDGRTVDTVRALDICTGVLPRTHGSAIFTRGETQALAVATLGTERDAQIIDELTGERQD 373
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + R+ G + R + +V+ A + + +
Sbjct: 374 HFLFHYNFPPYSVGETGMIGSPKRREIGHGRL----AKRGVAAVMPSLAKFPYVVRVVSE 429
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ GA +AL D ++ + V + + +
Sbjct: 430 ITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEKEKFVVLSD---------I 480
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T G + +Q + + + LN AK ++ + +
Sbjct: 481 LGDEDHLGDMDFKVAGTREG-VTALQMDIKIEGITPEIMQIALNQAKSARMHILGVMEQA 539
Query: 238 I 238
I
Sbjct: 540 I 540
Score = 89.9 bits (221), Expect = 2e-16, Method: Composition-based stats.
Identities = 32/228 (14%), Positives = 70/228 (30%), Gaps = 27/228 (11%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----HGWITAEYGMLPR 68
++L +++ A + + DT + T ++ V + T G +P
Sbjct: 15 VTLETGAIARQATAAVMASMDDTTVFVTVVAKKDVKEGQDFFPLTVNYQERTYAAGKIPG 74
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
R GR I R+I R +R + Q++ +
Sbjct: 75 GFFKR------EGRPSEGETLIARLIDRPIRPLFPEGFFNEIQVVATVVSVNPQISPDLV 128
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+ GA A G + A G + +++ E +D
Sbjct: 129 AMIGASAA-------------LTLSGVPFNGPIGAARVGFIDNQLVLNPTMAEQKQSRLD 175
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
T ++ V+ A+ +++ A + + +++ K+
Sbjct: 176 LVVAGT-DKAVLMVESEADI--LTEEQMLAAVVFGHQQQQVVVEAIKE 220
>gi|329123749|ref|ZP_08252309.1| polyribonucleotide nucleotidyltransferase [Haemophilus aegyptius
ATCC 11116]
gi|327469948|gb|EGF15413.1| polyribonucleotide nucleotidyltransferase [Haemophilus aegyptius
ATCC 11116]
Length = 714
Score = 144 bits (364), Expect = 7e-33, Method: Composition-based stats.
Identities = 42/241 (17%), Positives = 87/241 (36%), Gaps = 18/241 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR + +R + + V GS + G+T L ATL + ++ + +
Sbjct: 319 RIDGRTVDTVRALDICTGVLPRTHGSAIFTRGETQALAVATLGTERDAQIIDELTGERQD 378
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + R+ G + R + +V+ A + + +
Sbjct: 379 HFLFHYNFPPYSVGETGMIGSPKRREIGHGRL----AKRGVAAVMPSLAKFPYVVRVVSE 434
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ GA +AL D ++ + V + + +
Sbjct: 435 ITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEKEKFVVLSD---------I 485
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T G + +Q + + + LN AK ++ + +
Sbjct: 486 LGDEDHLGDMDFKVAGTREG-VTALQMDIKIEGITPEIMQIALNQAKSARMHILGVMEQA 544
Query: 238 I 238
I
Sbjct: 545 I 545
Score = 90.7 bits (223), Expect = 2e-16, Method: Composition-based stats.
Identities = 32/228 (14%), Positives = 70/228 (30%), Gaps = 27/228 (11%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----HGWITAEYGMLPR 68
++L +++ A + + DT + T ++ V + T G +P
Sbjct: 20 VTLETGAIARQATAAVMASMDDTTVFVTVVAKKDVKEGQDFFPLTVNYQERTYAAGKIPG 79
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
R GR I R+I R +R + Q++ +
Sbjct: 80 GFFKR------EGRPSEGETLIARLIDRPIRPLFPEGFFNEIQVVATVVSVNPQISPDLV 133
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+ GA A G + A G + +++ E +D
Sbjct: 134 AMIGASAA-------------LTLSGVPFNGPIGAARVGFIDNQFVLNPTMAEQKQSRLD 180
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
T ++ V+ A+ +++ A + + +++ K+
Sbjct: 181 LVVAGT-DKAVLMVESEADI--LTEEQMLAAVVFGHQQQQVVVEAIKE 225
>gi|227486455|ref|ZP_03916771.1| polynucleotide phosphorylase/polyadenylase [Anaerococcus
lactolyticus ATCC 51172]
gi|227235636|gb|EEI85651.1| polynucleotide phosphorylase/polyadenylase [Anaerococcus
lactolyticus ATCC 51172]
Length = 718
Score = 144 bits (364), Expect = 7e-33, Method: Composition-based stats.
Identities = 44/243 (18%), Positives = 87/243 (35%), Gaps = 19/243 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRN-----TK 55
+R GR+ ++R +S V GS L + G T +L+ TL + +
Sbjct: 311 IRPDGRELTEIRPLSAEAGVLPRVHGSGLFQRGQTQVLSIVTLGSPADSQLIDGLNIEDV 370
Query: 56 HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115
+Y P G+ R+ G RAL V+ + +
Sbjct: 371 EKRYMHQYNFPPFCVGDVRPLRGPGRREIGHGHL----AERALVPVLPDEKDFPYTMRVV 426
Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIV 175
+V+ ++G + A+I G+ ++L D ++ + + + +I
Sbjct: 427 SEVLSSNGSSSQASICGSTLSLMDAGVPIKKPVAGIAMGLIKEDDSISILTD-------- 478
Query: 176 DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
+ ED D+D T G I +Q + + +++ L AKD ++ + +
Sbjct: 479 -IQGLEDHLGDMDFKVAGTRDG-ITALQMDMKISGITEEVLRQSLADAKDARFRILDVIE 536
Query: 236 DVI 238
I
Sbjct: 537 AAI 539
Score = 89.1 bits (219), Expect = 5e-16, Method: Composition-based stats.
Identities = 46/233 (19%), Positives = 76/233 (32%), Gaps = 27/233 (11%)
Query: 13 EISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEK----VPMWIRNTKHGWITAEYGMLP 67
+ +T ++ A G+CL++ GDT LL TA EK + + G +P
Sbjct: 14 DFEVTIGKYAEQANGACLIQSGDTTLLVTAVASEKPREGIDFFPLICDFQEKLYAVGKIP 73
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R G+ + I R + R LR + QII + D
Sbjct: 74 GGFLRR------EGKASDEATLIARQMDRPLRPLFPEDYYNDVQIIATVLSMDHDHLPDP 127
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
GA +A G V A G + G +V+ + + +
Sbjct: 128 LTTIGASIA-------------LGISDIPFNGPVGACMVGKVDGKLVVNPNEEDRKKSQL 174
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
+ G I V+ A + + LA D I D+ + +I +
Sbjct: 175 ELTVAG-RKGAINMVEAGANE--LDESEMLEAMLLALDEIGDISDFIQTIIDD 224
>gi|229844934|ref|ZP_04465071.1| polynucleotide phosphorylase/polyadenylase [Haemophilus influenzae
6P18H1]
gi|229812068|gb|EEP47760.1| polynucleotide phosphorylase/polyadenylase [Haemophilus influenzae
6P18H1]
Length = 709
Score = 144 bits (364), Expect = 7e-33, Method: Composition-based stats.
Identities = 42/241 (17%), Positives = 87/241 (36%), Gaps = 18/241 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR + +R + + V GS + G+T L ATL + ++ + +
Sbjct: 314 RIDGRTVDTVRALDICTGVLPRTHGSAIFTRGETQALAVATLGTERDAQIIDELTGERQD 373
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + R+ G + R + +V+ A + + +
Sbjct: 374 HFLFHYNFPPYSVGETGMIGSPKRREIGHGRL----AKRGVAAVMPSLAEFPYVVRVVSE 429
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ GA +AL D ++ + V + + +
Sbjct: 430 ITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEEEKFVVLSD---------I 480
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T G + +Q + + + LN AK ++ + +
Sbjct: 481 LGDEDHLGDMDFKVAGTREG-VTALQMDIKIEGITPEIMQIALNQAKSARMHILGVMEQA 539
Query: 238 I 238
I
Sbjct: 540 I 540
Score = 91.4 bits (225), Expect = 8e-17, Method: Composition-based stats.
Identities = 32/228 (14%), Positives = 70/228 (30%), Gaps = 27/228 (11%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----HGWITAEYGMLPR 68
++L +++ A + + DT + T ++ V + T G +P
Sbjct: 15 VTLETGAIARQATAAVMASMDDTTVFVTVVAKKDVKEGQDFFPLTVNYQERTYAAGKIPG 74
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
R GR + R+I R +R + Q++ +
Sbjct: 75 GFFKR------EGRPSEGETLLARLIDRPIRPLFPEGFFNEIQVVATVVSVNPQISPDLV 128
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+ GA A G + A G + +++ E +D
Sbjct: 129 AMIGASAA-------------LTLSGVPFNGPIGAARVGFIDNQFVLNPTMAEQKQSRLD 175
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
T ++ V+ A+ +++ A + + +I+ K+
Sbjct: 176 LVVAGT-DKAVLMVESEADI--LTEEQMLAAVVFGHQQQQVVIEAIKE 220
>gi|30064504|ref|NP_838675.1| polynucleotide phosphorylase/polyadenylase [Shigella flexneri 2a
str. 2457T]
gi|56480278|ref|NP_708965.2| polynucleotide phosphorylase/polyadenylase [Shigella flexneri 2a
str. 301]
gi|260857293|ref|YP_003231184.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli
O26:H11 str. 11368]
gi|260869916|ref|YP_003236318.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli
O111:H- str. 11128]
gi|309793742|ref|ZP_07688168.1| polyribonucleotide nucleotidyltransferase [Escherichia coli MS
145-7]
gi|30042763|gb|AAP18486.1| polynucleotide phosphorylase [Shigella flexneri 2a str. 2457T]
gi|56383829|gb|AAN44672.2| polynucleotide phosphorylase [Shigella flexneri 2a str. 301]
gi|257755942|dbj|BAI27444.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli
O26:H11 str. 11368]
gi|257766272|dbj|BAI37767.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli
O111:H- str. 11128]
gi|281602548|gb|ADA75532.1| Polynucleotide phosphorylase [Shigella flexneri 2002017]
gi|308122699|gb|EFO59961.1| polyribonucleotide nucleotidyltransferase [Escherichia coli MS
145-7]
Length = 734
Score = 144 bits (364), Expect = 7e-33, Method: Composition-based stats.
Identities = 45/242 (18%), Positives = 92/242 (38%), Gaps = 18/242 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR+++ +R + + V GS L G+T L TATL + +V + +
Sbjct: 338 RIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVLDELMGERTD 397
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + R+ G + R + +V+ + + +
Sbjct: 398 TFLFHYNFPPYSVGETGMVGSPKRREIGHGRL----AKRGVLAVMPDMDKFPYTVRVVSE 453
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ GA +AL D ++ + V +G + +
Sbjct: 454 ITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLSD---------I 504
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D + G I +Q + +++ LN AK ++ + +
Sbjct: 505 LGDEDHLGDMDFKVAGSREG-ISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQA 563
Query: 238 IS 239
I+
Sbjct: 564 IN 565
Score = 95.7 bits (236), Expect = 5e-18, Method: Composition-based stats.
Identities = 37/232 (15%), Positives = 76/232 (32%), Gaps = 27/232 (11%)
Query: 14 ISLTRRV-SKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----HGWITAEYGMLPR 68
++L + ++ A + +V DT + T ++K + T G +P
Sbjct: 39 VTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVNYQERTYAAGRIPG 98
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
S R GR I R+I R +R + + Q+I +
Sbjct: 99 SFFRR------EGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVNPDIV 152
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+ GA A G + A G + +++ E +D
Sbjct: 153 AMIGASAA-------------LSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLD 199
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
T++ ++ V+ AE S+D + ++ +I+ +++
Sbjct: 200 LVVAGTEA-AVLMVESEAEL--LSEDQMLGAVVFGHEQQQVVIQNINELVKE 248
>gi|260582885|ref|ZP_05850670.1| polyribonucleotide nucleotidyltransferase [Haemophilus influenzae
NT127]
gi|260094098|gb|EEW78001.1| polyribonucleotide nucleotidyltransferase [Haemophilus influenzae
NT127]
Length = 709
Score = 144 bits (364), Expect = 7e-33, Method: Composition-based stats.
Identities = 42/241 (17%), Positives = 87/241 (36%), Gaps = 18/241 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR + +R + + V GS + G+T L ATL + ++ + +
Sbjct: 314 RIDGRTVDTVRALDICTGVLPRTHGSAIFTRGETQALAVATLGTERDAQIIDELTGERQD 373
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + R+ G + R + +V+ A + + +
Sbjct: 374 HFLFHYNFPPYSVGETGMIGSPKRREIGHGRL----AKRGVAAVMPSLAEFPYVVRVVSE 429
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ GA +AL D ++ + V + + +
Sbjct: 430 ITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEEEKFVVLSD---------I 480
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T G + +Q + + + LN AK ++ + +
Sbjct: 481 LGDEDHLGDMDFKVAGTREG-VTALQMDIKIEGITPEIMQIALNQAKSARMHILGVMEQA 539
Query: 238 I 238
I
Sbjct: 540 I 540
Score = 92.2 bits (227), Expect = 6e-17, Method: Composition-based stats.
Identities = 33/232 (14%), Positives = 70/232 (30%), Gaps = 27/232 (11%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----HGWITAEYGMLPR 68
++L +++ A + + DT + T ++ V + T G +P
Sbjct: 15 VTLETGAIARQATAAVMASMDDTTVFVTVVAKKDVKEGQDFFPLTVNYQERTYAAGKIPG 74
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
R GR I R+I R +R + Q++ +
Sbjct: 75 GFFKR------EGRPSEGETLIARLIDRPIRPLFPEGFFNEIQVVATVVSVNPQISPDLV 128
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+ GA A G + A G + +++ E +D
Sbjct: 129 AMIGASAA-------------LTLSGVPFNGPIGAARVGFIDNQFVLNPTMAEQKQSRLD 175
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
T ++ V+ A+ +++ A + + +I+ K+
Sbjct: 176 LVVAGT-DKAVLMVESEADI--LTEEQMLAAVVFGHQQQQVVIEAIKEFTKE 224
>gi|126640439|ref|YP_001083423.1| polynucleotide phosphorylase/polyadenylase [Acinetobacter baumannii
ATCC 17978]
Length = 662
Score = 144 bits (364), Expect = 7e-33, Method: Composition-based stats.
Identities = 48/239 (20%), Positives = 89/239 (37%), Gaps = 10/239 (4%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R+ GR +R + + V + A GS L G+T L T TL + +T G T
Sbjct: 282 RIDGRDTKTVRALDVQVGVLERAHGSALFTRGETQALVTTTLGNTRDALMVDTLAGTKTD 341
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
+ + V R R+ R +++V+ + I I D+ ++
Sbjct: 342 NFMLHYNFPAYSVGETGRESGPKRREIGHGRLARRGVQAVLPAADRFPYVIRIVSDITES 401
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
+G + A++ GA ++L D ++ + V +G A+ + E
Sbjct: 402 NGSSSMASVCGASLSLMDAGVPLKAPVAGIAMGLVKEGERFAVLSD---------ILGDE 452
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
D D+D + +G I +Q + +++ LN A ++ VIS
Sbjct: 453 DHLGDMDFKVAGSANG-ITALQMDIKIEGITEEIMEVALNQAFAGRMHILNEMNKVISR 510
Score = 66.4 bits (160), Expect = 3e-09, Method: Composition-based stats.
Identities = 31/191 (16%), Positives = 61/191 (31%), Gaps = 22/191 (11%)
Query: 46 KVPMWIRNTKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLS 105
+ + G +P G R GR I R+I R +R +
Sbjct: 19 GQDFFPLTVNYQEKQYAAGRIPGGYGKR------EGRASEAETLISRLIDRPIRPLFPEG 72
Query: 106 ALGSRQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAIS 165
Q+ AA+ G AL +G + A
Sbjct: 73 YYNEIQVTATVVSSDKTMEADIAAMLGTSAALAIAGT-------------PFRGPIGAAR 119
Query: 166 CGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKD 225
G++ G +++ ++ + + D+D T+S ++ V+ A+ S+D + D
Sbjct: 120 VGLINGEYVLNPNFEQMAQSDLDLVVAGTES-AVLMVESEAKE--LSEDQMLGAVLFGHD 176
Query: 226 RIADLIKLQKD 236
+ I+ +
Sbjct: 177 EMQIAIQAINE 187
>gi|323183119|gb|EFZ68517.1| polyribonucleotide nucleotidyltransferase [Escherichia coli 1357]
Length = 696
Score = 144 bits (364), Expect = 7e-33, Method: Composition-based stats.
Identities = 45/242 (18%), Positives = 92/242 (38%), Gaps = 18/242 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR+++ +R + + V GS L G+T L TATL + +V + +
Sbjct: 300 RIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVLDELMGERTD 359
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + R+ G + R + +V+ + + +
Sbjct: 360 TFLFHYNFPPYSVGETGMVGSPKRREIGHGRL----AKRGVLAVMPDMDKFPYTVRVVSE 415
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ GA +AL D ++ + V +G + +
Sbjct: 416 ITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLSD---------I 466
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D + G I +Q + +++ LN AK ++ + +
Sbjct: 467 LGDEDHLGDMDFKVAGSREG-ISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQA 525
Query: 238 IS 239
I+
Sbjct: 526 IN 527
Score = 95.3 bits (235), Expect = 6e-18, Method: Composition-based stats.
Identities = 37/232 (15%), Positives = 76/232 (32%), Gaps = 27/232 (11%)
Query: 14 ISLTRRV-SKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----HGWITAEYGMLPR 68
++L + ++ A + +V DT + T ++K + T G +P
Sbjct: 1 MTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVNYQERTYAAGRIPG 60
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
S R GR I R+I R +R + + Q+I +
Sbjct: 61 SFFRR------EGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVNPDIV 114
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+ GA A G + A G + +++ E +D
Sbjct: 115 AMIGASAA-------------LSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLD 161
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
T++ ++ V+ AE S+D + ++ +I+ +++
Sbjct: 162 LVVAGTEA-AVLMVESEAEL--LSEDQMLGAVVFGHEQQQVVIQNINELVKE 210
>gi|94987448|ref|YP_595381.1| polynucleotide phosphorylase/polyadenylase [Lawsonia
intracellularis PHE/MN1-00]
gi|187610280|sp|Q1MPL7|PNP_LAWIP RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|94731697|emb|CAJ55060.1| Polyribonucleotide nucleotidyltransferase (polynucleotide
phosphorylase) [Lawsonia intracellularis PHE/MN1-00]
Length = 736
Score = 144 bits (364), Expect = 7e-33, Method: Composition-based stats.
Identities = 40/242 (16%), Positives = 80/242 (33%), Gaps = 19/242 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
+R+ GR +R I++ + GS L G+T L TL + + +
Sbjct: 322 LRIDGRDTITVRPIAIEVGLLPRTHGSALFTRGETQSLCITTLGSSTDNQRVDSLAGDTV 381
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P S G R R + +AL+ ++ + I
Sbjct: 382 KNFMLHYNFPPFSVGEVKP-----VRVSRREIGHGALAEKALKYILPSQNTFPFTVRIVA 436
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+ ++++G + AAI G ++L D + + + + +
Sbjct: 437 ETLESNGSSSMAAICGGCLSLMDAGVPISAPVAGVAMGLIKEDDQFIVLTD--------- 487
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED+ D+D T G I VQ + + D + A++ ++
Sbjct: 488 IIGDEDAFGDMDFKIAGTTKG-ITAVQMDIKITGLTTDVMRKAMEQAREARIHILSEMAK 546
Query: 237 VI 238
+
Sbjct: 547 AL 548
Score = 84.9 bits (208), Expect = 9e-15, Method: Composition-based stats.
Identities = 48/229 (20%), Positives = 78/229 (34%), Gaps = 25/229 (10%)
Query: 13 EISLTRRV-SKYAEGSCLVKFGDTHLLTTAT---LEEKVPMWIRNTKHGWITAEYGMLPR 68
EI + A GS V+ G T +L T LE + ++ G +P
Sbjct: 18 EIIFETGYMATQANGSLTVQCGGTIVLVTVCSQPLESDKGFFPLTVEYSEKMYAAGRIPG 77
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
S R GR R I R+I R +R + QI+ + + +
Sbjct: 78 SFFRR-----EIGRPSERETLISRLIDRPIRPMFPKGLAEDVQILANVISSDQENESDIL 132
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+TGA A+ S + +AA G L G +++ E D++
Sbjct: 133 AVTGASAAVM-------------LSSLPFECAIAAGRIGRLNGQFVLNPTINEIELSDLN 179
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
F + +V V+ E ++ L I +I LQ +
Sbjct: 180 IVFAASSE-AVVMVE--GEANVVEEEIIIEALEWGHKEIQPIITLQNKI 225
>gi|319775898|ref|YP_004138386.1| polyribonucleotide nucleotidyltransferase [Haemophilus influenzae
F3047]
gi|317450489|emb|CBY86706.1| polyribonucleotide nucleotidyltransferase [Haemophilus influenzae
F3047]
Length = 709
Score = 144 bits (364), Expect = 7e-33, Method: Composition-based stats.
Identities = 42/241 (17%), Positives = 87/241 (36%), Gaps = 18/241 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR + +R + + V GS + G+T L ATL + ++ + +
Sbjct: 314 RIDGRTIDTVRALDICTGVLPRTHGSAIFTRGETQALAVATLGTERDAQIIDELTGERQD 373
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + R+ G + R + +V+ A + + +
Sbjct: 374 HFLFHYNFPPYSVGETGMIGSPKRREIGHGRL----AKRGVAAVMPSLAKFPYVVRVVSE 429
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ GA +AL D ++ + V + + +
Sbjct: 430 ITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEKEKFVVLSD---------I 480
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T G + +Q + + + LN AK ++ + +
Sbjct: 481 LGDEDHLGDMDFKVAGTREG-VTALQMDIKIEGITPEIMQIALNQAKSARMHILGVMEQA 539
Query: 238 I 238
I
Sbjct: 540 I 540
Score = 91.8 bits (226), Expect = 7e-17, Method: Composition-based stats.
Identities = 33/228 (14%), Positives = 70/228 (30%), Gaps = 27/228 (11%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----HGWITAEYGMLPR 68
++L +++ A + + DT + T ++ V + T G +P
Sbjct: 15 VTLETGAIARQATAAVMASMDDTTVFVTVVAKKDVKEGQDFFPLTVNYQERTYAAGKIPG 74
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
R GR I R+I R +R + Q++ +
Sbjct: 75 GFFKR------EGRPSEGETLIARLIDRPIRPLFPEGFFNEIQVVATVVSVNPQISPDLV 128
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+ GA A G + A G + +++ E +D
Sbjct: 129 AMIGASAA-------------LTLSGVPFNGPIGAARVGFIDNQFVLNPTMAEQKQSRLD 175
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
T ++ V+ A+ +++ A + + +I+ K+
Sbjct: 176 LVVAGT-DKAVLMVESEADI--LTEEQMLAAVVFGHQQQQVVIEAIKE 220
>gi|148825487|ref|YP_001290240.1| polynucleotide phosphorylase/polyadenylase [Haemophilus influenzae
PittEE]
gi|187610272|sp|A5UAQ6|PNP_HAEIE RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|148715647|gb|ABQ97857.1| polyribonucleotide nucleotidyltransferase [Haemophilus influenzae
PittEE]
Length = 709
Score = 144 bits (364), Expect = 7e-33, Method: Composition-based stats.
Identities = 42/241 (17%), Positives = 87/241 (36%), Gaps = 18/241 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR + +R + + V GS + G+T L ATL + ++ + +
Sbjct: 314 RIDGRTVDTVRALDICTGVLPRTHGSAIFTRGETQALAVATLGTERDAQIIDELTGERQD 373
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + R+ G + R + +V+ A + + +
Sbjct: 374 HFLFHYNFPPYSVGETGMIGSPKRREIGHGRL----AKRGVAAVMPSLAEFPYVVRVVSE 429
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ GA +AL D ++ + V + + +
Sbjct: 430 ITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEEEKFVVLSD---------I 480
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T G + +Q + + + LN AK ++ + +
Sbjct: 481 LGDEDHLGDMDFKVAGTREG-VTALQMDIKIEGITPEIMQIALNQAKSARMHILGVMEQA 539
Query: 238 I 238
I
Sbjct: 540 I 540
Score = 89.1 bits (219), Expect = 5e-16, Method: Composition-based stats.
Identities = 33/228 (14%), Positives = 70/228 (30%), Gaps = 27/228 (11%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----HGWITAEYGMLPR 68
++L +++ A + + DT + T ++ V + T G +P
Sbjct: 15 VTLETGAIARQATAAVMASMDDTTVFVTVVAKKDVKEGQDFFPLTVNYQERTYAAGKIPG 74
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
R GR I R+I R +R + Q++ +
Sbjct: 75 GFFKR------EGRPSEGETLIARLIDRPIRPLFPEGFFNEIQVVATVVSVNPQISPDLV 128
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+ GA A G + A G + +++ E +D
Sbjct: 129 AMIGASAA-------------LTLSGVPFNGPIGAARVGFIDNQFVLNPTMAEQKQSRLD 175
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
T ++ V+ +E +++ A + + +I+ K+
Sbjct: 176 LVVAGT-DKAVLMVE--SEADVLTEEQMLASVVFGHQQQQVVIEAIKE 220
>gi|237808986|ref|YP_002893426.1| polynucleotide phosphorylase/polyadenylase [Tolumonas auensis DSM
9187]
gi|259534170|sp|C4L8X0|PNP_TOLAT RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|237501247|gb|ACQ93840.1| Polyribonucleotide nucleotidyltransferase [Tolumonas auensis DSM
9187]
Length = 720
Score = 144 bits (364), Expect = 7e-33, Method: Composition-based stats.
Identities = 42/242 (17%), Positives = 84/242 (34%), Gaps = 18/242 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +R +S+ V GS L G+T L TL + + I +
Sbjct: 314 RIDGRDPQMIRALSVGTGVLPRVHGSALFTRGETQALVACTLGTERDAQTIDEITGERTD 373
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P G + R+ G + R + +V+ A + + +
Sbjct: 374 RFMLHYNFPPYCVGETGMMGSPKRREIGHGRL----ARRGVSAVIPSQAEFPYVVRVVSE 429
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ G +AL D ++ + V +G + +
Sbjct: 430 ITESNGSSSMASVCGTSLALMDAGVPIKASVAGIAMGLVKEGDSFVVLSD---------I 480
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T G + +Q + +++ L A+D ++ +
Sbjct: 481 LGDEDHLGDMDFKVAGTSEG-VTALQMDIKIEGITKEIMQIALKQARDARLHILTVMDKA 539
Query: 238 IS 239
I
Sbjct: 540 IG 541
Score = 91.8 bits (226), Expect = 7e-17, Method: Composition-based stats.
Identities = 36/228 (15%), Positives = 72/228 (31%), Gaps = 27/228 (11%)
Query: 14 ISLTRRV-SKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKHGWITAEYGMLPR 68
+++ V ++ A + +V DT +L T + E + + T G +P
Sbjct: 15 VTIETGVMARQATAAVMVSMDDTAVLVTVVGKKEAVEGRDFFPLTVNYQERTYAAGRIPG 74
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
R GR R+I R +R + L Q++ +
Sbjct: 75 GFFKR------EGRPSEGETLTARLIDRPIRPLFPEGFLNEVQVVATVMSVNPAVSPDIV 128
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+ G A G + A G + I++ E +D
Sbjct: 129 AMIGTSAA-------------LAISGIPFNGPIGAARVGYINDQYILNPSVVELQESKLD 175
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
T + ++ V+ +E A ++ + D++ +IK +
Sbjct: 176 LVVAGTAA-AVLMVE--SEAAILPEEVMLGAVVYGHDQLQTVIKAVNE 220
>gi|16272192|ref|NP_438401.1| polynucleotide phosphorylase/polyadenylase [Haemophilus influenzae
Rd KW20]
gi|1172546|sp|P44584|PNP_HAEIN RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|1573193|gb|AAC21898.1| polynucleotide phosphorylase (pnp) [Haemophilus influenzae Rd KW20]
Length = 709
Score = 144 bits (364), Expect = 7e-33, Method: Composition-based stats.
Identities = 42/241 (17%), Positives = 87/241 (36%), Gaps = 18/241 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR + +R + + V GS + G+T L ATL + ++ + +
Sbjct: 314 RIDGRTVDTVRALDICTGVLPRTHGSAIFTRGETQALAVATLGTERDAQIIDELTGERQD 373
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + R+ G + R + +V+ A + + +
Sbjct: 374 HFLFHYNFPPYSVGETGMIGSPKRREIGHGRL----AKRGVAAVMPSLAEFPYVVRVVSE 429
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ GA +AL D ++ + V + + +
Sbjct: 430 ITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEEEKFVVLSD---------I 480
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T G + +Q + + + LN AK ++ + +
Sbjct: 481 LGDEDHLGDMDFKVAGTREG-VTALQMDIKIEGITPEIMQIALNQAKSARMHILGVMEQA 539
Query: 238 I 238
I
Sbjct: 540 I 540
Score = 90.7 bits (223), Expect = 2e-16, Method: Composition-based stats.
Identities = 32/228 (14%), Positives = 70/228 (30%), Gaps = 27/228 (11%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----HGWITAEYGMLPR 68
++L +++ A + + DT + T ++ V + T G +P
Sbjct: 15 VTLETGAIARQATAAVMASMDDTTVFVTVVAKKDVKEGQDFFPLTVNYQERTYAAGKIPG 74
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
R GR I R+I R +R + Q++ +
Sbjct: 75 GFFKR------EGRPSEGETLIARLIDRPIRPLFPEGFFNEIQVVATVVSVNPQISPDLV 128
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+ GA A G + A G + +++ E +D
Sbjct: 129 AMIGASAA-------------LTLSGVPFNGPIGAARVGFIDNQFVLNPTMAEQKQSRLD 175
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
T ++ V+ A+ +++ A + + +++ K+
Sbjct: 176 LVVAGT-DKAVLMVESEADI--LTEEQMLAAVVFGHQQQQVVVEAIKE 220
>gi|332669877|ref|YP_004452885.1| ribonuclease PH [Cellulomonas fimi ATCC 484]
gi|332338915|gb|AEE45498.1| ribonuclease PH [Cellulomonas fimi ATCC 484]
Length = 262
Score = 144 bits (364), Expect = 7e-33, Method: Composition-based stats.
Identities = 119/235 (50%), Positives = 161/235 (68%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+R GR+ +++R ++LTRR EGS LV+FG T +L A+L E VP W + + GW+T
Sbjct: 8 LRADGRRPDELRPVTLTRRFLDAGEGSVLVEFGGTKVLCVASLTEGVPRWRKGSGEGWVT 67
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEY MLPR+T R RE+V GR GGR+QEI R+IGR+LR+VVD+SALG I++DCDV+Q
Sbjct: 68 AEYAMLPRATSTRSDRESVKGRVGGRTQEISRLIGRSLRAVVDVSALGENTIVLDCDVLQ 127
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTAAITGA+VAL D + + QVL+ VAA+S G++ G P++DL Y
Sbjct: 128 ADGGTRTAAITGAYVALADAVAWAQQRRLVPAGRQVLRDSVAAVSVGIVDGVPVLDLPYV 187
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
ED + D N V+T SG VEVQG+AE A F + ++L+LA A+L +LQ+
Sbjct: 188 EDVRAETDMNVVVTGSGTFVEVQGTAEHAPFDRRELDSLLDLALAGTAELTRLQR 242
>gi|145640150|ref|ZP_01795734.1| polynucleotide phosphorylase/polyadenylase [Haemophilus influenzae
R3021]
gi|229846318|ref|ZP_04466426.1| polynucleotide phosphorylase/polyadenylase [Haemophilus influenzae
7P49H1]
gi|145274736|gb|EDK14598.1| polynucleotide phosphorylase/polyadenylase [Haemophilus influenzae
22.4-21]
gi|229810411|gb|EEP46129.1| polynucleotide phosphorylase/polyadenylase [Haemophilus influenzae
7P49H1]
Length = 709
Score = 144 bits (364), Expect = 7e-33, Method: Composition-based stats.
Identities = 42/241 (17%), Positives = 87/241 (36%), Gaps = 18/241 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR + +R + + V GS + G+T L ATL + ++ + +
Sbjct: 314 RIDGRTVDTVRALDICTGVLPRTHGSAIFTRGETQALAVATLGTERDAQIIDELTGERQD 373
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + R+ G + R + +V+ A + + +
Sbjct: 374 HFLFHYNFPPYSVGETGMIGSPKRREIGHGRL----AKRGVAAVMPSLAEFPYVVRVVSE 429
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ GA +AL D ++ + V + + +
Sbjct: 430 ITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEEEKFVVLSD---------I 480
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T G + +Q + + + LN AK ++ + +
Sbjct: 481 LGDEDHLGDMDFKVAGTREG-VTALQMDIKIEGITPEIMQIALNQAKSARMHILGVMEQA 539
Query: 238 I 238
I
Sbjct: 540 I 540
Score = 92.2 bits (227), Expect = 6e-17, Method: Composition-based stats.
Identities = 33/228 (14%), Positives = 70/228 (30%), Gaps = 27/228 (11%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----HGWITAEYGMLPR 68
++L +++ A + + DT + T ++ V + T G +P
Sbjct: 15 VTLETGAIARQATAAVMASMDDTTVFVTVVAKKDVKEGQDFFPLTVNYQERTYAAGKIPG 74
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
R GR I R+I R +R + Q++ +
Sbjct: 75 GFFKR------EGRPSEGETLIARLIDRPIRPLFPEGFFNEIQVVATVVSVNPQISPDLV 128
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+ GA A G + A G + +++ E +D
Sbjct: 129 AMIGASAA-------------LTLSGVPFNGPIGAARVGFIDNQFVLNPTMAEQKQSRLD 175
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
T ++ V+ +E +++ A + + +I+ K+
Sbjct: 176 LVVAGT-DKAVLMVE--SEADVLTEEQMLAAVVFGHQQQQVVIEAIKE 220
>gi|145637206|ref|ZP_01792868.1| polynucleotide phosphorylase/polyadenylase [Haemophilus influenzae
PittHH]
gi|145269651|gb|EDK09592.1| polynucleotide phosphorylase/polyadenylase [Haemophilus influenzae
PittHH]
Length = 709
Score = 144 bits (364), Expect = 7e-33, Method: Composition-based stats.
Identities = 42/241 (17%), Positives = 87/241 (36%), Gaps = 18/241 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR + +R + + V GS + G+T L ATL + ++ + +
Sbjct: 314 RIDGRTVDTVRALDICTGVLPRTHGSAIFTRGETQALAVATLGTERDAQIIDELTGERQD 373
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + R+ G + R + +V+ A + + +
Sbjct: 374 HFLFHYNFPPYSVGETGMIGSPKRREIGHGRL----AKRGVAAVMPSLAEFPYVVRVVSE 429
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ GA +AL D ++ + V + + +
Sbjct: 430 ITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEEEKFVVLSD---------I 480
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T G + +Q + + + LN AK ++ + +
Sbjct: 481 LGDEDHLGDMDFKVAGTREG-VTALQMDIKIEGITPEIMQIALNQAKSARMHILGVMEQA 539
Query: 238 I 238
I
Sbjct: 540 I 540
Score = 92.2 bits (227), Expect = 6e-17, Method: Composition-based stats.
Identities = 33/228 (14%), Positives = 70/228 (30%), Gaps = 27/228 (11%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----HGWITAEYGMLPR 68
++L +++ A + + DT + T ++ V + T G +P
Sbjct: 15 VTLETGAIARQATAAVMASMDDTTVFVTVVAKKDVKEGQDFFPLTVNYQERTYAAGKIPG 74
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
R GR I R+I R +R + Q++ +
Sbjct: 75 GFFKR------EGRPSEGETLIARLIDRPIRPLFPEGFFNEIQVVATVVSVNPQISPDLV 128
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+ GA A G + A G + +++ E +D
Sbjct: 129 AMIGASAA-------------LTLSGVPFNGPIGAARVGFIDNQFVLNPTMAEQKQSRLD 175
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
T ++ V+ +E +++ A + + +I+ K+
Sbjct: 176 LVVAGT-DKAVLMVE--SEADVLTEEQMLAAVVFGHQQQQVVIEAIKE 220
>gi|68248838|ref|YP_247950.1| polynucleotide phosphorylase/polyadenylase [Haemophilus influenzae
86-028NP]
gi|145635136|ref|ZP_01790841.1| polynucleotide phosphorylase/polyadenylase [Haemophilus influenzae
PittAA]
gi|81336747|sp|Q4QNV7|PNP_HAEI8 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|68057037|gb|AAX87290.1| polyribonucleotide nucleotidyltransferase [Haemophilus influenzae
86-028NP]
gi|145267557|gb|EDK07556.1| polynucleotide phosphorylase/polyadenylase [Haemophilus influenzae
PittAA]
Length = 709
Score = 144 bits (364), Expect = 7e-33, Method: Composition-based stats.
Identities = 42/241 (17%), Positives = 87/241 (36%), Gaps = 18/241 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR + +R + + V GS + G+T L ATL + ++ + +
Sbjct: 314 RIDGRTVDTVRALDICTGVLPRTHGSAIFTRGETQALAVATLGTERDAQIIDELTGERQD 373
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + R+ G + R + +V+ A + + +
Sbjct: 374 HFLFHYNFPPYSVGETGMIGSPKRREIGHGRL----AKRGVAAVMPSLAEFPYVVRVVSE 429
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ GA +AL D ++ + V + + +
Sbjct: 430 ITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEEEKFVVLSD---------I 480
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T G + +Q + + + LN AK ++ + +
Sbjct: 481 LGDEDHLGDMDFKVAGTREG-VTALQMDIKIEGITPEIMQIALNQAKSARMHILGVMEQA 539
Query: 238 I 238
I
Sbjct: 540 I 540
Score = 90.3 bits (222), Expect = 2e-16, Method: Composition-based stats.
Identities = 33/228 (14%), Positives = 70/228 (30%), Gaps = 27/228 (11%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----HGWITAEYGMLPR 68
++L +++ A + + DT + T ++ V + T G +P
Sbjct: 15 VTLETGAIARQATAAVMASMDDTTVFVTVVAKKDVKEGQDFFPLTVNYQERTYAAGKIPG 74
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
R GR I R+I R +R + Q++ +
Sbjct: 75 GFFKR------EGRPSEGETLIARLIDRPIRPLFPEGFFNEIQVVATVVSVNPQISPDLV 128
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+ GA A G + A G + +++ E +D
Sbjct: 129 AMIGASAA-------------LTLSGVPFNGPIGAARVGFIDNQFVLNPTMAEQKQSRLD 175
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
T ++ V+ A+ +++ A + + +I+ K+
Sbjct: 176 LVVAGT-DKAVLMVESEADI--LTEEQMLAAVVFGHQQQQVVIEAVKE 220
>gi|328944853|gb|EGG39013.1| polyribonucleotide nucleotidyltransferase [Streptococcus sanguinis
SK1087]
Length = 733
Score = 144 bits (364), Expect = 8e-33, Method: Composition-based stats.
Identities = 43/242 (17%), Positives = 80/242 (33%), Gaps = 18/242 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56
+R GR+ +++R + GS L G T L+ T E ++ +
Sbjct: 317 VRPDGRKVDEIRPLDAEVDYLPRVHGSGLFTRGQTQALSVLTLAPMGETQIVDGLDPEYK 376
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y S G + A R+ G RAL V+ I +
Sbjct: 377 KRFMHHYNFPQYSVGETGRYGAPGRREIGHGALG----ERALEQVLPSLEEFPYAIRLVA 432
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V++++G + A+I +AL ++ + + G +
Sbjct: 433 EVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISDGSNYTVLTD--------- 483
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T G I +Q + + + L AK +++ L +
Sbjct: 484 IQGLEDHFGDMDFKVAGTREG-ITALQMDIKIEGITAEILTEALAQAKKARFEILDLIEA 542
Query: 237 VI 238
I
Sbjct: 543 TI 544
Score = 116 bits (291), Expect = 2e-24, Method: Composition-based stats.
Identities = 45/232 (19%), Positives = 87/232 (37%), Gaps = 26/232 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKV---PMWIRNTKHGWITAEYGMLP 67
RE+ + V+K A GS +V++G++ +LT AT+ +K+ + + G P
Sbjct: 13 RELVVETGQVAKQANGSAVVRYGESTVLTAATMSKKMATGDFFPLQVNYEEKMYAAGKYP 72
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R GR + R+I R +R + Q+I D +
Sbjct: 73 GGFNKR------EGRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDEDASPQM 126
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
AA+ G+ +A G +A + G + G I++ + +
Sbjct: 127 AAMFGSSLA-------------LSISDIPFNGPIAGVQIGYVDGEFIINPSKEQKEVSLL 173
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
+ T I V+ A+ S+D L + + +LI Q+++++
Sbjct: 174 ELTVAGTKD-AINMVESGAKE--LSEDVMLEALLKGHEAVKELIAFQEEIVA 222
>gi|296117686|ref|ZP_06836270.1| polyribonucleotide nucleotidyltransferase [Corynebacterium
ammoniagenes DSM 20306]
gi|295969417|gb|EFG82658.1| polyribonucleotide nucleotidyltransferase [Corynebacterium
ammoniagenes DSM 20306]
Length = 779
Score = 144 bits (364), Expect = 8e-33, Method: Composition-based stats.
Identities = 41/242 (16%), Positives = 88/242 (36%), Gaps = 14/242 (5%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKH 56
R+ GR +R++ + GS L + G+T +L TL+ E+ + +
Sbjct: 395 FRIDGRAAEDIRDLGAEIGLIPRVHGSALFERGETQILGVTTLDMLKMEQTIDSLTPVES 454
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P STG + + R+ G RAL V+ I
Sbjct: 455 KRYIHHYNFPPYSTGETGRVGSPKRREIGHGAL----AERALLPVIPPREQFPYTIRQVS 510
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+ + ++G T ++ + ++L++ ++ + V + G + D
Sbjct: 511 EALGSNGSTSMGSVCASTMSLYNAGVPLKAPVAGIAMGLV-----SGEVDGEERFVALTD 565
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED+ D+D T +I +Q + + L+ A++ +++ + +
Sbjct: 566 ILGAEDAFGDMDFKVAGTSD-YITALQLDTKLDGIPSEVLANALSQARNAREEILDIMAE 624
Query: 237 VI 238
I
Sbjct: 625 GI 626
Score = 73.0 bits (177), Expect = 4e-11, Method: Composition-based stats.
Identities = 46/246 (18%), Positives = 72/246 (29%), Gaps = 32/246 (13%)
Query: 12 REISLTRR-VSKYAEGSCLVKF-GDTHLLTTATLEEKVPMWIRNT----KHGWITAEYGM 65
R I+ +++ A+GS F DT LLTT T + + G
Sbjct: 62 RTITFETGQLARQADGSVTTYFDDDTMLLTTVTASNQPREGLDFFPLTVDVEERMYAAGK 121
Query: 66 LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125
+P S R R + R+I R LR Q+I +
Sbjct: 122 IPGSFFRR------EARPSTEAILACRLIDRPLRPTFVKGLRNEVQVINTVLSLDPAEYY 175
Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185
AI G+ A + +++ + G +P + +
Sbjct: 176 DVIAINGSSAATQLSGLPVSGPVGGVRMALLADDKH---PEGQWVAFPNAEQHERALFEM 232
Query: 186 DVDANFVMTDSG-------HIVEVQGS---------AERATFSQD-HFFAMLNLAKDRIA 228
V V + I+ V+ AE A Q+ A L AK I
Sbjct: 233 VVAGRIVSRKNKGKNVDDVAIMMVEAGAGVHVHERVAEGAPAPQESTVAAGLEAAKPFIK 292
Query: 229 DLIKLQ 234
L + Q
Sbjct: 293 TLCEAQ 298
>gi|237730084|ref|ZP_04560565.1| polyribonucleotide nucleotidyltransferase [Citrobacter sp. 30_2]
gi|226908690|gb|EEH94608.1| polyribonucleotide nucleotidyltransferase [Citrobacter sp. 30_2]
Length = 710
Score = 144 bits (364), Expect = 8e-33, Method: Composition-based stats.
Identities = 43/242 (17%), Positives = 90/242 (37%), Gaps = 18/242 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR+++ +R + + V GS L G+T L TATL + + + +
Sbjct: 315 RIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTTRDAQNLDELMGERTD 374
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P G + R+ G + R + +V+ + + +
Sbjct: 375 NFLFHYNFPPYCVGETGMVGSPKRREIGHGRL----AKRGVLAVMPELDKFPYTVRVVSE 430
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ GA +AL D ++ + V +G + +
Sbjct: 431 ITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNFVVLSD---------I 481
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D + G I +Q + +++ LN AK ++ + +
Sbjct: 482 LGDEDHLGDMDFKVAGSRDG-ISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQA 540
Query: 238 IS 239
I+
Sbjct: 541 IN 542
Score = 94.9 bits (234), Expect = 1e-17, Method: Composition-based stats.
Identities = 37/232 (15%), Positives = 75/232 (32%), Gaps = 27/232 (11%)
Query: 14 ISLTRRV-SKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----HGWITAEYGMLPR 68
++L + ++ A + +V DT + T ++K + T G +P
Sbjct: 16 VTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVNYQERTYAAGRIPG 75
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
S R GR I R+I R +R + + Q+I +
Sbjct: 76 SFFRR------EGRPSEGETLIARLIDRPVRPLFPEGFVNEVQVIATVVSVNPQVNPDIV 129
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+ GA A G + A G + +++ E +D
Sbjct: 130 AMIGASAA-------------LTLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLD 176
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
T++ ++ V+ AE S+D + ++ +I+ ++
Sbjct: 177 LVVAGTEA-AVLMVESEAEL--LSEDQMLGAVVFGHEQQQVVIQAINELAKE 225
>gi|257791379|ref|YP_003181985.1| Polyribonucleotide nucleotidyltransferase [Eggerthella lenta DSM
2243]
gi|257475276|gb|ACV55596.1| Polyribonucleotide nucleotidyltransferase [Eggerthella lenta DSM
2243]
Length = 741
Score = 144 bits (364), Expect = 8e-33, Method: Composition-based stats.
Identities = 49/242 (20%), Positives = 86/242 (35%), Gaps = 18/242 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R GR+ +R + + GS L + G T L+ TL E + I +
Sbjct: 315 RADGRRPEDIRPLYIVPGYLPRVHGSGLFQRGQTQALSVCTLGMLNEWQRLDTIDPAEGK 374
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
+Y P TG + A R+ G RAL V+ I + +
Sbjct: 375 RYMHQYNFPPYCTGETGRMGAPKRREIGHGAL----AERALIPVLPSEDEFPYAIRVVSE 430
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
V++++G + A+ G+ +AL D ++ + + + +G I +
Sbjct: 431 VLESNGSSSMASTCGSTLALMDAGVPIKAPVSGIAMGLIKEGDDVVILSD---------I 481
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T G I +Q + S D L A + A ++ +
Sbjct: 482 QGIEDFLGDMDFKVCGTAKG-ITALQMDNKARGLSVDILARALKQASEGRAYILDAMLET 540
Query: 238 IS 239
I+
Sbjct: 541 IA 542
Score = 92.6 bits (228), Expect = 4e-17, Method: Composition-based stats.
Identities = 42/228 (18%), Positives = 77/228 (33%), Gaps = 24/228 (10%)
Query: 15 SLTRR-VSKYAEGSCLVKFGDTHLLTTATL---EEKVPMWIRNTKHGWITAEYGMLPRST 70
L ++K A GS +V GDT +L TA + E+ + G +P
Sbjct: 16 RLETGELAKQATGSVVVTQGDTTVLVTAVISKEEKDYDFFPLTVDFIEKMYAVGRIPGGY 75
Query: 71 GNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAI 130
R R + RM+ R +R ++ V+ + T +
Sbjct: 76 LKR------EARPSDKGTLTARMVDRPIRPGFADGFKREVHVVCTTLVVDSINPPDTICV 129
Query: 131 TGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDAN 190
GA AL + + + I + G IV+ + E D++
Sbjct: 130 MGASAALMLGAAPFDGPAACVR-----------IGRDVETGEFIVNPTFEESENSDLELT 178
Query: 191 FVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
T +I V+ A+ S++ A + ++ IA + Q+ +
Sbjct: 179 IAGTAD-YISMVEAGADE--ISEEDMLAAMTFGQEAIAAFCEAQQRFL 223
>gi|326794274|ref|YP_004312094.1| polyribonucleotide nucleotidyltransferase [Marinomonas mediterranea
MMB-1]
gi|326545038|gb|ADZ90258.1| Polyribonucleotide nucleotidyltransferase [Marinomonas mediterranea
MMB-1]
Length = 702
Score = 144 bits (364), Expect = 8e-33, Method: Composition-based stats.
Identities = 45/242 (18%), Positives = 90/242 (37%), Gaps = 18/242 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +R I++ + K GS L G+T + T TL + ++ +
Sbjct: 315 RIDGRDNQTVRPINVEVGLLKKTHGSSLFTRGETQAIATCTLGTSRDAQISDGLAGENKD 374
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + V R+ G + R +++V+ I I +
Sbjct: 375 SFMLHYNFPPYSVGECGRMGGVGRREIGHGRL----ARRGVQAVLPSEDEFPYTIRIVSE 430
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ GA +++ D ++ + V + A+ +
Sbjct: 431 ITESNGSSSMASVCGASLSMMDAGVPLKAPVAGIAMGLVKEDDGFAVLTD---------I 481
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T+ G I +Q + +++ L A D +++ V
Sbjct: 482 LGDEDHLGDMDFKVAGTEEG-ITALQMDIKIEGINEEIMDIALTQAMDARKYILREMATV 540
Query: 238 IS 239
I
Sbjct: 541 IG 542
Score = 102 bits (253), Expect = 5e-20, Method: Composition-based stats.
Identities = 34/233 (14%), Positives = 67/233 (28%), Gaps = 28/233 (12%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT----KHGWITAEYGMLPR 68
++L +++ A G+ L GD +L T + + T G +P
Sbjct: 15 VTLETGRIARQATGAVLCTLGDAQVLATVVGAKTAKPGQDFFPLSVHYQERTYAVGKIPG 74
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
R GR + R+I R +R + + Q++ D
Sbjct: 75 GFLKR------EGRPSEKETLTSRLIDRPIRPLFPKGFMNEVQVVCTVMSTNTDLDADIP 128
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY-PIVDLDYGEDSTIDV 187
A+ A G + A G +++ E +
Sbjct: 129 AMLATSAA-------------LAISGIPFNGPIGAARVGFNDEEGYLLNPSNSELDGSLL 175
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
D T ++ V+ A+ ++D + A + I + +S
Sbjct: 176 DMVVAGTKD-AVLMVESEAQE--LTEDEMLGAVLYAHKEMQTAITAINEFVSE 225
>gi|260580886|ref|ZP_05848711.1| polyribonucleotide nucleotidyltransferase [Haemophilus influenzae
RdAW]
gi|260092509|gb|EEW76447.1| polyribonucleotide nucleotidyltransferase [Haemophilus influenzae
RdAW]
Length = 709
Score = 144 bits (364), Expect = 8e-33, Method: Composition-based stats.
Identities = 42/241 (17%), Positives = 87/241 (36%), Gaps = 18/241 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR + +R + + V GS + G+T L ATL + ++ + +
Sbjct: 314 RIDGRTVDTVRALDICTGVLPRTHGSAIFTRGETQALAVATLGTERDAQIIDELTGERQD 373
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + R+ G + R + +V+ A + + +
Sbjct: 374 HFLFHYNFPPYSVGETGMIGSPKRREIGHGRL----AKRGVAAVMPSLAEFPYVVRVVSE 429
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ GA +AL D ++ + V + + +
Sbjct: 430 ITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEEEKFVVLSD---------I 480
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T G + +Q + + + LN AK ++ + +
Sbjct: 481 LGDEDHLGDMDFKVAGTREG-VTALQMDIKIEGITPEIMQIALNQAKSARMHILGVMEQA 539
Query: 238 I 238
I
Sbjct: 540 I 540
Score = 90.7 bits (223), Expect = 2e-16, Method: Composition-based stats.
Identities = 32/228 (14%), Positives = 70/228 (30%), Gaps = 27/228 (11%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----HGWITAEYGMLPR 68
++L +++ A + + DT + T ++ V + T G +P
Sbjct: 15 VTLETGAIARQATAAVMASMDDTTVFVTVVAKKDVKEGQDFFPLTVNYQERTYAAGKIPG 74
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
R GR I R+I R +R + Q++ +
Sbjct: 75 GFFKR------EGRPSEGETLIARLIDRPIRPLFPEGFFNEIQVVATVVSVNPQISPDLV 128
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+ GA A G + A G + +++ E +D
Sbjct: 129 AMIGASAA-------------LTLSGVPFNGPIGAARVGFIDNQFVLNPTMAEQKQSRLD 175
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
T ++ V+ A+ +++ A + + +++ K+
Sbjct: 176 LVVAGT-DKAVLMVESEADI--LTEEQMLAAVVFGHQQQQVVVEAIKE 220
>gi|332295429|ref|YP_004437352.1| Polyribonucleotide nucleotidyltransferase [Thermodesulfobium
narugense DSM 14796]
gi|332178532|gb|AEE14221.1| Polyribonucleotide nucleotidyltransferase [Thermodesulfobium
narugense DSM 14796]
Length = 721
Score = 144 bits (364), Expect = 8e-33, Method: Composition-based stats.
Identities = 45/245 (18%), Positives = 85/245 (34%), Gaps = 21/245 (8%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKH----- 56
R+ GR +++R IS+ + A GS L G T L+ ATL + I +T +
Sbjct: 320 RVDGRSLDEIRPISIQVGLLPRAHGSALFTRGQTQALSIATLGTQEDSQIIDTLYQSSNE 379
Query: 57 --GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIII 114
Y S G R+ G +AL V+ + I +
Sbjct: 380 IRKRYMHHYNFPGFSVGEARPSRGPGRREIGHGAL----AEKALLPVLPKESDFPYTIRV 435
Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPI 174
++++++G + A+ G+ ++L D + + + + I
Sbjct: 436 VSEILESNGSSSMASACGSSLSLMDAGVPISKHVGGIAMGLIYENEEIIILSD------- 488
Query: 175 VDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
+ ED+ D+D T G + +Q + D + A + +I+
Sbjct: 489 --ITGLEDAIGDMDFKVTGTIDG-VSALQLDVKVPGIPIDALSKAIKKAYEGRKSIIEKM 545
Query: 235 KDVIS 239
IS
Sbjct: 546 NQAIS 550
Score = 105 bits (261), Expect = 6e-21, Method: Composition-based stats.
Identities = 47/231 (20%), Positives = 81/231 (35%), Gaps = 27/231 (11%)
Query: 14 ISLTRRV-SKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT----KHGWITAEYGMLPR 68
I++ + +K A GS V+ GDT + + AT+ ++ I G P
Sbjct: 17 INIETGLLAKQANGSVTVRSGDTIVFSAATMSKEARSDIDFMPLVVDFDEKMYAAGKFPG 76
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
R GR R+ R+I R++R + I I D
Sbjct: 77 GFFKR------EGRPSERAILYSRIIDRSIRPLFPKGLRNDVCISSFPLSIDNDFPVDVL 130
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
+I + AL G V A+ G + I++ + D+D
Sbjct: 131 SIIASSAALC-------------ISDIPFDGPVGAVRVGEIDKKFILNPTIDQIEKSDID 177
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
V +I+ ++GS +D ++N A I + +QK++IS
Sbjct: 178 IVIVG-KEDNILMIEGS--FNEIPEDKIIEIINYALPAITKICDIQKELIS 225
>gi|146321779|ref|YP_001201490.1| polynucleotide phosphorylase/polyadenylase [Streptococcus suis
98HAH33]
gi|145692585|gb|ABP93090.1| Polyribonucleotide nucleotidyltransferase (polynucleotide
phosphorylase) [Streptococcus suis 98HAH33]
Length = 791
Score = 144 bits (364), Expect = 8e-33, Method: Composition-based stats.
Identities = 43/244 (17%), Positives = 82/244 (33%), Gaps = 18/244 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56
+R GR+ +++R + GS L G T L+ T E ++ + +
Sbjct: 369 VRPDGRRVDEIRPLDAEVDFLPNVHGSGLFTRGQTQALSVLTLAPMGETQIIDGLDDEYK 428
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y S G+ + A R+ G RAL V+ I +
Sbjct: 429 KRFLHHYNFPQYSVGSTGRYGAPGRREIGHGALG----ERALEQVLPSLEDFPYAIRLVA 484
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V++++G + A+IT +AL ++ + + + D
Sbjct: 485 EVLESNGSSSQASITAGTLALMAGGVPIKAPVAGIAMGLISD---------GTNYTVLTD 535
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T G I +Q + + L AK +++ + +
Sbjct: 536 IQGLEDHFGDMDFKVAGTRDG-ITALQMDIKIDGITPQILEEALAQAKKARFEILDVIEA 594
Query: 237 VISN 240
I
Sbjct: 595 TIPE 598
Score = 104 bits (258), Expect = 1e-20, Method: Composition-based stats.
Identities = 41/231 (17%), Positives = 81/231 (35%), Gaps = 26/231 (11%)
Query: 13 EISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKV---PMWIRNTKHGWITAEYGMLPR 68
++ + V+K A G+ +V++GD+ +LT A + +K+ + + G P
Sbjct: 66 KLVVETGQVAKQANGAVVVRYGDSTVLTAAVMSKKMATGDFFPLQVNYEEKMYAAGKFPG 125
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
R GR + R+I R +R + Q+I D A
Sbjct: 126 GWMKR------EGRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDPDASAPMA 179
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+ G+ +A G +A + G + G I++ D + ++
Sbjct: 180 AMFGSSLA-------------LAISDIPFNGPIAGVQVGYVNGELIINPDQAQQEASLLE 226
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
I V+ A+ S++ L I +L+ Q +++
Sbjct: 227 LTVAGNKD-AINMVESGAKE--LSEEVMLEALLKGHAAIQELLDFQNQIVA 274
>gi|145628545|ref|ZP_01784345.1| polyribonucleotide nucleotidyltransferase [Haemophilus influenzae
22.1-21]
gi|145639858|ref|ZP_01795459.1| polyribonucleotide nucleotidyltransferase [Haemophilus influenzae
PittII]
gi|144979015|gb|EDJ88701.1| polyribonucleotide nucleotidyltransferase [Haemophilus influenzae
22.1-21]
gi|145271076|gb|EDK10992.1| polyribonucleotide nucleotidyltransferase [Haemophilus influenzae
PittII]
gi|301168898|emb|CBW28492.1| polynucleotide phosphorylase/polyadenylase [Haemophilus influenzae
10810]
gi|309750352|gb|ADO80336.1| Polynucleotide phosphorylase [Haemophilus influenzae R2866]
Length = 709
Score = 144 bits (364), Expect = 8e-33, Method: Composition-based stats.
Identities = 42/241 (17%), Positives = 87/241 (36%), Gaps = 18/241 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR + +R + + V GS + G+T L ATL + ++ + +
Sbjct: 314 RIDGRTVDTVRALDICTGVLPRTHGSAIFTRGETQALAVATLGTERDAQIIDELTGERQD 373
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + R+ G + R + +V+ A + + +
Sbjct: 374 HFLFHYNFPPYSVGETGMIGSPKRREIGHGRL----AKRGVAAVMPSLAEFPYVVRVVSE 429
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ GA +AL D ++ + V + + +
Sbjct: 430 ITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEEEKFVVLSD---------I 480
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T G + +Q + + + LN AK ++ + +
Sbjct: 481 LGDEDHLGDMDFKVAGTREG-VTALQMDIKIEGITPEIMQIALNQAKSARMHILGVMEQA 539
Query: 238 I 238
I
Sbjct: 540 I 540
Score = 91.8 bits (226), Expect = 8e-17, Method: Composition-based stats.
Identities = 33/228 (14%), Positives = 70/228 (30%), Gaps = 27/228 (11%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----HGWITAEYGMLPR 68
++L +++ A + + DT + T ++ V + T G +P
Sbjct: 15 VTLETGAIARQATAAVMASMDDTTVFVTVVAKKDVKEGQDFFPLTVNYQERTYAAGKIPG 74
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
R GR I R+I R +R + Q++ +
Sbjct: 75 GFFKR------EGRPSEGETLIARLIDRPIRPLFPEGFFNEIQVVATVVSVNPQISPDLV 128
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+ GA A G + A G + +++ E +D
Sbjct: 129 AMIGASAA-------------LTLSGVPFNGPIGAARVGFIDNQFVLNPTMAEQKQSRLD 175
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
T ++ V+ A+ +++ A + + +I+ K+
Sbjct: 176 LVVAGT-DKAVLMVESEADI--LTEEQMLAAVVFGHQQQQVVIEAIKE 220
>gi|148827370|ref|YP_001292123.1| polynucleotide phosphorylase/polyadenylase [Haemophilus influenzae
PittGG]
gi|187610273|sp|A5UG34|PNP_HAEIG RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|148718612|gb|ABQ99739.1| polynucleotide phosphorylase [Haemophilus influenzae PittGG]
Length = 709
Score = 144 bits (364), Expect = 8e-33, Method: Composition-based stats.
Identities = 42/241 (17%), Positives = 87/241 (36%), Gaps = 18/241 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR + +R + + V GS + G+T L ATL + ++ + +
Sbjct: 314 RIDGRTVDTVRALDICTGVLPRTHGSAIFTRGETQALAVATLGTERDAQIIDELTGERQD 373
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + R+ G + R + +V+ A + + +
Sbjct: 374 HFLFHYNFPPYSVGETGMIGSPKRREIGHGRL----AKRGVAAVMPSLAEFPYVVRVVSE 429
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ GA +AL D ++ + V + + +
Sbjct: 430 ITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEEEKFVVLSD---------I 480
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T G + +Q + + + LN AK ++ + +
Sbjct: 481 LGDEDHLGDMDFKVAGTREG-VTALQMDIKIEGITPEIMQIALNQAKSARMHILGVMEQA 539
Query: 238 I 238
I
Sbjct: 540 I 540
Score = 92.6 bits (228), Expect = 4e-17, Method: Composition-based stats.
Identities = 33/228 (14%), Positives = 71/228 (31%), Gaps = 27/228 (11%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----HGWITAEYGMLPR 68
++L +++ A + + DT + T ++ V + T G +P
Sbjct: 15 VTLETGAIARQATAAVMASMDDTTVFVTVVAKKDVKEGQDFFPLTVNYQERTYAAGKIPG 74
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
R GR I R+I R +R + Q++ +
Sbjct: 75 GFFKR------EGRPSEGETLIARLIDRPIRPLFPEGFFNEIQVVATVVSVNPQISPDLV 128
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+ GA A G + A+ G + +++ E +D
Sbjct: 129 AMIGASAA-------------LTLSGVPFNGPIGAVRVGFIDNQFVLNPTMAEQKQSRLD 175
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
T ++ V+ A+ +++ A + + +I+ K+
Sbjct: 176 LVVAGT-DKAVLMVESEADI--LTEEQMLAAVVFGHQQQQVVIEAIKE 220
>gi|325697461|gb|EGD39347.1| polyribonucleotide nucleotidyltransferase [Streptococcus sanguinis
SK160]
Length = 733
Score = 144 bits (363), Expect = 8e-33, Method: Composition-based stats.
Identities = 43/242 (17%), Positives = 80/242 (33%), Gaps = 18/242 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56
+R GR+ +++R + GS L G T L+ T E ++ +
Sbjct: 317 VRPDGRKVDEIRPLDAEVDYLPRVHGSGLFTRGQTQALSVLTLAPMGETQIVDGLDPEYK 376
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y S G + A R+ G RAL V+ I +
Sbjct: 377 KRFMHHYNFPQYSVGETGRYGAPGRREIGHGALG----ERALEQVLPSLEEFPYAIRLVA 432
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V++++G + A+I +AL ++ + + + D
Sbjct: 433 EVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISD---------GSNYTVLTD 483
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T G I +Q + + + L AK +++ L +
Sbjct: 484 IQGLEDHFGDMDFKVAGTREG-ITALQMDIKIEGITAEILTEALAQAKKARFEILDLIEA 542
Query: 237 VI 238
I
Sbjct: 543 TI 544
Score = 116 bits (290), Expect = 3e-24, Method: Composition-based stats.
Identities = 45/232 (19%), Positives = 87/232 (37%), Gaps = 26/232 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKV---PMWIRNTKHGWITAEYGMLP 67
RE+ + V+K A GS +V++G++ +LT AT+ +K+ + + G P
Sbjct: 13 RELVVETGQVAKQANGSAVVRYGESTVLTAATMSKKMATGDFFPLQVNYEEKMYAAGKYP 72
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R GR + R+I R +R + Q+I D +
Sbjct: 73 GGFNKR------EGRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDEDASPQM 126
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
AA+ G+ +A G +A + G + G I++ + +
Sbjct: 127 AAMFGSSLA-------------LSISDIPFNGPIAGVQVGYVDGEFIINPSKEQKEVSLL 173
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
+ T I V+ A+ S+D L + + +LI Q+++++
Sbjct: 174 ELTVAGTKD-AINMVESGAKE--LSEDVMLEALLKGHEAVKELIAFQEEIVA 222
>gi|324989722|gb|EGC21665.1| polyribonucleotide nucleotidyltransferase [Streptococcus sanguinis
SK353]
Length = 733
Score = 144 bits (363), Expect = 8e-33, Method: Composition-based stats.
Identities = 43/242 (17%), Positives = 80/242 (33%), Gaps = 18/242 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56
+R GR+ +++R + GS L G T L+ T E ++ +
Sbjct: 317 VRPDGRKVDEIRPLDAEVDYLPRVHGSGLFTRGQTQALSVLTLAPMGETQIVDGLDPEYK 376
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y S G + A R+ G RAL V+ I +
Sbjct: 377 KRFMHHYNFPQYSVGETGRYGAPGRREIGHGALG----ERALEQVLPSLEEFPYAIRLVA 432
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V++++G + A+I +AL ++ + + + D
Sbjct: 433 EVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISD---------GSNYTVLTD 483
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T G I +Q + + + L AK +++ L +
Sbjct: 484 IQGLEDHFGDMDFKVAGTREG-ITALQMDIKIEGITAEILTEALAQAKKARFEILDLIEA 542
Query: 237 VI 238
I
Sbjct: 543 TI 544
Score = 115 bits (288), Expect = 5e-24, Method: Composition-based stats.
Identities = 45/231 (19%), Positives = 87/231 (37%), Gaps = 26/231 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKV---PMWIRNTKHGWITAEYGMLP 67
RE+ + V+K A GS +V++G++ +LT AT+ +K+ + + G P
Sbjct: 13 RELVVETGQVAKQANGSAVVRYGESTVLTAATMSKKMATGDFFPLQVNYEEKMYAAGKYP 72
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R GR + R+I R +R + + Q+I D +
Sbjct: 73 GGFNKR------EGRPSTDATLTARLIDRPIRPMFEEGFRNEVQVINTVLSYDEDASPQM 126
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
AA+ G+ +A G +A + G + G I++ + +
Sbjct: 127 AAMFGSSLA-------------LSISDIPFNGPIAGVQVGYVDGEFIINPSKEQKEVSLL 173
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
+ T I V+ A+ S+D L + + +LI Q++++
Sbjct: 174 ELTVAGTKD-AINMVESGAKE--LSEDVMLEALLKGHEAVKELIAFQEEIV 221
>gi|145631098|ref|ZP_01786873.1| polyribonucleotide nucleotidyltransferase [Haemophilus influenzae
R3021]
gi|144983383|gb|EDJ90865.1| polyribonucleotide nucleotidyltransferase [Haemophilus influenzae
R3021]
Length = 709
Score = 144 bits (363), Expect = 8e-33, Method: Composition-based stats.
Identities = 42/241 (17%), Positives = 87/241 (36%), Gaps = 18/241 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR + +R + + V GS + G+T L ATL + ++ + +
Sbjct: 314 RIDGRTVDTVRALDICTGVLPRTHGSAIFTRGETQALAVATLGTERDAQIIDELTGERQD 373
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + R+ G + R + +V+ A + + +
Sbjct: 374 HFLFHYNFPPYSVGETGMIGSPKRREIGHGRL----AKRGVAAVMPSLAEFPYVVRVVSE 429
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ GA +AL D ++ + V + + +
Sbjct: 430 ITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEEEKFVVLSD---------I 480
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T G + +Q + + + LN AK ++ + +
Sbjct: 481 LGDEDHLGDMDFKVAGTREG-VTALQMDIKIEGITPEIMQIALNQAKSARMHILGVMEQA 539
Query: 238 I 238
I
Sbjct: 540 I 540
Score = 91.8 bits (226), Expect = 8e-17, Method: Composition-based stats.
Identities = 33/228 (14%), Positives = 70/228 (30%), Gaps = 27/228 (11%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----HGWITAEYGMLPR 68
++L +++ A + + DT + T ++ V + T G +P
Sbjct: 15 VTLETGAIARQATAAVMASMDDTTVFVTVVAKKDVKEGQDFFPLTVNYQERTYAAGKIPG 74
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
R GR I R+I R +R + Q++ +
Sbjct: 75 GFFKR------EGRPSEGETLIARLIDRPIRPLFPEGFFNEIQVVATVVSVNPQISPDLV 128
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+ GA A G + A G + +++ E +D
Sbjct: 129 AMIGASAA-------------LTLSGVPFNGPIGAARVGFIDNQFVLNPTMAEQKQSRLD 175
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
T ++ V+ A+ +++ A + + +I+ K+
Sbjct: 176 LVVAGT-DKAVLMVESEADI--LTEEQMLAAVVFGHQQQQVVIEAIKE 220
>gi|254495070|ref|ZP_05107994.1| polyribonucleotide nucleotidyltransferase [Polaribacter sp. MED152]
gi|85819420|gb|EAQ40577.1| polyribonucleotide nucleotidyltransferase [Polaribacter sp. MED152]
Length = 746
Score = 144 bits (363), Expect = 8e-33, Method: Composition-based stats.
Identities = 48/243 (19%), Positives = 80/243 (32%), Gaps = 20/243 (8%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
+RL GR+ +R I GS + G+T L T TL E
Sbjct: 317 LRLDGRKTTDIRPIWCEVDYLPSTHGSSIFTRGETQALATVTLGTSREANQIDMPSYEGE 376
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P STG S R+ G RAL+ ++ + +
Sbjct: 377 ETFYLHYNFPPFSTGEARPIRGTSRREVGHGNL----AQRALKGMIPAD--CPYTVRVVS 430
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V++++G + A + +AL D ++ + + + G A+
Sbjct: 431 EVLESNGSSSMATVCSGTMALMDAGVQLKKPVSGIAMGLISDGTNHAVLSD--------- 481
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T G I Q + S + L A+D ++ D
Sbjct: 482 ILGDEDHLGDMDFKVTGTADG-ITACQMDIKIKGLSYEILVKALKQARDGRLHILGKLTD 540
Query: 237 VIS 239
I
Sbjct: 541 TIE 543
Score = 103 bits (257), Expect = 2e-20, Method: Composition-based stats.
Identities = 36/232 (15%), Positives = 70/232 (30%), Gaps = 26/232 (11%)
Query: 7 QENQMREISLTRR-VSKYAEGSCLVKFGDTHLLTTATL---EEKVPMWIRNTKHGWITAE 62
R ISL ++K A GS +V+ G LL T ++ V + A
Sbjct: 11 DLGDGRTISLETGKLAKQAHGSVVVQSGKCMLLCTVVSNYEQKDVDFLPLTVDYREKFAA 70
Query: 63 YGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQAD 122
G P R R R++ R LR + Q
Sbjct: 71 AGRYPGGFFKR------EARPSDGEVLTMRLVDRVLRPLFPKDYHSETQ----------- 113
Query: 123 GGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGED 182
++ + D + + + + ++ + G + G I++ +
Sbjct: 114 --VMIQMMSHDDDVMPDAMAGLAASAAIQLSDLPFECPISEVRVGRVNGEFIINPTRAQL 171
Query: 183 STIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
+ D+D + ++ V+ E S++ + A + I Q
Sbjct: 172 AEADIDMMI-GASADSVMMVE--GEMDECSEEEMAEAIKFAHEAIKVQCAAQ 220
>gi|309972624|gb|ADO95825.1| Polynucleotide phosphorylase [Haemophilus influenzae R2846]
Length = 709
Score = 144 bits (363), Expect = 8e-33, Method: Composition-based stats.
Identities = 42/241 (17%), Positives = 87/241 (36%), Gaps = 18/241 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR + +R + + V GS + G+T L ATL + ++ + +
Sbjct: 314 RIDGRTVDTVRALDICTGVLPRTHGSAIFTRGETQALAVATLGTERDAQIIDELTGERQD 373
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + R+ G + R + +V+ A + + +
Sbjct: 374 HFLFHYNFPPYSVGETGMIGSPKRREIGHGRL----AKRGVAAVMPSLAEFPYVVRVVSE 429
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ GA +AL D ++ + V + + +
Sbjct: 430 ITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEEEKFVVLSD---------I 480
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T G + +Q + + + LN AK ++ + +
Sbjct: 481 LGDEDHLGDMDFKVAGTREG-VTALQMDIKIEGITPEIMQIALNQAKSARMHILGVMEQA 539
Query: 238 I 238
I
Sbjct: 540 I 540
Score = 92.2 bits (227), Expect = 6e-17, Method: Composition-based stats.
Identities = 33/228 (14%), Positives = 70/228 (30%), Gaps = 27/228 (11%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----HGWITAEYGMLPR 68
++L +++ A + + DT + T ++ V + T G +P
Sbjct: 15 VTLETGAIARQATAAVMASMDDTTVFVTVVAKKDVKEGQDFFPLTVNYQERTYAAGKIPG 74
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
R GR I R+I R +R + Q++ +
Sbjct: 75 GFFKR------EGRPSEGETLIARLIDRPIRPLFPEGFFNEIQVVATVVSVNPQISPDLV 128
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+ GA A G + A G + +++ E +D
Sbjct: 129 AMIGASAA-------------LTLSGVPFNGPIGAARVGFIDNQFVLNPTMAEQKQSRLD 175
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
T ++ V+ +E +++ A + + +I+ K+
Sbjct: 176 LVVAGT-DKAVLMVE--SEADVLTEEQMLAAVVFGHQQQQVVIEAIKE 220
>gi|212703635|ref|ZP_03311763.1| hypothetical protein DESPIG_01680 [Desulfovibrio piger ATCC 29098]
gi|212672930|gb|EEB33413.1| hypothetical protein DESPIG_01680 [Desulfovibrio piger ATCC 29098]
Length = 750
Score = 144 bits (363), Expect = 8e-33, Method: Composition-based stats.
Identities = 42/244 (17%), Positives = 83/244 (34%), Gaps = 19/244 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
+R+ GR +R I + V A GS + + G+T L TL +E+ +
Sbjct: 322 VRIDGRDTKTVRPIQIQTSVLPRAHGSAIFRRGETKSLVVTTLGSSTDEQRMGSLSGDVT 381
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P S G R R + ++LR V+ A + +
Sbjct: 382 KRFMLHYNFPPFSVGEVKP-----VRVSRREIGHGALAEKSLRPVMPADADFPFTVRVVS 436
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+ ++++G + AA+ G ++L D + + + +G +
Sbjct: 437 ETVESNGSSSMAAVCGGCLSLMDAGIPISAPVAGVAMGLIKEGDKFIVLTD--------- 487
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED+ D+D T G + VQ + + D + A + ++
Sbjct: 488 ILGDEDALGDMDFKIAGTAEG-VTGVQMDIKITGLTTDIMRQAMQQAHEGRLHILAEMAK 546
Query: 237 VISN 240
+
Sbjct: 547 ALPE 550
Score = 95.3 bits (235), Expect = 7e-18, Method: Composition-based stats.
Identities = 44/228 (19%), Positives = 76/228 (33%), Gaps = 25/228 (10%)
Query: 13 EISLTRR-VSKYAEGSCLVKFGDTHLLTTAT---LEEKVPMWIRNTKHGWITAEYGMLPR 68
EI ++ A G+ V+ G T +L T LE + ++ G +P
Sbjct: 19 EIIFETGRLANQAHGAVWVQCGGTVVLVTVCSQPLEFDKGFFPLTVEYSEKMYAAGRIPG 78
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
S R GR R + R+I R +R + Q++ + +
Sbjct: 79 SFFRR-----EIGRPSERETLVSRLIDRPIRPLFPKGLNEDVQVLASVISADQENESDVL 133
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+TGA A+ +G VA G + G +++ + E D++
Sbjct: 134 ALTGASAAVM-------------LSPLPFEGPVAGGRIGRIDGQFVLNPTFEEQERSDLN 180
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
F + + V+ E +D L + I LI Q
Sbjct: 181 IVFAASRD-ALTMVE--GEATFVPEDVIIDALEWGRKEIQPLIDAQLK 225
>gi|187918659|ref|YP_001884225.1| polynucleotide phosphorylase/polyadenylase [Borrelia hermsii DAH]
gi|119861507|gb|AAX17302.1| polyribonucleotide nucleotidyltransferase [Borrelia hermsii DAH]
Length = 727
Score = 144 bits (363), Expect = 8e-33, Method: Composition-based stats.
Identities = 44/244 (18%), Positives = 86/244 (35%), Gaps = 19/244 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
+R GR Q+R+I + K GS L G+T L TL +E++ I K
Sbjct: 325 LRTDGRTSTQIRDIVAEVDLLKRTHGSSLFTRGETQALAVTTLGTSIDEQIMDDIDGDKR 384
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P S G + R+ G R+L +++ I +
Sbjct: 385 LNFMLHYNFPPFSVGETGRLMTGR-REVGHGHL----AQRSLEAMLPKKDDFPYTIRVVS 439
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
++++++G + A + ++L +++ + + G +
Sbjct: 440 EILESNGSSSMATVCSGSMSLMAAGVPVKEQVAGIAMGLISDGDKYVVLSD--------- 490
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T +G I Q + + ++ L A+ ++ +
Sbjct: 491 ILGEEDHLGDMDFKVAGTKNG-ITGFQMDIKISNVTKQLMKDALEQARIGRMHILSIMDS 549
Query: 237 VISN 240
VIS
Sbjct: 550 VISR 553
Score = 102 bits (255), Expect = 3e-20, Method: Composition-based stats.
Identities = 43/240 (17%), Positives = 83/240 (34%), Gaps = 32/240 (13%)
Query: 5 GRQENQMREISLTRRV-SKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----HGWI 59
GR+ ++ L + +K A G+ L +G + +L T + V + +
Sbjct: 20 GRE-----DLILETGLLAKQANGAVLATYGGSTVLATVCCSDSVRENLDFVPLSVEYNEK 74
Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119
G +P R G+ + + R+I R +R + D Q++
Sbjct: 75 YYAAGKIPGGFIKR------EGKPKDKEVLVSRLIDRPMRPLFDKRFGREIQVVPTTLST 128
Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179
+ A+ A+ G +AA+ L IV+ +
Sbjct: 129 DQMNPPDIVGMNAAFAAVF-------------LSDIPFNGPIAAVRLAYLNNEFIVNPSF 175
Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
E +D + G I V+G A S++ + ++ A + I + LQK+ +S
Sbjct: 176 DEIQDSILDIVVAGSLDG-ITMVEGGANE--VSEEVLLSAIDKAYEYIKQICNLQKEFVS 232
>gi|221632459|ref|YP_002521680.1| ribonuclease PH [Thermomicrobium roseum DSM 5159]
gi|221156234|gb|ACM05361.1| ribonuclease PH [Thermomicrobium roseum DSM 5159]
Length = 243
Score = 144 bits (363), Expect = 8e-33, Method: Composition-based stats.
Identities = 113/235 (48%), Positives = 154/235 (65%), Gaps = 4/235 (1%)
Query: 5 GRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYG 64
GR +++R + + YAEGS L+ G+TH+L AT+EE+VP ++ + GWITAEYG
Sbjct: 11 GRANDELRPVEIVPHYIPYAEGSALIMLGNTHVLCAATVEERVPSFLVGSGQGWITAEYG 70
Query: 65 MLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGG 124
MLPRS R+ R GGR+ EIQR+IGR+LR+ VDL+ALG R IIIDCDV++ADGG
Sbjct: 71 MLPRSGRERIPR--ERMGPGGRTAEIQRLIGRSLRAAVDLAALGERTIIIDCDVLRADGG 128
Query: 125 TRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDST 184
TRTAAITG WVALH L + S + VAA+S G++ G P +DL+Y EDS
Sbjct: 129 TRTAAITGGWVALH--LALQHLLAEGRIESLPVVRQVAAVSVGVVAGQPRLDLEYAEDSC 186
Query: 185 IDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
+VD N VMTD G VE+QG+AE F ++ +L LA+ I++L+ +Q+ +
Sbjct: 187 AEVDMNIVMTDRGEFVELQGTAEGQPFGREVLEQLLRLAERGISELMLVQRRALG 241
>gi|15807057|ref|NP_295786.1| polynucleotide phosphorylase/polyadenylase [Deinococcus radiodurans
R1]
gi|6459851|gb|AAF11608.1|AE002042_3 polynucleotide phosphorylase [Deinococcus radiodurans R1]
Length = 810
Score = 144 bits (363), Expect = 8e-33, Method: Composition-based stats.
Identities = 46/243 (18%), Positives = 88/243 (36%), Gaps = 18/243 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKH---- 56
+R GR +R I + R A GS + G+T +L TL + + +
Sbjct: 349 LRADGRDSKTVRPIWIEARPLPTAHGSAVFTRGETQVLGVTTLGTERDEILIDDLTAESG 408
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P STG + S R+ G RA+R+V+ I +
Sbjct: 409 DKFLLHYNFPPYSTGEVKRMGGQSRREIGHGNL----AKRAIRAVLPSFEEFPYVIRVVG 464
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
DV++++G + + ++L D ++ + V++G + D
Sbjct: 465 DVLESNGSSSMGTVCAGTLSLMDAGVPLKAPVAGVAMGLVMEGD---------NYRVLTD 515
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED+ D+D T G + +Q + + L AK+ ++ +
Sbjct: 516 ILGLEDALGDMDFKVCGTAEG-VTALQMDIKVGGITPQIMREALAQAKEGRLHILGKMAE 574
Query: 237 VIS 239
V++
Sbjct: 575 VLA 577
Score = 93.8 bits (231), Expect = 2e-17, Method: Composition-based stats.
Identities = 46/229 (20%), Positives = 78/229 (34%), Gaps = 26/229 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEE---KVPMWIRNTKHGWITAEYGMLP 67
RE+S+ ++K GS V++GDT LL TA + K+ + G +P
Sbjct: 44 RELSIETGKLAKLVSGSVTVRYGDTLLLVTAQASDTQSKLDFLPLTVEFEERHYAVGKIP 103
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
S R GR G ++ R+ R +R + Q+II
Sbjct: 104 GSFQRR------EGRPGEKAILSARITDRQIRPLFPKGYRHETQVIITVLSADGQNAPDV 157
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
GA A G A + G + G +V+ + + +
Sbjct: 158 LGPIGAAAA-------------LSISDIPWAGPTACVRVGQIDGQYVVNPTTEQLTRSRM 204
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
D T ++ V+ A+ T S+D + A + +I L +
Sbjct: 205 DLVVAGTRE-AVMMVECGAQ--TVSEDDLVGAIEFAHAEMQGVIALIEQ 250
>gi|328957265|ref|YP_004374651.1| polynucleotide phosphorylase/polyadenylase [Carnobacterium sp.
17-4]
gi|328673589|gb|AEB29635.1| polynucleotide phosphorylase/polyadenylase [Carnobacterium sp.
17-4]
Length = 717
Score = 144 bits (363), Expect = 9e-33, Method: Composition-based stats.
Identities = 46/244 (18%), Positives = 84/244 (34%), Gaps = 18/244 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56
+R GR+ +++R ++ + A GS L G T L+ AT E ++ +
Sbjct: 333 IRPDGRKIDEIRSLASEIGLLPRAHGSGLFTRGQTQALSIATLAPLGEHQIIDGLGIENS 392
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y S G+ R+ G RAL V+ I +
Sbjct: 393 KRFIHHYNFPQYSVGSTGPSRGPGRREIGHGALG----ERALAQVIPSEEDFPYMIRLVA 448
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V++++G + A+I +AL D ++ + V +G +
Sbjct: 449 EVLESNGSSSQASICAGTLALMDAGVPIKAPVAGIAMGLVKEGENYTVLTD--------- 499
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T G I +Q + +Q L AK +++
Sbjct: 500 IQGLEDHLGDMDFKVAGTSKG-ITALQMDIKIEGITQQILEEALTQAKKARMEILDELIS 558
Query: 237 VISN 240
I+
Sbjct: 559 TIAE 562
Score = 111 bits (276), Expect = 1e-22, Method: Composition-based stats.
Identities = 39/232 (16%), Positives = 85/232 (36%), Gaps = 26/232 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEK---VPMWIRNTKHGWITAEYGMLP 67
R + + ++K A G+ L+++ DT +L+ A +K V + + G +P
Sbjct: 29 RTLEIEVGQLAKQANGAALIRYNDTVVLSAAVASKKAKDVDFFPLTVNYDEKMYSVGKIP 88
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R R + R+I R +R + QI + +
Sbjct: 89 GGFIKR------EARPSEAATLTARLIDRPIRPMFAEGFRNEVQITNTVMSVDQNCSPAF 142
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
+A+ G+ ++ G +A++ G + G I++ +++ D+
Sbjct: 143 SAMFGSSLS-------------LAISDIPFNGPIASVDVGRVDGEYIINPTLEQEALSDI 189
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
T I V+ A A S++ L + I +L+ Q+++++
Sbjct: 190 HLTVAGTKD-AINMVESGA--AEVSEEDMLGALMFGHEAIQELVAFQEEIVA 238
>gi|317490521|ref|ZP_07948999.1| polyribonucleotide nucleotidyltransferase [Eggerthella sp.
1_3_56FAA]
gi|316910372|gb|EFV32003.1| polyribonucleotide nucleotidyltransferase [Eggerthella sp.
1_3_56FAA]
Length = 741
Score = 144 bits (363), Expect = 9e-33, Method: Composition-based stats.
Identities = 49/242 (20%), Positives = 86/242 (35%), Gaps = 18/242 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R GR+ +R + + GS L + G T L+ TL E + I +
Sbjct: 315 RADGRRPEDIRPLYIVPGYLPRVHGSGLFQRGQTQALSVCTLGMLNEWQRLDTIDPAEGK 374
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
+Y P TG + A R+ G RAL V+ I + +
Sbjct: 375 RYMHQYNFPPYCTGETGRMGAPKRREIGHGAL----AERALIPVLPSEDEFPYAIRVVSE 430
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
V++++G + A+ G+ +AL D ++ + + + +G I +
Sbjct: 431 VLESNGSSSMASTCGSTLALMDAGVPIKAPVSGIAMGLIKEGDDVVILSD---------I 481
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T G I +Q + S D L A + A ++ +
Sbjct: 482 QGIEDFLGDMDFKVCGTAKG-ITALQMDNKARGLSVDILARALKQASEGRAYILDAMLET 540
Query: 238 IS 239
I+
Sbjct: 541 IA 542
Score = 92.6 bits (228), Expect = 4e-17, Method: Composition-based stats.
Identities = 42/228 (18%), Positives = 77/228 (33%), Gaps = 24/228 (10%)
Query: 15 SLTRR-VSKYAEGSCLVKFGDTHLLTTATL---EEKVPMWIRNTKHGWITAEYGMLPRST 70
L ++K A GS +V GDT +L TA + E+ + G +P
Sbjct: 16 RLETGELAKQATGSVVVTQGDTTVLVTAVISKEEKDYDFFPLTVDFIEKMYAVGRIPGGY 75
Query: 71 GNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAI 130
R R + RM+ R +R ++ V+ + T +
Sbjct: 76 LKR------EARPSDKGTLTARMVDRPIRPGFADGFKREVHVVCTTLVVDSINPPDTICV 129
Query: 131 TGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDAN 190
GA AL + + + I + G IV+ + E D++
Sbjct: 130 MGASAALMLGAAPFDGPAACVR-----------IGRDVETGEFIVNPTFEESENSDLELT 178
Query: 191 FVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
T +I V+ A+ S++ A + ++ IA + Q+ +
Sbjct: 179 IAGTAD-YISMVEAGADE--ISEEDMLAAMTFGQEAIAAFCEAQQRFL 223
>gi|17227565|ref|NP_484113.1| ribonuclease PH [Nostoc sp. PCC 7120]
gi|21759403|sp|Q8Z0M2|RNPH_ANASP RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|17135047|dbj|BAB77593.1| ribonuclease PH [Nostoc sp. PCC 7120]
Length = 247
Score = 144 bits (363), Expect = 9e-33, Method: Composition-based stats.
Identities = 89/225 (39%), Positives = 134/225 (59%), Gaps = 4/225 (1%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R GR+ ++R I+ + +++A GS L G+T +L T ++ E VP ++ + GW+TA
Sbjct: 5 RPDGRKPYELRPINFHTKFTRFAPGSVLTICGETKVLCTVSVAESVPKFLTGSGKGWLTA 64
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
EY MLP +T R E + GR+QEIQR+IGR+LR+ +D ALG R + +D DV+QA
Sbjct: 65 EYRMLPSATQQR--HERELLKLSGRTQEIQRLIGRSLRAALDFEALGERTLTVDADVLQA 122
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
D GTRTAAITG +VAL + + + + + +AA+S G+L +DL+Y E
Sbjct: 123 DAGTRTAAITGGFVALAEAISQLLQRGVLERSPLCGQ--IAAVSVGLLEQEAYLDLNYIE 180
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226
D VD N VM + I+EVQG+AE +FS+ +L+ A+
Sbjct: 181 DVAATVDFNVVMNKNLGIIEVQGTAEEGSFSRTQLNQLLDCAETG 225
>gi|329295924|ref|ZP_08253260.1| polynucleotide phosphorylase/polyadenylase [Plautia stali symbiont]
Length = 710
Score = 144 bits (363), Expect = 9e-33, Method: Composition-based stats.
Identities = 43/242 (17%), Positives = 89/242 (36%), Gaps = 18/242 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR+++ +R + + V GS L G+T L ATL + + + +
Sbjct: 315 RIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVAATLGTARDAQNLDELMGERTD 374
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + R+ G + R + +V+ + + +
Sbjct: 375 SFLFHYNFPPFSVGETGMVGSPKRREIGHGRL----AKRGVLAVMPKQDAFPYTVRVVSE 430
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ GA +AL D ++ + V + + +
Sbjct: 431 ITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEDEKFVVLSD---------I 481
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D + G I +Q + +++ LN AK ++ + +
Sbjct: 482 LGDEDHLGDMDFKVAGSREG-ITALQMDIKIEGITREIMQVALNQAKGARLHILSVMEQA 540
Query: 238 IS 239
IS
Sbjct: 541 IS 542
Score = 87.6 bits (215), Expect = 1e-15, Method: Composition-based stats.
Identities = 35/232 (15%), Positives = 73/232 (31%), Gaps = 27/232 (11%)
Query: 14 ISLTRRV-SKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----HGWITAEYGMLPR 68
++L + ++ A + +V DT + T ++K + T G +P
Sbjct: 16 VTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKAGQDFFPLTVNYQERTYAAGRIPG 75
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
S R GR I R+I R +R + + Q+I +
Sbjct: 76 SFFRR------EGRPSEGETLIARLIDRPVRPLFPEGFVNEVQVITTVVSVNPQVNPDIV 129
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+ GA A G + A G + +++ E +D
Sbjct: 130 AMIGASAA-------------LSLSGIPFNGPIGAARVGYINDQYVLNPTADEIKQSRLD 176
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
T + ++ +E ++D + D+ +I+ +++
Sbjct: 177 LVVAGTQNAVLI---VESEADILTEDQMLGAVVFGHDQQQVVIENINALVAE 225
>gi|291009326|ref|ZP_06567299.1| polynucleotide phosphorylase/polyadenylase [Saccharopolyspora
erythraea NRRL 2338]
Length = 747
Score = 144 bits (363), Expect = 9e-33, Method: Composition-based stats.
Identities = 43/244 (17%), Positives = 85/244 (34%), Gaps = 14/244 (5%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKH 56
+R+ GR +R +S V A GS L + G+T +L +TL E+ +
Sbjct: 344 VRIDGRGLTDIRSLSAEVGVIPRAHGSALFERGETQILGVSTLNMLRLEQTIDSLSPETT 403
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P STG + + R+ G RAL V+ +
Sbjct: 404 KRYMHHYNFPPYSTGETGRVGSPKRREIGHGAL----AERALIPVLPTREEFPYALRQVS 459
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+ + ++G T ++ + ++L + ++ + V G + D
Sbjct: 460 EALGSNGSTSMGSVCASTLSLLNAGVPLKAPVAGIAMGLVSDEID-----GKTHYVALTD 514
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED+ D+D T + +Q + + L A+D ++++ +
Sbjct: 515 ILGAEDAFGDMDFKVAGTKEF-VTALQLDTKLDGIPSEVLAQALGQARDARFTILEVMAE 573
Query: 237 VISN 240
I
Sbjct: 574 AIGK 577
Score = 74.5 bits (181), Expect = 1e-11, Method: Composition-based stats.
Identities = 42/239 (17%), Positives = 66/239 (27%), Gaps = 38/239 (15%)
Query: 12 REISLTRR-VSKYAEGSCLVKF-GDTHLLTTATLEEKVPMWIRNT----KHGWITAEYGM 65
R + ++K A GS + DT LL+ T ++ G
Sbjct: 23 RTVRFETGRLAKQAAGSVVAYLDDDTMLLSATTASKQPKEHFDFFPLTVDVEERMYAAGR 82
Query: 66 LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125
+P S R GR + R+I R LR Q+++ +
Sbjct: 83 IPGSFFRR------EGRPSTDAILTCRLIDRPLRPSFVDGLRNEVQVVVTVMSLDPQDPY 136
Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185
AI GA + G V ++ G + Y +
Sbjct: 137 DVLAINGASASTQ-------------LSGLPFSGPVGGTRMALIDGQWVAFPTYEQLERA 183
Query: 186 DVDANFVM---TDSGHIVEVQGSAERATF----------SQDHFFAMLNLAKDRIADLI 231
D D I+ V+ A T +++ A L AK I L
Sbjct: 184 VFDMVVAGRIVGDDVAIMMVEAEATEKTAGLVSAGAQAPTEEVVAAGLEAAKPFIRTLC 242
>gi|332851858|ref|ZP_08433761.1| polyribonucleotide nucleotidyltransferase [Acinetobacter baumannii
6013150]
gi|332867443|ref|ZP_08437603.1| polyribonucleotide nucleotidyltransferase [Acinetobacter baumannii
6013113]
gi|332873102|ref|ZP_08441059.1| polyribonucleotide nucleotidyltransferase [Acinetobacter baumannii
6014059]
gi|322506580|gb|ADX02034.1| Polyribonucleotide nucleotidyltransferase [Acinetobacter baumannii
1656-2]
gi|323516459|gb|ADX90840.1| polynucleotide phosphorylase/polyadenylase [Acinetobacter baumannii
TCDC-AB0715]
gi|332729643|gb|EGJ60979.1| polyribonucleotide nucleotidyltransferase [Acinetobacter baumannii
6013150]
gi|332733983|gb|EGJ65127.1| polyribonucleotide nucleotidyltransferase [Acinetobacter baumannii
6013113]
gi|332738614|gb|EGJ69484.1| polyribonucleotide nucleotidyltransferase [Acinetobacter baumannii
6014059]
Length = 695
Score = 144 bits (363), Expect = 9e-33, Method: Composition-based stats.
Identities = 48/239 (20%), Positives = 89/239 (37%), Gaps = 10/239 (4%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R+ GR +R + + V + A GS L G+T L T TL + +T G T
Sbjct: 315 RIDGRDTKTVRALDVQVGVLERAHGSALFTRGETQALVTTTLGNTRDALMVDTLAGTKTD 374
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
+ + V R R+ R +++V+ + I I D+ ++
Sbjct: 375 NFMLHYNFPAYSVGETGRESGPKRREIGHGRLARRGVQAVLPAADRFPYVIRIVSDITES 434
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
+G + A++ GA ++L D ++ + V +G A+ + E
Sbjct: 435 NGSSSMASVCGASLSLMDAGVPLKAPVAGIAMGLVKEGERFAVLSD---------ILGDE 485
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
D D+D + +G I +Q + +++ LN A ++ VIS
Sbjct: 486 DHLGDMDFKVAGSANG-ITALQMDIKIEGITEEIMEVALNQAFAGRMHILNEMNKVISR 543
Score = 68.3 bits (165), Expect = 8e-10, Method: Composition-based stats.
Identities = 37/228 (16%), Positives = 73/228 (32%), Gaps = 28/228 (12%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEE----KVPMWIRNTKHGWITAEYGMLPR 68
+ L V++ A + L+ G +L + + G +P
Sbjct: 16 VVLETGRVARQAN-TVLITMGGVTVLVAVVAAPTAKAGQDFFPLTVNYQEKQYAAGRIPG 74
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
G R GR I R+I R +R + Q+ A
Sbjct: 75 GYGKR------EGRASEAETLISRLIDRPIRPLFPEGYYNEIQVTATVVSSDKTMEADIA 128
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+ G AL +G + A G++ G +++ ++ + + D+D
Sbjct: 129 AMLGTSAALAIAGT-------------PFRGPIGAARVGLINGEYVLNPNFEQMAQSDLD 175
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
T+S ++ V+ A+ S+D + D + I+ +
Sbjct: 176 LVVAGTES-AVLMVESEAKE--LSEDQMLGAVLFGHDEMQIAIQAINE 220
>gi|323142160|ref|ZP_08076997.1| polyribonucleotide nucleotidyltransferase [Phascolarctobacterium
sp. YIT 12067]
gi|322413352|gb|EFY04234.1| polyribonucleotide nucleotidyltransferase [Phascolarctobacterium
sp. YIT 12067]
Length = 690
Score = 144 bits (363), Expect = 9e-33, Method: Composition-based stats.
Identities = 48/244 (19%), Positives = 89/244 (36%), Gaps = 18/244 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
+R GRQ +++R +S + GS L G T +L L E ++ + +
Sbjct: 305 IRPDGRQLDEVRPVSCEVGLLARPHGSSLFTRGQTQILNVLALAPLREAQILDGLGAEET 364
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P S G + R+ G RALR V+ I +
Sbjct: 365 KRYIHHYNFPPYSVGETKPLRSPGRREIGHGAL----AERALRPVIPSEEDFPYAIRLVS 420
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V++++G + ++ + ++L D ++ + V G + D
Sbjct: 421 EVLESNGSSSMGSVCASTLSLMDAGVPIKAPVAGVAMGLVKDGE---------YFTILTD 471
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED+ D+D T+ G I +Q + ++D F L AK ++ +
Sbjct: 472 IQGLEDALGDMDFKVAGTEKG-ITAIQMDIKIDGINKDIFTQALAQAKRGREFIMGKMME 530
Query: 237 VISN 240
IS
Sbjct: 531 CISE 534
Score = 117 bits (292), Expect = 2e-24, Method: Composition-based stats.
Identities = 41/234 (17%), Positives = 82/234 (35%), Gaps = 27/234 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGML 66
R +++ ++K A G+ LV++GDT ++ T E V + G +
Sbjct: 6 RTLTIEAGKIAKQANGAVLVRYGDTAVVVAVTGTKTPREGVDFFPLTVDFEEKMYAVGKI 65
Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
P R GR ++ R+I R +R + QI+ + D
Sbjct: 66 PGGFIKR------EGRPSEQAILTSRLIDRPIRPMFPEGYHNDVQIVATAVSVDPDNAPD 119
Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
A+ GA A +G +A + G++ G I++ +
Sbjct: 120 MPAMIGASCA-------------LSISDIPFEGPIAGVRVGLIDGEFIINPTVEQAKISQ 166
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
++ T I+ V+ A S++ + I L++ Q+ +++
Sbjct: 167 LNLAVAGTKD-AILMVEAGANE--VSEETMLDAIWFGHGVIKQLVEFQEKIVAE 217
>gi|257464719|ref|ZP_05629090.1| polynucleotide phosphorylase/polyadenylase [Actinobacillus minor
202]
gi|257450379|gb|EEV24422.1| polynucleotide phosphorylase/polyadenylase [Actinobacillus minor
202]
Length = 711
Score = 144 bits (363), Expect = 9e-33, Method: Composition-based stats.
Identities = 43/241 (17%), Positives = 88/241 (36%), Gaps = 18/241 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR + +R + + V GS L G+T L ATL + ++ + K
Sbjct: 314 RIDGRTVDTVRALDICTGVLPRTHGSALFTRGETQALAVATLGTERDAQIIDELTGEKSD 373
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + + R+ G + R + +V+ + + + +
Sbjct: 374 RFLFHYNFPPYSVGETGRIGSPKRREIGHGRL----AKRGVLAVMPTAEEFPYVVRVVSE 429
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ GA +AL D ++ + V + + +
Sbjct: 430 ITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEEEKFVVLSD---------I 480
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T G + +Q + + + LN AK ++ + +
Sbjct: 481 LGDEDHLGDMDFKVAGTREG-VTALQMDIKIEGITPEIMRIALNQAKGARMHILGVMEQA 539
Query: 238 I 238
I
Sbjct: 540 I 540
Score = 91.4 bits (225), Expect = 9e-17, Method: Composition-based stats.
Identities = 34/232 (14%), Positives = 72/232 (31%), Gaps = 27/232 (11%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT----KHGWITAEYGMLPR 68
++L +++ A + + DT + T ++ V + T G +P
Sbjct: 15 VTLETGAIARQATAAVMASMDDTTVFVTVVAKKDVKEGQDFFPLTVDYQERTYAAGRIPG 74
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
R GR I R+I R +R + Q+I +
Sbjct: 75 GFFKR------EGRPSEGETLIARLIDRPVRPLFPEGFFNEIQVIATVVSVNPQISPDLV 128
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+ GA A G + A G + +++ E +D
Sbjct: 129 AMIGASAA-------------LSLSGVPFNGPIGAARVGFIDNQFVLNPTMSEQRLSRLD 175
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
T ++ V+ A+ +++ A + ++ +I+ K+ +
Sbjct: 176 LVVAGT-DKAVLMVESEADI--LTEEQMLAAVVFGHEQQQVVIENIKEFVKE 224
>gi|225867825|ref|YP_002743773.1| polyribonucleotide nucleotidyltransferase [Streptococcus equi
subsp. zooepidemicus]
gi|259534159|sp|C0MFB1|PNP_STRS7 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|225701101|emb|CAW97943.1| polyribonucleotide nucleotidyltransferase [Streptococcus equi
subsp. zooepidemicus]
Length = 714
Score = 144 bits (363), Expect = 9e-33, Method: Composition-based stats.
Identities = 42/244 (17%), Positives = 81/244 (33%), Gaps = 18/244 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56
+R GR+ +++R ++ GS L G T L+ T + ++ +
Sbjct: 317 VRPDGRRVDEIRPLAAEIDFLPRVHGSGLFTRGQTQALSVLTLAPMGDTQIIDGLEPEYK 376
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y S G + A R+ G RAL V+ I +
Sbjct: 377 KRFLHHYNFPQYSVGETGRYGAAGRREIGHGALG----ERALAQVLPSLEEFPYAIRLVA 432
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V++++G + A+I +AL ++ + + + D
Sbjct: 433 EVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISD---------GTNYTVLTD 483
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T G I +Q + + L AK +++ L +
Sbjct: 484 IQGLEDHFGDMDFKVAGTRQG-ITALQMDIKIEGITPQILEEALAQAKKARFEILDLIEA 542
Query: 237 VISN 240
I+
Sbjct: 543 TIAE 546
Score = 101 bits (250), Expect = 1e-19, Method: Composition-based stats.
Identities = 40/231 (17%), Positives = 81/231 (35%), Gaps = 26/231 (11%)
Query: 13 EISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKV---PMWIRNTKHGWITAEYGMLPR 68
+ + V+K A G+ +V++G++ +LT A + +K+ + + G P
Sbjct: 14 PLVVEVGQVAKQANGATVVRYGESTVLTAAVMSKKMSTGDFFPLQVNYEEKMYAAGKFPG 73
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
R GR + R+I R +R + Q+I D A
Sbjct: 74 GWMKR------EGRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDEDASAPMA 127
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+ G+ +A G +A + + G I++ D + ++
Sbjct: 128 AMLGSSLA-------------LSISDIPFNGPIAGVQVAYVEGEFIINPDKAQQEASLLE 174
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
T I V+ A+ + L + I +LI Q+++++
Sbjct: 175 LTVAGTKD-AINMVESGAKE--LPEAIMLEALLVGHKAIQELIAFQEEIVA 222
>gi|134102361|ref|YP_001108022.1| polynucleotide phosphorylase/polyadenylase [Saccharopolyspora
erythraea NRRL 2338]
gi|187611285|sp|A4FM22|PNP_SACEN RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|133914984|emb|CAM05097.1| putative guanosine pentaphosphate synthetase and polyribonucleotide
nucleotidyltransferase [Saccharopolyspora erythraea NRRL
2338]
Length = 750
Score = 144 bits (363), Expect = 9e-33, Method: Composition-based stats.
Identities = 43/244 (17%), Positives = 85/244 (34%), Gaps = 14/244 (5%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKH 56
+R+ GR +R +S V A GS L + G+T +L +TL E+ +
Sbjct: 347 VRIDGRGLTDIRSLSAEVGVIPRAHGSALFERGETQILGVSTLNMLRLEQTIDSLSPETT 406
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P STG + + R+ G RAL V+ +
Sbjct: 407 KRYMHHYNFPPYSTGETGRVGSPKRREIGHGAL----AERALIPVLPTREEFPYALRQVS 462
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+ + ++G T ++ + ++L + ++ + V G + D
Sbjct: 463 EALGSNGSTSMGSVCASTLSLLNAGVPLKAPVAGIAMGLVSDEID-----GKTHYVALTD 517
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED+ D+D T + +Q + + L A+D ++++ +
Sbjct: 518 ILGAEDAFGDMDFKVAGTKEF-VTALQLDTKLDGIPSEVLAQALGQARDARFTILEVMAE 576
Query: 237 VISN 240
I
Sbjct: 577 AIGK 580
Score = 74.1 bits (180), Expect = 1e-11, Method: Composition-based stats.
Identities = 42/239 (17%), Positives = 66/239 (27%), Gaps = 38/239 (15%)
Query: 12 REISLTRR-VSKYAEGSCLVKF-GDTHLLTTATLEEKVPMWIRNT----KHGWITAEYGM 65
R + ++K A GS + DT LL+ T ++ G
Sbjct: 26 RTVRFETGRLAKQAAGSVVAYLDDDTMLLSATTASKQPKEHFDFFPLTVDVEERMYAAGR 85
Query: 66 LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125
+P S R GR + R+I R LR Q+++ +
Sbjct: 86 IPGSFFRR------EGRPSTDAILTCRLIDRPLRPSFVDGLRNEVQVVVTVMSLDPQDPY 139
Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185
AI GA + G V ++ G + Y +
Sbjct: 140 DVLAINGASASTQ-------------LSGLPFSGPVGGTRMALIDGQWVAFPTYEQLERA 186
Query: 186 DVDANFVM---TDSGHIVEVQGSAERATF----------SQDHFFAMLNLAKDRIADLI 231
D D I+ V+ A T +++ A L AK I L
Sbjct: 187 VFDMVVAGRIVGDDVAIMMVEAEATEKTAGLVSAGAQAPTEEVVAAGLEAAKPFIRTLC 245
>gi|325831548|ref|ZP_08164802.1| polyribonucleotide nucleotidyltransferase [Eggerthella sp. HGA1]
gi|325486802|gb|EGC89250.1| polyribonucleotide nucleotidyltransferase [Eggerthella sp. HGA1]
Length = 741
Score = 144 bits (363), Expect = 9e-33, Method: Composition-based stats.
Identities = 49/242 (20%), Positives = 86/242 (35%), Gaps = 18/242 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R GR+ +R + + GS L + G T L+ TL E + I +
Sbjct: 315 RADGRRPEDIRPLYIVPGYLPRVHGSGLFQRGQTQALSVCTLGMLNEWQRLDTIDPAEGK 374
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
+Y P TG + A R+ G RAL V+ I + +
Sbjct: 375 RYMHQYNFPPYCTGETGRMGAPKRREIGHGAL----AERALIPVLPSEDEFPYAIRVVSE 430
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
V++++G + A+ G+ +AL D ++ + + + +G I +
Sbjct: 431 VLESNGSSSMASTCGSTLALMDAGVPIKAPVSGIAMGLIKEGDDVVILSD---------I 481
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T G I +Q + S D L A + A ++ +
Sbjct: 482 QGIEDFLGDMDFKVCGTAKG-ITALQMDNKARGLSVDILARALKQASEGRAYILDAMLET 540
Query: 238 IS 239
I+
Sbjct: 541 IA 542
Score = 92.6 bits (228), Expect = 4e-17, Method: Composition-based stats.
Identities = 42/228 (18%), Positives = 77/228 (33%), Gaps = 24/228 (10%)
Query: 15 SLTRR-VSKYAEGSCLVKFGDTHLLTTATL---EEKVPMWIRNTKHGWITAEYGMLPRST 70
L ++K A GS +V GDT +L TA + E+ + G +P
Sbjct: 16 RLETGELAKQATGSVVVTQGDTTVLVTAVISKEEKDYDFFPLTVDFIEKMYAVGRIPGGY 75
Query: 71 GNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAI 130
R R + RM+ R +R ++ V+ + T +
Sbjct: 76 LKR------EARPSDKGTLTARMVDRPIRPGFADGFKREVHVVCTTLVVDSINPPDTICV 129
Query: 131 TGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDAN 190
GA AL + + + I + G IV+ + E D++
Sbjct: 130 MGASAALMLGAAPFDGPAACVR-----------IGRDVETGEFIVNPTFEESENSDLELT 178
Query: 191 FVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
T +I V+ A+ S++ A + ++ IA + Q+ +
Sbjct: 179 IAGTAD-YISMVEAGADE--ISEEDMLAAMTFGQEAIAAFCEAQQRFL 223
>gi|319900855|ref|YP_004160583.1| polyribonucleotide nucleotidyltransferase [Bacteroides helcogenes P
36-108]
gi|319415886|gb|ADV42997.1| polyribonucleotide nucleotidyltransferase [Bacteroides helcogenes P
36-108]
Length = 735
Score = 144 bits (363), Expect = 9e-33, Method: Composition-based stats.
Identities = 48/243 (19%), Positives = 86/243 (35%), Gaps = 18/243 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHG 57
RL GR+ ++R I GS + G+T L+T T L+EK+ +
Sbjct: 319 RLDGRKTTEIRPIWCETSYLPGPHGSAIFTRGETQSLSTVTLGTKLDEKIIDDVLEHGKE 378
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P STG + V R+ G RAL+ + + + D
Sbjct: 379 RFLLHYNFPPFSTGEAKAQRGVGRREIGHGHL----AWRALKGQIPADY--PYVVRVVSD 432
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+++++G + A + +AL D ++ + + + G + D+
Sbjct: 433 ILESNGSSSMATVCAGTLALMDAGVKIKKPVSGIAMGLIKN-------AGEAKYAVLSDI 485
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T G I Q + + D L AK+ ++ +
Sbjct: 486 LGDEDHLGDMDFKVTGTKDG-ITATQMDIKCDGLTYDILEKALLQAKEGREFILGKITEC 544
Query: 238 ISN 240
I+
Sbjct: 545 IAE 547
Score = 107 bits (267), Expect = 1e-21, Method: Composition-based stats.
Identities = 40/245 (16%), Positives = 80/245 (32%), Gaps = 34/245 (13%)
Query: 3 LSGRQENQMREISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----HG 57
GR I+L ++K A+GS +++ G+T LL T + +
Sbjct: 12 PDGRT------ITLETGKLAKQADGSVMLRMGNTMLLATVCAAKDAVPGTDFMPLQVEYK 65
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
+ +G P R GR R++ RALR + +
Sbjct: 66 EKFSAFGRFPGGFTKR------EGRASDYEILTCRLVDRALRPLFPDNYHAEVY------ 113
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ V + D L + + G ++ + + +++
Sbjct: 114 -------VNIILFSADGVDMPDALAGLAASAALAVSDIPFNGPISEVRVARIDNQFVINP 166
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
+ + D+D T +I+ V+ E + S+ + A + I K Q +
Sbjct: 167 TFEQLEKADMDLMVGATYE-NIMMVE--GEMSEVSEQDLLEAMKAAHEAIKIQCKAQME- 222
Query: 238 ISNEV 242
++ EV
Sbjct: 223 LAEEV 227
>gi|332359947|gb|EGJ37761.1| polyribonucleotide nucleotidyltransferase [Streptococcus sanguinis
SK1056]
Length = 733
Score = 144 bits (363), Expect = 9e-33, Method: Composition-based stats.
Identities = 43/242 (17%), Positives = 80/242 (33%), Gaps = 18/242 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56
+R GR+ +++R + GS L G T L+ T E ++ +
Sbjct: 317 VRPDGRKVDEIRPLDAEVDYLPRVHGSGLFTRGQTQALSVLTLAPMGETQIVDGLDPEYK 376
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y S G + A R+ G RAL V+ I +
Sbjct: 377 KRFMHHYNFPQYSVGETGRYGAPGRREIGHGALG----ERALEQVLPSLEEFPYAIRLVA 432
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V++++G + A+I +AL ++ + + + D
Sbjct: 433 EVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISD---------GSNYTVLTD 483
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T G I +Q + + + L AK +++ L +
Sbjct: 484 IQGLEDHFGDMDFKVAGTREG-ITALQMDIKIEGITAEILTEALAQAKKARFEILDLIEA 542
Query: 237 VI 238
I
Sbjct: 543 TI 544
Score = 116 bits (289), Expect = 3e-24, Method: Composition-based stats.
Identities = 45/232 (19%), Positives = 87/232 (37%), Gaps = 26/232 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKV---PMWIRNTKHGWITAEYGMLP 67
RE+ + V+K A GS +V++G++ +LT AT+ +K+ + + G P
Sbjct: 13 RELVVETGQVAKQANGSAVVRYGESTVLTAATMSKKMATGDFFPLQVNYEEKMYAAGKYP 72
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R GR + R+I R +R + Q+I D +
Sbjct: 73 GGFNKR------EGRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDEDASPQM 126
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
AA+ G+ +A G +A + G + G I++ + +
Sbjct: 127 AAMFGSSLA-------------LSISDIPFNGPIAGVQVGYVDGEFIINPSKEQKEVSLL 173
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
+ T I V+ A+ S+D L + + +LI Q+++++
Sbjct: 174 ELTVAGTKE-AINMVESGAKE--LSEDIMLEALLKGHEAVKELIAFQEEIVA 222
>gi|70606425|ref|YP_255295.1| exosome complex exonuclease Rrp41 [Sulfolobus acidocaldarius DSM
639]
gi|76364178|sp|Q4JB27|ECX1_SULAC RecName: Full=Probable exosome complex exonuclease 1
gi|68567073|gb|AAY80002.1| ribonuclease PH [Sulfolobus acidocaldarius DSM 639]
Length = 243
Score = 144 bits (363), Expect = 9e-33, Method: Composition-based stats.
Identities = 63/243 (25%), Positives = 108/243 (44%), Gaps = 23/243 (9%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKV-PMWIRNTKHGWI 59
+R GR+ +++R I + V K A+GS + + G+T ++ +++ P + +
Sbjct: 15 LRTDGRKLDELRPIKIELGVLKNADGSAIFEMGNTKVIAAVYGPKEMHPRHLALPDKASL 74
Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119
Y M P ST R + R E+ ++I AL S + L+ I I +V+
Sbjct: 75 RVRYHMTPFSTDERK-----NPAPSRREIELSKVIREALESTILLNLFPRTVIDIFMEVL 129
Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179
QAD GTR A+ A +AL D M D +A ++ G G ++DL+
Sbjct: 130 QADAGTRLVALMAASMALADAGIPMRDL-------------IAGVAVGKADGSLVLDLNE 176
Query: 180 GEDSTIDVDANF-VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
ED + D V+ G +V +Q + + D F LA+ I+ + LQK+ +
Sbjct: 177 QEDMWGEADMPIAVLPSLGQVVLLQLNG---FMTPDEFRRAFELAQKGISSIYALQKEAL 233
Query: 239 SNE 241
N+
Sbjct: 234 KNK 236
>gi|325686903|gb|EGD28928.1| polyribonucleotide nucleotidyltransferase [Streptococcus sanguinis
SK72]
Length = 733
Score = 144 bits (363), Expect = 9e-33, Method: Composition-based stats.
Identities = 43/242 (17%), Positives = 80/242 (33%), Gaps = 18/242 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56
+R GR+ +++R + GS L G T L+ T E ++ +
Sbjct: 317 VRPDGRKVDEIRPLDAEVDYLPRVHGSGLFTRGQTQALSVLTLAPMGETQIVDGLDPEYK 376
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y S G + A R+ G RAL V+ I +
Sbjct: 377 KRFMHHYNFPQYSVGETGRYGAPGRREIGHGALG----ERALEQVLPSLEEFPYAIRLVA 432
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V++++G + A+I +AL ++ + + + D
Sbjct: 433 EVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISD---------GSNYTVLTD 483
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T G I +Q + + + L AK +++ L +
Sbjct: 484 IQGLEDHFGDMDFKVAGTREG-ITALQMDIKIEGITAEILTEALAQAKKARFEILDLIEA 542
Query: 237 VI 238
I
Sbjct: 543 TI 544
Score = 117 bits (292), Expect = 2e-24, Method: Composition-based stats.
Identities = 45/232 (19%), Positives = 87/232 (37%), Gaps = 26/232 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKV---PMWIRNTKHGWITAEYGMLP 67
RE+ + V+K A GS +V++G++ +LT AT+ +K+ + + G P
Sbjct: 13 RELVVETGQVAKQANGSAVVRYGESTVLTAATMSKKMATGDFFPLQVNYEEKMYAAGKYP 72
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R GR + R+I R +R + Q+I D +
Sbjct: 73 GGFNKR------EGRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDEDASPQM 126
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
AA+ G+ +A G +A + G + G I++ + +
Sbjct: 127 AAMFGSSLA-------------LSISDIPFNGPIAGVQVGYVDGEFIINPRKEQKEVSLL 173
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
+ T I V+ A+ S+D L + + +LI Q+++++
Sbjct: 174 ELTVAGTKD-AINMVESGAKE--LSEDIMLEALLKGHEAVKELIAFQEEIVA 222
>gi|146313236|ref|YP_001178310.1| polynucleotide phosphorylase/polyadenylase [Enterobacter sp. 638]
gi|187610301|sp|A4WEX9|PNP_ENT38 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|145320112|gb|ABP62259.1| Polyribonucleotide nucleotidyltransferase [Enterobacter sp. 638]
Length = 711
Score = 144 bits (363), Expect = 9e-33, Method: Composition-based stats.
Identities = 44/242 (18%), Positives = 92/242 (38%), Gaps = 18/242 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR+++ +R + + V GS L G+T L TATL + + + +
Sbjct: 315 RIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQNIDELMGDRTD 374
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + R+ G + R + +V+ + + + +
Sbjct: 375 SFLFHYNFPPYSVGETGMVGSPKRREIGHGRL----AKRGVLAVMPEADKFPYTVRVVSE 430
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ GA +AL D ++ + V +G + +
Sbjct: 431 ITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNFVVLSD---------I 481
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D + G I +Q + +++ LN AK ++ + +
Sbjct: 482 LGDEDHLGDMDFKVAGSREG-ISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQA 540
Query: 238 IS 239
I+
Sbjct: 541 IN 542
Score = 95.7 bits (236), Expect = 5e-18, Method: Composition-based stats.
Identities = 37/232 (15%), Positives = 76/232 (32%), Gaps = 27/232 (11%)
Query: 14 ISLTRRV-SKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----HGWITAEYGMLPR 68
++L + ++ A + +V DT + T ++K + T G +P
Sbjct: 16 VTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKTKPGQDFFPLTVNYQERTYAAGKIPG 75
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
R GR I R+I R +R + + Q+I +
Sbjct: 76 GFFRR------EGRPSEGETLIARLIDRPVRPLFPEGFINEVQVIATVVSVNPQVNPDIV 129
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+ GA A G + + G + +++ E +D
Sbjct: 130 AMIGASAA-------------LSLSGLPFNGPIGSARVGYINDQYVLNPTQDELKESKLD 176
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
T++ ++ V+ AE S+D + ++ +I+ KD++
Sbjct: 177 LVVAGTEA-AVLMVESEAEL--LSEDQMLGAVVFGHEQQQIVIENIKDLVKE 225
>gi|269467861|gb|EEZ79604.1| Polyribonucleotide nucleotidyltransferase [uncultured SUP05 cluster
bacterium]
Length = 697
Score = 144 bits (363), Expect = 9e-33, Method: Composition-based stats.
Identities = 43/243 (17%), Positives = 86/243 (35%), Gaps = 20/243 (8%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWI------RNTK 55
R+ GR +RE+ + V + GS L G+T L TL K + K
Sbjct: 317 RIDGRDNETVRELKIETGVLENTHGSALFTRGETQALVVTTLGSKRDAQLIEKLESSERK 376
Query: 56 HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115
+ + Y P G + R+ G + R + + + I +
Sbjct: 377 NDYFLLHYNFPPYCVGETGRVGTTKRREIGHGRL----ARRGISACLPTIEEYPYTIRVV 432
Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIV 175
++ +++G + A++ G+ ++L D M+ + V +G +
Sbjct: 433 SEITESNGSSSMASVCGSSLSLMDAGVPMKAPVAGIAMGLVKEGDRFTVLTD-------- 484
Query: 176 DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
+ ED D+D T G + +Q + +Q+ L AK+ +++
Sbjct: 485 -ILGDEDHLGDMDFKVAGTSRG-VNALQMDIKIQGITQEIMDIALKQAKEARLNILGQMN 542
Query: 236 DVI 238
+I
Sbjct: 543 KII 545
Score = 111 bits (278), Expect = 6e-23, Method: Composition-based stats.
Identities = 39/233 (16%), Positives = 74/233 (31%), Gaps = 31/233 (13%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT----KHGWITAEYGMLPR 68
I+L +++ A G+ L DT +L T +++ + T G +P
Sbjct: 17 ITLETGRIARQAHGAVLASMDDTQVLVTVVGSKEMRPGQDFFPLSVDYIEKTYAAGKIPG 76
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
R R + R+I R +R + + Q++I +
Sbjct: 77 GFLKR------EARPSEKETLTSRLIDRPIRPLFPAGFMNEVQVLITVISANKEVDPDMI 130
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+ G A G + G I++ Y E + D+D
Sbjct: 131 AMLGVSAA-------------LSISGVPFSGPIGGARVGFKNDEFILNPTYSELADSDLD 177
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKD----RIADLIKLQKDV 237
TD ++ V+ A S++ + A D I ++ + +V
Sbjct: 178 MVVAGTDE-AVLMVESEANE--LSEEIMLKAVMCAHDEYQVAIKNIAEFVAEV 227
>gi|169630188|ref|YP_001703837.1| polynucleotide phosphorylase/polyadenylase [Mycobacterium abscessus
ATCC 19977]
gi|226702665|sp|B1MD62|PNP_MYCA9 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|169242155|emb|CAM63183.1| Bifunctional protein polyribonucleotide nucleotidyltransferase GpsI
[Mycobacterium abscessus]
Length = 755
Score = 144 bits (363), Expect = 9e-33, Method: Composition-based stats.
Identities = 45/242 (18%), Positives = 84/242 (34%), Gaps = 9/242 (3%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKH 56
R+ GR +R +S V A GS L + G+T ++ TL+ + +
Sbjct: 346 FRIDGRGVTDIRALSAEVAVIPRAHGSALFERGETQIMGVTTLDMIKMAQQVDSLGPETT 405
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P STG + + R+ G RAL V+ I
Sbjct: 406 KRYMHHYNFPPFSTGETGRVGSPKRREIGHGAL----AERALIPVLPSIEEFPYAIRQVS 461
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+ + ++G T ++ + +AL + ++ + V A + D
Sbjct: 462 EALGSNGSTSMGSVCASTLALLNAGVPLKAPVAGIAMGLVSDDIELADGTAERRFVALTD 521
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED+ D+D T + +Q + A L+ AKD ++++ +
Sbjct: 522 ILGAEDAFGDMDFKVAGTKDF-VTALQLDTKLDGIPSQVLAAALSQAKDARTTILEVMAE 580
Query: 237 VI 238
I
Sbjct: 581 AI 582
Score = 69.1 bits (167), Expect = 5e-10, Method: Composition-based stats.
Identities = 40/248 (16%), Positives = 67/248 (27%), Gaps = 42/248 (16%)
Query: 12 REISLTRR-VSKYAEGSCLVKF-GDTHLLTTA----TLEEKVPMWIRNTKHGWITAEYGM 65
R I ++ A GS + +T LL+T T ++ + G
Sbjct: 25 RTIRFETGRLALQAAGSVVAYLDDETMLLSTTAASKTPKDHFDFFPLTVDVEERMYAAGR 84
Query: 66 LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125
+P S R GR + R+I R LR Q+++ +
Sbjct: 85 IPGSFFRR------EGRPSTDAILTCRLIDRPLRPSFVSGLRNEIQVVVTVLSLNPADLY 138
Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185
AI A + G V + ++ G + +
Sbjct: 139 DVLAINAASASTQLAG-------------LPFSGPVGGVRVALIEGQWVAFPTVEQLEKA 185
Query: 186 DVDANFVMTDSG-------HIVEVQGSAERATF----------SQDHFFAMLNLAKDRIA 228
D G I+ V+ A ++ L AK IA
Sbjct: 186 VFDMVVAGRKVGTAGDSDVAIMMVEAEATDNVIALIDGGAGAPTETVVAEGLEAAKPFIA 245
Query: 229 DLIKLQKD 236
L Q++
Sbjct: 246 ALCTAQEE 253
>gi|159036978|ref|YP_001536231.1| polynucleotide phosphorylase/polyadenylase [Salinispora arenicola
CNS-205]
gi|187611286|sp|A8M758|PNP_SALAI RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|157915813|gb|ABV97240.1| guanosine pentaphosphate synthetase I/polyribonucleotide
nucleotidyltransferase [Salinispora arenicola CNS-205]
Length = 786
Score = 144 bits (363), Expect = 1e-32, Method: Composition-based stats.
Identities = 43/243 (17%), Positives = 82/243 (33%), Gaps = 14/243 (5%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
+R+ GR +R ++ V GS L + G+T +L TL E+ + K
Sbjct: 340 VRIDGRGPRDIRPLTAEVGVLPRVHGSALFERGETQILGVTTLNMLRMEQSLDTLSPEKS 399
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P STG + + R+ G RAL V+ I
Sbjct: 400 KRYMHNYNFPPYSTGETGRVGSPKRREIGHGAL----AERALIPVLPSREEFPYAIRQVS 455
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+ + ++G T ++ + + L ++ + + G + D
Sbjct: 456 EALGSNGSTSMGSVCASTLGLLSAGVPLKAPVAGIAMGLISDE-----VEGKTRYVTLTD 510
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED+ D+D T + +Q + D A L A + ++++ +
Sbjct: 511 ILGAEDAFGDMDFKVAGTQEF-VTALQLDTKLDGIPSDVLAAALQQAYEARQTILEVMQA 569
Query: 237 VIS 239
I
Sbjct: 570 AIE 572
Score = 93.4 bits (230), Expect = 2e-17, Method: Composition-based stats.
Identities = 40/248 (16%), Positives = 76/248 (30%), Gaps = 39/248 (15%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKHGWITAEYGML 66
R I+ + +++ A GS + + G+T +L+ T+ E+ + G +
Sbjct: 23 RVITFSTGRLARQAAGSVVAQLGETVVLSATTVGRQPKEQFDFFPLTVDVEERMYAAGRI 82
Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
P S R GR + R+I R LR Q++ +
Sbjct: 83 PGSFFRR------EGRPSEDAILTCRLIDRPLRPSFVKGLRNEVQVVETVLALDPSHPYD 136
Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
AI A ++ G + A + G + + E
Sbjct: 137 VVAINAASMST-------------KLSGLPFSGPIGATRMAHIDGSWVAFPTHEELERAT 183
Query: 187 VDANFVMT----DSGHIVEVQGSAERATF----------SQDHFFAMLNLAKDRIADLIK 232
D I+ V+ A T +++ + L AK I +L +
Sbjct: 184 FDMVVAGRALPDGDVAIMMVEAEATEHTVKLVAGGASAPTEEVVASGLEAAKPAIRELCR 243
Query: 233 LQKDVISN 240
Q + ++
Sbjct: 244 AQSE-LAE 250
>gi|262281984|ref|ZP_06059753.1| polyribonucleotide nucleotidyltransferase [Streptococcus sp.
2_1_36FAA]
gi|262262438|gb|EEY81135.1| polyribonucleotide nucleotidyltransferase [Streptococcus sp.
2_1_36FAA]
Length = 668
Score = 144 bits (363), Expect = 1e-32, Method: Composition-based stats.
Identities = 43/242 (17%), Positives = 80/242 (33%), Gaps = 18/242 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56
+R GR+ +++R + GS L G T L+ T E ++ +
Sbjct: 253 VRPDGRKVDEIRPLDAEVDYLPRVHGSGLFTRGQTQALSVLTLAPMGETQIVDGLDPEYK 312
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y S G + A R+ G RAL V+ I +
Sbjct: 313 KRFMHHYNFPQYSVGETGRYGAPGRREIGHGALG----ERALEQVLPSLEEFPYAIRLVA 368
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V++++G + A+I +AL ++ + + + D
Sbjct: 369 EVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLI---------SYGSNYTVLTD 419
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T G I +Q + + + L AK +++ L +
Sbjct: 420 IQGLEDHFGDMDFKVAGTREG-ITALQMDIKIEGITAEILTEALAQAKKARFEILDLIEA 478
Query: 237 VI 238
I
Sbjct: 479 TI 480
Score = 74.5 bits (181), Expect = 1e-11, Method: Composition-based stats.
Identities = 31/180 (17%), Positives = 58/180 (32%), Gaps = 22/180 (12%)
Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119
G P R GR + R+I R +R + Q+I
Sbjct: 1 MYAAGKYPGGFNKR------EGRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSY 54
Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179
D + AA+ G+ +A G +A + G + G I++
Sbjct: 55 DEDASPQMAAMFGSSLA-------------LSISDIPFNGPIAGVQVGYVDGEFIINPSK 101
Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
+ ++ T I V+ A+ S+D L + +LI Q+++++
Sbjct: 102 EQKEVSLLELTVAGTKE-AINMVESGAKE--LSEDIMLEALLKGHQAVKELIAFQEEIVA 158
>gi|169634530|ref|YP_001708266.1| polynucleotide phosphorylase/polyadenylase [Acinetobacter baumannii
SDF]
gi|226702588|sp|B0VLR7|PNP_ACIBS RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|169153322|emb|CAP02433.1| polyribonucleotide nucleotidyltransferase (Polynucleotide
phosphorylase) (PNPase) [Acinetobacter baumannii]
Length = 697
Score = 144 bits (363), Expect = 1e-32, Method: Composition-based stats.
Identities = 48/239 (20%), Positives = 89/239 (37%), Gaps = 10/239 (4%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R+ GR +R + + V + A GS L G+T L T TL + +T G T
Sbjct: 317 RIDGRDTKTVRALDVQVGVLERAHGSALFTRGETQALVTTTLGNTRDALMVDTLAGTKTD 376
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
+ + V R R+ R +++V+ + I I D+ ++
Sbjct: 377 NFMLHYNFPAYSVGETGRESGPKRREIGHGRLARRGVQAVLPAADRFPYVIRIVSDITES 436
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
+G + A++ GA ++L D ++ + V +G A+ + E
Sbjct: 437 NGSSSMASVCGASLSLMDAGVPLKAPVAGIAMGLVKEGERFAVLSD---------ILGDE 487
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
D D+D + +G I +Q + +++ LN A ++ VIS
Sbjct: 488 DHLGDMDFKVAGSANG-ITALQMDIKIEGITEEIMEVALNQAFAGRMHILNEMNKVISR 545
Score = 68.3 bits (165), Expect = 8e-10, Method: Composition-based stats.
Identities = 36/228 (15%), Positives = 72/228 (31%), Gaps = 28/228 (12%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEE----KVPMWIRNTKHGWITAEYGMLPR 68
+ L V++ A + L+ G +L + + G +P
Sbjct: 18 VVLETGRVARQAN-TVLITMGGVTVLVAVVAAPTAKAGQDFFPLTVNYQEKQYAAGRIPG 76
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
G R GR R+I R +R + Q+ A
Sbjct: 77 GYGKR------EGRASEAETLTSRLIDRPIRPLFPEGYYNEIQVTATVVSSDKTMEADIA 130
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+ G AL +G + A G++ G +++ ++ + + D+D
Sbjct: 131 AMLGTSAALAIAGT-------------PFRGPIGAARVGLINGEYVLNPNFEQMAQSDLD 177
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
T+S ++ V+ A+ S+D + D + I+ +
Sbjct: 178 LVVAGTES-AVLMVESEAKE--LSEDQMLGAVLFGHDEMQIAIQAINE 222
>gi|87200077|ref|YP_497334.1| ribonuclease PH [Novosphingobium aromaticivorans DSM 12444]
gi|87135758|gb|ABD26500.1| RNAse PH [Novosphingobium aromaticivorans DSM 12444]
Length = 227
Score = 144 bits (363), Expect = 1e-32, Method: Composition-based stats.
Identities = 118/229 (51%), Positives = 157/229 (68%), Gaps = 2/229 (0%)
Query: 11 MREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRST 70
MR IS+ +K+AEGS L+ FGDT +L TA++EE+VP ++R GW+TAEY MLPR+T
Sbjct: 1 MRAISIETAFTKHAEGSVLICFGDTKVLVTASVEERVPPFLRGKGEGWVTAEYSMLPRAT 60
Query: 71 GNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAI 130
R REA G+Q GR+QEIQR+IGR+LR+V DL LG RQI +DCDVIQADGGTRTAAI
Sbjct: 61 HTRGSREAAKGKQSGRTQEIQRLIGRSLRAVTDLKKLGERQITLDCDVIQADGGTRTAAI 120
Query: 131 TGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDAN 190
+GAWVAL +Q + D L VAA+SCG++ G P++DLDY EDS+ D DAN
Sbjct: 121 SGAWVALRLAVQKLLDS--GAIKEDPLTEKVAAVSCGIVNGQPVLDLDYIEDSSADADAN 178
Query: 191 FVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
FV+ + G I E Q +AE AT+ ++ +L LA+ A++ Q+ +
Sbjct: 179 FVLIEGGKIAEAQATAEGATYDEEGLLRLLRLARMGCAEIFAAQEKAVR 227
>gi|22536387|ref|NP_687238.1| polynucleotide phosphorylase/polyadenylase [Streptococcus
agalactiae 2603V/R]
gi|81455352|sp|Q8E1Z8|PNP_STRA5 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|22533214|gb|AAM99110.1|AE014201_8 polyribonucleotide nucleotidyltransferase [Streptococcus agalactiae
2603V/R]
Length = 709
Score = 144 bits (363), Expect = 1e-32, Method: Composition-based stats.
Identities = 42/244 (17%), Positives = 79/244 (32%), Gaps = 18/244 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56
+R GR+ +++R + GS L G T L+ T E ++ +
Sbjct: 317 IRPDGRRVDEIRPLDAEIDFLPQVHGSGLFTRGQTQALSVLTLAPMGEAQIIDGLTPEYK 376
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y S G + A R+ G RAL V+ I +
Sbjct: 377 KRFMHHYNFPQYSVGETGRYGAAGRREIGHGALG----ERALEQVLPRLEEFPYAIRLVA 432
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V++++G + A+I +AL ++ + + + D
Sbjct: 433 EVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISD---------GTNYTVLTD 483
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T G I +Q + + L AK +++ +
Sbjct: 484 IQGLEDHFGDMDFKVAGTREG-ITALQMDIKIEGITPQILEEALAQAKKARFEILDVLHG 542
Query: 237 VISN 240
I+
Sbjct: 543 AIAE 546
Score = 102 bits (253), Expect = 6e-20, Method: Composition-based stats.
Identities = 41/230 (17%), Positives = 82/230 (35%), Gaps = 26/230 (11%)
Query: 13 EISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKV---PMWIRNTKHGWITAEYGMLPR 68
++ + V+K A GS +V++GD+ +LT A + +K+ + + G P
Sbjct: 14 KLVVETGQVAKQANGSVVVRYGDSTVLTAAVMSKKMSTGDFFPLQVNYEEKMYAAGKFPG 73
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
R GR + R+I R +R + Q+I + A
Sbjct: 74 GFNKR------EGRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSFDENASAPMA 127
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+ G+ +A G +A + + G I++ E ++
Sbjct: 128 AMFGSSLA-------------LSISDIPFNGPIAGVQVAYVDGNFIINPTAQEQEASALE 174
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
T I V+ A+ S++ L + + +LI Q++++
Sbjct: 175 LTVAGTKE-AINMVESGAKE--LSEEIMLEALLKGHEAVCELIAFQEEIV 221
>gi|332359275|gb|EGJ37096.1| polyribonucleotide nucleotidyltransferase [Streptococcus sanguinis
SK49]
Length = 733
Score = 144 bits (363), Expect = 1e-32, Method: Composition-based stats.
Identities = 44/242 (18%), Positives = 80/242 (33%), Gaps = 18/242 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56
+R GR+ N++R + GS L G T L+ T E ++ +
Sbjct: 317 VRPDGRKVNEIRPLDAEVDYLPRVHGSGLFTRGQTQALSVLTLAPMGETQIVDGLDPEYK 376
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y S G + A R+ G RAL V+ I +
Sbjct: 377 KRFMHHYNFPQYSVGETGRYGAPGRREIGHGALG----ERALEQVLPSLEEFPYAIRLVA 432
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V++++G + A+I +AL ++ + + G +
Sbjct: 433 EVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISDGSNYTVLTD--------- 483
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T G I +Q + + + L AK +++ L +
Sbjct: 484 IQGLEDHFGDMDFKVAGTREG-ITALQMDIKIEGITAEILTEALAQAKKARFEILDLIEA 542
Query: 237 VI 238
I
Sbjct: 543 TI 544
Score = 115 bits (287), Expect = 5e-24, Method: Composition-based stats.
Identities = 44/232 (18%), Positives = 87/232 (37%), Gaps = 26/232 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKV---PMWIRNTKHGWITAEYGMLP 67
R++ + V+K A GS +V++G++ +LT AT+ +K+ + + G P
Sbjct: 13 RDLVVETGQVAKQANGSAVVRYGESTVLTAATMSKKMATGDFFPLQVNYEEKMYAAGKYP 72
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R GR + R+I R +R + Q+I D +
Sbjct: 73 GGFNKR------EGRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDEDASPQM 126
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
AA+ G+ +A G +A + G + G I++ + +
Sbjct: 127 AAMFGSSLA-------------LSISDIPFNGPIAGVQVGYVDGEFIINPSKEQKEVSLL 173
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
+ T I V+ A+ S+D L + + +LI Q+++++
Sbjct: 174 ELTVAGTKE-AINMVESGAKE--LSEDVMLEALLKGHEAVKELIAFQEEIVA 222
>gi|332365583|gb|EGJ43343.1| polyribonucleotide nucleotidyltransferase [Streptococcus sanguinis
SK1059]
Length = 733
Score = 144 bits (363), Expect = 1e-32, Method: Composition-based stats.
Identities = 43/242 (17%), Positives = 80/242 (33%), Gaps = 18/242 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56
+R GR+ +++R + GS L G T L+ T E ++ +
Sbjct: 317 VRPDGRKVDEIRPLDAEVDYLPRVHGSGLFTRGQTQALSVLTLAPMGETQIVDGLDPEYK 376
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y S G + A R+ G RAL V+ I +
Sbjct: 377 KRFMHHYNFPQYSVGETGRYGAPGRREIGHGALG----ERALEQVLPSLEEFPYAIRLVA 432
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V++++G + A+I +AL ++ + + + D
Sbjct: 433 EVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISD---------GSNYTVLTD 483
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T G I +Q + + + L AK +++ L +
Sbjct: 484 IQGLEDHFGDMDFKVAGTREG-ITALQMDIKIEGITAEILTEALAQAKKARFEILDLIEA 542
Query: 237 VI 238
I
Sbjct: 543 TI 544
Score = 115 bits (287), Expect = 6e-24, Method: Composition-based stats.
Identities = 45/232 (19%), Positives = 86/232 (37%), Gaps = 26/232 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKV---PMWIRNTKHGWITAEYGMLP 67
RE+ + V+K A GS +V++G++ +LT AT+ +K+ + + G P
Sbjct: 13 RELVVETGQVAKQANGSAVVRYGESTVLTAATMSKKMATGDFFPLQVNYEEKMYAAGKYP 72
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R GR + R+I R +R + Q+I D +
Sbjct: 73 GGFNKR------EGRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDEDASPQM 126
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
AA+ G+ +A G +A + G + G I++ + +
Sbjct: 127 AAMFGSSLA-------------LSISDIPFNGPIAGVQVGYVDGEFIINPSKEQKEVSLL 173
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
+ T I V+ A+ S+D L + +LI Q+++++
Sbjct: 174 ELTVAGTKE-AINMVESGAKE--LSEDIMLEALLKGHQAVKELIAFQEEIVA 222
>gi|320096011|ref|ZP_08027624.1| tRNA nucleotidyltransferase [Actinomyces sp. oral taxon 178 str.
F0338]
gi|319977082|gb|EFW08812.1| tRNA nucleotidyltransferase [Actinomyces sp. oral taxon 178 str.
F0338]
Length = 255
Score = 144 bits (363), Expect = 1e-32, Method: Composition-based stats.
Identities = 111/238 (46%), Positives = 151/238 (63%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R GR +Q+R +S+TR S EGS L++FG T +L A+ VP W R++ GW+TA
Sbjct: 7 RADGRAPDQLRPVSITRGWSGTGEGSVLIEFGATRVLCVASFTTGVPRWKRDSGEGWVTA 66
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
EY MLPR+T R RE+V GR GGR+QEI R+IGR+LR VVD ALG + +DCDV++A
Sbjct: 67 EYAMLPRATDQRSPRESVKGRVGGRTQEISRLIGRSLRGVVDTRALGENTVTLDCDVLRA 126
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
DGGTRTA++TGA++AL D + + ++VL V+AIS G++ G P++DL Y E
Sbjct: 127 DGGTRTASVTGAYIALADAVAWAKRNGAVSPGAKVLTDSVSAISVGIVDGAPVLDLPYAE 186
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
D D N V T G +EVQG+AE A FS+ A+L+LA A L Q+ +S
Sbjct: 187 DVRAHTDMNVVQTGDGRFIEVQGTAEHAPFSRAELSALLDLAALGNARLADAQRAALS 244
>gi|255531752|ref|YP_003092124.1| polyribonucleotide nucleotidyltransferase [Pedobacter heparinus DSM
2366]
gi|255344736|gb|ACU04062.1| Polyribonucleotide nucleotidyltransferase [Pedobacter heparinus DSM
2366]
Length = 716
Score = 144 bits (363), Expect = 1e-32, Method: Composition-based stats.
Identities = 50/243 (20%), Positives = 85/243 (34%), Gaps = 16/243 (6%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
+RL GR +R I A GS + G+T LTT TL +E++ +
Sbjct: 316 IRLDGRDVRTVRPIWSEVGYLPAAHGSAVFTRGETQSLTTVTLGSKDDEQMIDGAFINGY 375
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y STG R+ G R+L+ V+ I I
Sbjct: 376 NKFLLHYNFPGFSTGEVRPNRGAGRREIGHGNL----AMRSLKKVLPGLEENPYTIRIVS 431
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
D+++++G + A + +AL D ++ + + + + D
Sbjct: 432 DILESNGSSSMATVCAGTLALMDAGVKIKAPVSGIAMGLITDEKSG-------KYAILSD 484
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T+ G IV Q + + LN AK+ ++ K
Sbjct: 485 ILGDEDHLGDMDFKVTGTEKG-IVACQMDLKINGLKWEVLTNALNQAKEARLHILNEMKK 543
Query: 237 VIS 239
I+
Sbjct: 544 TIA 546
Score = 104 bits (258), Expect = 1e-20, Method: Composition-based stats.
Identities = 43/239 (17%), Positives = 80/239 (33%), Gaps = 28/239 (11%)
Query: 7 QENQMREISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITA 61
R I + ++K A+G+ +VK GDT LL T + V + + A
Sbjct: 9 DLGDGRTIEIETGKLAKQADGAVVVKMGDTMLLATVVSTVGAKAGVDFLPLSVDYQEKYA 68
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
G +P R R I R++ RALR + Q
Sbjct: 69 AAGRIPGGFLRR------EARLSDYEVLISRLVDRALRPMFPEDYHSDTQ---------- 112
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
+ I+ + DCL + + G ++ + + G +++ +
Sbjct: 113 ---VMISLISSDKNIMPDCLAGLAASAAIAVSDIPFNGPISEVRVARIDGKFVINPYVTD 169
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
D++ T+ IV V+ E S+ + A I ++ QK+ ++
Sbjct: 170 LERADIEFLVAGTEKD-IVMVE--GECNEISETEMVEAIEFAHKAIVIQVQAQKE-LAE 224
>gi|164688511|ref|ZP_02212539.1| hypothetical protein CLOBAR_02156 [Clostridium bartlettii DSM
16795]
gi|164602924|gb|EDQ96389.1| hypothetical protein CLOBAR_02156 [Clostridium bartlettii DSM
16795]
Length = 701
Score = 144 bits (363), Expect = 1e-32, Method: Composition-based stats.
Identities = 42/241 (17%), Positives = 81/241 (33%), Gaps = 18/241 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHG 57
R R+ +++R I GS L G T ++T T + ++ + +
Sbjct: 315 RPDARKTDEIRPIWCDCGFIPRTHGSGLFTRGQTQVMTITTLGALGDVQILDGLDEEESK 374
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y S G R+ G RAL V+ I + +
Sbjct: 375 RYMHHYNFPAYSVGEVRPSRGPGRREIGHGAL----AERALLPVIPSKEEFPYAIRLVSE 430
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
V+ ++G T ++ G+ ++L D ++D + + + AI +
Sbjct: 431 VLSSNGSTSQGSVCGSTLSLLDAGVPIKDMVAGIAMGLIEQDGKIAILSD---------I 481
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T+ G I +Q + A ++ L A+ ++ +
Sbjct: 482 QGMEDHLGDMDFKVAGTEHG-ITAIQMDIKIAGIDEEILRTALAQARVGRLHILNEMRKT 540
Query: 238 I 238
I
Sbjct: 541 I 541
Score = 100 bits (249), Expect = 1e-19, Method: Composition-based stats.
Identities = 33/234 (14%), Positives = 81/234 (34%), Gaps = 27/234 (11%)
Query: 12 REISLTRRVSKY-AEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKHGWITAEYGML 66
RE+S+ A GS ++K+G+T ++ + E V + + + G +
Sbjct: 14 RELSVEIGKIAQLASGSAILKYGETMVMVNVSKSAEPREGVDFFPLSVDYEEKLYSVGKI 73
Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
P R G+ ++ R+I R +R + Q++ + D
Sbjct: 74 PGGFLKR------EGKASEKATLTSRLIDRPIRPLFPKGFRNDVQVVATVLSVDHDCTPD 127
Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
A+ G+ VA G +++ G++ G +++ +
Sbjct: 128 VVAMIGSSVA-------------LSISEIPFNGPTGSVNVGLVDGALVINPTAEQREKSS 174
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
+ T ++ V+ A+ + + A + I ++ +++++
Sbjct: 175 LHLTVSGTKD-AVMMVEAGADEVP--ESLMLEAILTAHEEIKKIVAFIEEIVAE 225
>gi|169797384|ref|YP_001715177.1| polynucleotide phosphorylase/polyadenylase [Acinetobacter baumannii
AYE]
gi|184156693|ref|YP_001845032.1| polynucleotide phosphorylase/polyadenylase [Acinetobacter baumannii
ACICU]
gi|213155801|ref|YP_002317846.1| polyribonucleotide nucleotidyltransferase [Acinetobacter baumannii
AB0057]
gi|215484824|ref|YP_002327059.1| Polyribonucleotide nucleotidyltransferase [Acinetobacter baumannii
AB307-0294]
gi|239500905|ref|ZP_04660215.1| polynucleotide phosphorylase/polyadenylase [Acinetobacter baumannii
AB900]
gi|260556276|ref|ZP_05828495.1| polyribonucleotide nucleotidyltransferase [Acinetobacter baumannii
ATCC 19606]
gi|301348030|ref|ZP_07228771.1| polynucleotide phosphorylase/polyadenylase [Acinetobacter baumannii
AB056]
gi|301510806|ref|ZP_07236043.1| polynucleotide phosphorylase/polyadenylase [Acinetobacter baumannii
AB058]
gi|301594566|ref|ZP_07239574.1| polynucleotide phosphorylase/polyadenylase [Acinetobacter baumannii
AB059]
gi|187471097|sp|A3M1M7|PNP_ACIBT RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|226702585|sp|B7H0Z1|PNP_ACIB3 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|226702586|sp|B7I3U1|PNP_ACIB5 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|226702587|sp|B2I2Q0|PNP_ACIBC RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|226702589|sp|B0VEA3|PNP_ACIBY RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|169150311|emb|CAM88208.1| polyribonucleotide nucleotidyltransferase (Polynucleotide
phosphorylase) (PNPase) [Acinetobacter baumannii AYE]
gi|183208287|gb|ACC55685.1| Polyribonucleotide nucleotidyltransferase (polynucleotide
phosphorylase) [Acinetobacter baumannii ACICU]
gi|193076200|gb|ABO10821.2| polyribonucleotide nucleotidyltransferase [Acinetobacter baumannii
ATCC 17978]
gi|213054961|gb|ACJ39863.1| polyribonucleotide nucleotidyltransferase [Acinetobacter baumannii
AB0057]
gi|213985856|gb|ACJ56155.1| Polyribonucleotide nucleotidyltransferase [Acinetobacter baumannii
AB307-0294]
gi|260410331|gb|EEX03630.1| polyribonucleotide nucleotidyltransferase [Acinetobacter baumannii
ATCC 19606]
Length = 697
Score = 144 bits (363), Expect = 1e-32, Method: Composition-based stats.
Identities = 48/239 (20%), Positives = 89/239 (37%), Gaps = 10/239 (4%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R+ GR +R + + V + A GS L G+T L T TL + +T G T
Sbjct: 317 RIDGRDTKTVRALDVQVGVLERAHGSALFTRGETQALVTTTLGNTRDALMVDTLAGTKTD 376
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
+ + V R R+ R +++V+ + I I D+ ++
Sbjct: 377 NFMLHYNFPAYSVGETGRESGPKRREIGHGRLARRGVQAVLPAADRFPYVIRIVSDITES 436
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
+G + A++ GA ++L D ++ + V +G A+ + E
Sbjct: 437 NGSSSMASVCGASLSLMDAGVPLKAPVAGIAMGLVKEGERFAVLSD---------ILGDE 487
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
D D+D + +G I +Q + +++ LN A ++ VIS
Sbjct: 488 DHLGDMDFKVAGSANG-ITALQMDIKIEGITEEIMEVALNQAFAGRMHILNEMNKVISR 545
Score = 68.3 bits (165), Expect = 9e-10, Method: Composition-based stats.
Identities = 37/228 (16%), Positives = 73/228 (32%), Gaps = 28/228 (12%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEE----KVPMWIRNTKHGWITAEYGMLPR 68
+ L V++ A + L+ G +L + + G +P
Sbjct: 18 VVLETGRVARQAN-TVLITMGGVTVLVAVVAAPTAKAGQDFFPLTVNYQEKQYAAGRIPG 76
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
G R GR I R+I R +R + Q+ A
Sbjct: 77 GYGKR------EGRASEAETLISRLIDRPIRPLFPEGYYNEIQVTATVVSSDKTMEADIA 130
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+ G AL +G + A G++ G +++ ++ + + D+D
Sbjct: 131 AMLGTSAALAIAGT-------------PFRGPIGAARVGLINGEYVLNPNFEQMAQSDLD 177
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
T+S ++ V+ A+ S+D + D + I+ +
Sbjct: 178 LVVAGTES-AVLMVESEAKE--LSEDQMLGAVLFGHDEMQIAIQAINE 222
>gi|152979713|ref|YP_001345342.1| polynucleotide phosphorylase/polyadenylase [Actinobacillus
succinogenes 130Z]
gi|187470960|sp|A6VR10|PNP_ACTSZ RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|150841436|gb|ABR75407.1| Polyribonucleotide nucleotidyltransferase [Actinobacillus
succinogenes 130Z]
Length = 707
Score = 144 bits (363), Expect = 1e-32, Method: Composition-based stats.
Identities = 40/242 (16%), Positives = 89/242 (36%), Gaps = 18/242 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR + +R + + V GS + G+T L TL + ++ + +
Sbjct: 314 RIDGRTVDTVRALDICTGVLPRTHGSAIFTRGETQALAVVTLGTERDAQILDELTGERQD 373
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + + R+ G + R + +V+ + + + +
Sbjct: 374 TFLFHYNFPPYSVGETGRVGSPKRREIGHGRL----AKRGVAAVMPSISEFPYVVRVVSE 429
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ GA +AL D ++ + V + + +
Sbjct: 430 ITESNGSSSMASVCGASLALMDAGVPVKSAVAGIAMGLVKEEDKFVVLSD---------I 480
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T +G + +Q + + + LN AK ++ + +
Sbjct: 481 LGDEDHLGDMDFKVAGTRTG-VTALQMDIKIEGITPEIMQIALNQAKSARMHILGVMEQA 539
Query: 238 IS 239
I+
Sbjct: 540 IA 541
Score = 94.1 bits (232), Expect = 1e-17, Method: Composition-based stats.
Identities = 34/232 (14%), Positives = 74/232 (31%), Gaps = 27/232 (11%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT----KHGWITAEYGMLPR 68
++L +++ A + + DT + + +++V + + G +P
Sbjct: 15 VTLETGAIARQATAAVMASMDDTTVFVSVVAKKEVKEGQDFFPLTVDYQERSYAAGKIPG 74
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
R GR I R+I R +R + L QII +
Sbjct: 75 GFFKR------EGRPSEGETLIARLIDRPIRPLFPEGFLNEIQIIATVVSVNPQISPDLV 128
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+ GA A G + A G + +++ E +D
Sbjct: 129 AMIGASAA-------------LALSGVPFNGPIGAARVGFINDQFVLNPTMAEQKQSRLD 175
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
T ++ V+ A+ +++ A + + +I+ K+++
Sbjct: 176 LVVAGT-DKAVLMVESEADI--LTEEQMLAAVVFGHQQQQVVIEAIKELVKE 224
>gi|323350507|ref|ZP_08086169.1| polyribonucleotide nucleotidyltransferase [Streptococcus sanguinis
VMC66]
gi|322123189|gb|EFX94874.1| polyribonucleotide nucleotidyltransferase [Streptococcus sanguinis
VMC66]
Length = 733
Score = 144 bits (363), Expect = 1e-32, Method: Composition-based stats.
Identities = 43/242 (17%), Positives = 80/242 (33%), Gaps = 18/242 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56
+R GR+ +++R + GS L G T L+ T E ++ +
Sbjct: 317 VRPDGRKVDEIRPLDAEVDYLPRVHGSGLFTRGQTQALSVLTLAPMGETQIVDGLDPEYK 376
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y S G + A R+ G RAL V+ I +
Sbjct: 377 KRFMHHYNFPQYSVGETGRYGAPGRREIGHGALG----ERALEQVLPSLEEFPYAIRLVA 432
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V++++G + A+I +AL ++ + + + D
Sbjct: 433 EVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISD---------GSNYTVLTD 483
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T G I +Q + + + L AK +++ L +
Sbjct: 484 IQGLEDHFGDMDFKVAGTREG-ITALQMDIKIEGITAEILTEALAQAKKARFEILDLIEA 542
Query: 237 VI 238
I
Sbjct: 543 TI 544
Score = 113 bits (283), Expect = 2e-23, Method: Composition-based stats.
Identities = 45/231 (19%), Positives = 87/231 (37%), Gaps = 26/231 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKV---PMWIRNTKHGWITAEYGMLP 67
RE+ + V+K A GS +V++G++ +LT AT+ +K+ + + G P
Sbjct: 13 RELVVETGQVAKQANGSAVVRYGESTILTAATMSKKMATGDFFPLQVNYEEKMYAAGKYP 72
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R GR + R+I R +R + + Q+I D +
Sbjct: 73 GGFNKR------EGRPSTDATLTARLIDRPIRPMFEEGFRNEVQVINTVLSYDEDASPQM 126
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
AA+ G+ +A G +A + G + G I++ + +
Sbjct: 127 AAMFGSSLA-------------LSISDIPFNGPIAGVQVGYVDGEFIINPSKEQKEISLL 173
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
+ T I V+ A+ S+D L + + +LI Q++++
Sbjct: 174 ELTVAGTKE-AINMVESGAKE--LSEDIMLEALLKGHEAVKELIAFQEEIV 221
>gi|187610335|sp|Q9RSR1|PNP_DEIRA RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
Length = 779
Score = 144 bits (363), Expect = 1e-32, Method: Composition-based stats.
Identities = 46/243 (18%), Positives = 88/243 (36%), Gaps = 18/243 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKH---- 56
+R GR +R I + R A GS + G+T +L TL + + +
Sbjct: 318 LRADGRDSKTVRPIWIEARPLPTAHGSAVFTRGETQVLGVTTLGTERDEILIDDLTAESG 377
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P STG + S R+ G RA+R+V+ I +
Sbjct: 378 DKFLLHYNFPPYSTGEVKRMGGQSRREIGHGNL----AKRAIRAVLPSFEEFPYVIRVVG 433
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
DV++++G + + ++L D ++ + V++G + D
Sbjct: 434 DVLESNGSSSMGTVCAGTLSLMDAGVPLKAPVAGVAMGLVMEGD---------NYRVLTD 484
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED+ D+D T G + +Q + + L AK+ ++ +
Sbjct: 485 ILGLEDALGDMDFKVCGTAEG-VTALQMDIKVGGITPQIMREALAQAKEGRLHILGKMAE 543
Query: 237 VIS 239
V++
Sbjct: 544 VLA 546
Score = 93.4 bits (230), Expect = 2e-17, Method: Composition-based stats.
Identities = 46/229 (20%), Positives = 78/229 (34%), Gaps = 26/229 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEE---KVPMWIRNTKHGWITAEYGMLP 67
RE+S+ ++K GS V++GDT LL TA + K+ + G +P
Sbjct: 13 RELSIETGKLAKLVSGSVTVRYGDTLLLVTAQASDTQSKLDFLPLTVEFEERHYAVGKIP 72
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
S R GR G ++ R+ R +R + Q+II
Sbjct: 73 GSFQRR------EGRPGEKAILSARITDRQIRPLFPKGYRHETQVIITVLSADGQNAPDV 126
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
GA A G A + G + G +V+ + + +
Sbjct: 127 LGPIGAAAA-------------LSISDIPWAGPTACVRVGQIDGQYVVNPTTEQLTRSRM 173
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
D T ++ V+ A+ T S+D + A + +I L +
Sbjct: 174 DLVVAGTRE-AVMMVECGAQ--TVSEDDLVGAIEFAHAEMQGVIALIEQ 219
>gi|76788173|ref|YP_328934.1| polynucleotide phosphorylase/polyadenylase [Streptococcus
agalactiae A909]
gi|76799250|ref|ZP_00781422.1| polyribonucleotide nucleotidyltransferase [Streptococcus agalactiae
18RS21]
gi|77405356|ref|ZP_00782451.1| polyribonucleotide nucleotidyltransferase [Streptococcus agalactiae
H36B]
gi|77410940|ref|ZP_00787296.1| polyribonucleotide nucleotidyltransferase [Streptococcus agalactiae
CJB111]
gi|123602514|sp|Q3K3G9|PNP_STRA1 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|76563230|gb|ABA45814.1| polyribonucleotide nucleotidyltransferase [Streptococcus agalactiae
A909]
gi|76585403|gb|EAO61989.1| polyribonucleotide nucleotidyltransferase [Streptococcus agalactiae
18RS21]
gi|77162995|gb|EAO73950.1| polyribonucleotide nucleotidyltransferase [Streptococcus agalactiae
CJB111]
gi|77176034|gb|EAO78808.1| polyribonucleotide nucleotidyltransferase [Streptococcus agalactiae
H36B]
Length = 709
Score = 144 bits (363), Expect = 1e-32, Method: Composition-based stats.
Identities = 42/244 (17%), Positives = 79/244 (32%), Gaps = 18/244 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56
+R GR+ +++R + GS L G T L+ T E ++ +
Sbjct: 317 IRPDGRRVDEIRPLDAEIDFLPQVHGSGLFTRGQTQALSVLTLAPMGEAQIIDGLTPEYK 376
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y S G + A R+ G RAL V+ I +
Sbjct: 377 KRFMHHYNFPQYSVGETGRYGAAGRREIGHGALG----ERALEQVLPSLEEFPYAIRLVA 432
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V++++G + A+I +AL ++ + + + D
Sbjct: 433 EVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISD---------GTNYTVLTD 483
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T G I +Q + + L AK +++ +
Sbjct: 484 IQGLEDHFGDMDFKVAGTREG-ITALQMDIKIEGITPQILEEALAQAKKARFEILDVLHG 542
Query: 237 VISN 240
I+
Sbjct: 543 AIAE 546
Score = 102 bits (253), Expect = 5e-20, Method: Composition-based stats.
Identities = 41/230 (17%), Positives = 82/230 (35%), Gaps = 26/230 (11%)
Query: 13 EISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKV---PMWIRNTKHGWITAEYGMLPR 68
++ + V+K A GS +V++GD+ +LT A + +K+ + + G P
Sbjct: 14 KLVVETGQVAKQANGSVVVRYGDSTVLTAAVMSKKMSTGDFFPLQVNYEEKMYAAGKFPG 73
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
R GR + R+I R +R + Q+I + A
Sbjct: 74 GFNKR------EGRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSFDENASAPMA 127
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+ G+ +A G +A + + G I++ E ++
Sbjct: 128 AMFGSSLA-------------LSISDIPFNGPIAGVQVAYVDGNFIINPTAQEQEASALE 174
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
T I V+ A+ S++ L + + +LI Q++++
Sbjct: 175 LTVAGTKE-AINMVESGAKE--LSEEIMLEALLKGHEAVCELIAFQEEIV 221
>gi|315104236|gb|EFT76212.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes
HL050PA2]
Length = 733
Score = 144 bits (363), Expect = 1e-32, Method: Composition-based stats.
Identities = 45/242 (18%), Positives = 85/242 (35%), Gaps = 13/242 (5%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
+R+ GR +R +S + GS L + G+T +L +TL E+ +
Sbjct: 339 VRIDGRGPRDIRSLSAEVGIIPRVHGSALFQRGETQILGVSTLNMLDMEQKLDTLSPENT 398
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y M P STG + + R+ G RAL V+ I
Sbjct: 399 RRYMHNYNMPPYSTGETGRVGSPKRREIGHGNL----AERALIPVLPTREEFPYAIREVS 454
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+ I ++G T ++ + +AL + + + + + G + D
Sbjct: 455 EAIGSNGSTSMGSVCASTLALLNAGVPLRASVAGIAMGLMSETDE----DGKTKYRALTD 510
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED+ D+D T + +Q + D L AK+ ++++ +
Sbjct: 511 ILGAEDALGDMDFKVAGTSEF-VTALQLDTKLDGIPADVLAGALKQAKEARTAILEVMNE 569
Query: 237 VI 238
I
Sbjct: 570 AI 571
Score = 73.0 bits (177), Expect = 4e-11, Method: Composition-based stats.
Identities = 38/249 (15%), Positives = 72/249 (28%), Gaps = 40/249 (16%)
Query: 14 ISLTRRV-SKYAEGSCLVKF-GDTHLLTTATLE----EKVPMWIRNTKHGWITAEYGMLP 67
+ + ++ A+GS V GDT LL+ T + + + G +P
Sbjct: 23 VRFEAGLLAQQADGSAAVYLDGDTMLLSATTAAKTPRDSIDFFPLTVDVEERMYAAGRIP 82
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
S R GR + R+I R LR Q+++ +
Sbjct: 83 GSFFRR------EGRPSEGAILACRLIDRPLRPSFVKGLRNEVQVVVTVMALNPAVYYDV 136
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
AI A ++ G V + ++ + +
Sbjct: 137 VAINSASMSTQLAG-------------LPFSGPVGGVRMALIDDQWVCFPSVDQRKESTF 183
Query: 188 DANFVMT----DSGHIVEVQGSAERATF----------SQDHFFAMLNLAKDRIADLIKL 233
D I+ V+ + AT+ +++ L AK I L
Sbjct: 184 DMVVAGRALADGDVAIMMVEAESTPATWGLVRGGRTAPTEEVVATGLEAAKPFIKVLCDA 243
Query: 234 QKDVISNEV 242
Q ++ ++
Sbjct: 244 QV-ALAAKL 251
>gi|261868717|ref|YP_003256639.1| polynucleotide phosphorylase/polyadenylase [Aggregatibacter
actinomycetemcomitans D11S-1]
gi|261414049|gb|ACX83420.1| polyribonucleotide nucleotidyltransferase
(Polynucleotidephosphorylase) (PNPase) [Aggregatibacter
actinomycetemcomitans D11S-1]
Length = 743
Score = 144 bits (363), Expect = 1e-32, Method: Composition-based stats.
Identities = 42/241 (17%), Positives = 87/241 (36%), Gaps = 18/241 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR + +R + + V GS + G+T L ATL + ++ + +
Sbjct: 348 RIDGRTVDTVRALDICTGVLPRTHGSAIFTRGETQALAVATLGTERDAQIIDELTGERSD 407
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + R+ G + R + +V+ A + + +
Sbjct: 408 HFLFHYNFPPYSVGETGMIGSPKRREIGHGRL----AKRGVAAVMPTLAEFPYVVRVVSE 463
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ GA +AL D ++ + V + + +
Sbjct: 464 ITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEEDKFVVLSD---------I 514
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T G + +Q + + + LN AK ++ + +
Sbjct: 515 LGDEDHLGDMDFKVAGTREG-VTALQMDIKIEGITAEIMQIALNQAKSARMHILGVMEQA 573
Query: 238 I 238
I
Sbjct: 574 I 574
Score = 93.4 bits (230), Expect = 2e-17, Method: Composition-based stats.
Identities = 34/232 (14%), Positives = 74/232 (31%), Gaps = 27/232 (11%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----HGWITAEYGMLPR 68
++L +++ A + + DT + T ++ V + T G +P
Sbjct: 49 VTLETGAIARQATAAVMASMDDTTVFVTVVAKKDVKEGQDFFPLTVNYQERTYAAGRIPG 108
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
R GR I R+I R +R + Q++ +
Sbjct: 109 GFFKR------EGRPSEGETLIARLIDRPIRPLFPEGFFNEIQVVATVVSVNPQISPDLV 162
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+ GA A G + A G + G +++ E +D
Sbjct: 163 AMIGASAA-------------LSLSGVPFNGPIGAARVGFINGQFVLNPTMNEQKQSRLD 209
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
T ++ V+ A+ +++ A + + +I+ K++++
Sbjct: 210 LVVAGT-DKAVLMVESEADI--LTEEQMLAAVVYGHQQQQVVIEAIKELVAE 258
>gi|257096732|sp|B2S1E9|PNP_BORHD RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
Length = 717
Score = 144 bits (363), Expect = 1e-32, Method: Composition-based stats.
Identities = 44/244 (18%), Positives = 86/244 (35%), Gaps = 19/244 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
+R GR Q+R+I + K GS L G+T L TL +E++ I K
Sbjct: 315 LRTDGRTSTQIRDIVAEVDLLKRTHGSSLFTRGETQALAVTTLGTSIDEQIMDDIDGDKR 374
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P S G + R+ G R+L +++ I +
Sbjct: 375 LNFMLHYNFPPFSVGETGRLMTGR-REVGHGHL----AQRSLEAMLPKKDDFPYTIRVVS 429
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
++++++G + A + ++L +++ + + G +
Sbjct: 430 EILESNGSSSMATVCSGSMSLMAAGVPVKEQVAGIAMGLISDGDKYVVLSD--------- 480
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T +G I Q + + ++ L A+ ++ +
Sbjct: 481 ILGEEDHLGDMDFKVAGTKNG-ITGFQMDIKISNVTKQLMKDALEQARIGRMHILSIMDS 539
Query: 237 VISN 240
VIS
Sbjct: 540 VISR 543
Score = 102 bits (254), Expect = 4e-20, Method: Composition-based stats.
Identities = 43/240 (17%), Positives = 83/240 (34%), Gaps = 32/240 (13%)
Query: 5 GRQENQMREISLTRRV-SKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----HGWI 59
GR+ ++ L + +K A G+ L +G + +L T + V + +
Sbjct: 10 GRE-----DLILETGLLAKQANGAVLATYGGSTVLATVCCSDSVRENLDFVPLSVEYNEK 64
Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119
G +P R G+ + + R+I R +R + D Q++
Sbjct: 65 YYAAGKIPGGFIKR------EGKPKDKEVLVSRLIDRPMRPLFDKRFGREIQVVPTTLST 118
Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179
+ A+ A+ G +AA+ L IV+ +
Sbjct: 119 DQMNPPDIVGMNAAFAAVF-------------LSDIPFNGPIAAVRLAYLNNEFIVNPSF 165
Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
E +D + G I V+G A S++ + ++ A + I + LQK+ +S
Sbjct: 166 DEIQDSILDIVVAGSLDG-ITMVEGGANE--VSEEVLLSAIDKAYEYIKQICNLQKEFVS 222
>gi|257063808|ref|YP_003143480.1| polyribonucleotide nucleotidyltransferase (polynucleotide
phosphorylase) [Slackia heliotrinireducens DSM 20476]
gi|256791461|gb|ACV22131.1| polyribonucleotide nucleotidyltransferase (polynucleotide
phosphorylase) [Slackia heliotrinireducens DSM 20476]
Length = 743
Score = 144 bits (363), Expect = 1e-32, Method: Composition-based stats.
Identities = 45/237 (18%), Positives = 84/237 (35%), Gaps = 18/237 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R GR +++R + + GS L + G T L+ TL E + I
Sbjct: 315 RADGRAADEIRPLYIRPGYLPRVHGSGLFQRGQTQALSVCTLGLLNEAQRLDTIDPATGK 374
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
+Y P TG + A R+ G RA+ V+ I + +
Sbjct: 375 RYMHQYNFPPYCTGEVGRMGAPKRREVGHGAL----AERAILPVLPSEDEFPYAIRVVSE 430
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+++++G + A+ G+ +AL D ++ + + + + I +
Sbjct: 431 ILESNGSSSMASTCGSCLALMDAGVPIKAPVSGIAMGLIKEEDGVVILSD---------I 481
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
ED D+D T +G I +Q + S + L AK+ A ++
Sbjct: 482 QGLEDFLGDMDFKVTGTANG-ITALQMDNKARGLSTEILGRALQQAKEGRAHILNAM 537
Score = 94.9 bits (234), Expect = 8e-18, Method: Composition-based stats.
Identities = 42/228 (18%), Positives = 76/228 (33%), Gaps = 24/228 (10%)
Query: 16 LTRR-VSKYAEGSCLVKFGDTHLLTTATL---EEKVPMWIRNTKHGWITAEYGMLPRSTG 71
++K A G+ LVK G+T +L TA + E+ + G +P
Sbjct: 17 FETGELAKQATGAVLVKQGETTVLVTAVISAQEKDYDFFPLTVDFMEKMYAVGRIPGGYL 76
Query: 72 NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAIT 131
R G+ + RMI R +R ++ I +
Sbjct: 77 KR------EGKASDKGTLTARMIDRPIRPGFADGFKQEVHVVATTFAIDGQNPPDCICVG 130
Query: 132 GAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANF 191
GA AL + + + I+ IV+ Y E T D++
Sbjct: 131 GASAALMIGSAPFDGPAACVR-----------IARNAETKEFIVNPTYEEQETSDLELTI 179
Query: 192 VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
T +I V+ A +++ A +N ++ IA + Q + ++
Sbjct: 180 AGTRD-YISMVEAGANE--VTEEDMLAAMNFGQEAIAAFCEKQAEFLA 224
>gi|253991498|ref|YP_003042854.1| polynucleotide phosphorylase/polyadenylase [Photorhabdus
asymbiotica subsp. asymbiotica ATCC 43949]
gi|211638376|emb|CAR66998.1| polyribonucleotide nucleotidyltransferase (ec 2.7.7.8)
(polynucleotid phosphorylase) (pnpase) (cap87k)
[Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949]
gi|253782948|emb|CAQ86113.1| polyribonucleotide nucleotidyltransferase [Photorhabdus
asymbiotica]
Length = 708
Score = 144 bits (363), Expect = 1e-32, Method: Composition-based stats.
Identities = 43/242 (17%), Positives = 93/242 (38%), Gaps = 18/242 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR+++ +R + + V GS L G+T L TATL + ++ + +
Sbjct: 315 RIDGREKDMVRALDVRTGVLPRTHGSALFTRGETQALVTATLGTERDAQIIDELMGERTD 374
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + R+ G + R + +V+ + + + +
Sbjct: 375 RFLLHYNFPPYSVGETGMIGSPKRREIGHGRL----AKRGVLAVMPKANEFPYTVRVVSE 430
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ GA +AL D ++ + V +G + +
Sbjct: 431 ITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNFVVLSD---------I 481
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D + G + +Q + +++ LN AK ++ + +
Sbjct: 482 LGDEDHLGDMDFKVAGSREG-VSALQMDIKIEGITREIMQVALNQAKGARLHILSVMEQA 540
Query: 238 IS 239
I+
Sbjct: 541 IN 542
Score = 91.1 bits (224), Expect = 1e-16, Method: Composition-based stats.
Identities = 39/232 (16%), Positives = 77/232 (33%), Gaps = 27/232 (11%)
Query: 14 ISLTRRV-SKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----HGWITAEYGMLPR 68
I++ + ++ A + +V DT + T ++KV + T G +P
Sbjct: 16 IAIETGMMARQATAAVMVNMDDTAVFVTVVGQKKVKAGQDFFPLTVNYQERTYAAGRVPG 75
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
S R GR G + R+I R LR + L QI+ +
Sbjct: 76 SFFRR------EGRPGEGETLVARLIDRPLRPLFPEGFLNEVQIVATVVSVNPQVNPDIV 129
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+ GA A G + A G + +++ E +D
Sbjct: 130 AMIGASAA-------------LALSGIPFNGPIGAARVGYINDQYVLNPTSDELKNSRLD 176
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
T +G ++ V+ +E +++ + D+ +I +++
Sbjct: 177 LVVSGT-AGAVLMVE--SEADLLTEEQMLGAVVFGHDQQQVVIDNINALVAE 225
>gi|290579654|ref|YP_003484046.1| polyribonucleotide nucleotidyltransferase [Streptococcus mutans
NN2025]
gi|254996553|dbj|BAH87154.1| polyribonucleotide nucleotidyltransferase [Streptococcus mutans
NN2025]
Length = 730
Score = 144 bits (363), Expect = 1e-32, Method: Composition-based stats.
Identities = 42/242 (17%), Positives = 80/242 (33%), Gaps = 18/242 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56
+R GR+ +++R + GS L G T L+ T + ++ +
Sbjct: 317 VRPDGRRVDEIRPLDAEIDFLPKVHGSGLFTRGQTQALSVLTLAPMGDTQIVDGLDEEYK 376
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y S G + A R+ G RAL V+ I +
Sbjct: 377 KRFMHHYNFPQYSVGETGRYGAPGRREIGHGALG----ERALAQVLPSLEAFPYAIRLVA 432
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V++++G + A+I +AL ++ + + + D
Sbjct: 433 EVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISD---------GTNYTVLTD 483
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T G I +Q + + L AK +++ + +
Sbjct: 484 IQGLEDHFGDMDFKVAGTREG-ITALQMDIKIEGITPQILEEALAQAKKARFEILDVIEK 542
Query: 237 VI 238
VI
Sbjct: 543 VI 544
Score = 104 bits (258), Expect = 1e-20, Method: Composition-based stats.
Identities = 44/231 (19%), Positives = 85/231 (36%), Gaps = 26/231 (11%)
Query: 13 EISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKV---PMWIRNTKHGWITAEYGMLPR 68
++++ V+K A G+ LV++GD+ +L+ A + +K+ + + G P
Sbjct: 14 KLAVEIGQVAKQANGAALVRYGDSTVLSAAVMSKKMSTGDFFPLQINYEEKRYAAGKFPG 73
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
R GR + R+I R +R + Q+I AD A
Sbjct: 74 GFNKR------EGRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDADASAPMA 127
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+ G+ +A G +A + L G +++ E ++
Sbjct: 128 AMFGSSLA-------------LSISDIPFNGPIAGVQVAYLDGQYVINPTAEEKKASLLE 174
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
T I V+ A+ S+D L + + +LI Q+++I+
Sbjct: 175 LTVAGTKE-AINMVESGAKE--LSEDIMLEALLKGHEAVRELIAFQEEIIA 222
>gi|291287262|ref|YP_003504078.1| polyribonucleotide nucleotidyltransferase [Denitrovibrio
acetiphilus DSM 12809]
gi|290884422|gb|ADD68122.1| polyribonucleotide nucleotidyltransferase [Denitrovibrio
acetiphilus DSM 12809]
Length = 711
Score = 144 bits (363), Expect = 1e-32, Method: Composition-based stats.
Identities = 50/233 (21%), Positives = 86/233 (36%), Gaps = 9/233 (3%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R+ GR +R+I + R+ A GS L G+T L ATL K I +T +G
Sbjct: 320 RIDGRSYTDIRDIDIETRLLPMAHGSGLFTRGETQALVVATLGTKTDTQILDTIYGDGKK 379
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
+ + V G R + R+L V+ + I I +V+++
Sbjct: 380 RFMLHYNFPPFCVGEVGFLRGPGRREIGHGALAERSLAQVLPDADDFPYTIRIVSEVLES 439
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
+G + A + G +AL D ++ + + + G + D+ E
Sbjct: 440 NGSSSMATVCGGCLALMDAGVPIKSPVAGVAMGLIYE--------GADRFAVLSDILGTE 491
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
D D+D T G I +Q + SQ+ L AK+ ++
Sbjct: 492 DHLGDMDFKVTGTKDG-ITALQMDIKIEGLSQELLETALGQAKEARMYILGKM 543
Score = 104 bits (260), Expect = 9e-21, Method: Composition-based stats.
Identities = 46/232 (19%), Positives = 73/232 (31%), Gaps = 27/232 (11%)
Query: 13 EISLTRRV-SKYAEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTKHGWITAEYGMLP 67
E+ +K A GS +K G T +L TA T E + + G +P
Sbjct: 18 EMIFETGWKAKQANGSIWMKQGGTVVLVTAAGKKTASENQGFFPLTVNYIEKFYAAGKIP 77
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R + R+I R LR + Q+I
Sbjct: 78 GGFFKR------EAKPTDNETLTSRLIDRPLRPMFPDGFRNETQVIAHVVSYDGVNSPDM 131
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
A+ GA AL G +A + G L G I++ +D+
Sbjct: 132 LAMNGASAALM-------------ISDIPFNGPIAGVRVGRLDGKLIINPPADRLEELDM 178
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
+ T IV V+ A + S+ L D I L+ Q ++++
Sbjct: 179 NIILAGT-DDAIVMVE--AGMSVVSEAEVIEALQFGHDNIKKLVAKQNEMVA 227
>gi|260584718|ref|ZP_05852464.1| polyribonucleotide nucleotidyltransferase [Granulicatella elegans
ATCC 700633]
gi|260157741|gb|EEW92811.1| polyribonucleotide nucleotidyltransferase [Granulicatella elegans
ATCC 700633]
Length = 701
Score = 144 bits (363), Expect = 1e-32, Method: Composition-based stats.
Identities = 45/244 (18%), Positives = 88/244 (36%), Gaps = 18/244 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56
+R GR+ +++R +S + GS L G T LT+AT E +V + +
Sbjct: 318 VRPDGRKIDEIRPLSSEIDLLPRVHGSGLFTRGQTQALTSATLAPLGEYQVIDGLGIEEG 377
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y S G+ + + R+ G RAL+ V+ I +
Sbjct: 378 KRFIHHYNFPQFSVGSVGRAGSPGRREIGHGALG----ERALKQVIPTPEDFPYTIRLVS 433
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V++++G + A+I +AL ++ + + + D
Sbjct: 434 EVLESNGSSSQASICAGTLALMAAGVPIKAPVAGIAMGLISD---------GTNYTVLTD 484
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T +G I +Q + ++ L AK ++++
Sbjct: 485 IQGLEDHLGDMDFKVAGTTTG-ITALQMDIKIQGITEQILREALTQAKKARFEILEELTS 543
Query: 237 VISN 240
I+
Sbjct: 544 TIAE 547
Score = 111 bits (278), Expect = 6e-23, Method: Composition-based stats.
Identities = 43/233 (18%), Positives = 85/233 (36%), Gaps = 26/233 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEK---VPMWIRNTKHGWITAEYGMLP 67
R + + ++K A G+ LV++GDT +LT A ++ + + G +P
Sbjct: 14 RLLQVEIGQLAKQANGAVLVRYGDTVVLTAAVGTKQAKDTDFFPLTVNYEEKMYAAGKIP 73
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R GR + R+I R +R + QI + +
Sbjct: 74 GGFIKR------EGRPSEHATLTARLIDRPIRPMFAEGFRNEVQITNTVMSVDPNCPPEM 127
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
AA+ G+ +AL G +A + G + G +++ + D+
Sbjct: 128 AAMFGSSLALC-------------ISDIPFDGPIAGVDVGRVNGEYVINPTTEQAELSDI 174
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
+ + T + I V+ SA+ S++ L + I L+ Q+ ++
Sbjct: 175 ELSVAGTAT-AINMVESSAKE--VSEEDMLGALLFGHEEIKKLVAFQQQIVQE 224
>gi|325955410|ref|YP_004239070.1| polyribonucleotide nucleotidyltransferase [Weeksella virosa DSM
16922]
gi|323438028|gb|ADX68492.1| Polyribonucleotide nucleotidyltransferase [Weeksella virosa DSM
16922]
Length = 721
Score = 144 bits (362), Expect = 1e-32, Method: Composition-based stats.
Identities = 44/243 (18%), Positives = 80/243 (32%), Gaps = 18/243 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRN----TKH 56
+RL GR +R I + A GS + G+T L TL + +
Sbjct: 320 IRLDGRDPKTIRPIWTEVDILPGAHGSSVFTRGETQALAALTLGSSRDANLVDGVVLNHE 379
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P STG S R+ G RAL ++ I +
Sbjct: 380 ERFFLHYNFPPFSTGEARPLRGTSRREIGHGNL----AQRALTKMIP--EDNPYVIRLVS 433
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V++++G + A + +AL D ++ + + + + D
Sbjct: 434 EVLESNGSSSMATVCAGTLALMDAGIPIKKPVSGIAMGLITDTKSG-------KWTVLSD 486
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T G I Q + S + L A++ ++ +
Sbjct: 487 ILGDEDHLGDMDFKVTGTKDG-ITACQMDIKVQGLSMEIMEKALEQAREGRLHILDKLTE 545
Query: 237 VIS 239
++
Sbjct: 546 TLA 548
Score = 106 bits (263), Expect = 4e-21, Method: Composition-based stats.
Identities = 41/241 (17%), Positives = 73/241 (30%), Gaps = 29/241 (12%)
Query: 7 QENQMREISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITA 61
REIS+ +K A+GS +V+ GDT LL T E V +
Sbjct: 11 TLQDGREISIETGKYAKQADGSVIVRMGDTMLLATVVANKEANEGVDFLPLTVDYREKFY 70
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
G +P + R + R++ R LR + Q++I
Sbjct: 71 AGGRIPGNFFRR------EAKPSDDEVLTMRLVDRVLRPMFPEDFHAEVQVMISLISYDE 124
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
A A A+ S + + +++ +
Sbjct: 125 KVMPEALAGLAASAAIAITDIPFTLISEARVIRLNGE--------------LMINPSREQ 170
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
D+D +V V+ E S+ + A + I I+ Q + ++ +
Sbjct: 171 LEQADIDIMV-GASKESVVMVE--GEMEEISEREMLDAIQFAHEEIKKQIEAQ-ERLAEK 226
Query: 242 V 242
V
Sbjct: 227 V 227
>gi|261416773|ref|YP_003250456.1| polyribonucleotide nucleotidyltransferase [Fibrobacter succinogenes
subsp. succinogenes S85]
gi|261373229|gb|ACX75974.1| polyribonucleotide nucleotidyltransferase [Fibrobacter succinogenes
subsp. succinogenes S85]
gi|302327483|gb|ADL26684.1| polyribonucleotide nucleotidyltransferase [Fibrobacter succinogenes
subsp. succinogenes S85]
Length = 744
Score = 144 bits (362), Expect = 1e-32, Method: Composition-based stats.
Identities = 40/240 (16%), Positives = 84/240 (35%), Gaps = 13/240 (5%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTH--LLTT--ATLEEKVPMWIRNTKH 56
+RL GR ++R I + V A GS + + G+T ++ T +E+ ++
Sbjct: 338 VRLDGRTTTEVRPIEIEMGVLPRAHGSAIFQRGETQGLVICTLGTKADEQRFESLQGEGA 397
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P S G R + R+L +V+ L I +
Sbjct: 398 KSYMLHYNFPPFSVGE-----CKKLGLSRREIGHGHLAERSLAAVLPLPEDFPYTIRVVS 452
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
++++++G + A++ G ++L D ++ + + + + D
Sbjct: 453 EIMESNGSSSMASVCGGCLSLMDAGVPIKAPVAGIAMGLISEK---GSVKEGGKIKILSD 509
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T G I Q + + + L A+ ++ +
Sbjct: 510 ITGTEDHLGDMDFKVTGTAEG-ITAFQMDIKIRGITPELMREALEQARQGRIHILGRMAE 568
Score = 96.5 bits (238), Expect = 3e-18, Method: Composition-based stats.
Identities = 44/239 (18%), Positives = 83/239 (34%), Gaps = 30/239 (12%)
Query: 3 LSGRQENQMREISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKV--PMWIRNTKHGWI 59
GR I+ ++K A GS + K GD +L+T E+ + ++
Sbjct: 24 PDGRV------ITFETGRIAKQARGSAVAKMGDAFVLSTVCYGEEKDGDFFPLTVEYREK 77
Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119
+ G LP R GR R+I R +R + + Q+I+
Sbjct: 78 SYAAGRLPGGYSKREP-----GRPSDEEILSARIIDRPIRPMFPENFTREVQVIVQVLSS 132
Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179
++ A ++ + VAA+ ++ G IV Y
Sbjct: 133 DKKFAPDVLGVSAASLS-------------IGLSELPFEQQVAAVRVAVVDGQNIVMPTY 179
Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
+ + D+D T+ + V+G A S+D + + I + K Q++++
Sbjct: 180 DQVAVADLDLVVAGTED-SVCMVEGGAYE--VSEDTMIGAILAGHEVIKQMCKAQQELV 235
>gi|255325195|ref|ZP_05366301.1| polyribonucleotide nucleotidyltransferase [Corynebacterium
tuberculostearicum SK141]
gi|255297760|gb|EET77071.1| polyribonucleotide nucleotidyltransferase [Corynebacterium
tuberculostearicum SK141]
Length = 748
Score = 144 bits (362), Expect = 1e-32, Method: Composition-based stats.
Identities = 45/242 (18%), Positives = 90/242 (37%), Gaps = 14/242 (5%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKH 56
R+ GR +R++S+ + A GS L + G+T +L TL+ E+ + +
Sbjct: 364 FRIDGRGVTDIRDLSVEVDLVPRAHGSSLFERGETQILGVTTLDMLKMEQQIDSLTPVES 423
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P STG + + R+ G RAL V+ I
Sbjct: 424 KRYMHHYNFPPFSTGETGRVGSPKRREIGHGAL----AERALLPVIPSREDFPYAIRQVS 479
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+ + ++G T ++ + ++L++ ++ + V + G + D
Sbjct: 480 EALGSNGSTSMGSVCASTLSLYNAGVPLKAPVAGIAMGLV-----SGEVNGKEKFVALTD 534
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED+ D+D T +I +Q + L A+D + +++ +
Sbjct: 535 ILGAEDAFGDMDFKVAGTSE-YITALQLDTKLDGIPSKVLAQALEQARDARSTILETMAE 593
Query: 237 VI 238
VI
Sbjct: 594 VI 595
Score = 74.1 bits (180), Expect = 2e-11, Method: Composition-based stats.
Identities = 39/241 (16%), Positives = 65/241 (26%), Gaps = 24/241 (9%)
Query: 12 REISLTRR-VSKYAEGSCLVKF-GDTHLLTTATLE----EKVPMWIRNTKHGWITAEYGM 65
R + +++ A+GS DT LL T T E + G
Sbjct: 32 RTLRFETGQLARQADGSVTTYLDDDTMLLATTTASNQPREGFDFFPLTVDVEERMYAAGK 91
Query: 66 LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125
+P S R GR + R+I R LR Q+++ +
Sbjct: 92 IPGSFFRR------EGRPSSEAILACRLIDRPLRPTFVKGLRNEVQVVVTVMSQDPEEYY 145
Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185
AI GA A + +++ + + + +
Sbjct: 146 DVVAINGASAATQLSGLPVSGAVGGVRMALIAD-DKHPEGQWVAFPNHEQHERALFEMVV 204
Query: 186 DVDANFVMTDSG-HIVEVQGS---------AERATFSQD-HFFAMLNLAKDRIADLIKLQ 234
I+ V+ A+ A Q+ L AK I L + Q
Sbjct: 205 AGRIVKKGRKDDVAIMMVEAGAGTNVAERIADGAPAPQEAAVAEGLEAAKPFIKTLCEAQ 264
Query: 235 K 235
Sbjct: 265 N 265
>gi|282854618|ref|ZP_06263953.1| guanosine pentaphosphate synthetase I/polyribonucleotide
nucleotidyltransferase [Propionibacterium acnes J139]
gi|282582200|gb|EFB87582.1| guanosine pentaphosphate synthetase I/polyribonucleotide
nucleotidyltransferase [Propionibacterium acnes J139]
gi|314923878|gb|EFS87709.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes
HL001PA1]
gi|314966065|gb|EFT10164.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes
HL082PA2]
gi|314981898|gb|EFT25991.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes
HL110PA3]
gi|315090762|gb|EFT62738.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes
HL110PA4]
gi|315095011|gb|EFT66987.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes
HL060PA1]
gi|327328056|gb|EGE69825.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes
HL103PA1]
Length = 733
Score = 144 bits (362), Expect = 1e-32, Method: Composition-based stats.
Identities = 45/242 (18%), Positives = 85/242 (35%), Gaps = 13/242 (5%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
+R+ GR +R +S + GS L + G+T +L +TL E+ +
Sbjct: 339 VRIDGRGPRDIRSLSAEVGIIPRVHGSALFQRGETQILGVSTLNMLDMEQKLDTLSPENT 398
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y M P STG + + R+ G RAL V+ I
Sbjct: 399 RRYMHNYNMPPYSTGETGRVGSPKRREIGHGNL----AERALIPVLPTREEFPYAIREVS 454
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+ I ++G T ++ + +AL + + + + + G + D
Sbjct: 455 EAIGSNGSTSMGSVCASTLALLNAGVPLRASVAGIAMGLMSETDE----DGKTKYRALTD 510
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED+ D+D T + +Q + D L AK+ ++++ +
Sbjct: 511 ILGAEDALGDMDFKVAGTSEF-VTALQLDTKLDGIPADVLAGALKQAKEARTAILEVMNE 569
Query: 237 VI 238
I
Sbjct: 570 AI 571
Score = 73.3 bits (178), Expect = 3e-11, Method: Composition-based stats.
Identities = 38/249 (15%), Positives = 72/249 (28%), Gaps = 40/249 (16%)
Query: 14 ISLTRRV-SKYAEGSCLVKF-GDTHLLTTATLE----EKVPMWIRNTKHGWITAEYGMLP 67
+ + ++ A+GS V GDT LL+ T + + + G +P
Sbjct: 23 VRFEAGLLAQQADGSAAVYLDGDTMLLSATTAAKTPRDSIDFFPLTVDVEERMYAAGRIP 82
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
S R GR + R+I R LR Q+++ +
Sbjct: 83 GSFFRR------EGRPSEGAILACRLIDRPLRPSFVKGLRNEVQVVVTVMALNPAVYYDV 136
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
AI A ++ G V + ++ + +
Sbjct: 137 VAINAASMSTQLAG-------------LPFSGPVGGVRMALIDDQWVCFPSVDQRKESTF 183
Query: 188 DANFVMT----DSGHIVEVQGSAERATF----------SQDHFFAMLNLAKDRIADLIKL 233
D I+ V+ + AT+ +++ L AK I L
Sbjct: 184 DMVVAGRALADGDVAIMMVEAESTPATWGLVRGGRTAPTEEVVATGLEAAKPFIKVLCDA 243
Query: 234 QKDVISNEV 242
Q ++ ++
Sbjct: 244 QV-ALAAKL 251
>gi|261342610|ref|ZP_05970468.1| polyribonucleotide nucleotidyltransferase [Enterobacter
cancerogenus ATCC 35316]
gi|288315257|gb|EFC54195.1| polyribonucleotide nucleotidyltransferase [Enterobacter
cancerogenus ATCC 35316]
Length = 711
Score = 144 bits (362), Expect = 1e-32, Method: Composition-based stats.
Identities = 44/242 (18%), Positives = 92/242 (38%), Gaps = 18/242 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR+++ +R + + V GS L G+T L TATL + + + +
Sbjct: 315 RIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQNIDELMGERTD 374
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + R+ G + R + +V+ + + + +
Sbjct: 375 SFLFHYNFPPYSVGETGMVGSPKRREIGHGRL----AKRGVLAVMPEADKFPYTVRVVSE 430
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ GA +AL D ++ + V +G + +
Sbjct: 431 ITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNFVVLSD---------I 481
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D + G I +Q + +++ LN AK ++ + +
Sbjct: 482 LGDEDHLGDMDFKVAGSREG-ISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQA 540
Query: 238 IS 239
I+
Sbjct: 541 IN 542
Score = 93.8 bits (231), Expect = 2e-17, Method: Composition-based stats.
Identities = 39/233 (16%), Positives = 75/233 (32%), Gaps = 31/233 (13%)
Query: 14 ISLTRRV-SKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----HGWITAEYGMLPR 68
++L + ++ A + +V DT + T ++K + T G +P
Sbjct: 16 VTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVNYQERTYAAGKIPG 75
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
R GR I R+I R +R + + Q+I +
Sbjct: 76 GFFRR------EGRPSEGETLIARLIDRPVRPLFPEGFVNEVQVIATVVSVNPQVNPDIV 129
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+ GA A G + A G + +++ E +D
Sbjct: 130 AMIGASAA-------------LSLSGIPFNGPIGAARVGYINDQYVLNPTQEELKESKLD 176
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR----IADLIKLQKDV 237
T++ ++ V+ AE S+D + D+ I ++ L K+
Sbjct: 177 LVVAGTEA-AVLMVESEAEL--LSEDQMLGAVVFGHDQQQIVIQNINDLVKEA 226
>gi|209525615|ref|ZP_03274153.1| Polyribonucleotide nucleotidyltransferase [Arthrospira maxima
CS-328]
gi|209493948|gb|EDZ94265.1| Polyribonucleotide nucleotidyltransferase [Arthrospira maxima
CS-328]
Length = 720
Score = 144 bits (362), Expect = 1e-32, Method: Composition-based stats.
Identities = 50/246 (20%), Positives = 88/246 (35%), Gaps = 19/246 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSK-YAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTK 55
+R+ GR +Q+R +S + GS L G T +L+ AT + + +
Sbjct: 323 VRVDGRNLDQVRPVSCRVGLLPKRVHGSGLFNRGLTQVLSIATLGTPGDAQDLDDLHPQD 382
Query: 56 HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115
Y P S G + R+ G RAL V+ I I
Sbjct: 383 EKRYMHHYNFPPYSVGETRPMRSPGRREIGHGAL----AERALLPVLPSKEQFPYVIRIV 438
Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIV 175
+V+ ++G T ++ G+ +AL D + + + + +G +
Sbjct: 439 SEVLSSNGSTSMGSVCGSTLALMDAGVPIVKPVSGAAMGLIKEGSEV---------RILT 489
Query: 176 DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
D+ ED D+D TDSG I +Q + S D + AK +++
Sbjct: 490 DIQGIEDFLGDMDFKVAGTDSG-ITALQMDMKITGLSLDVVADAIAKAKPARLHILEKML 548
Query: 236 DVISNE 241
+V+
Sbjct: 549 EVLPKH 554
Score = 95.7 bits (236), Expect = 5e-18, Method: Composition-based stats.
Identities = 50/235 (21%), Positives = 84/235 (35%), Gaps = 26/235 (11%)
Query: 10 QMREISLTRRV-SKYAEGSCLVKFGDTHLLTTAT---LEEKVPMWIRNTKHGWITAEYGM 65
R+I L + + A G+ LV+ GDT +L TAT + + G
Sbjct: 11 DGRDIRLKIGLLAPQAGGALLVESGDTSVLVTATRAEGRPGIDFLPLLVDYEERLYAGGR 70
Query: 66 LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125
+P R GR R R+I R LR ++ QI+ +
Sbjct: 71 IPGGFLRR------EGRPPDRVTLTSRLIDRPLRPLIPGWIRDDIQIVATTLSMDEQVPP 124
Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185
A+TGA VA+ +AA+ G++ I++ Y E
Sbjct: 125 DVLAVTGASVAVLLARIPFYG-------------PMAAVRVGLVGDDFIINPTYKEIRNG 171
Query: 186 DVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
D+D + G +V V+ A + ++ + + DLIK Q +++
Sbjct: 172 DLDLVVAGSPQG-VVMVEAGANE--LPEHDVIEAIDFGYEAVMDLIKAQTEIMQE 223
>gi|293391608|ref|ZP_06635942.1| polynucleotide phosphorylase/polyadenylase [Aggregatibacter
actinomycetemcomitans D7S-1]
gi|290952142|gb|EFE02261.1| polynucleotide phosphorylase/polyadenylase [Aggregatibacter
actinomycetemcomitans D7S-1]
Length = 743
Score = 144 bits (362), Expect = 1e-32, Method: Composition-based stats.
Identities = 42/241 (17%), Positives = 87/241 (36%), Gaps = 18/241 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR + +R + + V GS + G+T L ATL + ++ + +
Sbjct: 348 RIDGRTVDTVRALDICTGVLPRTHGSAIFTRGETQALAVATLGTERDAQIIDELTGERSD 407
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + R+ G + R + +V+ A + + +
Sbjct: 408 HFLFHYNFPPYSVGETGMIGSPKRREIGHGRL----AKRGVAAVMPTLAEFPYVVRVVSE 463
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ GA +AL D ++ + V + + +
Sbjct: 464 ITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEEDKFVVLSD---------I 514
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T G + +Q + + + LN AK ++ + +
Sbjct: 515 LGDEDHLGDMDFKVAGTREG-VTALQMDIKIEGITAEIMQIALNQAKSARMHILGVMEQA 573
Query: 238 I 238
I
Sbjct: 574 I 574
Score = 93.4 bits (230), Expect = 2e-17, Method: Composition-based stats.
Identities = 34/232 (14%), Positives = 74/232 (31%), Gaps = 27/232 (11%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----HGWITAEYGMLPR 68
++L +++ A + + DT + T ++ V + T G +P
Sbjct: 49 VTLETGAIARQATAAVMASMDDTTVFVTVVAKKDVKEGQDFFPLTVNYQERTYAAGRIPG 108
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
R GR I R+I R +R + Q++ +
Sbjct: 109 GFFKR------EGRPSEGETLIARLIDRPIRPLFPEGFFNEIQVVATVVSVNPQISPDLV 162
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+ GA A G + A G + G +++ E +D
Sbjct: 163 AMIGASAA-------------LSLSGVPFNGPIGAARVGFINGQFVLNPTMNEQKQSRLD 209
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
T ++ V+ A+ +++ A + + +I+ K++++
Sbjct: 210 LVVAGT-DKAVLMVESEADI--LTEEQMLAAVVYGHQQQQVVIEAIKELVAE 258
>gi|289804468|ref|ZP_06535097.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Typhi str. AG3]
Length = 362
Score = 144 bits (362), Expect = 1e-32, Method: Composition-based stats.
Identities = 45/242 (18%), Positives = 92/242 (38%), Gaps = 18/242 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR+++ +R + + V GS L G+T L TATL + +V + +
Sbjct: 19 RIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVLDELMGERTD 78
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + R+ G + R + +V+ + + +
Sbjct: 79 SFLFHYNFPPYSVGETGMVGSPKRREIGHGRL----AKRGVLAVMPDMDKFPYTVRVVSE 134
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ GA +AL D ++ + V +G + +
Sbjct: 135 ITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLSD---------I 185
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D + G I +Q + +++ LN AK ++ + +
Sbjct: 186 LGDEDHLGDMDFKVAGSRDG-ISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQA 244
Query: 238 IS 239
I+
Sbjct: 245 IN 246
>gi|332827644|gb|EGK00386.1| polyribonucleotide nucleotidyltransferase [Dysgonomonas gadei ATCC
BAA-286]
Length = 720
Score = 144 bits (362), Expect = 1e-32, Method: Composition-based stats.
Identities = 50/243 (20%), Positives = 89/243 (36%), Gaps = 18/243 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHG 57
RL GR ++R I A GS + G+T LTT T L+EK+ + N
Sbjct: 318 RLDGRSTTEIRPIWSEVDYLPGAHGSAIFTRGETQSLTTVTLGTKLDEKIIDDVLNNGKE 377
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P STG+ + V R+ G RAL+ ++ + I + D
Sbjct: 378 RFLLHYNFPPFSTGDARPQRGVGRREIGHGNL----AHRALKPMIPANY--PYVIRVVSD 431
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+++++G + A + +AL D ++ + + + + D+
Sbjct: 432 ILESNGSSSMATVCAGTLALMDAGVQIKKPVTGIAMGLISE-------KKGTNFAVLSDI 484
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T G I Q + S + LN A++ ++ +
Sbjct: 485 LGDEDHLGDMDFKVCGTKDG-ITATQMDIKVDGLSYEILEKALNQAREGRLHIMGKILET 543
Query: 238 ISN 240
+
Sbjct: 544 LPE 546
Score = 105 bits (262), Expect = 5e-21, Method: Composition-based stats.
Identities = 34/240 (14%), Positives = 72/240 (30%), Gaps = 22/240 (9%)
Query: 7 QENQMREISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGM 65
R I+L ++K A+GS +++ G+T +L T + + E
Sbjct: 9 DLGDGRTITLETGKLAKQADGSVMLRMGNTMMLATVCAAKDAKPDVDFMPLQVEYKEKFA 68
Query: 66 LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125
GR + R++ RALR + + +
Sbjct: 69 AFGRFP--GGFLRREGRASDYEILVCRLVDRALRPLFPDDYHAEVFVNVTLFSSDGIDMP 126
Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185
L + + G ++ + + G I++ + +
Sbjct: 127 DA-------------LAGLAASAALAVSDVPFNGPISEVRVARVDGQFILNPTFAQVEQA 173
Query: 186 DVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ---KDVISNEV 242
D+D T +I+ V+ E S+ + +A + I + Q + + V
Sbjct: 174 DMDIMVGATID-NIMMVE--GEFKEVSEAEMLEAIKVAHEAIKIQCQAQIELMEAVGKTV 230
>gi|300780976|ref|ZP_07090830.1| polyribonucleotide nucleotidyltransferase [Corynebacterium
genitalium ATCC 33030]
gi|300532683|gb|EFK53744.1| polyribonucleotide nucleotidyltransferase [Corynebacterium
genitalium ATCC 33030]
Length = 759
Score = 144 bits (362), Expect = 1e-32, Method: Composition-based stats.
Identities = 45/243 (18%), Positives = 87/243 (35%), Gaps = 14/243 (5%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKH 56
R+ GR +R++ + + A GS L + G+T +L TL+ E+ +
Sbjct: 370 FRIDGRGVTDIRDLEVEVELIPRAHGSSLFERGETQILGVTTLDMLKMEQQLDSLHPETS 429
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P STG + + R+ G RAL V+ I
Sbjct: 430 KHYIHHYNFPPYSTGETGRVGSPKRREIGHGAL----AERALIPVIPSKEDFPYTIRQVS 485
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+ + ++G T ++ + ++L++ + + V + G + D
Sbjct: 486 EALGSNGSTSMGSVCASTLSLYNAGVPLAAPVAGIAMGLV-----SGEVDGETKYVALTD 540
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED+ D+D T I +Q + D + L+ AK+ ++ +
Sbjct: 541 ILGAEDAFGDMDFKVAGTSEF-ITALQLDTKLDGIPSDVLASALDQAKEARETILDTMAE 599
Query: 237 VIS 239
VI
Sbjct: 600 VIE 602
Score = 76.8 bits (187), Expect = 2e-12, Method: Composition-based stats.
Identities = 39/257 (15%), Positives = 70/257 (27%), Gaps = 41/257 (15%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGD-THLLTTATLE----EKVPMWIRNTKHGWITAEYGM 65
R I +++ A GS D T LL+T T E + G
Sbjct: 37 RTIRFETGQLARQAGGSVTTYLDDDTMLLSTVTASNQPREGFDFFPLTVDVEERMYAAGK 96
Query: 66 LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125
+P S R GR + R+I R LR Q+++ +
Sbjct: 97 IPGSFFRR------EGRPSTEAILACRLIDRPLRPTFVKGLRNEVQVVVTVMSWNPEEYY 150
Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185
AI GA A + +++ + G + ++ +
Sbjct: 151 DVVAINGASAATQLSGLPVSGAVGGVRMALIADDQH-------PEGQWVAFPNHEQHEAA 203
Query: 186 DVDANFVMT-----------DSGHIVEVQGSAERATF----------SQDHFFAMLNLAK 224
+ I+ V+ A ++ L AK
Sbjct: 204 VFEMVVAGRIVEKKKGRKKVQDVAIMMVEAGAGANAVKLIDGGAPAPTERTVAEGLEAAK 263
Query: 225 DRIADLIKLQKDVISNE 241
I L + Q ++++
Sbjct: 264 PFIQTLCEAQN-ALADK 279
>gi|24378670|ref|NP_720625.1| polynucleotide phosphorylase/polyadenylase [Streptococcus mutans
UA159]
gi|81452619|sp|Q8DWB2|PNP_STRMU RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|24376532|gb|AAN57931.1|AE014867_3 polyribonucleotide nucleotidyltransferase [Streptococcus mutans
UA159]
Length = 730
Score = 144 bits (362), Expect = 1e-32, Method: Composition-based stats.
Identities = 42/242 (17%), Positives = 80/242 (33%), Gaps = 18/242 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56
+R GR+ +++R + GS L G T L+ T + ++ +
Sbjct: 317 VRPDGRRVDEIRPLDAEIDFLPKVHGSGLFTRGQTQALSVLTLAPMGDTQIVDGLDEEYK 376
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y S G + A R+ G RAL V+ I +
Sbjct: 377 KRFMHHYNFPQYSVGETGRYGAPGRREIGHGALG----ERALAQVLPSLEAFPYAIRLVA 432
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V++++G + A+I +AL ++ + + + D
Sbjct: 433 EVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISD---------GTNYTVLTD 483
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T G I +Q + + L AK +++ + +
Sbjct: 484 IQGLEDHFGDMDFKVAGTREG-ITALQMDIKIEGITPQILEEALAQAKKARFEILDVIEK 542
Query: 237 VI 238
VI
Sbjct: 543 VI 544
Score = 104 bits (258), Expect = 1e-20, Method: Composition-based stats.
Identities = 44/231 (19%), Positives = 85/231 (36%), Gaps = 26/231 (11%)
Query: 13 EISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKV---PMWIRNTKHGWITAEYGMLPR 68
++++ V+K A G+ LV++GD+ +L+ A + +K+ + + G P
Sbjct: 14 KLAVEIGQVAKQANGAALVRYGDSTVLSAAVMSKKMSTGDFFPLQINYEEKRYAAGKFPG 73
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
R GR + R+I R +R + Q+I AD A
Sbjct: 74 GFNKR------EGRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDADASAPMA 127
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+ G+ +A G +A + L G +++ E ++
Sbjct: 128 AMFGSSLA-------------LSISDIPFNGPIAGVQVAYLDGQYVINPTAEEKKASLLE 174
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
T I V+ A+ S+D L + + +LI Q+++I+
Sbjct: 175 LTVAGTKE-AINMVESGAKE--LSEDIMLEALLKGHEAVRELIAFQEEIIA 222
>gi|325279004|ref|YP_004251546.1| Polyribonucleotide nucleotidyltransferase [Odoribacter splanchnicus
DSM 20712]
gi|324310813|gb|ADY31366.1| Polyribonucleotide nucleotidyltransferase [Odoribacter splanchnicus
DSM 20712]
Length = 758
Score = 144 bits (362), Expect = 1e-32, Method: Composition-based stats.
Identities = 47/241 (19%), Positives = 80/241 (33%), Gaps = 18/241 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56
+RL GR Q+R I GS + G+T L++ T L+EK+
Sbjct: 316 VRLDGRTTEQIRPIWCEVGYLPGPHGSSIFTRGETQSLSSVTLGTKLDEKIIDEATIQGK 375
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P STG V R+ G R + R + + +
Sbjct: 376 ERFLLHYNFPPFSTGEAKASRGVGRREIGHGNLALRALKRMIP------EDFPYTVRVVS 429
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
D+++++G + A + +AL D M+ + + G + D
Sbjct: 430 DILESNGSSSMATVCAGTLALMDAGVPMKKPVTGIAMGLITD-------KGCAKYAVLSD 482
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T G I Q + S + L AK ++ + +
Sbjct: 483 ILGDEDHLGDMDFKVTGTRDG-ITATQMDIKVDGLSYEIMEQALEQAKRGRMHIMDIITE 541
Query: 237 V 237
Sbjct: 542 T 542
Score = 99.1 bits (245), Expect = 4e-19, Method: Composition-based stats.
Identities = 36/235 (15%), Positives = 72/235 (30%), Gaps = 27/235 (11%)
Query: 7 QENQMREISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITA 61
R I+L ++K A+G+ ++K G+T LL T V + + A
Sbjct: 9 TLADGRVITLETGKLAKQADGAVMLKMGNTMLLATVVSAQDAGPDVDFMPLSVDYKEKFA 68
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
G P R G+ + R++ RALR + + +
Sbjct: 69 SVGRFPGGFTRR------EGKSSDYEILVSRLVDRALRPLFPDDYHAETFVQVTLYSADE 122
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
+ L + + G ++ + + G +++
Sbjct: 123 ESMPDA-------------LAGLAASAALAVSDIPFHGPISEVRVARIQGEFVINPTASA 169
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
D+D T +I+ V+ E S+ + A I + Q++
Sbjct: 170 LKEADLDIMVGATYE-NIMMVE--GEMNEVSEKEMLDAIKFAHAAIKEQCVAQQE 221
>gi|253573573|ref|ZP_04850916.1| polyribonucleotide nucleotidyltransferase [Paenibacillus sp. oral
taxon 786 str. D14]
gi|251847101|gb|EES75106.1| polyribonucleotide nucleotidyltransferase [Paenibacillus sp. oral
taxon 786 str. D14]
Length = 702
Score = 144 bits (362), Expect = 1e-32, Method: Composition-based stats.
Identities = 44/249 (17%), Positives = 85/249 (34%), Gaps = 21/249 (8%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56
+R GR+ +++R I + GS L G T L+ T + ++ I +
Sbjct: 313 VRPDGRKLDEIRPIECDISLLPRTHGSGLFTRGQTQALSICTLGALGDVQILDGIDLEES 372
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P S G A R+ G RAL V+ + I +
Sbjct: 373 KRFMHHYNFPPFSVGEARPLRAPGRREIGHGALG----ERALSKVIPPESEFPYTIRLVS 428
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V++++G T A+I + +A+ D ++ + + G +I
Sbjct: 429 EVLESNGSTSQASICASTLAMMDAGVPIKAPVAGVAMGLIKDGEHVSILTD--------- 479
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T G + +Q + + L A++ ++ +
Sbjct: 480 IQGMEDHLGDMDFKVAGTAEG-VTAIQMDIKIDGIDRQILSDALKQAREGRLFILSKMME 538
Query: 237 VI---SNEV 242
I +
Sbjct: 539 RIQKPKEHL 547
Score = 109 bits (271), Expect = 4e-22, Method: Composition-based stats.
Identities = 37/232 (15%), Positives = 80/232 (34%), Gaps = 26/232 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATL---EEKVPMWIRNTKHGWITAEYGMLP 67
R + L ++K A + +V++GDT +L T T + + + + G +P
Sbjct: 12 RPLILETGRLAKQANAAVMVRYGDTAVLCTVTASSEPKDLDFFPLTVNYEEKLYAVGKIP 71
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R GR ++ R+ R +R + QI+ + D
Sbjct: 72 GGFIKR------EGRPSEKAILASRLTDRPIRPLFPEGFRNDVQIVNLVMSVDQDCEPEI 125
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
A++ G A G + ++ G + G +++ D + D+
Sbjct: 126 ASMIGTSAA-------------LSISDVPFNGPIGGVAVGRVNGEFVINPDVAQQEASDI 172
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
T I+ V+ AE ++ + + I ++ + +D++
Sbjct: 173 YVVVAGTKD-AIMMVE--AEANEVPEEVMLEAIMFGHEEIKKIVAVIEDLVK 221
>gi|88705689|ref|ZP_01103399.1| polyribonucleotide nucleotidyltransferase [Congregibacter litoralis
KT71]
gi|88700202|gb|EAQ97311.1| polyribonucleotide nucleotidyltransferase [Congregibacter litoralis
KT71]
Length = 704
Score = 144 bits (362), Expect = 1e-32, Method: Composition-based stats.
Identities = 40/241 (16%), Positives = 85/241 (35%), Gaps = 18/241 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +R+I+ + A GS L G+T + TL + ++ + +
Sbjct: 314 RIDGRDTRTVRQIACEVDILSKAHGSALFTRGETQAIGAVTLGSTRDAQIIDALEGERRD 373
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + S R+ G + R L +V+ I + +
Sbjct: 374 PFMLHYNFPPYSVGEAGRVGFTSRREIGHGRL----ARRGLAAVLPDLEEFPYTIRVVSE 429
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ +A+ ++ + V +G+ A+ +
Sbjct: 430 ITESNGSSSMASVCVGSLAMMTAGVPLKAPVAGIAMGLVKEGNQFAVLTD---------I 480
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T +G + +Q + ++ L A ++ V
Sbjct: 481 LGDEDHLGDMDFKVAGTANG-VTALQMDIKIEGITEQIMEIALEQAMQARLHILGQMNAV 539
Query: 238 I 238
+
Sbjct: 540 L 540
Score = 103 bits (257), Expect = 2e-20, Method: Composition-based stats.
Identities = 35/233 (15%), Positives = 71/233 (30%), Gaps = 28/233 (12%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKHGWITAEYGMLPR 68
++L +++ A G+ LV +T +L T E E + + G +P
Sbjct: 15 VTLETGRIARQATGAVLVTVENTSVLVTVVAEKTAREGRDFFPLAVHYIEKAYSVGKIPG 74
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
R R + R+I R +R + + Q+I
Sbjct: 75 GFFKR------EARPSEKETLTSRLIDRPIRPLFADGFMNEVQVICTVMSADKHIDPDIP 128
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY-PIVDLDYGEDSTIDV 187
A+ G A G + A G I++ Y + +
Sbjct: 129 AMIGTSAA-------------LAISGCPFNGPIGAARVGFNESEGYILNPTYDQLPNSKL 175
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
+ T ++ V+ A ++D + A + +IK +++ +
Sbjct: 176 EMVVAGTQD-AVLMVESQA--DQLTEDQMLGAVLFAHQEMQVVIKAVQELAAE 225
>gi|322386167|ref|ZP_08059800.1| polyribonucleotide nucleotidyltransferase [Streptococcus cristatus
ATCC 51100]
gi|321269747|gb|EFX52674.1| polyribonucleotide nucleotidyltransferase [Streptococcus cristatus
ATCC 51100]
Length = 732
Score = 144 bits (362), Expect = 1e-32, Method: Composition-based stats.
Identities = 43/242 (17%), Positives = 80/242 (33%), Gaps = 18/242 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56
+R GR+ +++R + GS L G T L+ T E ++ +
Sbjct: 317 VRPDGRKVDEIRPLDAEVDYLPRVHGSGLFTRGQTQALSVLTLAPMGETQIVDGLDPEYK 376
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y S G + A R+ G RAL V+ I +
Sbjct: 377 KRFMHHYNFPQYSVGETGRYGAPGRREIGHGALG----ERALEQVLPSLEEFPYAIRLVA 432
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V++++G + A+I +AL ++ + + + D
Sbjct: 433 EVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISD---------GSNYTVLTD 483
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T G I +Q + + + L AK +++ L +
Sbjct: 484 IQGLEDHFGDMDFKVAGTREG-ITALQMDIKIEGITAEILTEALAQAKKARFEILDLIEA 542
Query: 237 VI 238
I
Sbjct: 543 TI 544
Score = 116 bits (290), Expect = 3e-24, Method: Composition-based stats.
Identities = 45/232 (19%), Positives = 87/232 (37%), Gaps = 26/232 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKV---PMWIRNTKHGWITAEYGMLP 67
RE+ + V+K A GS +V++G++ +LT AT+ +K+ + + G P
Sbjct: 13 RELVVETGQVAKQANGSAVVRYGESTVLTAATMSKKMATGDFFPLQVNYEEKMYAAGKYP 72
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R GR + R+I R +R + Q+I D +
Sbjct: 73 GGFMKR------EGRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDEDASPQM 126
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
AA+ G+ +A G +A + G + G I++ + +
Sbjct: 127 AAMFGSSLA-------------LSISDIPFNGPIAGVQVGYVDGEFIINPSKEQKEVSLL 173
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
+ T I V+ A+ S+D L + + +LI Q+++++
Sbjct: 174 ELTVAGTKD-AINMVESGAKE--LSEDIMLEALLKGHEAVKELIAFQEEIVA 222
>gi|311739667|ref|ZP_07713502.1| polyribonucleotide nucleotidyltransferase [Corynebacterium
pseudogenitalium ATCC 33035]
gi|311305483|gb|EFQ81551.1| polyribonucleotide nucleotidyltransferase [Corynebacterium
pseudogenitalium ATCC 33035]
Length = 748
Score = 144 bits (362), Expect = 1e-32, Method: Composition-based stats.
Identities = 45/242 (18%), Positives = 90/242 (37%), Gaps = 14/242 (5%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKH 56
R+ GR +R++S+ + A GS L + G+T +L TL+ E+ + +
Sbjct: 364 FRIDGRGVTDIRDLSVEVDLVPRAHGSSLFERGETQILGVTTLDMLKMEQQIDSLTPVES 423
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P STG + + R+ G RAL V+ I
Sbjct: 424 KRYMHHYNFPPFSTGETGRVGSPKRREIGHGAL----AERALLPVIPSREDFPYAIRQVS 479
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+ + ++G T ++ + ++L++ ++ + V + G + D
Sbjct: 480 EALGSNGSTSMGSVCASTLSLYNAGVPLKAPVAGIAMGLV-----SGEVNGKEKFVALTD 534
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED+ D+D T +I +Q + L A+D + +++ +
Sbjct: 535 ILGAEDAFGDMDFKVAGTSE-YITALQLDTKLDGIPSKVLAQALEQARDARSTILETMAE 593
Query: 237 VI 238
VI
Sbjct: 594 VI 595
Score = 75.3 bits (183), Expect = 7e-12, Method: Composition-based stats.
Identities = 39/241 (16%), Positives = 65/241 (26%), Gaps = 24/241 (9%)
Query: 12 REISLTRR-VSKYAEGSCLVKF-GDTHLLTTATLE----EKVPMWIRNTKHGWITAEYGM 65
R + +++ A+GS DT LL T T E + G
Sbjct: 32 RTLRFETGQLARQADGSVTTYLDDDTMLLATTTASNQPREGFDFFPLTVDVEERMYAAGK 91
Query: 66 LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125
+P S R GR + R+I R LR Q+++ +
Sbjct: 92 IPGSFFRR------EGRPSSEAILACRLIDRPLRPTFVKGLRNEVQVVVTVMSQDPEEYY 145
Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185
AI GA A + +++ + + + +
Sbjct: 146 DVVAINGASAATQLSGLPVSGAVGGVRMALIAD-DKHPEGQWVAFPNHEQHERALFEMVV 204
Query: 186 DVDANFVMTDSG-HIVEVQGS---------AERATFSQD-HFFAMLNLAKDRIADLIKLQ 234
I+ V+ A+ A Q+ L AK I L + Q
Sbjct: 205 AGRIVKKGRKDDVAIMMVEAGAGTNVAERIADGAPAPQEATVAEGLEAAKPFIKTLCEAQ 264
Query: 235 K 235
Sbjct: 265 N 265
>gi|227499294|ref|ZP_03929406.1| polynucleotide phosphorylase/polyadenylase [Anaerococcus tetradius
ATCC 35098]
gi|227218645|gb|EEI83879.1| polynucleotide phosphorylase/polyadenylase [Anaerococcus tetradius
ATCC 35098]
Length = 712
Score = 144 bits (362), Expect = 1e-32, Method: Composition-based stats.
Identities = 45/243 (18%), Positives = 85/243 (34%), Gaps = 19/243 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWI-----RNTK 55
+R GR ++R +S + GS L + G T +L+ TL + I R
Sbjct: 311 IRPDGRDLTEIRPLSAEAGLLPRVHGSGLFQRGQTQVLSVVTLGSPADVQIIDGLNREEI 370
Query: 56 HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115
+Y P G+ R+ G + RAL V+ I +
Sbjct: 371 QKRYIHQYNFPPFCVGDIRPLRGPGRREIGHGRL----AERALIPVLPDEKDFPYTIRVV 426
Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIV 175
+V+ ++G + A+I G+ ++L D + + + + +I
Sbjct: 427 SEVLSSNGSSSQASICGSTLSLMDAGVPIRKPVAGIAMGLIKEDSSISILTD-------- 478
Query: 176 DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
+ ED D+D T G I +Q + +++ LN A ++ + +
Sbjct: 479 -IQGLEDHLGDMDFKVAGTRDG-ITALQMDMKIDGITREVLEESLNDAHSARMRILDVIE 536
Query: 236 DVI 238
I
Sbjct: 537 AAI 539
Score = 84.9 bits (208), Expect = 9e-15, Method: Composition-based stats.
Identities = 44/239 (18%), Positives = 76/239 (31%), Gaps = 31/239 (12%)
Query: 13 EISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEK----VPMWIRNTKHGWITAEYGMLP 67
+ +T ++ G C ++ GDT LL TA EK + + G +P
Sbjct: 14 DFEITIGKFAEQTNGECYIRCGDTSLLVTAVASEKPREGIDFFPLICDFQEKLYAVGKIP 73
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R G+ + I R + R LR + + QII + D
Sbjct: 74 GGFLKR------EGKASDEATLISRQMDRPLRPLFPENYYNDVQIIATVLSMDEDNLPDP 127
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
GA +A G V A G + G I++ E +
Sbjct: 128 LTTIGASIA-------------LGISDIPFYGPVGACMVGKVDGKLIINPSKEEREKSTL 174
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI----SNEV 242
+ G I V+ A S++ + LA + I ++ + +I ++
Sbjct: 175 ELTVAG-KKGAINMVEAGACE--LSEEEMLEAMLLALEEIGNISDFIQTIIDDIGKEKI 230
>gi|315106802|gb|EFT78778.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes
HL030PA1]
Length = 733
Score = 144 bits (362), Expect = 1e-32, Method: Composition-based stats.
Identities = 45/242 (18%), Positives = 85/242 (35%), Gaps = 13/242 (5%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
+R+ GR +R +S + GS L + G+T +L +TL E+ +
Sbjct: 339 VRIDGRGPRDIRSLSAEVGIIPRVHGSALFQRGETQILGVSTLNMLDMEQKLDTLSPENT 398
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y M P STG + + R+ G RAL V+ I
Sbjct: 399 RRYMHNYNMPPYSTGETGRVGSPKRREIGHGNL----AERALIPVLPTREEFPYAIREVS 454
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+ I ++G T ++ + +AL + + + + + G + D
Sbjct: 455 EAIGSNGSTSMGSVCASTLALLNAGVPLRASVAGIAMGLMSETDE----DGKTKYLALTD 510
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED+ D+D T + +Q + D L AK+ ++++ +
Sbjct: 511 ILGAEDALGDMDFKVAGTSEF-VTALQLDTKLDGIPADVLAGALKQAKEARTAILEVMNE 569
Query: 237 VI 238
I
Sbjct: 570 AI 571
Score = 73.7 bits (179), Expect = 2e-11, Method: Composition-based stats.
Identities = 40/245 (16%), Positives = 76/245 (31%), Gaps = 32/245 (13%)
Query: 14 ISLTRRV-SKYAEGSCLVKF-GDTHLLTTATLE----EKVPMWIRNTKHGWITAEYGMLP 67
+ + ++ A+GS V GDT LL+ T + + + G +P
Sbjct: 23 VRFEAGLLAQQADGSAAVYLDGDTMLLSATTAAKTPRDSIDFFPLTVDVEERMYAAGRIP 82
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
S R GR + R+I R LR Q+++ +
Sbjct: 83 GSFFRR------EGRPSEGAILACRLIDRPLRPSFVKGLRNEVQVVVTVMALNPAVYYDV 136
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
AI A ++ +++ + V +P VD + V
Sbjct: 137 VAINAASMSTQLAGLPFSGPIGGVRMALIDDQWVC---------FPSVDQRKESTFDMVV 187
Query: 188 DANFVMTDSGHIVEVQGSAERATF----------SQDHFFAMLNLAKDRIADLIKLQKDV 237
+ I+ V+ + AT+ +++ L AK I L Q
Sbjct: 188 AGRVLADGDVAIMMVEAESTPATWGLVRGGRTAPTEEVVATGLEAAKPFIKVLCDAQV-A 246
Query: 238 ISNEV 242
++ ++
Sbjct: 247 LAAKL 251
>gi|254796456|ref|YP_003081292.1| polyribonucleotide nucleotidyltransferase [Neorickettsia risticii
str. Illinois]
gi|254589702|gb|ACT69064.1| polyribonucleotide nucleotidyltransferase [Neorickettsia risticii
str. Illinois]
Length = 638
Score = 144 bits (362), Expect = 1e-32, Method: Composition-based stats.
Identities = 51/244 (20%), Positives = 92/244 (37%), Gaps = 18/244 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
+R GR ++R IS+ GS L G T L ATL +E+V I +
Sbjct: 199 IRPDGRSLTEIRPISIALDYLPGTHGSALFTRGGTQSLVVATLGSYQDEQVMDDIDGERR 258
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
+ Y LP + G A R+ G + +A+++V+ + + +
Sbjct: 259 ESVLLHYNFLPYAVGEVGALRAPGRREIGHGRL----ALKAVKAVLPGKEVFPYTLRLVS 314
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
++ ++DG + A + G+ +AL D + + + G +AI
Sbjct: 315 EITESDGSSSMATVCGSSLALMDTGVPITKHVAGIAMGLITDGARSAILSD--------- 365
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T +G IV +Q + S LN A +++ +
Sbjct: 366 ISGDEDMLGDMDFKVAGTRNG-IVALQMDMKVRGISIATIRNALNQALAGRLHILEKMEH 424
Query: 237 VISN 240
I+
Sbjct: 425 AIAK 428
>gi|229822930|ref|ZP_04449000.1| hypothetical protein GCWU000282_00222 [Catonella morbi ATCC 51271]
gi|229787743|gb|EEP23857.1| hypothetical protein GCWU000282_00222 [Catonella morbi ATCC 51271]
Length = 700
Score = 144 bits (362), Expect = 1e-32, Method: Composition-based stats.
Identities = 46/244 (18%), Positives = 89/244 (36%), Gaps = 18/244 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56
+R GR+ +++R +S + + GS L G T +LT AT E +V + +
Sbjct: 318 VRPDGRRIDEIRPLSSSVALLPRVHGSGLFTRGQTQVLTAATLAPLGEHQVIDGLGIEEG 377
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y S G + + R+ G RAL+ V+ I +
Sbjct: 378 KRFIHHYNFPNFSVGETGRVGSPGRREIGHGALG----ERALKQVIPAPEDFPYTIRLVS 433
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V++++G + A+I +AL D ++ + V++G +
Sbjct: 434 EVLESNGSSSQASICAGTLALMDAGVPIKAPVAGIAMGLVMEGEDYTVLTD--------- 484
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T +G I +Q + ++ L AK +++
Sbjct: 485 IQGLEDHLGDMDFKVAGTAAG-ITALQMDIKIQGITEAILTEALTQAKKARLEILDELVS 543
Query: 237 VISN 240
+
Sbjct: 544 TLPE 547
Score = 112 bits (279), Expect = 6e-23, Method: Composition-based stats.
Identities = 47/233 (20%), Positives = 85/233 (36%), Gaps = 26/233 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKV---PMWIRNTKHGWITAEYGMLP 67
R +S+ ++K A G+ LV++GDT +L+ A +K + + G +P
Sbjct: 14 RPLSVEIGELAKQANGAVLVRYGDTVVLSAAVASKKAGTGDFFPLTVHYIEKMYAVGKVP 73
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R GR + R+I R LR + QI + D
Sbjct: 74 GGFIKR------EGRPSEAATLTSRLIDRPLRPMFPEGVRNEIQITNTVLSVDQDCTPEM 127
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
AA+ GA +A G VA ++ G + G +++ + D+
Sbjct: 128 AAMLGASLA-------------LAVSDIPFDGPVAGVNVGRVNGEIVINPTVAQAELSDI 174
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
+ T + I V+ SA+ S+ L I +L+ Q ++++
Sbjct: 175 ELTVAGTAT-AINMVESSAKE--VSEADMLEALLKGHAAIKELVAFQNEIVAQ 224
>gi|240949645|ref|ZP_04753980.1| polynucleotide phosphorylase/polyadenylase [Actinobacillus minor
NM305]
gi|240295903|gb|EER46579.1| polynucleotide phosphorylase/polyadenylase [Actinobacillus minor
NM305]
Length = 711
Score = 144 bits (362), Expect = 1e-32, Method: Composition-based stats.
Identities = 43/241 (17%), Positives = 88/241 (36%), Gaps = 18/241 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR + +R + + V GS L G+T L ATL + ++ + K
Sbjct: 314 RIDGRTVDTVRALDICTGVLPRTHGSALFTRGETQALAVATLGTERDAQIIDELTGEKSD 373
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + + R+ G + R + +V+ + + + +
Sbjct: 374 RFLFHYNFPPYSVGETGRIGSPKRREIGHGRL----AKRGVLAVMPTAEEFPYVVRVVSE 429
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ GA +AL D ++ + V + + +
Sbjct: 430 ITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEEEKFVVLSD---------I 480
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T G + +Q + + + LN AK ++ + +
Sbjct: 481 LGDEDHLGDMDFKVAGTREG-VTALQMDIKIEGITSEIMRIALNQAKGARMHILGVMEQA 539
Query: 238 I 238
I
Sbjct: 540 I 540
Score = 91.4 bits (225), Expect = 1e-16, Method: Composition-based stats.
Identities = 34/232 (14%), Positives = 74/232 (31%), Gaps = 27/232 (11%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKV----PMWIRNTKHGWITAEYGMLPR 68
++L +++ A + + DT + T +++V + + T G +P
Sbjct: 15 VTLETGAIARQATAAVMASMDDTTVFVTVVAKKEVNEGQDFFPLTVDYQERTYAAGRIPG 74
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
R GR I R+I R +R + Q+I +
Sbjct: 75 GFFKR------EGRPSEGETLIARLIDRPVRPLFPEGFFNEIQVIATVVSVNPQISPDLV 128
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+ GA A G + A G + +++ E +D
Sbjct: 129 AMIGASAA-------------LSLSGVPFNGPIGAARVGFIDNQFVLNPTTSEQRLSRLD 175
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
T ++ V+ A+ +++ A + ++ +I+ K+ +
Sbjct: 176 LVVAGT-DKAVLMVESEADI--LTEEQMLAAVVFGHEQQQVVIENIKEFVKE 224
>gi|50842950|ref|YP_056177.1| polynucleotide phosphorylase/polyadenylase [Propionibacterium acnes
KPA171202]
gi|289426541|ref|ZP_06428284.1| guanosine pentaphosphate synthetase I/polyribonucleotide
nucleotidyltransferase [Propionibacterium acnes SK187]
gi|289428637|ref|ZP_06430320.1| guanosine pentaphosphate synthetase I/polyribonucleotide
nucleotidyltransferase [Propionibacterium acnes J165]
gi|81611463|sp|Q6A7P6|PNP_PROAC RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|50840552|gb|AAT83219.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes
KPA171202]
gi|289153269|gb|EFD01987.1| guanosine pentaphosphate synthetase I/polyribonucleotide
nucleotidyltransferase [Propionibacterium acnes SK187]
gi|289158035|gb|EFD06255.1| guanosine pentaphosphate synthetase I/polyribonucleotide
nucleotidyltransferase [Propionibacterium acnes J165]
gi|313763615|gb|EFS34979.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes
HL013PA1]
gi|313794010|gb|EFS42034.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes
HL110PA1]
gi|313801396|gb|EFS42647.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes
HL110PA2]
gi|313807924|gb|EFS46405.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes
HL087PA2]
gi|313813334|gb|EFS51048.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes
HL025PA1]
gi|313816795|gb|EFS54509.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes
HL059PA1]
gi|313819709|gb|EFS57423.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes
HL046PA2]
gi|313822184|gb|EFS59898.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes
HL036PA1]
gi|313823581|gb|EFS61295.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes
HL036PA2]
gi|313825906|gb|EFS63620.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes
HL063PA1]
gi|313829586|gb|EFS67300.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes
HL063PA2]
gi|313839882|gb|EFS77596.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes
HL086PA1]
gi|314914770|gb|EFS78601.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes
HL005PA4]
gi|314919268|gb|EFS83099.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes
HL050PA1]
gi|314920821|gb|EFS84652.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes
HL050PA3]
gi|314924673|gb|EFS88504.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes
HL036PA3]
gi|314930500|gb|EFS94331.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes
HL067PA1]
gi|314957473|gb|EFT01576.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes
HL002PA1]
gi|314962057|gb|EFT06158.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes
HL002PA2]
gi|314963636|gb|EFT07736.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes
HL082PA1]
gi|314968532|gb|EFT12630.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes
HL037PA1]
gi|314978848|gb|EFT22942.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes
HL072PA2]
gi|314986493|gb|EFT30585.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes
HL005PA2]
gi|314990852|gb|EFT34943.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes
HL005PA3]
gi|315079490|gb|EFT51483.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes
HL053PA2]
gi|315081283|gb|EFT53259.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes
HL078PA1]
gi|315083481|gb|EFT55457.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes
HL027PA2]
gi|315087167|gb|EFT59143.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes
HL002PA3]
gi|315089337|gb|EFT61313.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes
HL072PA1]
gi|315099243|gb|EFT71219.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes
HL059PA2]
gi|315100450|gb|EFT72426.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes
HL046PA1]
gi|315109042|gb|EFT81018.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes
HL030PA2]
gi|327329757|gb|EGE71513.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes
HL096PA3]
gi|327334275|gb|EGE75989.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes
HL097PA1]
gi|327446443|gb|EGE93097.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes
HL013PA2]
gi|327451969|gb|EGE98623.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes
HL092PA1]
gi|327454994|gb|EGF01649.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes
HL087PA3]
gi|327457717|gb|EGF04372.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes
HL083PA2]
gi|328752198|gb|EGF65814.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes
HL020PA1]
gi|328755172|gb|EGF68788.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes
HL087PA1]
gi|328758348|gb|EGF71964.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes
HL025PA2]
Length = 733
Score = 144 bits (362), Expect = 1e-32, Method: Composition-based stats.
Identities = 45/242 (18%), Positives = 85/242 (35%), Gaps = 13/242 (5%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
+R+ GR +R +S + GS L + G+T +L +TL E+ +
Sbjct: 339 VRIDGRGPRDIRSLSAEVGIIPRVHGSALFQRGETQILGVSTLNMLDMEQKLDTLSPENT 398
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y M P STG + + R+ G RAL V+ I
Sbjct: 399 RRYMHNYNMPPYSTGETGRVGSPKRREIGHGNL----AERALIPVLPTREEFPYAIREVS 454
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+ I ++G T ++ + +AL + + + + + G + D
Sbjct: 455 EAIGSNGSTSMGSVCASTLALLNAGVPLRASVAGIAMGLMSETDE----DGKTKYLALTD 510
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED+ D+D T + +Q + D L AK+ ++++ +
Sbjct: 511 ILGAEDALGDMDFKVAGTSEF-VTALQLDTKLDGIPADVLAGALKQAKEARTAILEVMNE 569
Query: 237 VI 238
I
Sbjct: 570 AI 571
Score = 73.7 bits (179), Expect = 2e-11, Method: Composition-based stats.
Identities = 40/245 (16%), Positives = 76/245 (31%), Gaps = 32/245 (13%)
Query: 14 ISLTRRV-SKYAEGSCLVKF-GDTHLLTTATLE----EKVPMWIRNTKHGWITAEYGMLP 67
+ + ++ A+GS V GDT LL+ T + + + G +P
Sbjct: 23 VRFEAGLLAQQADGSAAVYLDGDTMLLSATTAAKTPRDSIDFFPLTVDVEERMYAAGRIP 82
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
S R GR + R+I R LR Q+++ +
Sbjct: 83 GSFFRR------EGRPSEGAILACRLIDRPLRPSFVKGLRNEVQVVVTVMALNPAVYYDV 136
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
AI A ++ +++ + V +P VD + V
Sbjct: 137 VAINAASMSTQLAGLPFSGPIGGVRMALIDDQWVC---------FPSVDQRKESTFDMVV 187
Query: 188 DANFVMTDSGHIVEVQGSAERATF----------SQDHFFAMLNLAKDRIADLIKLQKDV 237
+ I+ V+ + AT+ +++ L AK I L Q
Sbjct: 188 AGRVLADGDVAIMMVEAESTPATWGLVRGGRTAPTEEVVATGLEAAKPFIKVLCDAQV-A 246
Query: 238 ISNEV 242
++ ++
Sbjct: 247 LAAKL 251
>gi|145593929|ref|YP_001158226.1| polynucleotide phosphorylase/polyadenylase [Salinispora tropica
CNB-440]
gi|187611287|sp|A4X4P8|PNP_SALTO RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|145303266|gb|ABP53848.1| Polyribonucleotide nucleotidyltransferase [Salinispora tropica
CNB-440]
Length = 785
Score = 144 bits (362), Expect = 1e-32, Method: Composition-based stats.
Identities = 42/243 (17%), Positives = 82/243 (33%), Gaps = 14/243 (5%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
+R+ GR +R ++ V GS L + G+T ++ TL E+ + K
Sbjct: 340 VRIDGRGPRDIRPLTAEVGVLPRVHGSALFERGETQIMGVTTLNMLRMEQSLDTLSPEKS 399
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P STG + + R+ G RAL V+ I
Sbjct: 400 KRYMHNYNFPPYSTGETGRVGSPKRREIGHGAL----AERALIPVLPSREEFPYAIRQVS 455
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+ + ++G T ++ + + L ++ + + G + D
Sbjct: 456 EALGSNGSTSMGSVCASTLGLLSAGVPLKAPVAGIAMGLISDE-----VEGKTRYVTLTD 510
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED+ D+D T + +Q + D A L A + ++++ +
Sbjct: 511 ILGAEDAFGDMDFKVAGTQEF-VTALQLDTKLDGIPSDVLAAALQQAYEARQTILEVMQA 569
Query: 237 VIS 239
I
Sbjct: 570 AIE 572
Score = 90.7 bits (223), Expect = 2e-16, Method: Composition-based stats.
Identities = 39/248 (15%), Positives = 74/248 (29%), Gaps = 39/248 (15%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT----KHGWITAEYGML 66
R I+ + +++ A GS + + G+T +L+ T+ + G +
Sbjct: 23 RVITFSTGRLARQAAGSVVAQLGETVVLSATTVGRQPKEHFDFFPLTVDVEERMYAAGRI 82
Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
P S R GR + R+I R LR Q++ +
Sbjct: 83 PGSFFRR------EGRPSEDAILTCRLIDRPLRPSFVKGLRNEVQVVETVLALDPSHPYD 136
Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
AI A ++ G + A + G + + E
Sbjct: 137 VVAINAASMST-------------KLSGLPFSGPIGATRMAHIDGSWVAFPTHEELVRAT 183
Query: 187 VDANFVMT----DSGHIVEVQGSAERATF----------SQDHFFAMLNLAKDRIADLIK 232
D I+ V+ A T +++ + L AK I +L +
Sbjct: 184 FDMVVAGRALPDGDVAIMMVEAEATAHTAKLVADGASAPTEEVVASGLEAAKPAIRELCR 243
Query: 233 LQKDVISN 240
Q + ++
Sbjct: 244 AQSE-LAE 250
>gi|255567379|ref|XP_002524669.1| polyribonucleotide nucleotidyltransferase, putative [Ricinus
communis]
gi|223536030|gb|EEF37688.1| polyribonucleotide nucleotidyltransferase, putative [Ricinus
communis]
Length = 958
Score = 143 bits (361), Expect = 1e-32, Method: Composition-based stats.
Identities = 47/243 (19%), Positives = 89/243 (36%), Gaps = 11/243 (4%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56
R+ GR+ +++R + GS L GDT +L T T + + +
Sbjct: 365 FRVDGRRLDEVRPLFCKAGPLPILHGSSLFNRGDTQVLCTVTLGAPGDAQRLESLVGPPT 424
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P S KR ++ R+ G +AL +V+ + I+
Sbjct: 425 KRFMLHYSFPPFSINEVGKRVGLNRREVGHGTL----AEKALLAVLPPEDDFPYTVRINS 480
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V+ +DG T A + G +AL D + + + V + + + + + D
Sbjct: 481 EVMASDGSTSMATVCGGSMALMDAGIPLREHVAGVSVGLVSEVDPS--TGEIKDYRVLTD 538
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T +G + +Q + A D L+ A ++ +
Sbjct: 539 ILGLEDHLGDMDFKIAGTRNG-VTAIQLDIKPAGIPLDIICECLDHALKGRLQILDHMEQ 597
Query: 237 VIS 239
I+
Sbjct: 598 EIN 600
Score = 85.3 bits (209), Expect = 7e-15, Method: Composition-based stats.
Identities = 39/222 (17%), Positives = 69/222 (31%), Gaps = 27/222 (12%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTAT---LEEKVPMWIRNTKHGWITAEYGMLPRS 69
ISL ++++A G+ ++ T +L+T T + + G++P +
Sbjct: 66 ISLETGEIARFANGAVVLSMDQTKVLSTVTSSKGDAVRDFLPLTVDYQEKQFAQGVIPNT 125
Query: 70 TGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAA 129
R G R R+I R +R + Q++ A
Sbjct: 126 FMRR------EGAPKERELLCGRLIDRPIRPLFAPGFYHEVQVMASVLSSDGKQDPDVMA 179
Query: 130 ITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDA 189
AL G + I G + G IV+ E S D++
Sbjct: 180 ANATSAALM-------------LSDIPWGGPIGVIRIGRIGGQFIVNPTMDELSLSDLNL 226
Query: 190 NFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAK-DRIADL 230
+ T + + A S+ A L LA + + L
Sbjct: 227 VYACTKDKTL-MIDVQARE--ISEKDLEAALRLAHPEAVKYL 265
>gi|325577639|ref|ZP_08147914.1| polyribonucleotide nucleotidyltransferase [Haemophilus
parainfluenzae ATCC 33392]
gi|325160384|gb|EGC72510.1| polyribonucleotide nucleotidyltransferase [Haemophilus
parainfluenzae ATCC 33392]
Length = 712
Score = 143 bits (361), Expect = 1e-32, Method: Composition-based stats.
Identities = 42/241 (17%), Positives = 87/241 (36%), Gaps = 18/241 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR + +R + + V GS + G+T L ATL + ++ + +
Sbjct: 314 RIDGRTVDTVRALDICTGVLPRTHGSAIFTRGETQALAVATLGTERDAQIIDELTGERQD 373
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + R+ G + R + +V+ A + + +
Sbjct: 374 HFLFHYNFPPYSVGETGMIGSPKRREIGHGRL----AKRGVAAVMPSLAEFPYVVRVVSE 429
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ GA +AL D ++ + V + + +
Sbjct: 430 ITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEEEKFVVLSD---------I 480
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T G + +Q + + + LN AK ++ + +
Sbjct: 481 LGDEDHLGDMDFKVAGTREG-VTALQMDIKIEGITPEIMQIALNQAKGARMHILGVMEQA 539
Query: 238 I 238
I
Sbjct: 540 I 540
Score = 91.4 bits (225), Expect = 9e-17, Method: Composition-based stats.
Identities = 33/228 (14%), Positives = 70/228 (30%), Gaps = 27/228 (11%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----HGWITAEYGMLPR 68
++L +++ A + + DT + T ++ V + T G +P
Sbjct: 15 VTLETGAIARQATAAVMASMDDTTVFVTVVAKKDVKEGQDFFPLTVNYQERTYAAGKIPG 74
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
R GR I R+I R +R + Q++ +
Sbjct: 75 GFFKR------EGRPSEGETLIARLIDRPIRPLFPEGFFNEIQVVATVVSVNPQISPDLV 128
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+ GA A G + A G + +++ E +D
Sbjct: 129 AMIGASAA-------------LTLSGVPFNGPIGAARVGFIDNQFVLNPTMAEQKQSRLD 175
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
T ++ V+ A+ +++ A + + +I+ K+
Sbjct: 176 LVVAGT-DKAVLMVESEADI--LTEEQMLAAVVFGHQQQQVVIEAIKE 220
>gi|297562516|ref|YP_003681490.1| guanosine pentaphosphate synthetase I/polyribonucleotide
nucleotidyltransferase [Nocardiopsis dassonvillei subsp.
dassonvillei DSM 43111]
gi|296846964|gb|ADH68984.1| guanosine pentaphosphate synthetase I/polyribonucleotide
nucleotidyltransferase [Nocardiopsis dassonvillei subsp.
dassonvillei DSM 43111]
Length = 770
Score = 143 bits (361), Expect = 1e-32, Method: Composition-based stats.
Identities = 41/244 (16%), Positives = 84/244 (34%), Gaps = 18/244 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
+R+ GR +R++S V GS L + G+T ++ TL E+ + K
Sbjct: 337 IRIDGRGPKDIRQLSAEVGVLPRVHGSALFERGETQIMGVTTLNMLRMEQTVDTLNPDKT 396
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P STG + + R+ G RAL V+ I
Sbjct: 397 KRYMHNYNFPPYSTGETGRVGSPKRREIGHGAL----AERALLPVLPAREEFPYAIRQVS 452
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+ + ++G T ++ + ++L +++ + + + +G
Sbjct: 453 EALGSNGSTSMGSVCASTMSLMAAGVPLKEMVSGIAMGLISEGDEFVTLTD--------- 503
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED+ D+D T I +Q + + L A+ ++ + ++
Sbjct: 504 ILGAEDAFGDMDFKVAGTRE-LITALQLDTKLDGIPAEQLALALQQARGARLAILDVMQE 562
Query: 237 VISN 240
I
Sbjct: 563 AIER 566
Score = 80.7 bits (197), Expect = 2e-13, Method: Composition-based stats.
Identities = 39/250 (15%), Positives = 71/250 (28%), Gaps = 40/250 (16%)
Query: 12 REISLTRR-VSKYAEGSCLVKF-GDTHLLTTATLEEKVPMWIRNT----KHGWITAEYGM 65
R I +++ A GS V +T +L+ T ++ + G
Sbjct: 19 RTIRFETGRLARQAAGSATVYLDDETVVLSATTASKRPKENLDFFPLTVDVEERMYAAGR 78
Query: 66 LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125
+P S R GR + R+I R LR QI+ + +
Sbjct: 79 IPGSFFRR------EGRPSEDAILTCRLIDRPLRPSFRKGLRNEIQIVETVLALHPEHLY 132
Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185
AI A ++ G + + ++ G + + E
Sbjct: 133 DVVAINAASMSTQIAG-------------LPFSGPIGGVRVALIDGQWVGFPTHAELENA 179
Query: 186 DVDANFVMT----DSGHIVEVQGSAERATF----------SQDHFFAMLNLAKDRIADLI 231
D I+ V+ + T ++ L AK I L
Sbjct: 180 TFDMVVAGRVLADGDVAIMMVEAESTVRTLKLVAEGAVGPNEQTVAEGLEAAKPFIKVLC 239
Query: 232 KLQKDVISNE 241
K Q ++++
Sbjct: 240 KAQ-QAVADQ 248
>gi|225620025|ref|YP_002721282.1| polynucleotide phosphorylase/polyadenylase [Brachyspira
hyodysenteriae WA1]
gi|257096669|sp|C0R0E0|PNP_BRAHW RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|225214844|gb|ACN83578.1| polynucleotide phosphorylase/polyadenylase [Brachyspira
hyodysenteriae WA1]
Length = 712
Score = 143 bits (361), Expect = 1e-32, Method: Composition-based stats.
Identities = 41/240 (17%), Positives = 78/240 (32%), Gaps = 10/240 (4%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR GR +++R I+ + GS L G T L+ TL + + + +G
Sbjct: 312 MRPDGRALDEIRPITTMTNLIPRVHGSALFTRGQTQCLSIVTLGSEKDAQLMDDIYGKEN 371
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
+ + V G G R + R+ +V+ I + ++++
Sbjct: 372 KTFMLHYNFPPFSVGEVGRYGAPGRREIGHGNLAERSFNAVLPPKDKFPYTIRVVAEILE 431
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
++G + A I + ++L + + + + D+
Sbjct: 432 SNGSSSMATICASTMSLLSAGVPLNASVAGIAMGL---------ATYKDGYKILTDIQGV 482
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
ED D+D T G I Q + S L AK ++ I+N
Sbjct: 483 EDHLGDMDFKVAGTRKG-ITAFQLDIKLTGISAQILKEALEQAKKARYFILDKIDATIAN 541
Score = 108 bits (268), Expect = 9e-22, Method: Composition-based stats.
Identities = 45/229 (19%), Positives = 80/229 (34%), Gaps = 27/229 (11%)
Query: 13 EISLTRRV-SKYAEGSCLVKFGDTHLLTTATLEEKV----PMWIRNTKHGWITAEYGMLP 67
E+ L + +K A GS ++ G+T +L T ++ + + G +P
Sbjct: 12 ELILETGLLAKQAHGSVTLRLGNTTILATVVAAKEPNLESDFFPLTVNYNEKYYAGGKIP 71
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R + + I R+I R LR + QII + D T
Sbjct: 72 GGFFKR------EAKPRDKEILISRIIDRPLRPLFPEGFRNEVQIIPTVLSVDTDMPTDA 125
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
L + + G VAA+ G G I++ E ST ++
Sbjct: 126 -------------LALIASSAALTISWIPFGGPVAAVRIGYKNGEYIINPKNSELSTSEL 172
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
D + I+ ++G A+ S++ F + LA + I +Q +
Sbjct: 173 DIIVAGSKD-AILMIEGEAKE--VSEEVFIGAIELAHKEMQKYIDMQNE 218
>gi|295131021|ref|YP_003581684.1| guanosine pentaphosphate synthetase I/polyribonucleotide
nucleotidyltransferase [Propionibacterium acnes SK137]
gi|291376503|gb|ADE00358.1| guanosine pentaphosphate synthetase I/polyribonucleotide
nucleotidyltransferase [Propionibacterium acnes SK137]
gi|313773552|gb|EFS39518.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes
HL074PA1]
gi|313831348|gb|EFS69062.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes
HL007PA1]
gi|313834958|gb|EFS72672.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes
HL056PA1]
gi|314974222|gb|EFT18318.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes
HL053PA1]
gi|314976667|gb|EFT20762.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes
HL045PA1]
gi|314984307|gb|EFT28399.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes
HL005PA1]
gi|315095362|gb|EFT67338.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes
HL038PA1]
gi|327328376|gb|EGE70138.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes
HL096PA2]
gi|327444160|gb|EGE90814.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes
HL043PA2]
gi|327444959|gb|EGE91613.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes
HL043PA1]
gi|328760033|gb|EGF73613.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes
HL099PA1]
Length = 733
Score = 143 bits (361), Expect = 1e-32, Method: Composition-based stats.
Identities = 45/242 (18%), Positives = 85/242 (35%), Gaps = 13/242 (5%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
+R+ GR +R +S + GS L + G+T +L +TL E+ +
Sbjct: 339 VRIDGRGPRDIRSLSAEVGIIPRVHGSALFQRGETQILGVSTLNMLDMEQKLDTLSPENT 398
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y M P STG + + R+ G RAL V+ I
Sbjct: 399 RRYMHNYNMPPYSTGETGRVGSPKRREIGHGNL----AERALIPVLPTREEFPYAIREVS 454
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+ I ++G T ++ + +AL + + + + + G + D
Sbjct: 455 EAIGSNGSTSMGSVCASTLALLNAGVPLRASVAGIAMGLMSETDE----DGKTKYLALTD 510
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED+ D+D T + +Q + D L AK+ ++++ +
Sbjct: 511 ILGAEDALGDMDFKVAGTSEF-VTALQLDTKLDGIPADVLAGALKQAKEARTAILEVMNE 569
Query: 237 VI 238
I
Sbjct: 570 AI 571
Score = 73.0 bits (177), Expect = 3e-11, Method: Composition-based stats.
Identities = 40/237 (16%), Positives = 72/237 (30%), Gaps = 31/237 (13%)
Query: 14 ISLTRRV-SKYAEGSCLVKF-GDTHLLTTATLE----EKVPMWIRNTKHGWITAEYGMLP 67
+ + ++ A+GS V GDT LL+ T + + + G +P
Sbjct: 23 VRFEAGLLAQQADGSAAVYLDGDTMLLSATTAAKTPRDSIDFFPLTVDVEERMYAAGRIP 82
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
S R GR + R+I R LR Q+++ +
Sbjct: 83 GSFFRR------EGRPSEGAILACRLIDRPLRPSFVKGLRNEVQVVVTVMALNPAVYYDV 136
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
AI A ++ +++ + V +P VD + V
Sbjct: 137 VAINAASMSTQLAGLPFSGPIGGVRMALIDDQWVC---------FPSVDQRKESTFDMVV 187
Query: 188 DANFVMTDSGHIVEVQGSAERATF----------SQDHFFAMLNLAKDRIADLIKLQ 234
+ I+ V+ + AT+ +++ L AK I L Q
Sbjct: 188 AGRVLADGDVAIMMVEAESTPATWGLVRGGRTAPTEEVVATGLEAAKPFIKVLCDAQ 244
>gi|313811605|gb|EFS49319.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes
HL083PA1]
Length = 733
Score = 143 bits (361), Expect = 1e-32, Method: Composition-based stats.
Identities = 45/242 (18%), Positives = 85/242 (35%), Gaps = 13/242 (5%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
+R+ GR +R +S + GS L + G+T +L +TL E+ +
Sbjct: 339 VRIDGRGPRDIRSLSAEVGIIPRVHGSALFQRGETQILGVSTLNMLDMEQKLDTLSPENT 398
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y M P STG + + R+ G RAL V+ I
Sbjct: 399 RRYMHNYNMPPYSTGETGRVGSPKRREIGHGNL----AERALIPVLPTREEFPYAIREVS 454
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+ I ++G T ++ + +AL + + + + + G + D
Sbjct: 455 EAIGSNGSTSMGSVCASTLALLNAGVPLRASVAGIAMGLMSETDE----DGKTKYLALTD 510
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED+ D+D T + +Q + D L AK+ ++++ +
Sbjct: 511 ILGAEDALGDMDFKVAGTSEF-VTALQLDTKLDGIPADVLAGALKQAKEARTAILEVMNE 569
Query: 237 VI 238
I
Sbjct: 570 AI 571
Score = 73.0 bits (177), Expect = 3e-11, Method: Composition-based stats.
Identities = 40/237 (16%), Positives = 72/237 (30%), Gaps = 31/237 (13%)
Query: 14 ISLTRRV-SKYAEGSCLVKF-GDTHLLTTATLE----EKVPMWIRNTKHGWITAEYGMLP 67
+ + ++ A+GS V GDT LL+ T + + + G +P
Sbjct: 23 VRFEAGLLAQQADGSAAVYLDGDTMLLSATTAAKTPRDSIDFFPLTVDVEERMYAAGRIP 82
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
S R GR + R+I R LR Q+++ +
Sbjct: 83 GSFFRR------EGRPSEGAILACRLIDRPLRPSFVKGLRNEVQVVVTVMALNPAVYYDV 136
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
AI A ++ +++ + V +P VD + V
Sbjct: 137 VAINAASMSTQLAGLPFSGPIGGVRMALIDDQWVC---------FPSVDQRKESTFDMVV 187
Query: 188 DANFVMTDSGHIVEVQGSAERATF----------SQDHFFAMLNLAKDRIADLIKLQ 234
+ I+ V+ + AT+ +++ L AK I L Q
Sbjct: 188 AGRVLADGDVAIMMVEAESTPATWGLVRGGRTAPTEEVVATGLEAAKPFIKVLCDAQ 244
>gi|301154832|emb|CBW14295.1| polynucleotide phosphorylase/polyadenylase [Haemophilus
parainfluenzae T3T1]
Length = 712
Score = 143 bits (361), Expect = 1e-32, Method: Composition-based stats.
Identities = 42/241 (17%), Positives = 87/241 (36%), Gaps = 18/241 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR + +R + + V GS + G+T L ATL + ++ + +
Sbjct: 314 RIDGRTVDTVRALDICTGVLPRTHGSAIFTRGETQALAVATLGTERDAQIIDELTGERQD 373
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + R+ G + R + +V+ A + + +
Sbjct: 374 HFLFHYNFPPYSVGETGMIGSPKRREIGHGRL----AKRGVAAVMPSLAEFPYVVRVVSE 429
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ GA +AL D ++ + V + + +
Sbjct: 430 ITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEEEKFVVLSD---------I 480
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T G + +Q + + + LN AK ++ + +
Sbjct: 481 LGDEDHLGDMDFKVAGTREG-VTALQMDIKIEGITPEIMQIALNQAKGARMHILGVMEQA 539
Query: 238 I 238
I
Sbjct: 540 I 540
Score = 90.3 bits (222), Expect = 2e-16, Method: Composition-based stats.
Identities = 32/228 (14%), Positives = 69/228 (30%), Gaps = 27/228 (11%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----HGWITAEYGMLPR 68
++L +++ A + + DT + T ++ V + T G +P
Sbjct: 15 VTLEIGAIARQATAAVMASMDDTTVFVTVVAKKDVKEGQDFFPLTVNYQERTYAAGKIPG 74
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
R GR I R+I R +R + Q++ +
Sbjct: 75 GFFKR------EGRPSEGETLIARLIDRPIRPLFPEGFFNEIQVVATVVSVNPQISPDLV 128
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+ G A G + A G + +++ E +D
Sbjct: 129 AMIGTSAA-------------LTLSGVPFNGPIGAARVGFIDNQFVLNPTMAEQKQSRLD 175
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
T ++ V+ A+ +++ A + + +I+ K+
Sbjct: 176 LVVAGT-DKAVLMVESEADI--LTEEQMLAAVVFGHQQQQVVIEAIKE 220
>gi|149924682|ref|ZP_01913032.1| polynucleotide phosphorylase/polyadenylase [Plesiocystis pacifica
SIR-1]
gi|149814439|gb|EDM74030.1| polynucleotide phosphorylase/polyadenylase [Plesiocystis pacifica
SIR-1]
Length = 698
Score = 143 bits (361), Expect = 1e-32, Method: Composition-based stats.
Identities = 45/243 (18%), Positives = 86/243 (35%), Gaps = 18/243 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R+ GR +R + + + GS L + G+T +TT TL + +T G +
Sbjct: 308 RVDGRGLTDIRALHIEVHPFERPHGSALFQRGETQAITTTTLGTERDAQRLDTIRGDVNN 367
Query: 62 ----EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P G S R+ G RAL V+ + + + D
Sbjct: 368 TFLLHYNFPPYCVGEARPMRGTSRREQGHGAL----AHRALTPVMPDTESFPYTLRVVSD 423
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+++G + AA+ G ++L D ++ + + +G A+ +
Sbjct: 424 TTESNGSSSMAAVCGGCLSLMDAGVPIKAPVAGIAMGLIQEGDKIAVLSD---------I 474
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T G I +Q + ++D L A+ +++ +
Sbjct: 475 LGDEDHLGDMDFKCCGTKDG-ITALQMDIKIHGLTRDILETALEQARAGRLHILEAMLEK 533
Query: 238 ISN 240
+
Sbjct: 534 LPE 536
Score = 85.7 bits (210), Expect = 6e-15, Method: Composition-based stats.
Identities = 45/227 (19%), Positives = 76/227 (33%), Gaps = 27/227 (11%)
Query: 13 EISLTRR-VSKYAEGSCLVKFGDTHLLTTATL---EEKVPMWIRNTKHGWITAEYGMLPR 68
EI ++K A + ++ G+T +L AT+ + +P + A G +P
Sbjct: 14 EIGFETGRIAKQAN-TVIMTLGETAVLVAATMSREPKDLPFMPLTVEFRSANAAAGKIPG 72
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
R GR + R+ R +R + QI+
Sbjct: 73 GYFKR------EGRPTVEEILVCRLTDRPIRPLFPKGYRYDTQIVSQVLSNDLQNEPDVL 126
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+TGA AL G VA I + G + + + D++
Sbjct: 127 AMTGASAALM-------------ISPAPWAGPVAGIRVARVDGELVAFPTFDQIQQADLN 173
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
+ IV V+ AE S+ L AK++ LI+ Q+
Sbjct: 174 LIVSCSRD-AIVMVEAGAEG--ISESDMIDALMFAKEQSLPLIEAQE 217
>gi|254516613|ref|ZP_05128672.1| polyribonucleotide nucleotidyltransferase [gamma proteobacterium
NOR5-3]
gi|219675036|gb|EED31403.1| polyribonucleotide nucleotidyltransferase [gamma proteobacterium
NOR5-3]
Length = 704
Score = 143 bits (361), Expect = 1e-32, Method: Composition-based stats.
Identities = 41/242 (16%), Positives = 86/242 (35%), Gaps = 18/242 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +R+I+ V A GS L G+T + TL + ++ + +
Sbjct: 314 RIDGRDTRTVRQIACEVDVLAKAHGSALFTRGETQAIGAVTLGSTRDAQIIDALEGERRD 373
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + S R+ G + R L +V+ I + +
Sbjct: 374 PFMLHYNFPPYSVGEAGRVGFTSRREIGHGRL----ARRGLAAVLPDLEEFPYTIRVVSE 429
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ +A+ ++ + V +G+ A+ +
Sbjct: 430 ITESNGSSSMASVCVGSLAMMTAGVPLKAPVAGIAMGLVKEGNQFAVLTD---------I 480
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T +G + +Q + ++ L A ++ V
Sbjct: 481 LGDEDHLGDMDFKVAGTANG-VTALQMDIKIEGITEQIMEIALEQAMQARLHILGQMNAV 539
Query: 238 IS 239
++
Sbjct: 540 LA 541
Score = 104 bits (258), Expect = 2e-20, Method: Composition-based stats.
Identities = 35/233 (15%), Positives = 72/233 (30%), Gaps = 28/233 (12%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKHGWITAEYGMLPR 68
++L +++ A G+ LV +T +L T E E + + G +P
Sbjct: 15 VTLETGRIARQASGAVLVTVENTSVLVTVVAEKTAREGRDFFPLAVHYIEKAYSVGKIPG 74
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
R R + R+I R +R + + Q+I
Sbjct: 75 GFFKR------EARPSEKETLTSRLIDRPIRPLFPNGFMNEVQVICTVMSADKHIDPDIP 128
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC-GYPIVDLDYGEDSTIDV 187
A+ G A G + A G I++ Y + +
Sbjct: 129 AMIGTSAA-------------LAISGCPFNGPIGAARVGFNDAEGYILNPTYDQLPGSKL 175
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
+ T+ ++ V+ A ++D + A + +IK +++ +
Sbjct: 176 EMVVAGTED-AVLMVESQA--DQLTEDQMLGAVLFAHQEMQVVIKAVQELAAE 225
>gi|326533940|dbj|BAJ93743.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 897
Score = 143 bits (361), Expect = 1e-32, Method: Composition-based stats.
Identities = 46/241 (19%), Positives = 86/241 (35%), Gaps = 13/241 (5%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEE-----KVPMWIRNTKH 56
R GR ++R I+ + A GS L G+T L TL + ++ + +
Sbjct: 447 RSDGRSACELRPINSQCGILPRAHGSALFTRGETQALAVVTLGDYQMAQRIDTLVDTEES 506
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
+Y P S G + A + R+ G RAL ++ I ++
Sbjct: 507 KSFYLQYTFPPSSVGEVGRTGAPNRREIGHGML----AERALEPILPPEVDFPYTIRVES 562
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+ +++G + A++ G +AL D ++ + VL H G + D
Sbjct: 563 TITESNGSSSMASVCGGCLALQDAGVPIKFPVAGIAMGLVLDTHEFG---GDGTPLILSD 619
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED++ D+D + G I Q + + L A+D ++
Sbjct: 620 ITGSEDASGDMDFKVAGNEHG-ISAFQMDIKVVGITLPVMEQALLQARDGRNHILNEMLK 678
Query: 237 V 237
Sbjct: 679 C 679
Score = 99.5 bits (246), Expect = 3e-19, Method: Composition-based stats.
Identities = 33/225 (14%), Positives = 67/225 (29%), Gaps = 19/225 (8%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRST 70
R I + + + A GS +V G+T + + + + E T
Sbjct: 98 RHILVETGHIGRQASGSVMVTDGETIVYCSVCMADTPSDPSDFFPMSVHYQERLSAAGRT 157
Query: 71 GNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAI 130
GR + R+I R LR + QI+ A+
Sbjct: 158 S--GGFFKREGRAKDHEVLVCRLIDRPLRPTMPKGFYYETQILSWVFSYDGLHSPDCVAV 215
Query: 131 TGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDAN 190
T A +A+ K +A + GM+ +V+ + ++D
Sbjct: 216 TAAGIAM-------------ALSEVPNKQTIAGVRIGMINDQFVVNPTTEQMEDSELDLM 262
Query: 191 FVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
T I+ ++ +++ + + I ++ K
Sbjct: 263 MAGT-DSAILMIE--GFCNFLTEEKLLQAVETGQAAIREICKAID 304
>gi|295102740|emb|CBL00285.1| polyribonucleotide nucleotidyltransferase [Faecalibacterium
prausnitzii L2-6]
Length = 714
Score = 143 bits (361), Expect = 1e-32, Method: Composition-based stats.
Identities = 48/244 (19%), Positives = 89/244 (36%), Gaps = 19/244 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR N++R ++ + GS + G T +LTT TL + ++ + + +
Sbjct: 322 RVDGRGINEIRPLAAEVGILPRVHGSGMFTRGQTQVLTTCTLGGTKDNQLMDDLTDEQTK 381
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + R+ G RAL V+ I +
Sbjct: 382 RYIHHYNFPPYSVGEARAPRSPGRREIGHGAL----AERALLPVLPSLEEFPYTIRCVSE 437
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
V+ ++G T A+I G+ +AL D ++ + +G ++D+
Sbjct: 438 VLSSNGSTSQASICGSTLALMDAGVPIKAPVAGISCGLITEGD---------RWMTMLDI 488
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI-KLQKD 236
ED D+D T G I +Q + + D + ++ ++ K
Sbjct: 489 QGVEDFHGDMDFKVGGTRKG-ITAIQMDIKIDGLTYDIIAEAFEKCRKGRLYILDEIIKP 547
Query: 237 VISN 240
VI+
Sbjct: 548 VIAE 551
Score = 91.4 bits (225), Expect = 9e-17, Method: Composition-based stats.
Identities = 37/236 (15%), Positives = 75/236 (31%), Gaps = 31/236 (13%)
Query: 12 REISLTRRV---SKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKHGWITAEYG 64
R + A S L+++G+T ++ + E V + N ++ G
Sbjct: 25 RPFKVEMGKMCGLSNA--SALIRYGETCVMCNVVMSPKPREGVDFFPLNVEYEEKLYAAG 82
Query: 65 MLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGG 124
+P S R GR G R+ R++ R +R + I + + D
Sbjct: 83 RIPGSFMRR------EGRPGERAILTSRVVDRPMRPLFPKEMRNDVCITMTVMSLDPDCS 136
Query: 125 TRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDST 184
A + GA + G + + G++ G +++ +
Sbjct: 137 PEIAGMIGASLVT-------------AVSEIPWNGPIGGVQVGLVDGEIVLNPTQEQRRK 183
Query: 185 IDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
D+ T IV ++ A +D + A I +I +++
Sbjct: 184 SDLALTVAATMD-KIVMIEAGANE--VDEDTVLNAIKAAHVEIKKIITFINGIVAE 236
>gi|123169759|sp|Q14LB9|PNP_SPICI RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|110005388|emb|CAK99711.1| 3' exoribonuclease transmembrane protein [Spiroplasma citri]
Length = 702
Score = 143 bits (361), Expect = 2e-32, Method: Composition-based stats.
Identities = 47/242 (19%), Positives = 86/242 (35%), Gaps = 18/242 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHG 57
RL GR+ +Q+R +S + GS L G+T +L+ T E ++ I + +
Sbjct: 320 RLDGRKLDQIRPLSSEIDILPVVHGSALFTRGETQVLSVVTLGALGENQIIDGITDEESK 379
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y S G + S R+ G + L ++ + I I +
Sbjct: 380 RFMHHYNFPAFSVGETGRMGPPSRREIGHGALG----EKVLLQIIPSEKVFPYTIRIVSE 435
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
V++++G T A+I A +AL + + + + + D+
Sbjct: 436 VLESNGSTSQASICAATLALMAAGVPITAPVVGIAMGLIKE---------KNNYTILTDI 486
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T +G I +Q + ++ L AK ++
Sbjct: 487 QGMEDHLGDMDFKVAGTATG-ICALQMDIKIVGINKAILQEALKAAKKARLTILDNVLAT 545
Query: 238 IS 239
IS
Sbjct: 546 IS 547
Score = 103 bits (256), Expect = 2e-20, Method: Composition-based stats.
Identities = 47/232 (20%), Positives = 84/232 (36%), Gaps = 25/232 (10%)
Query: 13 EISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEE---KVPMWIRNTKHGWITAEYGMLPR 68
E+ + ++K A GS LV++GDT +L TAT+ +V + G +P
Sbjct: 14 ELIVEHGQLAKQASGSVLVRYGDTVVLVTATVNNKLSEVDFFPLTVVFQEKLYSVGKIPG 73
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
R G+ R+I RALR + + QI+I+ + D R
Sbjct: 74 GFLKR------EGKPSEYGTLSARVIDRALRPLFSENFRNEVQIVINVLAVDNDNDVRMV 127
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
++ A +AL ++ K I++ + + ++
Sbjct: 128 SLFAASLALSISKIPFAGPVAGALVTVDQK------------NNIIINPTLEQINDGQME 175
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
TD I V+ A+ S++ + D I LI Q ++I+
Sbjct: 176 LIVAGTDE-AINMVEAGAKE--VSENLMLQAILAGHDVIQQLIAFQHEIIAK 224
>gi|314954342|gb|EFS98748.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes
HL027PA1]
Length = 733
Score = 143 bits (361), Expect = 2e-32, Method: Composition-based stats.
Identities = 45/242 (18%), Positives = 85/242 (35%), Gaps = 13/242 (5%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
+R+ GR +R +S + GS L + G+T +L +TL E+ +
Sbjct: 339 VRIDGRGPRDIRSLSAEVGIIPRVHGSALFQRGETQILGVSTLNMLDMEQKLDTLSPENP 398
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y M P STG + + R+ G RAL V+ I
Sbjct: 399 RRYMHNYNMPPYSTGETGRVGSPKRREIGHGNL----AERALIPVLPTREEFPYAIREVS 454
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+ I ++G T ++ + +AL + + + + + G + D
Sbjct: 455 EAIGSNGSTSMGSVCASTLALLNAGVPLRASVAGIAMGLMSETDE----DGKTKYLALTD 510
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED+ D+D T + +Q + D L AK+ ++++ +
Sbjct: 511 ILGAEDALGDMDFKVAGTSEF-VTALQLDTKLDGIPADVLAGALKQAKEARTAILEVMNE 569
Query: 237 VI 238
I
Sbjct: 570 AI 571
Score = 73.7 bits (179), Expect = 2e-11, Method: Composition-based stats.
Identities = 40/245 (16%), Positives = 76/245 (31%), Gaps = 32/245 (13%)
Query: 14 ISLTRRV-SKYAEGSCLVKF-GDTHLLTTATLE----EKVPMWIRNTKHGWITAEYGMLP 67
+ + ++ A+GS V GDT LL+ T + + + G +P
Sbjct: 23 VRFEAGLLAQQADGSAAVYLDGDTMLLSATTAAKTPRDSIDFFPLTVDVEERMYAAGRIP 82
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
S R GR + R+I R LR Q+++ +
Sbjct: 83 GSFFRR------EGRPSEGAILACRLIDRPLRPSFVKGLRNEVQVVVTVMALNPAVYYDV 136
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
AI A ++ +++ + V +P VD + V
Sbjct: 137 VAINAASMSTQLAGLPFSGPIGGVRMALIDDQWVC---------FPSVDQRKESTFDMVV 187
Query: 188 DANFVMTDSGHIVEVQGSAERATF----------SQDHFFAMLNLAKDRIADLIKLQKDV 237
+ I+ V+ + AT+ +++ L AK I L Q
Sbjct: 188 AGRVLADGDVAIMMVEAESTPATWGLVRGGRTAPTEEVVATGLEAAKPFIKVLCDAQV-A 246
Query: 238 ISNEV 242
++ ++
Sbjct: 247 LAAKL 251
>gi|332675901|gb|AEE72717.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes
266]
Length = 749
Score = 143 bits (361), Expect = 2e-32, Method: Composition-based stats.
Identities = 45/242 (18%), Positives = 85/242 (35%), Gaps = 13/242 (5%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
+R+ GR +R +S + GS L + G+T +L +TL E+ +
Sbjct: 355 VRIDGRGPRDIRSLSAEVGIIPRVHGSALFQRGETQILGVSTLNMLDMEQKLDTLSPENT 414
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y M P STG + + R+ G RAL V+ I
Sbjct: 415 RRYMHNYNMPPYSTGETGRVGSPKRREIGHGNL----AERALIPVLPTREEFPYAIREVS 470
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+ I ++G T ++ + +AL + + + + + G + D
Sbjct: 471 EAIGSNGSTSMGSVCASTLALLNAGVPLRASVAGIAMGLMSETDE----DGKTKYLALTD 526
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED+ D+D T + +Q + D L AK+ ++++ +
Sbjct: 527 ILGAEDALGDMDFKVAGTSEF-VTALQLDTKLDGIPADVLAGALKQAKEARTAILEVMNE 585
Query: 237 VI 238
I
Sbjct: 586 AI 587
Score = 73.3 bits (178), Expect = 2e-11, Method: Composition-based stats.
Identities = 40/245 (16%), Positives = 76/245 (31%), Gaps = 32/245 (13%)
Query: 14 ISLTRRV-SKYAEGSCLVKF-GDTHLLTTATLE----EKVPMWIRNTKHGWITAEYGMLP 67
+ + ++ A+GS V GDT LL+ T + + + G +P
Sbjct: 39 VRFEAGLLAQQADGSAAVYLDGDTMLLSATTAAKTPRDSIDFFPLTVDVEERMYAAGRIP 98
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
S R GR + R+I R LR Q+++ +
Sbjct: 99 GSFFRR------EGRPSEGAILACRLIDRPLRPSFVKGLRNEVQVVVTVMALNPAVYYDV 152
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
AI A ++ +++ + V +P VD + V
Sbjct: 153 VAINAASMSTQLAGLPFSGPIGGVRMALIDDQWVC---------FPSVDQRKESTFDMVV 203
Query: 188 DANFVMTDSGHIVEVQGSAERATF----------SQDHFFAMLNLAKDRIADLIKLQKDV 237
+ I+ V+ + AT+ +++ L AK I L Q
Sbjct: 204 AGRVLADGDVAIMMVEAESTPATWGLVRGGRTAPTEEVVATGLEAAKPFIKVLCDAQV-A 262
Query: 238 ISNEV 242
++ ++
Sbjct: 263 LAAKL 267
>gi|227542327|ref|ZP_03972376.1| polynucleotide phosphorylase/polyadenylase [Corynebacterium
glucuronolyticum ATCC 51866]
gi|227181927|gb|EEI62899.1| polynucleotide phosphorylase/polyadenylase [Corynebacterium
glucuronolyticum ATCC 51866]
Length = 749
Score = 143 bits (361), Expect = 2e-32, Method: Composition-based stats.
Identities = 45/244 (18%), Positives = 87/244 (35%), Gaps = 14/244 (5%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKH 56
R+ GR Q+R++S+ + A GS L + G+T +L TL+ E+ +
Sbjct: 364 FRIDGRDVKQIRDLSVEVELVPRAHGSALFERGETQILGVTTLDMLKMEQQIDSLSPVTS 423
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P STG + + R+ G RAL V+ I
Sbjct: 424 KRYIHHYNFPPYSTGETGRVGSPKRREIGHGAL----AERALLPVIPSKEEFPYAIRQVS 479
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+ + ++G T ++ + ++L + ++ + V G + + D
Sbjct: 480 EALGSNGSTSMGSVCASTLSLLNAGVPLKAPVTGIAMGLVSDKID-----GKMHYTALTD 534
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED+ D+D T + +Q + + A L A + +++
Sbjct: 535 ILGAEDAFGDMDFKVAGTSE-IVTALQLDTKLDGIPSNVLAAALQQAHEARLEILDTMAQ 593
Query: 237 VISN 240
VI
Sbjct: 594 VIEE 597
Score = 81.8 bits (200), Expect = 7e-14, Method: Composition-based stats.
Identities = 37/241 (15%), Positives = 62/241 (25%), Gaps = 22/241 (9%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGD-THLLTTATLE----EKVPMWIRNTKHGWITAEYGM 65
R I +++ A+GS + T +L T T E + G
Sbjct: 33 RTIRFETGQLARQADGSVTAYLDEDTMMLATTTASNNPREGFDFFPLTVDVEERMYAKGK 92
Query: 66 LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125
+P S R GR + R+I R LR Q +I + +
Sbjct: 93 IPGSFFRR------EGRPSTDAILACRLIDRPLRPTFQKGLRNEVQCVITVMSVDPNEFY 146
Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185
AI A A + +++ + + E
Sbjct: 147 DVVAINAASAATQLSGLPVSGAVGGVRMALIADEDHKDGQWVAFPNVEQHEAALFEMVVA 206
Query: 186 DVDANFVMTDSGHIVEVQGSAERATF----------SQDHFFAMLNLAKDRIADLIKLQK 235
+ I+ V+ A ++ L AK I L + Q
Sbjct: 207 GRRVKKGKKNDVAIMMVEAGATEGVIERVADGAPAPTESVVAEGLEAAKPFIDTLCRAQD 266
Query: 236 D 236
Sbjct: 267 Q 267
>gi|34557289|ref|NP_907104.1| polynucleotide phosphorylase/polyadenylase [Wolinella succinogenes
DSM 1740]
gi|81833066|sp|Q7M9I4|PNP_WOLSU RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|34483005|emb|CAE10004.1| NUCLEOTIDYLTRANSFERASE [Wolinella succinogenes]
Length = 736
Score = 143 bits (361), Expect = 2e-32, Method: Composition-based stats.
Identities = 44/242 (18%), Positives = 83/242 (34%), Gaps = 22/242 (9%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW------IRNTK 55
R GR ++R I + + A S L G+T L ATL + + +
Sbjct: 347 RADGRGLKEVRPIDIQTNILPNAHASALFTRGETQALVVATLGGDMDAQSYELLTEKGSS 406
Query: 56 HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115
Y S G A R+ G RAL + G++ I +
Sbjct: 407 KERFMVHYNFPSFSVGEAGMVGAPGRRELGHGNL----AKRALEPTI--EEWGAQTIRLV 460
Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIV 175
++++++G + A + G +AL + + +++ AI ++
Sbjct: 461 SEILESNGSSSMATVCGGSLALKAAGINTTALVAGVAMGLIVEAEKHAILTDIM------ 514
Query: 176 DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
ED D+D T +G I +Q + S + L AK+ ++ + +
Sbjct: 515 ---GLEDHDGDMDFKIAGTSTG-ITAMQMDIKLGGLSMEILKEALYQAKEGREHILGIME 570
Query: 236 DV 237
Sbjct: 571 KA 572
Score = 61.4 bits (147), Expect = 1e-07, Method: Composition-based stats.
Identities = 33/191 (17%), Positives = 57/191 (29%), Gaps = 17/191 (8%)
Query: 15 SLTRRV-SKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGNR 73
+ +K A GS L + G + LL + E + E
Sbjct: 16 TFEFGAIAKQANGSVLYRCGKSVLLASVCYESDERVKEDFLPLTVQYIEKSYAAGKFP-- 73
Query: 74 VKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGA 133
+ G R+I R+LR + QI + Q D +T A+ A
Sbjct: 74 GGFIKRESKPGDFETLTSRIIDRSLRPLFPKGYAHPTQITVMVLSAQNDADLQTMALNAA 133
Query: 134 WVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVM 193
A F L+ V + G + G +V+ E S +D
Sbjct: 134 SAA-------------LFVSDIPLRKPVHGLRIGKINGALVVNPTTKEMSESTLDLFVSG 180
Query: 194 TDSGHIVEVQG 204
+ ++ ++
Sbjct: 181 VEED-LLMIEM 190
>gi|251793162|ref|YP_003007890.1| polynucleotide phosphorylase/polyadenylase [Aggregatibacter
aphrophilus NJ8700]
gi|247534557|gb|ACS97803.1| polyribonucleotide nucleotidyltransferase
(Polynucleotidephosphorylase) (PNPase) [Aggregatibacter
aphrophilus NJ8700]
Length = 709
Score = 143 bits (361), Expect = 2e-32, Method: Composition-based stats.
Identities = 42/241 (17%), Positives = 87/241 (36%), Gaps = 18/241 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR + +R + + V GS + G+T L ATL + ++ + +
Sbjct: 314 RIDGRTVDTVRALDICTGVLPRTHGSAIFTRGETQALAVATLGTERDAQIIDELTGERQD 373
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + R+ G + R + +V+ A + + +
Sbjct: 374 HFLFHYNFPPYSVGETGMIGSPKRREIGHGRL----AKRGVAAVMPTLAEFPYVVRVVSE 429
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ GA +AL D ++ + V + + +
Sbjct: 430 ITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEDDKFVVLSD---------I 480
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T G + +Q + + + LN AK ++ + +
Sbjct: 481 LGDEDHLGDMDFKVAGTRQG-VTALQMDIKIEGITAEIMQIALNQAKSARMHILSVMEQA 539
Query: 238 I 238
I
Sbjct: 540 I 540
Score = 89.1 bits (219), Expect = 5e-16, Method: Composition-based stats.
Identities = 32/228 (14%), Positives = 70/228 (30%), Gaps = 27/228 (11%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----HGWITAEYGMLPR 68
++L +++ A + + DT + T ++ V + T G +P
Sbjct: 15 VTLETGAIARQATAAVMASMDDTTVFVTVVAKKDVKEGQDFFPLTVNYQERTYAAGRIPG 74
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
R GR I R+I R +R + Q++ +
Sbjct: 75 GFFKR------EGRPSEGETLIARLIDRPIRPLFPEGFFNEIQVVATVVSVNPQISPDLV 128
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+ GA A G + A G + +++ E +D
Sbjct: 129 AMIGASAA-------------LTLSGVPFNGPIGAARVGFINDQFVLNPTINEQKQSRLD 175
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
T ++ V+ A+ +++ A + + +++ K+
Sbjct: 176 LVVAGT-DKAVLMVESEADI--LTEEQMLAAVVFGHQQQQVVVEAIKE 220
>gi|113460848|ref|YP_718915.1| polynucleotide phosphorylase/polyadenylase [Haemophilus somnus
129PT]
gi|170717334|ref|YP_001784444.1| polynucleotide phosphorylase/polyadenylase [Haemophilus somnus
2336]
gi|123031253|sp|Q0I2T0|PNP_HAES1 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|189037307|sp|B0UTJ5|PNP_HAES2 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|112822891|gb|ABI24980.1| polynucleotide phosphorylase [Haemophilus somnus 129PT]
gi|168825463|gb|ACA30834.1| Polyribonucleotide nucleotidyltransferase [Haemophilus somnus 2336]
Length = 713
Score = 143 bits (361), Expect = 2e-32, Method: Composition-based stats.
Identities = 42/241 (17%), Positives = 87/241 (36%), Gaps = 18/241 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR + +R + + V GS + G+T L ATL + ++ + K
Sbjct: 314 RIDGRTVDTVRALDICTGVLPRTHGSAIFTRGETQALAVATLGTERDAQIIDELTGEKTD 373
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + R+ G + R + +V+ + + + +
Sbjct: 374 HFLFHYNFPPYSVGETGMIGSPKRREIGHGRL----AKRGVAAVMPSLSEFPYVVRVVSE 429
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ GA +AL D ++ + V + + +
Sbjct: 430 ITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEEDNFVVLSD---------I 480
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T G + +Q + + + LN AK ++ + +
Sbjct: 481 LGDEDHLGDMDFKVAGTREG-VTALQMDIKIEGITAEIMQIALNQAKSARMHILGVMEQA 539
Query: 238 I 238
I
Sbjct: 540 I 540
Score = 89.9 bits (221), Expect = 3e-16, Method: Composition-based stats.
Identities = 35/228 (15%), Positives = 70/228 (30%), Gaps = 27/228 (11%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----HGWITAEYGMLPR 68
++L +++ A + + DT + T ++ V + T G +P
Sbjct: 15 VTLETGAIARQATAAVMASMDDTSVFVTVVAKKDVKEGQDFFPLTVNYQERTYAAGRIPG 74
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
R GR I R+I R +R + QII +
Sbjct: 75 GFFKR------EGRPSEGETLIARLIDRPIRPLFPEGFFNEIQIIATVVSVNPQISPDLV 128
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+ GA A G + A G + +++ E +D
Sbjct: 129 AMIGASAA-------------LSLSGVPFNGPIGAARVGFINDQFVLNPTMNEQKQSRLD 175
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
T ++ V+ A+ +++ A + + +I+ K+
Sbjct: 176 LVVAGT-DKAVLMVESEADI--LTEEQMLAAVVFGHQQQQIVIEAIKE 220
>gi|304440007|ref|ZP_07399900.1| polyribonucleotide nucleotidyltransferase [Peptoniphilus duerdenii
ATCC BAA-1640]
gi|304371499|gb|EFM25112.1| polyribonucleotide nucleotidyltransferase [Peptoniphilus duerdenii
ATCC BAA-1640]
Length = 697
Score = 143 bits (361), Expect = 2e-32, Method: Composition-based stats.
Identities = 46/243 (18%), Positives = 87/243 (35%), Gaps = 18/243 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R GR +++R +S + + GS L K G T +L+ TL E +V + +
Sbjct: 312 RPDGRALDEIRPLSSEVGLFRRTHGSGLFKRGQTQVLSITTLAGLSEVQVIDGLGDDTPK 371
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G+ R+ G RAL V+ I + +
Sbjct: 372 RYIHHYNFPPYSVGDTKPMRGPGRREIGHGAL----AERALIPVLPTEEEFPYAIRVVSE 427
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
V+ ++G + A++ G+ ++L D ++ + + + V + D+
Sbjct: 428 VLSSNGSSSQASVCGSTLSLMDAGVPIKQPVAGIAMGLIEEHGVI---------KILTDI 478
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T G I +Q + ++ L A+ ++ +
Sbjct: 479 QGLEDHFGDMDFKVAGTREG-ITAIQMDIKVEGIKKEILEEALEKARIARLQILDNIEAT 537
Query: 238 ISN 240
I
Sbjct: 538 IDE 540
Score = 108 bits (269), Expect = 8e-22, Method: Composition-based stats.
Identities = 46/236 (19%), Positives = 90/236 (38%), Gaps = 28/236 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKHGWITAEYGML 66
RE+ +T V++ A G+ LV++GDT +L TAT E + + + + G +
Sbjct: 12 REMRVTIGKVAEQANGAALVEYGDTVVLVTATASKKPREGIDFFPLSVDYEEKMYAVGKI 71
Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
P R GR ++ R+I R LR + Q++ + D
Sbjct: 72 PGGFIKR------EGRPSEKAILTARLIDRPLRPLFPEGYRNDVQVVATALAVDQDNQPD 125
Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
A+ G+ +A G ++ GM+ G +++ + +
Sbjct: 126 IVAMVGSSIA-------------LTISDIPFDGPTGSVFVGMVDGEYVINPTEEQRAKSK 172
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNEV 242
++ N T S I+ V+ A+ S++ + + I + + ++ I EV
Sbjct: 173 IELNLAGTKS-AIMMVEAGAKI--VSEEEMLGAILKGHEEIKKICEFIEE-IQREV 224
>gi|319744138|gb|EFV96511.1| polyribonucleotide nucleotidyltransferase [Streptococcus agalactiae
ATCC 13813]
Length = 713
Score = 143 bits (361), Expect = 2e-32, Method: Composition-based stats.
Identities = 42/244 (17%), Positives = 79/244 (32%), Gaps = 18/244 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56
+R GR+ +++R + GS L G T L+ T E ++ +
Sbjct: 321 VRPDGRRVDEIRPLDAEIDFLPQVHGSGLFTRGQTQALSVLTLAPMGEAQIIDGLTPEYK 380
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y S G + A R+ G RAL V+ I +
Sbjct: 381 KRFMHHYNFPQYSVGETGRYGAAGRREIGHGALG----ERALEQVLPSLEEFPYAIRLVA 436
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V++++G + A+I +AL ++ + + + D
Sbjct: 437 EVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISD---------GTNYTVLTD 487
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T G I +Q + + L AK +++ +
Sbjct: 488 IQGLEDHFGDMDFKVAGTREG-ITALQMDIKIEGITPQILEEALAQAKKARFEILDVLHG 546
Query: 237 VISN 240
I+
Sbjct: 547 AIAE 550
Score = 102 bits (253), Expect = 6e-20, Method: Composition-based stats.
Identities = 41/230 (17%), Positives = 82/230 (35%), Gaps = 26/230 (11%)
Query: 13 EISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKV---PMWIRNTKHGWITAEYGMLPR 68
++ + V+K A GS +V++GD+ +LT A + +K+ + + G P
Sbjct: 18 KLVVETGQVAKQANGSVVVRYGDSTVLTAAVMSKKMSTGDFFPLQVNYEEKMYAAGKFPG 77
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
R GR + R+I R +R + Q+I + A
Sbjct: 78 GFNKR------EGRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSFDENASAPMA 131
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+ G+ +A G +A + + G I++ E ++
Sbjct: 132 AMFGSSLA-------------LSISDIPFNGPIAGVQVAYVDGNFIINPTAQEQEASALE 178
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
T I V+ A+ S++ L + + +LI Q++++
Sbjct: 179 LTVAGTKE-AINMVESGAKE--LSEEIMLEALLKGHEAVCELIAFQEEIV 225
>gi|52424548|ref|YP_087685.1| polynucleotide phosphorylase/polyadenylase [Mannheimia
succiniciproducens MBEL55E]
gi|81387489|sp|Q65VB0|PNP_MANSM RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|52306600|gb|AAU37100.1| Pnp protein [Mannheimia succiniciproducens MBEL55E]
Length = 704
Score = 143 bits (361), Expect = 2e-32, Method: Composition-based stats.
Identities = 41/242 (16%), Positives = 89/242 (36%), Gaps = 18/242 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR + +R + + V GS + G+T L TL + ++ + +
Sbjct: 314 RIDGRTVDTVRALDICTGVLPRTHGSAIFTRGETQSLAVVTLGTERDAQILDELTGERQD 373
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + + R+ G + R + +V+ + + + +
Sbjct: 374 TFLFHYNFPPYSVGETGRVGSPKRREIGHGRL----AKRGVAAVMPSISEFPYVVRVVSE 429
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ GA +AL D ++ + V + + +
Sbjct: 430 ITESNGSSSMASVCGASLALMDAGVPVKSAVAGIAMGLVKEDDKFVVLSD---------I 480
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T +G + +Q + + + LN AK ++ + +
Sbjct: 481 LGDEDHLGDMDFKVAGTRTG-VTALQMDIKIEGITPEIMQIALNQAKSARMHILGVMEQA 539
Query: 238 IS 239
IS
Sbjct: 540 IS 541
Score = 91.8 bits (226), Expect = 7e-17, Method: Composition-based stats.
Identities = 34/232 (14%), Positives = 73/232 (31%), Gaps = 27/232 (11%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT----KHGWITAEYGMLPR 68
++L +++ A + + DT + + ++ V + T G +P
Sbjct: 15 VTLETGAIARQATAAVMASMDDTTVFVSVVAKKDVKEGQDFFPLTVDYQERTYAAGKIPG 74
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
R GR I R+I R +R + L QII +
Sbjct: 75 GFFKR------EGRPSEGETLIARLIDRPIRPLFPEGFLNEIQIIATVVSVNPQISPDLV 128
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+ GA A G + A G + +++ E +D
Sbjct: 129 AMIGASAA-------------LSLSGVPFNGPIGAARVGFINDQFVLNPTMAEQKQSRLD 175
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
T ++ V+ A+ +++ A + + +++ K+ ++
Sbjct: 176 LVVAGT-DKAVLMVESEADI--LTEEQMLAAVVFGHQQQQVVVEAIKEFVAE 224
>gi|228477816|ref|ZP_04062444.1| polyribonucleotide nucleotidyltransferase [Streptococcus salivarius
SK126]
gi|228250508|gb|EEK09722.1| polyribonucleotide nucleotidyltransferase [Streptococcus salivarius
SK126]
Length = 741
Score = 143 bits (361), Expect = 2e-32, Method: Composition-based stats.
Identities = 42/244 (17%), Positives = 82/244 (33%), Gaps = 18/244 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
+R GR+ +++R + GS L G T L+ TL + ++ +
Sbjct: 317 VRPDGRRVDEIRPLDAEIDFLPKVHGSGLFTRGQTQALSVLTLAPMSDTQLVDGLDPEYK 376
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y S G + A R+ G RAL V+ I +
Sbjct: 377 KRFLHHYNFPQYSVGETGRYGAPGRREIGHGALG----ERALAQVLPSVEEFPYAIRLVA 432
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V++++G + A+I +AL ++ + + + D
Sbjct: 433 EVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISD---------GTNYTVLTD 483
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T G I +Q + + + L AK +++ + +
Sbjct: 484 IQGLEDHFGDMDFKVAGTRQG-ITALQMDIKISGITPAILEEALAQAKVARFEILDVIES 542
Query: 237 VISN 240
I+
Sbjct: 543 AIAE 546
Score = 111 bits (276), Expect = 1e-22, Method: Composition-based stats.
Identities = 42/228 (18%), Positives = 77/228 (33%), Gaps = 26/228 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKV---PMWIRNTKHGWITAEYGMLP 67
R + + V+K A G+ +V++GDT +L+TA + +K+ + + G P
Sbjct: 13 RPLVVEVGQVAKQANGAVVVRYGDTTVLSTAVMSKKMATADFFPLQVNYEEKMYAAGKFP 72
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R GR + R+I R +R + Q+I +
Sbjct: 73 GGFNKR------EGRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDENASAPM 126
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
AA+ G+ +A G +A + I++ + +
Sbjct: 127 AAMFGSSLA-------------LSISDIPFNGPIAGVQVAYAAEDFIINPSAADKEVSLL 173
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
D T I V+ A+ S+D L + I +L+ Q
Sbjct: 174 DLTVAGTKE-AINMVESGAQE--LSEDIMLQALLKGHEAIQELVDFQN 218
>gi|333029627|ref|ZP_08457688.1| Polyribonucleotide nucleotidyltransferase [Bacteroides coprosuis
DSM 18011]
gi|332740224|gb|EGJ70706.1| Polyribonucleotide nucleotidyltransferase [Bacteroides coprosuis
DSM 18011]
Length = 713
Score = 143 bits (361), Expect = 2e-32, Method: Composition-based stats.
Identities = 52/241 (21%), Positives = 87/241 (36%), Gaps = 18/241 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
RL GR+ Q+R I GS + G+T L T TL +EK+ +
Sbjct: 319 RLDGRKTTQVRPIWSEVDCLPGPHGSAVFTRGETQALCTVTLGTKSDEKIIDDVLCHGKE 378
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P STG + V R+ G RAL+ ++ I + D
Sbjct: 379 RFLLHYNFPPFSTGEARPQRGVGRREVGHGNL----AHRALKRMIP--ENYPYVIRVISD 432
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+++++G + A + G +AL D ++ + + + G + D+
Sbjct: 433 ILESNGSSSMATVCGGTLALMDAGVQIKKPVSGIAMGLIKN-------PGEDKYAVLSDI 485
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T G I Q + S D LN AK+ ++ +
Sbjct: 486 LGDEDHLGDMDFKVTGTKDG-ITATQMDIKVDGLSFDILEKALNQAKEGRMHILDKILET 544
Query: 238 I 238
+
Sbjct: 545 L 545
Score = 102 bits (253), Expect = 5e-20, Method: Composition-based stats.
Identities = 36/236 (15%), Positives = 73/236 (30%), Gaps = 20/236 (8%)
Query: 8 ENQMREISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGML 66
R I+L ++K A+G+ +++ G+T +L T + E
Sbjct: 11 LGDGRTITLETGKLAKQADGAVMLRMGNTMMLATVCAAKDAVPGTDFMPLQVEYKEKFSA 70
Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
GR R++ RALR +
Sbjct: 71 FGRFP--GGFTRREGRASDYEILTCRLVDRALRPLFPDDYHAEVY-------------VN 115
Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
+ V + D L + + G ++ + G I++ + + D
Sbjct: 116 IILFSADGVDMPDALAGLAASAALAVSDIPFHGPISEVRVARTDGKFIINPTFEQLEKAD 175
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNEV 242
+D T +I+ V+ E + S+ + +A + I K Q + ++ V
Sbjct: 176 MDIMVAATYE-NIMMVE--GEMSEVSEAELLEAMKVAHEAIKVHCKAQIE-LAEAV 227
>gi|306825739|ref|ZP_07459078.1| polyribonucleotide nucleotidyltransferase [Streptococcus sp. oral
taxon 071 str. 73H25AP]
gi|304432100|gb|EFM35077.1| polyribonucleotide nucleotidyltransferase [Streptococcus sp. oral
taxon 071 str. 73H25AP]
Length = 754
Score = 143 bits (361), Expect = 2e-32, Method: Composition-based stats.
Identities = 42/244 (17%), Positives = 80/244 (32%), Gaps = 18/244 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56
+R GR+ +++R + GS L G T L+ T E ++ +
Sbjct: 334 VRPDGRKVDEIRPLDAQVDYLPRVHGSGLFTRGQTQALSVLTLAPMGETQIIDGLDPEYK 393
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y S G + A R+ G RAL V+ I +
Sbjct: 394 KRFMHHYNFPQYSVGETGRYGAPGRREIGHGALG----ERALAQVLPSLEEFPYAIRLVA 449
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V++++G + A+I +AL ++ + + + D
Sbjct: 450 EVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISD---------GNNYTVLTD 500
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T G I +Q + + + L AK +++ + +
Sbjct: 501 IQGLEDHFGDMDFKVAGTRDG-ITALQMDIKIQGITAEILTEALAQAKKARFEILDVIEA 559
Query: 237 VISN 240
I
Sbjct: 560 TIPE 563
Score = 113 bits (281), Expect = 3e-23, Method: Composition-based stats.
Identities = 42/232 (18%), Positives = 85/232 (36%), Gaps = 26/232 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKV---PMWIRNTKHGWITAEYGMLP 67
RE+ + V+K A GS +V++G++ +LT A + +K+ + + G P
Sbjct: 30 RELIVETGQVAKQANGSVVVRYGESTVLTAAVMSKKMATGDFFPLQVNYEEKMYAAGKFP 89
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R GR + R+I R +R + Q+I +
Sbjct: 90 GGFMKR------EGRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDENASAPM 143
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
AA+ G+ +A G +A + G + G I++ + +
Sbjct: 144 AAMFGSSLA-------------LSISDIPFDGPIAGVQVGYVDGQIIINPSQEQAEQSLL 190
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
+ T I V+ A+ S++ L + + +LI Q+++++
Sbjct: 191 ELTVAGTKH-AINMVESGAKE--LSEEIMLEALLKGHEAVKELIAFQEEIVA 239
>gi|296269051|ref|YP_003651683.1| guanosine pentaphosphate synthetase I/polyribonucleotide
nucleotidyltransferase [Thermobispora bispora DSM 43833]
gi|296091838|gb|ADG87790.1| guanosine pentaphosphate synthetase I/polyribonucleotide
nucleotidyltransferase [Thermobispora bispora DSM 43833]
Length = 773
Score = 143 bits (361), Expect = 2e-32, Method: Composition-based stats.
Identities = 44/242 (18%), Positives = 83/242 (34%), Gaps = 18/242 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
+R+ GR +R+++ V GS L + G+T +L TL E+ + +
Sbjct: 337 IRIDGRGPKDIRQLNAEVHVIPRVHGSALFERGETQILGITTLNMLRMEQTIDTLNPERT 396
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P STG + A R+ G RAL V+ I
Sbjct: 397 KRYMHNYNFPPYSTGEVGRVGAPKRREIGHGAL----AERALLPVLPSREEFPYAIRQVS 452
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+ I ++G T ++ + ++L D ++D + + +
Sbjct: 453 EAIGSNGSTSMGSVCASTMSLLDAGVPLKDMVAGIAMGLIGENGKYVTLTD--------- 503
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED+ D+D T I +Q + + L A+ ++ + K+
Sbjct: 504 IIGAEDAMGDMDFKVAGTRD-LITALQLDTKLDGIPAEVLAGALKQARSARLAILDVMKE 562
Query: 237 VI 238
I
Sbjct: 563 AI 564
Score = 88.4 bits (217), Expect = 9e-16, Method: Composition-based stats.
Identities = 41/245 (16%), Positives = 72/245 (29%), Gaps = 39/245 (15%)
Query: 12 REISLTRR-VSKYAEGSCLVKFG-DTHLLTTATLEEKVPMWIRNT----KHGWITAEYGM 65
R + +++ A GS + +T +L+ T+ ++ + G
Sbjct: 19 RTVRFETGRLARQATGSAVAYLDDETMVLSATTVSKQPKEGLDFFPLTVDVEERMYAAGK 78
Query: 66 LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125
+P S R GR + R+I R LR QI+ I D
Sbjct: 79 IPGSFFRR------EGRPSEDAILTCRLIDRPLRPSFAKGLRNEVQIVATVLAIHPDHLY 132
Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185
AI A ++ G + + G++ G + Y E
Sbjct: 133 DVVAINAASMSTQLAG-------------LPFSGPIGGVRVGLIDGKWVAFPTYSELENA 179
Query: 186 DVDANFVMT----DSGHIVEVQGSAERATF----------SQDHFFAMLNLAKDRIADLI 231
D I+ V+ + R T +++ L AK I L
Sbjct: 180 TFDMVVAGRVLEDGDVAIMMVEAESTRNTLKLVAEGAVAPTEEVVAQGLEAAKPFIKVLC 239
Query: 232 KLQKD 236
+ Q+
Sbjct: 240 EAQEK 244
>gi|89898059|ref|YP_515169.1| polynucleotide phosphorylase/polyadenylase [Chlamydophila felis
Fe/C-56]
gi|123483690|sp|Q255L4|PNP_CHLFF RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|89331431|dbj|BAE81024.1| polyribonucleotide nucleotidyltransferase [Chlamydophila felis
Fe/C-56]
Length = 694
Score = 143 bits (361), Expect = 2e-32, Method: Composition-based stats.
Identities = 45/244 (18%), Positives = 85/244 (34%), Gaps = 18/244 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKH 56
+R GR +R IS+ GSCL G+T + TL + +
Sbjct: 313 LRSDGRSVTTIRPISIDTSFLPRTHGSCLFTRGETQTVAVCTLGSEAMAQRYEDLNGEGL 372
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
+Y P S G + + R+ G + +AL + A I I+
Sbjct: 373 AKFYLQYFFPPFSVGEVGRIGSPGRREIGHGKL----AEKALSHALPDPAKFPYTIRIES 428
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
++ +++G + A++ G +AL D ++ + +L I
Sbjct: 429 NITESNGSSSMASVCGGCLALMDAGVPIKTPIAGIAMGLILDDDHVTILSD--------- 479
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D G I Q + + + A L AK ++++ K
Sbjct: 480 ISGLEDHLGDMDFKVAGNAEG-ITAFQMDIKVEGITPEIMQAALAQAKSGRQNILETMKA 538
Query: 237 VISN 240
+++
Sbjct: 539 TLAS 542
Score = 97.2 bits (240), Expect = 2e-18, Method: Composition-based stats.
Identities = 36/234 (15%), Positives = 71/234 (30%), Gaps = 26/234 (11%)
Query: 7 QENQMREISLTRR-VSKYAEGSCLVKFGDTHL---LTTATLEEKVPMWIRNTKHGWITAE 62
+ + + +++ A G+ L + +T + + ATLEE V + +
Sbjct: 9 TLEEGKTLVFETGKIARQANGAVLARMQETWVFSSVCAATLEEPVDFLPLRVDYQEKFSS 68
Query: 63 YGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQAD 122
G R GR R R+I R++R + + QI+
Sbjct: 69 IGKTLGGFIKR------EGRPTEREILTSRLIDRSMRPSLPNRLMQDVQILSYVWSYDGV 122
Query: 123 GGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGED 182
AI G A VA + G + +V+ E
Sbjct: 123 TLPDPIAICGVSAA-------------LAISDIPQINIVAGVRVGFINNTWVVNPTKAEM 169
Query: 183 STIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
++ T+ I+ ++ F+++ + I + K +D
Sbjct: 170 DVSRMELVLAGTEK-AILMIE--GHCDFFTEEQVIEAIEFGHKHIVTICKAIED 220
>gi|227488675|ref|ZP_03918991.1| polynucleotide phosphorylase/polyadenylase [Corynebacterium
glucuronolyticum ATCC 51867]
gi|227091336|gb|EEI26648.1| polynucleotide phosphorylase/polyadenylase [Corynebacterium
glucuronolyticum ATCC 51867]
Length = 745
Score = 143 bits (360), Expect = 2e-32, Method: Composition-based stats.
Identities = 45/244 (18%), Positives = 87/244 (35%), Gaps = 14/244 (5%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKH 56
R+ GR Q+R++S+ + A GS L + G+T +L TL+ E+ +
Sbjct: 360 FRIDGRDVKQIRDLSVEVELVPRAHGSALFERGETQILGVTTLDMLKMEQQIDSLSPVTS 419
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P STG + + R+ G RAL V+ I
Sbjct: 420 KRYIHHYNFPPYSTGETGRVGSPKRREIGHGAL----AERALLPVIPSKEEFPYAIRQVS 475
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+ + ++G T ++ + ++L + ++ + V G + + D
Sbjct: 476 EALGSNGSTSMGSVCASTLSLLNAGVPLKAPVAGIAMGLVSDKID-----GKMHYTALTD 530
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED+ D+D T + +Q + + A L A + +++
Sbjct: 531 ILGAEDAFGDMDFKVAGTSE-IVTALQLDTKLDGIPSNVLAAALQQAHEARLEILDTMAQ 589
Query: 237 VISN 240
VI
Sbjct: 590 VIEE 593
Score = 81.8 bits (200), Expect = 7e-14, Method: Composition-based stats.
Identities = 37/241 (15%), Positives = 62/241 (25%), Gaps = 22/241 (9%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGD-THLLTTATLE----EKVPMWIRNTKHGWITAEYGM 65
R I +++ A+GS + T +L T T E + G
Sbjct: 29 RTIRFETGQLARQADGSVTAYLDEDTMMLATTTASNNPREGFDFFPLTVDVEERMYAKGK 88
Query: 66 LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125
+P S R GR + R+I R LR Q +I + +
Sbjct: 89 IPGSFFRR------EGRPSTDAILACRLIDRPLRPTFQKGLRNEVQCVITVMSVDPNEFY 142
Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185
AI A A + +++ + + E
Sbjct: 143 DVVAINAASAATQLSGLPVSGAVGGVRMALIADEDHKDGQWVAFPNVEQHEAALFEMVVA 202
Query: 186 DVDANFVMTDSGHIVEVQGSAERATF----------SQDHFFAMLNLAKDRIADLIKLQK 235
+ I+ V+ A ++ L AK I L + Q
Sbjct: 203 GRRVKKGKKNDVAIMMVEAGATEGVIERVADGAPAPTESVVAEGLEAAKPFIDTLCRAQD 262
Query: 236 D 236
Sbjct: 263 Q 263
>gi|317968641|ref|ZP_07970031.1| ribonuclease PH [Synechococcus sp. CB0205]
Length = 244
Score = 143 bits (360), Expect = 2e-32, Method: Composition-based stats.
Identities = 99/239 (41%), Positives = 144/239 (60%), Gaps = 4/239 (1%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R GR +R +A S V G+T ++ + LEE VP W + + GW++A
Sbjct: 7 RRDGRSATDLRSTRFAWDPMGFALSSVTVYTGNTAVICSVCLEEGVPKWRKGSGKGWLSA 66
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
+Y +LP ST +R R + GR+QEIQR+I R+LR+ +DL ALG R + IDCDV+QA
Sbjct: 67 DYRLLPASTPSRQPR--ELMKLSGRTQEIQRLIARSLRACLDLEALGERTLQIDCDVLQA 124
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
D GTRTA+ITGAW AL LQ +E + V + VAA+S G++ G ++DLDY E
Sbjct: 125 DAGTRTASITGAWAALAVGLQRLEQRGVLERSPLVGQ--VAAVSVGLVDGAALLDLDYSE 182
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
DS +VD N VM H++E+QG+AE A FS+ ++++LA+ I L++ QK ++
Sbjct: 183 DSRAEVDLNVVMNQEQHLLEIQGTAEGAPFSRQQLSSLVDLAESGIDQLMQAQKQALAE 241
>gi|315634794|ref|ZP_07890076.1| polyribonucleotide nucleotidyltransferase [Aggregatibacter segnis
ATCC 33393]
gi|315476346|gb|EFU67096.1| polyribonucleotide nucleotidyltransferase [Aggregatibacter segnis
ATCC 33393]
Length = 742
Score = 143 bits (360), Expect = 2e-32, Method: Composition-based stats.
Identities = 42/241 (17%), Positives = 87/241 (36%), Gaps = 18/241 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR + +R + + V GS + G+T L ATL + ++ + +
Sbjct: 347 RIDGRTVDTVRALDICTGVLPRTHGSAIFTRGETQALAVATLGTERDAQIIDELTGERQD 406
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + R+ G + R + +V+ A + + +
Sbjct: 407 HFLFHYNFPPYSVGETGMIGSPKRREIGHGRL----AKRGVAAVMPTLAEFPYVVRVVSE 462
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ GA +AL D ++ + V + + +
Sbjct: 463 ITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEDDKFVVLSD---------I 513
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T G + +Q + + + LN AK ++ + +
Sbjct: 514 LGDEDHLGDMDFKVAGTRQG-VTALQMDIKIEGITAEIMQIALNQAKSARMHILGVMEQA 572
Query: 238 I 238
I
Sbjct: 573 I 573
Score = 88.4 bits (217), Expect = 8e-16, Method: Composition-based stats.
Identities = 32/230 (13%), Positives = 71/230 (30%), Gaps = 27/230 (11%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----HGWITAEYGMLPR 68
++L +++ A + + DT + ++ V + T G +P
Sbjct: 48 VTLETGAIARQATAAVMASMDDTTVFVAVVAKKDVKEGQDFFPLTVNYQERTYAAGRIPG 107
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
R GR I R+I R +R + Q++ +
Sbjct: 108 GFFKR------EGRPSEGETLIARLIDRPIRPLFPEGFFNEIQVVATVVSVNPQISPDLV 161
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+ GA A G + A G + +++ E +D
Sbjct: 162 AMIGASAA-------------LSLSGVPFNGPIGAARVGFINDQFVLNPTINEQKQSRLD 208
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
T ++ V+ A+ +++ A + + +I+ K+++
Sbjct: 209 LVVAGT-DKAVLMVESEADI--LTEEQMLAAVVYGHQQQQVVIEAIKELV 255
>gi|303239217|ref|ZP_07325746.1| polyribonucleotide nucleotidyltransferase [Acetivibrio
cellulolyticus CD2]
gi|302593262|gb|EFL62981.1| polyribonucleotide nucleotidyltransferase [Acetivibrio
cellulolyticus CD2]
Length = 703
Score = 143 bits (360), Expect = 2e-32, Method: Composition-based stats.
Identities = 44/242 (18%), Positives = 82/242 (33%), Gaps = 16/242 (6%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHG 57
R+ GR+ +++R +S + GS L + G T +LT T + +V I +
Sbjct: 312 RVDGRRLDEIRPLSADVGLLPRVHGSGLFQRGQTQVLTIVTLGALGDVQVLDGIELEETK 371
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y S G R+ G RAL V+ + + +
Sbjct: 372 RYMHHYNFPGYSVGEAKTSRGPGRREIGHGAL----AERALEPVIPSQEEFPYTMRLVSE 427
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
V+ ++G T ++ G+ +AL D ++ V+ +D+
Sbjct: 428 VLMSNGSTSQGSVCGSTLALMDAGVPIKKPVAGISAGLVVDEDEPG------RFVTFMDI 481
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI-KLQKD 236
ED D+D T G I +Q + +++ L + +I +
Sbjct: 482 QGIEDFFGDMDFKVAGTKDG-ITAIQVDIKVDGLTEEIVEQAFELTRKGRLQIIDDVILK 540
Query: 237 VI 238
I
Sbjct: 541 AI 542
Score = 101 bits (252), Expect = 7e-20, Method: Composition-based stats.
Identities = 38/234 (16%), Positives = 74/234 (31%), Gaps = 27/234 (11%)
Query: 12 REISLTRRVSKY-AEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKHGWITAEYGML 66
R + + + GS +V++GDT +L+ AT E + + + + G +
Sbjct: 12 RTLVIETGKLAQLSNGSVMVRYGDTVVLSNATASAKPREGIDFFPLSVDYEERLYSVGKI 71
Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
P R G+ ++ R+I R LR + ++ + D
Sbjct: 72 PGGFIKR------EGKPSEKAILTSRVIDRPLRPLFPKDLRNDVALVNTVMSVDQDNSPE 125
Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
AA+ GA +A G V + G++ G +++ D +
Sbjct: 126 VAALLGASMA-------------LSISDIPFNGPVGGVILGLVDGKVVINPDAKQREKSQ 172
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
+ T IV ++ A D + I + V+
Sbjct: 173 MYVTLAATRE-KIVMIEAGANEVP--DDVMLDAIRQGHQEIRKICDFIDSVVKE 223
>gi|257439280|ref|ZP_05615035.1| polyribonucleotide nucleotidyltransferase [Faecalibacterium
prausnitzii A2-165]
gi|257198155|gb|EEU96439.1| polyribonucleotide nucleotidyltransferase [Faecalibacterium
prausnitzii A2-165]
Length = 714
Score = 143 bits (360), Expect = 2e-32, Method: Composition-based stats.
Identities = 48/244 (19%), Positives = 89/244 (36%), Gaps = 19/244 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR N++R ++ + GS + G T +LTT TL + ++ + + +
Sbjct: 322 RVDGRGINEIRPLAAEVGILPRVHGSGMFTRGQTQVLTTCTLGGTKDNQLMDDLTDEQTK 381
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + R+ G RAL V+ I +
Sbjct: 382 RYIHHYNFPPYSVGEARAPRSPGRREIGHGAL----AERALVPVLPSLEEFPYTIRCVSE 437
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
V+ ++G T A+I G+ +AL D ++ + +G ++D+
Sbjct: 438 VLSSNGSTSQASICGSTLALMDAGVPIKAPVAGISCGLITEGD---------RWMTMLDI 488
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI-KLQKD 236
ED D+D T G I +Q + + D + ++ ++ K
Sbjct: 489 QGVEDFHGDMDFKVGGTRKG-ITAIQMDIKIDGLTYDIIAEAFEKCRKGRLYILDEIIKP 547
Query: 237 VISN 240
VI+
Sbjct: 548 VIAQ 551
Score = 94.5 bits (233), Expect = 1e-17, Method: Composition-based stats.
Identities = 38/236 (16%), Positives = 75/236 (31%), Gaps = 31/236 (13%)
Query: 12 REISLTRRV---SKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKHGWITAEYG 64
R + A S L+++G+T +L + E V + N ++ G
Sbjct: 25 RPFKVEMGKMCGLSNA--SALIRYGETCVLCNVVMSPKPREGVDFFPLNVEYEEKLYAAG 82
Query: 65 MLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGG 124
+P S R GR G R+ R++ R +R + I + + D
Sbjct: 83 RIPGSFMRR------EGRPGERAILTSRVVDRPMRPLFPKEMRNDVCITMTVMSLDPDCS 136
Query: 125 TRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDST 184
A + GA + G + + G++ G +++ +
Sbjct: 137 PEIAGMIGASLVT-------------AVSEIPWNGPIGGVQVGLVDGEIVLNPTQEQRKV 183
Query: 185 IDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
D+ T IV ++ A +D + A I +I +++
Sbjct: 184 SDLALTVAATMD-KIVMIEAGANE--VDEDTMLNAIKAAHVEIKKIITFINGIVAE 236
>gi|326333597|ref|ZP_08199836.1| polyribonucleotide nucleotidyltransferase [Nocardioidaceae
bacterium Broad-1]
gi|325948613|gb|EGD40714.1| polyribonucleotide nucleotidyltransferase [Nocardioidaceae
bacterium Broad-1]
Length = 753
Score = 143 bits (360), Expect = 2e-32, Method: Composition-based stats.
Identities = 45/243 (18%), Positives = 87/243 (35%), Gaps = 14/243 (5%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKH 56
+R+ GR +R + V GS L + G+T +L TL+ E+ + KH
Sbjct: 346 VRIDGRGLADIRPLHSEVGVIPRVHGSALFERGETQILGVTTLDMLKMEQQLDTLSPEKH 405
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
+Y P STG + + R+ G RAL V+ I
Sbjct: 406 RRYMHKYIFPPFSTGETGRVGSPKRREVGHGAL----ARRALLPVLPSREEFPYAIRQLS 461
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+ + ++G T ++ + ++L + ++ + + + G + D
Sbjct: 462 EAMGSNGSTSMGSVCASTMSLLNAGVPLKAPVAGIAMGLI-----SGEIDGETKYVALTD 516
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED+ D+D T + +Q + + LN AKD ++ + +
Sbjct: 517 ILGAEDAFGDMDFKVAGTSEF-VTALQLDTKLDGIPAEVLAQALNQAKDARTTILDVMHE 575
Query: 237 VIS 239
I
Sbjct: 576 AIG 578
Score = 77.6 bits (189), Expect = 1e-12, Method: Composition-based stats.
Identities = 37/241 (15%), Positives = 69/241 (28%), Gaps = 31/241 (12%)
Query: 12 REISLTRRV-SKYAEGSCLVKFG-DTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRS 69
R + + ++ A GS +T LL+ T+ ++ E
Sbjct: 21 RTVKFETGLLARQAAGSVTAYLDDETMLLSATTVSKQPKDHFDFFPLTIDVEERMYAAGK 80
Query: 70 TGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAA 129
GR G + R+I R LR Q++I + D A
Sbjct: 81 IP--GSFFRSEGRPGEDAILTCRLIDRPLRPTFKKGLRNEVQVVITVMALDPDQPYDVLA 138
Query: 130 ITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDA 189
I A ++ G V + ++ G + + + D
Sbjct: 139 INAASMSTQ-------------LSGLPFSGPVGGVRVALIEGQWVAFPTHSQLENAVFDM 185
Query: 190 NFVM----TDSGHIVEVQGSAERATF----------SQDHFFAMLNLAKDRIADLIKLQK 235
T I+ V+ + T+ ++ L+ AK I L++ Q
Sbjct: 186 VVAGRVTETGDVAIMMVEAESTEQTWDLVQSGAQAPTEPIVAGGLDAAKPFIKQLVEAQA 245
Query: 236 D 236
+
Sbjct: 246 E 246
>gi|220929129|ref|YP_002506038.1| polynucleotide phosphorylase/polyadenylase [Clostridium
cellulolyticum H10]
gi|254782714|sp|B8I2R5|PNP_CLOCE RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|219999457|gb|ACL76058.1| 3' exoribonuclease [Clostridium cellulolyticum H10]
Length = 703
Score = 143 bits (360), Expect = 2e-32, Method: Composition-based stats.
Identities = 46/238 (19%), Positives = 82/238 (34%), Gaps = 8/238 (3%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R+ GR+ +++R +S + GS L + G T +LTT TL + + + T
Sbjct: 312 RIDGRRLDEIRTLSAEVGILPRTHGSGLFERGQTQVLTTVTLGAMGDVQMLDGIDTEETK 371
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
Y G V S G R + R+L V+ + +V+ +
Sbjct: 372 RYMHHYNFPGYSVGEAKTSRGPGRREIGHGALAERSLVPVIPTETEFPYAFRLVSEVLMS 431
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
+G T ++ G+ +AL D ++ V+ +D+ E
Sbjct: 432 NGSTSQGSVCGSTLALMDAGVPIKAPVAGISAGLVIDEE------NPDNFVTFMDIQGIE 485
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI-KLQKDVI 238
D D+D T G I +Q + S + L + +I + I
Sbjct: 486 DFFGDMDFKVAGTTEG-ITAIQMDIKVDGLSYEIIRQAFELTRMGRLQIINDVILKAI 542
Score = 102 bits (254), Expect = 4e-20, Method: Composition-based stats.
Identities = 35/234 (14%), Positives = 80/234 (34%), Gaps = 27/234 (11%)
Query: 12 REISLTRRVSKY-AEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKHGWITAEYGML 66
R +++ A GS L+++GDT ++++AT + + + + + G +
Sbjct: 12 RTLTVETGKLAQLANGSALIRYGDTVIMSSATASAAPRDGIDFFPLSVDYEERLYAVGKI 71
Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
P R G+ ++ R+I R +R + ++ ++ D
Sbjct: 72 PGGFIKR------EGKPSEKAILTSRVIDRPIRPLFPKDLRNDVAVVNTVMSVEQDNSPE 125
Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
AA+ GA VA G + + G++ G I++ + + +
Sbjct: 126 IAAMIGASVA-------------ISISDIPFNGPIGGVVLGLVDGEVIINPNEEQRAKSK 172
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
+ T I ++ A+ D F + + I + ++
Sbjct: 173 MYVTLAGTKE-KITMIEAGADIVP--DDVMFDAIKKGHEEIKKICDFINGIVKE 223
>gi|313115448|ref|ZP_07800916.1| polyribonucleotide nucleotidyltransferase [Faecalibacterium cf.
prausnitzii KLE1255]
gi|310622242|gb|EFQ05729.1| polyribonucleotide nucleotidyltransferase [Faecalibacterium cf.
prausnitzii KLE1255]
Length = 716
Score = 143 bits (360), Expect = 2e-32, Method: Composition-based stats.
Identities = 48/244 (19%), Positives = 89/244 (36%), Gaps = 19/244 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR N++R ++ + GS + G T +LTT TL + ++ + + +
Sbjct: 322 RVDGRGINEIRPLAAEVGILPRVHGSGMFTRGQTQVLTTCTLGGTKDNQLMDDLTDEQTK 381
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + R+ G RAL V+ I +
Sbjct: 382 RYIHHYNFPPYSVGEARAPRSPGRREIGHGAL----AERALVPVLPSLEEFPYTIRCVSE 437
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
V+ ++G T A+I G+ +AL D ++ + +G ++D+
Sbjct: 438 VLSSNGSTSQASICGSTLALMDAGVPIKAPVAGISCGLITEGD---------RWMTMLDI 488
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI-KLQKD 236
ED D+D T G I +Q + + D + ++ ++ K
Sbjct: 489 QGVEDFHGDMDFKVGGTRKG-ITAIQMDIKIDGLTYDIIAEAFEKCRKGRLYILDEIIKP 547
Query: 237 VISN 240
VI+
Sbjct: 548 VIAE 551
Score = 92.2 bits (227), Expect = 6e-17, Method: Composition-based stats.
Identities = 37/236 (15%), Positives = 75/236 (31%), Gaps = 31/236 (13%)
Query: 12 REISLTRRV---SKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKHGWITAEYG 64
R + A S ++++G+T +L + E V + N ++ G
Sbjct: 25 RPFKVEMGKMCGLSNA--SAMIRYGETCVLCNVVMSPKPREGVDFFPLNVEYEEKLYAAG 82
Query: 65 MLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGG 124
+P S R GR G R+ R++ R +R + I + + D
Sbjct: 83 RIPGSFMRR------EGRPGERAILTSRVVDRPMRPLFPKEMRNDVCITMTVMSLDPDCS 136
Query: 125 TRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDST 184
A + GA + G + + G++ G +++ +
Sbjct: 137 PEIAGMIGASLVT-------------AVSDIPWNGPIGGVQVGLVDGEIVLNPTQEQRKV 183
Query: 185 IDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
D+ T IV ++ A +D + A I I+ +++
Sbjct: 184 SDLALTVAATMD-KIVMIEAGANE--VDEDTMLNAIKAAHVEIKKTIEFINRIVAE 236
>gi|118474584|ref|YP_892413.1| polynucleotide phosphorylase/polyadenylase [Campylobacter fetus
subsp. fetus 82-40]
gi|187610245|sp|A0RQD0|PNP_CAMFF RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|118413810|gb|ABK82230.1| polyribonucleotide nucleotidyltransferase [Campylobacter fetus
subsp. fetus 82-40]
Length = 728
Score = 143 bits (360), Expect = 2e-32, Method: Composition-based stats.
Identities = 45/242 (18%), Positives = 77/242 (31%), Gaps = 22/242 (9%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHG---- 57
R GR +R IS+ + A GSCL G T L TL +
Sbjct: 344 RADGRGLKDVRPISIETNILPNAHGSCLFTRGQTQALVVTTLGTDNDAQMSEYLTEKNAV 403
Query: 58 --WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115
Y S G +A R+ G RAL + + +
Sbjct: 404 ADKFMFNYNFPGFSVGEASPLKAPGRRELGHGNL----AKRALYPSI--DLNSPYSLRVV 457
Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIV 175
++++++G + A++ G ++L + V +G A+ ++
Sbjct: 458 SEILESNGSSSMASVCGGSLSLRAAGVETIKLVAGVAMGLVFEGDEHAVLTDIM------ 511
Query: 176 DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
ED D+D + G I +Q + S D L AK+ ++ L
Sbjct: 512 ---GLEDHDGDMDFKVAGSKDG-ITALQMDIKLGGISLDVLKEALYQAKEARDHILNLMV 567
Query: 236 DV 237
Sbjct: 568 KA 569
Score = 71.8 bits (174), Expect = 7e-11, Method: Composition-based stats.
Identities = 35/254 (13%), Positives = 75/254 (29%), Gaps = 53/254 (20%)
Query: 20 VSKYAEGSCLVKFGDTHLLTTATLEE---KVPMWIRNTKHGWITAEYGMLPRSTGNRVKR 76
V+K A G+ L++ +T +L E+ + ++ G +P R
Sbjct: 19 VAKQAAGAVLMRVKNTVVLAAVAREDAQVEEDFLPLTVQYIEKQYAAGRIPGGYVKR--- 75
Query: 77 EAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVA 136
+ G R+I R+LR + QI++ + + ++ A VA
Sbjct: 76 ---ETKPGDFETLTSRIIDRSLRPLFPKGYAYPTQIVVMVLSSDPEVDLQVVSLNAASVA 132
Query: 137 LHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDS 196
L+ + V + G + G +++ E +D
Sbjct: 133 LY-------------LSDIPVNSPVCGVRVGHINGKFVINPSNSELKNSALDLYVAGVKD 179
Query: 197 GHIVEVQGSA------------------------------ERATFSQDHFFAMLNLAKDR 226
++ ++ + + FS+D + LA +
Sbjct: 180 -ELLMIEMRSLPNEQNEIVPVIAIDPMMDPSLNEGFVSRQKMNEFSEDLMIDAIKLATEA 238
Query: 227 IADLIKLQKDVISN 240
I ++ N
Sbjct: 239 ILKGSNAYEEAFRN 252
>gi|306832712|ref|ZP_07465849.1| polyribonucleotide nucleotidyltransferase [Streptococcus bovis ATCC
700338]
gi|304425168|gb|EFM28297.1| polyribonucleotide nucleotidyltransferase [Streptococcus bovis ATCC
700338]
Length = 727
Score = 143 bits (360), Expect = 2e-32, Method: Composition-based stats.
Identities = 43/242 (17%), Positives = 79/242 (32%), Gaps = 18/242 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56
+R GR+ +++R + GS L G T L+ T E ++ +
Sbjct: 317 IRPDGRRVDEIRPLDAEIDYLPKVHGSGLFTRGQTQALSVLTLAPMGETQIVDGLDPEYK 376
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y S G + A R+ G RAL V+ I +
Sbjct: 377 KRFLHHYNFPQYSVGETGRYGAPGRREIGHGALG----ERALAQVLPSLEEFPYAIRLVA 432
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V++++G + A+I +AL ++ + + + D
Sbjct: 433 EVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISD---------GSNYTILTD 483
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T G I +Q + + L AK +++ L +
Sbjct: 484 IQGLEDHFGDMDFKVAGTREG-ITALQMDIKIEGITPQILKEALAQAKKARFEILDLIEA 542
Query: 237 VI 238
I
Sbjct: 543 TI 544
Score = 106 bits (265), Expect = 2e-21, Method: Composition-based stats.
Identities = 40/232 (17%), Positives = 83/232 (35%), Gaps = 26/232 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKV---PMWIRNTKHGWITAEYGMLP 67
R + + V+K A G+ +V++G++ +L+ A + +K+ + + G P
Sbjct: 13 RPLVVEIGQVAKQANGAAVVRYGESTILSAAVMSKKMSTGDFFPLQVNYEEKMYAAGKFP 72
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R GR + R+I R +R + Q+I D
Sbjct: 73 GGFNKR------EGRPTTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDEDASAPM 126
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
AA+ G+ +A G +A + + G I++ + +
Sbjct: 127 AAMFGSSLA-------------LSISDIPFNGPIAGVQVAYIDGEFIINPSAAQKEASLL 173
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
+ T I V+ A+ S+D L + + +LI Q+++++
Sbjct: 174 ELTVAGTKD-AINMVESGAKE--LSEDIMLEALLKGHEAVRELIAFQEEIVA 222
>gi|242310417|ref|ZP_04809572.1| nucleotidyltransferase [Helicobacter pullorum MIT 98-5489]
gi|239522815|gb|EEQ62681.1| nucleotidyltransferase [Helicobacter pullorum MIT 98-5489]
Length = 714
Score = 143 bits (360), Expect = 2e-32, Method: Composition-based stats.
Identities = 45/242 (18%), Positives = 80/242 (33%), Gaps = 22/242 (9%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW------IRNTK 55
R GR ++R IS+ A S L G T L ATL + + +
Sbjct: 333 RADGRGLKEVRPISIDTNFLPNAHSSVLFTRGQTQALVVATLGGDMDAQSYELLTNKASS 392
Query: 56 HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115
Y P S G A R+ G RAL + + + R I +
Sbjct: 393 KERFMVHYNFPPFSVGEASSISAPGRRELGHGNL----AKRALEASIINGDM--RTIRLV 446
Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIV 175
++++++G + A + G +AL + V + + ++
Sbjct: 447 SEILESNGSSSMATVCGGSLALVAAGIECTSLVAGVAMGLVCENDKYVVLTDIM------ 500
Query: 176 DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
ED D+D + G I +Q + + LN AK+ ++ L +
Sbjct: 501 ---GLEDHDGDMDFKVAGSRHG-ITAMQMDIKLGGLNMQILKDALNQAKEARNHILNLME 556
Query: 236 DV 237
+
Sbjct: 557 EA 558
Score = 71.4 bits (173), Expect = 1e-10, Method: Composition-based stats.
Identities = 26/223 (11%), Positives = 62/223 (27%), Gaps = 29/223 (13%)
Query: 20 VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGNRVKREAV 79
+K GS ++ G+ +L T ++ + + E
Sbjct: 20 FAKQCSGSVYLQSGNNVVLATVAIDTQEVVEEDFLPLTVQYIEKAYAAGKFP--GGYIKR 77
Query: 80 SGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVALHD 139
+ G R++ R+LR + QI I ++ A
Sbjct: 78 EAKPGDFETLSARIVDRSLRPLFPKGYCYPTQITILV-------------LSADQDADLQ 124
Query: 140 CLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHI 199
L + + L V+A+ G + +++ + +D + +
Sbjct: 125 LLALNAASAALYVSEIPLYSPVSAVRIGKIGDNFVINPSLKQLEESSLDLFVSGVNED-L 183
Query: 200 VEVQGSAERA-------------TFSQDHFFAMLNLAKDRIAD 229
+ ++ ++ L +AK+ I+
Sbjct: 184 LMIEMRTFGGIKTQEGQAIFSANELQEEEMIEALEIAKNAISQ 226
>gi|88801520|ref|ZP_01117048.1| putative polyribonucleotide nucleotidyltransferase [Polaribacter
irgensii 23-P]
gi|88782178|gb|EAR13355.1| putative polyribonucleotide nucleotidyltransferase [Polaribacter
irgensii 23-P]
Length = 746
Score = 143 bits (360), Expect = 2e-32, Method: Composition-based stats.
Identities = 43/243 (17%), Positives = 78/243 (32%), Gaps = 18/243 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
+RL GR+ +++R I GS + G+T L T TL +
Sbjct: 317 LRLDGRKTDEIRPIWSEVDYLPSVHGSAIFTRGETQALATVTLGTSRDANKIDMPSFEGE 376
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P TG S R+ G R L+ ++ + +
Sbjct: 377 ENFYLHYNFPPFCTGEARPIRGTSRREVGHGNL----AQRGLKGMIPTD--CPYTVRVVS 430
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V++++G + A + +AL D M + + + + D
Sbjct: 431 EVLESNGSSSMATVCAGTMALMDAGVQMIRPVSGIAMGLISDAESG-------KYAVLSD 483
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T G I Q + + L A++ ++ +
Sbjct: 484 ILGDEDHLGDMDFKVTGTSEG-ITACQMDIKVKGLGYEILVNALKQAREGRLHILGKITE 542
Query: 237 VIS 239
IS
Sbjct: 543 TIS 545
Score = 97.2 bits (240), Expect = 2e-18, Method: Composition-based stats.
Identities = 35/232 (15%), Positives = 70/232 (30%), Gaps = 26/232 (11%)
Query: 7 QENQMREISLTRR-VSKYAEGSCLVKFGDTHLLTTATL---EEKVPMWIRNTKHGWITAE 62
REIS+ ++K A GS +V+ G +L T ++ + + A
Sbjct: 11 DLGDGREISIETGKLAKQAHGSVVVQSGKCMMLCTVVSNYEQKDLGFLPLTVDYREKFAA 70
Query: 63 YGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQAD 122
G P R R R++ R LR + Q++I D
Sbjct: 71 AGRYPGGFFKR------EARPSDGEVLTMRLVDRVLRPLFPKDYTAETQVMIQLMSHDED 124
Query: 123 GGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGED 182
+ + + + ++ G + G I++ +
Sbjct: 125 VMPDA-------------MAGLAASAAIQLSDFPFECAISEARVGRINGKFIINPTRAQL 171
Query: 183 STIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
+ D+D + ++ V+ E S++ + A + I Q
Sbjct: 172 AESDIDMMI-GASADSVMMVE--GEMDEISEEEMADAIKFAHEAIKVQCAAQ 220
>gi|288800995|ref|ZP_06406451.1| polyribonucleotide nucleotidyltransferase [Prevotella sp. oral
taxon 299 str. F0039]
gi|288331929|gb|EFC70411.1| polyribonucleotide nucleotidyltransferase [Prevotella sp. oral
taxon 299 str. F0039]
Length = 743
Score = 143 bits (360), Expect = 2e-32, Method: Composition-based stats.
Identities = 48/242 (19%), Positives = 86/242 (35%), Gaps = 18/242 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHG 57
RL GR+ +++R I GS L G+T L+T T L+EK+ + + +
Sbjct: 325 RLDGRKPDEIRPIWCEVSTLPMPHGSALFTRGETQSLSTCTLGSKLDEKMVDDVLDKSYQ 384
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P STG + V R+ G R L+ + + +
Sbjct: 385 RFLLHYNFPPFSTGEAKAQRGVGRREVGHGHL----AWRGLKGQIPAD--FPYTVRLVSQ 438
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+++++G + A + ++L D M+ + + + G + D+
Sbjct: 439 ILESNGSSSMATVCAGTLSLMDAGVPMKAPVSGIAMGLIKN-------PGEEKYAVLSDI 491
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T G I Q + S + L AK ++ +
Sbjct: 492 LGDEDHLGDMDFKTTGTLKG-ITATQMDIKCDGLSFEILEKALMQAKAGREHILSKMTET 550
Query: 238 IS 239
IS
Sbjct: 551 IS 552
Score = 110 bits (275), Expect = 2e-22, Method: Composition-based stats.
Identities = 41/237 (17%), Positives = 75/237 (31%), Gaps = 20/237 (8%)
Query: 7 QENQMREISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGM 65
Q + R IS+ V+K A+GS ++ G+T LL T + E
Sbjct: 9 QLSDGRFISVETGKVAKQADGSAVITMGNTVLLATVCAAKDAVPGTDFMPLQVDYREQYS 68
Query: 66 LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125
G+ R++ RALR + + + +
Sbjct: 69 AAGRFP--GGFTKREGKASDNEILTSRLVDRALRPLFPSNYHAEVYVQVMLLSADGVDQP 126
Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185
A A AL ++ + + G +V+ + +
Sbjct: 127 DALAGFAASAALAC-------------SDIPFDFPISEVRVARINGEYVVNPTFQQMENA 173
Query: 186 DVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNEV 242
D+D T +I+ V+ E S+ L +A + I + LQ + +S E+
Sbjct: 174 DMDLMVGATKD-NILMVE--GEMDEVSEQELIEALKVAHEAIKPMCDLQTE-LSKEL 226
>gi|307155205|ref|YP_003890589.1| polyribonucleotide nucleotidyltransferase [Cyanothece sp. PCC 7822]
gi|306985433|gb|ADN17314.1| polyribonucleotide nucleotidyltransferase [Cyanothece sp. PCC 7822]
Length = 718
Score = 143 bits (360), Expect = 2e-32, Method: Composition-based stats.
Identities = 47/246 (19%), Positives = 89/246 (36%), Gaps = 20/246 (8%)
Query: 1 MRLSGRQENQMREISLTRRVSKY-AEGSCLVKFGDTHLLTTATLE-----EKVPMWIRNT 54
+R+ GR+ +++R IS + GS L G T +L+ ATL +++ +
Sbjct: 323 VRVDGRKLDEVRPISCRVGLLPQRVHGSGLFCRGLTQVLSLATLGTPGDAQELADDLHPE 382
Query: 55 KHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIII 114
Y P S G + R+ G RA+ V+ + +
Sbjct: 383 DEKRYLHHYNFPPYSVGETRPMRSPGRREIGHGAL----AERAITPVLPTQQEFPYVVRV 438
Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPI 174
+V+ ++G T ++ G+ +AL D + + + + +G +
Sbjct: 439 VSEVLSSNGSTSMGSVCGSTLALMDAGVPITKPVSGAAMGLIKEGDEV---------RIL 489
Query: 175 VDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
D+ ED D+D TD+G I +Q + S D + A+ ++
Sbjct: 490 TDIQGIEDFLGDMDFKVAGTDNG-ITALQMDMKITGLSMDIVAKAIEQARPARLHILDKM 548
Query: 235 KDVISN 240
VI
Sbjct: 549 LSVIEQ 554
Score = 104 bits (259), Expect = 1e-20, Method: Composition-based stats.
Identities = 54/233 (23%), Positives = 89/233 (38%), Gaps = 26/233 (11%)
Query: 10 QMREISLTRRV-SKYAEGSCLVKFGDTHLLTTAT---LEEKVPMWIRNTKHGWITAEYGM 65
R+I L + + A GS L++ GDT +L TAT E V + G
Sbjct: 11 DGRDIRLKLGLLAPQAGGSVLIQSGDTAVLVTATKVPGREGVDFLPLTVDYEERLYAAGR 70
Query: 66 LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125
+P R GR ++ I R+I R LR + Q+I + +
Sbjct: 71 IPGGFLRR------EGRPPEKAILISRLIDRPLRPLFPHWLRDDLQVIATTLSMDEEVPP 124
Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185
A+TGA +A+ +AA+ G++ I++ Y E +T
Sbjct: 125 DVLAVTGASLAVILAKIPFFG-------------PMAAVRVGLVGDDFIINPTYKEINTG 171
Query: 186 DVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
D+D + G +V V+ A + + ++ + + DLI Q DVI
Sbjct: 172 DLDLVVAGSPEG-VVMVEAGANQ--LPEQDIIEAIDFGYEAVRDLIAAQLDVI 221
>gi|254780784|ref|YP_003065197.1| polynucleotide phosphorylase/polyadenylase [Candidatus Liberibacter
asiaticus str. psy62]
gi|254040461|gb|ACT57257.1| polynucleotide phosphorylase/polyadenylase [Candidatus Liberibacter
asiaticus str. psy62]
Length = 699
Score = 143 bits (360), Expect = 2e-32, Method: Composition-based stats.
Identities = 55/244 (22%), Positives = 93/244 (38%), Gaps = 18/244 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
+R+ GR +R+IS + + GS L GDT + TL +E+ + T+
Sbjct: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y LP +TG + A S R+ G + RA+ V+ +A + I
Sbjct: 372 NDFMMHYNFLPCATGEVSRMGAPSRREIGHGRL----ARRAIHPVLPQTAQFPYTLRIVS 427
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
++ ++DG + A + G+ +AL D + + V G I
Sbjct: 428 EITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSD--------- 478
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED +D TDSG I +Q + S++ L AK ++
Sbjct: 479 ISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
Query: 237 VISN 240
V+S
Sbjct: 538 VLSE 541
Score = 100 bits (248), Expect = 2e-19, Method: Composition-based stats.
Identities = 38/230 (16%), Positives = 77/230 (33%), Gaps = 28/230 (12%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTKHGWITAEYGML 66
R + L +++ ++G+ L +G+T +L T +L++ + + T G +
Sbjct: 14 RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKI 73
Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
P R R I RMI R++R + Q+II+ +
Sbjct: 74 PGGYLRR------ESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127
Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
++ A AL +G V + G +++ ED
Sbjct: 128 VVSMVAASAALM-------------LSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGS 173
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+D T ++ V+ A + S+D + + +I+
Sbjct: 174 LDLFVSGTQD-AVLMVELEANQ--LSEDVVLDAIIFGHNECKPVIEAISK 220
>gi|288904442|ref|YP_003429663.1| polynucleotide phosphorylase (PNPase) [Streptococcus gallolyticus
UCN34]
gi|306830475|ref|ZP_07463645.1| polyribonucleotide nucleotidyltransferase [Streptococcus
gallolyticus subsp. gallolyticus TX20005]
gi|325977438|ref|YP_004287154.1| polyribonucleotide nucleotidyltransferase [Streptococcus
gallolyticus subsp. gallolyticus ATCC BAA-2069]
gi|288731167|emb|CBI12715.1| polynucleotide phosphorylase (PNPase) [Streptococcus gallolyticus
UCN34]
gi|304427500|gb|EFM30602.1| polyribonucleotide nucleotidyltransferase [Streptococcus
gallolyticus subsp. gallolyticus TX20005]
gi|325177366|emb|CBZ47410.1| polyribonucleotide nucleotidyltransferase [Streptococcus
gallolyticus subsp. gallolyticus ATCC BAA-2069]
Length = 727
Score = 143 bits (360), Expect = 2e-32, Method: Composition-based stats.
Identities = 43/242 (17%), Positives = 79/242 (32%), Gaps = 18/242 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56
+R GR+ +++R + GS L G T L+ T E ++ +
Sbjct: 317 IRPDGRRVDEIRPLDAEIDYLPKVHGSGLFTRGQTQALSVLTLAPMGETQIVDGLDPEYK 376
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y S G + A R+ G RAL V+ I +
Sbjct: 377 KRFLHHYNFPQYSVGETGRYGAPGRREIGHGALG----ERALAQVLPSLEEFPYAIRLVA 432
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V++++G + A+I +AL ++ + + + D
Sbjct: 433 EVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISD---------GSNYTILTD 483
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T G I +Q + + L AK +++ L +
Sbjct: 484 IQGLEDHFGDMDFKVAGTREG-ITALQMDIKIEGITPQILKEALAQAKKARFEILDLIEA 542
Query: 237 VI 238
I
Sbjct: 543 TI 544
Score = 106 bits (264), Expect = 3e-21, Method: Composition-based stats.
Identities = 40/232 (17%), Positives = 83/232 (35%), Gaps = 26/232 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKV---PMWIRNTKHGWITAEYGMLP 67
R + + V+K A G+ +V++G++ +L+ A + +K+ + + G P
Sbjct: 13 RPLVVEIGQVAKQANGAAVVRYGESTILSAAVMSKKMSTGDFFPLQVNYEEKMYAAGKFP 72
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R GR + R+I R +R + Q+I D
Sbjct: 73 GGFNKR------EGRPTTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDEDASAPM 126
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
AA+ G+ +A G +A + + G I++ + +
Sbjct: 127 AAMFGSSLA-------------LSISDIPFNGPIAGVQVAYIDGEFIINPSAAQKEASLL 173
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
+ T I V+ A+ S+D L + + +LI Q+++++
Sbjct: 174 ELTVAGTKD-AINMVESGAKE--LSEDIMLEALLKGHEAVRELIAFQEEIVA 222
>gi|326202154|ref|ZP_08192024.1| polyribonucleotide nucleotidyltransferase [Clostridium
papyrosolvens DSM 2782]
gi|325987949|gb|EGD48775.1| polyribonucleotide nucleotidyltransferase [Clostridium
papyrosolvens DSM 2782]
Length = 706
Score = 143 bits (360), Expect = 2e-32, Method: Composition-based stats.
Identities = 44/242 (18%), Positives = 79/242 (32%), Gaps = 16/242 (6%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHG 57
R+ GR +++R +S + GS L + G T +LTT T + + I +
Sbjct: 315 RVDGRSLDEIRPLSAEVGILPRTHGSGLFQRGQTQVLTTITLGAMGDVQKMDGIDTEETK 374
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y S G R+ G R+L V+ + +
Sbjct: 375 RYMHHYNFPGYSVGEAKTSRGPGRREIGHGAL----AERSLVPVIPTEIEFPYAFRLVSE 430
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
V+ ++G T ++ G+ +AL D ++ V+ +D+
Sbjct: 431 VLMSNGSTSQGSVCGSTLALMDAGVPIKAPVAGISAGLVIDEE------NPDNFVTFMDI 484
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI-KLQKD 236
ED D+D T G I +Q + + + L K +I +
Sbjct: 485 QGIEDFFGDMDFKVAGTTEG-ITAIQMDIKVDGLNYEIIRQAFELTKKGRLQIINDVILK 543
Query: 237 VI 238
I
Sbjct: 544 AI 545
Score = 102 bits (254), Expect = 4e-20, Method: Composition-based stats.
Identities = 34/234 (14%), Positives = 79/234 (33%), Gaps = 27/234 (11%)
Query: 12 REISLTRRVSKY-AEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKHGWITAEYGML 66
R +++ A GS L+++GDT ++++AT + + + + + G +
Sbjct: 15 RTLTVETGKLAQLANGSALIRYGDTVIMSSATASASPRDGIDFFPLSVDYEERLYAVGKI 74
Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
P R G+ ++ R+I R +R + ++ ++ D
Sbjct: 75 PGGFIKR------EGKPSEKAILTSRVIDRPIRPLFPKDLRNDVAVVNTVMSVEQDNSPE 128
Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
AA+ GA VA G + + G++ G +V+ + + +
Sbjct: 129 IAAMIGASVA-------------ISISDIPFNGPIGGVVLGLVDGEVVVNPNEEQRAKSK 175
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
+ T I ++ A+ D + + I + ++
Sbjct: 176 MYVTLAGTKE-KITMIEAGADI--VDDDVMLDAIKKGHEVIKQICDFINGIVKE 226
>gi|55820183|ref|YP_138625.1| polynucleotide phosphorylase/polyadenylase [Streptococcus
thermophilus LMG 18311]
gi|55822071|ref|YP_140512.1| polynucleotide phosphorylase/polyadenylase [Streptococcus
thermophilus CNRZ1066]
gi|81559948|sp|Q5M1W9|PNP_STRT1 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|81561123|sp|Q5M6F9|PNP_STRT2 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|55736168|gb|AAV59810.1| polynucleotide phosphorylase, (PNPase) [Streptococcus thermophilus
LMG 18311]
gi|55738056|gb|AAV61697.1| polynucleotide phosphorylase, (PNPase) [Streptococcus thermophilus
CNRZ1066]
Length = 741
Score = 143 bits (360), Expect = 2e-32, Method: Composition-based stats.
Identities = 42/244 (17%), Positives = 82/244 (33%), Gaps = 18/244 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
+R GR+ +++R + GS L G T L+ TL + ++ +
Sbjct: 317 IRPDGRRVDEIRPLDAEIDFLPNVHGSGLFTRGQTQALSVLTLAPMSDTQLVDGLDPEYK 376
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y S G + A R+ G RAL V+ I +
Sbjct: 377 KRFLHHYNFPQYSVGETGRYGAPGRREIGHGALG----ERALAQVLPSVEEFPYAIRLVA 432
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V++++G + A+I +AL ++ + + + D
Sbjct: 433 EVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISD---------GTNYTVLTD 483
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T G I +Q + + + L AK +++ + +
Sbjct: 484 IQGLEDHFGDMDFKVAGTRLG-ITALQMDIKISGITPAILEEALAQAKVARFEILDVIES 542
Query: 237 VISN 240
I+
Sbjct: 543 AIAE 546
Score = 107 bits (267), Expect = 1e-21, Method: Composition-based stats.
Identities = 41/230 (17%), Positives = 77/230 (33%), Gaps = 26/230 (11%)
Query: 10 QMREISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKV---PMWIRNTKHGWITAEYGM 65
+ R + + V+K A G+ +V++GDT +L+ A + +K+ + + G
Sbjct: 11 EGRPLVVEVGQVAKQANGAVVVRYGDTTVLSVAVMSKKMATANFFPLQVNYEEKMYAAGK 70
Query: 66 LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125
P R GR + R+I R +R + Q+I +
Sbjct: 71 FPGGFSKR------EGRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDENASA 124
Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185
AA+ G+ +A G +A + I++ +
Sbjct: 125 PMAAMFGSSLA-------------LSISDIPFNGPIAGVQVAYAAEDFIINPSASDKEVS 171
Query: 186 DVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
+D T I V+ A+ S+D L + I +L+ Q
Sbjct: 172 HLDLIVAGTKE-AINMVEAGAQE--LSEDIMLQALLKGHEAIQELVDFQN 218
>gi|293364915|ref|ZP_06611632.1| polyribonucleotide nucleotidyltransferase [Streptococcus oralis
ATCC 35037]
gi|291316365|gb|EFE56801.1| polyribonucleotide nucleotidyltransferase [Streptococcus oralis
ATCC 35037]
Length = 754
Score = 143 bits (360), Expect = 2e-32, Method: Composition-based stats.
Identities = 42/244 (17%), Positives = 80/244 (32%), Gaps = 18/244 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56
+R GR+ +++R + GS L G T L+ T E ++ +
Sbjct: 334 VRPDGRKVDEIRPLDAQVDYLPRVHGSGLFTRGQTQALSVLTLAPMGETQIIDGLDPEYK 393
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y S G + A R+ G RAL V+ I +
Sbjct: 394 KRFMHHYNFPQYSVGETGRYGAPGRREIGHGALG----ERALAQVLPSLEEFPYAIRLVA 449
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V++++G + A+I +AL ++ + + + D
Sbjct: 450 EVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISD---------GNNYTVLTD 500
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T G I +Q + + + L AK +++ + +
Sbjct: 501 IQGLEDHFGDMDFKVAGTRDG-ITALQMDIKIQGITAEILTEALAQAKKARFEILDVIEA 559
Query: 237 VISN 240
I
Sbjct: 560 TIPE 563
Score = 111 bits (278), Expect = 7e-23, Method: Composition-based stats.
Identities = 41/232 (17%), Positives = 85/232 (36%), Gaps = 26/232 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKV---PMWIRNTKHGWITAEYGMLP 67
RE+ + V+K A GS ++++G++ +LT A + +K+ + + G P
Sbjct: 30 RELIVETGQVAKQANGSVVIRYGESTVLTAAVMSKKMATGDFFPLQVNYEEKMYAAGKFP 89
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R GR + R+I R +R + Q+I +
Sbjct: 90 GGFMKR------EGRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDDNASAPM 143
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
AA+ G+ +A G +A + G + G I++ + +
Sbjct: 144 AAMFGSSLA-------------LSISDIPFDGPIAGVQVGYVDGQIIINPTQEQAEQSLL 190
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
+ T I V+ A+ S++ L + + +LI Q+++++
Sbjct: 191 ELTVAGTKH-AINMVESGAKE--LSEEIMLEALLKGHEAVKELIAFQEEIVA 239
>gi|162456258|ref|YP_001618625.1| ribonuclease PH [Sorangium cellulosum 'So ce 56']
gi|161166840|emb|CAN98145.1| ribonuclease PH [Sorangium cellulosum 'So ce 56']
Length = 257
Score = 143 bits (360), Expect = 2e-32, Method: Composition-based stats.
Identities = 102/240 (42%), Positives = 134/240 (55%), Gaps = 3/240 (1%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R GR + R + + + AEGS L + G T +L TA++E VP W+ GW+TA
Sbjct: 3 RPDGRALDVHRPVEMILGFHRNAEGSVLYRAGRTVVLCTASVEPTVPAWMMGKGAGWLTA 62
Query: 62 EYGMLPRSTGNRVKREAVSGR-QGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
EY M PRS+ R + G+ GR+QEIQR+IGRALR+ +DL LG + I IDCDV++
Sbjct: 63 EYQMHPRSSPARREPRDGRGKAPSGRTQEIQRLIGRALRAAIDLKHLGEQTIAIDCDVLE 122
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+IT +VAL L M + + VAAIS G L G +DL Y
Sbjct: 123 ADGGTRTASITAGFVALALALDRMRAAGSLEAPVL--RDQVAAISVGHLPGGLALDLVYT 180
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
EDS+ VD N V T G IVEVQ +AE + M +LA +A L Q +S+
Sbjct: 181 EDSSARVDMNVVATAVGSIVEVQATAEDEAIPRAELDRMTDLALAGVASLASAQHRALSS 240
>gi|296877279|ref|ZP_06901319.1| polyribonucleotide nucleotidyltransferase [Streptococcus
parasanguinis ATCC 15912]
gi|296431799|gb|EFH17606.1| polyribonucleotide nucleotidyltransferase [Streptococcus
parasanguinis ATCC 15912]
Length = 785
Score = 143 bits (360), Expect = 2e-32, Method: Composition-based stats.
Identities = 42/244 (17%), Positives = 80/244 (32%), Gaps = 18/244 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56
+R GR+ +++R + GS L G T L+ T E ++ +
Sbjct: 362 VRPDGRKVDEIRPLDAQVDYLPRVHGSGLFTRGQTQALSVLTLAPMGETQIIDGLDPEYK 421
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y S G + A R+ G RAL V+ I +
Sbjct: 422 KRFMHHYNFPQYSVGETGRYGAPGRREIGHGALG----ERALAQVLPSLEEFPYAIRLVA 477
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V++++G + A+I +AL ++ + + + D
Sbjct: 478 EVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISD---------GNNYTVLTD 528
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T G I +Q + + + L AK +++ + +
Sbjct: 529 IQGLEDHFGDMDFKVAGTRDG-ITALQMDIKIQGITAEILTEALAQAKKARFEILDVIEA 587
Query: 237 VISN 240
I
Sbjct: 588 TIPE 591
Score = 108 bits (270), Expect = 5e-22, Method: Composition-based stats.
Identities = 41/231 (17%), Positives = 84/231 (36%), Gaps = 26/231 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKV---PMWIRNTKHGWITAEYGMLP 67
RE+ + V+K A G+ +V++G++ +LT A + +K+ + + G P
Sbjct: 58 RELIVETGQVAKQANGAVVVRYGESTVLTAAVMSKKMATGDFFPLQVNYEEKMYAAGKFP 117
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R GR + R+I R +R + Q+I +
Sbjct: 118 GGFMKR------EGRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDENASAPM 171
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
AA+ G+ +A G +A + G + G I++ + +
Sbjct: 172 AAMFGSSLA-------------LSISDIPFDGPIAGVQVGYVDGEIIINPTQEQAERSLL 218
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
+ T I V+ A+ S++ L + + +LI Q++++
Sbjct: 219 ELTVAGTKH-AINMVESGAKE--LSEEIMLEALLKGHEAVKELIAFQEEIV 266
>gi|207723868|ref|YP_002254266.1| polyribonucleotide nucleotidyltransferase protein [Ralstonia
solanacearum MolK2]
gi|206589073|emb|CAQ36035.1| polyribonucleotide nucleotidyltransferase protein [Ralstonia
solanacearum MolK2]
Length = 752
Score = 143 bits (360), Expect = 2e-32, Method: Composition-based stats.
Identities = 43/265 (16%), Positives = 84/265 (31%), Gaps = 32/265 (12%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +R I + V A GS L G+T L ATL +E++ ++
Sbjct: 315 RIDGRDTRTVRPIEIRSSVLPRAHGSALFTRGETQALVVATLGTKSDEQIIDALQGEYRD 374
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y M P +TG + + R+ G + RAL V+ + I + +
Sbjct: 375 RFMLHYNMPPFATGETGRVGSPKRREIGHGRL----AKRALIPVLPKDDEFAYTIRLVSE 430
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQV--------------------- 156
+ +++G + A++ G +AL D ++ + +
Sbjct: 431 ITESNGSSSMASVCGGCLALMDAGVPVKAHVAGVAMGLILXXXXXXXXXXXXXXXXXXXX 490
Query: 157 --LKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQD 214
D+D T I +Q + +++
Sbjct: 491 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGDMDFKVAGT-DNCITALQMDIKVQGITKE 549
Query: 215 HFFAMLNLAKDRIADLIKLQKDVIS 239
L AK+ ++ + +
Sbjct: 550 IMQVALAQAKEGRLHILGKMQSAMG 574
Score = 94.5 bits (233), Expect = 1e-17, Method: Composition-based stats.
Identities = 37/233 (15%), Positives = 76/233 (32%), Gaps = 31/233 (13%)
Query: 13 EISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT----KHGWITAEYGMLP 67
++ + +++ A G+ L+ DT +L T + + T G +P
Sbjct: 15 KVRMETGEIARQASGAVLLDMDDTVVLATVVGAKNPKPGQDFFPLTVDYIEKTYAAGKIP 74
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R GR R+I R LR + Q+++ I +
Sbjct: 75 GGFFKR------EGRPSENETLTSRLIDRPLRPLFPEGFYNEVQVVVHVLSINPEVPADI 128
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
A+ A AL G V A G G +++ + + + D+
Sbjct: 129 PALVAASAALAVSG-------------LPFNGPVGAARVGYKDGQYLLNPNRAQLAHSDL 175
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKD----RIADLIKLQKD 236
D T+ ++ V+ A++ S++ + + I + L ++
Sbjct: 176 DLVVAGTER-AVLMVESEAQQ--LSEEVMLGAVVYGHEQMQIAINAIHDLVRE 225
>gi|324998720|ref|ZP_08119832.1| polynucleotide phosphorylase/polyadenylase [Pseudonocardia sp. P1]
Length = 759
Score = 143 bits (360), Expect = 2e-32, Method: Composition-based stats.
Identities = 46/242 (19%), Positives = 86/242 (35%), Gaps = 14/242 (5%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
+R+ GR +R +S V A GS L + G+T +L TL E+ +
Sbjct: 348 VRIDGRGLTDIRPLSAEVEVIPRAHGSALFERGETQILGVTTLNMLRMEQTIDSLGPETS 407
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P STG + + R+ G RAL V+ I
Sbjct: 408 KRYLHHYNFPPFSTGETGRVGSPKRREIGHGAL----AERALLPVLPDREEFPYAIRQVS 463
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+ + ++G T ++ + ++L + ++ + V G + D
Sbjct: 464 EALGSNGSTSMGSVCASTMSLLNAGVPLKAPVAGIAMGLVSDE-----VDGQTRYVALTD 518
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED+ D+D T + +Q + + A L+ AKD ++++ +
Sbjct: 519 ILGAEDAFGDMDFKVAGTKDF-VTALQLDTKLDGIPSEVLAAALSQAKDARLTILEVIGE 577
Query: 237 VI 238
I
Sbjct: 578 AI 579
Score = 74.5 bits (181), Expect = 1e-11, Method: Composition-based stats.
Identities = 37/244 (15%), Positives = 67/244 (27%), Gaps = 32/244 (13%)
Query: 12 REISLTRR-VSKYAEGSCLVKF-GDTHLLTTATLE----EKVPMWIRNTKHGWITAEYGM 65
R + +++ A GS + +T LL+ T ++ + G
Sbjct: 25 RTVRFEAGRLARQAAGSVVAYLDDETMLLSATTASKRPKDQFDFFPLTVDVEERMYAAGR 84
Query: 66 LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125
+P S R GR G + R+I R LR Q+++ +
Sbjct: 85 IPGSFFRR------EGRPGTDAILTCRLIDRPLRPSFVDGLRNEIQVVVTVMSLDPKDPY 138
Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185
AI A + +++ + + + +
Sbjct: 139 DVVAINAASASTQLAGLPFSGPVGGVRVALIANETGTDTQW-------VAFPTHDQLERA 191
Query: 186 DVDANFVM---TDSGHIVEVQGSAERATF----------SQDHFFAMLNLAKDRIADLIK 232
D D I+ V+ A T ++D L AK I L
Sbjct: 192 AFDMVVAGRVVGDDVAIMMVEAEATEKTIELVDGGANAPTEDVVADGLEAAKPFIRSLCV 251
Query: 233 LQKD 236
Q+
Sbjct: 252 AQQQ 255
>gi|119717401|ref|YP_924366.1| polynucleotide phosphorylase/polyadenylase [Nocardioides sp. JS614]
gi|187610316|sp|A1SLJ4|PNP_NOCSJ RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|119538062|gb|ABL82679.1| Polyribonucleotide nucleotidyltransferase [Nocardioides sp. JS614]
Length = 742
Score = 143 bits (360), Expect = 2e-32, Method: Composition-based stats.
Identities = 46/244 (18%), Positives = 86/244 (35%), Gaps = 14/244 (5%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKH 56
+R+ GR +R + V GS L + G+T +L TL+ E+ + KH
Sbjct: 339 VRIDGRGLADIRPLHAEVGVIPRVHGSALFERGETQILGVTTLDMLKMEQQLDTLSPEKH 398
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
+Y P STG + + R+ G RAL V+ I
Sbjct: 399 RRYMHKYVFPPFSTGETGRVGSPKRREVGHGAL----ARRALLPVLPTREEFPYAIRQLS 454
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+ + ++G T ++ + +AL ++ + V + G L + D
Sbjct: 455 EAMGSNGSTSMGSVCASTLALLQAGVPLKAPVAGIAMGLV-----SGEIDGQLQYVALTD 509
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED+ D+D T + +Q + + L A+D ++ + +
Sbjct: 510 ILGAEDAFGDMDFKVAGTREF-VTALQLDTKLDGIPAEVLAQALTQARDARLTILDVMAE 568
Query: 237 VISN 240
I
Sbjct: 569 AIDE 572
Score = 76.0 bits (185), Expect = 4e-12, Method: Composition-based stats.
Identities = 37/241 (15%), Positives = 67/241 (27%), Gaps = 31/241 (12%)
Query: 12 REISLTRRV-SKYAEGSCLVKFGD-THLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRS 69
R + + ++ A G+ + T LL+ T + E
Sbjct: 21 RTVKFETGLLARQAAGAVTAYLDEDTMLLSATTAGKHPKDHFDFFPLTIDVEERMYAAGK 80
Query: 70 TGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAA 129
GR G + R+I R LR Q++I + D A
Sbjct: 81 IP--GSFFRSEGRPGEDAILTCRLIDRPLRPTFKKGLRNEVQVVITVMALNPDTPYDVLA 138
Query: 130 ITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDA 189
I A ++ G V + ++ G + + + D
Sbjct: 139 INAASLSTQ-------------LSGLPFSGPVGGVRVALIEGQWVAFPTHSQLENAVFDM 185
Query: 190 NFVM----TDSGHIVEVQGSAERATF----------SQDHFFAMLNLAKDRIADLIKLQK 235
T I+ V+ A T+ +++ L+ AK I L + Q
Sbjct: 186 VVAGRVTETGDVAIMMVEAEATEQTWDLVRSGTQAPTEEIVAGGLDAAKPFIKQLCEAQV 245
Query: 236 D 236
+
Sbjct: 246 E 246
>gi|194476549|ref|YP_002048728.1| polyribonucleotide nucleotidyltransferase [Paulinella
chromatophora]
gi|171191556|gb|ACB42518.1| polyribonucleotide nucleotidyltransferase [Paulinella
chromatophora]
Length = 724
Score = 143 bits (360), Expect = 2e-32, Method: Composition-based stats.
Identities = 44/242 (18%), Positives = 87/242 (35%), Gaps = 19/242 (7%)
Query: 2 RLSGRQENQMREISLTRRVSK-YAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
R+ GR +++R I + + GS L + G T +L+TATL + + +
Sbjct: 323 RIDGRSLSEIRPIISSVGILPKRVHGSSLFQRGLTQVLSTATLGTPSDAQEMDDLNPATE 382
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P S G + R+ G RA+ V+ + +
Sbjct: 383 KTYLHHYNFPPYSVGETRPMRSPGRREIGHGVL----AERAIAPVLPDKENFPYVLRVVS 438
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V+ ++G T A+ +AL D ++ + + + +G + D
Sbjct: 439 EVLSSNGSTSMGAVCSGTLALMDAGVPLKAPVSGAAMGLIKEGEEV---------RILTD 489
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T+ G I +Q + + +N A+ +++ +
Sbjct: 490 IQGIEDFLGDMDFKVAGTEKG-ITALQMDMKMTGLEMETIAEAINQARPARLHILEKMLE 548
Query: 237 VI 238
I
Sbjct: 549 AI 550
Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats.
Identities = 54/235 (22%), Positives = 85/235 (36%), Gaps = 26/235 (11%)
Query: 10 QMREISLTRR-VSKYAEGSCLVKFGDTHLLTTAT---LEEKVPMWIRNTKHGWITAEYGM 65
REI LT + A GS LV+ GDT +L T T E V + G
Sbjct: 11 DGREIRLTTGRYAPQASGSVLVECGDTAVLVTITRSNSREGVDFLPLTCDYEERLYAAGR 70
Query: 66 LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125
+P S R R R+ I R+I R +R + QI+ C +
Sbjct: 71 IPGSFMRR------ENRPPERAILIARLIDRPMRPLFPSWMRDDIQIVATCLSLDERVPP 124
Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185
A TGA +A +A + G+L I++ Y E
Sbjct: 125 DVLAATGASIATLIAKIPFHG-------------PMATVRVGLLGDDFILNPSYREIERS 171
Query: 186 DVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
D+D T G +V V+ A + ++ ++ + + +LIK Q ++ +
Sbjct: 172 DLDLVVAGTPDG-VVMVEAGANQ--LAEQDVIEAIDFGYEAVVELIKAQNKILQD 223
>gi|221194578|ref|ZP_03567635.1| polyribonucleotide nucleotidyltransferase [Atopobium rimae ATCC
49626]
gi|221185482|gb|EEE17872.1| polyribonucleotide nucleotidyltransferase [Atopobium rimae ATCC
49626]
Length = 733
Score = 143 bits (359), Expect = 2e-32, Method: Composition-based stats.
Identities = 44/241 (18%), Positives = 83/241 (34%), Gaps = 18/241 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +++R I + GS L + G T +L+ TL E + I
Sbjct: 319 RVDGRAADEIRPIMVKPDYLPLVHGSGLFQRGQTQVLSICTLGMLNEWQRLDTIEPVDGK 378
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P TG + + R+ G RAL V+ I + +
Sbjct: 379 RYIHHYNFPPFCTGETGRMGSPKRREIGHGAL----AERALLPVIPSEDEFPYAIRVVSE 434
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
V++++G + A+ G+ +AL D + + + + + + +
Sbjct: 435 VMESNGSSSMASTCGSTLALMDAGVPLVRPVSGVAMGLIQENGKTVVLTD---------I 485
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T G I +Q + + + L A + ++ +
Sbjct: 486 QGLEDFLGDMDFKVTGTTKG-ITAMQMDNKATGLTPEILRQALMQAHEGRMFILNKMLEA 544
Query: 238 I 238
I
Sbjct: 545 I 545
Score = 84.1 bits (206), Expect = 1e-14, Method: Composition-based stats.
Identities = 47/225 (20%), Positives = 78/225 (34%), Gaps = 24/225 (10%)
Query: 16 LTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKV---PMWIRNTKHGWITAEYGMLPRSTG 71
L ++K A G+C+VK GD+ +L TA + ++ + G +P
Sbjct: 17 LEAGELAKQATGACVVKCGDSTVLLTAVVSKERKDYDFFPLTVDFIEKMYAVGRIPGGYL 76
Query: 72 NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAIT 131
R R ++ I RMI R LR QI+ V T ++
Sbjct: 77 KR------EARPSEKATLIARMIDRPLRPSFPEGFRNEVQIVATSLVADQINAVDTISVM 130
Query: 132 GAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANF 191
GA ALH E + I G +V+ Y E D+D
Sbjct: 131 GASAALHIGGVPYEGPLACVR-----------IGRNSETGEFLVNPTYEERDHSDLDLEL 179
Query: 192 VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ + I ++ A S++ + + ++ IA + QK
Sbjct: 180 AGSATF-ISMLEAGAHE--ISEEDMLSAMAFGQEAIAAFCEEQKK 221
>gi|33240756|ref|NP_875698.1| polynucleotide phosphorylase/polyadenylase [Prochlorococcus marinus
subsp. marinus str. CCMP1375]
gi|81664238|sp|Q7VAZ5|PNP_PROMA RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|33238284|gb|AAQ00351.1| Ribonuclease PH [Prochlorococcus marinus subsp. marinus str.
CCMP1375]
Length = 722
Score = 143 bits (359), Expect = 2e-32, Method: Composition-based stats.
Identities = 47/242 (19%), Positives = 88/242 (36%), Gaps = 19/242 (7%)
Query: 2 RLSGRQENQMREISLTRRVSK-YAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
R+ GR +++REIS + GS L + G T +L+TATL + + + +
Sbjct: 323 RVDGRALDEVREISAEAGILPKRVHGSGLFQRGLTQVLSTATLGTPSDAQEMDDLNPSPD 382
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P S G R+ G RA+ V+ + +
Sbjct: 383 KTYIHHYNFPPYSVGETRPMRTPGRREVGHGAL----AERAIIPVLPPKESFPYVLRVVS 438
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V+ ++G T ++ G+ +AL D ++ + + + +G + D
Sbjct: 439 EVLSSNGSTSMGSVCGSTIALLDAGVPLKAPVSGAAMGLIKEGEEV---------RILTD 489
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T+ G I +Q + +N AK +++
Sbjct: 490 IQGIEDFLGDMDFKVAGTEKG-ITALQMDMKMTGLPIKIIGEAINQAKPARTHILEKMVQ 548
Query: 237 VI 238
I
Sbjct: 549 AI 550
Score = 113 bits (283), Expect = 2e-23, Method: Composition-based stats.
Identities = 51/235 (21%), Positives = 90/235 (38%), Gaps = 26/235 (11%)
Query: 10 QMREISLTRR-VSKYAEGSCLVKFGDTHLLTTAT---LEEKVPMWIRNTKHGWITAEYGM 65
REI LT + A GS L++ GDT +L TAT E + + G
Sbjct: 11 DGREIRLTTGRYAPQAGGSVLIECGDTAVLVTATQGQGREGADFLPLSCDYEERLYAAGR 70
Query: 66 LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125
+P S R GR R+ I R+I R LR + Q++ C +
Sbjct: 71 IPGSFMRR------EGRPPERATLISRLIDRPLRPLFPNWMRDDIQVVATCLSLDERVPA 124
Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185
A+TG+ +A +AA+ G+L +++ + E
Sbjct: 125 DILAVTGSSMATLLAGIPFYG-------------PMAAVRVGLLGDDFVLNPSFREIERG 171
Query: 186 DVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
D+D T G +V V+ + + ++ ++ + + +LIK Q+ ++ +
Sbjct: 172 DLDLVVAGTPDG-VVMVEAGSNQ--LTEQDVIEAIDFGYEAVNELIKAQESILKD 223
>gi|312277503|gb|ADQ62160.1| Polyribonucleotide nucleotidyltransferase [Streptococcus
thermophilus ND03]
Length = 741
Score = 143 bits (359), Expect = 2e-32, Method: Composition-based stats.
Identities = 42/244 (17%), Positives = 82/244 (33%), Gaps = 18/244 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
+R GR+ +++R + GS L G T L+ TL + ++ +
Sbjct: 317 IRPDGRRVDEIRPLDAEIDFLPNVHGSGLFTRGQTQALSVLTLAPMSDTQLVDGLDPEYK 376
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y S G + A R+ G RAL V+ I +
Sbjct: 377 KRFLHHYNFPQYSVGETGRYGAPGRREIGHGALG----ERALAQVLPSVEEFPYAIRLVA 432
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V++++G + A+I +AL ++ + + + D
Sbjct: 433 EVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISD---------GTNYTVLTD 483
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T G I +Q + + + L AK +++ + +
Sbjct: 484 IQGLEDHFGDMDFKVAGTRLG-ITALQMDIKISGITPAILEEALAQAKVARFEILDVIES 542
Query: 237 VISN 240
I+
Sbjct: 543 AIAE 546
Score = 109 bits (271), Expect = 4e-22, Method: Composition-based stats.
Identities = 41/230 (17%), Positives = 77/230 (33%), Gaps = 26/230 (11%)
Query: 10 QMREISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKV---PMWIRNTKHGWITAEYGM 65
+ R + + V+K A G+ +V++GDT +L+ A + +K+ + + G
Sbjct: 11 EGRPLVVEVGQVAKQANGAVVVRYGDTTVLSVAVMSKKIATADFFPLQVNYEEKMYAAGK 70
Query: 66 LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125
P R GR + R+I R +R + Q+I +
Sbjct: 71 FPGGFSKR------EGRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDENASV 124
Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185
AA+ G+ +A G +A + I++ +
Sbjct: 125 PMAAMFGSSLA-------------LSISDIPFNGPIAGVQVAYAAEDFIINPSASDKEVS 171
Query: 186 DVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
+D T I V+ A+ S+D L + I +L+ Q
Sbjct: 172 HLDLIVAGTKE-AINMVEAGAQE--LSEDIMLQALLKGHEAIQELVDFQN 218
>gi|225452398|ref|XP_002273777.1| PREDICTED: hypothetical protein [Vitis vinifera]
Length = 997
Score = 143 bits (359), Expect = 2e-32, Method: Composition-based stats.
Identities = 49/243 (20%), Positives = 87/243 (35%), Gaps = 11/243 (4%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56
+R+ GR N++R + GS L GDT +L T T + + +
Sbjct: 368 LRVDGRHLNEVRPLYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPGDAQRLDSLVGPPT 427
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P S KR ++ R+ G +AL +V+ + I+
Sbjct: 428 KRFMLHYSFPPFSINEVGKRVGLNRREVGHGTL----AEKALLAVLPPEEEFPYTVRINS 483
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V+ +DG T A + G +AL D + + + V + + + + + D
Sbjct: 484 EVMASDGSTSMATVCGGSMALMDAGIPLREHVAGISVGLVTEVDPS--TNTIKDYRILTD 541
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T G I +Q + A D L A ++ +
Sbjct: 542 ILGLEDHLGDMDFKIAGTRKG-ITAIQLDIKPAGIPLDIICECLEPALRGRLQILDRMEQ 600
Query: 237 VIS 239
I+
Sbjct: 601 EIN 603
Score = 88.7 bits (218), Expect = 5e-16, Method: Composition-based stats.
Identities = 38/227 (16%), Positives = 70/227 (30%), Gaps = 26/227 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTA---TLEEKVPMWIRNTKHGWITAEYGMLP 67
R I+ ++++A G+ ++ +T +L+T + + G++P
Sbjct: 67 RSITFETGKIARFANGAVVMSMDETKVLSTVASSKGDAARDFLPLTVDYQEKHFAQGVIP 126
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
+ R G R R+I R +R + Q++
Sbjct: 127 TTFMRR------EGAPRERELLCGRLIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPDV 180
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
A AL G + I G +CG IV+ E S D+
Sbjct: 181 MAANATSAALM-------------LSDIPWGGPIGVIRIGRICGQFIVNPSMDELSLSDL 227
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
+ + T + + A S+ A L LA ++ Q
Sbjct: 228 NLVYACTRDKTL-MIDVQARE--ISEKDLEAALRLAHPEAVRYLEPQ 271
>gi|160944532|ref|ZP_02091760.1| hypothetical protein FAEPRAM212_02045 [Faecalibacterium prausnitzii
M21/2]
gi|158444314|gb|EDP21318.1| hypothetical protein FAEPRAM212_02045 [Faecalibacterium prausnitzii
M21/2]
Length = 713
Score = 143 bits (359), Expect = 2e-32, Method: Composition-based stats.
Identities = 48/244 (19%), Positives = 89/244 (36%), Gaps = 19/244 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR N++R ++ + GS + G T +LTT TL + ++ + + +
Sbjct: 322 RVDGRGINEIRPLAAEVGILPRVHGSGMFTRGQTQVLTTCTLGGTKDNQLMDDLTDEQTK 381
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + R+ G RAL V+ I +
Sbjct: 382 RYIHHYNFPPYSVGEARAPRSPGRREIGHGAL----AERALVPVLPSLEEFPYTIRCVSE 437
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
V+ ++G T A+I G+ +AL D ++ + +G ++D+
Sbjct: 438 VLSSNGSTSQASICGSTLALMDAGVPIKAPVAGISCGLITEGE---------RWMTMLDI 488
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI-KLQKD 236
ED D+D T G I +Q + + D + ++ ++ K
Sbjct: 489 QGVEDFHGDMDFKVGGTRKG-ITAIQMDIKIDGLTYDIIAEAFEKCRKGRLYILDEIIKP 547
Query: 237 VISN 240
VI+
Sbjct: 548 VIAE 551
Score = 97.6 bits (241), Expect = 1e-18, Method: Composition-based stats.
Identities = 37/236 (15%), Positives = 76/236 (32%), Gaps = 31/236 (13%)
Query: 12 REISLTRRV---SKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKHGWITAEYG 64
R + A S L+++G+T ++ + E V + N ++ G
Sbjct: 25 RPFKVEMGKMCGLSNA--SALIRYGETCVMCNVVMSPKPREGVDFFPLNVEYEEKLYAAG 82
Query: 65 MLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGG 124
+P S R GR G R+ R++ R +R + I + + D
Sbjct: 83 RIPGSFMRR------EGRPGERAILTSRVVDRPMRPLFPKEMRNDVCITMTVMSLDPDCS 136
Query: 125 TRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDST 184
A + GA + G + + G++ G +++ +
Sbjct: 137 PEIAGMIGASLVT-------------AVSDIPWNGPIGGVQVGLVDGEIVLNPTQEQRKV 183
Query: 185 IDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
D+ T IV ++ A +D + A I +I+ +++
Sbjct: 184 SDLALTVAATMD-KIVMIEAGANE--VDEDTMLTAIKTAHVEIKKIIEFINKIVAE 236
>gi|229146378|ref|ZP_04274749.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus
BDRD-ST24]
gi|228637011|gb|EEK93470.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus
BDRD-ST24]
Length = 717
Score = 143 bits (359), Expect = 3e-32, Method: Composition-based stats.
Identities = 44/244 (18%), Positives = 84/244 (34%), Gaps = 18/244 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56
+R GR+ +++R ++ + GS L G T L+ T + ++ + +
Sbjct: 315 IRPDGRKGDEIRPLASEVGILSRTHGSGLFTRGQTQALSICTLGALGDVQILDGLGVEES 374
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y S G R+ G RAL V+ + +
Sbjct: 375 KRFMHHYNFPSFSVGETRPMRGPGRREIGHGALG----ERALEPVIPSEKDFPYTVRLVS 430
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V++++G T A+I G+ +A+ D ++ + V G + D
Sbjct: 431 EVLESNGSTSQASICGSTLAMMDAGVPLKAPVAGIAMGLVKTGE---------HYTILSD 481
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T G + +Q + S++ L AK ++
Sbjct: 482 IQGMEDHLGDMDFKVAGTAQG-VTALQMDIKIDGLSREILEEALQQAKVGRVHILNHMLS 540
Query: 237 VISN 240
VI
Sbjct: 541 VIPE 544
Score = 114 bits (284), Expect = 1e-23, Method: Composition-based stats.
Identities = 43/231 (18%), Positives = 90/231 (38%), Gaps = 26/231 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEK---VPMWIRNTKHGWITAEYGMLP 67
R++++ ++K A G+ LV++GDT +L+TAT ++ V + + G +P
Sbjct: 15 RQLTVETGQLAKQANGAVLVRYGDTAVLSTATASKEAKNVDFFPLTVNYEERLYAVGKIP 74
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R GR ++ R+I R +R + Q++ + D +
Sbjct: 75 GGFIKR------EGRPSEKAILASRLIDRPIRPLFADGFRNEVQVVSIVMSVDQDCSSEM 128
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
AA+ G+ +A +G +A + G + G +++ + D+
Sbjct: 129 AAMLGSSLA-------------LSISDIPFEGPIAGATVGRINGEFVINPTVEQQEQSDI 175
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
T I V+ A++ ++ + D I LI Q++++
Sbjct: 176 HLVVAGTKD-AINMVEAGADQVP--EETMLEAIMFGHDEIKRLIAFQEEIV 223
>gi|228922561|ref|ZP_04085861.1| Polyribonucleotide nucleotidyltransferase [Bacillus thuringiensis
serovar huazhongensis BGSC 4BD1]
gi|228954083|ref|ZP_04116112.1| Polyribonucleotide nucleotidyltransferase [Bacillus thuringiensis
serovar kurstaki str. T03a001]
gi|229047493|ref|ZP_04193083.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus AH676]
gi|229071305|ref|ZP_04204528.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus F65185]
gi|229081062|ref|ZP_04213572.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus Rock4-2]
gi|229111278|ref|ZP_04240831.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus
Rock1-15]
gi|229129083|ref|ZP_04258056.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus
BDRD-Cer4]
gi|229152007|ref|ZP_04280202.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus m1550]
gi|229191976|ref|ZP_04318946.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus ATCC
10876]
gi|296504303|ref|YP_003666003.1| polynucleotide phosphorylase/polyadenylase [Bacillus thuringiensis
BMB171]
gi|228591527|gb|EEK49376.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus ATCC
10876]
gi|228631356|gb|EEK87990.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus m1550]
gi|228654320|gb|EEL10185.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus
BDRD-Cer4]
gi|228672054|gb|EEL27345.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus
Rock1-15]
gi|228702106|gb|EEL54582.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus Rock4-2]
gi|228711759|gb|EEL63711.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus F65185]
gi|228723740|gb|EEL75095.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus AH676]
gi|228805649|gb|EEM52239.1| Polyribonucleotide nucleotidyltransferase [Bacillus thuringiensis
serovar kurstaki str. T03a001]
gi|228836990|gb|EEM82331.1| Polyribonucleotide nucleotidyltransferase [Bacillus thuringiensis
serovar huazhongensis BGSC 4BD1]
gi|296325355|gb|ADH08283.1| polynucleotide phosphorylase/polyadenylase [Bacillus thuringiensis
BMB171]
Length = 712
Score = 143 bits (359), Expect = 3e-32, Method: Composition-based stats.
Identities = 44/244 (18%), Positives = 84/244 (34%), Gaps = 18/244 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56
+R GR+ +++R ++ + GS L G T L+ T + ++ + +
Sbjct: 315 IRPDGRKGDEIRPLASEVGILSRTHGSGLFTRGQTQALSICTLGALGDVQILDGLGVEES 374
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y S G R+ G RAL V+ + +
Sbjct: 375 KRFMHHYNFPSFSVGETRPMRGPGRREIGHGALG----ERALEPVIPSEKDFPYTVRLVS 430
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V++++G T A+I G+ +A+ D ++ + V G + D
Sbjct: 431 EVLESNGSTSQASICGSTLAMMDAGVPLKAPVAGIAMGLVKTGE---------HYTILSD 481
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T G + +Q + S++ L AK ++
Sbjct: 482 IQGMEDHLGDMDFKVAGTAQG-VTALQMDIKIDGLSREILEEALQQAKVGRVHILNHMLS 540
Query: 237 VISN 240
VI
Sbjct: 541 VIPE 544
Score = 114 bits (284), Expect = 1e-23, Method: Composition-based stats.
Identities = 43/231 (18%), Positives = 90/231 (38%), Gaps = 26/231 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEK---VPMWIRNTKHGWITAEYGMLP 67
R++++ ++K A G+ LV++GDT +L+TAT ++ V + + G +P
Sbjct: 15 RQLTVETGQLAKQANGAVLVRYGDTAVLSTATASKEAKNVDFFPLTVNYEERLYAVGKIP 74
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R GR ++ R+I R +R + Q++ + D +
Sbjct: 75 GGFIKR------EGRPSEKAILASRLIDRPIRPLFADGFRNEVQVVSIVMSVDQDCSSEM 128
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
AA+ G+ +A +G +A + G + G +++ + D+
Sbjct: 129 AAMLGSSLA-------------LSISDIPFEGPIAGATVGRINGEFVINPTVEQQEQSDI 175
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
T I V+ A++ ++ + D I LI Q++++
Sbjct: 176 HLVVAGTKD-AINMVEAGADQVP--EETMLEAIMFGHDEIKRLIAFQEEIV 223
>gi|307703168|ref|ZP_07640114.1| polyribonucleotide nucleotidyltransferase [Streptococcus oralis
ATCC 35037]
gi|307623243|gb|EFO02234.1| polyribonucleotide nucleotidyltransferase [Streptococcus oralis
ATCC 35037]
Length = 737
Score = 143 bits (359), Expect = 3e-32, Method: Composition-based stats.
Identities = 42/244 (17%), Positives = 80/244 (32%), Gaps = 18/244 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56
+R GR+ +++R + GS L G T L+ T E ++ +
Sbjct: 317 VRPDGRKVDEIRPLDAQVDYLPRVHGSGLFTRGQTQALSVLTLAPMGETQIIDGLDPEYK 376
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y S G + A R+ G RAL V+ I +
Sbjct: 377 KRFMHHYNFPQYSVGETGRYGAPGRREIGHGALG----ERALAQVLPSLEEFPYAIRLVA 432
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V++++G + A+I +AL ++ + + + D
Sbjct: 433 EVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISD---------GNNYTVLTD 483
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T G I +Q + + + L AK +++ + +
Sbjct: 484 IQGLEDHFGDMDFKVAGTRDG-ITALQMDIKIQGITAEILTEALAQAKKARFEILDVIEA 542
Query: 237 VISN 240
I
Sbjct: 543 TIPE 546
Score = 111 bits (278), Expect = 8e-23, Method: Composition-based stats.
Identities = 41/232 (17%), Positives = 85/232 (36%), Gaps = 26/232 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKV---PMWIRNTKHGWITAEYGMLP 67
RE+ + V+K A GS ++++G++ +LT A + +K+ + + G P
Sbjct: 13 RELIVETGQVAKQANGSVVIRYGESTVLTAAVMSKKMATGDFFPLQVNYEEKMYAAGKFP 72
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R GR + R+I R +R + Q+I +
Sbjct: 73 GGFMKR------EGRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDDNASAPM 126
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
AA+ G+ +A G +A + G + G I++ + +
Sbjct: 127 AAMFGSSLA-------------LSISDIPFDGPIAGVQVGYVDGQIIINPTQEQAEQSLL 173
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
+ T I V+ A+ S++ L + + +LI Q+++++
Sbjct: 174 ELTVAGTKH-AINMVESGAKE--LSEEIMLEALLKGHEAVKELIAFQEEIVA 222
>gi|270293225|ref|ZP_06199436.1| polyribonucleotide nucleotidyltransferase [Streptococcus sp. M143]
gi|270279204|gb|EFA25050.1| polyribonucleotide nucleotidyltransferase [Streptococcus sp. M143]
Length = 775
Score = 143 bits (359), Expect = 3e-32, Method: Composition-based stats.
Identities = 42/244 (17%), Positives = 80/244 (32%), Gaps = 18/244 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56
+R GR+ +++R + GS L G T L+ T E ++ +
Sbjct: 355 VRPDGRKVDEIRPLDAQVDYLPRVHGSGLFTRGQTQALSVLTLAPMGETQIIDGLDPEYK 414
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y S G + A R+ G RAL V+ I +
Sbjct: 415 KRFMHHYNFPQYSVGETGRYGAPGRREIGHGALG----ERALAQVLPSLEEFPYAIRLVA 470
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V++++G + A+I +AL ++ + + + D
Sbjct: 471 EVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISD---------GNNYTVLTD 521
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T G I +Q + + + L AK +++ + +
Sbjct: 522 IQGLEDHFGDMDFKVAGTRDG-ITALQMDIKIQGITAEILTEALAQAKKARFEILDVIEA 580
Query: 237 VISN 240
I
Sbjct: 581 TIPE 584
Score = 112 bits (280), Expect = 4e-23, Method: Composition-based stats.
Identities = 42/232 (18%), Positives = 85/232 (36%), Gaps = 26/232 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKV---PMWIRNTKHGWITAEYGMLP 67
RE+ + V+K A GS +V++G++ +LT A + +K+ + + G P
Sbjct: 51 RELVVETGQVAKQANGSVVVRYGESTVLTAAVMSKKMATGDFFPLQVNYEEKMYAAGKFP 110
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R GR + R+I R +R + Q+I +
Sbjct: 111 GGFMKR------EGRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDENASAPM 164
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
AA+ G+ +A G +A + G + G I++ + +
Sbjct: 165 AAMFGSSLA-------------LSISDIPFDGPIAGVQVGYVDGQIIINPTQEQAEQSLL 211
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
+ T I V+ A+ S++ L + + +LI Q+++++
Sbjct: 212 ELTVAGTKH-AINMVESGAKE--LSEEIMLEALLKGHEAVKELIAFQEEIVA 260
>gi|228960024|ref|ZP_04121688.1| Polyribonucleotide nucleotidyltransferase [Bacillus thuringiensis
serovar pakistani str. T13001]
gi|228799540|gb|EEM46493.1| Polyribonucleotide nucleotidyltransferase [Bacillus thuringiensis
serovar pakistani str. T13001]
Length = 712
Score = 143 bits (359), Expect = 3e-32, Method: Composition-based stats.
Identities = 44/244 (18%), Positives = 84/244 (34%), Gaps = 18/244 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56
+R GR+ +++R ++ + GS L G T L+ T + ++ + +
Sbjct: 315 IRPDGRKGDEIRPLASEVGILSRTHGSGLFTRGQTQALSICTLGALGDVQILDGLGVEES 374
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y S G R+ G RAL V+ + +
Sbjct: 375 KRFMHHYNFPSFSVGETRPMRGPGRREIGHGALG----ERALEPVIPSEKDFPYTVRLVS 430
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V++++G T A+I G+ +A+ D ++ + V G + D
Sbjct: 431 EVLESNGSTSQASICGSTLAMMDAGVPLKAPVAGIAMGLVKTGE---------HYTILSD 481
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T G + +Q + S++ L AK ++
Sbjct: 482 IQGMEDHLGDMDFKVAGTAQG-VTALQMDIKIDGLSREILEEALQQAKVGRVHILNHMLS 540
Query: 237 VISN 240
VI
Sbjct: 541 VIPE 544
Score = 114 bits (284), Expect = 1e-23, Method: Composition-based stats.
Identities = 43/231 (18%), Positives = 90/231 (38%), Gaps = 26/231 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEK---VPMWIRNTKHGWITAEYGMLP 67
R++++ ++K A G+ LV++GDT +L+TAT ++ V + + G +P
Sbjct: 15 RQLTVETGQLAKQANGAVLVRYGDTAVLSTATASKEAKNVDFFPLTVNYEERLYAVGKIP 74
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R GR ++ R+I R +R + Q++ + D +
Sbjct: 75 GGFIKR------EGRPSEKAILASRLIDRPIRPLFADGFRNEVQVVSIVMSVDQDCSSEM 128
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
AA+ G+ +A +G +A + G + G +++ + D+
Sbjct: 129 AAMLGSSLA-------------LSISDIPFEGPIAGATVGRINGEFVINPTVEQQEQSDI 175
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
T I V+ A++ ++ + D I LI Q++++
Sbjct: 176 HLVVAGTKD-AINMVEAGADQVP--EETMLEAIMFGHDEIKRLIAFQEEIV 223
>gi|229180084|ref|ZP_04307428.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus 172560W]
gi|228603293|gb|EEK60770.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus 172560W]
Length = 712
Score = 143 bits (359), Expect = 3e-32, Method: Composition-based stats.
Identities = 44/244 (18%), Positives = 84/244 (34%), Gaps = 18/244 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56
+R GR+ +++R ++ + GS L G T L+ T + ++ + +
Sbjct: 315 IRPDGRKGDEIRPLASEVGILSRTHGSGLFTRGQTQALSICTLGALGDVQILDGLGVEES 374
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y S G R+ G RAL V+ + +
Sbjct: 375 KRFMHHYNFPSFSVGETRPMRGPGRREIGHGALG----ERALEPVIPSEKDFPYTVRLVS 430
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V++++G T A+I G+ +A+ D ++ + V G + D
Sbjct: 431 EVLESNGSTSQASICGSTLAMMDAGVPLKAPVAGIAMGLVKTGE---------HYTILSD 481
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T G + +Q + S++ L AK ++
Sbjct: 482 IQGMEDHLGDMDFKVAGTAQG-VTALQMDIKIDGLSREILEEALQQAKVGRVHILNHMLS 540
Query: 237 VISN 240
VI
Sbjct: 541 VIPE 544
Score = 114 bits (284), Expect = 1e-23, Method: Composition-based stats.
Identities = 43/231 (18%), Positives = 90/231 (38%), Gaps = 26/231 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEK---VPMWIRNTKHGWITAEYGMLP 67
R++++ ++K A G+ LV++GDT +L+TAT ++ V + + G +P
Sbjct: 15 RQLTVETGQLAKQANGAVLVRYGDTAVLSTATASKEAKNVDFFPLTVNYEERLYAVGKIP 74
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R GR ++ R+I R +R + Q++ + D +
Sbjct: 75 GGFIKR------EGRPSEKAILASRLIDRPIRPLFADGFRNEVQVVSIVMSVDQDCSSEM 128
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
AA+ G+ +A +G +A + G + G +++ + D+
Sbjct: 129 AAMLGSSLA-------------LSISDIPFEGPIAGATVGRINGEFVINPTVEQQEQSDI 175
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
T I V+ A++ ++ + D I LI Q++++
Sbjct: 176 HLVVAGTKD-AINMVEAGADQVP--EETMLEAIMFGHDEIKRLIAFQEEIV 223
>gi|222152456|ref|YP_002561631.1| polynucleotide phosphorylase/polyadenylase [Streptococcus uberis
0140J]
gi|254782739|sp|B9DTE3|PNP_STRU0 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|222113267|emb|CAR40790.1| polyribonucleotide nucleotidyltransferase [Streptococcus uberis
0140J]
Length = 732
Score = 143 bits (359), Expect = 3e-32, Method: Composition-based stats.
Identities = 42/242 (17%), Positives = 80/242 (33%), Gaps = 18/242 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56
+R GR+ +++R + GS L G T L+ T + ++ + +
Sbjct: 317 VRPDGRKVDEIRPLDAQIDFLPKVHGSGLFTRGQTQALSVLTLAPMGDTQIIDGLDDEYK 376
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y S G + A R+ G RAL V+ I +
Sbjct: 377 KRFLHHYNFPQYSVGETGRYGAAGRREIGHGALG----ERALEQVLPSLEEFPYAIRLVA 432
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V++++G + A+I +AL ++ + + + D
Sbjct: 433 EVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISD---------GTNYTVLTD 483
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T G I +Q + + L AK +++ L +
Sbjct: 484 IQGLEDHFGDMDFKVAGTRDG-ITALQMDIKIEGITPQILEEALAQAKKARFEILDLIET 542
Query: 237 VI 238
I
Sbjct: 543 TI 544
Score = 103 bits (256), Expect = 2e-20, Method: Composition-based stats.
Identities = 41/231 (17%), Positives = 83/231 (35%), Gaps = 26/231 (11%)
Query: 13 EISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKV---PMWIRNTKHGWITAEYGMLPR 68
+ + V+K A G+ +V++G++ +LT A + +K+ + + G P
Sbjct: 14 PLVVEVGQVAKQANGATVVRYGESTVLTAAVMSKKMATGDFFPLQVNYEEKMYAAGKFPG 73
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
R GR + R+I R +R + Q+I + A
Sbjct: 74 GFMKR------EGRPSTDATLTARLIDRPIRPMFAEGFRNEIQVINTVLSYDENASAPMA 127
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+ G+ +A G +A + G + G I++ D + ++
Sbjct: 128 AMFGSSLA-------------LSISDIPFNGPIAGVQVGYIDGEFIINPDKAQMEASLLE 174
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
+ I V+ A+ S+D L I +LI Q+++++
Sbjct: 175 LTVAGSKE-AINMVESGAKE--LSEDIMLEALLKGHQAIQELIAFQEEIVA 222
>gi|312862624|ref|ZP_07722865.1| polyribonucleotide nucleotidyltransferase [Streptococcus
vestibularis F0396]
gi|311101884|gb|EFQ60086.1| polyribonucleotide nucleotidyltransferase [Streptococcus
vestibularis F0396]
Length = 745
Score = 143 bits (359), Expect = 3e-32, Method: Composition-based stats.
Identities = 43/244 (17%), Positives = 84/244 (34%), Gaps = 18/244 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
+R GR+ +++R + GS L G T L+ TL + ++ +
Sbjct: 317 VRPDGRRVDEIRPLDAEIDFLPKVHGSGLFTRGQTQALSVLTLAPMSDTQLIDGLDPEYK 376
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y S G+ + A R+ G RAL V+ I +
Sbjct: 377 KRFLHHYNFPQYSVGDTGRYGAPGRREIGHGALG----ERALAQVLPSVEEFPYAIRLVA 432
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V++++G + A+I +AL ++ + + + D
Sbjct: 433 EVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISD---------GTNYTVLTD 483
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T G I +Q + + + L AK +++ + +
Sbjct: 484 IQGLEDHFGDMDFKVAGTRRG-ITALQMDIKISGITPAILEEALAQAKVARFEILDVIEA 542
Query: 237 VISN 240
VI+
Sbjct: 543 VIAE 546
Score = 109 bits (272), Expect = 3e-22, Method: Composition-based stats.
Identities = 41/228 (17%), Positives = 76/228 (33%), Gaps = 26/228 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKV---PMWIRNTKHGWITAEYGMLP 67
R + + V+K A G+ +V++GDT +L+ A + +K+ + + G P
Sbjct: 13 RPLVVEVGHVAKQANGAVVVRYGDTTVLSAAVMSKKMATADFFPLQVNYEEKMYAAGKFP 72
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R GR + R+I R +R + Q+I +
Sbjct: 73 GGFNKR------EGRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDENASAPM 126
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
AA+ G+ +A G +A + I++ + +
Sbjct: 127 AAMFGSSLA-------------LSISDIPFNGPIAGVQVAYAAEDFIINPSASDKDVSQL 173
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
D T I V+ A+ S+D L + I +L+ Q
Sbjct: 174 DLTVAGTKE-AINMVESGAQE--LSEDIMLQALLKGHEAIQELVDFQN 218
>gi|291005562|ref|ZP_06563535.1| ribonuclease PH [Saccharopolyspora erythraea NRRL 2338]
Length = 237
Score = 143 bits (359), Expect = 3e-32, Method: Composition-based stats.
Identities = 103/226 (45%), Positives = 145/226 (64%), Gaps = 1/226 (0%)
Query: 14 ISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGNR 73
+ +TR + GS LV+FG T +L A+++E VP W + GW+TAEY MLP ST R
Sbjct: 1 MRITRGYQDWPAGSVLVEFGRTRVLCAASVQEGVPRWRAGSGLGWVTAEYAMLPSSTNTR 60
Query: 74 VKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGA 133
RE+V GR GGR+ EI R++GR+LR+ +DL+ALG I +DCDVIQADGGTRTAAITGA
Sbjct: 61 SARESVKGRIGGRTHEISRLVGRSLRACIDLAALGENTIALDCDVIQADGGTRTAAITGA 120
Query: 134 WVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVM 193
+VAL D + + + L +AA+S G++ G +DL Y EDS +VD N V
Sbjct: 121 YVALADAITWLSAAGRLTD-PKPLSCSIAAVSVGVVDGRVRLDLPYEEDSRAEVDMNVVA 179
Query: 194 TDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
TD G +VEVQG+ E ATF++ M++ A ++L ++Q + ++
Sbjct: 180 TDHGTLVEVQGTGEGATFTRSTMDKMIDFALAGCSELSRIQSEALA 225
>gi|195978853|ref|YP_002124097.1| polynucleotide phosphorylase/polyadenylase [Streptococcus equi
subsp. zooepidemicus MGCS10565]
gi|226702690|sp|B4U573|PNP_STREM RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|195975558|gb|ACG63084.1| polyribonucleotide nucleotidyltransferase PnpA [Streptococcus equi
subsp. zooepidemicus MGCS10565]
Length = 714
Score = 143 bits (359), Expect = 3e-32, Method: Composition-based stats.
Identities = 42/244 (17%), Positives = 81/244 (33%), Gaps = 18/244 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56
+R GR+ +++R ++ GS L G T L+ T + ++ +
Sbjct: 317 VRPDGRRVDEIRPLAAEIDFLPMVHGSGLFTRGQTQALSVLTLAPMGDTQIIDGLEPEYK 376
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y S G + A R+ G RAL V+ I +
Sbjct: 377 KRFLHHYNFPQYSVGETGRYGAAGRREIGHGALG----ERALAQVLPSLEEFPYAIRLVA 432
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V++++G + A+I +AL ++ + + + D
Sbjct: 433 EVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISD---------GTNYTVLTD 483
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T G I +Q + + L AK +++ L +
Sbjct: 484 IQGLEDHFGDMDFKVAGTRQG-ITALQMDIKIEGITPQILEEALAQAKKARFEILDLIEA 542
Query: 237 VISN 240
I+
Sbjct: 543 TIAE 546
Score = 101 bits (250), Expect = 1e-19, Method: Composition-based stats.
Identities = 40/231 (17%), Positives = 81/231 (35%), Gaps = 26/231 (11%)
Query: 13 EISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKV---PMWIRNTKHGWITAEYGMLPR 68
+ + V+K A G+ +V++G++ +LT A + +K+ + + G P
Sbjct: 14 PLVVEVGQVAKQANGATVVRYGESTVLTAAVMSKKMSTGDFFPLQVNYEEKMYAAGKFPG 73
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
R GR + R+I R +R + Q+I D A
Sbjct: 74 GWMKR------EGRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDEDASAPMA 127
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+ G+ +A G +A + + G I++ D + ++
Sbjct: 128 AMLGSSLA-------------LSISDIPFNGPIAGVQVAYVEGEFIINPDKAQQEASLLE 174
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
T I V+ A+ + L + I +LI Q+++++
Sbjct: 175 LTVAGTKD-AINMVESGAKE--LPEAIMLEALLVGHKAIQELIAFQEEIVA 222
>gi|322517679|ref|ZP_08070542.1| polyribonucleotide nucleotidyltransferase [Streptococcus
vestibularis ATCC 49124]
gi|322123667|gb|EFX95259.1| polyribonucleotide nucleotidyltransferase [Streptococcus
vestibularis ATCC 49124]
Length = 745
Score = 143 bits (359), Expect = 3e-32, Method: Composition-based stats.
Identities = 43/244 (17%), Positives = 83/244 (34%), Gaps = 18/244 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
+R GR+ +++R + GS L G T L+ TL + ++ +
Sbjct: 317 VRPDGRRVDEIRPLDAEIDFLPKVHGSGLFTRGQTQALSVLTLAPMSDTQLVDGLDPEYK 376
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y S G + A R+ G RAL V+ I +
Sbjct: 377 KRFLHHYNFPQYSVGETGRYGAPGRREIGHGALG----ERALAQVLPSIEEFPYAIRLVA 432
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V++++G + A+I +AL ++ + + + D
Sbjct: 433 EVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISD---------GTNYTVLTD 483
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T G I +Q + + + L AK +++ + +
Sbjct: 484 IQGLEDHFGDMDFKVAGTRRG-ITALQMDIKISGITPAILEEALAQAKVARFEILDVIEA 542
Query: 237 VISN 240
VI+
Sbjct: 543 VIAE 546
Score = 109 bits (272), Expect = 3e-22, Method: Composition-based stats.
Identities = 41/228 (17%), Positives = 76/228 (33%), Gaps = 26/228 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKV---PMWIRNTKHGWITAEYGMLP 67
R + + V+K A G+ +V++GDT +L+ A + +K+ + + G P
Sbjct: 13 RPLVVEVGHVAKQANGAVVVRYGDTTVLSAAVMSKKMATADFFPLQVNYEEKMYAAGKFP 72
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R GR + R+I R +R + Q+I +
Sbjct: 73 GGFNKR------EGRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDENASAPM 126
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
AA+ G+ +A G +A + I++ + +
Sbjct: 127 AAMFGSSLA-------------LSISDIPFNGPIAGVQVAYAAEDFIINPSASDKDVSQL 173
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
D T I V+ A+ S+D L + I +L+ Q
Sbjct: 174 DLTVAGTKE-AINMVESGAQE--LSEDIMLQALLKGHEAIQELVDFQN 218
>gi|261492523|ref|ZP_05989076.1| polyribonucleotide nucleotidyltransferase [Mannheimia haemolytica
serotype A2 str. BOVINE]
gi|261496798|ref|ZP_05993172.1| polyribonucleotide nucleotidyltransferase [Mannheimia haemolytica
serotype A2 str. OVINE]
gi|261307545|gb|EEY08874.1| polyribonucleotide nucleotidyltransferase [Mannheimia haemolytica
serotype A2 str. OVINE]
gi|261311682|gb|EEY12832.1| polyribonucleotide nucleotidyltransferase [Mannheimia haemolytica
serotype A2 str. BOVINE]
Length = 716
Score = 143 bits (359), Expect = 3e-32, Method: Composition-based stats.
Identities = 43/241 (17%), Positives = 89/241 (36%), Gaps = 18/241 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR + +R + + V GS L G+T L ATL + ++ + K
Sbjct: 314 RIDGRTVDTVRALDICTSVLPRTHGSALFTRGETQALAVATLGTERDAQIIDELTGEKSD 373
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + + R+ G + R + +V+ + + + +
Sbjct: 374 RFLFHYNFPPYSVGETGRIGSPKRREIGHGRL----AKRGVLAVMPTAEEFPYVVRVVSE 429
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ GA +AL D ++ + V + + +
Sbjct: 430 ITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEDEKFVVLSD---------I 480
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T +G + +Q + + + LN AK ++ + +
Sbjct: 481 LGDEDHLGDMDFKVAGTRTG-VTALQMDIKIEGITPEIMRIALNQAKGARMHILGVMEQA 539
Query: 238 I 238
I
Sbjct: 540 I 540
Score = 91.4 bits (225), Expect = 9e-17, Method: Composition-based stats.
Identities = 34/232 (14%), Positives = 72/232 (31%), Gaps = 27/232 (11%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT----KHGWITAEYGMLPR 68
++L +++ A + + DT + T ++ V + T G +P
Sbjct: 15 VTLETGAIARQATAAVMASMDDTTVFVTVVAKKDVKEGQDFFPLTVDYQERTYAAGRIPG 74
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
R GR I R+I R +R + Q+I +
Sbjct: 75 GFFKR------EGRPSEGETLIARLIDRPVRPLFPEGFFNEIQVIATVVSVNPQISPDLV 128
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+ GA A G + A G + +++ E +D
Sbjct: 129 AMIGASAA-------------LSLSGVPFNGPIGAARVGFINDQFVLNPTTSEQKISRLD 175
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
T ++ V+ A+ +++ A + ++ +I+ K+ +
Sbjct: 176 LVVAGT-DKAVLMVESEADI--LTEEQMLAAVVFGHEQQQVVIENLKEFVKE 224
>gi|218232388|ref|YP_002368608.1| polynucleotide phosphorylase/polyadenylase [Bacillus cereus B4264]
gi|226702617|sp|B7HDT0|PNP_BACC4 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|218160345|gb|ACK60337.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus B4264]
Length = 712
Score = 143 bits (359), Expect = 3e-32, Method: Composition-based stats.
Identities = 44/244 (18%), Positives = 84/244 (34%), Gaps = 18/244 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56
+R GR+ +++R ++ + GS L G T L+ T + ++ + +
Sbjct: 315 IRPDGRKGDEIRPLASEVGILSRTHGSGLFTRGQTQALSICTLGALGDVQILDGLGVEES 374
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y S G R+ G RAL V+ + +
Sbjct: 375 KRFMHHYNFPSFSVGETRPMRGPGRREIGHGALG----ERALEPVIPSEKDFPYTVRLVS 430
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V++++G T A+I G+ +A+ D ++ + V G + D
Sbjct: 431 EVLESNGSTSQASICGSTLAMMDAGVPLKAPVAGIAMGLVKTGE---------HYTILSD 481
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T G + +Q + S++ L AK ++
Sbjct: 482 IQGMEDHLGDMDFKVAGTAQG-VTALQMDIKIDGLSREILEEALQQAKVGRVHILNHMLS 540
Query: 237 VISN 240
VI
Sbjct: 541 VIPE 544
Score = 114 bits (284), Expect = 1e-23, Method: Composition-based stats.
Identities = 43/231 (18%), Positives = 90/231 (38%), Gaps = 26/231 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEK---VPMWIRNTKHGWITAEYGMLP 67
R++++ ++K A G+ LV++GDT +L+TAT ++ V + + G +P
Sbjct: 15 RQLTVETGQLAKQANGAVLVRYGDTAVLSTATASKEAKNVDFFPLTVNYEERLYAVGKIP 74
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R GR ++ R+I R +R + Q++ + D +
Sbjct: 75 GGFIKR------EGRPSEKAILASRLIDRPIRPLFADGFRNEVQVVSIVMSVDQDCSSEM 128
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
AA+ G+ +A +G +A + G + G +++ + D+
Sbjct: 129 AAMLGSSLA-------------LSISDIPFEGPIAGATVGRINGEFVINPTVEQQEQSDI 175
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
T I V+ A++ ++ + D I LI Q++++
Sbjct: 176 HLVVAGTKD-AINMVEAGADQVP--EETMLEAIMFGHDEIKRLIAFQEEIV 223
>gi|86131670|ref|ZP_01050268.1| polyribonucleotide nucleotidyltransferase [Dokdonia donghaensis
MED134]
gi|85818115|gb|EAQ39283.1| polyribonucleotide nucleotidyltransferase [Dokdonia donghaensis
MED134]
Length = 742
Score = 143 bits (359), Expect = 3e-32, Method: Composition-based stats.
Identities = 44/243 (18%), Positives = 78/243 (32%), Gaps = 18/243 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
+RL GRQ +R I GS + G+T L T TL + +
Sbjct: 317 LRLDGRQTVDIRPIWCETDYLPSVHGSAVFTRGETQALATVTLGTSRDANQIDMPSHEGE 376
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P TG S R+ G QR + + + +
Sbjct: 377 ERFYLHYNFPPFCTGEARPIRGTSRREVGHGNLAQRGLKGMVP------DDCPYTVRVVS 430
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V++++G + A + +A+ D M + + + + D
Sbjct: 431 EVLESNGSSSMATVCAGTMAMMDAGIQMTKPVSGIAMGLISDAETG-------KYAVLSD 483
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T+ G I Q + S + L A+ +++ D
Sbjct: 484 ILGDEDHLGDMDFKVTGTEDG-ITACQMDIKVKGLSYEILVNALQQARAGRLHILEKLTD 542
Query: 237 VIS 239
I+
Sbjct: 543 TIA 545
Score = 99.5 bits (246), Expect = 3e-19, Method: Composition-based stats.
Identities = 36/242 (14%), Positives = 72/242 (29%), Gaps = 29/242 (11%)
Query: 7 QENQMREISLTRR-VSKYAEGSCLVKFGDTHLLTTATL---EEKVPMWIRNTKHGWITAE 62
REIS+ ++K A GS +V+ G +L T + V + A
Sbjct: 11 DLGDGREISIETGKLAKQAHGSVVVQSGKCMMLCTVVSNYESKDVDFLPLTVDYREKFAA 70
Query: 63 YGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQAD 122
G P R R R++ R LR + Q++I D
Sbjct: 71 AGRYPGGFFKR------EARPSDGEVLTMRLVDRVLRPLFPKDYHSETQVMIQLMSHDDD 124
Query: 123 GGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGED 182
+ + + + ++ G + G I++ +
Sbjct: 125 VMPDA-------------MAGLAASAAIQLSDFPFECAISEARVGRVNGEFIINPTRAQL 171
Query: 183 STIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK---DVIS 239
D+D + ++ V+ E S++ + A + I + Q + +
Sbjct: 172 EESDIDMMI-GASAESVMMVE--GEMDEISEEEMADAIKFAHEHIKVQCEAQMRLAEAVG 228
Query: 240 NE 241
+
Sbjct: 229 RK 230
>gi|319760252|ref|YP_004124190.1| polyribonucleotide nucleotidyltransferase [Candidatus Blochmannia
vafer str. BVAF]
gi|318038966|gb|ADV33516.1| polyribonucleotide nucleotidyltransferase [Candidatus Blochmannia
vafer str. BVAF]
Length = 697
Score = 143 bits (359), Expect = 3e-32, Method: Composition-based stats.
Identities = 45/239 (18%), Positives = 87/239 (36%), Gaps = 10/239 (4%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+RL GR ++ +REI + V GS L G+T L TL + + G
Sbjct: 315 LRLDGRSQDMIREIDIKIGVLPRTHGSALFTRGETQALVAVTLGTERNAQNLDELTGDRV 374
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
+ M V + G R R+ R + +V+ S I + ++ +
Sbjct: 375 DRFLMHYNFNPYCVGEIGIVGAPKRREIGHGRLAKRGMLAVMPDSNEFPYTIRVVSEITE 434
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
++G + A+I GA +AL D +++ + + + + + ++
Sbjct: 435 SNGSSSMASICGASLALMDAGVPIKESVAGVAMGLIKEENEFVVLSDIIS---------D 485
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
ED D+D G I +Q + + + L +K ++ + VI
Sbjct: 486 EDHIGDMDFKVAGGKQG-ITALQMDIKINGITYEIIHVALEKSKLARLKILNFMEQVIK 543
Score = 92.2 bits (227), Expect = 6e-17, Method: Composition-based stats.
Identities = 39/232 (16%), Positives = 72/232 (31%), Gaps = 27/232 (11%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----HGWITAEYGMLPR 68
I L +++ A S +V DT +L T ++V + + T G P
Sbjct: 16 IILDTGTIARQANASVMVSMDDTTVLVTVVGSDQVKIDQDFFPLVVNYQERTYAAGKFPG 75
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
R GR R+I R +R + QII +
Sbjct: 76 GFFRR------EGRPSESEILTARLIDRPIRPLFPKGFYNDVQIIATVVSVNPQISPDIV 129
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
AI GA A G + G + +++ E + +D
Sbjct: 130 AIIGASAA-------------LSLSDIPFLGPIGVARVGYINNQYVLNPTISELANSKLD 176
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
T+S +I+ V+ +E + S+ + ++ +I ++
Sbjct: 177 LVISGTES-NILMVE--SESSLLSEKEILNAIIFGHEQQQIVIHNINKLVQE 225
>gi|254361252|ref|ZP_04977395.1| polyribonucleotide nucleotidyltransferase [Mannheimia haemolytica
PHL213]
gi|153092748|gb|EDN73791.1| polyribonucleotide nucleotidyltransferase [Mannheimia haemolytica
PHL213]
Length = 716
Score = 143 bits (359), Expect = 3e-32, Method: Composition-based stats.
Identities = 43/241 (17%), Positives = 89/241 (36%), Gaps = 18/241 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR + +R + + V GS L G+T L ATL + ++ + K
Sbjct: 314 RIDGRTVDTVRALDICTSVLPRTHGSALFTRGETQALAVATLGTERDAQIIDELTGEKSD 373
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + + R+ G + R + +V+ + + + +
Sbjct: 374 RFLFHYNFPPYSVGETGRIGSPKRREIGHGRL----AKRGVLAVMPTAEEFPYVVRVVSE 429
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ GA +AL D ++ + V + + +
Sbjct: 430 ITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEDEKFVVLSD---------I 480
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T +G + +Q + + + LN AK ++ + +
Sbjct: 481 LGDEDHLGDMDFKVAGTRTG-VTALQMDIKIEGITPEIMRIALNQAKGARMHILGVMEQA 539
Query: 238 I 238
I
Sbjct: 540 I 540
Score = 91.8 bits (226), Expect = 6e-17, Method: Composition-based stats.
Identities = 34/232 (14%), Positives = 72/232 (31%), Gaps = 27/232 (11%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT----KHGWITAEYGMLPR 68
++L +++ A + + DT + T ++ V + T G +P
Sbjct: 15 VTLETGAIARQATAAVMASMDDTTVFVTVVAKKDVKEGQDFFPLTVDYQERTYAAGRIPG 74
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
R GR I R+I R +R + Q+I +
Sbjct: 75 GFFKR------EGRPSEGETLIARLIDRPVRPLFPEGFFNEIQVIATVVSVNPQISPDLV 128
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+ GA A G + A G + +++ E +D
Sbjct: 129 AMIGASAA-------------LSLSGVPFNGPIGAARVGFINDQFVLNPTTSEQKISRLD 175
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
T ++ V+ A+ +++ A + ++ +I+ K+ +
Sbjct: 176 LVVSGT-DKAVLMVESEADI--LTEEQMLAAVVFGHEQQQVVIENIKEFVKE 224
>gi|189459946|ref|ZP_03008731.1| hypothetical protein BACCOP_00579 [Bacteroides coprocola DSM 17136]
gi|189433319|gb|EDV02304.1| hypothetical protein BACCOP_00579 [Bacteroides coprocola DSM 17136]
Length = 727
Score = 143 bits (359), Expect = 3e-32, Method: Composition-based stats.
Identities = 49/243 (20%), Positives = 89/243 (36%), Gaps = 18/243 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHG 57
RL GR+ ++R I Y GS + G+T L+T T L+EK+ + +
Sbjct: 319 RLDGRKTTEIRPIWCEVGPLPYPHGSSIFTRGETQSLSTVTLGTKLDEKIVDDVLDQHKE 378
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P STG + V R+ G RAL+ + + + D
Sbjct: 379 RFLLHYNFPPFSTGEAKAQRGVGRREIGHGHL----AWRALKGQIPADY--PYCVRVVSD 432
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+++++G + A + +AL D +++ + + + G + D+
Sbjct: 433 ILESNGSSSMATVCAGTLALMDAGVPIKNPVSGIAMGLIKN-------AGEEKYAVLSDI 485
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T +G I Q + + D L AK+ ++ +
Sbjct: 486 LGDEDHLGDMDFKVTGTKNG-ITATQMDIKCDGLTYDILEKALLQAKEGREYILNKLTEC 544
Query: 238 ISN 240
I
Sbjct: 545 IGK 547
Score = 100 bits (249), Expect = 1e-19, Method: Composition-based stats.
Identities = 36/236 (15%), Positives = 71/236 (30%), Gaps = 20/236 (8%)
Query: 8 ENQMREISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGML 66
R I+L ++K A+G+ +++ G+T LL T + E
Sbjct: 11 LGDGRTITLETGKLAKQADGAVMLRMGNTMLLATVCAAKDAVPGTDFMPLQVEYKEKYSA 70
Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
G+ R++ RALR + + + I
Sbjct: 71 FGRFP--GGFTKREGKASDYEILTCRLVDRALRPLFPDNFHAEVYVNIILYSADGVDMPD 128
Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
L + + G ++ + + G +++ + + D
Sbjct: 129 A-------------LAGLAASAALTVSDIPFGGPISEVRVARIDGQFVINPTFEQLEKAD 175
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNEV 242
+D T +I+ V+ E S+ L A + I K Q + + EV
Sbjct: 176 MDLMVAATYE-NIMMVE--GEMNEVSEQDLLEALKAAHEAIKIHCKAQME-LMEEV 227
>gi|54025857|ref|YP_120099.1| polynucleotide phosphorylase/polyadenylase [Nocardia farcinica IFM
10152]
gi|81374135|sp|Q5YSV6|PNP_NOCFA RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|54017365|dbj|BAD58735.1| putative guanosine pentaphosphate synthetase/polyribonucleotide
nucleotidyltransferase [Nocardia farcinica IFM 10152]
Length = 764
Score = 143 bits (359), Expect = 3e-32, Method: Composition-based stats.
Identities = 42/243 (17%), Positives = 82/243 (33%), Gaps = 9/243 (3%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKH 56
R+ GR +R +S V A GS L + G+T +L TL+ + +
Sbjct: 360 FRIDGRGLADIRALSAEVAVVPRAHGSALFERGETQILGVTTLDMVKMAQQVDSLGPETS 419
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P STG + + R+ G RAL V+ I
Sbjct: 420 KRYMHHYNFPPFSTGETGRVGSPKRREIGHGAL----AERALIPVLPSQEDFPYAIRQVS 475
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+ + ++G T ++ + ++L + ++ + V + + D
Sbjct: 476 EALGSNGSTSMGSVCASTLSLLNAGVPLKAPVAGIAMGLVSDTVTNDKGEQEVRYVALTD 535
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED+ D+D T + +Q + L+ A D ++ + +
Sbjct: 536 ILGAEDAFGDMDFKVAGTREF-VTALQLDTKLDGIPSQVLAGALSQAHDARTTILDVMAE 594
Query: 237 VIS 239
I+
Sbjct: 595 AIA 597
Score = 81.8 bits (200), Expect = 7e-14, Method: Composition-based stats.
Identities = 40/245 (16%), Positives = 75/245 (30%), Gaps = 23/245 (9%)
Query: 12 REISLTRR-VSKYAEGSCLVKF-GDTHLLTTATLE----EKVPMWIRNTKHGWITAEYGM 65
R + +++ A GS + +T LL+ T ++ + G
Sbjct: 33 RTVRFETGRLARQAAGSVVAYLDDETMLLSATTAGKTPKDQFDFFPLTVDVEERMYAAGR 92
Query: 66 LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125
+P S R GR + R+I R LR Q+++ +
Sbjct: 93 IPGSFFRR------EGRPSTDAILTCRLIDRPLRPSFVDGLRNEVQVVVTVLSLDPKDLY 146
Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185
AI A + +++ + + G +P V+ G +
Sbjct: 147 DVVAINAASASTQIAGLPFSGPVGGVRVALIPDQGANSAGGGQWVAFPTVEQLEGAVFDM 206
Query: 186 DVDANFVMTDSGHIVEVQGSAERATF----------SQDHFFAMLNLAKDRIADLIKLQK 235
V V + I+ V+ A ++ L AK IA L + Q+
Sbjct: 207 VVAGRVVESGDVAIMMVEAEATEKVIELVEGGAQAPTEAVVAEGLEAAKPFIARLCRAQQ 266
Query: 236 DVISN 240
D ++
Sbjct: 267 D-LAE 270
>gi|327542216|gb|EGF28707.1| ribonuclease PH [Rhodopirellula baltica WH47]
Length = 246
Score = 143 bits (359), Expect = 3e-32, Method: Composition-based stats.
Identities = 103/237 (43%), Positives = 142/237 (59%), Gaps = 4/237 (1%)
Query: 6 RQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGM 65
R +Q+R + + + S L K G T +L TA++E VP W+ GW+TAEY M
Sbjct: 9 RPHDQIRPVEIECGYLESNPASVLYKSGKTIVLCTASVETNVPPWMEGRGKGWVTAEYNM 68
Query: 66 LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125
LP ST R +R+ SG+ GR+ EIQR+IGR+LR+++DL ALG R I +DCDV+QADGGT
Sbjct: 69 LPGSTSPRKRRDR-SGKVDGRTTEIQRLIGRSLRAIIDLHALGERSITVDCDVLQADGGT 127
Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVL---KGHVAAISCGMLCGYPIVDLDYGED 182
RTA+ITG ++AL + + + VAAIS G++ ++DLDY D
Sbjct: 128 RTASITGGYIALSLAVSQLASIPELAPPIDPTAVLRDSVAAISVGVIGEDVVLDLDYRLD 187
Query: 183 STIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
S DVD N +MT SG +E+QG+ E ATF +L L K IA+L KLQK ++
Sbjct: 188 SAADVDMNVIMTGSGRFIELQGTGEEATFDDVQLAELLRLGKIGIAELTKLQKAQLA 244
>gi|304383335|ref|ZP_07365801.1| polyribonucleotide nucleotidyltransferase [Prevotella marshii DSM
16973]
gi|304335503|gb|EFM01767.1| polyribonucleotide nucleotidyltransferase [Prevotella marshii DSM
16973]
Length = 780
Score = 143 bits (359), Expect = 3e-32, Method: Composition-based stats.
Identities = 46/243 (18%), Positives = 86/243 (35%), Gaps = 18/243 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHG 57
RL GR+ +++R I GS + G+T LTT T L+EK+ + + +
Sbjct: 325 RLDGRRTDEIRPIWCEVSPLPMPHGSAIFTRGETQSLTTCTLGTKLDEKMIDDVLDKSYQ 384
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P TG + +V R+ G R L+ + + +
Sbjct: 385 RFILHYNFPPFCTGEARPQRSVGRREIGHGHL----AWRGLKGQIPADY--PYTVRLVSQ 438
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+++++G + A + +AL D M+ + + + G + D+
Sbjct: 439 ILESNGSSSMATVCAGTLALMDAGVPMKKPVSGIAMGLIKN-------PGEDKYAVLSDI 491
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T G + Q + S + L AK ++ +
Sbjct: 492 LGDEDHLGDMDFKTTGTKDG-LTATQMDIKCDGLSFEILEEALMQAKAGREHILGKITET 550
Query: 238 ISN 240
I+
Sbjct: 551 IAE 553
Score = 103 bits (256), Expect = 2e-20, Method: Composition-based stats.
Identities = 37/241 (15%), Positives = 73/241 (30%), Gaps = 26/241 (10%)
Query: 3 LSGRQENQMREISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
GR IS+ ++K +GS +V+ G+T LL T +
Sbjct: 11 PDGRS------ISVETGRLAKQTDGSVVVRMGNTVLLATVCAAKDAVPGTDFMPLQVDYR 64
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
E G+ R++ R LR + +
Sbjct: 65 EQYAAAGRFP--GGFTKREGKPSDNEILTSRLVDRVLRPLFPSNYHAEVF---------- 112
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
++ + D L + H++ + + G +V+ +
Sbjct: 113 ---VNVMLLSADGIDQPDALAGFAASAAMACSDIPFDFHISEVRVARVNGKYVVNPTSEQ 169
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
D+D T +I+ V+ E S+ L +A I + +Q++ +S E
Sbjct: 170 MKEADMDIMVGATKD-NIMMVE--GEMKEVSEQDLIEALKVAHQAIIPMCDVQEE-LSKE 225
Query: 242 V 242
+
Sbjct: 226 L 226
>gi|300871237|ref|YP_003786110.1| polynucleotide phosphorylase/polyadenylase [Brachyspira pilosicoli
95/1000]
gi|300688938|gb|ADK31609.1| polynucleotide phosphorylase/polyadenylase [Brachyspira pilosicoli
95/1000]
Length = 712
Score = 143 bits (359), Expect = 3e-32, Method: Composition-based stats.
Identities = 43/240 (17%), Positives = 79/240 (32%), Gaps = 10/240 (4%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR GR +++R IS + GS L G T L+ TL + + + +G
Sbjct: 312 MRPDGRALDEIRPISTMTNLIPRVHGSALFTRGQTQCLSIVTLGSEKDAQLMDDIYGKEN 371
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
+ + V G G R + R+ +V+ I + ++++
Sbjct: 372 KTFMLHYNFPPFSVGEVGRYGSPGRREIGHGNLAERSFNAVLPPKDKFPYTIRVVAEILE 431
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
++G + A I + ++L + + + + D+
Sbjct: 432 SNGSSSMATICASTMSLLSAGVPLNASVAGIAMGL---------ATYKDGYKVLTDIQGV 482
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
ED D+D T G I Q + S L AK ++ + ISN
Sbjct: 483 EDHLGDMDFKVAGTRKG-ITAFQLDIKLTGISTQILKEALEQAKKARYFILDKIEATISN 541
Score = 106 bits (264), Expect = 3e-21, Method: Composition-based stats.
Identities = 43/229 (18%), Positives = 79/229 (34%), Gaps = 27/229 (11%)
Query: 13 EISLTRRV-SKYAEGSCLVKFGDTHLLTTATLEEKV----PMWIRNTKHGWITAEYGMLP 67
E+ L + +K A GS ++ G+T +L T ++ + + G +P
Sbjct: 12 ELILETGLLAKQAHGSVTLRLGNTTILATVVAAKEPNLESDFFPLTVNYNEKYYAGGKIP 71
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R + + I R+I R LR + QII + D T
Sbjct: 72 GGFFKR------EAKPRDKEILISRIIDRPLRPLFPEGFRNEVQIIPTVLSVDTDMPTDA 125
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
L + + G VAA+ G G I++ E ++ ++
Sbjct: 126 -------------LALIASSAALTISWIPFGGPVAAVRIGYKNGEYIINPKNSELASSEL 172
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
D + I+ ++G A S++ F + LA + I +Q +
Sbjct: 173 DIIVAGSKD-AILMIEGEARE--VSEEVFIGAIELAHKEMQKYIDMQNE 218
>gi|46578918|ref|YP_009726.1| polynucleotide phosphorylase/polyadenylase [Desulfovibrio vulgaris
str. Hildenborough]
gi|120603481|ref|YP_967881.1| polynucleotide phosphorylase/polyadenylase [Desulfovibrio vulgaris
DP4]
gi|81567122|sp|Q72ER6|PNP_DESVH RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|187610296|sp|A1VG88|PNP_DESVV RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|46448330|gb|AAS94985.1| polyribonucleotide nucleotidyltransferase [Desulfovibrio vulgaris
str. Hildenborough]
gi|120563710|gb|ABM29454.1| Polyribonucleotide nucleotidyltransferase [Desulfovibrio vulgaris
DP4]
gi|311232776|gb|ADP85630.1| polyribonucleotide nucleotidyltransferase [Desulfovibrio vulgaris
RCH1]
Length = 760
Score = 142 bits (358), Expect = 3e-32, Method: Composition-based stats.
Identities = 45/242 (18%), Positives = 82/242 (33%), Gaps = 19/242 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +R I + + A GS L G+T L ATL +E+ +
Sbjct: 322 RIDGRDTTTVRPILIEAGILPRAHGSALFARGETKSLVVATLGSSTDEQRMDSLTGDVTK 381
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P G R R + +ALR ++ L + + +
Sbjct: 382 RFMLHYNFAPYCVGEVKP-----VRVSRREIGHGALAEKALRPILPLGEDFPFTLRVVAE 436
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
++++G + AA+ G ++L D + + + +G + +
Sbjct: 437 TMESNGSSSMAAVCGGCLSLMDAGVPITAPVAGVAMGLIKEGDQYVVLTD---------I 487
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED+ D+D T G I VQ + D + A+D ++ V
Sbjct: 488 LGDEDALGDMDFKIAGTSEG-ITAVQMDIKVKGLPTDVMARAMQQARDARLHILGEMGKV 546
Query: 238 IS 239
+
Sbjct: 547 LE 548
Score = 94.1 bits (232), Expect = 1e-17, Method: Composition-based stats.
Identities = 42/228 (18%), Positives = 76/228 (33%), Gaps = 25/228 (10%)
Query: 13 EISLTRR-VSKYAEGSCLVKFGDTHLLTTAT---LEEKVPMWIRNTKHGWITAEYGMLPR 68
EI ++ A+G+ ++ G T +L TA + + + ++ G +P
Sbjct: 18 EIVFETGRLANQADGAVWIQCGGTVVLVTACSQATDRDLGFFPLTVEYSEKMYAAGRIPG 77
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
S R GR R + R+I R +R + Q++ + + +
Sbjct: 78 SFFRR-----EIGRPSERETLVSRLIDRPIRPLFPKGLKDEVQVLANVISSDQNNDSDVL 132
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+TGA A S G VA G + G +++ E D++
Sbjct: 133 AVTGASTA-------------LGLSSIPFDGPVAGARIGRIDGQFVINPTIKEMERSDLN 179
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ +V V+ E + + L I LI Q
Sbjct: 180 IVLAASRD-AVVMVE--GEASFVPEAVIVEALEWGHKEIQPLIDAQLK 224
>gi|223933942|ref|ZP_03625902.1| Polyribonucleotide nucleotidyltransferase [Streptococcus suis
89/1591]
gi|302024508|ref|ZP_07249719.1| polynucleotide phosphorylase/polyadenylase [Streptococcus suis
05HAS68]
gi|330833543|ref|YP_004402368.1| polyribonucleotide nucleotidyltransferase [Streptococcus suis ST3]
gi|223897389|gb|EEF63790.1| Polyribonucleotide nucleotidyltransferase [Streptococcus suis
89/1591]
gi|329307766|gb|AEB82182.1| Polyribonucleotide nucleotidyltransferase [Streptococcus suis ST3]
Length = 739
Score = 142 bits (358), Expect = 3e-32, Method: Composition-based stats.
Identities = 43/244 (17%), Positives = 82/244 (33%), Gaps = 18/244 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56
+R GR+ +++R + GS L G T L+ T E ++ + +
Sbjct: 317 VRPDGRRVDEIRPLDAEVDFLPNVHGSGLFTRGQTQALSVLTLAPMGETQIIDGLGDEYK 376
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y S G+ + A R+ G RAL V+ I +
Sbjct: 377 KRFLHHYNFPQYSVGSTGRYGAPGRREIGHGALG----ERALEQVLPSLEDFPYAIRLVA 432
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V++++G + A+IT +AL ++ + + + D
Sbjct: 433 EVLESNGSSSQASITAGTLALMAGGVPIKAPVAGIAMGLISD---------GTNYTVLTD 483
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T G I +Q + + L AK +++ + +
Sbjct: 484 IQGLEDHFGDMDFKVAGTRDG-ITALQMDIKIDGITPQILEEALAQAKKARFEILDVIEA 542
Query: 237 VISN 240
I
Sbjct: 543 TIPE 546
Score = 108 bits (269), Expect = 8e-22, Method: Composition-based stats.
Identities = 43/231 (18%), Positives = 82/231 (35%), Gaps = 26/231 (11%)
Query: 13 EISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKV---PMWIRNTKHGWITAEYGMLPR 68
++ + V+K A G+ +V++GD+ +LT A + +K+ + + G P
Sbjct: 14 KLVVETGQVAKQANGAVVVRYGDSTVLTAAVMSKKMATGDFFPLQVNYEEKMYAAGKFPG 73
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
R GR + R+I R +R + Q+I D A
Sbjct: 74 GWMKR------EGRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDPDASAPMA 127
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+ G+ +A G +A + G + G I++ D + +D
Sbjct: 128 AMFGSSLA-------------LAISDIPFNGPIAGVQVGYVNGELIINPDKAQMEESLLD 174
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
I V+ A+ S+D L + I +L+ Q +++
Sbjct: 175 LTVAGNKD-AINMVESGAKE--LSEDIMLEALLKGHEAIQELLDFQNQIVA 222
>gi|270308241|ref|YP_003330299.1| polyribonucleotide nucleotidyltransferase (polynucleotide
phosphorylase) [Dehalococcoides sp. VS]
gi|270154133|gb|ACZ61971.1| polyribonucleotide nucleotidyltransferase (polynucleotide
phosphorylase) [Dehalococcoides sp. VS]
Length = 720
Score = 142 bits (358), Expect = 3e-32, Method: Composition-based stats.
Identities = 46/244 (18%), Positives = 89/244 (36%), Gaps = 17/244 (6%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
+R++GR Q+R++ + GS L GDT ++ TL E + +
Sbjct: 311 IRVNGRGIKQLRQLDAETGILPRVHGSALFTRGDTQVMAVTTLGSLQESQQLDGLSAEDT 370
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P STG + + R+ G RAL V+ I +
Sbjct: 371 KRFMLHYNFAPFSTGEVKRSGSPGRREIGHGAL----AERALVPVLPTPEEFPYTIRMVA 426
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
DV+ + G T ++ + ++L D ++ + + + I D
Sbjct: 427 DVVGSSGSTSMGSVCSSSLSLMDAGVPVKKAVAGISIGLI--------TGENDTYCTITD 478
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
++ ED+ D+D T G I +Q + S D + AK+ +++++
Sbjct: 479 IEGIEDNYGDMDFKVAGTRDG-ITAIQVDMKVKGISFDVIRDAIYQAKEARYNILEVMDK 537
Query: 237 VISN 240
++
Sbjct: 538 ALAQ 541
Score = 94.9 bits (234), Expect = 8e-18, Method: Composition-based stats.
Identities = 38/231 (16%), Positives = 77/231 (33%), Gaps = 27/231 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKHGWITAEYGML 66
R++ + +++ A+ + +++ DT LL T E V + G +
Sbjct: 14 RKLIIESGKIARLADAAVTIRYADTELLVTLCAAKKPREGVDFLPLTIDYEERMYAAGKI 73
Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
P R GR ++ R+ R LR ++ QIII +
Sbjct: 74 PGGFIRR------EGRPSEQAILAGRLTDRPLRPLLPKEWRNELQIIITVIASDKENDAD 127
Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
+ G + +G V A G + G +++ + +
Sbjct: 128 IWGVVG-------------ASTVLTMSQIPYEGPVGASRVGYINGEFVLNPTFAQLEQSQ 174
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
+D V T +V ++ ++ +D + A +LI LQ ++
Sbjct: 175 MDLVVVSTRK-AVVMIEAGSKE--IPEDLMIKAIEFAHQANQELIDLQDEI 222
>gi|15602979|ref|NP_246051.1| polynucleotide phosphorylase/polyadenylase [Pasteurella multocida
subsp. multocida str. Pm70]
gi|81636811|sp|Q9CLU1|PNP_PASMU RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|12721458|gb|AAK03198.1| Pnp [Pasteurella multocida subsp. multocida str. Pm70]
Length = 714
Score = 142 bits (358), Expect = 3e-32, Method: Composition-based stats.
Identities = 42/241 (17%), Positives = 88/241 (36%), Gaps = 18/241 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR + +R + + V GS + G+T L ATL + ++ + +
Sbjct: 317 RIDGRTVDTVRALDICTGVLPRTHGSAIFTRGETQALAVATLGTERDAQIIDELTGERSD 376
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + R+ G + R + +V+ A + + +
Sbjct: 377 HFLFHYNFPPYSVGETGMIGSPKRREIGHGRL----AKRGVAAVMPTLAEFPYVVRVVSE 432
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ GA +AL D ++ + V + + +
Sbjct: 433 ITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEDEKFVVLSD---------I 483
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T +G + +Q + + + LN AK ++ + +
Sbjct: 484 LGDEDHLGDMDFKVAGTRTG-VTALQMDIKIEGITAEIMQIALNQAKSARLHILGVMEQA 542
Query: 238 I 238
I
Sbjct: 543 I 543
Score = 91.4 bits (225), Expect = 1e-16, Method: Composition-based stats.
Identities = 34/232 (14%), Positives = 70/232 (30%), Gaps = 27/232 (11%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----HGWITAEYGMLPR 68
++L +++ A + + DT + T ++ V + T G +P
Sbjct: 15 VTLETGAIARQATAAVMASMDDTTVFVTVVAKKDVKEGQDFFPLTVNYQERTYAAGRIPG 74
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
R GR I R+I R +R + QI+ +
Sbjct: 75 GFFKR------EGRPSEGETLIARLIDRPIRPLFPEGFYNEIQIVATVVSVNPQICPDLV 128
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+ GA A G + A G + +++ E +D
Sbjct: 129 AMIGASAA-------------LSLSGVPFNGPIGAARVGFIDDQFVLNPTMNEQKQSRLD 175
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
T ++ V+ +E +++ A + + +I K+ +
Sbjct: 176 LVVAGT-DKAVLMVE--SEADVLTEEQMLAAVVFGHQQQQVVIDAIKEFTAE 224
>gi|168698769|ref|ZP_02731046.1| polynucleotide phosphorylase/polyadenylase [Gemmata obscuriglobus
UQM 2246]
Length = 749
Score = 142 bits (358), Expect = 3e-32, Method: Composition-based stats.
Identities = 45/242 (18%), Positives = 92/242 (38%), Gaps = 18/242 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR ++R + V G+ L + G+T L ATL +E+ +++
Sbjct: 317 RIDGRAPKELRALGAEVTVLPRTHGTALFQRGETQALVVATLGTVADEQKVDGLQDEYSK 376
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
+Y P S G A R+ G R+L++V+ + I + +
Sbjct: 377 KFFLDYNFPPYSVGECKPIRAPGRREIGHGML----AERSLKAVIPPPSRFPYTIRLVSE 432
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+++++G + A++ G +AL D ++ + V++ ++ +
Sbjct: 433 ILESNGSSSMASVCGGTLALMDAGVPIKRPVAGISVGLVMEKDHFSLLTD---------I 483
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T G + VQ + ++ L AK+ ++K
Sbjct: 484 QGDEDHYGDMDFKVAGTQKG-VTGVQLDIKVDGINEAIVRGALEQAKEARLQILKTMLSA 542
Query: 238 IS 239
+S
Sbjct: 543 LS 544
Score = 101 bits (251), Expect = 8e-20, Method: Composition-based stats.
Identities = 41/228 (17%), Positives = 70/228 (30%), Gaps = 26/228 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVP---MWIRNTKHGWITAEYGMLP 67
R + L +K A G+ LV +G+T +L A +P + ++ T G P
Sbjct: 15 RTLVLETGKFAKQAHGAVLVTYGETSVLVAAVEGSPIPGRDFFPLQVEYRERTYAAGKFP 74
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R R + R+I R R + + QI +
Sbjct: 75 GGFIKR------ETRPSTKETLTSRLIDRPSRPLFPANYFNEVQIHCTVISSDRENDADM 128
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
A+ G ALH + G + G +V + D+
Sbjct: 129 LALIGTSAALH-------------VSHIPFLKPYGGLRLGRVNGELVVLPTVTQMEESDL 175
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
D T + ++G A ++ + A + A LI L +
Sbjct: 176 DLIVAATRD-AVCMIEGFARE--MPENEMGDAIMEAHKQCAVLIDLIE 220
>gi|227549063|ref|ZP_03979112.1| polynucleotide phosphorylase/polyadenylase [Corynebacterium
lipophiloflavum DSM 44291]
gi|227078845|gb|EEI16808.1| polynucleotide phosphorylase/polyadenylase [Corynebacterium
lipophiloflavum DSM 44291]
Length = 776
Score = 142 bits (358), Expect = 3e-32, Method: Composition-based stats.
Identities = 44/242 (18%), Positives = 88/242 (36%), Gaps = 14/242 (5%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKH 56
R+ GR + +R++ + + A GS L + G+T +L TL+ E+ ++
Sbjct: 390 FRIDGRGVSDIRDLEVEVELIPRAHGSALFERGETQILGVTTLDMLKMEQTLDSLQPETA 449
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P STG + + R+ G RAL V+ I
Sbjct: 450 KRYIHHYNFPPYSTGETGRVGSPKRREIGHGAL----AERALIPVIPPREEFPYTIRQVS 505
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+ + ++G T ++ + ++L++ + + V + G + D
Sbjct: 506 EALGSNGSTSMGSVCASTLSLYNAGVPLAAPVAGIAMGLV-----SGEVDGATKYVALTD 560
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED+ D+D T I +Q + + + L A+D ++ +
Sbjct: 561 ILGAEDAFGDMDFKVSGTPDF-ITALQLDTKLDGIPSEVLVSALEQARDAREAILDTMAE 619
Query: 237 VI 238
VI
Sbjct: 620 VI 621
Score = 78.7 bits (192), Expect = 6e-13, Method: Composition-based stats.
Identities = 40/249 (16%), Positives = 73/249 (29%), Gaps = 33/249 (13%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGD-THLLTTATLE----EKVPMWIRNTKHGWITAEYGM 65
R I +++ A GS + T LL T T + + + G
Sbjct: 57 RTIRFETGQLARQAGGSVTTYLDEDTMLLATTTASKNPRDNIDFFPLTVDVEERMYAAGK 116
Query: 66 LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125
+P S R GR + R+I R LR Q++I + D
Sbjct: 117 IPGSFFRR------EGRPSTEAILACRLIDRPLRPTFVKGLRNEVQVVITVLSMNPDEYY 170
Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185
AI GA A + +++ + G + ++ +
Sbjct: 171 DVVAINGASAATQLSGLPVSGAVGAVRMALLTDDQH-------PEGQWVAFPNHEQHDHC 223
Query: 186 DVDANFVMT---DSGHIVEVQGSAERATF----------SQDHFFAMLNLAKDRIADLIK 232
+ I+ V+ A + +++ L+ AK I L +
Sbjct: 224 VFEMVVAGRVVDGDVAIMMVEAGAGASVVKLVADGAPAPTEETVAEGLDAAKPFIKTLCE 283
Query: 233 LQKDVISNE 241
Q ++ E
Sbjct: 284 TQ-AALAEE 291
>gi|15616978|ref|NP_240191.1| polynucleotide phosphorylase/polyadenylase [Buchnera aphidicola
str. APS (Acyrthosiphon pisum)]
gi|219681731|ref|YP_002468117.1| polyribonucleotide nucleotidyltransferase [Buchnera aphidicola str.
5A (Acyrthosiphon pisum)]
gi|219682286|ref|YP_002468670.1| polyribonucleotide nucleotidyltransferase [Buchnera aphidicola str.
Tuc7 (Acyrthosiphon pisum)]
gi|257471431|ref|ZP_05635430.1| polynucleotide phosphorylase/polyadenylase [Buchnera aphidicola
str. LSR1 (Acyrthosiphon pisum)]
gi|11386962|sp|P57454|PNP_BUCAI RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|254782710|sp|B8D9F8|PNP_BUCA5 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|254782711|sp|B8D7R0|PNP_BUCAT RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|25311798|pir||E84973 polyribonucleotide nucleotidyltransferase (EC 2.7.7.8) [imported] -
Buchnera sp. (strain APS)
gi|10039043|dbj|BAB13077.1| polyribonucleotide nucleotidyltransferase [Buchnera aphidicola str.
APS (Acyrthosiphon pisum)]
gi|219622019|gb|ACL30175.1| polyribonucleotide nucleotidyltransferase [Buchnera aphidicola str.
Tuc7 (Acyrthosiphon pisum)]
gi|219624574|gb|ACL30729.1| polyribonucleotide nucleotidyltransferase [Buchnera aphidicola str.
5A (Acyrthosiphon pisum)]
gi|311086110|gb|ADP66192.1| polynucleotide phosphorylase/polyadenylase [Buchnera aphidicola
str. LL01 (Acyrthosiphon pisum)]
gi|311086683|gb|ADP66764.1| polynucleotide phosphorylase/polyadenylase [Buchnera aphidicola
str. TLW03 (Acyrthosiphon pisum)]
gi|311087269|gb|ADP67349.1| polynucleotide phosphorylase/polyadenylase [Buchnera aphidicola
str. JF99 (Acyrthosiphon pisum)]
Length = 707
Score = 142 bits (358), Expect = 3e-32, Method: Composition-based stats.
Identities = 42/243 (17%), Positives = 89/243 (36%), Gaps = 18/243 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVP----MWIRNTKHG 57
R+ GR+++ +R + + + GS L G+T L + TL + +
Sbjct: 315 RIDGREKDMIRALDVRTGILPRTHGSALFTRGETQSLVSVTLGTSRDAQNLDELLGDRID 374
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + R+ G + R+L +V+ I + +
Sbjct: 375 NFLFHYNFPPYSVGEIGMVGSPKRREIGHGRL----AKRSLLAVMPTLENFPYTIRVVSE 430
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ GA +AL D ++ + V + + D+
Sbjct: 431 ITESNGSSSMASVCGASLALMDAGVPIKSAVAGISMGLVKE---------GNQHVLLSDI 481
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T+ G I +Q + + + + LN A+ ++ +
Sbjct: 482 LGDEDHLGDMDFKVAGTEEG-ITALQMDMKIEGITNEIIHSALNEARLARLHILNVMNQA 540
Query: 238 ISN 240
++
Sbjct: 541 LNE 543
Score = 91.1 bits (224), Expect = 1e-16, Method: Composition-based stats.
Identities = 40/233 (17%), Positives = 74/233 (31%), Gaps = 28/233 (12%)
Query: 14 ISLTRRV-SKYAEGSCLVKFGDTHLLTTATLEEKV----PMWIRNTKHGWITAEYGMLPR 68
I+L V ++ A + + +T + T ++K+ + + T G +P
Sbjct: 16 ITLETGVIARQANAAVMASMDETAVFVTVVGQKKIHTGQKFFPLTVNYQERTYAAGRIPG 75
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
R GR R+I R LR + L QII +
Sbjct: 76 GFFRR------EGRPSENEILTARLIDRPLRPLFPKKFLNEIQIIATVVSVNPQINPDII 129
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
+I GA A G V A G + I++ + +D
Sbjct: 130 SIIGASAA-------------LSLSGIPFYGPVGAARVGYINNQYILNPISDDMKNSSLD 176
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
T + I+ V+ ++ S++ + + +I + +SNE
Sbjct: 177 LVVSGTQN-AILMVEAESKI--LSEEKILGAIIFGHQQQQVVINNIR-SLSNE 225
>gi|296125683|ref|YP_003632935.1| polyribonucleotide nucleotidyltransferase [Brachyspira murdochii
DSM 12563]
gi|296017499|gb|ADG70736.1| polyribonucleotide nucleotidyltransferase [Brachyspira murdochii
DSM 12563]
Length = 716
Score = 142 bits (358), Expect = 3e-32, Method: Composition-based stats.
Identities = 42/240 (17%), Positives = 79/240 (32%), Gaps = 10/240 (4%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR GR +++R IS + GS L G T L+ TL + + + +G
Sbjct: 312 MRPDGRALDEIRPISTMINLIPRVHGSALFTRGQTQCLSIVTLGSEKDAQLMDDIYGKEN 371
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
+ + V G G R + R+ +V+ + + ++++
Sbjct: 372 KTFMLHYNFPPFSVGEVGRYGAPGRREIGHGNLAERSFNAVLPSKEKFPYTVRVVAEILE 431
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
++G + A I + ++L + + + + D+
Sbjct: 432 SNGSSSMATICASTMSLLSAGVPLNASVAGIAMGL---------ATYKDGYKILTDIQGV 482
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
ED D+D T G I Q + S L AK ++ + ISN
Sbjct: 483 EDHLGDMDFKVAGTRKG-ITAFQLDIKLTGISAQILKEALEQAKKARYFILDIIDSTISN 541
Score = 108 bits (268), Expect = 1e-21, Method: Composition-based stats.
Identities = 43/229 (18%), Positives = 79/229 (34%), Gaps = 27/229 (11%)
Query: 13 EISLTRRV-SKYAEGSCLVKFGDTHLLTTATLEEKV----PMWIRNTKHGWITAEYGMLP 67
E+ L + +K A GS ++ G+T +L T ++ + + G +P
Sbjct: 12 ELILETGLLAKQAHGSVTLRLGNTTILATVVAAKEPNLESDFFPLTVNYNEKYYAGGKIP 71
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R + + I R+I R LR + QII + D T
Sbjct: 72 GGFFKR------EAKPRDKEILISRIIDRPLRPLFPEGFRNEVQIIPTVLSVDTDMPTDA 125
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
L + + G VAA+ G G I++ E + ++
Sbjct: 126 -------------LALIASSAALTISWIPFGGPVAAVRIGYKNGEYIINPKNSELPSSEL 172
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
D + I+ ++G A+ S++ F + LA + I +Q +
Sbjct: 173 DIIVAGSKD-AILMIEGEAKE--VSEEVFIGAIELAHKEMQKYIDMQNE 218
>gi|206972738|ref|ZP_03233672.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus AH1134]
gi|206732338|gb|EDZ49526.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus AH1134]
Length = 712
Score = 142 bits (358), Expect = 3e-32, Method: Composition-based stats.
Identities = 44/244 (18%), Positives = 84/244 (34%), Gaps = 18/244 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56
+R GR+ +++R ++ + GS L G T L+ T + ++ + +
Sbjct: 315 IRPDGRKGDEIRPLASEVGILSRTHGSGLFTRGQTQALSICTLGALGDVQILDGLGVEES 374
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y S G R+ G RAL V+ + +
Sbjct: 375 KRFMHHYNFPSFSVGETRPMRGQGRREIGHGALG----ERALEPVIPSEKDFPYTVRLVS 430
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V++++G T A+I G+ +A+ D ++ + V G + D
Sbjct: 431 EVLESNGSTSQASICGSTLAMMDAGVPLKAPVAGIAMGLVKTGE---------HYTILSD 481
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T G + +Q + S++ L AK ++
Sbjct: 482 IQGMEDHLGDMDFKVAGTAQG-VTALQMDIKIDGLSREILEEALQQAKVGRVHILNHMLS 540
Query: 237 VISN 240
VI
Sbjct: 541 VIPE 544
Score = 114 bits (284), Expect = 1e-23, Method: Composition-based stats.
Identities = 43/231 (18%), Positives = 90/231 (38%), Gaps = 26/231 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEK---VPMWIRNTKHGWITAEYGMLP 67
R++++ ++K A G+ LV++GDT +L+TAT ++ V + + G +P
Sbjct: 15 RQLTVETGQLAKQANGAVLVRYGDTAVLSTATASKEAKNVDFFPLTVNYEERLYAVGKIP 74
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R GR ++ R+I R +R + Q++ + D +
Sbjct: 75 GGFIKR------EGRPSEKAILASRLIDRPIRPLFADGFRNEVQVVSIVMSVDQDCSSEM 128
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
AA+ G+ +A +G +A + G + G +++ + D+
Sbjct: 129 AAMLGSSLA-------------LSISDIPFEGPIAGATVGRINGEFVINPTVEQQEQSDI 175
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
T I V+ A++ ++ + D I LI Q++++
Sbjct: 176 HLVVAGTKD-AINMVEAGADQVP--EETMLEAIMFGHDEIKRLIAFQEEIV 223
>gi|42632644|gb|AAS22253.1| polynucleotide phosphorylase [Aster yellows witches'-broom
phytoplasma]
Length = 716
Score = 142 bits (358), Expect = 3e-32, Method: Composition-based stats.
Identities = 43/244 (17%), Positives = 82/244 (33%), Gaps = 16/244 (6%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
+R R+ ++R + + A GS L G T L TL E K+ + + ++
Sbjct: 325 IRPDKRELEEIRTLESQIDLLPRAHGSALFTRGKTQSLAAVTLGCLSESKIIDGLSDEQN 384
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P S G + A S R+ G +A+ V+ I +
Sbjct: 385 KRFMLHYNFPPFSVGAVGRYTAPSRREIGHGTL----AEKAISQVLPEEKDFPYTIRVVS 440
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
++++++G + A + + +AL ++ + V + D
Sbjct: 441 EILESNGSSSQATVCSSSLALMASGVPLKKAVAGISVGLVFDQETN-------KYVILSD 493
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T+ G I +Q + AK +++
Sbjct: 494 IQGLEDHVGDMDLKIAGTNKG-ITALQMDLKIQGIPFKILQEAFLQAKKGRLHILEQMNQ 552
Query: 237 VISN 240
IS
Sbjct: 553 TISQ 556
Score = 68.7 bits (166), Expect = 7e-10, Method: Composition-based stats.
Identities = 35/230 (15%), Positives = 74/230 (32%), Gaps = 26/230 (11%)
Query: 16 LTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKV---PMWIRNTKHGWITAEYGMLPRSTG 71
+ ++ + S LV++ DT +LTT K + G +P S
Sbjct: 17 VEIGTYARNVDSSILVRYQDTVVLTTMVFSRKPNNLDFLPLTVIYQEKLYAAGKIPGSFL 76
Query: 72 NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAIT 131
+ + R+I R+LR + Q+I + D + A++
Sbjct: 77 TPRRGGSN-----DHEILTSRLIDRSLRPLFPDYFQQEVQVINTVLSLDPDFKSELASML 131
Query: 132 GAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANF 191
G+ ++L + + + G + I++ + + +
Sbjct: 132 GSSLSLLISEIPFFEAISG-------------VYVGKINNEFIINPTLQQLANSTLHLIV 178
Query: 192 VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
T ++ ++ A S+ F +N A I L Q + I +
Sbjct: 179 AGTKH-NVTMIEAHANE--VSEQDFLEAINFAHQYIKKLCLFQ-ENIKQQ 224
>gi|85057750|ref|YP_456666.1| polynucleotide phosphorylase/polyadenylase [Aster yellows
witches'-broom phytoplasma AYWB]
gi|123725338|sp|Q2NJ06|PNP_AYWBP RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|84789855|gb|ABC65587.1| polyribonucleotide nucleotidyltransferase [Aster yellows
witches'-broom phytoplasma AYWB]
Length = 715
Score = 142 bits (358), Expect = 3e-32, Method: Composition-based stats.
Identities = 43/244 (17%), Positives = 82/244 (33%), Gaps = 16/244 (6%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
+R R+ ++R + + A GS L G T L TL E K+ + + ++
Sbjct: 324 IRPDKRELEEIRTLESQIDLLPRAHGSALFTRGKTQSLAAVTLGCLSESKIIDGLSDEQN 383
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P S G + A S R+ G +A+ V+ I +
Sbjct: 384 KRFMLHYNFPPFSVGAVGRYTAPSRREIGHGTL----AEKAISQVLPEEKDFPYTIRVVS 439
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
++++++G + A + + +AL ++ + V + D
Sbjct: 440 EILESNGSSSQATVCSSSLALMASGVPLKKAVAGISVGLVFDQETN-------KYVILSD 492
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T+ G I +Q + AK +++
Sbjct: 493 IQGLEDHVGDMDLKIAGTNKG-ITALQMDLKIQGIPFKILQEAFLQAKKGRLHILEQMNQ 551
Query: 237 VISN 240
IS
Sbjct: 552 TISQ 555
Score = 73.0 bits (177), Expect = 4e-11, Method: Composition-based stats.
Identities = 38/230 (16%), Positives = 75/230 (32%), Gaps = 27/230 (11%)
Query: 16 LTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKV---PMWIRNTKHGWITAEYGMLPRSTG 71
+ ++ + S LV++ DT +LTT K + G +P S
Sbjct: 17 VEIGTYARNVDSSILVRYQDTVVLTTMVFSRKPNNLDFLPLTVIYQEKLYAAGKIPGSFL 76
Query: 72 NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAIT 131
R GR R+I R+LR + Q+I + D + A++
Sbjct: 77 RR------EGRSNDHEILTSRLIDRSLRPLFPDYFQQEVQVINTVLSLDPDFKSELASML 130
Query: 132 GAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANF 191
G+ ++L + + + G + I++ + + +
Sbjct: 131 GSSLSLLISEIPFFEAISG-------------VYVGKINNEFIINPTLQQLANSTLHLIV 177
Query: 192 VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
T ++ ++ A S+ F +N A I L Q + I +
Sbjct: 178 AGTKH-NVTMIEAHANE--VSEQDFLEAINFAHQYIKKLCLFQ-ENIKQQ 223
>gi|7716531|gb|AAF68421.1|AF237935_1 polynucleotide phosphorylase [Pasteurella multocida]
Length = 684
Score = 142 bits (358), Expect = 4e-32, Method: Composition-based stats.
Identities = 42/241 (17%), Positives = 88/241 (36%), Gaps = 18/241 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR + +R + + V GS + G+T L ATL + ++ + +
Sbjct: 287 RIDGRTVDTVRALDICTGVLPRTHGSAIFTRGETQALAVATLGTERDAQIIDELTGERSD 346
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + R+ G + R + +V+ A + + +
Sbjct: 347 HFLFHYNFPPYSVGETGMIGSPKRREIGHGRL----AKRGVAAVMPTLAEFPYVVRVVSE 402
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ GA +AL D ++ + V + + +
Sbjct: 403 ITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEDEKFVVLSD---------I 453
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T +G + +Q + + + LN AK ++ + +
Sbjct: 454 LGDEDHLGDMDFKVAGTRTG-VTALQMDIKIEGITAEIMQIALNQAKSARLHILGVMEQA 512
Query: 238 I 238
I
Sbjct: 513 I 513
Score = 76.8 bits (187), Expect = 2e-12, Method: Composition-based stats.
Identities = 32/216 (14%), Positives = 62/216 (28%), Gaps = 26/216 (12%)
Query: 29 LVKFGDTHLLTTATLEEKVPMWIRNTK----HGWITAEYGMLPRSTGNRVKREAVSGRQG 84
+ DT + T ++ V + T G +P R GR
Sbjct: 1 MASMDDTTVFVTVVAKKDVKEGQDFFPLTVNYQERTYAAGRIPGGFFKR------EGRPS 54
Query: 85 GRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHM 144
I R+I R +R + QI+ + A+ GA A
Sbjct: 55 EGETLIARLIDRPIRPLFPEGFYNEIQIVATVVSVNPQICPDLVAMIGASAA-------- 106
Query: 145 EDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQG 204
G + A G + +++ E +D T ++ V+
Sbjct: 107 -----LSLSGVPFNGPIGAARVGFIDDQFVLNPTMNEQKQSRLDLVVAGT-DKAVLMVE- 159
Query: 205 SAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
+E +++ A + + +I K+ +
Sbjct: 160 -SEADVLTEEQMLAAVVFGHQQQQVVIDAIKEFTAE 194
>gi|30021896|ref|NP_833527.1| polynucleotide phosphorylase/polyadenylase [Bacillus cereus ATCC
14579]
gi|81433861|sp|Q819Z1|PNP_BACCR RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|29897452|gb|AAP10728.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus ATCC
14579]
Length = 712
Score = 142 bits (358), Expect = 4e-32, Method: Composition-based stats.
Identities = 44/244 (18%), Positives = 85/244 (34%), Gaps = 18/244 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56
+R GR+ +++R ++ + GS L G T L+ T + ++ + +
Sbjct: 315 IRPDGRKGDEIRPLASEVGILSRTHGSGLFTRGQTQALSICTLGALGDVQILDGLGVEES 374
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y S G R+ G + RAL V+ + +
Sbjct: 375 KRFMHHYNFPSFSVGETRPMRGPGRREIG----HGAIGERALEPVIPSEKDFPYTVRLVS 430
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V++++G T A+I G+ +A+ D ++ + V G + D
Sbjct: 431 EVLESNGSTSQASICGSTLAMMDAGVPLKAPVAGIAMGLVKTGE---------HYTILSD 481
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T G + +Q + S++ L AK ++
Sbjct: 482 IQGMEDHLGDMDFKVAGTAQG-VTALQMDIKIDGLSREILEEALQQAKVGRVHILNHMLS 540
Query: 237 VISN 240
VI
Sbjct: 541 VIPE 544
Score = 113 bits (283), Expect = 2e-23, Method: Composition-based stats.
Identities = 43/231 (18%), Positives = 90/231 (38%), Gaps = 26/231 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEK---VPMWIRNTKHGWITAEYGMLP 67
R++++ ++K A G+ LV++GDT +L+TAT ++ V + + G +P
Sbjct: 15 RQLTVETGQLAKQANGAVLVRYGDTAVLSTATASKEAKNVDFFPLTVNYEERLYAVGKIP 74
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R GR ++ R+I R +R + Q++ + D +
Sbjct: 75 GGFIKR------EGRPSEKAILASRLIDRPIRPLFADGFRNEVQVVSIVMSVDQDCSSEM 128
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
AA+ G+ +A +G +A + G + G +++ + D+
Sbjct: 129 AAMLGSSLA-------------LSISDIPFEGPIAGATVGRINGEFVINPTVEQQEQSDI 175
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
T I V+ A++ ++ + D I LI Q++++
Sbjct: 176 HLVVAGTKD-AINMVEAGADQVP--EETMLEAIMFGHDEIKRLIAFQEEIV 223
>gi|325284098|ref|YP_004256639.1| Polyribonucleotide nucleotidyltransferase [Deinococcus
proteolyticus MRP]
gi|324315907|gb|ADY27022.1| Polyribonucleotide nucleotidyltransferase [Deinococcus
proteolyticus MRP]
Length = 810
Score = 142 bits (358), Expect = 4e-32, Method: Composition-based stats.
Identities = 47/242 (19%), Positives = 87/242 (35%), Gaps = 18/242 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+R GR +R I R A GS + G+T +L TL + + +
Sbjct: 318 LRADGRDTRTVRPIWTEVRPLPRAHGSAIFTRGETQVLGVTTLGTERDEILIDDLTEDTG 377
Query: 61 A----EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P STG + A S R+ G RAL +V+ I +
Sbjct: 378 DKFLLHYNFPPYSTGEVKRMGAQSRREVGHGNL----AKRALSAVLPPFEEFPYVIRVVG 433
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V++++G + A + ++L D ++ + V++G + D
Sbjct: 434 EVLESNGSSSMATVCSGALSLMDAGVPIKAPVAGVAMGLVMEGD---------RYRILTD 484
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED+ D+D T G + +Q + + L AK+ ++ +
Sbjct: 485 ILGLEDALGDMDFKVCGTAEG-VTALQMDIKIGGITPAIMREALAQAKEARLHILGKMAE 543
Query: 237 VI 238
V+
Sbjct: 544 VL 545
Score = 91.4 bits (225), Expect = 9e-17, Method: Composition-based stats.
Identities = 44/237 (18%), Positives = 78/237 (32%), Gaps = 29/237 (12%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEK---VPMWIRNTKHGWITAEYGMLP 67
RE+++ ++K GS +++GDT LL TA ++ + + G +P
Sbjct: 13 RELTIETGRLAKLVSGSVTLRYGDTLLLVTAQARQEKSTLDFLPLTVEFEEKHYAVGKIP 72
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
S R GR G R+ R+ R +R + Q+II
Sbjct: 73 GSFSRR------EGRPGERAILSARITDRQIRPLFPKGYRHETQVIITVLSADQQNAPDV 126
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
GA A G A + G + G +++ + D+
Sbjct: 127 LGPIGAAAA-------------LSISDIPWGGPTACVRVGRVDGQFVINPTAVQLERSDL 173
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAK---DRIADLIKLQKDVISNE 241
D T ++ V+ A+ +D + A + DLI + + E
Sbjct: 174 DLVVAGTRD-AVMMVEAGAQVVA--EDELVDAIEFAHAEMQGVLDLIDTMRAELGRE 227
>gi|332522644|ref|ZP_08398896.1| polyribonucleotide nucleotidyltransferase [Streptococcus porcinus
str. Jelinkova 176]
gi|332313908|gb|EGJ26893.1| polyribonucleotide nucleotidyltransferase [Streptococcus porcinus
str. Jelinkova 176]
Length = 742
Score = 142 bits (358), Expect = 4e-32, Method: Composition-based stats.
Identities = 42/243 (17%), Positives = 80/243 (32%), Gaps = 18/243 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56
+R GR+ +++R + GS L G T L+ T E ++ +
Sbjct: 328 IRPDGRKIDEIRPLDAQIDFLPKVHGSGLFTRGQTQALSVLTLAPMGETQIIDGLDEEYK 387
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y S G + A R+ G RAL V+ I +
Sbjct: 388 KRFMHHYNFPQYSVGETGRYGAAGRREIGHGALG----ERALAQVLPSLEEFPYAIRLVA 443
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V++++G + A+I +AL ++ + + + D
Sbjct: 444 EVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISD---------GTNYTVLTD 494
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T G I +Q + + L AK +++ + +
Sbjct: 495 IQGLEDHFGDMDFKVAGTREG-ITALQMDIKIEGITPQILEEALAQAKKARFEILDVIEA 553
Query: 237 VIS 239
I+
Sbjct: 554 TIA 556
Score = 101 bits (252), Expect = 7e-20, Method: Composition-based stats.
Identities = 41/231 (17%), Positives = 83/231 (35%), Gaps = 26/231 (11%)
Query: 13 EISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKV---PMWIRNTKHGWITAEYGMLPR 68
+ + V+K A G+ +V++G++ +LT A + +K+ + + G P
Sbjct: 25 PLVVEVGQVAKQANGATVVRYGESTVLTAAVMSKKMATGDFFPLQVNYEEKMYAAGKFPG 84
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
R GR + R+I R +R + Q+I + A
Sbjct: 85 GFMKR------EGRPSTDATLTARLIDRPIRPMFAEGFRNEIQVINTVLSYDENASAPMA 138
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+ G+ +A G +A + G + G I++ D + ++
Sbjct: 139 AMFGSSLA-------------LSISDIPFNGPIAGVQVGYIDGQFIINPDKAQMEASLLE 185
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
+ I V+ A+ S+D L I +LI Q+++++
Sbjct: 186 LTVAGSKE-AINMVESGAKE--LSEDIMLEALLKGHQAIQELITFQEEIVA 233
>gi|284053181|ref|ZP_06383391.1| polynucleotide phosphorylase/polyadenylase [Arthrospira platensis
str. Paraca]
gi|291569922|dbj|BAI92194.1| polyribonucleotide nucleotidyltransferase [Arthrospira platensis
NIES-39]
Length = 720
Score = 142 bits (358), Expect = 4e-32, Method: Composition-based stats.
Identities = 50/243 (20%), Positives = 88/243 (36%), Gaps = 19/243 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSK-YAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTK 55
+R+ GR +Q+R +S + GS L G T +L+ AT + + +
Sbjct: 323 VRVDGRNLDQVRPVSCRVGLLPKRVHGSGLFNRGLTQVLSIATLGTPGDAQDLDDLHPQD 382
Query: 56 HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115
Y P S G + R+ G RAL V+ I I
Sbjct: 383 EKRYMHHYNFPPYSVGETRPMRSPGRREIGHGAL----AERALLPVLPSKEQFPYVIRIV 438
Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIV 175
+V+ ++G T ++ G+ +AL D + + + + +G +
Sbjct: 439 SEVLSSNGSTSMGSVCGSTLALMDAGVPITKPVSGAAMGLIKEGSEV---------RILT 489
Query: 176 DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
D+ ED D+D TDSG I +Q + S D + AK +++
Sbjct: 490 DIQGIEDFLGDMDFKVAGTDSG-ITALQMDMKITGLSLDVVADAIAKAKPARLHILEKML 548
Query: 236 DVI 238
+V+
Sbjct: 549 EVL 551
Score = 95.7 bits (236), Expect = 5e-18, Method: Composition-based stats.
Identities = 50/235 (21%), Positives = 84/235 (35%), Gaps = 26/235 (11%)
Query: 10 QMREISLTRRV-SKYAEGSCLVKFGDTHLLTTAT---LEEKVPMWIRNTKHGWITAEYGM 65
R+I L + + A G+ LV+ GDT +L TAT + + G
Sbjct: 11 DGRDIRLKIGLLAPQAGGALLVESGDTSVLVTATRAEGRPGIDFLPLLVDYEERLYAGGR 70
Query: 66 LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125
+P R GR R R+I R LR ++ QI+ +
Sbjct: 71 IPGGFLRR------EGRPPDRVTLTSRLIDRPLRPLIPGWIRDDIQIVATTLSMDEQVPP 124
Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185
A+TGA VA+ +AA+ G++ I++ Y E
Sbjct: 125 DVLAVTGASVAVLLARIPFYG-------------PMAAVRVGLVGDDFIINPTYKEIRNG 171
Query: 186 DVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
D+D + G +V V+ A + ++ + + DLIK Q +++
Sbjct: 172 DLDLVVAGSPQG-VVMVEAGANE--LPEHDVIEAIDFGYEAVMDLIKAQTEIMQE 223
>gi|291302562|ref|YP_003513840.1| guanosine pentaphosphate synthetase I/polyribonucleotide
nucleotidyltransferase [Stackebrandtia nassauensis DSM
44728]
gi|290571782|gb|ADD44747.1| guanosine pentaphosphate synthetase I/polyribonucleotide
nucleotidyltransferase [Stackebrandtia nassauensis DSM
44728]
Length = 825
Score = 142 bits (358), Expect = 4e-32, Method: Composition-based stats.
Identities = 41/244 (16%), Positives = 84/244 (34%), Gaps = 14/244 (5%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
+R+ GR +R +S ++ GS L + G+T ++ TL E+ +
Sbjct: 349 VRIDGRGTRDIRPLSAEVKILPRVHGSALFERGETQIMGVTTLNMLRMEQAIDTLSPVSK 408
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P STG + + R+ G RA+ V+ I
Sbjct: 409 KRYMHNYNFPPYSTGETGRVGSPKRREIGHGAL----AERAIVPVLPSREEFPYAIRQVS 464
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+ + ++G T ++ + ++L ++ + + G I D
Sbjct: 465 EALGSNGSTSMGSVCASTMSLMAAGVPLKAPVAGIAMGLISDE-----VDGKTEYVTITD 519
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED+ D+D T + + +Q + D L+ A D ++ + +
Sbjct: 520 ILGAEDAFGDMDFKVAGTRNF-VTALQLDTKLDGIPSDVLAGALSQAYDARQAIMDVMAE 578
Query: 237 VISN 240
I+
Sbjct: 579 AIAE 582
Score = 90.7 bits (223), Expect = 2e-16, Method: Composition-based stats.
Identities = 45/244 (18%), Positives = 76/244 (31%), Gaps = 38/244 (15%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKHGWITAEYGML 66
REI+ + ++K A GS LV+ GDT +L+T E + G +
Sbjct: 32 REITFSTGRLAKQAAGSVLVQLGDTVVLSTTAAGKHPKEHFDFFPLTVDVEERMYAAGRI 91
Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
P S R GR + R+I R LR Q+I +
Sbjct: 92 PGSFFRR------EGRPSEDAILTCRLIDRGLRPSFIKGLRNEVQVIETVLALDEAHPYD 145
Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
A+ GA + +G + + + G + + T
Sbjct: 146 VVAMNGASAST-------------ALSGLPCQGPLGSTRVANINGEWVAFPTLEQLETAT 192
Query: 187 VDANFVM----TDSGHIVEVQGSAERATF----------SQDHFFAMLNLAKDRIADLIK 232
D I+ V+ A +++ A L AK I++L +
Sbjct: 193 FDMVVTGRVVEGGDVAIMMVEAEATDKAVELIGGGSVAPTEEVVAAGLEAAKPVISELCR 252
Query: 233 LQKD 236
Q++
Sbjct: 253 AQRE 256
>gi|323126485|gb|ADX23782.1| polynucleotide phosphorylase/polyadenylase [Streptococcus
dysgalactiae subsp. equisimilis ATCC 12394]
Length = 710
Score = 142 bits (358), Expect = 4e-32, Method: Composition-based stats.
Identities = 43/244 (17%), Positives = 82/244 (33%), Gaps = 18/244 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56
+R GR+ +++R + GS L G T L+ T E ++ +
Sbjct: 317 IRPDGRKIDEIRPLDAVVDFLPKVHGSGLFTRGQTQALSVLTLAPMGETQIIDGLAPEYK 376
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y S G + A R+ G RAL V+ I +
Sbjct: 377 KRFLHHYNFPQYSVGETGRYGAAGRREIGHGALG----ERALEQVLPSLEEFPYAIRLVA 432
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V++++G + A+I +AL ++ + + + D
Sbjct: 433 EVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISD---------GTNYTVLTD 483
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T G I +Q + A + L AK +++ + ++
Sbjct: 484 IQGLEDHFGDMDFKVAGTREG-ITALQMDIKIAGITPQILEEALAQAKKARFEILDVIEE 542
Query: 237 VISN 240
I+
Sbjct: 543 TIAE 546
Score = 103 bits (257), Expect = 2e-20, Method: Composition-based stats.
Identities = 41/231 (17%), Positives = 82/231 (35%), Gaps = 26/231 (11%)
Query: 13 EISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKV---PMWIRNTKHGWITAEYGMLPR 68
+ + V+K A G+ +V++G++ +LT A + +K+ + + G P
Sbjct: 14 PLVVEVGQVAKQANGATVVRYGESTVLTAAVMSKKMATGDFFPLQVNYEEKMYAAGKFPG 73
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
R GR + R+I R +R + Q+I + A
Sbjct: 74 GFMKR------EGRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDENASAPMA 127
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+ G+ +A G +A + G + G I++ D + ++
Sbjct: 128 AMFGSSLA-------------LSISDIPFNGPIAGVQVGYIDGEFIINPDKEQMEASLLE 174
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
+ I V+ A+ S+D L I +LI Q+ +++
Sbjct: 175 LTVAGSKE-AINMVESGAKE--LSEDIMLEALLKGHQAIQELIAFQEQIVA 222
>gi|296087634|emb|CBI34890.3| unnamed protein product [Vitis vinifera]
Length = 905
Score = 142 bits (358), Expect = 4e-32, Method: Composition-based stats.
Identities = 49/243 (20%), Positives = 87/243 (35%), Gaps = 11/243 (4%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56
+R+ GR N++R + GS L GDT +L T T + + +
Sbjct: 317 LRVDGRHLNEVRPLYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPGDAQRLDSLVGPPT 376
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P S KR ++ R+ G +AL +V+ + I+
Sbjct: 377 KRFMLHYSFPPFSINEVGKRVGLNRREVGHGTL----AEKALLAVLPPEEEFPYTVRINS 432
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V+ +DG T A + G +AL D + + + V + + + + + D
Sbjct: 433 EVMASDGSTSMATVCGGSMALMDAGIPLREHVAGISVGLVTEVDPS--TNTIKDYRILTD 490
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T G I +Q + A D L A ++ +
Sbjct: 491 ILGLEDHLGDMDFKIAGTRKG-ITAIQLDIKPAGIPLDIICECLEPALRGRLQILDRMEQ 549
Query: 237 VIS 239
I+
Sbjct: 550 EIN 552
Score = 88.4 bits (217), Expect = 9e-16, Method: Composition-based stats.
Identities = 38/227 (16%), Positives = 70/227 (30%), Gaps = 26/227 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTA---TLEEKVPMWIRNTKHGWITAEYGMLP 67
R I+ ++++A G+ ++ +T +L+T + + G++P
Sbjct: 16 RSITFETGKIARFANGAVVMSMDETKVLSTVASSKGDAARDFLPLTVDYQEKHFAQGVIP 75
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
+ R G R R+I R +R + Q++
Sbjct: 76 TTFMRR------EGAPRERELLCGRLIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPDV 129
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
A AL G + I G +CG IV+ E S D+
Sbjct: 130 MAANATSAALM-------------LSDIPWGGPIGVIRIGRICGQFIVNPSMDELSLSDL 176
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
+ + T + + A S+ A L LA ++ Q
Sbjct: 177 NLVYACTRDKTL-MIDVQARE--ISEKDLEAALRLAHPEAVRYLEPQ 220
>gi|33863644|ref|NP_895204.1| polynucleotide phosphorylase/polyadenylase [Prochlorococcus marinus
str. MIT 9313]
gi|81577177|sp|Q7V606|PNP_PROMM RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|33635227|emb|CAE21552.1| polyribonucleotide nucleotidyltransferase [Prochlorococcus marinus
str. MIT 9313]
Length = 723
Score = 142 bits (358), Expect = 4e-32, Method: Composition-based stats.
Identities = 45/242 (18%), Positives = 87/242 (35%), Gaps = 19/242 (7%)
Query: 2 RLSGRQENQMREISLTRRVSK-YAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
R+ GR+ +++R IS V GS L + G T +L+TATL + + +
Sbjct: 325 RVDGRKLDEVRPISSAAGVLPKRVHGSGLFQRGLTQVLSTATLGTPSDAQEMDDLNPGPE 384
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P S G + R+ G RA+ V+ + +
Sbjct: 385 KTYLHHYNFPPYSVGETRPMRSPGRREVGHGSL----AERAIIPVLPPKDSFPYVLRVVS 440
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V+ ++G T ++ G+ +AL D ++ + + + + + D
Sbjct: 441 EVLSSNGSTSMGSVCGSTLALMDAGVPLKAPVSGAAMGLIKEDAEI---------RILTD 491
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T G I +Q + +N A+ +++ +
Sbjct: 492 IQGIEDFLGDMDFKVAGTKDG-ITALQMDMKITGLPVKTIAEAVNQARPARIHILEKMLE 550
Query: 237 VI 238
I
Sbjct: 551 AI 552
Score = 106 bits (264), Expect = 3e-21, Method: Composition-based stats.
Identities = 55/235 (23%), Positives = 91/235 (38%), Gaps = 26/235 (11%)
Query: 10 QMREISLTRR-VSKYAEGSCLVKFGDTHLLTTA---TLEEKVPMWIRNTKHGWITAEYGM 65
REI LT + A GS +++ GDT +L TA T E + + G
Sbjct: 11 DGREIRLTTGRYAPQAGGSVMMECGDTAVLVTATRSTGREGIDFLPLICDYEERLYAAGR 70
Query: 66 LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125
+P S R GR R+ I R+I R +R + QI+ C +
Sbjct: 71 IPGSFMRR------EGRPPERATLIARLIDRPMRPLFPSWMRDDLQIVATCLSLDERVPA 124
Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185
A+TGA +A +G +AA+ G+L +++ Y E
Sbjct: 125 DVLAVTGASMATLLASI-------------PFQGPMAAVRVGLLGDDFVLNPSYREIERG 171
Query: 186 DVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
D+D T G +V V+ A + Q ++ + + +LIK Q+ ++ +
Sbjct: 172 DLDLVVAGTPDG-VVMVEAGANQ--LPQGDVIEAIDFGYEAVCELIKAQQTILKD 223
>gi|260913802|ref|ZP_05920277.1| polyribonucleotide nucleotidyltransferase [Pasteurella dagmatis
ATCC 43325]
gi|260632115|gb|EEX50291.1| polyribonucleotide nucleotidyltransferase [Pasteurella dagmatis
ATCC 43325]
Length = 666
Score = 142 bits (358), Expect = 4e-32, Method: Composition-based stats.
Identities = 42/241 (17%), Positives = 87/241 (36%), Gaps = 18/241 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR + +R + + V GS + G+T L ATL + ++ + +
Sbjct: 269 RIDGRTVDTVRALDICTGVLPRTHGSAIFTRGETQALAVATLGTERDAQIIDELTGERSD 328
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + R+ G + R + +V+ A + + +
Sbjct: 329 HFLFHYNFPPYSVGETGMIGSPKRREIGHGRL----AKRGVAAVMPTLAEFPYVVRVVSE 384
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ GA +AL D ++ + V + + +
Sbjct: 385 ITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEDEKFVVLSD---------I 435
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T G + +Q + + + LN AK ++ + +
Sbjct: 436 LGDEDHLGDMDFKVAGTRQG-VTALQMDIKIEGITAEIMQIALNQAKSARLHILGVMEQA 494
Query: 238 I 238
I
Sbjct: 495 I 495
Score = 67.6 bits (163), Expect = 1e-09, Method: Composition-based stats.
Identities = 29/192 (15%), Positives = 57/192 (29%), Gaps = 22/192 (11%)
Query: 45 EKVPMWIRNTKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDL 104
E + + T G +P R GR I R+I R +R +
Sbjct: 3 EGQDFFPLTVNYQERTYAAGRIPGGFFKR------EGRPSEGETLIARLIDRPIRPLFPE 56
Query: 105 SALGSRQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAI 164
QI+ + A+ GA A G + A
Sbjct: 57 GFYNEIQIVATVVSVNPQICPDLVAMIGASAA-------------LSLSGVPFNGPIGAA 103
Query: 165 SCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAK 224
G + +++ E +D T ++ V+ +E +++ A +
Sbjct: 104 RVGFIDNQFVLNPTMNEQKQSRLDLVVAGT-DKAVLMVE--SEADVLTEEQMLAAVVFGH 160
Query: 225 DRIADLIKLQKD 236
++ +I+ K+
Sbjct: 161 EQQQVVIEAIKE 172
>gi|149177150|ref|ZP_01855757.1| polynucleotide phosphorylase/polyadenylase [Planctomyces maris DSM
8797]
gi|148844042|gb|EDL58398.1| polynucleotide phosphorylase/polyadenylase [Planctomyces maris DSM
8797]
Length = 711
Score = 142 bits (358), Expect = 4e-32, Method: Composition-based stats.
Identities = 43/239 (17%), Positives = 81/239 (33%), Gaps = 10/239 (4%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
RL GR + +R+++ GS + G+T L T TL +
Sbjct: 315 RLDGRAPDVLRDVTCETGALPRVHGSAVFTRGETQSLATVTLGTSRDKQRVDGLFEEELQ 374
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
++ + V G R + R++ V+ I + D++++
Sbjct: 375 QFMLHYYFPSFSVGECRPIRGPGRREIGHGCLAERSVLPVLPNEEDFPYTIRVISDILES 434
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
+G + A++ A +AL D + + V K + D+ E
Sbjct: 435 NGSSSMASVCSATLALMDAGVPLRQPVAGISIGLVTK---------GKEYKILTDIIGDE 485
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
D D+D T G I +Q + +++ A L AK +L++ I
Sbjct: 486 DHFCDMDFKVAGTQKG-ITGIQLDLKNDGINEEIIKATLEQAKKARLELLRTMLTAIRR 543
Score = 98.8 bits (244), Expect = 6e-19, Method: Composition-based stats.
Identities = 45/233 (19%), Positives = 85/233 (36%), Gaps = 27/233 (11%)
Query: 13 EISLTRR-VSKYAEGSCLVKFGDTHL-LTTATLE--EKVPMWIRNTKHGWITAEYGMLPR 68
++SLT ++K A G+ LV++G+T + + AT + + + A G P
Sbjct: 13 KLSLTTGQLAKQAAGAVLVQYGETVVFVAAATGPGRPGIDFFPLTVDYRERAAASGKFPG 72
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
R GR + R+ R +R + QI +
Sbjct: 73 GFLKR------EGRPTTKEILTARLTDRPIRPLFPKGFHDELQIQSNVMSCDGINEPDVL 126
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
+I GA AL +G + A+ G + G IV ++ + + D+D
Sbjct: 127 SINGASAALC-------------LSPVPFQGPIGAVRIGRIDGELIVFPNHEQIAEGDLD 173
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
T ++ ++G + +D + LA +A + KLQ + + +
Sbjct: 174 LIVAGTIE-SVLMIEGFGNQ--IPEDEMLEAIMLAHTELAKICKLQLE-LREK 222
>gi|302335751|ref|YP_003800958.1| polyribonucleotide nucleotidyltransferase [Olsenella uli DSM 7084]
gi|301319591|gb|ADK68078.1| polyribonucleotide nucleotidyltransferase [Olsenella uli DSM 7084]
Length = 743
Score = 142 bits (357), Expect = 4e-32, Method: Composition-based stats.
Identities = 46/241 (19%), Positives = 85/241 (35%), Gaps = 18/241 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR ++R + + GS L + G T +L+ ATL E + I
Sbjct: 319 RVDGRSATEVRPLMVKPDYLPRVHGSGLFQRGQTQVLSIATLGMLNEWQRLDTIEPVDGK 378
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P TG + A R+ G RAL V+ I + +
Sbjct: 379 RYIHHYNFPPFCTGETGRMGAPKRREIGHGSL----AERALLPVIPSEDEFPYAIRVVSE 434
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
V++++G + A+ G+ +AL D + + + + + + D+
Sbjct: 435 VMESNGSSSMASTCGSTLALMDAGVPLARPVSGVAMGLIQE---------EGKTVVLTDI 485
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T G I +Q + + + L A + +++ +
Sbjct: 486 QGLEDFLGDMDFKVCGTVKG-ITAMQMDNKATGLTPEILRQALMQAHEGRMHILEAMLEQ 544
Query: 238 I 238
I
Sbjct: 545 I 545
Score = 65.3 bits (157), Expect = 7e-09, Method: Composition-based stats.
Identities = 40/225 (17%), Positives = 75/225 (33%), Gaps = 24/225 (10%)
Query: 15 SLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKV---PMWIRNTKHGWITAEYGMLPRST 70
+L ++K A G CLV G++ + T + ++ + G +P
Sbjct: 16 TLETGELAKQATGECLVSCGESTVNVTVVVSKERKNYDFFPLTVDFVEKMYAVGRIPGGY 75
Query: 71 GNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAI 130
R R ++ R+I R +R QI+ V T ++
Sbjct: 76 LKR------EARPSEKATLTARLIDRPIRPSFPEGFRNEVQIVAMPLVADQVNPVDTISV 129
Query: 131 TGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDAN 190
GA A+ E + + + G IV+ Y E D+D
Sbjct: 130 MGASAAMTVGGVPFEGPLACVR-----------VGRDVETGEFIVNPSYEERDASDLDLE 178
Query: 191 FVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
+ + I ++ A+ S+D A + ++ IA + Q+
Sbjct: 179 LAGSATF-ISMLEAGAKE--VSEDDMLAAMAFGQEAIAAFCEEQR 220
>gi|116075628|ref|ZP_01472887.1| ribonuclease PH [Synechococcus sp. RS9916]
gi|116066943|gb|EAU72698.1| ribonuclease PH [Synechococcus sp. RS9916]
Length = 255
Score = 142 bits (357), Expect = 4e-32, Method: Composition-based stats.
Identities = 97/239 (40%), Positives = 141/239 (58%), Gaps = 4/239 (1%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R GR +R ++ +A S +V+ G T +L + +E VP W + GW++A
Sbjct: 17 RNDGRSAADLRPFAINWDPMGFAISSLIVRTGRTAVLCSVCHQEGVPRWRKGQGKGWLSA 76
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
EY +LP ST R + + GR+QEIQR+IGR+LR+ +D+ ALG ++IDCDVIQA
Sbjct: 77 EYRLLPGSTPER--QNRELLKLSGRTQEIQRLIGRSLRACIDMEALGENTLLIDCDVIQA 134
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
D GTRTA+ITGAWVAL + Q + VAA+S G++ P++DLDY E
Sbjct: 135 DAGTRTASITGAWVALKHACDQLLAQ--GLVTRQPITKQVAAVSVGLVNSAPLLDLDYSE 192
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
DS DVD N VM + H++E+QG+AE A FS+ +L+LA+ + L+ Q+ + N
Sbjct: 193 DSRADVDLNVVMDEHQHLLEIQGTAEGAAFSRSELNGLLDLAEPGLQQLMDSQRQALRN 251
>gi|313836842|gb|EFS74556.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes
HL037PA2]
gi|314972179|gb|EFT16276.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes
HL037PA3]
Length = 735
Score = 142 bits (357), Expect = 4e-32, Method: Composition-based stats.
Identities = 46/242 (19%), Positives = 85/242 (35%), Gaps = 13/242 (5%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
+R+ GR +R +S + GS L + G+T +L +TL E+ +
Sbjct: 339 VRIDGRGPRDIRSLSAEVGIIPRVHGSALFQRGETQILGVSTLNMLDMEQKLDTLSPETS 398
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y M P STG + + R+ G RAL V+ I
Sbjct: 399 RRYMHNYNMPPYSTGETGRVGSPKRREIGHGNL----AERALIPVLPTREEFPYAIREVS 454
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+ I ++G T ++ + +AL + + + + + G + D
Sbjct: 455 EAIGSNGSTSMGSVCASTLALLNAGVPLRASVAGIAMGLMSETDE----DGKTKYLALTD 510
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED+ D+D T + +Q + D L AK+ ++++ D
Sbjct: 511 ILGAEDALGDMDFKVAGTSEF-VTALQLDTKLDGIPADVLAGALKQAKEARTAILEVMND 569
Query: 237 VI 238
I
Sbjct: 570 AI 571
Score = 73.7 bits (179), Expect = 2e-11, Method: Composition-based stats.
Identities = 41/245 (16%), Positives = 78/245 (31%), Gaps = 32/245 (13%)
Query: 14 ISLTRRV-SKYAEGSCLVKF-GDTHLLTTATLE----EKVPMWIRNTKHGWITAEYGMLP 67
+ + ++ A+GS V GDT LL+ T + + ++ G +P
Sbjct: 23 VRFEAGLLAQQADGSAAVYLDGDTMLLSATTAAKTPRDSIDFFLLTVDVEERMYAAGRIP 82
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
S R GR + R+I R LR Q+++ + +
Sbjct: 83 GSFFRR------EGRPSEGAILACRLIDRPLRPSFVKGLRNEVQVVVTVMALNSSVYYDV 136
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
AI A ++ +++ + V +P VD + V
Sbjct: 137 VAINAASMSTQLAGLPFSGPIGGVRMALIDDQWVC---------FPSVDQRKESTFDMVV 187
Query: 188 DANFVMTDSGHIVEVQGSAERATFS----------QDHFFAMLNLAKDRIADLIKLQKDV 237
+ I+ V+ + AT+S ++ L AK I L Q
Sbjct: 188 AGRVLADGDVAIMMVEAESTPATWSLVRGGRTAPTEEVVATGLEAAKPFIKVLCDAQV-A 246
Query: 238 ISNEV 242
++ ++
Sbjct: 247 LAAKL 251
>gi|314929746|gb|EFS93577.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes
HL044PA1]
gi|328907604|gb|EGG27368.1| guanosine pentaphosphate synthetase I/polyribonucleotide
nucleotidyltransferase [Propionibacterium sp. P08]
Length = 735
Score = 142 bits (357), Expect = 4e-32, Method: Composition-based stats.
Identities = 46/242 (19%), Positives = 85/242 (35%), Gaps = 13/242 (5%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
+R+ GR +R +S + GS L + G+T +L +TL E+ +
Sbjct: 339 VRIDGRGPRDIRSLSAEVGIIPRVHGSALFQRGETQILGVSTLNMLDMEQKLDTLSPETS 398
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y M P STG + + R+ G RAL V+ I
Sbjct: 399 RRYMHNYNMPPYSTGETGRVGSPKRREIGHGNL----AERALIPVLPTREEFPYAIREVS 454
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+ I ++G T ++ + +AL + + + + + G + D
Sbjct: 455 EAIGSNGSTSMGSVCASTLALLNAGVPLRASVAGIAMGLMSETDE----DGKTKYLALTD 510
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED+ D+D T + +Q + D L AK+ ++++ D
Sbjct: 511 ILGAEDALGDMDFKVAGTSEF-VTALQLDTKLDGIPADVLAGALKQAKEARTAILEVMND 569
Query: 237 VI 238
I
Sbjct: 570 AI 571
Score = 73.7 bits (179), Expect = 2e-11, Method: Composition-based stats.
Identities = 41/245 (16%), Positives = 77/245 (31%), Gaps = 32/245 (13%)
Query: 14 ISLTRRV-SKYAEGSCLVKF-GDTHLLTTATLE----EKVPMWIRNTKHGWITAEYGMLP 67
+ + ++ A+GS V GDT LL+ T + + + G +P
Sbjct: 23 VRFEAGLLAQQADGSAAVYLDGDTMLLSATTAAKTPRDSIDFFPLTVDVEERMYAAGRIP 82
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
S R GR + R+I R LR Q+++ + +
Sbjct: 83 GSFFRR------EGRPSEGAILACRLIDRPLRPSFVKGLRNEVQVVVTVMALNSSVYYDV 136
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
AI A ++ +++ + V +P VD + V
Sbjct: 137 VAINAASMSTQLAGLPFSGPIGGVRMALIDDQWVC---------FPSVDQRKESTFDMVV 187
Query: 188 DANFVMTDSGHIVEVQGSAERATFS----------QDHFFAMLNLAKDRIADLIKLQKDV 237
+ I+ V+ + AT+S ++ L AK I L Q
Sbjct: 188 AGRVLADGDVAIMMVEAESTPATWSLVRGGRTAPTEEVVATGLEAAKPFIKVLCDAQV-A 246
Query: 238 ISNEV 242
++ ++
Sbjct: 247 LAAKL 251
>gi|170077686|ref|YP_001734324.1| polynucleotide phosphorylase/polyadenylase [Synechococcus sp. PCC
7002]
gi|226704826|sp|B1XJU0|PNP_SYNP2 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|169885355|gb|ACA99068.1| polyribonucleotide nucleotidyltransferase [Synechococcus sp. PCC
7002]
Length = 714
Score = 142 bits (357), Expect = 4e-32, Method: Composition-based stats.
Identities = 49/245 (20%), Positives = 89/245 (36%), Gaps = 19/245 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYA-EGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTK 55
+R+ GR+ +Q+R IS V A GS L G T +L+ AT + + + +
Sbjct: 323 VRVDGRKLDQVRPISCRTAVLPRAVHGSGLFNRGLTQVLSIATLGTPGDAQEMDDLHPSD 382
Query: 56 HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115
Y P S G + R+ G RAL V+ I +
Sbjct: 383 EKRYLHHYNFPPYSVGETRPMRSPGRREIGHGAL----AERALLPVLPPKDEFPYVIRVV 438
Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIV 175
+V+ ++G T ++ G+ +AL D + + + + +G +
Sbjct: 439 SEVLSSNGSTSMGSVCGSTLALMDAGVPIAKPVSGAAMGLIKEGKEV---------RILT 489
Query: 176 DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
D+ ED D+D T G I +Q + + + + A +++
Sbjct: 490 DIQGIEDFLGDMDFKVAGTADG-ITALQMDMKITGLAVEVVAEAIKQALPARLHILEKMT 548
Query: 236 DVISN 240
DVI+
Sbjct: 549 DVIAE 553
Score = 112 bits (280), Expect = 4e-23, Method: Composition-based stats.
Identities = 51/235 (21%), Positives = 88/235 (37%), Gaps = 26/235 (11%)
Query: 10 QMREISLTRR-VSKYAEGSCLVKFGDTHLLTTAT---LEEKVPMWIRNTKHGWITAEYGM 65
REI L + A GS L++ GDT +L +AT + + + G
Sbjct: 11 DGREIRLKTGLFAPQAGGSVLIESGDTAVLVSATTAPGRQGIDFLPLLVDYEERLYAAGR 70
Query: 66 LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125
+P R GR R+ I R+I R +R + QI+ + +
Sbjct: 71 IPGGYLRR------EGRPPERATLISRLIDRPMRPLFPQWLRDDIQIVATTLSLDEEVPP 124
Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185
A+TGA VA G +AA+ G++ I++ Y E
Sbjct: 125 DVLAVTGASVATLLAG-------------LPFYGPMAAVRVGLVGDDFILNPTYREMMNG 171
Query: 186 DVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
D+D T G ++ V+ A + + ++ A + I +LI+ Q+ ++
Sbjct: 172 DLDLVVAGTPDG-VIMVEAGANQ--LPEADMIEAIDFAYEAIQELIEAQRALMKE 223
>gi|256827187|ref|YP_003151146.1| polyribonucleotide nucleotidyltransferase (polynucleotide
phosphorylase) [Cryptobacterium curtum DSM 15641]
gi|256583330|gb|ACU94464.1| polyribonucleotide nucleotidyltransferase (polynucleotide
phosphorylase) [Cryptobacterium curtum DSM 15641]
Length = 742
Score = 142 bits (357), Expect = 4e-32, Method: Composition-based stats.
Identities = 49/243 (20%), Positives = 89/243 (36%), Gaps = 18/243 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +++R + + GS L + G T L+ TL E + I ++
Sbjct: 315 RVDGRAADEIRPLYIRPGYLPRVHGSGLFQRGQTQALSVCTLGTLREGQRLDTIDPSEGK 374
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
+Y P TG + A R+ G RAL V+ I + +
Sbjct: 375 RYMHQYNFPPYCTGEVGRIGAPKRREIGHGAL----AERALIPVLPSEDDFPYAIRVVSE 430
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+++++G + A+ G+ +AL D + + + + +G I +
Sbjct: 431 ILESNGSSSMASTCGSTLALMDAGVPITAPVSGIAMGLIKEGDETVILSD---------I 481
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T G I +Q + S + L AK+ A ++ +
Sbjct: 482 QGLEDFLGDMDFKVTGTARG-ITALQMDNKARGLSTEILGRALAQAKEGRAFILSAMLEQ 540
Query: 238 ISN 240
IS
Sbjct: 541 ISE 543
Score = 86.8 bits (213), Expect = 2e-15, Method: Composition-based stats.
Identities = 44/230 (19%), Positives = 74/230 (32%), Gaps = 24/230 (10%)
Query: 15 SLTRR-VSKYAEGSCLVKFGDTHLLTTATL---EEKVPMWIRNTKHGWITAEYGMLPRST 70
L ++K A G+ LV G+T L TA + E+ + G +P
Sbjct: 16 RLETGELAKQATGAVLVTQGETTCLVTAVVSKEEKDYDFFPLTVDFMEKMYAVGRIPGGY 75
Query: 71 GNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAI 130
R G+ + RMI R +R I+ V +
Sbjct: 76 LKR------EGKASDKGTLTARMIDRPIRPGFPDGFKQEVHIVATTFVADGQNPPDCICV 129
Query: 131 TGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDAN 190
GA AL + + + I+ + G IV+ Y E D++
Sbjct: 130 GGASAALLAGGAPFDGPAACVR-----------IARNVETGEFIVNPTYAEQEESDLELT 178
Query: 191 FVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
T +I V+ A S++ A +N ++ IA Q+ +
Sbjct: 179 IAGTAD-YISMVEAGANE--VSEEDMLAAMNFGQEAIAAFCDAQQRFLDQ 225
>gi|166368080|ref|YP_001660353.1| polynucleotide phosphorylase/polyadenylase [Microcystis aeruginosa
NIES-843]
gi|189037309|sp|B0JYC3|PNP_MICAN RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|166090453|dbj|BAG05161.1| polyribonucleotide nucleotidyltransferase [Microcystis aeruginosa
NIES-843]
Length = 717
Score = 142 bits (357), Expect = 4e-32, Method: Composition-based stats.
Identities = 47/246 (19%), Positives = 88/246 (35%), Gaps = 20/246 (8%)
Query: 1 MRLSGRQENQMREISLTRRVSK-YAEGSCLVKFGDTHLLTTATLE-----EKVPMWIRNT 54
+R+ GRQ +++R IS V GS L G T +L+ ATL + + +
Sbjct: 322 VRVDGRQLDEVRPISCRVGVLPRRVHGSGLFNRGLTQVLSIATLGTPGDAQDLGDDLHPE 381
Query: 55 KHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIII 114
Y P S G + R+ G RA+ V+ + +
Sbjct: 382 DEKRYLHHYNFPPFSVGETRPMRSPGRREIGHGAL----AERAIVPVLPPQEEFPYVLRV 437
Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPI 174
+V+ ++G T ++ G+ +AL D ++ + + + +G +
Sbjct: 438 VSEVLSSNGSTSMGSVCGSTLALMDAGVPLKKPVSGAAMGLIKEGEEV---------RIL 488
Query: 175 VDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
D+ ED D+D TDSG I +Q + S + + A +++
Sbjct: 489 TDIQGIEDFLGDMDFKVAGTDSG-ITALQMDMKIPGLSMEVVAKAIEQALPARKHILEKM 547
Query: 235 KDVISN 240
+
Sbjct: 548 LATLEK 553
Score = 103 bits (257), Expect = 2e-20, Method: Composition-based stats.
Identities = 49/235 (20%), Positives = 89/235 (37%), Gaps = 26/235 (11%)
Query: 10 QMREISLTRRV-SKYAEGSCLVKFGDTHLLTTAT---LEEKVPMWIRNTKHGWITAEYGM 65
R+I L + + A GS L++ G+T +L TAT E V + G
Sbjct: 11 DGRDIRLKIGLLAPQAGGSVLIQSGETAVLVTATTAKAREGVDFLPLTVDYEERLYAAGR 70
Query: 66 LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125
+P R GR ++ R+I R LR + Q++ + +
Sbjct: 71 IPGGFLRR------EGRPPEKAILTGRLIDRPLRPLFPNWMRDDIQVVATTLSMDEEVPP 124
Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185
A+TGA VA+ +G +AA+ G+L I++ Y E
Sbjct: 125 DVLAVTGASVAVLLAGI-------------PFQGPMAAVRVGLLGDEFIINPTYKEIHNG 171
Query: 186 DVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
++D + G +V ++ A + + ++ + + DLI Q+++I
Sbjct: 172 ELDLVVAGSPEG-VVMIEAGANQ--LPERDIIEAIDFGYEAVRDLITAQRELIDQ 223
>gi|78358207|ref|YP_389656.1| polynucleotide phosphorylase/polyadenylase [Desulfovibrio
desulfuricans subsp. desulfuricans str. G20]
gi|123754803|sp|Q30WI5|PNP_DESDG RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|78220612|gb|ABB39961.1| Polyribonucleotide nucleotidyltransferase [Desulfovibrio
desulfuricans subsp. desulfuricans str. G20]
Length = 750
Score = 142 bits (357), Expect = 4e-32, Method: Composition-based stats.
Identities = 42/244 (17%), Positives = 81/244 (33%), Gaps = 19/244 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
+R+ GR +R I + A GS + G+T L TL +E+ +
Sbjct: 321 LRIDGRDTKTVRPIIIEAGALPRAHGSAIFSRGETKSLVVTTLGSTTDEQRMDSLTGDVT 380
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P S G R R + RALR V+ + +
Sbjct: 381 KRFMLHYNFPPYSVGEVKP-----VRVSRREIGHGALAERALRPVLPSPDSFPFTLRVVS 435
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+ ++++G + AA+ G ++L D ++ + + + +
Sbjct: 436 ETMESNGSSSMAAVCGGSLSLMDAGVPVKAPVAGIAMGLIKEDDQFIVLTD--------- 486
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED+ D+D T G + VQ + + L A++ ++
Sbjct: 487 ILGDEDALGDMDFKIAGTAEG-VTAVQMDIKIDGLPAEVMGRALAQAREARLHILNEMAK 545
Query: 237 VISN 240
V+
Sbjct: 546 VLPE 549
Score = 104 bits (258), Expect = 1e-20, Method: Composition-based stats.
Identities = 40/228 (17%), Positives = 79/228 (34%), Gaps = 25/228 (10%)
Query: 13 EISLTRR-VSKYAEGSCLVKFGDTHLLTTAT---LEEKVPMWIRNTKHGWITAEYGMLPR 68
EI + ++ A+G+ ++ G T +L T LE ++ + + G +P
Sbjct: 18 EIIMETGRLANQADGAVWIQCGGTVVLCTVCTQPLEREISFFPLVVDYTEKMYAAGRIPG 77
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
S R GR R + R+I R LR + QI+ + + +
Sbjct: 78 SFFRR-----EIGRPSERETLVSRLIDRPLRPLFPKGFTNEVQILANVISADQENDSDVL 132
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+ G+ A+ S + VA + G +++ E + D++
Sbjct: 133 ALCGSSAAVM-------------LSSVPFEAPVAGARVCRIDGEFVLNPTITEAAKADLN 179
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+V V+ E ++ L A + +I +Q+
Sbjct: 180 LVVAANRD-ALVMVE--GEADFVPEEVIAQALEWAHREVQPIIDMQEK 224
>gi|261338333|ref|ZP_05966217.1| polyribonucleotide nucleotidyltransferase [Bifidobacterium gallicum
DSM 20093]
gi|270277006|gb|EFA22860.1| polyribonucleotide nucleotidyltransferase [Bifidobacterium gallicum
DSM 20093]
Length = 895
Score = 142 bits (357), Expect = 5e-32, Method: Composition-based stats.
Identities = 44/241 (18%), Positives = 83/241 (34%), Gaps = 14/241 (5%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +R +S + GS L + G+T +L TL E+ +
Sbjct: 346 RIDGRGLRDIRTLSAEVGIVPRVHGSALFQRGETQILGVTTLNMLKMEQQIDALSGPTSK 405
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y M P STG + + R+ G +A+ V+ I +
Sbjct: 406 RYMHNYEMPPYSTGETGRVGSPKRREIGHGAL----AEKAIVPVLPSREEFPYAIRQVSE 461
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
I ++G T ++ + ++L D ++ + V + G + D+
Sbjct: 462 AIGSNGSTSMGSVCASTLSLLDAGVPLKAPVAGIAMGLV-----SGDVDGKHIFKTLTDI 516
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED+ D+D T I +Q + D L A + ++++ +
Sbjct: 517 LGAEDAFGDMDFKVAGTSEF-ITALQLDTKLDGIPADVLAGALKQAHEARTTILEVINEC 575
Query: 238 I 238
I
Sbjct: 576 I 576
Score = 68.7 bits (166), Expect = 7e-10, Method: Composition-based stats.
Identities = 36/242 (14%), Positives = 69/242 (28%), Gaps = 32/242 (13%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGD-THLLTTATLE----EKVPMWIRNTKHGWITAEYGM 65
R + +++ A+G+ D T +L+T T E + G
Sbjct: 21 RTLRFETGRLAQQADGAVAAYLDDDTMILSTTTAGSSPKENYDFFPLTVDVEEKMYAAGK 80
Query: 66 LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125
+P S R GR + R+I R LR + + Q++ + D
Sbjct: 81 IPGSFFRR------EGRPSTEAILACRIIDRPLRPLFPHTLRNEVQVVETILAVNPDDAY 134
Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185
A+ A + + +L+ + VA + G
Sbjct: 135 DVVALNAASASTLISGLPFGGPVSGVRLALIDGQWVAFPRWSERERAVFEIVVAGR---- 190
Query: 186 DVDANFVMTDSGHIVEVQGSAERATF-----------SQDHFFAMLNLAKDRIADLIKLQ 234
V I ++ A + + ++ L AK I + + Q
Sbjct: 191 -----VVDNGDVAIAMIEAGAGKNAWKLIYDEGHMKPDEEVVAGGLEAAKPFIKVICEAQ 245
Query: 235 KD 236
+
Sbjct: 246 DE 247
>gi|331698425|ref|YP_004334664.1| polyribonucleotide nucleotidyltransferase [Pseudonocardia
dioxanivorans CB1190]
gi|326953114|gb|AEA26811.1| Polyribonucleotide nucleotidyltransferase [Pseudonocardia
dioxanivorans CB1190]
Length = 750
Score = 142 bits (357), Expect = 5e-32, Method: Composition-based stats.
Identities = 47/242 (19%), Positives = 87/242 (35%), Gaps = 14/242 (5%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
+R+ GR +R +S V A GS L + G+T ++ TL E+ + H
Sbjct: 341 VRIDGRGLTDIRPLSAEVEVVPRAHGSALFERGETQIMGVTTLNMLRMEQQIDSLGPETH 400
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P STG + + R+ G RAL V+ I
Sbjct: 401 KRYLHHYNFPPYSTGETGRVGSPKRREIGHGAL----AERALLPVLPTREEFPYAIRQVS 456
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+ + ++G T ++ + ++L + ++ + V G + D
Sbjct: 457 EALGSNGSTSMGSVCASTMSLLNAGVPLKAPVAGIAMGLVSDE-----VDGKATYVALTD 511
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED+ D+D T + +Q + + A LN AKD ++++ +
Sbjct: 512 ILGAEDAFGDMDFKVAGTSDF-VTALQLDTKLDGIPSEVLAAALNQAKDARLTILEVLGE 570
Query: 237 VI 238
I
Sbjct: 571 AI 572
Score = 76.8 bits (187), Expect = 3e-12, Method: Composition-based stats.
Identities = 42/244 (17%), Positives = 68/244 (27%), Gaps = 38/244 (15%)
Query: 12 REISLTRR-VSKYAEGSCLVKF-GDTHLLTTATLE----EKVPMWIRNTKHGWITAEYGM 65
R I +++ A GS + +T LL+ T E+ + G
Sbjct: 24 RTIRFETGRLARQAAGSVVAYLDDETMLLSATTASKQPKEQFDFFPLTVDVEERMYAIGK 83
Query: 66 LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125
+P S R GR G + R+I R LR QI++ +
Sbjct: 84 IPGSFFRR------EGRPGTDAILTCRLIDRPLRPSFVDGLRNEIQIVVTVLSLDPRDPY 137
Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185
AI A + G + + ++ G + Y +
Sbjct: 138 DALAINAASASTQLAG-------------LPFSGPIGGVRVALIDGQWVAFPQYEDLQRA 184
Query: 186 DVDANFVM---TDSGHIVEVQGSAERATF----------SQDHFFAMLNLAKDRIADLIK 232
D D I+ V+ A T ++ L AK I L
Sbjct: 185 VFDMVVAGRIVGDDVAIMMVEAEATTETVELVAGGAQAPTEQVVAQGLEAAKPFIRSLCV 244
Query: 233 LQKD 236
Q+
Sbjct: 245 AQQQ 248
>gi|330443786|ref|YP_004376772.1| polyribonucleotide nucleotidyltransferase [Chlamydophila pecorum
E58]
gi|328806896|gb|AEB41069.1| polyribonucleotide nucleotidyltransferase [Chlamydophila pecorum
E58]
Length = 693
Score = 142 bits (357), Expect = 5e-32, Method: Composition-based stats.
Identities = 43/243 (17%), Positives = 86/243 (35%), Gaps = 18/243 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKH 56
+R R +R IS+ + GSCL G+T + TL + +
Sbjct: 313 IRADKRALTTIRPISIEVALLPRTHGSCLFTRGETQTVAVCTLGNETMAQRYENLNGEGS 372
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
+Y P S G + + R+ G + +AL + + I I+
Sbjct: 373 SKFYLQYSFPPFSVGEVGRIGSPGRREIGHGKL----AEKALAHALPDATQFPYTIRIES 428
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
++ +++G + A++ G +AL D ++ + +L A I
Sbjct: 429 NITESNGSSSMASVCGGCLALMDAGVPIKTPIAGIAMGLILDAEEAIILSD--------- 479
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D G I Q + + D L AK+ +++++ +
Sbjct: 480 ISGLEDHLGDMDFKVAGNLEG-ITAFQMDIKIEGITLDIMKQALAQAKEGRQEILRIMHE 538
Query: 237 VIS 239
++
Sbjct: 539 NLA 541
Score = 88.0 bits (216), Expect = 1e-15, Method: Composition-based stats.
Identities = 41/234 (17%), Positives = 75/234 (32%), Gaps = 26/234 (11%)
Query: 7 QENQMREISLTRR-VSKYAEGSCLVKFGDTHL---LTTATLEEKVPMWIRNTKHGWITAE 62
+ R + +++ A GS +V+ DT + + A L E + +
Sbjct: 9 TLEEGRVLIFETGKIARQAGGSVVVRSQDTLVFTSVCAADLSETSDFLPFRVDYQEKFSS 68
Query: 63 YGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQAD 122
G R GR + + R+I R+LR + + QI+
Sbjct: 69 TGKTLGGFIKR------EGRPTEKEILVSRLIDRSLRPSLPNRLMQDIQILSYVWSYDGQ 122
Query: 123 GGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGED 182
AI GA A + V+ + G + G IV+ E
Sbjct: 123 TLPDPLAICGAGAA-------------LALSNIPQNNIVSGVRIGYIDGQWIVNPTKTEL 169
Query: 183 STIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
D T++ I+ ++ A F+++ ++ I + K KD
Sbjct: 170 DNSPFDLVLAGTEN-AILMIE--GHCAFFTEEQVLEAIDYGHKHIITICKGLKD 220
>gi|119510054|ref|ZP_01629194.1| polyribonucleotide nucleotidyltransferase [Nodularia spumigena
CCY9414]
gi|119465241|gb|EAW46138.1| polyribonucleotide nucleotidyltransferase [Nodularia spumigena
CCY9414]
Length = 718
Score = 142 bits (357), Expect = 5e-32, Method: Composition-based stats.
Identities = 47/246 (19%), Positives = 89/246 (36%), Gaps = 20/246 (8%)
Query: 1 MRLSGRQENQMREISLTRRVSK-YAEGSCLVKFGDTHLLTTATLE-----EKVPMWIRNT 54
+R+ GR+ +++R +S V GS L G T +L+T TL + + ++
Sbjct: 322 VRVDGRKLDEVRPVSCQVGVLPKRVHGSGLFNRGLTQVLSTCTLGTPGDAQNLNDDLQTD 381
Query: 55 KHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIII 114
+ Y P S G R+ G RAL V+ I +
Sbjct: 382 QSKRYLHHYNFPPFSVGETKPMRFPGRREIGHGAL----AERALVPVLPSKEAFPYVIRV 437
Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPI 174
+V+ ++G T ++ G+ ++L D + + + + +G +
Sbjct: 438 VSEVLSSNGSTSMGSVCGSTLSLMDAGVPILKPVSGAAMGLIKEGDEVRVLTD------- 490
Query: 175 VDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
+ ED D+D TD+G I +Q + + S D ++ AK ++
Sbjct: 491 --IQGIEDFLGDMDFKVAGTDTG-ITALQMDMKISGLSLDVIAQAVHQAKSARLHILDKM 547
Query: 235 KDVISN 240
I
Sbjct: 548 LQTIQE 553
Score = 106 bits (263), Expect = 4e-21, Method: Composition-based stats.
Identities = 49/235 (20%), Positives = 88/235 (37%), Gaps = 26/235 (11%)
Query: 10 QMREISLTRRV-SKYAEGSCLVKFGDTHLLTTAT---LEEKVPMWIRNTKHGWITAEYGM 65
R+I L + + A GS L++ GDT +L TAT E + + G
Sbjct: 11 DGRDIRLKVGLLAPQAGGSVLIESGDTSVLVTATRSKGREGIDFLPLTVDYEERLYAAGR 70
Query: 66 LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125
+P R GR ++ R+I R +R + QII +
Sbjct: 71 IPGGIMRR------EGRPPEKTILTSRLIDRPMRPLFPTWLRDDLQIIAFTLSMDELVPP 124
Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185
A+TGA +A G +AA+ G++ I++ Y E
Sbjct: 125 DVLAVTGASIATLMAQI-------------PFNGPMAAVRVGLVGDDFIINPTYAETENG 171
Query: 186 DVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
D+D + G ++ V+ A + + ++ + + DLI+ Q+D+++
Sbjct: 172 DLDLIVAGSPHG-VIMVEAGANQ--LPEQDIIEAIDFGYEAVRDLIQAQQDLLAE 223
>gi|56963987|ref|YP_175718.1| polynucleotide phosphorylase/polyadenylase [Bacillus clausii
KSM-K16]
gi|81366005|sp|Q5WFU8|PNP_BACSK RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|56910230|dbj|BAD64757.1| polyribonucleotide nucleotidyltransferase [Bacillus clausii
KSM-K16]
Length = 710
Score = 142 bits (357), Expect = 5e-32, Method: Composition-based stats.
Identities = 44/242 (18%), Positives = 87/242 (35%), Gaps = 18/242 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56
+R GR +++R +S ++ GS L G T L+ T + +V + +
Sbjct: 313 IRPDGRGVDEIRPLSSQIKLLPRTHGSGLFTRGQTQALSVCTLGALGDVQVLDGLGIEET 372
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y S G A R+ G RAL V+ I +
Sbjct: 373 KRFMHHYNFPQFSVGETGPIRAPGRREIGHGALG----ERALEQVIPSEQEFPYTIRLVS 428
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V++++G T A+I + +A+ D ++ + V +G +
Sbjct: 429 EVLESNGSTSQASICASTLAMMDAGVPIKAPVAGIAMGLVKQGEHMTVLTD--------- 479
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED+ D+D T +G + +Q + + +++ L AK ++ +
Sbjct: 480 IQGMEDALGDMDFKVAGTANG-VTALQMDIKISGINREVLEQALEQAKQGRMKILSNMME 538
Query: 237 VI 238
I
Sbjct: 539 AI 540
Score = 112 bits (280), Expect = 4e-23, Method: Composition-based stats.
Identities = 49/232 (21%), Positives = 89/232 (38%), Gaps = 26/232 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATL---EEKVPMWIRNTKHGWITAEYGMLP 67
R +S+ ++K A G+ LV++GDT +L+TAT + +P + + G +P
Sbjct: 15 RTLSVEVGQLAKQANGAVLVRYGDTAVLSTATASKEPKDLPFFPLTVNYEERLYAAGKIP 74
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R GR R+ R+I R +R + Q+I D
Sbjct: 75 GGFIKR------EGRPSERAILTSRLIDRPIRPLFPDGFRNDVQVISIVMSSDQDASPEM 128
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
AA+ G+ +AL +G +A ++ G + G I++ + + D+
Sbjct: 129 AAMIGSSLALC-------------VSDIPFEGPIAGVTVGRINGEFIMNPTPAQLAESDI 175
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
D T I V+ A+ +D + + I +I Q+ V+
Sbjct: 176 DLTVAGTKE-AINMVEAGAKEVP--EDVMLEAILAGHENIKKMIAFQEKVVE 224
>gi|16329253|ref|NP_439981.1| polynucleotide phosphorylase/polyadenylase [Synechocystis sp. PCC
6803]
gi|81670191|sp|P72659|PNP_SYNY3 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|1651733|dbj|BAA16661.1| polyribonucleotide nucleotidyltransferase [Synechocystis sp. PCC
6803]
Length = 718
Score = 142 bits (357), Expect = 5e-32, Method: Composition-based stats.
Identities = 47/246 (19%), Positives = 85/246 (34%), Gaps = 20/246 (8%)
Query: 1 MRLSGRQENQMREISLTRRVSK-YAEGSCLVKFGDTHLLTTATLE-----EKVPMWIRNT 54
+R+ GR+ Q+R IS GS L G T +L+ ATL + + +
Sbjct: 323 VRVDGRKLEQVRPISCEVGFLPRRVHGSGLFNRGLTQVLSLATLGSPGDAQDLADDLHPE 382
Query: 55 KHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIII 114
Y P S G + R+ G RA+ V+ + +
Sbjct: 383 DEKRYLHHYNFPPYSVGEARPMRSPGRREIGHGAL----AERAIIPVLPPQEDFPYVVRV 438
Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPI 174
+V+ ++G T ++ G+ +AL D ++ + + + +G +
Sbjct: 439 VSEVLSSNGSTSMGSVCGSTLALMDAGVPIKKPVSGAAMGLIKEGDEI---------RIL 489
Query: 175 VDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
D+ ED D+D TDSG I +Q + S + + A ++
Sbjct: 490 TDIQGIEDFLGDMDFKVAGTDSG-ITALQMDMKIDGLSMEVVSKAIMQALPARLHILDKM 548
Query: 235 KDVISN 240
I
Sbjct: 549 LATIRE 554
Score = 109 bits (272), Expect = 4e-22, Method: Composition-based stats.
Identities = 53/235 (22%), Positives = 93/235 (39%), Gaps = 26/235 (11%)
Query: 10 QMREISLTRR-VSKYAEGSCLVKFGDTHLLTTAT---LEEKVPMWIRNTKHGWITAEYGM 65
R+I L ++ A GS L++ GDT +L TAT + + + G
Sbjct: 11 DGRDIRLKMGTLAPQAGGSVLIQSGDTAVLVTATRAKGRDGIDFLPLTVDYEGRLYAAGR 70
Query: 66 LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125
+P R GR ++ I R+I R LR + QI+ + +
Sbjct: 71 IPGGFLRR------EGRPPEKATLISRLIDRPLRPLFPHWLRDELQIVATTLSMDEEVPP 124
Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185
A+TGA VA+ KG +AA+ G++ I++ Y E
Sbjct: 125 DVLAVTGASVAVILAQI-------------PFKGPMAAVRVGLVGDDFIINPTYREVHNG 171
Query: 186 DVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
D+D T +G IV V+ A + + ++ + + DLI Q++++++
Sbjct: 172 DLDLVVAGTPAG-IVMVEAGANQ--LPEQDIIEAIDFGYEAVQDLINAQRELMTD 223
>gi|308233974|ref|ZP_07664711.1| polyribonucleotide nucleotidyltransferase [Atopobium vaginae DSM
15829]
gi|328944017|ref|ZP_08241482.1| polyribonucleotide nucleotidyltransferase [Atopobium vaginae DSM
15829]
gi|327491986|gb|EGF23760.1| polyribonucleotide nucleotidyltransferase [Atopobium vaginae DSM
15829]
Length = 751
Score = 142 bits (357), Expect = 5e-32, Method: Composition-based stats.
Identities = 44/241 (18%), Positives = 85/241 (35%), Gaps = 18/241 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR ++R + + GS L + G T +L+ ATL E + I T+
Sbjct: 319 RVDGRSATEVRPLMVKGDYLPLVHGSGLFQRGQTQVLSIATLGMLSEWQRLDTIEPTEGK 378
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P TG + + R+ G RAL V+ I + +
Sbjct: 379 RYIHHYNFPPYCTGETGRLGSPKRREIGHGNL----AERALLPVIPSEEEFPYAIRVVSE 434
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
V++++G + A+ G+ +AL D ++ + + + + + +
Sbjct: 435 VMESNGSSSMASTCGSTLALMDAGVPIKRPVSGVAMGLIQEEGKTVVLTD---------I 485
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T G I +Q + + + L A + ++
Sbjct: 486 QGLEDFLGDMDFKVTGTTKG-ITAMQMDNKATGLTPEILRQALKQAHEGRMHILDAMLAA 544
Query: 238 I 238
+
Sbjct: 545 V 545
Score = 83.0 bits (203), Expect = 4e-14, Method: Composition-based stats.
Identities = 43/225 (19%), Positives = 71/225 (31%), Gaps = 24/225 (10%)
Query: 15 SLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKV---PMWIRNTKHGWITAEYGMLPRST 70
L ++K A G CLV GD+ + T + ++ + G +P
Sbjct: 16 KLESGELAKQATGQCLVSCGDSTVNLTVVVSKERKNYDFFPLTVDFIEKMYAVGRIPGGY 75
Query: 71 GNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAI 130
R R ++ RMI R +R QI+ V T +
Sbjct: 76 LKR------EARPTEKATLTARMIDRPIRPSFPDGFRNEVQIVAMPLVADQIHPVDTICV 129
Query: 131 TGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDAN 190
GA A++ E + I G +V+ Y E D+D
Sbjct: 130 MGASAAMYTGGVPFEGPLACVR-----------IGRDKTTGEYLVNPTYEERKNSDLDLE 178
Query: 191 FVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
+++ I ++ AE S+D + + IA QK
Sbjct: 179 LAGSETF-ISMLEAGAEE--ISEDDMLDAMAFGQKAIAAFCAEQK 220
>gi|187251573|ref|YP_001876055.1| polyribonucleotide nucleotidyltransferase [Elusimicrobium minutum
Pei191]
gi|257096702|sp|B2KDX2|PNP_ELUMP RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|186971733|gb|ACC98718.1| Polyribonucleotide nucleotidyltransferase [Elusimicrobium minutum
Pei191]
Length = 698
Score = 142 bits (357), Expect = 5e-32, Method: Composition-based stats.
Identities = 39/241 (16%), Positives = 85/241 (35%), Gaps = 11/241 (4%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+R+ GR+ +++R+++ + A GS L G T L TL + +
Sbjct: 318 VRVDGRKTDEIRQLNSITGLLPRAHGSALFTRGQTQGLVVTTLGTSGDAQLVESLEESYD 377
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
+ + G G R + RAL ++ + I + D+++
Sbjct: 378 ETFMLHYNFPGFSTGECKPDRAPGRREIGHGELARRALLPLIPDADKFPYTIRVVSDIME 437
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
++G + A++ G ++L D M+ + + + +G A+ ++
Sbjct: 438 SNGSSSMASVCGGSLSLFDAGVPMKAACSGIAMGLIKEGDKYAVLSDIM---------GL 488
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAE-RATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
ED D+D + +G I Q + S + + A ++ V+
Sbjct: 489 EDHLGDMDFKLTGSRNG-ITAFQMDVKLAGGISIEILKEAVAQATKGRMHIMDHMDSVLP 547
Query: 240 N 240
Sbjct: 548 E 548
Score = 106 bits (264), Expect = 3e-21, Method: Composition-based stats.
Identities = 51/234 (21%), Positives = 83/234 (35%), Gaps = 29/234 (12%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT-----KHGWITAEYGMLP 67
+SL V+K A+GS + + GDT +L TA ++ I + + T G +P
Sbjct: 18 LSLETGWVAKQADGSVIARMGDTMVLATAVSDKVQKPGISDFVPLTVNYKERTYAAGKIP 77
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R R + R+I R+LR + + T
Sbjct: 78 GGFFKR------ESRASKKETLASRIIDRSLRPLFPSGYTCETNVTAMVLSADGVYDTEV 131
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
A+ + A S VAA+ G L G IV+ E + D+
Sbjct: 132 LAVMASSTA-------------LIISSIPFTTPVAAVRIGRLNGNFIVNPTLEEQKSCDM 178
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
D + G ++ V+G A+ S++ L AK I L K Q + + +
Sbjct: 179 DLIISGSLEG-MLMVEGGAKE--VSEEDVIKALETAKPAIDILCKAQLE-LKEK 228
>gi|313889611|ref|ZP_07823255.1| polyribonucleotide nucleotidyltransferase [Streptococcus
pseudoporcinus SPIN 20026]
gi|313122038|gb|EFR45133.1| polyribonucleotide nucleotidyltransferase [Streptococcus
pseudoporcinus SPIN 20026]
Length = 742
Score = 142 bits (357), Expect = 5e-32, Method: Composition-based stats.
Identities = 43/243 (17%), Positives = 80/243 (32%), Gaps = 18/243 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56
+R GRQ +++R + GS L G T L+ T E ++ +
Sbjct: 328 IRPDGRQIDEIRPLDAQVDFLPKVHGSGLFTRGQTQALSVLTLAPMGETQIIDGLDEEYK 387
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y S G + A R+ G RAL V+ I +
Sbjct: 388 KRFMHHYNFPQYSVGETGRYGAAGRREIGHGALG----ERALAQVLPSLEDFPYAIRLVA 443
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V++++G + A+I +AL ++ + + + D
Sbjct: 444 EVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISD---------GKNYTVLTD 494
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T G I +Q + + L AK +++ + +
Sbjct: 495 IQGLEDHFGDMDFKVAGTREG-ITALQMDIKIEGITPQILEEALAQAKKARFEILDVIEA 553
Query: 237 VIS 239
I+
Sbjct: 554 TIA 556
Score = 102 bits (254), Expect = 4e-20, Method: Composition-based stats.
Identities = 39/231 (16%), Positives = 82/231 (35%), Gaps = 26/231 (11%)
Query: 13 EISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKV---PMWIRNTKHGWITAEYGMLPR 68
+ + V+K A G+ +V++G++ +LT A + +K+ + + G P
Sbjct: 25 PLVVEVGQVAKQANGATVVRYGESTVLTAAVMSKKMATGDFFPLQVNYEEKMYAAGKFPG 84
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
R GR + R+I R +R + Q+I +
Sbjct: 85 GFMKR------EGRPSTDATLTARLIDRPIRPMFAEGFRNEIQVINTVLSYDENASAPMV 138
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+ G+ +A G +A + G + G +++ D + ++
Sbjct: 139 AMFGSSLA-------------LSISDIPFNGPIAGVQVGYIDGQFVINPDKAQMEASLLE 185
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
+ I V+ A+ S+D L I +LI Q+++++
Sbjct: 186 LTVAGSKE-AINMVESGAKE--LSEDIMLEALLKGHQAIQELIAFQEEIVA 233
>gi|188994656|ref|YP_001928908.1| polynucleotide phosphorylase/polyadenylase [Porphyromonas
gingivalis ATCC 33277]
gi|188594336|dbj|BAG33311.1| polyribonucleotide nucleotidyltransferase [Porphyromonas gingivalis
ATCC 33277]
Length = 774
Score = 142 bits (357), Expect = 5e-32, Method: Composition-based stats.
Identities = 49/240 (20%), Positives = 84/240 (35%), Gaps = 18/240 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
RL GR+ ++R I + GS + G+T LTT TL +EK+ + N
Sbjct: 349 RLDGRKATEIRPIWIETDCLPGPHGSAIFTRGETQSLTTVTLGTKSDEKLVDDVLNYTKE 408
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P STG + V R+ G RAL+ ++ ++I D
Sbjct: 409 RFLLHYNFPPFSTGEARPQRGVGRREIGHGNL----AHRALKRMIPTDYPYVVRVISDIL 464
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+++G + A + +AL D + + + + + + D+
Sbjct: 465 --ESNGSSSMATVCAGTLALRDAGVQIRKPVSGIAMGLISE-------NQGKNYAILSDI 515
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T G I Q + S + L AK ++ +
Sbjct: 516 LGDEDHLGDMDFKVTGTKDG-ITATQMDIKVDGLSYEILENALEQAKQGRLHILGKIMEA 574
Score = 100 bits (248), Expect = 2e-19, Method: Composition-based stats.
Identities = 36/237 (15%), Positives = 69/237 (29%), Gaps = 20/237 (8%)
Query: 7 QENQMREISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGM 65
R I + ++K A+G+ V G+T LL T + E
Sbjct: 41 DLGDGRSIKIETGKLAKQADGAVTVTMGNTVLLATVCAAKDANPGCDFMPLQVEYKEKYS 100
Query: 66 LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125
G+ R++ RALR + +
Sbjct: 101 AIGRFP--GGFTRREGKASDYEILTCRLVDRALRPLFPDNYHAEVF-------------V 145
Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185
+ + D L + + G ++ + + G IV+ + +
Sbjct: 146 NVILFSADGEDMPDALAGLAASAALAVSDIPFNGPISEVRVARVDGRYIVNPTFEQLERA 205
Query: 186 DVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNEV 242
D+D T +I+ V+ E + + +A + I K Q + +S V
Sbjct: 206 DIDLMVGATMD-NIMMVE--GEMDEVQESEMLEGIRVAHEAIKVQCKAQLE-LSEAV 258
>gi|183601888|ref|ZP_02963257.1| polynucleotide phosphorylase/polyadenylase [Bifidobacterium
animalis subsp. lactis HN019]
gi|219682802|ref|YP_002469185.1| polynucleotide phosphorylase/polyadenylase [Bifidobacterium
animalis subsp. lactis AD011]
gi|241190378|ref|YP_002967772.1| polynucleotide phosphorylase/polyadenylase [Bifidobacterium
animalis subsp. lactis Bl-04]
gi|241195784|ref|YP_002969339.1| polynucleotide phosphorylase/polyadenylase [Bifidobacterium
animalis subsp. lactis DSM 10140]
gi|254782707|sp|B8DVV8|PNP_BIFA0 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|183218773|gb|EDT89415.1| polynucleotide phosphorylase/polyadenylase [Bifidobacterium
animalis subsp. lactis HN019]
gi|219620452|gb|ACL28609.1| guanosine pentaphosphate synthetase I/polyribonucleotide
nucleotidyltransferase [Bifidobacterium animalis subsp.
lactis AD011]
gi|240248770|gb|ACS45710.1| polynucleotide phosphorylase/polyadenylase [Bifidobacterium
animalis subsp. lactis Bl-04]
gi|240250338|gb|ACS47277.1| polynucleotide phosphorylase/polyadenylase [Bifidobacterium
animalis subsp. lactis DSM 10140]
gi|289178101|gb|ADC85347.1| Polyribonucleotide nucleotidyltransferase [Bifidobacterium animalis
subsp. lactis BB-12]
gi|295793365|gb|ADG32900.1| polynucleotide phosphorylase/polyadenylase [Bifidobacterium
animalis subsp. lactis V9]
Length = 873
Score = 142 bits (357), Expect = 5e-32, Method: Composition-based stats.
Identities = 44/241 (18%), Positives = 82/241 (34%), Gaps = 14/241 (5%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +R +S V GS L + G+T +L TL E+ +
Sbjct: 346 RIDGRGLRDIRTLSAEIDVVPRVHGSALFQRGETQILGITTLNMLKMEQQIDALSGPTTK 405
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y M P STG + + R+ G +A+ V+ I +
Sbjct: 406 RYMHNYEMPPYSTGETGRVGSPKRREIGHGAL----AEKAIVPVLPSREEFPYAIRQVSE 461
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
I ++G T ++ + ++L ++ + V + G + D+
Sbjct: 462 AIGSNGSTSMGSVCASTLSLLAAGVPLKAPVAGIAMGLV-----SGDVDGQHIYKTLTDI 516
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED+ D+D T I +Q + D L A + ++++ +
Sbjct: 517 LGAEDAFGDMDFKVAGTADF-ITALQLDTKLDGIPADVLAGALKQAHEARKTILEVINEC 575
Query: 238 I 238
I
Sbjct: 576 I 576
>gi|240171316|ref|ZP_04749975.1| polynucleotide phosphorylase/polyadenylase [Mycobacterium kansasii
ATCC 12478]
Length = 756
Score = 142 bits (357), Expect = 5e-32, Method: Composition-based stats.
Identities = 45/245 (18%), Positives = 82/245 (33%), Gaps = 12/245 (4%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKH 56
R+ GR +R +S V A GS L + G+T +L TL+ + +
Sbjct: 342 FRIDGRGITDIRALSAEVAVVPRAHGSALFERGETQILGVTTLDMVKMAQQIDSLGPETT 401
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P STG + + R+ G RAL V+ I
Sbjct: 402 KRYMHHYNFPPFSTGETGRVGSPKRREIGHGAL----AERALVPVLPGVEEFPYAIRQVS 457
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIV- 175
+ + ++G T ++ + +AL + ++ + V G V
Sbjct: 458 EALGSNGSTSMGSVCASTLALLNAGVPLKAPVAGIAMGLVSDDIEVEGDDGKRTERRFVT 517
Query: 176 --DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
D+ ED+ D+D T + +Q + L A+D ++++
Sbjct: 518 LTDILGAEDAFGDMDFKVAGTKDF-VTALQLDTKLDGIPSQVLAGALEQARDARLTILEV 576
Query: 234 QKDVI 238
+ I
Sbjct: 577 MAEAI 581
>gi|290473451|ref|YP_003466318.1| polynucleotide phosphorylase, has polyadenylase activity
[Xenorhabdus bovienii SS-2004]
gi|289172751|emb|CBJ79522.1| polynucleotide phosphorylase, has polyadenylase activity
[Xenorhabdus bovienii SS-2004]
Length = 714
Score = 142 bits (357), Expect = 5e-32, Method: Composition-based stats.
Identities = 45/243 (18%), Positives = 91/243 (37%), Gaps = 18/243 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR+++ +R + + V GS L G+T L ATL + +V + +
Sbjct: 319 RIDGREKDMVRALDVRTGVLPRTHGSSLFTRGETQALVAATLGTERDAQVIDELMGERAD 378
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + R+ G + R + +V+ + I + +
Sbjct: 379 RFLFHYNFPPYSVGETGMVGSPKRREIGHGRL----AKRGVLAVMPTANEFPYTIRVVSE 434
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ GA +AL D ++ + V +G + +
Sbjct: 435 ITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNFVVLSD---------I 485
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D + G I +Q + + + LN AK ++ + +
Sbjct: 486 LGDEDHLGDMDFKVAGSRDG-ISALQMDIKIEGITSEIMQVALNQAKGARLHILGVMEQA 544
Query: 238 ISN 240
I +
Sbjct: 545 IQS 547
Score = 93.4 bits (230), Expect = 3e-17, Method: Composition-based stats.
Identities = 38/232 (16%), Positives = 77/232 (33%), Gaps = 27/232 (11%)
Query: 14 ISLTRRV-SKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----HGWITAEYGMLPR 68
+++ + ++ A + +V DT + T ++K+ + T G +P
Sbjct: 16 VTIETGMMARQATAAVMVNMDDTAVFVTVVGQKKMKAGQDFFPLTVNYQERTYAAGRIPG 75
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
S R GR G + R+I R LR + L QII +
Sbjct: 76 SFFRR------EGRPGEGETLVARLIDRPLRPLFPEGFLNEVQIIATVVSVNPLVNPDIV 129
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+ GA A G + A G + +++ E +D
Sbjct: 130 AMIGASAA-------------LALSGIPFNGPIGAARVGYINDQYVLNPTSDELKNSRLD 176
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
T +G ++ V+ AE +++ + ++ +I +++
Sbjct: 177 LVVAGT-AGAVLMVESEAEL--LTEEQMLGAVVFGHEQQQIVIDHINALVAE 225
>gi|325688998|gb|EGD31006.1| polyribonucleotide nucleotidyltransferase [Streptococcus sanguinis
SK115]
gi|325695521|gb|EGD37421.1| polyribonucleotide nucleotidyltransferase [Streptococcus sanguinis
SK150]
Length = 733
Score = 141 bits (356), Expect = 5e-32, Method: Composition-based stats.
Identities = 44/242 (18%), Positives = 81/242 (33%), Gaps = 18/242 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56
+R GR+ +++R + GS L G T L+ T E ++ +
Sbjct: 317 IRPDGRKVDEIRPLDAEVDYLPCVHGSGLFTRGQTQALSVLTLAPMGETQIVDGLDPEYK 376
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y S G + A R+ G RAL V+ I +
Sbjct: 377 KRFMHHYNFPQYSVGETGRYGAPGRREIGHGALG----ERALEQVLPSLEEFPYAIRLVA 432
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V++++G + A+I +AL ++ + + + D
Sbjct: 433 EVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISD---------GSNYTVLTD 483
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T G I +Q + A + + L AK +++ L +
Sbjct: 484 IQGLEDHFGDMDFKVAGTREG-ITALQMDIKIAGITAEILTEALAQAKKARFEILDLIEA 542
Query: 237 VI 238
I
Sbjct: 543 TI 544
Score = 116 bits (291), Expect = 2e-24, Method: Composition-based stats.
Identities = 46/232 (19%), Positives = 87/232 (37%), Gaps = 26/232 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKV---PMWIRNTKHGWITAEYGMLP 67
RE+ + V+K A GS +V++G++ +LT AT+ +K+ + + G P
Sbjct: 13 RELVVETGQVAKQANGSAVVRYGESTVLTAATMSKKMATGDFFPLQVNYEEKMYAAGKYP 72
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R GR + R+I R +R + Q+I D +
Sbjct: 73 GGFNKR------EGRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDEDASPQM 126
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
AA+ G+ +A G +A + G + G I++ + +
Sbjct: 127 AAMFGSSLA-------------LSISDIPFNGPIAGVQVGYVDGEFIINPSKEQKEVSLL 173
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
+ T I V+ A+ S+D L + + +LI Q+++I+
Sbjct: 174 ELTVAGTKE-AINMVESGAKE--LSEDIMLEALLKGHEAVKELIAFQEEIIA 222
>gi|227504840|ref|ZP_03934889.1| polynucleotide phosphorylase/polyadenylase [Corynebacterium
striatum ATCC 6940]
gi|227198531|gb|EEI78579.1| polynucleotide phosphorylase/polyadenylase [Corynebacterium
striatum ATCC 6940]
Length = 746
Score = 141 bits (356), Expect = 5e-32, Method: Composition-based stats.
Identities = 45/243 (18%), Positives = 87/243 (35%), Gaps = 14/243 (5%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKH 56
R+ GR +R++ + + A GS L + G+T +L TL+ E+ +
Sbjct: 361 FRIDGRGVTDIRDLGVEVDLIPRAHGSSLFERGETQILGVTTLDMLKMEQQIDSLTPVTG 420
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P STG + + R+ G RAL V+ I
Sbjct: 421 KRYMHHYNFPPYSTGETGRVGSPKRREIGHGAL----AERALLPVIPSREDFPYAIRQVS 476
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+ + ++G T ++ + ++L++ ++ + V + G + D
Sbjct: 477 EALGSNGSTSMGSVCASTLSLYNAGVPLKAPVAGIAMGLV-----SGEVDGKEKFVALTD 531
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED+ D+D T +I +Q + L A+D A ++ +
Sbjct: 532 ILGAEDAFGDMDFKVAGTSE-YITALQLDTKLDGIPSKVLAQALEQARDARATILDTMAE 590
Query: 237 VIS 239
VI
Sbjct: 591 VIE 593
Score = 72.2 bits (175), Expect = 6e-11, Method: Composition-based stats.
Identities = 39/240 (16%), Positives = 66/240 (27%), Gaps = 24/240 (10%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGD-THLLTTATLE----EKVPMWIRNTKHGWITAEYGM 65
R I +++ A GS + T LL+T T E + G
Sbjct: 32 RTIRFETGLLARQAGGSVTTYLDEDTMLLSTTTASNQPREGFDFFPLTVDVEERMYAAGK 91
Query: 66 LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125
+P S R GR + R+I R LR Q+++ + +
Sbjct: 92 IPGSFFRR------EGRPSTEAILACRLIDRPLRPTFVKGLRNEVQVVVTVLSMAPEEYY 145
Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185
AI GA + + +++ + + + +
Sbjct: 146 DVIAINGASASTQLSGLPVSGAVGGVRMALIAD-DKHPKGQWVAFPNHEQHERALFEMVV 204
Query: 186 DVDANFVMTDSG-HIVEVQGSA---------ERATFSQD-HFFAMLNLAKDRIADLIKLQ 234
I+ V+ A E A Q+ L AK I L + Q
Sbjct: 205 AGRIVKKGNKEDVAIMMVEAGAGTNVAERIKEGAPAPQESTVAEGLEAAKPFIKTLCEAQ 264
>gi|256425469|ref|YP_003126122.1| polyribonucleotide nucleotidyltransferase [Chitinophaga pinensis
DSM 2588]
gi|256040377|gb|ACU63921.1| Polyribonucleotide nucleotidyltransferase [Chitinophaga pinensis
DSM 2588]
Length = 793
Score = 141 bits (356), Expect = 6e-32, Method: Composition-based stats.
Identities = 45/238 (18%), Positives = 82/238 (34%), Gaps = 17/238 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIR----NTKH 56
+RL GR +Q+R +++ + GS L G+T LTT TL + +K+
Sbjct: 317 VRLDGRSLDQVRPLAMETDILPSPHGSALFTRGETQSLTTVTLGTPDDELLSESAATSKY 376
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P STG R+ G R + + + + +
Sbjct: 377 TKFILHYNFPPFSTGEVKPMRGPGRREVGHGNLAMRSLKQMMPGSEYA-----YTVRVVS 431
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
D+++++G + A + +AL D + + + + + + D
Sbjct: 432 DILESNGSSSMATVCAGSLALMDAGVPLPKHVSGVAMGLISRASDG-------KWAVLTD 484
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
+ ED D+D T G I +Q + S D L A+ +I
Sbjct: 485 ILGDEDHLGDMDFKVTGTRDG-ICGIQMDIKVDGLSMDVMRKALEQARSGRLHIIDAM 541
Score = 94.9 bits (234), Expect = 8e-18, Method: Composition-based stats.
Identities = 37/237 (15%), Positives = 86/237 (36%), Gaps = 28/237 (11%)
Query: 10 QMREISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPM----WIRNTKHGWITAEYG 64
R +++ +++ A+G+ V+ G+ LL T + + + A G
Sbjct: 14 DGRIVTIETGKLARQADGAVTVRLGNCILLATVVAAKTPKPGQSFFPLTVDYQEKFASAG 73
Query: 65 MLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGG 124
+P S R G+ I R+I RALR + Q
Sbjct: 74 RIPGSFFKR------EGKLSDYEVLISRLIDRALRPLFPDDYFCEVQ------------- 114
Query: 125 TRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDST 184
+ I+ + D L + + ++ ++ + + G +++ +
Sbjct: 115 VLVSLISSDPEVMPDALACLAASAALAVSDVPIQEIISEVRVSRIDGQLVINPNRTPLEK 174
Query: 185 IDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
D+D T+ +I+ V+G ++ S++ + +A + I +K Q++ + +
Sbjct: 175 ADMDFIIGATEK-NIMMVEGESKE--CSEEDIIKAIEVAHEAIRVQVKAQEE-LREK 227
>gi|282165297|ref|YP_003357682.1| putative exosome complex exonuclease 1 [Methanocella paludicola
SANAE]
gi|282157611|dbj|BAI62699.1| putative exosome complex exonuclease 1 [Methanocella paludicola
SANAE]
Length = 254
Score = 141 bits (356), Expect = 6e-32, Method: Composition-based stats.
Identities = 64/241 (26%), Positives = 101/241 (41%), Gaps = 22/241 (9%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKV-PMWIRNTKHGWIT 60
RL GR N++R I V K A+GSC ++FG ++ +V P ++N +
Sbjct: 13 RLDGRGPNELRPIKFKAGVLKRADGSCYLEFGGNKVMAAVYGPREVHPRHLQNASRAIVR 72
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
Y M S R + RS EI ++ AL SVV + I +++Q
Sbjct: 73 YRYNMAAFSVEERKRPG-----PDRRSIEISKVSREALESVVLEELYPRSAVDIFVEILQ 127
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
AD GTR A I A VAL D ++ V+A S G + G ++DL+
Sbjct: 128 ADAGTRVAGINAASVALADAGI-------------PMRCLVSACSVGKIDGEVVLDLNKD 174
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
ED+ D + G + Q +++ F L++A D L ++QK +
Sbjct: 175 EDNYGQADLPVAVNQFGEVTLCQMDGH---LTEEEFGKALDMAVDGCKKLHEMQKQALVE 231
Query: 241 E 241
+
Sbjct: 232 K 232
>gi|282881124|ref|ZP_06289811.1| polyribonucleotide nucleotidyltransferase [Prevotella timonensis
CRIS 5C-B1]
gi|281304928|gb|EFA97001.1| polyribonucleotide nucleotidyltransferase [Prevotella timonensis
CRIS 5C-B1]
Length = 766
Score = 141 bits (356), Expect = 6e-32, Method: Composition-based stats.
Identities = 45/243 (18%), Positives = 85/243 (34%), Gaps = 18/243 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHG 57
RL GR+ +++R I GS + G+T L+T T L+EK+ + + +
Sbjct: 315 RLDGRKTDEIRPIWCEVSPLPMPHGSAIFTRGETQSLSTCTLGTKLDEKMVDDVLDKSYQ 374
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P STG + V R+ G R L+ + + +
Sbjct: 375 RFLLHYNFPPFSTGEAKAQRGVGRREIGHGHL----AWRGLKGQIP--EDFPYTVRLVSQ 428
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+++++G + A + +AL D M+ + + + G + D+
Sbjct: 429 ILESNGSSSMATVCAGTLALMDAGVPMKKPVSGIAMGLIKN-------PGEDKYVILSDI 481
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T G + Q + S + L AK ++ +
Sbjct: 482 LGDEDHLGDMDFKTTGTRDG-LTATQMDIKCDGLSFEILEKALMQAKAGREHILGKMLET 540
Query: 238 ISN 240
+
Sbjct: 541 MPE 543
Score = 109 bits (271), Expect = 4e-22, Method: Composition-based stats.
Identities = 38/239 (15%), Positives = 76/239 (31%), Gaps = 25/239 (10%)
Query: 3 LSGRQENQMREISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
GR IS+ V+K A+GS +V+ G+T LL T +
Sbjct: 2 PDGRT------ISIETGKVAKQADGSAVVRLGNTVLLATVCAAKDAVPGTDFMPLQVDYR 55
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
E G+ R++ RALR + +
Sbjct: 56 EQYSAAGRFP--GGFTKREGKPSDNEILTSRLVDRALRPLFPSNYHAEVY---------- 103
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
+ ++ V D L + + +++ + + G +V+ + +
Sbjct: 104 ---VQIMLLSADGVDQPDALAGLAASAAMACSDIPFDFYISEVRVARINGEYVVNPTFEQ 160
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
+ D+D T +I+ V+ E S+ L A + I + +Q+++
Sbjct: 161 MKSADMDLMVGATKD-NIMMVE--GEMNEVSELDLIEALKAAHEAIKPMCTVQEELNKE 216
>gi|239620975|ref|ZP_04664006.1| polynucleotide nucleotidyl transferase [Bifidobacterium longum
subsp. infantis CCUG 52486]
gi|322689964|ref|YP_004209698.1| polynucleotide phosphorylase/polyadenylase [Bifidobacterium longum
subsp. infantis 157F]
gi|322691904|ref|YP_004221474.1| polynucleotide phosphorylase/polyadenylase [Bifidobacterium longum
subsp. longum JCM 1217]
gi|239516076|gb|EEQ55943.1| polynucleotide nucleotidyl transferase [Bifidobacterium longum
subsp. infantis CCUG 52486]
gi|320456760|dbj|BAJ67382.1| polynucleotide phosphorylase/polyadenylase [Bifidobacterium longum
subsp. longum JCM 1217]
gi|320461300|dbj|BAJ71920.1| polynucleotide phosphorylase/polyadenylase [Bifidobacterium longum
subsp. infantis 157F]
Length = 913
Score = 141 bits (356), Expect = 6e-32, Method: Composition-based stats.
Identities = 47/241 (19%), Positives = 86/241 (35%), Gaps = 14/241 (5%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +R +S + GS L + G+T +L TL E+ + +
Sbjct: 346 RIDGRGLRDIRTLSAEVDIVPRVHGSALFQRGETQILGVTTLNMLKMEQQIDALSGPQSK 405
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y M P STG + + R+ G +AL V+ I +
Sbjct: 406 RYMHNYEMPPYSTGETGRVGSPKRREIGHGAL----AEKALVPVLPSREEFPYAIRQVSE 461
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
I ++G T ++ + ++L ++ + V + G + D+
Sbjct: 462 AIGSNGSTSMGSVCASTLSLLAAGVPLKAPVAGIAMGLV-----SGDVDGKHIFKTLTDI 516
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED+ D+D T I +Q + D A L AK+ A ++++ +
Sbjct: 517 LGAEDAFGDMDFKVAGTSEF-ITALQLDTKLDGIPADILAAALQQAKEARATILEVINEC 575
Query: 238 I 238
I
Sbjct: 576 I 576
Score = 68.3 bits (165), Expect = 8e-10, Method: Composition-based stats.
Identities = 35/242 (14%), Positives = 70/242 (28%), Gaps = 32/242 (13%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGD-THLLTTATLE----EKVPMWIRNTKHGWITAEYGM 65
R + +++ A+G+ D + +L+T T E + G
Sbjct: 21 RTLRFETGRLAQQADGAVAAYLDDDSMILSTTTAGSSPKENYDFFPLTVDVEEKMYAAGK 80
Query: 66 LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125
+P S R GR + R+I R LR + + Q++ + D
Sbjct: 81 IPGSFFRR------EGRPSSEAILACRIIDRPLRPLFPHTLRNEVQVVETVLAVNPDDAY 134
Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185
A+ A + E + +L+ + VA + G
Sbjct: 135 DVIALNAASASTMISGLPFEGPVSGVRLALIDGQWVAFPRWSERERAVFEIVVAGR---- 190
Query: 186 DVDANFVMTDSGHIVEVQGSAERATFS-----------QDHFFAMLNLAKDRIADLIKLQ 234
+ I ++ A + + ++ L AK I + + Q
Sbjct: 191 -----VIENGDVAIAMIEAGAGKNAWHLIYDEGQTKPDEEVVAGGLEAAKPFIKVICEAQ 245
Query: 235 KD 236
+
Sbjct: 246 DE 247
>gi|326382957|ref|ZP_08204647.1| polynucleotide phosphorylase/polyadenylase [Gordonia neofelifaecis
NRRL B-59395]
gi|326198547|gb|EGD55731.1| polynucleotide phosphorylase/polyadenylase [Gordonia neofelifaecis
NRRL B-59395]
Length = 750
Score = 141 bits (356), Expect = 6e-32, Method: Composition-based stats.
Identities = 41/244 (16%), Positives = 81/244 (33%), Gaps = 10/244 (4%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKH 56
R+ GR +R +S + A GS L + G+T ++ TL+ + +
Sbjct: 350 FRIDGRGITDIRSLSAEVGIIPRAHGSALFERGETQIMGVTTLDMVKMAQQIDSLGPETS 409
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P STG + + R+ G RAL V+ I
Sbjct: 410 KRYMHHYNFPPYSTGETGRVGSPKRREIGHGAL----AERALVPVLPSVEEFPYAIRQVS 465
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+ + ++G T ++ + ++L + ++ + V V + D
Sbjct: 466 EALGSNGSTSMGSVCASTISLLNAGVPLKAPVAGIAMGLVSD-EVTIDGKTETRYVALTD 524
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED+ D+D T + +Q + L+ AK ++ + +
Sbjct: 525 ILGAEDAFGDMDFKVAGTKDF-VTALQLDTKLDGIPSKVLAGALSQAKQARLTILDVLAE 583
Query: 237 VISN 240
I
Sbjct: 584 AIDE 587
>gi|283782720|ref|YP_003373474.1| guanosine pentaphosphate synthetase I/polyribonucleotide
nucleotidyltransferase [Gardnerella vaginalis 409-05]
gi|298253113|ref|ZP_06976905.1| polyribonucleotide nucleotidyltransferase [Gardnerella vaginalis
5-1]
gi|283441010|gb|ADB13476.1| guanosine pentaphosphate synthetase I/polyribonucleotide
nucleotidyltransferase [Gardnerella vaginalis 409-05]
gi|297532508|gb|EFH71394.1| polyribonucleotide nucleotidyltransferase [Gardnerella vaginalis
5-1]
Length = 926
Score = 141 bits (356), Expect = 6e-32, Method: Composition-based stats.
Identities = 47/241 (19%), Positives = 85/241 (35%), Gaps = 14/241 (5%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +R +S V GS L + G+T +L TL E+ + +
Sbjct: 346 RIDGRGLRDIRTLSAEVDVVPRVHGSALFQRGETQILGVTTLNMLKMEQQVDALSGPQTK 405
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y M P STG + + R+ G +AL V+ I +
Sbjct: 406 RYMHNYEMPPYSTGETGRVGSPKRREIGHGAL----AEKALVPVLPGREEFPYAIRQVSE 461
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
I ++G T ++ + ++L ++ + V + G + D+
Sbjct: 462 AIGSNGSTSMGSVCASTLSLLAAGVPLKAPVAGIAMGLV-----SGDVDGKHIFKTLTDI 516
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED+ D+D T I +Q + D A L A + A ++++ +
Sbjct: 517 LGAEDAFGDMDFKVAGTSEF-ITALQLDTKLDGIPADILAAALQQAHEARATILEVINEC 575
Query: 238 I 238
I
Sbjct: 576 I 576
Score = 66.4 bits (160), Expect = 3e-09, Method: Composition-based stats.
Identities = 36/242 (14%), Positives = 68/242 (28%), Gaps = 32/242 (13%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGD-THLLTTATLE----EKVPMWIRNTKHGWITAEYGM 65
R + +++ A+G+ D + +L+T T E + G
Sbjct: 21 RTLRFETGRLAQQADGAVAAYLDDDSMILSTTTAGSSPKENYDFFPLTVDVEEKMYAAGK 80
Query: 66 LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125
+P S R GR + R+I R LR + + Q++ I D
Sbjct: 81 IPGSFFRR------EGRPSNEATLACRIIDRPLRPLFPHTLRNEVQVVETILAINPDDAY 134
Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185
A+ A + E + +L+ + VA + G
Sbjct: 135 DVIALNAASASTMISGLPFEGPVSGVRLALIDGQWVAFPRWSERERAVFEIVVAGR---- 190
Query: 186 DVDANFVMTDSGHIVEVQGSAERATF-----------SQDHFFAMLNLAKDRIADLIKLQ 234
+ I ++ A + + + L AK I + Q
Sbjct: 191 -----VIENGDVAIAMIEAGAGKNAWNLIYNDGQTKPDEQVVAGGLEAAKPFIKVICDAQ 245
Query: 235 KD 236
+
Sbjct: 246 NE 247
>gi|302528525|ref|ZP_07280867.1| polyribonucleotide nucleotidyltransferase [Streptomyces sp. AA4]
gi|302437420|gb|EFL09236.1| polyribonucleotide nucleotidyltransferase [Streptomyces sp. AA4]
Length = 749
Score = 141 bits (356), Expect = 6e-32, Method: Composition-based stats.
Identities = 47/242 (19%), Positives = 84/242 (34%), Gaps = 14/242 (5%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
+R+ GR +R++S V A GS L + G+T +L TL E+ +
Sbjct: 345 IRMDGRGLTDIRQLSAEVAVVPRAHGSALFERGETQILGITTLNMLRMEQQIDSLSPETT 404
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P STG + + R+ G RAL V+ I
Sbjct: 405 KRYLHHYNFPPFSTGETGRVGSPKRREIGHGML----AERALVPVLPKRDEFPYAIRQVS 460
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+ + ++G T ++ + + L + ++ + V G + D
Sbjct: 461 EALGSNGSTSMGSVCASTMGLLNAGVPLKAPVAGIAMGLVSDE-----VDGETRYVALTD 515
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED+ D+D T I +Q + + A L AKD ++ + +
Sbjct: 516 ILGAEDALGDMDFKVAGTKD-IITALQLDTKLDGIPSEVLAAALKQAKDARLTILDVIAE 574
Query: 237 VI 238
I
Sbjct: 575 AI 576
Score = 71.0 bits (172), Expect = 1e-10, Method: Composition-based stats.
Identities = 37/243 (15%), Positives = 65/243 (26%), Gaps = 38/243 (15%)
Query: 12 REISLTRR-VSKYAEGSCLVKFG-DTHLLTTATLE----EKVPMWIRNTKHGWITAEYGM 65
R + ++K A G+ + +T LL+ T E + G
Sbjct: 24 RTVRFETGRLAKQAAGAVVAYLDEETMLLSATTASKHPKEHFDFFPLTVDVEERMYAAGR 83
Query: 66 LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125
+P + R GR + R+I R LR Q++I + D
Sbjct: 84 IPGAFFRR------EGRPSTDAILTARLIDRPLRPSFADGLRNEIQVVITVQSLNPDDPY 137
Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185
AI A + G V + ++ + + +
Sbjct: 138 DVLAINAASASTQIAG-------------LPFSGPVGGVRVALIEDQWVAFPTWPQLEKA 184
Query: 186 DVDANFVM---TDSGHIVEVQGSAERATF----------SQDHFFAMLNLAKDRIADLIK 232
+ D I+ V+ T + L AK I L +
Sbjct: 185 TFNMVVAGRIVGDDVAIMMVEAEGTEHTLDLIAAGGKAPDEAAVAEGLEAAKPFIRVLCE 244
Query: 233 LQK 235
Q+
Sbjct: 245 AQQ 247
>gi|260400856|gb|ACX37015.1| polynucleotide phosphorylase/polyadenylase [Nonomuraea sp. ATCC
39727]
Length = 780
Score = 141 bits (356), Expect = 6e-32, Method: Composition-based stats.
Identities = 46/242 (19%), Positives = 86/242 (35%), Gaps = 17/242 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
+R+ GR +R +S V GS L + G+T +L TL E+V + +
Sbjct: 337 VRIDGRGTKDIRALSAEVHVVPRVHGSALFERGETQILGITTLNMLRMEQVIDTLNPERT 396
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P STG + + R+ G RAL V+ I
Sbjct: 397 KRYMHNYNFPPYSTGETGRVGSPKRREIGHGAL----AERALIPVLPTREEFPYAIRQVS 452
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+ + ++G T ++ + +AL D +++ + + +G ++ D
Sbjct: 453 EALGSNGSTSMGSVCASTMALLDAGVPLKEMVAGIAMGLIGEGDTHYVTLT--------D 504
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED+ D+D T I +Q + L AK ++ + ++
Sbjct: 505 ILGAEDAMGDMDFKVAGTKD-VITALQLDTKLDGIPASVLAGALKQAKGARLAILDVMQE 563
Query: 237 VI 238
I
Sbjct: 564 AI 565
Score = 79.9 bits (195), Expect = 3e-13, Method: Composition-based stats.
Identities = 39/243 (16%), Positives = 69/243 (28%), Gaps = 39/243 (16%)
Query: 12 REISLTRR-VSKYAEGSCLVKFG-DTHLLTTATLE----EKVPMWIRNTKHGWITAEYGM 65
R I +++ A GS + DT +L+ T E+ + G
Sbjct: 19 RTIRFETGRLARQAAGSAVAYLDSDTMVLSATTASKTPKEQFDFFPLTVDVEERMYAAGR 78
Query: 66 LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125
+P S R GR + R+I R LR Q++ + D
Sbjct: 79 IPGSFFRR------EGRPSEDAILTCRLIDRPLRPSFVKGLRNEIQVVATVMALNPDHLY 132
Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185
AI A ++ G + + ++ G + + E
Sbjct: 133 DVVAINAASLSTQLAG-------------LPFSGPIGGVRVALIDGQWVAFPTHPELERA 179
Query: 186 DVDANFVMT----DSGHIVEVQGSAERATF----------SQDHFFAMLNLAKDRIADLI 231
D I+ V+ + + T +++ L AK I L
Sbjct: 180 TFDMVVAGRVLDDGDVAIMMVEAESTKDTLKLVAEGAVAPTEETVAQGLEAAKPFIKVLC 239
Query: 232 KLQ 234
+ Q
Sbjct: 240 EAQ 242
>gi|33519583|ref|NP_878415.1| polynucleotide phosphorylase/polyadenylase [Candidatus Blochmannia
floridanus]
gi|81666682|sp|Q7VQM0|PNP_BLOFL RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|33517246|emb|CAD83629.1| polynucleotide phosphorylase, member of mRNA degradosome
[Candidatus Blochmannia floridanus]
Length = 697
Score = 141 bits (356), Expect = 6e-32, Method: Composition-based stats.
Identities = 46/239 (19%), Positives = 88/239 (36%), Gaps = 10/239 (4%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+R GR + +REI ++ + GS L GDT L TATL + + G
Sbjct: 316 VRFDGRSPDMIREIDISAGILPRTHGSALFTRGDTQALVTATLGTERDAQNLDELTGDRV 375
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
+ + + G R R+ R + +V+ S + + +V +
Sbjct: 376 DRFLLHYNFPPYCTGEIGIVGAPRRREIGHGRLAKRGMLAVMPNSNEFPYTVRVVSEVTE 435
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
++G + A+I GA +AL D +++ + + + I ++
Sbjct: 436 SNGSSSMASICGASLALMDAGVPIKESVAGVAMGLIKENSNFIILSDIIS---------D 486
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
ED D+D T +G I +Q + + D A+ + ++ + VI
Sbjct: 487 EDHIGDMDFKVSGTRTG-ITALQMDIKIKGITYDIIEVSFKKARCALLRILDIMDQVIK 544
Score = 88.7 bits (218), Expect = 5e-16, Method: Composition-based stats.
Identities = 38/232 (16%), Positives = 70/232 (30%), Gaps = 27/232 (11%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVP----MWIRNTKHGWITAEYGMLPR 68
+ L +++ A + +V GDT +L T + + + T G P
Sbjct: 16 VVLNTGAIARQANAAVMVSIGDTTVLVTVVSSNQEKIDQGFFPLVVHYQERTYAAGKFPG 75
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
R GR R+I R +R + L QII +
Sbjct: 76 GFFRR------EGRPSESEILTSRLIDRPIRPLFPKGFLNDIQIIATVVSVNPQIHPDIV 129
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+ G A G + A G + I++ E S +D
Sbjct: 130 AMIGVSAA-------------LSLSDIPFFGPIGAARVGYIKDQYILNPTTIELSNSKLD 176
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
T +I+ V+ +A S+ + ++ +I+ ++
Sbjct: 177 LVVAGT-DSNILMVESAA--CVLSEQEMLNAIVFGHEQQQTVIQNINQLVKK 225
>gi|308234186|ref|ZP_07664923.1| RNAse PH [Atopobium vaginae DSM 15829]
gi|328944441|ref|ZP_08241903.1| tRNA nucleotidyltransferase [Atopobium vaginae DSM 15829]
gi|327491025|gb|EGF22802.1| tRNA nucleotidyltransferase [Atopobium vaginae DSM 15829]
Length = 272
Score = 141 bits (356), Expect = 6e-32, Method: Composition-based stats.
Identities = 119/236 (50%), Positives = 153/236 (64%), Gaps = 4/236 (1%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R GR + R +L R+V KYA+GSCL+ GDT +L +AT+E+ +P W + + GW++A
Sbjct: 38 RSYGRSAFEARPCTLERQVMKYADGSCLITCGDTRVLCSATVEDTLPTWRKLSHLGWVSA 97
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
EY MLP S R RE + GRS EI+R+IGR+LRSVVD S LG I IDCDV+QA
Sbjct: 98 EYAMLPASAKRRTPREYKGRK--GRSMEIERLIGRSLRSVVDFSKLGEHTITIDCDVLQA 155
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
DGGTRTA+I GAWVALHD + M + L G VAAIS G++ G +VDLDY E
Sbjct: 156 DGGTRTASIVGAWVALHDACRKMVEAD--KIARCPLTGQVAAISMGIVHGELLVDLDYPE 213
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
DS DVD N VM D G +VE+QG+ ERAT S+ A+L+ ++ + L LQK V
Sbjct: 214 DSNADVDLNVVMRDDGGLVEIQGTGERATLSRHDLNALLDASEPALTKLFALQKSV 269
>gi|322374786|ref|ZP_08049300.1| polyribonucleotide nucleotidyltransferase [Streptococcus sp. C300]
gi|321280286|gb|EFX57325.1| polyribonucleotide nucleotidyltransferase [Streptococcus sp. C300]
Length = 737
Score = 141 bits (356), Expect = 6e-32, Method: Composition-based stats.
Identities = 42/244 (17%), Positives = 81/244 (33%), Gaps = 18/244 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56
+R GR+ +++R + GS L G T L+ T E ++ +
Sbjct: 317 VRPDGRKVDEIRPLDAVVDFLPRVHGSGLFTRGQTQALSVLTLAPMGETQIIDGLDPEYK 376
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y S G + A R+ G RAL V+ I +
Sbjct: 377 KRFMHHYNFPQYSVGETGRYGAPGRREIGHGALG----ERALAQVLPSLEEFPYAIRLVA 432
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V++++G + A+I +AL ++ + + + D
Sbjct: 433 EVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISD---------GNNYTVLTD 483
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T G I +Q + + + L AK +++ + ++
Sbjct: 484 IQGLEDHFGDMDFKVAGTREG-ITALQMDIKIQGITAEILTEALAQAKKARFEILDVIEE 542
Query: 237 VISN 240
I
Sbjct: 543 TIPE 546
Score = 112 bits (279), Expect = 5e-23, Method: Composition-based stats.
Identities = 42/232 (18%), Positives = 85/232 (36%), Gaps = 26/232 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKV---PMWIRNTKHGWITAEYGMLP 67
RE+ + V+K A GS +V++G++ +LT A + +K+ + + G P
Sbjct: 13 RELIVETGQVAKQANGSVVVRYGESTVLTAAVMSKKMATGDFFPLQVNYEEKMYAAGKFP 72
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R GR + R+I R +R + Q+I +
Sbjct: 73 GGFMKR------EGRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDENASAPM 126
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
AA+ G+ +A G +A + G + G I++ + +
Sbjct: 127 AAMFGSSLA-------------LSISDIPFDGPIAGVQVGYVDGQIIINPSQEQAERSLL 173
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
+ T I V+ A+ S++ L + + +LI Q+++++
Sbjct: 174 ELTVAGTKH-AINMVESGAKE--LSEEIMLEALLKGHEAVKELIAFQEEIVA 222
>gi|322390877|ref|ZP_08064385.1| polyribonucleotide nucleotidyltransferase [Streptococcus
parasanguinis ATCC 903]
gi|321142390|gb|EFX37860.1| polyribonucleotide nucleotidyltransferase [Streptococcus
parasanguinis ATCC 903]
Length = 740
Score = 141 bits (356), Expect = 6e-32, Method: Composition-based stats.
Identities = 42/244 (17%), Positives = 80/244 (32%), Gaps = 18/244 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56
+R GR+ +++R + GS L G T L+ T E ++ +
Sbjct: 317 VRPDGRKVDEIRPLDAQVDFLPRVHGSGLFTRGQTQALSILTLAPMGETQIIDGLDPEYK 376
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y S G + A R+ G RAL V+ I +
Sbjct: 377 KRFMHHYNFPQYSVGETGRYGAPGRREIGHGALG----ERALAQVLPSLEEFPYAIRLVA 432
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V++++G + A+I +AL ++ + + + D
Sbjct: 433 EVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISD---------GNNYTVLTD 483
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T G I +Q + + + L AK +++ + +
Sbjct: 484 IQGLEDHFGDMDFKVAGTRDG-ITALQMDIKIQGITAEILTEALAQAKKARFEILDVIEA 542
Query: 237 VISN 240
I
Sbjct: 543 TIPE 546
Score = 112 bits (279), Expect = 6e-23, Method: Composition-based stats.
Identities = 42/232 (18%), Positives = 85/232 (36%), Gaps = 26/232 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKV---PMWIRNTKHGWITAEYGMLP 67
RE+ + V+K A GS +V++G++ +LT A + +K+ + + G P
Sbjct: 13 RELIVETGQVAKQANGSVVVRYGESTVLTAAVMSKKMATGDFFPLQVNYEEKMYAAGKFP 72
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R GR + R+I R +R + Q+I +
Sbjct: 73 GGFMKR------EGRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDENASAPM 126
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
AA+ G+ +A G +A + G + G I++ + +
Sbjct: 127 AAMFGSSLA-------------LSISDIPFDGPIAGVQVGYVDGEIIINPTQEQAEQSLL 173
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
+ T I V+ A+ S++ L + + +LI Q+++++
Sbjct: 174 ELTVAGTKH-AINMVESGAKE--LSEEIMLEALLKGHEAVKELIAFQEEIVA 222
>gi|309790622|ref|ZP_07685176.1| Polyribonucleotide nucleotidyltransferase [Oscillochloris
trichoides DG6]
gi|308227350|gb|EFO81024.1| Polyribonucleotide nucleotidyltransferase [Oscillochloris
trichoides DG6]
Length = 763
Score = 141 bits (356), Expect = 6e-32, Method: Composition-based stats.
Identities = 46/244 (18%), Positives = 88/244 (36%), Gaps = 17/244 (6%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56
+R+ GR ++R IS+ V G+ L G T +LT T EE+ +
Sbjct: 329 IRVDGRATTEIRPISVDVGVIPRVHGTGLFHRGQTQVLTVTTLGSPGEEQRLDDLGIETS 388
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P STG + + R G R+L +V+ + +
Sbjct: 389 KRYIHHYNFPPFSTGEAKRMGSPRRRDIGHGAL----AERSLYAVLPTLEEFPYTMRLVS 444
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V+ ++G + A++ G+ ++L D ++ + + + D
Sbjct: 445 EVLSSNGSSSMASVCGSSLSLMDAGVPIKRPVAGVAMGLITDPD--------GRWTVLTD 496
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED+ D+D T G I +Q + + D A+D ++
Sbjct: 497 IQGLEDALGDMDFKVAGTSEG-ITGLQMDIKTTGITYDIMRQAFAQARDGRLFILDKMNA 555
Query: 237 VISN 240
VI++
Sbjct: 556 VINS 559
Score = 111 bits (276), Expect = 1e-22, Method: Composition-based stats.
Identities = 45/233 (19%), Positives = 76/233 (32%), Gaps = 27/233 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKHGWITAEYGML 66
R ++L ++ A+G+ V++GDT LL T E + + + G +
Sbjct: 25 RTLTLEAGRFAEQADGAVTVRYGDTVLLATVVAAKEPREGIDFFPLTVDYEERMYSAGKI 84
Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
P + R GR + R+ R LR + Q+II I
Sbjct: 85 PGNFFKR------EGRPTTTAILTSRLTDRPLRPLFPKGYYNEVQVIITTFSIDMVNDPG 138
Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
AI GA A KG V A+ L G + E
Sbjct: 139 PMAIIGASAA-------------LAISDIPFKGPVGAVQMTHLDGKVAANPPMSELERSR 185
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
+D T ++ V+ A ++D + L +LQ++++
Sbjct: 186 LDLVVAGTKD-AVLMVEAGAYE--LTEDEMLEAVMQGHAVCKQLCELQEELVR 235
>gi|34540549|ref|NP_905028.1| polynucleotide phosphorylase/polyadenylase [Porphyromonas
gingivalis W83]
gi|81417555|sp|Q7MW79|PNP_PORGI RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|34396862|gb|AAQ65927.1| polyribonucleotide nucleotidyltransferase [Porphyromonas gingivalis
W83]
Length = 743
Score = 141 bits (356), Expect = 6e-32, Method: Composition-based stats.
Identities = 49/240 (20%), Positives = 84/240 (35%), Gaps = 18/240 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
RL GR+ ++R I + GS + G+T LTT TL +EK+ + N
Sbjct: 318 RLDGRKTTEIRPIWIETDCLPGPHGSAIFTRGETQSLTTVTLGTKSDEKLVDDVLNYTKE 377
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P STG + V R+ G RAL+ ++ ++I D
Sbjct: 378 RFLLHYNFPPFSTGEARPQRGVGRREIGHGNL----AHRALKRMIPTDYPYVVRVISDIL 433
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+++G + A + +AL D + + + + + + D+
Sbjct: 434 --ESNGSSSMATVCAGTLALRDAGVQIRKPVSGIAMGLISE-------NQGKNYAILSDI 484
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T G I Q + S + L AK ++ +
Sbjct: 485 LGDEDHLGDMDFKVTGTKDG-ITATQMDIKVDGLSYEILENALEQAKQGRLHILGKIMEA 543
Score = 100 bits (248), Expect = 2e-19, Method: Composition-based stats.
Identities = 36/237 (15%), Positives = 69/237 (29%), Gaps = 20/237 (8%)
Query: 7 QENQMREISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGM 65
R I + ++K A+G+ V G+T LL T + E
Sbjct: 10 DLGDGRSIKIETGKLAKQADGAVTVTMGNTVLLATVCAAKDANPGCDFMPLQVEYKEKYS 69
Query: 66 LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125
G+ R++ RALR + +
Sbjct: 70 AIGRFP--GGFTRREGKASDYEILTCRLVDRALRPLFPDNYHAEVF-------------V 114
Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185
+ + D L + + G ++ + + G IV+ + +
Sbjct: 115 NVILFSADGEDMPDALAGLAASAALAVSDIPFNGPISEVRVARVDGRYIVNPTFEQLERA 174
Query: 186 DVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNEV 242
D+D T +I+ V+ E + + +A + I K Q + +S V
Sbjct: 175 DIDLMVGATMD-NIMMVE--GEMDEVQESEMLEGIRVAHEAIKVQCKAQLE-LSEAV 227
>gi|326803908|ref|YP_004321726.1| polyribonucleotide nucleotidyltransferase [Aerococcus urinae
ACS-120-V-Col10a]
gi|326651013|gb|AEA01196.1| polyribonucleotide nucleotidyltransferase [Aerococcus urinae
ACS-120-V-Col10a]
Length = 706
Score = 141 bits (356), Expect = 6e-32, Method: Composition-based stats.
Identities = 46/242 (19%), Positives = 87/242 (35%), Gaps = 15/242 (6%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
+R GR+ +++R +S + GS L G T +L+ TL E + I
Sbjct: 319 VRPDGRKIDEIRPLSSEVGLLPRVHGSGLFTRGQTQVLSACTLAPLSEYQPLDGISPETE 378
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y S G+ + + R+ G + RAL+ V+ I +
Sbjct: 379 RHFIHHYNFPQYSVGSTGRYGSPGRREIGHGELG----HRALQRVIPSQEEFPYTIRLVA 434
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V++++G + A+I +AL D ++ + ++ + D
Sbjct: 435 EVLESNGSSSQASICAGTLALMDAGVPIKAPVAGIAMGLIMDQEDN------NKYTILTD 488
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T G I +Q + ++D L AK L+ +
Sbjct: 489 IQGLEDHLGDMDFKVAGTRQG-ITALQMDIKIKGITEDILRESLAQAKVARMQLLDHLQG 547
Query: 237 VI 238
+
Sbjct: 548 TL 549
Score = 113 bits (282), Expect = 3e-23, Method: Composition-based stats.
Identities = 42/238 (17%), Positives = 82/238 (34%), Gaps = 30/238 (12%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----HGWITAEYGML 66
R + + ++K A + LV++GDT +LT ++ + G +
Sbjct: 14 RPLQIEVGQLAKQANAAALVRYGDTVVLTAVVGAKEAKEGQDFFPLTVNYEEKQYAAGKI 73
Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
P R GR + R+I R +R + Q+I + D
Sbjct: 74 PGGFIKR------EGRPTEHATLTARLIDRPIRPMFPEGFKNEVQVINTVMSVDNDCSPE 127
Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
AA+ G+ VA G +A ++ G + G +++ + + D
Sbjct: 128 MAAMLGSSVA-------------LTISDIPFDGPIAGVNVGRVDGNLVINPTLDQQAQSD 174
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI---KLQKDVISNE 241
++ T + I V+ SA+ S++ L I +L + + + E
Sbjct: 175 LELTVAGTQT-AINMVESSAQE--LSEEEMLEALMFGHANIKELCYFQEEIRQAVGQE 229
>gi|300813727|ref|ZP_07094047.1| polyribonucleotide nucleotidyltransferase [Peptoniphilus sp. oral
taxon 836 str. F0141]
gi|300512184|gb|EFK39364.1| polyribonucleotide nucleotidyltransferase [Peptoniphilus sp. oral
taxon 836 str. F0141]
Length = 722
Score = 141 bits (356), Expect = 6e-32, Method: Composition-based stats.
Identities = 47/241 (19%), Positives = 87/241 (36%), Gaps = 18/241 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R GR+ ++R +S + A GS L G T +L+ L EE+ + + K
Sbjct: 312 RPDGRKLEEIRHLSSEVGLLPRAHGSGLFTRGQTQVLSVTALGALSEEQTIDGLGDDKPK 371
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y S G+ + R+ G RAL V+ I + +
Sbjct: 372 HYIHHYNFPGFSVGDTKPSRSPGRREIGHGAL----AERALIPVIPSIEEFPYTIRVVSE 427
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
V+ ++G + A++ G+ ++L D ++ + + + V + D+
Sbjct: 428 VLSSNGSSSQASVCGSTLSLMDAGVPIKAPVAGIAMGLIEEHGV---------TKILTDI 478
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T G I +Q + ++ L AK +++ K
Sbjct: 479 QGLEDHFGDMDFKVAGTSEG-ITAIQMDIKVEGIKKEILEVALERAKVARLEILDHLKTT 537
Query: 238 I 238
I
Sbjct: 538 I 538
Score = 106 bits (264), Expect = 3e-21, Method: Composition-based stats.
Identities = 45/233 (19%), Positives = 87/233 (37%), Gaps = 27/233 (11%)
Query: 13 EISLTRR-VSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKHGWITAEYGMLP 67
E+ +T V++ A G CLV++GDT +L TAT E + + + + G +P
Sbjct: 13 ELKVTVGKVAEQANGECLVQYGDTVVLVTATSSKEPREGIDFFPLSVDYEEKMYAVGKIP 72
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R GR ++ R+I R LR + QI+ + D
Sbjct: 73 GGFIKR------EGRPSEKATLTARLIDRPLRPLFPEGYRNDVQIVATVLSVDQDHIPDI 126
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
A+ G+ +AL G ++ G++ G +++ + + D+
Sbjct: 127 PAMIGSSIALC-------------LSDIPFDGPTGSVQVGLVDGEYVINPNQEQREKTDI 173
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
+ T S I+ V+ A S++ + + I ++ ++S
Sbjct: 174 NLMLSGTSS-AIMMVEAGANI--VSEEQMLNAILTGHEAIKEICHFIDSIVSE 223
>gi|298373282|ref|ZP_06983271.1| polyribonucleotide nucleotidyltransferase [Bacteroidetes oral taxon
274 str. F0058]
gi|298274334|gb|EFI15886.1| polyribonucleotide nucleotidyltransferase [Bacteroidetes oral taxon
274 str. F0058]
Length = 741
Score = 141 bits (356), Expect = 6e-32, Method: Composition-based stats.
Identities = 50/243 (20%), Positives = 85/243 (34%), Gaps = 18/243 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHG 57
RL GR+ N++R I GS + G+T L+T T L+EK+ T
Sbjct: 319 RLDGRKTNEIRPIWSEVDYLPATHGSAIFTRGETQSLSTVTLGTKLDEKIIDEALITGTD 378
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P STG V R+ G RAL+ V+ I + D
Sbjct: 379 RFLLHYNFPPFSTGEARPSRGVGRREVGHGNL----ALRALKPVIP--ENYKYCIRVVSD 432
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+++++G + A + +AL D + + + + + + D+
Sbjct: 433 ILESNGSSSMATVCAGTLALMDAGVPISKPVSGIAMGLISE-------NKGKNYAVLSDI 485
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T G I Q + S + L A + ++ +
Sbjct: 486 LGDEDHLGDMDFKVTGTRDG-ITATQMDIKVDGLSYEILENALRQAHEGRMHILGKITET 544
Query: 238 ISN 240
I+
Sbjct: 545 IAE 547
Score = 99.1 bits (245), Expect = 5e-19, Method: Composition-based stats.
Identities = 37/237 (15%), Positives = 72/237 (30%), Gaps = 33/237 (13%)
Query: 3 LSGRQENQMREISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT----KHG 57
GR EI + ++K A+G+ +V G T LL T ++ +
Sbjct: 11 PDGR------EIIIETGKLAKQADGAVMVTLGKTMLLATVCSAQEANPGTDFMPLSVDYK 64
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
+ G P R GR I R++ RALR + + +
Sbjct: 65 EKFSACGRFPGGFLRR------EGRPSDYEILISRLVDRALRPLFPDDYHAETFVNVTLY 118
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
L + + G ++ + + G +++
Sbjct: 119 SADGVDAPDA-------------LAGLAASAALAVSDIPFGGPISEVRVARIDGEFVINP 165
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
+ D++ T +I+ V+ E S+D + A + I ++Q
Sbjct: 166 TMEQLQNADLELIVAAT-LDNIMMVE--GEMKEVSEDVLLNAIKAAHEAIKPQCQVQ 219
>gi|118471281|ref|YP_886993.1| polynucleotide phosphorylase/polyadenylase [Mycobacterium smegmatis
str. MC2 155]
gi|187610287|sp|A0QVQ5|PNP_MYCS2 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|118172568|gb|ABK73464.1| guanosine pentaphosphate synthetase I/polyribonucleotide
nucleotidyltransferase [Mycobacterium smegmatis str. MC2
155]
Length = 763
Score = 141 bits (356), Expect = 6e-32, Method: Composition-based stats.
Identities = 44/242 (18%), Positives = 80/242 (33%), Gaps = 10/242 (4%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKH 56
R+ GR +R +S V A GS L + G+T +L TL+ + +
Sbjct: 346 FRIDGRGITDIRALSAEVAVIPRAHGSALFERGETQILGVTTLDMIKMAQQIDSLGPENT 405
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P STG + + R+ G RAL V+ I
Sbjct: 406 KRYMHHYNFPPYSTGETGRVGSPKRREIGHGAL----AERALVPVLPSIEEFPYAIRQVS 461
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+ + ++G T ++ + +AL + ++ + V D
Sbjct: 462 EALGSNGSTSMGSVCASTLALLNAGVPLKAPVAGIAMGLVSDDVDVDGKVEKRYVAL-TD 520
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED+ D+D T + +Q + L+ AKD ++ + +
Sbjct: 521 ILGAEDAFGDMDFKVAGTKDF-VTALQLDTKLDGIPSQVLAGALSQAKDARLTILDVMAE 579
Query: 237 VI 238
I
Sbjct: 580 AI 581
Score = 76.0 bits (185), Expect = 4e-12, Method: Composition-based stats.
Identities = 38/236 (16%), Positives = 69/236 (29%), Gaps = 18/236 (7%)
Query: 12 REISLTRR-VSKYAEGSCLVKF-GDTHLLTTATLEEKVPMWIRNT----KHGWITAEYGM 65
R I +++ A GS + +T LL+ T + G
Sbjct: 25 RTIRFETGRLAQQAAGSAVAYLDDETMLLSATTASKNPKDHFDFFPLTVDVEERMYAAGR 84
Query: 66 LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125
+P S R GR + R+I R LR Q+++ +
Sbjct: 85 IPGSFFRR------EGRPSTDAILTCRLIDRPLRPSFVDGLRNEIQVVVTVMSLDPKDLY 138
Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD-----LDYG 180
AI A ++ +++ + VA + L +
Sbjct: 139 DVLAINAASMSTQLAGLPFSGPVGGARIALIDGTWVAFPTVEQLERAVFDMVVAGRIVGD 198
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
DS + ++VE+ +A ++ L AK I L Q++
Sbjct: 199 GDSADVAIMMVEAEATENVVELVAGGAQAP-TEAVVAEGLEAAKPFIKALCAAQQE 253
>gi|15902560|ref|NP_358110.1| polynucleotide phosphorylase/polyadenylase [Streptococcus
pneumoniae R6]
gi|116515732|ref|YP_816014.1| polynucleotide phosphorylase/polyadenylase [Streptococcus
pneumoniae D39]
gi|15458089|gb|AAK99320.1| Polyribonucleotide nucleotidyltransferase [Streptococcus pneumoniae
R6]
gi|116076308|gb|ABJ54028.1| polyribonucleotide nucleotidyltransferase [Streptococcus pneumoniae
D39]
Length = 775
Score = 141 bits (356), Expect = 7e-32, Method: Composition-based stats.
Identities = 42/244 (17%), Positives = 80/244 (32%), Gaps = 18/244 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56
+R GR+ +++R + GS L G T L+ T E ++ +
Sbjct: 355 VRPDGRKVDEIRPLDAVVDFLPRVHGSGLFTRGQTQALSVLTLAPMGETQIIDGLDPEYK 414
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y S G + A R+ G RAL V+ I +
Sbjct: 415 KRFMHHYNFPQYSVGETGRYGAPGRREIGHGALG----ERALAQVLPSLEEFPYAIRLVA 470
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V++++G + A+I +AL ++ + + + D
Sbjct: 471 EVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISD---------GNNYTVLTD 521
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T G I +Q + + + L AK +++ + +
Sbjct: 522 IQGLEDHFGDMDFKVAGTRDG-ITALQMDIKIQGITAEILTEALAQAKKARFEILDVIEA 580
Query: 237 VISN 240
I
Sbjct: 581 TIPE 584
Score = 113 bits (282), Expect = 3e-23, Method: Composition-based stats.
Identities = 42/232 (18%), Positives = 85/232 (36%), Gaps = 26/232 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKV---PMWIRNTKHGWITAEYGMLP 67
RE+ + V+K A GS +V++G++ +LT A + +K+ + + G P
Sbjct: 51 RELIVETGQVAKQANGSVVVRYGESTVLTAAVMSKKMATGDFFPLQVNYEEKMYAAGKFP 110
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R GR + R+I R +R + Q+I +
Sbjct: 111 GGFMKR------EGRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDENASAPM 164
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
AA+ G+ +A G +A + G + G I++ + +
Sbjct: 165 AAMFGSSLA-------------LSISDIPFDGPIAGVQVGYVDGQIIINPSQEQAEQSLL 211
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
+ T I V+ A+ S++ L + + +LI Q+++++
Sbjct: 212 ELTVAGTKH-AINMVESGAKE--LSEEIMLEALLKGHEAVKELIAFQEEIVA 260
>gi|324992451|gb|EGC24372.1| polyribonucleotide nucleotidyltransferase [Streptococcus sanguinis
SK405]
gi|327462786|gb|EGF09108.1| polyribonucleotide nucleotidyltransferase [Streptococcus sanguinis
SK1057]
Length = 733
Score = 141 bits (356), Expect = 7e-32, Method: Composition-based stats.
Identities = 42/238 (17%), Positives = 78/238 (32%), Gaps = 18/238 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56
+R GR+ +++R + GS L G T L+ T E ++ +
Sbjct: 317 VRPDGRKVDEIRPLDAEVDYLPRVHGSGLFTRGQTQALSVLTLAPMGETQIVDGLDPEYK 376
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y S G + A R+ G RAL V+ I +
Sbjct: 377 KRFMHHYNFPQYSVGETGRYGAPGRREIGHGALG----ERALEQVLPSLEEFPYAIRLVA 432
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V++++G + A+I +AL ++ + + + D
Sbjct: 433 EVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISD---------GSNYTVLTD 483
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
+ ED D+D T G I +Q + + + L AK +++ L
Sbjct: 484 IQGLEDHFGDMDFKVAGTREG-ITALQMDIKIEGITAEILTEALAQAKKARFEILDLI 540
Score = 115 bits (287), Expect = 5e-24, Method: Composition-based stats.
Identities = 45/231 (19%), Positives = 85/231 (36%), Gaps = 26/231 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKV---PMWIRNTKHGWITAEYGMLP 67
RE+ + V+K A GS +V++G++ +LT AT+ +K+ + + G P
Sbjct: 13 RELVVETGQVAKQANGSAVVRYGESTVLTAATMSKKMATGDFFPLQVNYEEKMYAAGKYP 72
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R GR + R+I R +R + Q+I D +
Sbjct: 73 GGFNKR------EGRPSMDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDEDASPQM 126
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
AA+ G+ +A G +A + G + G I++ + +
Sbjct: 127 AAMFGSSLA-------------LSISDIPFNGPIAGVQVGYVDGEFIINPSKEQKEVSLL 173
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
+ T I V+ A+ S+D L + +LI Q++++
Sbjct: 174 ELTVAGTKD-AINMVESGAKE--LSEDIMLEALLKGHQAVKELIAFQEEIV 221
>gi|242065778|ref|XP_002454178.1| hypothetical protein SORBIDRAFT_04g026110 [Sorghum bicolor]
gi|241934009|gb|EES07154.1| hypothetical protein SORBIDRAFT_04g026110 [Sorghum bicolor]
Length = 983
Score = 141 bits (356), Expect = 7e-32, Method: Composition-based stats.
Identities = 51/243 (20%), Positives = 90/243 (37%), Gaps = 11/243 (4%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56
+R+ GRQ +++R + GS L GDT +L T T + + I
Sbjct: 379 LRVDGRQLDEVRPLYCESNTYPVLHGSALFSRGDTQVLCTVTLGAPGDAQRLDSIVGPPT 438
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P S KR ++ R+ G +AL +V+ + + ++
Sbjct: 439 KRFMLHYSFPPFSINEVAKRGGLNRREVGHGTL----AEKALLAVLPPESDFPYAVRVNS 494
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V+ +DG T A++ G +AL D + + + V + A + + + D
Sbjct: 495 EVMASDGSTSMASVCGGSMALMDAGIPVREHVAGVSVGLVSQVDPA--TGDISNYRILTD 552
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T G I +Q + A D L A+ ++
Sbjct: 553 ILGLEDHLGDMDFKIAGTRKG-ITAIQLDIKPAGIPLDIICESLEPARKARNQILDRMDQ 611
Query: 237 VIS 239
IS
Sbjct: 612 EIS 614
Score = 83.4 bits (204), Expect = 2e-14, Method: Composition-based stats.
Identities = 36/232 (15%), Positives = 73/232 (31%), Gaps = 21/232 (9%)
Query: 6 RQENQM--REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAE 62
R+E ++ R I+ ++++A GS ++ DTH+L+T + E
Sbjct: 69 REEFEIGGRSIAFETGKMARFANGSVVISMEDTHVLSTVAAAKSSEPVRDFLPLTVDYQE 128
Query: 63 YGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQAD 122
R + ++ R+I R +R + QI+++
Sbjct: 129 KQYAQGVIPTTYMRREGAPKEREL--LCGRIIDRPIRPLFPPGFYHEVQIMVNVLSSDGK 186
Query: 123 GGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGED 182
A + AL G + I G + G I++ E
Sbjct: 187 QDPDVMAANASSAALM-------------LSDIPWNGPIGVIRVGRIDGNFILNPTVDEL 233
Query: 183 STIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
+ D++ + + + + A ++ A + LA I Q
Sbjct: 234 GSSDLNLIYACSRDKTL-MIDVQARE--ITERDLQAGMKLAHSEAIKCIDPQ 282
>gi|57234211|ref|YP_181693.1| polynucleotide phosphorylase/polyadenylase [Dehalococcoides
ethenogenes 195]
gi|123759700|sp|Q3Z7V6|PNP_DEHE1 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|57224659|gb|AAW39716.1| polyribonucleotide nucleotidyltransferase [Dehalococcoides
ethenogenes 195]
Length = 720
Score = 141 bits (356), Expect = 7e-32, Method: Composition-based stats.
Identities = 46/244 (18%), Positives = 88/244 (36%), Gaps = 17/244 (6%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
+R++GR Q+R++ + GS L GDT ++ TL E + +
Sbjct: 311 IRVNGRGIKQLRQLDAETGILPRVHGSALFTRGDTQVMAITTLGSLQEAQQLDGLSAEDT 370
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P STG + + R+ G RAL V+ I +
Sbjct: 371 KRFMLHYNFAPFSTGEVKRSGSPGRREIGHGAL----AERALVPVLPTPEEFPYTIRMVA 426
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
DV+ + G T ++ + ++L D ++ + + + I D
Sbjct: 427 DVVGSSGSTSMGSVCSSSLSLMDAGVPVKKAVAGISIGLI--------TGENDTYCTITD 478
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
++ ED+ D+D T G I +Q + S D + AK+ ++++
Sbjct: 479 IEGIEDNYGDMDFKVAGTRDG-ITAIQVDMKVKGISFDVIRDAIYQAKEARYTILEVMDK 537
Query: 237 VISN 240
++
Sbjct: 538 ALAQ 541
Score = 95.7 bits (236), Expect = 5e-18, Method: Composition-based stats.
Identities = 38/231 (16%), Positives = 77/231 (33%), Gaps = 27/231 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKHGWITAEYGML 66
R++++ +++ A+ + +++ DT LL T E V + G +
Sbjct: 14 RKLTIESGKMARLADAAVTIRYADTELLVTLCAAKKPREGVDFLPLTIDYEERMYAAGKI 73
Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
P R GR ++ R+ R LR ++ QIII +
Sbjct: 74 PGGFIRR------EGRPSEQAILAGRLTDRPLRPLLPKEWRNELQIIITVIASDKENDAD 127
Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
+ G + +G V A G G +++ + +
Sbjct: 128 IWGVVG-------------ASTVLTMSQIPYEGPVGASRVGYTNGEFVLNPTFAQLEQSQ 174
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
+D V T +V ++ ++ +D + A +LI LQ ++
Sbjct: 175 MDLVVVSTRK-AVVMIEAGSKE--IPEDLMIKAIEFAHQANQELIDLQDEI 222
>gi|116627040|ref|YP_819659.1| polynucleotide phosphorylase/polyadenylase [Streptococcus
thermophilus LMD-9]
gi|122268357|sp|Q03MV9|PNP_STRTD RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|116100317|gb|ABJ65463.1| Polyribonucleotide nucleotidyltransferase (polynucleotide
phosphorylase) [Streptococcus thermophilus LMD-9]
Length = 741
Score = 141 bits (356), Expect = 7e-32, Method: Composition-based stats.
Identities = 42/244 (17%), Positives = 82/244 (33%), Gaps = 18/244 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
+R GR+ +++R + GS L G T L+ TL + ++ +
Sbjct: 317 VRPDGRRVDEIRPLDAEIDFLPKVHGSGLFTRGQTQALSVLTLAPMSDTQLVDGLDPEYK 376
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y S G + A R+ G RAL V+ I +
Sbjct: 377 KRFLHHYNFPQYSVGKTGRYGAPGRREIGHGVLG----ERALAQVLPSVEEFPYAIRLVA 432
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V++++G + A+I +AL ++ + + + D
Sbjct: 433 EVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISD---------GTNYTVLTD 483
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T G I +Q + + + L AK +++ + +
Sbjct: 484 IQGLEDHFGDMDFKVAGTRLG-ITALQMDIKISGITPAILEEALAQAKVARFEILDVIES 542
Query: 237 VISN 240
I+
Sbjct: 543 AIAE 546
Score = 108 bits (270), Expect = 5e-22, Method: Composition-based stats.
Identities = 41/230 (17%), Positives = 77/230 (33%), Gaps = 26/230 (11%)
Query: 10 QMREISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKV---PMWIRNTKHGWITAEYGM 65
+ R + + V+K A G+ +V++GDT +L+ A + +K+ + + G
Sbjct: 11 EGRPLVVEVGQVAKQANGAVVVRYGDTTVLSVAVMSKKMATADFFPLQVNYEEKMYAAGK 70
Query: 66 LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125
P R GR + R+I R +R + Q+I +
Sbjct: 71 FPGGFSKR------EGRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDENASA 124
Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185
AA+ G+ +A G +A + I++ +
Sbjct: 125 PMAAMFGSSLA-------------LSISDIPFNGPIAGVQVAYAAEDFIINPSASDKEVS 171
Query: 186 DVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
+D T I V+ A+ S+D L + I +L+ Q
Sbjct: 172 HLDLIVAGTKE-AINMVEAGAQE--LSEDIMLQALLKGHEAIQELVDFQN 218
>gi|296454907|ref|YP_003662051.1| polyribonucleotide nucleotidyltransferase [Bifidobacterium longum
subsp. longum JDM301]
gi|296184339|gb|ADH01221.1| Polyribonucleotide nucleotidyltransferase [Bifidobacterium longum
subsp. longum JDM301]
Length = 914
Score = 141 bits (356), Expect = 7e-32, Method: Composition-based stats.
Identities = 47/241 (19%), Positives = 86/241 (35%), Gaps = 14/241 (5%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +R +S + GS L + G+T +L TL E+ + +
Sbjct: 346 RIDGRGLRDIRTLSAEVDIVPRVHGSALFQRGETQILGVTTLNMLKMEQQIDALSGPQSK 405
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y M P STG + + R+ G +AL V+ I +
Sbjct: 406 RYMHNYEMPPYSTGETGRVGSPKRREIGHGAL----AEKALVPVLPSREEFPYAIRQVSE 461
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
I ++G T ++ + ++L ++ + V + G + D+
Sbjct: 462 AIGSNGSTSMGSVCASTLSLLAAGVPLKAPVAGIAMGLV-----SGDVDGKHIFKTLTDI 516
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED+ D+D T I +Q + D A L AK+ A ++++ +
Sbjct: 517 LGAEDAFGDMDFKVAGTSEF-ITALQLDTKLDGIPADILAAALQQAKEARATILEVINEC 575
Query: 238 I 238
I
Sbjct: 576 I 576
Score = 68.3 bits (165), Expect = 9e-10, Method: Composition-based stats.
Identities = 35/242 (14%), Positives = 70/242 (28%), Gaps = 32/242 (13%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGD-THLLTTATLE----EKVPMWIRNTKHGWITAEYGM 65
R + +++ A+G+ D + +L+T T E + G
Sbjct: 21 RTLRFETGRLAQQADGAVAAYLDDDSMILSTTTAGSSPKENYDFFPLTVDVEEKMYAAGK 80
Query: 66 LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125
+P S R GR + R+I R LR + + Q++ + D
Sbjct: 81 IPGSFFRR------EGRPSSEAILACRIIDRPLRPLFPHTLRNEVQVVETVLAVNPDDAY 134
Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185
A+ A + E + +L+ + VA + G
Sbjct: 135 DVIALNAASASTMISGLPFEGPVSGVRLALIDGQWVAFPRWSERERAVFEIVVAGR---- 190
Query: 186 DVDANFVMTDSGHIVEVQGSAERATFS-----------QDHFFAMLNLAKDRIADLIKLQ 234
+ I ++ A + + ++ L AK I + + Q
Sbjct: 191 -----VIENGDVAIAMIEAGAGKNAWHLIYDEGQTKPDEEVVAGGLEAAKPFIKVICEAQ 245
Query: 235 KD 236
+
Sbjct: 246 DE 247
>gi|317483033|ref|ZP_07942035.1| guanosine pentaphosphate synthetase I/polyribonucleotide
nucleotidyltransferase [Bifidobacterium sp. 12_1_47BFAA]
gi|316915534|gb|EFV36954.1| guanosine pentaphosphate synthetase I/polyribonucleotide
nucleotidyltransferase [Bifidobacterium sp. 12_1_47BFAA]
Length = 913
Score = 141 bits (356), Expect = 7e-32, Method: Composition-based stats.
Identities = 47/241 (19%), Positives = 86/241 (35%), Gaps = 14/241 (5%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +R +S + GS L + G+T +L TL E+ + +
Sbjct: 346 RIDGRGLRDIRTLSAEVDIVPRVHGSALFQRGETQILGVTTLNMLKMEQQIDALSGPQSK 405
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y M P STG + + R+ G +AL V+ I +
Sbjct: 406 RYMHNYEMPPYSTGETGRVGSPKRREIGHGAL----AEKALVPVLPSREEFPYAIRQVSE 461
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
I ++G T ++ + ++L ++ + V + G + D+
Sbjct: 462 AIGSNGSTSMGSVCASTLSLLAAGVPLKAPVAGIAMGLV-----SGDVDGKHIFKTLTDI 516
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED+ D+D T I +Q + D A L AK+ A ++++ +
Sbjct: 517 LGAEDAFGDMDFKVAGTSEF-ITALQLDTKLDGIPADILAAALQQAKEARATILEVINEC 575
Query: 238 I 238
I
Sbjct: 576 I 576
Score = 68.3 bits (165), Expect = 9e-10, Method: Composition-based stats.
Identities = 35/242 (14%), Positives = 70/242 (28%), Gaps = 32/242 (13%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGD-THLLTTATLE----EKVPMWIRNTKHGWITAEYGM 65
R + +++ A+G+ D + +L+T T E + G
Sbjct: 21 RTLRFETGRLAQQADGAVAAYLDDDSMILSTTTAGSSPKENYDFFPLTVDVEEKMYAAGK 80
Query: 66 LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125
+P S R GR + R+I R LR + + Q++ + D
Sbjct: 81 IPGSFFRR------EGRPSSEAILACRIIDRPLRPLFPHTLRNEVQVVETVLAVNPDDAY 134
Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185
A+ A + E + +L+ + VA + G
Sbjct: 135 DVIALNAASASTMISGLPFEGPVSGVRLALIDGQWVAFPRWSERERAVFEIVVAGR---- 190
Query: 186 DVDANFVMTDSGHIVEVQGSAERATFS-----------QDHFFAMLNLAKDRIADLIKLQ 234
+ I ++ A + + ++ L AK I + + Q
Sbjct: 191 -----VIENGDVAIAMIEAGAGKNAWHLIYDEGQTKPDEEVVAGGLEAAKPFIKVICEAQ 245
Query: 235 KD 236
+
Sbjct: 246 DE 247
>gi|257096721|sp|B2RIW6|PNP_PORG3 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
Length = 743
Score = 141 bits (356), Expect = 7e-32, Method: Composition-based stats.
Identities = 49/240 (20%), Positives = 84/240 (35%), Gaps = 18/240 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
RL GR+ ++R I + GS + G+T LTT TL +EK+ + N
Sbjct: 318 RLDGRKATEIRPIWIETDCLPGPHGSAIFTRGETQSLTTVTLGTKSDEKLVDDVLNYTKE 377
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P STG + V R+ G RAL+ ++ ++I D
Sbjct: 378 RFLLHYNFPPFSTGEARPQRGVGRREIGHGNL----AHRALKRMIPTDYPYVVRVISDIL 433
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+++G + A + +AL D + + + + + + D+
Sbjct: 434 --ESNGSSSMATVCAGTLALRDAGVQIRKPVSGIAMGLISE-------NQGKNYAILSDI 484
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T G I Q + S + L AK ++ +
Sbjct: 485 LGDEDHLGDMDFKVTGTKDG-ITATQMDIKVDGLSYEILENALEQAKQGRLHILGKIMEA 543
Score = 100 bits (248), Expect = 2e-19, Method: Composition-based stats.
Identities = 36/237 (15%), Positives = 69/237 (29%), Gaps = 20/237 (8%)
Query: 7 QENQMREISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGM 65
R I + ++K A+G+ V G+T LL T + E
Sbjct: 10 DLGDGRSIKIETGKLAKQADGAVTVTMGNTVLLATVCAAKDANPGCDFMPLQVEYKEKYS 69
Query: 66 LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125
G+ R++ RALR + +
Sbjct: 70 AIGRFP--GGFTRREGKASDYEILTCRLVDRALRPLFPDNYHAEVF-------------V 114
Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185
+ + D L + + G ++ + + G IV+ + +
Sbjct: 115 NVILFSADGEDMPDALAGLAASAALAVSDIPFNGPISEVRVARVDGRYIVNPTFEQLERA 174
Query: 186 DVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNEV 242
D+D T +I+ V+ E + + +A + I K Q + +S V
Sbjct: 175 DIDLMVGATMD-NIMMVE--GEMDEVQESEMLEGIRVAHEAIKVQCKAQLE-LSEAV 227
>gi|149924421|ref|ZP_01912786.1| ribonuclease PH [Plesiocystis pacifica SIR-1]
gi|149814728|gb|EDM74302.1| ribonuclease PH [Plesiocystis pacifica SIR-1]
Length = 248
Score = 141 bits (356), Expect = 7e-32, Method: Composition-based stats.
Identities = 92/250 (36%), Positives = 134/250 (53%), Gaps = 15/250 (6%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR GR +Q+R ++LT + A+GS L+ G T +L TA++E + P W+ + GW+T
Sbjct: 1 MRFDGRSNDQLRPLTLTPGFTSAADGSVLIATGGTRVLCTASVESRTPSWL--SSGGWVT 58
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEY MLP +T R R +GR + I R + A+ + G I+ DCDVI+
Sbjct: 59 AEYAMLPGATRPRGGR-KANGRAKEIQRLIGRSLRAAVDLSKLVGPDGGVSIVCDCDVIE 117
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC-----GYPIV 175
ADGGTRTAAITGAWVAL L+ + VAA+S G++ ++
Sbjct: 118 ADGGTRTAAITGAWVALELALRRLVAG--GKLSEHPGIAPVAAVSVGVIPVEGSEPEVML 175
Query: 176 DLDYGEDSTIDVDANFVMTDSGH-----IVEVQGSAERATFSQDHFFAMLNLAKDRIADL 230
DL Y EDS VD N VM + +VE+QG+ E+ FS++ ML+LA+ I +L
Sbjct: 176 DLPYSEDSRAIVDLNVVMRRAPEGGTPRLVEIQGTGEQGDFSREQLNRMLDLAEGGITNL 235
Query: 231 IKLQKDVISN 240
+ Q+ +
Sbjct: 236 LAGQQAALRE 245
>gi|148992301|ref|ZP_01822024.1| polyribonucleotide nucleotidyltransferase [Streptococcus pneumoniae
SP9-BS68]
gi|149010792|ref|ZP_01832163.1| polyribonucleotide nucleotidyltransferase [Streptococcus pneumoniae
SP19-BS75]
gi|147765273|gb|EDK72202.1| polyribonucleotide nucleotidyltransferase [Streptococcus pneumoniae
SP19-BS75]
gi|147928927|gb|EDK79939.1| polyribonucleotide nucleotidyltransferase [Streptococcus pneumoniae
SP9-BS68]
Length = 775
Score = 141 bits (356), Expect = 7e-32, Method: Composition-based stats.
Identities = 42/244 (17%), Positives = 80/244 (32%), Gaps = 18/244 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56
+R GR+ +++R + GS L G T L+ T E ++ +
Sbjct: 355 VRPDGRKVDEIRPLDAVVDFLPRVHGSGLFTRGQTQALSVLTLAPMGETQIIDGLDPEYK 414
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y S G + A R+ G RAL V+ I +
Sbjct: 415 KRFMHHYNFPQYSVGETGRYGAPGRREIGHGALG----ERALAQVLPSLEEFPYAIRLVA 470
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V++++G + A+I +AL ++ + + + D
Sbjct: 471 EVLESNGSSSQASICAGTLALMTGGVPIKAPVAGIAMGLISD---------GNNYTVLTD 521
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T G I +Q + + + L AK +++ + +
Sbjct: 522 IQGLEDHFGDMDFKVAGTRDG-ITALQMDIKIQGITAEILTEALAQAKKARFEILDVIEA 580
Query: 237 VISN 240
I
Sbjct: 581 TIPE 584
Score = 113 bits (281), Expect = 3e-23, Method: Composition-based stats.
Identities = 42/232 (18%), Positives = 85/232 (36%), Gaps = 26/232 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKV---PMWIRNTKHGWITAEYGMLP 67
RE+ + V+K A GS +V++G++ +LT A + +K+ + + G P
Sbjct: 51 RELIVETGQVAKQANGSVVVRYGESTVLTAAVMSKKMATGDFFPLQVNYEEKMYAAGKFP 110
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R GR + R+I R +R + Q+I +
Sbjct: 111 GGFMKR------EGRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDENASAPM 164
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
AA+ G+ +A G +A + G + G I++ + +
Sbjct: 165 AAMFGSSLA-------------LSISDIPFDGPIAGVQVGYVDGQIIINPSQEQAEQSLL 211
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
+ T I V+ A+ S++ L + + +LI Q+++++
Sbjct: 212 ELTVAGTKH-AINMVESGAKE--LSEEIMLEALLKGHEAVKELIAFQEEIVA 260
>gi|111657667|ref|ZP_01408397.1| hypothetical protein SpneT_02001144 [Streptococcus pneumoniae
TIGR4]
Length = 775
Score = 141 bits (355), Expect = 7e-32, Method: Composition-based stats.
Identities = 42/244 (17%), Positives = 80/244 (32%), Gaps = 18/244 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56
+R GR+ +++R + GS L G T L+ T E ++ +
Sbjct: 355 VRPDGRKVDEIRPLDAVVDFLPRVHGSGLFTRGQTQALSVLTLAPMGETQIIDGLDPEYK 414
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y S G + A R+ G RAL V+ I +
Sbjct: 415 KRFMHHYNFPQYSVGETGRYGAPGRREIGHGALG----ERALAQVLPSLEEFPYAIRLVA 470
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V++++G + A+I +AL ++ + + + D
Sbjct: 471 EVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISD---------GNNYTVLTD 521
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T G I +Q + + + L AK +++ + +
Sbjct: 522 IQGLEDHFGDMDFKVAGTRDG-ITALQMDIKIQGITAEILTEALAQAKKARFEILDVIEA 580
Query: 237 VISN 240
I
Sbjct: 581 TIPE 584
Score = 113 bits (281), Expect = 3e-23, Method: Composition-based stats.
Identities = 42/232 (18%), Positives = 85/232 (36%), Gaps = 26/232 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKV---PMWIRNTKHGWITAEYGMLP 67
RE+ + V+K A GS +V++G++ +LT A + +K+ + + G P
Sbjct: 51 RELIVETGQVAKQANGSVVVRYGESTVLTAAVMSKKMATGDFFPLQVNYEEKMYAAGKFP 110
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R GR + R+I R +R + Q+I +
Sbjct: 111 GGFMKR------EGRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDENASAPM 164
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
AA+ G+ +A G +A + G + G I++ + +
Sbjct: 165 AAMFGSSLA-------------LSISDIPFDGPIAGVQVGYVDGQIIINPSQEQAEQSLL 211
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
+ T I V+ A+ S++ L + + +LI Q+++++
Sbjct: 212 ELTVAGTKH-AINMVESGAKE--LSEEIMLEALLKGHEAVKELIAFQEEIVA 260
>gi|218961755|ref|YP_001741530.1| polynucleotide phosphorylase/polyadenylase [Candidatus Cloacamonas
acidaminovorans]
gi|167730412|emb|CAO81324.1| polynucleotide phosphorylase/polyadenylase [Candidatus Cloacamonas
acidaminovorans]
Length = 743
Score = 141 bits (355), Expect = 7e-32, Method: Composition-based stats.
Identities = 46/243 (18%), Positives = 87/243 (35%), Gaps = 18/243 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHL----LTTATLEEKVPMWIRNTKHG 57
R+ GR + +REI+ V GS L G+T +E+V +
Sbjct: 324 RVDGRGTDDIREITCEIDVLPRVHGSALFTRGETQSLGTLTLGGGTDEQVIDGLETEYKK 383
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + R+ G RAL++V+ I I D
Sbjct: 384 SFYLHYNFPPYSVGEVGRIGPTGRRELGHGNL----AERALKAVLPDKDSFPYTIRIVAD 439
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
++++G + A+I +AL ++ + +++G + ++
Sbjct: 440 TLESNGSSSMASICSGCLALMAGGVPIKAPVAGIAMGLIMEGEDYVVLTDIM-------- 491
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T G I +Q + + +++ LN AK ++ + +
Sbjct: 492 -GLEDHLGDMDFKCAGTREG-ITAMQMDIKISGITREIMQIALNKAKSARFKILDIMAEC 549
Query: 238 ISN 240
I+
Sbjct: 550 IAE 552
Score = 101 bits (251), Expect = 9e-20, Method: Composition-based stats.
Identities = 43/241 (17%), Positives = 86/241 (35%), Gaps = 28/241 (11%)
Query: 6 RQENQM--REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKV----PMWIRNTKHGW 58
R+E R++ + ++K A GS +++G+T +L TAT+ ++ + +
Sbjct: 8 RRETDFCGRKLIVETGKMAKQANGSVFIQYGETAVLVTATMSKEPAEDQDFFPLTVDYIE 67
Query: 59 ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDV 118
G +P R + + + R+I R++R + I++
Sbjct: 68 KMYAAGKIPGGFFKR------ESKPSTDATLMARVIDRSIRPLFPEGFRNQVHIVVTVLS 121
Query: 119 IQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLD 178
T + GA +A G +A+++ G + +V+
Sbjct: 122 FDGVTDPSTMGVFGASLA-------------LSISDIPFNGPIASVTVGYIDNQFVVNPH 168
Query: 179 YGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
+ E T V IV ++ +A S++ + I L LQ+D I
Sbjct: 169 FNEIETQSKLNLTVAGSESSIVMIESAASE--LSEEMMLDAVFTGHKEIQKLCALQQDFI 226
Query: 239 S 239
S
Sbjct: 227 S 227
>gi|312133835|ref|YP_004001174.1| pnp [Bifidobacterium longum subsp. longum BBMN68]
gi|311773126|gb|ADQ02614.1| PnP [Bifidobacterium longum subsp. longum BBMN68]
Length = 913
Score = 141 bits (355), Expect = 7e-32, Method: Composition-based stats.
Identities = 47/241 (19%), Positives = 86/241 (35%), Gaps = 14/241 (5%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +R +S + GS L + G+T +L TL E+ + +
Sbjct: 346 RIDGRGLRDIRTLSAEVDIVPRVHGSALFQRGETQILGVTTLNMLKMEQQIDALSGPQSK 405
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y M P STG + + R+ G +AL V+ I +
Sbjct: 406 RYMHNYEMPPYSTGETGRVGSPKRREIGHGAL----AEKALVPVLPSREEFPYAIRQVSE 461
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
I ++G T ++ + ++L ++ + V + G + D+
Sbjct: 462 AIGSNGSTSMGSVCASTLSLLAAGVPLKAPVAGIAMGLV-----SGDVDGKHIFKTLTDI 516
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED+ D+D T I +Q + D A L AK+ A ++++ +
Sbjct: 517 LGAEDAFGDMDFKVAGTSEF-ITALQLDTKLDGIPADILAAALQQAKEARATILEVINEC 575
Query: 238 I 238
I
Sbjct: 576 I 576
Score = 68.3 bits (165), Expect = 9e-10, Method: Composition-based stats.
Identities = 35/242 (14%), Positives = 70/242 (28%), Gaps = 32/242 (13%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGD-THLLTTATLE----EKVPMWIRNTKHGWITAEYGM 65
R + +++ A+G+ D + +L+T T E + G
Sbjct: 21 RTLRFETGRLAQQADGAVAAYLDDDSMILSTTTAGSSPKENYDFFPLTVDVEEKMYAAGK 80
Query: 66 LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125
+P S R GR + R+I R LR + + Q++ + D
Sbjct: 81 IPGSFFRR------EGRPSSEAILACRIIDRPLRPLFPHTLRNEVQVVETVLAVNPDDAY 134
Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185
A+ A + E + +L+ + VA + G
Sbjct: 135 DVIALNAASASTMISGLPFEGPVSGVRLALIDGQWVAFPRWSERERAVFEIVVAGR---- 190
Query: 186 DVDANFVMTDSGHIVEVQGSAERATFS-----------QDHFFAMLNLAKDRIADLIKLQ 234
+ I ++ A + + ++ L AK I + + Q
Sbjct: 191 -----VIENGDVAIAMIEAGAGKNAWHLIYDEGQTKPDEEVVAGGLEAAKPFIKVICEAQ 245
Query: 235 KD 236
+
Sbjct: 246 DE 247
>gi|308235438|ref|ZP_07666175.1| polynucleotide phosphorylase/polyadenylase [Gardnerella vaginalis
ATCC 14018]
gi|311114219|ref|YP_003985440.1| polyribonucleotide nucleotidyltransferase [Gardnerella vaginalis
ATCC 14019]
gi|310945713|gb|ADP38417.1| polyribonucleotide nucleotidyltransferase [Gardnerella vaginalis
ATCC 14019]
Length = 914
Score = 141 bits (355), Expect = 7e-32, Method: Composition-based stats.
Identities = 46/241 (19%), Positives = 85/241 (35%), Gaps = 14/241 (5%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +R +S + GS L + G+T +L TL E+ + +
Sbjct: 346 RIDGRGLRDIRTLSAEVDIVPRVHGSALFQRGETQILGVTTLNMLKMEQQVDALSGPQTK 405
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y M P STG + + R+ G +AL V+ I +
Sbjct: 406 RYMHNYEMPPYSTGETGRVGSPKRREIGHGAL----AEKALVPVLPSREEFPYAIRQVSE 461
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
I ++G T ++ + ++L ++ + V + G + D+
Sbjct: 462 AIGSNGSTSMGSVCASTLSLLAAGVPLKAPVAGIAMGLV-----SGDVDGKHIFKTLTDI 516
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED+ D+D T I +Q + D A L A + A ++++ +
Sbjct: 517 LGAEDAFGDMDFKVAGTSEF-ITALQLDTKLDGIPADILAAALQQAHEARATILEVINEC 575
Query: 238 I 238
I
Sbjct: 576 I 576
Score = 67.6 bits (163), Expect = 1e-09, Method: Composition-based stats.
Identities = 36/242 (14%), Positives = 69/242 (28%), Gaps = 32/242 (13%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGD-THLLTTATLE----EKVPMWIRNTKHGWITAEYGM 65
R + +++ A+G+ D + +L+T T E + G
Sbjct: 21 RTLRFETGRLAQQADGAVAAYLDDDSMILSTTTAGSSPKENYDFFPLTVDVEEKMYAAGK 80
Query: 66 LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125
+P S R GR + R+I R LR + + Q++ I D
Sbjct: 81 IPGSFFRR------EGRPSNEATLACRIIDRPLRPLFPHTLRNEVQVVETILAINPDDAY 134
Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185
A+ A + E + +L+ + VA + G
Sbjct: 135 DVIALNAASASTMISGLPFEGPVSGVRLALIDGQWVAFPRWSERERAVFEIVVAGR---- 190
Query: 186 DVDANFVMTDSGHIVEVQGSAERATF-----------SQDHFFAMLNLAKDRIADLIKLQ 234
+ I ++ A + + ++ L AK I + Q
Sbjct: 191 -----VIENGDVAIAMIEAGAGKNAWNLIYNEGQIKPDEEVVAGGLEAAKPFIKVICDAQ 245
Query: 235 KD 236
+
Sbjct: 246 NE 247
>gi|148998264|ref|ZP_01825733.1| polyribonucleotide nucleotidyltransferase [Streptococcus pneumoniae
SP11-BS70]
gi|147755907|gb|EDK62951.1| polyribonucleotide nucleotidyltransferase [Streptococcus pneumoniae
SP11-BS70]
Length = 775
Score = 141 bits (355), Expect = 7e-32, Method: Composition-based stats.
Identities = 42/244 (17%), Positives = 80/244 (32%), Gaps = 18/244 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56
+R GR+ +++R + GS L G T L+ T E ++ +
Sbjct: 355 VRPDGRKVDEIRPLDAVVDFLPRVHGSGLFTRGQTQALSVLTLAPMGETQIIDGLDPEYK 414
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y S G + A R+ G RAL V+ I +
Sbjct: 415 KRFMHHYNFPQYSVGETGRYGAPGRREIGHGALG----ERALAQVLPSLEEFPYAIRLVA 470
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V++++G + A+I +AL ++ + + + D
Sbjct: 471 EVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISD---------GNNYTVLTD 521
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T G I +Q + + + L AK +++ + +
Sbjct: 522 IQGLEDHFGDMDFKVAGTRDG-ITALQMDIKIQGITAEILTEALAQAKKARFEILDVIEA 580
Query: 237 VISN 240
I
Sbjct: 581 TIPE 584
Score = 112 bits (279), Expect = 6e-23, Method: Composition-based stats.
Identities = 42/232 (18%), Positives = 85/232 (36%), Gaps = 26/232 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKV---PMWIRNTKHGWITAEYGMLP 67
RE+ + V+K A GS +V++G++ +LT A + +K+ + + G P
Sbjct: 51 RELIVETGQVAKQANGSVVVRYGESTVLTAAVMSKKMATGDFFPLQVNYEEKMYAAGKFP 110
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R GR + R+I R +R + Q+I +
Sbjct: 111 GGFMKR------EGRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDENASAPM 164
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
AA+ G+ +A G +A + G + G I++ + +
Sbjct: 165 AAMFGSSLA-------------LSISDIPFDGPIAGVQVGYVDGQIIINPSQEQAEQSLL 211
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
+ T I V+ A+ S++ L + + +LI Q+++++
Sbjct: 212 ELTVAGTKH-AINMVESGAKE--LSEEIMLEALLKGHEAVKELITFQEEIVA 260
>gi|153954062|ref|YP_001394827.1| polynucleotide phosphorylase/polyadenylase [Clostridium kluyveri
DSM 555]
gi|189037304|sp|A5N848|PNP_CLOK5 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|257096734|sp|B9E1K8|PNP_CLOK1 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|146346943|gb|EDK33479.1| Pnp [Clostridium kluyveri DSM 555]
Length = 708
Score = 141 bits (355), Expect = 8e-32, Method: Composition-based stats.
Identities = 46/244 (18%), Positives = 86/244 (35%), Gaps = 16/244 (6%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHG 57
R+ GR+ +++R IS A G+ L G T ++T T + ++ +
Sbjct: 312 RVDGREFDEVRPISCEVGFLPRAHGTGLFTRGLTQVMTVVTLGSLGDVQILDGVGLEDSK 371
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y STG R+ G +AL ++ + I + +
Sbjct: 372 RYMHHYNFPSYSTGEVRPLRGPGRREIGHGAL----AEKALEPLIPMEEQFPYTIRLVSE 427
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
V+ ++G T A+I G+ +AL D ++ + + V + + D+
Sbjct: 428 VLSSNGSTSQASICGSTLALLDAGVPIKRPAAGIAMGLVTSED-------LSQEEILTDI 480
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T+ G I +Q + S L A+ +++ K
Sbjct: 481 QGLEDFFGDMDFKVGGTEKG-ITAIQFDTKIHGLSNKCIKETLEKARTARLYILEKMKQC 539
Query: 238 ISNE 241
I
Sbjct: 540 IPEH 543
Score = 79.5 bits (194), Expect = 3e-13, Method: Composition-based stats.
Identities = 36/241 (14%), Positives = 79/241 (32%), Gaps = 33/241 (13%)
Query: 5 GRQENQMREISLT-RRVSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKHGWI 59
GR ++ + L+ +GDT +L A E + + + ++
Sbjct: 11 GRTL----KVDCEKVGMLSNCG--MLISYGDTVVLINANASDKPREGIDFFPLSIEYEER 64
Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119
G +P R G+ ++ R I R LR + Q++ +
Sbjct: 65 LYSVGKIPGGFIKR------EGKPSEKAILNARAIDRPLRPLFPKGYRNDVQVVCTVLSV 118
Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179
D A+ GA +AL S V +++ G++ G I++ +
Sbjct: 119 DQDNLPNIVAMNGASLALC-------------ISSIPFITPVGSVAVGLVDGNFIINPNL 165
Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
+ ++ T ++ V+ A +D + + + + Q++V+
Sbjct: 166 EDREKSTLNLTVCATKE-RVMMVEAGACEVP--EDIMYDAIIFGFEECKKIALFQEEVMK 222
Query: 240 N 240
Sbjct: 223 K 223
>gi|23336421|ref|ZP_00121639.1| COG1185: Polyribonucleotide nucleotidyltransferase (polynucleotide
phosphorylase) [Bifidobacterium longum DJO10A]
gi|23466099|ref|NP_696702.1| polynucleotide phosphorylase/polyadenylase [Bifidobacterium longum
NCC2705]
gi|189440526|ref|YP_001955607.1| polynucleotide phosphorylase/polyadenylase [Bifidobacterium longum
DJO10A]
gi|81753609|sp|Q8G447|PNP_BIFLO RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|226702620|sp|B3DPX0|PNP_BIFLD RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|23326831|gb|AAN25338.1| PnpA [Bifidobacterium longum NCC2705]
gi|189428961|gb|ACD99109.1| Polyribonucleotide nucleotidyltransferase [Bifidobacterium longum
DJO10A]
gi|291516498|emb|CBK70114.1| polyribonucleotide nucleotidyltransferase [Bifidobacterium longum
subsp. longum F8]
Length = 913
Score = 141 bits (355), Expect = 8e-32, Method: Composition-based stats.
Identities = 47/241 (19%), Positives = 86/241 (35%), Gaps = 14/241 (5%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +R +S + GS L + G+T +L TL E+ + +
Sbjct: 346 RIDGRGLRDIRTLSAEVDIVPRVHGSALFQRGETQILGVTTLNMLKMEQQIDALSGPQSK 405
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y M P STG + + R+ G +AL V+ I +
Sbjct: 406 RYMHNYEMPPYSTGETGRVGSPKRREIGHGAL----AEKALVPVLPSREEFPYAIRQVSE 461
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
I ++G T ++ + ++L ++ + V + G + D+
Sbjct: 462 AIGSNGSTSMGSVCASTLSLLAAGVPLKAPVAGIAMGLV-----SGDVDGKHIFKTLTDI 516
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED+ D+D T I +Q + D A L AK+ A ++++ +
Sbjct: 517 LGAEDAFGDMDFKVAGTSEF-ITALQLDTKLDGIPADILAAALQQAKEARATILEVINEC 575
Query: 238 I 238
I
Sbjct: 576 I 576
Score = 68.3 bits (165), Expect = 1e-09, Method: Composition-based stats.
Identities = 35/242 (14%), Positives = 70/242 (28%), Gaps = 32/242 (13%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGD-THLLTTATLE----EKVPMWIRNTKHGWITAEYGM 65
R + +++ A+G+ D + +L+T T E + G
Sbjct: 21 RTLRFETGRLAQQADGAVAAYLDDDSMILSTTTAGSSPKENYDFFPLTVDVEEKMYAAGK 80
Query: 66 LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125
+P S R GR + R+I R LR + + Q++ + D
Sbjct: 81 IPGSFFRR------EGRPSSEAILACRIIDRPLRPLFPHTLRNEVQVVETVLAVNPDDAY 134
Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185
A+ A + E + +L+ + VA + G
Sbjct: 135 DVIALNAASASTMISGLPFEGPVSGVRLALIDGQWVAFPRWSERERAVFEIVVAGR---- 190
Query: 186 DVDANFVMTDSGHIVEVQGSAERATFS-----------QDHFFAMLNLAKDRIADLIKLQ 234
+ I ++ A + + ++ L AK I + + Q
Sbjct: 191 -----VIENGDVAIAMIEAGAGKNAWHLIYDEGQTKPDEEVVAGGLEAAKPFIKVICEAQ 245
Query: 235 KD 236
+
Sbjct: 246 DE 247
>gi|227546434|ref|ZP_03976483.1| polynucleotide phosphorylase/polyadenylase [Bifidobacterium longum
subsp. infantis ATCC 55813]
gi|227213091|gb|EEI80970.1| polynucleotide phosphorylase/polyadenylase [Bifidobacterium longum
subsp. infantis ATCC 55813]
Length = 913
Score = 141 bits (355), Expect = 8e-32, Method: Composition-based stats.
Identities = 47/241 (19%), Positives = 86/241 (35%), Gaps = 14/241 (5%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +R +S + GS L + G+T +L TL E+ + +
Sbjct: 346 RIDGRGLRDIRTLSAEVDIVPRVHGSALFQRGETQILGVTTLNMLKMEQQIDALSGPQSK 405
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y M P STG + + R+ G +AL V+ I +
Sbjct: 406 RYMHNYEMPPYSTGETGRVGSPKRREIGHGAL----AEKALVPVLPSREEFPYAIRQVSE 461
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
I ++G T ++ + ++L ++ + V + G + D+
Sbjct: 462 AIGSNGSTSMGSVCASTLSLLAAGVPLKAPVAGIAMGLV-----SGDVDGKHIFKTLTDI 516
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED+ D+D T I +Q + D A L AK+ A ++++ +
Sbjct: 517 LGAEDAFGDMDFKVAGTSEF-ITALQLDTKLDGIPADILAAALQQAKEARATILEVINEC 575
Query: 238 I 238
I
Sbjct: 576 I 576
Score = 67.9 bits (164), Expect = 1e-09, Method: Composition-based stats.
Identities = 35/242 (14%), Positives = 70/242 (28%), Gaps = 32/242 (13%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGD-THLLTTATLE----EKVPMWIRNTKHGWITAEYGM 65
R + +++ A+G+ D + +L+T T E + G
Sbjct: 21 RTLRFETGRLAQQADGAVAAYLDDDSMILSTTTAGSSPKENYDFFPLTVDVEEKMYAAGK 80
Query: 66 LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125
+P S R GR + R+I R LR + + Q++ + D
Sbjct: 81 IPGSFFRR------EGRPSSEAILACRIIDRPLRPLFPHTLRNEVQVVETVLAVNPDDAY 134
Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185
A+ A + E + +L+ + VA + G
Sbjct: 135 DVIALNAASASTMISGLPFEGPVSGVRLALIDGQWVAFPRWSERERAVFEIVVAGR---- 190
Query: 186 DVDANFVMTDSGHIVEVQGSAERATF-----------SQDHFFAMLNLAKDRIADLIKLQ 234
+ I ++ A + + ++ L AK I + + Q
Sbjct: 191 -----VIENGDVAIAMIEAGAGKNAWRLIYDEGQTKPDEEVVAGGLEAAKPFIKVICEAQ 245
Query: 235 KD 236
+
Sbjct: 246 DE 247
>gi|226493578|ref|NP_001146202.1| hypothetical protein LOC100279772 [Zea mays]
gi|219886165|gb|ACL53457.1| unknown [Zea mays]
Length = 733
Score = 141 bits (355), Expect = 8e-32, Method: Composition-based stats.
Identities = 51/243 (20%), Positives = 90/243 (37%), Gaps = 11/243 (4%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56
+R+ GRQ +++R + GS L GDT +L T T + + I
Sbjct: 129 LRVDGRQLDEVRPLYCESNTYPLLHGSALFSRGDTQVLCTVTLGAPGDAQRLDSIVGPPT 188
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P S KR ++ R+ G +AL +V+ + + ++
Sbjct: 189 KRFMLHYSFPPFSIDEVAKRGGLNRREVGHGTL----AEKALLAVLPPESDFPYTVRVNA 244
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V+ +DG T A++ G +AL D + + + V + A + + + D
Sbjct: 245 EVMASDGSTSMASVCGGSMALMDAGIPVREHVAGVSVGLVSQVDPA--TGDISNYRILTD 302
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T G I +Q + A D L A+ ++
Sbjct: 303 ILGLEDHLGDMDFKIAGTRKG-ITAIQLDIKPAGIPLDIICESLEPARKARNQILDRMDQ 361
Query: 237 VIS 239
IS
Sbjct: 362 EIS 364
>gi|282882000|ref|ZP_06290641.1| polyribonucleotide nucleotidyltransferase [Peptoniphilus lacrimalis
315-B]
gi|281298030|gb|EFA90485.1| polyribonucleotide nucleotidyltransferase [Peptoniphilus lacrimalis
315-B]
Length = 722
Score = 141 bits (355), Expect = 8e-32, Method: Composition-based stats.
Identities = 47/241 (19%), Positives = 87/241 (36%), Gaps = 18/241 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R GR+ ++R +S + A GS L G T +L+ L EE+ + + K
Sbjct: 312 RPDGRKLEEIRHLSSEVGLLPRAHGSGLFTRGQTQVLSVTALGALSEEQTIDGLGDDKPK 371
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y S G+ + R+ G RAL V+ I + +
Sbjct: 372 HYIHHYNFPGFSVGDTKPSRSPGRREIGHGAL----AERALIPVIPSIEEFPYTIRVVSE 427
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
V+ ++G + A++ G+ ++L D ++ + + + V + D+
Sbjct: 428 VLSSNGSSSQASVCGSTLSLMDAGVPIKAPVAGIAMGLIEEHGV---------TKILTDI 478
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T G I +Q + ++ L AK +++ K
Sbjct: 479 QGLEDHFGDMDFKVAGTREG-ITAIQMDIKVEGIKKEILEVALERAKVARLEILDHLKTT 537
Query: 238 I 238
I
Sbjct: 538 I 538
Score = 106 bits (264), Expect = 3e-21, Method: Composition-based stats.
Identities = 45/233 (19%), Positives = 87/233 (37%), Gaps = 27/233 (11%)
Query: 13 EISLTRR-VSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKHGWITAEYGMLP 67
E+ +T V++ A G CLV++GDT +L TAT E + + + + G +P
Sbjct: 13 ELKVTVGKVAEQANGECLVQYGDTVVLVTATSSKEPREGIDFFPLSVDYEEKMYAVGKIP 72
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R GR ++ R+I R LR + QI+ + D
Sbjct: 73 GGFIKR------EGRPSEKATLTARLIDRPLRPLFPEGYRNDVQIVATVLSVDQDHIPDI 126
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
A+ G+ +AL G ++ G++ G +++ + + D+
Sbjct: 127 PAMIGSSIALC-------------LSDIPFDGPTGSVQVGLVDGEYVINPNQEQREKTDI 173
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
+ T S I+ V+ A S++ + + I ++ ++S
Sbjct: 174 NLMLSGTSS-AIMMVEAGANI--VSEEQMLNAILTGHEAIKEICHFIDSIVSE 223
>gi|260591852|ref|ZP_05857310.1| polyribonucleotide nucleotidyltransferase [Prevotella veroralis
F0319]
gi|260536136|gb|EEX18753.1| polyribonucleotide nucleotidyltransferase [Prevotella veroralis
F0319]
Length = 751
Score = 141 bits (355), Expect = 8e-32, Method: Composition-based stats.
Identities = 46/243 (18%), Positives = 87/243 (35%), Gaps = 18/243 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +++R I GS + + G+T L+T TL +EK+ + + +
Sbjct: 325 RMDGRATDEIRPIWCEVDTLPMPHGSAIFQRGETMSLSTCTLGTKMDEKMVDNVLDKSYQ 384
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P TG + V R+ G RAL+ + + +
Sbjct: 385 RFLLHYNFPPFCTGEAKAQRGVGRREIGHGHL----AWRALKGQIPAD--FPYTVRLVSQ 438
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+++++G + A + +AL D M+ + + + G + D+
Sbjct: 439 ILESNGSSSMATVCAGTLALMDAGVPMKKPVSGIAMGLIKN-------PGEDKYAVLSDI 491
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T G + Q + S + L AK ++ L +
Sbjct: 492 LGDEDHLGDMDFKTTGTKDG-LTATQMDIKCDGLSFEILEKALMQAKAGREHILNLLTET 550
Query: 238 ISN 240
I+
Sbjct: 551 IAE 553
Score = 106 bits (263), Expect = 3e-21, Method: Composition-based stats.
Identities = 33/235 (14%), Positives = 72/235 (30%), Gaps = 25/235 (10%)
Query: 3 LSGRQENQMREISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
GR IS+ V+K A+G+ +++ G+T LL T ++
Sbjct: 11 PDGRT------ISIETGKVAKQADGAAVLRMGNTVLLATVCAAKEAVPGTDFMPLQVDYR 64
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
E G+ R++ R LR +
Sbjct: 65 EQYAAAGRYP--GGFTKREGKANDDEILTSRLVDRVLRPLFPSDYHCEVY---------- 112
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
+ ++ + D L + + + + + G +++ + +
Sbjct: 113 ---VQVMLLSADGIDQPDALAGFAASAALAASDIPIDYPTSEVRVARVNGEYVINPTFEQ 169
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
D+D T +I+ V+ E S+ L A + I + ++Q++
Sbjct: 170 MKHADMDLMVGATKD-NIMMVE--GEMDEVSEQDLIGALKAAHEAIKPMCEMQEE 221
>gi|148983970|ref|ZP_01817289.1| polyribonucleotide nucleotidyltransferase [Streptococcus pneumoniae
SP3-BS71]
gi|147924117|gb|EDK75229.1| polyribonucleotide nucleotidyltransferase [Streptococcus pneumoniae
SP3-BS71]
Length = 775
Score = 141 bits (355), Expect = 8e-32, Method: Composition-based stats.
Identities = 42/244 (17%), Positives = 80/244 (32%), Gaps = 18/244 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56
+R GR+ +++R + GS L G T L+ T E ++ +
Sbjct: 355 VRPDGRKVDEIRPLDAVVDFLPRVHGSGLFTRGQTQALSVLTLAPMGETQIIDGLDPEYK 414
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y S G + A R+ G RAL V+ I +
Sbjct: 415 KRFMHHYNFPQYSVGETGRYGAPGRREIGHGALG----ERALAQVLPSLEEFPYAIRLVA 470
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V++++G + A+I +AL ++ + + + D
Sbjct: 471 EVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISD---------GNNYTVLTD 521
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T G I +Q + + + L AK +++ + +
Sbjct: 522 IQGLEDHFGDMDFKVAGTRDG-ITALQMDIKIQGITAEILTEALAQAKKARFEILDVIEA 580
Query: 237 VISN 240
I
Sbjct: 581 TIPE 584
Score = 113 bits (281), Expect = 3e-23, Method: Composition-based stats.
Identities = 42/232 (18%), Positives = 85/232 (36%), Gaps = 26/232 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKV---PMWIRNTKHGWITAEYGMLP 67
RE+ + V+K A GS +V++G++ +LT A + +K+ + + G P
Sbjct: 51 RELIVETGQVAKQANGSVVVRYGESTVLTAAVMSKKMATGDFFPLQVNYEEKMYAAGKFP 110
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R GR + R+I R +R + Q+I +
Sbjct: 111 GGFMKR------EGRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDENASAPM 164
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
AA+ G+ +A G +A + G + G I++ + +
Sbjct: 165 AAMFGSSLA-------------LSISDIPFDGPIAGVQVGYVDGQIIINPSQEQAEQSLL 211
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
+ T I V+ A+ S++ L + + +LI Q+++++
Sbjct: 212 ELTVAGTKH-AINMVESGAKE--LSEEIMLEALLKGHEAVKELIAFQEEIVA 260
>gi|219854675|ref|YP_002471797.1| hypothetical protein CKR_1332 [Clostridium kluyveri NBRC 12016]
gi|219568399|dbj|BAH06383.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
Length = 715
Score = 141 bits (355), Expect = 8e-32, Method: Composition-based stats.
Identities = 46/244 (18%), Positives = 86/244 (35%), Gaps = 16/244 (6%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHG 57
R+ GR+ +++R IS A G+ L G T ++T T + ++ +
Sbjct: 319 RVDGREFDEVRPISCEVGFLPRAHGTGLFTRGLTQVMTVVTLGSLGDVQILDGVGLEDSK 378
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y STG R+ G +AL ++ + I + +
Sbjct: 379 RYMHHYNFPSYSTGEVRPLRGPGRREIGHGAL----AEKALEPLIPMEEQFPYTIRLVSE 434
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
V+ ++G T A+I G+ +AL D ++ + + V + + D+
Sbjct: 435 VLSSNGSTSQASICGSTLALLDAGVPIKRPAAGIAMGLVTSED-------LSQEEILTDI 487
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T+ G I +Q + S L A+ +++ K
Sbjct: 488 QGLEDFFGDMDFKVGGTEKG-ITAIQFDTKIHGLSNKCIKETLEKARTARLYILEKMKQC 546
Query: 238 ISNE 241
I
Sbjct: 547 IPEH 550
Score = 79.5 bits (194), Expect = 3e-13, Method: Composition-based stats.
Identities = 36/241 (14%), Positives = 79/241 (32%), Gaps = 33/241 (13%)
Query: 5 GRQENQMREISLT-RRVSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKHGWI 59
GR ++ + L+ +GDT +L A E + + + ++
Sbjct: 18 GRTL----KVDCEKVGMLSNCG--MLISYGDTVVLINANASDKPREGIDFFPLSIEYEER 71
Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119
G +P R G+ ++ R I R LR + Q++ +
Sbjct: 72 LYSVGKIPGGFIKR------EGKPSEKAILNARAIDRPLRPLFPKGYRNDVQVVCTVLSV 125
Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179
D A+ GA +AL S V +++ G++ G I++ +
Sbjct: 126 DQDNLPNIVAMNGASLALC-------------ISSIPFITPVGSVAVGLVDGNFIINPNL 172
Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
+ ++ T ++ V+ A +D + + + + Q++V+
Sbjct: 173 EDREKSTLNLTVCATKE-RVMMVEAGACEVP--EDIMYDAIIFGFEECKKIALFQEEVMK 229
Query: 240 N 240
Sbjct: 230 K 230
>gi|149002268|ref|ZP_01827210.1| polyribonucleotide nucleotidyltransferase [Streptococcus pneumoniae
SP14-BS69]
gi|147759583|gb|EDK66574.1| polyribonucleotide nucleotidyltransferase [Streptococcus pneumoniae
SP14-BS69]
Length = 775
Score = 141 bits (355), Expect = 8e-32, Method: Composition-based stats.
Identities = 42/244 (17%), Positives = 80/244 (32%), Gaps = 18/244 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56
+R GR+ +++R + GS L G T L+ T E ++ +
Sbjct: 355 VRPDGRKVDEIRPLDAVVDFLPRVHGSGLFTRGQTQALSVLTLAPMGETQIIDGLDPEYK 414
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y S G + A R+ G RAL V+ I +
Sbjct: 415 KRFMHHYNFPQYSVGETGRYGAPGRREIGHGALG----ERALAQVLPSLEEFPYAIRLVA 470
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V++++G + A+I +AL ++ + + + D
Sbjct: 471 EVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISD---------GNNYTVLTD 521
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T G I +Q + + + L AK +++ + +
Sbjct: 522 IQGLEDHFGDMDFKVAGTRDG-ITALQMDIKIQGITAEILTEALAQAKKARFEILDVIEA 580
Query: 237 VISN 240
I
Sbjct: 581 TIPE 584
Score = 113 bits (281), Expect = 3e-23, Method: Composition-based stats.
Identities = 42/232 (18%), Positives = 85/232 (36%), Gaps = 26/232 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKV---PMWIRNTKHGWITAEYGMLP 67
RE+ + V+K A GS +V++G++ +LT A + +K+ + + G P
Sbjct: 51 RELIVETGQVAKQANGSVVVRYGESTVLTAAVMSKKMATGDFFPLQVNYEEKMYAAGKFP 110
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R GR + R+I R +R + Q+I +
Sbjct: 111 GGFMKR------EGRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDENASAPM 164
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
AA+ G+ +A G +A + G + G I++ + +
Sbjct: 165 AAMFGSSLA-------------LSISDIPFDGPIAGVQVGYVDGQIIINPSQEQAEQSLL 211
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
+ T I V+ A+ S++ L + + +LI Q+++++
Sbjct: 212 ELTVAGTKH-AINMVESGAKE--LSEEIMLEALLKGHEAVKELIAFQEEIVA 260
>gi|262202098|ref|YP_003273306.1| polyribonucleotide nucleotidyltransferase [Gordonia bronchialis DSM
43247]
gi|262085445|gb|ACY21413.1| polyribonucleotide nucleotidyltransferase [Gordonia bronchialis DSM
43247]
Length = 759
Score = 141 bits (355), Expect = 8e-32, Method: Composition-based stats.
Identities = 44/244 (18%), Positives = 82/244 (33%), Gaps = 14/244 (5%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKH 56
R+ GR +R +S V A GS L + G+T +L TL+ + +
Sbjct: 360 FRIDGRGITDIRSLSAEVAVIPRAHGSALFERGETQILGVTTLDMVKMAQQIDSLGPETS 419
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P STG + + R+ G RAL V+ I
Sbjct: 420 KRYMHHYNFPPYSTGETGRVGSPKRREIGHGAL----AERALVPVLPSVEEFPYAIRQVS 475
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+ + ++G T ++ + ++L + ++ + V G + D
Sbjct: 476 EALSSNGSTSMGSVCASTMSLLNAGVPLKAPVAGIAMGLVSD-----TVDGETRYVALTD 530
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED+ D+D T + +Q + L+ AKD ++ + +
Sbjct: 531 ILGAEDAFGDMDFKVAGTKDF-VTALQLDTKLDGIPSQVLAGALSQAKDARLTILDVMAE 589
Query: 237 VISN 240
I
Sbjct: 590 AIDE 593
>gi|73748737|ref|YP_307976.1| polynucleotide phosphorylase/polyadenylase [Dehalococcoides sp.
CBDB1]
gi|289432763|ref|YP_003462636.1| polyribonucleotide nucleotidyltransferase [Dehalococcoides sp. GT]
gi|123759782|sp|Q3ZXV6|PNP_DEHSC RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|73660453|emb|CAI83060.1| polyribonucleotide nucleotidyltransferase [Dehalococcoides sp.
CBDB1]
gi|288946483|gb|ADC74180.1| polyribonucleotide nucleotidyltransferase [Dehalococcoides sp. GT]
Length = 720
Score = 141 bits (355), Expect = 8e-32, Method: Composition-based stats.
Identities = 46/244 (18%), Positives = 88/244 (36%), Gaps = 17/244 (6%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
+R++GR Q+R++ + GS L GDT ++ TL E + +
Sbjct: 311 IRVNGRGIKQLRQLDAETGLLPRVHGSALFTRGDTQVMAITTLGSLQESQQLDGLSAEDT 370
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P STG + + R+ G RAL V+ I +
Sbjct: 371 KRFMLHYNFAPFSTGEVKRSGSPGRREIGHGAL----AERALVPVLPTPEEFPYTIRLVA 426
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
DV+ + G T ++ + ++L D ++ + + + I D
Sbjct: 427 DVVGSSGSTSMGSVCSSSLSLMDAGVPVKKAVAGISIGLI--------TGENDTYCTITD 478
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
++ ED+ D+D T G I +Q + S D + AK+ +++ +
Sbjct: 479 IEGIEDNYGDMDFKVAGTRDG-ITAIQVDMKVKGISFDIIRDAIYQAKEARYNILDVMDK 537
Query: 237 VISN 240
++
Sbjct: 538 ALAQ 541
Score = 90.3 bits (222), Expect = 2e-16, Method: Composition-based stats.
Identities = 38/231 (16%), Positives = 78/231 (33%), Gaps = 27/231 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKHGWITAEYGML 66
R++ + +++ A+ + +++ DT LL T E V + G +
Sbjct: 14 RKLVIESGKLARLADAAITIRYADTELLVTLCSAKKPREGVDFLPLTIDYEERMYAAGKI 73
Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
P R GR ++ R+ R LR ++ QIII +
Sbjct: 74 PGGFIRR------EGRPSEQAILAGRLTDRPLRPLLPKEWRNDLQIIITVIASDKENDAD 127
Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
+ G + +G V A G + G +++ + + +
Sbjct: 128 IWGVVG-------------ASTVLAMSEIPYEGPVGASRIGYINGEFVLNPTFAQLESSQ 174
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
+D V T +V ++ ++ +D + A +LI LQ ++
Sbjct: 175 LDLVVVSTRK-AVVMIEAGSKE--IPEDIMINAIEFAHKANQELIDLQDEI 222
>gi|229495732|ref|ZP_04389460.1| polyribonucleotide nucleotidyltransferase [Porphyromonas
endodontalis ATCC 35406]
gi|229317306|gb|EEN83211.1| polyribonucleotide nucleotidyltransferase [Porphyromonas
endodontalis ATCC 35406]
Length = 737
Score = 141 bits (355), Expect = 8e-32, Method: Composition-based stats.
Identities = 46/240 (19%), Positives = 84/240 (35%), Gaps = 18/240 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRN----TKHG 57
RL GR+ ++R I + GS + G+T LTT TL K + +
Sbjct: 318 RLDGRKTTEIRPIWIETDCLPMPHGSAVFTRGETQSLTTVTLGTKADEKLVDDVLCRCKE 377
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P STG + A R+ G RAL+ ++ ++I D
Sbjct: 378 RFLLHYNFPPFSTGEARPQRATGRREIGHGNL----AFRALKRMIPDEYPYVVRVISDIL 433
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+++G + A + +AL D ++ + + + + + D+
Sbjct: 434 --ESNGSSSMATVCAGTLALMDAGVQIKKPVSGIAMGLISE-------NKGTNYAVLSDI 484
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T G I Q + S + L A++ ++ ++
Sbjct: 485 LGDEDHLGDMDFKVTGTRDG-ITATQMDIKVDGLSYEILERALAQAREGRMHILGKIEEA 543
Score = 102 bits (253), Expect = 6e-20, Method: Composition-based stats.
Identities = 37/241 (15%), Positives = 72/241 (29%), Gaps = 28/241 (11%)
Query: 7 QENQMREISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT----KHGWITA 61
R I + ++K A+G+ V G+T LL T + +
Sbjct: 10 DLGDGRTIKVETGKLAKQADGAVTVTMGNTVLLATVCAAADAAPDCDFMPLQVDYKEKYS 69
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
G P R G+ R++ RALR + + I
Sbjct: 70 AVGRFPGGFTRR------EGKASDYEILTSRLVDRALRPLFPADYHAEVFVNITLFSADG 123
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
L + S +G ++ + + G +++ Y +
Sbjct: 124 VDMPDA-------------LAGLAASSALAVSDIPFEGPISEVRVARINGEFLINPTYEQ 170
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
+ D+D T +I+ V+ E + + +A + I + Q + +S
Sbjct: 171 VANADIDMMVAATID-NIMMVE--GEMDEVQEADMLEAIKVAHEAIKKQCQAQLE-LSEA 226
Query: 242 V 242
V
Sbjct: 227 V 227
>gi|291456054|ref|ZP_06595444.1| polyribonucleotide nucleotidyltransferase [Bifidobacterium breve
DSM 20213]
gi|291382463|gb|EFE89981.1| polyribonucleotide nucleotidyltransferase [Bifidobacterium breve
DSM 20213]
Length = 949
Score = 141 bits (355), Expect = 8e-32, Method: Composition-based stats.
Identities = 47/241 (19%), Positives = 86/241 (35%), Gaps = 14/241 (5%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +R +S + GS L + G+T +L TL E+ + +
Sbjct: 393 RIDGRGLRDIRTLSAEVDIVPRVHGSALFQRGETQILGVTTLNMLKMEQQIDALSGPQSK 452
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y M P STG + + R+ G +AL V+ I +
Sbjct: 453 RYMHNYEMPPYSTGETGRVGSPKRREIGHGAL----AEKALVPVLPSREEFPYAIRQVSE 508
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
I ++G T ++ + ++L ++ + V + G + D+
Sbjct: 509 AIGSNGSTSMGSVCASTLSLLAAGVPLKAPVAGIAMGLV-----SGDVDGKHIFKTLTDI 563
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED+ D+D T I +Q + D A L AK+ A ++++ +
Sbjct: 564 LGAEDAFGDMDFKVAGTSEF-ITALQLDTKLDGIPADILAAALQQAKEARATILEVINEC 622
Query: 238 I 238
I
Sbjct: 623 I 623
Score = 68.3 bits (165), Expect = 8e-10, Method: Composition-based stats.
Identities = 37/242 (15%), Positives = 71/242 (29%), Gaps = 32/242 (13%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGD-THLLTTATLE----EKVPMWIRNTKHGWITAEYGM 65
R + +++ A+G+ D + +L+T T E + G
Sbjct: 68 RTLRFETGRLAQQADGAVAAYLDDDSMILSTTTAGSSPKENYDFFPLTVDVEEKMYAAGK 127
Query: 66 LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125
+P S R GR + R+I R LR + + Q++ + D
Sbjct: 128 IPGSFFRR------EGRPSSEAILACRIIDRPLRPLFPHTLRNEVQVVETVLAVNPDDAY 181
Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185
A+ A + E + +L+ + VA + G
Sbjct: 182 DVIALNAASASTMISGLPFEGPVSGVRLALIDGQWVAFPRWSERERAVFEIVVAGR---- 237
Query: 186 DVDANFVMTDSGHIVEVQGSAERATFS-----------QDHFFAMLNLAKDRIADLIKLQ 234
V I ++ A + + ++ A L AK I + + Q
Sbjct: 238 -----VVENGDVAIAMIEAGAGKNAWHLIYDEGQTKPDEEVVAAGLEAAKPFIKVICEAQ 292
Query: 235 KD 236
+
Sbjct: 293 DE 294
>gi|168490522|ref|ZP_02714665.1| polyribonucleotide nucleotidyltransferase
(Polynucleotidephosphorylase) (PNPase) (Vegetative
protein 15) (VEG15) [Streptococcus pneumoniae
CDC0288-04]
gi|182683523|ref|YP_001835270.1| polyribonucleotide nucleotidyltransferase [Streptococcus pneumoniae
CGSP14]
gi|303253917|ref|ZP_07340038.1| polynucleotide phosphorylase/polyadenylase [Streptococcus
pneumoniae BS455]
gi|303260083|ref|ZP_07346056.1| polynucleotide phosphorylase/polyadenylase [Streptococcus
pneumoniae SP-BS293]
gi|303261267|ref|ZP_07347215.1| polynucleotide phosphorylase/polyadenylase [Streptococcus
pneumoniae SP14-BS292]
gi|303263932|ref|ZP_07349853.1| polynucleotide phosphorylase/polyadenylase [Streptococcus
pneumoniae BS397]
gi|303265923|ref|ZP_07351819.1| polynucleotide phosphorylase/polyadenylase [Streptococcus
pneumoniae BS457]
gi|303268305|ref|ZP_07354102.1| polynucleotide phosphorylase/polyadenylase [Streptococcus
pneumoniae BS458]
gi|182628857|gb|ACB89805.1| polyribonucleotide nucleotidyltransferase [Streptococcus pneumoniae
CGSP14]
gi|183575025|gb|EDT95553.1| polyribonucleotide nucleotidyltransferase
(Polynucleotidephosphorylase) (PNPase) (Vegetative
protein 15) (VEG15) [Streptococcus pneumoniae
CDC0288-04]
gi|302599093|gb|EFL66118.1| polynucleotide phosphorylase/polyadenylase [Streptococcus
pneumoniae BS455]
gi|302637401|gb|EFL67888.1| polynucleotide phosphorylase/polyadenylase [Streptococcus
pneumoniae SP14-BS292]
gi|302638778|gb|EFL69240.1| polynucleotide phosphorylase/polyadenylase [Streptococcus
pneumoniae SP-BS293]
gi|302642143|gb|EFL72493.1| polynucleotide phosphorylase/polyadenylase [Streptococcus
pneumoniae BS458]
gi|302644507|gb|EFL74758.1| polynucleotide phosphorylase/polyadenylase [Streptococcus
pneumoniae BS457]
gi|302646337|gb|EFL76563.1| polynucleotide phosphorylase/polyadenylase [Streptococcus
pneumoniae BS397]
Length = 775
Score = 141 bits (355), Expect = 8e-32, Method: Composition-based stats.
Identities = 42/244 (17%), Positives = 80/244 (32%), Gaps = 18/244 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56
+R GR+ +++R + GS L G T L+ T E ++ +
Sbjct: 355 VRPDGRKVDEIRPLDAVVDFLPRVHGSGLFTRGQTQALSVLTLAPMGETQIIDGLDPEYK 414
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y S G + A R+ G RAL V+ I +
Sbjct: 415 KRFMHHYNFPQYSVGETGRYGAPGRREIGHGALG----ERALAQVLPSLEEFPYAIRLVA 470
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V++++G + A+I +AL ++ + + + D
Sbjct: 471 EVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISD---------GNNYTVLTD 521
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T G I +Q + + + L AK +++ + +
Sbjct: 522 IQGLEDHFGDMDFKVAGTRDG-ITALQMDIKIQGITAEILTEALAQAKKARFEILDVIEA 580
Query: 237 VISN 240
I
Sbjct: 581 TIPE 584
Score = 113 bits (281), Expect = 3e-23, Method: Composition-based stats.
Identities = 42/232 (18%), Positives = 85/232 (36%), Gaps = 26/232 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKV---PMWIRNTKHGWITAEYGMLP 67
RE+ + V+K A GS +V++G++ +LT A + +K+ + + G P
Sbjct: 51 RELIVETGQVAKQANGSVVVRYGESTVLTAAVMSKKMATGDFFPLQVNYEEKMYAAGKFP 110
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R GR + R+I R +R + Q+I +
Sbjct: 111 GGFMKR------EGRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDENASAPM 164
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
AA+ G+ +A G +A + G + G I++ + +
Sbjct: 165 AAMFGSSLA-------------LSISDIPFDGPIAGVQVGYVDGQIIINPSQEQAEQSLL 211
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
+ T I V+ A+ S++ L + + +LI Q+++++
Sbjct: 212 ELTVAGTKH-AINMVESGAKE--LSEEIMLEALLKGHEAVKELIAFQEEIVA 260
>gi|148988952|ref|ZP_01820352.1| polyribonucleotide nucleotidyltransferase [Streptococcus pneumoniae
SP6-BS73]
gi|147925449|gb|EDK76526.1| polyribonucleotide nucleotidyltransferase [Streptococcus pneumoniae
SP6-BS73]
Length = 775
Score = 141 bits (355), Expect = 8e-32, Method: Composition-based stats.
Identities = 42/244 (17%), Positives = 80/244 (32%), Gaps = 18/244 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56
+R GR+ +++R + GS L G T L+ T E ++ +
Sbjct: 355 VRPDGRKVDEIRPLDAVVDFLPRVHGSGLFTRGQTQALSVLTLAPMGETQIIDGLDPEYK 414
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y S G + A R+ G RAL V+ I +
Sbjct: 415 KRFMHHYNFPQYSVGETGRYGAPGRREIGHGALG----ERALAQVLPSLEEFPYAIRLVA 470
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V++++G + A+I +AL ++ + + + D
Sbjct: 471 EVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISD---------GNNYTVLTD 521
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T G I +Q + + + L AK +++ + +
Sbjct: 522 IQGLEDHFGDMDFKVAGTRDG-ITALQMDIKIQGITAEILTEALAQAKKARFEILDVIEA 580
Query: 237 VISN 240
I
Sbjct: 581 TIPE 584
Score = 113 bits (281), Expect = 3e-23, Method: Composition-based stats.
Identities = 42/232 (18%), Positives = 85/232 (36%), Gaps = 26/232 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKV---PMWIRNTKHGWITAEYGMLP 67
RE+ + V+K A GS +V++G++ +LT A + +K+ + + G P
Sbjct: 51 RELIVETGQVAKQANGSVVVRYGESTVLTAAVMSKKMATGDFFPLQVNYEEKMYAAGKFP 110
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R GR + R+I R +R + Q+I +
Sbjct: 111 GGFMKR------EGRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDENASAPM 164
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
AA+ G+ +A G +A + G + G I++ + +
Sbjct: 165 AAMFGSSLA-------------LSISDIPFDGPIAGVQVGYVDGQIIINPSQEQAEQSLL 211
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
+ T I V+ A+ S++ L + + +LI Q+++++
Sbjct: 212 ELTVAGTKH-AINMVESGAKE--LSEEIMLEALLKGHEAVKELIAFQEEIVA 260
>gi|149005700|ref|ZP_01829439.1| polyribonucleotide nucleotidyltransferase [Streptococcus pneumoniae
SP18-BS74]
gi|147762640|gb|EDK69600.1| polyribonucleotide nucleotidyltransferase [Streptococcus pneumoniae
SP18-BS74]
Length = 775
Score = 141 bits (355), Expect = 8e-32, Method: Composition-based stats.
Identities = 42/244 (17%), Positives = 80/244 (32%), Gaps = 18/244 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56
+R GR+ +++R + GS L G T L+ T E ++ +
Sbjct: 355 VRPDGRKVDEIRPLDAVVDFLPRVHGSGLFTRGQTQALSVLTLAPMGETQIIDGLDPEYK 414
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y S G + A R+ G RAL V+ I +
Sbjct: 415 KRFMHHYNFPQYSVGETGRYGAPGRREIGHGALG----ERALAQVLPSLEEFPYAIRLVA 470
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V++++G + A+I +AL ++ + + + D
Sbjct: 471 EVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISD---------GNNYTVLTD 521
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T G I +Q + + + L AK +++ + +
Sbjct: 522 IQGLEDHFGDMDFKVAGTRDG-ITALQMDIKIQGITAEILTEALAQAKKARFEILDVIEA 580
Query: 237 VISN 240
I
Sbjct: 581 TIPE 584
Score = 112 bits (279), Expect = 6e-23, Method: Composition-based stats.
Identities = 41/232 (17%), Positives = 85/232 (36%), Gaps = 26/232 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKV---PMWIRNTKHGWITAEYGMLP 67
RE+ + V+K A GS +V++G++ +LT A + +K+ + + G P
Sbjct: 51 RELIVETGQVAKQANGSVVVRYGESTVLTAAVMSKKMATGDFFPLQVNYEEKMYAAGKFP 110
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R GR + R+I R +R + Q+I +
Sbjct: 111 GGFMKR------EGRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDENASAPM 164
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
AA+ G+ +A G +A + G + G I++ + +
Sbjct: 165 AAMFGSSLA-------------LSISDIPFDGPIAGVQVGYVDGQIIINPSQEQAEQSLL 211
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
+ T + V+ A+ S++ L + + +LI Q+++++
Sbjct: 212 ELTVAGTKH-AVNMVESGAKE--LSEEIMLEALLKGHEAVKELIAFQEEIVA 260
>gi|39938737|ref|NP_950503.1| polynucleotide phosphorylase/polyadenylase [Onion yellows
phytoplasma OY-M]
gi|81402500|sp|Q6YQX2|PNP_ONYPE RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|39721846|dbj|BAD04336.1| polyribonucleotide nucleotidyltransferase [Onion yellows
phytoplasma OY-M]
Length = 715
Score = 141 bits (355), Expect = 8e-32, Method: Composition-based stats.
Identities = 43/244 (17%), Positives = 81/244 (33%), Gaps = 16/244 (6%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
+R R ++R + + A GS L G T L TL E K+ + + ++
Sbjct: 324 IRPDKRGLEEIRTLESQIDLLPRAHGSALFTRGQTQSLAAVTLGCLSESKIIDGLSDEQN 383
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P S G + A S R+ G +A+ V+ I +
Sbjct: 384 KRFMLHYNFPPFSVGAVGRYTAPSRREIGHGTL----AEKAISQVLPEEKDFPYTIRVVS 439
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
++++++G + A + + +AL ++ + V + D
Sbjct: 440 EILESNGSSSQATVCASSLALMASGVPLKKAVAGMSVGLVFD-------QATNKYVILSD 492
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T+ G I +Q + AK +++
Sbjct: 493 IQGLEDHVGDMDLKIAGTNKG-ITALQMDLKIQGIHFKILQEAFLQAKKGRLHILEHMSQ 551
Query: 237 VISN 240
IS
Sbjct: 552 TISQ 555
Score = 74.5 bits (181), Expect = 1e-11, Method: Composition-based stats.
Identities = 38/230 (16%), Positives = 75/230 (32%), Gaps = 27/230 (11%)
Query: 16 LTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKV---PMWIRNTKHGWITAEYGMLPRSTG 71
+ ++ + S LV++ DT +LTT K + G +P S
Sbjct: 17 VEIGTYARNVDASILVRYQDTVVLTTTVFSRKPNNLDFLPLTVIYQEKLYAAGKIPGSFL 76
Query: 72 NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAIT 131
R GR R+I R+LR + Q+I + D + A++
Sbjct: 77 RR------EGRSNDHEILTSRLIDRSLRPLFPDYFQQEVQVINTVLSLDPDFKSELASML 130
Query: 132 GAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANF 191
G+ ++L + + + G + I++ + + +
Sbjct: 131 GSSLSLLISEIPFFEAISG-------------VYVGKINDKFIINPTLQQLANSTLHLMV 177
Query: 192 VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
T ++ ++ A S+ F +N A I L Q + I +
Sbjct: 178 AGTKH-NVTMIEAHANE--VSEQDFLEAINFAHQYIKKLCLFQ-ENIKQQ 223
>gi|88807542|ref|ZP_01123054.1| polyribonucleotide nucleotidyltransferase [Synechococcus sp. WH
7805]
gi|88788756|gb|EAR19911.1| polyribonucleotide nucleotidyltransferase [Synechococcus sp. WH
7805]
Length = 721
Score = 141 bits (355), Expect = 8e-32, Method: Composition-based stats.
Identities = 47/242 (19%), Positives = 90/242 (37%), Gaps = 19/242 (7%)
Query: 2 RLSGRQENQMREISLTRRVSK-YAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
R+ GR +++R IS V GS L + G T +L+TATL + + +
Sbjct: 323 RVDGRTLDEVRPISAAAGVLPKRVHGSGLFQRGLTQVLSTATLGTPSDAQEMDDLNPNTE 382
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P S G + R+ G RA+ V+ + +
Sbjct: 383 KTYLHHYNFPPYSVGETKPMRSPGRREIGHGAL----AERAIIPVLPAKDTFPYVVRVVS 438
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V+ ++G T ++ G+ +AL D ++ + + + +G + D
Sbjct: 439 EVLSSNGSTSMGSVCGSTLALMDAGVPLKAPVSGAAMGLIKEGDEV---------RILTD 489
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D TD G I +Q + + + +N A+ +++ +
Sbjct: 490 IQGIEDFLGDMDFKVAGTDKG-ITALQMDMKITGLAMNTIAEAINKARPARLHILEKMME 548
Query: 237 VI 238
I
Sbjct: 549 AI 550
Score = 113 bits (281), Expect = 3e-23, Method: Composition-based stats.
Identities = 53/235 (22%), Positives = 89/235 (37%), Gaps = 26/235 (11%)
Query: 10 QMREISLTRR-VSKYAEGSCLVKFGDTHLLTTAT---LEEKVPMWIRNTKHGWITAEYGM 65
REI LT + A GS +++ GDT +L TAT E + + G
Sbjct: 11 DGREIRLTTGRYAPQAGGSVMIECGDTSVLVTATRSSGREGIDFLPLICDYEERLYAAGR 70
Query: 66 LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125
+P S R GR R+ I R+I R +R + QI+ C +
Sbjct: 71 IPGSFMRR------EGRPPERATLISRLIDRPMRPLFPSWLRDDLQIVATCMSLDERVPA 124
Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185
++TGA +A +AA+ G+L +++ Y E
Sbjct: 125 DVLSVTGASMATLLAGIPFYG-------------PMAAVRVGLLGDDFVLNPSYREIERG 171
Query: 186 DVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
D+D T G IV V+ A + + ++ + + +LIK Q+ ++ +
Sbjct: 172 DLDLVVAGTPEG-IVMVEAGANQ--LPEQDVIEAIDFGYEAVCELIKAQESILKD 223
>gi|187471099|sp|B0C1M5|PNP_ACAM1 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
Length = 716
Score = 141 bits (355), Expect = 8e-32, Method: Composition-based stats.
Identities = 43/243 (17%), Positives = 83/243 (34%), Gaps = 19/243 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKY-AEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTK 55
+R+ GR+ +++R IS V GS L G T +L+ AT + + +
Sbjct: 322 VRVDGRKLDEVRPISCNVGVLPQRVHGSGLFNRGLTQVLSIATLGTPGDAQEMDDLHPDS 381
Query: 56 HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115
Y P S G + R+ G RAL ++ + +
Sbjct: 382 QKRYLHHYNFPPYSVGETRPMRSPGRREVGHGAL----AERALLPMLPSKEEFPYVLRVV 437
Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIV 175
+V+ ++G T ++ G+ ++L D + + + + +G +
Sbjct: 438 SEVLSSNGSTSMGSVCGSTLSLMDAGVPLAKPVSGAAMGLIKEGEEVRVLTD-------- 489
Query: 176 DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
+ ED D+D T G I +Q + S ++ AK ++
Sbjct: 490 -IQGIEDFLGDMDFKVAGTADG-ITALQMDMKITGLSMKVIAEAIHQAKPARLHILDKML 547
Query: 236 DVI 238
I
Sbjct: 548 ATI 550
Score = 104 bits (260), Expect = 7e-21, Method: Composition-based stats.
Identities = 52/235 (22%), Positives = 88/235 (37%), Gaps = 26/235 (11%)
Query: 10 QMREISLTRR-VSKYAEGSCLVKFGDTHLLTTAT---LEEKVPMWIRNTKHGWITAEYGM 65
REI LT + A G L++ G+T +L TAT E + + G
Sbjct: 11 DGREIKLTIGRFAPQAGGCVLIESGETSVLVTATRSSGREGIDFLPLLVDYEERLYAAGR 70
Query: 66 LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125
+P R GR ++ R+I R +R + QI+ +
Sbjct: 71 VPGGFLRR------EGRPPEKATLTCRLIDRPMRPLFPNWLRDDLQIVATTISMDEQVPP 124
Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185
A+TGA VA KG +AA+ G++ I++ Y E S
Sbjct: 125 DVLAVTGASVATLLAKI-------------PFKGPMAAVRVGLVGDDFIINPTYEEISEG 171
Query: 186 DVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
++D + G ++ V+ A + ++ + + DLIK QK++I+
Sbjct: 172 ELDLVVAGSPDG-VIMVEAGANEVA--EQDMIEAIDFGYEVVCDLIKAQKELIAE 223
>gi|320104936|ref|YP_004180527.1| RNAse PH [Isosphaera pallida ATCC 43644]
gi|319752218|gb|ADV63978.1| RNAse PH [Isosphaera pallida ATCC 43644]
Length = 240
Score = 141 bits (355), Expect = 8e-32, Method: Composition-based stats.
Identities = 104/239 (43%), Positives = 140/239 (58%), Gaps = 8/239 (3%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR GR ++R + R + + GS LV+ G T +L TA L ++VP ++ GW+T
Sbjct: 2 MRHDGRTPQEIRPVRFERGFAAASAGSVLVRSGSTVILVTANLVDQVPPFLEGRGTGWLT 61
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEY MLP ST +R R + GR EIQR+IGR+LR++VDL LG R + +D DVIQ
Sbjct: 62 AEYAMLPGSTPSRKPR-----KVDGRCTEIQRLIGRSLRAMVDLERLGPRTLHLDADVIQ 116
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTAAIT A VA D L + +LKG +AA+S G++ G ++DLDY
Sbjct: 117 ADGGTRTAAITAACVATADALNKCLGA---EEARAILKGRLAAVSVGVVDGVGLLDLDYS 173
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
ED +VD N V +VEVQG+AE A F + +L+LA I L+ LQ D +
Sbjct: 174 EDVRAEVDLNVVRLGPRGLVEVQGTAEGAPFDRRRLEELLDLADQGIDRLMALQLDAVG 232
>gi|258652431|ref|YP_003201587.1| polynucleotide phosphorylase/polyadenylase [Nakamurella
multipartita DSM 44233]
gi|258555656|gb|ACV78598.1| guanosine pentaphosphate synthetase I/polyribonucleotide
nucleotidyltransferase [Nakamurella multipartita DSM
44233]
Length = 750
Score = 141 bits (355), Expect = 8e-32, Method: Composition-based stats.
Identities = 41/242 (16%), Positives = 81/242 (33%), Gaps = 9/242 (3%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
+R+ GR +R + GS L + G+T +L TL E+ +
Sbjct: 338 VRIDGRGLTDIRTLGAEVGYLPRVHGSALFERGETQILGVTTLNMLRMEQQLDTLAPENR 397
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P STG + + R+ G RAL V+ I
Sbjct: 398 KRYMHNYNFPPYSTGETGRVGSPKRREIGHGAL----AERALVPVLPTREEFPYAIRQVS 453
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+ + ++G T ++ + ++L + ++ + V A + + D
Sbjct: 454 EALGSNGSTSMGSVCASTLSLLNAGVPLKAAVAGIAMGLVSDTVTAEDGTSSVQYVALTD 513
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED+ D+D T + +Q + + L A+D ++ + +
Sbjct: 514 ILGAEDAFGDMDFKVAGTRQF-VTALQLDTKLDGIPSEVLRGALVQARDARFTILDVMHE 572
Query: 237 VI 238
I
Sbjct: 573 AI 574
Score = 60.2 bits (144), Expect = 2e-07, Method: Composition-based stats.
Identities = 39/220 (17%), Positives = 65/220 (29%), Gaps = 36/220 (16%)
Query: 34 DTHLLTTATLE----EKVPMWIRNTKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQE 89
DT LL+ ++ E+ + G +P S R GR +
Sbjct: 45 DTMLLSATSVGKHPKEQFDFFPLTIDVEERMYAAGRIPGSFFRR------EGRPSEDAIL 98
Query: 90 IQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSN 149
R+I R LR Q++I + D AI A +
Sbjct: 99 TCRLIDRPLRPTFTNGLRNEVQVVITVMALNPDDLYDVLAINAASASTQ----------- 147
Query: 150 KFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSG---HIVEVQGSA 206
G VA + ++ G + + E D +G I+ V+ A
Sbjct: 148 --ISGLPFSGPVAGVRVALIDGQWVAFPRHSELERAVFDMVVAGRLAGDDVAIMMVEAEA 205
Query: 207 ERATF----------SQDHFFAMLNLAKDRIADLIKLQKD 236
AT +++ L AK + L + Q +
Sbjct: 206 TTATVGLVAGGAVAPTEEVVAEGLEAAKPFLRVLCQAQNE 245
>gi|288921719|ref|ZP_06415986.1| guanosine pentaphosphate synthetase I/polyribonucleotide
nucleotidyltransferase [Frankia sp. EUN1f]
gi|288346891|gb|EFC81201.1| guanosine pentaphosphate synthetase I/polyribonucleotide
nucleotidyltransferase [Frankia sp. EUN1f]
Length = 729
Score = 141 bits (355), Expect = 8e-32, Method: Composition-based stats.
Identities = 40/243 (16%), Positives = 82/243 (33%), Gaps = 18/243 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKH 56
+R+ GR ++RE+S GS L + G+T +L TL E+ + +
Sbjct: 337 VRIDGRSTTEIRELSAEVDYIPRVHGSALFERGETQILGVTTLAMLRMEQTVDTLNPERT 396
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P STG + + R+ G RAL V+ I
Sbjct: 397 KRYMHNYNFPPYSTGETGRVGSPKRREIGHGAL----AERALLPVLPDREEFPYAIRQVS 452
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+ + ++G T ++ + ++L + ++ + + +G
Sbjct: 453 EALGSNGSTSMGSVCASTLSLLNAGVPLKAPVAGIAMGLIQEGDAFVTLTD--------- 503
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED+ D+D T + +Q + L A+ ++++ +
Sbjct: 504 ILGAEDAFGDMDFKVAGTRDF-VTALQLDTKLDGIPASVLAGALQQARAARLTILEVMAE 562
Query: 237 VIS 239
I
Sbjct: 563 AIG 565
Score = 91.1 bits (224), Expect = 1e-16, Method: Composition-based stats.
Identities = 43/245 (17%), Positives = 73/245 (29%), Gaps = 39/245 (15%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKHGWITAEYGML 66
R + +++ A GS + GDT +L+ T+ E++ + G +
Sbjct: 19 RTVRFETGRLARQAAGSVVAYLGDTMVLSATTVSRSPKEQLDFFPLTVDVEERMYAAGRI 78
Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
P S R GR + R+I R LR Q++ + +
Sbjct: 79 PGSFFRR------EGRPSEDAILTCRLIDRPLRPSFAKGLRNEIQVVATVLALDPETLYD 132
Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
AI A + G + A G + G I + E
Sbjct: 133 VVAINAASASTMLAG-------------LPFSGPIGATRVGFVDGEWIAFPTHAELERAT 179
Query: 187 VDANFVM-----TDSGHIVEVQGSAERATF----------SQDHFFAMLNLAKDRIADLI 231
D I+ V+ A T +++ A L AK I +L
Sbjct: 180 FDMVVAGRVLEDGSDVAIMMVEAEATPGTVGLLAGGSPAPTEEVVAAGLEAAKPAIRELC 239
Query: 232 KLQKD 236
+ Q +
Sbjct: 240 RAQSE 244
>gi|224283646|ref|ZP_03646968.1| polynucleotide phosphorylase/polyadenylase [Bifidobacterium bifidum
NCIMB 41171]
gi|313140799|ref|ZP_07802992.1| PnpA [Bifidobacterium bifidum NCIMB 41171]
gi|313133309|gb|EFR50926.1| PnpA [Bifidobacterium bifidum NCIMB 41171]
Length = 887
Score = 141 bits (355), Expect = 8e-32, Method: Composition-based stats.
Identities = 44/241 (18%), Positives = 82/241 (34%), Gaps = 14/241 (5%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +R +S + GS L + G+T +L TL E+ + +
Sbjct: 346 RIDGRGLRDIRTLSAEVDIVPRVHGSALFQRGETQILGVTTLNMLKMEQQIDALSGPQSK 405
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y M P STG + + R+ G +A+ V+ I +
Sbjct: 406 RYMHNYEMPPYSTGETGRVGSPKRREIGHGAL----AEKAIVPVLPNREEFPYAIRQVSE 461
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
I ++G T ++ + ++L ++ + V + G + D+
Sbjct: 462 AIGSNGSTSMGSVCASTLSLLAAGVPLKAPVAGIAMGLV-----SGDVDGQHVFKTLTDI 516
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED+ D+D T I +Q + D L A + ++ L +
Sbjct: 517 LGAEDAFGDMDFKVAGTSEF-ITALQLDTKLDGIPADILAGALQQAHEARTTILDLINEC 575
Query: 238 I 238
I
Sbjct: 576 I 576
Score = 71.4 bits (173), Expect = 1e-10, Method: Composition-based stats.
Identities = 36/247 (14%), Positives = 72/247 (29%), Gaps = 33/247 (13%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGD-THLLTTATLE----EKVPMWIRNTKHGWITAEYGM 65
R + +++ A+G+ D + +L+T T E + G
Sbjct: 21 RTLRFETGRLAQQADGAVAAYLDDDSMILSTTTAGSSPKENYDFFPLTVDVEEKMYAAGK 80
Query: 66 LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125
+P S R GR + R+I R LR + + Q++ I D
Sbjct: 81 IPGSFFRR------EGRPSSEAILACRIIDRPLRPLFPHTLRNEVQVVETVLSIDPDDAY 134
Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185
A+ A + E + +L+ + VA + G
Sbjct: 135 DVIALNAASASTMISGLPFEGPVSGVRLALIDGQWVAFPRWSERERAVFEIVVAGR---- 190
Query: 186 DVDANFVMTDSGHIVEVQGSAERATFS-----------QDHFFAMLNLAKDRIADLIKLQ 234
+ I ++ A + + ++ L AK I + + Q
Sbjct: 191 -----VIENGDVAIAMIEAGAGKNAWHLIYDEGQIKPDEEVVAQGLEAAKPFIKVICEAQ 245
Query: 235 KDVISNE 241
+ + +
Sbjct: 246 NE-LKEK 251
>gi|258648734|ref|ZP_05736203.1| polyribonucleotide nucleotidyltransferase [Prevotella tannerae ATCC
51259]
gi|260851047|gb|EEX70916.1| polyribonucleotide nucleotidyltransferase [Prevotella tannerae ATCC
51259]
Length = 768
Score = 141 bits (355), Expect = 9e-32, Method: Composition-based stats.
Identities = 48/243 (19%), Positives = 87/243 (35%), Gaps = 18/243 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHG 57
RL GRQ ++R I GS + G+T L T T L+EK+ + + +
Sbjct: 325 RLDGRQTTEIRPIWCEAGPLPMPHGSAIFTRGETQALATTTLGTRLDEKMIDDVLDKSYQ 384
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P STG + V R+ G RAL++ + + I D
Sbjct: 385 RFLLHYNFPPFSTGEAKAQRGVGRREIGHGHL----AWRALKNQIPAD--FPYTVRIVSD 438
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+++++G + A + ++L D M + + + G + D+
Sbjct: 439 ILESNGSSSMATVCAGTLSLLDAGVPMNRPVSGIAMGLIKN-------PGEEKYAILSDI 491
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T +G + Q + S + L AK ++ +
Sbjct: 492 LGDEDHLGDMDFKTTGTING-LTATQMDIKCDGLSYEILEKALMQAKAGREHILGKLTET 550
Query: 238 ISN 240
++
Sbjct: 551 LAE 553
Score = 102 bits (253), Expect = 5e-20, Method: Composition-based stats.
Identities = 35/239 (14%), Positives = 72/239 (30%), Gaps = 25/239 (10%)
Query: 3 LSGRQENQMREISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
GR IS+ ++K A+G+ +++ +T LL T +
Sbjct: 11 PDGRT------ISIETGKLAKQADGAIMLRLNNTMLLATVVAAKDAVPGTDFMPLQCDYK 64
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
E GR R++ RALR + + + I
Sbjct: 65 EKYSAAGRFP--GGFTKREGRASDYEILTSRLVDRALRPLFPSNYHAEVYVNITLFSADG 122
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
L + G ++ + + G +++ + +
Sbjct: 123 KDMPDA-------------LAGFAASAALAASDIPFDGPISEVRVARINGAYVINPTFEQ 169
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
D+D T+ +I+ V+ E + L A + I + +LQK+++
Sbjct: 170 LKQADMDIMVGATEE-NIMMVE--GEMDEVPESALLEALKAAHEAIKPMCRLQKELMKE 225
>gi|147669503|ref|YP_001214321.1| polynucleotide phosphorylase/polyadenylase [Dehalococcoides sp.
BAV1]
gi|187610294|sp|A5FQT2|PNP_DEHSB RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|146270451|gb|ABQ17443.1| Polyribonucleotide nucleotidyltransferase [Dehalococcoides sp.
BAV1]
Length = 720
Score = 141 bits (355), Expect = 9e-32, Method: Composition-based stats.
Identities = 45/244 (18%), Positives = 88/244 (36%), Gaps = 17/244 (6%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
+R++GR Q+R++ + GS L GDT ++ TL E + +
Sbjct: 311 IRVNGRGIKQLRQLDAETGLLPRVHGSALFTRGDTQVMAITTLGSLQESQQLDGLSAEDT 370
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P STG + + R+ G RAL ++ I +
Sbjct: 371 KRFMLHYNFAPFSTGEVKRSGSPGRREIGHGAL----AERALVPILPTPEEFPYTIRLVA 426
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
DV+ + G T ++ + ++L D ++ + + + I D
Sbjct: 427 DVVGSSGSTSMGSVCSSSLSLMDAGVPVKKAVAGISIGLI--------TGENGTYCTITD 478
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
++ ED+ D+D T G I +Q + S D + AK+ +++ +
Sbjct: 479 IEGIEDNYGDMDFKVAGTRDG-ITAIQVDMKVKGISFDIIRDAIYQAKEARYNILDVMDK 537
Query: 237 VISN 240
++
Sbjct: 538 ALAQ 541
Score = 90.3 bits (222), Expect = 2e-16, Method: Composition-based stats.
Identities = 38/231 (16%), Positives = 78/231 (33%), Gaps = 27/231 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKHGWITAEYGML 66
R++ + +++ A+ + +++ DT LL T E V + G +
Sbjct: 14 RKLVIESGKLARLADAAITIRYADTELLVTLCSAKKPREGVDFLPLTIDYEERMYAAGKI 73
Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
P R GR ++ R+ R LR ++ QIII +
Sbjct: 74 PGGFIRR------EGRPSEQAILAGRLTDRPLRPLLPKEWRNDLQIIITVIASDKENDAD 127
Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
+ G + +G V A G + G +++ + + +
Sbjct: 128 IWGVVG-------------ASTVLAMSEIPYEGPVGASRIGYINGEFVLNPTFAQLESSQ 174
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
+D V T +V ++ ++ +D + A +LI LQ ++
Sbjct: 175 LDLVVVSTRK-AVVMIEAGSKE--IPEDIMINAIEFAHKANQELIDLQDEI 222
>gi|227833344|ref|YP_002835051.1| polyribonucleotide nucleotidyltransferase [Corynebacterium
aurimucosum ATCC 700975]
gi|262184330|ref|ZP_06043751.1| polynucleotide phosphorylase/polyadenylase [Corynebacterium
aurimucosum ATCC 700975]
gi|257096677|sp|C3PH09|PNP_CORA7 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|227454360|gb|ACP33113.1| polyribonucleotide nucleotidyltransferase [Corynebacterium
aurimucosum ATCC 700975]
Length = 756
Score = 141 bits (355), Expect = 9e-32, Method: Composition-based stats.
Identities = 45/244 (18%), Positives = 88/244 (36%), Gaps = 14/244 (5%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKH 56
R+ GR +R++ + + A GS L + G+T +L TL+ E+ + +
Sbjct: 371 FRIDGRGVTDIRDLGVEVDLIPRAHGSSLFERGETQILGVTTLDMLKMEQQIDSLTPVES 430
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P STG + + R+ G RAL V+ I
Sbjct: 431 KRYMHHYNFPPYSTGETGRVGSPKRREIGHGAL----AERALLPVIPSREDFPYAIRQVS 486
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+ + ++G T ++ + ++L++ ++ + V + G + D
Sbjct: 487 EALGSNGSTSMGSVCASTLSLYNAGVPLKAPVAGIAMGLV-----SGEVNGKEKFVALTD 541
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED+ D+D T I +Q + L A+D A ++ +
Sbjct: 542 ILGAEDAFGDMDFKVAGTSEF-ITALQLDTKLDGIPSHVLADALEQARDARAAILDTMSE 600
Query: 237 VISN 240
VI +
Sbjct: 601 VIES 604
>gi|159028376|emb|CAO87274.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
Length = 717
Score = 141 bits (355), Expect = 9e-32, Method: Composition-based stats.
Identities = 45/246 (18%), Positives = 88/246 (35%), Gaps = 20/246 (8%)
Query: 1 MRLSGRQENQMREISLTRRVSKY-AEGSCLVKFGDTHLLTTATLE-----EKVPMWIRNT 54
+R+ GR+ +++R IS V GS L G T +L+ ATL + + +
Sbjct: 322 VRVDGRKLDEVRPISCLVGVLPRRVHGSGLFNRGLTQVLSIATLGTPGDAQDLGDDLHPE 381
Query: 55 KHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIII 114
Y P S G + R+ G RA+ V+ + +
Sbjct: 382 DEKRYLHHYNFPPFSVGETRPMRSPGRREIGHGAL----AERAIVPVLPPQEEFPYVLRV 437
Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPI 174
+V+ ++G T ++ G+ +AL D ++ + + + +G +
Sbjct: 438 VSEVLSSNGSTSMGSVCGSTLALMDAGVPLKKPVSGAAMGLIKEGEEV---------RIL 488
Query: 175 VDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
D+ ED D+D TDSG I +Q + + + + A +++
Sbjct: 489 TDIQGIEDFLGDMDFKVAGTDSG-ITALQMDMKIPGLTMEVVAKAIEQALPARKHILEKM 547
Query: 235 KDVISN 240
+
Sbjct: 548 LATLEK 553
Score = 103 bits (257), Expect = 2e-20, Method: Composition-based stats.
Identities = 49/235 (20%), Positives = 89/235 (37%), Gaps = 26/235 (11%)
Query: 10 QMREISLTRRV-SKYAEGSCLVKFGDTHLLTTAT---LEEKVPMWIRNTKHGWITAEYGM 65
R+I L + + A GS L++ G+T +L TAT E V + G
Sbjct: 11 DGRDIRLKIGLLAPQAGGSVLIQSGETAVLVTATTAKAREGVDFLPLTVDYEERLYAAGR 70
Query: 66 LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125
+P R GR ++ R+I R LR + Q++ + +
Sbjct: 71 IPGGFLRR------EGRPPEKAILTGRLIDRPLRPLFPSWLRDDIQVVATTLSMDEEVPP 124
Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185
A+TGA VA+ +G +AA+ G+L I++ Y E
Sbjct: 125 DVLAVTGASVAVLLAGI-------------PFQGPMAAVRVGLLGDEFIINPTYKEIHNG 171
Query: 186 DVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
++D + G +V ++ A + + ++ + + DLI Q+++I
Sbjct: 172 ELDLVVAGSPEG-VVMIEAGANQ--LPERDIIEAIDFGYEAVRDLITAQRELIDQ 223
>gi|168061313|ref|XP_001782634.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162665867|gb|EDQ52537.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 817
Score = 141 bits (355), Expect = 9e-32, Method: Composition-based stats.
Identities = 45/244 (18%), Positives = 82/244 (33%), Gaps = 11/244 (4%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
MR+ GR NQ+RE+ GS + G+T +L T T+ + + +
Sbjct: 396 MRVDGRGLNQVRELQCEAGTYPALHGSSVFSRGNTQVLCTVTIGAPDDAQRLDSLVGIDR 455
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P S + ++ R+ G +AL +++ + +
Sbjct: 456 KRFMVHYSFPPFSINEVGRTGGLNRREVGHGTL----AEKALVALLPPEEDFPYSVRVTS 511
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+ + +DG + A + G +AL D + + V + D
Sbjct: 512 ECLASDGSSSMATVCGGSLALMDAGIPLRSHVGAVSVGLVSVSDPETGRVTE--YRILTD 569
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T G I +Q + A L A ++ +
Sbjct: 570 ILGLEDHLGDMDFKIAGTKKG-ITAIQLDIKPAGIPLHILCEALEPALVGRTQILDFMEQ 628
Query: 237 VISN 240
VIS+
Sbjct: 629 VISS 632
Score = 73.0 bits (177), Expect = 3e-11, Method: Composition-based stats.
Identities = 35/197 (17%), Positives = 62/197 (31%), Gaps = 17/197 (8%)
Query: 13 EISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG 71
++S ++++A G+ +V G+T +L T + K E
Sbjct: 95 KMSFETGKLARFASGAVVVGVGETKVLVTVVADYKFDGGKDFLPLQVEYREKQYAQGKIP 154
Query: 72 NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAIT 131
G R R+I R++R + QII + D A+
Sbjct: 155 --ATFMRREGAPKERELLCGRLIDRSVRPLFPKGFFYDSQIIANVLCSDGDQDPDVLAVN 212
Query: 132 GAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANF 191
A A KG + + G + G IV+ + E S D++ +
Sbjct: 213 AASAA-------------LVISDIPWKGPIGCVRIGRVKGKFIVNPNMDEFSLSDLNLVY 259
Query: 192 VMTDSGHIVEVQGSAER 208
T V ++ A
Sbjct: 260 ACTAEKT-VMIETQARE 275
>gi|213693120|ref|YP_002323706.1| Polyribonucleotide nucleotidyltransferase [Bifidobacterium longum
subsp. infantis ATCC 15697]
gi|257096682|sp|B7GNH2|PNP_BIFLI RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|213524581|gb|ACJ53328.1| Polyribonucleotide nucleotidyltransferase [Bifidobacterium longum
subsp. infantis ATCC 15697]
gi|320459298|dbj|BAJ69919.1| polynucleotide phosphorylase/polyadenylase [Bifidobacterium longum
subsp. infantis ATCC 15697]
Length = 914
Score = 141 bits (355), Expect = 9e-32, Method: Composition-based stats.
Identities = 47/241 (19%), Positives = 86/241 (35%), Gaps = 14/241 (5%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +R +S + GS L + G+T +L TL E+ + +
Sbjct: 346 RIDGRGLRDIRTLSAEVDIVPRVHGSALFQRGETQILGVTTLNMLKMEQQIDALSGPQSK 405
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y M P STG + + R+ G +AL V+ I +
Sbjct: 406 RYMHNYEMPPYSTGETGRVGSPKRREIGHGAL----AEKALVPVLPSREEFPYAIRQVSE 461
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
I ++G T ++ + ++L ++ + V + G + D+
Sbjct: 462 AIGSNGSTSMGSVCASTLSLLAAGVPLKAPVAGIAMGLV-----SGDVDGQHIFKTLTDI 516
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED+ D+D T I +Q + D A L AK+ A ++++ +
Sbjct: 517 LGAEDAFGDMDFKVAGTSEF-ITALQLDTKLDGIPADILAAALQQAKEARATILEVINEC 575
Query: 238 I 238
I
Sbjct: 576 I 576
Score = 68.3 bits (165), Expect = 1e-09, Method: Composition-based stats.
Identities = 36/242 (14%), Positives = 70/242 (28%), Gaps = 32/242 (13%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGD-THLLTTATLE----EKVPMWIRNTKHGWITAEYGM 65
R + +++ A+G+ D + +L+T T E + G
Sbjct: 21 RTLRFETGRLAQQADGAVAAYLDDDSMILSTTTAGSSPKENYDFFPLTVDVEEKMYAAGK 80
Query: 66 LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125
+P S R GR + R+I R LR + + Q++ + D
Sbjct: 81 IPGSFFRR------EGRPSSEAILACRIIDRPLRPLFPHTLRNEVQVVETVLAVNPDDAY 134
Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185
A+ A + E + +L+ + VA + G
Sbjct: 135 DVIALNAASASTMISGLPFEGPVSGVRLALIDGQWVAFPRWSERERAVFEIVVAGR---- 190
Query: 186 DVDANFVMTDSGHIVEVQGSAERATFS-----------QDHFFAMLNLAKDRIADLIKLQ 234
V I ++ A + + ++ L AK I + + Q
Sbjct: 191 -----VVENGDVAIAMIEAGAGKNAWHLIYDEGQTKPDEEVVAGGLEAAKPFIKVICEAQ 245
Query: 235 KD 236
+
Sbjct: 246 DE 247
>gi|225018458|ref|ZP_03707650.1| hypothetical protein CLOSTMETH_02405 [Clostridium methylpentosum
DSM 5476]
gi|224948767|gb|EEG29976.1| hypothetical protein CLOSTMETH_02405 [Clostridium methylpentosum
DSM 5476]
Length = 722
Score = 141 bits (354), Expect = 9e-32, Method: Composition-based stats.
Identities = 46/249 (18%), Positives = 84/249 (33%), Gaps = 22/249 (8%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +++R ++ + GS L G T +L+ ATL +E+ I
Sbjct: 334 RVDGRGMDEIRPLAAEVGLLPRVHGSGLFTRGQTQVLSIATLGPVSDEQRLDGIDENTFK 393
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y S G R+ G RAL V+ I + +
Sbjct: 394 RYMHNYNFPSYSVGETKPSRGPGRREIGHGAL----AERALVPVLPSEEEFPYAIRVVSE 449
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
V+ ++G T +I G+ +AL D ++ + +G +VD+
Sbjct: 450 VLSSNGSTSQGSICGSTLALMDAGVPIKAPVAGISCGLITEGD---------RFMTMVDI 500
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI-KLQKD 236
ED D+D T G I +Q + + + + ++ ++
Sbjct: 501 QGLEDFFGDMDFKVGGTHKG-ITAIQVDIKIDGLTPEIIAEAFEKTRKARLYILDEIMLK 559
Query: 237 VI---SNEV 242
+ EV
Sbjct: 560 ALHKPREEV 568
Score = 103 bits (257), Expect = 2e-20, Method: Composition-based stats.
Identities = 44/245 (17%), Positives = 83/245 (33%), Gaps = 31/245 (12%)
Query: 6 RQENQM---REISLTRRVSKY-AEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKHG 57
R M RE+ + + A GSC V++G+T ++ T+ E V + + +
Sbjct: 25 RTFQTMFAGRELIVETGKTSELANGSCWVRYGETVVMANVTMSAKPREGVDFFPLSVDYE 84
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
G +P S R R R+ R+I R +R + ++
Sbjct: 85 EKLYAVGKIPGSFLKR------ESRPSERAILTSRVIDRPIRPLFPKDMRNDVSVVATVL 138
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
D A+T +A G VA++S G++ G +++
Sbjct: 139 ATDVDNSPEVVAMTAVAIA-------------ISISDIPWNGPVASVSVGLVDGKFVLNP 185
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
+ E + D+D + IV ++ A + + + +I +
Sbjct: 186 NIEERAKSDLDLTVASSGE-KIVMIEAGANE--VDDKTMLDAIMTGHEELKHIIDFINE- 241
Query: 238 ISNEV 242
I EV
Sbjct: 242 IKAEV 246
>gi|187610336|sp|A0PQE7|PNP_MYCUA RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
Length = 762
Score = 141 bits (354), Expect = 9e-32, Method: Composition-based stats.
Identities = 44/242 (18%), Positives = 82/242 (33%), Gaps = 10/242 (4%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKH 56
R+ GR +R +S + A GS L + G+T +L TL+ + +
Sbjct: 351 FRIDGRGVTDIRALSAEVALVPRAHGSALFERGETQILGVTTLDMVKMAQQIDSLGPETT 410
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P STG + + R+ G RAL V+ I
Sbjct: 411 KRYMHHYNFPPFSTGETGRVGSPKRREIGHGAL----AERALMPVLPSVEEFPYAIRQVS 466
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+ + ++G T ++ + +AL + ++ + V V + D
Sbjct: 467 EALGSNGSTSMGSVCASTLALLNAGVPLKAPVAGIAMGLVSD-DVEVDGKTERRFVTLTD 525
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED+ D+D T + +Q + L AKD ++++ +
Sbjct: 526 ILGAEDAFGDMDFKVAGTKDF-VTALQLDTKLDGIPSQVLAGALAQAKDARLTILEVMAE 584
Query: 237 VI 238
I
Sbjct: 585 AI 586
>gi|118617705|ref|YP_906037.1| polynucleotide phosphorylase/polyadenylase [Mycobacterium ulcerans
Agy99]
gi|118569815|gb|ABL04566.1| bifunctional protein polyribonucleotide nucleotidyltransferase GpsI
[Mycobacterium ulcerans Agy99]
Length = 753
Score = 141 bits (354), Expect = 9e-32, Method: Composition-based stats.
Identities = 44/242 (18%), Positives = 82/242 (33%), Gaps = 10/242 (4%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKH 56
R+ GR +R +S + A GS L + G+T +L TL+ + +
Sbjct: 342 FRIDGRGVTDIRALSAEVALVPRAHGSALFERGETQILGVTTLDMVKMAQQIDSLGPETT 401
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P STG + + R+ G RAL V+ I
Sbjct: 402 KRYMHHYNFPPFSTGETGRVGSPKRREIGHGAL----AERALMPVLPSVEEFPYAIRQVS 457
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+ + ++G T ++ + +AL + ++ + V V + D
Sbjct: 458 EALGSNGSTSMGSVCASTLALLNAGVPLKAPVAGIAMGLVSD-DVEVDGKTERRFVTLTD 516
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED+ D+D T + +Q + L AKD ++++ +
Sbjct: 517 ILGAEDAFGDMDFKVAGTKDF-VTALQLDTKLDGIPSQVLAGALAQAKDARLTILEVMAE 575
Query: 237 VI 238
I
Sbjct: 576 AI 577
>gi|292670908|ref|ZP_06604334.1| polyribonucleotide nucleotidyltransferase [Selenomonas noxia ATCC
43541]
gi|292647529|gb|EFF65501.1| polyribonucleotide nucleotidyltransferase [Selenomonas noxia ATCC
43541]
Length = 700
Score = 141 bits (354), Expect = 9e-32, Method: Composition-based stats.
Identities = 47/242 (19%), Positives = 91/242 (37%), Gaps = 18/242 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56
+R GR +++R +S + A GS L G T +LT T +E++ + +
Sbjct: 321 IRPDGRALDEIRPVSCEVGILPRAHGSGLFTRGQTQVLTVTTLGSIGDEQIIDGLGSETT 380
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
+Y S G + R+ G RAL ++ I +
Sbjct: 381 KHYLHQYNFPGYSVGEARPMRSPGRREIGHGAL----AERALFPMIPSIEEFPYTIRLVS 436
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
++++++G + +I G+ ++L ++ + + V G +I
Sbjct: 437 EILESNGSSSMGSICGSTLSLMCAGVPIKRPVSGIAMGLVRDGDNYSILTD--------- 487
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED+ D+D T G I +Q + A ++D A L AK A ++ +
Sbjct: 488 IQGMEDALGDMDFKVAGTSKG-ITAIQMDIKIAGITRDILAAALAQAKQGRAFILGKMLE 546
Query: 237 VI 238
I
Sbjct: 547 CI 548
Score = 103 bits (256), Expect = 2e-20, Method: Composition-based stats.
Identities = 44/231 (19%), Positives = 85/231 (36%), Gaps = 27/231 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKHGWITAEYGML 66
R++ + ++K A G+ LV++GDT +L TAT E V + + G +
Sbjct: 22 RKLVIEHGKMAKQANGAVLVRYGDTVVLVTATASSAPREGVDFFPLTVDYEEKMYAVGKI 81
Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
P R GR + R+I R +R + QI+ ++ D
Sbjct: 82 PGGFIKR------EGRPSNDAILCARLIDRPIRPLFPDGFRNDVQIVATVLSVEQDNPPE 135
Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
AA+ GA A G +A + G + G I++ + S +
Sbjct: 136 IAAMIGASCA-------------LTVSDIPFMGPIAGVRVGYIDGEFIINPTEQQRSVSE 182
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
++ + ++ V+ A S++ + I L++ Q+++
Sbjct: 183 LNLAVAGSYD-AVMMVEAGANE--LSEEVVLDAILFGHAEIRRLVEFQQNI 230
>gi|251781688|ref|YP_002995990.1| polynucleotide phosphorylase/polyadenylase [Streptococcus
dysgalactiae subsp. equisimilis GGS_124]
gi|242390317|dbj|BAH80776.1| polyribonucleotide nucleotidyltransferase [Streptococcus
dysgalactiae subsp. equisimilis GGS_124]
Length = 714
Score = 141 bits (354), Expect = 9e-32, Method: Composition-based stats.
Identities = 42/244 (17%), Positives = 81/244 (33%), Gaps = 18/244 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56
+R GR+ +++R + G L G T L+ T E ++ +
Sbjct: 317 IRPDGRKIDEIRPLDAEVDFLPKVHGLGLFTRGQTQALSVLTLAPMGETQIIDGLAPEYK 376
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y S G + A R+ G RAL V+ I +
Sbjct: 377 KRFLHHYNFPQYSVGETGRYGAAGRREIGHGALG----ERALEQVLPSLEEFPYAIRLVA 432
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V++++G + A+I +AL ++ + + + D
Sbjct: 433 EVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISD---------GTNYTVLTD 483
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T G I +Q + A + L AK +++ + ++
Sbjct: 484 IQGLEDHFGDMDFKVAGTREG-ITALQMDIKIAGITPQILEEALAQAKKARFEILDVIEE 542
Query: 237 VISN 240
I+
Sbjct: 543 TIAE 546
Score = 103 bits (257), Expect = 2e-20, Method: Composition-based stats.
Identities = 41/231 (17%), Positives = 82/231 (35%), Gaps = 26/231 (11%)
Query: 13 EISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKV---PMWIRNTKHGWITAEYGMLPR 68
+ + V+K A G+ +V++G++ +LT A + +K+ + + G P
Sbjct: 14 PLVVEVGQVAKQANGATVVRYGESTVLTAAVMSKKMATGDFFPLQVNYEEKMYAAGKFPG 73
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
R GR + R+I R +R + Q+I + A
Sbjct: 74 GFMKR------EGRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDENASAPMA 127
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+ G+ +A G +A + G + G I++ D + ++
Sbjct: 128 AMFGSSLA-------------LSISDIPFNGPIAGVQVGYIDGEFIINPDKEQMEASLLE 174
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
+ I V+ A+ S+D L I +LI Q+ +++
Sbjct: 175 LTVAGSKE-AINMVESGAKE--LSEDIMLEALLKGHQAIQELIAFQEQIVA 222
>gi|32473863|ref|NP_866857.1| ribonuclease PH [Rhodopirellula baltica SH 1]
gi|61216016|sp|Q7URE2|RNPH_RHOBA RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|32444399|emb|CAD74398.1| ribonuclease PH [Rhodopirellula baltica SH 1]
Length = 246
Score = 141 bits (354), Expect = 9e-32, Method: Composition-based stats.
Identities = 104/236 (44%), Positives = 141/236 (59%), Gaps = 4/236 (1%)
Query: 6 RQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGM 65
R +Q+R + + + S L K G T +L TA++E VP W+ GW+TAEY M
Sbjct: 9 RPHDQIRPVEIECGYLESNPASVLYKSGKTIVLCTASVETNVPPWMEGRGKGWVTAEYNM 68
Query: 66 LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125
LP ST R +R+ SG+ GR+ EIQR+IGR+LR++VDL ALG R I +DCDV+QADGGT
Sbjct: 69 LPGSTSPRKRRDR-SGKVDGRTTEIQRLIGRSLRAIVDLHALGERSITVDCDVLQADGGT 127
Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVL---KGHVAAISCGMLCGYPIVDLDYGED 182
RTA+ITG ++AL + + + VAAIS G++ ++DLDY D
Sbjct: 128 RTASITGGYIALSLAVSQLAAIPELDPPVDPTAVLRDSVAAISVGVIGEDVVLDLDYRLD 187
Query: 183 STIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
S DVD N +MT SG +E+QG+ E ATF +L L K IA+L KLQK +
Sbjct: 188 SAADVDMNVIMTGSGRFIELQGTGEEATFDDVQLAELLRLGKIGIAELTKLQKAQL 243
>gi|302852014|ref|XP_002957529.1| hypothetical protein VOLCADRAFT_107702 [Volvox carteri f.
nagariensis]
gi|300257171|gb|EFJ41423.1| hypothetical protein VOLCADRAFT_107702 [Volvox carteri f.
nagariensis]
Length = 830
Score = 141 bits (354), Expect = 9e-32, Method: Composition-based stats.
Identities = 42/252 (16%), Positives = 87/252 (34%), Gaps = 20/252 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL---------EEKVPMWI 51
+R GR+ +R I+ + GS L G+T + ATL +
Sbjct: 354 IRADGRRVTDIRPIASRAGLLPRTHGSALFTRGETQAICVATLGTASDALRADTMRKAEE 413
Query: 52 RNTKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQ 111
+ G +Y P S G + R+ G + RAL +V
Sbjct: 414 DDGGEGRFYLQYHFPPSSVGETGRVGGPGRRELGHGEL----AQRALAPIVPNQEQFPYT 469
Query: 112 IIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKG------HVAAIS 165
+ ++ + +++G + A++ G +AL D + + +L+ +
Sbjct: 470 VRLESTITESNGSSSMASVCGGCLALQDAGVPILRPVAGIAMGLILEPAAQNPDPESGSG 529
Query: 166 CGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKD 225
+ D+ ED+ D+D D+ I Q + + + + LN A++
Sbjct: 530 SSSPRHVVLSDILGSEDALGDMDFKVAG-DTDSITAFQMDIKVEGITLEIMSSALNQARE 588
Query: 226 RIADLIKLQKDV 237
+++ +
Sbjct: 589 GRRHILQQMERC 600
Score = 62.9 bits (151), Expect = 3e-08, Method: Composition-based stats.
Identities = 25/208 (12%), Positives = 53/208 (25%), Gaps = 17/208 (8%)
Query: 29 LVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQ 88
+ G+T + TA + + GR
Sbjct: 1 MATCGETMIYATACCS--ASPTGDGSFLPLTVNYAERFSAAGRTSGGYVKRDGRPRDSEV 58
Query: 89 EIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCS 148
+ R++ R LR + Q++ AIT A AL ++
Sbjct: 59 LVSRLVDRPLRPMFGKGWANETQVLEWVLSYDGIHNPEPIAITAAAAALLISDIPLKKAV 118
Query: 149 NKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAER 208
++ + +V+ + +D T I+ ++
Sbjct: 119 AGVRVGL------------LPDEGYVVNPTVEQMKVSRLDLMVAGTRD-AILMIE--GFC 163
Query: 209 ATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+++ L + I L +D
Sbjct: 164 DFLTEEQMIEALAVGSQAITSLCLQMED 191
>gi|324997302|ref|ZP_08118414.1| ribonuclease PH [Pseudonocardia sp. P1]
Length = 245
Score = 141 bits (354), Expect = 1e-31, Method: Composition-based stats.
Identities = 107/225 (47%), Positives = 150/225 (66%), Gaps = 1/225 (0%)
Query: 14 ISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGNR 73
+++TR K+ GS LV+FGDT +L A++ E VP W + + GW+TAEY MLP ST R
Sbjct: 1 MTITRGFQKHPAGSVLVEFGDTKVLCAASVTEGVPRWRKGSGLGWVTAEYAMLPSSTDTR 60
Query: 74 VKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGA 133
RE+V G+ GGR+ EI R+IGR+LR+ +DL ALG I IDCDV+QADGGTRTAAITGA
Sbjct: 61 SSRESVKGKIGGRTHEISRLIGRSLRACIDLRALGENTIAIDCDVLQADGGTRTAAITGA 120
Query: 134 WVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVM 193
+VAL D + + + K + + VAA+S G++ G +DL Y EDS +VD N V
Sbjct: 121 YVALCDAVTWLGEHG-KLTDPKPISCQVAAVSVGVVDGRVRLDLPYEEDSRAEVDTNVVA 179
Query: 194 TDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
T++G ++EVQG+ E ATF++ AML+ A IA + ++Q + +
Sbjct: 180 TETGTLIEVQGTGEGATFARKTLDAMLDSALAGIAGIARMQIEAL 224
>gi|21228725|ref|NP_634647.1| exosome complex exonuclease 1 [Methanosarcina mazei Go1]
gi|29336795|sp|Q8PTT8|ECX1_METMA RecName: Full=Probable exosome complex exonuclease 1
gi|20907234|gb|AAM32319.1| Ribonuclease [Methanosarcina mazei Go1]
Length = 493
Score = 141 bits (354), Expect = 1e-31, Method: Composition-based stats.
Identities = 60/242 (24%), Positives = 103/242 (42%), Gaps = 22/242 (9%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKV-PMWIRNTKHGWI 59
+RL GR+ +++R + + V A+GSC +++G +L + P + I
Sbjct: 16 LRLDGRRADEIRPMKIEVGVLSRADGSCYLEWGRNKILVGVFGPREAHPRRSQRADSAVI 75
Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119
Y M S +R + RS EI ++ A V+ I I +V+
Sbjct: 76 RYRYNMASFSVEDRARPG-----PSRRSIEISKVSREAFEPVIMAELFPKTAIDIFVEVL 130
Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179
QAD GTRTAAI + +AL D +KG + + + G + G ++DL+
Sbjct: 131 QADAGTRTAAINASSIALADAGI-------------PMKGLITSCAFGKVDGKIVLDLNK 177
Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
ED+ + D MT G I +Q + D L L K +++++Q+ V+
Sbjct: 178 EEDNYGEADFPVAMTQDGEITLIQMDGN---LTPDEIKQGLELVKKGCKEILEIQQAVLR 234
Query: 240 NE 241
+
Sbjct: 235 KK 236
>gi|94984509|ref|YP_603873.1| polynucleotide phosphorylase/polyadenylase [Deinococcus
geothermalis DSM 11300]
gi|122986710|sp|Q1J1D0|PNP_DEIGD RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|94554790|gb|ABF44704.1| Polyribonucleotide nucleotidyltransferase [Deinococcus geothermalis
DSM 11300]
Length = 721
Score = 141 bits (354), Expect = 1e-31, Method: Composition-based stats.
Identities = 46/242 (19%), Positives = 90/242 (37%), Gaps = 18/242 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+R GR +R I + R A GS + G+T +L TL + + + G
Sbjct: 318 LRADGRNSKTVRPIWIEARPLPRAHGSAIFTRGETQVLGVTTLGTERDELLVDNLTGETN 377
Query: 61 A----EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P STG + S R+ G RA+R+V+ I +
Sbjct: 378 DRFLLHYNFPPYSTGEVKRVGGQSRREVGHGNL----AKRAIRAVLPAFDDFPYVIRVVG 433
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V++++G + A + ++L D ++ + V++G + D
Sbjct: 434 EVLESNGSSSMATVCAGTLSLMDAGVPIQAPVAGVAMGLVMEGE---------QYRILTD 484
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED+ D+D T G + +Q + + + L A++ ++ +
Sbjct: 485 ILGLEDALGDMDFKVCGTAEG-VTALQMDIKVSGVTPAIMREALAQAREARLHILGKMAE 543
Query: 237 VI 238
V+
Sbjct: 544 VL 545
Score = 96.5 bits (238), Expect = 3e-18, Method: Composition-based stats.
Identities = 46/237 (19%), Positives = 79/237 (33%), Gaps = 29/237 (12%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKV---PMWIRNTKHGWITAEYGMLP 67
RE+S+ ++K A GS +++GDT LL TA E+ + G +P
Sbjct: 13 RELSIETGKLAKLASGSVTLRYGDTLLLVTAQAREERSTLDFLPLTVEFEERHYAVGRIP 72
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
S R GR G + R+ R +R + Q+II
Sbjct: 73 GSFHRR------EGRPGEHAILSARITDRQIRPLFPKGYRQETQVIITVLSADQQNAPDV 126
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
GA A G A + GM+ G +++ + + +
Sbjct: 127 LGAIGASAA-------------LSLSDIPWNGPTACVRVGMIDGEYVINPTSDQLTRSSL 173
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAK---DRIADLIKLQKDVISNE 241
D T + V+ A+ S++ + A + DLI+ + + E
Sbjct: 174 DLVVAGTRD-AVNMVEAGAQG--VSEETLVGAIEFAHRELQGVLDLIETMRAEVGRE 227
>gi|108804255|ref|YP_644192.1| polynucleotide phosphorylase/polyadenylase [Rubrobacter
xylanophilus DSM 9941]
gi|123069114|sp|Q1AW48|PNP_RUBXD RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|108765498|gb|ABG04380.1| Polyribonucleotide nucleotidyltransferase [Rubrobacter xylanophilus
DSM 9941]
Length = 686
Score = 141 bits (354), Expect = 1e-31, Method: Composition-based stats.
Identities = 45/243 (18%), Positives = 86/243 (35%), Gaps = 18/243 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEE----KVPMWIRNTKHG 57
R R +++R + V G+ L G+T +L++ L + + +
Sbjct: 307 RTDLRAFDEIRPTTAEAHVLPRVHGTGLFTRGETQVLSSLALADLGLVQRLDTLEPQTTK 366
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P STG + R+ G RAL V+ I I +
Sbjct: 367 RYMHHYYFPPYSTGETGRLGPPRRREIGHGAL----AERALLPVIPSEEEFPYAIRIISE 422
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
V++++G + A++ G+ +AL D ++ + V +G I +
Sbjct: 423 VLESNGSSSMASVCGSTLALMDGGVPIKAPVAGVAMGLVKEGDDYVILTD---------I 473
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T G I +Q + S + L A+ ++ + ++
Sbjct: 474 QGLEDHMGDMDFKVAGTRDG-ITALQMDMKITGVSAELLKEALEQARRGRLQILDIMREE 532
Query: 238 ISN 240
I+
Sbjct: 533 IAE 535
Score = 90.7 bits (223), Expect = 2e-16, Method: Composition-based stats.
Identities = 42/236 (17%), Positives = 77/236 (32%), Gaps = 28/236 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRN----TKHGWITAEYGML 66
R I L +++ A G+ +FGDT +L+TAT E+ + G +
Sbjct: 10 RAIVLETGKLARQAGGAVTARFGDTTVLSTATRSEEPRPGATFLPLSVDIEERMSSAGKI 69
Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
P R G+ ++ R+ R +R + Q+I V +
Sbjct: 70 PGGFLKR------EGKPSEKAILTARLTDRPIRPLFPKDYYYEVQVIGTVLVADQENPYD 123
Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG-YPIVDLDYGEDSTI 185
++ GA A G + A+ G I++ Y +
Sbjct: 124 VVSMVGASAA-------------LALSDIPFGGPIGAVRVGRHPDGGFILNPTYQQLEES 170
Query: 186 DVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
D+D T I V+ A ++D L +A+ I + + + +
Sbjct: 171 DLDIVVAGTKE-AITMVEAGARE--VTEDVVVEALEVAQGVIREQAEAIERWAAEH 223
>gi|297243010|ref|ZP_06926948.1| polyribonucleotide nucleotidyltransferase [Gardnerella vaginalis
AMD]
gi|296889221|gb|EFH27955.1| polyribonucleotide nucleotidyltransferase [Gardnerella vaginalis
AMD]
Length = 920
Score = 141 bits (354), Expect = 1e-31, Method: Composition-based stats.
Identities = 46/241 (19%), Positives = 84/241 (34%), Gaps = 14/241 (5%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +R +S V GS L + G+T +L TL E+ + +
Sbjct: 346 RIDGRGLRDIRTLSAEVDVVPRVHGSALFQRGETQILGVTTLNMLKMEQQVDALSGPQTK 405
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y M P STG + + R+ G +AL V+ I +
Sbjct: 406 RYMHNYEMPPYSTGETGRVGSPKRREIGHGAL----AEKALVPVLPGREEFPYAIRQVSE 461
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
I ++G T ++ + ++L ++ + V + G + D+
Sbjct: 462 AIGSNGSTSMGSVCASTLSLLAAGVPLKAPVAGIAMGLV-----SGDVDGKHIFKTLTDI 516
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED+ D+D T I +Q + D A L A + ++++ +
Sbjct: 517 LGAEDAFGDMDFKVAGTSEF-ITALQLDTKLDGIPADILAAALQQAHEARTTILEVINEC 575
Query: 238 I 238
I
Sbjct: 576 I 576
Score = 66.8 bits (161), Expect = 3e-09, Method: Composition-based stats.
Identities = 36/242 (14%), Positives = 68/242 (28%), Gaps = 32/242 (13%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGD-THLLTTATLE----EKVPMWIRNTKHGWITAEYGM 65
R + +++ A+G+ D + +L+T T E + G
Sbjct: 21 RTLRFETGRLAQQADGAVAAYLDDDSMILSTTTAGSSPKENYDFFPLTVDVEEKMYAAGK 80
Query: 66 LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125
+P S R GR + R+I R LR + + Q++ I D
Sbjct: 81 IPGSFFRR------EGRPSNEATLACRIIDRPLRPLFPHTLRNEVQVVETILAINPDDAY 134
Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185
A+ A + E + +L+ + VA + G
Sbjct: 135 DVIALNAASASTMISGLPFEGPVSGVRLALIDGQWVAFPRWSERERAVFEIVVAGR---- 190
Query: 186 DVDANFVMTDSGHIVEVQGSAERATF-----------SQDHFFAMLNLAKDRIADLIKLQ 234
+ I ++ A + + + L AK I + Q
Sbjct: 191 -----VIENGDVAIAMIEAGAGKNAWNLIYNDGQTKPDEQVVAGGLEAAKPFIKVICDAQ 245
Query: 235 KD 236
+
Sbjct: 246 NE 247
>gi|183981938|ref|YP_001850229.1| bifunctional protein polyribonucleotide nucleotidyltransferase GpsI
[Mycobacterium marinum M]
gi|226702666|sp|B2HKV3|PNP_MYCMM RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|183175264|gb|ACC40374.1| bifunctional protein polyribonucleotide nucleotidyltransferase GpsI
[Mycobacterium marinum M]
Length = 762
Score = 141 bits (354), Expect = 1e-31, Method: Composition-based stats.
Identities = 44/242 (18%), Positives = 82/242 (33%), Gaps = 10/242 (4%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKH 56
R+ GR +R +S + A GS L + G+T +L TL+ + +
Sbjct: 351 FRIDGRGITDIRALSAEVALVPRAHGSALFERGETQILGVTTLDMVKMAQQIDSLGPETT 410
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P STG + + R+ G RAL V+ I
Sbjct: 411 KRYMHHYNFPPFSTGETGRVGSPKRREIGHGAL----AERALMPVLPSVEEFPYAIRQVS 466
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+ + ++G T ++ + +AL + ++ + V V + D
Sbjct: 467 EALGSNGSTSMGSVCASTLALLNAGVPLKAPVAGIAMGLVSD-DVEVDGKTERRFVTLTD 525
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED+ D+D T + +Q + L AKD ++++ +
Sbjct: 526 ILGAEDAFGDMDFKVAGTKDF-VTALQLDTKLDGIPSQVLAGALAQAKDARLTILEVMAE 584
Query: 237 VI 238
I
Sbjct: 585 AI 586
>gi|291542944|emb|CBL16054.1| polyribonucleotide nucleotidyltransferase [Ruminococcus bromii
L2-63]
Length = 739
Score = 141 bits (354), Expect = 1e-31, Method: Composition-based stats.
Identities = 45/244 (18%), Positives = 84/244 (34%), Gaps = 19/244 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR + +R ++ V GS + G T +LT ATL ++++ I
Sbjct: 320 RVDGRGMDDIRPLASEVGVIPRVHGSGMFTRGQTQVLTIATLGPVSDKQLLDGIDGETEK 379
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y S G R+ G RAL V+ + + +
Sbjct: 380 RYIHHYNFPSYSVGETKPSRGPGRREIGHGAL----AERALVPVIPSVEEFPYALRLVSE 435
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
V+ ++G T +I G+ +AL D ++ + +G +VD+
Sbjct: 436 VLSSNGSTSQGSICGSTLALMDAGVPIKAPVAGISCGLITEGD---------RWMTMVDI 486
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI-KLQKD 236
ED D+D T G I +Q + + + + L ++ ++
Sbjct: 487 QGLEDFFGDMDFKVAGTHDG-ITAIQMDLKISGLTPEMVKEALAKTHKARNYILDEVMLK 545
Query: 237 VISN 240
I+
Sbjct: 546 AIAE 549
Score = 96.1 bits (237), Expect = 4e-18, Method: Composition-based stats.
Identities = 45/236 (19%), Positives = 80/236 (33%), Gaps = 28/236 (11%)
Query: 12 REISLTRRVSKY-AEGSCLVKFGDTHLLTTATLEEK----VPMWIRNTKHGWITAEYGML 66
R + + A G+CLV +GDT + T EK V + + + G +
Sbjct: 20 RPLKVETGKMTQLANGACLVHYGDTTVHVAVTASEKPREGVDFFPLSVDYEEKMYAVGKI 79
Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
P S R GR ++ R+I R +R + D S I+ + D
Sbjct: 80 PGSYLKR------EGRPSEKAILTSRVIDRPIRPLFDKSMRNDVSIVCTVMSVDPDCQPE 133
Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
A+ GA +A G ++ S GM+ G I++ +
Sbjct: 134 IVAMIGASIA-------------ISISDVPWNGPISGCSVGMIDGEYIINPTEEQRKVSQ 180
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNEV 242
+ T + I ++ A S D + + + +I ++ I E+
Sbjct: 181 MATTVASTST-RIAMIEAGA--NCVSDDDMYNAIMAGHEANQKIISFIEE-IKAEI 232
>gi|78185360|ref|YP_377795.1| polynucleotide phosphorylase/polyadenylase [Synechococcus sp.
CC9902]
gi|123580765|sp|Q3AV44|PNP_SYNS9 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|78169654|gb|ABB26751.1| RNA binding S1 [Synechococcus sp. CC9902]
Length = 721
Score = 141 bits (354), Expect = 1e-31, Method: Composition-based stats.
Identities = 45/242 (18%), Positives = 89/242 (36%), Gaps = 19/242 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKY-AEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
R+ GR +++R+IS V GS L + G T +L+TATL + + +
Sbjct: 323 RVDGRGLDEVRQISAMAGVLPRRVHGSGLFQRGLTQVLSTATLGTPSDAQEMDDLHPNTE 382
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P S G + R+ G RA+ V+ + +
Sbjct: 383 KLYLHHYNFPPYSVGETRPMRSPGRREIGHGAL----AERAILPVLPEKDTFPYVVRVVS 438
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V+ ++G T ++ G+ +AL D ++ + + + +G + D
Sbjct: 439 EVLSSNGSTSMGSVCGSTLALMDAGVPLKAPVSGAAMGLIKEGKDI---------KILTD 489
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D ++ G I +Q + +N A+ +++ +
Sbjct: 490 IQGIEDFLGDMDFKVAGSEKG-ITALQMDMKITGLPVKVMAEAVNQARPARLHILEKMLE 548
Query: 237 VI 238
I
Sbjct: 549 AI 550
Score = 114 bits (284), Expect = 1e-23, Method: Composition-based stats.
Identities = 53/235 (22%), Positives = 89/235 (37%), Gaps = 26/235 (11%)
Query: 10 QMREISLTRR-VSKYAEGSCLVKFGDTHLLTTAT---LEEKVPMWIRNTKHGWITAEYGM 65
REI LT + A GS LV+ GDT +L TAT + + + G
Sbjct: 11 DGREIRLTTGRFAPQAGGSVLVECGDTAVLVTATRSKGRDGIDFLPLICDYEERLYAAGR 70
Query: 66 LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125
+P S R R R+ R+I R +R + Q++ C + +
Sbjct: 71 IPGSYMRR------EARPPERATLTCRLIDRPMRPLFPSWMRDDLQVVATCLSLDERVPS 124
Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185
A+TGA +A G +AA+ G+L +++ Y E
Sbjct: 125 DVLAVTGASIATLLAGI-------------PFNGPMAAVRVGLLGDDFVLNPSYREIERG 171
Query: 186 DVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
D+D T G +V V+ A + + ++ + I +LIK Q+ ++ +
Sbjct: 172 DLDLVVAGTADG-VVMVEAGANQ--LPEGDVIEAIDFGYEAIQELIKAQETLLKD 223
>gi|306829036|ref|ZP_07462227.1| polyribonucleotide nucleotidyltransferase [Streptococcus mitis ATCC
6249]
gi|304428841|gb|EFM31930.1| polyribonucleotide nucleotidyltransferase [Streptococcus mitis ATCC
6249]
Length = 737
Score = 141 bits (354), Expect = 1e-31, Method: Composition-based stats.
Identities = 42/244 (17%), Positives = 80/244 (32%), Gaps = 18/244 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56
+R GR+ +++R + GS L G T L+ T E ++ +
Sbjct: 317 VRPDGRKVDEIRPLDAVVDFLPRVHGSGLFTRGQTQALSVLTLAPMGETQIIDGLDPEYK 376
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y S G + A R+ G RAL V+ I +
Sbjct: 377 KRFMHHYNFPQYSVGETGRYGAPGRREIGHGALG----ERALAQVLPSLEEFPYAIRLVA 432
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V++++G + A+I +AL ++ + + + D
Sbjct: 433 EVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISD---------GNNYTVLTD 483
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T G I +Q + + + L AK +++ + +
Sbjct: 484 IQGLEDHFGDMDFKVAGTRDG-ITALQMDIKIQGITAEILTEALAQAKKARFEILDVIEA 542
Query: 237 VISN 240
I
Sbjct: 543 TIPE 546
Score = 112 bits (280), Expect = 4e-23, Method: Composition-based stats.
Identities = 42/232 (18%), Positives = 85/232 (36%), Gaps = 26/232 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKV---PMWIRNTKHGWITAEYGMLP 67
RE+ + V+K A GS +V++G++ +LT A + +K+ + + G P
Sbjct: 13 RELVVETGKVAKQANGSVVVRYGESTVLTAAVMSKKMATGDFFPLQVNYEEKMYAAGKFP 72
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R GR + R+I R +R + Q+I +
Sbjct: 73 GGFMKR------EGRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDENASAPM 126
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
AA+ G+ +A G +A + G + G I++ + +
Sbjct: 127 AAMFGSSLA-------------LSISDIPFDGPIAGVQVGYVDGQIIINPSQEQAERSLL 173
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
+ T I V+ A+ S++ L + + +LI Q+++++
Sbjct: 174 ELTVAGTKH-AINMVESGAKE--LSEEIMLEALLKGHEAVKELIAFQEEIVA 222
>gi|149021550|ref|ZP_01835605.1| polyribonucleotide nucleotidyltransferase [Streptococcus pneumoniae
SP23-BS72]
gi|147930246|gb|EDK81231.1| polyribonucleotide nucleotidyltransferase [Streptococcus pneumoniae
SP23-BS72]
Length = 737
Score = 141 bits (354), Expect = 1e-31, Method: Composition-based stats.
Identities = 42/244 (17%), Positives = 81/244 (33%), Gaps = 18/244 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56
+R GR+ +++R + GS L G T L+ T E ++ +
Sbjct: 317 VRPDGRKVDEIRPLDAVVDFLPRVHGSGLFTRGQTQALSVLTLAPMGETQIIDGLDPEYK 376
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y S G + A R+ G RAL V+ I +
Sbjct: 377 KRFMHHYNFPQYSVGETGRYGAPGRREIGHGALG----ERALAQVLPSLEEFPYAIRLVA 432
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V++++G + A+I +AL +++ + + + D
Sbjct: 433 EVLESNGSSSQASICAGTLALMAGGVPIKEPVAGIAMGLISD---------GNNYTVLTD 483
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T G I +Q + + + L AK +++ + +
Sbjct: 484 IQGLEDHFGDMDFKVAGTRDG-ITALQMDIKIQGITAEILTEALAQAKKARFEILDVIEA 542
Query: 237 VISN 240
I
Sbjct: 543 TIPE 546
Score = 112 bits (280), Expect = 4e-23, Method: Composition-based stats.
Identities = 42/232 (18%), Positives = 85/232 (36%), Gaps = 26/232 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKV---PMWIRNTKHGWITAEYGMLP 67
RE+ + V+K A GS +V++G++ +LT A + +K+ + + G P
Sbjct: 13 RELIVETGQVAKQANGSVVVRYGESTVLTAAVMSKKMATGDFFPLQVNYEEKMYAAGKFP 72
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R GR + R+I R +R + Q+I +
Sbjct: 73 GGFMKR------EGRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDENASAPM 126
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
AA+ G+ +A G +A + G + G I++ + +
Sbjct: 127 AAMFGSSLA-------------LSISDIPFDGPIAGVQVGYVDGQIIINPSQEQAEQSLL 173
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
+ T I V+ A+ S++ L + + +LI Q+++++
Sbjct: 174 ELTVAGTKH-AINMVESGAKE--LSEEIMLEALLKGHEAVKELIAFQEEIVA 222
>gi|212716682|ref|ZP_03324810.1| hypothetical protein BIFCAT_01615 [Bifidobacterium catenulatum DSM
16992]
gi|212660386|gb|EEB20961.1| hypothetical protein BIFCAT_01615 [Bifidobacterium catenulatum DSM
16992]
Length = 893
Score = 141 bits (354), Expect = 1e-31, Method: Composition-based stats.
Identities = 45/241 (18%), Positives = 85/241 (35%), Gaps = 14/241 (5%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +R +S + GS L + G+T +L TL E+ + +
Sbjct: 346 RIDGRGLRDIRTLSAEVDIVPRVHGSALFQRGETQILGVTTLNMLKMEQQIDALSGPQSK 405
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y M P STG + + R+ G +AL V+ I +
Sbjct: 406 RYMHNYEMPPYSTGETGRVGSPKRREIGHGAL----AEKALVPVLPNREEFPYAIRQVSE 461
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
I ++G T ++ + ++L ++ + V + G + D+
Sbjct: 462 AIGSNGSTSMGSVCASTLSLLAAGVPLKAPVAGIAMGLV-----SGDVDGQHIFKTLTDI 516
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED+ D+D T I +Q + D + L AK+ ++++ +
Sbjct: 517 LGAEDAFGDMDFKVAGTSEF-ITALQLDTKLDGIPADILASALQQAKEARTTILEVINEC 575
Query: 238 I 238
I
Sbjct: 576 I 576
>gi|322377809|ref|ZP_08052298.1| polyribonucleotide nucleotidyltransferase [Streptococcus sp. M334]
gi|321281232|gb|EFX58243.1| polyribonucleotide nucleotidyltransferase [Streptococcus sp. M334]
Length = 737
Score = 141 bits (354), Expect = 1e-31, Method: Composition-based stats.
Identities = 42/244 (17%), Positives = 80/244 (32%), Gaps = 18/244 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56
+R GR+ +++R + GS L G T L+ T E ++ +
Sbjct: 317 VRPDGRKVDEIRPLDAVVDFLPRVHGSGLFTRGQTQALSVLTLAPMGETQIIDGLDPEYK 376
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y S G + A R+ G RAL V+ I +
Sbjct: 377 KRFMHHYNFPQYSVGETGRYGAPGRREIGHGALG----ERALAQVLPSLEEFPYAIRLVA 432
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V++++G + A+I +AL ++ + + + D
Sbjct: 433 EVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISD---------GNNYTVLTD 483
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T G I +Q + + + L AK +++ + +
Sbjct: 484 IQGLEDHFGDMDFKVAGTRDG-ITALQMDIKIQGITAEILTEALAQAKKARFEILDVIEA 542
Query: 237 VISN 240
I
Sbjct: 543 TIPE 546
Score = 112 bits (280), Expect = 4e-23, Method: Composition-based stats.
Identities = 42/232 (18%), Positives = 85/232 (36%), Gaps = 26/232 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKV---PMWIRNTKHGWITAEYGMLP 67
RE+ + V+K A GS +V++G++ +LT A + +K+ + + G P
Sbjct: 13 RELIVETGQVAKQANGSVVVRYGESTVLTAAVMSKKMATGDFFPLQVNYEEKMYAAGKFP 72
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R GR + R+I R +R + Q+I +
Sbjct: 73 GGFMKR------EGRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDENASAPM 126
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
AA+ G+ +A G +A + G + G I++ + +
Sbjct: 127 AAMFGSSLA-------------LSISDIPFDGPIAGVQVGYVDGQIIINPSQEQAEQSLL 173
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
+ T I V+ A+ S++ L + + +LI Q+++++
Sbjct: 174 ELTVAGTKH-AINMVESGAKE--LSEEIMLEALLKGHEAVKELIAFQEEIVA 222
>gi|187611307|sp|Q8DQT0|PNP_STRR6 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|187611312|sp|Q04LT4|PNP_STRP2 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
Length = 737
Score = 141 bits (354), Expect = 1e-31, Method: Composition-based stats.
Identities = 42/244 (17%), Positives = 80/244 (32%), Gaps = 18/244 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56
+R GR+ +++R + GS L G T L+ T E ++ +
Sbjct: 317 VRPDGRKVDEIRPLDAVVDFLPRVHGSGLFTRGQTQALSVLTLAPMGETQIIDGLDPEYK 376
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y S G + A R+ G RAL V+ I +
Sbjct: 377 KRFMHHYNFPQYSVGETGRYGAPGRREIGHGALG----ERALAQVLPSLEEFPYAIRLVA 432
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V++++G + A+I +AL ++ + + + D
Sbjct: 433 EVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISD---------GNNYTVLTD 483
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T G I +Q + + + L AK +++ + +
Sbjct: 484 IQGLEDHFGDMDFKVAGTRDG-ITALQMDIKIQGITAEILTEALAQAKKARFEILDVIEA 542
Query: 237 VISN 240
I
Sbjct: 543 TIPE 546
Score = 112 bits (280), Expect = 4e-23, Method: Composition-based stats.
Identities = 42/232 (18%), Positives = 85/232 (36%), Gaps = 26/232 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKV---PMWIRNTKHGWITAEYGMLP 67
RE+ + V+K A GS +V++G++ +LT A + +K+ + + G P
Sbjct: 13 RELIVETGQVAKQANGSVVVRYGESTVLTAAVMSKKMATGDFFPLQVNYEEKMYAAGKFP 72
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R GR + R+I R +R + Q+I +
Sbjct: 73 GGFMKR------EGRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDENASAPM 126
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
AA+ G+ +A G +A + G + G I++ + +
Sbjct: 127 AAMFGSSLA-------------LSISDIPFDGPIAGVQVGYVDGQIIINPSQEQAEQSLL 173
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
+ T I V+ A+ S++ L + + +LI Q+++++
Sbjct: 174 ELTVAGTKH-AINMVESGAKE--LSEEIMLEALLKGHEAVKELIAFQEEIVA 222
>gi|318042724|ref|ZP_07974680.1| ribonuclease PH [Synechococcus sp. CB0101]
Length = 244
Score = 141 bits (354), Expect = 1e-31, Method: Composition-based stats.
Identities = 94/239 (39%), Positives = 134/239 (56%), Gaps = 4/239 (1%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R GR + +R +A S V G T ++ + LEE VP W + + GW++A
Sbjct: 7 RSDGRSPSDLRPTRFDWDPMGFALSSVTVHTGRTAVICSVCLEEDVPKWRQGSGKGWLSA 66
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
+Y +LP ST +R R + GR+QEIQR+I R+LR+ +DL ALG R + IDCDV+QA
Sbjct: 67 DYRLLPASTPSRQPR--ELMKLSGRTQEIQRLIARSLRACLDLEALGERSLHIDCDVLQA 124
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
D GTR+A+ITGAW AL L + + VAA+S G++ ++DLDY E
Sbjct: 125 DAGTRSASITGAWAAL--ALGLRRLEARGVLNGTPMLEQVAAVSVGLVGSQALLDLDYSE 182
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
DS +VD N VM G ++EVQG+AE A FS+ +L+LA + + L Q +
Sbjct: 183 DSRAEVDLNVVMNSQGQLLEVQGTAEGAPFSRQQLNQLLDLADEGLQLLRHSQLQALEQ 241
>gi|311064966|ref|YP_003971692.1| polyribonucleotide nucleotidyltransferase [Bifidobacterium bifidum
PRL2010]
gi|310867286|gb|ADP36655.1| Pnp Polyribonucleotide nucleotidyltransferase [Bifidobacterium
bifidum PRL2010]
Length = 887
Score = 141 bits (354), Expect = 1e-31, Method: Composition-based stats.
Identities = 44/241 (18%), Positives = 82/241 (34%), Gaps = 14/241 (5%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +R +S + GS L + G+T +L TL E+ + +
Sbjct: 346 RIDGRGLRDIRTLSAEVDIVPRVHGSALFQRGETQILGVTTLNMLKMEQQIDALSGPQSK 405
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y M P STG + + R+ G +A+ V+ I +
Sbjct: 406 RYMHNYEMPPYSTGETGRVGSPKRREIGHGAL----AEKAIVPVLPSREEFPYAIRQVSE 461
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
I ++G T ++ + ++L ++ + V + G + D+
Sbjct: 462 AIGSNGSTSMGSVCASTLSLLAAGVPLKAPVAGIAMGLV-----SGDVDGQHVFKTLTDI 516
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED+ D+D T I +Q + D L A + ++ L +
Sbjct: 517 LGAEDAFGDMDFKVAGTSEF-ITALQLDTKLDGIPADILAGALQQAHEARTTILDLINEC 575
Query: 238 I 238
I
Sbjct: 576 I 576
Score = 71.0 bits (172), Expect = 1e-10, Method: Composition-based stats.
Identities = 36/247 (14%), Positives = 72/247 (29%), Gaps = 33/247 (13%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGD-THLLTTATLE----EKVPMWIRNTKHGWITAEYGM 65
R + +++ A+G+ D + +L+T T E + G
Sbjct: 21 RTLRFETGRLAQQADGAVAAYLDDDSMILSTTTAGSSPKENYDFFPLTVDVEEKMYAAGK 80
Query: 66 LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125
+P S R GR + R+I R LR + + Q++ I D
Sbjct: 81 IPGSFFRR------EGRPSSEAILACRIIDRPLRPLFPHTLRNEVQVVETVLSIDPDDAY 134
Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185
A+ A + E + +L+ + VA + G
Sbjct: 135 DVIALNAASASTMISGLPFEGPVSGVRLALIDGQWVAFPRWSERERAVFEIVVAGR---- 190
Query: 186 DVDANFVMTDSGHIVEVQGSAERATFS-----------QDHFFAMLNLAKDRIADLIKLQ 234
+ I ++ A + + ++ L AK I + + Q
Sbjct: 191 -----VIENGDVAIAMIEAGAGKNAWHLIYDEGQIKPDEEVVAQGLEAAKPFIKVICEAQ 245
Query: 235 KDVISNE 241
+ + +
Sbjct: 246 NE-LKEK 251
>gi|307708303|ref|ZP_07644770.1| polyribonucleotide nucleotidyltransferase [Streptococcus mitis NCTC
12261]
gi|307615749|gb|EFN94955.1| polyribonucleotide nucleotidyltransferase [Streptococcus mitis NCTC
12261]
Length = 737
Score = 141 bits (354), Expect = 1e-31, Method: Composition-based stats.
Identities = 42/244 (17%), Positives = 80/244 (32%), Gaps = 18/244 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56
+R GR+ +++R + GS L G T L+ T E ++ +
Sbjct: 317 VRPDGRKVDEIRPLDAVVDFLPRVHGSGLFTRGQTQALSVLTLAPMGETQIIDGLDPEYK 376
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y S G + A R+ G RAL V+ I +
Sbjct: 377 KRFMHHYNFPQYSVGETGRYGAPGRREIGHGALG----ERALAQVLPSLEEFPYAIRLVA 432
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V++++G + A+I +AL ++ + + + D
Sbjct: 433 EVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISD---------GNNYTVLTD 483
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T G I +Q + + + L AK +++ + +
Sbjct: 484 IQGLEDHFGDMDFKVAGTRDG-ITALQMDIKIQGITAEILTEALAQAKKARFEILDVIEA 542
Query: 237 VISN 240
I
Sbjct: 543 TIPE 546
Score = 112 bits (280), Expect = 4e-23, Method: Composition-based stats.
Identities = 42/232 (18%), Positives = 85/232 (36%), Gaps = 26/232 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKV---PMWIRNTKHGWITAEYGMLP 67
RE+ + V+K A GS +V++G++ +LT A + +K+ + + G P
Sbjct: 13 RELIVETGQVAKQANGSVVVRYGESTVLTAAVMSKKMATGDFFPLQVNYEEKMYAAGKFP 72
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R GR + R+I R +R + Q+I +
Sbjct: 73 GGFMKR------EGRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDENASAPM 126
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
AA+ G+ +A G +A + G + G I++ + +
Sbjct: 127 AAMFGSSLA-------------LSISDIPFDGPIAGVQVGYVDGQIIINPTQEQAEQSLL 173
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
+ T I V+ A+ S++ L + + +LI Q+++++
Sbjct: 174 ELTVAGTKH-AINMVESGAKE--LSEEIMLEALLKGHEAVKELIAFQEEIVA 222
>gi|298502383|ref|YP_003724323.1| polynucleotide phosphorylase/polyadenylase [Streptococcus
pneumoniae TCH8431/19A]
gi|298237978|gb|ADI69109.1| polynucleotide phosphorylase/polyadenylase [Streptococcus
pneumoniae TCH8431/19A]
Length = 754
Score = 141 bits (354), Expect = 1e-31, Method: Composition-based stats.
Identities = 42/244 (17%), Positives = 80/244 (32%), Gaps = 18/244 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56
+R GR+ +++R + GS L G T L+ T E ++ +
Sbjct: 334 VRPDGRKVDEIRPLDAVVDFLPRVHGSGLFTRGQTQALSVLTLAPMGETQIIDGLDPEYK 393
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y S G + A R+ G RAL V+ I +
Sbjct: 394 KRFMHHYNFPQYSVGETGRYGAPGRREIGHGALG----ERALAQVLPSLEEFPYAIRLVA 449
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V++++G + A+I +AL ++ + + + D
Sbjct: 450 EVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISD---------GNNYTVLTD 500
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T G I +Q + + + L AK +++ + +
Sbjct: 501 IQGLEDHFGDMDFKVAGTRDG-ITALQMDIKIQGITAEILTEALAQAKKARFEILDVIEA 559
Query: 237 VISN 240
I
Sbjct: 560 TIPE 563
Score = 112 bits (280), Expect = 4e-23, Method: Composition-based stats.
Identities = 42/232 (18%), Positives = 85/232 (36%), Gaps = 26/232 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKV---PMWIRNTKHGWITAEYGMLP 67
RE+ + V+K A GS +V++G++ +LT A + +K+ + + G P
Sbjct: 30 RELIVETGQVAKQANGSVVVRYGESTVLTAAVMSKKMATGDFFPLQVNYEEKMYAAGKFP 89
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R GR + R+I R +R + Q+I +
Sbjct: 90 GGFMKR------EGRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDENASAPM 143
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
AA+ G+ +A G +A + G + G I++ + +
Sbjct: 144 AAMFGSSLA-------------LSISDIPFDGPIAGVQVGYVDGQIIINPSQEQAEQSLL 190
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
+ T I V+ A+ S++ L + + +LI Q+++++
Sbjct: 191 ELTVAGTKH-AINMVESGAKE--LSEEIMLEALLKGHEAVKELIAFQEEIVA 239
>gi|118466887|ref|YP_882853.1| polynucleotide phosphorylase/polyadenylase [Mycobacterium avium
104]
gi|187610285|sp|A0QIW5|PNP_MYCA1 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|118168174|gb|ABK69071.1| guanosine pentaphosphate synthetase I/polyribonucleotide
nucleotidyltransferase [Mycobacterium avium 104]
Length = 748
Score = 141 bits (354), Expect = 1e-31, Method: Composition-based stats.
Identities = 45/248 (18%), Positives = 83/248 (33%), Gaps = 13/248 (5%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKH 56
R+ GR +R +S V A GS L + G+T +L TL+ + +
Sbjct: 337 FRIDGRGITDIRALSAEVAVVPRAHGSALFQRGETQILGVTTLDMVKMAQQIDSLGPETT 396
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P STG + + R+ G RAL V+ I
Sbjct: 397 KRYMHHYNFPPFSTGETGRVGSPKRREIGHGAL----AERALVPVLPSLEDFPYAIRQVS 452
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCG----MLCGY 172
+ + ++G T ++ + +AL + ++ + V G
Sbjct: 453 EALGSNGSTSMGSVCASTLALLNAGVPLKAPVAGIAMGLVSDDIEVEAGDGTKSLERRFV 512
Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
+ D+ ED+ D+D T + +Q + L+ AKD +++
Sbjct: 513 TLTDILGAEDAFGDMDFKVAGTKDF-VTALQLDTKLDGIPSQVLAGALSQAKDARLTILE 571
Query: 233 LQKDVISN 240
+ + I
Sbjct: 572 VMAEAIDE 579
>gi|41408989|ref|NP_961825.1| polynucleotide phosphorylase/polyadenylase [Mycobacterium avium
subsp. paratuberculosis K-10]
gi|81413535|sp|Q73VX0|PNP_MYCPA RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|41397348|gb|AAS05208.1| GpsI [Mycobacterium avium subsp. paratuberculosis K-10]
Length = 757
Score = 141 bits (354), Expect = 1e-31, Method: Composition-based stats.
Identities = 45/248 (18%), Positives = 83/248 (33%), Gaps = 13/248 (5%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKH 56
R+ GR +R +S V A GS L + G+T +L TL+ + +
Sbjct: 346 FRIDGRGITDIRALSAEVAVVPRAHGSALFQRGETQILGVTTLDMVKMAQQIDSLGPETT 405
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P STG + + R+ G RAL V+ I
Sbjct: 406 KRYMHHYNFPPFSTGETGRVGSPKRREIGHGAL----AERALVPVLPSLEDFPYAIRQVS 461
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCG----MLCGY 172
+ + ++G T ++ + +AL + ++ + V G
Sbjct: 462 EALGSNGSTSMGSVCASTLALLNAGVPLKAPVAGIAMGLVSDDIEVEAGDGTKSLERRFV 521
Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
+ D+ ED+ D+D T + +Q + L+ AKD +++
Sbjct: 522 TLTDILGAEDAFGDMDFKVAGTKDF-VTALQLDTKLDGIPSQVLAGALSQAKDARLTILE 580
Query: 233 LQKDVISN 240
+ + I
Sbjct: 581 VMAEAIDE 588
>gi|307706124|ref|ZP_07642943.1| polyribonucleotide nucleotidyltransferase [Streptococcus mitis
SK321]
gi|307618524|gb|EFN97672.1| polyribonucleotide nucleotidyltransferase [Streptococcus mitis
SK321]
Length = 737
Score = 141 bits (354), Expect = 1e-31, Method: Composition-based stats.
Identities = 42/244 (17%), Positives = 80/244 (32%), Gaps = 18/244 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56
+R GR+ +++R + GS L G T L+ T E ++ +
Sbjct: 317 VRPDGRKVDEIRPLDAVVDFLPRVHGSGLFTRGQTQALSVLTLAPMGETQIIDGLDPEYK 376
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y S G + A R+ G RAL V+ I +
Sbjct: 377 KRFMHHYNFPQYSVGETGRYGAPGRREIGHGALG----ERALAQVLPSLEEFPYAIRLVA 432
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V++++G + A+I +AL ++ + + + D
Sbjct: 433 EVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISD---------GNNYTVLTD 483
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T G I +Q + + + L AK +++ + +
Sbjct: 484 IQGLEDHFGDMDFKVAGTRDG-ITALQMDIKIQGITAEILTEALAQAKKARFEILDVIEA 542
Query: 237 VISN 240
I
Sbjct: 543 TIPE 546
Score = 112 bits (280), Expect = 4e-23, Method: Composition-based stats.
Identities = 42/232 (18%), Positives = 85/232 (36%), Gaps = 26/232 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKV---PMWIRNTKHGWITAEYGMLP 67
RE+ + V+K A GS +V++G++ +LT A + +K+ + + G P
Sbjct: 13 RELIVETGQVAKQANGSVVVRYGESTVLTAAVMSKKMATGDFFPLQVNYEEKMYAAGKFP 72
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R GR + R+I R +R + Q+I +
Sbjct: 73 GGFMKR------EGRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDENASAPM 126
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
AA+ G+ +A G +A + G + G I++ + +
Sbjct: 127 AAMFGSSLA-------------LSISDIPFDGPIAGVQVGYVDGQIIINPTQEQAEQSLL 173
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
+ T I V+ A+ S++ L + + +LI Q+++++
Sbjct: 174 ELTVAGTKH-AINMVESGAKE--LSEEIMLEALLKGHEAVKELIAFQEEIVA 222
>gi|124024144|ref|YP_001018451.1| ribonuclease PH [Prochlorococcus marinus str. MIT 9303]
gi|123964430|gb|ABM79186.1| ribonuclease PH [Prochlorococcus marinus str. MIT 9303]
Length = 244
Score = 141 bits (354), Expect = 1e-31, Method: Composition-based stats.
Identities = 102/240 (42%), Positives = 147/240 (61%), Gaps = 4/240 (1%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R GR + MR + +T +A S +++ G T +L + +EE VP W + GW++A
Sbjct: 8 RADGRLADVMRPLQVTWDPMGFALSSLIIRTGRTAVLCSVCVEEGVPRWRQGQGKGWLSA 67
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
EY +LP ST R + + GR+QEIQR+IGR+LR+V+D++AL + IDCDVIQA
Sbjct: 68 EYRLLPGSTPQR--QNRELLKLSGRTQEIQRLIGRSLRAVIDMAALRETTLRIDCDVIQA 125
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
D GTRTAAITGAW+AL + + Q + VAA+S G++ YP++DLDY E
Sbjct: 126 DAGTRTAAITGAWIALKRGCDRLLEQ--GLLTHQPVIDQVAAVSVGLVDSYPLLDLDYSE 183
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
DS DVD N VM +GH++E+QG+AE A FS++ +LNLA+ + L Q+ + E
Sbjct: 184 DSRADVDLNVVMGSNGHLLELQGTAEGAPFSRNQLNDLLNLAEPGLQHLQTFQRSALMQE 243
>gi|307704339|ref|ZP_07641256.1| polyribonucleotide nucleotidyltransferase [Streptococcus mitis
SK597]
gi|307622099|gb|EFO01119.1| polyribonucleotide nucleotidyltransferase [Streptococcus mitis
SK597]
Length = 737
Score = 141 bits (354), Expect = 1e-31, Method: Composition-based stats.
Identities = 42/244 (17%), Positives = 80/244 (32%), Gaps = 18/244 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56
+R GR+ +++R + GS L G T L+ T E ++ +
Sbjct: 317 VRPDGRKVDEIRPLDAVVDFLPRVHGSGLFTRGQTQALSVLTLAPMGETQIIDGLDPEYK 376
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y S G + A R+ G RAL V+ I +
Sbjct: 377 KRFMHHYNFPQYSVGETGRYGAPGRREIGHGALG----ERALAQVLPSLEEFPYAIRLVA 432
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V++++G + A+I +AL ++ + + + D
Sbjct: 433 EVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISD---------GNNYTVLTD 483
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T G I +Q + + + L AK +++ + +
Sbjct: 484 IQGLEDHFGDMDFKVAGTRDG-ITALQMDIKIQGITAEILTEALAQAKKARFEILDVIEA 542
Query: 237 VISN 240
I
Sbjct: 543 TIPE 546
Score = 112 bits (280), Expect = 4e-23, Method: Composition-based stats.
Identities = 42/232 (18%), Positives = 85/232 (36%), Gaps = 26/232 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKV---PMWIRNTKHGWITAEYGMLP 67
RE+ + V+K A GS +V++G++ +LT A + +K+ + + G P
Sbjct: 13 RELIVETGQVAKQANGSVVVRYGESTVLTAAVMSKKMATGDFFPLQVNYEEKMYAAGKFP 72
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R GR + R+I R +R + Q+I +
Sbjct: 73 GGFMKR------EGRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDENASAPM 126
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
AA+ G+ +A G +A + G + G I++ + +
Sbjct: 127 AAMFGSSLA-------------LSISDIPFDGPIAGVQVGYVDGQIIINPTQEQAEQSLL 173
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
+ T I V+ A+ S++ L + + +LI Q+++++
Sbjct: 174 ELTVAGTKH-AINMVESGAKE--LSEEIMLEALLKGHEAVKELIAFQEEIVA 222
>gi|289168431|ref|YP_003446700.1| polyribonucleotide nucleotidyltransferase [Streptococcus mitis B6]
gi|288907998|emb|CBJ22838.1| polyribonucleotide nucleotidyltransferase [Streptococcus mitis B6]
Length = 737
Score = 141 bits (354), Expect = 1e-31, Method: Composition-based stats.
Identities = 42/244 (17%), Positives = 80/244 (32%), Gaps = 18/244 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56
+R GR+ +++R + GS L G T L+ T E ++ +
Sbjct: 317 VRPDGRKVDEIRPLDAVVDFLPRVHGSGLFTRGQTQALSVLTLAPMGETQIIDGLDPEYK 376
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y S G + A R+ G RAL V+ I +
Sbjct: 377 KRFMHHYNFPQYSVGETGRYGAPGRREIGHGALG----ERALAQVLPSLEEFPYAIRLVA 432
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V++++G + A+I +AL ++ + + + D
Sbjct: 433 EVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISD---------GNNYTVLTD 483
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T G I +Q + + + L AK +++ + +
Sbjct: 484 IQGLEDHFGDMDFKVAGTRDG-ITALQMDIKIQGITAEILTEALAQAKKARFEILDVIEA 542
Query: 237 VISN 240
I
Sbjct: 543 TIPE 546
Score = 112 bits (280), Expect = 4e-23, Method: Composition-based stats.
Identities = 42/232 (18%), Positives = 85/232 (36%), Gaps = 26/232 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKV---PMWIRNTKHGWITAEYGMLP 67
RE+ + V+K A GS +V++G++ +LT A + +K+ + + G P
Sbjct: 13 RELIVETGQVAKQANGSVVVRYGESTVLTAAVMSKKMATGDFFPLQVNYEEKMYAAGKFP 72
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R GR + R+I R +R + Q+I +
Sbjct: 73 GGFMKR------EGRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDENASAPM 126
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
AA+ G+ +A G +A + G + G I++ + +
Sbjct: 127 AAMFGSSLA-------------LSISDIPFDGPIAGVQVGYVDGQIIINPTQEQAEQSLL 173
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
+ T I V+ A+ S++ L + + +LI Q+++++
Sbjct: 174 ELTVAGTKH-AINMVESGAKE--LSEEIMLEALLKGHEAVKELIAFQEEIVA 222
>gi|183603103|ref|ZP_02712475.2| polyribonucleotide nucleotidyltransferase
(Polynucleotidephosphorylase) (PNPase) (Vegetative
protein 15) (VEG15) [Streptococcus pneumoniae SP195]
gi|183603451|ref|ZP_02716891.2| polyribonucleotide nucleotidyltransferase
(Polynucleotidephosphorylase) (PNPase) (Vegetative
protein 15) (VEG15) [Streptococcus pneumoniae
CDC3059-06]
gi|221231415|ref|YP_002510567.1| polyribonucleotide nucleotidyltransferase [Streptococcus pneumoniae
ATCC 700669]
gi|254782738|sp|B8ZMC0|PNP_STRPJ RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|183572923|gb|EDT93451.1| polyribonucleotide nucleotidyltransferase
(Polynucleotidephosphorylase) (PNPase) (Vegetative
protein 15) (VEG15) [Streptococcus pneumoniae SP195]
gi|183577007|gb|EDT97535.1| polyribonucleotide nucleotidyltransferase
(Polynucleotidephosphorylase) (PNPase) (Vegetative
protein 15) (VEG15) [Streptococcus pneumoniae
CDC3059-06]
gi|220673875|emb|CAR68380.1| polyribonucleotide nucleotidyltransferase [Streptococcus pneumoniae
ATCC 700669]
gi|332074399|gb|EGI84875.1| polyribonucleotide nucleotidyltransferase [Streptococcus pneumoniae
GA17570]
Length = 737
Score = 141 bits (354), Expect = 1e-31, Method: Composition-based stats.
Identities = 42/244 (17%), Positives = 80/244 (32%), Gaps = 18/244 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56
+R GR+ +++R + GS L G T L+ T E ++ +
Sbjct: 317 VRPDGRKVDEIRPLDAVVDFLPRVHGSGLFTRGQTQALSVLTLAPMGETQIIDGLDPEYK 376
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y S G + A R+ G RAL V+ I +
Sbjct: 377 KRFMHHYNFPQYSVGETGRYGAPGRREIGHGALG----ERALAQVLPSLEEFPYAIRLVA 432
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V++++G + A+I +AL ++ + + + D
Sbjct: 433 EVLESNGSSSQASICAGTLALMTGGVPIKAPVAGIAMGLISD---------GNNYTVLTD 483
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T G I +Q + + + L AK +++ + +
Sbjct: 484 IQGLEDHFGDMDFKVAGTRDG-ITALQMDIKIQGITAEILTEALAQAKKARFEILDVIEA 542
Query: 237 VISN 240
I
Sbjct: 543 TIPE 546
Score = 112 bits (280), Expect = 4e-23, Method: Composition-based stats.
Identities = 42/232 (18%), Positives = 85/232 (36%), Gaps = 26/232 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKV---PMWIRNTKHGWITAEYGMLP 67
RE+ + V+K A GS +V++G++ +LT A + +K+ + + G P
Sbjct: 13 RELIVETGQVAKQANGSVVVRYGESTVLTAAVMSKKMATGDFFPLQVNYEEKMYAAGKFP 72
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R GR + R+I R +R + Q+I +
Sbjct: 73 GGFMKR------EGRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDENASAPM 126
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
AA+ G+ +A G +A + G + G I++ + +
Sbjct: 127 AAMFGSSLA-------------LSISDIPFDGPIAGVQVGYVDGQIIINPSQEQAEQSLL 173
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
+ T I V+ A+ S++ L + + +LI Q+++++
Sbjct: 174 ELTVAGTKH-AINMVESGAKE--LSEEIMLEALLKGHEAVKELIAFQEEIVA 222
>gi|169833588|ref|YP_001694072.1| polynucleotide phosphorylase/polyadenylase [Streptococcus
pneumoniae Hungary19A-6]
gi|226703873|sp|B1IAA9|PNP_STRPI RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|168996090|gb|ACA36702.1| polyribonucleotide nucleotidyltransferase [Streptococcus pneumoniae
Hungary19A-6]
Length = 737
Score = 141 bits (354), Expect = 1e-31, Method: Composition-based stats.
Identities = 42/244 (17%), Positives = 80/244 (32%), Gaps = 18/244 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56
+R GR+ +++R + GS L G T L+ T E ++ +
Sbjct: 317 VRPDGRKVDEIRPLDAVVDFLPRVHGSGLFTRGQTQALSVLTLAPMGETQIIDGLDPEYK 376
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y S G + A R+ G RAL V+ I +
Sbjct: 377 KRFMHHYNFPQYSVGETGRYGAPGRREIGHGALG----ERALAQVLPSLEEFPYAIRLVA 432
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V++++G + A+I +AL ++ + + + D
Sbjct: 433 EVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISD---------GNNYTVLTD 483
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T G I +Q + + + L AK +++ + +
Sbjct: 484 IQGLEDHFGDMDFKVAGTRDG-ITALQMDIKIQGITAEILTEALAQAKKARFEILDVIEA 542
Query: 237 VISN 240
I
Sbjct: 543 TIPE 546
Score = 112 bits (280), Expect = 4e-23, Method: Composition-based stats.
Identities = 42/232 (18%), Positives = 85/232 (36%), Gaps = 26/232 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKV---PMWIRNTKHGWITAEYGMLP 67
RE+ + V+K A GS +V++G++ +LT A + +K+ + + G P
Sbjct: 13 RELIVETGQVAKQANGSVVVRYGESTVLTAAVMSKKMATGDFFPLQVNYEEKMYAAGKFP 72
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R GR + R+I R +R + Q+I +
Sbjct: 73 GGFMKR------EGRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDENASAPM 126
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
AA+ G+ +A G +A + G + G I++ + +
Sbjct: 127 AAMFGSSLA-------------LSISDIPFDGPIAGVQVGYVDGQIIINPSQEQAEQSLL 173
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
+ T I V+ A+ S++ L + + +LI Q+++++
Sbjct: 174 ELTVAGTKH-AINMVESGAKE--LSEEIMLEALLKGHEAVKELIAFQEEIVA 222
>gi|126696730|ref|YP_001091616.1| polynucleotide phosphorylase/polyadenylase [Prochlorococcus marinus
str. MIT 9301]
gi|187610309|sp|A3PE40|PNP_PROM0 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|126543773|gb|ABO18015.1| polyribonucleotide nucleotidyltransferase [Prochlorococcus marinus
str. MIT 9301]
Length = 721
Score = 141 bits (354), Expect = 1e-31, Method: Composition-based stats.
Identities = 43/244 (17%), Positives = 89/244 (36%), Gaps = 19/244 (7%)
Query: 2 RLSGRQENQMREISLTRRVSK-YAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
R+ GR +++R+IS + + GS L + G T +L+T TL + + + +
Sbjct: 323 RVDGRDLDEVRKISASAGILPKRVHGSALFQRGLTQVLSTTTLGTPSDAQEMDDLNPSTE 382
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P S G R+ G RA+ V+ + +
Sbjct: 383 KTYLHHYNFPPYSVGETRPMRTPGRREIGHGAL----AERAIIPVLPGKETFPYVLRVVS 438
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V+ ++G T ++ G+ ++L D ++ + + + +G + D
Sbjct: 439 EVLSSNGSTSMGSVCGSTLSLLDAGVPLKAPVSGTAMGLIKEGKEV---------RILTD 489
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D TD G I +Q + + A+ +++ ++
Sbjct: 490 IQGIEDFLGDMDFKVAGTDKG-ITALQMDMKITGLPVSIISDAIKKARPARLHILEKMQE 548
Query: 237 VISN 240
I
Sbjct: 549 AIEK 552
Score = 103 bits (256), Expect = 2e-20, Method: Composition-based stats.
Identities = 55/235 (23%), Positives = 91/235 (38%), Gaps = 26/235 (11%)
Query: 10 QMREISLTRR-VSKYAEGSCLVKFGDTHLLTTATLE---EKVPMWIRNTKHGWITAEYGM 65
REI LT + A GS +++ GDT LL TAT E + G
Sbjct: 11 DGREIRLTTGLYAPQANGSVMIECGDTSLLVTATKTTKKEVSDFLPLICDYEEKLYAAGR 70
Query: 66 LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125
+P R GR R+ I R+I R +R + QI+ C +
Sbjct: 71 IPGGFMRR------EGRPPERATLISRLIDRPMRPLFPSWMRDEIQIVASCLSLDERVPA 124
Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185
A+TGA +A G +AA+ G++ I++ Y E
Sbjct: 125 DILAVTGASIAT-------------LLGEIPFYGPMAAVRVGLIGDDFILNPSYREIEKG 171
Query: 186 DVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
D+D + G IV ++ A + S+ ++ + +++LIK Q+D++ +
Sbjct: 172 DLDIVVAGSKEG-IVMIEAGANQ--LSEQDTIEAIDFGYEAVSELIKSQEDLLKD 223
>gi|111023614|ref|YP_706586.1| polynucleotide phosphorylase/polyadenylase [Rhodococcus jostii
RHA1]
gi|123339641|sp|Q0S208|PNP_RHOSR RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|110823144|gb|ABG98428.1| polyribonucleotide nucleotidyltransferase [Rhodococcus jostii RHA1]
Length = 757
Score = 141 bits (354), Expect = 1e-31, Method: Composition-based stats.
Identities = 45/242 (18%), Positives = 84/242 (34%), Gaps = 14/242 (5%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKH 56
R+ GR +R +S + A GS L + G+T +L TL+ + +
Sbjct: 356 FRIDGRGITDIRSLSAEVAIVPRAHGSALFERGETQILGVTTLDMVKMAQQVDSLGPETT 415
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P STG + + R+ G RAL V+ I
Sbjct: 416 KRYMHHYNFPPYSTGETGRVGSPKRREIGHGAL----AERALMPVLPSVEEFPYAIRQVS 471
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+ + ++G T ++ + +AL + ++ + V G + D
Sbjct: 472 EALSSNGSTSMGSVCASTLALLNAGVPLKAPVAGIAMGLVSDQ-----VDGETRYVALTD 526
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED+ D+D T + +Q + L+ AKD A ++++ +
Sbjct: 527 ILGAEDAFGDMDFKVAGTKDF-VTALQLDTKLDGIPSKVLAGALSQAKDARATILEVMAE 585
Query: 237 VI 238
I
Sbjct: 586 AI 587
>gi|85860514|ref|YP_462716.1| polynucleotide phosphorylase/polyadenylase [Syntrophus
aciditrophicus SB]
gi|123752513|sp|Q2LWT4|PNP_SYNAS RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|85723605|gb|ABC78548.1| polyribonucleotide nucleotidyltransferase [Syntrophus
aciditrophicus SB]
Length = 705
Score = 141 bits (354), Expect = 1e-31, Method: Composition-based stats.
Identities = 45/243 (18%), Positives = 82/243 (33%), Gaps = 18/243 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTT----ATLEEKVPMWIRNTKHG 57
R+ GR ++R IS + A GS L G+T L + +E+ ++ +
Sbjct: 323 RIDGRSYAEIRAISAEVGILPRAHGSALFNRGETQSLAALALGTSSDEQRLDYVAGEETR 382
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P G + R+ G +AL V+ I I +
Sbjct: 383 SFILHYNFPPYCVGEARPLRSPGRREIGHGNL----ARKALMPVIPSPEEFPYTIRIVSE 438
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
++ ++G + A + G + L D ++ + + +G I +
Sbjct: 439 ILSSNGSSSMATVCGGLLCLMDGGVPVKGVVAGIAMGLLKEGEQVVILSD---------I 489
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T G I +Q + ++D L A++ +I
Sbjct: 490 LGDEDHAGDMDFKVCGTSKG-ITAMQMDIKIDGINEDILRKALAQAREGRLFIIDKILAT 548
Query: 238 ISN 240
IS
Sbjct: 549 ISE 551
Score = 91.1 bits (224), Expect = 1e-16, Method: Composition-based stats.
Identities = 43/240 (17%), Positives = 86/240 (35%), Gaps = 36/240 (15%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTKHGWITAEYGML 66
R IS+ V+ A+G+ +V +GDT ++ TA T E V + +T G +
Sbjct: 12 RNISIKTGYVAGQADGAVMVIYGDTVVMVTAVSLKTAREGVDFLPLTVDYQEMTYAAGKI 71
Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
P R GR R R+I R++R + Q++ + ++ +
Sbjct: 72 PGGFFKR------EGRPNEREILTSRVIDRSIRPLFPKGYCYETQLVATVLSVDSENDSD 125
Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
+ + KG + + G + G I + E D
Sbjct: 126 V-------------AALLAASAALEISDIPFKGPIVGVRVGRVDGQFICNPSKLEQEKGD 172
Query: 187 VDANFVMTD----------SGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
++ V ++V ++G A++ ++H A ++ + + +I+LQ
Sbjct: 173 LNLYLVGRKVVPGTEGRPYDVNLVMLEGEAQQVE--EEHVIAGIDFGLECMRPVIELQDQ 230
>gi|332289494|ref|YP_004420346.1| polynucleotide phosphorylase/polyadenylase [Gallibacterium anatis
UMN179]
gi|330432390|gb|AEC17449.1| polynucleotide phosphorylase/polyadenylase [Gallibacterium anatis
UMN179]
Length = 718
Score = 141 bits (354), Expect = 1e-31, Method: Composition-based stats.
Identities = 39/241 (16%), Positives = 86/241 (35%), Gaps = 18/241 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR + +R + + V GS + G+T L TL + ++ + +
Sbjct: 317 RIDGRTVDTVRALDICTGVLPRTHGSAIFTRGETQSLAVTTLGTERDAQIIDELTGERTD 376
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + R+ G + R + +V+ + + +
Sbjct: 377 HFLFHYNFPPYSVGETGLIGSPKRREIGHGRL----AKRGVAAVMPTLEEFPYVVRVVSE 432
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ GA ++L D ++ + V + + +
Sbjct: 433 ITESNGSSSMASVCGASLSLMDAGVPIKAAVAGIAMGLVKEEDKFVVLSD---------I 483
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T +G + +Q + + + LN AK ++ + +
Sbjct: 484 LGDEDHLGDMDFKVAGTRTG-VTALQMDIKIEGITPEIMQIALNQAKSARMHILNVMEQA 542
Query: 238 I 238
I
Sbjct: 543 I 543
Score = 89.5 bits (220), Expect = 4e-16, Method: Composition-based stats.
Identities = 35/228 (15%), Positives = 72/228 (31%), Gaps = 27/228 (11%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----HGWITAEYGMLPR 68
++L +++ A + + DT + T +++V + + G +P
Sbjct: 15 VTLETGAMARQATAAVMASMDDTCVFVTVVAKKEVKEGQDFFPLTVNYQERSYAAGRIPG 74
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
R GR I R+I R +R + L QII +
Sbjct: 75 GFFKR------EGRPSEGETLIARLIDRPIRPLFPEGFLNEIQIIATVVSVNPQISPDLV 128
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+ GA A G + A G + +++ E +D
Sbjct: 129 AMIGASAA-------------LSLSGVPFNGPIGAARVGFINDQFVLNPTMSEQKQSRLD 175
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
T ++ V+ A+ +++ A + + +I+ K+
Sbjct: 176 LVVAGT-DKAVLMVESEADI--LTEEQMLAAVVFGHQQQQVVIEAIKE 220
>gi|322374185|ref|ZP_08048718.1| polyribonucleotide nucleotidyltransferase [Streptococcus sp. C150]
gi|321276890|gb|EFX53962.1| polyribonucleotide nucleotidyltransferase [Streptococcus sp. C150]
Length = 745
Score = 141 bits (354), Expect = 1e-31, Method: Composition-based stats.
Identities = 42/244 (17%), Positives = 82/244 (33%), Gaps = 18/244 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
+R GR+ +++R + GS L G T L+ TL + ++ +
Sbjct: 317 VRPDGRRVDEIRPLDAEIDFLPKVHGSGLFTRGQTQALSVLTLAPMSDTQLVDGLDPEYK 376
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y S G + A R+ G RAL V+ I +
Sbjct: 377 KRFLHHYNFPQYSVGETGRYGAPGRREIGHGALG----ERALAQVLPSVEEFPYAIRLVA 432
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V++++G + A+I +AL ++ + + + D
Sbjct: 433 EVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISD---------GTNYTVLTD 483
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T G I +Q + + + L AK +++ + +
Sbjct: 484 IQGLEDHFGDMDFKVAGTRQG-ITALQMDIKISGITPAILEEALAQAKVARFEILDVIES 542
Query: 237 VISN 240
I+
Sbjct: 543 TIAE 546
Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats.
Identities = 42/228 (18%), Positives = 77/228 (33%), Gaps = 26/228 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKV---PMWIRNTKHGWITAEYGMLP 67
R + + V+K A G+ +V++GDT +L+TA + +K+ + + G P
Sbjct: 13 RPLVVEVGQVAKQANGAVVVRYGDTTVLSTAVMSKKMATADFFPLQVNYEEKMYAAGKFP 72
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R GR + R+I R +R + Q+I +
Sbjct: 73 GGFNKR------EGRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDENASAPM 126
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
AA+ G+ +A G +A + I++ + +
Sbjct: 127 AAMFGSSLA-------------LSISDIPFNGPIAGVQVAYAAEDFIINPSAADKEVSHL 173
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
D T I V+ A+ S+D L + I +L+ Q
Sbjct: 174 DLTVAGTKE-AINMVESGAQE--LSEDIMLQALLKGHEAIQELVDFQN 218
>gi|310288093|ref|YP_003939352.1| Polyribonucleotide nucleotidyltransferase [Bifidobacterium bifidum
S17]
gi|309252030|gb|ADO53778.1| Polyribonucleotide nucleotidyltransferase [Bifidobacterium bifidum
S17]
Length = 887
Score = 141 bits (354), Expect = 1e-31, Method: Composition-based stats.
Identities = 44/241 (18%), Positives = 82/241 (34%), Gaps = 14/241 (5%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +R +S + GS L + G+T +L TL E+ + +
Sbjct: 346 RIDGRGLRDIRTLSAEVDIVPRVHGSALFQRGETQILGVTTLNMLKMEQQIDALSGPQSK 405
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y M P STG + + R+ G +A+ V+ I +
Sbjct: 406 RYMHNYEMPPYSTGETGRVGSPKRREIGHGAL----AEKAIVPVLPSREEFPYAIRQVSE 461
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
I ++G T ++ + ++L ++ + V + G + D+
Sbjct: 462 AIGSNGSTSMGSVCASTLSLLAAGVPLKAPVAGIAMGLV-----SGDVDGQHVFKTLTDI 516
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED+ D+D T I +Q + D L A + ++ L +
Sbjct: 517 LGAEDAFGDMDFKVAGTSEF-ITALQLDTKLDGIPADILAGALQQAHEARTTILDLINEC 575
Query: 238 I 238
I
Sbjct: 576 I 576
Score = 71.0 bits (172), Expect = 1e-10, Method: Composition-based stats.
Identities = 36/247 (14%), Positives = 72/247 (29%), Gaps = 33/247 (13%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGD-THLLTTATLE----EKVPMWIRNTKHGWITAEYGM 65
R + +++ A+G+ D + +L+T T E + G
Sbjct: 21 RTLRFETGRLAQQADGAVAAYLDDDSMILSTTTAGSSPKENYDFFPLTVDVEEKMYAAGK 80
Query: 66 LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125
+P S R GR + R+I R LR + + Q++ I D
Sbjct: 81 IPGSFFRR------EGRPSSEAILACRIIDRPLRPLFPHTLRNEVQVVETVLSIDPDDAY 134
Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185
A+ A + E + +L+ + VA + G
Sbjct: 135 DVIALNAASASTMISGLPFEGPVSGVRLALIDGQWVAFPRWSERERAVFEIVVAGR---- 190
Query: 186 DVDANFVMTDSGHIVEVQGSAERATFS-----------QDHFFAMLNLAKDRIADLIKLQ 234
+ I ++ A + + ++ L AK I + + Q
Sbjct: 191 -----VIENGDVAIAMIEAGAGKNAWHLIYDEGQIKPDEEVVAQGLEAAKPFIKVICEAQ 245
Query: 235 KDVISNE 241
+ + +
Sbjct: 246 NE-LKEK 251
>gi|225021179|ref|ZP_03710371.1| hypothetical protein CORMATOL_01191 [Corynebacterium matruchotii
ATCC 33806]
gi|224946086|gb|EEG27295.1| hypothetical protein CORMATOL_01191 [Corynebacterium matruchotii
ATCC 33806]
Length = 758
Score = 141 bits (354), Expect = 1e-31, Method: Composition-based stats.
Identities = 44/242 (18%), Positives = 86/242 (35%), Gaps = 14/242 (5%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKH 56
R+ GR +R++ + + A GS L + G+T ++ TL+ E+ + T
Sbjct: 372 FRIDGRGVTDIRDLGVEVDLIPRAHGSSLFERGETQIMGVTTLDMLKMEQQIDSLTPTTT 431
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P STG + + R+ G RAL V+ I
Sbjct: 432 KRYIHHYNFPPYSTGETGRVGSPKRREIGHGAL----AERALVPVIPSREEFPYAIRQVS 487
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+ + ++G T ++ + ++L++ ++ + V + G + D
Sbjct: 488 EALGSNGSTSMGSVCASTLSLYNAGVPLKAPVAGIAMGLVSD-----VVNGKERYVALTD 542
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED+ D+D T I +Q + L A+D ++ +
Sbjct: 543 ILGAEDAFGDMDFKVAGTADF-ITALQLDTKLDGIPSKVLADALAQARDARLTILDTMAE 601
Query: 237 VI 238
VI
Sbjct: 602 VI 603
Score = 75.7 bits (184), Expect = 5e-12, Method: Composition-based stats.
Identities = 39/244 (15%), Positives = 69/244 (28%), Gaps = 26/244 (10%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGD-THLLTTATLEEKV----PMWIRNTKHGWITAEYGM 65
R I +++ A GS + T LL+T T ++ + G
Sbjct: 35 RTIRFETGQLARQAGGSVTTYLDEDTMLLSTVTASKQPREGFDFFPLTVDVEERMYAAGR 94
Query: 66 LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125
+P S R GR + R+I R LR Q+++ I
Sbjct: 95 IPGSFFRR------EGRPSTEAILACRLIDRPLRPTFVKGLRNEVQVVVTVLSIDPKDMY 148
Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQV--LKGHVAAISCGMLCGYPIVDLDYGEDS 183
AI GA A + +++ + K + +
Sbjct: 149 DVVAINGASAATQLSGLPVSGPVGGVRMALIADKKHPKGQWVAFPTHAQHEEAIFELVVA 208
Query: 184 TIDVDANF--VMTDSGHIVEVQGSAERATF----------SQDHFFAMLNLAKDRIADLI 231
V+ + + I+ V+ A +++ L AK I L
Sbjct: 209 GRIVEKKVGKKVFNDVAIMMVEAGATEGVIDKISEGKPAPTEEVVAEGLEAAKPVIELLC 268
Query: 232 KLQK 235
Q+
Sbjct: 269 LAQR 272
>gi|94995150|ref|YP_603248.1| polynucleotide phosphorylase/polyadenylase [Streptococcus pyogenes
MGAS10750]
gi|123080074|sp|Q1J4N2|PNP_STRPF RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|94548658|gb|ABF38704.1| Polyribonucleotide nucleotidyltransferase [Streptococcus pyogenes
MGAS10750]
Length = 710
Score = 141 bits (354), Expect = 1e-31, Method: Composition-based stats.
Identities = 43/244 (17%), Positives = 81/244 (33%), Gaps = 18/244 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56
+R GR+ +++R + GS L G T L+ T E ++ +
Sbjct: 317 IRPDGRKIDEIRPLDAVVDFLPKVHGSGLFTRGQTQALSVLTLAPMGETQIIDGLAPEYK 376
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y S G + A R+ G RAL V+ I +
Sbjct: 377 KRFLHHYNFPQYSVGETGRYGAAGRREIGHGALG----ERALEQVLPSLEEFPYAIRLVA 432
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V++++G + A+I +AL ++ + + + D
Sbjct: 433 EVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISD---------GTNYTVLTD 483
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T G I +Q + A + L AK +++ + +
Sbjct: 484 IQGLEDHFGDMDFKVAGTREG-ITALQMDIKIAGITPQILEEALAQAKKARFEILDVIEA 542
Query: 237 VISN 240
I+
Sbjct: 543 TIAE 546
Score = 103 bits (256), Expect = 2e-20, Method: Composition-based stats.
Identities = 42/231 (18%), Positives = 82/231 (35%), Gaps = 26/231 (11%)
Query: 13 EISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKV---PMWIRNTKHGWITAEYGMLPR 68
+ + V+K A G+ +V++GD+ +LT A + +K+ + + G P
Sbjct: 14 PLVVEVGQVAKQANGATVVRYGDSTVLTAAVMSKKMATGDFFPLQVNYEEKMYAAGKFPG 73
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
R GR + R+I R +R + Q+I + A
Sbjct: 74 GFMKR------EGRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDENASAPVA 127
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+ G+ +A G +A + G + G I++ D + ++
Sbjct: 128 AMFGSSLA-------------LSISDIPFNGPIAGVQVGYIDGEFIINPDKEQMEASLLE 174
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
+ I V+ A+ S+D L I +LI Q+ +++
Sbjct: 175 LTVAGSKE-AINMVESGAKE--LSEDIMLEALLKGHQAIQELIAFQEQIVA 222
>gi|305680822|ref|ZP_07403629.1| guanosine pentaphosphate synthetase I/polyribonucleotide
nucleotidyltransferase [Corynebacterium matruchotii ATCC
14266]
gi|305659027|gb|EFM48527.1| guanosine pentaphosphate synthetase I/polyribonucleotide
nucleotidyltransferase [Corynebacterium matruchotii ATCC
14266]
Length = 758
Score = 141 bits (354), Expect = 1e-31, Method: Composition-based stats.
Identities = 44/242 (18%), Positives = 86/242 (35%), Gaps = 14/242 (5%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKH 56
R+ GR +R++ + + A GS L + G+T ++ TL+ E+ + T
Sbjct: 372 FRIDGRGVTDIRDLGVEVDLIPRAHGSSLFERGETQIMGVTTLDMLKMEQQIDSLTPTTT 431
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P STG + + R+ G RAL V+ I
Sbjct: 432 KRYIHHYNFPPYSTGETGRVGSPKRREIGHGAL----AERALVPVIPSREEFPYAIRQVS 487
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+ + ++G T ++ + ++L++ ++ + V + G + D
Sbjct: 488 EALGSNGSTSMGSVCASTLSLYNAGVPLKAPVAGIAMGLVSD-----VVNGKERYVALTD 542
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED+ D+D T I +Q + L A+D ++ +
Sbjct: 543 ILGAEDAFGDMDFKVAGTADF-ITALQLDTKLDGIPSKVLADALAQARDARLTILDTMAE 601
Query: 237 VI 238
VI
Sbjct: 602 VI 603
Score = 75.7 bits (184), Expect = 5e-12, Method: Composition-based stats.
Identities = 39/244 (15%), Positives = 69/244 (28%), Gaps = 26/244 (10%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGD-THLLTTATLEEKV----PMWIRNTKHGWITAEYGM 65
R I +++ A GS + T LL+T T ++ + G
Sbjct: 35 RTIRFETGQLARQAGGSVTTYLDEDTMLLSTVTASKQPREGFDFFPLTVDVEERMYAAGR 94
Query: 66 LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125
+P S R GR + R+I R LR Q+++ I
Sbjct: 95 IPGSFFRR------EGRPSTEAILACRLIDRPLRPTFVKGLRNEVQVVVTVLSIDPKDMY 148
Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQV--LKGHVAAISCGMLCGYPIVDLDYGEDS 183
AI GA A + +++ + K + +
Sbjct: 149 DVVAINGASAATQLSGLPVSGPVGGVRMALIADKKHPKGQWVAFPTHAQHEEAIFELVVA 208
Query: 184 TIDVDANF--VMTDSGHIVEVQGSAERATF----------SQDHFFAMLNLAKDRIADLI 231
V+ + + I+ V+ A +++ L AK I L
Sbjct: 209 GRIVEKKVGKKVFNDVAIMMVEAGATEGVIDKISEGKPAPTEEVVAEGLEAAKPVIELLC 268
Query: 232 KLQK 235
Q+
Sbjct: 269 LAQR 272
>gi|119025278|ref|YP_909123.1| polynucleotide phosphorylase/polyadenylase [Bifidobacterium
adolescentis ATCC 15703]
gi|154486675|ref|ZP_02028082.1| hypothetical protein BIFADO_00496 [Bifidobacterium adolescentis
L2-32]
gi|187470939|sp|A1A008|PNP_BIFAA RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|118764862|dbj|BAF39041.1| polynucleotide nucleotidyl transferase [Bifidobacterium
adolescentis ATCC 15703]
gi|154084538|gb|EDN83583.1| hypothetical protein BIFADO_00496 [Bifidobacterium adolescentis
L2-32]
Length = 892
Score = 141 bits (354), Expect = 1e-31, Method: Composition-based stats.
Identities = 45/241 (18%), Positives = 85/241 (35%), Gaps = 14/241 (5%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +R +S + GS L + G+T +L TL E+ + +
Sbjct: 346 RIDGRGLRDIRTLSAEVDIVPRVHGSALFQRGETQILGVTTLNMLKMEQQIDALSGPQSK 405
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y M P STG + + R+ G +AL V+ I +
Sbjct: 406 RYMHNYEMPPYSTGETGRVGSPKRREIGHGAL----AEKALVPVLPSREEFPYAIRQVSE 461
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
I ++G T ++ + ++L ++ + V + G + D+
Sbjct: 462 AIGSNGSTSMGSVCASTLSLLAAGVPLKAPVAGIAMGLV-----SGDVDGQHIYKTLTDI 516
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED+ D+D T I +Q + D + L AK+ ++++ +
Sbjct: 517 LGAEDAFGDMDFKVAGTSEF-ITALQLDTKLDGIPADILASALQQAKEARTTILEVINEC 575
Query: 238 I 238
I
Sbjct: 576 I 576
>gi|15900497|ref|NP_345101.1| polynucleotide phosphorylase/polyadenylase [Streptococcus
pneumoniae TIGR4]
gi|81532195|sp|Q97S28|PNP_STRPN RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|14972063|gb|AAK74741.1| polyribonucleotide nucleotidyltransferase [Streptococcus pneumoniae
TIGR4]
Length = 737
Score = 141 bits (354), Expect = 1e-31, Method: Composition-based stats.
Identities = 42/244 (17%), Positives = 80/244 (32%), Gaps = 18/244 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56
+R GR+ +++R + GS L G T L+ T E ++ +
Sbjct: 317 VRPDGRKVDEIRPLDAVVDFLPRVHGSGLFTRGQTQALSVLTLAPMGETQIIDGLDPEYK 376
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y S G + A R+ G RAL V+ I +
Sbjct: 377 KRFMHHYNFPQYSVGETGRYGAPGRREIGHGALG----ERALAQVLPSLEEFPYAIRLVA 432
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V++++G + A+I +AL ++ + + + D
Sbjct: 433 EVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISD---------GNNYTVLTD 483
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T G I +Q + + + L AK +++ + +
Sbjct: 484 IQGLEDHFGDMDFKVAGTRDG-ITALQMDIKIQGITAEILTEALAQAKKARFEILDVIEA 542
Query: 237 VISN 240
I
Sbjct: 543 TIPE 546
Score = 112 bits (280), Expect = 4e-23, Method: Composition-based stats.
Identities = 42/232 (18%), Positives = 85/232 (36%), Gaps = 26/232 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKV---PMWIRNTKHGWITAEYGMLP 67
RE+ + V+K A GS +V++G++ +LT A + +K+ + + G P
Sbjct: 13 RELIVETGQVAKQANGSVVVRYGESTVLTAAVMSKKMATGDFFPLQVNYEEKMYAAGKFP 72
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R GR + R+I R +R + Q+I +
Sbjct: 73 GGFMKR------EGRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDENASAPM 126
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
AA+ G+ +A G +A + G + G I++ + +
Sbjct: 127 AAMFGSSLA-------------LSISDIPFDGPIAGVQVGYVDGQIIINPSQEQAEQSLL 173
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
+ T I V+ A+ S++ L + + +LI Q+++++
Sbjct: 174 ELTVAGTKH-AINMVESGAKE--LSEEIMLEALLKGHEAVKELIAFQEEIVA 222
>gi|251797391|ref|YP_003012122.1| polyribonucleotide nucleotidyltransferase [Paenibacillus sp. JDR-2]
gi|247545017|gb|ACT02036.1| Polyribonucleotide nucleotidyltransferase [Paenibacillus sp. JDR-2]
Length = 698
Score = 141 bits (354), Expect = 1e-31, Method: Composition-based stats.
Identities = 44/244 (18%), Positives = 80/244 (32%), Gaps = 18/244 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56
+R GR ++R I + GS L G T L+ T + ++ I +
Sbjct: 312 VRPDGRALEEIRPIECDVALLPRTHGSGLFTRGQTQALSICTLGALGDVQILDGISPEET 371
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P S G R+ G RAL V+ I +
Sbjct: 372 KRFMHHYNFPPFSVGEARPLRPPGRREIGHGALG----ERALSKVIPSETEFPYTIRLVS 427
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V++++G T A+I + +A+ D ++ + + G +I
Sbjct: 428 EVLESNGSTSQASICASTLAMMDAGVPIKAPVAGIAMGLIKDGDHFSILSD--------- 478
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T G + +Q + + L A+ ++
Sbjct: 479 IQGMEDHLGDMDFKVAGTAQG-VTAIQMDIKINGIDRAILSQALEQARIGRMHILGKMTA 537
Query: 237 VISN 240
V+S
Sbjct: 538 VMSQ 541
Score = 108 bits (269), Expect = 8e-22, Method: Composition-based stats.
Identities = 36/229 (15%), Positives = 78/229 (34%), Gaps = 26/229 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATL---EEKVPMWIRNTKHGWITAEYGMLP 67
R + L ++K A + V++GDT +L T T + + + + G +P
Sbjct: 11 RTLVLETGRLAKQANAAVTVRYGDTVVLCTVTASAEPKDLDFFPLTVNYEERLYAVGKIP 70
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R GR ++ R+ R +R + Q+ + +
Sbjct: 71 GGFIKR------EGRPSEKAILSSRLTDRPIRPLFPEGFRNDVQVANIVMSVDQNCTPEI 124
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
AA+ G A G + ++ G + G I++ +++ ++
Sbjct: 125 AAMIGTSAA-------------LSISDVPFNGPIGGVNVGRVNGQFIINPTVEQEAETEI 171
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
T I+ V+ AE ++D + D I ++ + ++
Sbjct: 172 FVTVAGTKD-AIMMVE--AEGNEVAEDVMLEAIMFGHDEIKKIVAMIEE 217
>gi|226366103|ref|YP_002783886.1| polynucleotide phosphorylase/polyadenylase [Rhodococcus opacus B4]
gi|257096705|sp|C1B324|PNP_RHOOB RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|226244593|dbj|BAH54941.1| guanosine pentaphosphate synthetase/polynucleotide phosphorylase
[Rhodococcus opacus B4]
Length = 757
Score = 141 bits (354), Expect = 1e-31, Method: Composition-based stats.
Identities = 45/242 (18%), Positives = 84/242 (34%), Gaps = 14/242 (5%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKH 56
R+ GR +R +S + A GS L + G+T +L TL+ + +
Sbjct: 356 FRIDGRGITDIRSLSAEVAIVPRAHGSALFERGETQILGVTTLDMVKMAQQVDSLGPETT 415
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P STG + + R+ G RAL V+ I
Sbjct: 416 KRYMHHYNFPPYSTGETGRVGSPKRREIGHGAL----AERALMPVLPSVEEFPYAIRQVS 471
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+ + ++G T ++ + +AL + ++ + V G + D
Sbjct: 472 EALSSNGSTSMGSVCASTLALLNAGVPLKAPVAGIAMGLVSDQ-----VDGETRYVALTD 526
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED+ D+D T + +Q + L+ AKD A ++++ +
Sbjct: 527 ILGAEDAFGDMDFKVAGTKDF-VTALQLDTKLDGIPSKVLAGALSQAKDARATILEVMAE 585
Query: 237 VI 238
I
Sbjct: 586 AI 587
>gi|158339001|ref|YP_001520178.1| polynucleotide phosphorylase/polyadenylase [Acaryochloris marina
MBIC11017]
gi|158309242|gb|ABW30859.1| polyribonucleotide nucleotidyltransferase [Acaryochloris marina
MBIC11017]
Length = 646
Score = 141 bits (354), Expect = 1e-31, Method: Composition-based stats.
Identities = 43/243 (17%), Positives = 83/243 (34%), Gaps = 19/243 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKY-AEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTK 55
+R+ GR+ +++R IS V GS L G T +L+ AT + + +
Sbjct: 252 VRVDGRKLDEVRPISCNVGVLPQRVHGSGLFNRGLTQVLSIATLGTPGDAQEMDDLHPDS 311
Query: 56 HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115
Y P S G + R+ G RAL ++ + +
Sbjct: 312 QKRYLHHYNFPPYSVGETRPMRSPGRREVGHGAL----AERALLPMLPSKEEFPYVLRVV 367
Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIV 175
+V+ ++G T ++ G+ ++L D + + + + +G +
Sbjct: 368 SEVLSSNGSTSMGSVCGSTLSLMDAGVPLAKPVSGAAMGLIKEGEEVRVLTD-------- 419
Query: 176 DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
+ ED D+D T G I +Q + S ++ AK ++
Sbjct: 420 -IQGIEDFLGDMDFKVAGTADG-ITALQMDMKITGLSMKVIAEAIHQAKPARLHILDKML 477
Query: 236 DVI 238
I
Sbjct: 478 ATI 480
Score = 64.5 bits (155), Expect = 1e-08, Method: Composition-based stats.
Identities = 34/161 (21%), Positives = 62/161 (38%), Gaps = 16/161 (9%)
Query: 80 SGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVALHD 139
GR ++ R+I R +R + QI+ + A+TGA VA
Sbjct: 9 EGRPPEKATLTCRLIDRPMRPLFPNWLRDDLQIVATTISMDEQVPPDVLAVTGASVATLL 68
Query: 140 CLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHI 199
KG +AA+ G++ I++ Y E S ++D + G +
Sbjct: 69 AKI-------------PFKGPMAAVRVGLVGDDFIINPTYEEISEGELDLVVAGSPDG-V 114
Query: 200 VEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
+ V+ A + ++ + + DLIK QK++I+
Sbjct: 115 IMVEAGANEVA--EQDMIEAIDFGYEVVCDLIKAQKELIAE 153
>gi|320352955|ref|YP_004194294.1| RNAse PH [Desulfobulbus propionicus DSM 2032]
gi|320121457|gb|ADW17003.1| RNAse PH [Desulfobulbus propionicus DSM 2032]
Length = 235
Score = 140 bits (353), Expect = 1e-31, Method: Composition-based stats.
Identities = 107/233 (45%), Positives = 147/233 (63%), Gaps = 3/233 (1%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR R + +R S+ V +A+GS L++ G+TH+L T+E++VP ++++ GWIT
Sbjct: 1 MRSGERSADALRPFSVEYGVQPHADGSVLIRMGNTHVLCGVTVEDRVPPFLKDKGQGWIT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLP +T +R +REAVSG GR+ EIQR+IGR+LR +VDLS LG + +DCDV+
Sbjct: 61 AEYGMLPCATHSRGRREAVSG-LSGRTHEIQRLIGRSLRMMVDLSLLGEHTLRVDCDVLN 119
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTR A+ITG +A+ L M + + VAAIS G++ G P++DLDY
Sbjct: 120 ADGGTRCASITGGALAVKMALARMVER--GRLPALPPLLPVAAISAGVVAGQPVLDLDYA 177
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
EDS+ +VDANFVM+ G +EVQ +AE F F AM LA L L
Sbjct: 178 EDSSAEVDANFVMSGDGRWIEVQSTAEGGPFHPQLFTAMAELAARGTGQLFGL 230
>gi|303232220|ref|ZP_07318919.1| polyribonucleotide nucleotidyltransferase [Atopobium vaginae
PB189-T1-4]
gi|302481630|gb|EFL44691.1| polyribonucleotide nucleotidyltransferase [Atopobium vaginae
PB189-T1-4]
Length = 760
Score = 140 bits (353), Expect = 1e-31, Method: Composition-based stats.
Identities = 45/241 (18%), Positives = 84/241 (34%), Gaps = 18/241 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR ++R + + GS L + G T +L+ ATL E + I +
Sbjct: 319 RVDGRSATEVRPLMIKPDYLPLVHGSGLFQRGQTQVLSVATLGMLSEWQRLDTIEPQEGK 378
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P TG + + R+ G RAL V+ I + +
Sbjct: 379 RYMHHYNFPPYCTGETGRLGSPKRREIGHGNL----AERALLPVIPSEDEFPYAIRVVSE 434
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
V++++G + A+ G+ +AL D + + + + + + D+
Sbjct: 435 VMESNGSSSMASTCGSTLALMDAGVPIVRPVSGVAMGLIQE---------EGKTVVLTDI 485
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T G I +Q + + + L A +++
Sbjct: 486 QGLEDFLGDMDFKVTGTTKG-ITAMQMDNKATGLTPEILRQALQQAHVGRMEILDAMLAQ 544
Query: 238 I 238
I
Sbjct: 545 I 545
Score = 66.4 bits (160), Expect = 3e-09, Method: Composition-based stats.
Identities = 41/226 (18%), Positives = 70/226 (30%), Gaps = 24/226 (10%)
Query: 15 SLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKV---PMWIRNTKHGWITAEYGMLPRST 70
L ++K A G CLV GD+ + T + ++ + G +P
Sbjct: 16 KLETGELAKQATGECLVSCGDSTVNVTVVVSKERKDYDFFPLTVDFIEKMYAVGRIPGGY 75
Query: 71 GNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAI 130
R R ++ RMI R +R QI+ V T +
Sbjct: 76 LKR------ESRPTEKATLTARMIDRPIRPAFPDGFRNEVQIVAMPLVADQFNPVDTICV 129
Query: 131 TGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDAN 190
GA A+ E I G IV+ Y E D+D
Sbjct: 130 MGASCAMRTGGVPFEGPLA-----------CVRIGRNTQTGEFIVNPTYEERKHSDLDLE 178
Query: 191 FVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ + I ++ +A+ S++ + + + IA Q+
Sbjct: 179 LAGSATF-ISMLEAAAQE--ISEEDMLSAMAFGQQAIAAFCAEQEK 221
>gi|307710641|ref|ZP_07647074.1| polyribonucleotide nucleotidyltransferase [Streptococcus mitis
SK564]
gi|307618584|gb|EFN97727.1| polyribonucleotide nucleotidyltransferase [Streptococcus mitis
SK564]
Length = 737
Score = 140 bits (353), Expect = 1e-31, Method: Composition-based stats.
Identities = 42/244 (17%), Positives = 80/244 (32%), Gaps = 18/244 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56
+R GR+ +++R + GS L G T L+ T E ++ +
Sbjct: 317 VRPDGRKVDEIRPLDAVVDFLPRVHGSGLFTRGQTQALSVLTLAPMGETQIIDGLDPEYK 376
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y S G + A R+ G RAL V+ I +
Sbjct: 377 KRFMHHYNFPQYSVGETGRYGAPGRREIGHGALG----ERALAQVLPSLEEFPYAIRLVA 432
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V++++G + A+I +AL ++ + + + D
Sbjct: 433 EVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISD---------GNNYTVLTD 483
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T G I +Q + + + L AK +++ + +
Sbjct: 484 IQGLEDHFGDMDFKVAGTRDG-ITALQMDIKIQGITAEILTEALAQAKKARFEILDVIEA 542
Query: 237 VISN 240
I
Sbjct: 543 TIPE 546
Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats.
Identities = 41/232 (17%), Positives = 85/232 (36%), Gaps = 26/232 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKV---PMWIRNTKHGWITAEYGMLP 67
RE+ + V+K A G+ +V++G++ +LT A + +K+ + + G P
Sbjct: 13 RELIVETGQVAKQANGAVVVRYGESTVLTAAVMSKKMATGDFFPLQVNYEEKMYAAGKFP 72
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R GR + R+I R +R + Q+I +
Sbjct: 73 GGFMKR------EGRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDENASAPM 126
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
AA+ G+ +A G +A + G + G I++ + +
Sbjct: 127 AAMFGSSLA-------------LSISDIPFDGPIAGVQVGYVDGQIIINPSQEQAEQSLL 173
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
+ T I V+ A+ S++ L + + +LI Q+++++
Sbjct: 174 ELTVAGTKH-AINMVESGAKE--LSEEIMLEALLKGHEAVKELIAFQEEIVA 222
>gi|225858425|ref|YP_002739935.1| polynucleotide phosphorylase/polyadenylase [Streptococcus
pneumoniae 70585]
gi|254782737|sp|C1C5V9|PNP_STRP7 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|225720166|gb|ACO16020.1| polyribonucleotide nucleotidyltransferase
(Polynucleotidephosphorylase) (PNPase) (Vegetative
protein 15) (VEG15) [Streptococcus pneumoniae 70585]
gi|332202469|gb|EGJ16538.1| polyribonucleotide nucleotidyltransferase [Streptococcus pneumoniae
GA41317]
Length = 737
Score = 140 bits (353), Expect = 1e-31, Method: Composition-based stats.
Identities = 42/244 (17%), Positives = 80/244 (32%), Gaps = 18/244 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56
+R GR+ +++R + GS L G T L+ T E ++ +
Sbjct: 317 VRPDGRKVDEIRPLDAVVDFLPRVHGSGLFTRGQTQALSVLTLAPMGETQIIDGLDPEYK 376
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y S G + A R+ G RAL V+ I +
Sbjct: 377 KRFMHHYNFPQYSVGETGRYGAPGRREIGHGALG----ERALAQVLPSLEEFPYAIRLVA 432
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V++++G + A+I +AL ++ + + + D
Sbjct: 433 EVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISD---------GNNYTVLTD 483
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T G I +Q + + + L AK +++ + +
Sbjct: 484 IQGLEDHFGDMDFKVAGTRDG-ITALQMDIKIQGITAEILTEALAQAKKARFEILDVIEA 542
Query: 237 VISN 240
I
Sbjct: 543 TIPE 546
Score = 112 bits (280), Expect = 4e-23, Method: Composition-based stats.
Identities = 42/232 (18%), Positives = 85/232 (36%), Gaps = 26/232 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKV---PMWIRNTKHGWITAEYGMLP 67
RE+ + V+K A GS +V++G++ +LT A + +K+ + + G P
Sbjct: 13 RELIVETGQVAKQANGSVVVRYGESTVLTAAVMSKKMATGDFFPLQVNYEEKMYAAGKFP 72
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R GR + R+I R +R + Q+I +
Sbjct: 73 GGFMKR------EGRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDENASAPM 126
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
AA+ G+ +A G +A + G + G I++ + +
Sbjct: 127 AAMFGSSLA-------------LSISDIPFDGPIAGVQVGYVDGQIIINPSQEQAEQSLL 173
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
+ T I V+ A+ S++ L + + +LI Q+++++
Sbjct: 174 ELTVAGTKH-AINMVESGAKE--LSEEIMLEALLKGHEAVKELIAFQEEIVA 222
>gi|183603864|ref|ZP_02722383.2| polyribonucleotide nucleotidyltransferase
(Polynucleotidephosphorylase) (PNPase) (Vegetative
protein 15) (VEG15) [Streptococcus pneumoniae MLV-016]
gi|307067208|ref|YP_003876174.1| hypothetical protein SPAP_0579 [Streptococcus pneumoniae AP200]
gi|183577765|gb|EDT98293.1| polyribonucleotide nucleotidyltransferase
(Polynucleotidephosphorylase) (PNPase) (Vegetative
protein 15) (VEG15) [Streptococcus pneumoniae MLV-016]
gi|306408745|gb|ADM84172.1| hypothetical protein SPAP_0579 [Streptococcus pneumoniae AP200]
Length = 737
Score = 140 bits (353), Expect = 1e-31, Method: Composition-based stats.
Identities = 42/244 (17%), Positives = 80/244 (32%), Gaps = 18/244 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56
+R GR+ +++R + GS L G T L+ T E ++ +
Sbjct: 317 VRPDGRKVDEIRPLDAVVDFLPRVHGSGLFTRGQTQALSVLTLAPMGETQIIDGLDPEYK 376
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y S G + A R+ G RAL V+ I +
Sbjct: 377 KRFMHHYNFPQYSVGETGRYGAPGRREIGHGALG----ERALAQVLPSLEEFPYAIRLVA 432
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V++++G + A+I +AL ++ + + + D
Sbjct: 433 EVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISD---------GNNYTVLTD 483
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T G I +Q + + + L AK +++ + +
Sbjct: 484 IQGLEDHFGDMDFKVAGTRDG-ITALQMDIKIQGITAEILTEALAQAKKARFEILDVIEA 542
Query: 237 VISN 240
I
Sbjct: 543 TIPE 546
Score = 111 bits (277), Expect = 9e-23, Method: Composition-based stats.
Identities = 42/232 (18%), Positives = 85/232 (36%), Gaps = 26/232 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKV---PMWIRNTKHGWITAEYGMLP 67
RE+ + V+K A GS +V++G++ +LT A + +K+ + + G P
Sbjct: 13 RELIVETGQVAKQANGSVVVRYGESTVLTAAVMSKKMATGDFFPLQVNYEEKMYAAGKFP 72
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R GR + R+I R +R + Q+I +
Sbjct: 73 GGFMKR------EGRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDENASAPM 126
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
AA+ G+ +A G +A + G + G I++ + +
Sbjct: 127 AAMFGSSLA-------------LSISDIPFDGPIAGVQVGYVDGQIIINPSQEQAEQSLL 173
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
+ T I V+ A+ S++ L + + +LI Q+++++
Sbjct: 174 ELTVAGTKH-AINMVESGAKE--LSEEIMLEALLKGHEAVKELITFQEEIVA 222
>gi|331266884|ref|YP_004326514.1| polyribonucleotide nucleotidyltransferase [Streptococcus oralis
Uo5]
gi|326683556|emb|CBZ01174.1| polyribonucleotide nucleotidyltransferase [Streptococcus oralis
Uo5]
Length = 737
Score = 140 bits (353), Expect = 1e-31, Method: Composition-based stats.
Identities = 42/244 (17%), Positives = 80/244 (32%), Gaps = 18/244 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56
+R GR+ +++R + GS L G T L+ T E ++ +
Sbjct: 317 VRPDGRKVDEIRPLDAVVDFLPRVHGSGLFTRGQTQALSVLTLAPMGETQIIDGLDPEYK 376
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y S G + A R+ G RAL V+ I +
Sbjct: 377 KRFMHHYNFPQYSVGETGRYGAPGRREIGHGALG----ERALAQVLPSLEEFPYAIRLVA 432
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V++++G + A+I +AL ++ + + + D
Sbjct: 433 EVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISD---------GNNYTVLTD 483
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T G I +Q + + + L AK +++ + +
Sbjct: 484 IQGLEDHFGDMDFKVAGTRDG-ITALQMDIKIQGITAEILTEALAQAKKARFEILDVIEA 542
Query: 237 VISN 240
I
Sbjct: 543 TIPE 546
Score = 112 bits (280), Expect = 4e-23, Method: Composition-based stats.
Identities = 42/232 (18%), Positives = 85/232 (36%), Gaps = 26/232 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKV---PMWIRNTKHGWITAEYGMLP 67
RE+ + V+K A GS +V++G++ +LT A + +K+ + + G P
Sbjct: 13 RELVVETGQVAKQANGSVVVRYGESTVLTAAVMSKKMATGDFFPLQVNYEEKMYAAGKFP 72
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R GR + R+I R +R + Q+I +
Sbjct: 73 GGFMKR------EGRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDENASAPM 126
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
AA+ G+ +A G +A + G + G I++ + +
Sbjct: 127 AAMFGSSLA-------------LSISDIPFDGPIAGVQVGYVDGQIIINPSQEQAERSLL 173
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
+ T I V+ A+ S++ L + + +LI Q+++++
Sbjct: 174 ELTVAGTKH-AINMVESGAKE--LSEEIMLEALLKGHEAVKELIAFQEEIVA 222
>gi|300770058|ref|ZP_07079937.1| polyribonucleotide nucleotidyltransferase [Sphingobacterium
spiritivorum ATCC 33861]
gi|300762534|gb|EFK59351.1| polyribonucleotide nucleotidyltransferase [Sphingobacterium
spiritivorum ATCC 33861]
Length = 729
Score = 140 bits (353), Expect = 1e-31, Method: Composition-based stats.
Identities = 48/243 (19%), Positives = 84/243 (34%), Gaps = 16/243 (6%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
+RL GR +R I A GS + G+T LT+ TL +E++ +
Sbjct: 318 IRLDGRDVRTVRPIWSEVNYLPAAHGSAVFTRGETQSLTSVTLGAKDDEQMIDGAFINGY 377
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y STG R+ G R+L+ V+ A I +
Sbjct: 378 NKFILHYNFPAFSTGEVRPNRGPGRREVGHGNL----AMRSLKQVLPADAENPYTIRVVS 433
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
D+++++G + A + +AL D ++ + + + + D
Sbjct: 434 DILESNGSSSMATVCAGTLALMDAGVKLKAPVSGIAMGLITDEKTG-------KYAILSD 486
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T G IV Q + + L+ AK+ ++
Sbjct: 487 ILGDEDHLGDMDFKVTGTSKG-IVACQMDLKINGLKWEVLTQALDQAKEARLHILGEMAK 545
Query: 237 VIS 239
IS
Sbjct: 546 TIS 548
Score = 91.8 bits (226), Expect = 7e-17, Method: Composition-based stats.
Identities = 39/228 (17%), Positives = 73/228 (32%), Gaps = 27/228 (11%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRN----TKHGWITAEYGMLPR 68
I L+ ++K A+GS +VK GDT LL T + + + A G +P
Sbjct: 18 IELSTGKLAKQADGSVVVKQGDTMLLATVVSAREAKPGVDFLPLSVDYQEKYAATGRIPG 77
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
R R I R++ RALR + + Q +
Sbjct: 78 GFLRR------EARLSDYEVLISRLVDRALRPLFPENYHADTQ-------------VMIS 118
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
I+ + D L + + G ++ + + G +++ + ++
Sbjct: 119 LISADKDIMPDALAGLAASAAIAVSDIPFNGPISEVRVAKIDGQLVINPKLSDLERATLE 178
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ I V+ E S+ + A + I I Q +
Sbjct: 179 FVVAGSAQD-IGMVE--GEANEISEAEMVEAIAFAHEAIKKQIAAQVE 223
>gi|294786716|ref|ZP_06751970.1| polyribonucleotide nucleotidyltransferase [Parascardovia
denticolens F0305]
gi|294485549|gb|EFG33183.1| polyribonucleotide nucleotidyltransferase [Parascardovia
denticolens F0305]
Length = 922
Score = 140 bits (353), Expect = 1e-31, Method: Composition-based stats.
Identities = 47/241 (19%), Positives = 85/241 (35%), Gaps = 14/241 (5%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR + +R +S V GS L + G+T +L TL E+ +
Sbjct: 346 RIDGRGLSDIRTLSAEVDVVPRVHGSALFQRGETQILGVTTLNMLKMEQTTDALSGPDTK 405
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y M P STG + + R+ G RAL V+ I +
Sbjct: 406 RYMHNYEMPPYSTGETGRVGSPKRREIGHGAL----AERALIPVLPSREEFPYAIRQVSE 461
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
I ++G T ++ + ++L D ++ + V + G + + D+
Sbjct: 462 AIGSNGSTSMGSVCASTMSLLDAGVPLKAPVAGIAMGLV-----SGEVDGQMVYKTLTDI 516
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED+ D+D T I +Q + D L A + ++++ +
Sbjct: 517 LGAEDAFGDMDFKVAGTSEF-ITALQLDTKLDGIPADILAGALQQAYEARTTILEVIDEC 575
Query: 238 I 238
I
Sbjct: 576 I 576
>gi|237650139|ref|ZP_04524391.1| polynucleotide phosphorylase/polyadenylase [Streptococcus
pneumoniae CCRI 1974]
gi|237821670|ref|ZP_04597515.1| polynucleotide phosphorylase/polyadenylase [Streptococcus
pneumoniae CCRI 1974M2]
Length = 737
Score = 140 bits (353), Expect = 1e-31, Method: Composition-based stats.
Identities = 42/244 (17%), Positives = 80/244 (32%), Gaps = 18/244 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56
+R GR+ +++R + GS L G T L+ T E ++ +
Sbjct: 317 VRPDGRKVDEIRPLDAVVDFLPRVHGSGLFTRGQTQALSVLTLAPMGETQIIDGLDPEYK 376
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y S G + A R+ G RAL V+ I +
Sbjct: 377 KRFMHHYNFPQYSVGETGRYGAPGRREIGHGALG----ERALAQVLPSLEEFPYAIRLVA 432
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V++++G + A+I +AL ++ + + + D
Sbjct: 433 EVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISD---------GNNYTVLTD 483
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T G I +Q + + + L AK +++ + +
Sbjct: 484 IQGLEDHFGDMDFKVAGTRDG-ITALQMDIKIQGITAEILTEALAQAKKARFEILDVIEA 542
Query: 237 VISN 240
I
Sbjct: 543 TIPE 546
Score = 112 bits (280), Expect = 4e-23, Method: Composition-based stats.
Identities = 42/232 (18%), Positives = 85/232 (36%), Gaps = 26/232 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKV---PMWIRNTKHGWITAEYGMLP 67
RE+ + V+K A GS +V++G++ +LT A + +K+ + + G P
Sbjct: 13 RELIVETGQVAKQANGSVVVRYGESTVLTAAVMSKKMATGDFFPLQVNYEEKMYAAGKFP 72
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R GR + R+I R +R + Q+I +
Sbjct: 73 GGFMKR------EGRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDENASAPM 126
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
AA+ G+ +A G +A + G + G I++ + +
Sbjct: 127 AAMFGSSLA-------------LSISDIPFDGPIAGVQVGYVDGQIIINPSQEQAEQSLL 173
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
+ T I V+ A+ S++ L + + +LI Q+++++
Sbjct: 174 ELTVAGTKH-AINMVESGAKE--LSEEIMLEALLKGHEAVKELIAFQEEIVA 222
>gi|227538513|ref|ZP_03968562.1| polyribonucleotide nucleotidyltransferase [Sphingobacterium
spiritivorum ATCC 33300]
gi|227241432|gb|EEI91447.1| polyribonucleotide nucleotidyltransferase [Sphingobacterium
spiritivorum ATCC 33300]
Length = 729
Score = 140 bits (353), Expect = 1e-31, Method: Composition-based stats.
Identities = 48/243 (19%), Positives = 84/243 (34%), Gaps = 16/243 (6%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
+RL GR +R I A GS + G+T LT+ TL +E++ +
Sbjct: 318 IRLDGRDVRTVRPIWSEVNYLPAAHGSAVFTRGETQSLTSVTLGAKDDEQMIDGAFINGY 377
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y STG R+ G R+L+ V+ A I +
Sbjct: 378 NKFILHYNFPAFSTGEVRPNRGPGRREVGHGNL----AMRSLKQVLPADAENPYTIRVVS 433
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
D+++++G + A + +AL D ++ + + + + D
Sbjct: 434 DILESNGSSSMATVCAGTLALMDAGVKLKAPVSGIAMGLITDEKTG-------KYAILSD 486
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T G IV Q + + L+ AK+ ++
Sbjct: 487 ILGDEDHLGDMDFKVTGTSKG-IVACQMDLKINGLKWEVLTQALDQAKEARLHILGEMAK 545
Query: 237 VIS 239
IS
Sbjct: 546 TIS 548
Score = 90.7 bits (223), Expect = 2e-16, Method: Composition-based stats.
Identities = 39/228 (17%), Positives = 73/228 (32%), Gaps = 27/228 (11%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRN----TKHGWITAEYGMLPR 68
I L+ ++K A+GS +VK GDT LL T + + + A G +P
Sbjct: 18 IELSTGKLAKQADGSVVVKQGDTMLLATVVSAREAKPGVDFLPLSVDYQEKYAATGRIPG 77
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
R R I R++ RALR + + Q +
Sbjct: 78 GFLRR------EARLSDYEVLISRLVDRALRPLFPENYHADTQ-------------VMIS 118
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
I+ + D L + + G ++ + + G +++ + ++
Sbjct: 119 LISADKDIMPDALAGLAASAAIAVSDIPFNGPISEVRVAKIDGQLVINPKLSDLERATLE 178
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ I V+ E S+ + A + I I Q +
Sbjct: 179 FIVAGSAQD-IGMVE--GEANEISETEMVEAIAFAHEAIKKQIAAQVE 223
>gi|139474436|ref|YP_001129152.1| polynucleotide phosphorylase/polyadenylase [Streptococcus pyogenes
str. Manfredo]
gi|187611301|sp|A2RGH2|PNP_STRPG RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|134272683|emb|CAM30954.1| polyribonucleotide nucleotidyltransferase [Streptococcus pyogenes
str. Manfredo]
Length = 710
Score = 140 bits (353), Expect = 1e-31, Method: Composition-based stats.
Identities = 43/244 (17%), Positives = 81/244 (33%), Gaps = 18/244 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56
+R GR+ +++R + GS L G T L+ T E ++ +
Sbjct: 317 IRPDGRKIDEIRPLDAVVDFLPKVHGSGLFTRGQTQALSVLTLAPMGETQIIDGLAPEYK 376
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y S G + A R+ G RAL V+ I +
Sbjct: 377 KRFLHHYNFPQYSVGETGRYGAAGRREIGHGALG----ERALEQVLPSLEEFPYAIRLVA 432
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V++++G + A+I +AL ++ + + + D
Sbjct: 433 EVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISD---------GTNYTVLTD 483
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T G I +Q + A + L AK +++ + +
Sbjct: 484 IQGLEDHFGDMDFKVAGTREG-ITALQMDIKIAGITPQILEEALAQAKKARFEILDVIEA 542
Query: 237 VISN 240
I+
Sbjct: 543 TIAE 546
Score = 103 bits (256), Expect = 2e-20, Method: Composition-based stats.
Identities = 42/231 (18%), Positives = 82/231 (35%), Gaps = 26/231 (11%)
Query: 13 EISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKV---PMWIRNTKHGWITAEYGMLPR 68
+ + V+K A G+ +V++GD+ +LT A + +K+ + + G P
Sbjct: 14 PLVVEVGQVAKQANGATVVRYGDSTVLTAAVMSKKMATGDFFPLQVNYEEKMYAAGKFPG 73
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
R GR + R+I R +R + Q+I + A
Sbjct: 74 GFMKR------EGRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDENASAPVA 127
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+ G+ +A G +A + G + G I++ D + ++
Sbjct: 128 AMFGSSLA-------------LSISDIPFNGPIAGVQVGYIDGEFIINPDKEQMEASLLE 174
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
+ I V+ A+ S+D L I +LI Q+ +++
Sbjct: 175 LTVAGSKE-AINMVESGAKE--LSEDIMLEALLKGHQAIQELIAFQEQIVA 222
>gi|111225112|ref|YP_715906.1| polynucleotide phosphorylase/polyadenylase [Frankia alni ACN14a]
gi|123142666|sp|Q0RDT1|PNP_FRAAA RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|111152644|emb|CAJ64385.1| polynucleotide phosphorylase, has polyadenylase activity [Frankia
alni ACN14a]
Length = 729
Score = 140 bits (353), Expect = 1e-31, Method: Composition-based stats.
Identities = 40/244 (16%), Positives = 81/244 (33%), Gaps = 18/244 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKH 56
+R+ GR ++RE+S GS L + G+T +L TL E+ + +
Sbjct: 338 VRIDGRSTTEIRELSAEVDYIPRVHGSALFERGETQILGVTTLAMLRMEQTVDTLNPDRT 397
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P STG + + R+ G RAL V+ I
Sbjct: 398 KRYMHNYNFPPYSTGETGRVGSPKRREIGHGAL----AERALLPVLPSREEFPYAIRQVS 453
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+ + ++G T ++ + ++L + ++ + V
Sbjct: 454 EALGSNGSTSMGSVCASTLSLLNAGVPLKAPVAGIAMGLVHADDAYVTLTD--------- 504
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED+ D+D T + +Q + + L A+ ++ + +
Sbjct: 505 ILGAEDAYGDMDFKVAGTRDF-VTALQLDTKLDGIPASVLASALQQARGARLAILDVMAE 563
Query: 237 VISN 240
I +
Sbjct: 564 AIGS 567
Score = 90.7 bits (223), Expect = 2e-16, Method: Composition-based stats.
Identities = 43/245 (17%), Positives = 73/245 (29%), Gaps = 39/245 (15%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT----KHGWITAEYGML 66
R + +++ A GS + GDT +L+ T+ ++ + G +
Sbjct: 19 RTVRFETGRLARQAAGSAVAYLGDTMVLSATTVSKQPKEQLDFFPLTVDVEERMYAAGRI 78
Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
P S R GR + R+I R LR Q++ + D
Sbjct: 79 PGSFFRR------EGRPSEDAILTCRLIDRPLRPSFAKGLRNEIQVVATVLALDPDTLYD 132
Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
AI A + G + A G + G I + E +
Sbjct: 133 VVAINAASAST-------------TLSGLPFTGPIGATRVGYVDGEWIAFPTHAELARAT 179
Query: 187 VDANFVM-----TDSGHIVEVQGSAERATF----------SQDHFFAMLNLAKDRIADLI 231
D I+ V+ A T +++ A L AK I +L
Sbjct: 180 FDMVVAGRVVEDGSDVAIMMVEAEATPGTVELIAGGAPAPTEEVVAAGLEAAKPAIRELC 239
Query: 232 KLQKD 236
+ Q +
Sbjct: 240 RAQSE 244
>gi|301799640|emb|CBW32198.1| polyribonucleotide nucleotidyltransferase [Streptococcus pneumoniae
OXC141]
Length = 737
Score = 140 bits (353), Expect = 1e-31, Method: Composition-based stats.
Identities = 42/244 (17%), Positives = 80/244 (32%), Gaps = 18/244 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56
+R GR+ +++R + GS L G T L+ T E ++ +
Sbjct: 317 VRPDGRKVDEIRPLDAVVDFLPRVHGSGLFTRGQTQALSVLTLAPMGETQIIDGLDPEYK 376
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y S G + A R+ G RAL V+ I +
Sbjct: 377 KRFMHHYNFPQYSVGETGRYGAPGRREIGHGALG----ERALAQVLPSLEEFPYAIRLVA 432
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V++++G + A+I +AL ++ + + + D
Sbjct: 433 EVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISD---------GNNYTVLTD 483
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T G I +Q + + + L AK +++ + +
Sbjct: 484 IQGLEDHFGDMDFKVAGTRDG-ITALQMDIKIQGITAEILTEALAQAKKARFEILDVIEA 542
Query: 237 VISN 240
I
Sbjct: 543 TIPE 546
Score = 112 bits (280), Expect = 4e-23, Method: Composition-based stats.
Identities = 42/232 (18%), Positives = 85/232 (36%), Gaps = 26/232 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKV---PMWIRNTKHGWITAEYGMLP 67
RE+ + V+K A GS +V++G++ +LT A + +K+ + + G P
Sbjct: 13 RELIVETGQVAKQANGSVVVRYGESTVLTAAVMSKKMATGDFFPLQVNYEEKMYAAGKFP 72
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R GR + R+I R +R + Q+I +
Sbjct: 73 GGFMKR------EGRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDENASAPM 126
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
AA+ G+ +A G +A + G + G I++ + +
Sbjct: 127 AAMFGSSLA-------------LSISDIPFDGPIAGVQVGYVDGQIIINPSQEQAEQSLL 173
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
+ T I V+ A+ S++ L + + +LI Q+++++
Sbjct: 174 ELTVAGTKH-AINMVESGAKE--LSEEIMLEALLKGHEAVKELIAFQEEIVA 222
>gi|183603099|ref|ZP_02710211.2| polyribonucleotide nucleotidyltransferase
(Polynucleotidephosphorylase) (PNPase) (Vegetative
protein 15) (VEG15) [Streptococcus pneumoniae
CDC1087-00]
gi|183571256|gb|EDT91784.1| polyribonucleotide nucleotidyltransferase
(Polynucleotidephosphorylase) (PNPase) (Vegetative
protein 15) (VEG15) [Streptococcus pneumoniae
CDC1087-00]
Length = 737
Score = 140 bits (353), Expect = 1e-31, Method: Composition-based stats.
Identities = 42/244 (17%), Positives = 80/244 (32%), Gaps = 18/244 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56
+R GR+ +++R + GS L G T L+ T E ++ +
Sbjct: 317 VRPDGRKVDEIRPLDAVVDFLPRVHGSGLFTRGQTQALSVLTLAPMGETQIIDGLDPEYK 376
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y S G + A R+ G RAL V+ I +
Sbjct: 377 KRFMHHYNFPQYSVGETGRYGAPGRREIGHGALG----ERALAQVLPSLEEFPYAIRLVA 432
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V++++G + A+I +AL ++ + + + D
Sbjct: 433 EVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISD---------GNNYTVLTD 483
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T G I +Q + + + L AK +++ + +
Sbjct: 484 IQGLEDHFGDMDFKVAGTRDG-ITALQMDIKIQGITAEILTEALAQAKKARFEILDVIEA 542
Query: 237 VISN 240
I
Sbjct: 543 TIPE 546
Score = 112 bits (280), Expect = 4e-23, Method: Composition-based stats.
Identities = 42/232 (18%), Positives = 85/232 (36%), Gaps = 26/232 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKV---PMWIRNTKHGWITAEYGMLP 67
RE+ + V+K A GS +V++G++ +LT A + +K+ + + G P
Sbjct: 13 RELIVETGQVAKQANGSVVVRYGESTVLTAAVMSKKMATGDFFPLQVNYEEKMYAAGKFP 72
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R GR + R+I R +R + Q+I +
Sbjct: 73 GGFMKR------EGRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDENASAPM 126
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
AA+ G+ +A G +A + G + G I++ + +
Sbjct: 127 AAMFGSSLA-------------LSISDIPFDGPIAGVQVGYVDGQIIINPSQEQAEQSLL 173
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
+ T I V+ A+ S++ L + + +LI Q+++++
Sbjct: 174 ELTVAGTKH-AINMVESGAKE--LSEEIMLEALLKGHEAVKELIAFQEEIVA 222
>gi|21911212|ref|NP_665480.1| polynucleotide phosphorylase/polyadenylase [Streptococcus pyogenes
MGAS315]
gi|28896590|ref|NP_802940.1| polynucleotide phosphorylase/polyadenylase [Streptococcus pyogenes
SSI-1]
gi|81758877|sp|Q8K5T4|PNP_STRP3 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|21905424|gb|AAM80283.1| putative polynucleotide phosphorylase alpha chain [Streptococcus
pyogenes MGAS315]
gi|28811844|dbj|BAC64773.1| putative polynucleotide phosphorylase, alpha chain [Streptococcus
pyogenes SSI-1]
Length = 710
Score = 140 bits (353), Expect = 1e-31, Method: Composition-based stats.
Identities = 43/244 (17%), Positives = 81/244 (33%), Gaps = 18/244 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56
+R GR+ +++R + GS L G T L+ T E ++ +
Sbjct: 317 IRPDGRKIDEIRPLDAVVDFLPKVHGSGLFTRGQTQALSVLTLAPMGETQIIDGLAPEYK 376
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y S G + A R+ G RAL V+ I +
Sbjct: 377 KRFLHHYNFPQYSVGETGRYGAAGRREIGHGALG----ERALEQVLPSLEEFPYAIRLVA 432
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V++++G + A+I +AL ++ + + + D
Sbjct: 433 EVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISD---------GTNYTVLTD 483
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T G I +Q + A + L AK +++ + +
Sbjct: 484 IQGLEDHFGDMDFKVAGTREG-ITALQMDIKIAGITPQILEEALAQAKKARFEILDVIEA 542
Query: 237 VISN 240
I+
Sbjct: 543 TIAE 546
Score = 102 bits (254), Expect = 4e-20, Method: Composition-based stats.
Identities = 41/231 (17%), Positives = 81/231 (35%), Gaps = 26/231 (11%)
Query: 13 EISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKV---PMWIRNTKHGWITAEYGMLPR 68
+ + V+K A G+ +V++GD+ +LT + +K+ + + G P
Sbjct: 14 PLVVEVGQVAKQANGATVVRYGDSTVLTATVMSKKMATGDFFPLQVNYEEKMYAAGKFPG 73
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
R GR + R+I R +R + Q+I + A
Sbjct: 74 GFMKR------EGRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDENASAPMA 127
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+ G+ +A G +A + G + G I++ D + ++
Sbjct: 128 AMFGSSLA-------------LSISDIPFNGPIAGVQVGYIDGEFIINPDKEQMEASLLE 174
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
+ I V+ A+ S+D L I +LI Q+ +++
Sbjct: 175 LTVAGSKE-AINMVESGAKE--LSEDIMLEALLKGHQAIQELIAFQEQIVA 222
>gi|307126791|ref|YP_003878822.1| polyribonucleotide nucleotidyltransferase [Streptococcus pneumoniae
670-6B]
gi|306483853|gb|ADM90722.1| polyribonucleotide nucleotidyltransferase [Streptococcus pneumoniae
670-6B]
gi|332077021|gb|EGI87483.1| polyribonucleotide nucleotidyltransferase [Streptococcus pneumoniae
GA17545]
Length = 737
Score = 140 bits (353), Expect = 1e-31, Method: Composition-based stats.
Identities = 42/244 (17%), Positives = 80/244 (32%), Gaps = 18/244 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56
+R GR+ +++R + GS L G T L+ T E ++ +
Sbjct: 317 VRPDGRKVDEIRPLDAVVDFLPRVHGSGLFTRGQTQALSVLTLAPMGETQIIDGLDPEYK 376
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y S G + A R+ G RAL V+ I +
Sbjct: 377 KRFMHHYNFPQYSVGETGRYGAPGRREIGHGALG----ERALAQVLPSLEEFPYAIRLVA 432
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V++++G + A+I +AL ++ + + + D
Sbjct: 433 EVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISD---------GNNYTVLTD 483
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T G I +Q + + + L AK +++ + +
Sbjct: 484 IQGLEDHFGDMDFKVAGTRDG-ITALQMDIKIQGITAEILTEALAQAKKARFEILDVIEA 542
Query: 237 VISN 240
I
Sbjct: 543 TIPE 546
Score = 111 bits (277), Expect = 9e-23, Method: Composition-based stats.
Identities = 41/232 (17%), Positives = 85/232 (36%), Gaps = 26/232 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKV---PMWIRNTKHGWITAEYGMLP 67
RE+ + V+K A GS +V++G++ +LT A + +K+ + + G P
Sbjct: 13 RELIVETGQVAKQANGSVVVRYGESTVLTAAVMSKKMATGDFFPLQVNYEEKMYAAGKFP 72
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R GR + R+I R +R + Q+I +
Sbjct: 73 GGFMKR------EGRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDENASAPM 126
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
AA+ G+ +A G +A + G + G I++ + +
Sbjct: 127 AAMFGSSLA-------------LSISDIPFDGPIAGVQVGYVDGQIIINPSQEQAEQSLL 173
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
+ T + V+ A+ S++ L + + +LI Q+++++
Sbjct: 174 ELTVAGTKH-AVNMVESGAKE--LSEEIMLEALLKGHEAVKELIAFQEEIVA 222
>gi|225860589|ref|YP_002742098.1| polynucleotide phosphorylase/polyadenylase [Streptococcus
pneumoniae Taiwan19F-14]
gi|298230931|ref|ZP_06964612.1| polynucleotide phosphorylase/polyadenylase [Streptococcus
pneumoniae str. Canada MDR_19F]
gi|298254667|ref|ZP_06978253.1| polynucleotide phosphorylase/polyadenylase [Streptococcus
pneumoniae str. Canada MDR_19A]
gi|254782741|sp|C1CQ76|PNP_STRZT RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|225728353|gb|ACO24204.1| polyribonucleotide nucleotidyltransferase
(Polynucleotidephosphorylase) (PNPase) (Vegetative
protein 15) (VEG15) [Streptococcus pneumoniae
Taiwan19F-14]
gi|327390327|gb|EGE88668.1| polyribonucleotide nucleotidyltransferase [Streptococcus pneumoniae
GA04375]
Length = 737
Score = 140 bits (353), Expect = 1e-31, Method: Composition-based stats.
Identities = 42/244 (17%), Positives = 80/244 (32%), Gaps = 18/244 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56
+R GR+ +++R + GS L G T L+ T E ++ +
Sbjct: 317 VRPDGRKVDEIRPLDAVVDFLPRVHGSGLFTRGQTQALSVLTLAPMGETQIIDGLDPEYK 376
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y S G + A R+ G RAL V+ I +
Sbjct: 377 KRFMHHYNFPQYSVGETGRYGAPGRREIGHGALG----ERALAQVLPSLEEFPYAIRLVA 432
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V++++G + A+I +AL ++ + + + D
Sbjct: 433 EVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISD---------GNNYTVLTD 483
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T G I +Q + + + L AK +++ + +
Sbjct: 484 IQGLEDHFGDMDFKVAGTRDG-ITALQMDIKIQGITAEILTEALAQAKKARFEILDVIEA 542
Query: 237 VISN 240
I
Sbjct: 543 TIPE 546
Score = 112 bits (279), Expect = 5e-23, Method: Composition-based stats.
Identities = 42/232 (18%), Positives = 85/232 (36%), Gaps = 26/232 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKV---PMWIRNTKHGWITAEYGMLP 67
RE+ + V+K A GS +V++G++ +LT A + +K+ + + G P
Sbjct: 13 RELIVETGQVAKQANGSVVVRYGESTVLTAAVMSKKMATGDFFPLQVNYEEKMYAAGKFP 72
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R GR + R+I R +R + Q+I +
Sbjct: 73 GGFMKR------EGRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDENASAPM 126
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
AA+ G+ +A G +A + G + G I++ + +
Sbjct: 127 AAMFGSSLA-------------LSISDIPFDGPIAGVQVGYVDGQIIINPSQEQAEQSLL 173
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
+ T I V+ A+ S++ L + + +LI Q+++++
Sbjct: 174 ELTVAGTKH-AINMVESGAKE--LSEEIMLEALLKGHEAVKELIAFQEEIVA 222
>gi|322411051|gb|EFY01959.1| polynucleotide phosphorylase/polyadenylase [Streptococcus
dysgalactiae subsp. dysgalactiae ATCC 27957]
Length = 714
Score = 140 bits (353), Expect = 1e-31, Method: Composition-based stats.
Identities = 43/244 (17%), Positives = 81/244 (33%), Gaps = 18/244 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56
+R GR+ +++R + GS L G T L+ T E ++ +
Sbjct: 317 IRPDGRKIDEIRPLDAVVDFLPKVHGSGLFTRGQTQALSVLTLAPMGETQIIDGLAPEYK 376
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y S G + A R+ G RAL V+ I +
Sbjct: 377 KRFLHHYNFPQYSVGETGRYGAAGRREIGHGALG----ERALEQVLPSLEEFPYAIRLVA 432
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V++++G + A+I +AL ++ + + + D
Sbjct: 433 EVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISD---------GTNYTVLTD 483
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T G I +Q + A + L AK +++ + +
Sbjct: 484 IQGLEDHFGDMDFKVAGTREG-ITALQMDIKIAGITPQILEEALAQAKKARFEILDVIEA 542
Query: 237 VISN 240
I+
Sbjct: 543 TIAE 546
Score = 101 bits (251), Expect = 8e-20, Method: Composition-based stats.
Identities = 41/231 (17%), Positives = 82/231 (35%), Gaps = 26/231 (11%)
Query: 13 EISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKV---PMWIRNTKHGWITAEYGMLPR 68
+ + V+K A G+ +V++G++ +LT A + +K+ + + G P
Sbjct: 14 PLVVEVGQVAKQANGATVVRYGESTVLTAAVMSKKMATGDFFPLQVNYEEKMYAAGKFPG 73
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
R GR + R+I R +R + Q+I + A
Sbjct: 74 GFMKR------EGRPSTDATLTARLIDRPIRPMFAEGFRNEVQVISTVLSYDENASAPMA 127
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+ G+ +A G +A + G + G I++ D + ++
Sbjct: 128 AMFGSSLA-------------LSISDIPFNGPIAGVQVGYIDGEFIINPDKEQMEASLLE 174
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
+ I V+ A+ S+D L I +LI Q+ +++
Sbjct: 175 LTVAGSKE-AINMVESGAKE--LSEDIMLEALLKGHQAIQELIIFQEQIVA 222
>gi|119489572|ref|ZP_01622332.1| polyribonucleotide nucleotidyltransferase [Lyngbya sp. PCC 8106]
gi|119454484|gb|EAW35632.1| polyribonucleotide nucleotidyltransferase [Lyngbya sp. PCC 8106]
Length = 719
Score = 140 bits (353), Expect = 1e-31, Method: Composition-based stats.
Identities = 48/243 (19%), Positives = 88/243 (36%), Gaps = 19/243 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSK-YAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTK 55
+R+ GR +Q+R +S GS L G T +L+ AT + + +
Sbjct: 323 IRVDGRNLDQVRPVSCRVGFLPKRVHGSGLFNRGLTQVLSIATLGTPGDAQDLDDLHPQD 382
Query: 56 HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115
Y P S G + R+ G RAL V+ + I +
Sbjct: 383 EKRYMHHYNFPPYSVGETKPMRSPGRREIGHGAL----AERALLPVLPVKEQFPYVIRVV 438
Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIV 175
+V+ ++G T ++ G+ ++L D + + + + +G +
Sbjct: 439 SEVLSSNGSTSMGSVCGSTLSLMDAGVPITKPVSGAAMGLIKEGEEV---------RILT 489
Query: 176 DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
D+ ED D+D TDSG I +Q + S D ++ AK +++
Sbjct: 490 DIQGIEDFLGDMDFKVAGTDSG-ITALQMDMKITGLSLDVIAKAIHQAKPARLHILESML 548
Query: 236 DVI 238
+ I
Sbjct: 549 EAI 551
Score = 97.2 bits (240), Expect = 2e-18, Method: Composition-based stats.
Identities = 52/237 (21%), Positives = 88/237 (37%), Gaps = 27/237 (11%)
Query: 10 QMREISLTRRV-SKYAEGSCLVKFGDTHLLTTAT---LEEKVPMWIRNTKHGWITAEYGM 65
R+I L + + A G+ L++ GDT +L TAT + + G
Sbjct: 11 DGRDIRLKIGLLAPQAGGAVLIESGDTSVLVTATRAEGRPGIDFLPLLVDYEERLYAGGR 70
Query: 66 LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125
+P R GR R R+I R LR ++ QI+ +
Sbjct: 71 IPGGFLRR------EGRPPDRVTLTSRLIDRPLRPLIPGWIRDDIQIVATTLSMDEQVPP 124
Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185
A+TGA VA+ +AA+ G+L I++ Y E
Sbjct: 125 DVLAVTGASVAVVMAQIPFYG-------------PMAAVRVGLLGDDFIINPTYREVRNG 171
Query: 186 DVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNEV 242
D+D + G +V V+ A + + ++ + + DLIK Q++ I+ E+
Sbjct: 172 DLDLVVAGSPEG-VVMVEAGANQ--LPEQDIIEAIDFGYEAVCDLIKAQQE-IAKEL 224
>gi|218437998|ref|YP_002376327.1| polynucleotide phosphorylase/polyadenylase [Cyanothece sp. PCC
7424]
gi|226702644|sp|B7KIQ3|PNP_CYAP7 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|218170726|gb|ACK69459.1| Polyribonucleotide nucleotidyltransferase [Cyanothece sp. PCC 7424]
Length = 718
Score = 140 bits (353), Expect = 1e-31, Method: Composition-based stats.
Identities = 49/244 (20%), Positives = 88/244 (36%), Gaps = 20/244 (8%)
Query: 1 MRLSGRQENQMREISLTRRVSK-YAEGSCLVKFGDTHLLTTATLE-----EKVPMWIRNT 54
+R+ GRQ +Q+R IS + GS L G T +L+ ATL +++ +
Sbjct: 323 VRVDGRQLDQVRPISCRVGLLPPRVHGSGLFCRGLTQVLSIATLGTPGDAQELADDLHPE 382
Query: 55 KHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIII 114
Y P S G + R+ G RA+ V+ + +
Sbjct: 383 DEKRYLHHYNFPPYSVGETRPMRSPGRREIGHGAL----AERAILPVLPTQQEFPYVVRV 438
Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPI 174
+V+ ++G T ++ G+ +AL D + + + + G +
Sbjct: 439 VSEVLSSNGSTSMGSVCGSTLALMDAGVPIIKPVSGAAMGLIKDGDEV---------RIL 489
Query: 175 VDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
D+ ED D+D TD+G I +Q + S D + A+ ++
Sbjct: 490 TDIQGIEDFLGDMDFKVAGTDNG-ITALQMDMKITGLSMDIVAKAIEQARPARLHILDKM 548
Query: 235 KDVI 238
VI
Sbjct: 549 LSVI 552
Score = 102 bits (254), Expect = 4e-20, Method: Composition-based stats.
Identities = 53/234 (22%), Positives = 90/234 (38%), Gaps = 26/234 (11%)
Query: 10 QMREISLTRRV-SKYAEGSCLVKFGDTHLLTTAT---LEEKVPMWIRNTKHGWITAEYGM 65
R+I L + + A GS L++ GDT +L TAT E V + G
Sbjct: 11 DGRDIRLKLGLLAPQAGGSVLIQSGDTAVLVTATKAASREGVDFLPLTVDYEERLYAAGR 70
Query: 66 LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125
+P R GR ++ I R+I R LR + Q+I + +
Sbjct: 71 IPGGFLRR------EGRPPEKAILISRLIDRPLRPLFPHWLRDDIQVIATTLSMDEEVPP 124
Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185
A+TGA +A+ +AA+ G++ I++ Y E +T
Sbjct: 125 DVLAVTGASLAVILAEIPFFG-------------PMAAVRVGLVGDDFIINPTYKEINTG 171
Query: 186 DVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
D+D + G +V V+ A + + ++ + + DLI Q+DV+
Sbjct: 172 DLDLVVAGSPDG-VVMVEAGANQ--LPEQDIIEAIDFGYEAVRDLIAAQQDVME 222
>gi|194398464|ref|YP_002037251.1| polynucleotide phosphorylase/polyadenylase [Streptococcus
pneumoniae G54]
gi|226702694|sp|B5E2A0|PNP_STRP4 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|257096717|sp|B2IMQ9|PNP_STRPS RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|194358131|gb|ACF56579.1| polyribonucleotide nucleotidyltransferase [Streptococcus pneumoniae
G54]
gi|301801461|emb|CBW34153.1| polyribonucleotide nucleotidyltransferase [Streptococcus pneumoniae
INV200]
Length = 737
Score = 140 bits (353), Expect = 1e-31, Method: Composition-based stats.
Identities = 42/244 (17%), Positives = 80/244 (32%), Gaps = 18/244 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56
+R GR+ +++R + GS L G T L+ T E ++ +
Sbjct: 317 VRPDGRKVDEIRPLDAVVDFLPRVHGSGLFTRGQTQALSVLTLAPMGETQIIDGLDPEYK 376
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y S G + A R+ G RAL V+ I +
Sbjct: 377 KRFMHHYNFPQYSVGETGRYGAPGRREIGHGALG----ERALAQVLPSLEEFPYAIRLVA 432
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V++++G + A+I +AL ++ + + + D
Sbjct: 433 EVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISD---------GNNYTVLTD 483
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T G I +Q + + + L AK +++ + +
Sbjct: 484 IQGLEDHFGDMDFKVAGTRDG-ITALQMDIKIQGITAEILTEALAQAKKARFEILDVIEA 542
Query: 237 VISN 240
I
Sbjct: 543 TIPE 546
Score = 112 bits (279), Expect = 5e-23, Method: Composition-based stats.
Identities = 42/232 (18%), Positives = 85/232 (36%), Gaps = 26/232 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKV---PMWIRNTKHGWITAEYGMLP 67
RE+ + V+K A GS +V++G++ +LT A + +K+ + + G P
Sbjct: 13 RELIVETGQVAKQANGSVVVRYGESTVLTAAVMSKKMATGDFFPLQVNYEEKMYAAGKFP 72
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R GR + R+I R +R + Q+I +
Sbjct: 73 GGFMKR------EGRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDENASAPM 126
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
AA+ G+ +A G +A + G + G I++ + +
Sbjct: 127 AAMFGSSLA-------------LSISDIPFDGPIAGVQVGYVDGQIIINPSQEQAEQSLL 173
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
+ T I V+ A+ S++ L + + +LI Q+++++
Sbjct: 174 ELTVAGTKH-AINMVESGAKE--LSEEIMLEALLKGHEAVKELIAFQEEIVA 222
>gi|320104995|ref|YP_004180586.1| polyribonucleotide nucleotidyltransferase [Isosphaera pallida ATCC
43644]
gi|319752277|gb|ADV64037.1| polyribonucleotide nucleotidyltransferase [Isosphaera pallida ATCC
43644]
Length = 766
Score = 140 bits (353), Expect = 1e-31, Method: Composition-based stats.
Identities = 47/244 (19%), Positives = 86/244 (35%), Gaps = 16/244 (6%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
+R GR +R IS + A GS L + G+T L T L +E+ I +
Sbjct: 330 LRSDGRGPKDLRPISCEVGLLPKAHGSALFQRGETQALVTTVLGTAADEQRIDGIMDEYT 389
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
+Y M + G R+ G R++ V+ A I +
Sbjct: 390 KKFMLDYNMPSFAVGEVRPIRGPGRREIGHGAL----AERSVAPVLPDPARFPYTIRVVS 445
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
D+++++G + A++ GA ++L D + D + V + D
Sbjct: 446 DILESNGSSSMASVCGATLSLMDAGVPISDPVGGISIGLVWDEPT-------DRFVLLTD 498
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T G + +Q + S L+ A + ++++
Sbjct: 499 IIGDEDHYGDMDFKVAGTQRG-VTGIQLDLKNLGISPRIVRETLDQALEARMEILRTMLR 557
Query: 237 VISN 240
I
Sbjct: 558 SIKR 561
Score = 92.6 bits (228), Expect = 4e-17, Method: Composition-based stats.
Identities = 42/227 (18%), Positives = 69/227 (30%), Gaps = 26/227 (11%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTAT---LEEKVPMWIRNTKHGWITAEYGMLPRS 69
+ L ++K A GS +V+ G T L E + + ++ G P
Sbjct: 27 LILETGKLAKQATGSVVVQVGGTMSLVAVVTAPGREGLDFFPLQVEYREKVYAAGKFPGG 86
Query: 70 TGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAA 129
R GR + R+I R +R + QI +
Sbjct: 87 FIKR------EGRPTTKDILTSRLIDRPIRPLFPEWYRDEVQIQASPISADRINDPDVLS 140
Query: 130 ITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDA 189
+ GA AL V +I G + G + E D+D
Sbjct: 141 MIGASAALCLTPAPFLG-------------PVGSIRVGRIDGRLVPLPTAEEMEQSDLDL 187
Query: 190 NFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
T S IV ++G + + F + A + +I LQ +
Sbjct: 188 VVASTTS-KIVMIEGFGQE--LPESEMFDAIMKAHEYNQAVIALQHE 231
>gi|172079486|ref|ZP_02707776.2| polyribonucleotide nucleotidyltransferase
(Polynucleotidephosphorylase) (PNPase) (Vegetative
protein 15) (VEG15) [Streptococcus pneumoniae
CDC1873-00]
gi|172043773|gb|EDT51819.1| polyribonucleotide nucleotidyltransferase
(Polynucleotidephosphorylase) (PNPase) (Vegetative
protein 15) (VEG15) [Streptococcus pneumoniae
CDC1873-00]
gi|301793785|emb|CBW36174.1| polyribonucleotide nucleotidyltransferase [Streptococcus pneumoniae
INV104]
gi|332203753|gb|EGJ17820.1| polyribonucleotide nucleotidyltransferase [Streptococcus pneumoniae
GA47368]
gi|332204610|gb|EGJ18675.1| polyribonucleotide nucleotidyltransferase [Streptococcus pneumoniae
GA47901]
Length = 737
Score = 140 bits (353), Expect = 1e-31, Method: Composition-based stats.
Identities = 42/244 (17%), Positives = 80/244 (32%), Gaps = 18/244 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56
+R GR+ +++R + GS L G T L+ T E ++ +
Sbjct: 317 VRPDGRKVDEIRPLDAVVDFLPRVHGSGLFTRGQTQALSVLTLAPMGETQIIDGLDPEYK 376
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y S G + A R+ G RAL V+ I +
Sbjct: 377 KRFMHHYNFPQYSVGETGRYGAPGRREIGHGALG----ERALAQVLPSLEEFPYAIRLVA 432
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V++++G + A+I +AL ++ + + + D
Sbjct: 433 EVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISD---------GNNYTVLTD 483
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T G I +Q + + + L AK +++ + +
Sbjct: 484 IQGLEDHFGDMDFKVAGTRDG-ITALQMDIKIQGITAEILTEALAQAKKARFEILDVIEA 542
Query: 237 VISN 240
I
Sbjct: 543 TIPE 546
Score = 112 bits (280), Expect = 4e-23, Method: Composition-based stats.
Identities = 41/232 (17%), Positives = 84/232 (36%), Gaps = 26/232 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKV---PMWIRNTKHGWITAEYGMLP 67
RE+ + V+K A GS +V++G++ +LT A + +K+ + + G P
Sbjct: 13 RELIVETGQVAKQANGSVVVRYGESTVLTAAVMSKKMATGDFFPLQVNYEEKMYAAGKFP 72
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R GR + R+I R +R + Q+I +
Sbjct: 73 GGFMKR------EGRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDENASAPM 126
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
AA+ G+ +A G +A + G + I++ + +
Sbjct: 127 AAMFGSSLA-------------LSISDIPFDGPIAGVQVGYVDDQIIINPSQEQAEQSLL 173
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
+ T I V+ A+ S++ L + + +LI Q+++++
Sbjct: 174 ELTVAGTKH-AINMVESGAKE--LSEEIMLEALLKGHEAVKELIAFQEEIVA 222
>gi|56808519|ref|ZP_00366256.1| COG1185: Polyribonucleotide nucleotidyltransferase (polynucleotide
phosphorylase) [Streptococcus pyogenes M49 591]
gi|209560089|ref|YP_002286561.1| polynucleotide phosphorylase/polyadenylase [Streptococcus pyogenes
NZ131]
gi|226704825|sp|B5XIK4|PNP_STRPZ RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|209541290|gb|ACI61866.1| Polyribonucleotide nucleotidyltransferase [Streptococcus pyogenes
NZ131]
Length = 710
Score = 140 bits (353), Expect = 1e-31, Method: Composition-based stats.
Identities = 43/244 (17%), Positives = 82/244 (33%), Gaps = 18/244 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56
+R GR+ +++R + GS L G T L+ T E ++ +
Sbjct: 317 IRPDGRKIDEIRPLDAVVDFLPKVHGSGLFTRGQTQALSVLTLAPMGETQIIDGLAPEYK 376
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y S G + A R+ G RAL V+ I +
Sbjct: 377 KRFLHHYNFPQYSVGETGRYGAAGRREIGHGALG----ERALEQVLPSLEEFPYAIRLVA 432
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V++++G + A+I +AL ++ + + + + D
Sbjct: 433 EVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISD---------GINYTVLTD 483
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T G I +Q + A + L AK +++ + +
Sbjct: 484 IQGLEDHFGDMDFKVAGTREG-ITALQMDIKIAGITPQILEEALAQAKKARFEILDVIEA 542
Query: 237 VISN 240
I+
Sbjct: 543 TIAE 546
Score = 103 bits (257), Expect = 2e-20, Method: Composition-based stats.
Identities = 42/231 (18%), Positives = 82/231 (35%), Gaps = 26/231 (11%)
Query: 13 EISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKV---PMWIRNTKHGWITAEYGMLPR 68
+ + V+K A G+ +V++GD+ +LT A + +K+ + + G P
Sbjct: 14 PLVVEVGQVAKQANGATVVRYGDSTVLTAAVMSKKMATGDFFPLQVNYEEKMYAAGKFPG 73
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
R GR + R+I R +R + Q+I + A
Sbjct: 74 GFMKR------EGRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDENASAPMA 127
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+ G+ +A G +A + G + G I++ D + ++
Sbjct: 128 AMFGSSLA-------------LSISDIPFNGPIAGVQVGYIDGEFIINPDKEQMEASLLE 174
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
+ I V+ A+ S+D L I +LI Q+ +++
Sbjct: 175 LTVAGSKE-AINMVESGAKE--LSEDIMLEALLKGHQAIQELIAFQEQIVA 222
>gi|260910888|ref|ZP_05917531.1| polyribonucleotide nucleotidyltransferase [Prevotella sp. oral
taxon 472 str. F0295]
gi|260634996|gb|EEX53043.1| polyribonucleotide nucleotidyltransferase [Prevotella sp. oral
taxon 472 str. F0295]
Length = 741
Score = 140 bits (353), Expect = 1e-31, Method: Composition-based stats.
Identities = 45/243 (18%), Positives = 86/243 (35%), Gaps = 18/243 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHG 57
RL GR+ +++R I GS + G+T L+T T L+EK+ + + +
Sbjct: 325 RLDGRKTDEIRPIWCEVNSLPMPHGSAIFTRGETQSLSTCTLGTKLDEKMVDDVLDKSYM 384
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P STG + V R+ G R L+ + + +
Sbjct: 385 RFLLHYNFPPFSTGEAKAQRGVGRREIGHGHL----AWRGLKGQIPADY--PYTVRVVSQ 438
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+++++G + A + +AL D ++ + + + G + D+
Sbjct: 439 ILESNGSSSMATVCAGTLALMDAGVPLKKPVSGIAMGLIKN-------PGEEKYAILSDI 491
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T G + Q + S + L AK ++ +
Sbjct: 492 LGDEDHLGDMDFKTTGTKDG-LTATQMDIKCDGLSFEILEKALMQAKAGREHILGKLTET 550
Query: 238 ISN 240
I+
Sbjct: 551 IAE 553
Score = 109 bits (272), Expect = 3e-22, Method: Composition-based stats.
Identities = 38/241 (15%), Positives = 77/241 (31%), Gaps = 26/241 (10%)
Query: 3 LSGRQENQMREISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
GR IS+ V+K A+GS +V+ G+T LL T +
Sbjct: 11 PDGRT------ISIETGKVAKQADGSAVVRMGNTVLLATVCAAKDAVPGTDFMPLQVDYR 64
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
E G+ G R++ R LR + + + +
Sbjct: 65 EQYSAAGRFP--GGFTKREGKPGDNEILTSRLVDRVLRPLFPSNYHAEVYVNVMLLSADG 122
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
A A A+ +++ + + G +V+ + +
Sbjct: 123 VDQPDALAGLAASSAMAC-------------SDIPFDFYISEVRVARVNGEYVVNPTFEQ 169
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
D+D T +I+ V+ E ++ L +A + I + +Q++ ++ E
Sbjct: 170 MKEADMDIMVGATKD-NIMMVE--GEMDEVTEQDLIQALKVAHEAIKPMCTMQEE-LAKE 225
Query: 242 V 242
+
Sbjct: 226 L 226
>gi|15675748|ref|NP_269922.1| polynucleotide phosphorylase/polyadenylase [Streptococcus pyogenes
M1 GAS]
gi|71911473|ref|YP_283023.1| polynucleotide phosphorylase/polyadenylase [Streptococcus pyogenes
MGAS5005]
gi|81533345|sp|Q99XZ5|PNP_STRP1 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|13622969|gb|AAK34643.1| putative polynucleotide phosphorylase, alpha chain [Streptococcus
pyogenes M1 GAS]
gi|71854255|gb|AAZ52278.1| polyribonucleotide nucleotidyltransferase [Streptococcus pyogenes
MGAS5005]
Length = 710
Score = 140 bits (353), Expect = 1e-31, Method: Composition-based stats.
Identities = 43/244 (17%), Positives = 81/244 (33%), Gaps = 18/244 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56
+R GR+ +++R + GS L G T L+ T E ++ +
Sbjct: 317 IRPDGRKIDEIRPLDAVVDFLPKVHGSGLFTRGQTQALSVLTLAPMGETQIIDGLAPEYK 376
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y S G + A R+ G RAL V+ I +
Sbjct: 377 KRFLHHYNFPQYSVGETGRYGAAGRREIGHGALG----ERALEQVLPSLEEFPYAIRLVA 432
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V++++G + A+I +AL ++ + + + D
Sbjct: 433 EVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISD---------GTNYTVLTD 483
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T G I +Q + A + L AK +++ + +
Sbjct: 484 IQGLEDHFGDMDFKVAGTREG-ITALQMDIKIAGITPQILEEALAQAKKARFEILDVIEA 542
Query: 237 VISN 240
I+
Sbjct: 543 TIAE 546
Score = 103 bits (257), Expect = 2e-20, Method: Composition-based stats.
Identities = 42/231 (18%), Positives = 82/231 (35%), Gaps = 26/231 (11%)
Query: 13 EISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKV---PMWIRNTKHGWITAEYGMLPR 68
+ + V+K A G+ +V++GD+ +LT A + +K+ + + G P
Sbjct: 14 PLVVEVGQVAKQANGATVVRYGDSTVLTAAVMSKKMATGDFFPLQVNYEEKMYAAGKFPG 73
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
R GR + R+I R +R + Q+I + A
Sbjct: 74 GFMKR------EGRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDENASAPMA 127
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+ G+ +A G +A + G + G I++ D + ++
Sbjct: 128 AMFGSSLA-------------LSISDIPFNGPIAGVQVGYIDGEFIINPDKEQMEASLLE 174
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
+ I V+ A+ S+D L I +LI Q+ +++
Sbjct: 175 LTVAGSKE-AINMVESGAKE--LSEDIMLEALLKGHQAIQELIAFQEQIVA 222
>gi|306826612|ref|ZP_07459917.1| polyribonucleotide nucleotidyltransferase [Streptococcus pyogenes
ATCC 10782]
gi|304431190|gb|EFM34194.1| polyribonucleotide nucleotidyltransferase [Streptococcus pyogenes
ATCC 10782]
Length = 710
Score = 140 bits (353), Expect = 1e-31, Method: Composition-based stats.
Identities = 43/244 (17%), Positives = 81/244 (33%), Gaps = 18/244 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56
+R GR+ +++R + GS L G T L+ T E ++ +
Sbjct: 317 IRPDGRKIDEIRPLDAVVDFLPKVHGSGLFTRGQTQALSVLTLAPMGETQIIDGLAPEYK 376
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y S G + A R+ G RAL V+ I +
Sbjct: 377 KRFLHHYNFPQYSVGETGRYGAAGRREIGHGALG----ERALEQVLPSLEEFPYAIRLVA 432
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V++++G + A+I +AL ++ + + + D
Sbjct: 433 EVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISD---------GTNYTVLTD 483
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T G I +Q + A + L AK +++ + +
Sbjct: 484 IQGLEDHFGDMDFKVAGTREG-ITALQMDIKIAGITPQILEEALAQAKKARFEILDVIEA 542
Query: 237 VISN 240
I+
Sbjct: 543 TIAE 546
Score = 103 bits (257), Expect = 2e-20, Method: Composition-based stats.
Identities = 41/231 (17%), Positives = 82/231 (35%), Gaps = 26/231 (11%)
Query: 13 EISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKV---PMWIRNTKHGWITAEYGMLPR 68
+ + V+K A G+ +V++G++ +LT A + +K+ + + G P
Sbjct: 14 PLVVEVGQVAKQANGATVVRYGESTVLTAAVMSKKMATGDFFPLQVNYEEKMYAAGKFPG 73
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
R GR + R+I R +R + Q+I + A
Sbjct: 74 GFMKR------EGRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDENASAPMA 127
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+ G+ +A G +A + G + G I++ D + ++
Sbjct: 128 AMFGSSLA-------------LSISDIPFNGPIAGVQVGYIDGEFIINPDKEQMEASLLE 174
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
+ I V+ A+ S+D L I +LI Q+ +++
Sbjct: 175 LTVAGSKE-AINMVESGAKE--LSEDIMLEALLKGHQAIQELIAFQEQIVA 222
>gi|218887594|ref|YP_002436915.1| polynucleotide phosphorylase/polyadenylase [Desulfovibrio vulgaris
str. 'Miyazaki F']
gi|226702648|sp|B8DN07|PNP_DESVM RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|218758548|gb|ACL09447.1| Polyribonucleotide nucleotidyltransferase [Desulfovibrio vulgaris
str. 'Miyazaki F']
Length = 756
Score = 140 bits (353), Expect = 1e-31, Method: Composition-based stats.
Identities = 43/242 (17%), Positives = 81/242 (33%), Gaps = 19/242 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +R I + + A GS L G+T L ATL + + +
Sbjct: 322 RIDGRDTKTVRPILIEAGLLPRAHGSALFSRGETKSLVVATLGSSTDSQRMDSLVGDVTK 381
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G R R + +AL+ V+ + + +
Sbjct: 382 KFMLHYNFPPYSVGEVKM-----SRVSRREIGHGALAEKALKPVLPQDDSFPFTLRVVAE 436
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
++++G + AA+ G ++L D + + + + + D+
Sbjct: 437 TMESNGSSSMAAVCGGSLSLMDAGVPVTAPVAGVAMGLIKE---------EGEYLVLTDI 487
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED+ D+D T G I VQ + D + A++ ++ V
Sbjct: 488 LGDEDALGDMDFKIAGTAEG-ITAVQMDIKITGLPTDVMARAMAQAREARLHILAEMAKV 546
Query: 238 IS 239
+
Sbjct: 547 LE 548
Score = 103 bits (257), Expect = 2e-20, Method: Composition-based stats.
Identities = 49/228 (21%), Positives = 77/228 (33%), Gaps = 25/228 (10%)
Query: 13 EISLTRR-VSKYAEGSCLVKFGDTHLLTTAT---LEEKVPMWIRNTKHGWITAEYGMLPR 68
EI L ++ A G+ V+ G T +L TA LE + + + G +P
Sbjct: 18 EIILETGRLANQAHGAVWVQCGGTVVLVTACTQPLERDMGFFPLTVDYSEKMYAAGRIPG 77
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
S R GR R + R+I R +R + QI+ + + +
Sbjct: 78 SFFRR-----EIGRPSERETLVSRLIDRPVRPLFTKGFRDEVQILANVISADQENDSDVL 132
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+TGA A +G VA G + G +++ E D+
Sbjct: 133 AVTGASAA-------------LSISPIPFEGPVAGARIGRVNGEFVLNPTMKEMEASDLA 179
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ +V V+ E +D A L A I LI Q
Sbjct: 180 IVIAASRD-SVVMVE--GEAHFVPEDVIVAALEWAHKEIQPLIDAQLK 224
>gi|256396976|ref|YP_003118540.1| polynucleotide phosphorylase/polyadenylase [Catenulispora
acidiphila DSM 44928]
gi|256363202|gb|ACU76699.1| guanosine pentaphosphate synthetase I/polyribonucleotide
nucleotidyltransferase [Catenulispora acidiphila DSM
44928]
Length = 737
Score = 140 bits (353), Expect = 1e-31, Method: Composition-based stats.
Identities = 46/242 (19%), Positives = 84/242 (34%), Gaps = 14/242 (5%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
+R+ GR +R +S V GS L + G+T +L TL E+ +
Sbjct: 338 VRIDGRGVRDIRPLSAEVEVVPRVHGSALFERGETQILGITTLNMLRMEQQLDTLNPETR 397
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P STG + + R+ G RAL V+ I
Sbjct: 398 KRYMHNYNFPPYSTGETGRVGSPKRREIGHGAL----AERALVPVLPTREEFPYAIRQVS 453
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+ + ++G T ++ + ++L + ++ + V +A G + D
Sbjct: 454 EALSSNGSTSMGSVCASTMSLLNAGVPLKAPVAGIAMGLV-----SAEIDGKTEYVALTD 508
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED+ D+D T + +Q + A L AKD ++ + +
Sbjct: 509 ILGAEDAFGDMDFKVAGTKEF-VTALQLDTKLDGIPASVLAAALKQAKDARLHILDVMME 567
Query: 237 VI 238
I
Sbjct: 568 AI 569
Score = 80.3 bits (196), Expect = 2e-13, Method: Composition-based stats.
Identities = 37/245 (15%), Positives = 67/245 (27%), Gaps = 39/245 (15%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGD-THLLTTATLEEKVPMWIRNT----KHGWITAEYGM 65
R + +++ A GS + + T +L+ T + + G
Sbjct: 20 RTVRFETGRLARQAAGSVVAYLDEETMVLSATTASKSPKDSLDFFPLTVDVEERMYAVGR 79
Query: 66 LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125
+P S R GR + R+I R LR Q++ + D
Sbjct: 80 IPGSFFRR------EGRPSEDAILTCRLIDRPLRPSFAKGLRNEVQVVATIMALNPDHLY 133
Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185
AI A + G + + ++ + + E +
Sbjct: 134 DVVAINAASASTQLAG-------------LPFSGPIGGVRVALIQDRWVAFPTHTELADA 180
Query: 186 DVDANFVMT----DSGHIVEVQGSAERATFS----------QDHFFAMLNLAKDRIADLI 231
D I+ V+ A T S ++ L AK I L
Sbjct: 181 VFDMVVAGRTLEDGDVAIMMVEAEATSQTVSLVAGGSTAPTEEVVADGLEAAKPFIKALC 240
Query: 232 KLQKD 236
Q++
Sbjct: 241 VAQQE 245
>gi|315226331|ref|ZP_07868119.1| polyribonucleotide nucleotidyltransferase [Parascardovia
denticolens DSM 10105]
gi|315120463|gb|EFT83595.1| polyribonucleotide nucleotidyltransferase [Parascardovia
denticolens DSM 10105]
Length = 966
Score = 140 bits (353), Expect = 1e-31, Method: Composition-based stats.
Identities = 47/241 (19%), Positives = 85/241 (35%), Gaps = 14/241 (5%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR + +R +S V GS L + G+T +L TL E+ +
Sbjct: 390 RIDGRGLSDIRTLSAEVDVVPRVHGSALFQRGETQILGVTTLNMLKMEQTTDALSGPDTK 449
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y M P STG + + R+ G RAL V+ I +
Sbjct: 450 RYMHNYEMPPYSTGETGRVGSPKRREIGHGAL----AERALIPVLPSREEFPYAIRQVSE 505
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
I ++G T ++ + ++L D ++ + V + G + + D+
Sbjct: 506 AIGSNGSTSMGSVCASTMSLLDAGVPLKAPVAGIAMGLV-----SGEVDGQMVYKTLTDI 560
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED+ D+D T I +Q + D L A + ++++ +
Sbjct: 561 LGAEDAFGDMDFKVAGTSEF-ITALQLDTKLDGIPADILAGALQQAYEARTTILEVIDEC 619
Query: 238 I 238
I
Sbjct: 620 I 620
>gi|291544643|emb|CBL17752.1| polyribonucleotide nucleotidyltransferase [Ruminococcus sp. 18P13]
Length = 706
Score = 140 bits (353), Expect = 1e-31, Method: Composition-based stats.
Identities = 46/242 (19%), Positives = 80/242 (33%), Gaps = 17/242 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +++R ++ V GS L G T +LT ATL + + I
Sbjct: 314 RVDGRGIDEIRPLAAEVGVLPRVHGSGLFTRGQTQVLTVATLGPVSDAQRIDGIDEDVSK 373
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y S G R+ G RAL V+ + + +
Sbjct: 374 RYMHHYNFPSYSVGETKPSRGPGRREIGHGAL----AERALEPVIPPVEEFPYALRLVSE 429
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
V+ ++G T +I G+ +AL D ++ + K +VD+
Sbjct: 430 VLSSNGSTSQGSICGSTLALMDAGVPIKAPVAGISCGLITKPD-------SDEFMTMVDI 482
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI-KLQKD 236
ED D+D T G I +Q + + L + ++ ++
Sbjct: 483 QGLEDFFGDMDFKVGGTHKG-ITAIQVDIKVDGLTPAIIEEALEKTRKARIYILDEIMLK 541
Query: 237 VI 238
I
Sbjct: 542 AI 543
Score = 90.7 bits (223), Expect = 2e-16, Method: Composition-based stats.
Identities = 33/231 (14%), Positives = 79/231 (34%), Gaps = 27/231 (11%)
Query: 12 REISLTRRVS-KYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKHGWITAEYGML 66
RE+++ + + A GSC V++G + ++ T E + + + + G +
Sbjct: 15 RELTVETGKTCELANGSCWVRYGGSVVMANVTASAKPREGIDFFPLSVDYEERLYAVGKI 74
Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
P S R G+ ++ RM+ R +R + +++ + D
Sbjct: 75 PGSFMKR------EGKPSEKAILTSRMVDRPIRPLFPKDMRNDVSVVMTVLAVDPDHSPE 128
Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
+ +A G +A +S G++ G +++ + D
Sbjct: 129 IMGMIATSIA-------------ISISDIPWNGPIAGVSVGLVDGEIVLNPTLEQRGRND 175
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
++ T IV ++ A + + + + ++ KD+
Sbjct: 176 LNLTVAGT-DKKIVMIEAGANQ--VDEATMMQAILAGQAENEKMVAFIKDI 223
>gi|300858688|ref|YP_003783671.1| polyribonucleotide nucleotidyltransferase [Corynebacterium
pseudotuberculosis FRC41]
gi|300686142|gb|ADK29064.1| polyribonucleotide nucleotidyltransferase [Corynebacterium
pseudotuberculosis FRC41]
Length = 767
Score = 140 bits (353), Expect = 1e-31, Method: Composition-based stats.
Identities = 43/244 (17%), Positives = 88/244 (36%), Gaps = 14/244 (5%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKH 56
R+ GR +R++ + + A GS L + G+T +L TL+ E+ + T
Sbjct: 382 FRIDGRGVTDIRDLGVEVELIPRAHGSALFERGETQILGVTTLDMLKMEQQIDSLSPTSS 441
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P STG + + R+ G RAL V+ I
Sbjct: 442 KRYIHHYNFPPYSTGETGRVGSPKRREIGHGAL----AERALIPVIPSREEFPYTIRQVS 497
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+ + ++G T ++ + ++L++ ++ + V G + D
Sbjct: 498 EALGSNGSTSMGSVCASTLSLYNAGVPLKAPVAGIAMGLVSDEID-----GETRYVALTD 552
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED+ D+D T + +Q + + + L A + +++ +
Sbjct: 553 ILGAEDAFGDMDFKVAGTRDF-VTALQLDTKLDGIPSEVLASALAQAYEAREAILETMAE 611
Query: 237 VISN 240
VI +
Sbjct: 612 VIES 615
Score = 79.5 bits (194), Expect = 3e-13, Method: Composition-based stats.
Identities = 39/253 (15%), Positives = 70/253 (27%), Gaps = 33/253 (13%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGD-THLLTTATLEEKV----PMWIRNTKHGWITAEYGM 65
R I ++K A+GS D T LL T T ++ + G
Sbjct: 46 RTIRFETGQLAKQADGSVTTYLDDGTMLLATTTASKQPREGFDFFPLTVDVEERMYAAGR 105
Query: 66 LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125
+P S R GR + R+I R LR Q++I + +
Sbjct: 106 IPGSFFRR------EGRPSTEAILACRLIDRPLRPTFVKGLRNEVQVVITVLSMDPEDYY 159
Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY-------PIVDLD 178
AI GA A + +++ + + + +
Sbjct: 160 DVVAINGASAATQLSGLPVSGPVGGVRMALIADEEHPKGQWIAFPTHEQHEKALFELVVA 219
Query: 179 YGEDSTIDVDANFVMTDSGHIVEVQGSAERATF----------SQDHFFAMLNLAKDRIA 228
+ + I+ V+ A +++ L AK I
Sbjct: 220 GRLVAKKQGHKTV---EDVAIMMVEAGATENVVEKIKDGAPAPTEEIVAQGLEAAKPFIE 276
Query: 229 DLIKLQKDVISNE 241
L + Q ++
Sbjct: 277 VLCRAQ-AGLAEH 288
>gi|290968451|ref|ZP_06559990.1| polyribonucleotide nucleotidyltransferase [Megasphaera genomosp.
type_1 str. 28L]
gi|290781447|gb|EFD94036.1| polyribonucleotide nucleotidyltransferase [Megasphaera genomosp.
type_1 str. 28L]
Length = 716
Score = 140 bits (353), Expect = 1e-31, Method: Composition-based stats.
Identities = 45/243 (18%), Positives = 86/243 (35%), Gaps = 18/243 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
+R GR+ +++R +S + G+ L G T +L+ ATL E + +
Sbjct: 312 IRPDGRKVDEVRPVSCEVGLFARTHGTGLFTRGQTQILSFATLAPLSEAQHIDGVGLETD 371
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y S G R+ G + RAL V+ I +
Sbjct: 372 RRYMHHYNFPSFSVGETRSSRGPGRREIGHGKL----AERALVQVLPSEEEFPYAIRVVS 427
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V++++G + ++ G+ +AL D ++ + V KG + D
Sbjct: 428 EVLESNGSSSMGSVCGSTLALMDAGVPLQAPVAGVAMGLVTKGED---------FTILTD 478
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED+ D+D T G + +Q + ++ L A + ++
Sbjct: 479 IQGMEDALGDMDFKVAGTTKG-VTAIQMDIKIKGLRREILEQALQQAHEGRLHIMGKMLT 537
Query: 237 VIS 239
IS
Sbjct: 538 AIS 540
Score = 101 bits (250), Expect = 1e-19, Method: Composition-based stats.
Identities = 43/232 (18%), Positives = 84/232 (36%), Gaps = 27/232 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKHGWITAEYGML 66
R +++ ++K A G+ LV++GDT + TAT E + + G +
Sbjct: 13 RTLTVEVGKLAKQASGAALVRYGDTAVFVTATGAKEAREDADFFPLTVDYEEKMYSVGKI 72
Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
P R G+ + R+I R +R + + ++ + D
Sbjct: 73 PGGFIKR------EGKPPESATLFARLIDRPIRPLFPKTYRHEVHVVAYDFCVDHDNAPE 126
Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
AA+ GA V+L G +A + G + G +++ + D
Sbjct: 127 IAAMIGASVSLCM-------------SHIPFAGPIAGVRVGRVDGQFVINPTVVQSEKSD 173
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
+D T I+ V+G AE+ + + +A + I + Q+ +
Sbjct: 174 MDFVVAGTKD-AILMVEGGAEQVP--EADILDAIMVAHEEIKKAVAFQESFL 222
>gi|215404753|ref|ZP_03416934.1| polynucleotide phosphorylase/polyadenylase [Mycobacterium
tuberculosis 02_1987]
gi|218754524|ref|ZP_03533320.1| polynucleotide phosphorylase/polyadenylase [Mycobacterium
tuberculosis GM 1503]
gi|260201911|ref|ZP_05769402.1| polynucleotide phosphorylase/polyadenylase [Mycobacterium
tuberculosis T46]
gi|308380469|ref|ZP_07669200.1| bifunctional polyribonucleotide nucleotidyltransferase gpsI
[Mycobacterium tuberculosis SUMu011]
gi|308361392|gb|EFP50243.1| bifunctional polyribonucleotide nucleotidyltransferase gpsI
[Mycobacterium tuberculosis SUMu011]
Length = 743
Score = 140 bits (353), Expect = 1e-31, Method: Composition-based stats.
Identities = 44/245 (17%), Positives = 82/245 (33%), Gaps = 12/245 (4%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKH 56
R+ GR +R +S V A GS L + G+T +L TL+ + +
Sbjct: 336 FRIDGRGITDIRALSAEVAVVPRAHGSALFERGETQILGVTTLDMIKMAQQIDSLGPETS 395
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P STG + + R+ G RAL V+ I
Sbjct: 396 KRYMHHYNFPPFSTGETGRVGSPKRREIGHGAL----AERALVPVLPSVEEFPYAIRQVS 451
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCG---MLCGYP 173
+ + ++G T ++ + +AL + ++ + V +
Sbjct: 452 EALGSNGSTSMGSVCASTLALLNAGVPLKAPVAGIAMGLVSDDIQVEGAVDGVVERRFVT 511
Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
+ D+ ED+ D+D T + +Q + L AKD ++++
Sbjct: 512 LTDILGAEDAFGDMDFKVAGTKDF-VTALQLDTKLDGIPSQVLAGALEQAKDARLTILEV 570
Query: 234 QKDVI 238
+ I
Sbjct: 571 MAEAI 575
>gi|75763848|ref|ZP_00743497.1| Polyribonucleotide nucleotidyltransferase [Bacillus thuringiensis
serovar israelensis ATCC 35646]
gi|74488666|gb|EAO52233.1| Polyribonucleotide nucleotidyltransferase [Bacillus thuringiensis
serovar israelensis ATCC 35646]
Length = 525
Score = 140 bits (353), Expect = 1e-31, Method: Composition-based stats.
Identities = 44/244 (18%), Positives = 85/244 (34%), Gaps = 18/244 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHL--LTT--ATLEEKVPMWIRNTKH 56
+R GR+ +++R ++ + GS L G T + T A + ++ + +
Sbjct: 128 IRPDGRKGDEIRPLASEVGILSRTHGSGLFTRGQTQAXSICTLGALGDVQILDGLGVEES 187
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y S G R+ G RAL V+ + +
Sbjct: 188 KRFMHHYNFPSFSVGETRPMRGPGRREIGHGALG----ERALEPVIPSEKDFPYTVRLVS 243
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V++++G T A+I G+ +A+ D ++ + V G + D
Sbjct: 244 EVLESNGSTSQASICGSTLAMMDAGVPLKAPVAGIAMGLVKSGE---------HYTILSD 294
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T G + +Q + S++ L AK ++
Sbjct: 295 IQGMEDHLGDMDFKVAGTAQG-VTALQMDIKIDGLSREILEEALQQAKIGRVHILNHMLS 353
Query: 237 VISN 240
VI+
Sbjct: 354 VIAE 357
Score = 37.9 bits (86), Expect = 1.1, Method: Composition-based stats.
Identities = 7/38 (18%), Positives = 17/38 (44%), Gaps = 2/38 (5%)
Query: 201 EVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
V+ A++ ++ + D I LI Q++++
Sbjct: 1 MVEAGADQVP--EETMLEAIMFGHDEIKRLIAFQEEIV 36
>gi|294495471|ref|YP_003541964.1| ribosomal RNA-processing protein RRP41/SKI6 [Methanohalophilus
mahii DSM 5219]
gi|292666470|gb|ADE36319.1| ribosomal RNA-processing protein RRP41/SKI6 [Methanohalophilus
mahii DSM 5219]
Length = 297
Score = 140 bits (353), Expect = 1e-31, Method: Composition-based stats.
Identities = 61/239 (25%), Positives = 106/239 (44%), Gaps = 22/239 (9%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEK-VPMWIRNTKHGWI 59
+RL GR+ +++R + + V A+GSC +++G+ +L + P ++ +
Sbjct: 14 LRLDGRRVDEIRPMKVEMGVLSRADGSCYLEWGNNKVLAAVYGPRELHPRRMQKPNEVLV 73
Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119
+Y M S +R++ RS EI ++ G A VV I + +V+
Sbjct: 74 RYKYNMASFSVEDRIRPG-----PSRRSTEISKVSGEAFEPVVMTQYYPGAVIDVFAEVL 128
Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179
QAD GTRTAAI A +AL D +KG V+A + G + G ++DL+
Sbjct: 129 QADAGTRTAAINAATLALADAGI-------------PMKGLVSACAVGKVDGQLVLDLNK 175
Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
ED+ D MT G I +Q + + L + K +I++Q++ +
Sbjct: 176 PEDNYGQADLPVAMTQDGEITLLQMDGH---LTPEELEEGLEMVKKGCQQIIEIQREAL 231
>gi|19746859|ref|NP_607995.1| polynucleotide phosphorylase/polyadenylase [Streptococcus pyogenes
MGAS8232]
gi|81632438|sp|Q8NZC6|PNP_STRP8 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|19749100|gb|AAL98494.1| putative polynucleotide phosphorylase, alpha chain [Streptococcus
pyogenes MGAS8232]
Length = 710
Score = 140 bits (353), Expect = 1e-31, Method: Composition-based stats.
Identities = 43/244 (17%), Positives = 81/244 (33%), Gaps = 18/244 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56
+R GR+ +++R + GS L G T L+ T E ++ +
Sbjct: 317 IRPDGRKIDEIRPLDAVVDFLPKVHGSGLFTRGQTQALSVLTLAPMGETQIIDGLAPEYK 376
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y S G + A R+ G RAL V+ I +
Sbjct: 377 KSFLHHYNFPQYSVGETGRYGAAGRREIGHGALG----ERALEQVLPSLEEFPYAIRLVA 432
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V++++G + A+I +AL ++ + + + D
Sbjct: 433 EVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISD---------GTNYTVLTD 483
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T G I +Q + A + L AK +++ + +
Sbjct: 484 IQGLEDHFGDMDFKVAGTREG-ITALQMDIKIAGITPQILEEALAQAKKARFEILDVIEA 542
Query: 237 VISN 240
I+
Sbjct: 543 TIAE 546
Score = 104 bits (258), Expect = 2e-20, Method: Composition-based stats.
Identities = 41/231 (17%), Positives = 82/231 (35%), Gaps = 26/231 (11%)
Query: 13 EISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKV---PMWIRNTKHGWITAEYGMLPR 68
+ + V+K A G+ +V++G++ +LT A + +K+ + + G P
Sbjct: 14 PLVVEVGQVAKQANGATVVRYGESTVLTAAVMSKKMATGDFFPLQVNYEEKMYAAGKFPG 73
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
R GR + R+I R +R + Q+I + A
Sbjct: 74 GFMKR------EGRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDENASAPMA 127
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+ G+ +A G +A + G + G I++ D + ++
Sbjct: 128 AMFGSSLA-------------LSISDIPFNGPIAGVQVGYIDGEFIINPDKEQMEASLLE 174
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
+ I V+ A+ S+D L I +LI Q+ +++
Sbjct: 175 LTVAGSKE-AINMVESGAKE--LSEDIMLEALLKGHQAIQELIAFQEQIVA 222
>gi|308276640|gb|ADO26539.1| Polynucleotide phosphorylase/polyadenylase [Corynebacterium
pseudotuberculosis I19]
Length = 767
Score = 140 bits (353), Expect = 1e-31, Method: Composition-based stats.
Identities = 43/244 (17%), Positives = 88/244 (36%), Gaps = 14/244 (5%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKH 56
R+ GR +R++ + + A GS L + G+T +L TL+ E+ + T
Sbjct: 382 FRIDGRGVTDIRDLGVEVELIPRAHGSALFERGETQILGVTTLDMLKMEQQIDSLSPTSS 441
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P STG + + R+ G RAL V+ I
Sbjct: 442 KRYIHHYNFPPYSTGETGRVGSPKRREIGHGAL----AERALIPVIPSREEFPYTIRQVS 497
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+ + ++G T ++ + ++L++ ++ + V G + D
Sbjct: 498 EALGSNGSTSMGSVCASTLSLYNAGVPLKAPVAGIAMGLVSDEID-----GETRYVALTD 552
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED+ D+D T + +Q + + + L A + +++ +
Sbjct: 553 ILGAEDAFGDMDFKVAGTRDF-VTALQLDTKLDGIPSEVLASALAQAYEAREAILETMAE 611
Query: 237 VISN 240
VI +
Sbjct: 612 VIES 615
Score = 79.5 bits (194), Expect = 3e-13, Method: Composition-based stats.
Identities = 39/253 (15%), Positives = 70/253 (27%), Gaps = 33/253 (13%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGD-THLLTTATLEEKV----PMWIRNTKHGWITAEYGM 65
R I ++K A+GS D T LL T T ++ + G
Sbjct: 46 RTIRFETGQLAKQADGSVTTYLDDGTMLLATTTASKQPREGFDFFPLTVDVEERMYAAGR 105
Query: 66 LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125
+P S R GR + R+I R LR Q++I + +
Sbjct: 106 IPGSFFRR------EGRPSTEAILACRLIDRPLRPTFVKGLRNEVQVVITVLSMDPEDYY 159
Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY-------PIVDLD 178
AI GA A + +++ + + + +
Sbjct: 160 DVVAINGASAATQLSGLPVSGPVGGVRMALIADEEHPKGQWIAFPTHEQHEKALFELVVA 219
Query: 179 YGEDSTIDVDANFVMTDSGHIVEVQGSAERATF----------SQDHFFAMLNLAKDRIA 228
+ + I+ V+ A +++ L AK I
Sbjct: 220 GRLVAKKQGHKTV---EDVAIMMVEAGATENVVEKIKDGAPAPTEEIVAQGLEAAKPFIE 276
Query: 229 DLIKLQKDVISNE 241
L + Q ++
Sbjct: 277 VLCRAQ-AGLAEH 288
>gi|302206397|gb|ADL10739.1| Polynucleotide phosphorylase/polyadenylase [Corynebacterium
pseudotuberculosis C231]
gi|302330953|gb|ADL21147.1| Polyribonucleotide nucleotidyltransferase [Corynebacterium
pseudotuberculosis 1002]
Length = 767
Score = 140 bits (353), Expect = 2e-31, Method: Composition-based stats.
Identities = 43/244 (17%), Positives = 88/244 (36%), Gaps = 14/244 (5%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKH 56
R+ GR +R++ + + A GS L + G+T +L TL+ E+ + T
Sbjct: 382 FRIDGRGVTDIRDLGVEVELIPRAHGSALFERGETQILGVTTLDMLKMEQQIDSLSPTSS 441
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P STG + + R+ G RAL V+ I
Sbjct: 442 KRYIHHYNFPPYSTGETGRVGSPKRREIGHGAL----AERALIPVIPSREEFPYTIRQVS 497
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+ + ++G T ++ + ++L++ ++ + V G + D
Sbjct: 498 EALGSNGSTSMGSVCASTLSLYNAGVPLKAPVAGIAMGLVSDEID-----GETRYVALTD 552
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED+ D+D T + +Q + + + L A + +++ +
Sbjct: 553 ILGAEDAFGDMDFKVAGTRDF-VTALQLDTKLDGIPSEVLASALAQAYEAREAILETMAE 611
Query: 237 VISN 240
VI +
Sbjct: 612 VIES 615
Score = 79.5 bits (194), Expect = 4e-13, Method: Composition-based stats.
Identities = 39/253 (15%), Positives = 70/253 (27%), Gaps = 33/253 (13%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGD-THLLTTATLEEKV----PMWIRNTKHGWITAEYGM 65
R I ++K A+GS D T LL T T ++ + G
Sbjct: 46 RTIRFETGQLAKQADGSVTTYLDDGTMLLATTTASKQPREGFDFFPLTVDVEERMYAAGR 105
Query: 66 LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125
+P S R GR + R+I R LR Q++I + +
Sbjct: 106 IPGSFFRR------EGRPSTEAILACRLIDRPLRPTFVKGLRNEVQVVITVLSMDPEDYY 159
Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY-------PIVDLD 178
AI GA A + +++ + + + +
Sbjct: 160 DVVAINGASAATQLSGLPVSGPVGGVRMALIADEEHPKGQWIAFPTHEQHEKALFELVVA 219
Query: 179 YGEDSTIDVDANFVMTDSGHIVEVQGSAERATF----------SQDHFFAMLNLAKDRIA 228
+ + I+ V+ A +++ L AK I
Sbjct: 220 GRLVAKKQGHKTV---EDVAIMMVEAGATENVVEKIKDGAPAPTEEIVAQGLEAAKPFIE 276
Query: 229 DLIKLQKDVISNE 241
L + Q ++
Sbjct: 277 VLCRAQ-AGLAEH 288
>gi|260206095|ref|ZP_05773586.1| polynucleotide phosphorylase/polyadenylase [Mycobacterium
tuberculosis K85]
gi|289575481|ref|ZP_06455708.1| bifunctional polyribonucleotide nucleotidyltransferase gpsI
[Mycobacterium tuberculosis K85]
gi|289539912|gb|EFD44490.1| bifunctional polyribonucleotide nucleotidyltransferase gpsI
[Mycobacterium tuberculosis K85]
Length = 752
Score = 140 bits (353), Expect = 2e-31, Method: Composition-based stats.
Identities = 44/245 (17%), Positives = 82/245 (33%), Gaps = 12/245 (4%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKH 56
R+ GR +R +S V A GS L + G+T +L TL+ + +
Sbjct: 345 FRIDGRGITDIRALSAEVAVVPRAHGSALFERGETQILGVTTLDMIKMAQQIDSLGPETS 404
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P STG + + R+ G RAL V+ I
Sbjct: 405 KRYMHHYNFPPFSTGETGRVGSPKRREIGHGAL----AERALVPVLPSVEEFPYAIRQVS 460
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCG---MLCGYP 173
+ + ++G T ++ + +AL + ++ + V +
Sbjct: 461 EALGSNGSTSMGSVCASTLALLNAGVPLKAPVAGIAMGLVSDDIQVEGAVDGVVERRFVT 520
Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
+ D+ ED+ D+D T + +Q + L AKD ++++
Sbjct: 521 LTDILGAEDAFGDMDFKVAGTKDF-VTALQLDTKLDGIPSQVLAGALEQAKDARLTILEV 579
Query: 234 QKDVI 238
+ I
Sbjct: 580 MAEAI 584
>gi|15609920|ref|NP_217299.1| polynucleotide phosphorylase/polyadenylase [Mycobacterium
tuberculosis H37Rv]
gi|15842321|ref|NP_337358.1| polynucleotide phosphorylase/polyadenylase [Mycobacterium
tuberculosis CDC1551]
gi|31793959|ref|NP_856452.1| polynucleotide phosphorylase/polyadenylase [Mycobacterium bovis
AF2122/97]
gi|121638663|ref|YP_978887.1| polynucleotide phosphorylase/polyadenylase [Mycobacterium bovis BCG
str. Pasteur 1173P2]
gi|148662625|ref|YP_001284148.1| polynucleotide phosphorylase/polyadenylase [Mycobacterium
tuberculosis H37Ra]
gi|148823971|ref|YP_001288725.1| polynucleotide phosphorylase/polyadenylase [Mycobacterium
tuberculosis F11]
gi|167968613|ref|ZP_02550890.1| polynucleotide phosphorylase/polyadenylase [Mycobacterium
tuberculosis H37Ra]
gi|215412596|ref|ZP_03421324.1| polynucleotide phosphorylase/polyadenylase [Mycobacterium
tuberculosis 94_M4241A]
gi|215428215|ref|ZP_03426134.1| polynucleotide phosphorylase/polyadenylase [Mycobacterium
tuberculosis T92]
gi|215447035|ref|ZP_03433787.1| polynucleotide phosphorylase/polyadenylase [Mycobacterium
tuberculosis T85]
gi|219558792|ref|ZP_03537868.1| polynucleotide phosphorylase/polyadenylase [Mycobacterium
tuberculosis T17]
gi|224991155|ref|YP_002645844.1| polyribonucleotide phosphorylase/polyadenylase [Mycobacterium bovis
BCG str. Tokyo 172]
gi|253798133|ref|YP_003031134.1| bifunctional polyribonucleotide nucleotidyltransferase gpsI
[Mycobacterium tuberculosis KZN 1435]
gi|254232881|ref|ZP_04926208.1| bifunctional protein polyribonucleotide nucleotidyltransferase gpsI
: guanosine pentaphosphate synthetase +
polyribonucleotide nucleotidyltransferase [Mycobacterium
tuberculosis C]
gi|254365434|ref|ZP_04981479.1| bifunctional protein polyribonucleotide nucleotidyltransferase gpsI
: guanosine pentaphosphate synthetase +
polyribonucleotide nucleotidyltransferase [Mycobacterium
tuberculosis str. Haarlem]
gi|254551842|ref|ZP_05142289.1| polynucleotide phosphorylase/polyadenylase [Mycobacterium
tuberculosis '98-R604 INH-RIF-EM']
gi|260187800|ref|ZP_05765274.1| polynucleotide phosphorylase/polyadenylase [Mycobacterium
tuberculosis CPHL_A]
gi|289444328|ref|ZP_06434072.1| polyribonucleotide nucleotidyltransferase [Mycobacterium
tuberculosis T46]
gi|289448441|ref|ZP_06438185.1| bifunctional polyribonucleotide nucleotidyltransferase gpsI
[Mycobacterium tuberculosis CPHL_A]
gi|289553430|ref|ZP_06442640.1| bifunctional polyribonucleotide nucleotidyltransferase gpsI
[Mycobacterium tuberculosis KZN 605]
gi|289570962|ref|ZP_06451189.1| bifunctional polyribonucleotide nucleotidyltransferase gpsI
[Mycobacterium tuberculosis T17]
gi|289746586|ref|ZP_06505964.1| polyribonucleotide nucleotidyltransferase [Mycobacterium
tuberculosis 02_1987]
gi|289751440|ref|ZP_06510818.1| bifunctional polyribonucleotide nucleotidyltransferase gpsI
[Mycobacterium tuberculosis T92]
gi|289758910|ref|ZP_06518288.1| polyribonucleotide nucleotidyltransferase [Mycobacterium
tuberculosis T85]
gi|289762955|ref|ZP_06522333.1| guanosine pentaphosphate synthetase + polyribonucleotide
nucleotidyltransferase [Mycobacterium tuberculosis GM
1503]
gi|294994124|ref|ZP_06799815.1| polynucleotide phosphorylase/polyadenylase [Mycobacterium
tuberculosis 210]
gi|297635394|ref|ZP_06953174.1| polynucleotide phosphorylase/polyadenylase [Mycobacterium
tuberculosis KZN 4207]
gi|297732392|ref|ZP_06961510.1| polynucleotide phosphorylase/polyadenylase [Mycobacterium
tuberculosis KZN R506]
gi|298526249|ref|ZP_07013658.1| guanosine pentaphosphate synthetase/polyribonucleotide
nucleotidyltransferase [Mycobacterium tuberculosis
94_M4241A]
gi|306780966|ref|ZP_07419303.1| bifunctional polyribonucleotide nucleotidyltransferase gpsI
[Mycobacterium tuberculosis SUMu002]
gi|306785594|ref|ZP_07423916.1| bifunctional polyribonucleotide nucleotidyltransferase gpsI
[Mycobacterium tuberculosis SUMu003]
gi|306790189|ref|ZP_07428511.1| bifunctional polyribonucleotide nucleotidyltransferase gpsI
[Mycobacterium tuberculosis SUMu004]
gi|306794273|ref|ZP_07432575.1| bifunctional polyribonucleotide nucleotidyltransferase gpsI
[Mycobacterium tuberculosis SUMu005]
gi|306798691|ref|ZP_07436993.1| bifunctional polyribonucleotide nucleotidyltransferase gpsI
[Mycobacterium tuberculosis SUMu006]
gi|306804546|ref|ZP_07441214.1| bifunctional polyribonucleotide nucleotidyltransferase gpsI
[Mycobacterium tuberculosis SUMu008]
gi|306807414|ref|ZP_07444082.1| bifunctional polyribonucleotide nucleotidyltransferase gpsI
[Mycobacterium tuberculosis SUMu007]
gi|307085479|ref|ZP_07494592.1| bifunctional polyribonucleotide nucleotidyltransferase gpsI
[Mycobacterium tuberculosis SUMu012]
gi|308378098|ref|ZP_07668668.1| bifunctional polyribonucleotide nucleotidyltransferase gpsI
[Mycobacterium tuberculosis SUMu009]
gi|313659724|ref|ZP_07816604.1| polynucleotide phosphorylase/polyadenylase [Mycobacterium
tuberculosis KZN V2475]
gi|81421764|sp|Q7TXW0|PNP_MYCBO RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|81669114|sp|O33325|PNP_MYCTU RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|187610286|sp|A1KMC6|PNP_MYCBP RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|187610290|sp|A5U6D6|PNP_MYCTA RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|254782730|sp|C1AFP7|PNP_MYCBT RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|2624305|emb|CAA15578.1| BIFUNCTIONAL PROTEIN POLYRIBONUCLEOTIDE NUCLEOTIDYLTRANSFERASE
GPSI: GUANOSINE PENTAPHOSPHATE SYNTHETASE +
POLYRIBONUCLEOTIDE NUCLEOTIDYLTRANSFERASE
(POLYNUCLEOTIDE PHOSPHORYLASE) (PNPASE) [Mycobacterium
tuberculosis H37Rv]
gi|13882616|gb|AAK47172.1| guanosine pentaphosphate synthetase/polyribonucleotide
nucleotidyltransferase [Mycobacterium tuberculosis
CDC1551]
gi|31619553|emb|CAD94991.1| BIFUNCTIONAL PROTEIN POLYRIBONUCLEOTIDE NUCLEOTIDYLTRANSFERASE
GPSI: GUANOSINE PENTAPHOSPHATE SYNTHETASE +
POLYRIBONUCLEOTIDE NUCLEOTIDYLTRANSFERASE
(POLYNUCLEOTIDE PHOSPHORYLASE) (PNPASE) [Mycobacterium
bovis AF2122/97]
gi|121494311|emb|CAL72789.1| Bifunctional protein polyribonucleotide nucleotidyltransferase
gpsI: guanosine pentaphosphate synthetase +
polyribonucleotide nucleotidyltransferase [Mycobacterium
bovis BCG str. Pasteur 1173P2]
gi|124601940|gb|EAY60950.1| bifunctional protein polyribonucleotide nucleotidyltransferase gpsI
: guanosine pentaphosphate synthetase +
polyribonucleotide nucleotidyltransferase [Mycobacterium
tuberculosis C]
gi|134150947|gb|EBA42992.1| bifunctional protein polyribonucleotide nucleotidyltransferase gpsI
: guanosine pentaphosphate synthetase +
polyribonucleotide nucleotidyltransferase [Mycobacterium
tuberculosis str. Haarlem]
gi|148506777|gb|ABQ74586.1| guanosine pentaphosphate synthetase/polyribonucleotide
nucleotidyltransferase [Mycobacterium tuberculosis
H37Ra]
gi|148722498|gb|ABR07123.1| bifunctional protein polyribonucleotide nucleotidyltransferase
gpsI: guanosine pentaphosphate synthetase +
polyribonucleotide nucleotidyltransferase [Mycobacterium
tuberculosis F11]
gi|224774270|dbj|BAH27076.1| polyribonucleotide phosphorylase/polyadenylase [Mycobacterium bovis
BCG str. Tokyo 172]
gi|253319636|gb|ACT24239.1| bifunctional polyribonucleotide nucleotidyltransferase gpsI
[Mycobacterium tuberculosis KZN 1435]
gi|289417247|gb|EFD14487.1| polyribonucleotide nucleotidyltransferase [Mycobacterium
tuberculosis T46]
gi|289421399|gb|EFD18600.1| bifunctional polyribonucleotide nucleotidyltransferase gpsI
[Mycobacterium tuberculosis CPHL_A]
gi|289438062|gb|EFD20555.1| bifunctional polyribonucleotide nucleotidyltransferase gpsI
[Mycobacterium tuberculosis KZN 605]
gi|289544716|gb|EFD48364.1| bifunctional polyribonucleotide nucleotidyltransferase gpsI
[Mycobacterium tuberculosis T17]
gi|289687114|gb|EFD54602.1| polyribonucleotide nucleotidyltransferase [Mycobacterium
tuberculosis 02_1987]
gi|289692027|gb|EFD59456.1| bifunctional polyribonucleotide nucleotidyltransferase gpsI
[Mycobacterium tuberculosis T92]
gi|289710461|gb|EFD74477.1| guanosine pentaphosphate synthetase + polyribonucleotide
nucleotidyltransferase [Mycobacterium tuberculosis GM
1503]
gi|289714474|gb|EFD78486.1| polyribonucleotide nucleotidyltransferase [Mycobacterium
tuberculosis T85]
gi|298496043|gb|EFI31337.1| guanosine pentaphosphate synthetase/polyribonucleotide
nucleotidyltransferase [Mycobacterium tuberculosis
94_M4241A]
gi|308326219|gb|EFP15070.1| bifunctional polyribonucleotide nucleotidyltransferase gpsI
[Mycobacterium tuberculosis SUMu002]
gi|308329777|gb|EFP18628.1| bifunctional polyribonucleotide nucleotidyltransferase gpsI
[Mycobacterium tuberculosis SUMu003]
gi|308333383|gb|EFP22234.1| bifunctional polyribonucleotide nucleotidyltransferase gpsI
[Mycobacterium tuberculosis SUMu004]
gi|308337406|gb|EFP26257.1| bifunctional polyribonucleotide nucleotidyltransferase gpsI
[Mycobacterium tuberculosis SUMu005]
gi|308341071|gb|EFP29922.1| bifunctional polyribonucleotide nucleotidyltransferase gpsI
[Mycobacterium tuberculosis SUMu006]
gi|308346145|gb|EFP34996.1| bifunctional polyribonucleotide nucleotidyltransferase gpsI
[Mycobacterium tuberculosis SUMu007]
gi|308348876|gb|EFP37727.1| bifunctional polyribonucleotide nucleotidyltransferase gpsI
[Mycobacterium tuberculosis SUMu008]
gi|308353596|gb|EFP42447.1| bifunctional polyribonucleotide nucleotidyltransferase gpsI
[Mycobacterium tuberculosis SUMu009]
gi|308365003|gb|EFP53854.1| bifunctional polyribonucleotide nucleotidyltransferase gpsI
[Mycobacterium tuberculosis SUMu012]
gi|323718629|gb|EGB27793.1| bifunctional polyribonucleotide nucleotidyltransferase gpsI
[Mycobacterium tuberculosis CDC1551A]
gi|326904398|gb|EGE51331.1| bifunctional polyribonucleotide nucleotidyltransferase gpsI
[Mycobacterium tuberculosis W-148]
gi|328457906|gb|AEB03329.1| bifunctional polyribonucleotide nucleotidyltransferase gpsI
[Mycobacterium tuberculosis KZN 4207]
Length = 752
Score = 140 bits (353), Expect = 2e-31, Method: Composition-based stats.
Identities = 44/245 (17%), Positives = 82/245 (33%), Gaps = 12/245 (4%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKH 56
R+ GR +R +S V A GS L + G+T +L TL+ + +
Sbjct: 345 FRIDGRGITDIRALSAEVAVVPRAHGSALFERGETQILGVTTLDMIKMAQQIDSLGPETS 404
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P STG + + R+ G RAL V+ I
Sbjct: 405 KRYMHHYNFPPFSTGETGRVGSPKRREIGHGAL----AERALVPVLPSVEEFPYAIRQVS 460
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCG---MLCGYP 173
+ + ++G T ++ + +AL + ++ + V +
Sbjct: 461 EALGSNGSTSMGSVCASTLALLNAGVPLKAPVAGIAMGLVSDDIQVEGAVDGVVERRFVT 520
Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
+ D+ ED+ D+D T + +Q + L AKD ++++
Sbjct: 521 LTDILGAEDAFGDMDFKVAGTKDF-VTALQLDTKLDGIPSQVLAGALEQAKDARLTILEV 579
Query: 234 QKDVI 238
+ I
Sbjct: 580 MAEAI 584
>gi|313204132|ref|YP_004042789.1| polyribonucleotide nucleotidyltransferase [Paludibacter
propionicigenes WB4]
gi|312443448|gb|ADQ79804.1| polyribonucleotide nucleotidyltransferase [Paludibacter
propionicigenes WB4]
Length = 713
Score = 140 bits (353), Expect = 2e-31, Method: Composition-based stats.
Identities = 49/242 (20%), Positives = 87/242 (35%), Gaps = 18/242 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
RL GR+ ++R I A GS + G+T LTT TL +EK+
Sbjct: 318 RLDGRKTTEIRPIWSEVDYLPGAHGSAVFTRGETQSLTTVTLGTKMDEKLVDDALFKGKE 377
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P STG V R+ G RAL++++ + + D
Sbjct: 378 RFLLHYNFPPFSTGEAKASRGVGRREVGHGNL----ALRALKNMIP--ENYPYVVRVVSD 431
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+++++G + A + +AL D ++ + + + + + D+
Sbjct: 432 ILESNGSSSMATVCAGTLALMDAGVQIKKPVSGIAMGLISE-------NKGKNFAVLSDI 484
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T G I Q + S + LN AK ++ ++
Sbjct: 485 LGDEDHLGDMDFKVTGTKDG-ITATQMDIKVDGLSYEILETALNQAKAGRMHILGKIQET 543
Query: 238 IS 239
+
Sbjct: 544 LE 545
Score = 103 bits (257), Expect = 2e-20, Method: Composition-based stats.
Identities = 39/235 (16%), Positives = 80/235 (34%), Gaps = 27/235 (11%)
Query: 7 QENQMREISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT----KHGWITA 61
R IS+ ++K A+GS +V+ GDT LL T + + A
Sbjct: 9 TLGDGRTISIETGKLAKQADGSVMVRMGDTMLLATVCSAQDAVPGTDFMPLSVDYKEKYA 68
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
+G P R GR + R++ RALR +
Sbjct: 69 AFGRFPGGFLKR------EGRASDYEILVSRLVDRALRPLFPDDFHAETF---------- 112
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
++ + D L + + G ++ + + G +++ + +
Sbjct: 113 ---VNVMLVSSDGEDMPDALAGLAASAALAVSDVPFNGPISEVRVARIDGQFVINPTFAQ 169
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+T D++ T +I+ V+ E S++ + +A + I ++Q +
Sbjct: 170 LATADLEIMVAATID-NIMMVE--GEMKEVSEEVLLEAMKVAHEAIKVHCQVQLE 221
>gi|255534604|ref|YP_003094975.1| Polyribonucleotide nucleotidyltransferase [Flavobacteriaceae
bacterium 3519-10]
gi|255340800|gb|ACU06913.1| Polyribonucleotide nucleotidyltransferase [Flavobacteriaceae
bacterium 3519-10]
Length = 780
Score = 140 bits (353), Expect = 2e-31, Method: Composition-based stats.
Identities = 49/242 (20%), Positives = 79/242 (32%), Gaps = 18/242 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
+RL GR +R I A GS + G+T LT TL + + +
Sbjct: 320 IRLDGRTPETIRPIWSEVDYLPGAHGSAVFTRGETQSLTAVTLGSVKDANMVDSVAINYD 379
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P STG S R+ G QR + R + A I I
Sbjct: 380 EKFFLHYNFPPFSTGEARPLRGTSRREVGHGNLAQRALSRIIP------AENPYTIRIVS 433
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
D+++++G + A + +AL D + + + V + D
Sbjct: 434 DILESNGSSSMATVCAGTLALMDAGVQITKPVSGIAMGLVTDPESG-------KFTVLSD 486
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T G I Q + S D L A++ ++
Sbjct: 487 ILGDEDHLGDMDFKVTGTADG-ITACQMDIKIQGLSMDIMETALKQAREGRLHILGEMLK 545
Query: 237 VI 238
+
Sbjct: 546 TL 547
Score = 106 bits (263), Expect = 4e-21, Method: Composition-based stats.
Identities = 38/241 (15%), Positives = 75/241 (31%), Gaps = 28/241 (11%)
Query: 7 QENQMREISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITA 61
Q REI++ ++K A GS +V+ G T LL T V +
Sbjct: 12 QLKDGREITIETGKLAKQANGSVVVRMGGTMLLATVVANKDASPGVDFLPLTVDYREKFY 71
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
G +P + R R R++ R LR + Q++I
Sbjct: 72 SGGKIPGNFFRR------EARPSDEEILTMRLVDRVLRPLFPDDFHAEVQVMISLISYDK 125
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
+ L + + G ++ ++ + G +V+
Sbjct: 126 ECMPEA-------------LAGLAASAAIAITDIPFNGPMSEVTVARIDGQLVVNPSREN 172
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
D++ T IV V+ +++ + A + I ++ Q + ++
Sbjct: 173 LDKADLNILVGATKD-SIVMVE--GVMDEITEEEMIEAIKFAHEEIKVQVEAQ-ERLAER 228
Query: 242 V 242
V
Sbjct: 229 V 229
>gi|226306131|ref|YP_002766091.1| guanosine pentaphosphate synthetase/polynucleotide phosphorylase
[Rhodococcus erythropolis PR4]
gi|257096704|sp|C0ZYB7|PNP_RHOE4 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|226185248|dbj|BAH33352.1| guanosine pentaphosphate synthetase/polynucleotide phosphorylase
[Rhodococcus erythropolis PR4]
Length = 756
Score = 140 bits (353), Expect = 2e-31, Method: Composition-based stats.
Identities = 44/242 (18%), Positives = 82/242 (33%), Gaps = 14/242 (5%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKH 56
R+ GR +R +S + A GS L + G+T +L TL+ + +
Sbjct: 356 FRIDGRGVTDIRSLSAEVAIIPRAHGSALFERGETQILGVTTLDMVKMAQQVDSLGPETT 415
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P STG + + R+ G RAL V+ I
Sbjct: 416 KRYMHHYNFPPYSTGETGRVGSPKRREIGHGAL----AERALMPVLPSVEEFPYAIRQVS 471
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+ + ++G T ++ + +AL + + + V G + D
Sbjct: 472 EALSSNGSTSMGSVCASTLALLNAGVPLRAPVAGIAMGLVSDQ-----VDGETRYVALTD 526
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED+ D+D T + +Q + L+ AKD ++++ +
Sbjct: 527 ILGAEDAFGDMDFKVAGTKDF-VTALQLDTKLDGIPSQVLAGALSQAKDARTTILEVMAE 585
Query: 237 VI 238
I
Sbjct: 586 AI 587
>gi|229490937|ref|ZP_04384772.1| polyribonucleotide nucleotidyltransferase [Rhodococcus erythropolis
SK121]
gi|229322327|gb|EEN88113.1| polyribonucleotide nucleotidyltransferase [Rhodococcus erythropolis
SK121]
Length = 756
Score = 140 bits (352), Expect = 2e-31, Method: Composition-based stats.
Identities = 44/242 (18%), Positives = 82/242 (33%), Gaps = 14/242 (5%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKH 56
R+ GR +R +S + A GS L + G+T +L TL+ + +
Sbjct: 356 FRIDGRGVTDIRSLSAEVAIIPRAHGSALFERGETQILGVTTLDMVKMAQQVDSLGPETT 415
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P STG + + R+ G RAL V+ I
Sbjct: 416 KRYMHHYNFPPYSTGETGRVGSPKRREIGHGAL----AERALMPVLPSVEEFPYAIRQVS 471
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+ + ++G T ++ + +AL + + + V G + D
Sbjct: 472 EALSSNGSTSMGSVCASTLALLNAGVPLRAPVAGIAMGLVSDQ-----VDGETRYVALTD 526
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED+ D+D T + +Q + L+ AKD ++++ +
Sbjct: 527 ILGAEDAFGDMDFKVAGTKDF-VTALQLDTKLDGIPSQVLAGALSQAKDARTTILEVMAE 585
Query: 237 VI 238
I
Sbjct: 586 AI 587
>gi|229820964|ref|YP_002882490.1| guanosine pentaphosphate synthetase I/polyribonucleotide
nucleotidyltransferase [Beutenbergia cavernae DSM 12333]
gi|259534112|sp|C5BWR2|PNP_BEUC1 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|229566877|gb|ACQ80728.1| guanosine pentaphosphate synthetase I/polyribonucleotide
nucleotidyltransferase [Beutenbergia cavernae DSM 12333]
Length = 744
Score = 140 bits (352), Expect = 2e-31, Method: Composition-based stats.
Identities = 40/242 (16%), Positives = 80/242 (33%), Gaps = 14/242 (5%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
R+ GR +R ++ V GS L + G+T +L TL E+ +
Sbjct: 339 FRIDGRGLKDIRPLTAEVEVLPRVHGSALFERGETQILGVTTLNMLKMEQQLDTLSPVSR 398
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P STG + + R+ G RAL V+ I
Sbjct: 399 KRYMHNYNFPPYSTGETGRVGSPKRREIGHGAL----AERALVPVLPARDEFPYAIRQVS 454
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+ + ++G T ++ + +++ + + + V G + D
Sbjct: 455 EALSSNGSTSMGSVCASTLSMLNAGVPLRAPVAGIAMGLVSDE-----VDGETRYATLTD 509
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED+ D+D T + +Q + L+ A++ ++ + +
Sbjct: 510 ILGAEDAFGDMDFKVAGTREF-VTAIQLDTKLDGIPASVLAGALSQAREARLHILDVMAE 568
Query: 237 VI 238
I
Sbjct: 569 AI 570
Score = 75.7 bits (184), Expect = 5e-12, Method: Composition-based stats.
Identities = 41/241 (17%), Positives = 67/241 (27%), Gaps = 39/241 (16%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGD-THLLTTATLE----EKVPMWIRNTKHGWITAEYGM 65
R + ++K A G+ L + T +L+T E+ + G
Sbjct: 21 RTVRFETGRLAKQAAGAVLATLDEDTVVLSTTAAGKHPKEQFDFFPLTVDVEERQYAAGK 80
Query: 66 LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125
+P S R GR + R+I R LR + Q++ I D
Sbjct: 81 IPGSFFRR------EGRPSTEAILACRLIDRPLRPLFVKGLRNEVQVVETILAIHPDDSY 134
Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185
AI A + G V + ++ G + Y E
Sbjct: 135 DVLAINAASASTQ-------------ISGLPFSGPVGGVRVALIDGTWVGFPRYSEKERA 181
Query: 186 DVDANFVM---TDSGHIVEVQGSAERATF-----------SQDHFFAMLNLAKDRIADLI 231
D D I V+ A + +++ L AK I L
Sbjct: 182 VFDMVVAGRVVGDDVAITMVEAEATDNAWELIKGEGAGAPTEEVVAEGLEAAKPFIRALC 241
Query: 232 K 232
+
Sbjct: 242 E 242
>gi|225351118|ref|ZP_03742141.1| hypothetical protein BIFPSEUDO_02704 [Bifidobacterium
pseudocatenulatum DSM 20438]
gi|225158574|gb|EEG71816.1| hypothetical protein BIFPSEUDO_02704 [Bifidobacterium
pseudocatenulatum DSM 20438]
Length = 887
Score = 140 bits (352), Expect = 2e-31, Method: Composition-based stats.
Identities = 45/241 (18%), Positives = 85/241 (35%), Gaps = 14/241 (5%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +R +S + GS L + G+T +L TL E+ + +
Sbjct: 346 RIDGRGLRDIRTLSAEVDIVPRVHGSALFQRGETQILGVTTLNMLKMEQQIDALSGPQSK 405
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y M P STG + + R+ G +AL V+ I +
Sbjct: 406 RYMHNYEMPPYSTGETGRVGSPKRREIGHGAL----AEKALVPVMPSREEFPYAIRQVSE 461
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
I ++G T ++ + ++L ++ + V + G + D+
Sbjct: 462 AIGSNGSTSMGSVCASTLSLLAAGVPLKAPVAGIAMGLV-----SGDVDGQHIFKTLTDI 516
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED+ D+D T I +Q + D + L AK+ ++++ +
Sbjct: 517 LGAEDAFGDMDFKVAGTSEF-ITALQLDTKLDGIPADILASALQQAKEARTTILEVINEC 575
Query: 238 I 238
I
Sbjct: 576 I 576
>gi|332076425|gb|EGI86888.1| polyribonucleotide nucleotidyltransferase [Streptococcus pneumoniae
GA41301]
Length = 737
Score = 140 bits (352), Expect = 2e-31, Method: Composition-based stats.
Identities = 42/244 (17%), Positives = 80/244 (32%), Gaps = 18/244 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56
+R GR+ +++R + GS L G T L+ T E ++ +
Sbjct: 317 VRPDGRKVDEIRPLDAVVDFLPRVHGSGLFTRGQTQALSVLTLAPMGETQIIDGLDPEYK 376
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y S G + A R+ G RAL V+ I +
Sbjct: 377 KRFIHHYNFPQYSVGETGRYGAPGRREIGHGALG----ERALAQVLPSLEEFPYAIRLVA 432
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V++++G + A+I +AL ++ + + + D
Sbjct: 433 EVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISD---------GNNYTVLTD 483
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T G I +Q + + + L AK +++ + +
Sbjct: 484 IQGLEDHFGDMDFKVAGTRDG-ITALQMDIKIQGITAEILTEALAQAKKARFEILDVIEA 542
Query: 237 VISN 240
I
Sbjct: 543 TIPE 546
Score = 112 bits (280), Expect = 4e-23, Method: Composition-based stats.
Identities = 42/232 (18%), Positives = 85/232 (36%), Gaps = 26/232 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKV---PMWIRNTKHGWITAEYGMLP 67
RE+ + V+K A GS +V++G++ +LT A + +K+ + + G P
Sbjct: 13 RELIVETGQVAKQANGSVVVRYGESTVLTAAVMSKKMATGDFFPLQVNYEEKMYAAGKFP 72
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R GR + R+I R +R + Q+I +
Sbjct: 73 GGFMKR------EGRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDENASAPM 126
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
AA+ G+ +A G +A + G + G I++ + +
Sbjct: 127 AAMFGSSLA-------------LSISDIPFDGPIAGVQVGYVDGQIIINPSQEQAEQSLL 173
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
+ T I V+ A+ S++ L + + +LI Q+++++
Sbjct: 174 ELTVAGTKH-AINMVESGAKE--LSEEIMLEALLKGHEAVKELIAFQEEIVA 222
>gi|315122006|ref|YP_004062495.1| polynucleotide phosphorylase/polyadenylase [Candidatus Liberibacter
solanacearum CLso-ZC1]
gi|313495408|gb|ADR52007.1| polynucleotide phosphorylase/polyadenylase [Candidatus Liberibacter
solanacearum CLso-ZC1]
Length = 699
Score = 140 bits (352), Expect = 2e-31, Method: Composition-based stats.
Identities = 50/244 (20%), Positives = 87/244 (35%), Gaps = 18/244 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
+R+ GR +R+IS + + GS G T + TL +E+ + T+
Sbjct: 312 IRMDGRDVETVRDISAQVGLLQRTHGSSFFSRGSTQAIVVVTLGTKEDEQYVDSLAGTQR 371
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P S G + A S R+ G + RA+ ++ +A + I
Sbjct: 372 NDFMMHYNFFPFSVGEVGRIGAPSRREIGHGRL----ARRAIHPILPQAAQFPYTLRIVS 427
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
++ ++G + A + GA +AL D + + V + +
Sbjct: 428 EITGSNGSSSMATVCGASLALMDAGVPISKPVAGIAMGLVKEDDQFVVLSD--------- 478
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED +D TDSG I +Q + S+D L K ++
Sbjct: 479 ISGEEDHFGHMDFKVSGTDSG-ITAMQMDMKIRGISKDIIMVALQQGKRGRLHILNEMSK 537
Query: 237 VISN 240
VIS
Sbjct: 538 VISE 541
Score = 103 bits (257), Expect = 2e-20, Method: Composition-based stats.
Identities = 33/233 (14%), Positives = 73/233 (31%), Gaps = 28/233 (12%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----HGWITAEYGML 66
R + L +++ ++G+ L +G+T +L T + + + T G +
Sbjct: 14 RPLKLETGRIAQQSDGAVLATYGETVVLATVVFDRNLKKDQDFFPLTVNYQERTYAVGKI 73
Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
P R R I RMI R++R + Q+II+ +
Sbjct: 74 PGGYLRR------ESRPTENEVLISRMIDRSIRPLFPKHYKNETQVIINVMQHDLENDPH 127
Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
++ AL +G +A + +++ +
Sbjct: 128 VVSMVAVSAALM-------------LSGLPFEGPIAGAQVDYVDDKYVLNPPLDGEK-GS 173
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
+D T ++ V+ A + S+D + +I+ ++
Sbjct: 174 LDLFVSGTRD-AVLMVELEANQ--LSEDVVLDAIMFGHAECKPVIEAISKLVK 223
>gi|294675265|ref|YP_003575881.1| polyribonucleotide nucleotidyltransferase [Prevotella ruminicola
23]
gi|294472822|gb|ADE82211.1| polyribonucleotide nucleotidyltransferase [Prevotella ruminicola
23]
Length = 792
Score = 140 bits (352), Expect = 2e-31, Method: Composition-based stats.
Identities = 48/244 (19%), Positives = 86/244 (35%), Gaps = 18/244 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56
+RL GR+ +++R I GS + G+T L+T T L+EK+ + +
Sbjct: 323 IRLDGRKTDEIRPIWCEVSPLPMPHGSSIFTRGETQSLSTCTLGTKLDEKMVDDVLEHGY 382
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P TG + V R+ G R L+ + + +
Sbjct: 383 QRFLLHYNFPPFCTGEAKAQRGVGRREIGHGHL----AWRGLKGQIP--EDFPYTVRLVS 436
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+++++G + A + +AL D M+ + + + G + D
Sbjct: 437 QILESNGSSSMATVCAGTLALMDAGVPMKKPVSGIAMGLIKN-------PGEDKYAVLSD 489
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T G + Q + S D L AK ++K D
Sbjct: 490 ILGDEDHLGDMDFKTTGTKDG-LTATQMDIKCDGLSFDILEKALMQAKAGREHILKCLTD 548
Query: 237 VISN 240
I+
Sbjct: 549 TIAE 552
Score = 95.7 bits (236), Expect = 5e-18, Method: Composition-based stats.
Identities = 36/237 (15%), Positives = 72/237 (30%), Gaps = 20/237 (8%)
Query: 7 QENQMREISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGM 65
Q R I++ V+K +GS +++ +T LL T + E
Sbjct: 9 QLADGRTITIETGKVAKQTDGSVVLRMNNTVLLATVCAAKDAVPGTDFMPLQVDYREQYS 68
Query: 66 LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125
G+ R++ R LR + + + +
Sbjct: 69 AAGRFP--GGFTKREGKASDNEILTSRLVDRVLRPLFPSNYHAEVFVNVMLLSADGIDQP 126
Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185
A A AL + ++ + + G ++D + +
Sbjct: 127 DALAGFAASAALAC-------------SDIPFECPISEVRVARVNGEYVIDPTFEQMKNA 173
Query: 186 DVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNEV 242
D+D + +I+ V+ E S+ L A I + +LQ + +S E+
Sbjct: 174 DMDIMV-GASAENIMMVE--GEMKEVSEQDMIGALKAAMAAIKPMCELQAE-LSKEL 226
>gi|15639871|ref|NP_219321.1| polynucleotide phosphorylase/polyadenylase [Treponema pallidum
subsp. pallidum str. Nichols]
gi|189026109|ref|YP_001933881.1| polynucleotide phosphorylase/polyadenylase [Treponema pallidum
subsp. pallidum SS14]
gi|81344924|sp|O83856|PNP_TREPA RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|226704828|sp|B2S4C3|PNP_TREPS RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|3323203|gb|AAC26576.1| polyribonucleotide nucleotidyltransferase (pnp) [Treponema pallidum
subsp. pallidum str. Nichols]
gi|189018684|gb|ACD71302.1| polyribonucleotide nucleotidyltransferase [Treponema pallidum
subsp. pallidum SS14]
gi|291060245|gb|ADD72980.1| polyribonucleotide nucleotidyltransferase [Treponema pallidum
subsp. pallidum str. Chicago]
Length = 702
Score = 140 bits (352), Expect = 2e-31, Method: Composition-based stats.
Identities = 43/243 (17%), Positives = 81/243 (33%), Gaps = 19/243 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
+R+ GR + +R I+ V GS + G+T L TL + +V I +
Sbjct: 313 LRIDGRAIDAIRPIACEVGVLPRPHGSAVFTRGETQSLAVVTLGAMSDGQVYDDIEGDRR 372
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P S G + R+ G R+L +V+ + +
Sbjct: 373 ENFILHYNFPPFSVGEIGRMGVGR-REIGHGCL----AHRSLSAVIPDPEQFPYTVRVVS 427
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
++++++G + A + ++L ++ + + G AI
Sbjct: 428 EILESNGSSSMATVCSGTLSLLHAGVPIKKPVAGIAMGLITDGVRYAILSD--------- 478
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T G I Q + S L A+ ++ +
Sbjct: 479 ILGEEDHLGDMDFKVAGTCDG-ITGFQMDVKVEAVSASLMKEALQQARVGRLHILSVMNQ 537
Query: 237 VIS 239
IS
Sbjct: 538 TIS 540
Score = 91.4 bits (225), Expect = 9e-17, Method: Composition-based stats.
Identities = 41/228 (17%), Positives = 72/228 (31%), Gaps = 27/228 (11%)
Query: 13 EISLTRRV-SKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRN----TKHGWITAEYGMLP 67
+ L ++ A GS ++ T +L T + + G +P
Sbjct: 13 PLLLESGYLARQANGSVYLQCEGTAILATVCSSAQRQEGLDYVPLTVDFNEKYYAVGKMP 72
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R GR R I R+I R +R + + ++ C
Sbjct: 73 GGFIKR------EGRPKDREILISRLIDRPMRPLFEKEFGRDIHVVPTCISSDMVHPHDV 126
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
AI + A+ G VAA+ L G +++ + + +
Sbjct: 127 LAIVASSAAV-------------TLSDIPFHGPVAAVRVAYLNGSYVINPTFSQIDAASM 173
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
+ T G I V+G A S+D L A++ I L +Q+
Sbjct: 174 EVVVAGTRQG-ITMVEGGARE--VSEDLMLGALEQAQEHIKALCDMQE 218
>gi|229818418|ref|ZP_04448699.1| hypothetical protein BIFANG_03725 [Bifidobacterium angulatum DSM
20098]
gi|229784288|gb|EEP20402.1| hypothetical protein BIFANG_03725 [Bifidobacterium angulatum DSM
20098]
Length = 893
Score = 140 bits (352), Expect = 2e-31, Method: Composition-based stats.
Identities = 46/241 (19%), Positives = 85/241 (35%), Gaps = 14/241 (5%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +R +S + GS L + G+T +L TL E+ + +
Sbjct: 346 RIDGRGLRDIRTLSAEVDIVPRVHGSALFQRGETQILGVTTLNMLKMEQQLDSLSGPQSK 405
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y M P STG + + R+ G +AL V+ I +
Sbjct: 406 RYMHNYEMPPYSTGETGRVGSPKRREIGHGAL----AEKALVPVLPSREEFPYAIRQVSE 461
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
I ++G T ++ + ++L ++ + V + G + D+
Sbjct: 462 AIGSNGSTSMGSVCASTLSLLAAGVPLKAPVAGIAMGLV-----SGDVDGKHIFKTLTDI 516
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED+ D+D T I +Q + D A L AK+ ++++ +
Sbjct: 517 LGAEDAFGDMDFKVAGTSEF-ITALQLDTKLDGIPADILAAALQQAKEARTTILEVINEC 575
Query: 238 I 238
I
Sbjct: 576 I 576
Score = 74.1 bits (180), Expect = 2e-11, Method: Composition-based stats.
Identities = 33/251 (13%), Positives = 72/251 (28%), Gaps = 41/251 (16%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGD-THLLTTATLE----EKVPMWIRNTKHGWITAEYGM 65
R + +++ A+G+ D T +L+T T E + G
Sbjct: 21 RTLRFETGRLAQQADGAVAAYLDDDTMILSTTTAGSSPKENYDFFPLTVDVEEKMYAAGK 80
Query: 66 LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125
+P S R GR + R+I R LR + + Q++ +
Sbjct: 81 IPGSFFRR------EGRPSSEAILACRIIDRPLRPLFPHTLRNEVQVVETILAVNPQDAY 134
Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185
A+ A + +G V+ + ++ G + + +
Sbjct: 135 DVIALNAASASTM-------------ISGLPFEGPVSGVRLALIDGQWVAFPTWDQRERA 181
Query: 186 DVDANFVM----TDSGHIVEVQGSAERATFS-----------QDHFFAMLNLAKDRIADL 230
+ I ++ A + + ++ L AK I +
Sbjct: 182 VFEIVVAGRVIENGDVAIAMIEAGAGKNAWHLIYDEGQTKPDEEVVAGGLEAAKPFIKVI 241
Query: 231 IKLQKDVISNE 241
+ Q + + +
Sbjct: 242 CEAQNE-LKEK 251
>gi|300779041|ref|ZP_07088899.1| polyribonucleotide nucleotidyltransferase [Chryseobacterium gleum
ATCC 35910]
gi|300504551|gb|EFK35691.1| polyribonucleotide nucleotidyltransferase [Chryseobacterium gleum
ATCC 35910]
Length = 751
Score = 140 bits (352), Expect = 2e-31, Method: Composition-based stats.
Identities = 52/244 (21%), Positives = 81/244 (33%), Gaps = 18/244 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
+RL GR +R I A GS + G+T LT TL + + +
Sbjct: 322 IRLDGRDPQTIRPIWSEIDYLPGAHGSAIFTRGETQSLTAVTLGSVKDANMIDSVITQHD 381
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P STG S R+ G RAL +V+ I I
Sbjct: 382 ERFFLHYNFPPFSTGEARPLRGTSRREVGHGNL----AQRALTAVIPAE--NPYTIRIVS 435
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
D+++++G + A + +AL D + + + + + D
Sbjct: 436 DILESNGSSSMATVCAGTLALMDAGVQITKPVSGIAMGLITDTKSG-------KFTVLSD 488
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T G I Q + S D L AKD ++ +
Sbjct: 489 ILGDEDHLGDMDFKVTGTADG-ITACQMDIKIQGLSMDIMEKALMQAKDGRLHILNKITE 547
Query: 237 VISN 240
IS
Sbjct: 548 TISQ 551
Score = 105 bits (262), Expect = 5e-21, Method: Composition-based stats.
Identities = 43/241 (17%), Positives = 76/241 (31%), Gaps = 28/241 (11%)
Query: 7 QENQMREISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEK----VPMWIRNTKHGWITA 61
REI++ ++K A+GS +VK G T LL T ++ V +
Sbjct: 12 TLADGREITIETGKLAKQADGSVVVKCGGTMLLATVVANKEANPGVDFLPLTVDYREKFY 71
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
G +P + R + R++ R LR + Q++I
Sbjct: 72 AGGRIPGNFFRR------EAKPSDDEVLTMRLVDRVLRPLFPEDFHAEVQVMISLISYDK 125
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
+ L + + G ++ + G V+ Y
Sbjct: 126 EVMPEA-------------LAGLAASAAIAITDIPFNGPMSEARVVRIDGELSVNPSYEN 172
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
D+D T IV V+ E S+ +N A I I+ Q + ++ +
Sbjct: 173 LLKSDIDIMVGATKD-SIVMVE--GEMKEISEQEMLEAINFAHAEIRKQIEAQ-ERLAAK 228
Query: 242 V 242
V
Sbjct: 229 V 229
>gi|198274276|ref|ZP_03206808.1| hypothetical protein BACPLE_00417 [Bacteroides plebeius DSM 17135]
gi|198272951|gb|EDY97220.1| hypothetical protein BACPLE_00417 [Bacteroides plebeius DSM 17135]
Length = 727
Score = 140 bits (352), Expect = 2e-31, Method: Composition-based stats.
Identities = 48/243 (19%), Positives = 85/243 (34%), Gaps = 18/243 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
RL GR ++R I GS + G+T L+T TL +EK+ + +
Sbjct: 319 RLDGRATTEIRPIWCETSPLPGPHGSSIFTRGETQSLSTVTLGTKMDEKIVDDVLDQHKE 378
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P STG + V R+ G RAL+ + + + D
Sbjct: 379 RFLLHYNFPPFSTGEAKAQRGVGRREIGHGHL----AWRALKGQIPADY--PYCVRVVSD 432
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+++++G + A + +AL D ++ + + + G + D+
Sbjct: 433 ILESNGSSSMATVCAGTLALMDAGVPIKKPVSGIAMGLIKN-------AGEDKYAVLSDI 485
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T G I Q + + D L AK ++ +
Sbjct: 486 LGDEDHLGDMDFKVTGTRDG-ITATQMDIKCDGLTYDILEKALMQAKQGREYILGKLTEC 544
Query: 238 ISN 240
I+
Sbjct: 545 IAE 547
Score = 102 bits (255), Expect = 3e-20, Method: Composition-based stats.
Identities = 36/236 (15%), Positives = 71/236 (30%), Gaps = 20/236 (8%)
Query: 8 ENQMREISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGML 66
N R I+L ++K A+G+ +++ G+T LL T + E
Sbjct: 11 LNDGRTITLETGKLAKQADGAVMLRMGNTMLLATVCAAKDAVPGTDFMPLQVEYREKYSA 70
Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
G+ R++ RALR + + + I
Sbjct: 71 FGRFP--GGFTKREGKASDYEILTCRLVDRALRPLFPDNYHAEVYVNIILYSADGVDMPD 128
Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
L + + G ++ + + G +++ + D
Sbjct: 129 A-------------LAGLAASAALAVSDIPFGGPISEVRVARIDGQFVINPTFEALERAD 175
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNEV 242
+D T +I+ V+ E S+ + A + I K Q + + EV
Sbjct: 176 MDIMVAATYE-NIMMVE--GEMKEVSEQDLLEAMKFAHEAIKVHCKAQME-LMEEV 227
>gi|215431723|ref|ZP_03429642.1| polynucleotide phosphorylase/polyadenylase [Mycobacterium
tuberculosis EAS054]
Length = 743
Score = 140 bits (352), Expect = 2e-31, Method: Composition-based stats.
Identities = 44/245 (17%), Positives = 82/245 (33%), Gaps = 12/245 (4%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKH 56
R+ GR +R +S V A GS L + G+T +L TL+ + +
Sbjct: 336 FRIDGRGITDIRALSAEVAVVPRAHGSALFERGETQILGVTTLDMIKMAQQIDSLGPETS 395
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P STG + + R+ G RAL V+ I
Sbjct: 396 KRYMHHYNFPPFSTGETGRVGSPKRREIGHGAL----AERALVPVLPSVEEFPYAIRQVS 451
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCG---MLCGYP 173
+ + ++G T ++ + +AL + ++ + V +
Sbjct: 452 EALGSNGSTSMGSVCASTLALLNAGVPLKAPVAGIAMGLVSDDIQVEGAVDGVVERRFVT 511
Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
+ D+ ED+ D+D T + +Q + L AKD ++++
Sbjct: 512 LTDILGAEDAFGDMDFKVAGTKDF-VTALQLDTKLDGIPSQVLAGALEQAKDARLTILEV 570
Query: 234 QKDVI 238
+ I
Sbjct: 571 MAEAI 575
>gi|124022312|ref|YP_001016619.1| polynucleotide phosphorylase/polyadenylase [Prochlorococcus marinus
str. MIT 9303]
gi|187610312|sp|A2C794|PNP_PROM3 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|123962598|gb|ABM77354.1| polyribonucleotide nucleotidyltransferase [Prochlorococcus marinus
str. MIT 9303]
Length = 721
Score = 140 bits (352), Expect = 2e-31, Method: Composition-based stats.
Identities = 44/242 (18%), Positives = 87/242 (35%), Gaps = 19/242 (7%)
Query: 2 RLSGRQENQMREISLTRRVSK-YAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
R+ GR+ +++R I+ V GS L + G T +L+TATL + + +
Sbjct: 323 RVDGRKLDEVRTITSAAGVLPKRVHGSGLFQRGLTQVLSTATLGTPSDAQEMDDLNPGPE 382
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P S G + R+ G RA+ V+ + +
Sbjct: 383 KTYLHHYNFPPYSVGETRPMRSPGRREVGHGSL----AERAIIPVLPPKDTFPYVLRVVS 438
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V+ ++G T ++ G+ +AL D ++ + + + + + D
Sbjct: 439 EVLSSNGSTSMGSVCGSTLALMDAGVPLKAPVSGAAMGLIKEDAEI---------RILTD 489
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T G I +Q + +N A+ +++ +
Sbjct: 490 IQGIEDFLGDMDFKVAGTKDG-ITALQMDMKITGLPVKTIAEAVNQARPARIHILEKMLE 548
Query: 237 VI 238
I
Sbjct: 549 AI 550
Score = 109 bits (271), Expect = 5e-22, Method: Composition-based stats.
Identities = 54/235 (22%), Positives = 91/235 (38%), Gaps = 26/235 (11%)
Query: 10 QMREISLTRR-VSKYAEGSCLVKFGDTHLLTTA---TLEEKVPMWIRNTKHGWITAEYGM 65
REI LT + A GS +++ GDT +L TA T E + + G
Sbjct: 11 DGREIRLTTGRYAPQAGGSVMMECGDTSVLVTATRSTGREGIDFLPLICDYEERLYAAGR 70
Query: 66 LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125
+P S R GR R+ I R+I R +R + QI+ C +
Sbjct: 71 IPGSFMRR------EGRPPERATLIARLIDRPMRPLFPSWMRDDLQIVATCLSLDERVPA 124
Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185
A+TGA +A +G +AA+ G+L +++ Y E
Sbjct: 125 DVLAVTGASMATLLAGI-------------PFQGPMAAVRVGLLGDDFVLNPSYREIERG 171
Query: 186 DVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
D+D T G +V V+ A + + ++ + + +LIK Q+ ++ +
Sbjct: 172 DLDLVVAGTPDG-VVMVEAGANQ--LPEGDVIEAIDFGYEAVCELIKAQQSILKD 223
>gi|288556936|ref|YP_003428871.1| polynucleotide phosphorylase/polyadenylase [Bacillus pseudofirmus
OF4]
gi|288548096|gb|ADC51979.1| polynucleotide phosphorylase/polyadenylase [Bacillus pseudofirmus
OF4]
Length = 704
Score = 140 bits (352), Expect = 2e-31, Method: Composition-based stats.
Identities = 40/244 (16%), Positives = 83/244 (34%), Gaps = 18/244 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56
+R GR +++R ++ + GS L G T L+ T + ++ + +
Sbjct: 313 VRPDGRAIDEIRPLASQVDLLPRTHGSGLFTRGQTQALSICTLGALGDVQILDGLGIEES 372
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y S G R+ G RAL ++ I +
Sbjct: 373 KRFMHHYNFPQFSVGETGPIRGPGRREIGHGALG----ERALEPIIPSENDFPYTIRLVS 428
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V++++G T A+I + +A+ D ++ + V + +
Sbjct: 429 EVLESNGSTSQASICASTLAMMDAGVPIKAPVAGIAMGLVKQDEHLTVLTD--------- 479
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED+ D+D T G + +Q + + +++ L AK ++
Sbjct: 480 IQGMEDALGDMDFKVAGTKEG-VTALQMDIKISGINREVLEQALEQAKRGRMVILDNMLS 538
Query: 237 VISN 240
IS
Sbjct: 539 AISE 542
Score = 116 bits (289), Expect = 4e-24, Method: Composition-based stats.
Identities = 44/231 (19%), Positives = 86/231 (37%), Gaps = 26/231 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVP---MWIRNTKHGWITAEYGMLP 67
RE+++ +K A G+ LV++GDT +L+T T ++ + + G +P
Sbjct: 15 RELTVETGQFAKQANGAVLVRYGDTAVLSTVTASKEPKNLNFFPLTVNYEERLYAAGKIP 74
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R GR ++ R+I R +R + Q+I + + +
Sbjct: 75 GGFIKR------EGRPSEKAILASRLIDRPIRPLFPDGFRNEVQVISIVMSVDQNCSSEM 128
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
AA+ G+ +A G +A ++ G G I++ + D+
Sbjct: 129 AAMIGSSLA-------------LSISDIPFDGPIAGVTVGRKDGELIINPTTEQLEESDI 175
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
D T I V+ A+ ++ + D I L+ Q++V+
Sbjct: 176 DLVVAGTKD-AINMVEAGADEVP--EETMLEAIMYGHDEIKRLVAFQEEVV 223
>gi|308232239|ref|ZP_07664037.1| bifunctional polyribonucleotide nucleotidyltransferase gpsI
[Mycobacterium tuberculosis SUMu001]
gi|308379315|ref|ZP_07668942.1| bifunctional polyribonucleotide nucleotidyltransferase gpsI
[Mycobacterium tuberculosis SUMu010]
gi|308214573|gb|EFO73972.1| bifunctional polyribonucleotide nucleotidyltransferase gpsI
[Mycobacterium tuberculosis SUMu001]
gi|308357442|gb|EFP46293.1| bifunctional polyribonucleotide nucleotidyltransferase gpsI
[Mycobacterium tuberculosis SUMu010]
Length = 831
Score = 140 bits (352), Expect = 2e-31, Method: Composition-based stats.
Identities = 44/245 (17%), Positives = 82/245 (33%), Gaps = 12/245 (4%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKH 56
R+ GR +R +S V A GS L + G+T +L TL+ + +
Sbjct: 424 FRIDGRGITDIRALSAEVAVVPRAHGSALFERGETQILGVTTLDMIKMAQQIDSLGPETS 483
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P STG + + R+ G RAL V+ I
Sbjct: 484 KRYMHHYNFPPFSTGETGRVGSPKRREIGHGAL----AERALVPVLPSVEEFPYAIRQVS 539
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCG---MLCGYP 173
+ + ++G T ++ + +AL + ++ + V +
Sbjct: 540 EALGSNGSTSMGSVCASTLALLNAGVPLKAPVAGIAMGLVSDDIQVEGAVDGVVERRFVT 599
Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
+ D+ ED+ D+D T + +Q + L AKD ++++
Sbjct: 600 LTDILGAEDAFGDMDFKVAGTKDF-VTALQLDTKLDGIPSQVLAGALEQAKDARLTILEV 658
Query: 234 QKDVI 238
+ I
Sbjct: 659 MAEAI 663
>gi|325268379|ref|ZP_08135011.1| polyribonucleotide nucleotidyltransferase [Prevotella multiformis
DSM 16608]
gi|324989233|gb|EGC21184.1| polyribonucleotide nucleotidyltransferase [Prevotella multiformis
DSM 16608]
Length = 751
Score = 140 bits (352), Expect = 2e-31, Method: Composition-based stats.
Identities = 48/243 (19%), Positives = 86/243 (35%), Gaps = 18/243 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +++R I GS L + G+T L+T TL +EK+ + +
Sbjct: 325 RMDGRATDEIRPIWCEVDTLPMPHGSALFQRGETMSLSTCTLGTKMDEKMIDNVLEKSYQ 384
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P TG + V R+ G RAL+ + + +
Sbjct: 385 RFLLHYNFPPFCTGEAKAQRGVGRREIGHGHL----AWRALKGQIPAD--FPYTVRLVSQ 438
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+++++G + A + +AL D M+ + + + G + D+
Sbjct: 439 ILESNGSSSMATVCAGTLALMDAGVPMKKPVSGIAMGLIKN-------PGEDKYAVLSDI 491
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T G + Q + S + L AK ++ L D
Sbjct: 492 LGDEDHLGDMDFKTTGTRDG-LTATQMDIKCDGLSFEILEKALMQAKAGREHILNLLTDT 550
Query: 238 ISN 240
I+
Sbjct: 551 IAE 553
Score = 105 bits (262), Expect = 5e-21, Method: Composition-based stats.
Identities = 35/235 (14%), Positives = 73/235 (31%), Gaps = 25/235 (10%)
Query: 3 LSGRQENQMREISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
GR IS+ V+K A+G+ +++ G+T LL T ++
Sbjct: 11 PDGRT------ISIETGKVAKQADGAAVLRMGNTVLLATVCAAKEAVPGTDFMPLQVDYR 64
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
E G+ R++ R LR +
Sbjct: 65 EQYSAAGRYP--GGFTKREGKANDDEILTSRLVDRVLRPLFPSDYHCEVY---------- 112
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
+ ++ V D L + ++ + + + G ++D + +
Sbjct: 113 ---VQVMLLSADSVDQPDALAGFAASAALAASDIPIEHPTSEVRVARINGEYVIDPTFEQ 169
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
D+D T +I+ V+ E S+ L A + I + ++Q++
Sbjct: 170 MKEADMDLMVGATKD-NIMMVE--GEMDEVSEQDLIGALKAAHEAIKPMCEMQEE 221
>gi|289754889|ref|ZP_06514267.1| polyribonucleotide nucleotidyltransferase [Mycobacterium
tuberculosis EAS054]
gi|289695476|gb|EFD62905.1| polyribonucleotide nucleotidyltransferase [Mycobacterium
tuberculosis EAS054]
Length = 752
Score = 140 bits (352), Expect = 2e-31, Method: Composition-based stats.
Identities = 44/245 (17%), Positives = 82/245 (33%), Gaps = 12/245 (4%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKH 56
R+ GR +R +S V A GS L + G+T +L TL+ + +
Sbjct: 345 FRIDGRGITDIRALSAEVAVVPRAHGSALFERGETQILGVTTLDMIKMAQQIDSLGPETS 404
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P STG + + R+ G RAL V+ I
Sbjct: 405 KRYMHHYNFPPFSTGETGRVGSPKRREIGHGAL----AERALVPVLPSVEEFPYAIRQVS 460
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCG---MLCGYP 173
+ + ++G T ++ + +AL + ++ + V +
Sbjct: 461 EALGSNGSTSMGSVCASTLALLNAGVPLKAPVAGIAMGLVSDDIQVEGAVDGVVERRFVT 520
Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
+ D+ ED+ D+D T + +Q + L AKD ++++
Sbjct: 521 LTDILGAEDAFGDMDFKVAGTKDF-VTALQLDTKLDGIPSQVLAGALEQAKDARLTILEV 579
Query: 234 QKDVI 238
+ I
Sbjct: 580 MAEAI 584
>gi|256824776|ref|YP_003148736.1| polynucleotide phosphorylase/polyadenylase [Kytococcus sedentarius
DSM 20547]
gi|256688169|gb|ACV05971.1| guanosine pentaphosphate synthetase I/polynucleotide phosphorylase
[Kytococcus sedentarius DSM 20547]
Length = 842
Score = 140 bits (352), Expect = 2e-31, Method: Composition-based stats.
Identities = 39/242 (16%), Positives = 83/242 (34%), Gaps = 14/242 (5%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
+R+ GR +R +S + GS + + G+T ++ TL E+ +
Sbjct: 352 VRIDGRGPKDIRALSAEVQALPRVHGSAIFERGETQIMGVTTLNMLRMEQQLDGLNPVTR 411
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P STG + + R+ G RA+ V+ I
Sbjct: 412 KRYMHNYNFPPYSTGETGRVGSPKRREIGHGAL----AERAILPVLPSREEFPYAIRQVS 467
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+ + ++G T ++ + ++L + ++ + V +A G + D
Sbjct: 468 EALGSNGSTSMGSVCASTLSLLNAGVPLKAPVAGIAMGLV-----SAQVDGGTRYQALTD 522
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED+ D+D T + +Q + + L A++ ++ +
Sbjct: 523 ILGAEDAFGDMDFKVAGTKDF-VTAIQLDTKLDGIPAEELSKALTQAREARLHILDVMSQ 581
Query: 237 VI 238
I
Sbjct: 582 AI 583
Score = 73.0 bits (177), Expect = 3e-11, Method: Composition-based stats.
Identities = 43/249 (17%), Positives = 77/249 (30%), Gaps = 45/249 (18%)
Query: 12 REISLTRR-VSKYAEGSC---LVK--FGD-THLLTTATLEEKVPMWIRNT----KHGWIT 60
R I +++ A GS LV+ D T +L+T T ++
Sbjct: 21 RTIRFETGRLAQQAAGSVAAYLVEDDIDDATMVLSTTTAGKEPKDHFDFFPLTVDVEERM 80
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
G +P S R GR G + R+I R LR Q+++
Sbjct: 81 YAAGRIPGSFFRR------EGRPGTDAILTCRLIDRPLRPTFTKGLRNEVQVVVTVLAHH 134
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
D AI A + G + + ++ G + ++
Sbjct: 135 PDHQYDVLAINAASASTQ-------------ISGLPFSGPIGGVRISLIDGQWVAFPNFS 181
Query: 181 EDSTIDVDANFVM--TDSG--HIVEVQGSAERATF-----------SQDHFFAMLNLAKD 225
+ + D TD G I+ V+ + +T+ +++ L +K
Sbjct: 182 DIARSTFDMVVAGRLTDDGDVAIMMVEAESTESTWALVNDEGKTAPTEEVVSQGLEASKV 241
Query: 226 RIADLIKLQ 234
I L + Q
Sbjct: 242 FIRALCEAQ 250
>gi|78212120|ref|YP_380899.1| polynucleotide phosphorylase/polyadenylase [Synechococcus sp.
CC9605]
gi|123578701|sp|Q3AM38|PNP_SYNSC RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|78196579|gb|ABB34344.1| RNA binding S1 [Synechococcus sp. CC9605]
Length = 721
Score = 140 bits (352), Expect = 2e-31, Method: Composition-based stats.
Identities = 45/242 (18%), Positives = 90/242 (37%), Gaps = 19/242 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKY-AEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
R+ GR +++R+IS V GS L + G T +L+TATL + + +
Sbjct: 323 RVDGRGLDEVRQISAMAGVLPRRVHGSGLFQRGLTQVLSTATLGTPSDAQEMDDLHPNTE 382
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P S G + R+ G RA+ V+ + +
Sbjct: 383 KLYLHHYNFPPYSVGETRPMRSPGRREIGHGAL----AERAILPVLPEKDTFPYVVRVVS 438
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V+ ++G T ++ G+ ++L D ++ + + + +G + D
Sbjct: 439 EVLSSNGSTSMGSVCGSTLSLMDAGVPLKAPVSGAAMGLIKEGDEV---------RILTD 489
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D ++ G I +Q + S +N A+ +++ +
Sbjct: 490 IQGIEDFLGDMDFKVAGSEKG-ITALQMDMKITGLSVKTVAEAVNQARPARLHILEKMLE 548
Query: 237 VI 238
I
Sbjct: 549 AI 550
Score = 115 bits (287), Expect = 7e-24, Method: Composition-based stats.
Identities = 54/235 (22%), Positives = 88/235 (37%), Gaps = 26/235 (11%)
Query: 10 QMREISLTRR-VSKYAEGSCLVKFGDTHLLTTAT---LEEKVPMWIRNTKHGWITAEYGM 65
REI LT + A GS LV+ GDT +L TAT E + + G
Sbjct: 11 DGREIRLTTGRFAPQAGGSVLVECGDTAVLVTATRSGGREGIDFLPLICDYEERLYAAGR 70
Query: 66 LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125
+P S R R R+ R+I R +R + Q++ C +
Sbjct: 71 IPGSYMRR------ESRPPERATLTARLIDRPMRPLFPSWLRDDLQVVATCLSLDERVPA 124
Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185
A+TGA +A G +AA+ G+L +++ Y E
Sbjct: 125 DVLAVTGASIATLLAGI-------------PFNGPMAAVRVGLLGDDFVLNPSYREIERG 171
Query: 186 DVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
D+D T G +V V+ A + + ++ + I +LIK Q+ ++ +
Sbjct: 172 DLDLVVAGTPDG-VVMVEAGANQ--LPEQDVIEAIDFGYEAICELIKAQEQLLKD 223
>gi|78779675|ref|YP_397787.1| polynucleotide phosphorylase/polyadenylase [Prochlorococcus marinus
str. MIT 9312]
gi|123553957|sp|Q319U4|PNP_PROM9 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|78713174|gb|ABB50351.1| RNA binding S1 [Prochlorococcus marinus str. MIT 9312]
Length = 721
Score = 140 bits (352), Expect = 2e-31, Method: Composition-based stats.
Identities = 43/242 (17%), Positives = 91/242 (37%), Gaps = 19/242 (7%)
Query: 2 RLSGRQENQMREISLTRRVSK-YAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
R+ GR+ +++R+IS + + GS L + G T +L+T TL + + + +
Sbjct: 323 RVDGRELDEVRKISASAGILPKRVHGSALFQRGLTQVLSTTTLGTPSDAQEMDDLNPSTE 382
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P S G R+ G RA+ V+ + +
Sbjct: 383 KTYLHHYNFPPFSVGETRPMRTPGRREIGHGAL----AERAIIPVLPGKETFPYVLRVVS 438
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V+ ++G T ++ G+ ++L D ++ + + + +G + D
Sbjct: 439 EVLSSNGSTSMGSVCGSTLSLLDAGVPLKALVSGTAMGLIKEGKEI---------RILTD 489
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T+ G I +Q + S + A+ +++ ++
Sbjct: 490 IQGIEDFLGDMDFKVAGTEKG-ITALQMDMKITGLSVSVISDAIKKARPARLHILEKMQE 548
Query: 237 VI 238
I
Sbjct: 549 AI 550
Score = 100 bits (248), Expect = 2e-19, Method: Composition-based stats.
Identities = 55/235 (23%), Positives = 89/235 (37%), Gaps = 26/235 (11%)
Query: 10 QMREISLTRR-VSKYAEGSCLVKFGDTHLLTTATLE---EKVPMWIRNTKHGWITAEYGM 65
REI LT + A GS +++ GDT LL TAT E + G
Sbjct: 11 DGREIRLTTGLYAPQANGSVMIECGDTSLLVTATKTTKKEVADFLPLICDYEEKLYAAGR 70
Query: 66 LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125
+P R GR R+ I R+I R +R + QI+ C +
Sbjct: 71 IPGGFMRR------EGRPPERATLISRLIDRPMRPLFPSWMRDEIQIVASCLSLDERVPA 124
Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185
A+TGA +A G +AA+ G++ I++ Y E
Sbjct: 125 DVLAVTGASIAT-------------LLGEIPFHGPMAAVRVGLIGDDFILNPSYREIEKG 171
Query: 186 DVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
D+D + G IV ++ A + S+ ++ + + +LIK Q D++ +
Sbjct: 172 DLDIVVAGSPDG-IVMIEAGANQ--LSEQDTIEAIDFGYESVTELIKSQVDLLKD 223
>gi|225854123|ref|YP_002735635.1| polynucleotide phosphorylase/polyadenylase [Streptococcus
pneumoniae JJA]
gi|254782740|sp|C1CCW4|PNP_STRZJ RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|225723734|gb|ACO19587.1| polyribonucleotide nucleotidyltransferase
(Polynucleotidephosphorylase) (PNPase) (Vegetative
protein 15) (VEG15) [Streptococcus pneumoniae JJA]
Length = 737
Score = 140 bits (352), Expect = 2e-31, Method: Composition-based stats.
Identities = 42/244 (17%), Positives = 80/244 (32%), Gaps = 18/244 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56
+R GR+ +++R + GS L G T L+ T E ++ +
Sbjct: 317 VRPDGRKVDEIRPLDAVVDFLPRVHGSGLFTRGQTQALSVLTLAPMGETQIIDGLDLEYK 376
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y S G + A R+ G RAL V+ I +
Sbjct: 377 KRFMHHYNFPQYSVGETGRYGAPGRREIGHGALG----ERALAQVLPSLEEFPYAIRLVA 432
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V++++G + A+I +AL ++ + + + D
Sbjct: 433 EVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISD---------GNNYTVLTD 483
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T G I +Q + + + L AK +++ + +
Sbjct: 484 IQGLEDHFGDMDFKVAGTRDG-ITALQMDIKIQGITAEILTEALAQAKKARFEILDVIEA 542
Query: 237 VISN 240
I
Sbjct: 543 TIPE 546
Score = 112 bits (279), Expect = 5e-23, Method: Composition-based stats.
Identities = 42/232 (18%), Positives = 85/232 (36%), Gaps = 26/232 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKV---PMWIRNTKHGWITAEYGMLP 67
RE+ + V+K A GS +V++G++ +LT A + +K+ + + G P
Sbjct: 13 RELIVETGQVAKQANGSVVVRYGESTVLTAAVMSKKMATGDFFPLQVNYEEKMYAAGKFP 72
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R GR + R+I R +R + Q+I +
Sbjct: 73 GGFMKR------EGRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDENASAPM 126
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
AA+ G+ +A G +A + G + G I++ + +
Sbjct: 127 AAMFGSSLA-------------LSISDIPFDGPIAGVQVGYVDGQIIINPSQEQAEQSLL 173
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
+ T I V+ A+ S++ L + + +LI Q+++++
Sbjct: 174 ELTVAGTKH-AINMVESGAKE--LSEEIMLEALLKGHEAVKELIAFQEEIVA 222
>gi|158313041|ref|YP_001505549.1| polynucleotide phosphorylase/polyadenylase [Frankia sp. EAN1pec]
gi|226702654|sp|A8L6G1|PNP_FRASN RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|158108446|gb|ABW10643.1| guanosine pentaphosphate synthetase I/polyribonucleotide
nucleotidyltransferase [Frankia sp. EAN1pec]
Length = 729
Score = 140 bits (352), Expect = 2e-31, Method: Composition-based stats.
Identities = 40/243 (16%), Positives = 82/243 (33%), Gaps = 18/243 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKH 56
+R+ GR ++RE+S GS L + G+T +L TL E+ + +
Sbjct: 337 VRIDGRSTTEIRELSAEVDYIPRVHGSALFERGETQILGVTTLAMLRMEQTVDTLNPDRT 396
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P STG + + R+ G RAL V+ I
Sbjct: 397 KRYMHNYNFPPYSTGETGRVGSPKRREIGHGAL----AERALLPVLPSREEFPYAIRQVS 452
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+ + ++G T ++ + ++L + ++ + + +G
Sbjct: 453 EALSSNGSTSMGSVCASTLSLLNAGVPLKAPVAGIAMGLIREGDAFVTLTD--------- 503
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED+ D+D T + +Q + L A+ ++++ +
Sbjct: 504 ILGAEDAYGDMDFKVAGTQEF-VTALQLDTKLDGIPASVLAGALQQARAARLTILEVMAE 562
Query: 237 VIS 239
I
Sbjct: 563 AIG 565
Score = 89.5 bits (220), Expect = 4e-16, Method: Composition-based stats.
Identities = 43/245 (17%), Positives = 73/245 (29%), Gaps = 39/245 (15%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKHGWITAEYGML 66
R + +++ A G+ + GDT +L+ T+ E++ + G +
Sbjct: 19 RTVRFETGRLARQAAGAVVAHLGDTMVLSATTVSRSPKEQLDFFPLTVDVEERMYAAGRI 78
Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
P S R GR + R+I R LR Q++ + D
Sbjct: 79 PGSFFRR------EGRPSEDAILTCRLIDRPLRPSFAKGLRNEIQVVATVLALDPDTLYD 132
Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
AI A + G + A G + G I + E
Sbjct: 133 VVAINAASASTMLAG-------------LPFSGPIGATRVGYVDGDWIAFPTHSELERAT 179
Query: 187 VDANFVM-----TDSGHIVEVQGSAERATF----------SQDHFFAMLNLAKDRIADLI 231
D I+ V+ A T +++ A L AK I +L
Sbjct: 180 FDMVVAGRVLEDGSDVAIMMVEAEATPGTVALVAGGAPAPTEEVVAAGLEAAKPAIRELC 239
Query: 232 KLQKD 236
+ Q +
Sbjct: 240 RAQSE 244
>gi|295698477|ref|YP_003603132.1| polyribonucleotide nucleotidyltransferase [Candidatus Riesia
pediculicola USDA]
gi|291157180|gb|ADD79625.1| polyribonucleotide nucleotidyltransferase [Candidatus Riesia
pediculicola USDA]
Length = 705
Score = 140 bits (352), Expect = 2e-31, Method: Composition-based stats.
Identities = 48/240 (20%), Positives = 91/240 (37%), Gaps = 10/240 (4%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+R+ GR+ N++R+I V GS L G+T L TL + IR+ G
Sbjct: 319 IRIDGRKLNEIRKIDCRVGVLSRTHGSSLFTRGETQTLVIVTLGNERDAQIRDEIVGEKL 378
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
+ + V + G R ++ R + +V+ + S I + +VI+
Sbjct: 379 DHFILHYNFLPYSVGEIGLVGVPKRREIGHGNLVKRGMIAVMPNFSNFSYTIRVVSEVIE 438
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
++G + A+ G +A+ D ++ + + + I +
Sbjct: 439 SNGSSSMASACGTSLAMMDAGIPIKSAIAGISIGLIKEKENFVILSD---------ILGD 489
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
ED D+D + + G I +Q + + L AK+ ++K K+ ISN
Sbjct: 490 EDHFGDMDFKVMGNEEG-ISALQMDLKINGIEDEILRFALFQAKEARCKILKKMKNAISN 548
Score = 86.8 bits (213), Expect = 2e-15, Method: Composition-based stats.
Identities = 37/233 (15%), Positives = 77/233 (33%), Gaps = 29/233 (12%)
Query: 16 LTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVP-----MWIRNTKHGWITAEYGMLPRS 69
+ +++ + S ++ G T +L + + + + + + G +P S
Sbjct: 22 IETGSLARQSTSSLIIHMGGTSVLISVVEQTEEKKQESNFFPLIVNYQERSYSIGRIPGS 81
Query: 70 TGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAA 129
R GR G R+I R+LR QII + +
Sbjct: 82 FFRR------EGRSGENEILTSRLIDRSLRPAFPEQFRNEIQIIATVVSVNPKINPDILS 135
Query: 130 ITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDA 189
I GA A G + ++ G + G I++ Y + ++D
Sbjct: 136 IIGASAA-------------LSISHIPFHGPIGSVRIGYIGGRYILNPSYEDLKESELDL 182
Query: 190 NFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNEV 242
T+ I+ V+ A + +D ++ +K +I +S ++
Sbjct: 183 IVSGTED-KILMVE--ARSSLLKEDIILEAIDFSKKYQKTIIDNINK-LSEKI 231
>gi|260436528|ref|ZP_05790498.1| polyribonucleotide nucleotidyltransferase [Synechococcus sp. WH
8109]
gi|260414402|gb|EEX07698.1| polyribonucleotide nucleotidyltransferase [Synechococcus sp. WH
8109]
Length = 721
Score = 140 bits (352), Expect = 2e-31, Method: Composition-based stats.
Identities = 45/242 (18%), Positives = 90/242 (37%), Gaps = 19/242 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKY-AEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
R+ GR +++R+IS V GS L + G T +L+TATL + + +
Sbjct: 323 RVDGRGLDEVRQISAMAGVLPRRVHGSGLFQRGLTQVLSTATLGTPSDAQEMDDLHPNTE 382
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P S G + R+ G RA+ V+ + +
Sbjct: 383 KLYLHHYNFPPYSVGETRPMRSPGRREIGHGAL----AERAILPVLPEKDTFPYVVRVVS 438
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V+ ++G T ++ G+ ++L D ++ + + + +G + D
Sbjct: 439 EVLSSNGSTSMGSVCGSTLSLMDAGVPLKAPVSGAAMGLIKEGDEV---------RILTD 489
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D ++ G I +Q + S +N A+ +++ +
Sbjct: 490 IQGIEDFLGDMDFKVAGSEKG-ITALQMDMKITGLSVKTVAEAVNQARPARLHILEKMLE 548
Query: 237 VI 238
I
Sbjct: 549 AI 550
Score = 114 bits (286), Expect = 9e-24, Method: Composition-based stats.
Identities = 53/235 (22%), Positives = 88/235 (37%), Gaps = 26/235 (11%)
Query: 10 QMREISLTRR-VSKYAEGSCLVKFGDTHLLTTAT---LEEKVPMWIRNTKHGWITAEYGM 65
REI LT + A GS LV+ GDT +L TAT + + + G
Sbjct: 11 DGREIRLTTGRFAPQAGGSVLVECGDTAVLVTATRSGGRDGIDFLPLICDYEERLYAAGR 70
Query: 66 LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125
+P S R R R+ R+I R +R + Q++ C +
Sbjct: 71 IPGSYMRR------ESRPPERATLTARLIDRPMRPLFPSWLRDDLQVVATCLSLDERVPA 124
Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185
A+TGA +A G +AA+ G+L +++ Y E
Sbjct: 125 DVLAVTGASIATLLAGI-------------PFNGPMAAVRVGLLGDDFVLNPSYREIERG 171
Query: 186 DVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
D+D T G +V V+ A + + ++ + I +LIK Q+ ++ +
Sbjct: 172 DLDLVVAGTPDG-VVMVEAGANQ--LPEQDVIEAIDFGYEAICELIKAQEQLLKD 223
>gi|318040477|ref|ZP_07972433.1| polynucleotide phosphorylase/polyadenylase [Synechococcus sp.
CB0101]
Length = 715
Score = 140 bits (352), Expect = 2e-31, Method: Composition-based stats.
Identities = 46/244 (18%), Positives = 88/244 (36%), Gaps = 19/244 (7%)
Query: 2 RLSGRQENQMREISLTRRVSK-YAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
R+ GR +++R IS V GS L + G T +L+ ATL + + + +
Sbjct: 323 RVDGRNLDEVRPISAAAGVLPKRVHGSGLFQRGLTQVLSCATLGTPSDAQEMDDLNPSNE 382
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P STG + R+ G RAL V+ + +
Sbjct: 383 KTYLHHYNFPPYSTGETKPMRSPGRREIGHGAL----AERALIPVLPSKESFPYVLRVVS 438
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+ + ++G T ++ G+ +AL D ++ + + + +G + D
Sbjct: 439 ECLSSNGSTSMGSVCGSTLALMDAGVPLKAPVSGAAMGLIKEGKEV---------RILTD 489
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T+ G I +Q + +N A+ +++ +
Sbjct: 490 IQGIEDFLGDMDFKVAGTEKG-ITALQMDMKITGLEVKTVAEAINQARPARLHILEKMLE 548
Query: 237 VISN 240
I
Sbjct: 549 AIEK 552
Score = 112 bits (280), Expect = 4e-23, Method: Composition-based stats.
Identities = 52/235 (22%), Positives = 87/235 (37%), Gaps = 26/235 (11%)
Query: 10 QMREISLTRR-VSKYAEGSCLVKFGDTHLLTTAT---LEEKVPMWIRNTKHGWITAEYGM 65
REI LT + A GS +V+ GDT +L TAT E + + G
Sbjct: 11 DGREIRLTTGRFAPQAGGSVMVECGDTAVLVTATRSGGREGIDFLPLICDYEERLYAAGR 70
Query: 66 LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125
+P S R R R+ I R+I R +R + QI+ C +
Sbjct: 71 IPGSFMRR------ESRPPERATLIARLIDRPMRPLFPSWLRDDLQIVATCMSLDERVPP 124
Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185
A+TGA +A +AA+ G+L +++ Y E
Sbjct: 125 DVLAVTGASLATLLAKIPFHG-------------PMAAVRVGLLGDDFVLNPSYREIERS 171
Query: 186 DVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
D+D T G ++ V+ A + + ++ + + +LIK Q+ ++
Sbjct: 172 DLDLVVAGTPEG-VIMVEAGANQ--LPEQDVIEAIDFGYEAVCELIKAQQALLKE 223
>gi|160932224|ref|ZP_02079615.1| hypothetical protein CLOLEP_01059 [Clostridium leptum DSM 753]
gi|156868826|gb|EDO62198.1| hypothetical protein CLOLEP_01059 [Clostridium leptum DSM 753]
Length = 733
Score = 140 bits (352), Expect = 2e-31, Method: Composition-based stats.
Identities = 45/237 (18%), Positives = 82/237 (34%), Gaps = 18/237 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +QMR ++ + GS + G T ++T ATL ++++ I +
Sbjct: 315 RVDGRAMDQMRPLAAEVGLLPRVHGSGMFTRGQTQVITAATLGPVSDQQLLDGIDGEEFK 374
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
+Y S G R+ G RAL V+ + +
Sbjct: 375 RYMHQYNFPSYSVGETRPSRGPGRREIGHGAL----AERALLPVIPPVEEFPYAYRLVSE 430
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
V+ ++G T A+I G+ +AL D ++ + +G +VD+
Sbjct: 431 VVSSNGSTSQASICGSTLALMDAGVPIKAPVAGISCGLITEGE---------RWMTMVDI 481
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
ED D+D T G I +Q + + + L ++
Sbjct: 482 QGLEDFFGDMDFKVAGTHEG-ITAIQMDLKIDGLTPEIVKEALEKTHKARDYILDEI 537
Score = 96.8 bits (239), Expect = 2e-18, Method: Composition-based stats.
Identities = 35/229 (15%), Positives = 72/229 (31%), Gaps = 27/229 (11%)
Query: 12 REISLTRRVSKY-AEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKHGWITAEYGML 66
R + + A G+C V++GDT + T + + + + G +
Sbjct: 15 RPLKIETGKIAQLANGACFVRYGDTVVNVAVTASAKPRDGIDFFPLSVDFEEKLYAVGKI 74
Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
P S R GR ++ R+I R +R + ++ + D
Sbjct: 75 PGSFLKR------EGRPSDKAILTSRVIDRPIRPLFPKDMRNDVSVVCTVMSVDPDCSPE 128
Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
AA+ G A KG ++ +S G + G +++ +
Sbjct: 129 IAAMVGTSAA-------------LSISDIPWKGPISGVSVGYVDGEYVINPTAEQREKSQ 175
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
+ T I ++ A S + + + + +I+ K
Sbjct: 176 MAVTVAST-DKLIAMIEAGANE--VSDEVMYNGIMAGHEANQKIIEFIK 221
>gi|288801722|ref|ZP_06407164.1| polyribonucleotide nucleotidyltransferase [Prevotella
melaninogenica D18]
gi|288335764|gb|EFC74197.1| polyribonucleotide nucleotidyltransferase [Prevotella
melaninogenica D18]
Length = 742
Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats.
Identities = 45/243 (18%), Positives = 85/243 (34%), Gaps = 18/243 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +++R I GS L + G+T L+T TL +EK+ + +
Sbjct: 316 RMDGRATDEIRPIWCEIDTLPMPHGSSLFQRGETMSLSTCTLGTKMDEKMVDNVLEKSYQ 375
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P TG + V R+ G R L+ + + +
Sbjct: 376 RFLLHYNFPPFCTGEAKAQRGVGRREIGHGHL----AWRGLKGQIPAD--FPYTVRLVSQ 429
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+++++G + A + +AL D M+ + + + G + D+
Sbjct: 430 ILESNGSSSMATVCAGTLALMDAGVPMKKPVSGIAMGLIKN-------PGEDKYAVLSDI 482
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T G + Q + S + L AK ++ + +
Sbjct: 483 LGDEDHLGDMDFKTTGTKDG-LTATQMDIKCDGLSFEILEKALMQAKAAREHILNIMTET 541
Query: 238 ISN 240
I+
Sbjct: 542 IAE 544
Score = 104 bits (258), Expect = 1e-20, Method: Composition-based stats.
Identities = 34/235 (14%), Positives = 75/235 (31%), Gaps = 25/235 (10%)
Query: 3 LSGRQENQMREISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
GR IS+ V+K A+G+ +++ G+T LL T ++
Sbjct: 2 PDGRT------ISIETGKVAKQADGAAVLRMGNTVLLATVCAAKEAVPGTDFMPLQVDYR 55
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
E G+ R++ R LR +
Sbjct: 56 EQYAAAGRYP--GGFTKREGKANDDEILTSRLVDRVLRPLFPSDYHCEVY---------- 103
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
+ ++ V D L + ++ ++ + + + G +++ + +
Sbjct: 104 ---VQVMLLSADGVDQPDALAGLAASASLAASDIPIEHTTSEVRVARVNGEYVINPTFEQ 160
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
D+D T +I+ V+ E S+ L A + I + ++Q++
Sbjct: 161 MKEADMDLMVGATKD-NIMMVE--GEMDEVSEQDLIGALKAAHEAIKPMCEMQEE 212
>gi|86742236|ref|YP_482636.1| polynucleotide phosphorylase/polyadenylase [Frankia sp. CcI3]
gi|123764534|sp|Q2J735|PNP_FRASC RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|86569098|gb|ABD12907.1| Polyribonucleotide nucleotidyltransferase [Frankia sp. CcI3]
Length = 729
Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats.
Identities = 39/244 (15%), Positives = 80/244 (32%), Gaps = 18/244 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKH 56
+R+ GR ++R +S GS L + G+T +L TL E+ + +
Sbjct: 337 VRIDGRSTTEIRALSAEVDYIPRVHGSALFERGETQILGVTTLAMLRMEQTVDTLNPDRT 396
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P STG + + R+ G RAL V+ I
Sbjct: 397 KRYMHNYNFPPYSTGETGRVGSPKRREIGHGAL----AERALLPVLPSREEFPYAIRQVS 452
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+ + ++G T ++ + ++L + ++ + +
Sbjct: 453 EALGSNGSTSMGSVCASTLSLLNAGVPLKAPVAGIAMGLIHADDSYVTLTD--------- 503
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED+ D+D T + +Q + A L A+ ++ + +
Sbjct: 504 ILGAEDAYGDMDFKVAGTRDF-VTALQLDTKLDGIPASVLAAALQQARGARLAILDVMAE 562
Query: 237 VISN 240
I +
Sbjct: 563 AIGS 566
Score = 91.8 bits (226), Expect = 8e-17, Method: Composition-based stats.
Identities = 44/252 (17%), Positives = 76/252 (30%), Gaps = 41/252 (16%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT----KHGWITAEYGML 66
R + ++K A GS + GDT +L+ T+ ++ + G +
Sbjct: 19 RTVRFETGRLAKQAAGSAVAYLGDTMVLSATTVSKQPKEQLDFFPLTVDVEERMYAAGRI 78
Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
P S R GR + R+I R LR Q++ + D
Sbjct: 79 PGSFFRR------EGRPSEDAILTCRLIDRPLRPSFAKGLRNEIQVVATVLALDPDTLYD 132
Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
AI A + G + A G + G I + E +
Sbjct: 133 VVAINAASAST-------------TLSGLPFTGPIGATRVGFVDGEWIAFPTHAELARAT 179
Query: 187 VDANFVM-----TDSGHIVEVQGSAERATF----------SQDHFFAMLNLAKDRIADLI 231
D I+ V+ A T +++ A L AK I +L
Sbjct: 180 FDMVVAGRVIEDGSDVAIMMVEAEATPGTVELLAHGAPAPTEEVVAAGLEAAKPAIRELC 239
Query: 232 KLQKD--VISNE 241
+ Q + ++ +
Sbjct: 240 RAQSELAALAAK 251
>gi|302344869|ref|YP_003813222.1| polyribonucleotide nucleotidyltransferase [Prevotella
melaninogenica ATCC 25845]
gi|302149149|gb|ADK95411.1| polyribonucleotide nucleotidyltransferase [Prevotella
melaninogenica ATCC 25845]
Length = 742
Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats.
Identities = 45/243 (18%), Positives = 85/243 (34%), Gaps = 18/243 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +++R I GS L + G+T L+T TL +EK+ + +
Sbjct: 316 RMDGRATDEIRPIWCEIDTLPMPHGSSLFQRGETMSLSTCTLGTKMDEKMVDNVLEKSYQ 375
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P TG + V R+ G R L+ + + +
Sbjct: 376 RFLLHYNFPPFCTGEAKAQRGVGRREIGHGHL----AWRGLKGQIPAD--FPYTVRLVSQ 429
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+++++G + A + +AL D M+ + + + G + D+
Sbjct: 430 ILESNGSSSMATVCAGTLALMDAGVPMKKPVSGIAMGLIKN-------PGEDKYAVLSDI 482
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T G + Q + S + L AK ++ + +
Sbjct: 483 LGDEDHLGDMDFKTTGTKDG-LTATQMDIKCDGLSFEILEKALMQAKAAREHILNIMTET 541
Query: 238 ISN 240
I+
Sbjct: 542 IAE 544
Score = 104 bits (258), Expect = 1e-20, Method: Composition-based stats.
Identities = 34/235 (14%), Positives = 74/235 (31%), Gaps = 25/235 (10%)
Query: 3 LSGRQENQMREISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
GR IS+ V+K A+G+ +++ G+T LL T ++
Sbjct: 2 PDGRT------ISIETGKVAKQADGAAVLRMGNTVLLATVCAAKEAVPGTDFMPLQVDYR 55
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
E G+ R++ R LR +
Sbjct: 56 EQYAAAGRYP--GGFTKREGKANDDEILTSRLVDRVLRPLFPSDYHCEVY---------- 103
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
+ ++ V D L + + ++ + + + G +++ + +
Sbjct: 104 ---VQVMLLSADGVDQPDALAGLAASAALAASDIPIEHTTSEVRVARVNGEYVINPTFEQ 160
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
D+D T +I+ V+ E S+ L A + I + ++Q++
Sbjct: 161 MKEADMDLMVGATKD-NIMMVE--GEMDEVSEQDLIGALKAAHEAIKPMCEMQEE 212
>gi|84496941|ref|ZP_00995795.1| putative polyribonucleotide nucleotidyltransferase [Janibacter sp.
HTCC2649]
gi|84383709|gb|EAP99590.1| putative polyribonucleotide nucleotidyltransferase [Janibacter sp.
HTCC2649]
Length = 807
Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats.
Identities = 41/242 (16%), Positives = 85/242 (35%), Gaps = 14/242 (5%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
+R+ GR +R +S V GS + + G+T ++ TL E+ +
Sbjct: 347 VRIDGRGLADIRALSAEVEVLPRVHGSAIFERGETQIMGVTTLNMLRMEQQLDTLSPVTR 406
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P STG + + R+ G RAL V+ I
Sbjct: 407 KRYMHNYNFPPYSTGETGRVGSPKRREIGHGAL----AERALMPVLPTREEFPYAIRQVS 462
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+ + ++G T ++ + ++L + + + V +A G+ + D
Sbjct: 463 EALSSNGSTSMGSVCASTLSLLNAGVPLRAPVAGIAMGLV-----SAEVDGVTQYAALTD 517
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED+ D+D T + +Q + + + L A++ ++ + +
Sbjct: 518 ILGAEDAFGDMDFKVAGTREF-VTAIQLDTKLDGIPAEVLGSALTQAREARLHILDVMNE 576
Query: 237 VI 238
I
Sbjct: 577 AI 578
Score = 69.5 bits (168), Expect = 4e-10, Method: Composition-based stats.
Identities = 40/243 (16%), Positives = 67/243 (27%), Gaps = 41/243 (16%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGD-THLLTTATLE----EKVPMWIRNTKHGWITAEYGM 65
R + ++K A G+ + T LL+T T E + G
Sbjct: 21 RTVRFETGRLAKQAGGAVSAYLDEDTMLLSTTTAGKHPREGFDFFPLTVDVEERMYAAGK 80
Query: 66 LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125
+P S R GR + R+I R LR Q++I + D
Sbjct: 81 IPGSFFRR------EGRPSTEAILTCRLIDRPLRPTFKKGLRNEVQVVISVLALNPDAQY 134
Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185
AI A + G + A+ ++ + + +
Sbjct: 135 DVLAINAASASTQ-------------ISGLPFSGPIGAVRVSLINDQWVAFPQFSDIERS 181
Query: 186 DVDANFVM-----TDSGHIVEVQGSAERATF-----------SQDHFFAMLNLAKDRIAD 229
D I+ V+ A T+ ++D L AK I
Sbjct: 182 TFDMVVAGRIVDDGSDVAIMMVEAEATEQTWNLVKNEGKTAPTEDVVAQGLEAAKGFIKV 241
Query: 230 LIK 232
L +
Sbjct: 242 LCE 244
>gi|315612684|ref|ZP_07887596.1| polyribonucleotide nucleotidyltransferase [Streptococcus sanguinis
ATCC 49296]
gi|315315271|gb|EFU63311.1| polyribonucleotide nucleotidyltransferase [Streptococcus sanguinis
ATCC 49296]
Length = 754
Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats.
Identities = 42/244 (17%), Positives = 80/244 (32%), Gaps = 18/244 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56
+R GR+ +++R + GS L G T L+ T E ++ +
Sbjct: 334 VRPDGRKVDEIRPLDAVVDYLPRVHGSGLFTRGQTQALSVLTLAPMGETQIIDGLDPEYK 393
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y S G + A R+ G RAL V+ I +
Sbjct: 394 KRFMHHYNFPQYSVGETGRYGAPGRREIGHGALG----ERALAQVLPSLEEFPYAIRLVA 449
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V++++G + A+I +AL ++ + + + D
Sbjct: 450 EVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISD---------GNNYTVLTD 500
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T G I +Q + + + L AK +++ + +
Sbjct: 501 IQGLEDHFGDMDFKVAGTREG-ITALQMDIKIQGITAEILTEALAQAKKARFEILDVIEA 559
Query: 237 VISN 240
I
Sbjct: 560 TIPE 563
Score = 112 bits (280), Expect = 4e-23, Method: Composition-based stats.
Identities = 42/232 (18%), Positives = 85/232 (36%), Gaps = 26/232 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKV---PMWIRNTKHGWITAEYGMLP 67
RE+ + V+K A GS +V++G++ +LT A + +K+ + + G P
Sbjct: 30 RELIVETGQVAKQANGSVVVRYGESTVLTAAVMSKKMATGDFFPLQVNYEEKMYAAGKFP 89
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R GR + R+I R +R + Q+I +
Sbjct: 90 GGFMKR------EGRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDENASAPM 143
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
AA+ G+ +A G +A + G + G I++ + +
Sbjct: 144 AAMFGSSLA-------------LSISDIPFDGPIAGVQVGYVDGQIIINPTQEQAEQSLL 190
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
+ T I V+ A+ S++ L + + +LI Q+++++
Sbjct: 191 ELTVAGTKH-AINMVESGAKE--LSEEIMLEALLKGHEAVKELIAFQEEIVA 239
>gi|72161188|ref|YP_288845.1| polynucleotide phosphorylase/polyadenylase [Thermobifida fusca YX]
gi|123629954|sp|Q47RU5|PNP_THEFY RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|71914920|gb|AAZ54822.1| polyribonucleotide nucleotidyltransferase [Thermobifida fusca YX]
Length = 767
Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats.
Identities = 42/244 (17%), Positives = 82/244 (33%), Gaps = 18/244 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
+R+ GR +R ++ V GS L + G+T +L TL E+ + +
Sbjct: 337 VRIDGRGVKDIRSLTAEVNVIPRVHGSALFERGETQILGITTLNMLRMEQTIDTLNPERT 396
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P STG + A R+ G RAL V+ I
Sbjct: 397 KRYMHNYNFPPYSTGETGRVGAPKRREIGHGAL----AERALVPVLPSREEFPYAIRQVS 452
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+ I ++G T ++ + ++L ++D + + +
Sbjct: 453 EAIGSNGSTSMGSVCASTMSLMAAGVPLKDMVAGIAMGLIYEDGKYVTLTD--------- 503
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED+ D+D T I +Q + + + L A+ ++ + +
Sbjct: 504 ILGAEDAYGDMDFKVAGTRD-LITALQLDTKLDGIPAEVLASALQQARGARLAILDVMSE 562
Query: 237 VISN 240
I+
Sbjct: 563 AINR 566
Score = 77.6 bits (189), Expect = 1e-12, Method: Composition-based stats.
Identities = 39/246 (15%), Positives = 70/246 (28%), Gaps = 39/246 (15%)
Query: 12 REISLTRR-VSKYAEGSCLVKFG-DTHLLTTATLEEKVPMWIRNT----KHGWITAEYGM 65
R I +++ A GS +T +L+ T+ ++ + G
Sbjct: 19 RTIRFETGRLARQATGSATAYLDDETMVLSATTVSKRPKEALDFFPLTVDVEERMYAAGR 78
Query: 66 LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125
+P S R GR + R+I R LR QI+ + D
Sbjct: 79 IPGSFFRR------EGRPSEDAILTCRLIDRPLRPSFQKGLRNEIQIVATVLALHPDHLY 132
Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185
AI A ++ G + + ++ G + + E +
Sbjct: 133 DVIAINAASMSTQLAG-------------LPFSGPIGGVRVALVEGQWVAFPTHSELANA 179
Query: 186 DVDANFVM----TDSGHIVEVQGSAERATF----------SQDHFFAMLNLAKDRIADLI 231
D I+ V+ + T ++ L AK I L
Sbjct: 180 TFDMVVAGRVLDNGDVAIMMVEAESTPHTLRLVAEGAIGPNEQTVAEGLEAAKPFIKVLC 239
Query: 232 KLQKDV 237
+ Q+ V
Sbjct: 240 RAQQTV 245
>gi|148240244|ref|YP_001225631.1| polynucleotide phosphorylase/polyadenylase [Synechococcus sp. WH
7803]
gi|187611326|sp|A5GN19|PNP_SYNPW RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|147848783|emb|CAK24334.1| Polyribonucleotide nucleotidyltransferase [Synechococcus sp. WH
7803]
Length = 721
Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats.
Identities = 48/242 (19%), Positives = 90/242 (37%), Gaps = 19/242 (7%)
Query: 2 RLSGRQENQMREISLTRRVSK-YAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
R+ GR +Q+R IS V GS L + G T +L+TATL + + + +
Sbjct: 323 RVDGRSLDQVRPISAAAGVLPKRVHGSGLFQRGLTQVLSTATLGTPSDAQEMDDLNPSTE 382
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P S G + R+ G RA+ V+ + +
Sbjct: 383 KTYLHHYNFPPYSVGETKPMRSPGRREIGHGAL----AERAILPVLPAKDTFPYVVRVVS 438
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V+ ++G T ++ G+ +AL D ++ + + + +G + D
Sbjct: 439 EVLSSNGSTSMGSVCGSTLALMDAGVPLKAPVSGAAMGLIKEGDEV---------RILTD 489
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D TD G I +Q + + +N A+ +++ +
Sbjct: 490 IQGIEDFLGDMDFKVAGTDKG-ITALQMDMKITGLAMGTIAEAINQARPARLHILEKMME 548
Query: 237 VI 238
I
Sbjct: 549 AI 550
Score = 113 bits (281), Expect = 3e-23, Method: Composition-based stats.
Identities = 53/235 (22%), Positives = 89/235 (37%), Gaps = 26/235 (11%)
Query: 10 QMREISLTRR-VSKYAEGSCLVKFGDTHLLTTAT---LEEKVPMWIRNTKHGWITAEYGM 65
REI LT + A GS +++ GDT +L TAT E + + G
Sbjct: 11 DGREIRLTTGRYAPQAGGSVMIECGDTSVLVTATRSSGREGIDFLPLICDYEERLYAAGR 70
Query: 66 LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125
+P S R GR R+ I R+I R +R + QI+ C +
Sbjct: 71 IPGSFMRR------EGRPPERATLISRLIDRPMRPLFPSWLRDDLQIVATCMSLDERVPA 124
Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185
++TGA +A +AA+ G+L +++ Y E
Sbjct: 125 DVLSVTGASMATLLAGIPFYG-------------PMAAVRVGLLGDDFVLNPSYREIERG 171
Query: 186 DVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
D+D T G IV V+ A + + ++ + + +LIK Q+ ++ +
Sbjct: 172 DLDLVVAGTPEG-IVMVEAGANQ--LPEQDVIEAIDFGYEAVCELIKAQESILKD 223
>gi|168184618|ref|ZP_02619282.1| polyribonucleotide nucleotidyltransferase [Clostridium botulinum
Bf]
gi|237795848|ref|YP_002863400.1| polynucleotide phosphorylase/polyadenylase [Clostridium botulinum
Ba4 str. 657]
gi|259534115|sp|C3L0B0|PNP_CLOB6 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|182672277|gb|EDT84238.1| polyribonucleotide nucleotidyltransferase [Clostridium botulinum
Bf]
gi|229263835|gb|ACQ54868.1| polyribonucleotide nucleotidyltransferase [Clostridium botulinum
Ba4 str. 657]
Length = 702
Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats.
Identities = 49/243 (20%), Positives = 85/243 (34%), Gaps = 16/243 (6%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHG 57
R GR N++R IS + G+ L G T ++T AT + ++ I +
Sbjct: 312 RPDGRAFNEVRPISCEVGILPRTHGTGLFTRGLTQVMTVATLGALGDVQILDGIAEEESK 371
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y S G R+ G RAL ++ I + +
Sbjct: 372 RYMHHYNFPSYSVGEVRPLRGPGRREIGHGAL----AERALEPLIPSEEEFPYTIRLVSE 427
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
V+ ++G T A++ G+ +AL D ++ + + + + I D+
Sbjct: 428 VLSSNGSTSQASVCGSTLALLDAGVPIKRPAAGIAMGLITSED-------LEKEKVITDI 480
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T+ G I +Q + A S L AK ++ K+
Sbjct: 481 QGIEDFFGDMDFKVAGTEKG-ITSIQFDTKIAGLSNSCVKDALEGAKKARLHILGKIKEC 539
Query: 238 ISN 240
I
Sbjct: 540 IPE 542
Score = 86.4 bits (212), Expect = 3e-15, Method: Composition-based stats.
Identities = 37/236 (15%), Positives = 82/236 (34%), Gaps = 31/236 (13%)
Query: 12 REISL---TRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----HGWITAEYG 64
R++ + + A + + +GDT ++ A ++ I + G
Sbjct: 12 RKMKVDFGKTGMLSNA--AIFMSYGDTVVMINANASKEPREGIDFFPLSVEYEERLYSVG 69
Query: 65 MLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGG 124
+P R G+ +S R I R LR + QI+ ++ D
Sbjct: 70 KIPGGFIKR------EGKPSDKSILHARSIDRPLRPLFPKGYRNDVQIVNTVLSVEQDNL 123
Query: 125 TRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDST 184
AI G+ +AL S VAA+S G++ G I++ +
Sbjct: 124 PEILAINGSSLALC-------------LSSIPFTTPVAAVSVGLVDGEFIINPTVAQREN 170
Query: 185 IDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
+D T ++ V+ + ++ ++ + + +++ Q++ ++
Sbjct: 171 TILDLTVCATKE-RVMMVEAGGQE--IDEETMYSAIMFGFEECKNIVAFQEEAVAK 223
>gi|77407938|ref|ZP_00784689.1| polyribonucleotide nucleotidyltransferase [Streptococcus agalactiae
COH1]
gi|77173485|gb|EAO76603.1| polyribonucleotide nucleotidyltransferase [Streptococcus agalactiae
COH1]
Length = 709
Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats.
Identities = 42/244 (17%), Positives = 79/244 (32%), Gaps = 18/244 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56
+R GR+ +++R + GS L G T L+ T E ++ +
Sbjct: 317 VRPDGRRVDEIRPLDAVIDFLPQVHGSGLFTRGQTQALSVLTLAPMGEAQIIDGLTPEYK 376
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y S G + A R+ G RAL V+ I +
Sbjct: 377 KRFMHHYNFPQYSVGETGRYGAAGRREIGHGALG----ERALEQVLPSLEEFPYAIRLVA 432
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V++++G + A+I +AL ++ + + + D
Sbjct: 433 EVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISD---------GTNYTVLTD 483
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T G I +Q + + L AK +++ +
Sbjct: 484 IQGLEDHFGDMDFKVAGTREG-ITALQMDIKIEGITPQILEEALAQAKKARFEILDVLHG 542
Query: 237 VISN 240
I+
Sbjct: 543 AIAE 546
Score = 102 bits (253), Expect = 5e-20, Method: Composition-based stats.
Identities = 41/230 (17%), Positives = 82/230 (35%), Gaps = 26/230 (11%)
Query: 13 EISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKV---PMWIRNTKHGWITAEYGMLPR 68
++ + V+K A GS +V++GD+ +LT A + +K+ + + G P
Sbjct: 14 KLVVETGQVAKQANGSVVVRYGDSTVLTAAVMSKKMSTGDFFPLQVNYEEKMYAAGKFPG 73
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
R GR + R+I R +R + Q+I + A
Sbjct: 74 GFNKR------EGRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSFDENASAPMA 127
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+ G+ +A G +A + + G I++ E ++
Sbjct: 128 AMFGSSLA-------------LSISDIPFNGPIAGVQVAYVDGNFIINPTAQEQEASALE 174
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
T I V+ A+ S++ L + + +LI Q++++
Sbjct: 175 LTVAGTKE-AINMVESGAKE--LSEEIMLEALLKGHEAVCELIAFQEEIV 221
>gi|25010273|ref|NP_734668.1| polynucleotide phosphorylase/polyadenylase [Streptococcus
agalactiae NEM316]
gi|77413798|ref|ZP_00789978.1| polyribonucleotide nucleotidyltransferase [Streptococcus agalactiae
515]
gi|81457782|sp|Q8E7F6|PNP_STRA3 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|23094625|emb|CAD45843.1| polynucleotide phosphorylase, alpha chain [Streptococcus agalactiae
NEM316]
gi|77160160|gb|EAO71291.1| polyribonucleotide nucleotidyltransferase [Streptococcus agalactiae
515]
Length = 709
Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats.
Identities = 42/244 (17%), Positives = 79/244 (32%), Gaps = 18/244 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56
+R GR+ +++R + GS L G T L+ T E ++ +
Sbjct: 317 VRPDGRRVDEIRPLDAVIDFLPQVHGSGLFTRGQTQALSVLTLAPMGEAQIIDGLTPEYK 376
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y S G + A R+ G RAL V+ I +
Sbjct: 377 KRFMHHYNFPQYSVGETGRYGAAGRREIGHGALG----ERALEQVLPSLEEFPYAIRLVA 432
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V++++G + A+I +AL ++ + + + D
Sbjct: 433 EVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISD---------GTNYTVLTD 483
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T G I +Q + + L AK +++ +
Sbjct: 484 IQGLEDHFGDMDFKVAGTREG-ITALQMDIKIEGITPQILEEALAQAKKARFEILDVLHG 542
Query: 237 VISN 240
I+
Sbjct: 543 AIAE 546
Score = 102 bits (253), Expect = 5e-20, Method: Composition-based stats.
Identities = 41/230 (17%), Positives = 82/230 (35%), Gaps = 26/230 (11%)
Query: 13 EISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKV---PMWIRNTKHGWITAEYGMLPR 68
++ + V+K A GS +V++GD+ +LT A + +K+ + + G P
Sbjct: 14 KLVVETGQVAKQANGSVVVRYGDSTVLTAAVMSKKMSTGDFFPLQVNYEEKMYAAGKFPG 73
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
R GR + R+I R +R + Q+I + A
Sbjct: 74 GFNKR------EGRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSFDENASAPMA 127
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+ G+ +A G +A + + G I++ E ++
Sbjct: 128 AMFGSSLA-------------LSISDIPFNGPIAGVQVAYVDGNFIINPTAQEQEASALE 174
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
T I V+ A+ S++ L + + +LI Q++++
Sbjct: 175 LTVAGTKE-AINMVESGAKE--LSEEIMLEALLKGHEAVCELIAFQEEIV 221
>gi|320547742|ref|ZP_08042026.1| polyribonucleotide nucleotidyltransferase [Streptococcus equinus
ATCC 9812]
gi|320447502|gb|EFW88261.1| polyribonucleotide nucleotidyltransferase [Streptococcus equinus
ATCC 9812]
Length = 723
Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats.
Identities = 43/242 (17%), Positives = 79/242 (32%), Gaps = 18/242 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56
+R GR+ +++R + GS L G T L+ T E ++ +
Sbjct: 317 IRPDGRRVDEIRPLDAEIDFLPKVHGSGLFTRGQTQALSVLTLAPMGETQIVDGLGAEYK 376
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y S G + A R+ G RAL V+ I +
Sbjct: 377 KRFLHHYNFPQFSVGETGRYGAPGRREIGHGALG----ERALAQVLPSLEEFPYAIRLVA 432
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V++++G + A+I +AL ++ + + + D
Sbjct: 433 EVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISD---------GSNYTILTD 483
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T G I +Q + + L AK +++ L +
Sbjct: 484 IQGLEDHFGDMDFKVAGTREG-ITALQMDIKIEGITPQILKEALAQAKKARFEILDLIEA 542
Query: 237 VI 238
I
Sbjct: 543 TI 544
Score = 108 bits (269), Expect = 7e-22, Method: Composition-based stats.
Identities = 39/232 (16%), Positives = 83/232 (35%), Gaps = 26/232 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKV---PMWIRNTKHGWITAEYGMLP 67
R + + V+K A G+ ++++G++ +L+ A + +K+ + + G P
Sbjct: 13 RPLVVEIGQVAKQANGAAVIRYGESTVLSAAVMSKKMSTGDFFPLQVNYEEKMYAAGKFP 72
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R GR + R+I R +R + Q+I D
Sbjct: 73 GGFNKR------EGRPTTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDEDASAPM 126
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
AA+ G+ +A G +A + + G I++ + +
Sbjct: 127 AAMFGSSLA-------------LSISDIPFNGPIAGVQVAYIDGEFIINPSEEQKEKSLL 173
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
+ T I V+ A+ S+D L + + +LI Q+++++
Sbjct: 174 ELTVAGTKE-AINMVESGAKE--LSEDIMLEALLKGHEAVQELIAFQEEIVA 222
>gi|301166788|emb|CBW26365.1| putative polyribonucleotide nucleotidyltransferase [Bacteriovorax
marinus SJ]
Length = 709
Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats.
Identities = 46/244 (18%), Positives = 93/244 (38%), Gaps = 18/244 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R++GR ++REI + ++ GS L G+T ++ T+ EK+ IR T+
Sbjct: 323 RIAGRGMTEVREIETEANLLEHVHGSSLFTRGETQVMAAVTIGGKHGEKMEDSIRGTEFQ 382
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G V R+ G RA+++V+ + + C+
Sbjct: 383 KFYLHYNFPPFSVGEARGVRGVGRRELGHGNL----AERAVKAVMPSEEEFAYTTRVVCE 438
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
V++++G + ++ A +AL D + + + + G + +
Sbjct: 439 VMESNGSSSMGSVCSASMALMDAGVPISNPVAGIAMGLITDGERFKVLTD---------I 489
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T G I +Q + +++ + A++ ++
Sbjct: 490 LGDEDHLGDMDFKVAGTVDG-ITAIQMDIKITGLTREIVEKSIEQAREGRLHILGEMAKT 548
Query: 238 ISNE 241
IS +
Sbjct: 549 ISTK 552
Score = 95.7 bits (236), Expect = 5e-18, Method: Composition-based stats.
Identities = 35/225 (15%), Positives = 69/225 (30%), Gaps = 19/225 (8%)
Query: 13 EISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG 71
E+++ ++K A+GS LV T +L T +V +
Sbjct: 16 EVTVETGRLAKQADGSVLVSCNGTQVLVTVCSAHEVKDGQDFFPLLVEYT--EKFYSAGK 73
Query: 72 NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAIT 131
GR R+I R LR + + + + +G A
Sbjct: 74 FVGGFLKREGRPSTSETLNARLIDRPLRPLFPEGYMFDTVVSCNVLSYSDEGDAEVLAGL 133
Query: 132 GAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANF 191
GA A G + G + G +++ + + + D++
Sbjct: 134 GASAA-------------LTISDIPFNGPIGTCKVGRVDGKLVLNPSHSQWAESDLEIAV 180
Query: 192 VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ I+ V+G A+ + + D I + +KL +
Sbjct: 181 A-ASADAILMVEGEAKVVP--EKEVLEAIYFGHDNIKEYVKLMEQ 222
>gi|33861747|ref|NP_893308.1| polynucleotide phosphorylase/polyadenylase [Prochlorococcus marinus
subsp. pastoris str. CCMP1986]
gi|81575818|sp|Q7V0R5|PNP_PROMP RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|33640115|emb|CAE19650.1| polyribonucleotide nucleotidyltransferase [Prochlorococcus marinus
subsp. pastoris str. CCMP1986]
Length = 721
Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats.
Identities = 42/242 (17%), Positives = 89/242 (36%), Gaps = 19/242 (7%)
Query: 2 RLSGRQENQMREISLTRRVSK-YAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
R+ GR +++R+IS + + GS L + G T +L+T TL + + + +
Sbjct: 323 RVDGRDLDEVRKISASAGILPKRVHGSALFQRGLTQVLSTTTLGTPSDAQEMDDLNPSTE 382
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P S G R+ G RA+ V+ + +
Sbjct: 383 KTYLHHYNFPPYSVGETRPMRTPGRREIGHGAL----AERAITPVLPGKETFPYVLRVVS 438
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V+ ++G T ++ G+ ++L D ++ + + + +G + D
Sbjct: 439 EVLSSNGSTSMGSVCGSTLSLLDAGVPLKAPVSGTAMGLIKEGKEV---------RILTD 489
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T+ G I +Q + + A+ +++ ++
Sbjct: 490 IQGIEDFLGDMDFKVAGTEKG-ITALQMDMKITGLPVSVISDAIKKARPARLHILEKMQE 548
Query: 237 VI 238
I
Sbjct: 549 AI 550
Score = 101 bits (250), Expect = 1e-19, Method: Composition-based stats.
Identities = 51/235 (21%), Positives = 89/235 (37%), Gaps = 26/235 (11%)
Query: 10 QMREISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEK---VPMWIRNTKHGWITAEYGM 65
REI LT + A G+ +++ GDT LL TAT K + G
Sbjct: 11 DGREIRLTTGLYAPQAGGAVMIECGDTSLLVTATKTTKKQAADFLPLICDYEEKLYAAGR 70
Query: 66 LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125
+P R GR R+ I R+I R +R + QI+ C +
Sbjct: 71 IPGGFMRR------EGRPPERATLIARLIDRPMRPLFPSWMRDEIQIVASCLSLDERVPA 124
Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185
+TGA +A +AA+ G++ I++ Y E
Sbjct: 125 DVLGVTGASIATLLAEIPFYG-------------PMAAVRVGLIGDDFILNPSYREIEKG 171
Query: 186 DVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
D+D + G IV ++ A + S+ ++ + +++LIK Q++++ +
Sbjct: 172 DLDIVVAGSPEG-IVMIEAGANQ--LSEQDTIEAIDFGYEAVSELIKAQENLLKD 223
>gi|68536209|ref|YP_250914.1| polynucleotide phosphorylase/polyadenylase [Corynebacterium
jeikeium K411]
gi|123650906|sp|Q4JV61|PNP_CORJK RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|68263808|emb|CAI37296.1| polyribonucleotide nucleotidyltransferase [Corynebacterium jeikeium
K411]
Length = 764
Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats.
Identities = 43/242 (17%), Positives = 88/242 (36%), Gaps = 12/242 (4%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKH 56
R+ GR +R++ + ++ A GS L + G+T +L TL+ E+ +
Sbjct: 377 FRIDGRDSTTIRDLGIVVQLIPRAHGSALFERGETQILGVTTLDMLKMEQQIDSLGPETS 436
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P STG + + R+ G RAL V+ I
Sbjct: 437 KRYIHHYNFPPYSTGETGRVGSPKRREIGHGAL----AERALTPVIPSRDDFPYTIRQVS 492
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+ + ++G T ++ + ++L++ ++ + V G + D
Sbjct: 493 EALSSNGSTSMGSVCASTLSLYNAGVPLKAPVAGIAMGLV---TGKVGKAGKDKYVTLTD 549
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED+ D+D T + +Q + D L A+ ++++L ++
Sbjct: 550 ILGAEDAFGDMDFKVAGTPDF-VTALQLDTKLDGIPSDVLAEALQQARTARLEILQLMEE 608
Query: 237 VI 238
I
Sbjct: 609 AI 610
Score = 66.0 bits (159), Expect = 4e-09, Method: Composition-based stats.
Identities = 36/263 (13%), Positives = 69/263 (26%), Gaps = 39/263 (14%)
Query: 12 REISLTRRV-SKYAEGSCLVKFGD-THLLTTATLEEK----VPMWIRNTKHGWITAEYGM 65
R I + ++ A+G+ + T LL+T + + + G
Sbjct: 34 RSIRFETGLLARQADGAVTAYLDEDTMLLSTTAASRQPREGIDFFPLTVDVEERMYSVGR 93
Query: 66 LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125
+P S R GR G + R+I R LR Q+I+ +
Sbjct: 94 IPGSFFRR------EGRPGTDAILAARLIDRPLRPTFVRGLRNEVQVIVTVLSMDPKDRY 147
Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPI----------- 174
AI GA + + +++ V+
Sbjct: 148 DVLAINGASASTQLSGLPVSGPVGGVRMALVVDSDHPEGQWVAFPTREQEEKAIFELVVA 207
Query: 175 -----VDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATF----------SQDHFFAM 219
+ ++ V+ A +++
Sbjct: 208 GRVTEPVKPARGRGRGRGKGAGSSEPNVAVMMVEAGATDNVVERIAEGAPAPTEEVVAQG 267
Query: 220 LNLAKDRIADLIKLQKDVISNEV 242
+ AK IA L + Q ++ V
Sbjct: 268 IEAAKPFIATLCEAQN-ALAKAV 289
>gi|32266093|ref|NP_860125.1| polynucleotide phosphorylase/polyadenylase [Helicobacter hepaticus
ATCC 51449]
gi|81666186|sp|Q7VIL0|PNP_HELHP RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|32262142|gb|AAP77191.1| polyribonucleotide nucleotidyltransferase [Helicobacter hepaticus
ATCC 51449]
Length = 709
Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats.
Identities = 49/243 (20%), Positives = 86/243 (35%), Gaps = 23/243 (9%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW------IRNT 54
+R GR +R IS+ + +A GS L G T L +AT+ +N
Sbjct: 320 IRADGRGLKDVRPISIQTNILPFAHGSVLFTRGQTQALVSATIGGDNDAQNYEMLGSKNA 379
Query: 55 KHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIII 114
Y S G +V R+ G RAL S V + I +
Sbjct: 380 LKKRFLFHYNFPSFSVGEASMIGSVGRRELGHGNL----AKRALHSSVQEQD---KTIRL 432
Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPI 174
++++++G + A++ G +AL C +E + V + AI
Sbjct: 433 VSEILESNGSSSMASVCGGSLALCACGIKVESLIAGVAMGLVTQDEQCAILTD------- 485
Query: 175 VDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
+ ED D+D G I +Q + +Q+ L AK+ ++ +
Sbjct: 486 --ISGLEDHDGDMDFKVAGGYKG-ISAMQMDIKLGGITQEILCQALFQAKEAREQILAIM 542
Query: 235 KDV 237
++
Sbjct: 543 EEA 545
Score = 61.0 bits (146), Expect = 2e-07, Method: Composition-based stats.
Identities = 34/214 (15%), Positives = 69/214 (32%), Gaps = 17/214 (7%)
Query: 20 VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGNRVKREAV 79
V++ A G L + G + LL + +E E +
Sbjct: 20 VAQAANGGILYQNGGSVLLASVCTQENEKYDDEFLPLSVQYIEKTYANNKFPS--GFIKR 77
Query: 80 SGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVALHD 139
G+ R+I R LR + I++ + A+ A AL+
Sbjct: 78 EGKPSEFEILTSRLIDRTLRPLFPKGYTYITSIVVMVLSYDGKSDLQLNALNAAACALYV 137
Query: 140 CLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHI 199
+E +K + G G+ I++ + S +++ +
Sbjct: 138 SDLPLESLQDKAVS---------GVRIGRKDGHFIINPTMEQLSESELNLFVSG-RDDEL 187
Query: 200 VEVQG----SAERA-TFSQDHFFAMLNLAKDRIA 228
+ ++ +A+ A S+++F L AK+ I
Sbjct: 188 LMIEMKSIRTAQGANELSEENFLEALECAKNYIK 221
>gi|297527572|ref|YP_003669596.1| exosome complex exonuclease 1 [Staphylothermus hellenicus DSM
12710]
gi|297256488|gb|ADI32697.1| exosome complex exonuclease 1 [Staphylothermus hellenicus DSM
12710]
Length = 240
Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats.
Identities = 68/243 (27%), Positives = 107/243 (44%), Gaps = 23/243 (9%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKV-PMWIRNTKHGWI 59
+R GR+ +++R I + V K A+GS V++G T ++ +V P + I
Sbjct: 12 LRHDGRRPDELRPIKMDVGVLKNADGSAYVEYGGTKIIAAVYGPREVYPRHLALPDRALI 71
Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119
Y M P ST +R S R E+ ++I AL S+V I + +V+
Sbjct: 72 RCRYHMAPFSTSDRK-----SPAPSRREIELSKVIREALESLVFSELYPRTTIDVFIEVL 126
Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179
QADGGTRT +T A +AL D M D VA ++ G + G ++D+D
Sbjct: 127 QADGGTRTTGLTAASLALADAGIPMRDL-------------VAGVAAGKVDGVLVLDIDE 173
Query: 180 GEDSTIDVDANF-VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
ED + D IV +Q + F+ + F LNLAK + K+ K+ +
Sbjct: 174 VEDEYGEADMPIGYAAGIDEIVLLQLNG---VFTVEEFKEALNLAKRGAEQIYKIMKETL 230
Query: 239 SNE 241
+
Sbjct: 231 HKK 233
>gi|260578909|ref|ZP_05846813.1| guanosine pentaphosphate synthetase/polyribonucleotide
nucleotidyltransferase [Corynebacterium jeikeium ATCC
43734]
gi|258602961|gb|EEW16234.1| guanosine pentaphosphate synthetase/polyribonucleotide
nucleotidyltransferase [Corynebacterium jeikeium ATCC
43734]
Length = 764
Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats.
Identities = 43/242 (17%), Positives = 88/242 (36%), Gaps = 12/242 (4%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKH 56
R+ GR +R++ + ++ A GS L + G+T +L TL+ E+ +
Sbjct: 377 FRIDGRDSTTIRDLGIVVQLIPRAHGSALFERGETQILGVTTLDMLKMEQQIDSLGPETS 436
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P STG + + R+ G RAL V+ I
Sbjct: 437 KRYIHHYNFPPYSTGETGRVGSPKRREIGHGAL----AERALTPVIPSRDDFPYTIRQVS 492
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+ + ++G T ++ + ++L++ ++ + V G + D
Sbjct: 493 EALSSNGSTSMGSVCASTLSLYNAGVPLKAPVAGIAMGLV---TGKVGKAGKDKYVTLTD 549
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED+ D+D T + +Q + D L A+ ++++L ++
Sbjct: 550 ILGAEDAFGDMDFKVAGTPDF-VTALQLDTKLDGIPSDVLAEALQQARTARLEILQLMEE 608
Query: 237 VI 238
I
Sbjct: 609 AI 610
Score = 66.0 bits (159), Expect = 4e-09, Method: Composition-based stats.
Identities = 36/263 (13%), Positives = 69/263 (26%), Gaps = 39/263 (14%)
Query: 12 REISLTRRV-SKYAEGSCLVKFGD-THLLTTATLEEK----VPMWIRNTKHGWITAEYGM 65
R I + ++ A+G+ + T LL+T + + + G
Sbjct: 34 RSIRFETGLLARQADGAVTAYLDEDTMLLSTTAASRQPREGIDFFPLTVDVEERMYSVGR 93
Query: 66 LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125
+P S R GR G + R+I R LR Q+I+ +
Sbjct: 94 IPGSFFRR------EGRPGTDAILAARLIDRPLRPTFVRGLRNEVQVIVTVLSMDPKDRY 147
Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPI----------- 174
AI GA + + +++ V+
Sbjct: 148 DVLAINGASASTQLSGLPVSGPVGGVRMALVVDSDHPEGQWVAFPTREQEEKAIFELVVA 207
Query: 175 -----VDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATF----------SQDHFFAM 219
+ ++ V+ A +++
Sbjct: 208 GRVTEPVKPARGRGRGRGKGAGSSEPNVAVMMVEAGATDNVVERIAEGAPAPTEEVVAQG 267
Query: 220 LNLAKDRIADLIKLQKDVISNEV 242
+ AK IA L + Q ++ V
Sbjct: 268 IEAAKPFIATLCEAQN-ALAKAV 289
>gi|309812542|ref|ZP_07706290.1| guanosine pentaphosphate synthetase I/polyribonucleotide
nucleotidyltransferase [Dermacoccus sp. Ellin185]
gi|308433520|gb|EFP57404.1| guanosine pentaphosphate synthetase I/polyribonucleotide
nucleotidyltransferase [Dermacoccus sp. Ellin185]
Length = 826
Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats.
Identities = 42/242 (17%), Positives = 82/242 (33%), Gaps = 14/242 (5%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
+R+ GR +R +S V GS + + G+T ++ TL E+ +
Sbjct: 341 VRIDGRGLADIRALSAEVEVLPRVHGSAIFERGETQIMGVTTLNMLRMEQQIDSLSPRTR 400
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P STG + + R+ G RAL V+ I
Sbjct: 401 KRYMHHYNFPPFSTGETGRVGSPKRREIGHGAL----AERALMPVLPTREEFPYAIRQVS 456
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+ + ++G T ++ + ++L + + + V +A G + D
Sbjct: 457 EALGSNGSTSMGSVCASTLSLLNAGVPLRAPVAGIAMGLV-----SAEIDGETQYAALTD 511
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED+ D+D T + +Q + L A+D ++ + +
Sbjct: 512 ILGAEDAFGDMDFKVAGTREF-VTAIQLDTKLDGIPAQVLAGALTQARDARLHILDVMNE 570
Query: 237 VI 238
I
Sbjct: 571 AI 572
Score = 80.7 bits (197), Expect = 2e-13, Method: Composition-based stats.
Identities = 41/244 (16%), Positives = 74/244 (30%), Gaps = 38/244 (15%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGD-THLLTTATLEEKVPMWIRNT----KHGWITAEYGM 65
R + ++K A G+ + D T LL+T T ++ + G
Sbjct: 21 RTVRFETGRLAKQANGAVMAYLDDDTCLLSTTTASKQPKEHFDFFPLTVDVEERSYAAGK 80
Query: 66 LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125
+P S R GR + R+I R LR Q++I D
Sbjct: 81 IPGSFFRR------EGRPSTDAILTCRLIDRPLRPAFKKGLRNEVQVVITVLAQNPDVQY 134
Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185
AI GA + G + + ++ G + ++ +
Sbjct: 135 DVLAINGASASTQ-------------ISGLPFTGPIGGVRISLIDGQWVAFPNFSDIERS 181
Query: 186 DVDANFVM---TDSGHIVEVQGSAERATF----------SQDHFFAMLNLAKDRIADLIK 232
D D I+ V+ + +T+ +++ L AK I L +
Sbjct: 182 AFDMVVAGRIVGDDVAIMMVEAESTESTWNLVKNGTQAPTEEVVAEGLEAAKKFIRVLCE 241
Query: 233 LQKD 236
Q +
Sbjct: 242 AQME 245
>gi|157413740|ref|YP_001484606.1| polynucleotide phosphorylase/polyadenylase [Prochlorococcus marinus
str. MIT 9215]
gi|187610311|sp|A8G5Y9|PNP_PROM2 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|157388315|gb|ABV51020.1| polyribonucleotide nucleotidyltransferase [Prochlorococcus marinus
str. MIT 9215]
Length = 721
Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats.
Identities = 41/242 (16%), Positives = 89/242 (36%), Gaps = 19/242 (7%)
Query: 2 RLSGRQENQMREISLTRRVSK-YAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
R+ GR+ +++R+I+ + + GS L + G T +L+T TL + + + +
Sbjct: 323 RVDGRELDEVRKITASAGILPKRVHGSALFQRGLTQVLSTTTLGTPSDAQEMDDLNPSTE 382
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P S G R+ G RA+ V+ + +
Sbjct: 383 KTYLHHYNFPPYSVGETRPMRTPGRREIGHGAL----AERAIIPVLPGKETFPYVLRVVS 438
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V+ ++G T ++ G+ ++L D ++ + + +G + D
Sbjct: 439 EVLSSNGSTSMGSVCGSTLSLLDAGVPLKAPVGGTAMGLIKEGKDV---------RILTD 489
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T+ G I +Q + + A+ +++ ++
Sbjct: 490 IQGIEDFLGDMDFKVAGTNKG-ITALQMDMKITGLPVSIISDAIKKARPARLHILEKMQE 548
Query: 237 VI 238
I
Sbjct: 549 AI 550
Score = 102 bits (254), Expect = 4e-20, Method: Composition-based stats.
Identities = 55/235 (23%), Positives = 90/235 (38%), Gaps = 26/235 (11%)
Query: 10 QMREISLTRR-VSKYAEGSCLVKFGDTHLLTTATLE---EKVPMWIRNTKHGWITAEYGM 65
REI LT + A GS +++ GDT LL TAT E + G
Sbjct: 11 DGREIRLTTGLYAPQASGSVMIECGDTSLLVTATKTTKKEASDFLPLICDYEEKLYAAGR 70
Query: 66 LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125
+P R GR R+ I R+I R +R + QI+ C +
Sbjct: 71 IPGGFMRR------EGRPPERATLISRLIDRPMRPLFPTWMRDEIQIVASCLSLDERVPA 124
Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185
A+TGA +A G +AA+ G++ I++ Y E
Sbjct: 125 DVLAVTGASIAT-------------LLGEIPFYGPMAAVRVGLIGDDFILNPSYREIEKG 171
Query: 186 DVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
D+D + G IV ++ A + S+ ++ + + +LIK Q+D++ +
Sbjct: 172 DLDIVVAGSPDG-IVMIEAGANQ--LSEQDTIEAIDFGYEAVTELIKSQEDLLKD 223
>gi|78776629|ref|YP_392944.1| polynucleotide phosphorylase/polyadenylase [Sulfurimonas
denitrificans DSM 1251]
gi|123754746|sp|Q30TH2|PNP_SULDN RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|78497169|gb|ABB43709.1| Polyribonucleotide nucleotidyltransferase [Sulfurimonas
denitrificans DSM 1251]
Length = 721
Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats.
Identities = 50/243 (20%), Positives = 89/243 (36%), Gaps = 23/243 (9%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWI------RNT 54
+R GR N++R IS++ V A SCL G T L T+ + T
Sbjct: 340 VRADGRALNEIRPISISTNVLPSAHASCLFTRGQTQALVVLTMGGPKDAQMFENLTDEGT 399
Query: 55 KHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIII 114
++ Y S G R+ G RAL +V+L + + +
Sbjct: 400 QNENFMVHYNFPGFSVGEASPIMGTKRRELGHGNL----AKRALEPIVNLE---GQTVRL 452
Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPI 174
++++++G + A + G ++AL D + V +G AI ++
Sbjct: 453 VSEILESNGSSSMATVCGGYMALRAADIETSDTIAGIAMGMVSEGDKYAILSDIM----- 507
Query: 175 VDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
ED D+D + G I +Q + S + L AK+ A +I +
Sbjct: 508 ----GLEDHDGDLDFKVTGSKDG-ITAMQMDIKLGGISLNILKEALYQAKEGRAHIINIM 562
Query: 235 KDV 237
++
Sbjct: 563 QEA 565
Score = 62.2 bits (149), Expect = 6e-08, Method: Composition-based stats.
Identities = 32/194 (16%), Positives = 64/194 (32%), Gaps = 24/194 (12%)
Query: 20 VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----HGWITAEYGMLPRSTGNRVK 75
V+K A G+ +K G+T +L T ++E + + G +P R
Sbjct: 21 VAKQANGAAWLKSGNTVILATVVIDETEIVKDDFLPLTVQYIEKAYAAGKIPGGFFKR-- 78
Query: 76 REAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWV 135
+ R++ R+LR + QI I + + + A+ A
Sbjct: 79 ----ETKASDFETLTSRIVDRSLRPLFPKGFGHPTQITIMVFSVDKESDLQVLALNAASA 134
Query: 136 ALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTD 195
AL+ + V+AI + G I++ E +D T
Sbjct: 135 ALY-------------VSDIDINKSVSAIRVAKIDGELILNPTLSELDKSTLDLYLSGTK 181
Query: 196 SGHIVEVQGSAERA 209
++ ++ ++
Sbjct: 182 ED-LLMIEMRSKGG 194
>gi|156543904|ref|XP_001607068.1| PREDICTED: similar to polyribonucleotide nucleotidyltransferase
[Nasonia vitripennis]
Length = 765
Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats.
Identities = 48/247 (19%), Positives = 89/247 (36%), Gaps = 17/247 (6%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE--------EKVPMWIRN 53
R GR+ +R I+ + K GS L + G T +L T TL+ + + M
Sbjct: 356 RCDGRKYTDLRNITCQVDLFKPLHGSALFQRGQTQVLCTVTLDSPDSALKMDTMSMLSSG 415
Query: 54 TKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQII 113
K Y P +T + V R+ G R LR+++ I
Sbjct: 416 VKEKNFFLHYEFPPYATNETGRTGPVGRREMGHGAL----AERGLRAILPKEYPF--TIR 469
Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP 173
+ +V++++G + A++ G +AL D + + + V K + +
Sbjct: 470 LTSEVLESNGSSSMASVCGGSLALMDAGVPIAAPAAGVAIGLVTKYDKD--TKHIKDYKI 527
Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
+ D+ ED D+D T G + +Q + L A + ++ +
Sbjct: 528 LTDILGIEDYLGDMDFKIAGTKKG-VTALQADIKIPGLPLKIVMESLEQATEAKTQILNI 586
Query: 234 QKDVISN 240
+ IS
Sbjct: 587 MNEAISK 593
Score = 75.3 bits (183), Expect = 6e-12, Method: Composition-based stats.
Identities = 32/228 (14%), Positives = 71/228 (31%), Gaps = 26/228 (11%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKV----PMWIRNTKHGWITAEYGMLPR 68
+ L+ ++ A+G + GDT ++ T + + + A G +P
Sbjct: 53 MILSTGKYARLADGCAVATLGDTSVMVTTVSKSQSSGVNSFLPLVVDYRQKAAAAGRIPT 112
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
+ R R+I R+LR + Q++ + + +
Sbjct: 113 NFFRRELGH------TEHEILTSRLIDRSLRPLFPQKYNYETQVVCNMLALDGNNDPDVL 166
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
+I GA A G V A+ G++ +++ E ++
Sbjct: 167 SINGASAA-------------LAVSDIPWNGPVGAVRVGLIDNEVLINPTRREIQQSSLN 213
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
T +V ++GSA+ + L +++ +
Sbjct: 214 LIVTATQQNLVVMLEGSADNILVPE--LRKALKAGVKECQIIVQSIQK 259
>gi|327312938|ref|YP_004328375.1| polyribonucleotide nucleotidyltransferase [Prevotella denticola
F0289]
gi|326944531|gb|AEA20416.1| polyribonucleotide nucleotidyltransferase [Prevotella denticola
F0289]
Length = 751
Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats.
Identities = 48/243 (19%), Positives = 86/243 (35%), Gaps = 18/243 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +++R I GS L + G+T L+T TL +EK+ + +
Sbjct: 325 RMDGRATDEIRPIWCEVDTLPMPHGSALFQRGETMSLSTCTLGTKMDEKMVDNVLEKSYQ 384
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P TG + V R+ G RAL+ + + +
Sbjct: 385 RFLLHYNFPPFCTGEAKAQRGVGRREIGHGHL----AWRALKGQIPAD--FPYTVRLVSQ 438
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+++++G + A + +AL D M+ + + + G + D+
Sbjct: 439 ILESNGSSSMATVCAGTLALMDAGVPMKKPVSGIAMGLIKN-------PGEDKYAVLSDI 491
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T G + Q + S + L AK ++ L D
Sbjct: 492 LGDEDHLGDMDFKTTGTRDG-LTATQMDIKCDGLSFEILEKALMQAKAGREHILNLLTDT 550
Query: 238 ISN 240
I+
Sbjct: 551 IAE 553
Score = 105 bits (262), Expect = 5e-21, Method: Composition-based stats.
Identities = 35/235 (14%), Positives = 73/235 (31%), Gaps = 25/235 (10%)
Query: 3 LSGRQENQMREISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
GR IS+ V+K A+G+ +++ G+T LL T ++
Sbjct: 11 PDGRT------ISIETGKVAKQADGAAVLRMGNTVLLATVCAAKEAVPGTDFMPLQVDYR 64
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
E G+ R++ R LR +
Sbjct: 65 EQYSAAGRYP--GGFTKREGKANDDEILTSRLVDRVLRPLFPSDYHCEVY---------- 112
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
+ ++ V D L + ++ + + + G ++D + +
Sbjct: 113 ---VQVMLLSADSVDQPDALAGFAASAALAASDIPIEHPTSEVRVARINGEYVIDPTFEQ 169
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
D+D T +I+ V+ E S+ L A + I + ++Q++
Sbjct: 170 MKEADMDLMVGATKD-NIMMVE--GEMDEVSEQDLIGALKAAHEAIKPMCEMQEE 221
>gi|172035539|ref|YP_001802040.1| polynucleotide phosphorylase/polyadenylase [Cyanothece sp. ATCC
51142]
gi|254782715|sp|B1WQ52|PNP_CYAA5 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|171696993|gb|ACB49974.1| polyribonucleotide nucleotidyltransferase [Cyanothece sp. ATCC
51142]
Length = 715
Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats.
Identities = 46/246 (18%), Positives = 86/246 (34%), Gaps = 20/246 (8%)
Query: 1 MRLSGRQENQMREISLTRRVS-KYAEGSCLVKFGDTHLLTTATLE-----EKVPMWIRNT 54
+R+ GR+ +++R IS + GS L G T + + ATL + + +
Sbjct: 323 IRVDGRKLDEVRPISCRVGLLPPRVHGSALFTRGLTQVFSLATLGTPGDAQDLGDDLHPE 382
Query: 55 KHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIII 114
Y P S G + R+ G RA+ V+ + +
Sbjct: 383 DEKRYLHHYNFPPFSVGETKPLRSPGRREIGHGAL----AERAILPVLPPQDEFPYVVRV 438
Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPI 174
+V+ ++G T ++ G+ +AL D + + + + +G +
Sbjct: 439 VSEVVSSNGSTSMGSVCGSTLALMDAGVPIIKPVSGAAMGLIREGKEV---------RIL 489
Query: 175 VDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
D+ ED D+D TD+G I +Q + S D + A ++
Sbjct: 490 TDIQGIEDFLGDMDFKVAGTDTG-ITALQMDMKITGLSMDVVAKAIEQALPARLHILDKM 548
Query: 235 KDVISN 240
VI
Sbjct: 549 LAVIDQ 554
Score = 81.4 bits (199), Expect = 1e-13, Method: Composition-based stats.
Identities = 46/235 (19%), Positives = 83/235 (35%), Gaps = 26/235 (11%)
Query: 10 QMREISLTRR-VSKYAEGSCLVKFGD---THLLTTATLEEKVPMWIRNTKHGWITAEYGM 65
R+I L ++ A G+ L++ GD TT E + + G
Sbjct: 11 DGRDIRLKLGLLAPQAGGAVLIQSGDTAVLVTATTTKGREGIDFLPLTVDYEERLYAAGR 70
Query: 66 LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125
+P R GR R+ I R+I R LR + QII + +
Sbjct: 71 IPGGFLRR------EGRPPERAILISRLIDRPLRPLFPNWWRNDIQIIATTLSMDEEVPP 124
Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185
A+TG+ +A+ +AA+ G++ I++ Y E
Sbjct: 125 DVLAVTGSSIAVIQAQIPFYG-------------PMAAVRVGLIGDDFIINPTYREVENG 171
Query: 186 DVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
D+D + G +V V+ A + + ++ + + DLI Q +++
Sbjct: 172 DLDLVVAGSPDG-VVMVEAGANQ--LPEQDIIEAIDFGYEAVRDLIGAQYEIMEE 223
>gi|315606750|ref|ZP_07881760.1| polyribonucleotide nucleotidyltransferase [Prevotella buccae ATCC
33574]
gi|315251605|gb|EFU31584.1| polyribonucleotide nucleotidyltransferase [Prevotella buccae ATCC
33574]
Length = 780
Score = 139 bits (351), Expect = 3e-31, Method: Composition-based stats.
Identities = 48/244 (19%), Positives = 85/244 (34%), Gaps = 18/244 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56
+RL GR ++R I GS L + G+T L+T T L+EK+ + +
Sbjct: 323 LRLDGRATTEIRPIWSEVSPLPMPHGSALFQRGETMSLSTCTLGTKLDEKLVDDVLMKGY 382
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P STG + V R+ G R L+ + + +
Sbjct: 383 QRFLLHYNFPPFSTGEAKAQRGVGRREVGHGHL----AWRGLKDQIPAD--FPYTVRLVS 436
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+++++G + A + +AL D M+ + + + G + D
Sbjct: 437 QILESNGSSSMATVCAGTLALMDAGVPMKKPVSGIAMGLIKN-------PGEDKYAILSD 489
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T G + Q + S + L AK ++ +
Sbjct: 490 ILGDEDHLGDMDFKTTGTKDG-LTATQMDIKCDGLSFEILEKALMQAKAGREHILNKMME 548
Query: 237 VISN 240
IS
Sbjct: 549 TISE 552
Score = 103 bits (257), Expect = 2e-20, Method: Composition-based stats.
Identities = 37/241 (15%), Positives = 78/241 (32%), Gaps = 26/241 (10%)
Query: 3 LSGRQENQMREISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
GR I++ V+K A+G+ +++ G+T LL T +
Sbjct: 11 PDGRT------ITIETGKVAKQADGAAVLRMGNTVLLATVCAAKDAVPGTDFMPLQVDYR 64
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
E G+ R++ RALR + + + +
Sbjct: 65 EQYSAAGRFP--GGFTKREGKANDDEILTSRLVDRALRPLFPSNYHAEVYVQVMLLSADG 122
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
A A A+ ++ + + G +++ + +
Sbjct: 123 VDQPDALAGFAASAAMAC-------------SDIPFDYPISEVRVARVGGEYVINPTFQQ 169
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
+ D+D T +I+ V+ E S+ L +A + I + +LQ++ +S E
Sbjct: 170 MADADMDLMVGATKD-NIMMVE--GEMKEVSEQDLIGALKVAAEAIKPMCELQEE-LSKE 225
Query: 242 V 242
+
Sbjct: 226 L 226
>gi|288925349|ref|ZP_06419283.1| polyribonucleotide nucleotidyltransferase [Prevotella buccae D17]
gi|288337820|gb|EFC76172.1| polyribonucleotide nucleotidyltransferase [Prevotella buccae D17]
Length = 746
Score = 139 bits (351), Expect = 3e-31, Method: Composition-based stats.
Identities = 48/244 (19%), Positives = 85/244 (34%), Gaps = 18/244 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56
+RL GR ++R I GS L + G+T L+T T L+EK+ + +
Sbjct: 289 LRLDGRATTEIRPIWSEVSPLPMPHGSALFQRGETMSLSTCTLGTKLDEKLVDDVLMKGY 348
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P STG + V R+ G R L+ + + +
Sbjct: 349 QRFLLHYNFPPFSTGEAKAQRGVGRREVGHGHL----AWRGLKDQIPAD--FPYTVRLVS 402
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+++++G + A + +AL D M+ + + + G + D
Sbjct: 403 QILESNGSSSMATVCAGTLALMDAGVPMKKPVSGIAMGLIKN-------PGEDKYAILSD 455
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T G + Q + S + L AK ++ +
Sbjct: 456 ILGDEDHLGDMDFKTTGTKDG-LTATQMDIKCDGLSFEILEKALMQAKAGREHILNKMME 514
Query: 237 VISN 240
IS
Sbjct: 515 TISE 518
Score = 75.3 bits (183), Expect = 7e-12, Method: Composition-based stats.
Identities = 30/211 (14%), Positives = 63/211 (29%), Gaps = 19/211 (9%)
Query: 32 FGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQ 91
G+T LL T + E G+
Sbjct: 1 MGNTVLLATVCAAKDAVPGTDFMPLQVDYREQYSAAGRFP--GGFTKREGKANDDEILTS 58
Query: 92 RMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKF 151
R++ RALR + + + + A A A+
Sbjct: 59 RLVDRALRPLFPSNYHAEVYVQVMLLSADGVDQPDALAGFAASAAMAC------------ 106
Query: 152 QLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATF 211
++ + + G +++ + + + D+D T +I+ V+ E
Sbjct: 107 -SDIPFDYPISEVRVARVGGEYVINPTFQQMADADMDLMVGATKD-NIMMVE--GEMKEV 162
Query: 212 SQDHFFAMLNLAKDRIADLIKLQKDVISNEV 242
S+ L +A + I + +LQ++ +S E+
Sbjct: 163 SEQDLIGALKVAAEAIKPMCELQEE-LSKEL 192
>gi|309799898|ref|ZP_07694103.1| polyribonucleotide nucleotidyltransferase [Streptococcus infantis
SK1302]
gi|308116488|gb|EFO53959.1| polyribonucleotide nucleotidyltransferase [Streptococcus infantis
SK1302]
Length = 740
Score = 139 bits (351), Expect = 3e-31, Method: Composition-based stats.
Identities = 42/244 (17%), Positives = 80/244 (32%), Gaps = 18/244 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56
+R GR+ +++R + GS L G T L+ T E ++ +
Sbjct: 317 VRPDGRKVDEIRPLDAVVDFLPRVHGSGLFTRGQTQALSILTLAPMGETQIIDGLDPEYK 376
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y S G + A R+ G RAL V+ I +
Sbjct: 377 KRFMHHYNFPQYSVGETGRYGAPGRREIGHGALG----ERALAQVLPSLEEFPYAIRLVA 432
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V++++G + A+I +AL ++ + + + D
Sbjct: 433 EVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISD---------GNNYTVLTD 483
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T G I +Q + + + L AK +++ + +
Sbjct: 484 IQGLEDHFGDMDFKVAGTRDG-ITALQMDIKIQGITAEILTEALAQAKKARFEILDVIEA 542
Query: 237 VISN 240
I
Sbjct: 543 TIPE 546
Score = 112 bits (280), Expect = 4e-23, Method: Composition-based stats.
Identities = 42/232 (18%), Positives = 85/232 (36%), Gaps = 26/232 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKV---PMWIRNTKHGWITAEYGMLP 67
RE+ + V+K A GS +V++G++ +LT A + +K+ + + G P
Sbjct: 13 RELIVETGQVAKQANGSVVVRYGESTVLTAAVMSKKMATGDFFPLQVNYEEKMYAAGKFP 72
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R GR + R+I R +R + Q+I +
Sbjct: 73 GGFMKR------EGRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDENASAPM 126
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
AA+ G+ +A G +A + G + G I++ + +
Sbjct: 127 AAMFGSSLA-------------LSISDIPFDGPIAGVQVGYVDGQIIINPTQEQAEQSLL 173
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
+ T I V+ A+ S++ L + + +LI Q+++++
Sbjct: 174 ELTVAGTKH-AINMVESGAKE--LSEEIMLEALLKGHEAVKELIAFQEEIVA 222
>gi|145224603|ref|YP_001135281.1| polynucleotide phosphorylase/polyadenylase [Mycobacterium gilvum
PYR-GCK]
gi|315444934|ref|YP_004077813.1| guanosine pentaphosphate synthetase I/polynucleotide phosphorylase
[Mycobacterium sp. Spyr1]
gi|189037310|sp|A4TCH6|PNP_MYCGI RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|145217089|gb|ABP46493.1| Polyribonucleotide nucleotidyltransferase [Mycobacterium gilvum
PYR-GCK]
gi|315263237|gb|ADT99978.1| guanosine pentaphosphate synthetase I/polynucleotide phosphorylase
[Mycobacterium sp. Spyr1]
Length = 756
Score = 139 bits (351), Expect = 3e-31, Method: Composition-based stats.
Identities = 42/244 (17%), Positives = 81/244 (33%), Gaps = 9/244 (3%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKH 56
R+ GR +R +S V A GS L + G+T ++ TL+ + +
Sbjct: 346 FRIDGRGVTDIRALSAEVAVIPRAHGSALFERGETQIMGVTTLDMVKMAQQIDSLGPETS 405
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P STG + + R+ G RAL V+ I
Sbjct: 406 KRYMHHYNFPPYSTGETGRVGSPKRREIGHGAL----AERALMPVLPSVEEFPYAIRQVS 461
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+ + ++G T ++ + ++L + ++ + V + D
Sbjct: 462 EALSSNGSTSMGSVCASTLSLLNAGVPLKAPVAGIAMGLVSDDVEVEGGGVERRFVTLTD 521
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED+ D+D T + +Q + L AKD ++++ +
Sbjct: 522 ILGAEDAFGDMDFKCAGTKDF-VTALQLDTKLDGIPSQVLAGALAQAKDARITILEVMAE 580
Query: 237 VISN 240
I
Sbjct: 581 AIDE 584
Score = 69.1 bits (167), Expect = 6e-10, Method: Composition-based stats.
Identities = 34/232 (14%), Positives = 64/232 (27%), Gaps = 18/232 (7%)
Query: 12 REISLTRR-VSKYAEGSCLVKF-GDTHLLTTATLEEKVPMWIRNT----KHGWITAEYGM 65
R I +++ A G+ + +T LL+ T ++ G
Sbjct: 25 RTIRFETGRLARQAAGAVVAYLDDETMLLSATTASKQPKEHFDFFPLTIDVEERMYAAGR 84
Query: 66 LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125
+P S R GR + R+I R LR Q+++ +
Sbjct: 85 IPGSFFRR------EGRPSTDAILTCRLIDRPLRPTFISGLRNEIQVVVTVLSLDPKDLY 138
Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL-----DYG 180
AI A + +++ + VA + L +
Sbjct: 139 DVLAINAASASTQISGIPFNGPVGGVRVALIDGQWVAFPTVEQLEKAVFDMVVAGRKVGD 198
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
+ + ++E+ A ++ L AK IA L
Sbjct: 199 AGNEDVAIMMVEAEATDKVIELVAGGAGAP-TEAVVAEGLEAAKPFIAALCD 249
>gi|325859693|ref|ZP_08172823.1| polyribonucleotide nucleotidyltransferase [Prevotella denticola
CRIS 18C-A]
gi|325482619|gb|EGC85622.1| polyribonucleotide nucleotidyltransferase [Prevotella denticola
CRIS 18C-A]
Length = 742
Score = 139 bits (350), Expect = 3e-31, Method: Composition-based stats.
Identities = 48/243 (19%), Positives = 86/243 (35%), Gaps = 18/243 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +++R I GS L + G+T L+T TL +EK+ + +
Sbjct: 316 RMDGRATDEIRPIWCEVDTLPMPHGSALFQRGETMSLSTCTLGTKMDEKMVDNVLEKSYQ 375
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P TG + V R+ G RAL+ + + +
Sbjct: 376 RFLLHYNFPPFCTGEAKAQRGVGRREIGHGHL----AWRALKGQIPAD--FPYTVRLVSQ 429
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+++++G + A + +AL D M+ + + + G + D+
Sbjct: 430 ILESNGSSSMATVCAGTLALMDAGVPMKKPVSGIAMGLIKN-------PGEDKYAVLSDI 482
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T G + Q + S + L AK ++ L D
Sbjct: 483 LGDEDHLGDMDFKTTGTRDG-LTATQMDIKCDGLSFEILEKALMQAKAGREHILNLLTDT 541
Query: 238 ISN 240
I+
Sbjct: 542 IAE 544
Score = 105 bits (262), Expect = 5e-21, Method: Composition-based stats.
Identities = 35/235 (14%), Positives = 73/235 (31%), Gaps = 25/235 (10%)
Query: 3 LSGRQENQMREISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
GR IS+ V+K A+G+ +++ G+T LL T ++
Sbjct: 2 PDGRT------ISIETGKVAKQADGAAVLRMGNTVLLATVCAAKEAVPGTDFMPLQVDYR 55
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
E G+ R++ R LR +
Sbjct: 56 EQYSAAGRYP--GGFTKREGKANDDEILTSRLVDRVLRPLFPSDYHCEVY---------- 103
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
+ ++ V D L + ++ + + + G ++D + +
Sbjct: 104 ---VQVMLLSADSVDQPDALAGFAASAALAASDIPIEHPTSEVRVARINGEYVIDPTFEQ 160
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
D+D T +I+ V+ E S+ L A + I + ++Q++
Sbjct: 161 MKEADMDLMVGATKD-NIMMVE--GEMDEVSEQDLIGALKAAHEAIKPMCEMQEE 212
>gi|992693|gb|AAB01514.1| RNase PH [Caulobacter crescentus CB15]
Length = 238
Score = 139 bits (350), Expect = 3e-31, Method: Composition-based stats.
Identities = 117/229 (51%), Positives = 160/229 (69%), Gaps = 3/229 (1%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR S R +Q+R ++L V++YA + L+ FG T +L TAT+EE VP W+RN GW+T
Sbjct: 1 MRPSERAPDQLRAVTLETGVNRYAR-ALLIGFGHTKVLVTATVEENVPGWMRNKGAGWVT 59
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPR+T R +REA +G+Q GR+QEIQR+IGR+LR+VVDL ALG RQI +DCDV+Q
Sbjct: 60 AEYGMLPRATHTRGRREAAAGKQTGRTQEIQRLIGRSLRAVVDLKALGERQITLDCDVVQ 119
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTAAITGAWVAL +++ D + + G VAA+SCG+ G P++DLDY
Sbjct: 120 ADGGTRTAAITGAWVALRLATKYLLDE--GVLKTDPILGQVAAVSCGVFNGVPVLDLDYE 177
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIAD 229
EDS + D+NFV+T G IVE+Q + E F++ F ++ ++ +
Sbjct: 178 EDSNAEADSNFVLTGVGDIVEIQATGETRGFTRAEFESLYGAGREGVQR 226
>gi|113475234|ref|YP_721295.1| polynucleotide phosphorylase/polyadenylase [Trichodesmium
erythraeum IMS101]
gi|122965040|sp|Q115K2|PNP_TRIEI RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|110166282|gb|ABG50822.1| Polyribonucleotide nucleotidyltransferase [Trichodesmium erythraeum
IMS101]
Length = 717
Score = 139 bits (350), Expect = 3e-31, Method: Composition-based stats.
Identities = 44/244 (18%), Positives = 86/244 (35%), Gaps = 20/244 (8%)
Query: 1 MRLSGRQENQMREISLTRRVSK-YAEGSCLVKFGDTHLLTTATLE-----EKVPMWIRNT 54
+R+ GR+ +++R +S V GS L G T +++ TL +++ +
Sbjct: 322 IRVDGRKLDEVRPVSCRVGVLPSRVHGSSLFNRGLTQVMSAVTLGTPGDAQELADDLHPQ 381
Query: 55 KHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIII 114
Y P S G R+ G RAL V+ S + I +
Sbjct: 382 DEKRYLHHYNFPPFSVGETKPLRQPGRREIGHGAL----AERALIPVIPKSDIFPYVIRV 437
Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPI 174
+V+ ++G T ++ + + L D + + + + + +
Sbjct: 438 VSEVLSSNGSTSMGSVCASTLGLMDAGVPIVKPVSGAAMGLIKEDEEV---------RIL 488
Query: 175 VDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
D+ ED D+D TDSG I +Q + + ++ AK ++
Sbjct: 489 TDIQGIEDFLGDMDFKVAGTDSG-ITALQMDMKITGLPIEVIADAIHQAKPARIHILDKM 547
Query: 235 KDVI 238
V+
Sbjct: 548 LSVL 551
Score = 102 bits (253), Expect = 5e-20, Method: Composition-based stats.
Identities = 47/235 (20%), Positives = 88/235 (37%), Gaps = 26/235 (11%)
Query: 10 QMREISLTRR-VSKYAEGSCLVKFGDTHLLTTAT---LEEKVPMWIRNTKHGWITAEYGM 65
R+I L + A G+ +++ GDT +L TAT E + + G
Sbjct: 11 DGRDIRLKVGLFAPQAGGAVMIESGDTAVLVTATTAKGREGIDFLPLLVDYEERLYAGGK 70
Query: 66 LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125
+P R GR + R+I R LR + QI+ + +
Sbjct: 71 IPGGFLRR------EGRPPEKVTLTSRLIDRPLRPLFPSWLRDDIQIVATTLSMDEEVPP 124
Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185
A+TG+ VA+ G +AA+ G++ I++ Y E
Sbjct: 125 DVLAVTGSSVAVLLA-------------KLPFYGPMAAVRVGLVGDDFIINPTYREVKNG 171
Query: 186 DVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
D+D + G ++ V+ A + + ++ + + DLI+ Q+++I+
Sbjct: 172 DLDLVVAGSPQG-VIMVEAGANQ--LPEQDIIEAIDFGYEAVCDLIQAQREIIAE 223
>gi|300727487|ref|ZP_07060878.1| polyribonucleotide nucleotidyltransferase [Prevotella bryantii B14]
gi|299775190|gb|EFI71791.1| polyribonucleotide nucleotidyltransferase [Prevotella bryantii B14]
Length = 739
Score = 139 bits (350), Expect = 3e-31, Method: Composition-based stats.
Identities = 49/244 (20%), Positives = 84/244 (34%), Gaps = 18/244 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
+RL GR +R I GS + + G+T L+T TL +EK+ + N +
Sbjct: 314 LRLDGRATTDIRPIWCEVSPLPMPHGSAIFQRGETMSLSTCTLGTKMDEKLVDGVLNRSY 373
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P STG + V R+ G RAL+ + + +
Sbjct: 374 QRFLLHYNFPPFSTGEAKAQRGVGRREIGHGHL----AWRALKDQIPADY--PYTVRLVS 427
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
V++++G + A +AL D ++ + + + G + D
Sbjct: 428 QVLESNGSSSMATTCAGTLALMDAGVPIKKPVSGIAMGLIKN-------PGEDKYAILSD 480
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T G + Q + S + L AK ++
Sbjct: 481 ILGDEDHLGDMDFKTTGTRDG-LTATQMDIKCDGLSFEILEKALMQAKAGREHILNEMMK 539
Query: 237 VISN 240
IS
Sbjct: 540 TISE 543
Score = 107 bits (267), Expect = 1e-21, Method: Composition-based stats.
Identities = 37/241 (15%), Positives = 74/241 (30%), Gaps = 26/241 (10%)
Query: 3 LSGRQENQMREISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
GR I++ V+K A+GS +++ G+T LL T ++
Sbjct: 2 PDGRT------ITIETGKVAKQADGSAVLRLGNTVLLATVCAAKEAVPGTDFMPLQVDYR 55
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
E G+ R++ RALR + + +
Sbjct: 56 EQYSAAGRFP--GGFTKREGKASDEEVLTSRLVDRALRPLFPSDYHCEVYVQVMLLSADG 113
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
A A A+ ++ + + G +++ + +
Sbjct: 114 VDQPDALAGFAASAAMAC-------------SDIPFDYTISEVRVARINGEFVINPTFQQ 160
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
D+D T +I+ V+ E S+ L A + I + LQ + ++ E
Sbjct: 161 MEEADMDLMVGATKD-NIMMVE--GEMKEVSELDLINALKAAHEAIKPMCDLQDE-LAKE 216
Query: 242 V 242
+
Sbjct: 217 L 217
>gi|113954008|ref|YP_731290.1| polynucleotide phosphorylase/polyadenylase [Synechococcus sp.
CC9311]
gi|123327683|sp|Q0I8D2|PNP_SYNS3 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|113881359|gb|ABI46317.1| polyribonucleotide nucleotidyltransferase [Synechococcus sp.
CC9311]
Length = 721
Score = 139 bits (350), Expect = 3e-31, Method: Composition-based stats.
Identities = 47/244 (19%), Positives = 90/244 (36%), Gaps = 19/244 (7%)
Query: 2 RLSGRQENQMREISLTRRVSK-YAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
R+ GR +Q+R IS V GS L + G T +L+TATL + + + +
Sbjct: 323 RVDGRNLDQVRPISAAAGVLPKRVHGSGLFQRGLTQVLSTATLGTPSDAQEMDDLNPSNE 382
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y S G + R+ G RA+ V+ + +
Sbjct: 383 KTYLHHYNFPAYSVGETRPMRSPGRREIGHGAL----AERAIVPVLPAKDTFPYVVRVVS 438
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V+ ++G T ++ G+ +AL D ++ + + + +G + D
Sbjct: 439 EVLSSNGSTSMGSVCGSTLALMDAGVPLKSPVSGAAMGLIKEGDEV---------KILTD 489
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED +D+D TD G I +Q + +N A+ +++ +
Sbjct: 490 IQGIEDFLVDMDFKVAGTDKG-ITALQMDMKITGLPVSIVADAVNQARPARLHILEKMME 548
Query: 237 VISN 240
I +
Sbjct: 549 AIES 552
Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats.
Identities = 51/235 (21%), Positives = 88/235 (37%), Gaps = 26/235 (11%)
Query: 10 QMREISLTRR-VSKYAEGSCLVKFGDTHLLTTAT---LEEKVPMWIRNTKHGWITAEYGM 65
REI LT + A GS +++ GDT +L TAT + + + G
Sbjct: 11 DGREIRLTTGRYAPQAGGSVMIECGDTSVLVTATRSKGRDGIDFLPLICDYEERLYAAGR 70
Query: 66 LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125
+P S R R R+ I R+I R +R + QI+ C +
Sbjct: 71 IPGSFMRR------ESRPPERATLICRLIDRPMRPLFPSWLRDDLQIVATCMSLDERVPA 124
Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185
A+TGA +A +AA+ G+L +++ Y E
Sbjct: 125 DVLAVTGASMATLLAKIPFYG-------------PMAAVRVGLLGDDFVLNPSYREIERG 171
Query: 186 DVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
D+D T G +V V+ A + + ++ + +++LIK Q+ ++
Sbjct: 172 DLDLVVAGTPQG-VVMVEAGANQ--LPEGDVIEAIDFGYEAVSELIKAQQSILKE 223
>gi|170756696|ref|YP_001781955.1| polynucleotide phosphorylase/polyadenylase [Clostridium botulinum
B1 str. Okra]
gi|226702639|sp|B1II43|PNP_CLOBK RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|169121908|gb|ACA45744.1| polyribonucleotide nucleotidyltransferase [Clostridium botulinum B1
str. Okra]
Length = 702
Score = 139 bits (350), Expect = 3e-31, Method: Composition-based stats.
Identities = 47/243 (19%), Positives = 84/243 (34%), Gaps = 16/243 (6%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHG 57
R GR +++R IS + G+ L G T ++T AT + ++ I +
Sbjct: 312 RPDGRAFDEVRPISCEVGILPRTHGTGLFTRGLTQVMTVATLGALGDVQILDGIAEEESK 371
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y S G R+ G RAL ++ I + +
Sbjct: 372 RYMHHYNFPSYSVGEVRPLRGPGRREIGHGAL----AERALEPLIPSQEEFPYTIRLVSE 427
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
V+ ++G T A++ G+ +AL D ++ + + + + I D+
Sbjct: 428 VLSSNGSTSQASVCGSTLALLDAGVPIKRPAAGIAMGLITSED-------LEKEKVITDI 480
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T+ G I +Q + S L AK ++ K+
Sbjct: 481 QGIEDFFGDMDFKVAGTEKG-ITSIQFDTKIKGLSNSCVKDALEGAKKARLHILGKIKEC 539
Query: 238 ISN 240
I
Sbjct: 540 IPE 542
Score = 85.7 bits (210), Expect = 5e-15, Method: Composition-based stats.
Identities = 37/236 (15%), Positives = 83/236 (35%), Gaps = 31/236 (13%)
Query: 12 REISL---TRRVSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKHGWITAEYG 64
R++ + + A + + +GDT ++ A E + + + + G
Sbjct: 12 RKMKVDFGKTGMLSNA--AIFMSYGDTVVMINANASKEPREGIDFFPLSVDYEERLYSVG 69
Query: 65 MLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGG 124
+P R G+ +S R I R LR + QI+ ++ D
Sbjct: 70 KIPGGFIKR------EGKPSDKSILHARSIDRPLRPLFPKGYRNDVQIVNTVLSVEQDNL 123
Query: 125 TRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDST 184
AI G+ +AL S VAA+S G++ G I++ +
Sbjct: 124 PEILAINGSSLALC-------------LSSIPFTTPVAAVSVGLVDGEFIINPTVAQREN 170
Query: 185 IDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
+D T ++ V+ + ++ ++ + + +++ Q++ ++
Sbjct: 171 TILDLTVCATKE-RVMMVEAGGQE--IDEETMYSAIIFGFEECKNIVAFQEEAVAK 223
>gi|89095210|ref|ZP_01168133.1| polyribonucleotide nucleotidyltransferase [Oceanospirillum sp.
MED92]
gi|89080507|gb|EAR59756.1| polyribonucleotide nucleotidyltransferase [Oceanospirillum sp.
MED92]
Length = 701
Score = 139 bits (350), Expect = 3e-31, Method: Composition-based stats.
Identities = 45/242 (18%), Positives = 90/242 (37%), Gaps = 18/242 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +R I + V + GS L G+T + T TL ++++ I +
Sbjct: 317 RIDGRDTKTVRGIDVQIDVLQGTHGSALFTRGETQAIATCTLGTARDQQIIDAIEGERKD 376
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + R+ G + R + +V+ I I +
Sbjct: 377 PFMLHYNFPPYSVGECGRMGGAGRREIGHGRL----ARRGVAAVLPTQEEFPYTIRIVSE 432
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ GA +++ D ++ + V +G A+ +
Sbjct: 433 ITESNGSSSMASVCGASLSMMDAGVPLKAPVAGIAMGLVKEGDKFAVLTD---------I 483
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T+ G + +Q + +++ L A + ++K V
Sbjct: 484 LGDEDHLGDMDFKVAGTERG-VTALQMDIKITGITEEIMDIALEQAYEARVHILKEMATV 542
Query: 238 IS 239
I
Sbjct: 543 IG 544
Score = 109 bits (272), Expect = 4e-22, Method: Composition-based stats.
Identities = 36/234 (15%), Positives = 74/234 (31%), Gaps = 28/234 (11%)
Query: 13 EISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT----KHGWITAEYGMLP 67
E+++ V++ A GS LVK G +L T ++ + G +P
Sbjct: 15 EVTIETGRVARQATGSVLVKMGGNEVLCTVVGAKEAKAGQDFFPLSVHYQEKYYAVGRIP 74
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R R + R+I R +R + + Q++
Sbjct: 75 GGFFKR------EARPSEKETLTSRLIDRPIRPLFPKGYMNEVQVVCTVVSADKKNDPDI 128
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG-YPIVDLDYGEDSTID 186
AA+ G A +G + A G +++ + + T +
Sbjct: 129 AAMIGTSAA-------------LAISGIPFQGPIGAARVGFTEDAGYLLNPSFEQLQTSE 175
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
+D T ++ V+ A+ S+D + A + +I ++ +
Sbjct: 176 LDMVVAGTAD-AVLMVESEAQE--LSEDEMLGAVLFAHQEMQVVINAVNELAAE 226
>gi|50915014|ref|YP_060986.1| polynucleotide phosphorylase/polyadenylase [Streptococcus pyogenes
MGAS10394]
gi|81371590|sp|Q5X9W0|PNP_STRP6 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|50904088|gb|AAT87803.1| Polyribonucleotide nucleotidyltransferase [Streptococcus pyogenes
MGAS10394]
Length = 710
Score = 139 bits (350), Expect = 3e-31, Method: Composition-based stats.
Identities = 43/244 (17%), Positives = 81/244 (33%), Gaps = 18/244 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56
+R GR+ +++R + GS L G T L+ T E ++ +
Sbjct: 317 IRPDGRKIDEIRPLDAVVDFLPKVHGSGLFTRGQTQALSILTLAPMGETQIIDGLAPEYK 376
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y S G + A R+ G RAL V+ I +
Sbjct: 377 KRFLHHYNFPQYSVGETGRYGAAGRREIGHGALG----ERALEQVLPSLEEFPYAIRLVA 432
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V++++G + A+I +AL ++ + + + D
Sbjct: 433 EVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISD---------GTNYTVLTD 483
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T G I +Q + A + L AK +++ + +
Sbjct: 484 IQGLEDHFGDMDFKVAGTREG-ITALQMDIKIAGITPQILEEALAQAKKARFEILDVIEA 542
Query: 237 VISN 240
I+
Sbjct: 543 TIAE 546
Score = 104 bits (258), Expect = 2e-20, Method: Composition-based stats.
Identities = 40/231 (17%), Positives = 81/231 (35%), Gaps = 26/231 (11%)
Query: 13 EISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKV---PMWIRNTKHGWITAEYGMLPR 68
+ + V+K A G+ +V++G++ +LT A + +K+ + + G P
Sbjct: 14 PLVVEVGQVAKQANGATVVRYGESTVLTAAVMSKKMATGDFFPLQVNYEEKMYAAGKFPG 73
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
R GR + R+I R +R + Q+ + A
Sbjct: 74 GFMKR------EGRPSTDATLTARLIDRPIRPMFAEGFRNEVQVTNTVLSYDENASAPMA 127
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+ G+ +A G +A + G + G I++ D + ++
Sbjct: 128 AMFGSSLA-------------LSISDIPFNGPIAGVQVGYIDGEFIINPDKEQMEASLLE 174
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
+ I V+ A+ S+D L I +LI Q+ +++
Sbjct: 175 LTVAGSKE-AINMVESGAKE--LSEDIMLEALLKGHQAIQELIAFQEQIVA 222
>gi|87123698|ref|ZP_01079548.1| polyribonucleotide nucleotidyltransferase [Synechococcus sp.
RS9917]
gi|86168267|gb|EAQ69524.1| polyribonucleotide nucleotidyltransferase [Synechococcus sp.
RS9917]
Length = 691
Score = 139 bits (350), Expect = 3e-31, Method: Composition-based stats.
Identities = 47/242 (19%), Positives = 89/242 (36%), Gaps = 19/242 (7%)
Query: 2 RLSGRQENQMREISLTRRVSK-YAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
R+ GR +++R IS V GS L + G T +L+TATL + + + +
Sbjct: 293 RVDGRGLDEVRPISAAAGVLPKRVHGSGLFQRGLTQVLSTATLGTPSDAQEMDDLNPSTE 352
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P S G + R+ G RA+ V+ + +
Sbjct: 353 KTYLHHYNFPPYSVGETKPMRSPGRREIGHGAL----AERAILPVLPAKDTFPYVVRVVS 408
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V+ ++G T ++ G+ +AL D ++ + + + +G + D
Sbjct: 409 EVLSSNGSTSMGSVCGSTLALMDAGVPLKSPVSGAAMGLIKEGDEV---------RILTD 459
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D TD G I +Q + + +N A+ +++
Sbjct: 460 IQGIEDFLGDMDFKVAGTDKG-ITALQMDMKITGLAVSTVAEAVNQARPARLHILEKMMQ 518
Query: 237 VI 238
I
Sbjct: 519 AI 520
Score = 91.4 bits (225), Expect = 1e-16, Method: Composition-based stats.
Identities = 45/215 (20%), Positives = 80/215 (37%), Gaps = 25/215 (11%)
Query: 29 LVKFGDTHLLTTAT---LEEKVPMWIRNTKHGWITAEYGMLPRSTGNRVKREAVSGRQGG 85
+++ GDT +L TAT E + + G +P S R GR
Sbjct: 1 MIECGDTSVLVTATRSSGREGIDFLPLICDYEERLYAAGRIPGSFMRR------EGRPPE 54
Query: 86 RSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHME 145
R+ I R+I R +R + QI+ C + A+TGA +A
Sbjct: 55 RATLISRLIDRPMRPLFPNWLRDDLQIVATCMSLDERVPADVLAVTGASMATLLAGIPFH 114
Query: 146 DCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGS 205
+AA+ G+L +++ Y E D+D T G +V V+
Sbjct: 115 G-------------PMAAVRVGLLGDDFVLNPSYREIERGDLDLVVAGTPEG-VVMVEAG 160
Query: 206 AERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
A + + ++ + + +LIK Q++++
Sbjct: 161 ANQ--LPEQDVIEAIDFGYEAVCELIKAQQEILKQ 193
>gi|95932676|gb|ABF57675.1| chloroplast polyribonucleotide phosphorylase [Chlamydomonas
reinhardtii]
Length = 854
Score = 139 bits (350), Expect = 3e-31, Method: Composition-based stats.
Identities = 42/246 (17%), Positives = 82/246 (33%), Gaps = 22/246 (8%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL---------EEKVPMWI 51
+R GR +R ++ + GS L G+T + ATL +
Sbjct: 415 VRADGRGVADIRPVTCRAGLLPRTHGSALFTRGETQSICVATLGSANDALRSDTMRKPDG 474
Query: 52 RNTKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQ 111
+ + G +Y P S G + A R+ G + RAL ++ A
Sbjct: 475 EDPESGRFYLQYHFPPSSVGETGRTGAPGRRELGHGEL----AQRALAPILPDPAQFPYT 530
Query: 112 IIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG 171
+ ++ + +++G + A++ G +A+ D + + +L+
Sbjct: 531 VRVESTITESNGSSSMASVCGGCLAMMDAGVPIARPVAGIAMGLILE--------SNGRN 582
Query: 172 YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231
+ D+ ED+ D+D D I Q + + D L AK ++
Sbjct: 583 AVLSDILGSEDALGDMDFKVAG-DHDAITAFQMDIKVEGITLDIMAKALQQAKAGRRHIL 641
Query: 232 KLQKDV 237
Sbjct: 642 DQMAKC 647
Score = 76.0 bits (185), Expect = 4e-12, Method: Composition-based stats.
Identities = 34/231 (14%), Positives = 65/231 (28%), Gaps = 19/231 (8%)
Query: 13 EISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG 71
EI L + + A G+ + G+T L TA + +
Sbjct: 96 EIKLETGEIGRQANGAIMATAGETMLYATACCS--ASPTGDGSFTPLTVNYAERFSAAGR 153
Query: 72 NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAIT 131
GR + R++ R +R + QI+ AIT
Sbjct: 154 TSGGFVKRDGRPRDAEVLVSRLVDRPIRPMFAKGWANDTQILEWVLSYDGVNDPEPLAIT 213
Query: 132 GAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANF 191
A AL ++ ++ G I++ E T +D
Sbjct: 214 AAAAALLISDIPLKKAVAGVRVGMSAD------------GGFIINPTVEEMETSRLDLMV 261
Query: 192 VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNEV 242
T ++ ++ +++ L + IA L + + +V
Sbjct: 262 AGTRD-AVLMIE--GFCDFLTEEQMIEALGKGSEAIASLCDQM-EAWAKKV 308
>gi|220912209|ref|YP_002487518.1| polynucleotide phosphorylase/polyadenylase [Arthrobacter
chlorophenolicus A6]
gi|254782702|sp|B8HG67|PNP_ARTCA RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|219859087|gb|ACL39429.1| guanosine pentaphosphate synthetase I/polyribonucleotide
nucleotidyltransferase [Arthrobacter chlorophenolicus
A6]
Length = 752
Score = 139 bits (350), Expect = 3e-31, Method: Composition-based stats.
Identities = 39/242 (16%), Positives = 83/242 (34%), Gaps = 14/242 (5%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
+R+ GR +R+++ V GS + + G+T ++ TL E+ +
Sbjct: 343 IRIDGRGLTDIRQLTAEVEVLPRVHGSAIFERGETQIMGVTTLNMLKMEQQIDSLSPVTR 402
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P STG + + R+ G RAL V+ I
Sbjct: 403 KRYMHNYNFPPYSTGETGRVGSPKRREIGHGAL----AERALVPVLPSREEFPYAIRQVS 458
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+ + ++G T ++ + +++ + ++ + V G + D
Sbjct: 459 EALGSNGSTSMGSVCASTLSMLNAGVPLKAAVAGIAMGLVSDQ-----VDGQTRYAALTD 513
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED+ D+D T + +Q + A L A++ ++++
Sbjct: 514 ILGAEDAFGDMDFKVAGTSEF-VTAIQLDTKLDGIPASVLAAALKQAREARLHILEVINS 572
Query: 237 VI 238
I
Sbjct: 573 AI 574
Score = 67.6 bits (163), Expect = 1e-09, Method: Composition-based stats.
Identities = 42/238 (17%), Positives = 68/238 (28%), Gaps = 29/238 (12%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGD-THLLTTATLE----EKVPMWIRNTKHGWITAEYGM 65
R I ++K A G+ +V + T LL+ T E + G
Sbjct: 21 RVIRFETGRLAKQAAGAAMVYIDEDTALLSATTAGKHPREGFDFFPLTVDVEERMYAAGR 80
Query: 66 LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125
+P S R GR + R++ R LR QI++ I D
Sbjct: 81 IPGSFFRR------EGRPSTEAILACRLMDRPLRPAFVKGLRNEVQIVVTVLAINPDELY 134
Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185
AI + ++ +++ V A G
Sbjct: 135 DVVAINASSMSTQLSGLPFSGPIGGVRVALV------ADENGSQWVAFPKHSQLENSVFN 188
Query: 186 DVDANFVMTDSGHIVEVQGSAERATF-----------SQDHFFAMLNLAKDRIADLIK 232
V A V D I+ V+ A ++ +++ L AK I L
Sbjct: 189 MVVAGRVAGDDVAIMMVEAEATDNSWNLIKEQGATAPTEEVVSEGLEAAKPFIKALCD 246
>gi|288929802|ref|ZP_06423645.1| polyribonucleotide nucleotidyltransferase [Prevotella sp. oral
taxon 317 str. F0108]
gi|288328903|gb|EFC67491.1| polyribonucleotide nucleotidyltransferase [Prevotella sp. oral
taxon 317 str. F0108]
Length = 742
Score = 139 bits (350), Expect = 3e-31, Method: Composition-based stats.
Identities = 45/243 (18%), Positives = 86/243 (35%), Gaps = 18/243 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHG 57
RL GR+ +++R I GS + G+T L+T T L+EK+ + + +
Sbjct: 325 RLDGRKTDEIRPIWCEVSSLPMPHGSAIFTRGETQSLSTCTLGTKLDEKMVDDVLDKSYM 384
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P STG + V R+ G R L+ + + +
Sbjct: 385 RFLLHYNFPPFSTGEAKAQRGVGRREIGHGHL----AWRGLKGQIPADY--PYTVRVVSQ 438
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+++++G + A + +AL D ++ + + + G + D+
Sbjct: 439 ILESNGSSSMATVCAGTLALMDAGVPLKKPVSGIAMGLIKN-------PGEEKYAILSDI 491
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T G + Q + S + L AK ++ +
Sbjct: 492 LGDEDHLGDMDFKTTGTKDG-LTATQMDIKCDGLSFEILEKALMQAKAGREHILGKLTET 550
Query: 238 ISN 240
I+
Sbjct: 551 IAE 553
Score = 108 bits (270), Expect = 5e-22, Method: Composition-based stats.
Identities = 39/241 (16%), Positives = 77/241 (31%), Gaps = 26/241 (10%)
Query: 3 LSGRQENQMREISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
GR IS+ V+K A+GS +V+ G+T LL T +
Sbjct: 11 PDGRT------ISIETGKVAKQADGSAVVRMGNTVLLATVCAAKDAVPGTDFMPLQVDYR 64
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
E G+ G R++ R LR + + + +
Sbjct: 65 EQYSAAGRFP--GGFTKREGKPGDNEILTSRLVDRVLRPLFPSNYHAEVYVNVMLLSADG 122
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
A A A+ +++ + + G +V+ + +
Sbjct: 123 VDQPDALAGLAASSAMAC-------------SDIPFDFYISEVRVARVNGEYVVNPTFEQ 169
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
D+D T +I+ V+ E ++ L +A D I + +Q++ ++ E
Sbjct: 170 MKEADMDIMVGATKD-NIMMVE--GEMDEVTEQDLIQALKVAHDAIKPMCTMQEE-LAKE 225
Query: 242 V 242
+
Sbjct: 226 L 226
>gi|282897293|ref|ZP_06305295.1| Polyribonucleotide nucleotidyltransferase [Raphidiopsis brookii D9]
gi|281197945|gb|EFA72839.1| Polyribonucleotide nucleotidyltransferase [Raphidiopsis brookii D9]
Length = 458
Score = 139 bits (350), Expect = 3e-31, Method: Composition-based stats.
Identities = 48/244 (19%), Positives = 89/244 (36%), Gaps = 20/244 (8%)
Query: 1 MRLSGRQENQMREISLTRRVSKY-AEGSCLVKFGDTHLLTTATLE-----EKVPMWIRNT 54
+R+ GR+ +++R +S + GS L G T +L+ TL + + ++
Sbjct: 62 VRVDGRKLDEVRPVSSQVGLLPRRVHGSGLFNRGLTQVLSACTLGTPGDAQSLSDDLQVD 121
Query: 55 KHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIII 114
+ Y P S G A R+ G RA+ V+ I +
Sbjct: 122 QSKRYLHHYNFPPFSVGETKPLRAPGRREIGHGAL----AERAILPVLPTKEQFPYVIRV 177
Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPI 174
+V+ ++G T ++ G+ +AL D + + + + +G +
Sbjct: 178 VSEVLSSNGSTSMGSVCGSTLALMDAGVPITKPVSGAAMGLIKEGSEVRVLTD------- 230
Query: 175 VDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
+ ED D+D TD+G I +Q + + S D L AKD ++
Sbjct: 231 --IQGIEDFLGDMDFKVAGTDTG-ITALQMDMKISGLSLDVIKQALEQAKDARLHILDKM 287
Query: 235 KDVI 238
I
Sbjct: 288 LQTI 291
>gi|17231888|ref|NP_488436.1| polynucleotide phosphorylase/polyadenylase [Nostoc sp. PCC 7120]
gi|81770047|sp|Q8YP11|PNP_ANASP RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|17133532|dbj|BAB76095.1| polyribonucleotide nucleotidyltransferase [Nostoc sp. PCC 7120]
Length = 718
Score = 139 bits (350), Expect = 3e-31, Method: Composition-based stats.
Identities = 48/246 (19%), Positives = 90/246 (36%), Gaps = 20/246 (8%)
Query: 1 MRLSGRQENQMREISLTRRVSK-YAEGSCLVKFGDTHLLTTATLE-----EKVPMWIRNT 54
+R+ GR+ +Q+R +S V GS L G T +L+ TL + + ++
Sbjct: 322 VRVDGRKLDQVRPVSSQVGVLPKRVHGSGLFNRGLTQVLSACTLGTPGDAQNLNDDLQTD 381
Query: 55 KHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIII 114
+ Y P S G A R+ G RA+ V+ I +
Sbjct: 382 QSKRYLHHYNFPPFSVGETKPLRAPGRREIGHGAL----AERAILPVLPPKEQFPYVIRV 437
Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPI 174
+V+ ++G T ++ G+ +AL D + + + + +G +
Sbjct: 438 VSEVLSSNGSTSMGSVCGSTLALMDAGVPILKPVSGAAMGLIKEGDEVRVLTD------- 490
Query: 175 VDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
+ ED D+D TD+G I +Q + + S + ++ AKD ++
Sbjct: 491 --IQGIEDFLGDMDFKVAGTDAG-ITALQMDMKISGLSLEVIAQAIHQAKDARLHILDKM 547
Query: 235 KDVISN 240
I
Sbjct: 548 LQTIDQ 553
Score = 102 bits (255), Expect = 4e-20, Method: Composition-based stats.
Identities = 49/235 (20%), Positives = 87/235 (37%), Gaps = 26/235 (11%)
Query: 10 QMREISLTRRV-SKYAEGSCLVKFGDTHLLTTAT---LEEKVPMWIRNTKHGWITAEYGM 65
R+I L + + A GS L++ GDT +L TAT E + + G
Sbjct: 11 DGRDIRLKVGLLAPQAGGSVLIESGDTAVLVTATRSPGREGIDFLPLTVDYEERLYAAGR 70
Query: 66 LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125
+P R GR ++ R+I R LR + Q++ +
Sbjct: 71 IPGGIMRR------EGRPPEKTILTSRLIDRPLRPLFPSWLRDDLQVVALTMSMDEQVPP 124
Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185
A+TGA +A G +AA+ G++ I++ Y E
Sbjct: 125 DVLAVTGASIATLIAKI-------------PFNGPMAAVRVGLVGDDFIINPTYAEIEAG 171
Query: 186 DVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
D+D + G ++ V+ A + + ++ + + DLIK Q D+++
Sbjct: 172 DLDLVVAGSPHG-VIMVEAGANQ--LPERDIIEAIDFGYEAVRDLIKAQLDLVAE 223
>gi|254776111|ref|ZP_05217627.1| polynucleotide phosphorylase/polyadenylase [Mycobacterium avium
subsp. avium ATCC 25291]
Length = 748
Score = 139 bits (350), Expect = 3e-31, Method: Composition-based stats.
Identities = 45/248 (18%), Positives = 83/248 (33%), Gaps = 13/248 (5%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKH 56
R+ GR +R +S V A GS L + G+T +L TL+ + +
Sbjct: 337 FRIDGRGITDIRALSAEVAVVPRAHGSALFQRGETQILGVTTLDMVKMAQQIDSLGPETT 396
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P STG + + R+ G RAL V+ I
Sbjct: 397 KRYMHHYNFPPFSTGETGRVGSPKRREIGHGAL----AERALVPVLPSLEDFPYAIRQVS 452
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCG----MLCGY 172
+ + ++G T ++ + +AL + ++ + V G
Sbjct: 453 EALGSNGSTSMGSVCASTLALLNAGVPLKAPVAGIAMGLVSDDIEVEAGDGTKSLERRFV 512
Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
+ D+ ED+ D+D T + +Q + L+ AKD +++
Sbjct: 513 TLTDILGAEDAFGDMDFKVAGTKDF-VTALQLDTKLDGIPSQVLAGALSQAKDARLIILE 571
Query: 233 LQKDVISN 240
+ + I
Sbjct: 572 VMAEAIDE 579
>gi|1924972|gb|AAC49669.1| polyribonucleotide phophorylase [Spinacia oleracea]
Length = 822
Score = 139 bits (350), Expect = 3e-31, Method: Composition-based stats.
Identities = 43/242 (17%), Positives = 81/242 (33%), Gaps = 13/242 (5%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEE----KVPMWIRNTKH- 56
R GR +R I+ + A GS L G+T L TL + + +
Sbjct: 437 RSDGRTSEGVRPINSRCGLLPRAHGSALFTRGETQALAVVTLGDKQMAQRIDTLEGDDES 496
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
+Y P G + A S R+ G RAL ++ + ++
Sbjct: 497 KRFYLQYSFPPSCVGEAGRVGAPSRREIGHGTL----AERALEPILPSEDEFPYTVRVES 552
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
++ +++G + A++ G +AL D ++ + VL G + D
Sbjct: 553 NITESNGSSSMASVCGGSLALLDAGVPVKCPIAGIAMGMVLDTKEFG---GDGTPLILSD 609
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED++ D+D + Q + + L AKD ++
Sbjct: 610 ITGSEDASGDMDFKVAGNAD-CVTAFQMDIKVGGITLSVMKQALLQAKDGRKIILAEMSK 668
Query: 237 VI 238
+
Sbjct: 669 CL 670
Score = 92.6 bits (228), Expect = 4e-17, Method: Composition-based stats.
Identities = 36/231 (15%), Positives = 71/231 (30%), Gaps = 20/231 (8%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRST 70
R I + + + A G+ V G+T + TT + + E T
Sbjct: 87 RHILVETGHIGRQASGAVTVTDGETIVYTTVCMSDIPSEPSDFFPLSVNYQERFSAAGRT 146
Query: 71 GNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAI 130
GR + R+I R LR+ + QI+ A+
Sbjct: 147 S--GGFFKREGRPKDNEVLVCRLIDRPLRTTMLKGFYHETQILSWVLSYDGLHPPDALAV 204
Query: 131 TGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDAN 190
T A +A+ VA + G++ G IV+ E ++D
Sbjct: 205 TAAGIAV-------------ALSELPHTKPVAGVRVGLVGGKYIVNPTTNEMENSELDLV 251
Query: 191 FVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
T I+ ++ ++ + + +D + + K + + +
Sbjct: 252 VAGT-DSAILMIE--GYCNFLPEEKLLEAVEVGQDAVRAICKEV-EALVEK 298
>gi|1588265|prf||2208281A 100RNP protein
Length = 779
Score = 139 bits (350), Expect = 3e-31, Method: Composition-based stats.
Identities = 43/242 (17%), Positives = 81/242 (33%), Gaps = 13/242 (5%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEE----KVPMWIRNTKH- 56
R GR +R I+ + A GS L G+T L TL + + +
Sbjct: 435 RSDGRTSEGVRPINSRCGLLPRAHGSALFTRGETQALAVVTLGDKQMAQRIDTLEGDDES 494
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
+Y P G + A S R+ G RAL ++ + ++
Sbjct: 495 KRFYLQYSFPPSCVGEAGRVGAPSRREIGHGTL----AERALEPILPSEDEFPYTVRVES 550
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
++ +++G + A++ G +AL D ++ + VL G + D
Sbjct: 551 NITESNGSSSMASVCGGSLALLDAGVPVKCPIAGIAMGMVLDTKEFG---GDGTPLILSD 607
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED++ D+D + Q + + L AKD ++
Sbjct: 608 ITGSEDASGDMDFKVAGNAD-CVTAFQMDIKVGGITLSVMKQALLQAKDGRKIILAEMSK 666
Query: 237 VI 238
+
Sbjct: 667 CL 668
Score = 90.7 bits (223), Expect = 2e-16, Method: Composition-based stats.
Identities = 36/231 (15%), Positives = 71/231 (30%), Gaps = 20/231 (8%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRST 70
R I + + + A G+ V G+T + TT + + E T
Sbjct: 85 RHILVETGHIGRQASGAVTVTDGETIVYTTVCMSDIPSEPSDFFPLSVNYQERFSAAGRT 144
Query: 71 GNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAI 130
GR + R+I R LR+ + QI+ A+
Sbjct: 145 S--GGFFKREGRPKDNEVLVCRLIDRPLRTTMLKGFYHETQILSWVLSYDGLHPPDALAV 202
Query: 131 TGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDAN 190
T A +A+ VA + G++ G IV+ E ++D
Sbjct: 203 TAAGIAV-------------ALSELFHTKPVAGVRVGLVGGKYIVNPTTNEMENSELDLV 249
Query: 191 FVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
T I+ ++ ++ + + +D + + K + + +
Sbjct: 250 VAGT-DSAILMIE--GYCNFLPEEKLLEAVEVGQDAVRAICKEV-EALVEK 296
>gi|312867935|ref|ZP_07728139.1| polyribonucleotide nucleotidyltransferase [Streptococcus
parasanguinis F0405]
gi|311096339|gb|EFQ54579.1| polyribonucleotide nucleotidyltransferase [Streptococcus
parasanguinis F0405]
Length = 740
Score = 139 bits (350), Expect = 3e-31, Method: Composition-based stats.
Identities = 42/244 (17%), Positives = 80/244 (32%), Gaps = 18/244 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56
+R GR+ +++R + GS L G T L+ T E ++ +
Sbjct: 317 VRPDGRKVDEIRPLDAVVDFLPRVHGSGLFTRGQTQALSILTLAPMGETQIIDGLDPEYK 376
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y S G + A R+ G RAL V+ I +
Sbjct: 377 KRFMHHYNFPQYSVGETGRYGAPGRREIGHGALG----ERALAQVLPSLEEFPYAIRLVA 432
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V++++G + A+I +AL ++ + + + D
Sbjct: 433 EVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISD---------GNNYTVLTD 483
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T G I +Q + + + L AK +++ + +
Sbjct: 484 IQGLEDHFGDMDFKVAGTRDG-ITALQMDIKIQGITAEILTEALAQAKKARFEILDVIEA 542
Query: 237 VISN 240
I
Sbjct: 543 TIPE 546
Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats.
Identities = 40/232 (17%), Positives = 85/232 (36%), Gaps = 26/232 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKV---PMWIRNTKHGWITAEYGMLP 67
RE+ + V+K A G+ +V++G++ +LT A + +K+ + + G P
Sbjct: 13 RELIVETGQVAKQANGAVVVRYGESTVLTAAVMSKKMATGDFFPLQVNYEEKMYAAGKFP 72
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R GR + R+I R +R + Q+I +
Sbjct: 73 GGFMKR------EGRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDENASAPM 126
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
AA+ G+ +A G +A + G + G +++ + +
Sbjct: 127 AAMFGSSLA-------------LSISDIPFDGPIAGVQVGYVDGEIVINPTQEQAEHSLL 173
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
+ T I V+ A+ S++ L + + +LI Q+++++
Sbjct: 174 ELTVAGTKH-AINMVESGAKE--LSEEIMLEALLKGHEAVKELIAFQEEIVA 222
>gi|94989291|ref|YP_597392.1| polynucleotide phosphorylase/polyadenylase [Streptococcus pyogenes
MGAS9429]
gi|122987076|sp|Q1JJX5|PNP_STRPC RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|94542799|gb|ABF32848.1| polyribonucleotide nucleotidyltransferase [Streptococcus pyogenes
MGAS9429]
Length = 710
Score = 139 bits (350), Expect = 3e-31, Method: Composition-based stats.
Identities = 43/244 (17%), Positives = 81/244 (33%), Gaps = 18/244 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56
+R GR+ +++R + GS L G T L+ T E ++ +
Sbjct: 317 IRPDGRKIDEIRPLDAVVDFLPKVHGSGLFTRGQTQALSILTLAPMGETQIIDGLAPEYK 376
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y S G + A R+ G RAL V+ I +
Sbjct: 377 KRFLHHYNFPQYSVGETGRYGAAGRREIGHGALG----ERALEQVLPSLEEFPYAIRLVA 432
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V++++G + A+I +AL ++ + + + D
Sbjct: 433 EVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISD---------GTNYTVLTD 483
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T G I +Q + A + L AK +++ + +
Sbjct: 484 IQGLEDHFGDMDFKVAGTREG-ITALQMDIKIAGITPQILEEALAQAKKARFEILDVIEA 542
Query: 237 VISN 240
I+
Sbjct: 543 TIAE 546
Score = 103 bits (257), Expect = 2e-20, Method: Composition-based stats.
Identities = 42/231 (18%), Positives = 82/231 (35%), Gaps = 26/231 (11%)
Query: 13 EISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKV---PMWIRNTKHGWITAEYGMLPR 68
+ + V+K A G+ +V++GD+ +LT A + +K+ + + G P
Sbjct: 14 PLVVEVGQVAKQANGATVVRYGDSTVLTAAVMSKKMATGDFFPLQVNYEEKMYAAGKFPG 73
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
R GR + R+I R +R + Q+I + A
Sbjct: 74 GFMKR------EGRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDENASAPMA 127
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+ G+ +A G +A + G + G I++ D + ++
Sbjct: 128 AMFGSSLA-------------LSISDIPFNGPIAGVQVGYIDGEFIINPDKEQMEASLLE 174
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
+ I V+ A+ S+D L I +LI Q+ +++
Sbjct: 175 LTVAGSKE-AINMVESGAKE--LSEDIMLEALLKGHQAIQELIAFQEQIVA 222
>gi|152965434|ref|YP_001361218.1| polynucleotide phosphorylase/polyadenylase [Kineococcus
radiotolerans SRS30216]
gi|187610277|sp|A6W815|PNP_KINRD RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|151359951|gb|ABS02954.1| guanosine pentaphosphate synthetase I/polyribonucleotide
nucleotidyltransferase [Kineococcus radiotolerans
SRS30216]
Length = 746
Score = 139 bits (350), Expect = 3e-31, Method: Composition-based stats.
Identities = 42/242 (17%), Positives = 80/242 (33%), Gaps = 14/242 (5%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
+R+ GR +R +S V GS L + G+T +L TL E+ +
Sbjct: 344 VRIDGRGLADIRTLSAEVEVLPRVHGSALFERGETQILGVTTLNMLRMEQQLDTLSPVTR 403
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P STG + + R+ G RAL V+ I
Sbjct: 404 KRYMHNYNFPPYSTGETGRVGSPKRREIGHGAL----AERALVPVLPAREDFPYAIRQVS 459
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+ + ++G T ++ + ++L + + + + G + D
Sbjct: 460 EALGSNGSTSMGSVCASTLSLLNAGVPLRAAVAGIAMGLISD-----TVDGETRYAALTD 514
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED+ D+D T + +Q + L A+D ++ + +
Sbjct: 515 ILGAEDAFGDMDFKVAGTKEF-VTAIQLDTKLDGIPASVLAGALTQARDARLHILDVMAE 573
Query: 237 VI 238
I
Sbjct: 574 AI 575
>gi|313888270|ref|ZP_07821941.1| polyribonucleotide nucleotidyltransferase [Peptoniphilus harei
ACS-146-V-Sch2b]
gi|312845673|gb|EFR33063.1| polyribonucleotide nucleotidyltransferase [Peptoniphilus harei
ACS-146-V-Sch2b]
Length = 703
Score = 139 bits (350), Expect = 3e-31, Method: Composition-based stats.
Identities = 51/243 (20%), Positives = 88/243 (36%), Gaps = 18/243 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R R+ ++R +S V GS L G T +L+ ATL EE+V + + K
Sbjct: 312 RPDDRKLTEIRHLSSEVGVLPRTHGSGLFTRGQTQVLSIATLGAISEEQVIDGLGDDKPK 371
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y G+ + R+ G RAL V+ S I + +
Sbjct: 372 RYIHHYNFPGFCVGDTKPSRSPGRREIGHGAL----AERALIPVIPDSEEFPYTIRVVSE 427
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
V+ ++G + A+I G+ +AL D ++ + + + V + D+
Sbjct: 428 VLSSNGSSSQASICGSTLALMDAGVPIKAPVAGIAMGLIEEDGVI---------KILTDI 478
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T G I +Q + ++ L AKD +++
Sbjct: 479 QGLEDHFGDMDFKVAGTRKG-ITAIQMDIKVEGIKKEILETALERAKDARFEILDHIATT 537
Query: 238 ISN 240
I
Sbjct: 538 IEK 540
Score = 102 bits (253), Expect = 5e-20, Method: Composition-based stats.
Identities = 42/234 (17%), Positives = 87/234 (37%), Gaps = 28/234 (11%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKHGWITAEYGMLPR 68
+ +T V++ A G+CLV++GDT +L TAT E + + + + G +P
Sbjct: 14 LKVTIGKVAEQANGACLVQYGDTVVLVTATSSSKPREGIDFFPLSVDYEEKMYAVGKIPG 73
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
R GR ++ R+I R LR + I+ + D
Sbjct: 74 GFIKR------EGRPSEKATLSARLIDRPLRPLFPEGYRNDVHIVATVLSVDQDHSPEIV 127
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+ G+ +A G ++ G + G I++ + + + ++
Sbjct: 128 AMIGSSIA-------------LSISDIPFDGPTGSVEVGYIDGKYIINPNEEQRNNSRIN 174
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNEV 242
+ T + I+ V+ A+ S+ + + I ++ + I+ E+
Sbjct: 175 LSLAGTKT-AIMMVEAGAQE--VSEAEMLEAILEGHEVIKEICDFVDE-IAKEI 224
>gi|57641569|ref|YP_184047.1| exosome complex exonuclease Rrp41 [Thermococcus kodakarensis KOD1]
gi|73919276|sp|Q5JIR6|ECX1_PYRKO RecName: Full=Probable exosome complex exonuclease 1
gi|57159893|dbj|BAD85823.1| exosome subunit Rrp41p homolog, 3'-5' exoribonuclease [Thermococcus
kodakarensis KOD1]
Length = 249
Score = 139 bits (350), Expect = 3e-31, Method: Composition-based stats.
Identities = 62/242 (25%), Positives = 104/242 (42%), Gaps = 23/242 (9%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKV-PMWIRNTKHGWIT 60
R+ GR++ ++R I + V K A+GS V++G +L ++ P ++ +
Sbjct: 17 RIDGRKKYELRPIKMEVGVLKNADGSAYVEWGKNKVLAAVYGPREIHPKHLQRPDRAILR 76
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
Y M P S R K RS EI ++I AL + L I + +++Q
Sbjct: 77 VRYNMAPFSVEERKKPG-----PDRRSVEISKVIRGALEPALLLHMFPRTAIDVFIEILQ 131
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
AD GTR A IT A +AL D M+D VAA + G + G ++DL+
Sbjct: 132 ADAGTRVAGITAASLALADAGIPMKDL-------------VAACAAGKIDGEIVLDLNKE 178
Query: 181 EDSTIDVDANF-VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
ED+ + D +M I +Q ++D F + LA + + Q++ +
Sbjct: 179 EDNYGEADVPVAIMPLKNDITLLQMDGY---LTKDEFLEAVRLAIKGAKAVYQKQREALK 235
Query: 240 NE 241
+
Sbjct: 236 EK 237
>gi|71904310|ref|YP_281113.1| polynucleotide phosphorylase/polyadenylase [Streptococcus pyogenes
MGAS6180]
gi|94991237|ref|YP_599337.1| polynucleotide phosphorylase/polyadenylase [Streptococcus pyogenes
MGAS10270]
gi|122986981|sp|Q1JEW6|PNP_STRPD RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|123747743|sp|Q48RA2|PNP_STRPM RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|71803405|gb|AAX72758.1| polyribonucleotide nucleotidyltransferase [Streptococcus pyogenes
MGAS6180]
gi|94544745|gb|ABF34793.1| Polyribonucleotide nucleotidyltransferase [Streptococcus pyogenes
MGAS10270]
Length = 710
Score = 139 bits (350), Expect = 3e-31, Method: Composition-based stats.
Identities = 43/244 (17%), Positives = 81/244 (33%), Gaps = 18/244 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56
+R GR+ +++R + GS L G T L+ T E ++ +
Sbjct: 317 IRPDGRKIDEIRPLDAVVDFLPKVHGSGLFTRGQTQALSILTLAPMGETQIIDGLAPEYK 376
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y S G + A R+ G RAL V+ I +
Sbjct: 377 KRFLHHYNFPQYSVGETGRYGAAGRREIGHGALG----ERALEQVLPSLEEFPYAIRLVA 432
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V++++G + A+I +AL ++ + + + D
Sbjct: 433 EVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISD---------GTNYTVLTD 483
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T G I +Q + A + L AK +++ + +
Sbjct: 484 IQGLEDHFGDMDFKVAGTREG-ITALQMDIKIAGITPQILEEALAQAKKARFEILDVIEA 542
Query: 237 VISN 240
I+
Sbjct: 543 TIAE 546
Score = 103 bits (257), Expect = 2e-20, Method: Composition-based stats.
Identities = 41/231 (17%), Positives = 82/231 (35%), Gaps = 26/231 (11%)
Query: 13 EISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKV---PMWIRNTKHGWITAEYGMLPR 68
+ + V+K A G+ +V++G++ +LT A + +K+ + + G P
Sbjct: 14 PLVVEVGQVAKQANGATVVRYGESTVLTAAVMSKKMATGDFFPLQVNYEEKMYAAGKFPG 73
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
R GR + R+I R +R + Q+I + A
Sbjct: 74 GFMKR------EGRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDENASAPMA 127
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+ G+ +A G +A + G + G I++ D + ++
Sbjct: 128 AMFGSSLA-------------LSISDIPFNGPIAGVQVGYIDGEFIINPDKEQMEASLLE 174
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
+ I V+ A+ S+D L I +LI Q+ +++
Sbjct: 175 LTVAGSKE-AINMVESGAKE--LSEDIMLEALLKGHQAIQELIAFQEQIVA 222
>gi|311747141|ref|ZP_07720926.1| polyribonucleotide nucleotidyltransferase [Algoriphagus sp. PR1]
gi|126578849|gb|EAZ83013.1| polyribonucleotide nucleotidyltransferase [Algoriphagus sp. PR1]
Length = 712
Score = 139 bits (350), Expect = 3e-31, Method: Composition-based stats.
Identities = 44/238 (18%), Positives = 83/238 (34%), Gaps = 8/238 (3%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
RL GR+ N++R I A GS + G+T LTT TL K+ + +
Sbjct: 319 RLDGRKLNEVRPIWSVVDYLPSAHGSAVFTRGETQSLTTCTLGTKMDEMMVDGATISGYN 378
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
++ + G + G R + RAL+ V+ + I I D++++
Sbjct: 379 KFYLHYNFPGFSTGEVKPNRGPGRREVGHGNLAMRALKKVLPPAEENPYTIRIVSDILES 438
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
+G + A + +A+ D ++ + + + + D+ E
Sbjct: 439 NGSSSMATVCAGSLAMMDAGIQIKSAVTGIAMGMISDANTG-------KYSILSDILGDE 491
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
D D+D T G I Q + L AK+ ++ ++
Sbjct: 492 DHLGDMDFKVTGTSQG-ITACQMDLKVEGLDYSVLKEALLQAKEGRLHILDEITKTLA 548
Score = 96.1 bits (237), Expect = 4e-18, Method: Composition-based stats.
Identities = 42/235 (17%), Positives = 75/235 (31%), Gaps = 27/235 (11%)
Query: 7 QENQMREISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITA 61
+ REI + ++K A+GS +VK G LL T E V + + A
Sbjct: 11 KLEDGREIIIETGALAKQADGSVVVKMGKAMLLATVVSKKEAGEGVDFLPMSVDYQEKFA 70
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
G +P R GR I R++ RA+R + QI I
Sbjct: 71 STGKIPGGFLKR------EGRLSDYEILISRIVDRAIRPIFPDDYHADTQIAITL----- 119
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
++G L D L + + G ++ + + G ++ E
Sbjct: 120 --------VSGDDEVLPDALAGLAASAALAVSDIPFNGPISEVRVAKIDGKLKINPTPTE 171
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
++ I+ V+ E ++ + A + I + Q +
Sbjct: 172 LEKASLEFIVAG-SLDFILMVE--GEADEIQEEEMLEAMQFAHEEIKRHCQAQIE 223
>gi|317508352|ref|ZP_07966026.1| guanosine pentaphosphate synthetase I/polyribonucleotide
nucleotidyltransferase [Segniliparus rugosus ATCC
BAA-974]
gi|316253350|gb|EFV12746.1| guanosine pentaphosphate synthetase I/polyribonucleotide
nucleotidyltransferase [Segniliparus rugosus ATCC
BAA-974]
Length = 731
Score = 139 bits (350), Expect = 3e-31, Method: Composition-based stats.
Identities = 43/244 (17%), Positives = 82/244 (33%), Gaps = 14/244 (5%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKH 56
R+ GR ++R +S+ GS L + G+T +L TL+ + +
Sbjct: 341 FRIDGRGLREIRPLSVEISPIPRVHGSALFQRGETQILGVTTLDLLKMAQEVDALGPVTK 400
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P STG + + R+ G RAL V+ A I
Sbjct: 401 RHYMHHYNFPPYSTGETGRVGSPKRREIGHGAL----AERALVPVLPDQADFPYAIRQVS 456
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+ + ++G T ++ + ++L ++ + V + G + D
Sbjct: 457 EALGSNGSTSMGSVCASTMSLLAAGVPIKAPVAGIAMGLV-----SGEVNGETKYVTLTD 511
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED+ D+D T + +Q + L AK+ ++ + D
Sbjct: 512 ILGAEDAFGDMDFKVAGTRDF-VTALQLDTKLDGIPSQVLAGALAQAKEARDTILDVIAD 570
Query: 237 VISN 240
I
Sbjct: 571 AIDE 574
>gi|168180709|ref|ZP_02615373.1| polyribonucleotide nucleotidyltransferase [Clostridium botulinum
NCTC 2916]
gi|226949765|ref|YP_002804856.1| polynucleotide phosphorylase/polyadenylase [Clostridium botulinum
A2 str. Kyoto]
gi|254782713|sp|C1FS53|PNP_CLOBJ RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|182668424|gb|EDT80403.1| polyribonucleotide nucleotidyltransferase [Clostridium botulinum
NCTC 2916]
gi|226842894|gb|ACO85560.1| polyribonucleotide nucleotidyltransferase [Clostridium botulinum A2
str. Kyoto]
Length = 702
Score = 139 bits (350), Expect = 3e-31, Method: Composition-based stats.
Identities = 48/243 (19%), Positives = 85/243 (34%), Gaps = 16/243 (6%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHG 57
R GR +++R IS + G+ L G T ++T AT + ++ I
Sbjct: 312 RPDGRSFDEVRPISCEVGILPRTHGTGLFTRGLTQVMTVATLGALGDVQILDGIAEEASK 371
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y S G R+ G RAL ++ I + +
Sbjct: 372 RYMHHYNFPSYSVGEVRPLRGPGRREIGHGAL----AERALEPLIPSEEEFPYTIRLVSE 427
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
V+ ++G T A++ G+ +AL D ++ + + + + I D+
Sbjct: 428 VLSSNGSTSQASVCGSTLALLDAGVPIKRPAAGIAMGLITSDD-------LEKEKVITDI 480
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T+ G I +Q + A S + L AK ++ K+
Sbjct: 481 QGIEDFFGDMDFKVAGTEKG-ITSIQFDTKIAGLSDNCVRDALEGAKKARLHILGKIKEC 539
Query: 238 ISN 240
I
Sbjct: 540 IPE 542
Score = 86.4 bits (212), Expect = 3e-15, Method: Composition-based stats.
Identities = 37/236 (15%), Positives = 82/236 (34%), Gaps = 31/236 (13%)
Query: 12 REISL---TRRVSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKHGWITAEYG 64
R++ + + A + + +GDT ++ A E + + + + G
Sbjct: 12 RKMKVDFGKTGMLSNA--AIFMSYGDTVVMINANASKAPREGIDFFPLSVDYEERLYSVG 69
Query: 65 MLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGG 124
+P R G+ +S R I R LR + QI+ ++ D
Sbjct: 70 KIPGGFIKR------EGKPSDKSILHARSIDRPLRPLFPKGYRNDVQIVNTVLSVEQDNL 123
Query: 125 TRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDST 184
AI G+ +AL S VAA+S G++ G I++ +
Sbjct: 124 PEILAINGSSLALC-------------LSSIPFTTPVAAVSVGLVDGEFIINPTVAQREN 170
Query: 185 IDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
+D T ++ V+ + ++ ++ + +++ Q++ ++
Sbjct: 171 TILDLTVCATKE-RVMMVEAGGQE--IDEETMYSAIMFGFQECKNIVAFQEEAVAK 223
>gi|154507583|ref|ZP_02043225.1| hypothetical protein ACTODO_00063 [Actinomyces odontolyticus ATCC
17982]
gi|153797217|gb|EDN79637.1| hypothetical protein ACTODO_00063 [Actinomyces odontolyticus ATCC
17982]
Length = 235
Score = 139 bits (350), Expect = 3e-31, Method: Composition-based stats.
Identities = 107/224 (47%), Positives = 149/224 (66%)
Query: 16 LTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGNRVK 75
+TR S EGS L++FG+T +L A+ E VP W R++ GW+T EY MLPR+T R
Sbjct: 1 MTRGWSGTGEGSVLIEFGNTRVLCVASFTEGVPRWKRDSGEGWVTGEYSMLPRATEQRSS 60
Query: 76 REAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWV 135
RE+V G+ GGR+QEI R+IGR+LR +VD+SALG I++DCDV++ADGGTRTAAITGA+V
Sbjct: 61 RESVKGKVGGRTQEISRLIGRSLRGIVDVSALGENTIVLDCDVLRADGGTRTAAITGAYV 120
Query: 136 ALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTD 195
AL D + ++ ++VL ++AIS G++ G P++DL Y ED + D N V T
Sbjct: 121 ALADAVSWAKEQGILKPSAKVLTDSISAISVGVIDGTPMLDLPYVEDVRAETDMNVVQTG 180
Query: 196 SGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
SG +EVQG+AE A F++D +L+LA A L + QK +
Sbjct: 181 SGRFIEVQGTAEHAPFNRDELNELLDLATLGNARLAEAQKLALE 224
>gi|116669995|ref|YP_830928.1| polynucleotide phosphorylase/polyadenylase [Arthrobacter sp. FB24]
gi|187470967|sp|A0JUV8|PNP_ARTS2 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|116610104|gb|ABK02828.1| Polyribonucleotide nucleotidyltransferase [Arthrobacter sp. FB24]
Length = 746
Score = 139 bits (350), Expect = 3e-31, Method: Composition-based stats.
Identities = 39/242 (16%), Positives = 83/242 (34%), Gaps = 14/242 (5%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
+R+ GR +R+++ V GS + + G+T ++ TL E+ +
Sbjct: 343 IRIDGRGLTDIRQLTAEVEVLPRVHGSAIFERGETQIMGVTTLNMLKMEQQIDSLSPVTR 402
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P STG + + R+ G RAL V+ I
Sbjct: 403 KRYMHNYNFPPYSTGETGRVGSPKRREIGHGAL----AERALVPVLPSREEFPYAIRQVS 458
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+ + ++G T ++ + +++ + ++ + V G + D
Sbjct: 459 EALSSNGSTSMGSVCASTLSMLNAGVPLKAAVAGIAMGLVSDQ-----VDGQTRYAALTD 513
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED+ D+D T + +Q + A L A++ ++++
Sbjct: 514 ILGAEDAFGDMDFKVAGTSEF-VTAIQLDTKLDGIPASVLAAALKQAREARLHILEVINS 572
Query: 237 VI 238
I
Sbjct: 573 AI 574
Score = 67.9 bits (164), Expect = 1e-09, Method: Composition-based stats.
Identities = 42/238 (17%), Positives = 68/238 (28%), Gaps = 29/238 (12%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGD-THLLTTATLE----EKVPMWIRNTKHGWITAEYGM 65
R I ++K A G+ +V + T LL+ T E + G
Sbjct: 21 RVIRFETGRLAKQAAGAAMVYIDEDTALLSATTAGKHPREGFDFFPLTVDVEERMYAAGR 80
Query: 66 LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125
+P S R GR + R++ R LR QI++ I D
Sbjct: 81 IPGSFFRR------EGRPSTEAILACRLMDRPLRPAFIKGLRNEVQIVVTVLAINPDELY 134
Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185
AI + ++ +++ V A G
Sbjct: 135 DVVAINASSMSTQLSGLPFSGPIGGVRVALV------ADEHGSQWVAFPKHSQLENSVFN 188
Query: 186 DVDANFVMTDSGHIVEVQGSAERATF-----------SQDHFFAMLNLAKDRIADLIK 232
V A V D I+ V+ A ++ +++ L AK I L
Sbjct: 189 MVVAGRVAGDDVAIMMVEAEATDNSWNLIKEQGATAPTEEVVSEGLEAAKPFIKALCD 246
>gi|15827380|ref|NP_301643.1| polynucleotide phosphorylase/polyadenylase [Mycobacterium leprae
TN]
gi|221229857|ref|YP_002503273.1| polynucleotide phosphorylase/polyadenylase [Mycobacterium leprae
Br4923]
gi|81537101|sp|Q9CCF8|PNP_MYCLE RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|254782731|sp|B8ZQJ6|PNP_MYCLB RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|13092930|emb|CAC31235.1| putative polyribonucleotide phosphorylase / guanosine
pentaphosphate synthetase [Mycobacterium leprae]
gi|219932964|emb|CAR70949.1| putative polyribonucleotide phosphorylase / guanosine
pentaphosphate synthetase [Mycobacterium leprae Br4923]
Length = 773
Score = 139 bits (350), Expect = 3e-31, Method: Composition-based stats.
Identities = 45/242 (18%), Positives = 82/242 (33%), Gaps = 10/242 (4%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKH 56
R+ GR +R +S V A GS L + G+T +L TL+ + +
Sbjct: 352 FRIDGRGITDIRALSAEVAVVPRAHGSALFERGETQILGVTTLDMVKMAQQIDSLGPETS 411
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P STG + + R+ G RAL V+ I
Sbjct: 412 KRYMHHYNFPPFSTGETGRVGSPKRREIGHGAL----AERALVPVLPSVEEFPYAIRQVS 467
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+ + ++G T ++ + +AL + ++ + V V + D
Sbjct: 468 EALGSNGSTSMGSVCASTLALLNAGVPLKAPVAGIAMGLVSD-DVEFDGGTERRFVTLTD 526
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED+ D+D T + +Q + L AKD ++++ +
Sbjct: 527 ILGAEDAFGDMDFKCAGTKDF-VTALQLDTKLDGIPSQVLAGALAQAKDARLTILEVMAE 585
Query: 237 VI 238
I
Sbjct: 586 AI 587
>gi|326528505|dbj|BAJ93434.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 726
Score = 139 bits (350), Expect = 3e-31, Method: Composition-based stats.
Identities = 49/243 (20%), Positives = 88/243 (36%), Gaps = 11/243 (4%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56
+R+ GR+ +++R + GS L GDT +L T T + + I
Sbjct: 112 LRVDGRRLDEVRPLYCESSTYPILHGSALFSRGDTQVLCTVTLGAPGDAQRLDSIVGPPT 171
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P S KR ++ R+ G +AL +V+ + ++
Sbjct: 172 KRFMLHYSFPPFSINEVAKRGGLNRREVGHGTL----AEKALLAVLPPEGDFPYTVRVNS 227
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V+ +DG T A++ G +AL D + + + V + + + + D
Sbjct: 228 EVMASDGSTSMASVCGGSMALMDAGIPVREHVAGVSVGLVSEADP--TTGDISSYRILTD 285
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T G I +Q + A D L A+ ++
Sbjct: 286 ILGLEDHLGDMDFKIAGTRRG-ITAIQLDIKPAGIPLDIVCESLEPARKARNQILDRMDQ 344
Query: 237 VIS 239
IS
Sbjct: 345 EIS 347
>gi|75909486|ref|YP_323782.1| polynucleotide phosphorylase/polyadenylase [Anabaena variabilis
ATCC 29413]
gi|123608898|sp|Q3M7Z9|PNP_ANAVT RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|75703211|gb|ABA22887.1| 3' exoribonuclease [Anabaena variabilis ATCC 29413]
Length = 718
Score = 139 bits (350), Expect = 3e-31, Method: Composition-based stats.
Identities = 48/244 (19%), Positives = 90/244 (36%), Gaps = 20/244 (8%)
Query: 1 MRLSGRQENQMREISLTRRVSK-YAEGSCLVKFGDTHLLTTATLE-----EKVPMWIRNT 54
+R+ GR+ +Q+R +S V GS L G T +L+ TL + + ++
Sbjct: 322 VRVDGRKLDQVRPVSSQVGVLPKRVHGSGLFNRGLTQVLSACTLGTPGDAQNLNDDLQTD 381
Query: 55 KHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIII 114
+ Y P S G A R+ G RA+ V+ I +
Sbjct: 382 QSKRYLHHYNFPPFSVGETKPLRAPGRREIGHGAL----AERAILPVLPPKEQFPYVIRV 437
Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPI 174
+V+ ++G T ++ G+ +AL D + + + + +G +
Sbjct: 438 VSEVLSSNGSTSMGSVCGSTLALMDAGVPILKPVSGAAMGLIKEGDEVRVLTD------- 490
Query: 175 VDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
+ ED D+D TD+G I +Q + + S + ++ AKD ++
Sbjct: 491 --IQGIEDFLGDMDFKVAGTDAG-ITALQMDMKISGLSLEVIAQAIHQAKDARLHILDKM 547
Query: 235 KDVI 238
I
Sbjct: 548 LQTI 551
Score = 102 bits (255), Expect = 3e-20, Method: Composition-based stats.
Identities = 50/235 (21%), Positives = 87/235 (37%), Gaps = 26/235 (11%)
Query: 10 QMREISLTRRV-SKYAEGSCLVKFGDTHLLTTAT---LEEKVPMWIRNTKHGWITAEYGM 65
R+I L + + A GS L++ GDT +L TAT E + + G
Sbjct: 11 DGRDIRLKVGLLAPQAGGSVLIESGDTAVLVTATRSAGREGIDFLPLTVDYEERLYAAGR 70
Query: 66 LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125
+P R GR ++ R+I R LR + QI+ +
Sbjct: 71 IPGGIMRR------EGRPPEKTILTSRLIDRPLRPLFPSWLRDDLQIVALTMSMDEQVPP 124
Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185
A+TGA +A G +AA+ G++ I++ Y E
Sbjct: 125 DVLAVTGASIATLIAKI-------------PFNGPMAAVRVGLVGDDFIINPTYAEIEAG 171
Query: 186 DVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
D+D + G ++ V+ A + + ++ + + DLIK Q D+++
Sbjct: 172 DLDLVVAGSPHG-VIMVEAGANQ--LPERDIIEAIDFGYEAVRDLIKAQLDLVAE 223
>gi|332667455|ref|YP_004450243.1| polyribonucleotide nucleotidyltransferase [Haliscomenobacter
hydrossis DSM 1100]
gi|332336269|gb|AEE53370.1| Polyribonucleotide nucleotidyltransferase [Haliscomenobacter
hydrossis DSM 1100]
Length = 777
Score = 139 bits (350), Expect = 3e-31, Method: Composition-based stats.
Identities = 47/239 (19%), Positives = 88/239 (36%), Gaps = 12/239 (5%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+RL GR +++R I GS + G+T LT+ TL K + +
Sbjct: 324 IRLDGRGPSEIRHIWSEVDYLPSTHGSAIFTRGETQALTSLTLGTKTDEQMIDNSQEMYH 383
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
++ + G V S G R + R+LR V+ + I D+++
Sbjct: 384 EKFILHYNFPGYSVGEVKPSRGPGRREVGHANLAARSLRKVMPADL--PYTVRIVSDILE 441
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
++G + A + +AL D ++ + + + +G AI +
Sbjct: 442 SNGSSSMATVCAGTLALMDAGIKIKAPVSGIAMGMIKEGDRVAILSD---------ILGD 492
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
ED+ D+D T++G I Q + D L+ A++ ++ K I
Sbjct: 493 EDALGDMDFKVTGTENG-ITGCQMDIKIDGLPYDLLVRALSQAREGRLHILNEMKKTIE 550
Score = 97.6 bits (241), Expect = 1e-18, Method: Composition-based stats.
Identities = 41/254 (16%), Positives = 83/254 (32%), Gaps = 42/254 (16%)
Query: 3 LSGRQENQMREISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT----KHG 57
GR E+ + ++ A+GS +V+ G+T + AT +++ +
Sbjct: 14 PDGR------EVIIETGKLATQADGSVVVRCGNTMIFAVATSDKEARAGQDFFPLSVDYQ 67
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
A G +P + R + R++ RA+R + + QI+
Sbjct: 68 EKFASSGRIPGNFFRR------ETKLSDYEILCSRLVDRAIRPLFPNHYMNDTQIM---- 117
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
I+ + D + + +G ++ + + G +++
Sbjct: 118 ---------INLISVEKNEMPDAFVALAASAALSVSDIPFQGPISEVRVARINGEFVINP 168
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ--- 234
T D+D T I V+G A+ ++ L +A + I Q
Sbjct: 169 GKEALKTADIDLIVAATLQD-ITMVEGEAKE--MDEESMIDALRIAHEAIKVQCHAQIAL 225
Query: 235 ------KDVISNEV 242
K +I EV
Sbjct: 226 AQLVGDKALIKREV 239
>gi|119960529|ref|YP_947337.1| polynucleotide phosphorylase/polyadenylase [Arthrobacter aurescens
TC1]
gi|187470966|sp|A1R525|PNP_ARTAT RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|119947388|gb|ABM06299.1| putative guanosine pentaphosphate synthetase/polyribonucleotide
nucleotidyltransferase alpha chain [Arthrobacter
aurescens TC1]
Length = 750
Score = 139 bits (350), Expect = 3e-31, Method: Composition-based stats.
Identities = 39/242 (16%), Positives = 83/242 (34%), Gaps = 14/242 (5%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
+R+ GR +R+++ V GS + + G+T ++ TL E+ +
Sbjct: 343 VRIDGRGLTDIRQLTAEVEVLPRVHGSAIFERGETQIMGVTTLNMLKMEQQIDSLSPVTR 402
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P STG + + R+ G RAL V+ I
Sbjct: 403 KRYMHNYNFPPYSTGETGRVGSPKRREIGHGAL----AERALVPVLPTREEFPYAIRQVS 458
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+ + ++G T ++ + +++ + ++ + V G + D
Sbjct: 459 EALGSNGSTSMGSVCASTLSMLNAGVPLKAAVAGIAMGLVSDQ-----VDGQTRYAALTD 513
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED+ D+D T + +Q + A L A++ ++++
Sbjct: 514 ILGAEDAFGDMDFKVAGTSEF-VTAIQLDTKLDGIPASVLAAALKQAREARLHILEVINA 572
Query: 237 VI 238
I
Sbjct: 573 AI 574
Score = 66.4 bits (160), Expect = 3e-09, Method: Composition-based stats.
Identities = 39/238 (16%), Positives = 70/238 (29%), Gaps = 29/238 (12%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGD-THLLTTATLEEKV----PMWIRNTKHGWITAEYGM 65
R I ++K A G+ +V + T LL+ T ++ + G
Sbjct: 21 RVIRFETGRLAKQAAGASMVYIDEDTALLSATTAGKQPREGFDFFPLTVDVEERMYAAGR 80
Query: 66 LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125
+P S R GR + R++ R LR QI++ I D
Sbjct: 81 IPGSFFRR------EGRPSTEAILACRLMDRPLRPAFVKGLRNEVQIVVTVLAINPDELY 134
Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185
AI + ++ +++ + A G
Sbjct: 135 DVVAINASSMSTQLSGLPFSGPIGGVRVALI------ADEQGSQWVAFPKHSQLENAVFN 188
Query: 186 DVDANFVMTDSGHIVEVQGSAERATF-----------SQDHFFAMLNLAKDRIADLIK 232
V A + D I+ V+ A ++ +++ L AK I L +
Sbjct: 189 MVVAGRIAGDDVAIMMVEAEATDNSWNLIKEQGATAPTEEVVSEGLEAAKPFIKALCE 246
>gi|224438200|ref|ZP_03659135.1| polynucleotide phosphorylase/polyadenylase [Helicobacter cinaedi
CCUG 18818]
gi|313144645|ref|ZP_07806838.1| polynucleotide phosphorylase/polyadenylase [Helicobacter cinaedi
CCUG 18818]
gi|313129676|gb|EFR47293.1| polynucleotide phosphorylase/polyadenylase [Helicobacter cinaedi
CCUG 18818]
Length = 704
Score = 139 bits (349), Expect = 3e-31, Method: Composition-based stats.
Identities = 49/243 (20%), Positives = 89/243 (36%), Gaps = 23/243 (9%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW------IRNT 54
+R GR +R IS+ + +A GS L G T L +ATL + +N
Sbjct: 320 IRADGRGLKDIRPISIETNILPFAHGSVLFTRGQTQALVSATLGSENDAQSYEMLGSKNA 379
Query: 55 KHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIII 114
Y S G +V R+ G +R + +L S R I +
Sbjct: 380 LKRRFLFHYNFPGFSVGEASMIGSVGRRELGHGNLARRALESSLTSQ-------DRTIRL 432
Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPI 174
++++++G + A++ G +AL C ++ + V +G AI
Sbjct: 433 VSEILESNGSSSMASVCGGSLALCACGVQVDSLIAGVAMGLVTQGEKYAILTD------- 485
Query: 175 VDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
+ ED D+D G I +Q + S++ L AK+ ++ +
Sbjct: 486 --ISGLEDHDGDMDFKVAGGYKG-ISAMQMDIKLGGISKEILEESLLQAKEAREQILGIM 542
Query: 235 KDV 237
++
Sbjct: 543 EEA 545
Score = 65.3 bits (157), Expect = 8e-09, Method: Composition-based stats.
Identities = 34/213 (15%), Positives = 60/213 (28%), Gaps = 17/213 (7%)
Query: 20 VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGNRVKREAV 79
++K A GS L + G + LL + EE E
Sbjct: 20 MAKAANGSVLYQNGGSVLLASVCAEENNKYDDDFLPLSVQYIEKAYASNKFP--PGFVKR 77
Query: 80 SGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVALHD 139
G+ R+I R LR + I+I + A+ A AL+
Sbjct: 78 EGKPSEFEILTSRLIDRTLRPLFPKGYKHITSIVIWVLSYDGKSDLQLNALNAASAALYV 137
Query: 140 CLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHI 199
+E V + G G +++ + S ++D +
Sbjct: 138 SNLPLESLK---------DNAVCGVRIGRKNGAFVLNPTMEQMSESELDLFVSGRGD-EL 187
Query: 200 VEVQGSA-----ERATFSQDHFFAMLNLAKDRI 227
+ ++ + S+ L AK I
Sbjct: 188 LMIEMKSIRSEKGANELSERDMILALESAKSYI 220
>gi|126660748|ref|ZP_01731846.1| polynucleotide phosphorylase/polyadenylase [Cyanothece sp. CCY0110]
gi|126617989|gb|EAZ88760.1| polynucleotide phosphorylase/polyadenylase [Cyanothece sp. CCY0110]
Length = 715
Score = 139 bits (349), Expect = 3e-31, Method: Composition-based stats.
Identities = 45/246 (18%), Positives = 86/246 (34%), Gaps = 20/246 (8%)
Query: 1 MRLSGRQENQMREISLTRRVS-KYAEGSCLVKFGDTHLLTTATLE-----EKVPMWIRNT 54
+R+ GR+ +++R IS + GS L G T + + ATL + + +
Sbjct: 323 IRVDGRKLDEVRPISCRVGLLPPRVHGSALFTRGLTQVFSLATLGTPGDAQDLGDDLHPE 382
Query: 55 KHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIII 114
Y P S G + R+ G RA+ V+ + +
Sbjct: 383 DEKRYLHHYNFPPFSVGETKPLRSPGRREIGHGAL----AERAITPVLPPQDEFPYVVRV 438
Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPI 174
+V+ ++G T ++ G+ +AL D + + + + +G +
Sbjct: 439 VSEVVSSNGSTSMGSVCGSTLALMDAGVPITKPVSGAAMGLIREGKEV---------RIL 489
Query: 175 VDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
D+ ED D+D TD+G I +Q + S D + A +++
Sbjct: 490 TDIQGIEDFLGDMDFKVAGTDAG-ITALQMDMKITGLSMDVVAKAIEQALPARLHILEKM 548
Query: 235 KDVISN 240
I
Sbjct: 549 LGAIDQ 554
Score = 102 bits (254), Expect = 5e-20, Method: Composition-based stats.
Identities = 51/235 (21%), Positives = 88/235 (37%), Gaps = 26/235 (11%)
Query: 10 QMREISLTRRV-SKYAEGSCLVKFGDTHLLTTAT---LEEKVPMWIRNTKHGWITAEYGM 65
R+I L + + A G+ L++ GDT +L TAT E + + G
Sbjct: 11 DGRDIRLKLGLLAPQAGGAVLIQSGDTAVLVTATTSKGREGIDFLPLTVDYEERLYAAGR 70
Query: 66 LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125
+P R GR R+ I R+I R LR + QII + +
Sbjct: 71 IPGGFLRR------EGRPPERAILISRLIDRPLRPLFPNWWRDEIQIIATTLSMDEEVPP 124
Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185
A+TGA +A+ +AA+ G++ I++ Y E +
Sbjct: 125 DVLAVTGASIAVIQAQIPFYG-------------PMAAVRVGLIGDDFIINPTYREVESG 171
Query: 186 DVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
D+D + G +V V+ A + + ++ + + DLI Q D++
Sbjct: 172 DLDLVVAGSPDG-VVMVEAGANQ--LPEQDIIEAIDFGYEAVRDLIGAQYDIMEE 223
>gi|289644629|ref|ZP_06476695.1| ribonuclease PH [Frankia symbiont of Datisca glomerata]
gi|289505557|gb|EFD26590.1| ribonuclease PH [Frankia symbiont of Datisca glomerata]
Length = 234
Score = 139 bits (349), Expect = 3e-31, Method: Composition-based stats.
Identities = 102/226 (45%), Positives = 141/226 (62%), Gaps = 7/226 (3%)
Query: 14 ISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGNR 73
+++TR +AEGS L++FG T +L A++ E VP W + + GW+TAEY MLPR+T R
Sbjct: 1 MNITRGWQDHAEGSALIEFGRTRVLCAASVTEGVPRWRKGSGLGWVTAEYSMLPRATNTR 60
Query: 74 VKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGA 133
RE+V GR GGR+ EI R+IGR+LR+ +DL LG I IDCDV+ ADGGTRTA+ITGA
Sbjct: 61 NDRESVRGRIGGRTHEISRLIGRSLRTCIDLKILGENTIAIDCDVLVADGGTRTASITGA 120
Query: 134 WVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVM 193
+VAL D + + VAA+S G++ G P++DL Y EDS D D N +
Sbjct: 121 YVALSDACGWLGRPDALIRS-------VAAVSVGVVAGRPLLDLAYDEDSGADTDMNVIC 173
Query: 194 TDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
T G VEVQG+AE F + +L+LA A L ++Q+ ++
Sbjct: 174 TGDGGFVEVQGTAEGLPFDRAMLDQLLDLAVGGCARLTEVQRAALA 219
>gi|222823533|ref|YP_002575107.1| polyribonucleotide nucleotidyltransferase [Campylobacter lari
RM2100]
gi|257096671|sp|B9KFM1|PNP_CAMLR RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|222538755|gb|ACM63856.1| polyribonucleotide nucleotidyltransferase [Campylobacter lari
RM2100]
Length = 702
Score = 139 bits (349), Expect = 3e-31, Method: Composition-based stats.
Identities = 49/242 (20%), Positives = 81/242 (33%), Gaps = 22/242 (9%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R GR +R+I + + A GSCL G T L ATL + +
Sbjct: 322 RADGRGLKDVRKIDIETNILPSAHGSCLFTRGQTQALVVATLGNDNDAQMSDMLTEKNPI 381
Query: 62 E------YGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115
Y S G +A R+ G RAL VD + I +
Sbjct: 382 CEKFMVNYNFPGFSVGEASPIKAPGRRELGHGNL----AKRALYPSVDADYIH--TIRLV 435
Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIV 175
++++++G + A + G +AL E + V + AI ++
Sbjct: 436 SEILESNGSSSMATVCGGALALRAAGVKSEKLVAGVAMGLVFEEEKYAILTDIM------ 489
Query: 176 DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
ED D+D + G I +Q + Q L AK+ ++ L +
Sbjct: 490 ---GLEDHDGDMDFKVAGSHDG-ITALQMDIKLGGIEQKVLQEALYQAKEARGYILNLMQ 545
Query: 236 DV 237
+
Sbjct: 546 EA 547
Score = 70.6 bits (171), Expect = 2e-10, Method: Composition-based stats.
Identities = 36/230 (15%), Positives = 71/230 (30%), Gaps = 32/230 (13%)
Query: 20 VSKYAEGSCLVKFGDTHLLTTATLEEKV---PMWIRNTKHGWITAEYGMLPRSTGNRVKR 76
V+K A G+ L++ + +L T EEK+ ++ G +P R
Sbjct: 19 VAKQAAGAVLMQEKNAVVLATVAREEKMVEEDFLPLTVQYIEKAYAAGKIPGGYVKR--- 75
Query: 77 EAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVA 136
+ G R+I R+LR + QI++ + + ++ A VA
Sbjct: 76 ---ETKPGDSETLSARIIDRSLRPLFPKGYAYPTQIVVMVLSADPEVDLQVMSLNAASVA 132
Query: 137 LHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDS 196
L+ +K V + G + +++ E +D
Sbjct: 133 LY-------------LSDIPIKAPVCGVRIGRINNEFVLNPSNSELKNSTLDLYVAGVKD 179
Query: 197 GHIVEVQGSAE---------RATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
++ ++ A S+D L+ A I +
Sbjct: 180 -ELLMIEMRALSNKKDNQHCMNELSEDDTLKALDFASSAILRGSNEYEKA 228
>gi|152993469|ref|YP_001359190.1| polynucleotide phosphorylase/polyadenylase [Sulfurovum sp. NBC37-1]
gi|187611305|sp|A6QBH4|PNP_SULNB RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|151425330|dbj|BAF72833.1| polyribonucleotide nucleotidyltransferase [Sulfurovum sp. NBC37-1]
Length = 729
Score = 139 bits (349), Expect = 3e-31, Method: Composition-based stats.
Identities = 53/243 (21%), Positives = 89/243 (36%), Gaps = 22/243 (9%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWI------RNT 54
+R GR +++R I++ + GSCL G T L TATL +K + +NT
Sbjct: 344 IRADGRGLDEVRPITIETNILPSVHGSCLFTRGQTQALVTATLGDKKDAQMFELITDKNT 403
Query: 55 KHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIII 114
+ Y S G A R+ G RAL V+ ++ G I +
Sbjct: 404 QSENFMVHYNFPGYSVGEAKFIGAPGRRELGHGNL----AKRALEPVIPINYDG--TIRL 457
Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPI 174
+V++++G + A I G +AL M + + V G A+ ++
Sbjct: 458 VSEVLESNGSSSMATICGGALALRAAEVDMVELVAGIAMGLVTDGERVAVLTDIM----- 512
Query: 175 VDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
ED D+D T +G I +Q + L A ++ L
Sbjct: 513 ----GLEDHDGDMDFKIAGTRNG-ITALQMDIKLGGIDLITLKVALEKAAQGKDHILDLM 567
Query: 235 KDV 237
++
Sbjct: 568 EEA 570
Score = 54.1 bits (128), Expect = 2e-05, Method: Composition-based stats.
Identities = 23/248 (9%), Positives = 65/248 (26%), Gaps = 51/248 (20%)
Query: 20 VSKYAEGSCLVKFGDTHLLTTATLEE---KVPMWIRNTKHGWITAEYGMLPRSTGNRVKR 76
++K A G+ + + G L+ ++E + ++ + +P R
Sbjct: 22 IAKQASGAVMYRQGKAVLIAAVAVDEKAVEEDFLPLTVQYMERSYAAAKIPGGFIKR--- 78
Query: 77 EAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVA 136
+ G R++ R+LR + ++
Sbjct: 79 ---ETKPGDFETLTSRIVDRSLRPLFPKGFYYPVT-------------ISVMVVSSDSEV 122
Query: 137 LHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDS 196
+ + ++ +AA+ G + +++ + +D V ++
Sbjct: 123 DMQVAALHAANAALYVSDISVQRSIAAVRVGKIEDELVLNPTLSQQDESVLDLLVVGSEQ 182
Query: 197 GHIVEVQGSA----------------------------ERATFSQDHFFAMLNLAKDRIA 228
I+ ++ A E + + A I
Sbjct: 183 D-IIMIEMRAIASEKIDDIEMDMIDPMMGGVPLILEHQECNEVDNEALVDAIAFAAKAIE 241
Query: 229 DLIKLQKD 236
+ + +
Sbjct: 242 EASAIYEK 249
>gi|294790571|ref|ZP_06755729.1| polyribonucleotide nucleotidyltransferase [Scardovia inopinata
F0304]
gi|294458468|gb|EFG26821.1| polyribonucleotide nucleotidyltransferase [Scardovia inopinata
F0304]
Length = 953
Score = 139 bits (349), Expect = 4e-31, Method: Composition-based stats.
Identities = 48/241 (19%), Positives = 85/241 (35%), Gaps = 14/241 (5%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +R +S V GS L + G+T +L TL E+ +
Sbjct: 346 RIDGRGLRDIRTLSAEVDVVPRVHGSALFQRGETQILGVTTLNMLKMEQTTDALSGPSTK 405
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y M P STG + + R+ G RAL V+ I +
Sbjct: 406 RYMHNYEMPPYSTGETGRVGSPKRREVGHGAL----AERALIPVLPSREKFPYAIRQVSE 461
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
I ++G T ++ + ++L D ++ + V + G + + D+
Sbjct: 462 AIGSNGSTSMGSVCASTMSLLDAGVPLKAPVAGIAMGLV-----SGEVNGQMVYKTLTDI 516
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED+ D+D T I +Q + D A L A + ++++ +
Sbjct: 517 LGAEDAFGDMDFKVAGTSEF-ITALQLDTKLDGIPADILAAALRQAYEARTTILEVINEC 575
Query: 238 I 238
I
Sbjct: 576 I 576
Score = 66.8 bits (161), Expect = 3e-09, Method: Composition-based stats.
Identities = 36/242 (14%), Positives = 69/242 (28%), Gaps = 32/242 (13%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGD-THLLTTATLE----EKVPMWIRNTKHGWITAEYGM 65
R + +++ A+G+ D + +L+T T E + G
Sbjct: 21 RVLRFETGRLAQQADGAVAAYLDDDSMILSTTTAGSSPKENFDFFPLTVDVEEKMYAAGK 80
Query: 66 LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125
+P S R GR + R+I R LR + + Q++ I D
Sbjct: 81 IPGSFFRR------EGRPSNEAILACRIIDRPLRPLFPHTLRNEVQVVETVLSISPDDSY 134
Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185
A+ A + E + +L+ + VA + G
Sbjct: 135 DMIAMNAASASTMISGLPFEGPVSGVRLALIDDQWVAFPRWSERERAVFELVVAGR---- 190
Query: 186 DVDANFVMTDSGHIVEVQGSAERATF-----------SQDHFFAMLNLAKDRIADLIKLQ 234
+ I ++ A + + + L AK I + + Q
Sbjct: 191 -----VLDNGDVAIAMIEAGAGKNAWKLIYDEGMTKPDEVVVAGGLEAAKPFIKTICEAQ 245
Query: 235 KD 236
+
Sbjct: 246 NE 247
>gi|47847669|dbj|BAD21450.1| putative polyribonucleotide nucleotidyltransferase [Oryza sativa
Japonica Group]
Length = 982
Score = 139 bits (349), Expect = 4e-31, Method: Composition-based stats.
Identities = 50/244 (20%), Positives = 89/244 (36%), Gaps = 11/244 (4%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56
+R+ GRQ +++R + GS L GDT +L T T + + I
Sbjct: 378 LRVDGRQLDEVRPLYCESSTYPILHGSALFSRGDTQVLCTVTLGAPGDAQRLDSIVGPPT 437
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P S KR ++ R+ G +AL +V+ + ++
Sbjct: 438 KRFMLHYSFPPFSINEVAKRGGLNRREVGHGTL----AEKALLAVLPPEGEFPYTVRVNS 493
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V+ +DG T A++ G +AL D + + + V + + + + D
Sbjct: 494 EVMASDGSTSMASVCGGSMALMDAGIPVREHVAGVSVGLVSEVDQ--TTGDISSYRILTD 551
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T G I +Q + A D L A+ ++
Sbjct: 552 ILGLEDHLGDMDFKIAGTRRG-ITAIQLDIKPAGIPLDIICESLEPARKARNQILDRMDQ 610
Query: 237 VISN 240
IS+
Sbjct: 611 EISS 614
Score = 80.3 bits (196), Expect = 2e-13, Method: Composition-based stats.
Identities = 34/232 (14%), Positives = 71/232 (30%), Gaps = 15/232 (6%)
Query: 6 RQENQM--REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAE 62
R+E ++ R IS ++++A GS ++ DTH+L+T + E
Sbjct: 62 REEFEIGGRVISFETGKMARFANGSVVISMDDTHVLSTVAAAKSSEPVRDFLPLTVDYQE 121
Query: 63 YGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQAD 122
R + ++ R+I R +R + Q++
Sbjct: 122 KQYAQGVIPTTYMRREGAPKEREL--LCGRIIDRPIRPLFPPGFYHEVQVM-------NA 172
Query: 123 GGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGED 182
I+ D + + G + I G + G +++ E
Sbjct: 173 TIIMVNVISSDGKQDPDVMAANASSAALMLSDIPWNGPIGVIRVGRIDGNFVLNPTVDEL 232
Query: 183 STIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
D++ + + + + A ++ A + LA I Q
Sbjct: 233 GLSDLNLVYACSRDKTL-MIDVQARE--ITERDLQAGMKLAHAEAVKCINPQ 281
>gi|171778426|ref|ZP_02919584.1| hypothetical protein STRINF_00435 [Streptococcus infantarius subsp.
infantarius ATCC BAA-102]
gi|171282827|gb|EDT48251.1| hypothetical protein STRINF_00435 [Streptococcus infantarius subsp.
infantarius ATCC BAA-102]
Length = 730
Score = 139 bits (349), Expect = 4e-31, Method: Composition-based stats.
Identities = 43/242 (17%), Positives = 80/242 (33%), Gaps = 18/242 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56
+R GR+ +++R + GS L G T L+ T E ++ + +
Sbjct: 317 IRPDGRRIDEIRPLDAEIDFLPKIHGSGLFTRGQTQALSVLTLAPMGETQIVDGLGDEYK 376
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y S G + A R+ G RAL V+ I +
Sbjct: 377 KRFLHHYNFPQFSVGETGRYGAPGRREIGHGALG----ERALAQVLPSLEEFPYAIRLVA 432
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V++++G + A+I +AL ++ + + + D
Sbjct: 433 EVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISD---------GSNYTILTD 483
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T G I +Q + + L AK +++ L +
Sbjct: 484 IQGLEDHFGDMDFKVAGTREG-ITALQMDIKIEGITPQILKEALAQAKKARFEILDLIEA 542
Query: 237 VI 238
I
Sbjct: 543 TI 544
Score = 106 bits (264), Expect = 3e-21, Method: Composition-based stats.
Identities = 39/232 (16%), Positives = 82/232 (35%), Gaps = 26/232 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKV---PMWIRNTKHGWITAEYGMLP 67
R + V+K A G+ ++++G++ +L+ A + +K+ + + G P
Sbjct: 13 RPFVVEIGQVAKQANGAAVIRYGESTVLSAAVMSKKMSTGDFFPLQVNYEEKMYAAGKFP 72
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R GR + R+I R +R + Q+I D
Sbjct: 73 GGFNKR------EGRPTTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDEDASAPM 126
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
AA+ G+ +A G +A + + G I++ + +
Sbjct: 127 AAMFGSSLA-------------LSISDIPFNGPIAGVQVAYIDGEFIINPSAEQKEASLL 173
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
+ T I V+ A+ S+D L + + +LI Q+++++
Sbjct: 174 ELTVAGTKE-AINMVESGAKE--LSEDIMLEALLKGHEAVQELIAFQEEIVA 222
>gi|282889646|ref|ZP_06298186.1| hypothetical protein pah_c003o034 [Parachlamydia acanthamoebae str.
Hall's coccus]
gi|281500473|gb|EFB42752.1| hypothetical protein pah_c003o034 [Parachlamydia acanthamoebae str.
Hall's coccus]
Length = 694
Score = 139 bits (349), Expect = 4e-31, Method: Composition-based stats.
Identities = 41/241 (17%), Positives = 85/241 (35%), Gaps = 18/241 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKH 56
+R GR +R I + + + A GS L G+T ++ TL + +
Sbjct: 315 VRSDGRTSINIRPIDIEQGILPRAHGSSLFTRGETQSVSVCTLGGESMAQRFEDLDGEGS 374
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
+Y P S G + + R+ G + RAL++++ I ++
Sbjct: 375 RTFYLQYFFPPFSVGEVGRIGSPGRREVGHGKL----AERALQAILPPKEAFPYTIRLES 430
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
++ +++G + A + G +A+ + ++ + +L+ I
Sbjct: 431 NITESNGSSSMATVCGGCLAMMEAGVPVKRPVAGIAMGLILENERFIILSD--------- 481
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED+ D+D G I Q + + A L AK ++ +
Sbjct: 482 ILGIEDALGDMDFKITGDAEG-ITAFQMDIKVEGITPSIMKAALEQAKKGRIHILGKMLE 540
Query: 237 V 237
V
Sbjct: 541 V 541
Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats.
Identities = 33/221 (14%), Positives = 67/221 (30%), Gaps = 19/221 (8%)
Query: 13 EISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG 71
EI +++ A G+ LV+ G+T L TA + + +
Sbjct: 14 EIVFETGKIARQANGAVLVRSGETILFNTACADYDLAPGEDFLPLRVDYQ--EKFSSAGK 71
Query: 72 NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAIT 131
GR + + R+I R LR + + Q++ AI
Sbjct: 72 TVSGFIKREGRPSEKETLVSRLIDRPLRPMFENGYYNETQVLSYVWSYDGVNAPEPLAIC 131
Query: 132 GAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANF 191
GA A L V A+ G++ G +V+ +D
Sbjct: 132 GASAA-------------LVISDIPLIKPVGAVRVGLIGGKFVVNPTVEHQKKSKLDLIL 178
Query: 192 VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
T+ ++ ++ +++ + + I + +
Sbjct: 179 AGTED-AVLMIE--GYCDFLTEEQILEAIEIGHQGIKAICE 216
>gi|94993180|ref|YP_601279.1| polynucleotide phosphorylase/polyadenylase [Streptococcus pyogenes
MGAS2096]
gi|123382250|sp|Q1J9S6|PNP_STRPB RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|94546688|gb|ABF36735.1| Polyribonucleotide nucleotidyltransferase [Streptococcus pyogenes
MGAS2096]
Length = 701
Score = 139 bits (349), Expect = 4e-31, Method: Composition-based stats.
Identities = 43/244 (17%), Positives = 81/244 (33%), Gaps = 18/244 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56
+R GR+ +++R + GS L G T L+ T E ++ +
Sbjct: 308 IRPDGRKIDEIRPLDAVVDFLPKVHGSGLFTRGQTQALSILTLAPMGETQIIDGLAPEYK 367
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y S G + A R+ G RAL V+ I +
Sbjct: 368 KRFLHHYNFPQYSVGETGRYGAAGRREIGHGALG----ERALEQVLPSLEEFPYAIRLVA 423
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V++++G + A+I +AL ++ + + + D
Sbjct: 424 EVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISD---------GTNYTVLTD 474
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T G I +Q + A + L AK +++ + +
Sbjct: 475 IQGLEDHFGDMDFKVAGTREG-ITALQMDIKIAGITPQILEEALAQAKKARFEILDVIEA 533
Query: 237 VISN 240
I+
Sbjct: 534 TIAE 537
Score = 103 bits (257), Expect = 2e-20, Method: Composition-based stats.
Identities = 42/231 (18%), Positives = 82/231 (35%), Gaps = 26/231 (11%)
Query: 13 EISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKV---PMWIRNTKHGWITAEYGMLPR 68
+ + V+K A G+ +V++GD+ +LT A + +K+ + + G P
Sbjct: 5 PLVVEVGQVAKQANGATVVRYGDSTVLTAAVMSKKMATGDFFPLQVNYEEKMYAAGKFPG 64
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
R GR + R+I R +R + Q+I + A
Sbjct: 65 GFMKR------EGRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDENASAPMA 118
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+ G+ +A G +A + G + G I++ D + ++
Sbjct: 119 AMFGSSLA-------------LSISDIPFNGPIAGVQVGYIDGEFIINPDKEQMEASLLE 165
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
+ I V+ A+ S+D L I +LI Q+ +++
Sbjct: 166 LTVAGSKE-AINMVESGAKE--LSEDIMLEALLKGHQAIQELIAFQEQIVA 213
>gi|2342619|emb|CAB11392.1| guanosine pentaphosphate synthetase/ polyribonucleotide
nucleotidyltransferase [Mycobacterium leprae]
Length = 777
Score = 139 bits (349), Expect = 4e-31, Method: Composition-based stats.
Identities = 45/242 (18%), Positives = 82/242 (33%), Gaps = 10/242 (4%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKH 56
R+ GR +R +S V A GS L + G+T +L TL+ + +
Sbjct: 356 FRIDGRGITDIRALSAEVAVVPRAHGSALFERGETQILGVTTLDMVKMAQQIDSLGPETS 415
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P STG + + R+ G RAL V+ I
Sbjct: 416 KRYMHHYNFPPFSTGETGRVGSPKRREIGHGAL----AERALVPVLPSVEEFPYAIRQVS 471
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+ + ++G T ++ + +AL + ++ + V V + D
Sbjct: 472 EALGSNGSTSMGSVCASTLALLNAGVPLKAPVAGIAMGLVSD-DVEFDGGTERRFVTLTD 530
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED+ D+D T + +Q + L AKD ++++ +
Sbjct: 531 ILGAEDAFGDMDFKCAGTKDF-VTALQLDTKLDGIPSQVLAGALAQAKDARLTILEVMAE 589
Query: 237 VI 238
I
Sbjct: 590 AI 591
>gi|32490971|ref|NP_871225.1| polynucleotide phosphorylase/polyadenylase [Wigglesworthia
glossinidia endosymbiont of Glossina brevipalpis]
gi|81741772|sp|Q8D2Y0|PNP_WIGBR RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|25166177|dbj|BAC24368.1| pnp [Wigglesworthia glossinidia endosymbiont of Glossina
brevipalpis]
Length = 705
Score = 139 bits (349), Expect = 4e-31, Method: Composition-based stats.
Identities = 42/243 (17%), Positives = 85/243 (34%), Gaps = 18/243 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVP----MWIRNTKHG 57
R+ GR E+ +R + + + GS L G+T L T TL + + K
Sbjct: 315 RIDGRTEDMVRNLDIHLGILPRTHGSSLFTRGETQALVTTTLGTERDAQNIDDLVGDKID 374
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P G + R+ G + R + +V+ I I +
Sbjct: 375 RFLFHYNFPPYCVGEVGIISSPKRREIGHGKL----AKRGMLAVMPDIDKFPYTIRIVSE 430
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ GA ++L D + + + + + +
Sbjct: 431 ITESNGSSSMASVCGASLSLMDAGVPISSSVAGIAMGLIKEKDKFVVLTD---------I 481
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D + T G + +Q + + + L+ AK+ +++ V
Sbjct: 482 LGDEDYLGDMDFKVMGTREG-VTALQMDIKIEGITSEILQVSLDKAKNARINILNEMDKV 540
Query: 238 ISN 240
I
Sbjct: 541 IKK 543
Score = 82.2 bits (201), Expect = 5e-14, Method: Composition-based stats.
Identities = 31/224 (13%), Positives = 72/224 (32%), Gaps = 27/224 (12%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEK----VPMWIRNTKHGWITAEYGMLPR 68
+++ +++ A + +V+ DT + T ++K + + T G P
Sbjct: 16 VTIETGMIARQATSAVMVRMDDTSVFVTVVADKKEKLGQKFFPLTVNYQERTYSIGRFPG 75
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
R GR + R+I R++R + + QII +
Sbjct: 76 GFFRR------EGRPNENEVLVSRLIDRSVRPLFPKNFFNDIQIIATVMSVNPQVNPDIV 129
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
+I GA A K + + G + I++ E +D
Sbjct: 130 SIIGASAA-------------LSLSGLPFKCPIGSSRIGYIDNKYILNPTTSELIDSKLD 176
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
+ + ++ V+ S+ + + + ++ +I+
Sbjct: 177 MIVSGSSN-AVLMVESSSNI--LQEKNILEAILFGNEQNKIVIE 217
>gi|33866429|ref|NP_897988.1| polynucleotide phosphorylase/polyadenylase [Synechococcus sp. WH
8102]
gi|81574045|sp|Q7U515|PNP_SYNPX RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|33633207|emb|CAE08412.1| polyribonucleotide nucleotidyltransferase [Synechococcus sp. WH
8102]
Length = 721
Score = 139 bits (349), Expect = 4e-31, Method: Composition-based stats.
Identities = 44/242 (18%), Positives = 89/242 (36%), Gaps = 19/242 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKY-AEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
R+ GR +++R IS V GS L + G T +L+TATL + + + +
Sbjct: 323 RVDGRALDEVRAISALAGVLPRRVHGSGLFQRGLTQVLSTATLGTPSDAQEMDDLHPSTE 382
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P S G + R+ G RA+ V+ + +
Sbjct: 383 KLYLHHYNFPPYSVGETRPMRSPGRREIGHGAL----AERAILPVLPAKDTFPYVVRVVS 438
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V+ ++G T ++ G+ ++L D ++ + + + +G + D
Sbjct: 439 EVLSSNGSTSMGSVCGSTLSLMDAGVPLKAPVSGAAMGLIKEGDDI---------RILTD 489
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D ++ G I +Q + +N A+ +++ +
Sbjct: 490 IQGIEDFLGDMDFKVAGSEKG-ITALQMDMKITGLPVKTIAEAINQARPARLHILEKMLE 548
Query: 237 VI 238
I
Sbjct: 549 AI 550
Score = 114 bits (286), Expect = 7e-24, Method: Composition-based stats.
Identities = 54/235 (22%), Positives = 88/235 (37%), Gaps = 26/235 (11%)
Query: 10 QMREISLTRR-VSKYAEGSCLVKFGDTHLLTTAT---LEEKVPMWIRNTKHGWITAEYGM 65
REI LT + A GS LV+ GDT +L TAT E + + G
Sbjct: 11 DGREIRLTTGRFAPQAGGSVLVECGDTAVLVTATRSGGREGIDFLPLICDYEERLYAAGR 70
Query: 66 LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125
+P S R GR R+ R+I R +R + Q++ C +
Sbjct: 71 IPGSYQRR------EGRPPERATLTARLIDRPMRPLFPAWLRDDLQVVATCLSLDERVPA 124
Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185
A+TGA +A G +AA+ G+L +++ Y E
Sbjct: 125 DVLAVTGASIATLLAGI-------------PFNGPMAAVRVGLLGDDFVLNPSYREIERG 171
Query: 186 DVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
D+D T G +V V+ + + ++ + I +LIK Q+ ++ +
Sbjct: 172 DLDLIVAGTPDG-VVMVEAGGNQ--LPEQDVIEAIDFGYEAICELIKAQEQLLKD 223
>gi|322514215|ref|ZP_08067277.1| polyribonucleotide nucleotidyltransferase [Actinobacillus ureae
ATCC 25976]
gi|322119908|gb|EFX91917.1| polyribonucleotide nucleotidyltransferase [Actinobacillus ureae
ATCC 25976]
Length = 707
Score = 139 bits (349), Expect = 4e-31, Method: Composition-based stats.
Identities = 42/241 (17%), Positives = 86/241 (35%), Gaps = 18/241 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR + +R + + V GS + G+T L ATL + ++ + K
Sbjct: 314 RIDGRTVDTVRALDICTGVLARTHGSAIFTRGETQALAVATLGTERDAQIIDELTGEKSD 373
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + R+ G + R + +V+ + + + +
Sbjct: 374 RFLFHYNFPPYSVGETGMIGSPKRREIGHGRL----AKRGVLAVMPTAEEFPYVVRVVSE 429
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ GA +AL D ++ + V + + +
Sbjct: 430 ITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEEEKFVVLSD---------I 480
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T G + +Q + + + LN AK ++ +
Sbjct: 481 LGDEDHLGDMDFKVAGTREG-VTALQMDIKIEGITPEIMRIALNQAKGARMHILGVMGQA 539
Query: 238 I 238
I
Sbjct: 540 I 540
Score = 92.6 bits (228), Expect = 4e-17, Method: Composition-based stats.
Identities = 33/232 (14%), Positives = 71/232 (30%), Gaps = 27/232 (11%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----HGWITAEYGMLPR 68
++L +++ A + + DT + T ++ V + T G +P
Sbjct: 15 VTLETGAIARQATAAVMASMDDTTVFVTVVAKKDVKEGQDFFPLTVNYQERTYAVGRIPG 74
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
R GR I R+I R +R + Q++ +
Sbjct: 75 GFFKR------EGRPSEGETLIARLIDRPIRPLFPEGFFNEIQVVATVVSVNPQISPDLV 128
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+ GA A G + A G + +++ E +D
Sbjct: 129 AMIGASAA-------------LSLSGVPFNGPIGAARIGFINDQFVLNPTISEQKQSRLD 175
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
T ++ V+ A+ S++ + + + +I+ K+ +
Sbjct: 176 LVVAGT-DKAVLMVESEADI--LSEEQMLSAVVFGHQQQQVVIENIKEFVKE 224
>gi|297184126|gb|ADI20245.1| hypothetical protein [uncultured Sphingobacterium sp. EB080_L08E11]
Length = 711
Score = 139 bits (349), Expect = 4e-31, Method: Composition-based stats.
Identities = 50/243 (20%), Positives = 81/243 (33%), Gaps = 20/243 (8%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHG 57
RL GR ++R I A GS + G+T LTT T L+ T
Sbjct: 320 RLDGRATTEVRPIWSEVDYLPGAHGSAVFTRGETQSLTTVTLGTSLDANRIDDATFTGEE 379
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P STG VS R+ G RAL +VD I + D
Sbjct: 380 KFYLHYNFPPFSTGEARPIRGVSRREIGHGNL----AQRALYQMVDPE--NPFTIRVVSD 433
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+++++G + A + +A+ D M + + + G A+ +
Sbjct: 434 ILESNGSSSMATVCAGTLAMMDAGVKMVRPVSGIAMGLISDGEKYAVLSD---------I 484
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T+ G I Q + S + L + + ++
Sbjct: 485 LGDEDHLGDMDFKVTGTEKG-ITACQMDIKVKGLSYEILVKALKQSLEGRLHILGEMLKT 543
Query: 238 ISN 240
+
Sbjct: 544 MPE 546
Score = 104 bits (260), Expect = 8e-21, Method: Composition-based stats.
Identities = 42/241 (17%), Positives = 75/241 (31%), Gaps = 26/241 (10%)
Query: 3 LSGRQENQMREISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
GR EI+L ++K A+GS +VK G T LL T ++ I
Sbjct: 13 PDGR------EITLETGKLAKQADGSVVVKCGGTMLLATIVSSKEAKDGIDFLPLTVDYR 66
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
E GR R+I R LR + Q
Sbjct: 67 EKFAANGRVP--GGFLKREGRPSDNEVLTMRLIDRVLRPLFPKDYHAEIQ---------- 114
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
I+ L + + G ++ + G + G +++ +
Sbjct: 115 ---LMIQMISYDENVEATSLTGLAASAAIAVSDLPFDGPISEVRVGRINGEHVINPTPAQ 171
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
+++D + +V V+ E S++ + A D I I+ Q +++
Sbjct: 172 IGELELDM-VIGASMDSVVMVE--GEMQEISEEEMVEAIKYAHDAIKVQIEAQLR-LASH 227
Query: 242 V 242
V
Sbjct: 228 V 228
>gi|296171645|ref|ZP_06852859.1| polyribonucleotide nucleotidyltransferase [Mycobacterium
parascrofulaceum ATCC BAA-614]
gi|295894006|gb|EFG73769.1| polyribonucleotide nucleotidyltransferase [Mycobacterium
parascrofulaceum ATCC BAA-614]
Length = 751
Score = 139 bits (349), Expect = 4e-31, Method: Composition-based stats.
Identities = 45/242 (18%), Positives = 82/242 (33%), Gaps = 10/242 (4%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKH 56
R+ GR +R +S V A GS L + G+T +L TL+ + +
Sbjct: 342 FRIDGRGITDIRALSAEVAVVPRAHGSALFERGETQILGVTTLDMVKMAQQIDSLGPETS 401
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P STG + + R+ G RAL V+ I
Sbjct: 402 KRYMHHYNFPPFSTGETGRVGSPKRREIGHGAL----AERALLPVLPGVEEFPYAIRQVS 457
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+ + ++G T ++ + +AL + ++ + V V + D
Sbjct: 458 EALGSNGSTSMGSVCASTLALLNAGVPLKAPVAGIAMGLVSD-DVEVDGKTERRFVTLTD 516
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED+ D+D T + +Q + L AKD ++++ +
Sbjct: 517 ILGAEDAFGDMDFKCAGTKDF-VTALQLDTKLDGIPSQVLAGALAQAKDARLTILEVMAE 575
Query: 237 VI 238
I
Sbjct: 576 AI 577
>gi|212550826|ref|YP_002309143.1| polynucleotide phosphorylase/polyadenylase [Candidatus
Azobacteroides pseudotrichonymphae genomovar. CFP2]
gi|226702596|sp|B6YRB0|PNP_AZOPC RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|212549064|dbj|BAG83732.1| polyribonucleotide nucleotidyltransferase [Candidatus
Azobacteroides pseudotrichonymphae genomovar. CFP2]
Length = 719
Score = 139 bits (349), Expect = 4e-31, Method: Composition-based stats.
Identities = 44/244 (18%), Positives = 86/244 (35%), Gaps = 18/244 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKH 56
+R+ GR+ ++R I GS + G+T L T TL EK+ +
Sbjct: 318 IRIDGRKTTEIRPIWSEVNPITGPHGSAIFTRGETQALATVTLGTKLNEKIIDDVLINDK 377
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P +TG + + R+ G RAL+ ++ + I +
Sbjct: 378 ERFLLHYNFPPFATGEARAQRGIGRREIGHGNL----AHRALKPIIPNNY--PYVIRVVS 431
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
D+++++G + A + ++L D ++ + + + + + D
Sbjct: 432 DILESNGSSSMATVCAGTLSLMDAGVQIKRPVSGIAMGLIFEKE-------GSKYAILSD 484
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T G I Q + S + L+ AK ++ +
Sbjct: 485 ILGDEDHLGDMDFKVAGTKKG-ITATQMDIKIDGLSYEVLERALSQAKQGREYILDKMLE 543
Query: 237 VISN 240
I
Sbjct: 544 TIPE 547
Score = 99.5 bits (246), Expect = 3e-19, Method: Composition-based stats.
Identities = 36/235 (15%), Positives = 77/235 (32%), Gaps = 27/235 (11%)
Query: 7 QENQMREISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRN----TKHGWITA 61
R I+L ++K A+G+ +++ +T +L T + + + ++ +
Sbjct: 10 DLGDGRTITLETGKLAKQADGAIVLRMNNTMILATVCVAKDTNPCVDFLPLQVEYKEKFS 69
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
+G P R GR R+I R LR + + I
Sbjct: 70 AFGRFPGGFTKR------EGRASDYEILTCRLIDRTLRPLFPRDYHSEVFVNIILFSSDG 123
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
+ L + + + G ++ + + G ++ +GE
Sbjct: 124 EDIPDA-------------LAGLAASAALSVSTIPFNGPISEVRVARIDGKFKINPTFGE 170
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ D+D T +I+ V+ E S++ + A + I K Q +
Sbjct: 171 LAKADMDIMVGATAD-NIMMVE--GEMNEVSEEEMLEAIKAAHEAIKPQCKAQIE 222
>gi|219119866|ref|XP_002180684.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217408157|gb|EEC48092.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 830
Score = 139 bits (349), Expect = 4e-31, Method: Composition-based stats.
Identities = 45/244 (18%), Positives = 87/244 (35%), Gaps = 12/244 (4%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKH 56
+R GR +R++++ + GS L G+T + T TL + + T
Sbjct: 389 LRCDGRGPTDIRQLTMETGLLPRVHGSALFTRGETQCVATTTLGGSGMRQKIEKLDGTDE 448
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
+Y P G + A R+ G RAL + A I ++
Sbjct: 449 KRFYLQYTFPPSCVGETGRVGAPGRREVGHGNL----AERALIPTIPALADFPYTIRVES 504
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+ ++ G + A++ G +AL D ++ + +L G +S + D
Sbjct: 505 LITESHGSSSMASVCGGSLALMDAGVPIKAPVAGIAMG-MLLGDKGGVSDE--NAVILSD 561
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED+ +D G I Q + + + + L A+ L+ +
Sbjct: 562 ILGTEDALGTMDFKVAGDRVG-ISTFQLDIKCEGLTLETMESALEQARTGRLHLLSEMEK 620
Query: 237 VISN 240
VI++
Sbjct: 621 VIAS 624
Score = 76.8 bits (187), Expect = 2e-12, Method: Composition-based stats.
Identities = 33/226 (14%), Positives = 69/226 (30%), Gaps = 28/226 (12%)
Query: 13 EISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT----KHGWITAEYGMLP 67
I + + + A G+ + GD+ L T + ++ I + + G+
Sbjct: 89 PICIETGKIGRQAAGAVTLTRGDSVLYATTSHDKDPKEEIDFCPLSVDYQERFSSAGLTS 148
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R R R+I R LR ++ Q++ +
Sbjct: 149 GGYNKRDG------RPAEHEILTCRLIDRPLRPLIQSGWRHETQLLSWVLSYDGERSCDP 202
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG-YPIVDLDYGEDSTID 186
AI + + F L VAA+ GM +V+ + T
Sbjct: 203 LAIIASASS-------------LFISDVPLHKPVAAVQVGMKDDGTLVVNPTNLQMETSK 249
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
++ T+ ++ ++G+A + + + I L +
Sbjct: 250 LNLMVAGTEE-AVLMIEGAA--DFLPESTMIQAVKTGHEAIQVLCQ 292
>gi|206895816|ref|YP_002247081.1| polyribonucleotide nucleotidyltransferase [Coprothermobacter
proteolyticus DSM 5265]
gi|257096676|sp|B5Y8I4|PNP_COPPD RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|206738433|gb|ACI17511.1| polyribonucleotide nucleotidyltransferase [Coprothermobacter
proteolyticus DSM 5265]
Length = 697
Score = 139 bits (349), Expect = 4e-31, Method: Composition-based stats.
Identities = 47/241 (19%), Positives = 87/241 (36%), Gaps = 18/241 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +++R + V GS L G T +L+T TL + + I +
Sbjct: 316 RVDGRAFDEIRPLYAESSVLPKVHGSGLFIRGQTQVLSTVTLGSFSDVQFIDAIGLEEFK 375
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
+Y P STG R S R+ G + RAL ++ + I + +
Sbjct: 376 RFMHQYDFPPFSTGEVKPRRGPSRREIGHGAL----VERALSYLIPSEEVFPYTIRVVSE 431
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
V++++G T A+ + +AL M + + + +
Sbjct: 432 VLESNGSTSMASTCASSIALMSAGVPMARHVGGIAMGLIEYNDENVVLTD---------I 482
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T G I +Q + S + ++ A+ + ++ + D
Sbjct: 483 QGLEDHLGDMDFKVAGTREG-ITALQLDVKVKGISVETLDKAIDQAEVARSKILDVLYDA 541
Query: 238 I 238
I
Sbjct: 542 I 542
Score = 93.4 bits (230), Expect = 2e-17, Method: Composition-based stats.
Identities = 38/235 (16%), Positives = 76/235 (32%), Gaps = 28/235 (11%)
Query: 13 EISLTRRVSK-YAEGSCLVKFGDTHLLTTATLEEK----VPMWIRNTKHGWITAEYGMLP 67
++ A G+ L +FGDT L+T + + + + + + G +P
Sbjct: 17 KVIFQSGFLALQANGAVLARFGDTVALSTVLMSSEPKLDIDFFPLTVDYEEKSYAVGKIP 76
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
GR R+I R++R + Q++ +
Sbjct: 77 GGFFK------KEGRPTDMEILKARLIDRSIRPMFPDGMRNEVQVLNMILAADMENPPDI 130
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
A+ G A + +A + G + G +++ + E S +
Sbjct: 131 VALNGTAAA-------------LAVSDIPIPELIAGVRVGYIDGEYVLNPTFAEMSESQL 177
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNEV 242
D T IV ++ A A + L A++ I +I L + + +V
Sbjct: 178 DLVVAGTRD-SIVMIEAGA--AEVDKSILIGGLKFAQEGIRQIIDLIAE-LKEKV 228
>gi|271963663|ref|YP_003337859.1| polyribonucleotide nucleotidyltransferase [Streptosporangium roseum
DSM 43021]
gi|270506838|gb|ACZ85116.1| Polyribonucleotide nucleotidyltransferase [Streptosporangium roseum
DSM 43021]
Length = 773
Score = 139 bits (349), Expect = 4e-31, Method: Composition-based stats.
Identities = 45/242 (18%), Positives = 84/242 (34%), Gaps = 18/242 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
+R+ GR +R+++ V GS L + G+T +L TL E++ + +
Sbjct: 337 VRIDGRGVKDIRQLNAEVHVVPRVHGSALFERGETQILGITTLNMLRMEQMIDTLNPERT 396
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P STG + + R+ G RAL V+ I
Sbjct: 397 KRYMHNYNFPPYSTGETGRVGSPKRREIGHGAL----AERALVPVLPAREEFPYAIRQVS 452
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+ + ++G T ++ + +AL D ++ + + +G
Sbjct: 453 EALGSNGSTSMGSVCASTMALLDAGVPLKGIVAGIAMGLINEGDQYVTLTD--------- 503
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED+ D+D T I +Q + A L AK +I + ++
Sbjct: 504 ILGAEDAMGDMDFKVAGTKD-VITALQLDTKLDGIPASVLAAALKQAKGARLAIIDVMQE 562
Query: 237 VI 238
I
Sbjct: 563 AI 564
Score = 79.1 bits (193), Expect = 5e-13, Method: Composition-based stats.
Identities = 38/246 (15%), Positives = 71/246 (28%), Gaps = 39/246 (15%)
Query: 12 REISLTRR-VSKYAEGSCLVKF-GDTHLLTTATLEEKVPMWIRNT----KHGWITAEYGM 65
R I +++ A GS +V +T +L+ T + + G
Sbjct: 19 RTIRFETGRLARQAAGSAVVYLDDETMVLSATTASKNPKENLDFFPLTVDVEERMYAAGR 78
Query: 66 LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125
+P S R GR + R+I R LR Q++ + D
Sbjct: 79 IPGSFFRR------EGRPSEDAILTCRLIDRPLRPSFVKGLRNEIQVVATIMALNPDHLY 132
Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185
AI A ++ G + + ++ G + + E +
Sbjct: 133 DVVAINAASLSTQLAG-------------LPFSGPIGGVRVALIEGQWVAFPTHSELANA 179
Query: 186 DVDANFVMT----DSGHIVEVQGSAERATF----------SQDHFFAMLNLAKDRIADLI 231
D I+ V+ + R T +++ L +K I L
Sbjct: 180 TFDMVVAGRVLEDGDVAIMMVEAESTRDTLKLVADGAVAPTEETVAQGLEASKPFIKVLC 239
Query: 232 KLQKDV 237
+ Q +
Sbjct: 240 EAQSKI 245
>gi|322806678|emb|CBZ04247.1| polyribonucleotide nucleotidyltransferase [Clostridium botulinum
H04402 065]
Length = 702
Score = 138 bits (348), Expect = 4e-31, Method: Composition-based stats.
Identities = 47/243 (19%), Positives = 85/243 (34%), Gaps = 16/243 (6%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHG 57
R GR +++R IS + G+ L G T ++T AT + ++ I +
Sbjct: 312 RPDGRAFDEVRPISCEVGILPRTHGTGLFTRGLTQVMTVATLGALGDVQILDGIAEEESK 371
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y S G R+ G RAL ++ + I + +
Sbjct: 372 RYMHHYNFPSYSVGEVRPLRGPGRREIGHGAL----AERALEPLIPSESEFPYTIRLVSE 427
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
V+ ++G T A++ G+ +AL D ++ + + + + I D+
Sbjct: 428 VLSSNGSTSQASVCGSTLALLDAGVPIKRPAAGIAMGLITSED-------LEKEKVITDI 480
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T+ G I +Q + S L AK ++ K+
Sbjct: 481 QGIEDFFGDMDFKVAGTEKG-ITSIQFDTKIKGLSNSCVKDALEGAKKARLHILGKIKEC 539
Query: 238 ISN 240
I
Sbjct: 540 IPE 542
Score = 85.7 bits (210), Expect = 5e-15, Method: Composition-based stats.
Identities = 37/236 (15%), Positives = 81/236 (34%), Gaps = 31/236 (13%)
Query: 12 REISL---TRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----HGWITAEYG 64
R++ + + A + + +GDT ++ A ++ I + G
Sbjct: 12 RKMKVDFGKTGMLSNA--AIFMSYGDTVVMINANASKEPREGIDFFPLSVEYEERLYSVG 69
Query: 65 MLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGG 124
+P R G+ +S R I R LR + QI+ ++ D
Sbjct: 70 KIPGGFIKR------EGKPSDKSILHARSIDRPLRPLFPKGYRNDVQIVNTVLSVEQDNL 123
Query: 125 TRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDST 184
AI G+ +AL S VAA+S G++ G I++ +
Sbjct: 124 PEILAINGSSLALC-------------LSSIPFTTPVAAVSVGLVDGEFIINPTVAQREN 170
Query: 185 IDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
+D T ++ V+ + ++ ++ + + ++ Q++ ++
Sbjct: 171 TILDLTVCATKE-RVMMVEAGGQE--IDEETMYSAIMFGFEECKNIAAFQEEAVAK 223
>gi|322388265|ref|ZP_08061869.1| polyribonucleotide nucleotidyltransferase [Streptococcus infantis
ATCC 700779]
gi|321140937|gb|EFX36438.1| polyribonucleotide nucleotidyltransferase [Streptococcus infantis
ATCC 700779]
Length = 757
Score = 138 bits (348), Expect = 5e-31, Method: Composition-based stats.
Identities = 42/244 (17%), Positives = 80/244 (32%), Gaps = 18/244 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56
+R GR+ +++R + GS L G T L+ T E ++ +
Sbjct: 334 VRPDGRKVDEIRPLDAVVDFVPRVHGSGLFTRGQTQALSILTLAPMGETQIIDGLDPEYK 393
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y S G + A R+ G RAL V+ I +
Sbjct: 394 KRFMHHYNFPQYSVGETGRYGAPGRREIGHGALG----ERALAQVLPSLEEFPYAIRLVA 449
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V++++G + A+I +AL ++ + + + D
Sbjct: 450 EVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISD---------GNNYTVLTD 500
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T G I +Q + + + L AK +++ + +
Sbjct: 501 IQGLEDHFGDMDFKVAGTRDG-ITALQMDIKIQGITAEILTEALAQAKKARFEILDVIEA 559
Query: 237 VISN 240
I
Sbjct: 560 TIPE 563
Score = 109 bits (271), Expect = 4e-22, Method: Composition-based stats.
Identities = 41/232 (17%), Positives = 86/232 (37%), Gaps = 26/232 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKV---PMWIRNTKHGWITAEYGMLP 67
RE+ + V+K A G+ +V++G++ +LT A + +K+ + + G P
Sbjct: 30 RELIVETGQVAKQANGAVVVRYGESTVLTAAVMSKKMATGDFFPLQVNYEEKMYAAGKFP 89
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R GR + R+I R +R + Q+I +
Sbjct: 90 GGFMKR------EGRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDENASAPM 143
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
AA+ G+ +A G +A + G + G I++ + + +
Sbjct: 144 AAMFGSSLA-------------LSISDIPFDGPIAGVQVGYVDGEIIINPTQEQAESSLL 190
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
+ T I V+ A+ S++ L + + +LI Q+++++
Sbjct: 191 ELTVAGTKH-AINMVESGAKE--LSEEIMLQALLKGHEAVKELIAFQEEIVA 239
>gi|325962822|ref|YP_004240728.1| guanosine pentaphosphate synthetase I/polynucleotide phosphorylase
[Arthrobacter phenanthrenivorans Sphe3]
gi|323468909|gb|ADX72594.1| guanosine pentaphosphate synthetase I/polynucleotide phosphorylase
[Arthrobacter phenanthrenivorans Sphe3]
Length = 767
Score = 138 bits (348), Expect = 5e-31, Method: Composition-based stats.
Identities = 40/242 (16%), Positives = 84/242 (34%), Gaps = 14/242 (5%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
+R+ GR +R+++ V GS + + G+T ++ TL E+ + K
Sbjct: 357 IRIDGRGLTDIRQLTAEVEVLPRVHGSAIFERGETQIMGVTTLNMLKMEQQIDSLSPVKT 416
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P STG + + R+ G RAL V+ I
Sbjct: 417 KRYMHNYNFPPYSTGETGRVGSPKRREIGHGAL----AERALVPVLPSREEFPYAIRQVS 472
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+ + ++G T ++ + +++ + ++ + V G + D
Sbjct: 473 EALGSNGSTSMGSVCASTLSMLNAGVPLKAAVAGIAMGLVSDQ-----VDGQTRYAALTD 527
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED+ D+D T + +Q + A L A++ ++++
Sbjct: 528 ILGAEDAFGDMDFKVAGTSEF-VTAIQLDTKLDGIPASVLAAALKQAREARLHILEVINS 586
Query: 237 VI 238
I
Sbjct: 587 AI 588
Score = 67.6 bits (163), Expect = 1e-09, Method: Composition-based stats.
Identities = 42/238 (17%), Positives = 69/238 (28%), Gaps = 29/238 (12%)
Query: 12 REISLTRR-VSKYAEGSCLVKF-GDTHLLTTATLE----EKVPMWIRNTKHGWITAEYGM 65
R I ++K A G+ +V DT LL+ T E + G
Sbjct: 35 RVIRFETGRLAKQAAGAAMVYIDDDTALLSATTAGKHPREGFDFFPLTVDVEERMYAAGR 94
Query: 66 LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125
+P S R GR + R++ R LR QI++ I D
Sbjct: 95 IPGSFFRR------EGRPSTEAILACRLMDRPLRPAFIKGLRNEVQIVVTVLAINPDELY 148
Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185
AI + ++ +++ V A G
Sbjct: 149 DVVAINASSMSTQLSGLPFSGPIGGVRVALV------ADENGSQWVAFPKHSQLENSVFN 202
Query: 186 DVDANFVMTDSGHIVEVQGSAERATF-----------SQDHFFAMLNLAKDRIADLIK 232
V A + D I+ V+ A ++ +++ L AK I L +
Sbjct: 203 MVVAGRIAGDDVAIMMVEAEATDNSWNLIKEQGATAPTEEVVSEGLEAAKPFIKALCE 260
>gi|254525392|ref|ZP_05137444.1| 3' exoribonuclease family, domain 2, protein [Prochlorococcus
marinus str. MIT 9202]
gi|221536816|gb|EEE39269.1| 3' exoribonuclease family, domain 2, protein [Prochlorococcus
marinus str. MIT 9202]
Length = 691
Score = 138 bits (348), Expect = 5e-31, Method: Composition-based stats.
Identities = 43/244 (17%), Positives = 89/244 (36%), Gaps = 19/244 (7%)
Query: 2 RLSGRQENQMREISLTRRVSK-YAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
R+ GR +++R+IS + GS L + G T +L+T TL + + + +
Sbjct: 293 RVDGRDLDEVRKISAFAGILPKRVHGSALFQRGLTQVLSTTTLGTPSDAQEMDDLNPSTE 352
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P S G R+ G RA+ V+ + +
Sbjct: 353 KTYLHHYNFPPYSVGETRPMRTPGRREIGHGAL----AERAIIPVLPGKETFPYVLRVVS 408
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V+ ++G T ++ G+ ++L D ++ + + + +G + D
Sbjct: 409 EVLSSNGSTSMGSVCGSTLSLLDAGVPLKAPVSGTAMGLIKEGKEV---------RILTD 459
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D TD G I +Q + + A+ +++ ++
Sbjct: 460 IQGIEDFLGDMDFKVAGTDKG-ITALQMDMKITGLPVSIISDAIKKARPARLHILEKMQE 518
Query: 237 VISN 240
I+
Sbjct: 519 AINK 522
Score = 68.3 bits (165), Expect = 1e-09, Method: Composition-based stats.
Identities = 48/215 (22%), Positives = 80/215 (37%), Gaps = 25/215 (11%)
Query: 29 LVKFGDTHLLTTATLEEKV---PMWIRNTKHGWITAEYGMLPRSTGNRVKREAVSGRQGG 85
+++ GDT LL TAT K + G +P R GR
Sbjct: 1 MIECGDTSLLVTATKTTKKDTSDFLPLICDYEEKLYAAGRIPGGFMRR------EGRPPE 54
Query: 86 RSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHME 145
R+ I R+I R +R + QI+ C + A+TGA +A
Sbjct: 55 RATLIARLIDRPMRPLFPSWMRDEIQIVASCLSLDERVPADVLAVTGASLAT-------- 106
Query: 146 DCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGS 205
G +AA+ G++ I++ Y E D+D T G IV ++
Sbjct: 107 -----LLGEIPFYGPMAAVRVGLIGDDFILNPSYREIEKGDLDIVIAGTPDG-IVMIEAG 160
Query: 206 AERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
A + S+ ++ + + +LIK Q D++ +
Sbjct: 161 ANQ--LSEQDTIEAIDFGYEAVTELIKSQDDLLKD 193
>gi|170759417|ref|YP_001787723.1| polynucleotide phosphorylase/polyadenylase [Clostridium botulinum
A3 str. Loch Maree]
gi|226702640|sp|B1KWK1|PNP_CLOBM RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|169406406|gb|ACA54817.1| polyribonucleotide nucleotidyltransferase [Clostridium botulinum A3
str. Loch Maree]
Length = 702
Score = 138 bits (348), Expect = 5e-31, Method: Composition-based stats.
Identities = 47/243 (19%), Positives = 85/243 (34%), Gaps = 16/243 (6%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHG 57
R GR +++R IS + G+ L G T ++T AT + ++ I +
Sbjct: 312 RPDGRAFDEVRPISCEVGILPRTHGTGLFTRGLTQVMTVATLGALGDVQILDGIAEEESK 371
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y S G R+ G RAL ++ + I + +
Sbjct: 372 RYMHHYNFPSYSVGEVRPLRGPGRREIGHGAL----AERALEPLIPSESEFPYTIRLVSE 427
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
V+ ++G T A++ G+ +AL D ++ + + + + I D+
Sbjct: 428 VLSSNGSTSQASVCGSTLALLDAGVPIKRPAAGIAMGLITSED-------LEKEKVITDI 480
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T+ G I +Q + S L AK ++ K+
Sbjct: 481 QGIEDFFGDMDFKVAGTEKG-ITSIQFDTKIKGLSNSCVKDALEGAKKARLHILGKIKEC 539
Query: 238 ISN 240
I
Sbjct: 540 IPE 542
Score = 86.4 bits (212), Expect = 3e-15, Method: Composition-based stats.
Identities = 37/236 (15%), Positives = 82/236 (34%), Gaps = 31/236 (13%)
Query: 12 REISL---TRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----HGWITAEYG 64
R++ + + A + + +GDT ++ A ++ I + G
Sbjct: 12 RKMKVDFGKTGMLSNA--AIFMSYGDTVVMINANASKEPREGIDFFPLSVEYEERLYSVG 69
Query: 65 MLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGG 124
+P R G+ +S R I R LR + QI+ ++ D
Sbjct: 70 KIPGGFIKR------EGKPSDKSILHARSIDRPLRPLFPKGYRNDVQIVNTVLSVEQDNL 123
Query: 125 TRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDST 184
AI G+ +AL S VAA+S G++ G I++ +
Sbjct: 124 PEILAINGSSLALC-------------LSSIPFTTPVAAVSVGLVDGEFIINPTVAQREN 170
Query: 185 IDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
+D T ++ V+ + ++ ++ + + +++ Q++ ++
Sbjct: 171 TILDLTVCATKE-RVMMVEAGGQE--IDEETMYSAIMFGFEECKNIVAFQEEAVAK 223
>gi|38234048|ref|NP_939815.1| polynucleotide phosphorylase/polyadenylase [Corynebacterium
diphtheriae NCTC 13129]
gi|81564774|sp|Q6NGP1|PNP_CORDI RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|38200310|emb|CAE49995.1| guanosine pentaphosphate synthetase/ polyribonucleotide
nucleotidyltransferase [Corynebacterium diphtheriae]
Length = 755
Score = 138 bits (348), Expect = 5e-31, Method: Composition-based stats.
Identities = 44/243 (18%), Positives = 85/243 (34%), Gaps = 14/243 (5%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKH 56
R+ GR +R++ + + A GS L + G+T +L TL+ E+ +
Sbjct: 369 FRIDGRGVTDIRDLGVEVDLIPRAHGSSLFERGETQILGVTTLDMLKMEQQIDSLTPATS 428
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P STG + + R+ G RAL V+ I
Sbjct: 429 KRYIHHYNFPPYSTGETGRVGSPKRREIGHGAL----AERALVPVIPSREEFPYAIRQVS 484
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+ + ++G T ++ + ++L++ ++ + V G + D
Sbjct: 485 EALGSNGSTSMGSVCASTLSLYNAGVPLKAPVAGIAMGLVSDE-----VDGETRYVALTD 539
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED+ D+D T I +Q + + L+ A D ++ +
Sbjct: 540 ILGAEDAFGDMDFKVAGTRQF-ITALQLDTKLDGIPSEVLAQALSQANDARNTILDTMAE 598
Query: 237 VIS 239
VI
Sbjct: 599 VIE 601
Score = 75.7 bits (184), Expect = 5e-12, Method: Composition-based stats.
Identities = 41/246 (16%), Positives = 64/246 (26%), Gaps = 32/246 (13%)
Query: 12 REISLTRR-VSKYAEGSCLVKF-GDTHLLTTATLE----EKVPMWIRNTKHGWITAEYGM 65
R I +++ A+GS DT LL T T E + G
Sbjct: 33 RTIRFETGQLARQADGSVTTYLDDDTMLLATTTASNQPREGFDFFPLTVDVEERMYAAGR 92
Query: 66 LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125
+P S R GR + R+I R LR Q++I +
Sbjct: 93 IPGSFFRR------EGRPSTEAILACRLIDRPLRPTFVKGLRNEVQVVITVLSVNPQDMY 146
Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLK-------GHVAAISCGMLCGYPIVDLD 178
AI GA A + +++ + + +
Sbjct: 147 DVVAINGASAATQLSGLPVSGPVGGVRMALIADDAHPKGQWIAFPTHEQHEQALFELVVA 206
Query: 179 YGEDSTIDVDANFVMTDSGHIVEVQGSAERATF----------SQDHFFAMLNLAKDRIA 228
S D I+ V+ A ++ L AK I
Sbjct: 207 GRIVSKKQGKKTV---DDVAIMMVEAGATEQVVDRVKAGAPAPTESVVAEGLEAAKPFIE 263
Query: 229 DLIKLQ 234
L + Q
Sbjct: 264 VLCRAQ 269
>gi|322392303|ref|ZP_08065764.1| polyribonucleotide nucleotidyltransferase [Streptococcus peroris
ATCC 700780]
gi|321144838|gb|EFX40238.1| polyribonucleotide nucleotidyltransferase [Streptococcus peroris
ATCC 700780]
Length = 751
Score = 138 bits (348), Expect = 5e-31, Method: Composition-based stats.
Identities = 42/244 (17%), Positives = 80/244 (32%), Gaps = 18/244 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56
+R GR+ +++R + GS L G T L+ T E ++ +
Sbjct: 334 VRPDGRKVDEIRPLDAGVDFVPRVHGSGLFTRGQTQALSILTLAPMGETQIIDGLDPEYK 393
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y S G + A R+ G RAL V+ I +
Sbjct: 394 KRFMHHYNFPQYSVGETGRYGAPGRREIGHGALG----ERALAQVLPSLEEFPYAIRLVA 449
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V++++G + A+I +AL ++ + + + D
Sbjct: 450 EVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISD---------GNNYTVLTD 500
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T G I +Q + + + L AK +++ + +
Sbjct: 501 IQGLEDHFGDMDFKVAGTRDG-ITALQMDIKIQGITAEILAEALAQAKKARFEILDVIEA 559
Query: 237 VISN 240
I
Sbjct: 560 TIPE 563
Score = 112 bits (280), Expect = 4e-23, Method: Composition-based stats.
Identities = 42/232 (18%), Positives = 85/232 (36%), Gaps = 26/232 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKV---PMWIRNTKHGWITAEYGMLP 67
RE+ + V+K A GS +V++G++ +LT A + +K+ + + G P
Sbjct: 30 RELIVETGQVAKQANGSVVVRYGESTVLTAAVMSKKMATGDFFPLQVNYEEKMYAAGKFP 89
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R GR + R+I R +R + Q+I +
Sbjct: 90 GGFMKR------EGRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDENASAPM 143
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
AA+ G+ +A G +A + G + G I++ + +
Sbjct: 144 AAMFGSSLA-------------LSISDIPFDGPIAGVQVGYVDGQIIINPTQEQAEQSLL 190
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
+ T I V+ A+ S++ L + + +LI Q+++++
Sbjct: 191 ELTVAGTKH-AINMVESGAKE--LSEEIMLQALLKGHEAVKELIAFQEEIVA 239
>gi|299115591|emb|CBN75793.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 834
Score = 138 bits (348), Expect = 5e-31, Method: Composition-based stats.
Identities = 42/240 (17%), Positives = 79/240 (32%), Gaps = 13/240 (5%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHG 57
R GR+ +++R IS+ + GSCL GDT + T T + I
Sbjct: 342 RCDGRRTDEVRPISIETGLLPRTHGSCLFTRGDTQAIATVTLGGSGSSQKTDGITGMILK 401
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
+Y P G + R+ G +AL V + ++
Sbjct: 402 HFYLQYTFPPSCVGETGRIGGPGRREVGHGAL----AEKALSYTVPPVNDFPYTVRVESL 457
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ ++ G + A++ G +A+ D + + +L + + + D+
Sbjct: 458 ITESCGSSSMASVCGGSLAMMDAGIPVSSPIAGVAMGLLLDEEGGSGEEAV----VLTDI 513
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED+ +D D G I Q + A + L AK ++ +
Sbjct: 514 LGLEDALGTMDFKVAGNDKG-ITTFQLDIKCAGLTTALLGRALTQAKAGRLHILGEMQKA 572
Score = 78.0 bits (190), Expect = 1e-12, Method: Composition-based stats.
Identities = 32/229 (13%), Positives = 71/229 (31%), Gaps = 25/229 (10%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKV---PMWIRNTKHGWITAEYGMLP 67
R++S V + A G+ + + G+T + +TA + K + + GM
Sbjct: 33 RDLSFETGKVGRQASGAVMARDGETVVYSTACTDRKTTTSNFSPLRVDYMERFSAAGMTS 92
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R R + + R++ R LR + Q++
Sbjct: 93 GGYNKRDG------RASDKETLVSRLMDRPLRPAMHPGWFHETQLLSWVLSYDTVHPPVP 146
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
AIT A AL + + +G + V+ + + +
Sbjct: 147 LAITAASAALALSNVPLVRAIAGVTVGMDSEGELV------------VNPEISVAAMSPL 194
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ T G ++ ++ E ++ + + + DL ++
Sbjct: 195 NLTIAGTADG-VLMIE--GESDFVCEEDMMRAIEVGHAAVRDLCLGIEE 240
>gi|194246773|ref|YP_002004412.1| polynucleotide phosphorylase/polyadenylase [Candidatus Phytoplasma
mali]
gi|257096701|sp|B3QZG1|PNP_PHYMT RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|193807130|emb|CAP18568.1| Polyribonucleotide nucleotidyltransferase [Candidatus Phytoplasma
mali]
Length = 728
Score = 138 bits (348), Expect = 5e-31, Method: Composition-based stats.
Identities = 45/244 (18%), Positives = 88/244 (36%), Gaps = 14/244 (5%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
+R GR +++R I+ + GS L G T L TL E K+ + +
Sbjct: 337 IRPDGRNSSEIRSITSRIDILPRTHGSALFTRGGTQSLAIVTLGTLRESKIIDDLSDEVD 396
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y + G+ + A S R+ G +AL V+ I +
Sbjct: 397 KRFMLHYNFPAFAVGSVGRYLAPSRREIGHGML----AEKALECVLPSENDFPYSIRVVS 452
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+++ ++G + A I + +AL ++ + ++ + + D
Sbjct: 453 EILDSNGSSSQATICASSMALMSAGVPLKSLVAGVAMGLIVDDIDK-----INHYTILSD 507
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
++ ED D+D T G I +Q + + + F +L AK ++ +
Sbjct: 508 IEGLEDYQGDIDFKIAGTKVG-ITALQLDIKIKGITLEIFEKVLEQAKKDRIKILNEMEK 566
Query: 237 VISN 240
VI+
Sbjct: 567 VINK 570
Score = 78.7 bits (192), Expect = 7e-13, Method: Composition-based stats.
Identities = 32/233 (13%), Positives = 78/233 (33%), Gaps = 27/233 (11%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEK---VPMWIRNTKHGWITAEYGMLPRS 69
+ + +S+ A GS ++ + DT +L+ A +K + + G +P
Sbjct: 22 LRIEIGEISRQANGSVMLFYKDTVILSVAVCGDKKNSLNFLPLTVNYQEKLYAAGKIPGG 81
Query: 70 TGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAA 129
R G+ + R+I R +R + + Q+I
Sbjct: 82 FLRR------EGKPSDQEILCSRLIDRTIRPLFSKNFKNEVQLINMV------------- 122
Query: 130 ITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDA 189
++ ++ + + V+++ G + I++ +
Sbjct: 123 LSSDPDGNNENIALLGSSLALLISDIPFFEPVSSVCVGKIGDNLIINPTLSQRENSSFFL 182
Query: 190 NFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNEV 242
T + V+ S++ S+++F + + I L Q + I+N++
Sbjct: 183 ILAGTKD-SLNMVEMSSKE--ISENNFLESIKFGHEIIKKLCLFQTE-IANQI 231
>gi|147919675|ref|YP_686581.1| putative exosome complex exonuclease 1 [uncultured methanogenic
archaeon RC-I]
gi|110621977|emb|CAJ37255.1| putative exosome complex exonuclease 1 [uncultured methanogenic
archaeon RC-I]
Length = 253
Score = 138 bits (348), Expect = 5e-31, Method: Composition-based stats.
Identities = 65/241 (26%), Positives = 96/241 (39%), Gaps = 22/241 (9%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKV-PMWIRNTKHGWIT 60
RL GR +R I V K A+GSC ++FG ++ +V P ++ + +
Sbjct: 13 RLDGRGPFDLRPIKFQAGVLKRADGSCYLEFGGNKVMAAVYGPREVHPRHLQQASNAIVR 72
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
Y M S R + RS EI ++ AL SV+ I I +++Q
Sbjct: 73 YRYNMASFSVEERKRPG-----PDRRSIEISKVSREALESVILKELYPRSAIDIFVEILQ 127
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
AD GTR A I A VAL D +K V+A + G ++DL+
Sbjct: 128 ADAGTRVAGINAASVALADAGI-------------PMKCLVSACAVGKADDTLVLDLNKD 174
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
ED+ D M G I Q + D F LN+A + L +LQK +
Sbjct: 175 EDNYGQADLPIAMNQFGEITLCQMDGH---MTSDEFSTALNMAIEGCKKLHELQKQALVE 231
Query: 241 E 241
+
Sbjct: 232 K 232
>gi|312139341|ref|YP_004006677.1| polyribonucleotide nucleotidyltransferase pnp [Rhodococcus equi
103S]
gi|311888680|emb|CBH47992.1| polyribonucleotide nucleotidyltransferase Pnp [Rhodococcus equi
103S]
Length = 752
Score = 138 bits (347), Expect = 6e-31, Method: Composition-based stats.
Identities = 42/242 (17%), Positives = 83/242 (34%), Gaps = 14/242 (5%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKH 56
R+ GR +R +S V A GS L + G+T ++ TL+ + +
Sbjct: 352 FRIDGRGITDIRSLSAEVAVIPRAHGSALFERGETQIMGVTTLDMVKMAQQVDSLGPETS 411
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P STG + + R+ G RAL V+ I
Sbjct: 412 KRYMHHYNFPPYSTGETGRVGSPKRREIGHGAL----AERALVPVLPSQEEFPYAIRQVS 467
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+ + ++G T ++ + ++L + ++ + V G + D
Sbjct: 468 EALSSNGSTSMGSVCASTLSLLNAGVPLKAPVAGIAMGLVSDE-----VDGETRYVALTD 522
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED+ D+D T + + +Q + L+ A D ++++ +
Sbjct: 523 ILGAEDAFGDMDFKVAGTKNF-VTALQLDTKLDGIPSQVLAGALSQAHDARTTILEVMAE 581
Query: 237 VI 238
I
Sbjct: 582 AI 583
>gi|325672779|ref|ZP_08152475.1| polyribonucleotide nucleotidyltransferase [Rhodococcus equi ATCC
33707]
gi|325556656|gb|EGD26322.1| polyribonucleotide nucleotidyltransferase [Rhodococcus equi ATCC
33707]
Length = 752
Score = 138 bits (347), Expect = 6e-31, Method: Composition-based stats.
Identities = 42/242 (17%), Positives = 83/242 (34%), Gaps = 14/242 (5%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKH 56
R+ GR +R +S V A GS L + G+T ++ TL+ + +
Sbjct: 352 FRIDGRGITDIRSLSAEVAVIPRAHGSALFERGETQIMGVTTLDMVKMAQQVDSLGPETS 411
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P STG + + R+ G RAL V+ I
Sbjct: 412 KRYMHHYNFPPYSTGETGRVGSPKRREIGHGAL----AERALVPVLPSQEEFPYAIRQVS 467
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+ + ++G T ++ + ++L + ++ + V G + D
Sbjct: 468 EALSSNGSTSMGSVCASTLSLLNAGVPLKAPVAGIAMGLVSDE-----VDGETRYVALTD 522
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED+ D+D T + + +Q + L+ A D ++++ +
Sbjct: 523 ILGAEDAFGDMDFKVAGTKNF-VTALQLDTKLDGIPSQVLAGALSQAHDARTTILEVMAE 581
Query: 237 VI 238
I
Sbjct: 582 AI 583
>gi|242278471|ref|YP_002990600.1| polynucleotide phosphorylase/polyadenylase [Desulfovibrio
salexigens DSM 2638]
gi|242121365|gb|ACS79061.1| Polyribonucleotide nucleotidyltransferase [Desulfovibrio salexigens
DSM 2638]
Length = 750
Score = 138 bits (347), Expect = 6e-31, Method: Composition-based stats.
Identities = 48/244 (19%), Positives = 87/244 (35%), Gaps = 18/244 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
+R+ GR +R +S+ GS L + G+T L TL +E+ +
Sbjct: 320 VRIDGRDLTTVRNLSMEVSNLPMTHGSALFRRGETSALAVCTLGSTRDEQRFETLIGEDT 379
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P G A S R+ G RALR V+ + + +
Sbjct: 380 KRFMLHYNFPPYCVGEAKFLRAPSRREIGHGTL----AERALRPVLPKAEDFPFTMRVVS 435
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V+ ++G + A + G ++L D + + +G + + D
Sbjct: 436 EVMDSNGSSSMATVCGTTLSLMDAGVPISAPVAGIAMGLCQEGDE---------YFVLTD 486
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED+ D+D T+ G I +Q + + D L AKD ++ K+
Sbjct: 487 ILGDEDALGDMDFKVAGTEEG-ITAIQMDIKISGIPADVLRRALAQAKDARQIILDDMKE 545
Query: 237 VISN 240
+
Sbjct: 546 TMPE 549
Score = 98.4 bits (243), Expect = 8e-19, Method: Composition-based stats.
Identities = 45/234 (19%), Positives = 82/234 (35%), Gaps = 25/234 (10%)
Query: 13 EISLTRR-VSKYAEGSCLVKFGDTHLLTTATL---EEKVPMWIRNTKHGWITAEYGMLPR 68
+I+L ++ G+ L+K G T +L TA + + + T G +P
Sbjct: 18 DITLETGRMANQTNGTVLIKSGGTVVLVTAVGMPADGPRDFFPLTCNYLERTYAAGRIPG 77
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
R GR R + R++ R +R + + Q+I D
Sbjct: 78 GYFRR-----EVGRPSDRETLVSRLMDRPIRPMFPKAYRDEVQVIATVLSADTDTNPDVL 132
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+TGA ALH G VAA G++ ++ Y +
Sbjct: 133 AMTGASAALH-------------ISDLPFNGPVAAARVGLVDNEFVLYPTYKGVAEQSDL 179
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNEV 242
++ V+GS++ S++ L +++A + LQ + +V
Sbjct: 180 NLVFAATRDAVIMVEGSSQ--FLSENTIAEALEWGHEQMAPMFDLQD-ALREKV 230
>gi|148241642|ref|YP_001226799.1| polynucleotide phosphorylase/polyadenylase [Synechococcus sp.
RCC307]
gi|187611327|sp|A5GRD7|PNP_SYNR3 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|147849952|emb|CAK27446.1| Polyribonucleotide nucleotidyltransferase [Synechococcus sp.
RCC307]
Length = 719
Score = 138 bits (347), Expect = 6e-31, Method: Composition-based stats.
Identities = 45/242 (18%), Positives = 86/242 (35%), Gaps = 19/242 (7%)
Query: 2 RLSGRQENQMREISLTRRVSK-YAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
R+ GR +Q+R IS V GS L + G T +L+TATL + + + +
Sbjct: 323 RVDGRSLDQVRPISAAAGVLPKRVHGSGLFQRGLTQVLSTATLGTPSDAQEMDDLNPSNE 382
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P S G + R+ G RAL V+ + +
Sbjct: 383 KHYLHHYNFPPYSVGETRPMRSPGRREIGHGAL----AERALLPVLPPKESFPYVLRVVS 438
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V+ ++G T ++ G+ +AL D + + + +G +
Sbjct: 439 EVLSSNGSTSMGSVCGSTLALMDAGVPIAAPVAGAAMGLIREGSEVRVLTD--------- 489
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T+ G I +Q + + + A+ +++ +
Sbjct: 490 IQGIEDFLGDMDFKVAGTEKG-ITALQMDMKITGLAMKTIGEAVTQARPARLHILEKMLE 548
Query: 237 VI 238
+
Sbjct: 549 AL 550
Score = 113 bits (282), Expect = 2e-23, Method: Composition-based stats.
Identities = 53/235 (22%), Positives = 89/235 (37%), Gaps = 26/235 (11%)
Query: 10 QMREISLTRR-VSKYAEGSCLVKFGDTHLLTTAT---LEEKVPMWIRNTKHGWITAEYGM 65
REI LT R + A GS L++ GDT +L TAT E + + G
Sbjct: 11 DGREIRLTTRRYAPQAGGSVLIECGDTAVLVTATRANGREGIDFLPLTCDYEERLYAAGR 70
Query: 66 LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125
+P S R R R+ R+I R +R + QI+ +
Sbjct: 71 IPGSFMRR------ESRPPERATLACRLIDRPIRPLFPSWMRDDLQIVATVMSVDERVPP 124
Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185
A+TGA +A +AA+ G+L I++ Y E
Sbjct: 125 DVLAVTGASLATLLAKIPFYG-------------PMAAVRVGLLGDDFILNPSYREIERS 171
Query: 186 DVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
++D T G +V V+ A++ ++ ++ + + +LI+ QK+ I+
Sbjct: 172 ELDLVVAGTAEG-VVMVEAGAQQ--LPEEDMIEAIDFGYEAVLELIRHQKETIAE 223
>gi|254431498|ref|ZP_05045201.1| 3' exoribonuclease family, domain 2 [Cyanobium sp. PCC 7001]
gi|197625951|gb|EDY38510.1| 3' exoribonuclease family, domain 2 [Cyanobium sp. PCC 7001]
Length = 708
Score = 138 bits (347), Expect = 6e-31, Method: Composition-based stats.
Identities = 45/242 (18%), Positives = 88/242 (36%), Gaps = 19/242 (7%)
Query: 2 RLSGRQENQMREISLTRRVSK-YAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
R+ GR +++R I V GS L + G T +L+ ATL + + + +
Sbjct: 321 RVDGRNLDEVRPIQAAAGVLPKRVHGSALFQRGLTQVLSCATLGTPSDAQEMDDLNPSTE 380
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P STG + R+ G RAL V+ + +
Sbjct: 381 KTYLHHYNFPPYSTGETKPMRSPGRREIGHGAL----AERALVPVLPAKESFPYVLRVVS 436
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+ + ++G T ++ G+ +AL D ++ + + + +G + D
Sbjct: 437 ECLSSNGSTSMGSVCGSTLALMDAGVPLKAPVSGAAMGLIKEGEEV---------RILTD 487
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T+ G I +Q + + +N A+ +++ +
Sbjct: 488 IQGIEDFLGDMDFKVAGTEKG-ITALQMDMKITGLAVGTVAEAVNQARPARLHILEKMLE 546
Query: 237 VI 238
I
Sbjct: 547 AI 548
Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats.
Identities = 52/235 (22%), Positives = 89/235 (37%), Gaps = 26/235 (11%)
Query: 10 QMREISLTRR-VSKYAEGSCLVKFGDTHLLTTAT---LEEKVPMWIRNTKHGWITAEYGM 65
REI LT + A GS +V+ GDT +L TAT E + + G
Sbjct: 11 DGREIRLTTGRFAPQAGGSVMVECGDTAVLVTATRSGGREGIDFLPLICDYEERLYAAGR 70
Query: 66 LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125
+P S R R R+ I R+I R +R + QI+ C +
Sbjct: 71 IPGSFMRR------ESRPPERATLIARLIDRPMRPLFPGWMRDDLQIVATCLSLDERVPP 124
Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185
A+TGA +A +AA+ G+L +++ Y E
Sbjct: 125 DVLAVTGASMATLLAKIPFHG-------------PMAAVRVGLLGDDFVLNPSYREIERS 171
Query: 186 DVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
D+D T G ++ V+ A + + ++ + +++LIK Q+ ++ +
Sbjct: 172 DLDLVVAGTPQG-VIMVEAGANQ--LPEQDVIEGIDFGYEAVSELIKAQQALLKD 223
>gi|261878984|ref|ZP_06005411.1| polyribonucleotide nucleotidyltransferase [Prevotella bergensis DSM
17361]
gi|270334369|gb|EFA45155.1| polyribonucleotide nucleotidyltransferase [Prevotella bergensis DSM
17361]
Length = 616
Score = 138 bits (347), Expect = 6e-31, Method: Composition-based stats.
Identities = 48/244 (19%), Positives = 83/244 (34%), Gaps = 18/244 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56
+RL GR +R I GS + + G+T L+T T L+EK+ + N +
Sbjct: 323 LRLDGRGTTDIRPIWCEVSPLPMPHGSAIFQRGETMSLSTCTLGTKLDEKLVDNVLNRGY 382
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P STG + V R+ G R I + + +
Sbjct: 383 QRFLLHYNFPPFSTGEAKAQRGVGRREIGHGHLAWRGIKDQIP------EDFPYTVRLVS 436
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+++++G + A + +AL D M+ + + G + D
Sbjct: 437 QILESNGSSSMATVCAGTLALMDAGVPMKKPVAGIAMGLIKN-------PGEDKYAILSD 489
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T G + Q + S + L AKD ++
Sbjct: 490 ILGDEDHLGDMDFKTTGTKDG-LTATQMDIKCDGLSFEILEKALMQAKDAREHIMGEMMK 548
Query: 237 VISN 240
+S
Sbjct: 549 TLSE 552
Score = 103 bits (257), Expect = 2e-20, Method: Composition-based stats.
Identities = 39/241 (16%), Positives = 75/241 (31%), Gaps = 26/241 (10%)
Query: 3 LSGRQENQMREISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
GR IS+ V+K A+G+ +++ G+T LL T ++
Sbjct: 11 PDGRT------ISIETGKVAKQADGAAVLRLGNTVLLATVCAAKEAVPGTDFMPLQVDYR 64
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
E G+ R+I RALR + + +
Sbjct: 65 EQYSAAGRFP--GGFTKREGKPSDEEILTSRLIDRALRPLFPADYHCEVYVQVMLLSADG 122
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
A A A+ ++ + + G +++ + +
Sbjct: 123 VDQPDALAGFAASAAMAC-------------SDIPFDYTISEVRVARVNGEFVINPTFQQ 169
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
D+D T +I+ V+ E + A L A + I + LQ++ +S E
Sbjct: 170 MEEADMDLMVGATKD-NIMMVE--GEMKEVQETDLIAALKAAHEAIKPMCVLQEE-LSKE 225
Query: 242 V 242
+
Sbjct: 226 L 226
>gi|123966596|ref|YP_001011677.1| polynucleotide phosphorylase/polyadenylase [Prochlorococcus marinus
str. MIT 9515]
gi|187610313|sp|A2BXQ9|PNP_PROM5 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|123200962|gb|ABM72570.1| polyribonucleotide nucleotidyltransferase [Prochlorococcus marinus
str. MIT 9515]
Length = 721
Score = 138 bits (347), Expect = 6e-31, Method: Composition-based stats.
Identities = 42/242 (17%), Positives = 88/242 (36%), Gaps = 19/242 (7%)
Query: 2 RLSGRQENQMREISLTRRVSK-YAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
R+ GR +++R+IS + GS + + G T +L+T TL + + + +
Sbjct: 323 RVDGRDLDEVRKISAKAGILPKRVHGSAVFQRGLTQVLSTTTLGTPSDAQEMDDLNPSTE 382
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P S G R+ G RA+ V+ + +
Sbjct: 383 KTYLHHYNFPPYSVGETRPMRTPGRREIGHGAL----AERAIIPVLPGKETFPYVLRVVS 438
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V+ ++G T ++ G+ ++L D ++ + + + +G + D
Sbjct: 439 EVLSSNGSTSMGSVCGSTLSLLDAGVPLKAPVSGTAMGLIKEGKEV---------RILTD 489
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T+ G I +Q + + A+ +++ +D
Sbjct: 490 IQGIEDFLGDMDFKVAGTEKG-ITALQMDMKITGLPVSIISDAIKKARPARLHILEKMQD 548
Query: 237 VI 238
I
Sbjct: 549 AI 550
Score = 101 bits (250), Expect = 1e-19, Method: Composition-based stats.
Identities = 54/235 (22%), Positives = 91/235 (38%), Gaps = 26/235 (11%)
Query: 10 QMREISLTRR-VSKYAEGSCLVKFGDTHLLTTATLE---EKVPMWIRNTKHGWITAEYGM 65
REI LT + A G+ +++ GDT LL TAT E + G
Sbjct: 11 DGREIRLTTGLYAPQANGAVMIECGDTSLLVTATKTNKKEAADFLPLICDYEEKLYAAGR 70
Query: 66 LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125
+P R GR R+ I R+I R +R + + QI+ C +
Sbjct: 71 IPGGFMRR------EGRPPERATLIARLIDRPMRPLFPIWMRDEIQIVASCLSLDERVPA 124
Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185
A+TGA +A G +AA+ G+L I++ Y E
Sbjct: 125 DVLAVTGASLAT-------------LLGEIPFYGPMAAVRVGLLGDDFILNPSYREIEKG 171
Query: 186 DVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
D+D + G IV ++ A + S+ ++ + + +LIK Q++++ +
Sbjct: 172 DLDIIVAGSPEG-IVMIEAGANQ--LSEQDTIEAIDFGYEAVTELIKAQENLLKD 223
>gi|281422610|ref|ZP_06253609.1| polyribonucleotide nucleotidyltransferase [Prevotella copri DSM
18205]
gi|281403280|gb|EFB33960.1| polyribonucleotide nucleotidyltransferase [Prevotella copri DSM
18205]
Length = 772
Score = 138 bits (347), Expect = 7e-31, Method: Composition-based stats.
Identities = 47/244 (19%), Positives = 84/244 (34%), Gaps = 18/244 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
+RL GR +R I GS + + G+T L+T TL +EK+ + +
Sbjct: 323 LRLDGRATTDIRPIWCEVSPLPMPHGSAIFQRGETMSLSTCTLGTKMDEKLIDGVLEKSY 382
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P STG + V R+ G R L+ + + +
Sbjct: 383 QRFLLHYNFPPFSTGEAKAQRGVGRREIGHGHL----AWRGLKGQIPTD--FPYTVRLVS 436
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+++++G + A + +AL D M+ + + + G + D
Sbjct: 437 QILESNGSSSMATVCAGTLALMDAGVPMKKPVSGIAMGLIKN-------PGEDKYAILSD 489
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T G + Q + S + L AK ++ +
Sbjct: 490 ILGDEDHLGDMDFKTTGTRDG-LTATQMDIKCDGLSFEILEEALMQAKAGREHILNCMME 548
Query: 237 VISN 240
IS
Sbjct: 549 TISE 552
Score = 101 bits (251), Expect = 8e-20, Method: Composition-based stats.
Identities = 36/240 (15%), Positives = 76/240 (31%), Gaps = 25/240 (10%)
Query: 3 LSGRQENQMREISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
GR I++ V+K A+G+ +++ G+T LL T +
Sbjct: 11 PDGRT------ITIETGKVAKQADGAAVLRMGNTVLLATVCAAKDAVPGTDFMPLQVDYR 64
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
E G+ R++ RALR + + + +
Sbjct: 65 EQYSAAGRFP--GGFTKREGKASDEEILTSRLVDRALRPLFPSNYHAEVYVQVMLLSADG 122
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
A A A+ + +++ + + G +V+ + +
Sbjct: 123 VDQPDALAGFAASAAMAC-------------SDIPFEYYISEVRVARINGEYVVNPTFQQ 169
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
D+D T +I+ V+ E S+ L +A + I + +LQ ++ +
Sbjct: 170 MEEADMDIMVGATKD-NIMMVE--GEMKEVSEQDLIGALKVAAEAIKPMCELQYELAKEK 226
>gi|282899414|ref|ZP_06307381.1| 3' exoribonuclease [Cylindrospermopsis raciborskii CS-505]
gi|281195678|gb|EFA70608.1| 3' exoribonuclease [Cylindrospermopsis raciborskii CS-505]
Length = 718
Score = 138 bits (347), Expect = 7e-31, Method: Composition-based stats.
Identities = 47/244 (19%), Positives = 90/244 (36%), Gaps = 20/244 (8%)
Query: 1 MRLSGRQENQMREISLTRRVSKY-AEGSCLVKFGDTHLLTTATLE-----EKVPMWIRNT 54
+R+ GR+ +++R +S V GS L G T +L+ TL + + ++
Sbjct: 322 VRVDGRKLDEVRPVSSQVGVLPRRVHGSGLFNRGLTQVLSACTLGTPGDAQSLSDDLQVD 381
Query: 55 KHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIII 114
+ Y P S G A R+ G RA+ V+ I +
Sbjct: 382 QSKRYLHHYNFPPFSVGETKPLRAPGRREIGHGAL----AERAILPVLPTKEQFPYVIRV 437
Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPI 174
+V+ ++G T ++ G+ +AL D + + + + +G +
Sbjct: 438 VSEVLSSNGSTSMGSVCGSTLALMDAGVPITKPVSGAAMGLIKEGSEVRVLTD------- 490
Query: 175 VDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
+ ED D+D TD+G I +Q + + S D + A+D +++
Sbjct: 491 --IQGIEDFLGDMDFKVAGTDTG-ITALQMDMKISGLSLDVIKQAVEQARDARLHILEKM 547
Query: 235 KDVI 238
I
Sbjct: 548 LQTI 551
Score = 103 bits (256), Expect = 2e-20, Method: Composition-based stats.
Identities = 52/235 (22%), Positives = 87/235 (37%), Gaps = 26/235 (11%)
Query: 10 QMREISLTRRV-SKYAEGSCLVKFGDTHLLTTAT---LEEKVPMWIRNTKHGWITAEYGM 65
R+I L + + A GS L++ GDT +L TAT E V + G
Sbjct: 11 DGRDIRLKVGLLAPQAGGSVLIESGDTAVLVTATRSEAREGVDFLPLTVDYEERLYAAGR 70
Query: 66 LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125
+P R GR R+ R+I R LR + QII +
Sbjct: 71 IPGGIMRR------EGRPPERAILTSRLIDRPLRPLFPSWLRDDLQIIALTLSMDELVPP 124
Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185
A+TGA +A +AA+ G++ I++ Y E
Sbjct: 125 DVLAVTGASIATLIAQIPFYG-------------PMAAVRVGLVGDDFIINPTYAEIEAG 171
Query: 186 DVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
D+D + G ++ V+ A + + ++ + + DLI+ Q+D+I+
Sbjct: 172 DLDLVVAGSPDG-VIMVEAGANQ--LPERDIIEAIDFGYEAVRDLIQAQRDLIAE 223
>gi|15920655|ref|NP_376324.1| exosome complex exonuclease Rrp41 [Sulfolobus tokodaii str. 7]
gi|29336896|sp|Q975G8|ECX1_SULTO RecName: Full=Probable exosome complex exonuclease 1
gi|15621438|dbj|BAB65433.1| 247aa long hypothetical ribonuclease PH [Sulfolobus tokodaii str.
7]
Length = 247
Score = 138 bits (347), Expect = 7e-31, Method: Composition-based stats.
Identities = 58/243 (23%), Positives = 105/243 (43%), Gaps = 23/243 (9%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKV-PMWIRNTKHGWI 59
+RL GR+ ++MR I + V K A+GS + + G+T ++ +++ P + +
Sbjct: 19 LRLDGRKPDEMRPIKIELGVLKNADGSAIFEMGNTKVIAAVYGPKEMHPRHLALPDRAVL 78
Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119
Y M P ST R + R E+ ++I AL S + + I + +V+
Sbjct: 79 RVRYHMTPFSTDERK-----NPAPSRREIELSKVIREALESTILVELFPRTVIDVFMEVL 133
Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179
QAD GTR ++ A +AL D M D +A ++ G G ++DL+
Sbjct: 134 QADAGTRLVSLMAASMALADAGIPMRDL-------------IAGVAVGKADGVLVLDLNE 180
Query: 180 GEDSTIDVDANF-VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
ED + D +M + +Q + + F L +A+ I + L+K+ I
Sbjct: 181 PEDMWGEADMPVAMMPSLKQVALLQLNGN---MTPQEFRQALEMAQKGIETIYNLEKEAI 237
Query: 239 SNE 241
++
Sbjct: 238 RSK 240
>gi|116073519|ref|ZP_01470781.1| polyribonucleotide nucleotidyltransferase [Synechococcus sp.
RS9916]
gi|116068824|gb|EAU74576.1| polyribonucleotide nucleotidyltransferase [Synechococcus sp.
RS9916]
Length = 721
Score = 138 bits (347), Expect = 7e-31, Method: Composition-based stats.
Identities = 47/242 (19%), Positives = 90/242 (37%), Gaps = 19/242 (7%)
Query: 2 RLSGRQENQMREISLTRRVSK-YAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
R+ GR +++R IS V GS L + G T +L+TATL + + + +
Sbjct: 323 RVDGRALDEVRTISAAAGVLPKRVHGSGLFQRGLTQVLSTATLGTPSDAQEMDDLNPSNE 382
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P S G + R+ G RA+ V+ + +
Sbjct: 383 KTYLHHYNFPPYSVGETRPMRSPGRREIGHGAL----AERAIIPVLPAKDTFPYVVRVVS 438
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V+ ++G T ++ G+ +AL D ++ + + + +G + D
Sbjct: 439 EVLSSNGSTSMGSVCGSTLALMDAGVPLKSPVSGAAMGLIKEGDEV---------RILTD 489
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D TD G I +Q + + +N A+ +++ +
Sbjct: 490 IQGIEDFLGDMDFKVAGTDKG-ITALQMDMKITGLPVNTVADAVNQARPARLHILEKMME 548
Query: 237 VI 238
I
Sbjct: 549 AI 550
Score = 113 bits (281), Expect = 3e-23, Method: Composition-based stats.
Identities = 54/235 (22%), Positives = 90/235 (38%), Gaps = 26/235 (11%)
Query: 10 QMREISLTRR-VSKYAEGSCLVKFGDTHLLTTAT---LEEKVPMWIRNTKHGWITAEYGM 65
REI LT + A GS +++ GDT +L TAT E + + G
Sbjct: 11 DGREIRLTTGRYAPQAGGSVMIECGDTSVLVTATRSSGREGIDFLPLICDYEERLYAAGR 70
Query: 66 LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125
+P S R GR R+ I R+I R +R + QI+ C +
Sbjct: 71 IPGSFMRR------EGRPPERATLISRLIDRPMRPLFPNWLRDDLQIVATCMSLDERVPA 124
Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185
A+TGA +A +G +AA+ G+L +++ Y E
Sbjct: 125 DVLAVTGASLATLMAGI-------------PFQGPMAAVRVGLLGDDFVLNPSYREIERG 171
Query: 186 DVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
D+D T G +V V+ A + + ++ + + +LIK Q+ ++
Sbjct: 172 DLDLVVAGTPEG-VVMVEAGANQ--LPEQDVIEAIDFGYEAVCELIKAQQAILKE 223
>gi|224023647|ref|ZP_03642013.1| hypothetical protein BACCOPRO_00354 [Bacteroides coprophilus DSM
18228]
gi|224016869|gb|EEF74881.1| hypothetical protein BACCOPRO_00354 [Bacteroides coprophilus DSM
18228]
Length = 719
Score = 138 bits (346), Expect = 8e-31, Method: Composition-based stats.
Identities = 48/243 (19%), Positives = 84/243 (34%), Gaps = 18/243 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHG 57
RL GR +R I GS + G+T L+T T L+EK+ + +
Sbjct: 319 RLDGRATTDIRPIWCEVSPLPGPHGSSIFTRGETQSLSTVTLGTKLDEKIVDDVLDQHKE 378
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P STG + V R+ G RAL+ + + + D
Sbjct: 379 RFLLHYNFPPFSTGEAKAQRGVGRREIGHGHL----AWRALKGQIP--ENYPYCVRVVSD 432
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+++++G + A + +AL D ++ + + + G + D+
Sbjct: 433 ILESNGSSSMATVCAGTLALMDAGVPIKKPVSGIAMGLIKN-------AGEDKYAVLSDI 485
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T G I Q + + D L AK ++ +
Sbjct: 486 LGDEDHLGDMDFKVTGTRDG-ITATQMDIKCDGLTYDILEKALLQAKQGREYILGKLTEC 544
Query: 238 ISN 240
I+
Sbjct: 545 IAE 547
Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats.
Identities = 37/236 (15%), Positives = 73/236 (30%), Gaps = 20/236 (8%)
Query: 8 ENQMREISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGML 66
R I+L ++K A+G+ +++ G+T LL T + E
Sbjct: 11 LGDGRTITLETGKLAKQADGAVMLRMGNTMLLATVCAAKDAVPGTDFMPLQVEYREKYSA 70
Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
G+ R++ RALR + +
Sbjct: 71 FGRFP--GGFTKREGKASDYEILTCRLVDRALRPLFPDNYHAEVY-------------VN 115
Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
+ V + D L + + G ++ + + G +++ + D
Sbjct: 116 IILFSADGVDMPDALAGLAASAALAVSDIPFGGPISEVRVARIDGQFVINPTFEALERAD 175
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNEV 242
+D T +I+ V+ E S+ A + A + I K Q + + EV
Sbjct: 176 MDIMVAATYE-NIMMVE--GEMKEVSEQDLLAAMKFAHEAIKVHCKAQME-LMEEV 227
>gi|108799067|ref|YP_639264.1| polynucleotide phosphorylase/polyadenylase [Mycobacterium sp. MCS]
gi|119868182|ref|YP_938134.1| polynucleotide phosphorylase/polyadenylase [Mycobacterium sp. KMS]
gi|126434670|ref|YP_001070361.1| polynucleotide phosphorylase/polyadenylase [Mycobacterium sp. JLS]
gi|123178942|sp|Q1BA76|PNP_MYCSS RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|187610288|sp|A3PY93|PNP_MYCSJ RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|187610289|sp|A1UET6|PNP_MYCSK RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|108769486|gb|ABG08208.1| Polyribonucleotide nucleotidyltransferase [Mycobacterium sp. MCS]
gi|119694271|gb|ABL91344.1| Polyribonucleotide nucleotidyltransferase [Mycobacterium sp. KMS]
gi|126234470|gb|ABN97870.1| Polyribonucleotide nucleotidyltransferase [Mycobacterium sp. JLS]
Length = 759
Score = 138 bits (346), Expect = 8e-31, Method: Composition-based stats.
Identities = 43/242 (17%), Positives = 82/242 (33%), Gaps = 10/242 (4%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKH 56
R+ GR +R +S + A GS L + G+T +L TL+ + +
Sbjct: 342 FRIDGRGVTDIRALSAEVAIVPRAHGSALFERGETQILGVTTLDMVKMAQQIDSLGPETS 401
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P STG + + R+ G RAL V+ I
Sbjct: 402 KRYMHHYNFPPYSTGETGRVGSPKRREIGHGAL----AERALMPVLPSVEEFPYAIRQVS 457
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+ + ++G T ++ + ++L + ++ + V V + D
Sbjct: 458 EALSSNGSTSMGSVCASTLSLLNAGVPLKAPVAGIAMGLVSD-DVEVDGKTERRFVTLTD 516
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED+ D+D T + +Q + L AKD ++++ +
Sbjct: 517 ILGAEDAFGDMDFKCAGTKDF-VTALQLDTKLDGIPSQVLAGALAQAKDARITILEVMAE 575
Query: 237 VI 238
I
Sbjct: 576 AI 577
>gi|283780454|ref|YP_003371209.1| ribonuclease PH [Pirellula staleyi DSM 6068]
gi|283438907|gb|ADB17349.1| ribonuclease PH [Pirellula staleyi DSM 6068]
Length = 247
Score = 138 bits (346), Expect = 8e-31, Method: Composition-based stats.
Identities = 107/239 (44%), Positives = 153/239 (64%), Gaps = 6/239 (2%)
Query: 6 RQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGM 65
R +++R I + R +K + GS L++ G+T +L TA+++ KVP W+ GWITAEY M
Sbjct: 3 RTASELRPIKIKRNYTKMSPGSVLIEAGETVVLCTASVDAKVPDWLAGKGKGWITAEYNM 62
Query: 66 LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125
LP ST R +++ + GR+ EIQR+IGR+LR+V+DL ALG R + +DCDV+QADGGT
Sbjct: 63 LPHST--RPRKQRERAKTDGRTTEIQRLIGRSLRAVIDLEALGERLLQVDCDVLQADGGT 120
Query: 126 RTAAITGAWVALHDCLQHME----DCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
RTA+ITGA++A+ D ++ ++ + N VL VAAIS G++ G P +DL+Y +
Sbjct: 121 RTASITGAFIAVVDAIRSIKGDANNPKNLPITRPVLLDSVAAISVGIVEGKPTLDLEYVQ 180
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
D DVD N VMT SG VE+QG+ E ATF A+L LA+ I L +QK +
Sbjct: 181 DVDADVDMNVVMTGSGKFVEIQGTGEEATFDDAQLAALLKLARQGITQLTTIQKTALGK 239
>gi|257784591|ref|YP_003179808.1| Polyribonucleotide nucleotidyltransferase [Atopobium parvulum DSM
20469]
gi|257473098|gb|ACV51217.1| Polyribonucleotide nucleotidyltransferase [Atopobium parvulum DSM
20469]
Length = 732
Score = 138 bits (346), Expect = 8e-31, Method: Composition-based stats.
Identities = 44/241 (18%), Positives = 84/241 (34%), Gaps = 18/241 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR N++R I + GS L + G T +L+ TL E + I
Sbjct: 319 RVDGRVANEIRPIMVKPDYLPLVHGSGLFQRGQTQVLSICTLGMLNEWQRLDTIEPMDGK 378
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P TG + + R+ G RAL V+ I + +
Sbjct: 379 RYIHHYNFPPFCTGETGRMGSPKRREIGHGAL----AERALLPVIPSEEEFPYTIRVVSE 434
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
V++++G + A+ G+ ++L D ++ + + + + + +
Sbjct: 435 VMESNGSSSMASTCGSTLSLMDAGVPLKRPVSGVAMGLIQENGKTVVLTD---------I 485
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T G I +Q + + + L A + ++ +
Sbjct: 486 QGLEDFLGDMDFKVCGTTKG-ITAMQMDNKATGLTPEILRNALMQAHEGRMFILNKMLEQ 544
Query: 238 I 238
I
Sbjct: 545 I 545
Score = 86.1 bits (211), Expect = 4e-15, Method: Composition-based stats.
Identities = 46/230 (20%), Positives = 80/230 (34%), Gaps = 24/230 (10%)
Query: 15 SLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKV---PMWIRNTKHGWITAEYGMLPRST 70
+L ++K A G+C+VK GD+ +L TA + ++ + G +P
Sbjct: 16 TLEAGELAKQATGACIVKCGDSTVLLTAVVSKERKDYDFFPLTVDFIEKMYAVGRVPGGY 75
Query: 71 GNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAI 130
R R ++ RMI R LR QI+ V T ++
Sbjct: 76 LKR------EARPSEKATLTARMIDRPLRPSFPEGFRNEVQIVATSLVADQVNAVDTISV 129
Query: 131 TGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDAN 190
GA AL E + I G +V+ Y E D+D
Sbjct: 130 MGASAALAVGGVPFEGPLACVR-----------IGRNADTGEFLVNPTYEERDHSDLDLE 178
Query: 191 FVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
+ + I ++ A+ S++ + + ++ IA + QK I+
Sbjct: 179 LGGSSTF-ISMLEAGADE--ISEEDMLSAMAFGQEAIAAFCEEQKKFIAK 225
>gi|306823630|ref|ZP_07457005.1| polyribonucleotide nucleotidyltransferase [Bifidobacterium dentium
ATCC 27679]
gi|304553337|gb|EFM41249.1| polyribonucleotide nucleotidyltransferase [Bifidobacterium dentium
ATCC 27679]
Length = 880
Score = 138 bits (346), Expect = 9e-31, Method: Composition-based stats.
Identities = 45/241 (18%), Positives = 86/241 (35%), Gaps = 14/241 (5%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +R +S + GS L + G+T +L +TL E+ + +
Sbjct: 346 RIDGRGLRDIRTLSAEVDIVPRVHGSALFQRGETQILGVSTLNMLKMEQQIDALSGPQSK 405
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y M P STG + + R+ G +AL V+ I +
Sbjct: 406 RYMHNYEMPPYSTGETGRVGSPKRREIGHGAL----AEKALVPVLPSREEFPYAIRQVSE 461
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
I ++G T ++ + ++L ++ + V + G + D+
Sbjct: 462 AIGSNGSTSMGSVCASTLSLLAAGVPLKAPVAGIAMGLV-----SGDVDGQHIFKTLTDI 516
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED+ D+D T I +Q + D + L AK+ ++++ +
Sbjct: 517 LGAEDAFGDMDFKVAGTSEF-ITALQLDTKLDGIPADILASALQQAKEARTTILEVINEC 575
Query: 238 I 238
I
Sbjct: 576 I 576
>gi|283455304|ref|YP_003359868.1| polyribonucleotide nucleotidyltransferase [Bifidobacterium dentium
Bd1]
gi|283101938|gb|ADB09044.1| Pnp Polyribonucleotide nucleotidyltransferase [Bifidobacterium
dentium Bd1]
Length = 880
Score = 138 bits (346), Expect = 9e-31, Method: Composition-based stats.
Identities = 45/241 (18%), Positives = 86/241 (35%), Gaps = 14/241 (5%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +R +S + GS L + G+T +L +TL E+ + +
Sbjct: 346 RIDGRGLRDIRTLSAEVDIVPRVHGSALFQRGETQILGVSTLNMLKMEQQIDALSGPQSK 405
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y M P STG + + R+ G +AL V+ I +
Sbjct: 406 RYMHNYEMPPYSTGETGRVGSPKRREIGHGAL----AEKALVPVLPSREEFPYAIRQVSE 461
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
I ++G T ++ + ++L ++ + V + G + D+
Sbjct: 462 AIGSNGSTSMGSVCASTLSLLAAGVPLKAPVAGIAMGLV-----SGDVDGQHIFKTLTDI 516
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED+ D+D T I +Q + D + L AK+ ++++ +
Sbjct: 517 LGAEDAFGDMDFKVAGTSEF-ITALQLDTKLDGIPADILASALQQAKEARTTILEVINEC 575
Query: 238 I 238
I
Sbjct: 576 I 576
>gi|197294708|ref|YP_001799249.1| polynucleotide phosphorylase/polyadenylase [Candidatus Phytoplasma
australiense]
gi|226702674|sp|B1VAN5|PNP_PHYAS RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|171854035|emb|CAM12008.1| Polyribonucleotide nucleotidyltransferase [Candidatus Phytoplasma
australiense]
Length = 710
Score = 138 bits (346), Expect = 9e-31, Method: Composition-based stats.
Identities = 39/243 (16%), Positives = 81/243 (33%), Gaps = 16/243 (6%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R R ++R + + GS L G T L TL E K+ + +
Sbjct: 328 RPDKRTLEEVRNLDSQIDLLPRPHGSALFTRGQTQSLAVVTLGTLSESKIIDDLSGESNK 387
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P + G+ + A S R+ G +A+ ++ I + +
Sbjct: 388 RFMLHYNFPPFAVGSIGRYAAPSRREIGHGNL----AEKAILPLLPEENDFPYAIRVVSE 443
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+++++G + A + ++L ++ + + + + D+
Sbjct: 444 ILESNGSSSQATVCATSMSLMAAGVPLKRAVSGIAMGLFMDSKTNE-------YVILSDI 496
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D +D G I +Q + SQ AK +++
Sbjct: 497 QGLEDHIGDMDLKIAGSDKG-ITALQMDLKIEGISQAILKQAFFQAKKGRLHILEHMNKT 555
Query: 238 ISN 240
I++
Sbjct: 556 IAS 558
Score = 76.4 bits (186), Expect = 3e-12, Method: Composition-based stats.
Identities = 38/223 (17%), Positives = 81/223 (36%), Gaps = 20/223 (8%)
Query: 16 LTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGNRV 74
+ ++ + S L++F DT +LTT K + ++ + G+ +
Sbjct: 17 VEIGTYARNVDPSVLIRFQDTVVLTTTVFSNKKNNFDFLPLTVIYQEKFYAAGKIPGSFL 76
Query: 75 KREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAW 134
+R GR R+I R+LR + Q+I D + A+I G+
Sbjct: 77 RR---EGRSTDHEILSSRLIDRSLRPLFPKEFRQEIQVINTVLSSNPDFKSEIASILGSS 133
Query: 135 VALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMT 194
++L + VA + + +++ + + + + T
Sbjct: 134 LSLLISEIPFFE-------------PVAGVYVAYIQNQFVINPNAQQLTNSPLHLLVAGT 180
Query: 195 DSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
++V ++ A + S++ F + A + I L Q+DV
Sbjct: 181 KK-NVVMIE--AHASEVSEEMFLEAIVFAHEYIKKLCLFQEDV 220
>gi|171741337|ref|ZP_02917144.1| hypothetical protein BIFDEN_00416 [Bifidobacterium dentium ATCC
27678]
gi|171276951|gb|EDT44612.1| hypothetical protein BIFDEN_00416 [Bifidobacterium dentium ATCC
27678]
Length = 880
Score = 138 bits (346), Expect = 9e-31, Method: Composition-based stats.
Identities = 45/241 (18%), Positives = 86/241 (35%), Gaps = 14/241 (5%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +R +S + GS L + G+T +L +TL E+ + +
Sbjct: 346 RIDGRGLRDIRTLSAEVDIVPRVHGSALFQRGETQILGVSTLNMLKMEQQIDALSGPQSK 405
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y M P STG + + R+ G +AL V+ I +
Sbjct: 406 RYMHNYEMPPYSTGETGRVGSPKRREIGHGAL----AEKALVPVLPSREEFPYAIRQVSE 461
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
I ++G T ++ + ++L ++ + V + G + D+
Sbjct: 462 AIGSNGSTSMGSVCASTLSLLAAGVPLKAPVAGIAMGLV-----SGDVDGQHIFKTLTDI 516
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED+ D+D T I +Q + D + L AK+ ++++ +
Sbjct: 517 LGAEDAFGDMDFKVAGTSEF-ITALQLDTKLDGIPADILASALQQAKEARTTILEVINEC 575
Query: 238 I 238
I
Sbjct: 576 I 576
>gi|116330633|ref|YP_800351.1| polynucleotide phosphorylase/polyadenylase [Leptospira
borgpetersenii serovar Hardjo-bovis JB197]
gi|122281612|sp|Q04U27|PNP_LEPBJ RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|116124322|gb|ABJ75593.1| Polyribonucleotide nucleotidyltransferase [Leptospira
borgpetersenii serovar Hardjo-bovis JB197]
Length = 696
Score = 138 bits (346), Expect = 9e-31, Method: Composition-based stats.
Identities = 44/244 (18%), Positives = 84/244 (34%), Gaps = 17/244 (6%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
+R GR+ +++R IS+ GS + G T L TL + + + K
Sbjct: 313 VRFDGRRLDEIRPISVEINPLPGPHGSSVFTRGQTQSLGVVTLGTGSDNQRYETLEGQKE 372
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y S G + R+ G RAL+ V+ S I +
Sbjct: 373 KSFMLHYNFPAFSVGEVRRSSGPGRREIGHGNL----AERALKLVLPKSEEFPYVIRVVS 428
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
++++++G + A++ +AL ++ + + S + D
Sbjct: 429 EILESNGSSSMASVCSGSLALMAAGVPIKGSVSGIAMGL--------FSDSSGKYAVLSD 480
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T G I Q + S D ++ A+ ++ + +
Sbjct: 481 IAGLEDHFGDMDCKIAGTRKG-ITAFQMDLKVTGVSFDVLESVFEQAQRGRFHILDIMEK 539
Query: 237 VISN 240
IS
Sbjct: 540 HISK 543
Score = 102 bits (253), Expect = 6e-20, Method: Composition-based stats.
Identities = 51/249 (20%), Positives = 82/249 (32%), Gaps = 38/249 (15%)
Query: 5 GRQENQMREISLTRR-VSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKHGWI 59
GR I L +K A G+ + K G+ LL T E + ++
Sbjct: 10 GRDT-----IVLETGNWAKQAHGAVVYKSGNLVLLATVCAADDAKEGQDFFPLTCEYTEK 64
Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119
G P R + I R+I R +R + Q+ +
Sbjct: 65 LYSVGRFPGGYFKR------EAKPPEHEILISRIIDRPIRPLFPEGYFCEVQLQVQVLSA 118
Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179
D A+ A VA G +A G + G I++
Sbjct: 119 DGDVSVAGHALNAASVA-------------LTISDIPFNGPIAGARIGRINGELILNPTT 165
Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD--- 236
E D+D T + HIV ++G A+ S + + L A+ IA+ + LQ++
Sbjct: 166 KEIVNSDLDLVVAGTKT-HIVMIEGEAKE--LSNEEMLSALRFAQKHIAEFVTLQEEYAK 222
Query: 237 ---VISNEV 242
V+ EV
Sbjct: 223 QIGVVKREV 231
>gi|281492468|ref|YP_003354448.1| polyribonucleotide nucleotidyltransferase [Lactococcus lactis
subsp. lactis KF147]
gi|281376132|gb|ADA65623.1| Polyribonucleotide nucleotidyltransferase [Lactococcus lactis
subsp. lactis KF147]
Length = 773
Score = 138 bits (346), Expect = 9e-31, Method: Composition-based stats.
Identities = 43/246 (17%), Positives = 85/246 (34%), Gaps = 20/246 (8%)
Query: 1 MRLSGRQENQMREISLTRRVSKY--AEGSCLVKFGDTHLLTTATL----EEKVPMWIRNT 54
+R GR+ +++R + + G+ L G T L+T TL E ++ + +
Sbjct: 316 IRPDGRKIDEIRPLDAEIDFTPRNITHGTGLFTRGQTQALSTLTLAPMNEAQIIDGLNDE 375
Query: 55 KHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIII 114
Y S G + A R+ G RAL V+ I +
Sbjct: 376 YKKRFMHHYNFPQYSVGETGRYGAPGRREIGHGALG----ERALEQVLPSLEEFPYAIRL 431
Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPI 174
+V++++G + A+I +AL ++ + + +
Sbjct: 432 VAEVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISD---------GTNYTVL 482
Query: 175 VDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
D+ ED D+D T G I +Q + + + + L AK ++ +
Sbjct: 483 TDIQGLEDHFGDMDFKVAGTRDG-ITALQMDIKISGITPEILAEALAQAKTARFQILDVI 541
Query: 235 KDVISN 240
+ I+
Sbjct: 542 EATIAQ 547
Score = 109 bits (273), Expect = 2e-22, Method: Composition-based stats.
Identities = 41/232 (17%), Positives = 84/232 (36%), Gaps = 25/232 (10%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKV--PMWIRNTKHGWITAEYGMLPR 68
R +++ V+K A G+ +V++GDT +LT AT+ + + + G P
Sbjct: 13 RTLTVETGQVAKQANGAVVVRYGDTTVLTAATMGKMATGDFFPLQVNYEEKMYAAGKFPG 72
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
R R + R+I R +R + Q+I + R A
Sbjct: 73 GFNKR------EARPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDENASGRVA 126
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+ G+ +A G +A + + G I++ E ++
Sbjct: 127 AMFGSSLA-------------LAISDIPFDGPIAGVEVAYIDGEYIINPTVAEKEASSLE 173
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
+ + I V+ A+ S++ L + + +LI+ Q ++++
Sbjct: 174 LSVAGNIN-AINMVESGAKE--LSEEVMLGALLAGHNAVKELIEFQNEIVAK 222
>gi|148380367|ref|YP_001254908.1| polyribonucleotide nucleotidyltransferase [Clostridium botulinum A
str. ATCC 3502]
gi|153933900|ref|YP_001384587.1| polynucleotide phosphorylase/polyadenylase [Clostridium botulinum A
str. ATCC 19397]
gi|153934955|ref|YP_001388103.1| polynucleotide phosphorylase/polyadenylase [Clostridium botulinum A
str. Hall]
gi|187610255|sp|A7FVY7|PNP_CLOB1 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|187610257|sp|A5I4I7|PNP_CLOBH RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|148289851|emb|CAL83959.1| polyribonucleotide nucleotidyltransferase [Clostridium botulinum A
str. ATCC 3502]
gi|152929944|gb|ABS35444.1| polyribonucleotide nucleotidyltransferase [Clostridium botulinum A
str. ATCC 19397]
gi|152930869|gb|ABS36368.1| polyribonucleotide nucleotidyltransferase [Clostridium botulinum A
str. Hall]
Length = 702
Score = 138 bits (346), Expect = 9e-31, Method: Composition-based stats.
Identities = 47/243 (19%), Positives = 85/243 (34%), Gaps = 16/243 (6%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHG 57
R GR +++R IS + G+ L G T ++T AT + ++ I +
Sbjct: 312 RPDGRAFDEVRPISCEVGILPRTHGTGLFTRGLTQVMTVATLGALGDVQILDGIAEEESK 371
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y S G R+ G RAL ++ + I + +
Sbjct: 372 RYMHHYNFPSYSVGEVRPLRGPGRREIGHGAL----AERALEPLIPSQSEFPYTIRLVSE 427
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
V+ ++G T A++ G+ +AL D ++ + + + + I D+
Sbjct: 428 VLSSNGSTSQASVCGSTLALLDAGVPIKRPAAGIAMGLITSED-------LEKEKVITDI 480
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T+ G I +Q + S L AK ++ K+
Sbjct: 481 QGIEDFFGDMDFKVAGTEKG-ITSIQFDTKIKGLSNSCVKDALEGAKKARLHILGKIKEC 539
Query: 238 ISN 240
I
Sbjct: 540 IPE 542
Score = 86.4 bits (212), Expect = 3e-15, Method: Composition-based stats.
Identities = 37/236 (15%), Positives = 82/236 (34%), Gaps = 31/236 (13%)
Query: 12 REISL---TRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----HGWITAEYG 64
R++ + + A + + +GDT ++ A ++ I + G
Sbjct: 12 RKMKVDFGKTGMLSNA--AIFMSYGDTVVMINANASKEPREGIDFFPLSVEYEERLYSVG 69
Query: 65 MLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGG 124
+P R G+ +S R I R LR + QI+ ++ D
Sbjct: 70 KIPGGFIKR------EGKPSDKSILHARSIDRPLRPLFPKGYRNDVQIVNTVLSVEQDNL 123
Query: 125 TRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDST 184
AI G+ +AL S VAA+S G++ G I++ +
Sbjct: 124 PEILAINGSSLALC-------------LSSIPFTTPVAAVSVGLVDGEFIINPTVAQREN 170
Query: 185 IDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
+D T ++ V+ + ++ ++ + + +++ Q++ ++
Sbjct: 171 TILDLTVCATKE-RVMMVEAGGQE--IDEETMYSAIMFGFEECKNIVAFQEEAVAK 223
>gi|116328709|ref|YP_798429.1| polynucleotide phosphorylase/polyadenylase [Leptospira
borgpetersenii serovar Hardjo-bovis L550]
gi|122283506|sp|Q04ZJ9|PNP_LEPBL RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|116121453|gb|ABJ79496.1| Polyribonucleotide nucleotidyltransferase [Leptospira
borgpetersenii serovar Hardjo-bovis L550]
Length = 696
Score = 138 bits (346), Expect = 9e-31, Method: Composition-based stats.
Identities = 44/244 (18%), Positives = 83/244 (34%), Gaps = 17/244 (6%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
+R GR+ +++R IS+ GS + G T L TL + + + K
Sbjct: 313 VRFDGRRLDEIRPISVEINPLPGPHGSSVFTRGQTQSLGVVTLGTGSDNQRYETLEGQKE 372
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y S G + R+ G RAL+ V+ S I +
Sbjct: 373 KSFMLHYNFPAFSVGEVRRSSGPGRREIGHGNL----AERALKLVLPKSEEFPYVIRVVS 428
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
++++++G + A++ +AL ++ + S + D
Sbjct: 429 EILESNGSSSMASVCSGSLALMAAGVPIKGSVAGIAMGL--------FSDSSGKYAVLSD 480
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T G I Q + S D ++ A+ ++ + +
Sbjct: 481 IAGLEDHFGDMDCKIAGTRKG-ITAFQMDLKVTGVSFDVLESVFEQAQRGRFHILDIMEK 539
Query: 237 VISN 240
IS
Sbjct: 540 HISK 543
Score = 102 bits (253), Expect = 6e-20, Method: Composition-based stats.
Identities = 51/249 (20%), Positives = 82/249 (32%), Gaps = 38/249 (15%)
Query: 5 GRQENQMREISLTRR-VSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKHGWI 59
GR I L +K A G+ + K G+ LL T E + ++
Sbjct: 10 GRDT-----IVLETGNWAKQAHGAVVYKSGNLVLLATVCAADDAKEGQDFFPLTCEYTEK 64
Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119
G P R + I R+I R +R + Q+ +
Sbjct: 65 LYSVGRFPGGYFKR------EAKPPEHEILISRIIDRPIRPLFPEGYFCEVQLQVQVLSA 118
Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179
D A+ A VA G +A G + G I++
Sbjct: 119 DGDVSVAGHALNAASVA-------------LTISDIPFNGPIAGARIGRINGELILNPTT 165
Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD--- 236
E D+D T + HIV ++G A+ S + + L A+ IA+ + LQ++
Sbjct: 166 KEIVNSDLDLVVAGTKT-HIVMIEGEAKE--LSNEEMLSALRFAQKHIAEFVTLQEEYAK 222
Query: 237 ---VISNEV 242
V+ EV
Sbjct: 223 QIGVVKREV 231
>gi|256379820|ref|YP_003103480.1| polynucleotide phosphorylase/polyadenylase [Actinosynnema mirum DSM
43827]
gi|255924123|gb|ACU39634.1| guanosine pentaphosphate synthetase I/polyribonucleotide
nucleotidyltransferase [Actinosynnema mirum DSM 43827]
Length = 747
Score = 138 bits (346), Expect = 9e-31, Method: Composition-based stats.
Identities = 42/242 (17%), Positives = 86/242 (35%), Gaps = 14/242 (5%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
+R+ GR +R + + GS L + G+T +L TL E+ + H
Sbjct: 338 VRIDGRGLTDIRSLGAEVAIIPRTHGSALFERGETQILGVTTLNMLRMEQQIDSLSPETH 397
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P STG + + R+ G RAL V+ I
Sbjct: 398 KRYLHHYNFPPYSTGETGRVGSPKRREIGHGAL----AERALMPVLPKRDEFPYAIRQVS 453
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+ + ++G T ++ + ++L + ++ + + V G + D
Sbjct: 454 EALGSNGSTSMGSVCASTMSLLNAGVPLKAPVSGIAMGLVSDE-----VDGKTEYVALTD 508
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED+ D+D T + +Q + + + L+ A+D ++++ +
Sbjct: 509 ILGAEDAFGDMDFKVAGTKQF-VTALQLDTKLDGIPSEVLASALSQARDARLAILEVMAE 567
Query: 237 VI 238
I
Sbjct: 568 AI 569
Score = 72.2 bits (175), Expect = 6e-11, Method: Composition-based stats.
Identities = 38/240 (15%), Positives = 66/240 (27%), Gaps = 38/240 (15%)
Query: 12 REISLTRR-VSKYAEGSCLVKF-GDTHLLTTATLE----EKVPMWIRNTKHGWITAEYGM 65
R I +++ A GS + +T LL+ T E + G
Sbjct: 21 RTIRFETGHLARQAAGSVVAYLDDETMLLSATTASKAPKEHFDFFPLTVDVEERMYAAGR 80
Query: 66 LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125
+P S R GR + R+I R LR Q++I +
Sbjct: 81 IPGSFFRR------EGRPSTDAILTCRLIDRPLRPSFVDGLRNEIQVVITVMSLNPADLY 134
Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185
AI A + G + + ++ G + + +
Sbjct: 135 DVVAINAASASTQLAG-------------LPFSGPIGGVRVALIEGQWVAFPTHEQLENA 181
Query: 186 DVDANFVM---TDSGHIVEVQGSAERATF----------SQDHFFAMLNLAKDRIADLIK 232
D D I+ V+ A +++ A L +K I L +
Sbjct: 182 VFDMVVAGRVVGDDVAIMMVEAEATEKVIDLIGEGAQAPTEEVVAAGLEASKPFIKVLCE 241
>gi|315229927|ref|YP_004070363.1| exosome complex exonuclease 1 [Thermococcus barophilus MP]
gi|315182955|gb|ADT83140.1| exosome complex exonuclease 1 [Thermococcus barophilus MP]
Length = 246
Score = 138 bits (346), Expect = 9e-31, Method: Composition-based stats.
Identities = 60/242 (24%), Positives = 104/242 (42%), Gaps = 23/242 (9%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKV-PMWIRNTKHGWIT 60
R+ GR++ ++R I + V K A+GS +++G +L ++ P ++ +
Sbjct: 16 RIDGRKKYELRPIKMEVGVLKNADGSAYIEWGKNKILAAVYGPREIHPKHLQRPDRAILR 75
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
Y M P S R K RS EI ++I AL + L I + +V+Q
Sbjct: 76 VRYNMAPFSVEERKKPG-----PDRRSVEISKVIRGALEPAIILELFPRTAIDVFIEVLQ 130
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
AD GTR A IT A +AL D M+D V+A + G + G ++DL+
Sbjct: 131 ADAGTRVAGITAASLALADAGIPMKDL-------------VSACAAGKIEGQIVLDLNKE 177
Query: 181 EDSTIDVDANF-VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
ED+ + D +M I +Q +++ F + LA + + Q++ +
Sbjct: 178 EDNYGEADVPVAIMPIKNDITLLQMDGY---LTREEFLEAVRLAIKGAKAVYQKQREALK 234
Query: 240 NE 241
+
Sbjct: 235 EK 236
>gi|309802878|ref|ZP_07696979.1| guanosine pentaphosphate ligase I/polyribonucleotide
nucleotidyltransferase [Bifidobacterium dentium
JCVIHMP022]
gi|308220345|gb|EFO76656.1| guanosine pentaphosphate ligase I/polyribonucleotide
nucleotidyltransferase [Bifidobacterium dentium
JCVIHMP022]
Length = 763
Score = 138 bits (346), Expect = 1e-30, Method: Composition-based stats.
Identities = 45/241 (18%), Positives = 86/241 (35%), Gaps = 14/241 (5%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +R +S + GS L + G+T +L +TL E+ + +
Sbjct: 346 RIDGRGLRDIRTLSAEVDIVPRVHGSALFQRGETQILGVSTLNMLKMEQQIDALSGPQSK 405
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y M P STG + + R+ G +AL V+ I +
Sbjct: 406 RYMHNYEMPPYSTGETGRVGSPKRREIGHGAL----AEKALVPVLPSREEFPYAIRQVSE 461
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
I ++G T ++ + ++L ++ + V + G + D+
Sbjct: 462 AIGSNGSTSMGSVCASTLSLLAAGVPLKAPVAGIAMGLV-----SGDVDGQHIFKTLTDI 516
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED+ D+D T I +Q + D + L AK+ ++++ +
Sbjct: 517 LGAEDAFGDMDFKVAGTSEF-ITALQLDTKLDGIPADILASALQQAKEARTTILEVINEC 575
Query: 238 I 238
I
Sbjct: 576 I 576
>gi|296120652|ref|YP_003628430.1| polyribonucleotide nucleotidyltransferase [Planctomyces limnophilus
DSM 3776]
gi|296012992|gb|ADG66231.1| Polyribonucleotide nucleotidyltransferase [Planctomyces limnophilus
DSM 3776]
Length = 703
Score = 138 bits (346), Expect = 1e-30, Method: Composition-based stats.
Identities = 49/244 (20%), Positives = 87/244 (35%), Gaps = 18/244 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
+RL GR+ + +R +S V GS L G+T L T TL + + + +
Sbjct: 314 VRLDGRKHDDLRAVSCAASVLPRVHGSSLFTRGETQSLATVTLGTIRDVQRVEGLFGEEA 373
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
+Y P S G R+ G R++ SV+ I +
Sbjct: 374 KAFMLDYYFPPYSVGECKPLRGPGRRELGHGAL----AERSVASVLPSPEKFPYTIRVIS 429
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
D+++++G + A++ A +AL D + + V + ++
Sbjct: 430 DILESNGSSSMASVCSATLALMDAGVPISQPVAGISIGLVKSADRFILLTDIM------- 482
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
ED D+D T G + +Q + S++ A L AK +L+K
Sbjct: 483 --GDEDHFGDMDFKVAGTQKG-VTGIQLDLKIDGISEEIVRATLEQAKKARIELLKTMLS 539
Query: 237 VISN 240
I
Sbjct: 540 AIRR 543
Score = 102 bits (253), Expect = 5e-20, Method: Composition-based stats.
Identities = 40/233 (17%), Positives = 85/233 (36%), Gaps = 26/233 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVP---MWIRNTKHGWITAEYGMLP 67
R +S+T ++K A G+ +++G+T + A P + + A G P
Sbjct: 12 RTLSITTGELAKQAAGAVTIQYGETMVFVAAQNGPSRPGTDFFPLTCDYRERLAAAGKFP 71
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R GR R R+ R +R + + Q++ +
Sbjct: 72 GGFIKR------EGRPTLREVLTSRLTDRPIRPLFPEGYIEEVQVMSNVLASDGVNDPDV 125
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
+I GA AL +G +AA+ G++ G I+ + + ++
Sbjct: 126 LSIIGASAALCLAPV-------------PFQGPLAAVRVGLIDGEFILFPTQEQIADSEL 172
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
D T+ ++ ++G ++ +D + I +L +LQ ++++
Sbjct: 173 DLVVAGTEK-SVLMIEGFGKQ--LPEDQMADAIMFGHRTIVELCQLQLELVAK 222
>gi|15673837|ref|NP_268012.1| polynucleotide phosphorylase/polyadenylase [Lactococcus lactis
subsp. lactis Il1403]
gi|81537531|sp|Q9CEI6|PNP_LACLA RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|12724886|gb|AAK05953.1|AE006415_8 polyribonucleotide nucleotidyltransferase [Lactococcus lactis
subsp. lactis Il1403]
Length = 773
Score = 138 bits (346), Expect = 1e-30, Method: Composition-based stats.
Identities = 43/246 (17%), Positives = 85/246 (34%), Gaps = 20/246 (8%)
Query: 1 MRLSGRQENQMREISLTRRVSKY--AEGSCLVKFGDTHLLTTATL----EEKVPMWIRNT 54
+R GR+ +++R + + G+ L G T L+T TL E ++ + +
Sbjct: 316 IRPDGRKIDEIRPLDAEIDFTPRNITHGTGLFTRGQTQALSTLTLAPMNEAQIIDGLNDE 375
Query: 55 KHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIII 114
Y S G + A R+ G RAL V+ I +
Sbjct: 376 YKKRFMHHYNFPQYSVGETGRYGAPGRREIGHGALG----ERALEQVLPSLEEFPYAIRL 431
Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPI 174
+V++++G + A+I +AL ++ + + +
Sbjct: 432 VAEVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISD---------GTNYTVL 482
Query: 175 VDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
D+ ED D+D T G I +Q + + + + L AK ++ +
Sbjct: 483 TDIQGLEDHFGDMDFKVAGTRDG-ITALQMDIKISGITPEILAEALAQAKTARFQILDVI 541
Query: 235 KDVISN 240
+ I+
Sbjct: 542 EATIAQ 547
Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats.
Identities = 40/232 (17%), Positives = 83/232 (35%), Gaps = 25/232 (10%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKV--PMWIRNTKHGWITAEYGMLPR 68
R +++ V+K A G+ +V++GDT +LT AT+ + + + G P
Sbjct: 13 RTLTVETGQVAKQANGAVVVRYGDTTVLTAATMGKMATGDFFPLQVNYEEKMYAAGKFPG 72
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
R R + R+I R +R + Q+I + R A
Sbjct: 73 GFNKR------EARPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDENASGRVA 126
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+ G+ +A +A + + G I++ E ++
Sbjct: 127 AMFGSSLA-------------LAISDIPFDRPIAGVEVAYIDGEYIINPTVAEKEASSLE 173
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
+ + I V+ A+ S++ L + + +LI+ Q ++++
Sbjct: 174 LSVAGNIN-AINMVESGAKE--LSEEVMLGALLAGHNAVKELIEFQNEIVAK 222
>gi|91069865|gb|ABE10796.1| polyribonucleotide nucleotidyltransferase [uncultured
Prochlorococcus marinus clone ASNC1363]
Length = 721
Score = 138 bits (346), Expect = 1e-30, Method: Composition-based stats.
Identities = 42/242 (17%), Positives = 89/242 (36%), Gaps = 19/242 (7%)
Query: 2 RLSGRQENQMREISLTRRVSK-YAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
R+ GR +++R+I+ + + GS L + G T +L+T TL + + + +
Sbjct: 323 RVDGRDLDEVRKITASASILPKRVHGSALFQRGLTQVLSTTTLGTPSDAQEMDDLNPSTE 382
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P S G R+ G RA+ V+ + +
Sbjct: 383 KTYLHHYNFPPYSVGETRPMRTPGRREIGHGAL----AERAIIPVLPGKETFPYVLRVVS 438
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V+ ++G T ++ G+ ++L D ++ + + + +G + D
Sbjct: 439 EVLSSNGSTSMGSVCGSTLSLLDAGVPLKAPVSGTAMGLIKEGKEV---------RILTD 489
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D TD G I +Q + + A+ +++ ++
Sbjct: 490 IQGIEDFLGDMDFKVAGTDKG-ITALQMDMKITGLPVSIISDAIKKARPARLHILEKMQE 548
Query: 237 VI 238
I
Sbjct: 549 AI 550
Score = 102 bits (253), Expect = 5e-20, Method: Composition-based stats.
Identities = 55/235 (23%), Positives = 91/235 (38%), Gaps = 26/235 (11%)
Query: 10 QMREISLTRR-VSKYAEGSCLVKFGDTHLLTTATLE---EKVPMWIRNTKHGWITAEYGM 65
REI LT + A GS +++ GDT LL TAT E + G
Sbjct: 11 DGREIRLTTGLYAPQASGSVMIECGDTSLLVTATKTLKKETSDFLPLICDYEEKLYAAGR 70
Query: 66 LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125
+P R GR R+ I R+I R +R + + QI+ C +
Sbjct: 71 IPGGFMRR------EGRPPERATLIARLIDRPMRPLFPVWMRDEIQIVASCLSLDERVPA 124
Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185
A+TGA +A G +AA+ G++ I++ Y E
Sbjct: 125 DVLAVTGASIAT-------------LLGEIPFYGPMAAVRVGLIGDDFILNPSYREIEKG 171
Query: 186 DVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
D+D + G IV ++ A + S+ ++ + + +LIK Q+D++ +
Sbjct: 172 DLDIVVAGSPDG-IVMIEAGANQ--LSEQDTIEAIDFGYEAVTELIKSQEDLLKD 223
>gi|297571213|ref|YP_003696987.1| guanosine pentaphosphate synthetase I/polyribonucleotide
nucleotidyltransferase [Arcanobacterium haemolyticum DSM
20595]
gi|296931560|gb|ADH92368.1| guanosine pentaphosphate synthetase I/polyribonucleotide
nucleotidyltransferase [Arcanobacterium haemolyticum DSM
20595]
Length = 809
Score = 137 bits (345), Expect = 1e-30, Method: Composition-based stats.
Identities = 42/243 (17%), Positives = 84/243 (34%), Gaps = 14/243 (5%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR ++R I+ + GS L + G+T ++ TL E+ +
Sbjct: 355 RMDGRTPVEIRTITAESDILPRVHGSALFQRGETQIMGVTTLNMLKMEQQLDNLSPVTAK 414
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P STG + + R+ G RAL V+ I +
Sbjct: 415 RYIHHYNFPPYSTGETGRVGSPKRREIGHGML----AERALVPVLPSREEFPYAIRQVSE 470
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ ++G T ++ + ++L + ++ + V + G + D+
Sbjct: 471 ALGSNGSTSMGSVCASTISLMNAGVPLKAVVAGIAMGLV-----SGEIDGEQRYVALTDI 525
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED+ D+D T + +Q + + A L A D ++ L ++
Sbjct: 526 LGAEDALGDMDFKVAGTRDF-VTALQLDTKLDGIPAEVLAAALGQAHDARQAILDLIEEA 584
Query: 238 ISN 240
+
Sbjct: 585 VPE 587
Score = 69.9 bits (169), Expect = 3e-10, Method: Composition-based stats.
Identities = 41/227 (18%), Positives = 68/227 (29%), Gaps = 14/227 (6%)
Query: 12 REISLTRR-VSKYAEGSCLVKF-GDTHLLTTATLEEKVPMWIRNT----KHGWITAEYGM 65
R I +++ A G L G+T +L+ + + + G
Sbjct: 37 RTIRFETGLLARQAAGCALAYLDGETTVLSATAVSSQPKEHFDFFPLTVDVEERSYAAGR 96
Query: 66 LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125
+P S R GR G + R+I R LR Q++ I D
Sbjct: 97 IPGSFFRR------EGRPGTDAILAARLIDRPLRPAFVKGLRNEVQVVATVLTIHPDDAY 150
Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185
AI A ++ ++S + VA + + G
Sbjct: 151 DVVAINAASMSTQLSGLPFSGPIGGVRISLIDGQWVAFPRWSEMPRATFTMVVAGRIVGD 210
Query: 186 DVDANFVMTDSGHIVEVQGSAERAT-FSQDHFFAMLNLAKDRIADLI 231
DV V + G V+ A+ +++ L AK I L
Sbjct: 211 DVAIMMVEAEGGE-NAVENIAKGGVKPTEEVVAQGLEAAKTFIRTLC 256
>gi|300933063|ref|ZP_07148319.1| polynucleotide phosphorylase/polyadenylase [Corynebacterium
resistens DSM 45100]
Length = 787
Score = 137 bits (345), Expect = 1e-30, Method: Composition-based stats.
Identities = 43/242 (17%), Positives = 88/242 (36%), Gaps = 14/242 (5%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKH 56
R+ GR +R++ + ++ A GS L + G+T +L TL+ E+ +
Sbjct: 402 FRIDGRDATTIRDLGIVVQLVPRAHGSALFERGETQILGVTTLDTLKMEQQIDSLGTETS 461
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P STG + + R+ G RAL V+ I
Sbjct: 462 KRYIHHYNFPPFSTGETGRVGSPKRREIGHGAL----AERALVPVIPSRDEFPYTIRQVS 517
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+ + ++G T ++ + ++L++ ++ + V + D
Sbjct: 518 EAMGSNGSTSMGSVCASTLSLYNAGVPLKAPVAGIAMGLVT-----GKVGNKDKYVTLTD 572
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED+ D+D T+ + +Q + D L A+ ++++L +D
Sbjct: 573 ILGAEDAFGDMDFKVAGTEDF-VTALQLDTKLDGIPSDVLAEALGQARTARLEILQLMED 631
Query: 237 VI 238
I
Sbjct: 632 AI 633
Score = 68.7 bits (166), Expect = 7e-10, Method: Composition-based stats.
Identities = 36/257 (14%), Positives = 69/257 (26%), Gaps = 33/257 (12%)
Query: 12 REISLTRRV-SKYAEGSCLVKFGD-THLLTTATLE----EKVPMWIRNTKHGWITAEYGM 65
R + + ++ A+G+ + T LL+T T E + + G
Sbjct: 65 RTVRFESGLLARQADGAVTAYLDEDTMLLSTTTASRNPREGIDFFPLTVDVEERMYAAGR 124
Query: 66 LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125
+P S R GR G + R+I R LR Q+I+ +
Sbjct: 125 IPGSFFRR------EGRPGTEAILAARLIDRPLRPTFVKGLRNEVQVIVTVLSMDPQEMY 178
Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY------ 179
AI A + + +++ V+ +
Sbjct: 179 DVLAINAASASTQLSGLPVSSAVGGVRMALVVDEDHPEGQWVAFPTREQLSASVFELVVA 238
Query: 180 ----GEDSTIDVDANFVMTDSGHIVEVQGSAERATF----------SQDHFFAMLNLAKD 225
+ ++ V+ A ++ + AK
Sbjct: 239 GRVTEPVKGARGRRTKGGDTNVAVMMVEAGATADAVERIAQGAPAPTEAVVAEGIEAAKP 298
Query: 226 RIADLIKLQKDVISNEV 242
IA L + Q +S +
Sbjct: 299 FIATLCEAQD-ALSRAI 314
>gi|284929051|ref|YP_003421573.1| polyribonucleotide nucleotidyltransferase [cyanobacterium UCYN-A]
gi|284809510|gb|ADB95215.1| polyribonucleotide nucleotidyltransferase [cyanobacterium UCYN-A]
Length = 715
Score = 137 bits (345), Expect = 1e-30, Method: Composition-based stats.
Identities = 45/244 (18%), Positives = 85/244 (34%), Gaps = 20/244 (8%)
Query: 1 MRLSGRQENQMREISLTRRVS-KYAEGSCLVKFGDTHLLTTATLE-----EKVPMWIRNT 54
+R+ GR+ +++R I+ + G L G T +L+ ATL + + +
Sbjct: 323 IRVDGRKLDEVRPITCDVGILPPRVHGCGLFNRGLTQVLSLATLGTPGDAQDLGDDLHPE 382
Query: 55 KHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIII 114
Y P S + R+ G RAL V+ + +
Sbjct: 383 DEKRYLHHYNFPPYSVAETKPMRSPGRREIGHGAL----AERALLPVLPQQEEFPYVVRV 438
Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPI 174
+V+ ++G T ++ G+ +AL D + + + + +G +
Sbjct: 439 VSEVLSSNGSTSMGSVCGSTLALMDAGVPIAKPVSGAAMGLIKEGEEV---------RIL 489
Query: 175 VDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
D+ ED D+D TDSG I +Q + S D + A +++
Sbjct: 490 TDIQGIEDFLGDMDFKVAGTDSG-ITALQMDMKITGLSMDVIAKAIEQALPARLHILEKM 548
Query: 235 KDVI 238
I
Sbjct: 549 LSTI 552
Score = 102 bits (255), Expect = 3e-20, Method: Composition-based stats.
Identities = 49/235 (20%), Positives = 87/235 (37%), Gaps = 26/235 (11%)
Query: 10 QMREISLTRRV-SKYAEGSCLVKFGDTHLLTTAT---LEEKVPMWIRNTKHGWITAEYGM 65
R+I L + + A G+ L++ GDT +L TAT E + + G
Sbjct: 11 DGRDIRLKLGLLAPQAGGAILIQSGDTAVLVTATTSKGREGIDFLPLTVDYEERLYAAGR 70
Query: 66 LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125
+P R GR R I R+I R LR + QII + +
Sbjct: 71 IPGGFLRR------EGRPPERVTLISRLIDRPLRPLFPNWFRNDIQIIATTLSMDEEVPP 124
Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185
A+TGA +A+ +AA+ G++ I++ Y E
Sbjct: 125 DVLAVTGASIAVIQAQIPFFG-------------PMAAVRVGLVGDDFIINPTYREVEDG 171
Query: 186 DVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
D+D + G +V ++ A + + ++ + + DLI Q++++
Sbjct: 172 DLDLVVAGSPDG-VVMIEAGANQ--LPEQDVIEAIDFGYEAVRDLIGAQQEIMEE 223
>gi|326407346|gb|ADZ64417.1| polyribonucleotide nucleotidyltransferase [Lactococcus lactis
subsp. lactis CV56]
Length = 773
Score = 137 bits (345), Expect = 1e-30, Method: Composition-based stats.
Identities = 43/246 (17%), Positives = 85/246 (34%), Gaps = 20/246 (8%)
Query: 1 MRLSGRQENQMREISLTRRVSKY--AEGSCLVKFGDTHLLTTATL----EEKVPMWIRNT 54
+R GR+ +++R + + G+ L G T L+T TL E ++ + +
Sbjct: 316 IRPDGRKIDEIRPLDAEIDFTPRNITHGTGLFTRGQTQALSTLTLAPMNEAQIIDGLNDE 375
Query: 55 KHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIII 114
Y S G + A R+ G RAL V+ I +
Sbjct: 376 YKKRFMHHYNFPQYSVGETGRYGAPGRREIGHGALG----ERALEQVLPSLEEFPYAIRL 431
Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPI 174
+V++++G + A+I +AL ++ + + +
Sbjct: 432 VAEVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISD---------GTNYTVL 482
Query: 175 VDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
D+ ED D+D T G I +Q + + + + L AK ++ +
Sbjct: 483 TDIQGLEDHFGDMDFKVAGTRDG-ITALQMDIKISGITPEILAEALAQAKTARFQILDVI 541
Query: 235 KDVISN 240
+ I+
Sbjct: 542 EATIAQ 547
Score = 108 bits (270), Expect = 6e-22, Method: Composition-based stats.
Identities = 40/232 (17%), Positives = 83/232 (35%), Gaps = 25/232 (10%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKV--PMWIRNTKHGWITAEYGMLPR 68
R +++ V+K A G+ +V++GDT +LT AT+ + + + G P
Sbjct: 13 RTLTVETGQVAKQANGAVVVRYGDTTVLTAATMGKMATGEFFPLQVNYEEKMYAAGKFPG 72
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
R R + R+I R +R + Q+I + R A
Sbjct: 73 GFNKR------EARPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDENASGRVA 126
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+ G+ +A +A + + G I++ E ++
Sbjct: 127 AMFGSSLA-------------LAISDIPFDRPIAGVEVAYIDGEYIINPTVAEKEASSLE 173
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
+ + I V+ A+ S++ L + + +LI+ Q ++++
Sbjct: 174 LSVAGNIN-AINMVESGAKE--LSEEVMLGALLAGHNAVKELIEFQNEIVAK 222
>gi|296139452|ref|YP_003646695.1| polyribonucleotide nucleotidyltransferase [Tsukamurella
paurometabola DSM 20162]
gi|296027586|gb|ADG78356.1| polyribonucleotide nucleotidyltransferase [Tsukamurella
paurometabola DSM 20162]
Length = 750
Score = 137 bits (345), Expect = 1e-30, Method: Composition-based stats.
Identities = 45/242 (18%), Positives = 83/242 (34%), Gaps = 14/242 (5%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKH 56
R+ GR +R +S V A GS L + G+T +L TL+ + + K
Sbjct: 350 FRIDGRGITDIRSLSAEIAVIPRAHGSALFERGETQILGVTTLDMVKMAQQIDSLGPEKS 409
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P STG + + R+ G RAL V+ I
Sbjct: 410 KRYMHHYNFPPYSTGETGRVGSPKRREIGHGAL----AERALVPVLPSVEEFPYAIRQVS 465
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+ + ++G T ++ + ++L + ++ + V G + D
Sbjct: 466 EALSSNGSTSMGSVCASTMSLLNAGVPLKAPVAGIAMGLVSDE-----VDGQARYVALTD 520
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED+ D+D T + +Q + L AKD ++++ +
Sbjct: 521 ILGAEDAFGDMDFKVAGTSDF-VTALQLDTKLDGIPSQVLAGALGQAKDARTTILEVMAE 579
Query: 237 VI 238
I
Sbjct: 580 AI 581
>gi|323343826|ref|ZP_08084053.1| polyribonucleotide nucleotidyltransferase [Prevotella oralis ATCC
33269]
gi|323095645|gb|EFZ38219.1| polyribonucleotide nucleotidyltransferase [Prevotella oralis ATCC
33269]
Length = 791
Score = 137 bits (345), Expect = 1e-30, Method: Composition-based stats.
Identities = 47/243 (19%), Positives = 85/243 (34%), Gaps = 18/243 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
RL GR+ +++R I GS + + G+T L+T TL +EK+ + +
Sbjct: 325 RLDGRKTDEIRPIWCEVSALPMPHGSAIFQRGETMSLSTCTLGTKMDEKLVDDVLEKGYQ 384
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P STG + V R+ G R L+ + + +
Sbjct: 385 RFLLHYNFPPFSTGEAKAQRGVGRREIGHGHL----AWRGLKGQIPAD--FPYTVRLVSQ 438
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+++++G + A + +AL D M + + + G + D+
Sbjct: 439 ILESNGSSSMATVCAGTLALMDAGVPMAKPVSGIAMGLIKN-------PGEEKYAVLSDI 491
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T G + Q + S + L AK ++ +
Sbjct: 492 LGDEDHLGDMDFKTTGTKDG-LTATQMDIKCDGLSFEILEKALMQAKAGREYILGKMMET 550
Query: 238 ISN 240
IS
Sbjct: 551 ISE 553
Score = 101 bits (250), Expect = 1e-19, Method: Composition-based stats.
Identities = 40/235 (17%), Positives = 72/235 (30%), Gaps = 25/235 (10%)
Query: 3 LSGRQENQMREISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
GR IS+ V+K A+G+ +++ G+T LL T +
Sbjct: 11 PDGRT------ISIETGKVAKQADGAAVLRMGNTVLLATVCAAKDAVPGTDFMPLQVDYR 64
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
E G+ R++ RALR + + + +
Sbjct: 65 EQYSAAGRFP--GGFTKREGKASDSEILTSRLVDRALRPLFPSNYHAEVYVQVMLLSADG 122
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
A A A+ G ++ + + G +VD + +
Sbjct: 123 VDQPDALAGFAASAAMAC-------------SDIPFDGPISEVRIARINGEYVVDPTFQQ 169
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
D+D T +I+ V+ E S+ L +A D I + LQ +
Sbjct: 170 MKEADMDIMVGATKD-NIMMVE--GEMNEVSEQDLIDALKVAADAIKPMCDLQTE 221
>gi|149173903|ref|ZP_01852532.1| ribonuclease PH [Planctomyces maris DSM 8797]
gi|148847433|gb|EDL61767.1| ribonuclease PH [Planctomyces maris DSM 8797]
Length = 246
Score = 137 bits (345), Expect = 1e-30, Method: Composition-based stats.
Identities = 109/242 (45%), Positives = 142/242 (58%), Gaps = 12/242 (4%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWI--RNTKHGW 58
MR RQ Q+R I + R +K GS L+ GDT +L TA+L+ VP W GW
Sbjct: 1 MRHDSRQPEQLRPIKVERGYTKATPGSILISAGDTVVLCTASLDNSVPPWKKNDENPSGW 60
Query: 59 ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDV 118
+TAEY MLP ST R R GRS EIQR+IGR+LR+V+D ALG R I +DCDV
Sbjct: 61 VTAEYNMLPGSTSPRK-----QRRADGRSSEIQRLIGRSLRAVIDFGALGPRTITVDCDV 115
Query: 119 IQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQ-----VLKGHVAAISCGMLCGYP 173
+QADGGTRT +ITG ++AL D + + + + VAA+S G++ G P
Sbjct: 116 LQADGGTRTLSITGGFLALLDTVLAIPETCELAPGEVFDPKRIFSDSVAAVSVGVVNGEP 175
Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
++DLDY EDST VD N VMT G +EVQG+AE TF++ A L LA I L ++
Sbjct: 176 VLDLDYVEDSTAGVDMNVVMTGGGDFIEVQGTAEGQTFNRGMLDAQLELATAGIQQLSEI 235
Query: 234 QK 235
Q+
Sbjct: 236 QR 237
>gi|311744161|ref|ZP_07717966.1| polyribonucleotide nucleotidyltransferase [Aeromicrobium marinum
DSM 15272]
gi|311312516|gb|EFQ82428.1| polyribonucleotide nucleotidyltransferase [Aeromicrobium marinum
DSM 15272]
Length = 753
Score = 137 bits (345), Expect = 1e-30, Method: Composition-based stats.
Identities = 47/244 (19%), Positives = 82/244 (33%), Gaps = 14/244 (5%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKH 56
+R+ GR +RE+S V GS L + G+T +L TL E+ +
Sbjct: 354 VRIDGRGLADIRELSAEVSVIPRVHGSALFQRGETQILGVTTLNMLDLEQKLDTLSPETK 413
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P STG + + R+ G GRAL V+ I
Sbjct: 414 RRYMHNYNFPPFSTGETGRVGSPKRREIGHGAL----AGRALLPVLPTREEFPYAIRQVS 469
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+ + ++G T ++ + + L + + + + + G + D
Sbjct: 470 EALSSNGSTSMGSVCASTLGLLNAGVPLRAPVAGIAMGLI-----SGEVDGRTEYVTLTD 524
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED+ D+D T I +Q + D LN AK ++ +
Sbjct: 525 ILGAEDAFGDMDFKVAGTPEF-ITALQLDTKLDGIPADVLAGALNQAKGARLTILDVMAQ 583
Query: 237 VISN 240
I
Sbjct: 584 AIDE 587
Score = 77.6 bits (189), Expect = 1e-12, Method: Composition-based stats.
Identities = 41/249 (16%), Positives = 71/249 (28%), Gaps = 43/249 (17%)
Query: 12 REISLTRRV-SKYAEGSCLVKFGD-THLLTTATLEEKVPMWIRNT----KHGWITAEYGM 65
R + V ++ A GS D T LL+ T ++ G
Sbjct: 32 RTVRFETGVLAQQAAGSVSAYLDDDTMLLSATTAGRHPKEFLDFFPLTIDVEERMYAAGR 91
Query: 66 LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125
+P S R GR + R+I R LR Q++I+ + D
Sbjct: 92 IPGSFFRR------EGRPSEDAILTCRLIDRPLRPTFKKGLRNEVQVVINVMALNPDTPY 145
Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185
AI A + G V A ++ G + + +
Sbjct: 146 DVLAINAASASTQ-------------ISGLPFTGPVGATRVALIDGQWVAFPSHSQLEEA 192
Query: 186 DVDANF--------VMTDSGHIVEVQGSAERATF----------SQDHFFAMLNLAKDRI 227
D + I+ V+ + AT+ +++ L AK I
Sbjct: 193 VFDMVVAGRIAAQADGSSDVAIMMVEAESTEATWDLVQSGVQAPTEEVVAGGLEAAKVAI 252
Query: 228 ADLIKLQKD 236
+ + Q +
Sbjct: 253 RQMCEAQSE 261
>gi|254821343|ref|ZP_05226344.1| polynucleotide phosphorylase/polyadenylase [Mycobacterium
intracellulare ATCC 13950]
Length = 744
Score = 137 bits (345), Expect = 1e-30, Method: Composition-based stats.
Identities = 43/242 (17%), Positives = 80/242 (33%), Gaps = 10/242 (4%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKH 56
R+ GR +R +S V A GS L + G+T +L TL+ + +
Sbjct: 338 FRIDGRGITDIRALSAEVAVVPRAHGSALFQRGETQILGVTTLDMVKMAQQIDSLGPETS 397
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P STG + + R+ G RAL V+ I
Sbjct: 398 KRYMHHYNFPPFSTGETGRVGSPKRREIGHGAL----AERALIPVLPGVEDFPYAIRQVS 453
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+ + ++G T ++ + ++L + ++ + V D
Sbjct: 454 EALGSNGSTSMGSVCASTLSLLNAGVPLKAPVAGIAMGLVSDDVEIDGRTERRFVTL-TD 512
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED+ D+D T + +Q + L AKD ++++ +
Sbjct: 513 ILGAEDAFGDMDFKCAGTKDF-VTALQLDTKLDGIPSQVLAGALGQAKDARLTILEVMAE 571
Query: 237 VI 238
I
Sbjct: 572 AI 573
>gi|284030886|ref|YP_003380817.1| guanosine pentaphosphate synthetase I/polyribonucleotide
nucleotidyltransferase [Kribbella flavida DSM 17836]
gi|283810179|gb|ADB32018.1| guanosine pentaphosphate synthetase I/polyribonucleotide
nucleotidyltransferase [Kribbella flavida DSM 17836]
Length = 750
Score = 137 bits (345), Expect = 1e-30, Method: Composition-based stats.
Identities = 40/242 (16%), Positives = 80/242 (33%), Gaps = 14/242 (5%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
+R+ GR +R + +V GS L + G+T +L TL E+ +
Sbjct: 345 VRMDGRGLADIRPLKAQVKVLPRVHGSALFERGETQILGVTTLNMLRMEQQLDTLSPETR 404
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P STG + + R+ G RAL V+ +
Sbjct: 405 KRYMHNYNFPPYSTGETGRVGSPKRREIGHGAL----AERALVPVLPSREDFPYALRQVS 460
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+ + ++G T ++ + ++L ++ + + + G + D
Sbjct: 461 EALGSNGSTSMGSVCASTLSLLSAGVPLKAPVAGIAMGLI-----SGEVDGKTEYVALTD 515
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED+ D+D T + +Q + L AK+ ++ +
Sbjct: 516 ILGAEDAFGDMDFKVAGTKDF-VTALQLDTKLDGIPASVLAGALTQAKEARLTILDVMAK 574
Query: 237 VI 238
I
Sbjct: 575 AI 576
Score = 67.2 bits (162), Expect = 2e-09, Method: Composition-based stats.
Identities = 39/250 (15%), Positives = 68/250 (27%), Gaps = 40/250 (16%)
Query: 12 REISLTRRVSKYAEGSCLVKF--GDTHLLTTATLEEKVPMWIRNT----KHGWITAEYGM 65
R I + GDT +L+ T +K G
Sbjct: 27 RTIRFETGRLAQQAAGSAAAYLDGDTMVLSATTASKKPKDQFDFFPLTVDVEERMYAAGR 86
Query: 66 LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125
+P S R GR + R+I R LR Q++I + D
Sbjct: 87 IPGSFFRR------EGRPSEEAILTCRLIDRPLRPSFVSGLRNEIQVVITVLALNPDKLY 140
Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185
AI A ++ G + A ++ + + E
Sbjct: 141 DVLAINAASMSTQIAG-------------LPFSGPIGATRVALIDKQWVAFPTHSELEDA 187
Query: 186 DVDANFVM----TDSGHIVEVQGSAERATF----------SQDHFFAMLNLAKDRIADLI 231
D + I+ V+ + TF +++ L AK I L+
Sbjct: 188 VFDMVVAGRVTDSGDVAIMMVEAESTPGTFDAVAAGKQAPTEEIVAEGLEAAKGFIKTLV 247
Query: 232 KLQKDVISNE 241
+ Q ++ +
Sbjct: 248 EAQ-SALAAK 256
>gi|159903819|ref|YP_001551163.1| polynucleotide phosphorylase/polyadenylase [Prochlorococcus marinus
str. MIT 9211]
gi|226702676|sp|A9BBJ7|PNP_PROM4 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|159888995|gb|ABX09209.1| polyribonucleotide nucleotidyltransferase [Prochlorococcus marinus
str. MIT 9211]
Length = 722
Score = 137 bits (345), Expect = 1e-30, Method: Composition-based stats.
Identities = 46/242 (19%), Positives = 88/242 (36%), Gaps = 19/242 (7%)
Query: 2 RLSGRQENQMREISLTRRVSK-YAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
R+ GR +++R+I + GS L + G T +L+TATL + + + +
Sbjct: 323 RVDGRALDEVRKIEAAAGILPKRVHGSGLFQRGLTQVLSTATLGTPSDAQEMDDLNPSSD 382
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P S G R+ G RAL V+ + +
Sbjct: 383 KTYIHHYNFPPYSVGETRPMRTPGRREVGHGAL----AERALIPVLPPKESFPYVLRVVS 438
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V+ ++G T ++ G+ +AL D ++ + + + +G + D
Sbjct: 439 EVLSSNGSTSMGSVCGSTIALLDAGVPLKAPVSGAAMGLIKEGKEI---------RILTD 489
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T+ G I +Q + +N AK +++ +
Sbjct: 490 IQGIEDFLGDMDFKVAGTEKG-ITALQMDMKVTGLEVKTIADAINQAKPARTHILEKMNE 548
Query: 237 VI 238
I
Sbjct: 549 TI 550
Score = 113 bits (281), Expect = 3e-23, Method: Composition-based stats.
Identities = 51/235 (21%), Positives = 88/235 (37%), Gaps = 26/235 (11%)
Query: 10 QMREISLTRR-VSKYAEGSCLVKFGDTHLLTTAT---LEEKVPMWIRNTKHGWITAEYGM 65
REI LT + A GS L++ GDT +L TAT E + G
Sbjct: 11 DGREIRLTTGRYAPQAGGSVLIECGDTAVLVTATQSPGREGADFLPLICDYEERLYAAGR 70
Query: 66 LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125
+P S R GR R+ I R+I R LR + Q++ C + +
Sbjct: 71 IPGSFMRR------EGRPPERATLISRLIDRPLRPLFPSWMRDDIQVVATCLSLDERVPS 124
Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185
A+T + +A +AA+ G+L +++ + E
Sbjct: 125 DVLAVTASSMATLLAEIPFYG-------------PMAAVRVGLLGDDFVLNPSFREIERG 171
Query: 186 DVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
D+D T G +V ++ A + S+ ++ + + +LIK Q+ ++
Sbjct: 172 DLDLVVAGTPDG-VVMIEAGANQ--LSEQDVIEAVDFGYEAVTELIKAQQSILKE 223
>gi|327404361|ref|YP_004345199.1| polyribonucleotide nucleotidyltransferase [Fluviicola taffensis DSM
16823]
gi|327319869|gb|AEA44361.1| Polyribonucleotide nucleotidyltransferase [Fluviicola taffensis DSM
16823]
Length = 719
Score = 137 bits (345), Expect = 1e-30, Method: Composition-based stats.
Identities = 48/242 (19%), Positives = 86/242 (35%), Gaps = 20/242 (8%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
RL GR+ +++R I GS + G+T LTT TL +E++ +
Sbjct: 319 RLDGRKFDEIRPIWAEVDYLPMVHGSAVFTRGETQSLTTLTLGGKMDEQLIDGVTFHGTE 378
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P STG S R+ G RAL+ V+ + I + D
Sbjct: 379 KFLLHYNFPPFSTGEAKPLRGTSRREIGHGNL----ALRALKPVLPAD--NAYTIRLVSD 432
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+++++G + A + +AL D ++ + + V A+ +
Sbjct: 433 ILESNGSSSMATVCAGTLALMDGGVQIKAPVSGIAMGLVADEGKFAVLSD---------I 483
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T G I Q + + L+ A+ ++ +
Sbjct: 484 LGDEDHLGDMDFKVTGTSKG-ITACQMDIKVDGLPYEVLIQALDQARAGRIHILNKIIET 542
Query: 238 IS 239
I+
Sbjct: 543 IA 544
Score = 106 bits (264), Expect = 3e-21, Method: Composition-based stats.
Identities = 37/223 (16%), Positives = 68/223 (30%), Gaps = 19/223 (8%)
Query: 13 EISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG 71
EIS+ ++K A+GS +++ G+T LL T + + E
Sbjct: 15 EISIETGKLAKQADGSVVLQMGNTVLLATVVAAPEAKDGVDFLPLTVDYREKYAAAGRFP 74
Query: 72 NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAIT 131
R + R++ RALR + Q++I
Sbjct: 75 --GGFFRREARPSETEILVMRLVDRALRPLFPDDYHAEVQLMIQLLSYDGVNNPDALCGL 132
Query: 132 GAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANF 191
A A G ++ + G + G IV+ E + D+D
Sbjct: 133 AASAA-------------IAVSDIPFNGPMSEVRVGRINGEWIVNPSMEEMKSADIDMMV 179
Query: 192 VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
T + ++ E S+ + +A I + + Q
Sbjct: 180 AGTMKD-VNMIE--GEFQEISELEMVEAIKIAHAAIKEQCQFQ 219
>gi|258591357|emb|CBE67656.1| Polyribonucleotide nucleotidyltransferase (Polynucleotide
phosphorylase) (PNPase) [NC10 bacterium 'Dutch
sediment']
Length = 695
Score = 137 bits (345), Expect = 1e-30, Method: Composition-based stats.
Identities = 48/243 (19%), Positives = 81/243 (33%), Gaps = 18/243 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R GR +R I+ V GS L G T L T TL +E+ +
Sbjct: 312 RADGRSLEDVRPITAEVGVLPRTHGSALFTRGQTQALVTTTLGTSEDEQRLDDLEGEGTK 371
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G R+ G + RAL + + S + I D
Sbjct: 372 RFMLHYNFPPFSVGEVRFMRGPGRREIG----HGALAERALLAALPPKEEFSYTLRIVSD 427
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+++++G + A + GA ++L D + + V++ AAI +
Sbjct: 428 ILESNGSSSMATVCGASLSLMDAGVPIRSAVAGVAMGLVVEDERAAILTD---------I 478
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T G I +Q + + L A+ ++
Sbjct: 479 IGLEDHLGDMDFKVAGTRKG-ITALQLDIKTQGIAPSLMPKALGQARRARLHILDQMDRA 537
Query: 238 ISN 240
++
Sbjct: 538 LTE 540
Score = 112 bits (279), Expect = 5e-23, Method: Composition-based stats.
Identities = 43/229 (18%), Positives = 78/229 (34%), Gaps = 27/229 (11%)
Query: 13 EISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT----KHGWITAEYGMLP 67
+S+ V++ A+G+ LV++GDT +L T +++ I + G +P
Sbjct: 13 PLSIEAGRVARQADGAVLVRYGDTVVLVTVVASKQMRQGIDFFPLTVDYQERAYAAGKIP 72
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R G+ + R+I R LR + QII
Sbjct: 73 GGFFKR------EGKPHDKETLTSRLIDRPLRPLFPDGYRNDVQIIATVLSADQQNDPDV 126
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
A+ GA AL + A+ G + G +++ Y + D+
Sbjct: 127 LAVLGASAALTIAPIPFLG-------------PIGAVRVGRVEGKLLLNPTYAQMEGSDI 173
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
D T S +V ++ A +D F + I +I + +
Sbjct: 174 DMVVAGTRS-AVVMLEAGANE--IPEDVMFEAIEFGHKGIQPMIDMVSE 219
>gi|326800482|ref|YP_004318301.1| polyribonucleotide nucleotidyltransferase [Sphingobacterium sp. 21]
gi|326551246|gb|ADZ79631.1| Polyribonucleotide nucleotidyltransferase [Sphingobacterium sp. 21]
Length = 732
Score = 137 bits (345), Expect = 1e-30, Method: Composition-based stats.
Identities = 46/243 (18%), Positives = 80/243 (32%), Gaps = 16/243 (6%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
+RL GR +R I A GS + G+T LT+ TL +E++ +
Sbjct: 333 IRLDGRDVRTVRPIWSEVDYLPAAHGSAIFTRGETQSLTSVTLGAKEDEQMIDGAFINGY 392
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y STG R+ G R+L+ V+ I +
Sbjct: 393 SRFILHYNFPGFSTGEVRPNRGPGRREVGHGNL----AMRSLKQVLPSQEENPYTIRVVS 448
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
D+++++G + A + +AL D + + + + + D
Sbjct: 449 DILESNGSSSMATVCAGTLALMDAGVKITAPVSGIAMGLITDEKTG-------KYAVLSD 501
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T G IV Q + + L AK+ ++
Sbjct: 502 ILGDEDHLGDMDFKVTGTSKG-IVACQMDLKINGLKWEVLKEALYQAKESRLHILNEMLK 560
Query: 237 VIS 239
I
Sbjct: 561 TIE 563
Score = 106 bits (264), Expect = 3e-21, Method: Composition-based stats.
Identities = 41/238 (17%), Positives = 84/238 (35%), Gaps = 28/238 (11%)
Query: 10 QMREISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRN----TKHGWITAEYG 64
R+I + ++K A+GS +VK G+T LL T ++ + A G
Sbjct: 29 DGRQIEIETGKLAKQADGSVVVKMGNTMLLATVVSAQEAKPGTDFLPLSVDYQEKYAATG 88
Query: 65 MLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGG 124
+P R R I R++ RALR + Q++I
Sbjct: 89 RIPGGFLRR------EARLSDYEILISRLVDRALRPLFPDDYHADTQVMITL-------- 134
Query: 125 TRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDST 184
I+ + D L + + G ++ + + G +++ +
Sbjct: 135 -----ISADKDIMPDALAGLAASAALAVSDIPFNGPISEVRVAKIDGKFVINPLLSDLER 189
Query: 185 IDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNEV 242
++ + + IV V+G A+ S++ + A + I ++ Q + ++ V
Sbjct: 190 ATLEFIVAGSAND-IVMVEGEAKE--ISEEEMVEAIAFAHEAIKVQVQAQLE-LAEMV 243
>gi|50954610|ref|YP_061898.1| polynucleotide phosphorylase/polyadenylase [Leifsonia xyli subsp.
xyli str. CTCB07]
gi|81391079|sp|Q6AFQ2|PNP_LEIXX RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|50951092|gb|AAT88793.1| polyribonucleotide nucleotidyltransferase [Leifsonia xyli subsp.
xyli str. CTCB07]
Length = 761
Score = 137 bits (345), Expect = 1e-30, Method: Composition-based stats.
Identities = 40/242 (16%), Positives = 81/242 (33%), Gaps = 14/242 (5%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
+R+ GR +R + ++ GS + + G+T +L TL E+ +
Sbjct: 356 VRIDGRGLTDIRPLDAEVQIIPRVHGSAVFQRGETQILGVTTLNMLKMEQQIDSLSPVTK 415
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P STG + + R+ G RAL V+ I
Sbjct: 416 KRYLHHYNFPPYSTGETGRVGSPKRREIGHGFL----AERALVPVLPSREEFPYAIRQVS 471
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+ + ++G T ++ + ++L + + + + + G + D
Sbjct: 472 EALSSNGSTSMGSVCASTLSLLNAGVPLRAPVAGIAMGLISD-----VIDGETRYAALTD 526
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED+ D+D T + +Q + + L AKD ++ +
Sbjct: 527 ILGAEDALGDMDFKVAGTSEF-VTAIQLDTKLDGIPSSVLASALKQAKDARTTILSVLDA 585
Query: 237 VI 238
I
Sbjct: 586 AI 587
>gi|311898696|dbj|BAJ31104.1| putative guanosine pentaphosphate synthetase/polyribonucleotide
nucleotidyltransferase [Kitasatospora setae KM-6054]
Length = 736
Score = 137 bits (345), Expect = 1e-30, Method: Composition-based stats.
Identities = 41/242 (16%), Positives = 81/242 (33%), Gaps = 14/242 (5%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
+R+ GR +R ++ GS L + G+T +L TL E+ +
Sbjct: 338 VRIDGRGVTDIRTLAAEVEAIPRVHGSALFERGETQILGVTTLNMLRMEQQLDTLSPETR 397
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P S G + + R+ G RA+ V+ I
Sbjct: 398 RRYMHNYNFPPYSVGETGRVGSPKRREIGHGAL----AERAILPVLPTREEFPYAIRQVS 453
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+ + ++G T ++ + ++L + ++ + + + G + D
Sbjct: 454 EALGSNGSTSMGSVCASTMSLLNAGVPLKAPVAGIAMGLISQEID-----GETHYVTLTD 508
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED+ D+D T I +Q + A L AKD ++ + +
Sbjct: 509 ILGAEDAYGDMDFKVAGTRDF-ITALQLDTKLDGIPASVLAAALKQAKDARLHILDVMNE 567
Query: 237 VI 238
I
Sbjct: 568 AI 569
Score = 75.7 bits (184), Expect = 5e-12, Method: Composition-based stats.
Identities = 41/230 (17%), Positives = 72/230 (31%), Gaps = 19/230 (8%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGD-THLLTTATLEEKVPMWIRNT----KHGWITAEYGM 65
R I +++ A GS + D T +L+ + ++ G
Sbjct: 20 RTIRFETGRLARQAAGSAVAYLDDDTMVLSATSASKQPKEHFDFFPLTVDVEERMYAAGR 79
Query: 66 LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125
+P S R GR + R+I R LR Q+++ + D
Sbjct: 80 IPGSFFRR------EGRPSEDAILTCRLIDRPLRPSFVKGLRNEIQVVVTVMALNPDHLY 133
Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185
AI A + +++ + VA + L + +
Sbjct: 134 DVVAINAASASTQLAGLPFSGPIGGVRVALINGQWVAFPTHSELESAVFDMVV-AGRALP 192
Query: 186 DVDANFVMTDS----GHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231
D D +M ++ I V+G AE +++ A L AK I L
Sbjct: 193 DGDVAIMMVEAEATTKTIQLVEGGAEAP--TEEVVAAGLEAAKPFIKVLC 240
>gi|268611199|ref|ZP_06144926.1| polynucleotide phosphorylase/polyadenylase [Ruminococcus
flavefaciens FD-1]
Length = 704
Score = 137 bits (345), Expect = 1e-30, Method: Composition-based stats.
Identities = 43/244 (17%), Positives = 81/244 (33%), Gaps = 17/244 (6%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +++R ++ + GS L G T +LT ATL + + + +
Sbjct: 314 RVDGRGIDEIRPLAAEVGLLPRVHGSGLFTRGQTQVLTIATLGPVSDAQRIDGLDEEESK 373
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
+Y S G R+ G RAL V+ + + +
Sbjct: 374 RYMHQYNFPSYSVGETKPSRGPGRREIGHGAL----AERALAPVIPSVDEFPYALRLVSE 429
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
V+ ++G T +I G+ +AL D ++ + K +VD+
Sbjct: 430 VLSSNGSTSQGSICGSTLALMDAGVPIKAPVAGISCGLITKPD-------SDEFMTMVDI 482
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI-KLQKD 236
ED D+D T G I +Q + + + ++ ++
Sbjct: 483 QGLEDFFGDMDFKVGGTHKG-ITAIQVDIKVDGLTPAIIKEAFEKTRKARLYILDEVMLK 541
Query: 237 VISN 240
I
Sbjct: 542 AIPE 545
Score = 101 bits (252), Expect = 7e-20, Method: Composition-based stats.
Identities = 34/231 (14%), Positives = 79/231 (34%), Gaps = 27/231 (11%)
Query: 12 REISLTRRVSKY-AEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKHGWITAEYGML 66
R + + + + GSC V++G+T ++ T E V + + + G +
Sbjct: 15 RPLVVETGKTCGLSNGSCWVRYGETVVMANVTASAKPREGVDFFPLSVDYEERLYSVGKI 74
Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
P S R G+ ++ R + R +R + +++ ++ D
Sbjct: 75 PGSFTKR------EGKPTEKAILTSRCVDRPIRPLFPKDMRNDVSVVMTVLSVEPDNSPE 128
Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
A + +A G ++ I+ G++ G +++ + + D
Sbjct: 129 IAGMIATSIA-------------ISISDIPWNGPISGINVGLVDGEIVLNPTLEQRAKTD 175
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
+ T IV ++ A +D + + I ++ KD+
Sbjct: 176 LVLTVAGTAE-KIVMIEAGANEVP--EDTMLEAIMKGHEEIKKMVAFIKDI 223
>gi|187934276|ref|YP_001885477.1| polynucleotide phosphorylase/polyadenylase [Clostridium botulinum B
str. Eklund 17B]
gi|226702638|sp|B2TJ61|PNP_CLOBB RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|187722429|gb|ACD23650.1| polyribonucleotide nucleotidyltransferase [Clostridium botulinum B
str. Eklund 17B]
Length = 704
Score = 137 bits (345), Expect = 1e-30, Method: Composition-based stats.
Identities = 43/243 (17%), Positives = 85/243 (34%), Gaps = 16/243 (6%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHG 57
R GR +++R + + G+ L G T ++T AT + ++ I +
Sbjct: 312 RPDGRAFDEVRPLGCEIGLLPRTHGTGLFTRGLTQVMTVATLGAVGDIQILDGIDEAQSK 371
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y S G R+ G RAL ++ I + +
Sbjct: 372 RYMHHYNFPGYSVGEVKPLRGPGRREIGHGAL----AERALEPLIPSEEEFPYTIRLVSE 427
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
V+ ++G T A++ G+ +AL D ++ + + + + + D+
Sbjct: 428 VLSSNGSTSQASVCGSTLALLDAGVPLKRPAAGIAMGLITSED-------LSEEQVLTDI 480
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T G I +Q + FS + + A+ ++ +
Sbjct: 481 QGIEDFFGDMDFKVAGTTEG-ITSIQVDTKLKGFSFNVVENAIRDARKARMTILDKINEC 539
Query: 238 ISN 240
IS+
Sbjct: 540 ISS 542
Score = 85.3 bits (209), Expect = 7e-15, Method: Composition-based stats.
Identities = 36/233 (15%), Positives = 73/233 (31%), Gaps = 27/233 (11%)
Query: 13 EISLTRRVSKYAEGSCLV-KFGDTHLLTTATLEEK----VPMWIRNTKHGWITAEYGMLP 67
E+ + + +GDT +LT + + + + ++ G +P
Sbjct: 13 EMKVEFGKIGMLSNAATFMSYGDTVILTNVNASSEPRVGIDFFPLSVEYEERLYAVGKIP 72
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R GR ++ R + R LR + Q++ ++ D
Sbjct: 73 GGFIKR------EGRPSEKAILNGRAVDRTLRPLFPKGYRNDVQVVCTVVSVEKDNLPEI 126
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
AI A +AL S VAA+ G++ IV+ + E +
Sbjct: 127 LAINAASMALC-------------LSSIPFTIPVAAVQVGLIDNNFIVNPNATEREESTL 173
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
T ++ ++ +D + D +I Q++ +S
Sbjct: 174 HLTVCATKE-RVMMIEAGGNE--IPEDIMIDAIKFGFDECQKIINFQEEAVSK 223
>gi|297620923|ref|YP_003709060.1| polyribonucleotide nucleotidyltransferase [Waddlia chondrophila WSU
86-1044]
gi|297376224|gb|ADI38054.1| polyribonucleotide nucleotidyltransferase [Waddlia chondrophila WSU
86-1044]
Length = 698
Score = 137 bits (344), Expect = 1e-30, Method: Composition-based stats.
Identities = 43/240 (17%), Positives = 85/240 (35%), Gaps = 18/240 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTH--LLTTATLEEKVPMWIRNTKHGWI 59
R GR NQ+R I + + + G L G+T + T + G
Sbjct: 317 RSDGRATNQVRPIWIEQGLLPRTHGCSLFTRGETQTVAICTLGGNNMAQRYEDLNGEGSR 376
Query: 60 TAE--YGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
+ Y P S G + R+ G + RAL S++ I ++ +
Sbjct: 377 SFYLQYFFPPFSVGEVGRVGPPGRREVGHGKL----AERALASILPSKEEFPYTIRLESN 432
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ G +A+ D + + + +L+ + D+
Sbjct: 433 ITESNGSSSMASVCGGCLAMMDAGVPITRPVSGIAMGLILE---------ENHYTILSDI 483
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED+ D+D +G I Q + + D A L AK+ +++ +
Sbjct: 484 LGIEDALGDMDFKVTGDKNG-ITAFQMDIKVEGITIDIMRAALAQAKEGRIHILEKMFEA 542
Score = 92.6 bits (228), Expect = 5e-17, Method: Composition-based stats.
Identities = 36/228 (15%), Positives = 73/228 (32%), Gaps = 27/228 (11%)
Query: 13 EISLTRR-VSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKHGWITAEYGMLP 67
EI+ +++ A G+ +VK G+T L +A E V + A G
Sbjct: 14 EITFETGQIARQANGAVVVKSGETMLFCSACATAEPLENVDFLPLRVDYQEKFASAGKTL 73
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R GR R + R+I R +R + + Q++
Sbjct: 74 GGFIKR------EGRPTERETLVCRLIDRPIRPLFEEGYYQDTQLLSYVWSYDGVNSPDA 127
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
L + LK V A+ GM+ G I++ +
Sbjct: 128 -------------LAICAASAALTISDIPLKKAVGAVRVGMIDGQFILNPTVEHQEKSVL 174
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
D T+ ++ ++G + +++ +++ I + + +
Sbjct: 175 DLMIAGTED-AVLMIEGYCK--FLTEEQVIEAISIGHQGIQTICRALE 219
>gi|187610337|sp|Q8FPB7|PNP_COREF RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
Length = 752
Score = 137 bits (344), Expect = 1e-30, Method: Composition-based stats.
Identities = 43/242 (17%), Positives = 86/242 (35%), Gaps = 14/242 (5%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKH 56
R+ GR + +R++ + + A GS L + G+T +L TL+ E+ +
Sbjct: 366 FRIDGRGVSDIRDLGVEVELIPRAHGSSLFERGETQILGVTTLDMLKMEQHIDSLAPVDT 425
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P STG + + R+ G RA+ V+ I
Sbjct: 426 KRYMHHYNFPPYSTGETGRVGSPKRREIGHGAL----AERAVLPVIPSREDFPYAIRQVS 481
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+ + ++G T ++ + ++L++ ++ + V G + D
Sbjct: 482 EALGSNGSTSMGSVCASTLSLYNAGVPLKAPVAGIAMGLVSDE-----VDGKTEYVALTD 536
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED+ D+D T I +Q + L A+D +++ +
Sbjct: 537 ILGAEDAFGDMDFKVAGTAEF-ITALQLDTKLDGIPSKVLADALEQARDARLAILETMAE 595
Query: 237 VI 238
VI
Sbjct: 596 VI 597
Score = 70.6 bits (171), Expect = 2e-10, Method: Composition-based stats.
Identities = 38/254 (14%), Positives = 70/254 (27%), Gaps = 33/254 (12%)
Query: 12 REISLTRR-VSKYAEGSCLVKFG-DTHLLTTATLEEKVPMWIRNT----KHGWITAEYGM 65
R I +++ A+G+ +T LL T T + + G
Sbjct: 29 RTIRFETGQLARQADGAVTTYLDDETMLLATTTASNQPREGLDFFPLTVDVEERMYAAGR 88
Query: 66 LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125
+P S R GR + R+I R LR Q+II + +
Sbjct: 89 IPGSFFRR------EGRPSTEAILACRLIDRPLRPTFVKGLRNEVQVIITVMSVSPEDSY 142
Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG-------YPIVDLD 178
AI GA A + +++ + + + +
Sbjct: 143 DVVAINGASAATRISGLPVSGAVGGVRMALIADENHPEGQWVAFPTAEQQKASVFELVVA 202
Query: 179 YGEDSTIDVDANFVMTDSGHIVEVQGSAERATF----------SQDHFFAMLNLAKDRIA 228
+ F ++ V+ A ++ L AK I
Sbjct: 203 GRLVERKRGNKTF---SDVAVMMVEAGASENVVERIKEGAPAPTEKTVAEGLEAAKPFID 259
Query: 229 DLIKLQKDVISNEV 242
L + Q + ++ V
Sbjct: 260 LLCRAQ-EGLAQRV 272
>gi|317504248|ref|ZP_07962238.1| polyribonucleotide nucleotidyltransferase [Prevotella salivae DSM
15606]
gi|315664618|gb|EFV04295.1| polyribonucleotide nucleotidyltransferase [Prevotella salivae DSM
15606]
Length = 757
Score = 137 bits (344), Expect = 1e-30, Method: Composition-based stats.
Identities = 47/243 (19%), Positives = 84/243 (34%), Gaps = 18/243 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHG 57
RL GR+ +R I GS + + G+T L+T T L+EK+ + +
Sbjct: 324 RLDGRKTTDIRPIWCEVSPLPMPHGSAIFQRGETMSLSTCTLGTKLDEKMVDDVMEKSYQ 383
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P STG + V R+ G R L+ + + +
Sbjct: 384 RFLLHYNFPPFSTGEAKAQRGVGRREIGHGHL----AWRGLKGQIPEDY--PYTVRLVSQ 437
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+++++G + A + +AL D M+ + + + G + D+
Sbjct: 438 ILESNGSSSMATVCAGTLALMDAGVPMKKPVSGIAMGLIKN-------PGEDKYAILSDI 490
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T G + Q + S + L AK ++ +
Sbjct: 491 LGDEDHLGDMDFKTTGTRDG-LTATQMDIKCDGLSFEILEQALMQAKAGREHILNCMLET 549
Query: 238 ISN 240
IS
Sbjct: 550 ISE 552
Score = 102 bits (255), Expect = 3e-20, Method: Composition-based stats.
Identities = 38/241 (15%), Positives = 78/241 (32%), Gaps = 26/241 (10%)
Query: 3 LSGRQENQMREISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
GR I++ V+K A+G+ +++ G+T LL T +
Sbjct: 11 PDGRT------ITIETGKVAKQADGAAVLRMGNTVLLATVCAAKDAVPGTDFMPLQVDYR 64
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
E G+ R++ RALR + + + +
Sbjct: 65 EQYSAAGRFP--GGFTKREGKASDNEILTSRLVDRALRPLFPSNYHAEVYVQVMLLSADG 122
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
A A A+ + ++ + + G ++D + +
Sbjct: 123 VDQPDALAGFAASAAMAC-------------SDIPFEYAISEVRVARINGEFVIDPTFQQ 169
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
+ D+D T +I+ V+ E S+ L A + I + +LQ++ +S E
Sbjct: 170 MADADMDLMVAATKD-NIMMVE--GEMKEVSEQDLIDALKAASEAIKPMCELQEE-LSKE 225
Query: 242 V 242
+
Sbjct: 226 L 226
>gi|319946257|ref|ZP_08020497.1| polyribonucleotide nucleotidyltransferase [Streptococcus australis
ATCC 700641]
gi|319747639|gb|EFV99892.1| polyribonucleotide nucleotidyltransferase [Streptococcus australis
ATCC 700641]
Length = 783
Score = 137 bits (344), Expect = 1e-30, Method: Composition-based stats.
Identities = 41/239 (17%), Positives = 79/239 (33%), Gaps = 18/239 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56
+R GR+ +++R + GS L G T L+ T E ++ +
Sbjct: 362 VRPDGRKVDEIRPLDAVVDFLPRVHGSGLFTRGQTQALSILTLAPMGETQIIDGLDPEYK 421
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y S G + A R+ G RAL V+ I +
Sbjct: 422 KRFMHHYNFPQYSVGETGRYGAPGRREIGHGALG----ERALAQVLPSLEEFPYAIRLVA 477
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V++++G + A+I +AL ++ + + + D
Sbjct: 478 EVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISD---------GNNYTVLTD 528
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
+ ED D+D T G I +Q + + + L AK +++ + +
Sbjct: 529 IQGLEDHFGDMDFKVAGTRDG-ITALQMDIKIQGITAEILTEALAQAKKARFEILDVIE 586
Score = 112 bits (280), Expect = 4e-23, Method: Composition-based stats.
Identities = 42/232 (18%), Positives = 85/232 (36%), Gaps = 26/232 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKV---PMWIRNTKHGWITAEYGMLP 67
RE+ + V+K A GS +V++G++ +LT A + +K+ + + G P
Sbjct: 58 RELIVETGQVAKQANGSVVVRYGESTVLTAAVMSKKMATGDFFPLQVNYEEKMYAAGKFP 117
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R GR + R+I R +R + Q+I +
Sbjct: 118 GGFMKR------EGRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDENASAPM 171
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
AA+ G+ +A G +A + G + G I++ + +
Sbjct: 172 AAMFGSSLA-------------LSISDIPFDGPIAGVQVGYVDGQIIINPTQEQAEQSLL 218
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
+ T I V+ A+ S++ L + + +LI Q+++++
Sbjct: 219 ELTVAGTKH-AINMVESGAKE--LSEEIMLEALLKGHEAVKELIAFQEEIVA 267
>gi|187611321|sp|A9WPX4|PNP_RENSM RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
Length = 746
Score = 137 bits (344), Expect = 1e-30, Method: Composition-based stats.
Identities = 40/242 (16%), Positives = 82/242 (33%), Gaps = 14/242 (5%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
+R+ GR +R+++ V GS + + G+T ++ TL E+ +
Sbjct: 339 IRIDGRGLTDIRQLTAEVEVLPRVHGSAIFERGETQIMGVTTLNMLKMEQQIDSLSPVTR 398
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P STG + + R+ G RAL V+ I
Sbjct: 399 KRYMHNYNFPPYSTGETGRVGSPKRREIGHGAL----AERALVPVLPSREEFPYAIRQVS 454
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+ + ++G T ++ + ++L + ++ + V G + D
Sbjct: 455 EALSSNGSTSMGSVCASTLSLLNAGVPLKAPVAGIAMGLVSDQ-----VDGQTRYAALTD 509
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED+ D+D T + +Q + A L A++ ++ +
Sbjct: 510 ILGAEDAFGDMDFKVAGTSEF-VTAIQLDTKLDGIPASVLAAALKQAREARLHILGVLNA 568
Query: 237 VI 238
I
Sbjct: 569 AI 570
Score = 69.5 bits (168), Expect = 4e-10, Method: Composition-based stats.
Identities = 37/241 (15%), Positives = 71/241 (29%), Gaps = 39/241 (16%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGD-THLLTTATLEEKV----PMWIRNTKHGWITAEYGM 65
R I +++ A G+ +V D T LL+ T ++ + G
Sbjct: 21 RTIRFETGRLAQQAAGAAMVYIDDDTALLSATTAGKQPREGFDFFPLTVDVEERMYAAGR 80
Query: 66 LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125
+P S R GR + R++ R LR QI++ I D
Sbjct: 81 IPGSFFRR------EGRPSTEAILACRLMDRPLRPAFVKGLRNEVQIVVTVLAINPDELY 134
Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185
AI + ++ G + + ++ + + E
Sbjct: 135 DVVAINASSMSTQ-------------LSGLPFSGPIGGVRVALIEDQWVAFPRHSEMEKA 181
Query: 186 DVDANFVMTDSG---HIVEVQGSAERATF-----------SQDHFFAMLNLAKDRIADLI 231
+ +G I+ V+ A ++ +++ L AK I L
Sbjct: 182 VFNMVVAGRVAGDDVAIMMVEAEATDNSWNLIKENGATAPTEEIVSEGLEAAKPFIKALC 241
Query: 232 K 232
+
Sbjct: 242 E 242
>gi|254282476|ref|ZP_04957444.1| polyribonucleotide nucleotidyltransferase [gamma proteobacterium
NOR51-B]
gi|219678679|gb|EED35028.1| polyribonucleotide nucleotidyltransferase [gamma proteobacterium
NOR51-B]
Length = 717
Score = 137 bits (344), Expect = 1e-30, Method: Composition-based stats.
Identities = 41/241 (17%), Positives = 82/241 (34%), Gaps = 18/241 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +R I+ + GS L G+T + TL + ++ + +
Sbjct: 314 RIDGRDGRTVRPIACELDILSKVHGSALFTRGETQAIGAITLGSTRDAQIIDALEGERRD 373
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + S R+ G + R L +V+ I + +
Sbjct: 374 PFMLHYNFPPYSVGEAGRIGFTSRREIGHGRL----ARRGLAAVLPTEEEFPYTIRVVSE 429
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ + L ++ + V +G+ A+ +
Sbjct: 430 ITESNGSSSMASVCVGSLGLMAAGVPLKAPVAGIAMGLVKEGNNFAVLTD---------I 480
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T SG + +Q + ++ L A ++ V
Sbjct: 481 LGDEDHLGDMDFKVAGTASG-VTALQMDIKIEGINEQIMEIALEQALQARLHILGQMNAV 539
Query: 238 I 238
I
Sbjct: 540 I 540
Score = 111 bits (277), Expect = 8e-23, Method: Composition-based stats.
Identities = 33/234 (14%), Positives = 72/234 (30%), Gaps = 28/234 (11%)
Query: 13 EISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT----KHGWITAEYGMLP 67
E++L +++ A G+ +V GDT +L T + + T G +P
Sbjct: 14 EVTLETGRIARQASGAVMVTMGDTSVLCTVVAARSMRPGQDFFPLAVHYIEKTYSVGKIP 73
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R R + R+I R +R + + Q++ +
Sbjct: 74 GGFFKR------EARPSEKETLTSRLIDRPIRPLFPNGFMNEVQVVCTVMSAGPEIDPDI 127
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC-GYPIVDLDYGEDSTID 186
A+ G A G + G +++ Y +
Sbjct: 128 PAMIGTSAA-------------LAISGAPFNGPIGGARVGFTEAEGYLLNPTYSALKSSK 174
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
+D T ++ V+ A ++D + A + +I +++++
Sbjct: 175 LDMVVAGTKD-AVLMVESQA--DQLTEDQMLGAVLFAHQEMQAVIHAINELVAD 225
>gi|330508837|ref|YP_004385265.1| exosome complex exonuclease 1 [Methanosaeta concilii GP-6]
gi|328929645|gb|AEB69447.1| exosome complex exonuclease 1 [Methanosaeta concilii GP-6]
Length = 253
Score = 137 bits (344), Expect = 1e-30, Method: Composition-based stats.
Identities = 56/239 (23%), Positives = 99/239 (41%), Gaps = 22/239 (9%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKV-PMWIRNTKHGWI 59
+RL GR+ +++R + + + A+GSC ++ G ++ +V P ++ +
Sbjct: 16 LRLDGRRADELRPVKIEVGILARADGSCYIEMGGNKVIAAVYGPREVHPRHLQEVTRAIV 75
Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119
Y M S R + RS E+ ++ AL V+ S I + +V+
Sbjct: 76 RYRYNMASFSVEERKRPG-----PDRRSYELSKVSREALEPVILTSFFPRSVIDVFVEVL 130
Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179
QAD GTRTA I A VAL D +K +++ + G + ++D
Sbjct: 131 QADAGTRTAGINAAAVALADAGI-------------PMKSMISSCAAGKVGDTIVLDPMK 177
Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
ED+ D MT +G I +Q + D F + +A D+ +LQ+ +
Sbjct: 178 EEDNFGQADLPIAMTPNGDITLMQMDGN---LTPDEFGQAVTMAMKGAKDIYELQRRAL 233
>gi|239982654|ref|ZP_04705178.1| polynucleotide phosphorylase/polyadenylase [Streptomyces albus
J1074]
gi|291454495|ref|ZP_06593885.1| polynucleotide phosphorylase/polyadenylase [Streptomyces albus
J1074]
gi|291357444|gb|EFE84346.1| polynucleotide phosphorylase/polyadenylase [Streptomyces albus
J1074]
Length = 735
Score = 137 bits (344), Expect = 1e-30, Method: Composition-based stats.
Identities = 41/242 (16%), Positives = 83/242 (34%), Gaps = 14/242 (5%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
+R+ GR +R ++ GS L + G+T +L TL E+ +
Sbjct: 338 VRIDGRGVTDIRTLAAEVEAIPRVHGSALFERGETQILGVTTLNMLRMEQQLDTLSPVTR 397
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P STG + + R+ G RAL V+ I
Sbjct: 398 KRYMHNYNFPPYSTGETGRVGSPKRREIGHGAL----AERALVPVLPTREEFPYAIRQVS 453
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+ + ++G T ++ + ++L + ++ + + + G + D
Sbjct: 454 EALGSNGSTSMGSVCASTMSLLNAGVPLKAPVAGIAMGLISQEID-----GETHYVTLTD 508
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED+ D+D T + + +Q + A L A+D ++ + +
Sbjct: 509 ILGAEDAFGDMDFKVAGTKTF-VTALQLDTKLDGIPASVLAAALKQARDARLHILDVMNE 567
Query: 237 VI 238
I
Sbjct: 568 AI 569
Score = 84.5 bits (207), Expect = 1e-14, Method: Composition-based stats.
Identities = 43/241 (17%), Positives = 69/241 (28%), Gaps = 31/241 (12%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGD-THLLTTATLEEKVPMWIRNT----KHGWITAEYGM 65
R I ++K A GS + D T +L+ T +K + G
Sbjct: 20 RTIRFETGRLAKQAAGSAVAYLDDDTMVLSATTASKKPKDQLDFFPLTVDVEERMYAAGK 79
Query: 66 LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125
+P S R GR + R+I R LR QI+ + D
Sbjct: 80 IPGSFFRR------EGRPSEDAILTCRLIDRPLRPSFRKGLRNEIQIVETIMALNPDHLY 133
Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185
AI A + +++ + V + L + G
Sbjct: 134 DVVAINAASCSTQLAGLPFSGPIGGTRVALINGQWVGFPTHTELEDAVFDMVVAGR---- 189
Query: 186 DVDANFVMTDSGHIVEVQGSAERATF----------SQDHFFAMLNLAKDRIADLIKLQK 235
+ I+ V+ A T +++ A L AK I L K Q
Sbjct: 190 -----VLDDGDVAIMMVEAEATEKTIQLVKDGAAAPTEEVVAAGLEAAKPFIKALCKAQS 244
Query: 236 D 236
+
Sbjct: 245 E 245
>gi|227495155|ref|ZP_03925471.1| polynucleotide phosphorylase/polyadenylase [Actinomyces coleocanis
DSM 15436]
gi|226831607|gb|EEH63990.1| polynucleotide phosphorylase/polyadenylase [Actinomyces coleocanis
DSM 15436]
Length = 782
Score = 137 bits (344), Expect = 1e-30, Method: Composition-based stats.
Identities = 45/244 (18%), Positives = 83/244 (34%), Gaps = 14/244 (5%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
+R+ GR+ +R +S V GS L + G+T +L TL E+ +
Sbjct: 339 VRIDGRKPTDIRSLSAEVEVLPRVHGSALFQRGETQILGVTTLNMLRMEQQLDNLSPVTA 398
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
+Y P STG + + R+ G RAL V+ I
Sbjct: 399 KRYMHQYNFPPFSTGETGRVGSPKRREIGHGAL----AERALVPVIPAREDFPYAIRQVS 454
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+ + ++G T ++ + ++L + + + G+ + D
Sbjct: 455 EALGSNGSTSMGSVCASTLSLLQAGVPLRAPVAGIAMGLMT-----GEVDGVQKAVTLTD 509
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T +I +Q + + L A+D ++ L
Sbjct: 510 ILGIEDGFGDMDFKVAGTRE-YITALQLDTKLDGIDSEVLAGALAQARDARFAILDLINQ 568
Query: 237 VISN 240
IS
Sbjct: 569 AISE 572
Score = 75.7 bits (184), Expect = 5e-12, Method: Composition-based stats.
Identities = 37/233 (15%), Positives = 71/233 (30%), Gaps = 14/233 (6%)
Query: 12 REISLTRR-VSKYAEGSCLVKFG-DTHLLTTATLE----EKVPMWIRNTKHGWITAEYGM 65
R I +++ A GS + +T +L+ T+ ++ + G
Sbjct: 22 RVIRFETGRLARQAAGSAMAYLDDETAILSATTVGKHPKDQFDFFPLTVDVEERQYAAGK 81
Query: 66 LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125
+P S R GR G + R++ R LR Q++ I D
Sbjct: 82 IPGSFFRR------EGRPGTEAILACRLMDRPLRPAFVKGLRNEVQVVGTVLAIHPDDAY 135
Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG-YPIVDLDYGEDST 184
AI A ++ +L+ + VA + + +
Sbjct: 136 DVLAINAASMSTQIAGLPFSGPIGGTRLALIDGQWVAFPRYSEMERSTFNIVVAGRVVGD 195
Query: 185 IDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
+V++ +A +++ L AK I L + Q +V
Sbjct: 196 DVAIMMVEAGGGDDMVDL-MAAGGTVPTEEVVADGLEAAKPIIRQLCEAQLEV 247
>gi|150016092|ref|YP_001308346.1| polynucleotide phosphorylase/polyadenylase [Clostridium
beijerinckii NCIMB 8052]
gi|187610256|sp|A6LSR0|PNP_CLOB8 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|149902557|gb|ABR33390.1| Polyribonucleotide nucleotidyltransferase [Clostridium beijerinckii
NCIMB 8052]
Length = 701
Score = 137 bits (344), Expect = 1e-30, Method: Composition-based stats.
Identities = 47/242 (19%), Positives = 85/242 (35%), Gaps = 16/242 (6%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R GR +Q+R + + G+ L G T ++T ATL E ++ I +
Sbjct: 312 RPDGRAFDQIRPLGCEIGILPRTHGTGLFTRGLTQVMTVATLGSISEIQILDGIDEAQSK 371
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y S G R+ G RAL ++ I + +
Sbjct: 372 RYMHHYNFPGYSVGEVKPLRGPGRREIGHGAL----AERALEPLIPSEEEFPYTIRLVSE 427
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
V+ ++G T A++ G+ +AL D ++ + + + + + D+
Sbjct: 428 VLSSNGSTSQASVCGSTLALLDAGVPIKRPAAGIAMGLITSED-------LSEEAVLTDI 480
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T G I +Q + FS + + A+ +I +
Sbjct: 481 QGIEDFFGDMDFKVAGTTEG-ITSIQVDTKLQGFSFNVVENAIRDARKARLTIIDKINEC 539
Query: 238 IS 239
IS
Sbjct: 540 IS 541
Score = 88.0 bits (216), Expect = 1e-15, Method: Composition-based stats.
Identities = 36/234 (15%), Positives = 71/234 (30%), Gaps = 27/234 (11%)
Query: 12 REISLTRRVSKYAEGSCLVK-FGDTHLLTTATLEEKVPMWIRNTK----HGWITAEYGML 66
RE+ + + +GDT +LT E+ I + G +
Sbjct: 12 RELKVEFGKVGMLSNAATFTSYGDTVILTNVNASEQPREGIDFFPLSVEYEERLYAVGKI 71
Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
P R GR ++ R + R LR + Q++ ++ D
Sbjct: 72 PGGFIKR------EGRPSEKAILNGRAVDRTLRPLFPKGYRNDVQVVTTVVSVEKDNLPE 125
Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
AI A +AL S AA+ G++ G + + D
Sbjct: 126 ILAINAASLALC-------------LSSIPYTIPAAAVQVGIIDGKFVTNPDTQGREKSI 172
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
+ T ++ ++ + +D + D +I Q++ ++
Sbjct: 173 LHLTVCATKE-RVMMIEAGGQE--IPEDTMIDAIKYGFDECQKIIAFQEEAVAK 223
>gi|167044510|gb|ABZ09185.1| putative 3' exoribonuclease family, domain 1 [uncultured marine
crenarchaeote HF4000_APKG6J21]
Length = 245
Score = 137 bits (344), Expect = 1e-30, Method: Composition-based stats.
Identities = 63/243 (25%), Positives = 101/243 (41%), Gaps = 23/243 (9%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKV-PMWIRNTKHGWI 59
+R GR+ N+ R++++ V K A+GS ++FG +L V P + N G +
Sbjct: 16 IRSDGRKVNETRKVTIKVGVLKNADGSAYIEFGGNKILAGVFGPRDVHPKHMSNPDTGIL 75
Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119
Y M P S R + R EI +++ AL V L I + +V+
Sbjct: 76 RVRYHMAPFSVSERK-----NPAPSRREIEISKVLKEALEPAVILEKFPRTAIDVYLEVL 130
Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179
QADGGTR AA+ A VAL D M D V + + G + I+D++
Sbjct: 131 QADGGTRCAALDAASVALADAGIPMRD-------------MVCSCAAGKVADALILDVNN 177
Query: 180 GEDSTIDVDANF-VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
ED D M + G I +Q + D F + L + + ++QK+ +
Sbjct: 178 EEDQAGQADMPIGYMPNFGKITLLQLDG---VLTTDEFKKCIELGIEGCKQVYEIQKNAL 234
Query: 239 SNE 241
+
Sbjct: 235 REK 237
>gi|281423345|ref|ZP_06254258.1| polyribonucleotide nucleotidyltransferase [Prevotella oris F0302]
gi|281402681|gb|EFB33512.1| polyribonucleotide nucleotidyltransferase [Prevotella oris F0302]
Length = 757
Score = 137 bits (344), Expect = 2e-30, Method: Composition-based stats.
Identities = 47/243 (19%), Positives = 84/243 (34%), Gaps = 18/243 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHG 57
RL GR+ +R I GS + + G+T L+T T L+EK+ + +
Sbjct: 324 RLDGRKTTDIRPIWCEVSPLPMPHGSAIFQRGETMSLSTCTLGTKLDEKMVDDVLEKSYM 383
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P STG + V R+ G R L+ + + +
Sbjct: 384 RFLLHYNFPPFSTGEAKAQRGVGRREIGHGHL----AWRGLKGQIPEDY--PYTVRLVSQ 437
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+++++G + A + +AL D M+ + + + G + D+
Sbjct: 438 ILESNGSSSMATVCAGTLALMDAGVPMKKPVSGIAMGLIKN-------PGEDKYAILSDI 490
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T G + Q + S + L AK ++ +
Sbjct: 491 LGDEDHLGDMDFKTTGTRDG-LTATQMDIKCDGLSFEILEQALMQAKAGREHILNCMLET 549
Query: 238 ISN 240
IS
Sbjct: 550 ISE 552
Score = 102 bits (254), Expect = 4e-20, Method: Composition-based stats.
Identities = 38/241 (15%), Positives = 78/241 (32%), Gaps = 26/241 (10%)
Query: 3 LSGRQENQMREISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
GR I++ V+K A+G+ +++ G+T LL T +
Sbjct: 11 PDGRT------ITIETGKVAKQADGAAVLRMGNTVLLATVCAAKDAVPGTDFMPLQVDYR 64
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
E G+ R++ RALR + + + +
Sbjct: 65 EQYSAAGRFP--GGFTKREGKASDNEILTSRLVDRALRPLFPSNYHAEVYVQVMLLSADG 122
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
A A A+ + ++ + + G ++D + +
Sbjct: 123 VDQPDALAGFAASAAMAC-------------SDIPFEYAISEVRVARINGEYVIDPTFQQ 169
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
+ D+D T +I+ V+ E S+ L A + I + +LQ++ +S E
Sbjct: 170 MADADMDLMVAATKD-NIMMVE--GEMKEVSEQDLIGALKAAAEAIKPMCELQEE-LSKE 225
Query: 242 V 242
+
Sbjct: 226 L 226
>gi|254425324|ref|ZP_05039042.1| 3' exoribonuclease family, domain 2 [Synechococcus sp. PCC 7335]
gi|196192813|gb|EDX87777.1| 3' exoribonuclease family, domain 2 [Synechococcus sp. PCC 7335]
Length = 716
Score = 137 bits (344), Expect = 2e-30, Method: Composition-based stats.
Identities = 41/239 (17%), Positives = 88/239 (36%), Gaps = 19/239 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSK-YAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTK 55
+R+ GR+ +++R+I+ V G+ L + G T +L+ T + ++ + +
Sbjct: 322 VRVDGRKLDEIRKITCRTGVLPTRVHGTGLFRRGLTQVLSVTTLGTPGDAQMMDDLHPGE 381
Query: 56 HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115
Y P S G + R+ G RAL V+ I +
Sbjct: 382 EKRYLHHYNFPPYSVGETRPMRSPGRREVGHGAL----AERALIPVLPSQEDFPYVIRVV 437
Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIV 175
+ + ++G T ++ G+ ++L D + + + + +G +
Sbjct: 438 SECLSSNGSTSMGSVCGSTLSLMDAGVPIMQPVSGAAMGLIREGDEV---------RILS 488
Query: 176 DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
D+ ED D+D T+SG I +Q + + +N A+ +++
Sbjct: 489 DIQGIEDFLGDMDFKVAGTESG-ITALQLDMKITGLPMEVIGEAINQARPARLHILEKM 546
Score = 96.8 bits (239), Expect = 2e-18, Method: Composition-based stats.
Identities = 49/242 (20%), Positives = 85/242 (35%), Gaps = 32/242 (13%)
Query: 3 LSGRQENQMREISLTRR-VSKYAEGSCLVKFGDTHLLTTAT---LEEKVPMWIRNTKHGW 58
+ GR I L + A GS L+ GDT +L TAT E + +
Sbjct: 10 IDGRD------IQLKAGLFAPQAGGSVLISSGDTAVLVTATRSSGREGIDFLPLLVDYEE 63
Query: 59 ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDV 118
G +P R GR R+ R+I R +R + QI+
Sbjct: 64 RLYAAGRIPGGFLRR------EGRPPERATLTSRLIDRPMRPLFPQWIRDDIQIVATTLS 117
Query: 119 IQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLD 178
+ D A TGA +A+ G +A + G++ I++
Sbjct: 118 MDEDVPPDVLAATGASIAVLLAEI-------------PFNGPMATVRVGLVGDDFIINPT 164
Query: 179 YGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
Y E ++D + G ++ V+ A + + ++ + + DLI+ Q D++
Sbjct: 165 YQEIENGELDLIVAGSPDG-VIMVEAGANQ--LPEQDVIEAIDFGYEVVRDLIQAQLDLV 221
Query: 239 SN 240
Sbjct: 222 EE 223
>gi|329896238|ref|ZP_08271416.1| Polyribonucleotide nucleotidyltransferase [gamma proteobacterium
IMCC3088]
gi|328921909|gb|EGG29276.1| Polyribonucleotide nucleotidyltransferase [gamma proteobacterium
IMCC3088]
Length = 746
Score = 137 bits (344), Expect = 2e-30, Method: Composition-based stats.
Identities = 41/242 (16%), Positives = 86/242 (35%), Gaps = 18/242 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +R+I+ + + GS L G+T + TL + ++ + +
Sbjct: 314 RIDGRDGKTVRQIACSVDLLPRVHGSALFTRGETQAIGAVTLGSPRDAQIIDALEGERKD 373
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + A R+ G + R L +V+ I + +
Sbjct: 374 AFMLHYNFPPYSVGEAGRVGATGRREIGHGRL----ARRGLAAVLPNQDEFPYTIRVVSE 429
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ +A+ ++ + V +G+ A+ +
Sbjct: 430 ITESNGSSSMASVCVGSLAMMAAGVPLKAPVAGIAMGLVKEGNQFAVLTD---------I 480
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T +G + +Q + ++ L A ++ V
Sbjct: 481 LGDEDHLGDMDFKVAGTAAG-VTALQMDIKIEGINEQIMEIALEQALHARLHILGQMNSV 539
Query: 238 IS 239
IS
Sbjct: 540 IS 541
Score = 114 bits (284), Expect = 1e-23, Method: Composition-based stats.
Identities = 34/233 (14%), Positives = 72/233 (30%), Gaps = 28/233 (12%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT----KHGWITAEYGMLPR 68
++L +++ A G+ LV +T +L T + + + G +P
Sbjct: 15 VTLETGRIARQATGAVLVTVENTTVLVTVVAAKSQKPGQDFFPLSVHYQEKSYAVGKIPG 74
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
R GR + R+I R +R + + Q++
Sbjct: 75 GFFKR------EGRPSEKETLTSRLIDRPIRPLFADGFMNEVQVMCTVMAADDHIDPDIP 128
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML-CGYPIVDLDYGEDSTIDV 187
A+ G A G + A G +++ DY D+
Sbjct: 129 AMIGTSAA-------------LAISGVPFNGPIGAARVGFNAQEGYLLNPDYNALKGSDL 175
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
D T ++ V+ A+ ++D + A + +I ++++
Sbjct: 176 DMVVAGTKD-AVLMVESEAKE--LTEDQMLGAVLFAHQEMQTVIAAINELVAE 225
>gi|163839428|ref|YP_001623833.1| polynucleotide phosphorylase/polyadenylase [Renibacterium
salmoninarum ATCC 33209]
gi|162952904|gb|ABY22419.1| polyribonucleotide nucleotidyltransferase [Renibacterium
salmoninarum ATCC 33209]
Length = 778
Score = 137 bits (344), Expect = 2e-30, Method: Composition-based stats.
Identities = 40/242 (16%), Positives = 82/242 (33%), Gaps = 14/242 (5%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
+R+ GR +R+++ V GS + + G+T ++ TL E+ +
Sbjct: 371 IRIDGRGLTDIRQLTAEVEVLPRVHGSAIFERGETQIMGVTTLNMLKMEQQIDSLSPVTR 430
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P STG + + R+ G RAL V+ I
Sbjct: 431 KRYMHNYNFPPYSTGETGRVGSPKRREIGHGAL----AERALVPVLPSREEFPYAIRQVS 486
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+ + ++G T ++ + ++L + ++ + V G + D
Sbjct: 487 EALSSNGSTSMGSVCASTLSLLNAGVPLKAPVAGIAMGLVSDQ-----VDGQTRYAALTD 541
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED+ D+D T + +Q + A L A++ ++ +
Sbjct: 542 ILGAEDAFGDMDFKVAGTSEF-VTAIQLDTKLDGIPASVLAAALKQAREARLHILGVLNA 600
Query: 237 VI 238
I
Sbjct: 601 AI 602
Score = 69.1 bits (167), Expect = 5e-10, Method: Composition-based stats.
Identities = 37/241 (15%), Positives = 71/241 (29%), Gaps = 39/241 (16%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGD-THLLTTATLEEKV----PMWIRNTKHGWITAEYGM 65
R I +++ A G+ +V D T LL+ T ++ + G
Sbjct: 53 RTIRFETGRLAQQAAGAAMVYIDDDTALLSATTAGKQPREGFDFFPLTVDVEERMYAAGR 112
Query: 66 LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125
+P S R GR + R++ R LR QI++ I D
Sbjct: 113 IPGSFFRR------EGRPSTEAILACRLMDRPLRPAFVKGLRNEVQIVVTVLAINPDELY 166
Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185
AI + ++ G + + ++ + + E
Sbjct: 167 DVVAINASSMSTQ-------------LSGLPFSGPIGGVRVALIEDQWVAFPRHSEMEKA 213
Query: 186 DVDANFVMTDSG---HIVEVQGSAERATF-----------SQDHFFAMLNLAKDRIADLI 231
+ +G I+ V+ A ++ +++ L AK I L
Sbjct: 214 VFNMVVAGRVAGDDVAIMMVEAEATDNSWNLIKENGATAPTEEIVSEGLEAAKPFIKALC 273
Query: 232 K 232
+
Sbjct: 274 E 274
>gi|302763984|ref|XP_002965413.1| hypothetical protein SELMODRAFT_84724 [Selaginella moellendorffii]
gi|300166227|gb|EFJ32833.1| hypothetical protein SELMODRAFT_84724 [Selaginella moellendorffii]
Length = 705
Score = 137 bits (344), Expect = 2e-30, Method: Composition-based stats.
Identities = 43/244 (17%), Positives = 83/244 (34%), Gaps = 10/244 (4%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
+R+ GR +R++ + GS L G+T +L T TL + + I
Sbjct: 315 IRVDGRSLTDVRDLYCEAGIYPALHGSSLFSRGNTQVLCTVTLGAPEDAQKLDSIVGPPK 374
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P S K ++ R+ G ++ + L + ++
Sbjct: 375 KRFMVHYSFPPFSVNEVGKVGGLNRREVGHGTLAEKALVALLP---PEDENFPYSVRVNS 431
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V+ +DG + A + G +AL D ++ + + A + + + D
Sbjct: 432 EVMASDGSSSMATVCGGSLALMDAGIPLKSHVAGISVGLITNVD--AETGEIKNYKILTD 489
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T G + +Q + L A ++ L +
Sbjct: 490 ILGLEDHLGDMDFKIAGTKKG-VTAIQLDIKLPGVPLHILCEALEPAYVARKKILDLMEK 548
Query: 237 VISN 240
IS
Sbjct: 549 EISK 552
Score = 84.9 bits (208), Expect = 9e-15, Method: Composition-based stats.
Identities = 38/230 (16%), Positives = 75/230 (32%), Gaps = 20/230 (8%)
Query: 14 ISLTRRVSKY-AEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGN 72
++ A G+ + G+T +L T +E++ E N
Sbjct: 15 LTFETGKLAQFAAGAVVCGAGETKVLVTVVSDERLDAGRDFMPLQVEYREKSYAQGKIPN 74
Query: 73 RVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITG 132
R + ++ R+I R++R + QI+ + + A
Sbjct: 75 TFMRREGAPKEREL--LCGRVIDRSIRPLFPKGYYFETQIMANVLSSDGEQDPDILAANA 132
Query: 133 AWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFV 192
A AL G + + G + G +V+ D S D++ +
Sbjct: 133 ASAALALSDV-------------PWNGPIGVVRIGRVDGKFVVNPDMDTLSGSDLNLIYS 179
Query: 193 MTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNEV 242
T + ++ A + F A L LA + LI+ Q+ ++ +V
Sbjct: 180 CTAERSL-MIETQARE--ITNKDFTAALKLAHSEASKLIEPQRR-LAAKV 225
>gi|188589111|ref|YP_001920624.1| polynucleotide phosphorylase/polyadenylase [Clostridium botulinum
E3 str. Alaska E43]
gi|251780820|ref|ZP_04823740.1| polyribonucleotide nucleotidyltransferase [Clostridium botulinum E1
str. 'BoNT E Beluga']
gi|226702637|sp|B2V4H5|PNP_CLOBA RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|188499392|gb|ACD52528.1| polyribonucleotide nucleotidyltransferase [Clostridium botulinum E3
str. Alaska E43]
gi|243085135|gb|EES51025.1| polyribonucleotide nucleotidyltransferase [Clostridium botulinum E1
str. 'BoNT E Beluga']
Length = 704
Score = 137 bits (344), Expect = 2e-30, Method: Composition-based stats.
Identities = 44/243 (18%), Positives = 86/243 (35%), Gaps = 16/243 (6%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHG 57
R GR +Q+R + + G+ L G T ++T AT + ++ I +
Sbjct: 312 RPDGRAFDQVRPLGCEVGLLPRTHGTGLFTRGLTQVMTVATLGAVGDIQILDGIDEAQSK 371
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y S G R+ G RAL ++ I + +
Sbjct: 372 RYMHHYNFPGYSVGEVKPLRGPGRREIGHGAL----AERALEPLIPSEEEFPYTIRLVSE 427
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
V+ ++G T A++ G+ +AL D ++ + + + + + D+
Sbjct: 428 VLSSNGSTSQASVCGSTLALLDAGVPLKRPAAGIAMGLITSED-------LSEEQVLTDI 480
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T G I +Q + FS + + A+ +++ +
Sbjct: 481 QGIEDFFGDMDFKVAGTTEG-ITSIQVDTKLKGFSFNVVENAIRDARKARMTILEKINEC 539
Query: 238 ISN 240
IS+
Sbjct: 540 ISS 542
Score = 83.7 bits (205), Expect = 2e-14, Method: Composition-based stats.
Identities = 36/233 (15%), Positives = 74/233 (31%), Gaps = 27/233 (11%)
Query: 13 EISLTRRVSKYAEGSCLV-KFGDTHLLTTATLEEK----VPMWIRNTKHGWITAEYGMLP 67
E+ + + +GDT +LT + + + + ++ G +P
Sbjct: 13 EMKVEFGKIGMLSNAATFMSYGDTVILTNVNASSEPRVGIDFFPLSVEYEERLYAVGKIP 72
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R GR ++ R + R LR + Q++ ++ D
Sbjct: 73 GGFIKR------EGRPSEKAILNGRAVDRTLRPLFPKGYRNDVQVVCTVVSVEKDNLPEI 126
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
AI A +AL S VAA+ G++ IV+ + E +
Sbjct: 127 LAINAASMALC-------------LSSIPFAMPVAAVQVGLIDNNFIVNPNATEREESTL 173
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
T ++ ++ +D A + D ++I Q++ +
Sbjct: 174 HLTVCATKE-RVMMIEAGGNE--IPEDIMIAAIKFGFDECQNIINFQEEAVKK 223
>gi|145295879|ref|YP_001138700.1| polynucleotide phosphorylase/polyadenylase [Corynebacterium
glutamicum R]
gi|187610291|sp|A4QEY2|PNP_CORGB RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|140845799|dbj|BAF54798.1| hypothetical protein [Corynebacterium glutamicum R]
Length = 753
Score = 137 bits (344), Expect = 2e-30, Method: Composition-based stats.
Identities = 44/243 (18%), Positives = 87/243 (35%), Gaps = 14/243 (5%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKH 56
R+ GR +R++++ + A GS L + G+T +L TL+ E+ +
Sbjct: 367 FRIDGRGVTDIRDLAVEVELIPRAHGSSLFERGETQILGVTTLDMLKMEQQIDSLAPGDA 426
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P STG + + R+ G RA+ V+ I
Sbjct: 427 KRYMHHYNFPPYSTGETGRVGSPKRREIGHGAL----AERAVLPVIPSREEFPYSIRQVS 482
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+ + ++G T ++ + ++L++ ++ + V + G + D
Sbjct: 483 EALGSNGSTSMGSVCASTLSLYNAGVPLKAPVAGIAMGLV-----SGEIDGKTEYVALTD 537
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED+ D+D T I +Q + L A+D ++ D
Sbjct: 538 ILGAEDAFGDMDFKVAGTADF-ITALQLDTKLDGIPSKVLSDALEQARDARLTILNTMAD 596
Query: 237 VIS 239
VI+
Sbjct: 597 VIN 599
Score = 71.4 bits (173), Expect = 1e-10, Method: Composition-based stats.
Identities = 39/251 (15%), Positives = 69/251 (27%), Gaps = 27/251 (10%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGD-THLLTTATLE----EKVPMWIRNTKHGWITAEYGM 65
R I +++ A+G+ D T LL T T E + G
Sbjct: 29 RTIRFETGQLARQADGAVTTYLDDDTMLLATTTASNQPREGFDFFPLTVDVEERMYAAGR 88
Query: 66 LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125
+P S R GR + R+I R LR QI++ + +
Sbjct: 89 IPGSFFRR------EGRPSTEAILACRLIDRPLRPTFVKGLRNEVQIVVTVMSMNPEDYY 142
Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP-IVDLDYGEDST 184
AI GA A + +++ V+ + +
Sbjct: 143 DVVAINGASAATRISGLPVSGAVGGVRMALVVDEKHPEGQWVAFPTHAQHEQSVFEIVVA 202
Query: 185 IDVDANFVMTD---SGHIVEVQGSAERATF----------SQDHFFAMLNLAKDRIADLI 231
+ ++ V+ A ++ L AK I L
Sbjct: 203 GRLVERKRGNKTFSDVAVMMVEAGASENVVNRVKDGAPAPTEKIVSDGLEAAKPFIDILC 262
Query: 232 KLQKDVISNEV 242
+ Q + ++ V
Sbjct: 263 RAQ-EGLAQRV 272
>gi|67921975|ref|ZP_00515491.1| Polyribonucleotide nucleotidyltransferase [Crocosphaera watsonii WH
8501]
gi|67856191|gb|EAM51434.1| Polyribonucleotide nucleotidyltransferase [Crocosphaera watsonii WH
8501]
Length = 715
Score = 137 bits (344), Expect = 2e-30, Method: Composition-based stats.
Identities = 44/246 (17%), Positives = 86/246 (34%), Gaps = 20/246 (8%)
Query: 1 MRLSGRQENQMREISLTRRVSK-YAEGSCLVKFGDTHLLTTATLE-----EKVPMWIRNT 54
+R+ GR+ +++R I+ + GS L G T + + ATL + + +
Sbjct: 323 IRVDGRKLDEVRPIACRVGLMPPRVHGSALFTRGLTQVFSLATLGTPGDAQDLGDDLHPE 382
Query: 55 KHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIII 114
Y P S G + R+ G RA+ V+ + +
Sbjct: 383 DEKRYLHHYNFPPFSMGETKPLRSPGRREIGHGAL----AERAILPVLPPQEEFPYVVRV 438
Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPI 174
+V+ ++G T ++ G+ +AL D + + + + +G +
Sbjct: 439 VSEVVSSNGSTSMGSVCGSTLALMDAGVPIIKPVSGAAMGLIREGKEV---------RIL 489
Query: 175 VDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
D+ ED D+D TDSG I +Q + + D + A ++
Sbjct: 490 TDIQGIEDFLGDMDFKVAGTDSG-ITALQMDMKITGLTMDIVAKAIQQALPARLHILDKM 548
Query: 235 KDVISN 240
I+
Sbjct: 549 LATIAQ 554
Score = 74.5 bits (181), Expect = 1e-11, Method: Composition-based stats.
Identities = 47/235 (20%), Positives = 82/235 (34%), Gaps = 26/235 (11%)
Query: 10 QMREISLTRRV-SKYAEGSCLVKFGD---THLLTTATLEEKVPMWIRNTKHGWITAEYGM 65
R+I L + + A G+ L++ D TT E + + G
Sbjct: 11 DGRDIRLKLGLLAPQAGGAVLIQSQDTAVLVTATTTKGREGIDFLPLTVDYEERLYAAGR 70
Query: 66 LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125
+P R GR R+ I R+I R LR + QII + +
Sbjct: 71 IPGGFLRR------EGRPPERAILISRLIDRPLRPLFPNWWRKDIQIIATTLSMDEEVPP 124
Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185
A+TG+ +A+ +AA+ G++ I++ Y E
Sbjct: 125 DVLAVTGSSIAVIQAGIPFYG-------------PMAAVRVGLIGDDFIINPTYREVENG 171
Query: 186 DVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
D+D + G +V V+ A T + ++ + + DLI Q D++
Sbjct: 172 DLDLVVAGSPDG-VVMVEAGA--NTLPEQDIIEAIDFGYEAVRDLIGAQYDIMEE 223
>gi|299142521|ref|ZP_07035652.1| polyribonucleotide nucleotidyltransferase [Prevotella oris C735]
gi|298575956|gb|EFI47831.1| polyribonucleotide nucleotidyltransferase [Prevotella oris C735]
Length = 748
Score = 137 bits (344), Expect = 2e-30, Method: Composition-based stats.
Identities = 47/243 (19%), Positives = 84/243 (34%), Gaps = 18/243 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHG 57
RL GR+ +R I GS + + G+T L+T T L+EK+ + +
Sbjct: 315 RLDGRKTTDIRPIWCEVSPLPMPHGSAIFQRGETMSLSTCTLGTKLDEKMVDDVLEKSYM 374
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P STG + V R+ G R L+ + + +
Sbjct: 375 RFLLHYNFPPFSTGEAKAQRGVGRREIGHGHL----AWRGLKGQIPEDY--PYTVRLVSQ 428
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+++++G + A + +AL D M+ + + + G + D+
Sbjct: 429 ILESNGSSSMATVCAGTLALMDAGVPMKKPVSGIAMGLIKN-------PGEDKYAILSDI 481
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T G + Q + S + L AK ++ +
Sbjct: 482 LGDEDHLGDMDFKTTGTRDG-LTATQMDIKCDGLSFEILEQALMQAKAGREHILNCMLET 540
Query: 238 ISN 240
IS
Sbjct: 541 ISE 543
Score = 102 bits (253), Expect = 5e-20, Method: Composition-based stats.
Identities = 38/241 (15%), Positives = 78/241 (32%), Gaps = 26/241 (10%)
Query: 3 LSGRQENQMREISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
GR I++ V+K A+G+ +++ G+T LL T +
Sbjct: 2 PDGRT------ITIETGKVAKQADGAAVLRMGNTVLLATVCAAKDAVPGTDFMPLQVDYR 55
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
E G+ R++ RALR + + + +
Sbjct: 56 EQYSAAGRFP--GGFTKREGKASDNEILTSRLVDRALRPLFPSNYHAEVYVQVMLLSADG 113
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
A A A+ + ++ + + G ++D + +
Sbjct: 114 VDQPDALAGFAASAAMAC-------------SDIPFEYAISEVRVARINGEYVIDPTFQQ 160
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
+ D+D T +I+ V+ E S+ L A + I + +LQ++ +S E
Sbjct: 161 MADADMDLMVAATKD-NIMMVE--GEMKEVSEQDLIGALKAAAEAIKPMCELQEE-LSKE 216
Query: 242 V 242
+
Sbjct: 217 L 217
>gi|182417579|ref|ZP_02948904.1| polyribonucleotide nucleotidyltransferase [Clostridium butyricum
5521]
gi|237668128|ref|ZP_04528112.1| polyribonucleotide nucleotidyltransferase [Clostridium butyricum E4
str. BoNT E BL5262]
gi|182378592|gb|EDT76120.1| polyribonucleotide nucleotidyltransferase [Clostridium butyricum
5521]
gi|237656476|gb|EEP54032.1| polyribonucleotide nucleotidyltransferase [Clostridium butyricum E4
str. BoNT E BL5262]
Length = 701
Score = 137 bits (344), Expect = 2e-30, Method: Composition-based stats.
Identities = 46/243 (18%), Positives = 85/243 (34%), Gaps = 16/243 (6%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R GR +++R + + G+ L G T ++T ATL E ++ I T+
Sbjct: 312 RPDGRAFDEVRPLGCEVGILPRTHGTGLFTRGLTQVMTVATLGSISEIQILDGIDETQSK 371
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y S G R+ G RAL ++ I + +
Sbjct: 372 RYMHHYNFPGYSVGEVKPLRGPGRREIGHGAL----AERALEPLIPSEEEFPYTIRLVSE 427
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
V+ ++G T A++ G+ +AL D ++ + + + + I D+
Sbjct: 428 VLSSNGSTSQASVCGSTLALLDAGVPIKRPAAGIAMGLITSED-------LSQEQVITDI 480
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T G I +Q + FS + + A+ +I +
Sbjct: 481 QGIEDFFGDMDFKVAGTTEG-ITSIQVDTKLQGFSFNVVENAIRDARKARLKIIDKINEC 539
Query: 238 ISN 240
+
Sbjct: 540 MPE 542
Score = 84.5 bits (207), Expect = 1e-14, Method: Composition-based stats.
Identities = 35/234 (14%), Positives = 71/234 (30%), Gaps = 27/234 (11%)
Query: 12 REISLTRRVSKYAEGSCLVK-FGDTHLLTTATLEEKVPMWIRNTK----HGWITAEYGML 66
RE+ + + +GDT ++T E+ I + G +
Sbjct: 12 RELKVEFGKVGMLSNAATFTSYGDTVIMTNVNASEEPREGIDFFPLSVEYEERLYAVGKI 71
Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
P R GR ++ R + R +R + Q++ ++ D
Sbjct: 72 PGGFIKR------EGRPSEKAILNGRAVDRTIRPLFPKGYRNDVQVVTTVVSVEKDNIPE 125
Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
AI A +AL S VAA+ G++ G + + D
Sbjct: 126 ILAINAASLALC-------------LSSIPYTIPVAAVQVGLIDGKLVTNPDSKGREESI 172
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
+ T ++ ++ +D + D +I Q++ ++
Sbjct: 173 LHLTVCATKE-RVMMIEAGGNE--IPEDKMIEAIEYGFDECQKIISFQEEAMAK 223
>gi|15895084|ref|NP_348433.1| polynucleotide phosphorylase/polyadenylase [Clostridium
acetobutylicum ATCC 824]
gi|81530281|sp|Q97I45|PNP_CLOAB RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|15024781|gb|AAK79773.1|AE007689_11 Polyribonucleotide nucleotidyltransferase [Clostridium
acetobutylicum ATCC 824]
gi|325509222|gb|ADZ20858.1| polynucleotide phosphorylase/polyadenylase [Clostridium
acetobutylicum EA 2018]
Length = 703
Score = 136 bits (343), Expect = 2e-30, Method: Composition-based stats.
Identities = 46/243 (18%), Positives = 89/243 (36%), Gaps = 16/243 (6%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHG 57
R GR+ +++R IS + GS L G T ++T T + +V + +
Sbjct: 312 RPDGRRFDEIRPISCDVDLLPRTHGSGLFTRGLTQVMTVTTLGPIGDAQVIDGLGVEESK 371
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P STG + R+ G +AL ++ I + +
Sbjct: 372 RYMHHYNFPPYSTGEVKPLRGPNRREIGHGAL----AEKALVPLIPSEEEFPYTIRLVSE 427
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
V+ ++G T A++ G+ +AL D ++ + + + + I D+
Sbjct: 428 VLSSNGSTSQASVCGSTLALMDAGVPIKRPAAGIAMGLITSED-------LSKEAVITDI 480
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T+ G I +Q + S+ +N A+ +++
Sbjct: 481 QGLEDFFGDMDFKVAGTEKG-ITAIQVDTKIHGLSKYCIKTAINDARKARLFILEKMVAC 539
Query: 238 ISN 240
I+
Sbjct: 540 INE 542
Score = 94.9 bits (234), Expect = 9e-18, Method: Composition-based stats.
Identities = 38/234 (16%), Positives = 76/234 (32%), Gaps = 27/234 (11%)
Query: 12 REISLTRRVSKYAEGSCLV-KFGDTHLLTTATLEEKVPMWIRNTK----HGWITAEYGML 66
R++ + + + +GDT ++ EK I + G +
Sbjct: 12 RKLKVECGKTGMLSNCAMFISYGDTVVMVNVNASEKPREGIDFFPLSIEYEERQYSVGKI 71
Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
P R GR +S R I R LR + Q++ ++ D
Sbjct: 72 PGGFVKR------EGRPSEKSILHARAIDRPLRPLFPKGYRNDVQVVCTVMSVEQDNLPE 125
Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
A+ GA +AL VA +S G + G +++ E
Sbjct: 126 ILAMNGASMALC-------------LSDIPFTTPVATVSVGCIDGKFVLNPTLEEREKSS 172
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
+D T+ ++ ++ A+ +D A ++ + D++ Q+ +
Sbjct: 173 LDLTVCATNE-RVMMLEAGADE--IPEDLMIAAIDFGFNACQDIVAFQEKAMKE 223
>gi|37522718|ref|NP_926095.1| polynucleotide phosphorylase/polyadenylase [Gloeobacter violaceus
PCC 7421]
gi|81709200|sp|Q7NGM0|PNP_GLOVI RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|35213720|dbj|BAC91090.1| polyribonucleotide nucleotidyltransferase [Gloeobacter violaceus
PCC 7421]
Length = 713
Score = 136 bits (343), Expect = 2e-30, Method: Composition-based stats.
Identities = 43/241 (17%), Positives = 82/241 (34%), Gaps = 18/241 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +++R IS RV G L G T +L+ TL + + +
Sbjct: 324 RVDGRSLDEVRPISSAVRVIPRVHGCGLFTRGTTQVLSVVTLGTASDAQELDDLHPDDSK 383
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y S G V R+ G RA+ ++ I + +
Sbjct: 384 RYMHHYNFPGFSVGEVKPLRGVGRREVGHGAL----AERAIVPILPEHEQFPYVIRVVSE 439
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
V+ ++G T ++ + +AL D + + + + + +G + D+
Sbjct: 440 VLSSNGSTSMGSVCASTLALMDAGVPIREPVSGVAMGLIKEGDEV---------RILTDI 490
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T G I +Q + + A + +K +++
Sbjct: 491 QGIEDFLGDMDFKVAGTRDG-ITALQMDIKIQGITLQILEAAIQQSKAGRLHILEKMLIA 549
Query: 238 I 238
I
Sbjct: 550 I 550
Score = 107 bits (267), Expect = 1e-21, Method: Composition-based stats.
Identities = 51/234 (21%), Positives = 88/234 (37%), Gaps = 27/234 (11%)
Query: 12 REISLTRRVSKY-AEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKHGWITAEYGML 66
REI L+ V A GS LV+ G+T +L TAT+ E + + + G +
Sbjct: 13 REIGLSTGVLAQLAGGSVLVQSGETAVLVTATMASKPREGIDFFPLLVDYEERLYAAGRI 72
Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
P S R GR ++ R+I R LR + + QI+ + +
Sbjct: 73 PGSFVRR------EGRPPEKAILAARLIDRPLRPLFPKGFINDVQIVATVLALDMNVPPD 126
Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
AI GA A G VAA G++ I++ Y E +
Sbjct: 127 ILAILGASTATMLAGI-------------PFDGPVAATRVGLMGDDFIINPTYKEIEEGE 173
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
+D T +G I+ V+ A ++ ++ + + ++ Q++ I +
Sbjct: 174 LDLVVAGTKNG-IMMVEAGA--NCLPEEDIIDAIDYGYEAVQAMLTAQEEFIRD 224
>gi|116512733|ref|YP_811640.1| polynucleotide phosphorylase/polyadenylase [Lactococcus lactis
subsp. cremoris SK11]
gi|123320193|sp|Q02WZ5|PNP_LACLS RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|116108387|gb|ABJ73527.1| Polyribonucleotide nucleotidyltransferase (polynucleotide
phosphorylase) [Lactococcus lactis subsp. cremoris SK11]
Length = 769
Score = 136 bits (343), Expect = 2e-30, Method: Composition-based stats.
Identities = 43/246 (17%), Positives = 85/246 (34%), Gaps = 20/246 (8%)
Query: 1 MRLSGRQENQMREISLTRRVSKY--AEGSCLVKFGDTHLLTTATL----EEKVPMWIRNT 54
+R GR+ +++R + + G+ L G T L+T TL E ++ + +
Sbjct: 316 IRPDGRKIDEIRPLDAEIDFTPRSITHGTGLFTRGQTQALSTLTLAPMNEAQIIDGLNDE 375
Query: 55 KHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIII 114
Y S G + A R+ G RAL V+ I +
Sbjct: 376 YKKRFMHHYNFPQYSVGETGRYGAPGRREIGHGALG----ERALEQVLPSLEEFPYAIRL 431
Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPI 174
+V++++G + A+I +AL ++ + + +
Sbjct: 432 VAEVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISD---------GTNYTVL 482
Query: 175 VDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
D+ ED D+D T G I +Q + + + + L AK ++ +
Sbjct: 483 TDIQGLEDHFGDMDFKVAGTREG-ITALQMDIKISGITPEILAEALAQAKTARFQILDVI 541
Query: 235 KDVISN 240
+ I+
Sbjct: 542 EATIAQ 547
Score = 109 bits (273), Expect = 3e-22, Method: Composition-based stats.
Identities = 40/232 (17%), Positives = 85/232 (36%), Gaps = 25/232 (10%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKV--PMWIRNTKHGWITAEYGMLPR 68
R +++ V+K A G+ +V++GDT +LT AT+ + + + G P
Sbjct: 13 RTLTVETGQVAKQANGAVVVRYGDTTVLTAATMGKMATGDFFPLQVNYEEKMYAAGKFPG 72
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
R R + R+I R +R + Q+I + R A
Sbjct: 73 GFNKR------EARPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDENASGRVA 126
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+ G+ +A G +A + + G +++ E + ++
Sbjct: 127 AMFGSSLA-------------LAISDIPFDGPIAGVEVAYIDGKYVINPTVAEKESSSLE 173
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
+ + I V+ A+ S++ L + + +LI+ Q ++++
Sbjct: 174 LSVAGNIN-AINMVESGAKE--LSEEVMLGALLAGHNAVKELIEFQNEIVAK 222
>gi|259507481|ref|ZP_05750381.1| guanosine pentaphosphate synthetase/polyribonucleotide
nucleotidyltransferase [Corynebacterium efficiens
YS-314]
gi|259164969|gb|EEW49523.1| guanosine pentaphosphate synthetase/polyribonucleotide
nucleotidyltransferase [Corynebacterium efficiens
YS-314]
Length = 766
Score = 136 bits (343), Expect = 2e-30, Method: Composition-based stats.
Identities = 43/242 (17%), Positives = 86/242 (35%), Gaps = 14/242 (5%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKH 56
R+ GR + +R++ + + A GS L + G+T +L TL+ E+ +
Sbjct: 380 FRIDGRGVSDIRDLGVEVELIPRAHGSSLFERGETQILGVTTLDMLKMEQHIDSLAPVDT 439
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P STG + + R+ G RA+ V+ I
Sbjct: 440 KRYMHHYNFPPYSTGETGRVGSPKRREIGHGAL----AERAVLPVIPSREDFPYAIRQVS 495
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+ + ++G T ++ + ++L++ ++ + V G + D
Sbjct: 496 EALGSNGSTSMGSVCASTLSLYNAGVPLKAPVAGIAMGLVSDE-----VDGKTEYVALTD 550
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED+ D+D T I +Q + L A+D +++ +
Sbjct: 551 ILGAEDAFGDMDFKVAGTAEF-ITALQLDTKLDGIPSKVLADALEQARDARLAILETMAE 609
Query: 237 VI 238
VI
Sbjct: 610 VI 611
Score = 70.3 bits (170), Expect = 2e-10, Method: Composition-based stats.
Identities = 38/254 (14%), Positives = 70/254 (27%), Gaps = 33/254 (12%)
Query: 12 REISLTRR-VSKYAEGSCLVKFG-DTHLLTTATLEEKVPMWIRNT----KHGWITAEYGM 65
R I +++ A+G+ +T LL T T + + G
Sbjct: 43 RTIRFETGQLARQADGAVTTYLDDETMLLATTTASNQPREGLDFFPLTVDVEERMYAAGR 102
Query: 66 LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125
+P S R GR + R+I R LR Q+II + +
Sbjct: 103 IPGSFFRR------EGRPSTEAILACRLIDRPLRPTFVKGLRNEVQVIITVMSVSPEDSY 156
Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG-------YPIVDLD 178
AI GA A + +++ + + + +
Sbjct: 157 DVVAINGASAATRISGLPVSGAVGGVRMALIADENHPEGQWVAFPTAEQQKASVFELVVA 216
Query: 179 YGEDSTIDVDANFVMTDSGHIVEVQGSAERATF----------SQDHFFAMLNLAKDRIA 228
+ F ++ V+ A ++ L AK I
Sbjct: 217 GRLVERKRGNKTF---SDVAVMMVEAGASENVVERIKEGAPAPTEKTVAEGLEAAKPFID 273
Query: 229 DLIKLQKDVISNEV 242
L + Q + ++ V
Sbjct: 274 LLCRAQ-EGLAQRV 286
>gi|317967932|ref|ZP_07969322.1| polynucleotide phosphorylase/polyadenylase [Synechococcus sp.
CB0205]
Length = 680
Score = 136 bits (343), Expect = 2e-30, Method: Composition-based stats.
Identities = 45/242 (18%), Positives = 86/242 (35%), Gaps = 19/242 (7%)
Query: 2 RLSGRQENQMREISLTRRVSK-YAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
R+ GR +++R IS V GS L + G T +L+ ATL + + + +
Sbjct: 293 RVDGRNLDEVRPISAAAGVLPKRVHGSGLFQRGMTQVLSCATLGTPSDAQEMDDLNPSNE 352
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P S G + R+ G RAL V+ + +
Sbjct: 353 KTYLHHYNFPPYSVGETRPMRSPGRREIGHGAL----AERALIPVLPSKESFPYVLRVVS 408
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+ + ++G T ++ G+ +AL D ++ + + + +G + D
Sbjct: 409 ECLSSNGSTSMGSVCGSTLALMDAGVPLKAPVSGAAMGLIKEGSEV---------RILTD 459
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T+ G I +Q + +N A+ +++
Sbjct: 460 IQGIEDFLGDMDFKVAGTEKG-ITALQMDMKITGLEVKTVAEAINQARPARLHILEKMLA 518
Query: 237 VI 238
I
Sbjct: 519 AI 520
Score = 86.1 bits (211), Expect = 4e-15, Method: Composition-based stats.
Identities = 44/215 (20%), Positives = 80/215 (37%), Gaps = 25/215 (11%)
Query: 29 LVKFGDTHLLTTAT---LEEKVPMWIRNTKHGWITAEYGMLPRSTGNRVKREAVSGRQGG 85
+V+ GDT +L TAT E + + G +P S R R
Sbjct: 1 MVECGDTSVLVTATRSGGREGIDFLPLICDYEERLYAAGRIPGSFMRR------ESRPPE 54
Query: 86 RSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHME 145
R+ I R+I R +R + Q++ C + A+TGA +A
Sbjct: 55 RATLIARLIDRPMRPLFPSWLRDDMQVVATCMSLDERVPPDVLAVTGASLATLLAKI--- 111
Query: 146 DCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGS 205
G +AA+ G+L I++ Y E ++D T G ++ V+
Sbjct: 112 ----------PFNGPMAAVRVGLLGDDFILNPSYREIERSELDLVVAGTPQG-VIMVEAG 160
Query: 206 AERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
A + + ++ + + +LIK+Q+ ++
Sbjct: 161 ANQ--LPEQDVIEAIDFGYEAVCELIKVQQTLLKE 193
>gi|210632893|ref|ZP_03297592.1| hypothetical protein COLSTE_01499 [Collinsella stercoris DSM 13279]
gi|210159361|gb|EEA90332.1| hypothetical protein COLSTE_01499 [Collinsella stercoris DSM 13279]
Length = 743
Score = 136 bits (343), Expect = 2e-30, Method: Composition-based stats.
Identities = 47/241 (19%), Positives = 89/241 (36%), Gaps = 18/241 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR N++R I + GS L + G T +L+ +L E + I +
Sbjct: 319 RVDGRAANEIRPIMVKGDYLPLVHGSGLFQRGQTQVLSVLSLGMLNEGQRLDTIEPVEGK 378
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P TG + + R+ G RAL V+ I + +
Sbjct: 379 RYMHHYNFPPYCTGETGRMGSPKRREIGHGNL----AERALIPVLPDENEFPYAIRVVSE 434
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
V++++G + A+ G+ +AL D ++ + + + + + +
Sbjct: 435 VMESNGSSSMASTCGSCLALMDGGVPIKRPVSGIAMGLIQEEGKTVVLSD---------I 485
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T+ G I +Q + + D L AK+ A ++ +V
Sbjct: 486 QGLEDFLGDMDFKVTGTERG-ITALQMDNKATGLTFDILRTALEQAKEGRAFILDKMLEV 544
Query: 238 I 238
+
Sbjct: 545 V 545
Score = 92.6 bits (228), Expect = 4e-17, Method: Composition-based stats.
Identities = 45/229 (19%), Positives = 75/229 (32%), Gaps = 24/229 (10%)
Query: 16 LTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKV---PMWIRNTKHGWITAEYGMLPRSTG 71
L ++K A G+ LVK GD+ +LTT + ++ + G +P
Sbjct: 17 LEAGELAKQATGAALVKQGDSTVLTTVVVSKERKNYDFFPLTVDFNEKMYAAGRIPGGYL 76
Query: 72 NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAIT 131
R GR ++ RMI R +R Q++ V +
Sbjct: 77 KR------EGRPSEKATLTARMIDRPIRPSFPDGFRNEVQVVATSLVADQKNPVDVICVM 130
Query: 132 GAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANF 191
GA +A+ E + I G IV+ Y E D+D
Sbjct: 131 GASLAMTLGGVPFEGPLACVR-----------IGRDKETGEFIVNPTYEERDASDLDLEL 179
Query: 192 VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
T I V+ AE S++ A + ++ I Q + ++
Sbjct: 180 AGTRDF-ISMVEAGAEE--VSEEDMLAAMQFGQEAIGAFCDAQLEFVAE 225
>gi|116072761|ref|ZP_01470027.1| RNA binding S1 [Synechococcus sp. BL107]
gi|116064648|gb|EAU70408.1| RNA binding S1 [Synechococcus sp. BL107]
Length = 721
Score = 136 bits (343), Expect = 2e-30, Method: Composition-based stats.
Identities = 44/242 (18%), Positives = 89/242 (36%), Gaps = 19/242 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKY-AEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
R+ GR +++R+IS V GS L + G T +L+TATL + + +
Sbjct: 323 RVDGRGLDEVRQISAMAGVLPRRVHGSGLFQRGLTQVLSTATLGTPSDAQEMDDLHPNTE 382
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P S G + R+ G RA+ V+ + +
Sbjct: 383 KLYLHHYNFPPYSVGETRPMRSPGRREIGHGAL----AERAILPVLPEKDTFPYVVRVVS 438
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V+ ++G T ++ G+ ++L D ++ + + + +G + D
Sbjct: 439 EVLSSNGSTSMGSVCGSTLSLMDAGVPLKAPVSGAAMGLIKEGKDI---------KILTD 489
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D ++ G I +Q + +N A+ +++ +
Sbjct: 490 IQGIEDFLGDMDFKVAGSEKG-ITALQMDMKITGLPVKVVADAVNQARPARLHILEKMLE 548
Query: 237 VI 238
I
Sbjct: 549 AI 550
Score = 116 bits (289), Expect = 4e-24, Method: Composition-based stats.
Identities = 53/235 (22%), Positives = 88/235 (37%), Gaps = 26/235 (11%)
Query: 10 QMREISLTRR-VSKYAEGSCLVKFGDTHLLTTAT---LEEKVPMWIRNTKHGWITAEYGM 65
REI LT + A GS LV+ GDT +L TAT + + + G
Sbjct: 11 DGREIRLTTGRFAPQAGGSVLVECGDTAVLVTATRSSGRDGIDFLPLICDYEERLYAAGR 70
Query: 66 LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125
+P S R R R+ R+I R +R + Q++ C +
Sbjct: 71 IPGSYMRR------EARPPERATLTCRLIDRPMRPLFPSWMRDDLQVVATCLSLDERVPA 124
Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185
A+TGA +A G +AA+ G+L +++ Y E
Sbjct: 125 DVLAVTGASIATLLAGI-------------PFNGPMAAVRVGLLGDDFVLNPSYREIERG 171
Query: 186 DVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
D+D T G +V V+ A + + ++ + I +LIK Q+ ++ +
Sbjct: 172 DLDLVVAGTADG-VVMVEAGANQ--LPEQDVIEAIDFGYEAIQELIKAQETLLKD 223
>gi|289643638|ref|ZP_06475751.1| guanosine pentaphosphate synthetase I/polyribonucleotide
nucleotidyltransferase [Frankia symbiont of Datisca
glomerata]
gi|289506529|gb|EFD27515.1| guanosine pentaphosphate synthetase I/polyribonucleotide
nucleotidyltransferase [Frankia symbiont of Datisca
glomerata]
Length = 733
Score = 136 bits (343), Expect = 2e-30, Method: Composition-based stats.
Identities = 39/242 (16%), Positives = 81/242 (33%), Gaps = 18/242 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKH 56
+R+ GR ++RE++ GS L + G+T +L TL E+ + +
Sbjct: 341 VRIDGRGVTEIRELAAEVDFIPRVHGSALFERGETQILGVTTLAMLRMEQTVDTLNPDRT 400
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P STG + + R+ G RAL V+ I
Sbjct: 401 KRYMHNYNFPPYSTGETGRVGSPKRREIGHGAL----AERALLPVLPSREEFPYAIRQVS 456
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+ + ++G T ++ + ++L + ++ + + +G
Sbjct: 457 EALGSNGSTSMGSVCASTLSLLNAGVPLKAAVAGIAMGLIREGDQFVTLTD--------- 507
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED+ D+D T + +Q + L A+ ++ + +
Sbjct: 508 ILGAEDAYGDMDFKVAGTREF-VTALQLDTKLDGIPATVLAGALQQARAARLAILDVMAE 566
Query: 237 VI 238
I
Sbjct: 567 AI 568
Score = 92.6 bits (228), Expect = 4e-17, Method: Composition-based stats.
Identities = 45/244 (18%), Positives = 72/244 (29%), Gaps = 39/244 (15%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT----KHGWITAEYGML 66
R + +++ A GS + GDT +L+ T+ ++ + G +
Sbjct: 23 RTVRFETGRLARQAAGSAVAYLGDTMVLSATTVSKQPKEQLDFFPLTVDVEERMYAAGRI 82
Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
P S R GR + R+I R LR QI+ + D
Sbjct: 83 PGSFFRR------EGRPSEDAILTCRLIDRPLRPSFVKGLRNEIQIVATVLALDPDTLYD 136
Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
AI A + G + A G + G I + E
Sbjct: 137 VVAINAASASTTLAG-------------LPFSGPIGATRVGYVDGTWIAFPTHAELERAT 183
Query: 187 VDANFVM-----TDSGHIVEVQGSAERATF----------SQDHFFAMLNLAKDRIADLI 231
D I+ V+ A T ++D A L AK I +L
Sbjct: 184 FDMVVAGRVLDDGSDVAIMMVEAEATAHTIPLLAAGSPAPTEDVVAAGLEAAKPAIRELC 243
Query: 232 KLQK 235
+ Q+
Sbjct: 244 RAQR 247
>gi|125624816|ref|YP_001033299.1| polynucleotide phosphorylase/polyadenylase [Lactococcus lactis
subsp. cremoris MG1363]
gi|187610279|sp|A2RMS5|PNP_LACLM RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|124493624|emb|CAL98611.1| polyribonucleotide nucleotidyltransferase [Lactococcus lactis
subsp. cremoris MG1363]
gi|300071615|gb|ADJ61015.1| polynucleotide phosphorylase/polyadenylase [Lactococcus lactis
subsp. cremoris NZ9000]
Length = 766
Score = 136 bits (343), Expect = 2e-30, Method: Composition-based stats.
Identities = 43/246 (17%), Positives = 85/246 (34%), Gaps = 20/246 (8%)
Query: 1 MRLSGRQENQMREISLTRRVSKY--AEGSCLVKFGDTHLLTTATL----EEKVPMWIRNT 54
+R GR+ +++R + + G+ L G T L+T TL E ++ + +
Sbjct: 316 IRPDGRKIDEIRPLDAEIDFTPRSITHGTGLFTRGQTQALSTLTLAPMNEAQIIDGLNDE 375
Query: 55 KHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIII 114
Y S G + A R+ G RAL V+ I +
Sbjct: 376 YKKRFMHHYNFPQYSVGETGRYGAPGRREIGHGALG----ERALEQVLPSLEEFPYAIRL 431
Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPI 174
+V++++G + A+I +AL ++ + + +
Sbjct: 432 VAEVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISD---------GTNYTVL 482
Query: 175 VDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
D+ ED D+D T G I +Q + + + + L AK ++ +
Sbjct: 483 TDIQGLEDHFGDMDFKVAGTREG-ITALQMDIKISGITPEILAEALAQAKTARFQILDVI 541
Query: 235 KDVISN 240
+ I+
Sbjct: 542 EATIAQ 547
Score = 109 bits (273), Expect = 3e-22, Method: Composition-based stats.
Identities = 41/232 (17%), Positives = 84/232 (36%), Gaps = 25/232 (10%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKV--PMWIRNTKHGWITAEYGMLPR 68
R +++ V+K A G+ +V++GDT +LT AT+ + + + G P
Sbjct: 13 RTLTVETGQVAKQANGAVVVRYGDTTVLTAATMGKMATGDFFPLQVNYEEKMYAAGKFPG 72
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
R R + R+I R +R + Q+I + R A
Sbjct: 73 GFNKR------EARPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDENASGRVA 126
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+ G+ +A G +A + + G I++ E ++
Sbjct: 127 AMFGSSLA-------------LAISDIPFDGPIAGVEVAYIDGKYIINPTVAEKEASSLE 173
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
+ + I V+ A+ S++ L + + +LI+ Q ++++
Sbjct: 174 LSVAGNIN-AINMVESGAKE--LSEEVMLGALLAGHNAVKELIEFQNEIVAK 222
>gi|189184292|ref|YP_001938077.1| ribonuclease PH [Orientia tsutsugamushi str. Ikeda]
gi|189181063|dbj|BAG40843.1| ribonuclease PH [Orientia tsutsugamushi str. Ikeda]
Length = 251
Score = 136 bits (343), Expect = 2e-30, Method: Composition-based stats.
Identities = 114/242 (47%), Positives = 158/242 (65%), Gaps = 7/242 (2%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKH-GWI 59
MRL R++++MR IS+ ++GSCL+K G+TH++ +AT+EE +P++++N K GW+
Sbjct: 1 MRLCSRKDSEMRPISIELGTMLNSKGSCLIKIGNTHVICSATVEESLPLFLKNKKQGGWV 60
Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119
TAEY MLP S+ RVKRE + G+ GR+QEIQR+I RA+R+ VDL LG RQI+IDCDVI
Sbjct: 61 TAEYSMLPGSSLQRVKREGIQGK-SGRTQEIQRLISRAMRAAVDLKLLGERQILIDCDVI 119
Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179
ADGGTR A+ITG +VA+ + + N + VAAISCG+ G IVDLDY
Sbjct: 120 NADGGTRAASITGGYVAMCLAVNKLMQEKNLAV--YPILYQVAAISCGISNGRVIVDLDY 177
Query: 180 GEDSTIDVDANFVMTDSG---HIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
EDS +VDANFV +G IVE+Q +AE+ F + ML LA+ I + +Q
Sbjct: 178 QEDSCAEVDANFVFRRAGTIIEIVEIQVAAEKKAFVDEQVIQMLKLAQKAINHIFDIQNQ 237
Query: 237 VI 238
+
Sbjct: 238 SL 239
>gi|153939959|ref|YP_001391710.1| polynucleotide phosphorylase/polyadenylase [Clostridium botulinum F
str. Langeland]
gi|187610258|sp|A7GG00|PNP_CLOBL RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|152935855|gb|ABS41353.1| polyribonucleotide nucleotidyltransferase [Clostridium botulinum F
str. Langeland]
Length = 702
Score = 136 bits (343), Expect = 2e-30, Method: Composition-based stats.
Identities = 46/243 (18%), Positives = 83/243 (34%), Gaps = 16/243 (6%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHG 57
R GR +++R I + G+ L G T ++T AT + ++ I +
Sbjct: 312 RPDGRAFDEVRPIGCEVGILPRTHGTGLFTRGLTQVMTVATLGALGDVQILDGIAEEESK 371
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y S G R+ G RAL ++ I + +
Sbjct: 372 RYMHHYNFPSYSVGEVRPLRGPGRREIGHGAL----AERALEPLIPSQEEFPYTIRLVSE 427
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
V+ ++G T A++ G+ +AL D ++ + + + + I D+
Sbjct: 428 VLSSNGSTSQASVCGSTLALLDAGVPIKRPAAGIAMGLITSDD-------LEREKVITDI 480
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T+ G I +Q + S L AK ++ K+
Sbjct: 481 QGIEDFFGDMDFKVAGTEKG-ITSIQFDTKIKGLSNSCVKDALEGAKKARLHILGKIKEC 539
Query: 238 ISN 240
I
Sbjct: 540 IPE 542
Score = 86.8 bits (213), Expect = 3e-15, Method: Composition-based stats.
Identities = 38/236 (16%), Positives = 81/236 (34%), Gaps = 31/236 (13%)
Query: 12 REISL---TRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT----KHGWITAEYG 64
R++ + + A + + +GDT ++ A ++ I + G
Sbjct: 12 RKMKVDFGKTGMLSNA--AIFMSYGDTVVMINANASKEPREGIDFFPLSVDYEERLYSVG 69
Query: 65 MLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGG 124
+P R G+ +S R I R LR + QI+ ++ D
Sbjct: 70 KIPGGFIKR------EGKPSDKSILHARSIDRPLRPLFPNGYRNDVQIVNTVLSVEQDNL 123
Query: 125 TRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDST 184
AI G+ +AL S VAA+S G++ G I++ +
Sbjct: 124 PEILAINGSSLALC-------------LSSIPFTTPVAAVSVGLVDGEFIINPTVAQREN 170
Query: 185 IDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
+D T I+ V+ + ++ + + + +++ Q++ ++
Sbjct: 171 TILDLTVCATKE-RIMMVEAGGQE--IDEETMYNAILFGFEECKNIVAFQEEAVAK 223
>gi|297191697|ref|ZP_06909095.1| polynucleotide phosphorylase/polyadenylase [Streptomyces
pristinaespiralis ATCC 25486]
gi|197721446|gb|EDY65354.1| polynucleotide phosphorylase/polyadenylase [Streptomyces
pristinaespiralis ATCC 25486]
Length = 738
Score = 136 bits (343), Expect = 2e-30, Method: Composition-based stats.
Identities = 39/242 (16%), Positives = 82/242 (33%), Gaps = 14/242 (5%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
+R+ GR +R ++ GS L + G+T +L TL E+ +
Sbjct: 338 VRIDGRGITDIRTLAAEVEAIPRVHGSALFERGETQILGVTTLNMLRMEQQLDTLSPVTR 397
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P S G + + R+ G RA+ V+ I
Sbjct: 398 KRYMHNYNFPPYSVGETGRVGSPKRREIGHGAL----AERAIVPVLPTREEFPYAIRQVS 453
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+ + ++G T ++ + ++L + ++ + + + G + D
Sbjct: 454 EALGSNGSTSMGSVCASTMSLLNAGVPLKAPVAGIAMGLISEQID-----GETHYVALTD 508
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED+ D+D T + + +Q + A L A+D ++ + +
Sbjct: 509 ILGAEDAFGDMDFKVAGTKTF-VTALQLDTKLDGIPASVLAAALKQARDARLHILDVMNE 567
Query: 237 VI 238
I
Sbjct: 568 AI 569
Score = 83.7 bits (205), Expect = 2e-14, Method: Composition-based stats.
Identities = 44/243 (18%), Positives = 67/243 (27%), Gaps = 39/243 (16%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGD-THLLTTATLEEKVPMWIRNT----KHGWITAEYGM 65
R I ++K A GS + D T +L+ T +K + G
Sbjct: 20 RTIRFETGRLAKQAAGSAVAYLDDDTMVLSATTASKKPKDQLDFFPLTVDVEERMYAAGK 79
Query: 66 LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125
+P S R GR + R+I R LR QI+ + D
Sbjct: 80 IPGSFFRR------EGRPSEDAILTCRLIDRPLRPSFKKGLRNEIQIVETIMALNPDHLY 133
Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185
AI A + G + ++ G + + E
Sbjct: 134 DVVAINAASCSTQLAG-------------LPFSGPIGGTRVALIKGQWVAFPTHTELEDA 180
Query: 186 DVDANFVMT----DSGHIVEVQGSAERATF----------SQDHFFAMLNLAKDRIADLI 231
D I+ V+ A T +++ A L AK I L
Sbjct: 181 VFDMVVAGRVLEDGDVAIMMVEAEATEKTIELVKGGAEAPTEEVVAAGLEAAKPFIKVLC 240
Query: 232 KLQ 234
K Q
Sbjct: 241 KAQ 243
>gi|25028424|ref|NP_738478.1| polynucleotide phosphorylase/polyadenylase [Corynebacterium
efficiens YS-314]
gi|23493709|dbj|BAC18678.1| putative guanosine pentaphosphate synthetase and polyribonucleotide
nucleotidyltransferase [Corynebacterium efficiens
YS-314]
Length = 769
Score = 136 bits (343), Expect = 2e-30, Method: Composition-based stats.
Identities = 43/242 (17%), Positives = 86/242 (35%), Gaps = 14/242 (5%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKH 56
R+ GR + +R++ + + A GS L + G+T +L TL+ E+ +
Sbjct: 383 FRIDGRGVSDIRDLGVEVELIPRAHGSSLFERGETQILGVTTLDMLKMEQHIDSLAPVDT 442
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P STG + + R+ G RA+ V+ I
Sbjct: 443 KRYMHHYNFPPYSTGETGRVGSPKRREIGHGAL----AERAVLPVIPSREDFPYAIRQVS 498
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+ + ++G T ++ + ++L++ ++ + V G + D
Sbjct: 499 EALGSNGSTSMGSVCASTLSLYNAGVPLKAPVAGIAMGLVSDE-----VDGKTEYVALTD 553
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED+ D+D T I +Q + L A+D +++ +
Sbjct: 554 ILGAEDAFGDMDFKVAGTAEF-ITALQLDTKLDGIPSKVLADALEQARDARLAILETMAE 612
Query: 237 VI 238
VI
Sbjct: 613 VI 614
Score = 70.3 bits (170), Expect = 2e-10, Method: Composition-based stats.
Identities = 38/254 (14%), Positives = 70/254 (27%), Gaps = 33/254 (12%)
Query: 12 REISLTRR-VSKYAEGSCLVKFG-DTHLLTTATLEEKVPMWIRNT----KHGWITAEYGM 65
R I +++ A+G+ +T LL T T + + G
Sbjct: 46 RTIRFETGQLARQADGAVTTYLDDETMLLATTTASNQPREGLDFFPLTVDVEERMYAAGR 105
Query: 66 LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125
+P S R GR + R+I R LR Q+II + +
Sbjct: 106 IPGSFFRR------EGRPSTEAILACRLIDRPLRPTFVKGLRNEVQVIITVMSVSPEDSY 159
Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG-------YPIVDLD 178
AI GA A + +++ + + + +
Sbjct: 160 DVVAINGASAATRISGLPVSGAVGGVRMALIADENHPEGQWVAFPTAEQQKASVFELVVA 219
Query: 179 YGEDSTIDVDANFVMTDSGHIVEVQGSAERATF----------SQDHFFAMLNLAKDRIA 228
+ F ++ V+ A ++ L AK I
Sbjct: 220 GRLVERKRGNKTF---SDVAVMMVEAGASENVVERIKEGAPAPTEKTVAEGLEAAKPFID 276
Query: 229 DLIKLQKDVISNEV 242
L + Q + ++ V
Sbjct: 277 LLCRAQ-EGLAQRV 289
>gi|296127904|ref|YP_003635154.1| guanosine pentaphosphate synthetase I/polyribonucleotide
nucleotidyltransferase [Cellulomonas flavigena DSM
20109]
gi|296019719|gb|ADG72955.1| guanosine pentaphosphate synthetase I/polyribonucleotide
nucleotidyltransferase [Cellulomonas flavigena DSM
20109]
Length = 791
Score = 136 bits (343), Expect = 2e-30, Method: Composition-based stats.
Identities = 43/242 (17%), Positives = 79/242 (32%), Gaps = 14/242 (5%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
R+ GR +R +S V GS L + G+T +L TL E+ +
Sbjct: 377 FRIDGRGLRDIRTLSAEVEVLPRTHGSALFERGETQILGVTTLNMLRMEQQIDSLSPETR 436
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P STG + + R+ G RA+ V+ I
Sbjct: 437 KRYMHHYNFPPYSTGETGRVGSPKRREIGHGAL----AERAIVPVLPAREEFPYAIRQVS 492
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+ + ++G T ++ A ++L + + + V G + D
Sbjct: 493 EALGSNGSTSMGSVCAATLSLLNAGVPLRAPVAGIAMGLVSD-----TVDGETRYAALTD 547
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED+ D+D T + +Q + L AK+ ++ + +
Sbjct: 548 ILGAEDAFGDMDFKVAGTREF-VTAIQLDTKLDGIPASVLAGALTQAKEARLAILDVIAE 606
Query: 237 VI 238
I
Sbjct: 607 AI 608
Score = 67.2 bits (162), Expect = 2e-09, Method: Composition-based stats.
Identities = 42/241 (17%), Positives = 70/241 (29%), Gaps = 39/241 (16%)
Query: 12 REISLTRR-VSKYAEGSCLVKF-GDTHLLTTATLE----EKVPMWIRNTKHGWITAEYGM 65
R + ++K A GS + DT LL+ T E + G
Sbjct: 59 RTVRFETGRLAKQAAGSAVAYLDDDTMLLSATTAGKHPREAFDFFPLTVDVEERQYAAGK 118
Query: 66 LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125
+P + R GR + R+I R LR + Q+++ I D
Sbjct: 119 IPGAFFRR------EGRPSTDAILACRLIDRPLRPLFVKGLRNEVQVVVTVLSINPDDAY 172
Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185
AI A ++ G VAA ++ G + Y E
Sbjct: 173 DVLAINAASISTQ-------------LSGLPFSGPVAATRLALVDGQWVAFPRYSERERS 219
Query: 186 DVDANFVM---TDSGHIVEVQGSAERATF-----------SQDHFFAMLNLAKDRIADLI 231
D D I ++ A + +++ L +K I L+
Sbjct: 220 TFDIVVAGRVVGDDVAIAMIEADAPENAWNLIHGGGGTAPTEEVVAQGLEASKPFIKVLV 279
Query: 232 K 232
+
Sbjct: 280 E 280
>gi|218245144|ref|YP_002370515.1| polynucleotide phosphorylase/polyadenylase [Cyanothece sp. PCC
8801]
gi|257058170|ref|YP_003136058.1| polynucleotide phosphorylase/polyadenylase [Cyanothece sp. PCC
8802]
gi|226702645|sp|B7K339|PNP_CYAP8 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|218165622|gb|ACK64359.1| Polyribonucleotide nucleotidyltransferase [Cyanothece sp. PCC 8801]
gi|256588336|gb|ACU99222.1| Polyribonucleotide nucleotidyltransferase [Cyanothece sp. PCC 8802]
Length = 718
Score = 136 bits (343), Expect = 2e-30, Method: Composition-based stats.
Identities = 46/245 (18%), Positives = 88/245 (35%), Gaps = 20/245 (8%)
Query: 1 MRLSGRQENQMREISLTRRVSKY-AEGSCLVKFGDTHLLTTATLE-----EKVPMWIRNT 54
+R+ GR+ +++R IS + GS L G T +L+ ATL + + +
Sbjct: 323 VRVDGRKLDEVRPISSRVCLLPRRVHGSALFARGLTQVLSLATLGTPGDAQDLADDLHPE 382
Query: 55 KHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIII 114
Y P S G + R+ G RA+ ++ I +
Sbjct: 383 DEKRYLHHYNFPPFSVGETKPLRSPGRREIGHGAL----AERAITPILPPQEEFPYVIRV 438
Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPI 174
+V+ ++G T ++ G+ +AL D + + + + +G +
Sbjct: 439 VSEVLSSNGSTSMGSVCGSTLALMDAGVPITKPVSGAAMGLIKEGDEV---------RIL 489
Query: 175 VDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
D+ ED D+D TDSG I +Q + S + + A ++
Sbjct: 490 TDIQGIEDFLGDMDFKVAGTDSG-ITALQMDMKITGLSMEIVAKAIEQALPARLHILDKM 548
Query: 235 KDVIS 239
+ +S
Sbjct: 549 METLS 553
Score = 104 bits (260), Expect = 8e-21, Method: Composition-based stats.
Identities = 52/234 (22%), Positives = 89/234 (38%), Gaps = 26/234 (11%)
Query: 10 QMREISLTRRV-SKYAEGSCLVKFGDTHLLTT---ATLEEKVPMWIRNTKHGWITAEYGM 65
R+I L + + A GS L++ GDT +L T AT E + + G
Sbjct: 11 DGRDIRLKLGLLAPQAGGSVLIQSGDTAVLVTATRATGREGIDFLPLTVDYEERLYAAGR 70
Query: 66 LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125
+P R GR ++ I R+I R LR + QII + +
Sbjct: 71 IPGGFLRR------EGRPPEKAILISRLIDRPLRPLFPQWLRDDIQIIATTLSMDEEVPP 124
Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185
A+TGA +A+ +AA+ G++ I++ Y E
Sbjct: 125 DVLAVTGASIAVIAARIPFFG-------------PMAAVRVGLIGDDFIINPTYREIEIG 171
Query: 186 DVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
D+D + G +V V+ A + + ++ + + DLI+ Q+DV+
Sbjct: 172 DLDLVVAGSPDG-VVMVEAGANQ--LPEQDIIEAIDFGYEAVRDLIQAQRDVME 222
>gi|20093819|ref|NP_613666.1| exosome complex exonuclease Rrp41 [Methanopyrus kandleri AV19]
gi|29336819|sp|Q8TYC1|ECX1_METKA RecName: Full=Probable exosome complex exonuclease 1
gi|19886742|gb|AAM01596.1| Predicted exosome subunit, RNase PH [Methanopyrus kandleri AV19]
Length = 239
Score = 136 bits (343), Expect = 2e-30, Method: Composition-based stats.
Identities = 62/243 (25%), Positives = 97/243 (39%), Gaps = 23/243 (9%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEK-VPMWIRNTKHGWI 59
+RL GR+ ++MR + + V K A+GS ++ G ++ + P + +
Sbjct: 14 LRLDGRKPDEMRPLKIQAGVLKRADGSAYLELGANKIVAAVYGPRELHPRHKQKPDRAVV 73
Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119
Y M P S R + RS EI ++ AL + I I +V+
Sbjct: 74 RFRYNMAPFSVDERKRPG-----PDRRSIEISKLSKEALEPAIFTEYYPRTAIDIFVEVL 128
Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179
QAD GTR A I+ A VAL D M D VAA + G + G ++D Y
Sbjct: 129 QADAGTRCAGISAASVALADAGIEMRDL-------------VAACAAGKVEGKVVLDPMY 175
Query: 180 GEDSTIDVDANF-VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
ED + D +M G I +Q + + F + LAK + K Q+ +
Sbjct: 176 YEDGYGEADVPLAMMPKEGKITLLQMDGD---MTPGEFKQAVKLAKKGCKIVYKEQRRAL 232
Query: 239 SNE 241
+
Sbjct: 233 KEK 235
>gi|257875805|ref|ZP_05655458.1| ribonuclease PH/Ham1 [Enterococcus casseliflavus EC20]
gi|257809971|gb|EEV38791.1| ribonuclease PH/Ham1 [Enterococcus casseliflavus EC20]
Length = 210
Score = 136 bits (343), Expect = 2e-30, Method: Composition-based stats.
Identities = 109/212 (51%), Positives = 148/212 (69%), Gaps = 3/212 (1%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR GR+E +R + + V K+ EGS ++ FGDT ++ +AT+EE+VP ++R+T GW+T
Sbjct: 1 MRHDGRKETMLRPVKIQTNVYKHPEGSVVISFGDTTVICSATIEERVPPFLRDTGKGWVT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEY MLPR+T R +RE+ G+ GR+ EIQR+I R+LR+VVDL LG R I++DCDV+Q
Sbjct: 61 AEYSMLPRATNTRNRRESAKGKLSGRTMEIQRLIARSLRAVVDLEKLGERSIVVDCDVVQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIV-DLDY 179
ADGGTRTA+ITGA+VAL + + +K +K H+AAIS G+L V DLDY
Sbjct: 121 ADGGTRTASITGAFVALRLAIDTL--LRDKALTEDPIKEHLAAISVGILPDGTCVTDLDY 178
Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATF 211
EDS+ VD N VMT+SG VE+QG+ E ATF
Sbjct: 179 QEDSSAAVDMNLVMTESGRFVELQGTGEEATF 210
>gi|319950925|ref|ZP_08024802.1| polynucleotide phosphorylase/polyadenylase [Dietzia cinnamea P4]
gi|319435418|gb|EFV90661.1| polynucleotide phosphorylase/polyadenylase [Dietzia cinnamea P4]
Length = 753
Score = 136 bits (343), Expect = 2e-30, Method: Composition-based stats.
Identities = 41/244 (16%), Positives = 82/244 (33%), Gaps = 14/244 (5%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKH 56
R+ GR +R +S V A GS L + G+T ++ TL+ + +
Sbjct: 355 FRIDGRGVRDIRALSAEVEVIPRAHGSALFERGETQIMGVTTLDMVKMAQQIDSLGPETS 414
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P STG + + R+ G RAL V+ I
Sbjct: 415 KRYMHHYNFPPYSTGETGRVGSPKRREIGHGAL----AERALMPVLPSVEEFPYAIRQVS 470
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+ + ++G T ++ + ++L + ++ + V G + D
Sbjct: 471 EALGSNGSTSMGSVCASTLSLLNAGVPLKAPVAGIAMGLVSDE-----VDGETRYVALTD 525
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED+ D+D T + +Q + + L A++ ++ + +
Sbjct: 526 ILGAEDAFGDMDFKVAGTGMF-VTALQLDTKLDGIPSEVLAGALTQAREARLTILDVMAE 584
Query: 237 VISN 240
I
Sbjct: 585 AIDE 588
Score = 72.2 bits (175), Expect = 5e-11, Method: Composition-based stats.
Identities = 38/243 (15%), Positives = 65/243 (26%), Gaps = 27/243 (11%)
Query: 5 GRQENQMREISLTRR-VSKYAEGSCLVKF-GDTHLLTTATLEEKVPMWIRNT----KHGW 58
GR RE+ ++K A GS + DT LL+ T +
Sbjct: 26 GR-----REVRFETGRLAKQAAGSVVAYLDDDTMLLSATTAGKHPKDHFDFFPLTVDVEE 80
Query: 59 ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDV 118
G +P S R GR + R+I R LR Q+++
Sbjct: 81 RMYAAGRIPGSFFRR------EGRPSTDAILTCRLIDRPLRPTFADGVRNEVQVVVTVMS 134
Query: 119 IQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLD 178
+ AI A + +++ + A ++
Sbjct: 135 LDPKDLYDVVAINAASASTQLSGLPFSGPVGGVRVALIPTAADPAGQWVAFPTSEQLEGA 194
Query: 179 YGEDSTIDVDANFVMTDSGHIVEVQGSAERATF----------SQDHFFAMLNLAKDRIA 228
+ I+ V+ A +++ L AK IA
Sbjct: 195 VFDMVVAGRVVGSGDDADVAIMMVEAEATDNVIEKIAGGAQAPTEEVVAQGLEAAKPFIA 254
Query: 229 DLI 231
+L
Sbjct: 255 ELC 257
>gi|187778995|ref|ZP_02995468.1| hypothetical protein CLOSPO_02590 [Clostridium sporogenes ATCC
15579]
gi|187772620|gb|EDU36422.1| hypothetical protein CLOSPO_02590 [Clostridium sporogenes ATCC
15579]
Length = 702
Score = 136 bits (343), Expect = 2e-30, Method: Composition-based stats.
Identities = 48/243 (19%), Positives = 86/243 (35%), Gaps = 16/243 (6%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHG 57
R GR +++R IS + G+ L G T ++T AT + ++ I +
Sbjct: 312 RPDGRAFDEVRSISCEVGILPRTHGTGLFTRGLTQVMTVATLGALGDVQILDGIAEQESK 371
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y S G R+ G RAL ++ + I + +
Sbjct: 372 RYMHHYNFPSYSVGEVRPLRGPGRREIGHGAL----AERALEPLIPSESEFPYTIRLVSE 427
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
V+ ++G T A++ G+ +AL D ++ + + + + I D+
Sbjct: 428 VLSSNGSTSQASVCGSTLALLDAGVPIKRPAAGIAMGLITSED-------LEKEKVITDI 480
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T+ G I +Q + A S L AK ++ K+
Sbjct: 481 QGIEDFFGDMDFKVAGTEKG-ITSIQFDTKIAGLSNSCVKDALEGAKKARLHILGKIKEC 539
Query: 238 ISN 240
I
Sbjct: 540 IPE 542
Score = 85.3 bits (209), Expect = 7e-15, Method: Composition-based stats.
Identities = 37/236 (15%), Positives = 81/236 (34%), Gaps = 31/236 (13%)
Query: 12 REISL---TRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT----KHGWITAEYG 64
R++ + + A + + +GDT ++ A ++ I + G
Sbjct: 12 RKMKVDFGKTGMLSNA--AIFMSYGDTVVMINANASKEPREGIDFFPLSVDYEERLYSVG 69
Query: 65 MLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGG 124
+P R G+ +S R I R LR + QI+ ++ D
Sbjct: 70 KIPGGFIKR------EGKPSDKSILHARSIDRPLRPLFPKGYRNDVQIVNTVLSVEQDNL 123
Query: 125 TRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDST 184
AI G+ +AL S VAA+S G++ G I++ +
Sbjct: 124 PEILAINGSSLALC-------------LSSIPFTTPVAAVSVGLVDGEFIINPTVAQREN 170
Query: 185 IDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
+D T ++ V+ + ++ + + + +++ Q++ ++
Sbjct: 171 TILDLTVCATKE-RVMMVEAGGQE--IDEETMYNAIMFGFEECKNIVAFQEEAMAK 223
>gi|19553179|ref|NP_601181.1| polynucleotide phosphorylase/polyadenylase [Corynebacterium
glutamicum ATCC 13032]
gi|62390815|ref|YP_226217.1| polynucleotide phosphorylase/polyadenylase [Corynebacterium
glutamicum ATCC 13032]
gi|81760356|sp|Q8NP50|PNP_CORGL RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|21324745|dbj|BAB99368.1| Polyribonucleotide nucleotidyltransferase (polynucleotide
phosphorylase) [Corynebacterium glutamicum ATCC 13032]
gi|41326153|emb|CAF20316.1| PUTATIVE POLYRIBONUCLEOTIDE PHOSPHORYLASE / GUANOSINE
PENTAPHOSPHATESYNTHETASE [Corynebacterium glutamicum
ATCC 13032]
Length = 753
Score = 136 bits (342), Expect = 2e-30, Method: Composition-based stats.
Identities = 44/243 (18%), Positives = 87/243 (35%), Gaps = 14/243 (5%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKH 56
R+ GR +R++++ + A GS L + G+T +L TL+ E+ +
Sbjct: 367 FRIDGRGVTDIRDLAVEVELIPRAHGSSLFERGETQILGVTTLDMLKMEQQIDSLAPGDA 426
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P STG + + R+ G RA+ V+ I
Sbjct: 427 KRYMHHYNFPPYSTGETGRVGSPKRREIGHGAL----AERAVLPVIPSREEFPYAIRQVS 482
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+ + ++G T ++ + ++L++ ++ + V + G + D
Sbjct: 483 EALGSNGSTSMGSVCASTLSLYNAGVPLKAPVAGIAMGLV-----SGEIDGKTEYVALTD 537
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED+ D+D T I +Q + L A+D ++ D
Sbjct: 538 ILGAEDAFGDMDFKVAGTADF-ITALQLDTKLDGIPSKVLSDALEQARDARLTILNTMAD 596
Query: 237 VIS 239
VI+
Sbjct: 597 VIN 599
Score = 71.0 bits (172), Expect = 1e-10, Method: Composition-based stats.
Identities = 39/251 (15%), Positives = 69/251 (27%), Gaps = 27/251 (10%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGD-THLLTTATLE----EKVPMWIRNTKHGWITAEYGM 65
R I +++ A+G+ D T LL T T E + G
Sbjct: 29 RTIRFETGQLARQADGAVTTYLDDDTMLLATTTASNQPREGFDFFPLTVDVEERMYAAGR 88
Query: 66 LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125
+P S R GR + R+I R LR QI++ + +
Sbjct: 89 IPGSFFRR------EGRPSTEAILACRLIDRPLRPTFVKGLRNEVQIVVTVMSMNPEDYY 142
Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP-IVDLDYGEDST 184
AI GA A + +++ V+ + +
Sbjct: 143 DVVAINGASAATRISGLPVSGAVGGVRMALVVDEKHPEGQWVAFPTHAQHEQSVFEIVVA 202
Query: 185 IDVDANFVMTD---SGHIVEVQGSAERATF----------SQDHFFAMLNLAKDRIADLI 231
+ ++ V+ A ++ L AK I L
Sbjct: 203 GRLVERKRGNKTFSDVAVMMVEAGASENVVNRVKDGAPAPTEKIVSDGLEAAKPFIDILC 262
Query: 232 KLQKDVISNEV 242
+ Q + ++ V
Sbjct: 263 RAQ-EGLAQRV 272
>gi|167772649|ref|ZP_02444702.1| hypothetical protein ANACOL_04030 [Anaerotruncus colihominis DSM
17241]
gi|167665127|gb|EDS09257.1| hypothetical protein ANACOL_04030 [Anaerotruncus colihominis DSM
17241]
Length = 706
Score = 136 bits (342), Expect = 2e-30, Method: Composition-based stats.
Identities = 47/242 (19%), Positives = 84/242 (34%), Gaps = 19/242 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR+ +++R ++ + GS + G T +LT ATL E + I + +
Sbjct: 315 RVDGRKMDEIRPLAAEVGLLPRVHGSGMFTRGQTQVLTVATLGTISEAQKLDGIDDQEQK 374
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y S G R+ G RAL V+ I + +
Sbjct: 375 RYIHHYNFPSYSVGETRPSRGPGRREIGHGAL----AERALEPVIPPVEEFPYTIRLVSE 430
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
V+ ++G T +I G+ +AL D ++ + +G +VD+
Sbjct: 431 VLSSNGSTSQGSICGSTLALMDAGVPIKRPVAGISCGLITEGD---------RWMTMVDI 481
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI-KLQKD 236
ED D+D T+ G I +Q + + D ++ +
Sbjct: 482 QGLEDFFGDMDFKVGGTEKG-ITAIQMDLKIVGLTYDIIREAFEKTYKARMYILNDIMLP 540
Query: 237 VI 238
VI
Sbjct: 541 VI 542
Score = 86.4 bits (212), Expect = 3e-15, Method: Composition-based stats.
Identities = 36/232 (15%), Positives = 74/232 (31%), Gaps = 31/232 (13%)
Query: 13 EISLTRR---VSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKHGWITAEYGM 65
+++ A S LV++G+T +L T E + + + G
Sbjct: 16 KMTFETGKMCCLSNA--SVLVRWGETVVLVNVTASAKPREGIDFFPLSVDFEEKLYAVGK 73
Query: 66 LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125
+P S R R ++ R++ R +R + +++ + D
Sbjct: 74 IPGSFIKR------ESRPSDKAILSSRLVDRPIRPLFPKDMRNDCSVVMTVMSVDPDCLP 127
Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185
A + G A G +A I+ G++ G IV D + +
Sbjct: 128 EIAGMVGTSFA-------------LSISDIPWNGPIAGINVGLVDGEIIVSPDAAQRAKS 174
Query: 186 DVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
D++ + I ++ A D + + I ++ K+V
Sbjct: 175 DLNLTVAANED-VICMIEAGANEVA--NDVMLDAIIKGHEEIKRMVAFIKNV 223
>gi|120403341|ref|YP_953170.1| polynucleotide phosphorylase/polyadenylase [Mycobacterium
vanbaalenii PYR-1]
gi|187610302|sp|A1T7L4|PNP_MYCVP RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|119956159|gb|ABM13164.1| Polyribonucleotide nucleotidyltransferase [Mycobacterium
vanbaalenii PYR-1]
Length = 754
Score = 136 bits (342), Expect = 3e-30, Method: Composition-based stats.
Identities = 42/242 (17%), Positives = 80/242 (33%), Gaps = 10/242 (4%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKH 56
R+ GR +R +S V A GS L + G+T ++ TL+ + +
Sbjct: 345 FRIDGRGVTDIRALSAEVAVVPRAHGSALFERGETQIMGVTTLDMVKMAQQIDSLGPETS 404
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P STG + + R+ G RAL V+ I
Sbjct: 405 KRYMHHYNFPPYSTGETGRVGSPKRREIGHGAL----AERALVPVLPSVEEFPYAIRQVS 460
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+ + ++G T ++ + ++L + ++ + V D
Sbjct: 461 EALGSNGSTSMGSVCASTLSLLNAGVPLKAPVAGIAMGLVSDDIEIDGKTERRFVTL-TD 519
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED+ D+D T + +Q + L AKD ++++ +
Sbjct: 520 ILGAEDAFGDMDFKCAGTKDF-VTALQLDTKLDGIPSQVLAGALAQAKDARITILEVMAE 578
Query: 237 VI 238
I
Sbjct: 579 AI 580
>gi|325681163|ref|ZP_08160693.1| polyribonucleotide nucleotidyltransferase [Ruminococcus albus 8]
gi|324107085|gb|EGC01371.1| polyribonucleotide nucleotidyltransferase [Ruminococcus albus 8]
Length = 704
Score = 136 bits (342), Expect = 3e-30, Method: Composition-based stats.
Identities = 43/244 (17%), Positives = 83/244 (34%), Gaps = 18/244 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +++R ++ V GS + G T ++T TL + + +
Sbjct: 314 RVDGRGIDEIRPLAAEVGVLPRVHGSGIFTRGQTQVMTVCTLGPISDAQKLDGLDEETSK 373
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
+Y S G R+ G RAL V+ I +
Sbjct: 374 RYMHQYNFPSYSVGETRPSRGPGRREIGHGAL----AERALVPVLPSVEEFPYAIRCVSE 429
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
V+ ++G T +I G+ +AL D +++ + K + +VD+
Sbjct: 430 VLSSNGSTSQGSICGSTLALMDAGVPIKEPVAGISCGLITKEDGS--------WMTMVDI 481
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI-KLQKD 236
ED D+D T +G I +Q + + D + + ++ ++
Sbjct: 482 QGLEDFYGDMDFKVGGTKNG-ITAIQVDIKVDGLTMDIIASAFEKTRKARMYILDEIMLK 540
Query: 237 VISN 240
I
Sbjct: 541 AIPE 544
Score = 96.5 bits (238), Expect = 3e-18, Method: Composition-based stats.
Identities = 34/229 (14%), Positives = 74/229 (32%), Gaps = 27/229 (11%)
Query: 12 REISLTRRVSKY-AEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKHGWITAEYGML 66
R + + + A GSC V++G+T ++ T E V + + G +
Sbjct: 15 RPVVVETGKTCGLANGSCWVRYGETVVMANVTASKKPREGVDFFPLSVDFEEKMYAVGRI 74
Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
P S R G+ ++ R + R +R + +++ + D
Sbjct: 75 PGSFTKR------EGKASDKAILTSRCVDRPIRPLFPKDMRNDVTVVMTVLSVDPDNSPE 128
Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
+ +A G VA+I+ G + G +++ + +
Sbjct: 129 ITGMIATAIA-------------ISISDIPWNGPVASINVGYVDGELVLNPTLEQRAKNK 175
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
++ + IV ++ AE D + I +++ K
Sbjct: 176 LNLTVAGSAE-KIVMIEAGAEE--IPDDLMLKAIETGHAEIKKMVEFIK 221
>gi|123968917|ref|YP_001009775.1| polynucleotide phosphorylase/polyadenylase [Prochlorococcus marinus
str. AS9601]
gi|187610314|sp|A2BSA7|PNP_PROMS RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|123199027|gb|ABM70668.1| polyribonucleotide nucleotidyltransferase [Prochlorococcus marinus
str. AS9601]
Length = 721
Score = 136 bits (342), Expect = 3e-30, Method: Composition-based stats.
Identities = 43/242 (17%), Positives = 88/242 (36%), Gaps = 19/242 (7%)
Query: 2 RLSGRQENQMREISLTRRVSK-YAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
R+ GR +++R+IS + + GS L + G T +L+T TL + + + +
Sbjct: 323 RVDGRDLDEVRKISASAGILPKRVHGSALFQRGLTQVLSTTTLGTPSDAQEMDDLNPSTE 382
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P S G R+ G RA+ V+ + +
Sbjct: 383 KTYLHHYNFPPYSVGETRPMRTPGRREIGHGAL----AERAIIPVLPGKETFPYVLRVVS 438
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V+ ++G T ++ G+ ++L D ++ + + + +G + D
Sbjct: 439 EVLSSNGSTSMGSVCGSTLSLLDAGVPLKAPVSGTAMGLIKEGKEV---------RILTD 489
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D TD G I +Q + + A+ +++ +
Sbjct: 490 IQGIEDFLGDMDFKVAGTDKG-ITALQMDMKITGLPVSIISDAIKKARPARIHILEKMQG 548
Query: 237 VI 238
I
Sbjct: 549 AI 550
Score = 99 bits (247), Expect = 3e-19, Method: Composition-based stats.
Identities = 55/235 (23%), Positives = 90/235 (38%), Gaps = 26/235 (11%)
Query: 10 QMREISLTRR-VSKYAEGSCLVKFGDTHLLTTATLE---EKVPMWIRNTKHGWITAEYGM 65
REI LT + A GS +++ GDT LL TAT E + G
Sbjct: 11 DGREIRLTTGLYAPQASGSVMIECGDTSLLVTATKTAKKEPSDFLPLICDYEEKLFAAGR 70
Query: 66 LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125
+P R GR R+ I R+I R +R + QI+ C +
Sbjct: 71 IPGGFMRR------EGRPPERATLIARLIDRPMRPLFPTWMGDEIQIVASCLSLDERVPA 124
Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185
A+TGA +A G +AA+ G++ I++ Y E
Sbjct: 125 DVLAVTGASIAT-------------LVGEIPFYGPMAAVRVGLIGDDFILNPSYREIEKG 171
Query: 186 DVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
D+D + G IV ++ A + S+ ++ + + +LIK Q+D++ +
Sbjct: 172 DLDIVVAGSPDG-IVMIEAGANQ--LSEQDTIEAIDFGYEAVTELIKSQEDLLQD 223
>gi|73669984|ref|YP_305999.1| exosome complex exonuclease 1 [Methanosarcina barkeri str. Fusaro]
gi|72397146|gb|AAZ71419.1| ribosomal RNA-processing protein RRP41/SKI6 [Methanosarcina barkeri
str. Fusaro]
Length = 501
Score = 136 bits (342), Expect = 3e-30, Method: Composition-based stats.
Identities = 60/242 (24%), Positives = 103/242 (42%), Gaps = 22/242 (9%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKV-PMWIRNTKHGWI 59
+RL GR +++R + + V A+GSC +++G +L + P + I
Sbjct: 14 LRLDGRHADEIRPMKIEIGVLSRADGSCYLEWGRNKVLVGVFGPREAHPRRSQRADTAVI 73
Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119
+Y M ST +R + RS EI ++ A V+ I I +++
Sbjct: 74 RYKYNMASFSTEDRARPG-----PSRRSIEISKVSREAFEPVIMAELFPKTAIDIFVEIL 128
Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179
QAD GTRTAAI + +AL D +KG V + + G + G ++DL+
Sbjct: 129 QADAGTRTAAINASSIALADAGI-------------PMKGLVTSCAFGKVDGQIVLDLNK 175
Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
ED+ + D MT G I +Q + D L K +++++Q+ V+
Sbjct: 176 EEDNYGEADFPVAMTQDGEITLLQMDGN---LTTDEIRKGFELVKKGCKEILEIQQAVLR 232
Query: 240 NE 241
+
Sbjct: 233 TK 234
>gi|296394402|ref|YP_003659286.1| guanosine pentaphosphate synthetase I/polyribonucleotide
nucleotidyltransferase [Segniliparus rotundus DSM 44985]
gi|296181549|gb|ADG98455.1| guanosine pentaphosphate synthetase I/polyribonucleotide
nucleotidyltransferase [Segniliparus rotundus DSM 44985]
Length = 737
Score = 136 bits (342), Expect = 3e-30, Method: Composition-based stats.
Identities = 42/244 (17%), Positives = 79/244 (32%), Gaps = 14/244 (5%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKH 56
R+ GR +R +S GS L + G+T +L TL+ + +
Sbjct: 341 FRIDGRGLRDIRPLSAEISPVPRVHGSALFQRGETQILGVTTLDLLKMAQEVDALGPVSK 400
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P STG + + R+ G RAL V+ I
Sbjct: 401 RHYMHHYNFPPYSTGETGRVGSPKRREIGHGAL----AERALVPVLPSVEEFPYAIRQVS 456
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+ + ++G T ++ + ++L ++ + V + G + D
Sbjct: 457 EALSSNGSTSMGSVCASTMSLLAAGVPIKAPVAGIAMGLV-----SGEVNGETKYVTLTD 511
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED+ D+D T + +Q + L AK+ L+ + +
Sbjct: 512 ILGAEDAFGDMDFKVAGTADF-VTALQLDTKLDGIPSQVLAEALAQAKEARDTLLDVIAN 570
Query: 237 VISN 240
I
Sbjct: 571 AIDE 574
>gi|126465758|ref|YP_001040867.1| ribosomal RNA-processing protein RRP41/SKI6 [Staphylothermus
marinus F1]
gi|126014581|gb|ABN69959.1| ribosomal RNA-processing protein RRP41/SKI6 [Staphylothermus
marinus F1]
Length = 240
Score = 136 bits (342), Expect = 3e-30, Method: Composition-based stats.
Identities = 68/243 (27%), Positives = 105/243 (43%), Gaps = 23/243 (9%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKV-PMWIRNTKHGWI 59
+R GR+ N++R I + V K A+GS V++G T ++ +V P + I
Sbjct: 12 LRHDGRKPNELRPIKMDVGVLKNADGSAYVEYGGTKVIAAVYGPREVYPRHLALPDRALI 71
Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119
Y M P ST +R S R E+ ++I AL S+V I + +V+
Sbjct: 72 RCRYHMAPFSTSDRK-----SPAPSRREIELSKVIREALESLVFSELYPRTTIDVFIEVL 126
Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179
QADGGTRT +T A +AL D M D VA ++ G + G ++D+D
Sbjct: 127 QADGGTRTTGLTAASLALADAGIPMRDL-------------VAGVAVGKVDGVLVLDIDE 173
Query: 180 GEDSTIDVDANF-VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
ED + D IV +Q + + + F LNLAK + K K+ +
Sbjct: 174 VEDEYGEADMPIGYAAGIDEIVLLQLNG---VLTVEEFREALNLAKWGAEQIYKTMKETL 230
Query: 239 SNE 241
+
Sbjct: 231 HKK 233
>gi|187610325|sp|Q6MDI2|PNP_PARUW RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
Length = 697
Score = 136 bits (341), Expect = 3e-30, Method: Composition-based stats.
Identities = 45/241 (18%), Positives = 85/241 (35%), Gaps = 18/241 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKH 56
+R GR +R I + + + A GS L G+T L TL + + +
Sbjct: 315 VRSDGRTSTDIRFIDIEQSLLPRAHGSSLFTRGETQALAVCTLGGASMAQRFEDLEGEGN 374
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
+Y P S G + A R+ G + RAL +V+ I ++
Sbjct: 375 NRFYLQYSFPPYSVGEVGRVGAPGRREIGHGKL----AERALMAVIPTKEQFPYTIRLES 430
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
++ +++G + A + G +AL D ++ + +L+ I
Sbjct: 431 NITESNGSSSMATVCGGCLALMDAGVAIKRPVAGIAMGLILENERFIILSD--------- 481
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED+ D+D +G I Q + + + L AK+ ++
Sbjct: 482 ILGIEDALGDMDFKVTGDQNG-ITAFQMDIKVEGITIEIMRVALKQAKEGRVHILNKMLA 540
Query: 237 V 237
V
Sbjct: 541 V 541
Score = 96.8 bits (239), Expect = 2e-18, Method: Composition-based stats.
Identities = 34/225 (15%), Positives = 67/225 (29%), Gaps = 19/225 (8%)
Query: 13 EISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG 71
EI +++ A G+ +V+ G+T + TTA E T
Sbjct: 14 EIIFETGKIARQAGGAVVVRCGETVVFTTACAAPNADSTTDFLPLRVDYQEKFSSAGKTL 73
Query: 72 NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAIT 131
GR + + R+I R +R + + Q++ AI
Sbjct: 74 --GGFIKREGRPTEKEVLVSRLIDRPIRPMFEEGYYNEVQLLSFVWSYDGINSPEPLAIC 131
Query: 132 GAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANF 191
GA A L V A+ G + IV+ + +D
Sbjct: 132 GASAA-------------LVISDIPLIKPVGAVRIGFIDAQFIVNPTIEQQKQSKLDLLI 178
Query: 192 VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
T+ ++ ++ ++D + + I + + +
Sbjct: 179 AGTEE-AVLMIE--GFCDFLTEDQVLEAIEIGHRSIKTICQTLEQ 220
>gi|212223175|ref|YP_002306411.1| exosome complex exonuclease Rrp41 [Thermococcus onnurineus NA1]
gi|226740341|sp|B6YSI2|ECX1_THEON RecName: Full=Probable exosome complex exonuclease 1
gi|212008132|gb|ACJ15514.1| 3'-5' exoribonuclease [Thermococcus onnurineus NA1]
Length = 249
Score = 136 bits (341), Expect = 3e-30, Method: Composition-based stats.
Identities = 64/242 (26%), Positives = 103/242 (42%), Gaps = 23/242 (9%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKV-PMWIRNTKHGWIT 60
R+ GR++ ++R I + V K A+GS V++G +L ++ P ++ +
Sbjct: 17 RIDGRKKYELRPIKMEVGVLKNADGSAYVEWGKNKILAAVYGPREIHPKHLQRPDRAILR 76
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
Y M P S R K RS EI ++I AL + L I I +V+Q
Sbjct: 77 VRYNMAPFSVEERKKPG-----PDRRSVEISKVIRGALEPALILEMFPRTAIDIFIEVLQ 131
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
AD GTR A IT A +AL D M D VAA + G + G ++DL+
Sbjct: 132 ADAGTRVAGITAASLALADAGIPMRDL-------------VAACAAGKIEGEIVLDLNKE 178
Query: 181 EDSTIDVDANF-VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
ED+ + D +M I +Q ++D F + LA + + Q++ +
Sbjct: 179 EDNYGEADVPVAIMPLKNDITLLQMDGY---LTRDEFIEAVRLAIKGAKAVYQKQREALK 235
Query: 240 NE 241
+
Sbjct: 236 EK 237
>gi|298674553|ref|YP_003726303.1| exosome complex exonuclease 1 [Methanohalobium evestigatum Z-7303]
gi|298287541|gb|ADI73507.1| exosome complex exonuclease 1 [Methanohalobium evestigatum Z-7303]
Length = 333
Score = 136 bits (341), Expect = 3e-30, Method: Composition-based stats.
Identities = 55/242 (22%), Positives = 108/242 (44%), Gaps = 22/242 (9%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEK-VPMWIRNTKHGWI 59
+R+ GR+ +++R + + V A+GSC +++G+ +++ + P ++ I
Sbjct: 14 LRVDGRRTDEIRPMKVDIGVLSRADGSCYLEWGNNKIISAVYGPRELHPRRMQRPDAAVI 73
Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119
+Y M S +R + RS EI ++ A VV + I + +V+
Sbjct: 74 RYKYNMASFSVEDRQRPG-----PSRRSSEISKVSSEAFEPVVMTQFYPNTVIDVFSEVL 128
Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179
+AD GTRTAAI A +AL D ++ V+A + G + G ++DL+
Sbjct: 129 EADAGTRTAAINAATLALIDAGIPLKSL-------------VSACAVGKVDGQLVLDLNK 175
Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
ED+ + D +T G I +Q ++D + L K+ + ++Q++ +
Sbjct: 176 KEDNEGEADLPVAITQDGEITLLQMDGH---LTEDEIKQAMELVKNGCQQIQQIQREALL 232
Query: 240 NE 241
+
Sbjct: 233 KK 234
>gi|46446277|ref|YP_007642.1| polynucleotide phosphorylase/polyadenylase [Candidatus
Protochlamydia amoebophila UWE25]
gi|46399918|emb|CAF23367.1| probable polyribonucleotide nucleotidyltransferase [Candidatus
Protochlamydia amoebophila UWE25]
Length = 702
Score = 136 bits (341), Expect = 3e-30, Method: Composition-based stats.
Identities = 45/241 (18%), Positives = 85/241 (35%), Gaps = 18/241 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKH 56
+R GR +R I + + + A GS L G+T L TL + + +
Sbjct: 320 VRSDGRTSTDIRFIDIEQSLLPRAHGSSLFTRGETQALAVCTLGGASMAQRFEDLEGEGN 379
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
+Y P S G + A R+ G + RAL +V+ I ++
Sbjct: 380 NRFYLQYSFPPYSVGEVGRVGAPGRREIGHGKL----AERALMAVIPTKEQFPYTIRLES 435
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
++ +++G + A + G +AL D ++ + +L+ I
Sbjct: 436 NITESNGSSSMATVCGGCLALMDAGVAIKRPVAGIAMGLILENERFIILSD--------- 486
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED+ D+D +G I Q + + + L AK+ ++
Sbjct: 487 ILGIEDALGDMDFKVTGDQNG-ITAFQMDIKVEGITIEIMRVALKQAKEGRVHILNKMLA 545
Query: 237 V 237
V
Sbjct: 546 V 546
Score = 96.8 bits (239), Expect = 2e-18, Method: Composition-based stats.
Identities = 34/225 (15%), Positives = 67/225 (29%), Gaps = 19/225 (8%)
Query: 13 EISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG 71
EI +++ A G+ +V+ G+T + TTA E T
Sbjct: 19 EIIFETGKIARQAGGAVVVRCGETVVFTTACAAPNADSTTDFLPLRVDYQEKFSSAGKTL 78
Query: 72 NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAIT 131
GR + + R+I R +R + + Q++ AI
Sbjct: 79 --GGFIKREGRPTEKEVLVSRLIDRPIRPMFEEGYYNEVQLLSFVWSYDGINSPEPLAIC 136
Query: 132 GAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANF 191
GA A L V A+ G + IV+ + +D
Sbjct: 137 GASAA-------------LVISDIPLIKPVGAVRIGFIDAQFIVNPTIEQQKQSKLDLLI 183
Query: 192 VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
T+ ++ ++ ++D + + I + + +
Sbjct: 184 AGTEE-AVLMIE--GFCDFLTEDQVLEAIEIGHRSIKTICQTLEQ 225
>gi|319441544|ref|ZP_07990700.1| polynucleotide phosphorylase/polyadenylase [Corynebacterium
variabile DSM 44702]
Length = 762
Score = 136 bits (341), Expect = 3e-30, Method: Composition-based stats.
Identities = 42/243 (17%), Positives = 85/243 (34%), Gaps = 14/243 (5%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKH 56
R+ GR +R++ + + A GS L + G+T +L TL+ E+ +
Sbjct: 378 FRIDGRDTTAIRDLGVMIDLVPRAHGSALFERGETQILGVTTLDMLKMEQQIDSLGPVTS 437
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P STG + + R+ G RAL VV + I
Sbjct: 438 KRYIHHYNFPPYSTGETGRVGSPKRREIGHGAL----AERALLPVVPSREVFPYTIRQVS 493
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+ + ++G T ++ + +++++ ++ + V G + D
Sbjct: 494 EALGSNGSTSMGSVCASTLSMYNAGVPLKAPVAGIAMGLVT-----GEVDGKDTYVTLTD 548
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED+ D+D T I +Q + L+ A+ +++ +
Sbjct: 549 ILGAEDAFGDMDFKVAGTADF-ITALQLDTKVDGIPAKVLAEALSQARGARLEILSTMAE 607
Query: 237 VIS 239
I
Sbjct: 608 AIE 610
Score = 69.9 bits (169), Expect = 3e-10, Method: Composition-based stats.
Identities = 37/259 (14%), Positives = 73/259 (28%), Gaps = 45/259 (17%)
Query: 12 REISLTRRV-SKYAEGSCLVKF-GDTHLLTTATLE----EKVPMWIRNTKHGWITAEYGM 65
R ++ + ++ A+GS DT LL+T T E + + G
Sbjct: 41 RTLTFETGLLARQADGSVTAYLDDDTMLLSTTTASKHPRENLDFFPLTVDVEERMYAAGR 100
Query: 66 LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125
+P S R GR G + R+I R LR Q+++ + +
Sbjct: 101 IPGSFFRR------EGRPGTEAILACRLIDRPLRPTFAKGLRNEVQVVVTVLSMDPEDMY 154
Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185
AI A + + +++ V + G + +
Sbjct: 155 DVVAINAASASTQLSGLPVSGPVGGVRMALV-------VDEAHADGQWVAFPTREQHEQA 207
Query: 186 DVDANFVM----------------TDSGHIVEVQGSAERATF----------SQDHFFAM 219
+ D ++ V+ A ++
Sbjct: 208 VFELVVAGRVSEVKKPRGRRKAVPGDDVVVMMVEAGATENVVERIAEGAPAPTEKIVAEG 267
Query: 220 LNLAKDRIADLIKLQKDVI 238
+ A+ IA+L Q ++
Sbjct: 268 IEAARPFIAELCGAQAALV 286
>gi|28174955|gb|AAH27228.2| Pnpt1 protein [Mus musculus]
Length = 647
Score = 136 bits (341), Expect = 4e-30, Method: Composition-based stats.
Identities = 49/247 (19%), Positives = 87/247 (35%), Gaps = 17/247 (6%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE--------EKVPMWIRN 53
R GR +R IS + K GS L + G T +L T T + +++ I
Sbjct: 222 RCDGRDLTSLRNISCEVDMFKTLHGSALFQRGQTQVLCTVTFDSLESSIKSDQIITAING 281
Query: 54 TKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQII 113
K Y P +T K V+ R+ G +AL V+ I
Sbjct: 282 VKDKNFMLHYEFPPYATNETGKVTGVNRRELGHGAL----AEKALCPVIPKDFPF--TIR 335
Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP 173
+ +V++++G + A+ G +AL D + + V K + +
Sbjct: 336 VTSEVLESNGSSSMASACGGSLALMDAGVPISSAVAGVAVGLVTKTNP--EKGEIEDYRL 393
Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
+ D+ ED D+D T+ G I +Q + + A +++++
Sbjct: 394 LTDILGIEDYNGDMDFKIAGTNKG-ITALQADIKLPGVPIKIIMEAIQQASVAKKEILQI 452
Query: 234 QKDVISN 240
IS
Sbjct: 453 MNKTISK 459
Score = 36.7 bits (83), Expect = 2.8, Method: Composition-based stats.
Identities = 19/116 (16%), Positives = 33/116 (28%), Gaps = 2/116 (1%)
Query: 110 RQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML 169
+ D + + D L G V A+ GM+
Sbjct: 1 SIRPLFPAGYFYDTQVLCNLLAVDGINEPDILAVNGASVALSLSDIPWNGPVGAVRIGMI 60
Query: 170 CGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKD 225
G +V+ E S+ ++ IV ++ SAE Q F + +
Sbjct: 61 DGECVVNPTRREMSSSTLNLVVAGAPKSQIVMLEASAEN--ILQQDFCHAIKVGVK 114
>gi|91772267|ref|YP_564959.1| exosome complex exonuclease Rrp41 [Methanococcoides burtonii DSM
6242]
gi|91711282|gb|ABE51209.1| Archaeal exosome complex RNA-binding protein [Methanococcoides
burtonii DSM 6242]
Length = 343
Score = 136 bits (341), Expect = 4e-30, Method: Composition-based stats.
Identities = 62/242 (25%), Positives = 109/242 (45%), Gaps = 22/242 (9%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEK-VPMWIRNTKHGWI 59
+RL GR+ +++R +++ V A+GSC +++G+ +L + P ++ +
Sbjct: 14 LRLDGRRVDEIRPMTVEMGVLSRADGSCYLEWGNNKVLAAVYGPRELHPRRLQRPSEALV 73
Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119
Y M S +R++ RS EI ++ G A +VV I + +V+
Sbjct: 74 RYRYNMAAFSVEDRIRPG-----PSRRSTEISKVSGEAFETVVMKQFYPGAVIDVFAEVL 128
Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179
QAD GTRTAAI A +AL D +KG VAA + G + G ++DL+
Sbjct: 129 QADAGTRTAAINAATLALVDAGI-------------PMKGLVAACAVGKVDGQLVIDLNK 175
Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
ED+ D D MT+ G I +Q + D + + + + +QK+ +
Sbjct: 176 PEDNYGDADLPIAMTEDGEITLLQMDGN---LTADEIAKGVEMVRKGCEQIFAIQKEALL 232
Query: 240 NE 241
++
Sbjct: 233 SK 234
>gi|167044148|gb|ABZ08830.1| putative 3' exoribonuclease family, domain 1 [uncultured marine
crenarchaeote HF4000_APKG5E24]
Length = 245
Score = 135 bits (340), Expect = 4e-30, Method: Composition-based stats.
Identities = 63/243 (25%), Positives = 100/243 (41%), Gaps = 23/243 (9%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKV-PMWIRNTKHGWI 59
+R GR+ N+ R++++ V K A+GS ++FG +L V P + N G +
Sbjct: 16 IRSDGRKVNETRKVTIKVGVLKNADGSAYIEFGGNKILAGVFGPRDVHPKHMSNPDTGIL 75
Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119
Y M P S R + R EI +++ AL V L I + +V+
Sbjct: 76 RVRYHMEPFSVSERK-----NPAPSRREIEISKVLKEALEPAVILEKFPRTAIDVYLEVL 130
Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179
QADGGTR AA+ A VAL D M D V + + G I+D++
Sbjct: 131 QADGGTRCAALDAASVALADAGIPMRD-------------MVCSCAAGKAADTLILDVNN 177
Query: 180 GEDSTIDVDANF-VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
ED D M + G I +Q + D F + L + + ++QK+ +
Sbjct: 178 EEDQAGQADMPIGYMPNFGKITLLQLDG---VLTTDEFKKCIELGIEGCKQVYEIQKNAL 234
Query: 239 SNE 241
+
Sbjct: 235 REK 237
>gi|302788516|ref|XP_002976027.1| hypothetical protein SELMODRAFT_104548 [Selaginella moellendorffii]
gi|300156303|gb|EFJ22932.1| hypothetical protein SELMODRAFT_104548 [Selaginella moellendorffii]
Length = 705
Score = 135 bits (340), Expect = 4e-30, Method: Composition-based stats.
Identities = 43/244 (17%), Positives = 83/244 (34%), Gaps = 10/244 (4%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
+R+ GR +R++ + GS L G+T +L T TL + + I
Sbjct: 315 IRVDGRSLTDVRDLYCEAGIYPALHGSSLFSRGNTQVLCTVTLGAPEDAQKLDSIVGPPK 374
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P S K ++ R+ G ++ + L + ++
Sbjct: 375 KRFMVHYSFPPFSVNEVGKVGGLNRREVGHGTLAEKALVALLP---PEDENFPYSVRVNS 431
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V+ +DG + A + G +AL D ++ + + A + + + D
Sbjct: 432 EVMASDGSSSMATVCGGSLALMDAGIPLKSHVAGISVGLMTNVD--AETGEIKNYKILTD 489
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T G + +Q + L A ++ L +
Sbjct: 490 ILGLEDHLGDMDFKIAGTKKG-VTAIQLDIKLPGVPLHILCEALEPAYVARKKILDLMEK 548
Query: 237 VISN 240
IS
Sbjct: 549 EISK 552
Score = 85.3 bits (209), Expect = 8e-15, Method: Composition-based stats.
Identities = 38/230 (16%), Positives = 75/230 (32%), Gaps = 20/230 (8%)
Query: 14 ISLTRRVSKY-AEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGN 72
++ A G+ + G+T +L T +E++ E N
Sbjct: 15 LTFETGKLAQFAAGAVVCGAGETKVLVTVVSDERLDAGRDFMPLQVEYREKSYAQGKIPN 74
Query: 73 RVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITG 132
R + ++ R+I R++R + QI+ + + A
Sbjct: 75 TFMRREGAPKEREL--LCGRVIDRSIRPLFPKGYYFETQIMANVLCSDGEQDPDILAANA 132
Query: 133 AWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFV 192
A AL G + + G + G +V+ D S D++ +
Sbjct: 133 ASAALALSDV-------------PWNGPIGVVRIGRVDGKFVVNPDMDTLSGSDLNLIYS 179
Query: 193 MTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNEV 242
T + ++ A + F A L LA + LI+ Q+ ++ +V
Sbjct: 180 CTAERSL-MIETQARE--ITNKDFTAALKLAHSEASKLIEPQRR-LAAKV 225
>gi|74183452|dbj|BAE36595.1| unnamed protein product [Mus musculus]
Length = 783
Score = 135 bits (340), Expect = 4e-30, Method: Composition-based stats.
Identities = 49/247 (19%), Positives = 87/247 (35%), Gaps = 17/247 (6%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE--------EKVPMWIRN 53
R GR +R IS + K GS L + G T +L T T + +++ I
Sbjct: 358 RCDGRDLTSLRNISCEVDMFKTLHGSALFQRGQTQVLCTVTFDSLESSIKSDQIITAING 417
Query: 54 TKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQII 113
K Y P +T K V+ R+ G +AL V+ I
Sbjct: 418 VKDKNFMLHYEFPPYATNETGKVTGVNRRELGHGAL----AEKALCPVIPKDFPF--TIR 471
Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP 173
+ +V++++G + A+ G +AL D + + V K + +
Sbjct: 472 VTSEVLESNGSSSMASACGGSLALMDAGVPISSAVAGVAVGLVTKTNP--EKGEIEDYRL 529
Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
+ D+ ED D+D T+ G I +Q + + A +++++
Sbjct: 530 LTDILGIEDYNGDMDFKIAGTNKG-ITALQADIKLPGVPIKIIMEAIQQASVAKKEILQI 588
Query: 234 QKDVISN 240
IS
Sbjct: 589 MNKTISK 595
Score = 69.5 bits (168), Expect = 3e-10, Method: Composition-based stats.
Identities = 40/218 (18%), Positives = 77/218 (35%), Gaps = 25/218 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTA---TLEEKVPMWIRNTKHGWITAEYGMLP 67
R++ ++ ++++A+G +++ GDT ++ TA T + A G +P
Sbjct: 54 RKLEISSGKLARFADGCAVIQSGDTAVMVTAVSKTKASPSQFMPLVVDYRQKAAAAGRIP 113
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
+ R R R+I R++R + Q++ + +
Sbjct: 114 TNYLRREIGS------SDREVLTSRVIDRSIRPLFPAGYFYDTQVLCNLLAVDGINEPDI 167
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
A+ GA VA G V A+ GM+ G +V+ E S+ +
Sbjct: 168 LAVNGASVA-------------LSLSDIPWNGPVGAVRIGMIDGECVVNPTRREMSSSTL 214
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKD 225
+ IV ++ SAE Q F + +
Sbjct: 215 NLVVAGAPKSQIVMLEASAEN--ILQQDFCHAIKVGVK 250
>gi|328885433|emb|CCA58672.1| Polyribonucleotide nucleotidyltransferase [Streptomyces venezuelae
ATCC 10712]
Length = 739
Score = 135 bits (340), Expect = 4e-30, Method: Composition-based stats.
Identities = 40/242 (16%), Positives = 81/242 (33%), Gaps = 14/242 (5%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
+R+ GR +R ++ GS L + G+T +L TL E+ +
Sbjct: 338 VRIDGRGITDIRTLAAEVEAIPRVHGSALFERGETQILGVTTLNMLRMEQQLDTLSPVTR 397
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P S G + + R+ G RAL V+ I
Sbjct: 398 KRYMHNYNFPPYSVGETGRVGSPKRREIGHGAL----AERALVPVLPTREEFPYAIRQVS 453
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+ + ++G T ++ + ++L + ++ + + + G + D
Sbjct: 454 EALGSNGSTSMGSVCASTMSLLNAGVPLKAPVAGIAMGLISEEID-----GQTHYVALTD 508
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED+ D+D T + +Q + A L A+D ++ + +
Sbjct: 509 ILGAEDAFGDMDFKVAGTKEF-VTALQLDTKLDGIPASVLAAALKQARDARLHILDVMME 567
Query: 237 VI 238
I
Sbjct: 568 AI 569
Score = 83.0 bits (203), Expect = 3e-14, Method: Composition-based stats.
Identities = 44/243 (18%), Positives = 68/243 (27%), Gaps = 39/243 (16%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGD-THLLTTATLEEKVPMWIRNT----KHGWITAEYGM 65
R I ++K A GS + D T +L+ T ++ + G
Sbjct: 20 RTIRFETGRLAKQAAGSAVAYLDDDTMVLSATTASKRPKDQLDFFPLTVDVEERQYAAGK 79
Query: 66 LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125
+P S R GR + R+I R LR QI+ + D
Sbjct: 80 IPGSFFRR------EGRPSEDAVLTCRLIDRPLRPSFKKGLRNEIQIVETIMALNPDHLY 133
Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185
AI A + G + A ++ G + + E
Sbjct: 134 DVVAINAASASTILAG-------------LPFSGPIGATRVALIKGQWVAFPTHTELEDA 180
Query: 186 DVDANFVMT----DSGHIVEVQGSAERATF----------SQDHFFAMLNLAKDRIADLI 231
D I+ V+ A T +++ A L AK I L
Sbjct: 181 VFDMVVAGRVLEDGDVAIMMVEAEATEKTIALVKGGAEAPTEEIVAAGLEAAKPFIKVLC 240
Query: 232 KLQ 234
K Q
Sbjct: 241 KAQ 243
>gi|291458661|ref|ZP_06598051.1| polyribonucleotide nucleotidyltransferase [Oribacterium sp. oral
taxon 078 str. F0262]
gi|291419194|gb|EFE92913.1| polyribonucleotide nucleotidyltransferase [Oribacterium sp. oral
taxon 078 str. F0262]
Length = 701
Score = 135 bits (340), Expect = 4e-30, Method: Composition-based stats.
Identities = 43/245 (17%), Positives = 77/245 (31%), Gaps = 18/245 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE-----EKVPMWIRNTKH 56
R GR+ +++R + + GS + K G T +L TL +KV
Sbjct: 312 RPDGRRIDEIRPLEAEVDLIPRVHGSAMFKRGQTQILNITTLAPLSEVQKVEGLNEYETE 371
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
+Y S G R+ G RAL V+ I
Sbjct: 372 KRYLHQYNFPGYSVGEARASRGPGRREIGHGAL----AERALLPVLPSVEDFPYAIRSVS 427
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+ ++++G T A+ + ++L + V + D
Sbjct: 428 ETMESNGSTSMASTCASCMSLMAAGVPIRKMVAGISCGLV-------TGESDEDYLVLTD 480
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK-LQK 235
+ ED D+D T G I +Q + ++D + A + ++ + K
Sbjct: 481 IQGLEDFFGDMDFKVTGTREG-ITAIQMDIKIHGLTRDIVEEAIRRAHEARLFIMDGVMK 539
Query: 236 DVISN 240
IS
Sbjct: 540 SAISE 544
Score = 85.3 bits (209), Expect = 7e-15, Method: Composition-based stats.
Identities = 39/234 (16%), Positives = 74/234 (31%), Gaps = 27/234 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----HGWITAEYGML 66
R +++ V A G+ L+ +G+T +L++ T EK I + G
Sbjct: 12 RTLTVDIGRVCAQANGAALMHYGETTVLSSCTASEKPRDGIDFFPLSVEYEEKMYAVGKF 71
Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
P R R + R+I R +R + + + D
Sbjct: 72 PGGFKKR------EARPADSAILTDRVIDRPMRPLFPKDYRNDVLLDNLVLSVDQDCSPE 125
Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
A+ G+ +A G A+ GM+ G I++ E + D
Sbjct: 126 LLAMLGSSLAAC-------------ISDVPFDGPCASTQVGMINGEFIMNPGNAEKTASD 172
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
+ T ++ ++ A S + + LA +I +I+
Sbjct: 173 LLLTVASTRD-KVIMIEAGANE--ISDEKMIEAIYLAHGLNQQIIGFFDSIIAE 223
>gi|229815242|ref|ZP_04445578.1| hypothetical protein COLINT_02288 [Collinsella intestinalis DSM
13280]
gi|229809252|gb|EEP45018.1| hypothetical protein COLINT_02288 [Collinsella intestinalis DSM
13280]
Length = 714
Score = 135 bits (340), Expect = 4e-30, Method: Composition-based stats.
Identities = 46/241 (19%), Positives = 86/241 (35%), Gaps = 18/241 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR ++R I + GS L + G T +L+ +L E + I
Sbjct: 319 RVDGRTAAEIRPIMVKGDYLPLVHGSGLFQRGQTQVLSVLSLGMLNEGQRLDTIEPVDGK 378
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P TG + R+ G RAL V+ I + +
Sbjct: 379 RYMHHYNFPPYCTGETGRMGTPKRREIGHGNL----AERALIPVLPDENEFPYAIRVVSE 434
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
V++++G + A+ G+ +AL D ++ + + + + + +
Sbjct: 435 VMESNGSSSMASTCGSCLALMDGGVPIKRPVSGIAMGLIQEEGKTVVLSD---------I 485
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T+ G I +Q + + D L AK+ A ++ +V
Sbjct: 486 QGLEDFLGDMDFKVTGTEKG-ITALQMDNKATGLTFDILRTALEQAKEGRAYILDKMLEV 544
Query: 238 I 238
+
Sbjct: 545 V 545
Score = 93.8 bits (231), Expect = 2e-17, Method: Composition-based stats.
Identities = 44/229 (19%), Positives = 73/229 (31%), Gaps = 24/229 (10%)
Query: 16 LTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKV---PMWIRNTKHGWITAEYGMLPRSTG 71
++K A G+ LVK GD+ +LTT + ++ + G +P
Sbjct: 17 FEVGELAKQATGAALVKQGDSTVLTTVVVSKERKNYDFFPLTVDFNEKMYAAGRIPGGYL 76
Query: 72 NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAIT 131
R GR ++ RMI R +R Q++ V +
Sbjct: 77 KR------EGRPSEKATLTARMIDRPIRPSFPDGFRNEVQVVATSLVADQKNPVDVICVM 130
Query: 132 GAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANF 191
GA +A+ E + I G IV+ Y E D+D
Sbjct: 131 GASLAMTIGGVPFEGPLACVR-----------IGRDKETGEFIVNPTYEERENSDLDLEL 179
Query: 192 VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
T I V+ AE S++ A + ++ I Q + +
Sbjct: 180 AGTRDF-ISMVEAGAEE--VSEEDMLAAMQFGQEAIGAFCDAQLEFVEE 225
>gi|291276965|ref|YP_003516737.1| polyribonucleotide nucleotidyltransferase [Helicobacter mustelae
12198]
gi|290964159|emb|CBG40004.1| polyribonucleotide nucleotidyltransferase [Helicobacter mustelae
12198]
Length = 693
Score = 135 bits (340), Expect = 4e-30, Method: Composition-based stats.
Identities = 41/243 (16%), Positives = 89/243 (36%), Gaps = 23/243 (9%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT------ 54
+R GR+ ++R IS+ + +A GS L G T L ATL + R
Sbjct: 316 IRADGRKTTEVRPISIETNILPFAHGSVLFTRGQTQSLVVATLGSENDAQTRENLNDSIP 375
Query: 55 KHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIII 114
+ T Y S G + +V R+ G ++ + ++ R + +
Sbjct: 376 QKENFTFHYNFPGFSVGEALMIGSVGRRELGHGNLAKKALEDSIIEK-------DRTLRL 428
Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPI 174
++++++G + A++ G +A+ C + + +G A+ ++
Sbjct: 429 VSEILESNGSSSMASVCGGSLAICACGMESSGLVAGVAMGLIKEGSEYAVLTDIM----- 483
Query: 175 VDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
ED D+D ++ I +Q + L A+D ++++
Sbjct: 484 ----GLEDHDGDMDFKVAGNENF-ITAMQMDIKLGGLELGILKEALYQARDARLHILQIM 538
Query: 235 KDV 237
++
Sbjct: 539 QEA 541
Score = 87.6 bits (215), Expect = 1e-15, Method: Composition-based stats.
Identities = 36/228 (15%), Positives = 79/228 (34%), Gaps = 26/228 (11%)
Query: 20 VSKYAEGSCLVKFGDTHLLTTATLEE---KVPMWIRNTKHGWITAEYGMLPRSTGNRVKR 76
V+K A GS L + G T +L + +++ + + ++ + G +P R
Sbjct: 20 VAKQASGSVLYERGGTVILASVAIDDKDVEGDFLPLSVQYIEKSYATGKIPGGFIKR--- 76
Query: 77 EAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVA 136
G+ G R+I R LR + + I + + + A+ A
Sbjct: 77 ---EGKPGEFETLTSRIIDRTLRPLFPKHYRKTTHISVFVLSYDGESDLQVCALNAA--- 130
Query: 137 LHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDS 196
+ + AA+ G + G +++ E + +D
Sbjct: 131 ----------ANALLLSAAPFCVPTAAVRIGRIDGVFVLNPSRSELANSALDLYISG-SF 179
Query: 197 GHIVEVQGSA---ERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
G ++ ++ + + +++ + LAK I +L L + I+
Sbjct: 180 GDLLMIEMKGGSTKESGINEEELLEAITLAKAHIQELSSLYEQNIAPH 227
>gi|298490374|ref|YP_003720551.1| polyribonucleotide nucleotidyltransferase ['Nostoc azollae' 0708]
gi|298232292|gb|ADI63428.1| polyribonucleotide nucleotidyltransferase ['Nostoc azollae' 0708]
Length = 718
Score = 135 bits (340), Expect = 4e-30, Method: Composition-based stats.
Identities = 49/245 (20%), Positives = 91/245 (37%), Gaps = 20/245 (8%)
Query: 1 MRLSGRQENQMREISLTRRVSK-YAEGSCLVKFGDTHLLTTATLE-----EKVPMWIRNT 54
+R+ GR+ +Q+R +S V GS L G T +L+ TL + + ++
Sbjct: 322 VRVDGRKLDQVRPVSCQVNVLPKRVHGSGLFNRGLTQVLSCCTLGTPGDAQNLNDDLQVD 381
Query: 55 KHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIII 114
+H Y P S G A R+ G RA+ V+ I +
Sbjct: 382 QHKRYLHHYNFPPFSVGETKPMRAPGRREIGHGAL----AERAILPVLPPKEQFPYVIRV 437
Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPI 174
+V+ ++G T ++ G+ +AL D + + + + +G +
Sbjct: 438 VSEVLSSNGSTSMGSVCGSTLALMDAGVPILKPVSGAAMGLIKEGDEVRVLTD------- 490
Query: 175 VDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
+ ED D+D TDSG I +Q + + S + ++ AK +++
Sbjct: 491 --IQGIEDFLGDMDFKVAGTDSG-ITALQMDMKISGLSLEVIAQAVHQAKAARLNILDKM 547
Query: 235 KDVIS 239
I
Sbjct: 548 LQTIE 552
Score = 100 bits (249), Expect = 1e-19, Method: Composition-based stats.
Identities = 50/235 (21%), Positives = 86/235 (36%), Gaps = 26/235 (11%)
Query: 10 QMREISLTRRV-SKYAEGSCLVKFGDTHLLTTAT---LEEKVPMWIRNTKHGWITAEYGM 65
R+I L + + A GS L++ GDT +L TAT E + + G
Sbjct: 11 DGRDIRLKVGLLAPQAGGSVLIESGDTAVLVTATRSQAREGIDFLPLTVDYEERLYAAGR 70
Query: 66 LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125
+P R GR R+ R+I R LR + Q+I +
Sbjct: 71 IPGGIMRR------EGRPPERAILTSRLIDRPLRPLFPSWLRDDLQVIAFTLSMDEQVPP 124
Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185
A+TGA +A G +AA+ G++ I++ Y E
Sbjct: 125 DVLAVTGASIAT-------------LIAQIPFNGPMAAVRVGLVGDDFIINPTYAEIDAG 171
Query: 186 DVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
D+D + G ++ V+ A + + ++ + + DLI+ Q D++
Sbjct: 172 DLDLIVAGSPDG-VIMVEAGANQ--LPERDIIEAIDFGYEAVRDLIQAQLDLVEE 223
>gi|282866915|ref|ZP_06275947.1| guanosine pentaphosphate synthetase I/polyribonucleotide
nucleotidyltransferase [Streptomyces sp. ACTE]
gi|282558228|gb|EFB63798.1| guanosine pentaphosphate synthetase I/polyribonucleotide
nucleotidyltransferase [Streptomyces sp. ACTE]
Length = 737
Score = 135 bits (340), Expect = 4e-30, Method: Composition-based stats.
Identities = 39/242 (16%), Positives = 81/242 (33%), Gaps = 14/242 (5%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
+R+ GR +R ++ GS L + G+T +L TL E+ +
Sbjct: 338 VRIDGRGVTDIRTLAAEVEAIPRVHGSALFERGETQILGVTTLNMLRMEQQLDTLSPVTR 397
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P S G + + R+ G RA+ V+ I
Sbjct: 398 KRYMHNYNFPPYSVGETGRVGSPKRREIGHGAL----AERAIVPVLPSREEFPYAIRQVS 453
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+ + ++G T ++ + ++L + ++ + + + G + D
Sbjct: 454 EALGSNGSTSMGSVCASTMSLLNAGVPLKAAVAGIAMGLISQEID-----GKTHYVALTD 508
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED+ D+D T + +Q + A L A+D ++ + +
Sbjct: 509 ILGAEDAFGDMDFKVAGTKQF-VTALQLDTKLDGIPASVLAAALKQARDARLHILDVMNE 567
Query: 237 VI 238
I
Sbjct: 568 AI 569
Score = 83.0 bits (203), Expect = 4e-14, Method: Composition-based stats.
Identities = 44/243 (18%), Positives = 68/243 (27%), Gaps = 39/243 (16%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGD-THLLTTATLEEKVPMWIRNT----KHGWITAEYGM 65
R I ++K A GS + D T +L+ T ++ + G
Sbjct: 20 RTIRFETGRLAKQAAGSAVAYLDDDTMVLSATTASKRPKDQLDFFPLTVDVEERQYAAGK 79
Query: 66 LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125
+P S R GR + R+I R LR QI+ + D
Sbjct: 80 IPGSFFRR------EGRPSEDAILTCRLIDRPLRPSFKKGLRNEIQIVETIMALNPDHLY 133
Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185
AI A + G + A ++ G + + E
Sbjct: 134 DVVAINAASASTILAG-------------LPFSGPIGATRVALIKGQWVAFPTHTELEDA 180
Query: 186 DVDANFVMT----DSGHIVEVQGSAERATF----------SQDHFFAMLNLAKDRIADLI 231
D I+ V+ A T +++ A L AK I L
Sbjct: 181 VFDMVVAGRVLEDGDVAIMMVEAEATEKTIQLVKDGAEAPTEEVVAAGLEAAKPFIKALC 240
Query: 232 KLQ 234
K Q
Sbjct: 241 KAQ 243
>gi|148273228|ref|YP_001222789.1| polynucleotide phosphorylase/polyadenylase [Clavibacter
michiganensis subsp. michiganensis NCPPB 382]
gi|187610254|sp|A5CSN9|PNP_CLAM3 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|147831158|emb|CAN02110.1| putative polyribonucleotide nucleotidyltransferase [Clavibacter
michiganensis subsp. michiganensis NCPPB 382]
Length = 757
Score = 135 bits (340), Expect = 4e-30, Method: Composition-based stats.
Identities = 41/242 (16%), Positives = 80/242 (33%), Gaps = 14/242 (5%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
+R+ GR +R + +V GS + + G+T +L TL E+ +
Sbjct: 349 VRMDGRGLADIRPLDAEVQVIPRVHGSAIFQRGETQILGVTTLNMLKMEQQIDSLSPITK 408
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P STG + + R+ G RAL V+ I
Sbjct: 409 KRYLHHYNFPPYSTGETGRVGSPKRREIGHGFL----AERALVPVLPSREDFPYAIRQVS 464
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+ + ++G T ++ + ++L + + + V G + + D
Sbjct: 465 EALGSNGSTSMGSVCASTLSLLNAGVPLRAPVAGIAMGLVSD-----TVDGQVRYAALTD 519
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED+ D+D T + +Q + L AK+ ++ +
Sbjct: 520 ILGAEDALGDMDFKVAGTSEF-VTAIQLDTKLDGIPTSVLDGALKQAKEARTAILGVLNQ 578
Query: 237 VI 238
I
Sbjct: 579 AI 580
>gi|291448178|ref|ZP_06587568.1| polynucleotide phosphorylase/polyadenylase [Streptomyces
roseosporus NRRL 15998]
gi|291351125|gb|EFE78029.1| polynucleotide phosphorylase/polyadenylase [Streptomyces
roseosporus NRRL 15998]
Length = 742
Score = 135 bits (340), Expect = 4e-30, Method: Composition-based stats.
Identities = 39/242 (16%), Positives = 81/242 (33%), Gaps = 14/242 (5%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
+R+ GR +R ++ GS L + G+T +L TL E+ +
Sbjct: 343 VRIDGRGVTDIRTLAAEVEAIPRVHGSALFERGETQILGVTTLNMLRMEQQLDTLSPVTR 402
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P S G + + R+ G RA+ V+ I
Sbjct: 403 KRYMHNYNFPPYSVGETGRVGSPKRREIGHGAL----AERAIVPVLPTREEFPYAIRQVS 458
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+ + ++G T ++ + ++L + ++ + + + G + D
Sbjct: 459 EALGSNGSTSMGSVCASTMSLLNAGVPLKAAVAGIAMGLISQEID-----GKTHYVALTD 513
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED+ D+D T + +Q + A L A+D ++ + +
Sbjct: 514 ILGAEDAFGDMDFKVAGTKQF-VTALQLDTKLDGIPASVLAAALKQARDARLHILDVMNE 572
Query: 237 VI 238
I
Sbjct: 573 AI 574
Score = 83.7 bits (205), Expect = 2e-14, Method: Composition-based stats.
Identities = 46/250 (18%), Positives = 74/250 (29%), Gaps = 40/250 (16%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGD-THLLTTATLEEKVPMWIRNT----KHGWITAEYGM 65
R I ++K A GS + D T +L+ T ++ + G
Sbjct: 25 RTIRFETGRLAKQAAGSAVAYLDDDTMVLSATTASKRPKDNLDFFPLTVDVEERQYAAGK 84
Query: 66 LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125
+P S R GR + R+I R LR S QI+ + D
Sbjct: 85 IPGSFFRR------EGRPSEDAILTCRLIDRPLRPSFKKSLRNEIQIVETVMALNPDHLY 138
Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185
AI A + G + A ++ G + + E
Sbjct: 139 DVVAINAASCSTQLAG-------------LPFSGPIGATRVALIKGQWVAFPTHTELEDA 185
Query: 186 DVDANFVMT----DSGHIVEVQGSAERATF----------SQDHFFAMLNLAKDRIADLI 231
D I+ V+ A T +++ A L AK I L
Sbjct: 186 VFDMVVAGRVLEDGDVAIMMVEAEATEKTIQLVKDGAEAPTEEIVAAGLEAAKPFIKTLC 245
Query: 232 KLQKDVISNE 241
K Q D ++++
Sbjct: 246 KAQSD-LASK 254
>gi|254458763|ref|ZP_05072187.1| 3' exoribonuclease family, domain 2, protein [Campylobacterales
bacterium GD 1]
gi|207084529|gb|EDZ61817.1| 3' exoribonuclease family, domain 2, protein [Campylobacterales
bacterium GD 1]
Length = 727
Score = 135 bits (340), Expect = 4e-30, Method: Composition-based stats.
Identities = 52/243 (21%), Positives = 87/243 (35%), Gaps = 23/243 (9%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIR------NT 54
+R GR ++R IS++ V A SCL G+T L T+ + T
Sbjct: 346 VRADGRALTEVRPISISTNVLPKAHSSCLFTRGETQALVVLTMGGPKDAQMFESLTDAGT 405
Query: 55 KHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIII 114
++ Y S G R+ G RAL +VDL + + +
Sbjct: 406 QNENFMVHYNFPGFSVGEASPIMGTKRRELGHGNL----AKRALEPIVDLD---GQTVRL 458
Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPI 174
++++++G + A + G ++AL D + V G AI ++
Sbjct: 459 VSEILESNGSSSMATVCGGYMALRAADIDTSDTVAGIAMGMVSDGDKYAILSDIM----- 513
Query: 175 VDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
ED D+D + G I +Q + S D L AKD + +I +
Sbjct: 514 ----GLEDHDGDMDFKVTGSKDG-ITAMQMDIKLGGISLDILKEALYQAKDGRSHIIDIM 568
Query: 235 KDV 237
D
Sbjct: 569 IDA 571
Score = 61.8 bits (148), Expect = 8e-08, Method: Composition-based stats.
Identities = 28/204 (13%), Positives = 63/204 (30%), Gaps = 26/204 (12%)
Query: 19 RVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----HGWITAEYGMLPRSTGNRV 74
V++ A GS +K GD+ +L T ++E + + T G +P R
Sbjct: 20 DVARQANGSAWLKSGDSVILATVVIDETEIVKDDFLPLTVQYIEKTYAAGKIPGGFFKR- 78
Query: 75 KREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAW 134
+ R++ R+LR + QI I +
Sbjct: 79 -----ETKPSDFETLTSRIVDRSLRPLFPKGFGHPTQITIMV-------------FSAGS 120
Query: 135 VALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMT 194
A L + + + V+A+ + G +++ + +D T
Sbjct: 121 DADLQVLALNAASAALYTSDIDINTSVSAVRAAKVDGELVLNPTLSQLKEATLDLYLSGT 180
Query: 195 DSGHIVEVQGSAERATFSQDHFFA 218
++ ++ + + ++
Sbjct: 181 KDD-LLMIEMRSFGS--NETQIEE 201
>gi|182435576|ref|YP_001823295.1| polynucleotide phosphorylase/polyadenylase [Streptomyces griseus
subsp. griseus NBRC 13350]
gi|326776210|ref|ZP_08235475.1| Polyribonucleotide nucleotidyltransferase [Streptomyces cf. griseus
XylebKG-1]
gi|226702691|sp|B1VXZ6|PNP_STRGG RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|178464092|dbj|BAG18612.1| putative guanosine pentaphosphate synthetase/polyribonucleotide
nucleotidyltransferase alpha chain [Streptomyces griseus
subsp. griseus NBRC 13350]
gi|326656543|gb|EGE41389.1| Polyribonucleotide nucleotidyltransferase [Streptomyces cf. griseus
XylebKG-1]
Length = 737
Score = 135 bits (340), Expect = 4e-30, Method: Composition-based stats.
Identities = 39/242 (16%), Positives = 81/242 (33%), Gaps = 14/242 (5%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
+R+ GR +R ++ GS L + G+T +L TL E+ +
Sbjct: 338 VRIDGRGVTDIRTLAAEVEAIPRVHGSALFERGETQILGVTTLNMLRMEQQLDTLSPVTR 397
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P S G + + R+ G RA+ V+ I
Sbjct: 398 KRYMHNYNFPPYSVGETGRVGSPKRREIGHGAL----AERAIVPVLPTREEFPYAIRQVS 453
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+ + ++G T ++ + ++L + ++ + + + G + D
Sbjct: 454 EALGSNGSTSMGSVCASTMSLLNAGVPLKAAVAGIAMGLISQEID-----GKTHYVALTD 508
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED+ D+D T + +Q + A L A+D ++ + +
Sbjct: 509 ILGAEDAFGDMDFKVAGTKQF-VTALQLDTKLDGIPASVLAAALKQARDARLHILDVMNE 567
Query: 237 VI 238
I
Sbjct: 568 AI 569
Score = 83.7 bits (205), Expect = 2e-14, Method: Composition-based stats.
Identities = 45/250 (18%), Positives = 74/250 (29%), Gaps = 40/250 (16%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGD-THLLTTATLEEKVPMWIRNT----KHGWITAEYGM 65
R I ++K A GS + D T +L+ T ++ + G
Sbjct: 20 RTIRFETGRLAKQAAGSAVAYLDDDTMVLSATTASKRPKDNLDFFPLTVDVEERQYAAGK 79
Query: 66 LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125
+P S R GR + R+I R LR QI+ + D
Sbjct: 80 IPGSFFRR------EGRPSEDAILTCRLIDRPLRPSFKKGLRNEIQIVETIMALNPDHLY 133
Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185
AI A + G + A ++ G + + E
Sbjct: 134 DVVAINAASCSTILAG-------------LPFSGPIGATRVALIKGQWVAFPTHTELEDA 180
Query: 186 DVDANFVMT----DSGHIVEVQGSAERATF----------SQDHFFAMLNLAKDRIADLI 231
D I+ V+ A T +++ A L+ AK I L
Sbjct: 181 VFDMVVAGRVLEDGDVAIMMVEAEATEKTIQLVKDGAEAPTEEIVAAGLDAAKPFIKALC 240
Query: 232 KLQKDVISNE 241
K Q D ++++
Sbjct: 241 KAQSD-LASK 249
>gi|303238032|ref|ZP_07324575.1| polyribonucleotide nucleotidyltransferase [Prevotella disiens
FB035-09AN]
gi|302481822|gb|EFL44874.1| polyribonucleotide nucleotidyltransferase [Prevotella disiens
FB035-09AN]
Length = 739
Score = 135 bits (340), Expect = 4e-30, Method: Composition-based stats.
Identities = 45/243 (18%), Positives = 83/243 (34%), Gaps = 18/243 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHG 57
R+ GR +++R I GS + G+T L T T L+EK+ + + +
Sbjct: 316 RMDGRACDEIRPIWCEVDPLPMPHGSAYFQRGETLALATCTLGTKLDEKMVDNVLDKSYQ 375
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P TG + V R+ G R L+ ++ + +
Sbjct: 376 RFLLHYNFPPFCTGEAKAQRGVGRREIGHGHL----AWRGLKGMIP--EDFPYTVRLVSQ 429
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
V++++G + A + +AL D ++ + + + G + D+
Sbjct: 430 VLESNGSSSMATVCSGTLALMDAGVPIKKPVSGIAMGLIKN-------PGEDKYAVLSDI 482
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T G I Q + S + L AK ++ +
Sbjct: 483 LGDEDHLGDMDFKTTGTRDG-ITATQMDIKCDGLSFEILEKALMQAKQAREFILDKITET 541
Query: 238 ISN 240
I
Sbjct: 542 IPE 544
Score = 104 bits (260), Expect = 9e-21, Method: Composition-based stats.
Identities = 35/234 (14%), Positives = 76/234 (32%), Gaps = 20/234 (8%)
Query: 10 QMREISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPR 68
R I++ V+K A+G+ +++ G+T LL T ++ E
Sbjct: 3 DGRNITIETGKVAKQADGAAVLRMGNTVLLATVCAAKEAVPGTDFMPLQVDYREQYSAAG 62
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
G+ R++ R LR + + +
Sbjct: 63 RFP--GGFTKREGKANDDEILTSRLVDRVLRPLFPSDYHTEVFVSVMLLSADGVDMPDAL 120
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A A A+ ++ ++ + + G I++ + + D+D
Sbjct: 121 AGFAASAAMQC-------------SDIPIEHPISEVRVARVNGEYIINPTFEQMKEADMD 167
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNEV 242
T +I+ V+ E S+ L A D I + ++Q++ ++ E+
Sbjct: 168 IMVGATKD-NIMMVE--GEMEEVSEQDLIDALKAAHDAIKPMCEIQEE-LAKEL 217
>gi|184201241|ref|YP_001855448.1| polynucleotide phosphorylase/polyadenylase [Kocuria rhizophila
DC2201]
gi|226702657|sp|B2GKI3|PNP_KOCRD RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|183581471|dbj|BAG29942.1| guanosine pentaphosphate synthetase/polynucleotide phosphorylase
[Kocuria rhizophila DC2201]
Length = 751
Score = 135 bits (340), Expect = 4e-30, Method: Composition-based stats.
Identities = 43/242 (17%), Positives = 85/242 (35%), Gaps = 14/242 (5%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
+R+ GR +R++S V GS L + G+T ++ TL E+ + KH
Sbjct: 352 VRIDGRGLTDIRQLSAEVDVLPRVHGSALFERGETQIMGVTTLNMLKMEQQIDSLSPVKH 411
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P STG + + R+ G RA+ V+ I
Sbjct: 412 KRYIHHYNFPPYSTGETGRVGSPKRREIGHGAL----AERAITPVLPSREEFPYAIRQVS 467
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+ + ++G T ++ + +AL++ + + V G + + D
Sbjct: 468 EALGSNGSTSMGSVCASTLALYNAGVPLRAPVAGIAMGLVSD-----TVDGEVQYAALTD 522
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED+ D+D T + +Q + + L A++ ++ +
Sbjct: 523 ILGAEDALGDMDFKVAGTREF-VTAIQLDTKLDGIPASVLASALTQAREARLYILDVLTS 581
Query: 237 VI 238
I
Sbjct: 582 AI 583
Score = 70.3 bits (170), Expect = 2e-10, Method: Composition-based stats.
Identities = 38/240 (15%), Positives = 70/240 (29%), Gaps = 23/240 (9%)
Query: 12 REISLTRR-VSKYAEGSCLVKFG-DTHLL-TTATL---EEKVPMWIRNTKHGWITAEYGM 65
R + +++ A GS +V +T +L TA E + G
Sbjct: 21 RVVRFETGRLARQAAGSAMVYIDEETSMLSATAVGKHPREGFDFFPLTVDVEERMYAAGR 80
Query: 66 LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125
+P S R GR + R+I R LR Q+++ I D
Sbjct: 81 IPGSFFRR------EGRPSTDAILTCRLIDRPLRPAFGKGLRNEVQVVVTVMSIAPDEIY 134
Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185
T AI A ++ + +++ + + + + + +
Sbjct: 135 NTVAINAASMSTTLSGMPFQGPVGGVRMALMAEENGGHQWIAFPKHSQLENAVFDMAVAG 194
Query: 186 DVDANFVMTDSGHIVEVQGSAERATF-----------SQDHFFAMLNLAKDRIADLIKLQ 234
V I+ V+ A + S++ L +K I L Q
Sbjct: 195 RVVTTKDGGQDVAIMMVEAEATDNAWELIKGQGAVAPSEELVAEGLEASKPFIKALCDAQ 254
>gi|74184409|dbj|BAE25732.1| unnamed protein product [Mus musculus]
Length = 783
Score = 135 bits (340), Expect = 4e-30, Method: Composition-based stats.
Identities = 49/247 (19%), Positives = 87/247 (35%), Gaps = 17/247 (6%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE--------EKVPMWIRN 53
R GR +R IS + K GS L + G T +L T T + +++ I
Sbjct: 358 RCDGRDLTSLRNISCEVDMFKTLHGSALFQRGQTQVLCTVTFDSLESSIKSDQIITAING 417
Query: 54 TKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQII 113
K Y P +T K V+ R+ G +AL V+ I
Sbjct: 418 VKDKNFMLHYEFPPYATNETGKVTGVNRRELGHGAL----AEKALCPVIPKDFPF--TIR 471
Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP 173
+ +V++++G + A+ G +AL D + + V K + +
Sbjct: 472 VTSEVLESNGSSSMASACGGSLALMDAGVPISSAVAGVAVGLVTKTNP--EKGEIEDYRL 529
Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
+ D+ ED D+D T+ G I +Q + + A +++++
Sbjct: 530 LTDILGIEDYNGDMDFKIAGTNKG-ITALQADIKLPGVPIKIIMEAIQQASVAKKEILQI 588
Query: 234 QKDVISN 240
IS
Sbjct: 589 MNKTISK 595
Score = 71.0 bits (172), Expect = 1e-10, Method: Composition-based stats.
Identities = 40/218 (18%), Positives = 77/218 (35%), Gaps = 25/218 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTA---TLEEKVPMWIRNTKHGWITAEYGMLP 67
R++ ++ ++++A+G +++ GDT ++ TA T + A G +P
Sbjct: 54 RKLEISSGKLARFADGCAVIQSGDTAVMVTAVSKTKPSPSQFMPLVVDYRQKAAAAGRIP 113
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
+ R R R+I R++R + Q++ + +
Sbjct: 114 TNYLRREIGS------SDREVLTSRVIDRSIRPLFPAGYFYDTQVLCNLLAVDGINEPDI 167
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
A+ GA VA G V A+ GM+ G +V+ E S+ +
Sbjct: 168 LAVNGASVA-------------LSLSDIPWNGPVGAVRIGMIDGECVVNPTRREMSSSTL 214
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKD 225
+ IV ++ SAE Q F + +
Sbjct: 215 NLVVAGAPKSQIVMLEASAEN--ILQQDFCHAIKVGVK 250
>gi|239944720|ref|ZP_04696657.1| polynucleotide phosphorylase/polyadenylase [Streptomyces
roseosporus NRRL 15998]
Length = 737
Score = 135 bits (340), Expect = 5e-30, Method: Composition-based stats.
Identities = 39/242 (16%), Positives = 81/242 (33%), Gaps = 14/242 (5%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
+R+ GR +R ++ GS L + G+T +L TL E+ +
Sbjct: 338 VRIDGRGVTDIRTLAAEVEAIPRVHGSALFERGETQILGVTTLNMLRMEQQLDTLSPVTR 397
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P S G + + R+ G RA+ V+ I
Sbjct: 398 KRYMHNYNFPPYSVGETGRVGSPKRREIGHGAL----AERAIVPVLPTREEFPYAIRQVS 453
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+ + ++G T ++ + ++L + ++ + + + G + D
Sbjct: 454 EALGSNGSTSMGSVCASTMSLLNAGVPLKAAVAGIAMGLISQEID-----GKTHYVALTD 508
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED+ D+D T + +Q + A L A+D ++ + +
Sbjct: 509 ILGAEDAFGDMDFKVAGTKQF-VTALQLDTKLDGIPASVLAAALKQARDARLHILDVMNE 567
Query: 237 VI 238
I
Sbjct: 568 AI 569
Score = 83.7 bits (205), Expect = 2e-14, Method: Composition-based stats.
Identities = 46/250 (18%), Positives = 74/250 (29%), Gaps = 40/250 (16%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGD-THLLTTATLEEKVPMWIRNT----KHGWITAEYGM 65
R I ++K A GS + D T +L+ T ++ + G
Sbjct: 20 RTIRFETGRLAKQAAGSAVAYLDDDTMVLSATTASKRPKDNLDFFPLTVDVEERQYAAGK 79
Query: 66 LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125
+P S R GR + R+I R LR S QI+ + D
Sbjct: 80 IPGSFFRR------EGRPSEDAILTCRLIDRPLRPSFKKSLRNEIQIVETVMALNPDHLY 133
Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185
AI A + G + A ++ G + + E
Sbjct: 134 DVVAINAASCSTQLAG-------------LPFSGPIGATRVALIKGQWVAFPTHTELEDA 180
Query: 186 DVDANFVMT----DSGHIVEVQGSAERATF----------SQDHFFAMLNLAKDRIADLI 231
D I+ V+ A T +++ A L AK I L
Sbjct: 181 VFDMVVAGRVLEDGDVAIMMVEAEATEKTIQLVKDGAEAPTEEIVAAGLEAAKPFIKTLC 240
Query: 232 KLQKDVISNE 241
K Q D ++++
Sbjct: 241 KAQSD-LASK 249
>gi|172040539|ref|YP_001800253.1| polynucleotide phosphorylase/polyadenylase [Corynebacterium
urealyticum DSM 7109]
gi|257096683|sp|B1VDC1|PNP_CORU7 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|171851843|emb|CAQ04819.1| polyribonucleotide nucleotidyltransferase [Corynebacterium
urealyticum DSM 7109]
Length = 765
Score = 135 bits (340), Expect = 5e-30, Method: Composition-based stats.
Identities = 43/242 (17%), Positives = 92/242 (38%), Gaps = 14/242 (5%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKH 56
R+ GR +R++ + ++ A GS L + G+T +L TL+ E+ +
Sbjct: 380 FRIDGRDHTSIRDLGIVVQLLPRAHGSALFERGETQILGVTTLDTLKMEQTIDSLGPETS 439
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P STG + + R+ G RAL V+ I
Sbjct: 440 KRYIHHYNFPPYSTGETGRVGSPKRREIGHGAL----AERALTPVLPSREEFPYTIRQVS 495
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+ + ++G T ++ + ++L++ ++ + V + + G + D
Sbjct: 496 EALGSNGSTSMGSVCASTLSLYNAGVPLKAPVAGIAMGLV-----SGLVDGKEKFVSLTD 550
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED+ D+D T ++ +Q + + + L A+ ++++L +D
Sbjct: 551 ILGAEDAFGDMDFKVAGTSE-YVTALQLDTKLDGLPSEVLASALGQARSARLEILQLMED 609
Query: 237 VI 238
I
Sbjct: 610 AI 611
Score = 69.5 bits (168), Expect = 4e-10, Method: Composition-based stats.
Identities = 41/254 (16%), Positives = 71/254 (27%), Gaps = 30/254 (11%)
Query: 12 REISLTRRV-SKYAEGSCLVKFGD-THLLTTATLE----EKVPMWIRNTKHGWITAEYGM 65
R + + ++ A+G+ + T LL+T T E + + G
Sbjct: 46 RTLRFETGLLARQADGAVTAYLDEDTILLSTTTASRSPREGIDFFPLTVDVEERMYSAGR 105
Query: 66 LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125
+P S R GR G + R+I R LR Q++I I +
Sbjct: 106 IPGSFFRR------EGRPGTDAILAARLIDRPLRPTFVKGLRNEVQVVITVMSIDPNEMY 159
Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185
AI GA + + +++ V+ V E
Sbjct: 160 DVLAINGASASTQLSGLPVSSSVGGVRMALVVDEEHPEGQWVAFPTREQVSQSVFELVVA 219
Query: 186 DVDANFVMTDSGH-------IVEVQGSAERATF----------SQDHFFAMLNLAKDRIA 228
G ++ V+ A ++ + AK IA
Sbjct: 220 GRVTEPAKGGRGKKSQPNVAVMMVEAGATDNVVERIAEGAPAPTEAVVAEGIEAAKPFIA 279
Query: 229 DLIKLQKDVISNEV 242
L Q + + V
Sbjct: 280 TLCAAQD-ALRDAV 292
>gi|170781592|ref|YP_001709924.1| polynucleotide phosphorylase/polyadenylase [Clavibacter
michiganensis subsp. sepedonicus]
gi|257096675|sp|B0RGW7|PNP_CLAMS RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|169156160|emb|CAQ01301.1| guanosine pentaphosphate synthetase/polyribonucleotide
nucleotidyltransferase [Clavibacter michiganensis subsp.
sepedonicus]
Length = 757
Score = 135 bits (340), Expect = 5e-30, Method: Composition-based stats.
Identities = 41/242 (16%), Positives = 80/242 (33%), Gaps = 14/242 (5%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
+R+ GR +R + +V GS + + G+T +L TL E+ +
Sbjct: 349 IRMDGRGLADIRPLDAEVQVIPRVHGSAIFQRGETQILGVTTLNMLKMEQQIDSLSPVTK 408
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P STG + + R+ G RAL V+ I
Sbjct: 409 KRFMTHYNFPPYSTGETGRVGSPKRREIGHGFL----AERALVPVLPSREDFPYAIRQVS 464
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+ + ++G T ++ + ++L + + + V G + + D
Sbjct: 465 EALGSNGSTSMGSVCASTLSLLNAGVPLRAPVAGIAMGLVSD-----TVDGQVRYAALTD 519
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED+ D+D T + +Q + L AK+ ++ +
Sbjct: 520 ILGAEDALGDMDFKVAGTSEF-VTAIQLDTKLDGIPTSVLDGALKQAKEARTAILGVLNQ 578
Query: 237 VI 238
I
Sbjct: 579 AI 580
>gi|25188204|ref|NP_082145.1| polyribonucleotide nucleotidyltransferase 1, mitochondrial
precursor [Mus musculus]
gi|71159797|sp|Q8K1R3|PNPT1_MOUSE RecName: Full=Polyribonucleotide nucleotidyltransferase 1,
mitochondrial; AltName: Full=3'-5' RNA exonuclease
OLD35; AltName: Full=PNPase old-35; AltName:
Full=Polynucleotide phosphorylase 1; Short=PNPase 1;
AltName: Full=Polynucleotide phosphorylase-like protein;
Flags: Precursor
gi|22799101|emb|CAD45436.1| polynucleotide phosphorylase-like protein [Mus musculus]
gi|33585810|gb|AAH55826.1| Polyribonucleotide nucleotidyltransferase 1 [Mus musculus]
gi|56208052|emb|CAI25081.1| polyribonucleotide nucleotidyltransferase 1 [Mus musculus]
gi|74143624|dbj|BAE28862.1| unnamed protein product [Mus musculus]
gi|148691866|gb|EDL23813.1| polyribonucleotide nucleotidyltransferase 1, isoform CRA_a [Mus
musculus]
Length = 783
Score = 135 bits (340), Expect = 5e-30, Method: Composition-based stats.
Identities = 49/247 (19%), Positives = 87/247 (35%), Gaps = 17/247 (6%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE--------EKVPMWIRN 53
R GR +R IS + K GS L + G T +L T T + +++ I
Sbjct: 358 RCDGRDLTSLRNISCEVDMFKTLHGSALFQRGQTQVLCTVTFDSLESSIKSDQIITAING 417
Query: 54 TKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQII 113
K Y P +T K V+ R+ G +AL V+ I
Sbjct: 418 VKDKNFMLHYEFPPYATNETGKVTGVNRRELGHGAL----AEKALCPVIPKDFPF--TIR 471
Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP 173
+ +V++++G + A+ G +AL D + + V K + +
Sbjct: 472 VTSEVLESNGSSSMASACGGSLALMDAGVPISSAVAGVAVGLVTKTNP--EKGEIEDYRL 529
Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
+ D+ ED D+D T+ G I +Q + + A +++++
Sbjct: 530 LTDILGIEDYNGDMDFKIAGTNKG-ITALQADIKLPGVPIKIIMEAIQQASVAKKEILQI 588
Query: 234 QKDVISN 240
IS
Sbjct: 589 MNKTISK 595
Score = 69.5 bits (168), Expect = 4e-10, Method: Composition-based stats.
Identities = 40/218 (18%), Positives = 77/218 (35%), Gaps = 25/218 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTA---TLEEKVPMWIRNTKHGWITAEYGMLP 67
R++ ++ ++++A+G +++ GDT ++ TA T + A G +P
Sbjct: 54 RKLEISSGKLARFADGCAVIQSGDTAVMVTAVSKTKASPSQFMPLVVDYRQKAAAAGRIP 113
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
+ R R R+I R++R + Q++ + +
Sbjct: 114 TNYLRREIGS------SDREVLTSRVIDRSIRPLFPAGYFYDTQVLCNLLAVDGINEPDI 167
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
A+ GA VA G V A+ GM+ G +V+ E S+ +
Sbjct: 168 LAVNGASVA-------------LSLSDIPWNGPVGAVRIGMIDGECVVNPTRREMSSSTL 214
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKD 225
+ IV ++ SAE Q F + +
Sbjct: 215 NLVVAGAPKSQIVMLEASAEN--ILQQDFCHAIKVGVK 250
>gi|239991184|ref|ZP_04711848.1| polynucleotide phosphorylase/polyadenylase [Streptomyces
roseosporus NRRL 11379]
Length = 737
Score = 135 bits (340), Expect = 5e-30, Method: Composition-based stats.
Identities = 39/242 (16%), Positives = 81/242 (33%), Gaps = 14/242 (5%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
+R+ GR +R ++ GS L + G+T +L TL E+ +
Sbjct: 338 VRIDGRGVTDIRTLAAEVEAIPRVHGSALFERGETQILGVTTLNMLRMEQQLDTLSPVTR 397
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P S G + + R+ G RA+ V+ I
Sbjct: 398 KRYMHNYNFPPYSVGETGRVGSPKRREIGHGAL----AERAIVPVLPTREEFPYAIRQVS 453
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+ + ++G T ++ + ++L + ++ + + + G + D
Sbjct: 454 EALGSNGSTSMGSVCASTMSLLNAGVPLKAAVAGIAMGLISQEID-----GKTHYVALTD 508
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED+ D+D T + +Q + A L A+D ++ + +
Sbjct: 509 ILGAEDAFGDMDFKVAGTKQF-VTALQLDTKLDGIPASVLAAALKQARDARLHILDVMNE 567
Query: 237 VI 238
I
Sbjct: 568 AI 569
Score = 84.5 bits (207), Expect = 1e-14, Method: Composition-based stats.
Identities = 45/250 (18%), Positives = 73/250 (29%), Gaps = 40/250 (16%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGD-THLLTTATLEEKVPMWIRNT----KHGWITAEYGM 65
R I ++K A GS + D T +L+ T ++ + G
Sbjct: 20 RTIRFETGRLAKQAAGSAVAYLDDDTMVLSATTASKRPKDNLDFFPLTVDVEERQYAAGK 79
Query: 66 LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125
+P S R GR + R+I R LR QI+ + D
Sbjct: 80 IPGSFFRR------EGRPSEDAILTCRLIDRPLRPSFKKGLRNEIQIVETVMALNPDHLY 133
Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185
AI A + G + A ++ G + + E
Sbjct: 134 DVVAINAASCSTQLAG-------------LPFSGPIGATRVALIKGQWVAFPTHTELEDA 180
Query: 186 DVDANFVMT----DSGHIVEVQGSAERATF----------SQDHFFAMLNLAKDRIADLI 231
D I+ V+ A T +++ A L AK I L
Sbjct: 181 VFDMVVAGRVLEDGDVAIMMVEAEATEKTIQLVKDGAEAPTEEIVAAGLEAAKPFIKTLC 240
Query: 232 KLQKDVISNE 241
K Q D ++++
Sbjct: 241 KAQSD-LASK 249
>gi|297156777|gb|ADI06489.1| polynucleotide phosphorylase/polyadenylase [Streptomyces
bingchenggensis BCW-1]
Length = 750
Score = 135 bits (340), Expect = 5e-30, Method: Composition-based stats.
Identities = 41/241 (17%), Positives = 81/241 (33%), Gaps = 14/241 (5%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +R ++ GS L + G+T +L TL E+ +
Sbjct: 339 RIDGRGVTDIRTLAAEVEAIPRVHGSALFERGETQILGVTTLNMLRMEQQLDTLAPETRK 398
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P STG + + R+ G RAL V+ I +
Sbjct: 399 RYMHNYNFPPYSTGETGRVGSPKRREIGHGAL----AERALLPVLPSREDFPYAIRQVSE 454
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ ++G T ++ + ++L + + + + + G + D+
Sbjct: 455 ALSSNGSTSMGSVCASTMSLLNAGVPLRAPVAGIAMGLISQEID-----GETHYVTLTDI 509
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED+ D+D T + + +Q + A L A+D ++ + +
Sbjct: 510 LGAEDAFGDMDFKVAGTKTF-VTALQLDTKLDGIPASVLAAALKQARDARLHILDVMNEA 568
Query: 238 I 238
I
Sbjct: 569 I 569
Score = 82.2 bits (201), Expect = 6e-14, Method: Composition-based stats.
Identities = 39/231 (16%), Positives = 67/231 (29%), Gaps = 15/231 (6%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGD-THLLTTATLEEKVPMWIRNT----KHGWITAEYGM 65
R I +++ A GS + D T +L+ T + + G
Sbjct: 20 RTIRFETGRLARQAAGSAVAYLDDDTMVLSATTASKNPKDQLDFFPLTVDVEERMYAAGR 79
Query: 66 LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125
+P S R GR + R+I R LR QI+ + D
Sbjct: 80 IPGSFFRR------EGRPSEDAILTCRLIDRPLRPSFKKGLRNEIQIVETIMALNPDHLY 133
Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP--IVDLDYGEDS 183
AI A + +++ + VA + L +V +
Sbjct: 134 DVVAINAASCSTQLAGLPFSGPIGGTRVALIRGQWVAFPTHSELEDAVFDMVVAGRVLED 193
Query: 184 TIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
+ +++ A +++ A L AK I L K Q
Sbjct: 194 GDVAIMMVEAEATDKTIQLVKDGAEAP-TEEVVAAGLEAAKPFIKVLCKAQ 243
>gi|139439612|ref|ZP_01773025.1| Hypothetical protein COLAER_02052 [Collinsella aerofaciens ATCC
25986]
gi|133774953|gb|EBA38773.1| Hypothetical protein COLAER_02052 [Collinsella aerofaciens ATCC
25986]
Length = 748
Score = 135 bits (340), Expect = 5e-30, Method: Composition-based stats.
Identities = 49/243 (20%), Positives = 90/243 (37%), Gaps = 18/243 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +++R I + GS L + G T +L+ +L E + I T+
Sbjct: 319 RVDGRAADEIRPIMVKDNYLPLVHGSGLFQRGQTQVLSVLSLGMLNEGQRLDTIEPTEGK 378
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P TG + + R+ G RAL V+ I + +
Sbjct: 379 RYMHHYNFPPFCTGETGRMGSPKRREIGHGNL----AERALLPVLPDENEFPYAIRVVSE 434
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
V++++G + A+ G+ +AL D ++ + + + + + +
Sbjct: 435 VMESNGSSSMASTCGSTLALMDGGVPIKRPVSGIAMGLIQEEGKTVVLSD---------I 485
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T G I +Q + + D L AK+ A +++ DV
Sbjct: 486 QGLEDFLGDMDFKVTGTTEG-ITALQMDNKATGLTFDILARALQQAKEGRAFILQKMLDV 544
Query: 238 ISN 240
I
Sbjct: 545 IPE 547
Score = 88.0 bits (216), Expect = 9e-16, Method: Composition-based stats.
Identities = 45/230 (19%), Positives = 76/230 (33%), Gaps = 24/230 (10%)
Query: 15 SLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKV---PMWIRNTKHGWITAEYGMLPRST 70
+ ++K A G+CLVK GDT +L T + ++ + G +P
Sbjct: 16 TFESGELAKQATGACLVKQGDTTMLDTVVVSKERKNYDFFPLTVDFNEKMYAAGRIPGGY 75
Query: 71 GNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAI 130
R GR ++ RMI R +R I+ V +
Sbjct: 76 LKR------EGRPSEKATLTARMIDRPIRPSFPEGFRNEVHIVATSLVADQVNPFDVINV 129
Query: 131 TGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDAN 190
GA +A+ E I + G IV+ Y E D+D
Sbjct: 130 MGASLAMTLGGVPFEGPLA-----------CVRIGRNVETGEFIVNPTYEERENSDLDLE 178
Query: 191 FVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
+ I V+ AE S+D A + ++ +A + Q + ++
Sbjct: 179 LGGSADF-ISMVEAGAEE--ISEDDMLAAMKFGQEALAAFCQAQVEFVAE 225
>gi|124027456|ref|YP_001012776.1| ribonuclease PH [Hyperthermus butylicus DSM 5456]
gi|254782534|sp|A2BKC0|ECX1_HYPBU RecName: Full=Probable exosome complex exonuclease 1
gi|123978150|gb|ABM80431.1| ribonuclease PH [Hyperthermus butylicus DSM 5456]
Length = 255
Score = 135 bits (340), Expect = 5e-30, Method: Composition-based stats.
Identities = 69/243 (28%), Positives = 107/243 (44%), Gaps = 23/243 (9%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKV-PMWIRNTKHGWI 59
+R GR Q+R I + V A+GS LV++G T ++ + P + I
Sbjct: 24 IRHDGRLPEQLRPIRMEVGVLSNADGSALVEYGGTRVIAAVYGPREAHPRHVALPDRAII 83
Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119
Y M P ST R + R E+ ++I AL +VV I + +V+
Sbjct: 84 RCRYHMAPFSTAERK-----TPAPTRREVELSKVIREALEAVVISELYPRTAIDVYMEVL 138
Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179
Q+DGGTRTAAIT A +AL D M D VA ++ G + G ++D+D
Sbjct: 139 QSDGGTRTAAITAASLALADAGIAMRDL-------------VAGVAVGKVDGVLVLDIDE 185
Query: 180 GEDSTIDVDANFVMTDS-GHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
ED+ + D M S ++ +Q + + D F L LA+ I + LQK+ +
Sbjct: 186 IEDNYAEADMPVAMAPSLDKVLLLQLNG---VLTHDEFVKALELARKGIQVIYNLQKEAL 242
Query: 239 SNE 241
+
Sbjct: 243 RKK 245
>gi|320008201|gb|ADW03051.1| guanosine pentaphosphate synthetase I/polyribonucleotide
nucleotidyltransferase [Streptomyces flavogriseus ATCC
33331]
Length = 737
Score = 135 bits (340), Expect = 5e-30, Method: Composition-based stats.
Identities = 39/242 (16%), Positives = 81/242 (33%), Gaps = 14/242 (5%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
+R+ GR +R ++ GS L + G+T +L TL E+ +
Sbjct: 338 VRIDGRGVTDIRTLAAEVEAIPRVHGSALFERGETQILGVTTLNMLRMEQQLDTLSPVTR 397
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P S G + + R+ G RA+ V+ I
Sbjct: 398 KRYMHNYNFPPYSVGETGRVGSPKRREIGHGAL----AERAIVPVLPSREEFPYAIRQVS 453
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+ + ++G T ++ + ++L + ++ + + + G + D
Sbjct: 454 EALGSNGSTSMGSVCASTMSLLNAGVPLKAAVAGIAMGLISQEID-----GKTHYVALTD 508
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED+ D+D T + +Q + A L A+D ++ + +
Sbjct: 509 ILGAEDAFGDMDFKVAGTKQF-VTALQLDTKLDGIPASVLAAALKQARDARLHILDVMNE 567
Query: 237 VI 238
I
Sbjct: 568 AI 569
Score = 83.0 bits (203), Expect = 4e-14, Method: Composition-based stats.
Identities = 44/243 (18%), Positives = 68/243 (27%), Gaps = 39/243 (16%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGD-THLLTTATLEEKVPMWIRNT----KHGWITAEYGM 65
R I ++K A GS + D T +L+ T ++ + G
Sbjct: 20 RTIRFETGRLAKQAAGSAVAYLDDDTMVLSATTASKRPKDQLDFFPLTVDVEERQYAAGK 79
Query: 66 LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125
+P S R GR + R+I R LR QI+ + D
Sbjct: 80 IPGSFFRR------EGRPSEDAILTCRLIDRPLRPSFKKGLRNEIQIVETIMALNPDHLY 133
Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185
AI A + G + A ++ G + + E
Sbjct: 134 DVVAINAASASTILAG-------------LPFSGPIGATRVALIKGQWVAFPTHTELEDA 180
Query: 186 DVDANFVMT----DSGHIVEVQGSAERATF----------SQDHFFAMLNLAKDRIADLI 231
D I+ V+ A T +++ A L AK I L
Sbjct: 181 VFDMVVAGRVLEDGDVAIMMVEAEATEKTIQLVKDGAEAPTEEVVAAGLEAAKPFIKTLC 240
Query: 232 KLQ 234
K Q
Sbjct: 241 KAQ 243
>gi|255524222|ref|ZP_05391181.1| Polyribonucleotide nucleotidyltransferase [Clostridium
carboxidivorans P7]
gi|296185343|ref|ZP_06853753.1| polyribonucleotide nucleotidyltransferase [Clostridium
carboxidivorans P7]
gi|255512047|gb|EET88328.1| Polyribonucleotide nucleotidyltransferase [Clostridium
carboxidivorans P7]
gi|296050177|gb|EFG89601.1| polyribonucleotide nucleotidyltransferase [Clostridium
carboxidivorans P7]
Length = 709
Score = 135 bits (339), Expect = 5e-30, Method: Composition-based stats.
Identities = 46/242 (19%), Positives = 87/242 (35%), Gaps = 16/242 (6%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHG 57
R GR ++R IS + G+ L G T ++T AT + ++ I + +
Sbjct: 312 RPDGRGFEEIRPISCEVGLLPRTHGTGLFTRGLTQVMTVATLGALGDVQILDGIGSEEFK 371
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y S G R+ G +AL ++ I + +
Sbjct: 372 RYMHHYNFPSYSVGEVRPLRGPGRREIGHGAL----AEKALEPLIPNEDNFPYTIRLVSE 427
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
V+ ++G T A++ G+ +AL D ++ + + + + + D+
Sbjct: 428 VLSSNGSTSQASVCGSTLALLDAGVPIKRPAAGIAMGLITSED-------LSKEKVLTDI 480
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T+ G I +Q + S D L+ A+ +++ D
Sbjct: 481 QGIEDFFGDMDFKVAGTEVG-ITAIQFDTKIHGLSNDCIKETLDKARKARLFILEKINDC 539
Query: 238 IS 239
IS
Sbjct: 540 IS 541
Score = 85.7 bits (210), Expect = 5e-15, Method: Composition-based stats.
Identities = 34/234 (14%), Positives = 75/234 (32%), Gaps = 27/234 (11%)
Query: 12 REISLTRRVSKYAEGSCL-VKFGDTHLLTTATLEEK----VPMWIRNTKHGWITAEYGML 66
R + + L V +G+T +L A EK V + + ++ G +
Sbjct: 12 RTLKIDFGKVGMLSNCALLVSYGETVVLINANASEKPREGVDFFPLSIEYEERLYAVGKI 71
Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
P R G+ ++ R I R LR + Q++ ++ D
Sbjct: 72 PGGFIKR------EGKPSEKAILHARAIDRPLRPLFPKGYRNDVQVVCTVVSVEQDNAPD 125
Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
AI GA +A S + A+S G++ +++ +
Sbjct: 126 ILAINGASIA-------------LSLSSIPFNTPLGAVSVGLVDDEFVINPTLEQRGKST 172
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
++ T ++ V+ +D + + + ++ Q++ +
Sbjct: 173 LNLTVCATKE-RVMMVEAGGSE--IPEDVMYDAIMFGFEECKKIVAFQEEAMEK 223
>gi|295836212|ref|ZP_06823145.1| polyribonucleotide nucleotidyltransferase [Streptomyces sp. SPB74]
gi|295825905|gb|EDY46178.2| polyribonucleotide nucleotidyltransferase [Streptomyces sp. SPB74]
Length = 739
Score = 135 bits (339), Expect = 5e-30, Method: Composition-based stats.
Identities = 41/241 (17%), Positives = 81/241 (33%), Gaps = 14/241 (5%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +R ++ GS L + G+T +L TL E+ +
Sbjct: 340 RIDGRGVTDIRTLAAEVEAIPRVHGSALFERGETQILGVTTLNMLRMEQQLDTLSPVTRK 399
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P STG + + R+ G RAL V+ I +
Sbjct: 400 RYMHNYNFPPYSTGETGRVGSPKRREIGHGAL----AERALVPVLPTREEFPYAIRQVSE 455
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ ++G T ++ + ++L + ++ + + + G + D+
Sbjct: 456 ALGSNGSTSMGSVCASTMSLLNAGVPLKAPVAGIAMGLISE-----THGGETHYVTLTDI 510
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED+ D+D T + +Q + A L A+D ++ + +
Sbjct: 511 LGAEDAFGDMDFKVAGTKEF-VTALQLDTKLDGIPASVLAAALKQARDARLHILDVMMEA 569
Query: 238 I 238
I
Sbjct: 570 I 570
Score = 78.3 bits (191), Expect = 9e-13, Method: Composition-based stats.
Identities = 40/240 (16%), Positives = 65/240 (27%), Gaps = 39/240 (16%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGD-THLLTTATLEEKVPMWIRNT----KHGWITAEYGM 65
R I ++K A GS + D T +L+ T + + G
Sbjct: 21 RTIRFETGRLAKQAAGSAVAYLDDDTMVLSATTASKNPKDQLDFFPLTVDVEERMYAAGK 80
Query: 66 LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125
+P S R GR + R+I R LR Q++ + D
Sbjct: 81 IPGSFFRR------EGRPSEDAILTCRLIDRPLRPSFKKGLRNEIQVVETIMALNPDHLY 134
Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185
AI A + G + ++ G + + E
Sbjct: 135 DVVAINAASCSTQLAG-------------LPFSGPIGGTRVALIKGQWVAFPTHTELEDA 181
Query: 186 DVDANFVMT----DSGHIVEVQGSAERATF----------SQDHFFAMLNLAKDRIADLI 231
D I+ V+ A T +++ A L+ AK I L
Sbjct: 182 VFDMVVAGRVLEDGDVAIMMVEAEATEKTIQLVAGGATAPTEEVVAAGLDAAKPFIKVLC 241
>gi|290957009|ref|YP_003488191.1| guanosine pentaphosphate synthetase/polyribonucleotide
nucleotidyltransferase [Streptomyces scabiei 87.22]
gi|260646535|emb|CBG69632.1| guanosine pentaphosphate synthetase/polyribonucleotide
nucleotidyltransferase [Streptomyces scabiei 87.22]
Length = 741
Score = 135 bits (339), Expect = 5e-30, Method: Composition-based stats.
Identities = 39/242 (16%), Positives = 81/242 (33%), Gaps = 14/242 (5%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
+R+ GR +R ++ GS L + G+T +L TL E+ +
Sbjct: 340 VRIDGRGVTDIRTLAAEVEAIPRVHGSALFERGETQILGVTTLNMLRMEQQLDTLSPVTR 399
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P S G + + R+ G RA+ V+ I
Sbjct: 400 KRYMHNYNFPPYSVGETGRVGSPKRREIGHGAL----AERAIVPVLPTREEFPYAIRQVS 455
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+ + ++G T ++ + ++L + ++ + + + G + D
Sbjct: 456 EALGSNGSTSMGSVCASTMSLLNAGVPLKAPVAGIAMGLISQEI-----NGETHYVALTD 510
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED+ D+D T + +Q + A L A+D ++ + +
Sbjct: 511 ILGAEDAFGDMDFKVAGTKEF-VTALQLDTKLDGIPASVLAAALKQARDARLHILDVMME 569
Query: 237 VI 238
I
Sbjct: 570 AI 571
Score = 86.4 bits (212), Expect = 3e-15, Method: Composition-based stats.
Identities = 46/240 (19%), Positives = 77/240 (32%), Gaps = 20/240 (8%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGD-THLLTTATLEEKVPMWIRNT----KHGWITAEYGM 65
R I +++ A GS + D T +L+ T + + G
Sbjct: 22 RTIRFETGRLARQAAGSAVAYLDDDTMVLSATTASKNPKDQLDFFPLTVDVEERMYAAGK 81
Query: 66 LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125
+P S R GR + R+I R LR Q++ + D
Sbjct: 82 IPGSFFRR------EGRPSEDAILTCRLIDRPLRPSFKKGLRNEIQVVATIMALNPDHLY 135
Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185
AI A + +++ + VA + L +
Sbjct: 136 DVVAINAASASTQLAGLPFSGPIGGVRVALINNQWVAFPTHTELEDAVFDMVV-AGRVLE 194
Query: 186 DVDANFVMTD----SGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
D D +M + I VQG AE +++ A L+ AK I L K Q D ++++
Sbjct: 195 DGDVAIMMVEAEATEKTIQLVQGGAEAP--TEEVVAAGLDAAKPFIKVLCKAQAD-LASK 251
>gi|167044981|gb|ABZ09646.1| putative 3' exoribonuclease family, domain 1 [uncultured marine
crenarchaeote HF4000_APKG8G2]
Length = 245
Score = 135 bits (339), Expect = 6e-30, Method: Composition-based stats.
Identities = 62/243 (25%), Positives = 100/243 (41%), Gaps = 23/243 (9%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKV-PMWIRNTKHGWI 59
+R GR+ N+ R++++ V K A+GS ++FG +L V P + N G +
Sbjct: 16 IRSDGRKVNETRKVTIKVGVLKNADGSAYIEFGGNKILAGVFGPRDVHPKHMSNPDTGIL 75
Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119
Y M P S R + R EI +++ AL V L I + +V+
Sbjct: 76 RVRYHMEPFSVSERK-----NPAPSRREIEISKVLKEALEPAVILEKFPRTAIDVYLEVL 130
Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179
QADGG+R AA+ A VAL D M D V + + G I+D++
Sbjct: 131 QADGGSRCAALDAASVALADAGIPMRD-------------MVCSCAAGKAADALILDVNN 177
Query: 180 GEDSTIDVDANF-VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
ED D M + G I +Q + D F + L + + ++QK+ +
Sbjct: 178 EEDQAGQADMPIGYMPNLGKITLLQLDG---VLTTDEFKKCIELGLEGCKQVYEIQKNAL 234
Query: 239 SNE 241
+
Sbjct: 235 REK 237
>gi|118087502|ref|XP_419282.2| PREDICTED: hypothetical protein [Gallus gallus]
Length = 728
Score = 135 bits (339), Expect = 6e-30, Method: Composition-based stats.
Identities = 45/247 (18%), Positives = 86/247 (34%), Gaps = 17/247 (6%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE--------EKVPMWIRN 53
R GR +R+I + K GS L + G T +L T T + + + +
Sbjct: 303 RCDGRDLTSLRDIKCEVNMFKMLHGSALFQRGQTQVLCTVTFDSIESSVKSDLISTAVSG 362
Query: 54 TKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQII 113
K Y P +T K V+ R+ G RAL+ V+ I
Sbjct: 363 IKDKNFMLHYEFPPYATNEIGKVTGVNRRELGHGAL----AERALKPVIPQDFPF--TIR 416
Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP 173
+ +V++++G + A+ G +AL D + + V K +
Sbjct: 417 VTSEVLESNGSSSMASACGGSLALMDAGVPVSSAVAGVAVGLVTKYDPEG--RDIEDYRL 474
Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
+ D+ ED D+D T G + +Q + + A +++++
Sbjct: 475 LTDILGIEDYYGDMDFKMAGTSKG-VTALQVDLKLPGIPIKIIMEAIQQATAAKREILQI 533
Query: 234 QKDVISN 240
+ ++
Sbjct: 534 MNETLAK 540
Score = 67.2 bits (162), Expect = 2e-09, Method: Composition-based stats.
Identities = 34/216 (15%), Positives = 72/216 (33%), Gaps = 24/216 (11%)
Query: 28 CLVKFGDTHLLTTA---TLEEKVPMWIRNTKHGWITAEYGMLPRSTGNRVKREAVSGRQG 84
L++ GDT ++ TA T + A G +P + R
Sbjct: 16 SLIQLGDTAVMVTAVSKTKPSASQFMPLVVDYRQKAAAAGRIPTNYLRR------ELGTT 69
Query: 85 GRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHM 144
+ R+I R++R + + QI+ + + AI GA A
Sbjct: 70 DKEILTSRVIDRSIRPLFPVGYFYDTQILCNLLAVDGVNDPDVLAINGASAA-------- 121
Query: 145 EDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQG 204
G V A+ G++ G +++ + S+ ++ +V ++
Sbjct: 122 -----LALSDIPWNGPVGAVRVGLVDGETVINPTRKQMSSSTLNLVVAAAPQNQVVMLEA 176
Query: 205 SAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
+AE Q F + + + +I+ + ++
Sbjct: 177 TAEN--ILQQDFCHAIKVGVKQTQHIIQGIQQLVKE 210
>gi|254393066|ref|ZP_05008227.1| polynucleotide phosphorylase/polyadenylase [Streptomyces
clavuligerus ATCC 27064]
gi|294815456|ref|ZP_06774099.1| Polyribonucleotide nucleotidyltransferase [Streptomyces
clavuligerus ATCC 27064]
gi|326443808|ref|ZP_08218542.1| polynucleotide phosphorylase/polyadenylase [Streptomyces
clavuligerus ATCC 27064]
gi|197706714|gb|EDY52526.1| polynucleotide phosphorylase/polyadenylase [Streptomyces
clavuligerus ATCC 27064]
gi|294328055|gb|EFG09698.1| Polyribonucleotide nucleotidyltransferase [Streptomyces
clavuligerus ATCC 27064]
Length = 739
Score = 135 bits (339), Expect = 6e-30, Method: Composition-based stats.
Identities = 39/242 (16%), Positives = 81/242 (33%), Gaps = 14/242 (5%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
+R+ GR +R ++ GS L + G+T +L TL E+ +
Sbjct: 338 VRIDGRGVTDIRTLAAEVEAIPRVHGSALFERGETQILGVTTLNMLRMEQQLDTLSPVTR 397
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P S G + + R+ G RA+ V+ I
Sbjct: 398 KRYMHNYNFPPYSVGETGRVGSPKRREIGHGAL----AERAIVPVLPSREEFPYAIRQVS 453
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+ + ++G T ++ + ++L + ++ + + + G + D
Sbjct: 454 EALGSNGSTSMGSVCASTMSLLNAGVPLKAPVAGIAMGLISQEID-----GKTHYVALTD 508
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED+ D+D T + +Q + A L A+D ++ + +
Sbjct: 509 ILGAEDAFGDMDFKVAGTKEF-VTALQLDTKLDGIPASVLAAALKQARDARLHILDVMME 567
Query: 237 VI 238
I
Sbjct: 568 AI 569
Score = 82.6 bits (202), Expect = 4e-14, Method: Composition-based stats.
Identities = 44/243 (18%), Positives = 67/243 (27%), Gaps = 39/243 (16%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGD-THLLTTATLEEKVPMWIRNT----KHGWITAEYGM 65
R I ++K A GS + D T +L+ T +K + G
Sbjct: 20 RTIRFETGRLAKQAAGSAVAYLDDDTMVLSATTASKKPKDQLDFFPLTVDVEERMYAAGK 79
Query: 66 LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125
+P S R GR + R+I R LR QI+ + D
Sbjct: 80 IPGSFFRR------EGRPSEDAILTCRLIDRPLRPSFKKGLRNEIQIVETIMALNPDHLY 133
Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185
AI A + G + ++ G + + E
Sbjct: 134 DVVAINAASCSTQLAG-------------LPFSGPIGGTRVALIKGQWVAFPTHTELEDA 180
Query: 186 DVDANFVMT----DSGHIVEVQGSAERATF----------SQDHFFAMLNLAKDRIADLI 231
D I+ V+ A T +++ A L AK I L
Sbjct: 181 VFDMVVAGRVLEDGDVAIMMVEAEATEKTVQLVKDGAEAPTEEVVAAGLEAAKPFIKVLC 240
Query: 232 KLQ 234
K Q
Sbjct: 241 KAQ 243
>gi|29829065|ref|NP_823699.1| polynucleotide phosphorylase/polyadenylase [Streptomyces
avermitilis MA-4680]
gi|81720032|sp|Q82K80|PNP_STRAW RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|29606171|dbj|BAC70234.1| putative guanosine pentaphosphate synthetase/polyribonucleotide
nucleotidyltransferase [Streptomyces avermitilis
MA-4680]
Length = 738
Score = 135 bits (339), Expect = 6e-30, Method: Composition-based stats.
Identities = 39/242 (16%), Positives = 81/242 (33%), Gaps = 14/242 (5%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
+R+ GR +R ++ GS L + G+T +L TL E+ +
Sbjct: 338 VRIDGRGVTDIRTLAAEVEAIPRVHGSALFERGETQILGVTTLNMLRMEQQLDTLSPVTR 397
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P S G + + R+ G RA+ V+ I
Sbjct: 398 KRYMHNYNFPPYSVGETGRVGSPKRREIGHGAL----AERAIVPVLPTREEFPYAIRQVS 453
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+ + ++G T ++ + ++L + ++ + + + G + D
Sbjct: 454 EALGSNGSTSMGSVCASTMSLLNAGVPLKAPVAGIAMGLISQEI-----NGETHYVALTD 508
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED+ D+D T + +Q + A L A+D ++ + +
Sbjct: 509 ILGAEDAFGDMDFKVAGTKEF-VTALQLDTKLDGIPASVLAAALKQARDARLHILDVMME 567
Query: 237 VI 238
I
Sbjct: 568 AI 569
Score = 78.0 bits (190), Expect = 1e-12, Method: Composition-based stats.
Identities = 41/240 (17%), Positives = 67/240 (27%), Gaps = 39/240 (16%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGD-THLLTTATLEEKVPMWIRNT----KHGWITAEYGM 65
R I ++K A GS + D T +L+ T +K + G
Sbjct: 20 RTIRFETGRLAKQAAGSAVAYLDDDTMVLSATTASKKPKENLDFFPLTVDVEERMYAAGK 79
Query: 66 LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125
+P S R GR + R+I R LR Q++ + D
Sbjct: 80 IPGSFFRR------EGRPSEDAILTCRLIDRPLRPSFKKGLRNEIQVVATIMALNPDHLY 133
Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185
AI A + G + + ++ G + + E
Sbjct: 134 DVVAINAASASTQLAG-------------LPFSGPIGGVRVALINGQWVAFPTHTELEDA 180
Query: 186 DVDANFVMT----DSGHIVEVQGSAERATF----------SQDHFFAMLNLAKDRIADLI 231
D I+ V+ A T +++ A L+ AK I L
Sbjct: 181 VFDMVVAGRALEDGDVAIMMVEAEATEKTIQLVAGGAEAPTEEVVAAGLDAAKPFIKVLC 240
>gi|307331543|ref|ZP_07610655.1| guanosine pentaphosphate synthetase I/polyribonucleotide
nucleotidyltransferase [Streptomyces violaceusniger Tu
4113]
gi|306882814|gb|EFN13888.1| guanosine pentaphosphate synthetase I/polyribonucleotide
nucleotidyltransferase [Streptomyces violaceusniger Tu
4113]
Length = 752
Score = 135 bits (339), Expect = 6e-30, Method: Composition-based stats.
Identities = 41/241 (17%), Positives = 81/241 (33%), Gaps = 14/241 (5%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +R ++ GS L + G+T +L TL E+ +
Sbjct: 339 RIDGRGVTDIRTLAAEVEAIPRVHGSALFERGETQILGVTTLNMLRMEQQLDTLAPETRK 398
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P STG + + R+ G RAL V+ I +
Sbjct: 399 RYMHNYNFPPYSTGETGRVGSPKRREIGHGAL----AERALLPVLPTREEFPYAIRQVSE 454
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ ++G T ++ + ++L + ++ + + + G + D+
Sbjct: 455 ALSSNGSTSMGSVCASTMSLLNAGVPLKAPVAGIAMGLISQEID-----GETHYVTLTDI 509
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED+ D+D T + +Q + A L A+D ++ + +
Sbjct: 510 LGAEDAFGDMDFKVAGTKQF-VTALQLDTKLDGIPASVLAAALKQARDARLHILDVMNEA 568
Query: 238 I 238
I
Sbjct: 569 I 569
Score = 74.5 bits (181), Expect = 1e-11, Method: Composition-based stats.
Identities = 38/240 (15%), Positives = 66/240 (27%), Gaps = 39/240 (16%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGD-THLLTTATLEEKVPMWIRNT----KHGWITAEYGM 65
R I +++ A GS + D T +L+ T+ + + G
Sbjct: 20 RTIRFETGRLARQAAGSAVAYLDDDTMVLSATTVSKNPKDQLDFFPLTVDVEERMYAAGR 79
Query: 66 LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125
+P S R GR + R+I R LR Q++ + D
Sbjct: 80 IPGSFFRR------EGRPSEDAILTCRLIDRPLRPSFKKGLRNEIQVVETIMALNPDHLY 133
Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185
AI A + G + ++ G + + E
Sbjct: 134 DVVAINAASCSTQLAG-------------LPFSGPIGGTRVALIKGQWVAFPTHSELEEA 180
Query: 186 DVDANFVMT----DSGHIVEVQGSAERATF----------SQDHFFAMLNLAKDRIADLI 231
D I+ V+ A + T +++ A L +K I L
Sbjct: 181 VFDMVVAGRVLEDGDVAIMMVEAEATQQTIQLVKDGAEAPTEEIVAAGLEASKPFIKVLC 240
>gi|24213647|ref|NP_711128.1| polynucleotide phosphorylase [Leptospira interrogans serovar Lai
str. 56601]
gi|45658536|ref|YP_002622.1| polynucleotide phosphorylase/polyadenylase [Leptospira interrogans
serovar Copenhageni str. Fiocruz L1-130]
gi|81406860|sp|Q72NX7|PNP_LEPIC RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|81470924|sp|Q8F7J8|PNP_LEPIN RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|24194449|gb|AAN48146.1| polynucleotide phosphorylase [Leptospira interrogans serovar Lai
str. 56601]
gi|45601779|gb|AAS71259.1| polyribonucleotide nucleotidyltransferase [Leptospira interrogans
serovar Copenhageni str. Fiocruz L1-130]
Length = 698
Score = 135 bits (339), Expect = 6e-30, Method: Composition-based stats.
Identities = 43/243 (17%), Positives = 82/243 (33%), Gaps = 17/243 (6%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R GR+ +++R IS+ GS + G T L TL + + + K
Sbjct: 314 RFDGRKLDEIRSISVEINPLPGPHGSAVFTRGQTQSLGVVTLGTGSDNQRYETLEGQKEK 373
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y S G + R+ G RAL+ V+ I + +
Sbjct: 374 SFMLHYNFPAFSVGEVRRSSGPGRREIGHGNL----AERALKLVLPKPDEFPYVIRVVSE 429
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+++++G + A++ +AL ++ + + S + D+
Sbjct: 430 ILESNGSSSMASVCSGSLALMAAGVPIQGSVSGIAMGL--------FSDSSGKYAVLSDI 481
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T G I Q + S D ++ A+ ++ + +
Sbjct: 482 AGLEDHFGDMDCKIAGTRKG-ITAFQMDLKVTGVSFDVLESVFEQAQRGRFHILDIMEKH 540
Query: 238 ISN 240
IS
Sbjct: 541 ISK 543
Score = 98.0 bits (242), Expect = 9e-19, Method: Composition-based stats.
Identities = 46/249 (18%), Positives = 80/249 (32%), Gaps = 38/249 (15%)
Query: 5 GRQENQMREISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKV----PMWIRNTKHGWI 59
GR I L +K A G+ + K G+ LL T ++ + ++
Sbjct: 10 GRDT-----IVLETGSWAKQAHGAVVYKSGNLVLLATVCAADEAKEGQDFFPLTCEYTEK 64
Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119
G P R + I R+I R +R + Q+ +
Sbjct: 65 LYSVGRFPGGYFKR------EAKPPEHEILISRIIDRPIRPLFPEGYFCEVQLQVQV--- 115
Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179
++ + G +A G + G I++
Sbjct: 116 ----------LSADGDVSVAGHALNAASAALAVSDIPFNGPIAGARIGRVNGELILNPTT 165
Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD--- 236
E D+D T + HIV ++G A+ S + A L A+ IA+ + LQ++
Sbjct: 166 KEILNSDLDLVVAGTKT-HIVMIEGEAKE--LSNEEMIAALRFAQKHIAEFVTLQEEYAK 222
Query: 237 ---VISNEV 242
V+ EV
Sbjct: 223 KIGVVKREV 231
>gi|88855410|ref|ZP_01130074.1| polyribonucleotide nucleotidyltransferase [marine actinobacterium
PHSC20C1]
gi|88815317|gb|EAR25175.1| polyribonucleotide nucleotidyltransferase [marine actinobacterium
PHSC20C1]
Length = 749
Score = 134 bits (338), Expect = 7e-30, Method: Composition-based stats.
Identities = 39/242 (16%), Positives = 79/242 (32%), Gaps = 14/242 (5%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
+R+ GR + +R + V GS + + G+T +L TL E+ +
Sbjct: 349 IRIDGRGLSDIRALDAEVEVIPRVHGSAIFQRGETQILGVTTLNMLKMEQQIDSLAPVTK 408
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P STG + + R+ G RA+ V+ I
Sbjct: 409 KRYMHHYNFPPYSTGETGRVGSPKRREIGHGFL----AERAIAPVLPPREEFPYAIRQVS 464
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+ + ++G T ++ + ++L + + + + + D
Sbjct: 465 EALGSNGSTSMGSVCASTLSLLNAGVPLRAPVAGIAMGLISDEVDGVTRYA-----ALTD 519
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED+ D+D T + +Q + A L AK+ ++ +
Sbjct: 520 ILGAEDALGDMDFKVAGTSEF-VTAIQLDTKLAGLPSSVLDGALKQAKEARTAILSVLNA 578
Query: 237 VI 238
I
Sbjct: 579 AI 580
>gi|74225136|dbj|BAE38260.1| unnamed protein product [Mus musculus]
Length = 783
Score = 134 bits (338), Expect = 7e-30, Method: Composition-based stats.
Identities = 49/247 (19%), Positives = 87/247 (35%), Gaps = 17/247 (6%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE--------EKVPMWIRN 53
R GR +R IS + K GS L + G T +L T T + +++ I
Sbjct: 358 RCDGRDLTSLRNISCEVDMFKTLHGSALFQRGQTQVLCTVTFDSLESSIKSDQIITAING 417
Query: 54 TKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQII 113
K Y P +T K V+ R+ G +AL V+ I
Sbjct: 418 VKDKNFMLHYEFPPYATNETGKVTGVNRRELGHGAL----AEKALCPVIPKDFPF--TIR 471
Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP 173
+ +V++++G + A+ G +AL D + + V K + +
Sbjct: 472 VTSEVLESNGSSSMASACGGSLALMDAGVPISSAVAGVAVGLVTKTNP--EKGEIEDYRL 529
Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
+ D+ ED D+D T+ G I +Q + + A +++++
Sbjct: 530 LTDILGIEDYNGDMDFKIAGTNKG-ITALQADIKLPGVPIKIIMEAIQQASVAKKEILQI 588
Query: 234 QKDVISN 240
IS
Sbjct: 589 MNKTISK 595
Score = 71.0 bits (172), Expect = 1e-10, Method: Composition-based stats.
Identities = 40/218 (18%), Positives = 77/218 (35%), Gaps = 25/218 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTA---TLEEKVPMWIRNTKHGWITAEYGMLP 67
R++ ++ ++++A+G +++ GDT ++ TA T + A G +P
Sbjct: 54 RKLEISSGKLARFADGCAVIQSGDTAVMVTAVSKTKPSPSQFMPLVVDYRQKAAAAGRIP 113
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
+ R R R+I R++R + Q++ + +
Sbjct: 114 TNYLRREIGS------SDREVLTSRVIDRSIRPLFPAGYFYDTQVLCNLLAVDGINEPDI 167
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
A+ GA VA G V A+ GM+ G +V+ E S+ +
Sbjct: 168 LAVNGASVA-------------LSLSDIPWNGPVGAVRIGMIDGECVVNPTRREMSSSTL 214
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKD 225
+ IV ++ SAE Q F + +
Sbjct: 215 NLVVAGAPKSQIVMLEASAEN--ILQQDFCHAIKVGVK 250
>gi|109103041|ref|XP_001112421.1| PREDICTED: polyribonucleotide nucleotidyltransferase 1,
mitochondrial-like [Macaca mulatta]
Length = 754
Score = 134 bits (338), Expect = 7e-30, Method: Composition-based stats.
Identities = 49/247 (19%), Positives = 85/247 (34%), Gaps = 17/247 (6%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE--------EKVPMWIRN 53
R GR +R IS K GS L + G T +L T T + ++V I
Sbjct: 323 RCDGRDLTSLRNISCEVDTFKTLHGSALFQRGQTQVLCTVTFDSLESSIKSDQVITAING 382
Query: 54 TKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQII 113
K Y P +T K ++ R+ G +AL V+ I
Sbjct: 383 IKDKNFMLHYEFPPYATNEIGKVTGLNRRELGHGAL----AEKALYPVIPKDFPF--TIR 436
Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP 173
+ +V++++G + A+ G +AL D + + V K +
Sbjct: 437 VTSEVLESNGSSSMASACGGSLALMDSGVPISSAVAGVAIGLVTKTDP--EKGEIEDYRL 494
Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
+ D+ ED D+D T+ G I +Q + + A +++++
Sbjct: 495 LTDILGIEDYNGDMDFKIAGTNKG-ITALQADIKLPGIPIKIVMEAIQQASVAKKEILQI 553
Query: 234 QKDVISN 240
IS
Sbjct: 554 MNKTISK 560
Score = 76.4 bits (186), Expect = 3e-12, Method: Composition-based stats.
Identities = 42/218 (19%), Positives = 78/218 (35%), Gaps = 25/218 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTA---TLEEKVPMWIRNTKHGWITAEYGMLP 67
R++ ++ ++++A+GS +V+ GDT ++ TA T + A G +P
Sbjct: 19 RKLEISSGKLARFADGSAVVQSGDTAVMVTAVSKTKPSPSQFMPLVVDYRQKAAAAGRIP 78
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
+ R + R+I R++R + Q++ + +
Sbjct: 79 TNYLRREIGT------SDKEILTSRIIDRSIRPLFPAGYFYDTQVLCNLLAVDGINEPDV 132
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
AI GA VA G V A+ GM+ G +V+ E S+ +
Sbjct: 133 LAINGASVA-------------LSLSDIPWNGPVGAVRIGMIDGEYVVNPTRKEMSSSTL 179
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKD 225
+ IV ++ SAE Q F + +
Sbjct: 180 NLVVAGAPKSQIVMLEASAEN--ILQQDFCHAIKVGVK 215
>gi|333024088|ref|ZP_08452152.1| putative polyribonucleotide nucleotidyltransferase [Streptomyces
sp. Tu6071]
gi|332743940|gb|EGJ74381.1| putative polyribonucleotide nucleotidyltransferase [Streptomyces
sp. Tu6071]
Length = 738
Score = 134 bits (338), Expect = 7e-30, Method: Composition-based stats.
Identities = 41/241 (17%), Positives = 81/241 (33%), Gaps = 14/241 (5%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +R ++ GS L + G+T +L TL E+ +
Sbjct: 339 RIDGRGVTDIRTLAAEVEAIPRVHGSALFERGETQILGVTTLNMLRMEQQLDTLSPVTRK 398
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P STG + + R+ G RAL V+ I +
Sbjct: 399 RYMHNYNFPPYSTGETGRVGSPKRREIGHGAL----AERALVPVLPTREEFPYAIRQVSE 454
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ ++G T ++ + ++L + ++ + + + G + D+
Sbjct: 455 ALGSNGSTSMGSVCASTMSLLNAGVPLKAPVAGIAMGLISE-----TVKGETHYVTLTDI 509
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED+ D+D T + +Q + A L A+D ++ + +
Sbjct: 510 LGAEDAFGDMDFKVAGTKEF-VTALQLDTKLDGIPASVLAAALKQARDARLHILDVMMEA 568
Query: 238 I 238
I
Sbjct: 569 I 569
Score = 78.3 bits (191), Expect = 9e-13, Method: Composition-based stats.
Identities = 40/240 (16%), Positives = 65/240 (27%), Gaps = 39/240 (16%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGD-THLLTTATLEEKVPMWIRNT----KHGWITAEYGM 65
R I ++K A GS + D T +L+ T + + G
Sbjct: 20 RTIRFETGRLAKQAAGSAVAYLDDDTMVLSATTASKNPKDQLDFFPLTVDVEERMYAAGK 79
Query: 66 LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125
+P S R GR + R+I R LR Q++ + D
Sbjct: 80 IPGSFFRR------EGRPSEDAILTCRLIDRPLRPSFKKGLRNEIQVVETIMALNPDHLY 133
Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185
AI A + G + ++ G + + E
Sbjct: 134 DVVAINAASCSTQLAG-------------LPFSGPIGGTRVALIKGQWVAFPTHTELEDA 180
Query: 186 DVDANFVMT----DSGHIVEVQGSAERATF----------SQDHFFAMLNLAKDRIADLI 231
D I+ V+ A T +++ A L+ AK I L
Sbjct: 181 VFDMVVAGRVLEDGDVAIMMVEAEATEKTIQLVAGGATAPTEEVVAAGLDAAKPFIKVLC 240
>gi|239928583|ref|ZP_04685536.1| polynucleotide phosphorylase/polyadenylase [Streptomyces ghanaensis
ATCC 14672]
gi|291436909|ref|ZP_06576299.1| polynucleotide phosphorylase/polyadenylase [Streptomyces ghanaensis
ATCC 14672]
gi|291339804|gb|EFE66760.1| polynucleotide phosphorylase/polyadenylase [Streptomyces ghanaensis
ATCC 14672]
Length = 739
Score = 134 bits (338), Expect = 7e-30, Method: Composition-based stats.
Identities = 41/241 (17%), Positives = 81/241 (33%), Gaps = 14/241 (5%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +R ++ GS L + G+T +L TL E+ +
Sbjct: 339 RIDGRGVTDIRTLAAEVEAIPRVHGSALFERGETQILGVTTLNMLRMEQQLDTLSPVTRK 398
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P STG + + R+ G RAL V+ I +
Sbjct: 399 RYMHNYNFPPYSTGETGRVGSPKRREIGHGAL----AERALVPVLPSREEFPYAIRQVSE 454
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ ++G T ++ + ++L + ++ + + + G + D+
Sbjct: 455 ALGSNGSTSMGSVCASTMSLLNAGVPLKAPVAGIAMGLISQEIE-----GETHYVTLTDI 509
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED+ D+D T + +Q + A L A+D ++ + +
Sbjct: 510 LGAEDAFGDMDFKVAGTKDF-VTALQLDTKLDGIPASVLAAALKQARDARLHILDVMMEA 568
Query: 238 I 238
I
Sbjct: 569 I 569
Score = 76.4 bits (186), Expect = 3e-12, Method: Composition-based stats.
Identities = 39/240 (16%), Positives = 65/240 (27%), Gaps = 39/240 (16%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGD-THLLTTATLEEKVPMWIRNT----KHGWITAEYGM 65
R I +++ A GS + D T +L+ T + + G
Sbjct: 20 RTIRFETGRLARQAAGSAVAYLDDDTMVLSATTASKNPKDQLDFFPLTVDVEERMYAAGR 79
Query: 66 LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125
+P S R GR + R+I R LR Q++ + D
Sbjct: 80 IPGSFFRR------EGRPSEDAILTCRLIDRPLRPSFKKGLRNEIQVVATIMALNPDHLY 133
Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185
AI A + G + + ++ G + + E
Sbjct: 134 DVVAINAASASTQLAG-------------LPFSGPIGGVRVALIRGQWVAFPTHTELEDA 180
Query: 186 DVDANFVMT----DSGHIVEVQGSAERATF----------SQDHFFAMLNLAKDRIADLI 231
D I+ V+ A T +++ A L AK I L
Sbjct: 181 VFDMVVAGRTLEDGDVAIMMVEAEATEKTVKLVEGGAEAPTEEVVAAGLEAAKPFIKVLC 240
>gi|296129365|ref|YP_003636615.1| guanosine pentaphosphate synthetase I/polyribonucleotide
nucleotidyltransferase [Cellulomonas flavigena DSM
20109]
gi|296021180|gb|ADG74416.1| guanosine pentaphosphate synthetase I/polyribonucleotide
nucleotidyltransferase [Cellulomonas flavigena DSM
20109]
Length = 744
Score = 134 bits (338), Expect = 7e-30, Method: Composition-based stats.
Identities = 43/242 (17%), Positives = 79/242 (32%), Gaps = 14/242 (5%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
R+ GR +R +S V GS L + G+T +L TL E+ +
Sbjct: 340 FRIDGRGLRDIRTLSAEVEVLPRTHGSALFERGETQILGVTTLNMLRMEQQLDTLAPETR 399
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P STG + + R+ G RA+ V+ I
Sbjct: 400 KRYMHHYNFPPFSTGETGRVGSPKRREIGHGAL----AERAIVPVLPSREEFPYAIRQVS 455
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+ + ++G T ++ A ++L + + + V G + D
Sbjct: 456 EALGSNGSTSMGSVCAATLSLLNAGVPLRAPVAGIAMGLVSD-----TVDGETRYAALTD 510
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED+ D+D T + +Q + L AK+ ++ + +
Sbjct: 511 ILGAEDAFGDMDFKVAGTREF-VTAIQLDTKLDGIPASVLAGALTQAKEARLAILDVIAE 569
Query: 237 VI 238
I
Sbjct: 570 AI 571
Score = 67.9 bits (164), Expect = 1e-09, Method: Composition-based stats.
Identities = 41/246 (16%), Positives = 70/246 (28%), Gaps = 40/246 (16%)
Query: 12 REISLTRR-VSKYAEGSCLVKF-GDTHLLTTATLE----EKVPMWIRNTKHGWITAEYGM 65
R + ++K A GS + DT LL+ T E + G
Sbjct: 21 RTVRFETGRLAKQAAGSAVAYLDDDTMLLSATTAGKHPREGFDFFPLTVDVEERQYAAGK 80
Query: 66 LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125
+P S R GR + R+I R LR + Q+++ I D
Sbjct: 81 IPGSFFRR------EGRPSTEAILACRLIDRPLRPLFVKGLRNEVQVVVTVLSINPDDAY 134
Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185
AI A ++ G V A+ ++ G + Y E
Sbjct: 135 DVLAINAASISTQ-------------ISGLPFSGPVGAVRIALIDGQWVAFPRYTERERA 181
Query: 186 DVDANFVM----TDSGHIVEVQGSAERATF-----------SQDHFFAMLNLAKDRIADL 230
+ I ++ A ++ ++ L +K I L
Sbjct: 182 TFEIVVAGRVVEGGDVAIAMIEAEAPEKSWNLIRNEGGVAPTEAVVAEGLEASKPFIKAL 241
Query: 231 IKLQKD 236
+ Q +
Sbjct: 242 VTAQME 247
>gi|331269622|ref|YP_004396114.1| polyribonucleotide nucleotidyltransferase [Clostridium botulinum
BKT015925]
gi|329126172|gb|AEB76117.1| Polyribonucleotide nucleotidyltransferase [Clostridium botulinum
BKT015925]
Length = 706
Score = 134 bits (338), Expect = 8e-30, Method: Composition-based stats.
Identities = 49/248 (19%), Positives = 90/248 (36%), Gaps = 19/248 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R GR +++R +S + GS L G T +++ ATL E +V I
Sbjct: 312 RPDGRNFDEIRPLSAETSLLPRTHGSGLFTRGLTQVMSVATLGSVSEGQVLDGIDEETSK 371
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y S G + R+ G +A+ ++ I + +
Sbjct: 372 RYMHHYNFPSYSVGEVRPLRGPNRREIGHGAL----AEKAIEPLIPSEQEFPYAIRVVSE 427
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
V+ ++G T A++ G+ +AL D ++ + + V + + D+
Sbjct: 428 VLSSNGSTSQASVCGSTLALLDAGVPIKRPAAGIAMGLVTSED-------LSKEEILTDI 480
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T+ G I +Q + S D ++ A+ ++K+ D
Sbjct: 481 QGLEDFFGDMDFKVAGTEEG-ITAIQVDTKIEGLSNDCIKKAISDARTARLTILKVINDC 539
Query: 238 I---SNEV 242
I EV
Sbjct: 540 IDKPREEV 547
Score = 82.2 bits (201), Expect = 5e-14, Method: Composition-based stats.
Identities = 37/234 (15%), Positives = 72/234 (30%), Gaps = 27/234 (11%)
Query: 12 REISLTRRVSKYAEGSCL-VKFGDTHLLTTATLE----EKVPMWIRNTKHGWITAEYGML 66
R++ L + +GDT +L E + + + ++ G +
Sbjct: 12 RKLKGEFGKLGMLSDCALNISYGDTVVLINVNASPAPKEGIDFFPLSIEYQERLYAVGKI 71
Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
P R GR R+ R I R LR + Q++ + D
Sbjct: 72 PGGFIKR------EGRPSDRAILNARAIDRPLRPLFPKGYRNDVQVVCTVVSVDQDNLPN 125
Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
A+ GA +AL S V +S G++ G I + +
Sbjct: 126 ILAMNGASLALC-------------LSSIPFTKPVGTVSVGLIDGKFIANPTSKQREESI 172
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
+D T ++ ++ E +D + + + + Q+ V+
Sbjct: 173 LDLTVCATKE-RVMMIEAGGEE--IPEDVMYDAIMFGFEECKKIADFQEKVMEQ 223
>gi|317057303|ref|YP_004105770.1| polyribonucleotide nucleotidyltransferase [Ruminococcus albus 7]
gi|315449572|gb|ADU23136.1| polyribonucleotide nucleotidyltransferase [Ruminococcus albus 7]
Length = 705
Score = 134 bits (338), Expect = 8e-30, Method: Composition-based stats.
Identities = 43/244 (17%), Positives = 83/244 (34%), Gaps = 18/244 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +++R ++ V GS + G T ++T TL + + +
Sbjct: 314 RVDGRGIDEIRPLAAEVGVLPRVHGSGIFTRGQTQVMTICTLGPVSDAQKLDGLDEETSK 373
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
+Y S G R+ G RAL V+ I +
Sbjct: 374 RYMHQYNFPSYSVGETRPSRGPGRREIGHGAL----AERALVPVLPSVDEFPYAIRCVSE 429
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
V+ ++G T +I G+ +AL D +++ + K + +VD+
Sbjct: 430 VLSSNGSTSQGSICGSTLALMDAGVPIKEPVAGISCGLITKEDGS--------WMTMVDI 481
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI-KLQKD 236
ED D+D T +G I +Q + + D + + ++ ++
Sbjct: 482 QGLEDFYGDMDFKVGGTKNG-ITAIQVDIKVDGLTMDIIASAFEKTRKARMYILDEIMLK 540
Query: 237 VISN 240
I
Sbjct: 541 AIPE 544
Score = 91.1 bits (224), Expect = 1e-16, Method: Composition-based stats.
Identities = 32/229 (13%), Positives = 73/229 (31%), Gaps = 27/229 (11%)
Query: 12 REISLTRRVSKY-AEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKHGWITAEYGML 66
R + + + A GSC V++G+T ++ T E V + + G +
Sbjct: 15 RPVVVETGKTCGLANGSCWVRYGETVVMANVTASKKPREGVDFFPLSVDFEEKMYAVGRI 74
Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
P S R G+ ++ R + R +R + +++ + D
Sbjct: 75 PGSFTKR------EGKASDKAILTSRCVDRPIRPLFPKDMRNDVTVVMTVLAVDPDNSPE 128
Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
+ + G VA+I+ G + G +++ + + +
Sbjct: 129 ITGM-------------IAAAIAISISDIPWNGPVASINVGYVDGELVLNPTLEQRAKNE 175
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
++ + IV ++ A D + I +++ K
Sbjct: 176 LNLTVAGSAD-KIVMIEAGANE--IPDDLMLKAIETGHTEIKKMVEFIK 221
>gi|52549121|gb|AAU82970.1| ribonuclease PH [uncultured archaeon GZfos24D9]
Length = 242
Score = 134 bits (338), Expect = 8e-30, Method: Composition-based stats.
Identities = 66/242 (27%), Positives = 104/242 (42%), Gaps = 23/242 (9%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKV-PMWIRNTKHGWIT 60
RLSGR ++R I + + K A+GSC + G+ L ++ P +N K +
Sbjct: 14 RLSGRGFEELRPIKIEVGLLKRADGSCYFELGNNKALAAVYGPREMHPRHFQNAKRAVVK 73
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
Y M P S +R + RSQEI + +AL V+ I + +V+Q
Sbjct: 74 YRYNMAPFSVDDRKRPG-----PDRRSQEISMVSRKALDPVILRELYPKTAIEVYVEVLQ 128
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
+D GTRTA I A VAL D M D V++++ G + G ++DLD
Sbjct: 129 SDAGTRTAGINAASVALADAGIPMRDL-------------VSSVAIGKIDGEVVLDLDAK 175
Query: 181 EDSTIDVDANFVM-TDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
ED+ + D M + I +Q ++ F L LA + + +LQK +
Sbjct: 176 EDNFGEADVPIAMIARTNTITLLQMDGR---LKKEEFERGLKLAMNGCRKIYELQKAALV 232
Query: 240 NE 241
+
Sbjct: 233 EK 234
>gi|307721696|ref|YP_003892836.1| polyribonucleotide nucleotidyltransferase [Sulfurimonas
autotrophica DSM 16294]
gi|306979789|gb|ADN09824.1| polyribonucleotide nucleotidyltransferase [Sulfurimonas
autotrophica DSM 16294]
Length = 726
Score = 134 bits (338), Expect = 8e-30, Method: Composition-based stats.
Identities = 49/243 (20%), Positives = 86/243 (35%), Gaps = 23/243 (9%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWI------RNT 54
+R GR+ ++R I++ V A SCL G T L T+ + T
Sbjct: 344 VRADGRKLTEIRPITIDTNVLPAAHSSCLFTRGQTQALVVLTMGGPKDAQMFEGLTDEGT 403
Query: 55 KHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIII 114
++ Y S G R+ G RAL ++DL + + +
Sbjct: 404 QNENFMVHYNFPGFSVGEASPVMGTKRRELGHGNL----AKRALEPIIDLD---GQTVRL 456
Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPI 174
++++++G + A + G ++AL D + V G AI ++
Sbjct: 457 VSEILESNGSSSMATVCGGYMALRAADIETSDTVAGIAMGMVSDGERYAILSDIM----- 511
Query: 175 VDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
ED D+D + G I +Q + S + L AK+ A +I +
Sbjct: 512 ----GLEDHDGDMDFKVTGSKEG-ITAMQMDIKLGGISLNILKEALYQAKEGRAHIIDIM 566
Query: 235 KDV 237
D
Sbjct: 567 LDA 569
Score = 67.2 bits (162), Expect = 2e-09, Method: Composition-based stats.
Identities = 33/209 (15%), Positives = 63/209 (30%), Gaps = 26/209 (12%)
Query: 19 RVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----HGWITAEYGMLPRSTGNRV 74
V+K A GS +K G T +L T ++E + + T G +P R
Sbjct: 20 DVAKQANGSAWIKSGKTVILATVVIDETEIVKDDFLPLTVQYIEKTYAAGKIPGGFFKR- 78
Query: 75 KREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAW 134
+ R++ R+LR + QI I +
Sbjct: 79 -----ETKPSDFETLTSRIVDRSLRPLFPKGFGHPTQITIMV-------------FSADS 120
Query: 135 VALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMT 194
+ L + F + V A+ + G I++ + +D T
Sbjct: 121 ESDMQVLALNAASAALFTSDIDVNSSVCAVRAAKVDGELILNPTLTQLKNSSLDLYLSGT 180
Query: 195 DSGHIVEVQGS--AERATFSQDHFFAMLN 221
++ ++ +D + ML+
Sbjct: 181 KDD-LLMIEMRSIGSEKVEVEDTYEPMLD 208
>gi|302522241|ref|ZP_07274583.1| polyribonucleotide nucleotidyltransferase [Streptomyces sp. SPB78]
gi|302431136|gb|EFL02952.1| polyribonucleotide nucleotidyltransferase [Streptomyces sp. SPB78]
Length = 739
Score = 134 bits (338), Expect = 8e-30, Method: Composition-based stats.
Identities = 41/241 (17%), Positives = 81/241 (33%), Gaps = 14/241 (5%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +R ++ GS L + G+T +L TL E+ +
Sbjct: 340 RIDGRGVTDIRTLAAEVEAIPRVHGSALFERGETQILGVTTLNMLRMEQQLDTLSPVTRK 399
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P STG + + R+ G RAL V+ I +
Sbjct: 400 RYMHNYNFPPYSTGETGRVGSPKRREIGHGAL----AERALVPVLPTREEFPYAIRQVSE 455
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ ++G T ++ + ++L + ++ + + + G + D+
Sbjct: 456 ALGSNGSTSMGSVCASTMSLLNAGVPLKAPVAGIAMGLISE-----TVKGETHYVTLTDI 510
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED+ D+D T + +Q + A L A+D ++ + +
Sbjct: 511 LGAEDAFGDMDFKVAGTKEF-VTALQLDTKLDGIPASVLAAALKQARDARLHILDVMMEA 569
Query: 238 I 238
I
Sbjct: 570 I 570
Score = 78.0 bits (190), Expect = 1e-12, Method: Composition-based stats.
Identities = 40/240 (16%), Positives = 64/240 (26%), Gaps = 39/240 (16%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGD-THLLTTATLEEKVPMWIRNT----KHGWITAEYGM 65
R I ++K A GS + D T +L+ T + + G
Sbjct: 21 RTIRFETGRLAKQAAGSAVAYLDDDTMVLSATTASKNPKDQLDFFPLTVDVEERMYAAGK 80
Query: 66 LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125
+P S R GR + R+I R LR Q++ + D
Sbjct: 81 IPGSFFRR------EGRPSEDAILTCRLIDRPLRPSFKKGLRNEIQVVETIMALNPDHLY 134
Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185
AI A + G + ++ G + + E
Sbjct: 135 DVVAINAASCSTQLAG-------------LPFSGPIGGTRVALIKGQWVAFPTHTELEDA 181
Query: 186 DVDANFVMT----DSGHIVEVQGSAERATF----------SQDHFFAMLNLAKDRIADLI 231
D I+ V+ A T +++ A L AK I L
Sbjct: 182 VFDMVVAGRVLEDGDVAIMMVEAEATEKTIQLVAGGATAPTEEVVAAGLEAAKPFIKVLC 241
>gi|318062386|ref|ZP_07981107.1| polynucleotide phosphorylase/polyadenylase [Streptomyces sp.
SA3_actG]
gi|318078519|ref|ZP_07985851.1| polynucleotide phosphorylase/polyadenylase [Streptomyces sp.
SA3_actF]
Length = 738
Score = 134 bits (338), Expect = 8e-30, Method: Composition-based stats.
Identities = 41/241 (17%), Positives = 81/241 (33%), Gaps = 14/241 (5%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +R ++ GS L + G+T +L TL E+ +
Sbjct: 339 RIDGRGVTDIRTLAAEVEAIPRVHGSALFERGETQILGVTTLNMLRMEQQLDTLSPVTRK 398
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P STG + + R+ G RAL V+ I +
Sbjct: 399 RYMHNYNFPPYSTGETGRVGSPKRREIGHGAL----AERALVPVLPTREEFPYAIRQVSE 454
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ ++G T ++ + ++L + ++ + + + G + D+
Sbjct: 455 ALGSNGSTSMGSVCASTMSLLNAGVPLKAPVAGIAMGLISE-----TVKGETHYVTLTDI 509
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED+ D+D T + +Q + A L A+D ++ + +
Sbjct: 510 LGAEDAFGDMDFKVAGTKEF-VTALQLDTKLDGIPASVLAAALKQARDARLHILDVMMEA 568
Query: 238 I 238
I
Sbjct: 569 I 569
Score = 78.0 bits (190), Expect = 1e-12, Method: Composition-based stats.
Identities = 40/240 (16%), Positives = 64/240 (26%), Gaps = 39/240 (16%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGD-THLLTTATLEEKVPMWIRNT----KHGWITAEYGM 65
R I ++K A GS + D T +L+ T + + G
Sbjct: 20 RTIRFETGRLAKQAAGSAVAYLDDDTMVLSATTASKNPKDQLDFFPLTVDVEERMYAAGK 79
Query: 66 LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125
+P S R GR + R+I R LR Q++ + D
Sbjct: 80 IPGSFFRR------EGRPSEDAILTCRLIDRPLRPSFKKGLRNEIQVVETIMALNPDHLY 133
Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185
AI A + G + ++ G + + E
Sbjct: 134 DVVAINAASCSTQLAG-------------LPFSGPIGGTRVALIKGQWVAFPTHTELEDA 180
Query: 186 DVDANFVMT----DSGHIVEVQGSAERATF----------SQDHFFAMLNLAKDRIADLI 231
D I+ V+ A T +++ A L AK I L
Sbjct: 181 VFDMVVAGRVLEDGDVAIMMVEAEATEKTIQLVAGGATAPTEEVVAAGLEAAKPFIKVLC 240
>gi|254382116|ref|ZP_04997478.1| polynucleotide phosphorylase/polyadenylase [Streptomyces sp. Mg1]
gi|194341023|gb|EDX21989.1| polynucleotide phosphorylase/polyadenylase [Streptomyces sp. Mg1]
Length = 745
Score = 134 bits (338), Expect = 8e-30, Method: Composition-based stats.
Identities = 39/242 (16%), Positives = 81/242 (33%), Gaps = 14/242 (5%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
+R+ GR +R ++ GS L + G+T +L TL E+ +
Sbjct: 343 VRIDGRGITDIRTLAAEVEAIPRVHGSALFERGETQILGVTTLNMLRMEQQLDTLSPVTR 402
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P S G + + R+ G RA+ V+ I
Sbjct: 403 KRYMHNYNFPPYSVGETGRVGSPKRREIGHGAL----AERAIVPVLPTREEFPYAIRQVS 458
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+ + ++G T ++ + ++L + ++ + + + G + D
Sbjct: 459 EALGSNGSTSMGSVCASTMSLLNAGVPLKAPVAGIAMGLISQEID-----GKTHYVALTD 513
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED+ D+D T + +Q + A L A+D ++ + +
Sbjct: 514 ILGAEDAFGDMDFKVAGTKEF-VTALQLDTKLDGIPASVLAAALKQARDARLHILDVMME 572
Query: 237 VI 238
I
Sbjct: 573 AI 574
Score = 79.1 bits (193), Expect = 5e-13, Method: Composition-based stats.
Identities = 40/240 (16%), Positives = 67/240 (27%), Gaps = 39/240 (16%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGD-THLLTTATLEEKVPMWIRNT----KHGWITAEYGM 65
R I +++ A GS + D T +L+ T +K + G
Sbjct: 25 RTIRFETGRLARQAAGSAVAYLDDDTMVLSATTASKKPKDQLDFFPLTVDVEERQYAAGK 84
Query: 66 LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125
+P S R GR + R+I R LR Q++ + D
Sbjct: 85 IPGSFFRR------EGRPSEDAILTCRLIDRPLRPSFKKGLRNEIQVVATIMALNPDHLY 138
Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185
AI A + G + + ++ G + + E
Sbjct: 139 DVVAINAASASTQLAG-------------LPFSGPIGGVRVALIRGQWVAFPTHTELEDA 185
Query: 186 DVDANFVMT----DSGHIVEVQGSAERATF----------SQDHFFAMLNLAKDRIADLI 231
D I+ V+ A T +++ A L+ AK I L
Sbjct: 186 VFDMVVAGRVLEDGDVAIMMVEAEATEKTIALVKGGAEAPTEEIVAAGLDAAKPFIKVLC 245
>gi|325186086|emb|CCA20587.1| polyribonucleotide nucleotidyltransferase putative [Albugo
laibachii Nc14]
Length = 826
Score = 134 bits (338), Expect = 8e-30, Method: Composition-based stats.
Identities = 43/248 (17%), Positives = 82/248 (33%), Gaps = 16/248 (6%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE---------EKVPMWIR 52
R GR Q+R+I+ + A GS + GDT L + TL
Sbjct: 406 RFDGRPLAQIRQINARTSILPMAHGSAVFSRGDTQALCSVTLGSLDQGLRLRSATIDPSD 465
Query: 53 NTKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQI 112
+++ Y P + ++ R G +A+ ++ I
Sbjct: 466 ESEYKHAILHYEFPPYCVNETGRLGGINRRMVGHGAL----AEKAILPILPSIEEFPYTI 521
Query: 113 IIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY 172
+ ++ +DG + A I G +AL D +E + V + ++ G
Sbjct: 522 RMTSEITGSDGSSSMATICGVSLALLDAGVPIEAPIAGISVGLVSEPRESSSRFGK--YR 579
Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
+ D+ ED D+D T G I +Q + F + A++ ++
Sbjct: 580 LVTDILGSEDHYGDMDFKVAGTRKG-ITALQLDVKIPGVPPSVLFESIEKAREARYQILD 638
Query: 233 LQKDVISN 240
++
Sbjct: 639 SMDQTLAK 646
Score = 79.1 bits (193), Expect = 4e-13, Method: Composition-based stats.
Identities = 33/220 (15%), Positives = 65/220 (29%), Gaps = 18/220 (8%)
Query: 20 VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGNRVKREAV 79
++ A+G + G +LTTA + + +R+
Sbjct: 111 FARLADGGVMTTCGKCVILTTAVSQSGRKKGKDFLPLMVDYRVKYYASGIIPDTARRK-- 168
Query: 80 SGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVALHD 139
R+I R +R + L QII D + AI A
Sbjct: 169 EFAGSDEEILQSRVIDRVIRPLFPKGFLEETQIIATVHSYDPDNDSLVLAINSTSAA--- 225
Query: 140 CLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHI 199
G V + + G +++ + ++ + I
Sbjct: 226 ----------LATSDIPWDGPVGCVRVVQVDGQLVLNPTESQKEAATLNILYAGNQKRTI 275
Query: 200 VEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
++ E+ + L A D +AD++K Q+++I
Sbjct: 276 -MIEAEGEQ--IDEKRLSEALRFAHDGVADVLKAQRELIK 312
>gi|308176844|ref|YP_003916250.1| polyribonucleotide nucleotidyltransferase [Arthrobacter
arilaitensis Re117]
gi|307744307|emb|CBT75279.1| polyribonucleotide nucleotidyltransferase [Arthrobacter
arilaitensis Re117]
Length = 745
Score = 134 bits (338), Expect = 8e-30, Method: Composition-based stats.
Identities = 42/242 (17%), Positives = 83/242 (34%), Gaps = 14/242 (5%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
+R+ GR +R++S V GS + + G+T ++ TL E+ + K
Sbjct: 346 VRIDGRGLADIRQLSAEVEVLPRVHGSAIFERGETQIMGVTTLNMLKMEQQIDSLSPVKS 405
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P STG + + R+ G RAL V+ I
Sbjct: 406 KRYMHNYNFPPYSTGETGRVGSPKRREIGHGAL----AERALVPVLPSREEFPYAIRQVS 461
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+ + ++G T ++ + ++L + ++ + V G + D
Sbjct: 462 EALGSNGSTSMGSVCASTLSLLNAGVPLKAAVAGIAMGLVSD-----TVDGETRYAALTD 516
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED+ D+D T + +Q + A L A++ ++ +
Sbjct: 517 ILGAEDAMGDMDFKVAGTSEF-VTAIQLDTKLDGIPASVLAAALTQAREARLHILNVLNQ 575
Query: 237 VI 238
I
Sbjct: 576 AI 577
Score = 70.6 bits (171), Expect = 2e-10, Method: Composition-based stats.
Identities = 38/241 (15%), Positives = 69/241 (28%), Gaps = 35/241 (14%)
Query: 12 REISLTRR-VSKYAEGSCLVKF-GDTHLLTTATLE----EKVPMWIRNTKHGWITAEYGM 65
R I ++K A GS +V +T LL+ T E + G
Sbjct: 21 RTIRFETGRIAKQAAGSAMVYIDDETALLSATTAGKHPREGFDFFPLTVDVEERMYAAGR 80
Query: 66 LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125
+P S R GR + R++ R LR Q+++ I+ D
Sbjct: 81 IPGSFFRR------EGRPSTEAILACRLMDRPLRPAFVKGLRNEVQVVVTVLSIEPDELY 134
Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185
AI + ++ +++ V + + E
Sbjct: 135 DVVAINASSMSTQLSGLPFSGPIGGVRVALVDD---------GNGAQWVAFPKHSELKNA 185
Query: 186 DVDANFVMTDSG---HIVEVQGSAERATF-----------SQDHFFAMLNLAKDRIADLI 231
+ +G I+ V+ A + +++ L AK I L
Sbjct: 186 VFNMVVAGRIAGDDVAIMMVEAEATDNAWELIKERGAQAPTEEVVAEGLEAAKPFIKVLC 245
Query: 232 K 232
+
Sbjct: 246 E 246
>gi|294631766|ref|ZP_06710326.1| polyribonucleotide nucleotidyltransferase [Streptomyces sp. e14]
gi|292835099|gb|EFF93448.1| polyribonucleotide nucleotidyltransferase [Streptomyces sp. e14]
Length = 740
Score = 134 bits (337), Expect = 9e-30, Method: Composition-based stats.
Identities = 41/241 (17%), Positives = 81/241 (33%), Gaps = 14/241 (5%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +R ++ GS L + G+T +L TL E+ +
Sbjct: 340 RIDGRGVTDIRTLAAEVEAIPRVHGSALFERGETQILGVTTLNMLRMEQQLDTLSPVTRK 399
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P STG + + R+ G RAL V+ I +
Sbjct: 400 RYMHNYNFPPYSTGETGRVGSPKRREIGHGAL----AERALVPVLPTREEFPYAIRQVSE 455
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ ++G T ++ + ++L + ++ + + + G + D+
Sbjct: 456 ALGSNGSTSMGSVCASTMSLLNAGVPLKAPVAGIAMGLISQEIE-----GETHYVTLTDI 510
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED+ D+D T + +Q + A L A+D ++ + +
Sbjct: 511 LGAEDAFGDMDFKVAGTKEF-VTALQLDTKLDGIPASVLAAALKQARDARLHILDVMMEA 569
Query: 238 I 238
I
Sbjct: 570 I 570
Score = 84.5 bits (207), Expect = 1e-14, Method: Composition-based stats.
Identities = 42/243 (17%), Positives = 67/243 (27%), Gaps = 39/243 (16%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGD-THLLTTATLEEKVPMWIRNT----KHGWITAEYGM 65
R I ++K A GS + D T +L+ T + + G
Sbjct: 21 RTIRFETGRLAKQAAGSAVAYLDDDTMVLSATTASKNPKDQLDFFPLTVDVEERMYAAGK 80
Query: 66 LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125
+P S R GR + R+I R LR Q++ + D
Sbjct: 81 IPGSFFRR------EGRPSEDAILTCRLIDRPLRPSFKKGLRNEIQVVCTVMALNPDHLY 134
Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185
AI A + G + + ++ G + + E
Sbjct: 135 DVVAINAASASTQLAG-------------LPFSGPIGGVRVALINGQWVAFPTHTELEDA 181
Query: 186 DVDANFVMT----DSGHIVEVQGSAERATF----------SQDHFFAMLNLAKDRIADLI 231
D I+ V+ A T +++ A L AK I L
Sbjct: 182 VFDMVVAGRVLEDGDVAIMMVEAEATEKTIQLVKGGAEAPTEEVVAAGLEAAKPFIKVLC 241
Query: 232 KLQ 234
K Q
Sbjct: 242 KAQ 244
>gi|28193987|gb|AAO33354.1|AF465249_1 polynucleotide phosphorylase [Mus musculus]
Length = 748
Score = 134 bits (337), Expect = 9e-30, Method: Composition-based stats.
Identities = 48/247 (19%), Positives = 86/247 (34%), Gaps = 17/247 (6%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE--------EKVPMWIRN 53
R GR +R IS + K GS L + G T +L T T + +++ +
Sbjct: 323 RCDGRDLTSLRNISCEVDMFKTLHGSALFQRGQTQVLCTVTFDSLESSIKSDQIITAVNG 382
Query: 54 TKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQII 113
K Y P +T K V+ R+ G +AL V+ I
Sbjct: 383 VKDKNFMLHYEFPPYATNETGKVTGVNRRELGHGAL----AEKALCPVIPKDFPF--TIR 436
Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP 173
+ +V++++G + A+ G AL D + + V K + +
Sbjct: 437 VTSEVLESNGSSSMASACGGSXALMDAGVPISSAVAGVAVGLVTKTNP--EKGEIEDYRL 494
Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
+ D+ ED D+D T+ G I +Q + + A +++++
Sbjct: 495 LTDILGIEDYNGDMDFKIAGTNKG-ITALQADIKLPGVPIKIIMEAIQQASVAKKEILQI 553
Query: 234 QKDVISN 240
IS
Sbjct: 554 MNKTISK 560
Score = 70.6 bits (171), Expect = 2e-10, Method: Composition-based stats.
Identities = 40/218 (18%), Positives = 77/218 (35%), Gaps = 25/218 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTA---TLEEKVPMWIRNTKHGWITAEYGMLP 67
R++ ++ ++++A+G +++ GDT ++ TA T + A G +P
Sbjct: 20 RKLEISSGKLARFADGCAVIQSGDTAVMVTAVSKTKPSPSQFMPLVVDYRQKAAAAGRIP 79
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
+ R R R+I R++R + Q++ + +
Sbjct: 80 TNYLRREIGS------SDREVLTSRVIDRSIRPLFPAGYFYDTQVLCNLLAVDGINEPDI 133
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
A+ GA VA G V A+ GM+ G +V+ E S+ +
Sbjct: 134 LAVNGASVA-------------LSLSDIPWNGPVGAVRIGMIDGECVVNPTRREMSSSTL 180
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKD 225
+ IV ++ SAE Q F + +
Sbjct: 181 NLVVAGAPKSQIVMLEASAEN--ILQQDFCHAIKVGVK 216
>gi|269956017|ref|YP_003325806.1| guanosine pentaphosphate synthetase I/polyribonucleotide
nucleotidyltransferase [Xylanimonas cellulosilytica DSM
15894]
gi|269304698|gb|ACZ30248.1| guanosine pentaphosphate synthetase I/polyribonucleotide
nucleotidyltransferase [Xylanimonas cellulosilytica DSM
15894]
Length = 744
Score = 134 bits (337), Expect = 9e-30, Method: Composition-based stats.
Identities = 37/242 (15%), Positives = 79/242 (32%), Gaps = 14/242 (5%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
+R+ GR +R + V GS + + G+T ++ TL E+ +
Sbjct: 338 IRIDGRGPRDIRTLGAEVEVLPRVHGSAIFERGETQIMGVTTLNMLRMEQQIDSLGPVTR 397
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P STG + + R+ G RAL V+ I
Sbjct: 398 KRYMHNYNFPPYSTGETGRVGSPKRREIGHGAL----AERALVPVLPSREEFPYAIRQVS 453
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+ + ++G T ++ + +++ + ++ + + G + D
Sbjct: 454 EALGSNGSTSMGSVCASTLSMLNAGVPLKAPVAGIAMGLISDE-----VDGETRYVALTD 508
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED+ D+D T + +Q + L A + ++ + +
Sbjct: 509 ILGAEDALGDMDFKVAGTRDF-VTAIQLDTKLDGIPASVLAGALTQAHEARVTILDVLNE 567
Query: 237 VI 238
I
Sbjct: 568 AI 569
>gi|114577443|ref|XP_515490.2| PREDICTED: polyribonucleotide nucleotidyltransferase 1,
mitochondrial [Pan troglodytes]
Length = 783
Score = 134 bits (337), Expect = 9e-30, Method: Composition-based stats.
Identities = 48/247 (19%), Positives = 86/247 (34%), Gaps = 17/247 (6%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE--------EKVPMWIRN 53
R GR +R +S + K GS L + G T +L T T + ++V I
Sbjct: 358 RCDGRDLTSLRNVSCEVDMFKTLHGSALFQRGQTQVLCTVTFDSLESGIKSDQVITAING 417
Query: 54 TKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQII 113
K Y P +T K ++ R+ G +AL V+ I
Sbjct: 418 IKDKNFMLHYEFPPYATNEIGKVTGLNRRELGHGAL----AEKALYPVIPRDFPF--TIR 471
Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP 173
+ +V++++G + A+ G +AL D + + V K +
Sbjct: 472 VTSEVLESNGSSSMASACGGSLALMDSGVPISSAVAGVAIGLVTKTDP--EKGEIEDYRL 529
Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
+ D+ ED D+D T+ G I +Q + + A +++++
Sbjct: 530 LTDILGIEDYNGDMDFKIAGTNKG-ITALQADIKLPGIPIKIVMEAIQQASVAKKEILQI 588
Query: 234 QKDVISN 240
IS
Sbjct: 589 MNKTISK 595
Score = 76.0 bits (185), Expect = 4e-12, Method: Composition-based stats.
Identities = 41/218 (18%), Positives = 78/218 (35%), Gaps = 25/218 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTA---TLEEKVPMWIRNTKHGWITAEYGMLP 67
R++ ++ ++++A+GS +V+ GDT ++ TA T + A G +P
Sbjct: 54 RKLEISSGKLARFADGSAVVQSGDTAVMVTAVSKTKPSPSQFMPLVVDYRQKAAAAGRIP 113
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
+ R + R+I R++R + Q++ + +
Sbjct: 114 TNYLRREIGT------SDKEILTSRIIDRSIRPLFPAGYFYDTQVLCNLLAVDGVNEPDV 167
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
AI GA VA G V A+ G++ G +V+ E S+ +
Sbjct: 168 LAINGASVA-------------LSLSDIPWNGPVGAVRIGIIDGEYVVNPTRKEMSSSTL 214
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKD 225
+ IV ++ SAE Q F + +
Sbjct: 215 NLVVAGAPKSQIVMLEASAEN--ILQQDFCHAIKVGVK 250
>gi|24943088|gb|AAK13047.1| 3'-5' RNA exonuclease [Homo sapiens]
Length = 783
Score = 134 bits (337), Expect = 9e-30, Method: Composition-based stats.
Identities = 48/247 (19%), Positives = 86/247 (34%), Gaps = 17/247 (6%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE--------EKVPMWIRN 53
R GR +R +S + K GS L + G T +L T T + ++V I
Sbjct: 358 RCDGRDLTSLRNVSCEVDMFKTLHGSALFQRGQTQVLCTVTFDSLESGIKSDQVITAING 417
Query: 54 TKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQII 113
K Y P +T K ++ R+ G +AL V+ I
Sbjct: 418 IKDKNFMLHYEFPPYATNEIGKVTGLNRRELGHGAL----AEKALYPVIPRDFPF--TIR 471
Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP 173
+ +V++++G + A+ G +AL D + + V K +
Sbjct: 472 VTSEVLESNGSSSMASACGGSLALMDSGVPISSAVAGVAIGLVTKTDP--EKGEIEDYRL 529
Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
+ D+ ED D+D T+ G I +Q + + A +++++
Sbjct: 530 LTDILGIEDYNGDMDFKIAGTNKG-ITALQADIKLPGIPIKIVMEAIQQASVAKKEILQI 588
Query: 234 QKDVISN 240
IS
Sbjct: 589 MNKTISK 595
Score = 76.0 bits (185), Expect = 4e-12, Method: Composition-based stats.
Identities = 41/218 (18%), Positives = 78/218 (35%), Gaps = 25/218 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTA---TLEEKVPMWIRNTKHGWITAEYGMLP 67
R++ ++ ++++A+GS +V+ GDT ++ TA T + A G +P
Sbjct: 54 RKLEISSGKLARFADGSAVVQSGDTAVMVTAVSKTKPSPSQFMPLVVDYRQKAAAAGRIP 113
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
+ R + R+I R++R + Q++ + +
Sbjct: 114 TNYLRREVGT------SDKEILTSRIIDRSIRPLFPAGYFYDTQVLCNLLAVDGVNEPDV 167
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
AI GA VA G V A+ G++ G +V+ E S+ +
Sbjct: 168 LAINGASVA-------------LSLSDIPWNGPVGAVRIGIIDGEYVVNPTRKEMSSSTL 214
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKD 225
+ IV ++ SAE Q F + +
Sbjct: 215 NLVVAGAPKSQIVMLEASAEN--ILQQDFCHAIKVGVK 250
>gi|188528628|ref|NP_149100.2| polyribonucleotide nucleotidyltransferase 1, mitochondrial
precursor [Homo sapiens]
gi|115502437|sp|Q8TCS8|PNPT1_HUMAN RecName: Full=Polyribonucleotide nucleotidyltransferase 1,
mitochondrial; AltName: Full=3'-5' RNA exonuclease
OLD35; AltName: Full=PNPase old-35; AltName:
Full=Polynucleotide phosphorylase 1; Short=PNPase 1;
AltName: Full=Polynucleotide phosphorylase-like protein;
Flags: Precursor
gi|62988884|gb|AAY24271.1| unknown [Homo sapiens]
gi|119620492|gb|EAX00087.1| polyribonucleotide nucleotidyltransferase 1, isoform CRA_b [Homo
sapiens]
Length = 783
Score = 134 bits (337), Expect = 9e-30, Method: Composition-based stats.
Identities = 48/247 (19%), Positives = 86/247 (34%), Gaps = 17/247 (6%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE--------EKVPMWIRN 53
R GR +R +S + K GS L + G T +L T T + ++V I
Sbjct: 358 RCDGRDLTSLRNVSCEVDMFKTLHGSALFQRGQTQVLCTVTFDSLESGIKSDQVITAING 417
Query: 54 TKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQII 113
K Y P +T K ++ R+ G +AL V+ I
Sbjct: 418 IKDKNFMLHYEFPPYATNEIGKVTGLNRRELGHGAL----AEKALYPVIPRDFPF--TIR 471
Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP 173
+ +V++++G + A+ G +AL D + + V K +
Sbjct: 472 VTSEVLESNGSSSMASACGGSLALMDSGVPISSAVAGVAIGLVTKTDP--EKGEIEDYRL 529
Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
+ D+ ED D+D T+ G I +Q + + A +++++
Sbjct: 530 LTDILGIEDYNGDMDFKIAGTNKG-ITALQADIKLPGIPIKIVMEAIQQASVAKKEILQI 588
Query: 234 QKDVISN 240
IS
Sbjct: 589 MNKTISK 595
Score = 76.0 bits (185), Expect = 4e-12, Method: Composition-based stats.
Identities = 41/218 (18%), Positives = 78/218 (35%), Gaps = 25/218 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTA---TLEEKVPMWIRNTKHGWITAEYGMLP 67
R++ ++ ++++A+GS +V+ GDT ++ TA T + A G +P
Sbjct: 54 RKLEISSGKLARFADGSAVVQSGDTAVMVTAVSKTKPSPSQFMPLVVDYRQKAAAAGRIP 113
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
+ R + R+I R++R + Q++ + +
Sbjct: 114 TNYLRREIGT------SDKEILTSRIIDRSIRPLFPAGYFYDTQVLCNLLAVDGVNEPDV 167
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
AI GA VA G V A+ G++ G +V+ E S+ +
Sbjct: 168 LAINGASVA-------------LSLSDIPWNGPVGAVRIGIIDGEYVVNPTRKEMSSSTL 214
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKD 225
+ IV ++ SAE Q F + +
Sbjct: 215 NLVVAGAPKSQIVMLEASAEN--ILQQDFCHAIKVGVK 250
>gi|85542918|sp|Q5RCW2|PNPT1_PONAB RecName: Full=Polyribonucleotide nucleotidyltransferase 1,
mitochondrial; AltName: Full=Polynucleotide
phosphorylase 1; Short=PNPase 1; Flags: Precursor
Length = 783
Score = 134 bits (337), Expect = 9e-30, Method: Composition-based stats.
Identities = 48/247 (19%), Positives = 86/247 (34%), Gaps = 17/247 (6%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE--------EKVPMWIRN 53
R GR +R +S + K GS L + G T +L T T + ++V I
Sbjct: 358 RCDGRDLTSLRNVSCEVDMFKTLHGSALFQRGQTQVLCTVTFDSLESGIKSDQVITAING 417
Query: 54 TKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQII 113
K Y P +T K ++ R+ G +AL V+ I
Sbjct: 418 IKDKNFMLHYEFPPYATNEIGKVTGLNRRELGHGAL----AEKALYPVIPRDFPF--TIR 471
Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP 173
+ +V++++G + A+ G +AL D + + V K +
Sbjct: 472 VTSEVLESNGSSSMASACGGSLALMDSGVPISSAVAGVAIGLVTKTDP--EKGEIEDYRL 529
Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
+ D+ ED D+D T+ G I +Q + + A +++++
Sbjct: 530 LTDILGIEDYNGDMDFKIAGTNKG-ITALQADIKLPGIPIKIVMEAIQQASVAKKEILQI 588
Query: 234 QKDVISN 240
IS
Sbjct: 589 MNKTISK 595
Score = 75.7 bits (184), Expect = 6e-12, Method: Composition-based stats.
Identities = 41/218 (18%), Positives = 78/218 (35%), Gaps = 25/218 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTA---TLEEKVPMWIRNTKHGWITAEYGMLP 67
R++ ++ ++++A+GS +V+ GDT ++ TA T + A G +P
Sbjct: 54 RKLEISSGKLARFADGSAVVQSGDTAVMVTAVSKTKPSPSQFMPLVVDYRQKAAAAGRIP 113
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
+ R + R+I R++R + Q++ + +
Sbjct: 114 TNYLRREIGT------SDKEILTSRIIDRSIRPLFPAGYFYDTQVLCNLLAVDGVNEPDV 167
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
AI GA VA G V A+ G++ G +V+ E S+ +
Sbjct: 168 LAINGASVA-------------LSLSDIPWNGPVGAVRIGIIDGECVVNPTRKEMSSSTL 214
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKD 225
+ IV ++ SAE Q F + +
Sbjct: 215 NLVVAGAPKSQIVMLEASAEN--ILQQDFCHAIKVGVK 250
>gi|197100218|ref|NP_001125193.1| polyribonucleotide nucleotidyltransferase 1, mitochondrial [Pongo
abelii]
gi|55727278|emb|CAH90395.1| hypothetical protein [Pongo abelii]
Length = 703
Score = 134 bits (337), Expect = 9e-30, Method: Composition-based stats.
Identities = 48/247 (19%), Positives = 86/247 (34%), Gaps = 17/247 (6%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE--------EKVPMWIRN 53
R GR +R +S + K GS L + G T +L T T + ++V I
Sbjct: 278 RCDGRDLTSLRNVSCEVDMFKTLHGSALFQRGQTQVLCTVTFDSLESGIKSDQVITAING 337
Query: 54 TKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQII 113
K Y P +T K ++ R+ G +AL V+ I
Sbjct: 338 IKDKNFMLHYEFPPYATNEIGKVTGLNRRELGHGAL----AEKALYPVIPRDFPF--TIR 391
Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP 173
+ +V++++G + A+ G +AL D + + V K +
Sbjct: 392 VTSEVLESNGSSSMASACGGSLALMDSGVPISSAVAGVAIGLVTKTDP--EKGEIEDYRL 449
Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
+ D+ ED D+D T+ G I +Q + + A +++++
Sbjct: 450 LTDILGIEDYNGDMDFKIAGTNKG-ITALQADIKLPGIPIKIVMEAIQQASVAKKEILQI 508
Query: 234 QKDVISN 240
IS
Sbjct: 509 MNKTISK 515
Score = 44.8 bits (104), Expect = 0.011, Method: Composition-based stats.
Identities = 33/191 (17%), Positives = 58/191 (30%), Gaps = 24/191 (12%)
Query: 38 LTTA---TLEEKVPMWIRNTKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMI 94
+ TA T + A G +P + R + R+I
Sbjct: 1 MVTAVSKTKPSPSQFMPLVVDYRQKAAAAGRIPTNYLRREIGT------SDKEILTSRII 54
Query: 95 GRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLS 154
R++R + Q++ + + AI GA VA
Sbjct: 55 DRSIRPLFPAGYFYDTQVLCNLLAVDGVNEPDVLAINGASVA-------------LSLSD 101
Query: 155 QVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQD 214
G V A+ G++ G +V+ E S+ ++ IV ++ SAE Q
Sbjct: 102 IPWNGPVGAVRIGIIDGECVVNPTRKEMSSSTLNLVVAGAPKSQIVMLEASAEN--ILQQ 159
Query: 215 HFFAMLNLAKD 225
F + +
Sbjct: 160 DFCHAIKVGVK 170
>gi|20372922|emb|CAD30289.1| polynucleotide phosphorylase-like protein [Homo sapiens]
gi|31657166|gb|AAH53660.1| Polyribonucleotide nucleotidyltransferase 1 [Homo sapiens]
Length = 783
Score = 134 bits (337), Expect = 9e-30, Method: Composition-based stats.
Identities = 48/247 (19%), Positives = 86/247 (34%), Gaps = 17/247 (6%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE--------EKVPMWIRN 53
R GR +R +S + K GS L + G T +L T T + ++V I
Sbjct: 358 RCDGRDLTSLRNVSCEVDMFKTLHGSALFQRGQTQVLCTVTFDSLESGIKSDQVITAING 417
Query: 54 TKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQII 113
K Y P +T K ++ R+ G +AL V+ I
Sbjct: 418 IKDKNFMLHYEFPPYATNEIGKVTGLNRRELGHGAL----AEKALYPVIPRDFPF--TIR 471
Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP 173
+ +V++++G + A+ G +AL D + + V K +
Sbjct: 472 VTSEVLESNGSSSMASACGGSLALMDSGVPISSAVAGVAIGLVTKTDP--EKGEIEDYRL 529
Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
+ D+ ED D+D T+ G I +Q + + A +++++
Sbjct: 530 LTDILGIEDYNGDMDFKIAGTNKG-ITALQADIKLPGIPIKIVMEAIQQASVAKKEILQI 588
Query: 234 QKDVISN 240
IS
Sbjct: 589 MNKTISK 595
Score = 76.0 bits (185), Expect = 4e-12, Method: Composition-based stats.
Identities = 41/218 (18%), Positives = 78/218 (35%), Gaps = 25/218 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTA---TLEEKVPMWIRNTKHGWITAEYGMLP 67
R++ ++ ++++A+GS +V+ GDT ++ TA T + A G +P
Sbjct: 54 RKLEISSGKLARFADGSAVVQSGDTAVMVTAVSKTKPSPSQFMPLVVDYRQKAAAAGRIP 113
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
+ R + R+I R++R + Q++ + +
Sbjct: 114 TNYLRREVGT------SDKEILTSRIIDRSIRPLFPAGYFYDTQVLCNLLAVDGVNEPDV 167
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
AI GA VA G V A+ G++ G +V+ E S+ +
Sbjct: 168 LAINGASVA-------------LSLSDIPWNGPVGAVRIGIIDGEYVVNPTRKEMSSSTL 214
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKD 225
+ IV ++ SAE Q F + +
Sbjct: 215 NLVVAGAPKSQIVMLEASAEN--ILQQDFCHAIKVGVK 250
>gi|153814912|ref|ZP_01967580.1| hypothetical protein RUMTOR_01127 [Ruminococcus torques ATCC 27756]
gi|317500424|ref|ZP_07958648.1| polyribonucleotide nucleotidyltransferase [Lachnospiraceae
bacterium 8_1_57FAA]
gi|331089569|ref|ZP_08338468.1| polyribonucleotide nucleotidyltransferase [Lachnospiraceae
bacterium 3_1_46FAA]
gi|145847943|gb|EDK24861.1| hypothetical protein RUMTOR_01127 [Ruminococcus torques ATCC 27756]
gi|316898179|gb|EFV20226.1| polyribonucleotide nucleotidyltransferase [Lachnospiraceae
bacterium 8_1_57FAA]
gi|330404937|gb|EGG84475.1| polyribonucleotide nucleotidyltransferase [Lachnospiraceae
bacterium 3_1_46FAA]
Length = 695
Score = 134 bits (337), Expect = 9e-30, Method: Composition-based stats.
Identities = 41/242 (16%), Positives = 74/242 (30%), Gaps = 12/242 (4%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT--LEEKVPMWIRNTKHGWI 59
R GR +Q+R ++ + GS + G T + T T +
Sbjct: 312 RPDGRAIDQIRPLAAEVDLLPRVHGSAMFTRGQTQ-ICTVTTLAPLSEAQRLDGLDESET 370
Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119
T Y V S G R + RAL V+ A I +
Sbjct: 371 TKRYMHHYNFPSYSVGETKPSRGPGRREIGHGALAERALLPVLPSEAEFPYAIRTVSETF 430
Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179
+++G T A++ + ++L ++ V + D+
Sbjct: 431 ESNGSTSQASVCASSMSLMTAGVPIKAAVAGISAGLV-------TGDTDDDYLVLTDIQG 483
Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI-KLQKDVI 238
ED D+D T G I +Q + ++ ++ K +I ++ I
Sbjct: 484 LEDFFGDMDFKVAGTHKG-ITAIQMDIKIHGLTRPIIEEAISATKKARTYIIDEIMNKAI 542
Query: 239 SN 240
S
Sbjct: 543 SE 544
Score = 86.8 bits (213), Expect = 2e-15, Method: Composition-based stats.
Identities = 37/234 (15%), Positives = 75/234 (32%), Gaps = 27/234 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----HGWITAEYGML 66
R + + V+K A G+ L+ +GDT +L T+T EK I + G +
Sbjct: 12 RTLRVDVDRVAKQANGAVLMHYGDTTVLCTSTASEKPRDGIDFFPLSVEYNERLYAVGKI 71
Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
P R G+ + R+I R +R + + + D
Sbjct: 72 PGGFNKR------EGKASENAILTDRVIDRPMRPLFPKDYRNDVTLENLVMSVDQDCSPE 125
Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
A+ GA +A G ++ G++ G + + + D
Sbjct: 126 LTAMLGASLAT-------------SISDIPFDGPISTTQVGLIDGEFVFNPTAAQREVSD 172
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
+ T ++ ++ A +D + A + +I +++
Sbjct: 173 LALTVASTKE-KVIMIEAGANEVP--EDRMIEAIFAAHELNQKVIAFFDTIVAE 223
>gi|239917238|ref|YP_002956796.1| guanosine pentaphosphate synthetase I/polynucleotide phosphorylase
[Micrococcus luteus NCTC 2665]
gi|281414287|ref|ZP_06246029.1| polynucleotide phosphorylase/polyadenylase [Micrococcus luteus NCTC
2665]
gi|259534137|sp|C5C9U0|PNP_MICLC RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|239838445|gb|ACS30242.1| guanosine pentaphosphate synthetase I/polynucleotide phosphorylase
[Micrococcus luteus NCTC 2665]
Length = 753
Score = 134 bits (337), Expect = 9e-30, Method: Composition-based stats.
Identities = 40/242 (16%), Positives = 83/242 (34%), Gaps = 14/242 (5%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
+R+ GR +R+++ V GS + + G+T ++ TL E+ +
Sbjct: 347 VRIDGRGLTDIRKLTAEVEVLPRVHGSAIFERGETQIMGVTTLNMLKMEQQIDSLSPETA 406
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P STG + + R+ G RAL V+ I
Sbjct: 407 KRYMHHYNFPPYSTGETGRVGSPKRREIGHGAL----AERALVPVLPAREEFPYAIRQVS 462
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+ + ++G T ++ + ++L + + + V +A G + D
Sbjct: 463 EALSSNGSTSMGSVCASTLSLLNAGVPLRAHVAGIAMGLV-----SAEVDGQTQYAALTD 517
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED+ D+D T + +Q + + L A++ ++ +
Sbjct: 518 ILGAEDAFGDMDFKVAGTAEF-VTAIQLDTKLDGIPASVLASALTQAREARLHILSVLNA 576
Query: 237 VI 238
I
Sbjct: 577 AI 578
Score = 70.6 bits (171), Expect = 2e-10, Method: Composition-based stats.
Identities = 38/249 (15%), Positives = 75/249 (30%), Gaps = 34/249 (13%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGD-THLLTTATLE----EKVPMWIRNTKHGWITAEYGM 65
R + +++ A G+ +V + T +L+ T+ E + G
Sbjct: 21 RTVRFETGRLAQQAAGAAMVYLDEETSMLSATTVGKSPREGFDFFPLTVDVEERMYASGR 80
Query: 66 LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125
+P S R GR + R+I R LR Q+++ I D
Sbjct: 81 IPGSFFRR------EGRPSTDAILTCRLIDRPLRPAFVKGIRNEVQVVVTVTSIAPDEIY 134
Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185
T AI A ++ +++ + G + + +
Sbjct: 135 DTVAINAASLSTQLSGLPFSGPIGGVRMALMDD--------GSGARQWVAFPKHSQLKGA 186
Query: 186 DVDANFVM---TDSGHIVEVQGSAERATFS-----------QDHFFAMLNLAKDRIADLI 231
+ D I+ V+ A +++ ++ L AK I L
Sbjct: 187 VFNMAVAGRVVGDDVAIMMVEAEATPDSWTLVKERGAQAPTEEIVAEGLEAAKPFIRALC 246
Query: 232 KLQKDVISN 240
+ Q D++
Sbjct: 247 EAQADLVKR 255
>gi|297202779|ref|ZP_06920176.1| polyribonucleotide nucleotidyltransferase [Streptomyces sviceus
ATCC 29083]
gi|197716767|gb|EDY60801.1| polyribonucleotide nucleotidyltransferase [Streptomyces sviceus
ATCC 29083]
Length = 740
Score = 134 bits (337), Expect = 1e-29, Method: Composition-based stats.
Identities = 40/241 (16%), Positives = 81/241 (33%), Gaps = 14/241 (5%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +R ++ GS + + G+T +L TL E+ +
Sbjct: 339 RIDGRGVTDIRTLAAEVEAIPRVHGSAVFERGETQILGVTTLNMLRMEQQLDTLSPVTRK 398
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P STG + + R+ G RAL V+ I +
Sbjct: 399 RYMHNYNFPPYSTGETGRVGSPKRREIGHGAL----AERALVPVLPTREEFPYAIRQVSE 454
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ ++G T ++ + ++L + ++ + + + G + D+
Sbjct: 455 ALSSNGSTSMGSVCASTMSLLNAGVPLKAPVAGIAMGLISQEID-----GETHYVTLTDI 509
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED+ D+D T + +Q + A L A+D ++ + +
Sbjct: 510 LGAEDAFGDMDFKVAGTKEF-VTALQLDTKLDGIPASVLAAALKQARDARLHILDVMMEA 568
Query: 238 I 238
I
Sbjct: 569 I 569
Score = 83.0 bits (203), Expect = 3e-14, Method: Composition-based stats.
Identities = 42/250 (16%), Positives = 72/250 (28%), Gaps = 40/250 (16%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGD-THLLTTATLEEKVPMWIRNT----KHGWITAEYGM 65
R I ++K A GS + D T +L+ T + + G
Sbjct: 20 RTIRFETGRLAKQAAGSAVAYLDDDTMVLSATTASKNPKDQLDFFPLTVDVEERMYAAGK 79
Query: 66 LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125
+P S R GR + R+I R LR Q++ + D
Sbjct: 80 IPGSFFRR------EGRPSEDAILTCRLIDRPLRPSFKKGLRNEIQVVATIMALNPDHLY 133
Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185
AI A + G + + ++ G + + E
Sbjct: 134 DVVAINAASASTQLAG-------------LPFSGPIGGVRVALINGQWVAFPTHSELEDA 180
Query: 186 DVDANFVMT----DSGHIVEVQGSAERATF----------SQDHFFAMLNLAKDRIADLI 231
D I+ V+ A T +++ A L AK I L
Sbjct: 181 VFDMVVAGRALEDGDVAIMMVEAEATEKTIQLVKGGAEAPTEEVVAAGLEAAKPFIKVLC 240
Query: 232 KLQKDVISNE 241
+ Q D ++++
Sbjct: 241 RAQAD-LASK 249
>gi|254519178|ref|ZP_05131234.1| polyribonucleotide nucleotidyltransferase [Clostridium sp.
7_2_43FAA]
gi|226912927|gb|EEH98128.1| polyribonucleotide nucleotidyltransferase [Clostridium sp.
7_2_43FAA]
Length = 704
Score = 134 bits (337), Expect = 1e-29, Method: Composition-based stats.
Identities = 43/241 (17%), Positives = 81/241 (33%), Gaps = 16/241 (6%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHG 57
R R +Q+R IS + G+ L G T ++T AT + ++ I +
Sbjct: 312 RPDERAFDQVRPISCEVGILPRTHGTGLFTRGLTQVMTVATLGAVGDIQIIDGIGEEESK 371
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y S G R+ G RAL ++ I + +
Sbjct: 372 RYMHHYNFPGYSVGEVKPLRGPGRREIGHGAL----AERALEPLIPSEEEFPYTIRLVSE 427
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
V+ ++G T A++ G+ +AL D ++ + + + + + D+
Sbjct: 428 VLSSNGSTSQASVCGSTLALLDAGVPLKRPAAGIAMGLITSED-------LTREEVLTDI 480
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T G I +Q + S + A+ ++ +
Sbjct: 481 QGIEDFFADMDFKVAGTVEG-ITSIQVDTKIKGLSFKVIEDAIMGARKARLHILDKISEC 539
Query: 238 I 238
I
Sbjct: 540 I 540
Score = 84.5 bits (207), Expect = 1e-14, Method: Composition-based stats.
Identities = 42/231 (18%), Positives = 75/231 (32%), Gaps = 27/231 (11%)
Query: 12 REISLTRRVSKYAEG-SCLVKFGDTHLLTTATLEEKVPMWIRNTK----HGWITAEYGML 66
RE+ L + + +GDT +LT EK I + G +
Sbjct: 12 RELKLEFGKIGMLSNLAAFISYGDTVILTNVNASEKPREGIDFFPLSVEYEERLYSVGKI 71
Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
P R GR + R + R LR + Q++ ++ D
Sbjct: 72 PGGFIKR------EGRPSENAILFGRAVDRPLRPLFPKGYRNDVQVVCTVVSVEKDNLPE 125
Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
AI A ++L S VAA+ G++ G I++ E +
Sbjct: 126 ILAINAASLSLC-------------LSSIPFTTPVAAVQVGLINGNFILNPTSKEREESE 172
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
+ T ++ ++ + +D A + D D+IK Q++
Sbjct: 173 LQLTVCATSE-RVMMIEAGGQE--IPEDVMLAAIKFGFDSCQDIIKFQEEA 220
>gi|227827677|ref|YP_002829457.1| exosome complex exonuclease Rrp41 [Sulfolobus islandicus M.14.25]
gi|238619848|ref|YP_002914674.1| exosome complex exonuclease Rrp41 [Sulfolobus islandicus M.16.4]
gi|227459473|gb|ACP38159.1| exosome complex exonuclease 1 [Sulfolobus islandicus M.14.25]
gi|238380918|gb|ACR42006.1| exosome complex exonuclease 1 [Sulfolobus islandicus M.16.4]
Length = 245
Score = 134 bits (337), Expect = 1e-29, Method: Composition-based stats.
Identities = 53/242 (21%), Positives = 102/242 (42%), Gaps = 23/242 (9%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKV-PMWIRNTKHGWIT 60
R+ GR+ +++R I + V K A+GS + + G+T + +++ P + +
Sbjct: 16 RIDGRKPDELRSIKIELGVLKNADGSAIFEMGNTKAIAAVYGPKEMHPRHLSLPDRAVLR 75
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
Y M P ST R + R E+ ++I AL S V + I + +++Q
Sbjct: 76 VRYHMTPFSTDERK-----NPAPSRREIELSKVIREALESAVLVELFPRTAIDVFTEILQ 130
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
AD G+R ++ A +AL D M D +A ++ G G ++DL+
Sbjct: 131 ADAGSRLVSLMAASLALADAGIPMRDL-------------IAGVAVGKADGVIVLDLNEP 177
Query: 181 EDSTIDVDANF-VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
ED + D +M + Q + + + F +LA I + L+++ +
Sbjct: 178 EDMWGEADMPVAMMPSLNQVTLFQLNGN---MTPEEFRQAFDLAVKGINIIYNLEREALK 234
Query: 240 NE 241
++
Sbjct: 235 SK 236
>gi|302341929|ref|YP_003806458.1| ribonuclease PH [Desulfarculus baarsii DSM 2075]
gi|301638542|gb|ADK83864.1| ribonuclease PH [Desulfarculus baarsii DSM 2075]
Length = 232
Score = 134 bits (337), Expect = 1e-29, Method: Composition-based stats.
Identities = 94/238 (39%), Positives = 142/238 (59%), Gaps = 12/238 (5%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R+ GR QMR + ++ V+ YAEGS + FG T +L TA++E+ P ++ GWITA
Sbjct: 3 RIDGRNPGQMRPVVISGGVNPYAEGSAICAFGQTKVLCTASVEQGAPRFLEGAGQGWITA 62
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
EY MLPR+T R R+ Q GR++EI R++GRALR+ DL+AL I IDCDV+ A
Sbjct: 63 EYAMLPRATHTRTGRDHA---QAGRAKEISRLVGRALRAAADLAALDGYTIRIDCDVLVA 119
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
DGGTRTAA++G WVAL L+ + + + A+S G + G +VDL Y E
Sbjct: 120 DGGTRTAAVSGGWVALALALRGLGLQPPRQVM---------ALSAGRVDGRLLVDLCYAE 170
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
DS+ ++D N V+ G ++E+QG+ ER FS + ++ +++ D++ Q ++
Sbjct: 171 DSSAELDLNMVLAADGQLIEIQGTGERGVFSPEELMELIAISRQAAGDIVAAQLAAVN 228
>gi|229584881|ref|YP_002843383.1| exosome complex exonuclease Rrp41 [Sulfolobus islandicus M.16.27]
gi|228019931|gb|ACP55338.1| exosome complex exonuclease 1 [Sulfolobus islandicus M.16.27]
Length = 245
Score = 134 bits (337), Expect = 1e-29, Method: Composition-based stats.
Identities = 53/242 (21%), Positives = 102/242 (42%), Gaps = 23/242 (9%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKV-PMWIRNTKHGWIT 60
R+ GR+ +++R I + V K A+GS + + G+T + +++ P + +
Sbjct: 16 RIDGRKPDELRSIKIELGVLKNADGSAIFEMGNTKAIAAVYGPKEMHPRHLSLPDRAVLR 75
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
Y M P ST R + R E+ ++I AL S V + I + +++Q
Sbjct: 76 VRYHMTPFSTDERK-----NPAPSRREIELSKVIREALESAVLVELFPRTAIDVFTEILQ 130
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
AD G+R ++ A +AL D M D +A ++ G G ++DL+
Sbjct: 131 ADAGSRLVSLMAASLALADAGIPMRDL-------------IAGVAVGKADGVIVLDLNEA 177
Query: 181 EDSTIDVDANF-VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
ED + D +M + Q + + + F +LA I + L+++ +
Sbjct: 178 EDMWGEADMPVAMMPSLNQVTLFQLNGN---MTPEEFRQAFDLAVKGINIIYNLEREALK 234
Query: 240 NE 241
++
Sbjct: 235 SK 236
>gi|323474735|gb|ADX85341.1| exosome complex exonuclease 1 [Sulfolobus islandicus REY15A]
Length = 245
Score = 134 bits (337), Expect = 1e-29, Method: Composition-based stats.
Identities = 53/242 (21%), Positives = 102/242 (42%), Gaps = 23/242 (9%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKV-PMWIRNTKHGWIT 60
R+ GR+ +++R I + V K A+GS + + G+T + +++ P + +
Sbjct: 16 RIDGRKPDELRSIKIELGVLKNADGSAIFEMGNTKAIAAVYGPKEMHPRHLSLPDRAVLR 75
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
Y M P ST R + R E+ ++I AL S V + I + +++Q
Sbjct: 76 VRYHMTPFSTDERK-----NPAPSRREIELSKVIREALESAVLVELFPRTAIDVFTEILQ 130
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
AD G+R ++ A +AL D M D +A ++ G G ++DL+
Sbjct: 131 ADAGSRLVSLMAASLALADAGIPMRDL-------------IAGVAVGKADGVIVLDLNEP 177
Query: 181 EDSTIDVDANF-VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
ED + D +M + Q + + + F +LA I + L+++ +
Sbjct: 178 EDMWGEADMPVAMMPSLNQVTLFQLNGN---MTPEEFRQAFDLAVKGINIIYNLEREALK 234
Query: 240 NE 241
++
Sbjct: 235 SK 236
>gi|282858733|ref|ZP_06267886.1| polyribonucleotide nucleotidyltransferase [Prevotella bivia
JCVIHMP010]
gi|282588482|gb|EFB93634.1| polyribonucleotide nucleotidyltransferase [Prevotella bivia
JCVIHMP010]
Length = 748
Score = 134 bits (337), Expect = 1e-29, Method: Composition-based stats.
Identities = 48/243 (19%), Positives = 87/243 (35%), Gaps = 18/243 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +++R I GS L + G+T L+T TL +EK+ + +
Sbjct: 316 RMDGRATDEIRHIWSEVDTLPMPHGSALFQRGETMSLSTCTLGTKMDEKMVDNVLEKSYQ 375
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P STG + V R+ G RAL++ + + +
Sbjct: 376 RFLLHYNFPPFSTGEAKAQRGVGRREIGHGHL----AWRALKNQIPTD--FPYTVRLVSQ 429
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+++++G + A + +AL D M+ + + + G + D+
Sbjct: 430 ILESNGSSSMATVCAGTLALLDAGVPMKKPVSGIAMGLIKN-------PGEDKYAILSDI 482
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T G I Q + S + L AK ++ +
Sbjct: 483 LGDEDHLGDMDFKTTGTKDG-ITATQMDIKCDGLSYEILEKALMQAKAGREHILGKMMET 541
Query: 238 ISN 240
+S
Sbjct: 542 MSE 544
Score = 98.8 bits (244), Expect = 6e-19, Method: Composition-based stats.
Identities = 33/228 (14%), Positives = 73/228 (32%), Gaps = 19/228 (8%)
Query: 10 QMREISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPR 68
R IS+ V+K A+G+ +++ G+T LL T ++ E
Sbjct: 3 DGRTISIETGKVAKQADGAAMLRMGNTVLLATVCAAKEAVPGTDFMPLQVDYREQYSAAG 62
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
G+ R++ R LR + +
Sbjct: 63 RFP--GGFTKREGKANDDEILTSRLVDRVLRPLFPADYHTEVY-------------VQVM 107
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
++ + D L + ++ ++ + + G +++ + + D+D
Sbjct: 108 LLSADGIDQPDALAGFAASAALAASDIPIEYPISEVRVARINGEYVINPTFPQMKEADMD 167
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
T +I+ V+ E S+ L A + I + +LQ++
Sbjct: 168 IMVGATKD-NIMMVE--GEMDEVSELDLIGALKAAHEAIKPMCELQEE 212
>gi|119719494|ref|YP_919989.1| exosome complex exonuclease 1 [Thermofilum pendens Hrk 5]
gi|119524614|gb|ABL77986.1| ribosomal RNA-processing protein RRP41/SKI6 [Thermofilum pendens
Hrk 5]
Length = 245
Score = 134 bits (337), Expect = 1e-29, Method: Composition-based stats.
Identities = 63/242 (26%), Positives = 98/242 (40%), Gaps = 23/242 (9%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEK-VPMWIRNTKHGWIT 60
R+ GR ++MR + + V K A+GS V+ G+ +L + +P +
Sbjct: 16 RVDGRLPDEMRPLRVEAGVLKNADGSAYVELGNNKVLAAVYGPREPMPRHEALPDRAILK 75
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
Y MLP S R S + R E+ ++I AL V L+ I + +++
Sbjct: 76 CRYSMLPFSVAERK-----SPQPSRREIELSKVIREALAPAVFLNEYPRTSIEVYIHILE 130
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA+I VAL D M D VAAI+ G + ++D++
Sbjct: 131 ADGGTRTASIIAGSVALADAGIAMRDL-------------VAAIAVGKIGNVLVLDINGI 177
Query: 181 EDSTIDVDANF-VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
ED D D +M G I +Q F+ L LA+ + Q +
Sbjct: 178 EDQYGDGDMPIAMMPQRGEITLLQADG---VFTPQEIEEALRLAQKAFQKIYAEQVRALK 234
Query: 240 NE 241
+
Sbjct: 235 TK 236
>gi|148284140|ref|YP_001248230.1| tRNA nucleotidyltransferase [Orientia tsutsugamushi str. Boryong]
gi|146739579|emb|CAM79326.1| tRNA nucleotidyltransferase [Orientia tsutsugamushi str. Boryong]
Length = 251
Score = 134 bits (337), Expect = 1e-29, Method: Composition-based stats.
Identities = 114/242 (47%), Positives = 157/242 (64%), Gaps = 7/242 (2%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKH-GWI 59
MRL R++++MR IS+ ++GSCL K G+TH++ +AT+EE +P++++N K GW+
Sbjct: 1 MRLCSRKDSEMRPISIELGAMLNSKGSCLTKIGNTHVICSATVEESLPLFLKNKKQGGWV 60
Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119
TAEY MLP S+ RVKRE + G+ GR+QEIQR+I RA+R+ VDL LG RQI+IDCDVI
Sbjct: 61 TAEYSMLPGSSLQRVKREGIQGK-SGRTQEIQRLISRAMRAAVDLKLLGERQILIDCDVI 119
Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179
ADGGTR A+ITG +VA+ + + N + VAAISCG+ G IVDLDY
Sbjct: 120 NADGGTRAASITGGYVAMCLAVNKLMQEKNLAV--YPILYQVAAISCGISNGRVIVDLDY 177
Query: 180 GEDSTIDVDANFVMTDSG---HIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
EDS +VDANFV +G IVE+Q +AE+ F + ML LA+ I + +Q
Sbjct: 178 QEDSCAEVDANFVFRRAGTIIEIVEIQVAAEKKAFVDEQVIQMLKLAQKAINHIFDIQNQ 237
Query: 237 VI 238
+
Sbjct: 238 SL 239
>gi|14520826|ref|NP_126301.1| exosome complex exonuclease Rrp41 [Pyrococcus abyssi GE5]
gi|29337010|sp|Q9V119|ECX1_PYRAB RecName: Full=Probable exosome complex exonuclease 1
gi|170292234|pdb|2PNZ|A Chain A, Crystal Structure Of The P. Abyssi Exosome Rnase Ph Ring
Complexed With Udp And Gmp
gi|170292236|pdb|2PO0|A Chain A, Crystal Structure Of The P. Abyssi Exosome Rnase Ph Ring
Complexed With Adp In Double Conformation
gi|170292239|pdb|2PO1|A Chain A, Crystal Structure Of The P. Abyssi Exosome Rnase Ph Ring
Complexed With A Single Stranded 10-Mer Poly(A) Rna
gi|170292241|pdb|2PO2|A Chain A, Crystal Structure Of The P. Abyssi Exosome Rnase Ph Ring
Complexed With Cdp
gi|5458042|emb|CAB49532.1| rph ribonuclease PH, exosome complex exonuclease [Pyrococcus abyssi
GE5]
Length = 249
Score = 134 bits (337), Expect = 1e-29, Method: Composition-based stats.
Identities = 61/242 (25%), Positives = 101/242 (41%), Gaps = 23/242 (9%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEK-VPMWIRNTKHGWIT 60
R+ GR++ ++R I + V K A GS +++G ++ + P ++ +
Sbjct: 17 RIDGRKKYELRPIKMEVGVLKNANGSAYIEWGKNKIIAAVYGPRELHPKHLQRPDRAILR 76
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
Y M P S R K RS EI ++I AL + L I + +V+Q
Sbjct: 77 VRYNMAPFSVEERKKPG-----PDRRSIEISKVIKGALEPALILEMFPRTAIDVFIEVLQ 131
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
AD GTR A IT A +AL D M D VAA + G + G ++DL+
Sbjct: 132 ADAGTRVAGITAASLALADAGIPMRDL-------------VAACAAGKIEGEIVLDLNKE 178
Query: 181 EDSTIDVDANF-VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
ED+ + D +M I +Q ++D F + LA + + Q++ +
Sbjct: 179 EDNYGEADVPVAIMPLKNDITLLQMDGY---LTKDEFIEAVKLAIKGAKAVYQKQREALK 235
Query: 240 NE 241
+
Sbjct: 236 EK 237
>gi|302537281|ref|ZP_07289623.1| polyribonucleotide nucleotidyltransferase [Streptomyces sp. C]
gi|302446176|gb|EFL17992.1| polyribonucleotide nucleotidyltransferase [Streptomyces sp. C]
Length = 739
Score = 134 bits (337), Expect = 1e-29, Method: Composition-based stats.
Identities = 39/242 (16%), Positives = 81/242 (33%), Gaps = 14/242 (5%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
+R+ GR +R ++ GS L + G+T +L TL E+ +
Sbjct: 338 VRIDGRGLTDIRTLAAEVEAIPRVHGSALFERGETQILGVTTLNMLRMEQQLDTLSPVTR 397
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P S G + + R+ G RA+ V+ I
Sbjct: 398 KRYMHNYNFPPYSVGETGRVGSPKRREIGHGAL----AERAIVPVLPTREEFPYAIRQVS 453
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+ + ++G T ++ + ++L + ++ + + + G + D
Sbjct: 454 EALGSNGSTSMGSVCASTMSLLNAGVPLKAPVAGIAMGLISQEID-----GKTHYVALTD 508
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED+ D+D T + +Q + A L A+D ++ + +
Sbjct: 509 ILGAEDAFGDMDFKVAGTKEF-VTALQLDTKLDGIPASVLAAALTQARDARLHILDVMME 567
Query: 237 VI 238
I
Sbjct: 568 AI 569
Score = 79.1 bits (193), Expect = 5e-13, Method: Composition-based stats.
Identities = 40/240 (16%), Positives = 66/240 (27%), Gaps = 39/240 (16%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGD-THLLTTATLEEKVPMWIRNT----KHGWITAEYGM 65
R I +++ A GS + D T +L+ T +K + G
Sbjct: 20 RTIRFETGRLARQAAGSAVAYLDDDTMVLSATTASKKPKDQLDFFPLTVDVEERQYAAGK 79
Query: 66 LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125
+P S R GR + R+I R LR Q++ + D
Sbjct: 80 IPGSFFRR------EGRPSEDAILTCRLIDRPLRPSFKKGLRNEIQVVATVMALNPDHLY 133
Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185
AI A + G + + ++ G + + E
Sbjct: 134 DVIAINAASASTQLAG-------------LPFSGPIGGVRVALIKGQWVAFPTHTELEDA 180
Query: 186 DVDANFVMT----DSGHIVEVQGSAERATF----------SQDHFFAMLNLAKDRIADLI 231
D I+ V+ A T +++ A L AK I L
Sbjct: 181 VFDMVVAGRALEDGDVAIMMVEAEATEQTIALVKGGAEAPTEEIVAAGLEAAKPFIKVLC 240
>gi|302338872|ref|YP_003804078.1| ribonuclease PH [Spirochaeta smaragdinae DSM 11293]
gi|301636057|gb|ADK81484.1| ribonuclease PH [Spirochaeta smaragdinae DSM 11293]
Length = 236
Score = 134 bits (337), Expect = 1e-29, Method: Composition-based stats.
Identities = 94/229 (41%), Positives = 145/229 (63%), Gaps = 2/229 (0%)
Query: 11 MREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRST 70
MR++ + GSCL +GDT ++ T +LE++VP ++ GW+TAEYGMLP ST
Sbjct: 1 MRDVQFQTSYLIHPAGSCLASYGDTKVICTVSLEDRVPSFLEGRGCGWLTAEYGMLPGST 60
Query: 71 GNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAI 130
G +++ G++ GRS EIQR+IGR+LR+ VD+ LG R + +DCDVIQADGGTRTA++
Sbjct: 61 GG-GRKQREIGKRDGRSTEIQRLIGRSLRASVDMEKLGERTLTVDCDVIQADGGTRTASV 119
Query: 131 TGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDAN 190
+G WVAL++ L + + + LKG +AA+S G++ G + DLDY DS +VD N
Sbjct: 120 SGGWVALYEALSALAEREGRGGADYYLKGQLAAVSVGIVDGQVVCDLDYAHDSRAEVDMN 179
Query: 191 FVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
V + VE+QG+ E+ TFS + +++ A + + + + Q+D +
Sbjct: 180 IVKLEE-AFVELQGTGEKGTFSSEQLASLIAAADEGLTFIFQKQRDALK 227
>gi|154509089|ref|ZP_02044731.1| hypothetical protein ACTODO_01606 [Actinomyces odontolyticus ATCC
17982]
gi|153798723|gb|EDN81143.1| hypothetical protein ACTODO_01606 [Actinomyces odontolyticus ATCC
17982]
Length = 781
Score = 134 bits (336), Expect = 1e-29, Method: Composition-based stats.
Identities = 45/242 (18%), Positives = 80/242 (33%), Gaps = 14/242 (5%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKH 56
+R+ GR Q+R +S V GS L + G+T +L TL E+ +
Sbjct: 344 IRMDGRTPRQIRSLSAEVEVLPRVHGSALFQRGETQILGVTTLAMLRMEQQIDNLSPVNA 403
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
+Y P STG + + R+ G RAL V+ I
Sbjct: 404 KRYMHQYNFAPFSTGEVGRVGSPKRREIGHGDL----AERALVPVLPSREDFPYAIRQVS 459
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+ + ++G + ++ + ++L + + + G + D
Sbjct: 460 ETMGSNGSSSMGSVCASTLSLLQAGVPLRAPVAGIAMGLMT-----GEVDGQFKAVTLTD 514
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T I +Q + A L A+D ++ L
Sbjct: 515 ILGAEDGFGDMDFKVAGTRDF-ITALQLDTKLDGIDSQVLRAALAQARDARLAILDLINQ 573
Query: 237 VI 238
I
Sbjct: 574 AI 575
Score = 78.0 bits (190), Expect = 1e-12, Method: Composition-based stats.
Identities = 44/242 (18%), Positives = 74/242 (30%), Gaps = 27/242 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGD-THLLTTATLE----EKVPMWIRNTKHGWITAEYGM 65
R + ++K A GS L D T +L+ T+ ++ + G
Sbjct: 22 RTVRFETGRLAKQAAGSALAYLDDSTTVLSATTVGKNPKDQFDFFPLTVDVEERQYAAGR 81
Query: 66 LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125
+P S R GR G + R+I R LR Q++ I D
Sbjct: 82 IPGSFFRR------EGRAGTEAILAARLIDRPLRPGFVKGLRNEVQVVETVLTIDPDDAY 135
Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185
AI A ++ +L+ + VA L + G T
Sbjct: 136 DVLAINAASMSTQIAGLPFTGPIGGTRLALIDDQWVAFPRWSELERSVFNIVVAGRIVTK 195
Query: 186 DVDANFVMTDSGHIVEVQGSAERATF----------SQDHFFAMLNLAKDRIADLIKLQK 235
+ ++ I+ V+ + + ++D L AK I L + Q
Sbjct: 196 E-----DGSEDVAIMMVEAGGGKNQWELIQAGATAPTEDIVADGLEAAKPFIKVLCEAQL 250
Query: 236 DV 237
V
Sbjct: 251 KV 252
>gi|300854507|ref|YP_003779491.1| polyribonucleotide nucleotidyltransferase [Clostridium ljungdahlii
DSM 13528]
gi|300434622|gb|ADK14389.1| polyribonucleotide nucleotidyltransferase [Clostridium ljungdahlii
DSM 13528]
Length = 717
Score = 134 bits (336), Expect = 1e-29, Method: Composition-based stats.
Identities = 45/243 (18%), Positives = 88/243 (36%), Gaps = 16/243 (6%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHG 57
R+ GR +++R IS + G+ L G T ++T AT + ++ + + +
Sbjct: 315 RVDGRAFDEIRPISCEVGILPRTHGTGLFTRGLTQVMTVATLGSLGDVQILDGVGSEESK 374
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y STG R+ G +AL ++ I + +
Sbjct: 375 RYIHHYNFPSYSTGETRPLRGPGRREIGHGAL----AEKALEPLIPSEDQFPYTIRLVSE 430
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
V+ ++G T A+I G+ +AL D ++ + + + + + D+
Sbjct: 431 VLSSNGSTSQASICGSTLALLDAGVPIKRPAAGIAMGLITSED-------LSKEEIVTDI 483
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T+ G I +Q + S++ LN A+ ++
Sbjct: 484 QGIEDFFGDMDFKVGGTEKG-ITAIQFDTKIHGLSENCIRETLNRARTARLFILDKIHKC 542
Query: 238 ISN 240
I
Sbjct: 543 IPE 545
Score = 81.8 bits (200), Expect = 8e-14, Method: Composition-based stats.
Identities = 39/234 (16%), Positives = 77/234 (32%), Gaps = 27/234 (11%)
Query: 12 REISLTRRVSKYAEGSCLV-KFGDTHLLTTATLE----EKVPMWIRNTKHGWITAEYGML 66
R + + +GDT +L A E V + + ++ G +
Sbjct: 15 RTLKVDYGKIGKLSNCAFFISYGDTVVLINANASDKPREGVDFFPLSIEYEERLYSVGKI 74
Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
P R G+ ++ R I R LR + Q++ + D
Sbjct: 75 PGGFIKR------EGKPSEKAILHARAIDRPLRPLFPKGYRNDVQVVCTVVSVDQDNAPD 128
Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
AI GA +AL S V A+S G++ G +++ E S
Sbjct: 129 ILAINGASLALCM-------------SSIPFTTPVGAVSVGLVDGKFVINPGLEERSKSS 175
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
++ TD ++ V+ + +D + + + ++ QK+ ++
Sbjct: 176 LNLTVCATDE-RVMMVEAGGDE--IPEDTMYDAIMFGFEECKKIVAFQKETMNK 226
>gi|323356776|ref|YP_004223172.1| polyribonucleotide nucleotidyltransferase [Microbacterium testaceum
StLB037]
gi|323273147|dbj|BAJ73292.1| polyribonucleotide nucleotidyltransferase [Microbacterium testaceum
StLB037]
Length = 765
Score = 134 bits (336), Expect = 1e-29, Method: Composition-based stats.
Identities = 43/242 (17%), Positives = 80/242 (33%), Gaps = 14/242 (5%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
+R+ GR +R + +V GS + + G+T +L TL E+ +
Sbjct: 351 VRMDGRGLADIRPLDAEVQVIPRVHGSAIFQRGETQILGVTTLNMLKMEQQIDSLSPITS 410
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P STG + + R+ G RAL V+ I
Sbjct: 411 KRYLHHYNFPPYSTGETGRVGSPKRREIGHGFL----AERALVPVLPSREEFPYAIRQVS 466
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+ + ++G T ++ + ++L + + + V G + D
Sbjct: 467 EALGSNGSTSMGSVCASTLSLLNAGVPLRAPVAGIAMGLVTDE-----VDGQTRYAALTD 521
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED+ D+D T I +Q + A L AK+ ++ +
Sbjct: 522 ILGAEDALGDMDFKVAGTAEF-ITAIQLDTKLDGIPSSVLAAALTQAKEARLTILNVLNA 580
Query: 237 VI 238
I
Sbjct: 581 AI 582
>gi|183220916|ref|YP_001838912.1| polynucleotide phosphorylase/polyadenylase [Leptospira biflexa
serovar Patoc strain 'Patoc 1 (Paris)']
gi|189911012|ref|YP_001962567.1| polynucleotide phosphorylase/polyadenylase [Leptospira biflexa
serovar Patoc strain 'Patoc 1 (Ames)']
gi|226702658|sp|B0SH22|PNP_LEPBA RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|226702659|sp|B0SQH8|PNP_LEPBP RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|167775688|gb|ABZ93989.1| Polyribonucleotide nucleotidyltransferase [Leptospira biflexa
serovar Patoc strain 'Patoc 1 (Ames)']
gi|167779338|gb|ABZ97636.1| Polyribonucleotide nucleotidyltransferase (Polynucleotide
phosphorylase; PNPase) [Leptospira biflexa serovar Patoc
strain 'Patoc 1 (Paris)']
Length = 696
Score = 134 bits (336), Expect = 1e-29, Method: Composition-based stats.
Identities = 41/244 (16%), Positives = 81/244 (33%), Gaps = 17/244 (6%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
+R GR+ +++R+IS V GS + G T L TL + + + +K
Sbjct: 313 IRFDGRKTDEIRQISCEIDVLPGPHGSAVFTRGQTQSLGVMTLGTTSDNQRYETLEGSKE 372
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y S G + R+ G RA++ V+ I +
Sbjct: 373 KNFMLHYNFPAFSVGEVRRNSGPGRREIGHGNL----AERAIKKVLPTQTEFPYVIRLVS 428
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
++++++G + A++ +AL + + + S + D
Sbjct: 429 EILESNGSSSMASVCSGTLALMAGGVPISGAVSGIAMGL--------FSDEKGRFAVLSD 480
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T G I Q + + + A+ ++
Sbjct: 481 IAGIEDHFGDMDFKLAGTKKG-ITAFQMDLKVNGLGLEVLQKAIEQAEVGRDHILGEMNK 539
Query: 237 VISN 240
IS+
Sbjct: 540 AISS 543
Score = 96.8 bits (239), Expect = 2e-18, Method: Composition-based stats.
Identities = 42/242 (17%), Positives = 80/242 (33%), Gaps = 32/242 (13%)
Query: 5 GRQENQMREISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKV----PMWIRNTKHGWI 59
GR I+L +K A GS + K G+ LL T E+ + ++
Sbjct: 10 GRD-----SITLETGKWAKQAHGSVVYKTGNLVLLATVCAAEEPKEGQDFFPLTCEYTEK 64
Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119
G P R + + R++ R +R + Q+++
Sbjct: 65 AYSVGRFPGGYFKR------EAKPAEHEVLLSRILDRPIRPMFPEGYFSEVQLLVQVLSA 118
Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179
+ AI A AL +A G + G I++
Sbjct: 119 DKQVSVQGHAINAASAALSVSSIPFAG-------------PIAGARIGRIGGEFILNPTN 165
Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
E + D+D T IV ++ E + S++ A L A++++ + +Q+++
Sbjct: 166 EEITKSDLDLVVAGTKD-AIVMIE--GEASEISKEDMMAALRFAQEQLKFAVAMQEELAK 222
Query: 240 NE 241
Sbjct: 223 KH 224
>gi|302554539|ref|ZP_07306881.1| polyribonucleotide nucleotidyltransferase [Streptomyces
viridochromogenes DSM 40736]
gi|302472157|gb|EFL35250.1| polyribonucleotide nucleotidyltransferase [Streptomyces
viridochromogenes DSM 40736]
Length = 738
Score = 134 bits (336), Expect = 1e-29, Method: Composition-based stats.
Identities = 40/241 (16%), Positives = 81/241 (33%), Gaps = 14/241 (5%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +R ++ GS + + G+T +L TL E+ +
Sbjct: 339 RIDGRGVTDIRTLAAEVEAIPRVHGSAVFERGETQILGVTTLNMLRMEQQLDTLSPVTRK 398
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P STG + + R+ G RAL V+ I +
Sbjct: 399 RYMHNYNFPPYSTGETGRVGSPKRREIGHGAL----AERALVPVLPTREEFPYAIRQVSE 454
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ ++G T ++ + ++L + ++ + + + G + D+
Sbjct: 455 ALSSNGSTSMGSVCASTMSLLNAGVPLKAPVAGIAMGLISQEIE-----GETHYVTLTDI 509
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED+ D+D T + +Q + A L A+D ++ + +
Sbjct: 510 LGAEDAFGDMDFKVAGTKEF-VTALQLDTKLDGIPASVLAAALKQARDARLHILDVMMEA 568
Query: 238 I 238
I
Sbjct: 569 I 569
Score = 84.1 bits (206), Expect = 2e-14, Method: Composition-based stats.
Identities = 43/250 (17%), Positives = 72/250 (28%), Gaps = 40/250 (16%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGD-THLLTTATLEEKVPMWIRNT----KHGWITAEYGM 65
R I ++K A GS + D T +L+ T + + G
Sbjct: 20 RTIRFETGRLAKQAAGSAVAYLDDDTMVLSATTASKNPKDQLDFFPLTVDVEERMYAAGK 79
Query: 66 LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125
+P S R GR + R+I R LR Q++ + D
Sbjct: 80 IPGSFFRR------EGRPSEDAILTCRLIDRPLRPSFKKGLRNEIQVVATIMALNPDHLY 133
Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185
AI A + G + + ++ G + + E
Sbjct: 134 DVVAINAASASTQLAG-------------LPFSGPIGGVRVALINGQWVAFPTHSELEDA 180
Query: 186 DVDANFVMT----DSGHIVEVQGSAERATF----------SQDHFFAMLNLAKDRIADLI 231
D I+ V+ A T +++ A L AK I L
Sbjct: 181 VFDMVVAGRTLEDGDVAIMMVEAEATEKTIQLVKGGAEAPTEEVVAAGLEAAKPFIKVLC 240
Query: 232 KLQKDVISNE 241
K Q D ++++
Sbjct: 241 KAQAD-LASK 249
>gi|329944611|ref|ZP_08292751.1| guanosine pentaphosphate synthetase I/polyribonucleotide
nucleotidyltransferase [Actinomyces sp. oral taxon 170
str. F0386]
gi|328530164|gb|EGF57047.1| guanosine pentaphosphate synthetase I/polyribonucleotide
nucleotidyltransferase [Actinomyces sp. oral taxon 170
str. F0386]
Length = 790
Score = 134 bits (336), Expect = 1e-29, Method: Composition-based stats.
Identities = 43/242 (17%), Positives = 83/242 (34%), Gaps = 14/242 (5%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
+R+ GR +R ++ V GS + + G+T +L TL E+ + H
Sbjct: 344 VRMDGRGLKDIRTLAAEVEVLPRVHGSAIFERGETQILGVTTLNMLRMEQQVDDLSPVTH 403
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P STG + A R+ G RAL V+ I
Sbjct: 404 KRYMHNYNFPPFSTGETGRVGAPKRREIGHGNL----AERALVPVLPTREDFPYAIRQVS 459
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+ + ++G T ++ + ++L + + + + + + G + D
Sbjct: 460 EALGSNGSTSMGSVCASTLSLLNAGVPLRAPVAGIAMGLMHE-----VIDGETKWATLTD 514
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED+ D+D T I +Q + + L A+D ++ +
Sbjct: 515 ILGSEDAFGDMDFKVAGTRDF-ITALQLDTKLDGLPSEVLAGALGQARDARLFILDVLAQ 573
Query: 237 VI 238
I
Sbjct: 574 AI 575
Score = 82.2 bits (201), Expect = 6e-14, Method: Composition-based stats.
Identities = 43/246 (17%), Positives = 73/246 (29%), Gaps = 39/246 (15%)
Query: 12 REISLTRR-VSKYAEGSCLVKF-GDTHLLTTATLE----EKVPMWIRNTKHGWITAEYGM 65
R + ++K A GS + G+T +L+ T+ ++ + G
Sbjct: 23 RVVRFETGRLAKQAAGSAMAYLDGETAVLSATTVGKHPKDQFDFFPLTVDVEERQYAAGR 82
Query: 66 LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125
+P S R GR G + R+I R LR Q++ I D
Sbjct: 83 IPGSFFRR------EGRAGTAAILACRLIDRPLRPSFVKGLRNEVQVVETVLAIHPDDDY 136
Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185
AI A ++ G VA ++ G+ + Y E
Sbjct: 137 DVLAINAASMSTQIAG-------------LPFSGPVAGTRLALIDGHWVAFPRYSEQQRA 183
Query: 186 DVDANFVM----TDSGHIVEVQGSAERATF----------SQDHFFAMLNLAKDRIADLI 231
+ I+ V+ A + ++ L AK I L
Sbjct: 184 TFQMVVAGRVLESGDVAIMMVEAGATEHAWELINAGSVAPTEAVVAEGLEAAKPHIKALC 243
Query: 232 KLQKDV 237
+ Q +V
Sbjct: 244 EAQLEV 249
>gi|326914729|ref|XP_003203675.1| PREDICTED: polyribonucleotide nucleotidyltransferase 1,
mitochondrial-like [Meleagris gallopavo]
Length = 864
Score = 134 bits (336), Expect = 1e-29, Method: Composition-based stats.
Identities = 45/247 (18%), Positives = 87/247 (35%), Gaps = 17/247 (6%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE--------EKVPMWIRN 53
R GR +R+I + K GS L + G T +L T T + + + +
Sbjct: 439 RCDGRDLTSLRDIKCEVNMFKMLHGSALFQRGQTQVLCTVTFDSIESSVKSDLISTAVSG 498
Query: 54 TKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQII 113
K Y P +T K V+ R+ G RAL+ V+ I
Sbjct: 499 IKDKNFMLHYEFPPYATNEIGKVTGVNRRELGHGAL----AERALKPVIPQDFPF--TIR 552
Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP 173
+ +V++++G + A+ G +AL D + + V K + +
Sbjct: 553 VTSEVLESNGSSSMASACGGSLALMDAGVPVSSAVAGVAVGLVTKYDLEG--RDLEDYRL 610
Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
+ D+ ED D+D T G + +Q + + A +++++
Sbjct: 611 LTDILGIEDYYGDMDFKMAGTSKG-VTALQVDLKLPGIPIKIIMEAIQQATAAKREILQI 669
Query: 234 QKDVISN 240
+ ++
Sbjct: 670 MNETLAK 676
Score = 71.4 bits (173), Expect = 1e-10, Method: Composition-based stats.
Identities = 37/218 (16%), Positives = 78/218 (35%), Gaps = 25/218 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTA---TLEEKVPMWIRNTKHGWITAEYGMLP 67
R++ L+ ++++A+G+ +V+ GDT ++ TA T + A G +P
Sbjct: 135 RKMELSSGKLARFADGAAVVQLGDTAVMVTAVSKTKPSASQFMPLVVDYRQKAAAAGRIP 194
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
+ R + R+I R++R + + QI+ + +
Sbjct: 195 TNYLRR------ELGTTDKEILTSRVIDRSIRPLFPVGYFYDTQILCNLLAVDGVNDPDV 248
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
AI GA A G V A+ G++ G +++ + S+ +
Sbjct: 249 LAINGASAA-------------LALSDIPWNGPVGAVRVGLVDGETVINPTRKQMSSSTL 295
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKD 225
+ +V ++ +AE Q F + +
Sbjct: 296 NLVVAAAPQNQVVMLEATAEN--ILQQDFCHAIKVGVK 331
>gi|110799658|ref|YP_696367.1| polynucleotide phosphorylase/polyadenylase [Clostridium perfringens
ATCC 13124]
gi|168211432|ref|ZP_02637057.1| polyribonucleotide nucleotidyltransferase [Clostridium perfringens
B str. ATCC 3626]
gi|123344675|sp|Q0TPS3|PNP_CLOP1 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|110674305|gb|ABG83292.1| polyribonucleotide nucleotidyltransferase [Clostridium perfringens
ATCC 13124]
gi|170710551|gb|EDT22733.1| polyribonucleotide nucleotidyltransferase [Clostridium perfringens
B str. ATCC 3626]
Length = 702
Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats.
Identities = 48/248 (19%), Positives = 88/248 (35%), Gaps = 19/248 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R GR +++R I + G+ L G T ++T ATL E ++ I +
Sbjct: 312 RPDGRAFDEVRNIGCEVGLLPRTHGTGLFTRGLTQVMTVATLGSISEIQILDGIGEEESK 371
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y S G R+ G RAL ++ A I + +
Sbjct: 372 RYMHHYNFPAYSVGEVRPLRGPGRREIGHGAL----AERALEPLIPSEAKFPYTIRLVSE 427
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
V+ ++G T A++ G+ +AL D ++ + + + + + D+
Sbjct: 428 VLSSNGSTSQASVCGSTLALLDAGVPIKRPAAGIAMGLITSKD-------LTEEEVLTDI 480
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T+ G I +Q + S+ + A+ ++ K+
Sbjct: 481 QGLEDFFGDMDFKVAGTEEG-ITSIQVDTKIKGLSEKVIHDAIYGARKARLMILDKIKEC 539
Query: 238 I---SNEV 242
I EV
Sbjct: 540 IPAPREEV 547
Score = 89.1 bits (219), Expect = 5e-16, Method: Composition-based stats.
Identities = 41/233 (17%), Positives = 78/233 (33%), Gaps = 27/233 (11%)
Query: 12 REISLTRRVSKY-AEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----HGWITAEYGML 66
R + + ++ + L+ +GDT +LT EK I + G +
Sbjct: 12 RPMKVEFGKLGMLSDAAILMSYGDTVILTNVNASEKPREGIDFFPLSVEYEERLYSVGKI 71
Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
P R G+ ++ R I R LR + Q++ ++ D
Sbjct: 72 PGGFIKR------EGKPSEKAILNGRAIDRPLRPLFPKGYRNDVQVVCTVVSVENDNLPE 125
Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
AI A +AL S VAA+ G++ I++ E
Sbjct: 126 ILAINAASMALC-------------LSSIPFTTPVAAVQVGLIGEEFILNPTSKEREESS 172
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
+ T ++ ++ + +D + D+ D+IK Q++ +S
Sbjct: 173 LQLTVCATKE-RVMMIEAGGDE--IPEDTMINAIKFGFDKCQDIIKFQEEAVS 222
>gi|315655673|ref|ZP_07908571.1| polyribonucleotide nucleotidyltransferase [Mobiluncus curtisii ATCC
51333]
gi|315489737|gb|EFU79364.1| polyribonucleotide nucleotidyltransferase [Mobiluncus curtisii ATCC
51333]
Length = 830
Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats.
Identities = 41/241 (17%), Positives = 78/241 (32%), Gaps = 14/241 (5%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +R +S V GS L + G+T +L TL E+ + H
Sbjct: 385 RIDGRGLKDIRSLSAEVEVLPRVHGSALFQRGETQVLGVTTLNMLRMEQQLDNLSPVTHK 444
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
+Y P TG + + R+ G AL V+ I +
Sbjct: 445 RYMHQYNFPPYCTGETGRVGSPKRREIGHGHL----AEMALEPVIPAREEFPYAIRQVSE 500
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
++ ++G + ++ + ++L + + + + + L
Sbjct: 501 IMGSNGSSSMGSVCASTLSLLNAGVPLRAPIAGIAMGLMSEPGENGTQFATLTDIL---- 556
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED+ D+D T I +Q + D L A+D ++ +
Sbjct: 557 -GAEDAFGDMDFKVAGTQDF-ITALQLDTKLDGIPADVLKGALGQARDARLKILDVMHAA 614
Query: 238 I 238
I
Sbjct: 615 I 615
Score = 80.7 bits (197), Expect = 2e-13, Method: Composition-based stats.
Identities = 38/236 (16%), Positives = 70/236 (29%), Gaps = 27/236 (11%)
Query: 12 REISLTRRV-SKYAEGSCLVKF-GDTHLLTTATLEEKVPMWIRNT----KHGWITAEYGM 65
R + + ++ A GS +V G+T + T+ ++ G
Sbjct: 59 RVLRFETGLLAQQAAGSAMVTLDGETVVFAATTVGKQPKDQFDFFPLTVDVEEKQYAAGR 118
Query: 66 LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125
+P S R GR G + R+I R LR Q++ I D
Sbjct: 119 IPGSFFRR------EGRPGTEAILAARLIDRPLRPAFVKGLRNEVQVVDTVLSIHPDHAY 172
Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185
AI + +A +L+ + VA + + + G
Sbjct: 173 DVVAINASSMATQLAGLPFSGPIGGTRLALIDGQWVAFPTYPEMEQSTFNMVIAGRVVNE 232
Query: 186 DVDANFVMTDSGHIVEVQGSAERATF----------SQDHFFAMLNLAKDRIADLI 231
+ I+ V+ + ++D + L+ AK I +L
Sbjct: 233 GTPE-----EDVAIMMVEAGGGEYAWDLIQEGKQAPTEDVVASALDAAKPFIKELC 283
>gi|297626619|ref|YP_003688382.1| polyribonucleotide nucleotidyltransferase (polynucleotide
phosphorylase) (PNPase) (Guanosine pentaphosphate
synthetase) [Propionibacterium freudenreichii subsp.
shermanii CIRM-BIA1]
gi|296922384|emb|CBL56956.1| Polyribonucleotide nucleotidyltransferase (Polynucleotide
phosphorylase) (PNPase) (Guanosine pentaphosphate
synthetase) [Propionibacterium freudenreichii subsp.
shermanii CIRM-BIA1]
Length = 736
Score = 133 bits (335), Expect = 2e-29, Method: Composition-based stats.
Identities = 46/242 (19%), Positives = 88/242 (36%), Gaps = 13/242 (5%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
+R+ GR +R +S V GS L + G+T +L TL E+ + +
Sbjct: 341 VRIDGRGPKDIRALSSEVGVVPRVHGSGLFQRGETQVLGITTLNMLDMEQKLDTLSSVHT 400
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
+Y M P STG + + R+ G RA+ V+ I
Sbjct: 401 KRYMHQYEMPPYSTGETGRVGSPKRREVGHGAL----ASRAIVPVLPTREEFPYAIRQVS 456
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+ I ++G T ++ + ++L + ++ + + + + G + D
Sbjct: 457 EAIGSNGSTSMGSVCASTLSLLNAGVPLKAPVAGIAMGLMSETDES----GKTSYLALTD 512
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED+ D+D T + +Q + D A L A+D ++ + D
Sbjct: 513 ILGAEDALGDMDFKVAGTSEF-VTALQLDTKLNGIPADVLAAALLQARDARHAILDVIHD 571
Query: 237 VI 238
I
Sbjct: 572 AI 573
Score = 75.7 bits (184), Expect = 5e-12, Method: Composition-based stats.
Identities = 38/249 (15%), Positives = 77/249 (30%), Gaps = 40/249 (16%)
Query: 14 ISLTRRV-SKYAEGSCLVKF-GDTHLLTTATLE----EKVPMWIRNTKHGWITAEYGMLP 67
+ + ++ A+G+ V GD+ LL+T T + E + + G +P
Sbjct: 23 MRFETGLLAQQADGAAAVYLDGDSMLLSTTTAQKKPREAIDFFPLTVDVEEKMYAVGRIP 82
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
S R GR + R+I R LR Q+++ +
Sbjct: 83 GSFFRR------EGRPSENAILTCRLIDRPLRPAFKKGLRNEVQVVVTVLALNPQVEYDM 136
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
A+ A ++ G + A+ ++ + ++
Sbjct: 137 VAMNAASMSTQ-------------ISGLPFSGPIGAVRISLIGDQWVCLPTVDQEKDATF 183
Query: 188 DANFVMT----DSGHIVEVQGSAERATF----------SQDHFFAMLNLAKDRIADLIKL 233
I+ V+ AT+ +++ A L+ AK I L
Sbjct: 184 SMVVAGRVLPDGDIAIMMVEAGGTEATWELVKGGRTAPTEEVVAAGLDAAKPFIKVLCDA 243
Query: 234 QKDVISNEV 242
Q + ++ +V
Sbjct: 244 QAE-LAAQV 251
>gi|242399326|ref|YP_002994750.1| Probable exosome complex exonuclease 1 [Thermococcus sibiricus MM
739]
gi|242265719|gb|ACS90401.1| Probable exosome complex exonuclease 1 [Thermococcus sibiricus MM
739]
Length = 246
Score = 133 bits (335), Expect = 2e-29, Method: Composition-based stats.
Identities = 63/242 (26%), Positives = 105/242 (43%), Gaps = 23/242 (9%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKV-PMWIRNTKHGWIT 60
R+ GR++ ++R+I + V K A+GS V++G ++ ++ P ++ +
Sbjct: 16 RVDGRKKYELRKIKMEVGVLKSADGSAYVEWGKNKIMAAVYGPREIHPKHLQKPDRAILR 75
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
Y M P S R K RS EI ++I AL V L I I +V+Q
Sbjct: 76 VRYNMAPFSVEERKKPG-----PDRRSVEISKVIRGALEPAVILELFPRTSIDIFIEVLQ 130
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
AD GTR A IT A +AL D M+D VAA + G + G ++DL+
Sbjct: 131 ADAGTRVAGITAASLALADAGIPMKDL-------------VAACAAGKIDGEIVLDLNKE 177
Query: 181 EDSTIDVDANF-VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
ED+ + D +M I +Q +++ F + LA + + Q++ +
Sbjct: 178 EDNYGEADVPVAIMPIKNDITLLQMDGY---LTKEEFLEAVKLAIKGAKAVYQKQREALR 234
Query: 240 NE 241
+
Sbjct: 235 EK 236
>gi|305663898|ref|YP_003860186.1| ribosomal RNA-processing protein RRP41/SKI6 [Ignisphaera aggregans
DSM 17230]
gi|304378467|gb|ADM28306.1| ribosomal RNA-processing protein RRP41/SKI6 [Ignisphaera aggregans
DSM 17230]
Length = 242
Score = 133 bits (335), Expect = 2e-29, Method: Composition-based stats.
Identities = 70/242 (28%), Positives = 102/242 (42%), Gaps = 22/242 (9%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEK-VPMWIRNTKHGWIT 60
R GR+ +R I + V K A+GS +V+ G T +L + VP I
Sbjct: 14 RHDGRRPEDLRPIRMEVGVLKNADGSAIVEIGKTVVLAAVYGPREVVPRHEEIVDRAVIR 73
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
Y ML ST K A S R+ ++I AL + S I I +VI
Sbjct: 74 CRYRMLSFSTLGERKSPAPSRREIEL----SKVIREALEPAIISSMYPRTAIDIFVEVIN 129
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
A+GGTRTA IT A +AL D + D VAA++ G + G ++DLD
Sbjct: 130 ANGGTRTAGITAASLALADAGIPLADL-------------VAAVAVGKIDGVIVLDLDEL 176
Query: 181 EDSTIDVDANF-VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
ED + D M I +Q + +++ F A L L I + +LQK+ +
Sbjct: 177 EDMYGEADMPIAAMPSLNRITMLQLNG---VLTKEEFKAALKLGLQGIKQIYELQKETLR 233
Query: 240 NE 241
+
Sbjct: 234 RK 235
>gi|168207524|ref|ZP_02633529.1| polyribonucleotide nucleotidyltransferase [Clostridium perfringens
E str. JGS1987]
gi|168216967|ref|ZP_02642592.1| polyribonucleotide nucleotidyltransferase [Clostridium perfringens
NCTC 8239]
gi|170661139|gb|EDT13822.1| polyribonucleotide nucleotidyltransferase [Clostridium perfringens
E str. JGS1987]
gi|182380890|gb|EDT78369.1| polyribonucleotide nucleotidyltransferase [Clostridium perfringens
NCTC 8239]
Length = 702
Score = 133 bits (335), Expect = 2e-29, Method: Composition-based stats.
Identities = 48/248 (19%), Positives = 88/248 (35%), Gaps = 19/248 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R GR +++R I + G+ L G T ++T ATL E ++ I +
Sbjct: 312 RPDGRAFDEVRNIGCEVGLLPRTHGTGLFTRGLTQVMTVATLGSISEIQILDGIGEEESK 371
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y S G R+ G RAL ++ A I + +
Sbjct: 372 RYMHHYNFPAYSVGEVRPLRGPGRREIGHGAL----AERALEPLIPSEAEFPYTIRLVSE 427
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
V+ ++G T A++ G+ +AL D ++ + + + + + D+
Sbjct: 428 VLSSNGSTSQASVCGSTLALLDAGVPIKRPAAGIAMGLITSKD-------LTEEEVLTDI 480
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T+ G I +Q + S+ + A+ ++ K+
Sbjct: 481 QGLEDFFGDMDFKVAGTEEG-ITSIQVDTKIKGLSEKVIHDAIYGARKARLMILDKIKEC 539
Query: 238 I---SNEV 242
I EV
Sbjct: 540 IPAPREEV 547
Score = 88.7 bits (218), Expect = 5e-16, Method: Composition-based stats.
Identities = 41/233 (17%), Positives = 78/233 (33%), Gaps = 27/233 (11%)
Query: 12 REISLTRRVSKY-AEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----HGWITAEYGML 66
R + + ++ + L+ +GDT +LT EK I + G +
Sbjct: 12 RPMKVEFGKLGMLSDAAILMSYGDTVILTNVNASEKPREGIDFFPLSVEYEERLYSVGKI 71
Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
P R G+ ++ R I R LR + Q++ ++ D
Sbjct: 72 PGGFIKR------EGKPSEKAILNGRAIDRPLRPLFPKGYRNDVQVVCTVVSVENDNLPE 125
Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
AI A +AL S VAA+ G++ I++ E
Sbjct: 126 ILAINAASMALC-------------LSSIPFTTPVAAVQVGLIGEEFILNPTSKEREESS 172
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
+ T ++ ++ + +D + D+ D+IK Q++ +S
Sbjct: 173 LQLTVCATKE-RVMMIEAGGDE--IPEDTMINAIKFGFDKCQDIIKFQEEAVS 222
>gi|304390809|ref|ZP_07372761.1| polyribonucleotide nucleotidyltransferase [Mobiluncus curtisii
subsp. curtisii ATCC 35241]
gi|304325692|gb|EFL92938.1| polyribonucleotide nucleotidyltransferase [Mobiluncus curtisii
subsp. curtisii ATCC 35241]
Length = 830
Score = 133 bits (335), Expect = 2e-29, Method: Composition-based stats.
Identities = 41/241 (17%), Positives = 78/241 (32%), Gaps = 14/241 (5%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +R +S V GS L + G+T +L TL E+ + H
Sbjct: 385 RIDGRGLKDIRSLSAEVEVLPRVHGSALFQRGETQVLGVTTLNMLRMEQQLDNLSPATHK 444
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
+Y P TG + + R+ G AL V+ I +
Sbjct: 445 RYMHQYNFPPYCTGETGRVGSPKRREIGHGHL----AEMALEPVIPAREEFPYAIRQVSE 500
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
++ ++G + ++ + ++L + + + + + L
Sbjct: 501 IMGSNGSSSMGSVCASTLSLLNAGVPLRAPIAGIAMGLMSEPGENGTQFATLTDIL---- 556
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED+ D+D T I +Q + D L A+D ++ +
Sbjct: 557 -GAEDAFGDMDFKVAGTQDF-ITALQLDTKLDGIPADVLKGALGQARDARLKILDVMHAA 614
Query: 238 I 238
I
Sbjct: 615 I 615
Score = 80.7 bits (197), Expect = 2e-13, Method: Composition-based stats.
Identities = 38/236 (16%), Positives = 70/236 (29%), Gaps = 27/236 (11%)
Query: 12 REISLTRRV-SKYAEGSCLVKF-GDTHLLTTATLEEKVPMWIRNT----KHGWITAEYGM 65
R + + ++ A GS +V G+T + T+ ++ G
Sbjct: 59 RVLRFETGLLAQQAAGSAMVTLDGETVVFAATTVGKQPKDQFDFFPLTVDVEEKQYAAGR 118
Query: 66 LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125
+P S R GR G + R+I R LR Q++ I D
Sbjct: 119 IPGSFFRR------EGRPGTEAILAARLIDRPLRPAFVKGLRNEVQVVDTVLSIHPDHAY 172
Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185
AI + +A +L+ + VA + + + G
Sbjct: 173 DVVAINASSMATQLAGLPFSGPIGGARLALIDGQWVAFPTYPEMEQSTFNMVIAGRVVNE 232
Query: 186 DVDANFVMTDSGHIVEVQGSAERATF----------SQDHFFAMLNLAKDRIADLI 231
+ I+ V+ + ++D + L+ AK I +L
Sbjct: 233 GTPE-----EDVAIMMVEAGGGEYAWDLIQEGKQAPTEDVVASALDAAKPFIKELC 283
>gi|298345251|ref|YP_003717938.1| polynucleotide phosphorylase/polyadenylase [Mobiluncus curtisii
ATCC 43063]
gi|315656413|ref|ZP_07909302.1| polyribonucleotide nucleotidyltransferase [Mobiluncus curtisii
subsp. holmesii ATCC 35242]
gi|298235312|gb|ADI66444.1| polynucleotide phosphorylase/polyadenylase [Mobiluncus curtisii
ATCC 43063]
gi|315492972|gb|EFU82574.1| polyribonucleotide nucleotidyltransferase [Mobiluncus curtisii
subsp. holmesii ATCC 35242]
Length = 830
Score = 133 bits (335), Expect = 2e-29, Method: Composition-based stats.
Identities = 41/241 (17%), Positives = 78/241 (32%), Gaps = 14/241 (5%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +R +S V GS L + G+T +L TL E+ + H
Sbjct: 385 RIDGRGLKDIRSLSAEVEVLPRVHGSALFQRGETQVLGVTTLNMLRMEQQLDNLSPVTHK 444
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
+Y P TG + + R+ G AL V+ I +
Sbjct: 445 RYMHQYNFPPYCTGETGRVGSPKRREIGHGHL----AEMALEPVIPAREEFPYAIRQVSE 500
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
++ ++G + ++ + ++L + + + + + L
Sbjct: 501 IMGSNGSSSMGSVCASTLSLLNAGVPLRAPIAGIAMGLMSEPGENGTQFATLTDIL---- 556
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED+ D+D T I +Q + D L A+D ++ +
Sbjct: 557 -GAEDAFGDMDFKVAGTQDF-ITALQLDTKLDGIPADVLKGALGQARDARLKILDVMHAA 614
Query: 238 I 238
I
Sbjct: 615 I 615
Score = 80.7 bits (197), Expect = 2e-13, Method: Composition-based stats.
Identities = 38/236 (16%), Positives = 70/236 (29%), Gaps = 27/236 (11%)
Query: 12 REISLTRRV-SKYAEGSCLVKF-GDTHLLTTATLEEKVPMWIRNT----KHGWITAEYGM 65
R + + ++ A GS +V G+T + T+ ++ G
Sbjct: 59 RVLRFETGLLAQQAAGSAMVTLDGETVVFAATTVGKQPKDQFDFFPLTVDVEEKQYAAGR 118
Query: 66 LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125
+P S R GR G + R+I R LR Q++ I D
Sbjct: 119 IPGSFFRR------EGRPGTEAILAARLIDRPLRPAFVKGLRNEVQVVDTVLSIHPDHAY 172
Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185
AI + +A +L+ + VA + + + G
Sbjct: 173 DVVAINASSMATQLAGLPFSGPIGGTRLALIDGQWVAFPTYPEMEQSTFNMVIAGRVVNE 232
Query: 186 DVDANFVMTDSGHIVEVQGSAERATF----------SQDHFFAMLNLAKDRIADLI 231
+ I+ V+ + ++D + L+ AK I +L
Sbjct: 233 GTPE-----EDVAIMMVEAGGGEYAWDLIQEGKQAPTEDVVASALDAAKPFIKELC 283
>gi|332670053|ref|YP_004453061.1| guanosine pentaphosphate synthetase I/polyribonucleotide
nucleotidyltransferase [Cellulomonas fimi ATCC 484]
gi|332339091|gb|AEE45674.1| guanosine pentaphosphate synthetase I/polyribonucleotide
nucleotidyltransferase [Cellulomonas fimi ATCC 484]
Length = 742
Score = 133 bits (335), Expect = 2e-29, Method: Composition-based stats.
Identities = 42/242 (17%), Positives = 79/242 (32%), Gaps = 14/242 (5%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
R+ GR +R +S V GS + + G+T +L TL E+ +
Sbjct: 338 FRIDGRGLRDIRTLSAEVEVLPRVHGSAIFERGETQILGVTTLNMLRMEQQLDTLSPETR 397
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P STG + + R+ G RAL V+ I
Sbjct: 398 KRYMHNYNFPPYSTGETGRVGSPKRREIGHGAL----AERALMPVLPSREEFPYAIRQVS 453
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+ + ++G T ++ + ++L + + + V G + D
Sbjct: 454 EALGSNGSTSMGSVCASTLSLLNAGVPLRAPVAGIAMGLVSD-----TVDGETRYAALTD 508
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED+ D+D T + +Q + L AK+ ++ + +
Sbjct: 509 ILGAEDAFGDMDFKVAGTREF-VTAIQLDTKLDGIPASVLGGALTQAKEARLAILDVIAE 567
Query: 237 VI 238
I
Sbjct: 568 AI 569
Score = 62.6 bits (150), Expect = 5e-08, Method: Composition-based stats.
Identities = 38/221 (17%), Positives = 67/221 (30%), Gaps = 36/221 (16%)
Query: 33 GDTHLLTTATLE----EKVPMWIRNTKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQ 88
G+T LL+ T ++ + G +P S R GR +
Sbjct: 44 GETMLLSATTAGKHPKDQFDFFPLTIDVEERQYAAGKIPGSFFRR------EGRPSTEAI 97
Query: 89 EIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCS 148
R++ R LR + Q++I I D T AI A ++
Sbjct: 98 LACRLVDRPLRPLFVKGLRNEVQVVITVLAIHPDDAYDTLAINAASISTQ---------- 147
Query: 149 NKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVM---TDSGHIVEVQGS 205
G V + ++ G + Y E D D I ++
Sbjct: 148 ---LSGLPFSGPVGGVRIALVDGQWVAFPRYSERERATFDMVVAGRVVGDDVAIAMIEAE 204
Query: 206 AERATF----------SQDHFFAMLNLAKDRIADLIKLQKD 236
A ++ +++ L AK I L++ Q++
Sbjct: 205 APEKSWNLIQEGATAPTEEVVAQGLEAAKPFIKVLVEAQQE 245
>gi|296243060|ref|YP_003650547.1| ribosomal RNA-processing protein RRP41/SKI6 [Thermosphaera
aggregans DSM 11486]
gi|296095644|gb|ADG91595.1| ribosomal RNA-processing protein RRP41/SKI6 [Thermosphaera
aggregans DSM 11486]
Length = 249
Score = 133 bits (335), Expect = 2e-29, Method: Composition-based stats.
Identities = 67/239 (28%), Positives = 104/239 (43%), Gaps = 23/239 (9%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKV-PMWIRNTKHGWIT 60
RL GR+ +++R + + V K A GS LV++G T +L + P I +
Sbjct: 20 RLDGRRLDELRPVKIKVGVLKNANGSALVEYGGTKVLAAVFGPREALPRHIALPDRATLR 79
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
Y M P ST R S R E+ ++I AL SVV I I +V+Q
Sbjct: 80 VRYHMAPFSTSERK-----SPAPSRREIELSKVIREALESVVFSEQFPRTSIDIFIEVLQ 134
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTA +T A VAL D M+D ++ G + G ++D+
Sbjct: 135 ADGGTRTAGLTAASVALADAGIPMKDLVIG-------------VAVGKIEGNLVLDISEL 181
Query: 181 EDSTIDVDANFVMTDS-GHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
ED + D + + G IV +Q + + + A + LA + + K+ K+ +
Sbjct: 182 EDEYGEADLPLGIAPNIGEIVLLQLNG---VLTPEELKAGIELAWKGVDSIYKIAKEAL 237
>gi|110803188|ref|YP_698967.1| polynucleotide phosphorylase/polyadenylase [Clostridium perfringens
SM101]
gi|123146059|sp|Q0SSE0|PNP_CLOPS RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|110683689|gb|ABG87059.1| polyribonucleotide nucleotidyltransferase [Clostridium perfringens
SM101]
Length = 702
Score = 133 bits (335), Expect = 2e-29, Method: Composition-based stats.
Identities = 48/248 (19%), Positives = 88/248 (35%), Gaps = 19/248 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R GR +++R I + G+ L G T ++T ATL E ++ I +
Sbjct: 312 RPDGRAFDEVRNIGCEVGLLPRTHGTGLFTRGLTQVMTVATLGAISEIQILDGIGEEESK 371
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y S G R+ G RAL ++ A I + +
Sbjct: 372 RYMHHYNFPAYSVGEVRPLRGPGRREIGHGAL----AERALEPLIPSEAEFPYTIRLVSE 427
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
V+ ++G T A++ G+ +AL D ++ + + + + + D+
Sbjct: 428 VLSSNGSTSQASVCGSTLALLDAGVPIKRPAAGIAMGLITSKD-------LTEEEVLTDI 480
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T+ G I +Q + S+ + A+ ++ K+
Sbjct: 481 QGLEDFFGDMDFKVAGTEEG-ITSIQVDTKIKGLSEKVIHDAIYGARKARLMILDKIKEC 539
Query: 238 I---SNEV 242
I EV
Sbjct: 540 IPAPREEV 547
Score = 88.7 bits (218), Expect = 6e-16, Method: Composition-based stats.
Identities = 41/233 (17%), Positives = 78/233 (33%), Gaps = 27/233 (11%)
Query: 12 REISLTRRVSKY-AEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----HGWITAEYGML 66
R + + ++ + L+ +GDT +LT EK I + G +
Sbjct: 12 RPMKVEFGKLGMLSDAAILMSYGDTVILTNVNASEKPREGIDFFPLSVEYEERLYSVGKI 71
Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
P R G+ ++ R I R LR + Q++ ++ D
Sbjct: 72 PGGFIKR------EGKPSEKAILNGRAIDRPLRPLFPKGYRNDVQVVCTVVSVENDNLPE 125
Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
AI A +AL S VAA+ G++ I++ E
Sbjct: 126 ILAINAASMALC-------------LSSIPFTTPVAAVQVGLIGEEFILNPTSKEREESS 172
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
+ T ++ ++ + +D + D+ D+IK Q++ +S
Sbjct: 173 LQLTVCATKE-RVMMIEAGGDE--IPEDTMINAIKFGFDKCQDIIKFQEEAVS 222
>gi|89052697|ref|YP_508148.1| ribonuclease PH [Jannaschia sp. CCS1]
gi|88862246|gb|ABD53123.1| RNAse PH [Jannaschia sp. CCS1]
Length = 209
Score = 133 bits (335), Expect = 2e-29, Method: Composition-based stats.
Identities = 109/209 (52%), Positives = 153/209 (73%), Gaps = 2/209 (0%)
Query: 29 LVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQ 88
+++ GDTH+L TATLE +VP +++N+ GW+TAEYGMLPR+T R++REA +G+Q GR+Q
Sbjct: 1 MIRCGDTHVLCTATLEARVPPFLKNSGLGWVTAEYGMLPRATHTRMRREAAAGKQSGRTQ 60
Query: 89 EIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCS 148
EIQR+IGR+LR+ +D SALG RQI +DCDVIQADGGTR A+ITG WVAL + +
Sbjct: 61 EIQRLIGRSLRAGIDRSALGERQITVDCDVIQADGGTRCASITGGWVALRLAVNKLLKS- 119
Query: 149 NKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAER 208
++ + H+AA+SCG+ G P++DLDY EDS D NF+MT +G +VE+Q SAE
Sbjct: 120 -GEIVTDPIVDHIAAVSCGIYAGQPVLDLDYPEDSEAGTDGNFIMTGAGQVVELQASAEG 178
Query: 209 ATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ATFS+D F + +LA+ +A+L++ Q
Sbjct: 179 ATFSRDEFNELYSLAEKGVAELVQAQAAA 207
>gi|302558058|ref|ZP_07310400.1| polyribonucleotide nucleotidyltransferase [Streptomyces
griseoflavus Tu4000]
gi|302475676|gb|EFL38769.1| polyribonucleotide nucleotidyltransferase [Streptomyces
griseoflavus Tu4000]
Length = 747
Score = 133 bits (335), Expect = 2e-29, Method: Composition-based stats.
Identities = 39/241 (16%), Positives = 80/241 (33%), Gaps = 14/241 (5%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +R ++ GS L + G+T +L TL E+ +
Sbjct: 339 RIDGRGVTDIRTLAAEVEAIPRVHGSALFERGETQILGVTTLNMLRMEQQLDTLSPVTRK 398
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + + R+ G RA+ V+ I +
Sbjct: 399 RYMHNYNFPPYSVGETGRVGSPKRREIGHGAL----AERAIVPVLPTREEFPYAIRQVSE 454
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ ++G T ++ + ++L + ++ + + + G + D+
Sbjct: 455 ALGSNGSTSMGSVCASTMSLLNAGVPLKAPVAGIAMGLISQEI-----NGETHYVALTDI 509
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED+ D+D T + +Q + A L A+D ++ + +
Sbjct: 510 LGAEDAFGDMDFKVAGTKEF-VTALQLDTKLDGIPASVLAAALKQARDARLHILDVMMEA 568
Query: 238 I 238
I
Sbjct: 569 I 569
Score = 76.4 bits (186), Expect = 3e-12, Method: Composition-based stats.
Identities = 38/240 (15%), Positives = 65/240 (27%), Gaps = 39/240 (16%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGD-THLLTTATLEEKVPMWIRNT----KHGWITAEYGM 65
R I +++ A GS + D T +L+ + + + G
Sbjct: 20 RTIRFETGRLARQAAGSAVAYLDDDTMVLSATSASKNPKDQLDFFPLTVDVEERMYAAGK 79
Query: 66 LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125
+P S R GR + R+I R LR Q++ + D
Sbjct: 80 IPGSFFRR------EGRPSEDAILTCRLIDRPLRPSFKKGLRNEIQVVATIMALNPDHLY 133
Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185
AI A + G + + ++ G + + E
Sbjct: 134 DVVAINAASASTQLAG-------------LPFSGPIGGVRVALINGQWVAFPTHTELEDA 180
Query: 186 DVDANFVMT----DSGHIVEVQGSAERATF----------SQDHFFAMLNLAKDRIADLI 231
D I+ V+ A T +++ A L AK I L
Sbjct: 181 VFDMVVAGRVLEDGDVAIMMVEAEATEKTVKLVEGGAEAPTEEVVAAGLEAAKPFIKVLC 240
>gi|32141272|ref|NP_733673.1| polynucleotide phosphorylase/polyadenylase [Streptomyces coelicolor
A3(2)]
gi|256784838|ref|ZP_05523269.1| polynucleotide phosphorylase/polyadenylase [Streptomyces lividans
TK24]
gi|289768731|ref|ZP_06528109.1| polyribonucleotide nucleotidyltransferase [Streptomyces lividans
TK24]
gi|81445833|sp|Q8CJQ6|PNP_STRCO RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|24413893|emb|CAD55364.1| guanosine pentaphosphate synthetase/polyribonucleotide
nucleotidyltransferase [Streptomyces coelicolor A3(2)]
gi|289698930|gb|EFD66359.1| polyribonucleotide nucleotidyltransferase [Streptomyces lividans
TK24]
Length = 739
Score = 133 bits (335), Expect = 2e-29, Method: Composition-based stats.
Identities = 39/241 (16%), Positives = 80/241 (33%), Gaps = 14/241 (5%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +R ++ GS L + G+T +L TL E+ +
Sbjct: 339 RIDGRGVTDIRTLAAEVEAIPRVHGSALFERGETQILGVTTLNMLRMEQQLDTLSPVTRK 398
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + + R+ G RA+ V+ I +
Sbjct: 399 RYMHNYNFPPYSVGETGRVGSPKRREIGHGAL----AERAIVPVLPTREEFPYAIRQVSE 454
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ ++G T ++ + ++L + ++ + + + G + D+
Sbjct: 455 ALGSNGSTSMGSVCASTMSLLNAGVPLKAPVAGIAMGLISQEI-----NGETHYVALTDI 509
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED+ D+D T + +Q + A L A+D ++ + +
Sbjct: 510 LGAEDAFGDMDFKVAGTKEF-VTALQLDTKLDGIPASVLAAALKQARDARLHILDVMMEA 568
Query: 238 I 238
I
Sbjct: 569 I 569
Score = 77.2 bits (188), Expect = 2e-12, Method: Composition-based stats.
Identities = 41/230 (17%), Positives = 70/230 (30%), Gaps = 19/230 (8%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGD-THLLTTATLEEKVPMWIRNT----KHGWITAEYGM 65
R I +++ A GS + D T +L+ + + + G
Sbjct: 20 RTIRFETGRLARQAAGSAVAYLDDDTMVLSATSASKNPKDQLDFFPLTVDVEERMYAAGK 79
Query: 66 LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125
+P S R GR + R+I R LR Q++ + D
Sbjct: 80 IPGSFFRR------EGRPSEDAILTCRLIDRPLRPSFKKGLRNEIQVVATIMALNPDHLY 133
Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185
AI A + +++ + VA + L +
Sbjct: 134 DVVAINAASASTQLAGLPFSGPIGGVRVALIRGQWVAFPTHTELEDAVFDMVV-AGRVLE 192
Query: 186 DVDANFVMTD----SGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231
D D +M + I V+G AE +++ A L+ AK I L
Sbjct: 193 DGDVAIMMVEAEATDKTIKLVEGGAEAP--TEEVVAAGLDAAKPFIKVLC 240
>gi|301756464|ref|XP_002914081.1| PREDICTED: polyribonucleotide nucleotidyltransferase 1,
mitochondrial-like [Ailuropoda melanoleuca]
Length = 784
Score = 133 bits (335), Expect = 2e-29, Method: Composition-based stats.
Identities = 48/247 (19%), Positives = 86/247 (34%), Gaps = 17/247 (6%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE--------EKVPMWIRN 53
R GR +R I+ + K GS L + G T +L T T + +++ I
Sbjct: 358 RCDGRDLTSLRNINCEVDMFKTLHGSALFQRGQTQVLCTVTFDSLESSMKSDQIITAING 417
Query: 54 TKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQII 113
K Y P +T K V+ R+ G +AL V+ +
Sbjct: 418 IKDKNFMLHYEFPPYATNEIGKVTGVNRRELGHGAL----AEKALYPVIPKDFPF--TVR 471
Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP 173
+ +V++++G + A+ G +AL D + + V K + +
Sbjct: 472 VTSEVLESNGSSSMASACGGSLALMDAGVPISSAVAGVAVGLVTKNNPD--KGEIEDYRL 529
Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
+ D+ ED D+D T G I +Q + + A ++I++
Sbjct: 530 LTDILGIEDYNGDMDFKIAGTTKG-ITALQADIKLPGIPIKIVMEAIQQASVAKKEIIQI 588
Query: 234 QKDVISN 240
IS
Sbjct: 589 MNKTISK 595
Score = 74.5 bits (181), Expect = 1e-11, Method: Composition-based stats.
Identities = 41/218 (18%), Positives = 78/218 (35%), Gaps = 25/218 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTA---TLEEKVPMWIRNTKHGWITAEYGMLP 67
R++ ++ ++++A+GS +V+ GDT ++ TA T + A G +P
Sbjct: 54 RKLEISSGKLARFADGSAVVQSGDTAVMVTAVSKTKPSPSQFMPLVVDYRQKAAAAGRIP 113
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
+ R + R+I R++R + Q++ + +
Sbjct: 114 TNYLRREIGS------SDKEILTSRVIDRSIRPLFPAGYFYDTQVLCNLLAVDGVNEPDV 167
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
AI GA VA G + A+ GM+ G +V+ E S+ +
Sbjct: 168 LAINGASVA-------------LSLSDIPWNGPIGAVRIGMIDGECVVNPTRKEMSSSTL 214
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKD 225
+ IV ++ SAE Q F + +
Sbjct: 215 NLVVAGAPKSQIVMMEASAEN--ILQQDFCHAIKVGVK 250
>gi|289705304|ref|ZP_06501702.1| guanosine pentaphosphate synthetase I/polyribonucleotide
nucleotidyltransferase [Micrococcus luteus SK58]
gi|289557967|gb|EFD51260.1| guanosine pentaphosphate synthetase I/polyribonucleotide
nucleotidyltransferase [Micrococcus luteus SK58]
Length = 753
Score = 133 bits (335), Expect = 2e-29, Method: Composition-based stats.
Identities = 41/242 (16%), Positives = 83/242 (34%), Gaps = 14/242 (5%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
+R+ GR +R+++ V GS + + G+T ++ TL E+ +
Sbjct: 347 VRIDGRGLTDIRKLTAEVEVLPRVHGSAIFERGETQIMGVTTLNMLKMEQQIDSLAPETA 406
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P STG + + R+ G RAL V+ I
Sbjct: 407 KRYMHHYNFPPYSTGETGRVGSPKRREIGHGAL----AERALVPVLPAREEFPYAIRQVS 462
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+ + ++G T ++ + ++L + + + V +A G + D
Sbjct: 463 EALGSNGSTSMGSVCASTLSLLNAGVPLRAPVAGIAMGLV-----SAEVDGQTQYAALTD 517
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED+ D+D T + +Q + A L A++ ++ +
Sbjct: 518 ILGAEDAFGDMDFKVAGTAEF-VTAIQLDTKLDGIPASVLAAALTQAREARLHILSVLNA 576
Query: 237 VI 238
I
Sbjct: 577 AI 578
Score = 71.8 bits (174), Expect = 9e-11, Method: Composition-based stats.
Identities = 38/249 (15%), Positives = 75/249 (30%), Gaps = 34/249 (13%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGD-THLLTTATLE----EKVPMWIRNTKHGWITAEYGM 65
R + +++ A G+ +V + T +L+ T+ E + G
Sbjct: 21 RTVRFETGRLAQQAAGAAMVYIDEETSMLSATTVGKSPREGFDFFPLTVDVEERMYAAGR 80
Query: 66 LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125
+P S R GR + R+I R LR Q+++ I D
Sbjct: 81 IPGSFFRR------EGRPSTDAILTCRLIDRPLRPAFVKGIRNEVQVVVTVTSIAPDEIY 134
Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185
T AI A ++ +++ + G + + +
Sbjct: 135 DTVAINAASLSTQLSGLPFSGPIGGVRMALMDD--------GSGTRQWVAFPKHSQLEGA 186
Query: 186 DVDANFVM---TDSGHIVEVQGSAERATFS-----------QDHFFAMLNLAKDRIADLI 231
+ D I+ V+ A +++ ++ L AK I L
Sbjct: 187 VFNMAVAGRVVGDDVAIMMVEAEATPDSWTLVKERGAQAPTEEIVAEGLEAAKPFIRALC 246
Query: 232 KLQKDVISN 240
+ Q D++
Sbjct: 247 EAQADLVKR 255
>gi|300087646|ref|YP_003758168.1| polyribonucleotide nucleotidyltransferase [Dehalogenimonas
lykanthroporepellens BL-DC-9]
gi|299527379|gb|ADJ25847.1| polyribonucleotide nucleotidyltransferase [Dehalogenimonas
lykanthroporepellens BL-DC-9]
Length = 733
Score = 133 bits (335), Expect = 2e-29, Method: Composition-based stats.
Identities = 47/243 (19%), Positives = 83/243 (34%), Gaps = 16/243 (6%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKHG 57
R+SGR ++RE+S V GS L G T +L TL E+ I
Sbjct: 313 RVSGRGIEEIRELSAEVGVLPRVHGSALFSRGQTQILNVVTLGSLQMEQKLDNISPETSK 372
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + R+ G RAL VV A + + +
Sbjct: 373 RYIHHYNFPPYSVGETKRIGTGR-REIGHGAL----AERALLPVVPSEAEFPYALRLVSE 427
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ ++G T A+ + ++L D ++ + + + D+
Sbjct: 428 AVSSNGSTSMASACASSLSLMDAGVPIKKPVAGISIGLITDDT------NPDRFVTLTDI 481
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
+ ED+ D+D T G I +Q + + L A+ ++++
Sbjct: 482 EGLEDNYGDMDFKVAGTRDG-ITAIQLDMKLKGITFAVIEQTLAQARRAREVILEVMNKA 540
Query: 238 ISN 240
I+
Sbjct: 541 IAQ 543
Score = 105 bits (261), Expect = 7e-21, Method: Composition-based stats.
Identities = 40/233 (17%), Positives = 82/233 (35%), Gaps = 27/233 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRN----TKHGWITAEYGML 66
R + + ++ A G+ V++GDT +L TA + ++ + G +
Sbjct: 14 RNLVIENGRMAGQANGAVTVRYGDTVVLVTAVIAKEPRPGVDFLPLTIDVEERMYAAGRI 73
Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
P R GR ++ R+ R LR ++ S QII+ +
Sbjct: 74 PGGFIRR------EGRPSEQATLAARLADRPLRPLLPKSWRREIQIIVTVLTADQENDPD 127
Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
+ GA A G ++A+ G + G +++ + +
Sbjct: 128 VLGVIGASCA-------------LGISEMPFDGPLSAVRVGHIDGEFVINPTHSQLENST 174
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
+D T S + ++ A A +D F + ++I +Q ++I+
Sbjct: 175 LDVVVASTRS-AVTMLEAGANEAP--EDLMFEAIRFGHQANQEIIAIQDEIIA 224
>gi|329936628|ref|ZP_08286335.1| guanosine pentaphosphate synthetase/polyribonucleotide
nucleotidyltransferase [Streptomyces griseoaurantiacus
M045]
gi|329303858|gb|EGG47741.1| guanosine pentaphosphate synthetase/polyribonucleotide
nucleotidyltransferase [Streptomyces griseoaurantiacus
M045]
Length = 740
Score = 133 bits (334), Expect = 2e-29, Method: Composition-based stats.
Identities = 40/241 (16%), Positives = 80/241 (33%), Gaps = 14/241 (5%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +R ++ GS L + G+T +L TL E+ +
Sbjct: 339 RIDGRGVTDIRTLAAEVEAIPRVHGSALFERGETQILGVTTLNMLRMEQQLDTLSPVTRK 398
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + + R+ G RAL V+ I +
Sbjct: 399 RYMHNYNFPPFSVGETGRVGSPKRREIGHGAL----AERALVPVLPAREEFPYAIRQVSE 454
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ ++G T ++ + ++L + ++ + + + G + D+
Sbjct: 455 ALGSNGSTSMGSVCASTMSLLNAGVPLKAPVAGIAMGLISQEIE-----GETHYVTLTDI 509
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED+ D+D T + +Q + A L A+D ++ + +
Sbjct: 510 LGAEDAFGDMDFKVAGTKEF-VTALQLDTKLNGIPASVLAAALKQARDARLHILDVMMEA 568
Query: 238 I 238
I
Sbjct: 569 I 569
Score = 82.2 bits (201), Expect = 5e-14, Method: Composition-based stats.
Identities = 42/243 (17%), Positives = 66/243 (27%), Gaps = 39/243 (16%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGD-THLLTTATLEEKVPMWIRNT----KHGWITAEYGM 65
R I ++K A GS + D T +L+ T + + G
Sbjct: 20 RTIRFETGRLAKQAAGSAVAYLDDDTMVLSATTASKNPKDQLDFFPLTVDVEERMYAAGK 79
Query: 66 LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125
+P S R GR + R+I R LR Q++ + D
Sbjct: 80 IPGSFFRR------EGRPSEDAILTCRLIDRPLRPSFAKGLRNEIQVVETIMALNPDHLY 133
Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185
AI A + G + ++ G + + E
Sbjct: 134 DVVAINAASASTQLAG-------------LPFSGPIGGTRVALINGQWVAFPTHTELEDA 180
Query: 186 DVDANFVMT----DSGHIVEVQGSAERATF----------SQDHFFAMLNLAKDRIADLI 231
D I+ V+ A T +++ A L AK I L
Sbjct: 181 VFDMVVAGRVLEDGDVAIMMVEAEATEKTIQLIKGGAEAPTEEVVAAGLEAAKPFIKVLC 240
Query: 232 KLQ 234
K Q
Sbjct: 241 KAQ 243
>gi|326771722|ref|ZP_08231007.1| polyribonucleotide nucleotidyltransferase [Actinomyces viscosus
C505]
gi|326637855|gb|EGE38756.1| polyribonucleotide nucleotidyltransferase [Actinomyces viscosus
C505]
Length = 785
Score = 133 bits (334), Expect = 2e-29, Method: Composition-based stats.
Identities = 43/242 (17%), Positives = 83/242 (34%), Gaps = 14/242 (5%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
+R+ GR +R ++ V GS + + G+T +L TL E+ + H
Sbjct: 344 VRMDGRGLKDIRTLAAEVEVLPRVHGSAIFERGETQILGVTTLNMLRMEQQVDDLSPVTH 403
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P STG + A R+ G RAL V+ I
Sbjct: 404 KRYMHNYNFPPFSTGETGRVGAPKRREIGHGNL----AERALVPVLPTREDFPYAIRQVS 459
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+ + ++G T ++ + ++L + + + + + + G + D
Sbjct: 460 EALGSNGSTSMGSVCASTLSLLNAGVPLRAPVAGIAMGLMHE-----VIDGETKWATLTD 514
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED+ D+D T I +Q + + L A+D ++ +
Sbjct: 515 ILGSEDAFGDMDFKVAGTRDF-ITALQLDTKLDGLPSEVLAGALGQARDARLFILDVLAQ 573
Query: 237 VI 238
I
Sbjct: 574 AI 575
Score = 81.8 bits (200), Expect = 8e-14, Method: Composition-based stats.
Identities = 43/246 (17%), Positives = 73/246 (29%), Gaps = 39/246 (15%)
Query: 12 REISLTRR-VSKYAEGSCLVKF-GDTHLLTTATLE----EKVPMWIRNTKHGWITAEYGM 65
R + ++K A GS + G+T +L+ T+ ++ + G
Sbjct: 23 RVVRFETGRLAKQAAGSAMAYLDGETAVLSATTVGKHPKDQFDFFPLTVDVEERQYAAGR 82
Query: 66 LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125
+P S R GR G + R+I R LR Q++ I D
Sbjct: 83 IPGSFFRR------EGRAGTAAILACRLIDRPLRPSFVKGLRNEVQVVETVLAIHPDDDY 136
Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185
AI A ++ G VA ++ G+ + Y E
Sbjct: 137 DVLAINAASMSTQIAG-------------LPFSGPVAGTRLALIDGHWVAFPRYSEQQRA 183
Query: 186 DVDANFVM----TDSGHIVEVQGSAERATF----------SQDHFFAMLNLAKDRIADLI 231
+ I+ V+ A + ++ L AK I L
Sbjct: 184 TFQMVVAGRVLESGDVAIMMVEAGATEHAWELINAGAVAPTEAVVAEGLEAAKPHIKALC 243
Query: 232 KLQKDV 237
+ Q +V
Sbjct: 244 EAQLEV 249
>gi|168187902|ref|ZP_02622537.1| polyribonucleotide nucleotidyltransferase [Clostridium botulinum C
str. Eklund]
gi|169294241|gb|EDS76374.1| polyribonucleotide nucleotidyltransferase [Clostridium botulinum C
str. Eklund]
Length = 705
Score = 133 bits (334), Expect = 2e-29, Method: Composition-based stats.
Identities = 47/248 (18%), Positives = 89/248 (35%), Gaps = 19/248 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R GR +++R +S + GS L G T +++ ATL E +V I
Sbjct: 312 RPDGRSFDEIRPLSSEVSLLPRTHGSGLFTRGLTQVMSVATLGSVSEGQVLDGIEEETLK 371
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y S G + R+ G +A+ ++ I + +
Sbjct: 372 RYMHHYNFPSYSVGEVRPLRGPNRREIGHGAL----AEKAIEPLIPSEQEFPYAIRVVSE 427
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
V+ ++G T A++ G+ +AL D ++ + + V + + D+
Sbjct: 428 VLSSNGSTSQASVCGSTLALLDAGVPLKRPAAGIAMGLVTSED-------LEKEEILTDI 480
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T+ G I +Q + S D + A+ ++++ +
Sbjct: 481 QGLEDFFGDMDFKVAGTEKG-ITAIQVDTKIKGLSNDCIKKAITNARKARLTILEVINNC 539
Query: 238 I---SNEV 242
I EV
Sbjct: 540 IDKPREEV 547
Score = 84.9 bits (208), Expect = 1e-14, Method: Composition-based stats.
Identities = 35/234 (14%), Positives = 72/234 (30%), Gaps = 27/234 (11%)
Query: 12 REISLTRRVSKYAEGSCL-VKFGDTHLLTTATLE----EKVPMWIRNTKHGWITAEYGML 66
R + L + +GDT +L E + + + ++ G +
Sbjct: 12 RTLKGEFGKLGMLSDCALNISYGDTVVLVNVNASPEPKEGIDFFPLSIEYQERLYAVGKI 71
Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
P R GR ++ R I R LR + Q++ + D
Sbjct: 72 PGGFIKR------EGRPSDKAILNARAIDRPLRPLFPKGYRNDVQVVCTVVSVDQDNLPN 125
Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
A+ GA +AL S V +S G++ G +++ +
Sbjct: 126 ILAMNGASLALC-------------LSSIPFTTPVGTVSVGLVDGEFVINPTSKQREESI 172
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
+D T ++ ++ E +D + + + + Q+ V+
Sbjct: 173 LDLTVCATKD-RVMMIEAGGEE--IPEDVMYDAIMFGFEECKKIANFQQKVMEQ 223
>gi|332157779|ref|YP_004423058.1| exosome complex exonuclease Rrp41 [Pyrococcus sp. NA2]
gi|331033242|gb|AEC51054.1| exosome complex exonuclease Rrp41 [Pyrococcus sp. NA2]
Length = 249
Score = 133 bits (334), Expect = 2e-29, Method: Composition-based stats.
Identities = 60/242 (24%), Positives = 104/242 (42%), Gaps = 23/242 (9%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEK-VPMWIRNTKHGWIT 60
R+ GR++ ++R I + V K A+GS +++G ++ ++ P ++ +
Sbjct: 17 RIDGRKKYELRPIKMEVGVLKNADGSAYIEWGKNKIIAAVYGPKELHPKHLQRPDRAILR 76
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
Y M P S R K RS EI ++I AL + L I + +V+Q
Sbjct: 77 VRYNMAPFSVEERKKPG-----PDRRSIEISKVIKGALEPALILEMFPRTAIDVFIEVLQ 131
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
AD GTR A IT A +AL D M D VAA + G + G ++DL+
Sbjct: 132 ADAGTRVAGITAASLALADAGIPMRDL-------------VAACAAGKIEGEIVLDLNKE 178
Query: 181 EDSTIDVDANF-VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
ED+ + D +M I +Q +++ F + LA + + Q++ +
Sbjct: 179 EDNYGEADVPVAIMPLRNDITLLQMDGY---LTKEEFIEAVKLAIKGAKAVYQKQREALK 235
Query: 240 NE 241
++
Sbjct: 236 DK 237
>gi|145344077|ref|XP_001416565.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144576791|gb|ABO94858.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 823
Score = 133 bits (334), Expect = 2e-29, Method: Composition-based stats.
Identities = 40/236 (16%), Positives = 79/236 (33%), Gaps = 2/236 (0%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R GR + +R I+ + GS L G+T + ATL ++
Sbjct: 378 RQDGRTTSMIRPIACEAGILPRTHGSSLFTRGETQAIGVATLGGSQDAQRQDDVEAGEDK 437
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
+ + + V +G R + RAL ++ ++ + ++
Sbjct: 438 RFMLHYFFPPSSVGETGRTGGASRREIGHGNLAERALMPILPSEEDFPFVCKLESTITES 497
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
+G + A + +AL D ++ + +L G AA L + D+ E
Sbjct: 498 NGSSSMATVCAGTLALLDAGVPIKRKVAGIAMGLIL-GSEAAGGGDELEPIVLTDILGSE 556
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
D+ D+D G I Q + + D L A+ + ++ +
Sbjct: 557 DALGDMDFKVAGDKDG-ITAFQMDIKVEGITIDVMKTALEEAQKGLVHILGEMEKC 611
Score = 64.1 bits (154), Expect = 2e-08, Method: Composition-based stats.
Identities = 38/242 (15%), Positives = 70/242 (28%), Gaps = 26/242 (10%)
Query: 5 GRQENQMRE---------ISLTRRVSK-YAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT 54
GR E RE + L A G+ G+T L TA +
Sbjct: 62 GRAERDARELVLRIGESEVRLETGKIGLQANGAVFASEGETVLYNTACASRECTGDGSFV 121
Query: 55 KHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIII 114
AE T K+ R+ R++ R +R ++ Q++
Sbjct: 122 PLTVNYAERFSAAGRTSGGYKKRDGGLRENET--LKARLVDRPIRPMMYKGWGYETQVLQ 179
Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPI 174
A+ T AIT A AL ++ ++ + P+
Sbjct: 180 WLMSFDAERSTDALAITAASAALAVSDIPLKKPVVGVRVGLMPGSDE-----------PV 228
Query: 175 VDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
V+ + +D TD ++ ++ + D + ++ +A K
Sbjct: 229 VNPTSEQMKQSRLDLVLAGTDE-AVLMIE--GFCDFLTTDEMLRAIEKGQEAVAKACKEI 285
Query: 235 KD 236
Sbjct: 286 DA 287
>gi|325067095|ref|ZP_08125768.1| polynucleotide phosphorylase/polyadenylase [Actinomyces oris K20]
Length = 770
Score = 133 bits (334), Expect = 2e-29, Method: Composition-based stats.
Identities = 43/242 (17%), Positives = 83/242 (34%), Gaps = 14/242 (5%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
+R+ GR +R ++ V GS + + G+T +L TL E+ + H
Sbjct: 344 VRMDGRGLKDIRTLAAEVEVLPRVHGSAIFERGETQILGVTTLNMLRMEQQVDDLSPVTH 403
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P STG + A R+ G RAL V+ I
Sbjct: 404 KRYMHNYNFPPFSTGETGRVGAPKRREIGHGNL----AERALVPVLPTREDFPYAIRQVS 459
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+ + ++G T ++ + ++L + + + + + + G + D
Sbjct: 460 EALGSNGSTSMGSVCASTLSLLNAGVPLRAPVAGIAMGLMHE-----VIDGETKWATLTD 514
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED+ D+D T I +Q + + L A+D ++ +
Sbjct: 515 ILGSEDAFGDMDFKVAGTRDF-ITALQLDTKLDGLPSEVLAGALGQARDARLFILDVLAQ 573
Query: 237 VI 238
I
Sbjct: 574 AI 575
Score = 81.8 bits (200), Expect = 8e-14, Method: Composition-based stats.
Identities = 43/246 (17%), Positives = 73/246 (29%), Gaps = 39/246 (15%)
Query: 12 REISLTRR-VSKYAEGSCLVKF-GDTHLLTTATLE----EKVPMWIRNTKHGWITAEYGM 65
R + ++K A GS + G+T +L+ T+ ++ + G
Sbjct: 23 RVVRFETGRLAKQAAGSAMAYLDGETAVLSATTVGKHPKDQFDFFPLTVDVEERQYAAGR 82
Query: 66 LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125
+P S R GR G + R+I R LR Q++ I D
Sbjct: 83 IPGSFFRR------EGRAGTAAILACRLIDRPLRPSFVKGLRNEVQVVETVLAIHPDDDY 136
Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185
AI A ++ G VA ++ G+ + Y E
Sbjct: 137 DVLAINAASMSTQIAG-------------LPFSGPVAGTRLALIDGHWVAFPRYSEQQRA 183
Query: 186 DVDANFVM----TDSGHIVEVQGSAERATF----------SQDHFFAMLNLAKDRIADLI 231
+ I+ V+ A + ++ L AK I L
Sbjct: 184 TFQMVVAGRVLESGDVAIMMVEAGATEHAWELINAGAVAPTEAVVAEGLEAAKPHIKALC 243
Query: 232 KLQKDV 237
+ Q +V
Sbjct: 244 EAQLEV 249
>gi|325111014|ref|YP_004272082.1| polyribonucleotide nucleotidyltransferase [Planctomyces
brasiliensis DSM 5305]
gi|324971282|gb|ADY62060.1| Polyribonucleotide nucleotidyltransferase [Planctomyces
brasiliensis DSM 5305]
Length = 711
Score = 133 bits (334), Expect = 2e-29, Method: Composition-based stats.
Identities = 47/243 (19%), Positives = 84/243 (34%), Gaps = 18/243 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
RL GR +R+IS + GS L G+T L + TL +++ +
Sbjct: 318 RLDGRGPTDLRQISCKVGLVPRVHGSALFTRGETQSLASLTLGTVRDQQRVEDLFGEHTK 377
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
+Y S G R+ G R+++ V+ + I I D
Sbjct: 378 RFMLDYNFPSYSVGEVRPIRGPGRREIGHGAL----AERSVQWVLPDESAFPYTIRIISD 433
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ A +AL D + + V G + D+
Sbjct: 434 ITESNGSSSMASVCNATLALMDAGIPIRQPVAGISIGLVKDGDK---------YTLLTDI 484
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T G I +Q + +++ L A+ +L+K
Sbjct: 485 MGDEDHFGDMDFKIAGTQKG-ITGIQLDLKIDGINEEIIRGTLEQARKARLELLKAMLTE 543
Query: 238 ISN 240
I
Sbjct: 544 IRR 546
Score = 105 bits (261), Expect = 7e-21, Method: Composition-based stats.
Identities = 47/232 (20%), Positives = 79/232 (34%), Gaps = 26/232 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTA-TLE--EKVPMWIRNTKHGWITAEYGMLP 67
R + ++K A G+ L +FGDT LL A T E + + + A G P
Sbjct: 15 RIFKFSTGEIAKQASGAVLAQFGDTVLLVAAQTGPAREGIDFFPMTVDYRERFAAAGKFP 74
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R GR R+ R LR + S Q+ + +
Sbjct: 75 GGFLKR------EGRPSTHEILTARLTDRPLRPLFPKSFHDEVQVQSIVLSSDGENPSDV 128
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
+I GA A +G + A+ GM+ G I+ + D+
Sbjct: 129 VSINGASAA-------------LSLSPVPFQGPIGAVRVGMIEGEFILFPTKEQIDQGDL 175
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
D I+ ++G + +D L A I +L +LQ++++
Sbjct: 176 DLVVAGNKE-SILMIEGFGRQ--IPEDVMADALMFAHKGIIELCELQEELVK 224
>gi|291386759|ref|XP_002709750.1| PREDICTED: polyribonucleotide nucleotidyltransferase 1 [Oryctolagus
cuniculus]
Length = 784
Score = 133 bits (334), Expect = 2e-29, Method: Composition-based stats.
Identities = 48/247 (19%), Positives = 87/247 (35%), Gaps = 17/247 (6%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE--------EKVPMWIRN 53
R GR +R IS + K GS L + G T +L T T + +++ I
Sbjct: 358 RCDGRDLTSLRNISCEVDMFKTLHGSALFQRGQTQVLCTVTFDSLESSIKSDRITTAING 417
Query: 54 TKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQII 113
K Y P +T K V+ R+ G +AL V+ I
Sbjct: 418 IKDKNFMLHYEFPPYATNEIGKVTGVNRRELGHGAL----AEKALYPVIPKDFPF--TIR 471
Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP 173
+ +V++++G + A+ G +AL D + + V K + +
Sbjct: 472 VTSEVLESNGSSSMASACGGSLALMDAGVPISSPVAGVAIGLVTKN--NSEKGDIEDYRL 529
Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
+ D+ ED D+D T+ G I +Q + + A +++++
Sbjct: 530 LTDILGIEDYNGDMDFKIAGTNKG-ITALQADIKLPGIPIKIVMEAIQQASVAKKEILQI 588
Query: 234 QKDVISN 240
+S
Sbjct: 589 MNKTLSK 595
Score = 75.3 bits (183), Expect = 8e-12, Method: Composition-based stats.
Identities = 42/219 (19%), Positives = 78/219 (35%), Gaps = 25/219 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTA---TLEEKVPMWIRNTKHGWITAEYGMLP 67
R++ ++ ++++A+GS +V+ GDT ++ TA T + A G +P
Sbjct: 54 RKLEISSGKLARFADGSAVVQSGDTAVMVTAVSKTKPSPSQFMPLVVDYRQKAAAAGRIP 113
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
+ R + R+I R++R + Q++ + +
Sbjct: 114 TNYLRREIGS------SDKEILTSRIIDRSIRPLFPAGYFYDTQVLCNLLAVDGINEPDV 167
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
AI GA VA G V A+ GM+ G +V+ E S+ +
Sbjct: 168 LAINGASVA-------------LSLSDIPWNGPVGAVRIGMIDGECVVNPTRKEMSSSTL 214
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226
+ IV ++ SAE Q F + +
Sbjct: 215 NLVVAGAPKSQIVMLEASAEN--ILQQDFCHAIKVGMKH 251
>gi|154506293|ref|ZP_02043031.1| hypothetical protein RUMGNA_03835 [Ruminococcus gnavus ATCC 29149]
gi|153793432|gb|EDN75852.1| hypothetical protein RUMGNA_03835 [Ruminococcus gnavus ATCC 29149]
Length = 718
Score = 133 bits (334), Expect = 2e-29, Method: Composition-based stats.
Identities = 39/242 (16%), Positives = 73/242 (30%), Gaps = 12/242 (4%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT--LEEKVPMWIRNTKHGWI 59
R GR +Q+R ++ + GS + G T + T T I
Sbjct: 334 RPDGRAIDQIRPLAAETDLIPRVHGSAMFTRGQTQ-ICTVTTLAPLSEAQRIDGLDEAET 392
Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119
+ Y V S G R + RAL V+ A I +
Sbjct: 393 SKRYMHHYNFPSYSVGETKPSRGPGRREIGHGALAERALLPVLPSEAEFPYAIRTVSETF 452
Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179
+++G T A++ + ++L ++ V + D+
Sbjct: 453 ESNGSTSQASVCASSMSLMTAGVPIKAAVAGISAGLV-------TGETDDDYLVLTDIQG 505
Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI-KLQKDVI 238
ED D+D T G I +Q + ++ + K ++ ++ I
Sbjct: 506 LEDFFGDMDFKVAGTHKG-ITAIQMDIKIHGLTRPIIEEAIAATKKARTYILDEVMNKAI 564
Query: 239 SN 240
+
Sbjct: 565 AE 566
Score = 93.8 bits (231), Expect = 2e-17, Method: Composition-based stats.
Identities = 37/234 (15%), Positives = 75/234 (32%), Gaps = 27/234 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----HGWITAEYGML 66
R + + V+K A G+ L+ +GDT +L TAT EK I + G +
Sbjct: 34 RTLRVDVDRVAKQANGAVLMHYGDTTVLCTATASEKPRDGIDFFPLSVEYNERLYAVGKI 93
Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
P R G+ + R+I R +R + + + D
Sbjct: 94 PGGFNKR------EGKASENAILTCRVIDRPMRPLFPKDYRNDVTLENLVMSVDQDCSPE 147
Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
A+ GA +A G ++ G++ G + + + D
Sbjct: 148 LTAMLGAAIAT-------------SISDIPFDGPISTTQVGLVDGEFVFNPTAAQKEVSD 194
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
+ T ++ ++ A + + A + +I + +++
Sbjct: 195 LALTVASTKE-KVIMIEAGANEVP--EAQMIEAIFAAHELNQKVIAFIETIVAE 245
>gi|313681466|ref|YP_004059204.1| polyribonucleotide nucleotidyltransferase [Sulfuricurvum kujiense
DSM 16994]
gi|313154326|gb|ADR33004.1| polyribonucleotide nucleotidyltransferase [Sulfuricurvum kujiense
DSM 16994]
Length = 725
Score = 133 bits (334), Expect = 2e-29, Method: Composition-based stats.
Identities = 50/236 (21%), Positives = 83/236 (35%), Gaps = 15/236 (6%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE--EKVPMWIRNTKHGW 58
+R GR N++R IS+ V A S L G T L TL + M+ T G
Sbjct: 342 VRADGRALNEVRPISIETNVLPSAHASALFTRGQTQALVVLTLGGAKDAQMFENLTDSGT 401
Query: 59 ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDV 118
+ + G V + G R + RAL + I + +V
Sbjct: 402 QNEGFMVHYNFPGFSVGEPSPIGAPRRRELGHGNLAKRALEGACV---RNGQTIRLVSEV 458
Query: 119 IQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLD 178
++++G + A + G ++AL + D + V +G AI ++
Sbjct: 459 LESNGSSSMATVCGGYMALRAGDIEVADPIAGVAMGMVQEGSRHAILTDIM--------- 509
Query: 179 YGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
ED D+D G I +Q + D L AK+ + +I +
Sbjct: 510 GLEDHDGDLDFKVAG-SKGGITAMQMDIKLGGIHLDVLKEALYQAKEARSHIIDIM 564
Score = 59.5 bits (142), Expect = 4e-07, Method: Composition-based stats.
Identities = 26/189 (13%), Positives = 58/189 (30%), Gaps = 24/189 (12%)
Query: 20 VSKYAEGSCLVKFGDTHLLTTATLEE----KVPMWIRNTKHGWITAEYGMLPRSTGNRVK 75
V+ A G+ +K GDT +L T ++E ++ + G P R
Sbjct: 21 VAAQANGAAWLKCGDTVILATVVIDETDFVDEDFLPLTVQYIEKSYAAGKFPGGFIKR-- 78
Query: 76 REAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWV 135
+ R++ R+LR + QI + ++
Sbjct: 79 ----ETKPSDFETLTSRIVDRSLRPLFPKGFANPVQITVMV-------------LSADRE 121
Query: 136 ALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTD 195
A L + + + V+A+ G + G + + + +D +
Sbjct: 122 ADLQVLALNAASAALYVSDIDIFNSVSAVRVGKIDGEIVFNPTLSQLQKSTLDLYLAGSK 181
Query: 196 SGHIVEVQG 204
++ ++
Sbjct: 182 ED-MLMIEM 189
>gi|320533267|ref|ZP_08033971.1| polyribonucleotide nucleotidyltransferase [Actinomyces sp. oral
taxon 171 str. F0337]
gi|320134517|gb|EFW26761.1| polyribonucleotide nucleotidyltransferase [Actinomyces sp. oral
taxon 171 str. F0337]
Length = 785
Score = 133 bits (334), Expect = 2e-29, Method: Composition-based stats.
Identities = 42/242 (17%), Positives = 83/242 (34%), Gaps = 14/242 (5%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
+R+ GR +R ++ V GS + + G+T +L TL E+ + H
Sbjct: 344 VRMDGRGLKDIRTLAAEVEVLPRVHGSAIFERGETQILGVTTLNMLRMEQQVDDLSPVTH 403
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P STG + A R+ G RA+ V+ I
Sbjct: 404 KRYMHNYNFPPFSTGETGRVGAPKRREIGHGNL----AERAIVPVLPAREDFPYAIRQVS 459
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+ + ++G T ++ + ++L + + + + + + G + D
Sbjct: 460 EALGSNGSTSMGSVCASTLSLLNAGVPLRAPVAGIAMGLMHE-----VIDGETKWATLTD 514
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED+ D+D T I +Q + + L A+D ++ +
Sbjct: 515 ILGSEDAFGDMDFKVAGTRDF-ITALQLDTKLDGLPSEVLAGALGQARDARLFILDVLAQ 573
Query: 237 VI 238
I
Sbjct: 574 AI 575
Score = 81.8 bits (200), Expect = 7e-14, Method: Composition-based stats.
Identities = 43/246 (17%), Positives = 73/246 (29%), Gaps = 39/246 (15%)
Query: 12 REISLTRR-VSKYAEGSCLVKF-GDTHLLTTATLE----EKVPMWIRNTKHGWITAEYGM 65
R + ++K A GS + G+T +L+ T+ ++ + G
Sbjct: 23 RVVRFETGRLAKQAAGSAMAYLDGETAVLSATTVGKHPKDQFDFFPLTVDVEERQYAAGR 82
Query: 66 LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125
+P S R GR G + R+I R LR Q++ I D
Sbjct: 83 IPGSFFRR------EGRAGTAAILACRLIDRPLRPSFVKGLRNEVQVVETVLAIHPDDDY 136
Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185
AI A ++ G VA ++ G+ + Y E
Sbjct: 137 DVLAINAASMSTQIAG-------------LPFSGPVAGTRLALIDGHWVAFPRYSEQQRA 183
Query: 186 DVDANFVM----TDSGHIVEVQGSAERATF----------SQDHFFAMLNLAKDRIADLI 231
+ I+ V+ A + ++ L AK I L
Sbjct: 184 TFQMVVAGRVLESGDVAIMMVEAGATEHAWELINAGAVAPTEAVVAEGLEAAKPHIKALC 243
Query: 232 KLQKDV 237
+ Q +V
Sbjct: 244 EAQLEV 249
>gi|317125320|ref|YP_004099432.1| guanosine pentaphosphate synthetase I/polyribonucleotide
nucleotidyltransferase [Intrasporangium calvum DSM
43043]
gi|315589408|gb|ADU48705.1| guanosine pentaphosphate synthetase I/polyribonucleotide
nucleotidyltransferase [Intrasporangium calvum DSM
43043]
Length = 747
Score = 133 bits (334), Expect = 2e-29, Method: Composition-based stats.
Identities = 40/242 (16%), Positives = 79/242 (32%), Gaps = 14/242 (5%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
+R+ GR +R + V GS + + G+T ++ TL E+ +
Sbjct: 339 VRIDGRGLADIRALGAEVEVLPRVHGSAIFERGETQIMGVTTLNMLKMEQQLDTLSPQTR 398
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P STG + + R+ G RAL V+ I
Sbjct: 399 KRYMHNYNFPPYSTGETGRVGSPKRREIGHGAL----AERALMPVLPTREEFPYAIRQVS 454
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+ + ++G T ++ + ++L + + + V G + D
Sbjct: 455 EALSSNGSTSMGSVCASTLSLLNAGVPLRAPVAGIAMGLVSDE-----VDGETRYAALTD 509
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED+ D+D T + +Q + L A+D ++ + +
Sbjct: 510 ILGAEDAFGDMDFKVAGTKEF-VTAIQLDTKLDGIPATVLAGALTQARDARLHILDVMAE 568
Query: 237 VI 238
I
Sbjct: 569 AI 570
Score = 68.7 bits (166), Expect = 6e-10, Method: Composition-based stats.
Identities = 36/241 (14%), Positives = 73/241 (30%), Gaps = 39/241 (16%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGD-THLLTTATLE----EKVPMWIRNTKHGWITAEYGM 65
R++ ++K A G+ + + T +++T + ++ + G
Sbjct: 21 RKVRFETGRLAKQAGGAVVAYLDEDTMIMSTTSAGKTPKDQFDFFPLTVDVEERMYAIGK 80
Query: 66 LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125
+P S R GR + R+I R LR Q+II + D
Sbjct: 81 IPGSFFRR------EGRPTTDAILTCRLIDRPLRPTFKKGLRNEVQVIISVFALNPDHQY 134
Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185
AI A + G V + ++ G + ++ +
Sbjct: 135 DVLAINAASASTQ-------------ISGLPFSGPVGGVRVSLIDGQWVAFPNFSDIERS 181
Query: 186 DVDANFVM---TDSGHIVEVQGSAERATF-----------SQDHFFAMLNLAKDRIADLI 231
D D I+ V+ + +T+ +++ L +K I L
Sbjct: 182 VFDMVVAGRVVGDDVAIMMVEAESTDSTWDLVKNEGKQAPTEEVVAEGLESSKKFIKVLC 241
Query: 232 K 232
+
Sbjct: 242 E 242
>gi|154497054|ref|ZP_02035750.1| hypothetical protein BACCAP_01347 [Bacteroides capillosus ATCC
29799]
gi|150273453|gb|EDN00581.1| hypothetical protein BACCAP_01347 [Bacteroides capillosus ATCC
29799]
Length = 716
Score = 133 bits (334), Expect = 2e-29, Method: Composition-based stats.
Identities = 48/244 (19%), Positives = 88/244 (36%), Gaps = 18/244 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +N++R +S V GS L G T +L+ ATL + I +
Sbjct: 322 RVDGRAKNEIRPLSAEVGVLPKVHGSGLFTRGQTQVLSVATLNTLAASQKLDTIWEEEEK 381
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + + R+ G RAL V+ I + +
Sbjct: 382 RYMHHYNFPPYSVGEAKAPRSTNRREYGHGAL----AERALVPVLPSVDEFPYAIRVVSE 437
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
V+ ++G T +I G+ +AL D ++ + + +D+
Sbjct: 438 VLSSNGSTSQGSICGSTLALMDAGVPIKAPVAGISCGLIQDDDGS--------FQTFIDI 489
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI-KLQKD 236
ED ++D T +G I +Q + + + L + KD ++ ++
Sbjct: 490 QGVEDFHGEMDFKVAGTKAG-ITAIQMDLKNDGLTHEIIKQALEITKDARYAILDEIMLP 548
Query: 237 VISN 240
I+
Sbjct: 549 CIAE 552
Score = 86.1 bits (211), Expect = 4e-15, Method: Composition-based stats.
Identities = 35/234 (14%), Positives = 70/234 (29%), Gaps = 27/234 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKHGWITAEYGML 66
R S+ ++ A + LV++GDT + + + V + + G +
Sbjct: 23 RPFSIEVGKTAELANAAALVRYGDTTVHVAICVSPRPRDGVDFFPLSVDFEEKLYAVGRI 82
Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
P S R GR + R+I R +R + I + D
Sbjct: 83 PGSFMRR------EGRPSLPAVLASRLIDRPIRPLFPYDFRNDVCITCTVMSVDYDCSPE 136
Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
A+ G + G + + G G + + + T
Sbjct: 137 VTAMIGV-------------SACLSYSEIPFAGPIGCLEVGYCDGEIVFNPTQEQRKTSR 183
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
+D T+ +V ++ A D + + A + I + ++S
Sbjct: 184 MDVTVAATEK-KVVMIEAGA--DQIPDDIMYEGIVKAHEEIKKQVAFINGIVSQ 234
>gi|330997766|ref|ZP_08321601.1| polyribonucleotide nucleotidyltransferase [Paraprevotella
xylaniphila YIT 11841]
gi|329569654|gb|EGG51419.1| polyribonucleotide nucleotidyltransferase [Paraprevotella
xylaniphila YIT 11841]
Length = 742
Score = 133 bits (334), Expect = 2e-29, Method: Composition-based stats.
Identities = 46/240 (19%), Positives = 81/240 (33%), Gaps = 18/240 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHG 57
RL GR ++R I GS + G+T L+T T L+EK+ +
Sbjct: 325 RLDGRATTEIRPIWCEVSPLPGPHGSAIFTRGETQSLSTCTLGTKLDEKIIDEVLEQSKM 384
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P STG + V R+ G R L+ + + + D
Sbjct: 385 RFLLHYNFPPFSTGEAKAQRGVGRREIGHGHL----AWRGLKGQIP--EDFPYTVRVVSD 438
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+++++G + A + +AL D M+ + + + G + D+
Sbjct: 439 ILESNGSSSMATVCAGTLALMDAGVPMKKPVSGIAMGLIKN-------PGEEKYAVLSDI 491
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T G + Q + S + L AK ++ +
Sbjct: 492 LGDEDHLGDMDFKTTGTIDG-LTATQMDIKCDGLSYEILEKALMQAKAGREHILGKLTEC 550
Score = 104 bits (260), Expect = 8e-21, Method: Composition-based stats.
Identities = 35/235 (14%), Positives = 73/235 (31%), Gaps = 25/235 (10%)
Query: 3 LSGRQENQMREISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
GR IS+ ++K A+G+ ++ G+T LL T +
Sbjct: 11 PDGRT------ISIETGKLAKQADGAVMLTMGNTMLLATVCAAKDAVPGTDFMPLQVEYR 64
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
E G+ R++ RALR + + + +
Sbjct: 65 EKFAAAGRFP--GGFTKREGKASDYEILTCRLVDRALRPLFPSNYHAEVYVNVILYSADG 122
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
L + +G ++ + + G +V+ + +
Sbjct: 123 VDMPDA-------------LAGFAASAALAVSDIPFEGPISEVRVARINGEYVVNPTFAQ 169
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
D+D T+ +I+ V+ E ++ L +A + I + +LQK+
Sbjct: 170 LEQADMDIMVGATEE-NIMMVE--GEMKEVTEQDLLNALKVAHEAIKPMCRLQKE 221
>gi|253682340|ref|ZP_04863137.1| polyribonucleotide nucleotidyltransferase [Clostridium botulinum D
str. 1873]
gi|253562052|gb|EES91504.1| polyribonucleotide nucleotidyltransferase [Clostridium botulinum D
str. 1873]
Length = 706
Score = 133 bits (333), Expect = 2e-29, Method: Composition-based stats.
Identities = 49/248 (19%), Positives = 89/248 (35%), Gaps = 19/248 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R GR +++R +S + GS L G T +++ ATL E +V I
Sbjct: 312 RPDGRSFDEIRPLSAETSLLPRTHGSGLFSRGLTQVMSVATLGSVSEGQVLDGIDEETSK 371
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y S G + R+ G +A+ ++ I + +
Sbjct: 372 RYMHHYNFPSYSVGEVRPLRGPNRREIGHGAL----AEKAIEPLIPSEQEFPYAIRVVSE 427
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
V+ ++G T A++ G+ +AL D ++ + + V + + D+
Sbjct: 428 VLSSNGSTSQASVCGSTLALLDAGVPIKRPAAGIAMGLVTSED-------LSKEEILTDI 480
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T+ G I +Q + S D + A+ ++K+ D
Sbjct: 481 QGLEDFFGDMDFKVAGTEKG-ITAIQVDTKIEGLSNDCIKKAIGDARTARLTILKVINDC 539
Query: 238 I---SNEV 242
I EV
Sbjct: 540 IDKPREEV 547
Score = 85.3 bits (209), Expect = 7e-15, Method: Composition-based stats.
Identities = 38/234 (16%), Positives = 73/234 (31%), Gaps = 27/234 (11%)
Query: 12 REISLTRRVSKYAEGSCL-VKFGDTHLLTTATLE----EKVPMWIRNTKHGWITAEYGML 66
R++ L + +GDT +L E + + + ++ G +
Sbjct: 12 RKLKGEFGKLGMLSDCALNISYGDTVVLVNVNASPAPKEGIDFFPLSIEYQERLYAVGKI 71
Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
P R GR R+ R I R LR + Q++ + D
Sbjct: 72 PGGFIKR------EGRPSDRAILNARAIDRPLRPLFPKGYRNDVQVVCTVVSVDQDNLPN 125
Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
A+ GA +AL S V +S G++ G IV+ +
Sbjct: 126 ILAMNGASLALC-------------LSSIPFTKPVGTVSVGLIDGEFIVNPTSKQREESI 172
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
+D T ++ ++ E +D + + + + Q+ V+
Sbjct: 173 LDLTVCATKE-RVMMIEAGGEE--IPEDVMYDAIMFGFEECKKIADFQEKVMEQ 223
>gi|182626381|ref|ZP_02954135.1| polyribonucleotide nucleotidyltransferase [Clostridium perfringens
D str. JGS1721]
gi|177908332|gb|EDT70880.1| polyribonucleotide nucleotidyltransferase [Clostridium perfringens
D str. JGS1721]
Length = 702
Score = 133 bits (333), Expect = 2e-29, Method: Composition-based stats.
Identities = 49/248 (19%), Positives = 88/248 (35%), Gaps = 19/248 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R GR +Q+R I + G+ L G T ++T ATL E ++ I +
Sbjct: 312 RPDGRAFDQVRNIGCEVGLLPRTHGTGLFTRGLTQVMTVATLGSISEIQILDGIGEEESK 371
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y S G R+ G RAL ++ A I + +
Sbjct: 372 RYMHHYNFPAYSVGEVRPLRGPGRREIGHGAL----AERALEPLIPSEAEFPYTIRLVSE 427
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
V+ ++G T A++ G+ +AL D ++ + + + + + D+
Sbjct: 428 VLSSNGSTSQASVCGSTLALLDAGVPIKRPAAGIAMGLITSKD-------LTEEEVLTDI 480
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T+ G I +Q + S+ + A+ ++ K+
Sbjct: 481 QGLEDFFGDMDFKVAGTEEG-ITSIQVDTKIKGLSEKVIHDAIYGARKARLMILDKIKEC 539
Query: 238 I---SNEV 242
I EV
Sbjct: 540 IPAPREEV 547
Score = 89.1 bits (219), Expect = 5e-16, Method: Composition-based stats.
Identities = 41/233 (17%), Positives = 78/233 (33%), Gaps = 27/233 (11%)
Query: 12 REISLTRRVSKY-AEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----HGWITAEYGML 66
R + + ++ + L+ +GDT +LT EK I + G +
Sbjct: 12 RPMKVEFGKLGMLSDAAILMSYGDTVILTNVNASEKPREGIDFFPLSVEYEERLYSVGKI 71
Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
P R G+ ++ R I R LR + Q++ ++ D
Sbjct: 72 PGGFIKR------EGKPSEKAILNGRAIDRPLRPLFPKGYRNDVQVVCTVVSVENDNLPE 125
Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
AI A +AL S VAA+ G++ I++ E
Sbjct: 126 ILAINAASMALC-------------LSSIPFTTPVAAVQVGLIGEEFILNPTSKEREESS 172
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
+ T ++ ++ + +D + D+ D+IK Q++ +S
Sbjct: 173 LQLTVCATKE-RVMMIEAGGDE--IPEDTMINAIKFGFDKCQDIIKFQEEAVS 222
>gi|11514054|pdb|1E3P|A Chain A, Tungstate Derivative Of Streptomyces Antibioticus Pnpase
Gpsi Enzyme
Length = 757
Score = 133 bits (333), Expect = 2e-29, Method: Composition-based stats.
Identities = 39/241 (16%), Positives = 80/241 (33%), Gaps = 14/241 (5%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +R ++ GS L + G+T +L TL E+ +
Sbjct: 356 RIDGRGVTDIRTLAAEVEAIPRVHGSALFERGETQILGVTTLNMLRMEQQLDTLSPVTRK 415
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + + R+ G RA+ V+ I +
Sbjct: 416 RYMHNYNFPPYSVGETGRVGSPKRREIGHGAL----AERAIVPVLPTREEFPYAIRQVSE 471
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ ++G T ++ + ++L + ++ + + + G + D+
Sbjct: 472 ALGSNGSTSMGSVCASTMSLLNAGVPLKAPVAGIAMGLISQEI-----NGETHYVALTDI 526
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED+ D+D T + +Q + A L A+D ++ + +
Sbjct: 527 LGAEDAFGDMDFKVAGTKEF-VTALQLDTKLDGIPASVLAAALKQARDARLHILDVMMEA 585
Query: 238 I 238
I
Sbjct: 586 I 586
Score = 78.0 bits (190), Expect = 1e-12, Method: Composition-based stats.
Identities = 39/240 (16%), Positives = 66/240 (27%), Gaps = 39/240 (16%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGD-THLLTTATLEEKVPMWIRNT----KHGWITAEYGM 65
R I +++ A GS + D T +L+ T + + G
Sbjct: 37 RTIRFETGRLARQAAGSAVAYLDDDTMVLSATTASKNPKDQLDFFPLTVDVEERMYAAGK 96
Query: 66 LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125
+P S R GR + R+I R LR Q++ + D
Sbjct: 97 IPGSFFRR------EGRPSEDAILTCRLIDRPLRPSFKKGLRNEIQVVATIMALNPDHLY 150
Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185
AI A + G + + ++ G + + E
Sbjct: 151 DVVAINAASASTQLAG-------------LPFSGPIGGVRVALIRGQWVAFPTHTELEDA 197
Query: 186 DVDANFVMT----DSGHIVEVQGSAERATF----------SQDHFFAMLNLAKDRIADLI 231
D I+ V+ A T +++ A L+ AK I L
Sbjct: 198 VFDMVVAGRVLEDGDVAIMMVEAEATEKTIQLVKDGAEAPTEEVVAAGLDAAKPFIKVLC 257
>gi|296273302|ref|YP_003655933.1| polyribonucleotide nucleotidyltransferase [Arcobacter nitrofigilis
DSM 7299]
gi|296097476|gb|ADG93426.1| polyribonucleotide nucleotidyltransferase [Arcobacter nitrofigilis
DSM 7299]
Length = 725
Score = 133 bits (333), Expect = 3e-29, Method: Composition-based stats.
Identities = 42/243 (17%), Positives = 81/243 (33%), Gaps = 22/243 (9%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWI------RNT 54
+R GR +R IS+ + A SCL G+T L ATL + ++T
Sbjct: 334 VRADGRGLKTVRPISIDTNILPSAHSSCLFTRGETQALVVATLAGAKDGQMFETLNEKST 393
Query: 55 KHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIII 114
Y S G V R+ G +R + + + +
Sbjct: 394 SMENFMVHYNFPGFSVGEAKPMFGVGRRELGHGNLGKRALEATIDRDFAD------TVRL 447
Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPI 174
++++++G + A + G +AL + + V++G + ++
Sbjct: 448 VSEILESNGSSSMATVCGGSLALKAAGVPISGLVAGVAMGMVVEGDKHCVLTDIM----- 502
Query: 175 VDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
ED D+D +G I +Q + L AK+ ++ L
Sbjct: 503 ----GLEDHDGDMDFKVAGPKTG-ITALQMDIKLGGIELSVLKEALLQAKEGREHILTLM 557
Query: 235 KDV 237
++
Sbjct: 558 EEA 560
Score = 75.3 bits (183), Expect = 7e-12, Method: Composition-based stats.
Identities = 36/237 (15%), Positives = 73/237 (30%), Gaps = 43/237 (18%)
Query: 16 LTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----HGWITAEYGMLPRST 70
V+K A GS L K G+ +L T E P T + +P
Sbjct: 16 FEFNKVAKQANGSVLAKCGNAVILATVVSEFDNPGSEDFTPLTVQYIEKAYAAAKIPGGF 75
Query: 71 GNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAI 130
R + R+I R+LR + + I + D +T A+
Sbjct: 76 FKR------ESKPSELETLTSRIIDRSLRPLFPKGYVYPTTITVMVLSADKDVDLQTLAL 129
Query: 131 TGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDAN 190
A AL+ + +K VA + + G IV+ + + +D
Sbjct: 130 NAASAALYT-------------SNIPVKKSVAGVRIAKIDGEYIVNPNVTDMVNSTLDLY 176
Query: 191 FVMTDSGHIVEVQGSA------------------ERATFSQDHFFAMLNLAKDRIAD 229
+ ++ ++ A + +++ +++A+ + +
Sbjct: 177 VAGSKD-ELLMIEMRAISSEDMVEVDIEAFSKIHKTNEMTEEELVEAISIAQIALKE 232
>gi|320094033|ref|ZP_08025857.1| polyribonucleotide nucleotidyltransferase [Actinomyces sp. oral
taxon 178 str. F0338]
gi|319979038|gb|EFW10557.1| polyribonucleotide nucleotidyltransferase [Actinomyces sp. oral
taxon 178 str. F0338]
Length = 785
Score = 133 bits (333), Expect = 3e-29, Method: Composition-based stats.
Identities = 45/242 (18%), Positives = 80/242 (33%), Gaps = 14/242 (5%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKH 56
+R+ GR Q+R +S V GS L + G+T +L TL E+ +
Sbjct: 344 IRMDGRTPRQIRSLSAEVEVLPRVHGSALFQRGETQILGVTTLAMLRMEQQIDNLSPVNS 403
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
+Y P STG + + R+ G RAL V+ I
Sbjct: 404 KRYMHQYNFAPFSTGEVGRVGSPKRREIGHGDL----AERALVPVLPTREEFPYAIRQVS 459
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+ + ++G + ++ + ++L + + + G + D
Sbjct: 460 ETMGSNGSSSMGSVCASTLSLLQAGVPLRAPVAGIAMGLMT-----GEVDGQPKAVTLTD 514
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T I +Q + A L A+D ++ L
Sbjct: 515 ILGAEDGFGDMDFKVAGTRDF-ITALQLDTKLDGIDSQLLRAALGQARDARLAILDLINQ 573
Query: 237 VI 238
I
Sbjct: 574 AI 575
Score = 80.7 bits (197), Expect = 2e-13, Method: Composition-based stats.
Identities = 45/242 (18%), Positives = 75/242 (30%), Gaps = 27/242 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGD-THLLTTATLE----EKVPMWIRNTKHGWITAEYGM 65
R I +++ A GS L D T +L+ T+ ++ + G
Sbjct: 22 RTIRFETGRLARQAAGSALAYLDDATTVLSATTVGKNPKDQFDFFPLTVDVEERAYAAGR 81
Query: 66 LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125
+P S R GR G + R+I R LR Q++ I D
Sbjct: 82 IPGSFFRR------EGRPGTEAILAARLIDRPLRPGFVKGLRNEVQVVETVLTIDPDDAY 135
Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185
AI A ++ +L+ V VA L + G T
Sbjct: 136 DVLAINAASMSTQIAGLPFTGPIGGTRLALVDGQWVAFPRWSELERSVFNIVVAGRIVTK 195
Query: 186 DVDANFVMTDSGHIVEVQGSAERATF----------SQDHFFAMLNLAKDRIADLIKLQK 235
D ++ I+ V+ + + +++ L AK I L + Q
Sbjct: 196 D-----DGSEDVAIMMVEAGGGKNEWELIQAGATAPTEEVVADGLEAAKPFIKALCRAQL 250
Query: 236 DV 237
+V
Sbjct: 251 EV 252
>gi|256371446|ref|YP_003109270.1| Polyribonucleotide nucleotidyltransferase [Acidimicrobium
ferrooxidans DSM 10331]
gi|256008030|gb|ACU53597.1| Polyribonucleotide nucleotidyltransferase [Acidimicrobium
ferrooxidans DSM 10331]
Length = 792
Score = 133 bits (333), Expect = 3e-29, Method: Composition-based stats.
Identities = 43/242 (17%), Positives = 83/242 (34%), Gaps = 18/242 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKH 56
+R+ GR +R + + + A GS L + G+T +L TL + + +
Sbjct: 335 VRIDGRDTTTIRPLLIEVGLIPTAHGSGLFQRGETQVLNICTLGMPRMNQQLDTLGVDEE 394
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y M P +TG R+ G RAL V+ + + +
Sbjct: 395 KRYMHHYNMPPFATGETGFMRGPKRREIGHGLL----AERALVPVLPPESEFPYALRLVS 450
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V+ ++G T A++ G+ ++L D + + + V
Sbjct: 451 EVLSSNGSTSMASVCGSTLSLMDAGVPIRAAVGGIAMGLIAHDGVYTTLTD--------- 501
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED+ D+D T + +Q + + A L A+ ++
Sbjct: 502 ILGAEDAFGDMDFKVAGTREF-VTALQLDTKIDGIPSEVLAAALEQARQARVSILDQMLA 560
Query: 237 VI 238
VI
Sbjct: 561 VI 562
Score = 84.1 bits (206), Expect = 2e-14, Method: Composition-based stats.
Identities = 42/246 (17%), Positives = 76/246 (30%), Gaps = 34/246 (13%)
Query: 13 EISLTRR-VSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKHGWITAEYGMLP 67
+ ++ A G+ + + G T +L TAT E + + G +P
Sbjct: 16 PLRFETGKLALQANGAVVARLGGTTVLVTATGAKHVREGIDFFPLTVDVEERMYAAGKIP 75
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
S R GR ++ R+I R LR ++
Sbjct: 76 GSFFRR------EGRATDQAILTARLIDRPLRPSFADGFRNEVHVVATVLGADLVNPHDV 129
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
AI A AL E +++ P G+ S+ ++
Sbjct: 130 LAINAASAALMVSGLPFEGPIGAVRVAL----------AADGSWIPFPTFQQGDASSFEL 179
Query: 188 DANFVMTDSG---HIVEVQGSAERATF----------SQDHFFAMLNLAKDRIADLIKLQ 234
T G I+ V+ AT+ ++ L AK I + I+LQ
Sbjct: 180 VVAGRKTSDGTDIAIMMVEAGGTEATWGAFEANAAIPTEATVAEGLVAAKQWIRESIELQ 239
Query: 235 KDVISN 240
+++++
Sbjct: 240 EELVAK 245
>gi|18310662|ref|NP_562596.1| polynucleotide phosphorylase/polyadenylase [Clostridium perfringens
str. 13]
gi|168214487|ref|ZP_02640112.1| polyribonucleotide nucleotidyltransferase [Clostridium perfringens
CPE str. F4969]
gi|81766989|sp|Q8XJS4|PNP_CLOPE RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|18145343|dbj|BAB81386.1| polyribonucleotide nucleotidyltransferase [Clostridium perfringens
str. 13]
gi|170714049|gb|EDT26231.1| polyribonucleotide nucleotidyltransferase [Clostridium perfringens
CPE str. F4969]
Length = 702
Score = 133 bits (333), Expect = 3e-29, Method: Composition-based stats.
Identities = 49/248 (19%), Positives = 88/248 (35%), Gaps = 19/248 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R GR +Q+R I + G+ L G T ++T ATL E ++ I +
Sbjct: 312 RPDGRAFDQVRNIGCEVGLLPRTHGTGLFTRGLTQVMTVATLGSISEIQILDGIGEEESK 371
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y S G R+ G RAL ++ A I + +
Sbjct: 372 RYMHHYNFPAYSVGEVRPLRGPGRREIGHGAL----AERALEPLIPSEAEFPYTIRLVSE 427
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
V+ ++G T A++ G+ +AL D ++ + + + + + D+
Sbjct: 428 VLSSNGSTSQASVCGSTLALLDAGVPIKRPAAGIAMGLITSKD-------LTEEEVLTDI 480
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T+ G I +Q + S+ + A+ ++ K+
Sbjct: 481 QGLEDFFGDMDFKVAGTEEG-ITSIQVDTKIKGLSEKVIHDAIYGARKARLMILDKIKEC 539
Query: 238 I---SNEV 242
I EV
Sbjct: 540 IPAPREEV 547
Score = 89.1 bits (219), Expect = 5e-16, Method: Composition-based stats.
Identities = 41/233 (17%), Positives = 78/233 (33%), Gaps = 27/233 (11%)
Query: 12 REISLTRRVSKY-AEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----HGWITAEYGML 66
R + + ++ + L+ +GDT +LT EK I + G +
Sbjct: 12 RPMKVEFGKLGMLSDAAILMSYGDTVILTNVNASEKPREGIDFFPLSVEYEERLYSVGKI 71
Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
P R G+ ++ R I R LR + Q++ ++ D
Sbjct: 72 PGGFIKR------EGKPSEKAILNGRAIDRPLRPLFPKGYRNDVQVVCTVVSVENDNLPE 125
Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
AI A +AL S VAA+ G++ I++ E
Sbjct: 126 ILAINAASMALC-------------LSSIPFTTPVAAVQVGLIGEEFILNPTSKEREESS 172
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
+ T ++ ++ + +D + D+ D+IK Q++ +S
Sbjct: 173 LQLTVCATKE-RVMMIEAGGDE--IPEDTMINAIKFGFDKCQDIIKFQEEAVS 222
>gi|169342748|ref|ZP_02863788.1| polyribonucleotide nucleotidyltransferase [Clostridium perfringens
C str. JGS1495]
gi|169299254|gb|EDS81324.1| polyribonucleotide nucleotidyltransferase [Clostridium perfringens
C str. JGS1495]
Length = 702
Score = 133 bits (333), Expect = 3e-29, Method: Composition-based stats.
Identities = 49/248 (19%), Positives = 88/248 (35%), Gaps = 19/248 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R GR +Q+R I + G+ L G T ++T ATL E ++ I +
Sbjct: 312 RPDGRAFDQVRNIGCEVGLLPRTHGTGLFTRGLTQVMTVATLGSISEIQILDGIGEEESK 371
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y S G R+ G RAL ++ A I + +
Sbjct: 372 RYMHHYNFPAYSVGEVRPLRGPGRREIGHGAL----AERALEPLIPSEAEFPYTIRLVSE 427
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
V+ ++G T A++ G+ +AL D ++ + + + + + D+
Sbjct: 428 VLSSNGSTSQASVCGSTLALLDAGVPIKRPAAGIAMGLITSKD-------LTEEEVLTDI 480
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T+ G I +Q + S+ + A+ ++ K+
Sbjct: 481 QGLEDFFGDMDFKVAGTEEG-ITSIQVDTKIKGLSEKVIHDAIYGARKARLMILDKIKEC 539
Query: 238 I---SNEV 242
I EV
Sbjct: 540 IPAPREEV 547
Score = 88.7 bits (218), Expect = 6e-16, Method: Composition-based stats.
Identities = 41/233 (17%), Positives = 78/233 (33%), Gaps = 27/233 (11%)
Query: 12 REISLTRRVSKY-AEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----HGWITAEYGML 66
R + + ++ + L+ +GDT +LT EK I + G +
Sbjct: 12 RPMKVEFGKLGMLSDAAILMSYGDTVILTNVNASEKPREGIDFFPLSVEYEERLYSVGKI 71
Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
P R G+ ++ R I R LR + Q++ ++ D
Sbjct: 72 PGGFIKR------EGKPSEKAILNGRAIDRPLRPLFPKGYRNDVQVVCTVVSVENDNIPE 125
Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
AI A +AL S VAA+ G++ I++ E
Sbjct: 126 ILAINAASMALC-------------LSSIPFTTPVAAVQVGLIGEEFILNPTSKEREESS 172
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
+ T ++ ++ + +D + D+ D+IK Q++ +S
Sbjct: 173 LQLTVCATKE-RVMMIEAGGDE--IPEDTMINAIKFGFDKCQDIIKFQEEAVS 222
>gi|291530699|emb|CBK96284.1| polyribonucleotide nucleotidyltransferase [Eubacterium siraeum
70/3]
Length = 705
Score = 133 bits (333), Expect = 3e-29, Method: Composition-based stats.
Identities = 44/240 (18%), Positives = 79/240 (32%), Gaps = 11/240 (4%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R+ GR ++MR ++ + GS L G T ++T TL + T
Sbjct: 316 RVDGRGMDEMRPLAAEVGLLPRVHGSGLFTRGQTQVMTITTLGPVSDSQKLDGIDEEETK 375
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
Y V S G R + RAL V+ I + +V+ +
Sbjct: 376 RYMHHYNFPAYSVGETKASRGPGRREIGHGALAQRALEPVIPPVEEFPYAIRLVSEVLSS 435
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
+G T A+I G+ ++L D ++ + +G +VD+ E
Sbjct: 436 NGSTSQASICGSTLSLMDAGVPIKSPVAGISCGLITEGD---------RWMTMVDIQGLE 486
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI-KLQKDVISN 240
D D+D T G I +Q + + + ++ ++ I
Sbjct: 487 DFFGDMDFKVGGTHKG-ITAIQMDLKIDGLTPEIIKDAFAKTHKARDYILDEIMLKAIPE 545
Score = 89.5 bits (220), Expect = 3e-16, Method: Composition-based stats.
Identities = 39/232 (16%), Positives = 78/232 (33%), Gaps = 28/232 (12%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKHGWITAEYGML 66
RE+ + V A GSC V +G+T ++ T E V + + G +
Sbjct: 15 RELMVETGKVCGLANGSCWVHYGETVVMVNVTASAKPREGVDFFPLAVDYEEKLYAVGKI 74
Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
P R GR ++ R++ R +R + I++ + +
Sbjct: 75 PGGYLKR------EGRPSEKAILNSRVVDRPMRPLFPKDMRNDVAIVMTVLAVDPETQPE 128
Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
A+ GA +A+ G + IS G++ G ++ + + + D
Sbjct: 129 IIAMIGASIAV-------------SISDIPWNGPIGGISVGLVDGEIVLMPNAEQRAKSD 175
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRI-ADLIKLQKDV 237
+ ++ +V ++ A D + + I LI K +
Sbjct: 176 LQLTVASSEK-KVVMIEAGANE--VDDDTMLKAIMAGHEEINKSLIPFIKQI 224
>gi|291557792|emb|CBL34909.1| polyribonucleotide nucleotidyltransferase [Eubacterium siraeum
V10Sc8a]
Length = 705
Score = 133 bits (333), Expect = 3e-29, Method: Composition-based stats.
Identities = 44/240 (18%), Positives = 79/240 (32%), Gaps = 11/240 (4%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R+ GR ++MR ++ + GS L G T ++T TL + T
Sbjct: 316 RVDGRGMDEMRPLAAEVGLLPRVHGSGLFTRGQTQVMTITTLGPVSDSQKLDGIDEEETK 375
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
Y V S G R + RAL V+ I + +V+ +
Sbjct: 376 RYMHHYNFPAYSVGETKASRGPGRREIGHGALAQRALEPVIPPVEEFPYAIRLVSEVLSS 435
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
+G T A+I G+ ++L D ++ + +G +VD+ E
Sbjct: 436 NGSTSQASICGSTLSLMDAGVPIKSPVAGISCGLITEGD---------RWMTMVDIQGLE 486
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI-KLQKDVISN 240
D D+D T G I +Q + + + ++ ++ I
Sbjct: 487 DFFGDMDFKVGGTHKG-ITAIQMDLKIDGLTPEIIKDAFAKTHKARDYILDEIMLKAIPE 545
Score = 88.4 bits (217), Expect = 9e-16, Method: Composition-based stats.
Identities = 40/232 (17%), Positives = 78/232 (33%), Gaps = 28/232 (12%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKHGWITAEYGML 66
RE+ + V A GSC V +G+T ++ T E V + + G +
Sbjct: 15 RELMVETGKVCGLANGSCWVHYGETVVMVNVTASAKPREGVDFFPLAVDYEEKLYAVGKI 74
Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
P R GR ++ R++ R +R + I++ + +
Sbjct: 75 PGGYLKR------EGRPSEKAILNSRVVDRPMRPLFPKDMRNDVAIVMTVLAVDPETQPE 128
Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
A+ GA +A+ G + IS G++ G ++ D + + D
Sbjct: 129 IIAMIGASIAV-------------SISDIPWNGPIGGISVGLVDGEIVLMPDAKQRAKSD 175
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRI-ADLIKLQKDV 237
+ ++ +V ++ A D + + I LI K +
Sbjct: 176 LQLTVASSEK-KVVMIEAGANE--VDDDTMLKAIMAGHEEINKSLIPFIKQI 224
>gi|302874669|ref|YP_003843302.1| polyribonucleotide nucleotidyltransferase [Clostridium
cellulovorans 743B]
gi|307690717|ref|ZP_07633163.1| polynucleotide phosphorylase/polyadenylase [Clostridium
cellulovorans 743B]
gi|302577526|gb|ADL51538.1| polyribonucleotide nucleotidyltransferase [Clostridium
cellulovorans 743B]
Length = 705
Score = 133 bits (333), Expect = 3e-29, Method: Composition-based stats.
Identities = 41/243 (16%), Positives = 82/243 (33%), Gaps = 16/243 (6%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHG 57
R GR +++R I + G+ L G T +LT AT + ++ + +
Sbjct: 312 RPDGRAFDEVRNIGCEVDLLPRTHGTGLFTRGLTQVLTVATLGAIGDVQIIDGLGEEESK 371
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y S G R+ G +AL ++ I + +
Sbjct: 372 RYMHHYNFPAYSVGEVKPLRGPGRREIGHGAL----AEKALVPLIPSEEEFPYTIRLVSE 427
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
V+ ++G T A++ G+ +AL D ++ + + + + + D+
Sbjct: 428 VLSSNGSTSQASVCGSTLALLDAGVPIKRPAAGIAMGLITNED-------LTQEGVLTDI 480
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T G I +Q + S + A+ +++ +
Sbjct: 481 QGIEDFFGDMDFKVAGTTKG-ITAIQVDTKIKGLSDYVIRTAIEDARKARLHILEKIDEC 539
Query: 238 ISN 240
I
Sbjct: 540 IEK 542
Score = 88.7 bits (218), Expect = 5e-16, Method: Composition-based stats.
Identities = 38/231 (16%), Positives = 76/231 (32%), Gaps = 27/231 (11%)
Query: 12 REISLTRRVSKYAEGSC-LVKFGDTHLLTTATLEEKVPMWIRNTK----HGWITAEYGML 66
R + + L+ +GDT ++ A E I + G +
Sbjct: 12 RTLKVEFGKIGMLSNCAMLISYGDTVVMVNANASENPRDGIDFFPLSIEYEERFYSVGKI 71
Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
P R GR +S R I R +R + Q++ ++ D
Sbjct: 72 PGGFIKR------EGRPSEKSILNARAIDRPIRPLFPKGYRNDVQVVCTVLSVEQDNLPN 125
Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
A+ GA + L D VA +S G++ G +++ E
Sbjct: 126 ILAMNGASLGLLLSSIPFVD-------------PVATVSVGLIDGNFVLNPTVEERKLST 172
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
+D T ++ ++ S + ++ + +N ++ +IK Q++
Sbjct: 173 MDLTICATRE-RVMMIEASGDE--IPEEVMISAINYGFEQCQPIIKFQEEA 220
>gi|296223817|ref|XP_002757788.1| PREDICTED: polyribonucleotide nucleotidyltransferase 1,
mitochondrial [Callithrix jacchus]
Length = 784
Score = 133 bits (333), Expect = 3e-29, Method: Composition-based stats.
Identities = 48/247 (19%), Positives = 86/247 (34%), Gaps = 17/247 (6%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE--------EKVPMWIRN 53
R GR +R +S + K GS L + G T +L T T + ++V I
Sbjct: 358 RCDGRDLTSLRNVSCEVDMFKTLHGSALFQRGQTQVLCTVTFDSLESSIKSDQVITAING 417
Query: 54 TKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQII 113
K Y P +T K ++ R+ G +AL V+ I
Sbjct: 418 IKDKNFMLHYEFPPYATNEIGKVTGLNRRELGHGAL----AEKALYPVIPKDFPF--TIR 471
Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP 173
+ +V++++G + A+ G +AL D + + V K +
Sbjct: 472 VTSEVLESNGSSSMASACGGSLALMDSGVPISSAVAGVAIGLVTKTDP--EKGEIDDYRL 529
Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
+ D+ ED D+D T+ G I +Q + + A +++++
Sbjct: 530 LTDILGIEDYNGDMDFKMAGTNKG-ITALQADIKLPGIPIKIVMEAVQQASVAKKEILQI 588
Query: 234 QKDVISN 240
IS
Sbjct: 589 MNKTISK 595
Score = 77.2 bits (188), Expect = 2e-12, Method: Composition-based stats.
Identities = 41/218 (18%), Positives = 76/218 (34%), Gaps = 25/218 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTA---TLEEKVPMWIRNTKHGWITAEYGMLP 67
R++ ++ ++++A+GS +V+ GDT ++ T T + A G +P
Sbjct: 54 RKLEISSGKLARFADGSAVVQSGDTAVMVTVVSKTKPSPSQFMPLVVDYRQKAAAAGRIP 113
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
+ R + R+I R++R + Q++ + +
Sbjct: 114 TNYLRREIGT------SDKEILTSRVIDRSIRPLFPAGYFYDTQVLCNLLAVDGINEPDV 167
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
AI GA VA G V A+ GM+ G +V+ E S+ +
Sbjct: 168 LAINGASVA-------------LSLSDIPWNGPVGAVRIGMIDGECVVNPTRKEMSSSTL 214
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKD 225
+ IV ++ SAE Q F +
Sbjct: 215 NLVVAGAPKSQIVMLEASAEN--ILQQDFCHAIKFGVK 250
>gi|293192221|ref|ZP_06609390.1| polyribonucleotide nucleotidyltransferase [Actinomyces
odontolyticus F0309]
gi|292820337|gb|EFF79330.1| polyribonucleotide nucleotidyltransferase [Actinomyces
odontolyticus F0309]
Length = 781
Score = 133 bits (333), Expect = 3e-29, Method: Composition-based stats.
Identities = 45/242 (18%), Positives = 80/242 (33%), Gaps = 14/242 (5%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKH 56
+R+ GR Q+R +S V GS L + G+T +L TL E+ +
Sbjct: 344 IRMDGRTPRQIRSLSAEVEVLPRVHGSALFQRGETQILGITTLAMLRMEQQIDNLSPVNA 403
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
+Y P STG + + R+ G RAL V+ I
Sbjct: 404 KRYMHQYNFAPFSTGEVGRVGSPKRREIGHGDL----AERALVPVLPSREEFPYAIRQVS 459
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+ + ++G + ++ + ++L + + + G + D
Sbjct: 460 ETMGSNGSSSMGSVCASTLSLLQAGVPLRAPVAGIAMGLMT-----GEVDGQFKAVTLTD 514
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T I +Q + A L A+D ++ L
Sbjct: 515 ILGAEDGFGDMDFKVAGTRDF-ITALQLDTKLDGIDSQVLRAALAQARDARLAILDLINQ 573
Query: 237 VI 238
I
Sbjct: 574 AI 575
Score = 77.2 bits (188), Expect = 2e-12, Method: Composition-based stats.
Identities = 44/242 (18%), Positives = 74/242 (30%), Gaps = 27/242 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGD-THLLTTATLE----EKVPMWIRNTKHGWITAEYGM 65
R + ++K A GS L D T +L+ T+ ++ + G
Sbjct: 22 RTVRFETGRLAKQAAGSALAYLDDSTTVLSATTVGKNPKDQFDFFPLTVDVEERQYAAGR 81
Query: 66 LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125
+P S R GR G + R+I R LR Q++ I D
Sbjct: 82 IPGSFFRR------EGRAGTEAILAARLIDRPLRPGFVKGLRNEVQVVETVLTIDPDDAY 135
Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185
AI A ++ +L+ + VA L + G T
Sbjct: 136 DVLAINAASMSTQIAGLPFTGPIGGTRLALIDDQWVAFPRWSELERSVFNIVVAGRIVTK 195
Query: 186 DVDANFVMTDSGHIVEVQGSAERATF----------SQDHFFAMLNLAKDRIADLIKLQK 235
+ ++ I+ V+ + + ++D L AK I L + Q
Sbjct: 196 E-----DGSEDVAIMMVEAGGGKNQWELIQAGATAPTEDVVADGLEAAKPFIKVLCEAQL 250
Query: 236 DV 237
V
Sbjct: 251 KV 252
>gi|193690697|ref|XP_001944927.1| PREDICTED: polyribonucleotide nucleotidyltransferase 1,
mitochondrial-like [Acyrthosiphon pisum]
Length = 762
Score = 133 bits (333), Expect = 3e-29, Method: Composition-based stats.
Identities = 46/247 (18%), Positives = 84/247 (34%), Gaps = 16/247 (6%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE--------EKVPMWIRN 53
R GR+ + +R IS + K GS L + G T + T L+ + + +
Sbjct: 349 RCDGRKLDDLRNISCEVDLYKPLHGSALFQRGQTQVFCTVALDSIDSALKLDPMTILTSG 408
Query: 54 TKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQII 113
Y P +T + + R+ G R LRS+V I
Sbjct: 409 INEKNFFLHYEFPPYATNDIGRMGPSMRREIGHGAL----AERGLRSIVP--ENFPFTIR 462
Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP 173
+ +V++++G + A+I G +AL D + + + + S +
Sbjct: 463 LTSEVLESNGSSSMASICGGSLALMDAGVPISQPAAGVAIGLITNYDDND-SKHIKDYRI 521
Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
+ D+ ED D+D T G I +Q + + A +I +
Sbjct: 522 LTDILGIEDYLGDMDFKLAGTKKG-ITALQADIKIPGLPLKIVMEAVEAATSAKHKIINI 580
Query: 234 QKDVISN 240
I +
Sbjct: 581 MNATIQS 587
Score = 71.4 bits (173), Expect = 1e-10, Method: Composition-based stats.
Identities = 34/231 (14%), Positives = 66/231 (28%), Gaps = 42/231 (18%)
Query: 20 VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGNRVKREAV 79
++ ++G + GDT ++ T + LP + R K A
Sbjct: 52 YARLSDGCAVATLGDTSVMA-------------TTVSKSTKSSSNFLPLTVDYRQKAAAA 98
Query: 80 SGRQ----------GGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAA 129
R+I R+LR + + QI+ + + +
Sbjct: 99 GRIPTNYLRRELSVSEHEILTSRLIDRSLRPLFPSTYCFDTQIMCNLLAVDGINHPDILS 158
Query: 130 ITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDA 189
I A A G V A+ G+ + + E S +++
Sbjct: 159 INAASTA-------------LALSDIPWNGPVGAVRVGLCDNNLVTNPTRRELSNSELNL 205
Query: 190 NFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI----KLQKD 236
V ++ ++GSA Q + ++ LQK+
Sbjct: 206 VVVSAAKNLVIMLEGSANNVL--QQDVLKAIKFGVKECQHIVNCIDNLQKE 254
>gi|167750806|ref|ZP_02422933.1| hypothetical protein EUBSIR_01788 [Eubacterium siraeum DSM 15702]
gi|167656241|gb|EDS00371.1| hypothetical protein EUBSIR_01788 [Eubacterium siraeum DSM 15702]
Length = 705
Score = 133 bits (333), Expect = 3e-29, Method: Composition-based stats.
Identities = 44/240 (18%), Positives = 79/240 (32%), Gaps = 11/240 (4%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R+ GR ++MR ++ + GS L G T ++T TL + T
Sbjct: 316 RVDGRGMDEMRPLAAEVGLLPRVHGSGLFTRGQTQVMTITTLGPVSDSQKLDGIDEEETK 375
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
Y V S G R + RAL V+ I + +V+ +
Sbjct: 376 RYMHHYNFPAYSVGETKASRGPGRREIGHGALAQRALEPVIPPVEEFPYAIRLVSEVLSS 435
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
+G T A+I G+ ++L D ++ + +G +VD+ E
Sbjct: 436 NGSTSQASICGSTLSLMDAGVPIKSPVAGISCGLITEGD---------RWMTMVDIQGLE 486
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI-KLQKDVISN 240
D D+D T G I +Q + + + ++ ++ I
Sbjct: 487 DFFGDMDFKVGGTHKG-ITAIQMDLKIDGLTPEIIKDAFAKTHKARDYILDEIMLKAIPE 545
Score = 89.5 bits (220), Expect = 4e-16, Method: Composition-based stats.
Identities = 40/232 (17%), Positives = 78/232 (33%), Gaps = 28/232 (12%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKHGWITAEYGML 66
RE+ + V A GSC V +G+T ++ T E V + + G +
Sbjct: 15 RELMVETGKVCGLANGSCWVHYGETVVMVNVTASAKPREGVDFFPLAVDYEEKLYAVGKI 74
Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
P R GR ++ R++ R +R + I++ + +
Sbjct: 75 PGGYLKR------EGRPSEKAILNSRVVDRPMRPLFPKDMRNDVAIVMTVLAVDPETQPE 128
Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
A+ GA +A+ G + IS G++ G ++ D + + D
Sbjct: 129 IIAMIGASIAV-------------SISDIPWNGPIGGISVGLVDGEIVLMPDAEQRAKSD 175
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRI-ADLIKLQKDV 237
+ ++ +V ++ A D + + I LI K +
Sbjct: 176 LQLTVASSEK-KVVMIEAGANE--VDDDTMLKAIMAGHEEINKSLIPFIKQI 224
>gi|75349253|sp|Q53597|PNP_STRAT RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|642066|gb|AAB17498.1| guanosine pentaphosphate synthetase [Streptomyces antibioticus]
Length = 740
Score = 133 bits (333), Expect = 3e-29, Method: Composition-based stats.
Identities = 39/241 (16%), Positives = 80/241 (33%), Gaps = 14/241 (5%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +R ++ GS L + G+T +L TL E+ +
Sbjct: 339 RIDGRGVTDIRTLAAEVEAIPRVHGSALFERGETQILGVTTLNMLRMEQQLDTLSPVTRK 398
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + + R+ G RA+ V+ I +
Sbjct: 399 PYMHNYNFPPISVGETGRVGSPKRREIGHGAL----AERAIVPVLPTREEFPYAIRQVSE 454
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ ++G T ++ + ++L + ++ + + + G + D+
Sbjct: 455 ALGSNGSTSMGSVCASTMSLLNAGVPLKAPVAGIAMGLISQEI-----NGETHYVALTDI 509
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED+ D+D T + +Q + A L A+D ++ + +
Sbjct: 510 LGAEDAFGDMDFKVAGTKEF-VTALQLDTKLDGIPASVLAAALKQARDARLHILDVMMEA 568
Query: 238 I 238
I
Sbjct: 569 I 569
Score = 77.2 bits (188), Expect = 2e-12, Method: Composition-based stats.
Identities = 42/238 (17%), Positives = 71/238 (29%), Gaps = 35/238 (14%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGD-THLLTTATLEEKVPMWIRNT----KHGWITAEYGM 65
R I ++K A GS + D T +L+ T + + G
Sbjct: 20 RTIRFETGRLAKQAAGSAVAYLDDDTMVLSATTASKNPKDQLDFFPLTVDVEERMYAAGK 79
Query: 66 LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125
+P S R GR + R+I R LR Q++ + D
Sbjct: 80 IPGSFFRR------EGRPSEDAILTCRLIDRPLRPSFKKGLRNEIQVVATIMALNPDHLY 133
Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185
AI A + +++ + VA + ED+
Sbjct: 134 DVVAINAASASTQLAGLPFSGPYGGVRVALIRGQWVAFPTHTE-----------LEDAVF 182
Query: 186 DVDANFVMTDSG--HIVEVQGSAERATF----------SQDHFFAMLNLAKDRIADLI 231
D+ + + G I+ V+ A T +++ A L+ AK I L
Sbjct: 183 DMVVAGRVLEDGDVAIMMVEAEATEKTVQLVKDGAEAPTEEVVAAGLDAAKPFIKVLC 240
>gi|257096723|sp|B3DZ86|PNP_METI4 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
Length = 707
Score = 133 bits (333), Expect = 3e-29, Method: Composition-based stats.
Identities = 46/243 (18%), Positives = 82/243 (33%), Gaps = 13/243 (5%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL-----EEKVPMWIRNTKH 56
R GR +R I++ V + GS L G+T L ATL +++ + +
Sbjct: 313 RCDGRGPEDIRPIAIETSVVPRSHGSSLFCRGETQALCMATLASLNEAQELDAYGGGEQS 372
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P S G + S R+ G R+L V+ I +
Sbjct: 373 KRFLLHYFFPPFSVGEVGRITGQSRREIGHGAL----AERSLLPVIPSETDFPYAIRVSS 428
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
++++++G T A + G +AL D ++ + V + D
Sbjct: 429 EILESNGSTSMATVCGGSLALMDAGVPLKTSVAGISVGLVKGKEE---DFDWSRYCLLTD 485
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T G I Q + D + ++ ++
Sbjct: 486 ILGLEDHYGDMDFKIAGTRKG-ITGFQLDLKLRGIPLDVMAKAIFQSQKARMVILDCMDK 544
Query: 237 VIS 239
VI+
Sbjct: 545 VIN 547
Score = 109 bits (271), Expect = 5e-22, Method: Composition-based stats.
Identities = 50/238 (21%), Positives = 85/238 (35%), Gaps = 21/238 (8%)
Query: 6 RQENQMREISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYG 64
R+ + I ++K+A+GS V +G+T +L TA ++ E
Sbjct: 7 RKFGD-QTIVFETGKLAKFADGSVTVSYGETAVLVTAVSVTELKEDQDFLPLQVEYREKA 65
Query: 65 MLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGG 124
GR + RMI R LR + QI+
Sbjct: 66 AAAGRFP--GGYFRKEGRPTDKEILTSRMIDRPLRPLFPKGYFYETQILGTLLSADGQND 123
Query: 125 TRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDST 184
AI GA AL G V A+ G + G I++ + E
Sbjct: 124 PDVMAINGASAALM-------------VSDIPFYGPVGAVRIGQIDGRWIINPTHREREI 170
Query: 185 IDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNEV 242
D+D +V ++ + ++GSA F ++ F L A + ++I QK+ ++ +V
Sbjct: 171 SDIDLVYVGSEHYPL-MIEGSARE--FPEEEFVKALEFAHQHVQEVIAAQKE-LAEKV 224
>gi|290989317|ref|XP_002677284.1| predicted protein [Naegleria gruberi]
gi|284090891|gb|EFC44540.1| predicted protein [Naegleria gruberi]
Length = 248
Score = 133 bits (333), Expect = 3e-29, Method: Composition-based stats.
Identities = 61/243 (25%), Positives = 98/243 (40%), Gaps = 22/243 (9%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRN-TKHGWI 59
+R+ GR+ +++R I + A+GS + G+T +L +V + I
Sbjct: 13 LRVDGRRSHEIRNIKFKLNLFSRADGSAYYEQGNTRVLAAVYGPREVKNKSQMKNDRAII 72
Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119
EY M STG R ++ R I +I + SV+ QI I V+
Sbjct: 73 NCEYSMATFSTGERKRQFKKDRRSTE----ISVVIRQTFESVILTHLYPRTQIDIFMQVL 128
Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179
QADGGTR A I A +AL D M+D V + + G + G P+ DL+Y
Sbjct: 129 QADGGTRCACINAATLALLDAGIPMKDF-------------VVSCAAGFIQGSPLTDLNY 175
Query: 180 GEDSTIDVDANFV-MTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
ED D + + +Q ++ S D F +L A + + K+ + +
Sbjct: 176 IEDCAGGPDVPIALLPKHDKVTLLQMDSK---LSLDQFEKVLEHAIEGCKQIHKVIDEQL 232
Query: 239 SNE 241
Sbjct: 233 KKH 235
>gi|300868336|ref|ZP_07112962.1| Polyribonucleotide nucleotidyltransferase [Oscillatoria sp. PCC
6506]
gi|300333629|emb|CBN58148.1| Polyribonucleotide nucleotidyltransferase [Oscillatoria sp. PCC
6506]
Length = 714
Score = 132 bits (332), Expect = 3e-29, Method: Composition-based stats.
Identities = 44/244 (18%), Positives = 87/244 (35%), Gaps = 20/244 (8%)
Query: 1 MRLSGRQENQMREISLTRRVSK-YAEGSCLVKFGDTHLLTTATLE-----EKVPMWIRNT 54
+R+ GR+ +++R +S V GS L G T +++ TL + + +
Sbjct: 323 VRVDGRKLDEVRPVSCRVSVLPSRVHGSSLFNRGLTQVMSAVTLGTPGDAQDLGDDLHPQ 382
Query: 55 KHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIII 114
Y P S G + R+ G RA+ V+ A I +
Sbjct: 383 DEKRYLHHYNFPPYSVGETRPMRSPGRREIGHGAL----AERAILPVLPPQADFPYVIRV 438
Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPI 174
+V+ ++G T ++ + +AL D + + + + +G +
Sbjct: 439 VSEVLSSNGSTSMGSVCASTLALMDAGVPLIQPVSGAAMGLIKEGDEV---------RIL 489
Query: 175 VDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
D+ ED D+D TD+G I +Q + + ++ AK +++
Sbjct: 490 TDIQGIEDFLGDMDFKVAGTDTG-ITALQMDMKISGLPLQVIAEAIHKAKPARLHILEKM 548
Query: 235 KDVI 238
I
Sbjct: 549 LSTI 552
Score = 99 bits (247), Expect = 2e-19, Method: Composition-based stats.
Identities = 46/235 (19%), Positives = 89/235 (37%), Gaps = 26/235 (11%)
Query: 10 QMREISLTRRV-SKYAEGSCLVKFGDTHLLTTAT---LEEKVPMWIRNTKHGWITAEYGM 65
R+I L + + A G+ L++ GDT +L TAT E + + G
Sbjct: 11 DGRDIRLKIGLLAPQAGGAVLIQSGDTSVLVTATRAQGREGIDFLPLLVDYEERLYAGGK 70
Query: 66 LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125
+P R GR + R+I R LR + Q++ + +
Sbjct: 71 IPGGFLRR------EGRPPEKVTLTGRLIDRPLRPLFPSWLRDDIQVVATTLSMDEEVPP 124
Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185
A+TGA VA+ +AA+ G++ I++ Y E T
Sbjct: 125 DVLAVTGASVAVLLAKMPFYG-------------PMAAVRVGLVGDDFIINPTYKEIKTG 171
Query: 186 DVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
++D + G ++ V+ A + + ++ + +DLI+ Q+++++
Sbjct: 172 ELDLVVAGSPDG-VIMVEAGANQ--LPERDIIEAIDFGYEAASDLIQAQREIMAE 223
>gi|254172979|ref|ZP_04879653.1| exosome complex exonuclease 1 [Thermococcus sp. AM4]
gi|214033135|gb|EEB73963.1| exosome complex exonuclease 1 [Thermococcus sp. AM4]
Length = 248
Score = 132 bits (332), Expect = 3e-29, Method: Composition-based stats.
Identities = 60/242 (24%), Positives = 104/242 (42%), Gaps = 23/242 (9%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKV-PMWIRNTKHGWIT 60
R+ GR++ ++R+I + V K A+GS +++G +L ++ P ++ +
Sbjct: 16 RIDGRKKYELRKIHMEVGVLKNADGSAYIEWGKNKILAAVYGPREIHPKHLQRPDTAVLR 75
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
Y M P S R K RS EI ++I AL + L + + +V+Q
Sbjct: 76 VRYNMAPFSVEERKKPG-----PDRRSVEISKVIRGALEPALILEMFPRTVVDVFIEVLQ 130
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
AD GTR A IT A +AL D M D VAA + G + G ++DL+
Sbjct: 131 ADAGTRVAGITAASLALADAGVPMRDL-------------VAACAAGKIDGEIVLDLNKD 177
Query: 181 EDSTIDVDANF-VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
ED+ + D +M I +Q +++ F + LA + + Q++ +
Sbjct: 178 EDNYGEADVPVAIMPLKNDITLLQMDGY---LTKEEFIEAVKLAIKGAKAVYQKQREALK 234
Query: 240 NE 241
+
Sbjct: 235 EK 236
>gi|302542113|ref|ZP_07294455.1| polyribonucleotide nucleotidyltransferase [Streptomyces
hygroscopicus ATCC 53653]
gi|302459731|gb|EFL22824.1| polyribonucleotide nucleotidyltransferase [Streptomyces
himastatinicus ATCC 53653]
Length = 743
Score = 132 bits (332), Expect = 3e-29, Method: Composition-based stats.
Identities = 41/241 (17%), Positives = 81/241 (33%), Gaps = 14/241 (5%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +R ++ GS L + G+T +L TL E+ +
Sbjct: 339 RIDGRGVTDIRTLAAEVEAIPRVHGSALFERGETQILGVTTLNMLRMEQQLDTLSPETRR 398
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P STG + + R+ G RAL V+ I +
Sbjct: 399 RYMHNYNFPPYSTGETGRVGSPKRREIGHGAL----AERALLPVLPTREEFPYAIRQVSE 454
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ ++G T ++ + ++L + ++ + + + G + D+
Sbjct: 455 ALGSNGSTSMGSVCASTMSLLNAGVPLKAPVAGIAMGLISQEID-----GETHYVTLTDI 509
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED+ D+D T + +Q + A L A+D ++ + +
Sbjct: 510 LGAEDAFGDMDFKVAGTKQF-VTALQLDTKLDGIPASVLAAALKQARDARLHILDVMMEA 568
Query: 238 I 238
I
Sbjct: 569 I 569
Score = 81.8 bits (200), Expect = 8e-14, Method: Composition-based stats.
Identities = 41/243 (16%), Positives = 66/243 (27%), Gaps = 39/243 (16%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGD-THLLTTATLEEKVPMWIRNT----KHGWITAEYGM 65
R I +++ A GS + D T +L+ T + + G
Sbjct: 20 RTIRFETGRLARQAAGSAVAYLDDDTMVLSATTASKNPKDQLDFFPLTVDVEERMYAAGR 79
Query: 66 LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125
+P S R GR + R+I R LR Q++ + D
Sbjct: 80 IPGSFFRR------EGRPSEDAILTCRLIDRPLRPSFKKGLRNEIQVVETIMALNPDHLY 133
Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185
AI A + G + ++ G + + E
Sbjct: 134 DVVAINAASCSTQLAG-------------LPFSGPIGGTRVALIKGQWVAFPTHSELEEA 180
Query: 186 DVDANFVMT----DSGHIVEVQGSAERATF----------SQDHFFAMLNLAKDRIADLI 231
D I+ V+ A T +++ A L AK I L
Sbjct: 181 VFDMVVAGRVLEDGDVAIMMVEAEATTQTIQLVKDGAEAPTEEIVAAGLEAAKPYIKVLC 240
Query: 232 KLQ 234
K Q
Sbjct: 241 KAQ 243
>gi|124006215|ref|ZP_01691050.1| polyribonucleotide nucleotidyltransferase [Microscilla marina ATCC
23134]
gi|123988139|gb|EAY27797.1| polyribonucleotide nucleotidyltransferase [Microscilla marina ATCC
23134]
Length = 712
Score = 132 bits (332), Expect = 3e-29, Method: Composition-based stats.
Identities = 44/241 (18%), Positives = 78/241 (32%), Gaps = 15/241 (6%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHL----LTTATLEEKVPMWIRNTKHG 57
R+ GR +++R I GS L G+T L+E
Sbjct: 319 RIDGRDFSEIRPIWGEVNYLPATHGSALFTRGETQSLTTLTLGTKLDELFIDNATFKGTQ 378
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y STG S R+ G RAL+ ++ I I D
Sbjct: 379 KFMLHYNFPGFSTGEVKPNRGASRREIGHGNL----AYRALKGMLPKDEDNPYTIRIVSD 434
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+++++G + A + +AL D ++ + + + + D+
Sbjct: 435 IMESNGSSSMATVCAGTMALMDGGISIKAPVSGIAMGLISDESD------PENYAVLSDI 488
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T G I Q + S D L A++ ++ +++
Sbjct: 489 LGDEDHLGDMDFKVTGTRDG-ITACQMDIKMEGLSYDILTKALAQAREGRLHILDKIEEI 547
Query: 238 I 238
I
Sbjct: 548 I 548
Score = 97.6 bits (241), Expect = 1e-18, Method: Composition-based stats.
Identities = 40/232 (17%), Positives = 71/232 (30%), Gaps = 27/232 (11%)
Query: 10 QMREISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRN----TKHGWITAEYG 64
R+I+L +++ A GS +V G T LL T +++ + A G
Sbjct: 14 DGRKITLETGKLARQANGSVVVTMGQTMLLATVVSQKEAKDDVDFLPLSVDFQERFAAAG 73
Query: 65 MLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGG 124
+P R GR R++ RA+R + Q
Sbjct: 74 KVPGGFLKR------EGRLSNYEILTCRLVDRAMRPLFPGDYHADTQ------------- 114
Query: 125 TRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDST 184
I+ D L + S G A + + G +++
Sbjct: 115 INIFLISSDPEVPADALAALAASSAVSVSDIPFNGPTAEVRVARVNGEFVINPSVEAIEE 174
Query: 185 IDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
D+D T ++ V+ E S+ + + I L + QK+
Sbjct: 175 ADLDIMLAAT-LDSVLMVE--GEMQEVSEQDMLDAIRFGHEVIKTLCQAQKE 223
>gi|256832257|ref|YP_003160984.1| guanosine pentaphosphate synthetase I/polyribonucleotide
nucleotidyltransferase [Jonesia denitrificans DSM 20603]
gi|256685788|gb|ACV08681.1| guanosine pentaphosphate synthetase I/polyribonucleotide
nucleotidyltransferase [Jonesia denitrificans DSM 20603]
Length = 735
Score = 132 bits (332), Expect = 3e-29, Method: Composition-based stats.
Identities = 41/244 (16%), Positives = 81/244 (33%), Gaps = 14/244 (5%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
+R+ GR +R +S V GS L + G+T ++ TL E+ +
Sbjct: 339 VRIDGRGLADIRTLSAEVEVVPRVHGSALFERGETQIMGITTLNMLKMEQQIDSLGPETR 398
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P STG + + R+ G RAL V+ I
Sbjct: 399 KRYMHNYNFPPYSTGETGRVGSPKRREIGHGAL----AERALVPVLPSREDFPYAIRQVS 454
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+ + ++G T ++ + ++L + + + + G + D
Sbjct: 455 EALGSNGSTSMGSVCASTLSLLNAGVPLRAPVAGIAMGLISD-----TVDGETRYAALTD 509
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED+ D+D T + +Q + L A+D ++ + ++
Sbjct: 510 ILGAEDAYGDMDFKVAGTRDF-VTAIQLDTKLDGIPASVLAGALTQARDARYTILDVIEE 568
Query: 237 VISN 240
I
Sbjct: 569 AIDQ 572
>gi|223940166|ref|ZP_03632028.1| ribonuclease PH [bacterium Ellin514]
gi|223891183|gb|EEF57682.1| ribonuclease PH [bacterium Ellin514]
Length = 255
Score = 132 bits (332), Expect = 3e-29, Method: Composition-based stats.
Identities = 99/217 (45%), Positives = 138/217 (63%), Gaps = 4/217 (1%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK--HGW 58
+R GR Q+R + ++ YA GS LV++G+T ++ T+EE VP W++ GW
Sbjct: 17 LRTDGRLPGQLRPLRFQNHIAPYATGSTLVEWGNTRVICGVTVEESVPRWMKEQNVIGGW 76
Query: 59 ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDV 118
ITAEY MLP ST R +R+ G+ GRSQEIQR+IGRA+R+ +DL +GSR I +DCDV
Sbjct: 77 ITAEYSMLPYSTLQRKQRDISKGKIDGRSQEIQRLIGRAMRAAIDLEKIGSRTIWVDCDV 136
Query: 119 IQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLD 178
+QADGGTRTAAITGA+VAL ++ + + + VAA+S G++ P++DL
Sbjct: 137 LQADGGTRTAAITGAYVALSLAVRKLMSEGKLKES--PMLHAVAAVSVGVVNRQPLLDLC 194
Query: 179 YGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDH 215
Y ED+ VD N VM G +E+QG+ E ATFS+
Sbjct: 195 YVEDAAAAVDLNLVMNSVGEFIELQGTGEEATFSETE 231
>gi|124026371|ref|YP_001015487.1| polynucleotide phosphorylase/polyadenylase [Prochlorococcus marinus
str. NATL1A]
gi|187610310|sp|A2C412|PNP_PROM1 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|123961439|gb|ABM76222.1| polyribonucleotide nucleotidyltransferase [Prochlorococcus marinus
str. NATL1A]
Length = 722
Score = 132 bits (332), Expect = 3e-29, Method: Composition-based stats.
Identities = 49/243 (20%), Positives = 86/243 (35%), Gaps = 19/243 (7%)
Query: 2 RLSGRQENQMREISLTRRVSK-YAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
R+ GR+ N++R I V GS L + G T +L+TATL + + +
Sbjct: 323 RVDGRELNEVRAIEADAAVLPNRVHGSALFQRGLTQVLSTATLGTPSDAQEMDDLNPNTD 382
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P S G R+ G RAL V+ + +
Sbjct: 383 KTYIHHYNFPPYSVGETRPMRTPGRREVGHGAL----AERALIPVLPAKDTFPYVLRVVS 438
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V+ ++G T A++ G+ +AL D ++ + + +G + D
Sbjct: 439 EVLSSNGSTSMASVCGSTLALMDAGVPLKAPVGGAAMGLIKEGKEV---------RILTD 489
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T+ G I +Q + + +N A ++ D
Sbjct: 490 IQGIEDFLGDMDFKVAGTEKG-ITALQMDMKITGLPIETIGEAINQALPARTHILGKMLD 548
Query: 237 VIS 239
I
Sbjct: 549 AIE 551
Score = 122 bits (306), Expect = 4e-26, Method: Composition-based stats.
Identities = 58/235 (24%), Positives = 91/235 (38%), Gaps = 26/235 (11%)
Query: 10 QMREISLTRR-VSKYAEGSCLVKFGDTHLLTTAT---LEEKVPMWIRNTKHGWITAEYGM 65
REI LT + A GS +++ GDT +L TAT E V + G
Sbjct: 11 DGREIKLTTGRFAPQAGGSVMIECGDTSVLVTATKSSGREGVDFLPLMCDYEERLYAAGR 70
Query: 66 LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125
+P S R GR R+ I R+I R +R + QI+ C +
Sbjct: 71 IPGSFMRR------EGRPPERATLISRLIDRPMRPLFPGWMRDDIQIVATCLSLDERVPA 124
Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185
A+TGA +A +G +AA+ G+L +++ Y E
Sbjct: 125 DVLAVTGASMATLMAGI-------------PFQGPMAAVRVGLLGDDFVLNPSYREIERG 171
Query: 186 DVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
D+D T G +V V+ A + S+ ++ + I +LI QK+V+
Sbjct: 172 DLDLVVAGTPDG-VVMVEAGANQ--LSEQDVIEAIDFGYEAITELINAQKEVLKE 223
>gi|118443480|ref|YP_878203.1| polynucleotide phosphorylase/polyadenylase [Clostridium novyi NT]
gi|187610259|sp|A0Q0Q1|PNP_CLONN RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|118133936|gb|ABK60980.1| polyribonucleotide nucleotidyltransferase [Clostridium novyi NT]
Length = 705
Score = 132 bits (332), Expect = 4e-29, Method: Composition-based stats.
Identities = 48/248 (19%), Positives = 89/248 (35%), Gaps = 19/248 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R GR +++R +S + GS L G T +++ ATL E +V I
Sbjct: 312 RPDGRYFDEIRPLSSEVSLLPRTHGSGLFTRGLTQVMSVATLGSISEGQVLDGIEEETSK 371
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y S G + R+ G +A+ ++ I + +
Sbjct: 372 RYMHHYNFPSYSVGEVRPLRGPNRREIGHGAL----AEKAIEPLIPSEQEFPYAIRVVSE 427
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
V+ ++G T A++ G+ +AL D M+ + + V + + D+
Sbjct: 428 VLSSNGSTSQASVCGSTLALLDAGVPMKRPAAGIAMGLVTSED-------LEKEEILTDI 480
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T+ G I +Q + S D + A+ ++++ +
Sbjct: 481 QGLEDFFGDMDFKVAGTEKG-ITAIQVDTKIKGLSNDCIKKAITNARKARLTILEVINNC 539
Query: 238 I---SNEV 242
I EV
Sbjct: 540 IDKPREEV 547
Score = 85.3 bits (209), Expect = 7e-15, Method: Composition-based stats.
Identities = 36/234 (15%), Positives = 72/234 (30%), Gaps = 27/234 (11%)
Query: 12 REISLTRRVSKYAEGSCL-VKFGDTHLLTTATLE----EKVPMWIRNTKHGWITAEYGML 66
R + L + +GDT +L E + + + ++ G +
Sbjct: 12 RTLKGEFGKLGMLSDCALNISYGDTVVLVNVNASPEPKEGIDFFPLSIEYQERLYAVGKI 71
Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
P R GR ++ R I R LR + Q++ + D
Sbjct: 72 PGGFIKR------EGRPSDKAILNARAIDRPLRPLFPKGYRNDVQVVCTVVSVDQDNLPN 125
Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
A+ GA +AL S V +S G++ G I++ +
Sbjct: 126 ILAMNGASLALC-------------LSSIPFTIPVGTVSVGLIDGEFIINPTSKQREESI 172
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
+D T ++ ++ E +D + + + + Q+ V+
Sbjct: 173 LDLTVCATKD-RVMMIEAGGEE--IPEDVMYDAIMFGFEECKKIADFQQKVMEQ 223
>gi|323477463|gb|ADX82701.1| exosome complex exonuclease 1 [Sulfolobus islandicus HVE10/4]
Length = 245
Score = 132 bits (332), Expect = 4e-29, Method: Composition-based stats.
Identities = 53/242 (21%), Positives = 101/242 (41%), Gaps = 23/242 (9%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKV-PMWIRNTKHGWIT 60
R+ GR+ ++R I + V K A+GS + + G+T + +++ P + +
Sbjct: 16 RIDGRKPEELRSIKIELGVLKNADGSAIFEMGNTKAIAAVYGPKEMHPRHLSLPDRAVLR 75
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
Y M P ST R + R E+ ++I AL S V + I + +++Q
Sbjct: 76 VRYHMTPFSTDERK-----NPAPSRREIELSKVIREALESAVLVELFPRTAIDVFTEILQ 130
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
AD G+R ++ A +AL D M D +A ++ G G ++DL+
Sbjct: 131 ADAGSRLVSLMAASLALADAGIPMRDL-------------IAGVAVGKADGVIVLDLNEP 177
Query: 181 EDSTIDVDANF-VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
ED + D +M + Q + + + F +LA I + L+++ +
Sbjct: 178 EDMWGEADMPVAMMPSLNQVTLFQLNGN---MTPEEFRQAFDLAVKGINIIYNLEREALK 234
Query: 240 NE 241
++
Sbjct: 235 SK 236
>gi|284174962|ref|ZP_06388931.1| exosome complex exonuclease Rrp41 [Sulfolobus solfataricus 98/2]
gi|299689089|pdb|3L7Z|B Chain B, Crystal Structure Of The S. Solfataricus Archaeal Exosome
gi|299689092|pdb|3L7Z|E Chain E, Crystal Structure Of The S. Solfataricus Archaeal Exosome
gi|299689095|pdb|3L7Z|H Chain H, Crystal Structure Of The S. Solfataricus Archaeal Exosome
gi|261602405|gb|ACX92008.1| exosome complex exonuclease 1 [Sulfolobus solfataricus 98/2]
Length = 245
Score = 132 bits (332), Expect = 4e-29, Method: Composition-based stats.
Identities = 55/242 (22%), Positives = 102/242 (42%), Gaps = 23/242 (9%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKV-PMWIRNTKHGWIT 60
R GR+ +++R I + V K A+GS + + G+T + +++ P + +
Sbjct: 16 RTDGRKPDELRSIKIELGVLKNADGSAIFEMGNTKAIAAVYGPKEMHPRHLSLPDRAVLR 75
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
Y M P ST R + R E+ ++I AL S V + I + +++Q
Sbjct: 76 VRYHMTPFSTDERK-----NPAPSRREIELSKVIREALESAVLVELFPRTAIDVFTEILQ 130
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
AD G+R ++ A +AL D M D +A ++ G G I+DL+
Sbjct: 131 ADAGSRLVSLMAASLALADAGIPMRDL-------------IAGVAVGKADGVIILDLNET 177
Query: 181 EDSTIDVDANF-VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
ED + D +M + Q + + + D F +LA I + L+++ +
Sbjct: 178 EDMWGEADMPIAMMPSLNQVTLFQLNG---SMTPDEFRQAFDLAVKGINIIYNLEREALK 234
Query: 240 NE 241
++
Sbjct: 235 SK 236
>gi|146302862|ref|YP_001190178.1| exosome complex exonuclease Rrp41 [Metallosphaera sedula DSM 5348]
gi|145701112|gb|ABP94254.1| ribosomal RNA-processing protein RRP41/SKI6 [Metallosphaera sedula
DSM 5348]
Length = 245
Score = 132 bits (332), Expect = 4e-29, Method: Composition-based stats.
Identities = 64/242 (26%), Positives = 108/242 (44%), Gaps = 23/242 (9%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKV-PMWIRNTKHGWIT 60
RL GR+ +++R + + V K A+GS LV+ G+T ++ ++ P + +
Sbjct: 16 RLDGRRPDELRPMKMEIGVLKNADGSSLVEVGNTKIIAAVYGPREMHPRHLALPNRATLR 75
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
Y M P ST R R E+ ++I AL S + + I + +VIQ
Sbjct: 76 VRYHMTPFSTDERKSPV-----PSRREIELSKVIREALESSILVEQFPRSSIDVFMEVIQ 130
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
AD GTR A++ A +A+ D ++D +AA++ G G ++DL+
Sbjct: 131 ADAGTRLASLMAASLAVVDAGIPVKDV-------------IAAVAVGKADGVVVLDLNEP 177
Query: 181 EDSTIDVDANFVM-TDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
ED + D M G I +Q + +Q F L LA I+ + L+K+V+
Sbjct: 178 EDMWGEADMPVAMLPSLGQITLIQLNGN---MTQQEFKQGLELAYKGISTIYNLEKEVLR 234
Query: 240 NE 241
N+
Sbjct: 235 NK 236
>gi|332881702|ref|ZP_08449350.1| polyribonucleotide nucleotidyltransferase [Capnocytophaga sp. oral
taxon 329 str. F0087]
gi|332680341|gb|EGJ53290.1| polyribonucleotide nucleotidyltransferase [Capnocytophaga sp. oral
taxon 329 str. F0087]
Length = 742
Score = 132 bits (332), Expect = 4e-29, Method: Composition-based stats.
Identities = 46/240 (19%), Positives = 81/240 (33%), Gaps = 18/240 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHG 57
RL GR +R I GS + G+T L+T T L+EK+ + +
Sbjct: 325 RLDGRATTDIRPIWCEVSPLPGPHGSAIFTRGETQSLSTCTLGTKLDEKIIDEVLDQSKM 384
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P STG + V R+ G R L+ + + + D
Sbjct: 385 RFLLHYNFPPFSTGEAKAQRGVGRREIGHGHL----AWRGLKGQIPTD--FPYTVRVVSD 438
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+++++G + A + +AL D M+ + + + G + D+
Sbjct: 439 ILESNGSSSMATVCAGTLALMDAGVPMKKPVSGIAMGLIKN-------PGEEKYAVLSDI 491
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T G + Q + S + L AK ++ +
Sbjct: 492 LGDEDHLGDMDFKTTGTIDG-LTATQMDIKCDGLSYEILEKALMQAKAGREHILGKLTEC 550
Score = 104 bits (259), Expect = 1e-20, Method: Composition-based stats.
Identities = 35/235 (14%), Positives = 73/235 (31%), Gaps = 25/235 (10%)
Query: 3 LSGRQENQMREISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
GR IS+ ++K A+G+ ++ G+T LL T +
Sbjct: 11 PDGRT------ISIETGKLAKQADGAVMLTMGNTMLLATVCAAKDAVPGTDFMPLQVEYR 64
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
E G+ R++ RALR + + + +
Sbjct: 65 EKFAAAGRFP--GGFTKREGKASDYEILTCRLVDRALRPLFPSNYHAEVYVNVILYSADG 122
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
L + +G ++ + + G +V+ + +
Sbjct: 123 VDMPDA-------------LAGFAASAALAVSDIPFEGPISEVRVARVNGEYVVNPTFAQ 169
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
D+D T+ +I+ V+ E ++ L +A + I + +LQK+
Sbjct: 170 LEQADMDIMVGATEE-NIMMVE--GEMKEVTEQDLLNALKVAHEAIKPMCRLQKE 221
>gi|288930697|ref|YP_003434757.1| exosome complex exonuclease 1 [Ferroglobus placidus DSM 10642]
gi|288892945|gb|ADC64482.1| exosome complex exonuclease 1 [Ferroglobus placidus DSM 10642]
Length = 245
Score = 132 bits (332), Expect = 4e-29, Method: Composition-based stats.
Identities = 58/245 (23%), Positives = 100/245 (40%), Gaps = 26/245 (10%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKV-PMWIRNTKHGWIT 60
R+ GR +++R I + V K A+GSC ++ G ++ KV P + + +
Sbjct: 13 RIDGRLPDELRPIKIEAGVLKNADGSCYLEMGKNKVMAAVYGPRKVQPKHLADPTQAIVR 72
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
Y M P S R + RS EI ++ AL S++ I I +V+Q
Sbjct: 73 YRYNMAPFSVEERKRPG-----PDRRSVEISKVSREALESIIMKELFPRSSIDIFVEVLQ 127
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
AD G+RTA + A VAL D +KG + +++ + G ++D
Sbjct: 128 ADAGSRTACLNAASVALVDAGI-------------PMKGIITSVAVAKVDGVLVLDPMKE 174
Query: 181 EDSTIDVD----ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
ED+ + D I +Q +++ + LAK ++ KLQ++
Sbjct: 175 EDNYGEADIPFAFFIRNGKIESIALLQMDGR---VTKEELMQAVELAKKGAMEIYKLQRE 231
Query: 237 VISNE 241
I +
Sbjct: 232 AIMRK 236
>gi|18977940|ref|NP_579297.1| exosome complex exonuclease Rrp41 [Pyrococcus furiosus DSM 3638]
gi|29336822|sp|Q8U0L9|ECX1_PYRFU RecName: Full=Probable exosome complex exonuclease 1
gi|18893710|gb|AAL81692.1| ribonuclease ph (rph) [Pyrococcus furiosus DSM 3638]
Length = 250
Score = 132 bits (332), Expect = 4e-29, Method: Composition-based stats.
Identities = 62/242 (25%), Positives = 102/242 (42%), Gaps = 23/242 (9%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKV-PMWIRNTKHGWIT 60
RL GR++ ++R I + V K A GS +++G ++ ++ P ++ +
Sbjct: 17 RLDGRKKYELRPIKMKVGVLKNANGSAYIEWGKNKIIAAVYGPREIHPKHLQRPDRAILR 76
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
Y M P S R K RS EI ++I AL + L I + +V+Q
Sbjct: 77 VRYNMAPFSVEERKKPG-----PDRRSIEISKVIRGALEPALILEMFPRTAIDVFIEVLQ 131
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
AD GTR A IT A +AL D M D VAA S G + G ++DL+
Sbjct: 132 ADAGTRVAGITAASLALADAGIPMRDL-------------VAACSAGKIEGEIVLDLNKE 178
Query: 181 EDSTIDVDANF-VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
ED+ + D +M I +Q +++ F + LA + + Q++ +
Sbjct: 179 EDNYGEADVPVAIMPIKNDITLLQMDGY---LTKEEFIEAVKLAIKGAKAVYQKQREALK 235
Query: 240 NE 241
+
Sbjct: 236 EK 237
>gi|52550028|gb|AAU83877.1| ribonuclease PH [uncultured archaeon GZfos34H10]
Length = 242
Score = 132 bits (332), Expect = 4e-29, Method: Composition-based stats.
Identities = 67/242 (27%), Positives = 105/242 (43%), Gaps = 23/242 (9%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKV-PMWIRNTKHGWIT 60
RLSGR ++R I + V K A+GSC + G+ ++ ++ P +N K +
Sbjct: 14 RLSGRGFEELRPIKIEVGVLKRADGSCYFELGNNKVIAGVYGPREMHPRHFQNAKMAVVK 73
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
Y M P S +R + RSQEI + +AL V+ I + +V+Q
Sbjct: 74 YRYNMAPFSVDDRKRPG-----PDRRSQEISMVSRKALDPVILRELYPKTAIEVYVEVLQ 128
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
+D GTRTA I A VAL D M D V++++ G + G ++DLD
Sbjct: 129 SDAGTRTAGINAASVALADAGIPMRDL-------------VSSVAIGKIDGEVVLDLDAK 175
Query: 181 EDSTIDVDANFVM-TDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
ED+ + D M + I +Q ++ F L LA D + +LQK +
Sbjct: 176 EDNFGEADMPIAMIARTNTITLLQMDGR---LKKEEFERGLKLAMDGSRKIYELQKAALV 232
Query: 240 NE 241
+
Sbjct: 233 EK 234
>gi|300676790|gb|ADK26666.1| polyribonucleotide nucleotidyltransferase 1 [Zonotrichia
albicollis]
gi|300676888|gb|ADK26760.1| polyribonucleotide nucleotidyltransferase 1 [Zonotrichia
albicollis]
Length = 765
Score = 132 bits (332), Expect = 4e-29, Method: Composition-based stats.
Identities = 45/247 (18%), Positives = 87/247 (35%), Gaps = 17/247 (6%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE--------EKVPMWIRN 53
R GR +R+I + K GS L + G T +L T T + + + +
Sbjct: 340 RCDGRDLTSLRDIKCEVNMFKMLHGSALFQRGQTQVLCTVTFDSLESSVKSDVISTAVSG 399
Query: 54 TKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQII 113
K Y P +T K ++ R+ G RAL+ V+ I
Sbjct: 400 IKDKNFMLHYEFPPYATNEIGKVTVMNRRELGHGAL----AERALKPVIPQDFPF--TIR 453
Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP 173
+ +V++++G + A+ G +AL D + + + V K +
Sbjct: 454 VTSEVLESNGSSSMASACGGSLALMDAGVPVSNAVAGVAIGLVTKCSQG--KGDIEDYRL 511
Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
+ D+ ED D+D T+ G I +Q + + A +++++
Sbjct: 512 LTDILGIEDYYGDMDFKMAGTNKG-ITALQVDLKLPGIPIKIVVEAIQQATAAKREILQI 570
Query: 234 QKDVISN 240
++
Sbjct: 571 MNQTLAK 577
Score = 85.3 bits (209), Expect = 6e-15, Method: Composition-based stats.
Identities = 40/240 (16%), Positives = 85/240 (35%), Gaps = 25/240 (10%)
Query: 5 GRQENQMREISLTRR-VSKYAEGSCLVKFGDTHLLTTA---TLEEKVPMWIRNTKHGWIT 60
R R++ L+ ++K+A+GS +V+ GDT ++ TA T +
Sbjct: 29 NRFFLSFRKMELSSGKLAKFADGSAVVQLGDTAVMVTAVSKTKPSPSQFMPLVVDYRQKA 88
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
A G +P + R + R+I R++R + QI+ + +
Sbjct: 89 AAAGRIPTNYLRR------ELGSTDKEILTSRVIDRSIRPLFPAGYFYDTQILCNLLAVD 142
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
AI GA A G + A+ G++ G +++
Sbjct: 143 GVNDPDILAINGASAA-------------LALSDIPWNGPIGAVRVGLVDGETVINPTRK 189
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
E ++ ++ +V ++ +AE Q F + + + +I+ + ++
Sbjct: 190 EMASSTLNLVVAGAAQNQVVMLEATAEN--ILQQDFCHAIKVGVKQTQHIIQGIQQLVKE 247
>gi|269219591|ref|ZP_06163445.1| polyribonucleotide nucleotidyltransferase [Actinomyces sp. oral
taxon 848 str. F0332]
gi|269210833|gb|EEZ77173.1| polyribonucleotide nucleotidyltransferase [Actinomyces sp. oral
taxon 848 str. F0332]
Length = 765
Score = 132 bits (332), Expect = 4e-29, Method: Composition-based stats.
Identities = 44/242 (18%), Positives = 86/242 (35%), Gaps = 14/242 (5%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
+R+ GR ++R I+ V GS L + G+T +L TL E+ +
Sbjct: 338 VRMDGRTPVEIRTITAEAGVLPRVHGSALFQRGETQILGVTTLNMLKMEQQLDNLSPATS 397
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P STG + + R+ G AL S + I
Sbjct: 398 RRYIHHYNFPPYSTGETGRVGSPKRREIGHGHL----AEIALESQLPGREEFPYAIRQVS 453
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+ + ++G + ++ + ++L++ ++ + V +A G + D
Sbjct: 454 ETMGSNGSSSMGSVCASTLSLYNAGVPLKAPVAGIAMGLV-----SATIDGETKYCTLTD 508
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED+ D+D T ++ +Q + A L A+D ++ L +
Sbjct: 509 ILGAEDALGDMDFKVAGTRE-YVTALQLDTKLDGIPAAVLDAALGQARDARFAILDLITE 567
Query: 237 VI 238
I
Sbjct: 568 AI 569
Score = 77.2 bits (188), Expect = 2e-12, Method: Composition-based stats.
Identities = 44/235 (18%), Positives = 68/235 (28%), Gaps = 12/235 (5%)
Query: 12 REISLTRRV-SKYAEGSCLVKF-GDTHLLTTATLE----EKVPMWIRNTKHGWITAEYGM 65
R I + ++ A GS L DT + T E + + G
Sbjct: 21 RTIRFETGLLARQANGSALAYLDDDTTVFAATTASKAPKEHFDFFPLTVDVEERSYAAGR 80
Query: 66 LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125
+P S R GR G + R+I R LR Q++ I D
Sbjct: 81 IPGSFFRR------EGRPGTEAILAARLIDRPLRPAFKKGMRNEVQVVATVMTINPDEAY 134
Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185
AI A +A +++ + VA L G
Sbjct: 135 DVLAINAASMATSLAGLPFSGPIGGTRMALIDGQWVAFPRWSELKRATFSMAIAGRVVGD 194
Query: 186 DVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
DV V + + A A ++ A + AK I L + Q ++
Sbjct: 195 DVAIMMVEAQAPEHADAVIKAGGAKPTEAEVAAGMEAAKPVIRTLCEAQSKLVEE 249
>gi|237750416|ref|ZP_04580896.1| polyribonucleotide nucleotidyltransferase [Helicobacter bilis ATCC
43879]
gi|229373946|gb|EEO24337.1| polyribonucleotide nucleotidyltransferase [Helicobacter bilis ATCC
43879]
Length = 734
Score = 132 bits (332), Expect = 4e-29, Method: Composition-based stats.
Identities = 50/240 (20%), Positives = 87/240 (36%), Gaps = 20/240 (8%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R GR ++REIS+ + GS G T L T TL + + I
Sbjct: 353 RADGRALREIREISIESNLLPKTHGSACFTRGQTQALVTCTLGSQNDAQTQEGILTQGKS 412
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
I Y P S G A S R+ G AL+++ A I + +
Sbjct: 413 KIIFHYNFPPFSVGEAYPIGASSRRELGHGNL-------ALKAIESNVANTPHTIRLVSE 465
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
++Q++G + A++ GA +AL M + + + + + D+
Sbjct: 466 ILQSNGSSSMASVCGASLALLGADIKMHNMVAGIAMGLIYESEE--------RFAILSDI 517
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D + G +Q + S+ L A++ I ++ L ++V
Sbjct: 518 MGLEDFDGDMDFKIAGNEKG-FSALQLDIKIHGLSESILNQSLEQAREGILHILSLMRNV 576
Score = 58.7 bits (140), Expect = 6e-07, Method: Composition-based stats.
Identities = 31/224 (13%), Positives = 63/224 (28%), Gaps = 27/224 (12%)
Query: 20 VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGNRVKREAV 79
+ A+ S ++K G + LL + ++ + P +
Sbjct: 48 YATLADRSVMLKVGGSVLLCSVCVDYENPSSEDFLP--LSVQYVEKMYAIGKIPQGFLKK 105
Query: 80 SGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVALHD 139
G+ I R+I R+LR + QI I A+ A + L+
Sbjct: 106 EGKPSDNEILISRLIDRSLRPLFPKDYPYPVQITILVMSYDNKIDICQKAMNLASICLYL 165
Query: 140 CLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHI 199
KG + I + D + +D ++ ++
Sbjct: 166 SSIP-----------LTQKGILNGIRVMRRDDEFSLCDDLNDLLESKLDLFVSGINN-NV 213
Query: 200 VEVQGSA-------------ERATFSQDHFFAMLNLAKDRIADL 230
++ + S++ +NLAK I +
Sbjct: 214 SMIEMQSLKTTTQNKDSIIENANEISKNDLLEAINLAKKHIETM 257
>gi|62859375|ref|NP_001017033.1| polyribonucleotide nucleotidyltransferase 1 [Xenopus (Silurana)
tropicalis]
gi|89267966|emb|CAJ81388.1| polyribonucleotide nucleotidyltransferase 1 [Xenopus (Silurana)
tropicalis]
Length = 789
Score = 132 bits (332), Expect = 4e-29, Method: Composition-based stats.
Identities = 48/247 (19%), Positives = 87/247 (35%), Gaps = 16/247 (6%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE--------EKVPMWIRN 53
R GR +R I+ + K GS L + G T +L T T + + + +
Sbjct: 364 RCDGRDLTSLRNINCEVDLFKPLHGSALFQRGQTQVLCTVTYDSIESSMKSDHITTALSG 423
Query: 54 TKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQII 113
K Y P +T K ++ R+ G +ALR V+ I
Sbjct: 424 VKDKNFMLHYEFPPYATNEIGKVTGINRRELGHGAL----AEKALRPVIPKDFPF--TIR 477
Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP 173
+ +V++++G + A+ G +AL D + + + K + +
Sbjct: 478 VTSEVLESNGSSSMASACGGSLALMDAGVPISAAVAGVAIGLITKYSP-DKNGEIQDYRL 536
Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
+ D+ ED D+D T G I +Q + + A ++I++
Sbjct: 537 LTDILGIEDYNGDMDFKMAGTSKG-ITALQADIKIPGLPLKIVMEAIQQATVAKKEIIQI 595
Query: 234 QKDVISN 240
VIS
Sbjct: 596 MNKVISK 602
Score = 66.4 bits (160), Expect = 3e-09, Method: Composition-based stats.
Identities = 39/216 (18%), Positives = 73/216 (33%), Gaps = 19/216 (8%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRST 70
R++ ++ ++++A+G +VK GD+ ++ TA + P + E
Sbjct: 60 RKLEISSGKLARFADGCAVVKLGDSSVMVTA-VSRTKPSPSQFMPLVVDYREKSAAAGRI 118
Query: 71 GNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAI 130
R V R+I R++R + QI+ + + AI
Sbjct: 119 PTNHLRREVGITPDE--ILTSRIIDRSVRPLFPAGYFYETQILCNLLAVDGVNKPDVLAI 176
Query: 131 TGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDAN 190
GA A G V A+ G++ G I++ E S+ ++
Sbjct: 177 NGASAA-------------LALSDIPWNGPVGAVRVGLVDGEFIINPTRKEMSSSLLNLV 223
Query: 191 FVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226
IV ++ +AE Q F + L
Sbjct: 224 IAGGVQSQIVMMEAAAENVL--QQDFCHAVKLGVKH 257
>gi|227497565|ref|ZP_03927791.1| polynucleotide phosphorylase/polyadenylase [Actinomyces
urogenitalis DSM 15434]
gi|226832965|gb|EEH65348.1| polynucleotide phosphorylase/polyadenylase [Actinomyces
urogenitalis DSM 15434]
Length = 789
Score = 132 bits (332), Expect = 4e-29, Method: Composition-based stats.
Identities = 43/242 (17%), Positives = 83/242 (34%), Gaps = 14/242 (5%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
+R+ GR +R + V GS + + G+T ++ TL E+ + H
Sbjct: 344 IRMDGRGLKDIRTLGAEVEVLPRVHGSAIFERGETQIMGVTTLNMLRMEQQIDDLSPITH 403
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
+Y P STG + A R+ G RAL V+ I
Sbjct: 404 KRYMHQYIFPPFSTGETGRVGAPKRREIGHGAL----AERALVPVIPSRDEFPYAIRQVS 459
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+ + ++G T ++ + ++L + + + + + G + D
Sbjct: 460 EALGSNGSTSMGSVCASTLSLLNAGVPLRAPVAGIAMGLMHEEID-----GETKWATLTD 514
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED+ D+D T I +Q + D L A+D ++ + +
Sbjct: 515 ILGSEDAFGDMDFKVAGTREF-ITALQLDTKLDGLPSDVLAGALGQARDARFFILDVMEQ 573
Query: 237 VI 238
I
Sbjct: 574 AI 575
Score = 79.1 bits (193), Expect = 5e-13, Method: Composition-based stats.
Identities = 43/246 (17%), Positives = 72/246 (29%), Gaps = 39/246 (15%)
Query: 12 REISLTRR-VSKYAEGSCLVKF-GDTHLLTTATLE----EKVPMWIRNTKHGWITAEYGM 65
R + ++K A GS + G+T +L+ T+ ++ + G
Sbjct: 23 RVVRFETGRLAKQAAGSAMAYLDGETAVLSATTVGKHPKDQFDFFPLTVDVEERQYAAGR 82
Query: 66 LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125
+P S R GR G + R+I R LR Q++ I D
Sbjct: 83 IPGSFFRR------EGRAGTSAILACRLIDRPLRPSFVKGLRNEVQVVETVLAIHPDDAY 136
Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185
AI A ++ G VA ++ G + Y E
Sbjct: 137 DVLAINAASMSTQIAG-------------LPFAGPVAGTRLALIDGQWVAFPRYSELERA 183
Query: 186 DVDANFVMT----DSGHIVEVQGSAERATF----------SQDHFFAMLNLAKDRIADLI 231
+ I+ V+ A + ++ + L AK I L
Sbjct: 184 TFNMVVAGRVLEDGDVAIMMVEAGATENAWDLIRAGATAPTEPVVASALEAAKPHIKALC 243
Query: 232 KLQKDV 237
+ Q V
Sbjct: 244 EAQMKV 249
>gi|116063353|gb|AAI23081.1| polyribonucleotide nucleotidyltransferase 1 [Xenopus (Silurana)
tropicalis]
Length = 789
Score = 132 bits (331), Expect = 4e-29, Method: Composition-based stats.
Identities = 48/247 (19%), Positives = 87/247 (35%), Gaps = 16/247 (6%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE--------EKVPMWIRN 53
R GR +R I+ + K GS L + G T +L T T + + + +
Sbjct: 364 RCDGRDLTSLRNINCEVDLFKPLHGSALFQRGQTQVLCTVTYDSIESSMKSDHITTALSG 423
Query: 54 TKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQII 113
K Y P +T K ++ R+ G +ALR V+ I
Sbjct: 424 VKDKNFMLHYEFPPYATNEIGKVTGINRRELGHGAL----AEKALRPVIPKDFPF--TIR 477
Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP 173
+ +V++++G + A+ G +AL D + + + K + +
Sbjct: 478 VTSEVLESNGSSSMASACGGSLALMDAGVPISAAVAGVAIGLITKYSP-DKNGEIQDYRL 536
Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
+ D+ ED D+D T G I +Q + + A ++I++
Sbjct: 537 LTDILGIEDYNGDMDFKMAGTSKG-ITALQADIKIPGLPLKIVMEAIQQATVAKKEIIQI 595
Query: 234 QKDVISN 240
VIS
Sbjct: 596 MNKVISK 602
Score = 64.9 bits (156), Expect = 1e-08, Method: Composition-based stats.
Identities = 38/216 (17%), Positives = 73/216 (33%), Gaps = 19/216 (8%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRST 70
R++ ++ ++++A+G ++K GD+ ++ TA + P + E
Sbjct: 60 RKLEISSGKLARFADGCAVLKLGDSSVMVTA-VSRTKPSPSQFMPLVVDYREKSAAAGRI 118
Query: 71 GNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAI 130
R V R+I R++R + QI+ + + AI
Sbjct: 119 PTNHLRREVGITPDE--ILTSRIIDRSVRPLFPAGYFYETQILCNLLAVDGVNKPDVLAI 176
Query: 131 TGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDAN 190
GA A G V A+ G++ G I++ E S+ ++
Sbjct: 177 NGASAA-------------LALSDIPWNGPVGAVRVGLVDGEFIINPTRKEMSSSLLNLV 223
Query: 191 FVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226
IV ++ +AE Q F + L
Sbjct: 224 IAGGVQSQIVMMEAAAENVL--QQDFCHAVKLGVKH 257
>gi|167045225|gb|ABZ09885.1| putative 3' exoribonuclease family, domain 1 [uncultured marine
crenarchaeote HF4000_APKG8O8]
Length = 245
Score = 132 bits (331), Expect = 4e-29, Method: Composition-based stats.
Identities = 62/243 (25%), Positives = 100/243 (41%), Gaps = 23/243 (9%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKV-PMWIRNTKHGWI 59
+R GR+ N+ R++++ V K A+GS ++FG +L V P + N G +
Sbjct: 16 IRCDGRKVNETRKVTIKAGVLKNADGSAYIEFGGNKILAGVFGPRDVHPKHLSNPDTGIL 75
Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119
Y M P S R + R EI +++ AL V L I + +V+
Sbjct: 76 RVRYHMEPFSVDERK-----NPAPSRREIEISKVVKEALEPAVILEKFPRTVIDVFLEVL 130
Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179
QADGGTR AA+ A VAL D M D V A + G + I+D++
Sbjct: 131 QADGGTRCAALDAASVALADAGIPMRD-------------MVCACAAGKVADTLIIDVNN 177
Query: 180 GEDSTIDVDANF-VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
ED D M + G + +Q + + F + L + + ++QK +
Sbjct: 178 EEDQAGQADMPVGYMPNLGKVTLLQLDG---VLTPEEFKKCVELGIEGSKQVYEIQKQAL 234
Query: 239 SNE 241
+
Sbjct: 235 REK 237
>gi|189220135|ref|YP_001940775.1| polyribonucleotide nucleotidyltransferase (polynucleotide
phosphorylase) [Methylacidiphilum infernorum V4]
gi|189186993|gb|ACD84178.1| Polyribonucleotide nucleotidyltransferase (polynucleotide
phosphorylase) [Methylacidiphilum infernorum V4]
Length = 669
Score = 132 bits (331), Expect = 4e-29, Method: Composition-based stats.
Identities = 46/243 (18%), Positives = 82/243 (33%), Gaps = 13/243 (5%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL-----EEKVPMWIRNTKH 56
R GR +R I++ V + GS L G+T L ATL +++ + +
Sbjct: 275 RCDGRGPEDIRPIAIETSVVPRSHGSSLFCRGETQALCMATLASLNEAQELDAYGGGEQS 334
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P S G + S R+ G R+L V+ I +
Sbjct: 335 KRFLLHYFFPPFSVGEVGRITGQSRREIGHGAL----AERSLLPVIPSETDFPYAIRVSS 390
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
++++++G T A + G +AL D ++ + V + D
Sbjct: 391 EILESNGSTSMATVCGGSLALMDAGVPLKTSVAGISVGLVKGKEE---DFDWSRYCLLTD 447
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T G I Q + D + ++ ++
Sbjct: 448 ILGLEDHYGDMDFKIAGTRKG-ITGFQLDLKLRGIPLDVMAKAIFQSQKARMVILDCMDK 506
Query: 237 VIS 239
VI+
Sbjct: 507 VIN 509
Score = 75.7 bits (184), Expect = 5e-12, Method: Composition-based stats.
Identities = 40/205 (19%), Positives = 67/205 (32%), Gaps = 19/205 (9%)
Query: 38 LTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRA 97
+ TA ++ E GR + RMI R
Sbjct: 1 MVTAVSVTELKEDQDFLPLQVEYREKAAAAGRFP--GGYFRKEGRPTDKEILTSRMIDRP 58
Query: 98 LRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVL 157
LR + QI+ AI GA AL
Sbjct: 59 LRPLFPKGYFYETQILGTLLSADGQNDPDVMAINGASAALM-------------VSDIPF 105
Query: 158 KGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFF 217
G V A+ G + G I++ + E D+D +V ++ + ++GSA F ++ F
Sbjct: 106 YGPVGAVRIGQIDGRWIINPTHREREISDIDLVYVGSEHYPL-MIEGSARE--FPEEEFV 162
Query: 218 AMLNLAKDRIADLIKLQKDVISNEV 242
L A + ++I QK+ ++ +V
Sbjct: 163 KALEFAHQHVQEVIAAQKE-LAEKV 186
>gi|325959906|ref|YP_004291372.1| exosome complex exonuclease 1 [Methanobacterium sp. AL-21]
gi|325331338|gb|ADZ10400.1| exosome complex exonuclease 1 [Methanobacterium sp. AL-21]
Length = 243
Score = 132 bits (331), Expect = 4e-29, Method: Composition-based stats.
Identities = 62/241 (25%), Positives = 98/241 (40%), Gaps = 23/241 (9%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEK-VPMWIRNTKHGWIT 60
R R +++R++ + V + A+GS ++ G +L + + +
Sbjct: 19 RADNRAFDELRKMKIEAGVLERADGSAYLEIGGNKVLAAVYGPRELFVRRLMQPNKAVLR 78
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
+Y M P S +R + RS EI ++ +AL V L I + +VI+
Sbjct: 79 CKYNMAPFSVDDRKRPG-----PDRRSVEISKLASQALTPAVFLEKFPRSTIDVFIEVIE 133
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
A+GGTR A IT A VAL D M D V A + G G I+DL
Sbjct: 134 AEGGTRCAGITAASVALADAGIPMRD-------------MVVACAAGKSDGKVILDLSEV 180
Query: 181 EDSTIDVDANF-VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
ED D +M +G I +Q +++ F L+LA + + + QK I
Sbjct: 181 EDKEGQADVPIAIMPRTGEITLLQMDGN---LTEEEFEQALDLAINGCKIISEKQKAAIK 237
Query: 240 N 240
N
Sbjct: 238 N 238
>gi|72382649|ref|YP_292004.1| polynucleotide phosphorylase/polyadenylase [Prochlorococcus marinus
str. NATL2A]
gi|123620931|sp|Q46JM7|PNP_PROMT RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|72002499|gb|AAZ58301.1| RNA binding S1:KH [Prochlorococcus marinus str. NATL2A]
Length = 722
Score = 132 bits (331), Expect = 5e-29, Method: Composition-based stats.
Identities = 49/243 (20%), Positives = 86/243 (35%), Gaps = 19/243 (7%)
Query: 2 RLSGRQENQMREISLTRRVSK-YAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
R+ GR+ N++R I V GS L + G T +L+TATL + + +
Sbjct: 323 RVDGRELNEVRAIDADAAVLPNRVHGSALFQRGLTQVLSTATLGTPSDAQEMDDLNPNTD 382
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P S G R+ G RAL V+ + +
Sbjct: 383 KTYIHHYNFPPYSVGETRPMRTPGRREVGHGAL----AERALIPVLPAKDTFPYVLRVVS 438
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V+ ++G T A++ G+ +AL D ++ + + +G + D
Sbjct: 439 EVLSSNGSTSMASVCGSTLALMDAGVPLKAPVGGAAMGLIKEGKEV---------RILTD 489
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T+ G I +Q + + +N A ++ D
Sbjct: 490 IQGIEDFLGDMDFKVAGTEKG-ITALQMDMKITGLPIETIGEAINQALPARTHILGKMLD 548
Query: 237 VIS 239
I
Sbjct: 549 AIE 551
Score = 122 bits (306), Expect = 4e-26, Method: Composition-based stats.
Identities = 58/235 (24%), Positives = 91/235 (38%), Gaps = 26/235 (11%)
Query: 10 QMREISLTRR-VSKYAEGSCLVKFGDTHLLTTAT---LEEKVPMWIRNTKHGWITAEYGM 65
REI LT + A GS +++ GDT +L TAT E V + G
Sbjct: 11 DGREIKLTTGRFAPQAGGSVMIECGDTSVLVTATKSSGREGVDFLPLMCDYEERLYAAGR 70
Query: 66 LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125
+P S R GR R+ I R+I R +R + QI+ C +
Sbjct: 71 IPGSFMRR------EGRPPERATLISRLIDRPMRPLFPGWMRDDIQIVATCLSLDERVPA 124
Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185
A+TGA +A +G +AA+ G+L +++ Y E
Sbjct: 125 DVLAVTGASMATLMAGI-------------PFQGPMAAVRVGLLGDDFVLNPSYREIERG 171
Query: 186 DVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
D+D T G +V V+ A + S+ ++ + I +LI QK+V+
Sbjct: 172 DLDLVVAGTPDG-VVMVEAGANQ--LSEQDVIEAIDFGYEAITELINAQKEVLKE 223
>gi|307719046|ref|YP_003874578.1| ribonuclease PH [Spirochaeta thermophila DSM 6192]
gi|306532771|gb|ADN02305.1| ribonuclease PH [Spirochaeta thermophila DSM 6192]
Length = 226
Score = 132 bits (331), Expect = 5e-29, Method: Composition-based stats.
Identities = 100/229 (43%), Positives = 132/229 (57%), Gaps = 5/229 (2%)
Query: 11 MREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRST 70
MR +S V Y GSCLV FG+T +L A++EE VP +I GW+TAEY MLP S
Sbjct: 1 MRPVSFEAGVLAYPAGSCLVSFGNTKVLCAASIEEGVPPFIEQEGEGWLTAEYAMLPASV 60
Query: 71 GNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAI 130
KR R IQR IGR+LR+ VD + LG I++DCDV+QADGGTRTAAI
Sbjct: 61 PEGRKRRERDSRAVE----IQRFIGRSLRAAVDRTRLGPYTIVMDCDVLQADGGTRTAAI 116
Query: 131 TGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDAN 190
+G WVAL+ L + + L G VAA+S GM+ G + DLD+ D VD N
Sbjct: 117 SGGWVALYQALGKLAEMQGVEGPDYFLVGQVAAVSVGMVEGRLVADLDFAHDLAAQVDMN 176
Query: 191 FVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
VM +VEVQG+ E+ +F++D AML+LA I + + Q+ +
Sbjct: 177 VVMC-DDRLVEVQGNGEKGSFTRDELDAMLDLAAREIRIIYEAQRAALG 224
>gi|327310389|ref|YP_004337286.1| exosome complex exonuclease Rrp41 [Thermoproteus uzoniensis 768-20]
gi|326946868|gb|AEA11974.1| exosome complex exonuclease Rrp41 [Thermoproteus uzoniensis 768-20]
Length = 245
Score = 132 bits (331), Expect = 5e-29, Method: Composition-based stats.
Identities = 60/242 (24%), Positives = 105/242 (43%), Gaps = 22/242 (9%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKV-PMWIRNTKHGWIT 60
R GR +QMRE+ ++ V A+GS +V +G+T + ++ P + +
Sbjct: 14 RADGRTPDQMREVKISVGVISNADGSAMVSYGNTTAVAAVYGPREMHPRHLSLPDRAVMR 73
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
Y M P ST + E + R EI +++ AL + L +I + +++Q
Sbjct: 74 VRYHMAPFST----RDERKNPAPSRREIEISKVLREALEPAIFLEQFPRSRIDVFVEIVQ 129
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADG TR A++T A +AL D M D +S G++ G ++DL+
Sbjct: 130 ADGSTRVASLTAASLALADAGVPMRDLVIG-------------VSVGLVNGTVVLDLNGL 176
Query: 181 EDSTIDVDANF-VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
ED+ + D M + G I +Q ++S+D F L LA + ++ +
Sbjct: 177 EDNYGEGDMPVGYMPNLGRITLLQLDG---SWSRDKFAEALKLAIKGAEYVYSKAREALK 233
Query: 240 NE 241
+
Sbjct: 234 TK 235
>gi|25012192|gb|AAN71212.1| GM16802p [Drosophila melanogaster]
Length = 717
Score = 132 bits (331), Expect = 5e-29, Method: Composition-based stats.
Identities = 46/249 (18%), Positives = 86/249 (34%), Gaps = 17/249 (6%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIR-------- 52
+R GR +Q+R IS + K GS L + G T + T +L+ +
Sbjct: 300 LRCDGRDYDQLRNISCQVDMYKPLHGSALFQRGQTQVFCTVSLDSQESAMKLDSLAALDS 359
Query: 53 -NTKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQ 111
K Y P +TG + V R+ G R+L +
Sbjct: 360 GGLKAKNFMLHYEFPPYATGEVGRIGPVGRREMGHGAL----AERSLLPTLPNDYPF--T 413
Query: 112 IIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG 171
+ + +V++++G + A++ G +AL D + + + V K + +
Sbjct: 414 VRLTSEVLESNGSSSMASVCGGSLALMDAGVPVSAPAAGVAIGLVTKFE-NDDTKHLQDY 472
Query: 172 YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231
+ D+ ED D+D T G +Q + L A D + ++
Sbjct: 473 RILTDILGIEDYMGDMDMKVAGTRKG-FTAIQADLKIPGIPLKVVMESLQKATDAKSKIL 531
Query: 232 KLQKDVISN 240
+ + I
Sbjct: 532 DIMSEAIRE 540
>gi|300794376|ref|NP_001179126.1| polyribonucleotide nucleotidyltransferase 1, mitochondrial [Bos
taurus]
gi|297480320|ref|XP_002691377.1| PREDICTED: polyribonucleotide nucleotidyltransferase 1 [Bos taurus]
gi|296482678|gb|DAA24793.1| polyribonucleotide nucleotidyltransferase 1 [Bos taurus]
Length = 783
Score = 132 bits (331), Expect = 5e-29, Method: Composition-based stats.
Identities = 48/247 (19%), Positives = 85/247 (34%), Gaps = 17/247 (6%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE--------EKVPMWIRN 53
R GR +R I+ + K GS L + G T +L T T + +++ I
Sbjct: 358 RCDGRDLTSLRNINCEVDMFKILHGSSLFQRGQTQVLCTVTFDSLESNFKSDRIITAING 417
Query: 54 TKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQII 113
K Y P +T K ++ R+ G RAL V+ I
Sbjct: 418 IKDKNFMLHYEFPPYATNEIGKVTGINRRELGHGAL----AERALYPVIPKDFPF--TIR 471
Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP 173
+ +V++++G + A+ G +AL D + + V K +
Sbjct: 472 VTSEVLESNGSSSMASACGGSLALMDAGVPISSAVAGVAIGLVTKNSPD--KGEIEDYRL 529
Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
+ D+ ED D+D T G I +Q + + A +++++
Sbjct: 530 LTDILGIEDYHGDMDFKIAGTSKG-ITALQADIKLPGIPIKIVMEAIQQASVAKKEILQI 588
Query: 234 QKDVISN 240
IS
Sbjct: 589 MNKTISK 595
Score = 74.9 bits (182), Expect = 9e-12, Method: Composition-based stats.
Identities = 41/219 (18%), Positives = 77/219 (35%), Gaps = 25/219 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTA---TLEEKVPMWIRNTKHGWITAEYGMLP 67
R++ ++ ++++A+GS +V+ GDT ++ TA T + A G +P
Sbjct: 54 RKLEISSGKLARFADGSAVVQSGDTAVMVTAVSKTKPSPSQFMPLVVDYRQKAAAAGRIP 113
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
+ R + R+I R++R + QI+ + +
Sbjct: 114 TNYLRREIGS------SDKEILTSRVIDRSIRPLFPAGYFYDTQILCNLLAVDGVNEPDV 167
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
AI GA VA G + A+ GM+ G +V+ E + +
Sbjct: 168 LAINGASVA-------------LSLSDIPWNGPIGAVRIGMIDGECVVNPTRKEMANSTL 214
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226
+ IV ++ SAE Q F + +
Sbjct: 215 NLVVTGAPKSQIVMLEASAEN--ILQQDFCHAIKVGVKH 251
>gi|94676543|ref|YP_589052.1| polynucleotide phosphorylase/polyadenylase [Baumannia
cicadellinicola str. Hc (Homalodisca coagulata)]
gi|123384109|sp|Q1LSL2|PNP_BAUCH RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|94219693|gb|ABF13852.1| polynucleotide phosphorylase [Baumannia cicadellinicola str. Hc
(Homalodisca coagulata)]
Length = 697
Score = 132 bits (331), Expect = 5e-29, Method: Composition-based stats.
Identities = 43/243 (17%), Positives = 89/243 (36%), Gaps = 18/243 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKV----PMWIRNTKH 56
+R+ GR +R + + + GS L G+T L T TL + + +
Sbjct: 314 LRIDGRNHKMIRSLDMRTSILPRTHGSALFVRGETQALVTVTLGTERNAQNIDELIGERT 373
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P G + R+ G + R + +V+ + + +
Sbjct: 374 DRFLLHYNFPPYCVGEIGLVGSPKRREIGHGRL----AKRGILAVMPTANEFPYTVRVVS 429
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
++ +++G + A++ G +AL D ++ + + + + I +L
Sbjct: 430 EITESNGSSSMASVCGTSLALMDAGVPIKAAVAGVAMGLIKEDNNFVILSDILSN----- 484
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
ED D+D + +G I +Q + + + LN AKD ++ + +
Sbjct: 485 ----EDYIGDMDFKVAGSKNG-ITALQMDIKTKGITNNIIQLALNQAKDARMHILNMMEQ 539
Query: 237 VIS 239
VIS
Sbjct: 540 VIS 542
Score = 90.3 bits (222), Expect = 2e-16, Method: Composition-based stats.
Identities = 34/213 (15%), Positives = 62/213 (29%), Gaps = 19/213 (8%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGN 72
+ L V++ A + +V DT +L T ++V + E
Sbjct: 16 VILETGIVARQATAAVMVNMADTIVLVTVVGVKQVKPGQKFFPLMVNYQERTYAAGRFP- 74
Query: 73 RVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITG 132
GR I RMI R LR + L Q+I I A+ G
Sbjct: 75 -GGFFRREGRPSEGEILISRMIDRPLRPLFPDGFLNEVQVIATVVSINPQVSPDIVAMIG 133
Query: 133 AWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFV 192
A A G + +++ E +D
Sbjct: 134 VSAA-------------LSISGIPFNCPFGAARVGYINNQYVLNPTIAELVDSSLDLVVA 180
Query: 193 MTDSGHIVEVQGSAERATFSQDHFFAMLNLAKD 225
T + ++ V+ A++ S++ + + +
Sbjct: 181 STAN-AVLMVESEAKQ--LSEEQMLSAIIFGHE 210
>gi|315604465|ref|ZP_07879531.1| polyribonucleotide nucleotidyltransferase [Actinomyces sp. oral
taxon 180 str. F0310]
gi|315314171|gb|EFU62222.1| polyribonucleotide nucleotidyltransferase [Actinomyces sp. oral
taxon 180 str. F0310]
Length = 780
Score = 132 bits (331), Expect = 5e-29, Method: Composition-based stats.
Identities = 45/242 (18%), Positives = 80/242 (33%), Gaps = 14/242 (5%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKH 56
+R+ GR Q+R +S V GS L + G+T +L TL E+ +
Sbjct: 344 IRMDGRTPRQIRSLSAEVEVLPRVHGSALFQRGETQILGVTTLAMLRMEQQIDNLSPVNS 403
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
+Y P STG + + R+ G RAL V+ I
Sbjct: 404 KRYMHQYNFAPFSTGEVGRVGSPKRREIGHGDL----AERALLPVLPSREDFPYAIRQVS 459
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+ + ++G + ++ + ++L + + + G + D
Sbjct: 460 ETMGSNGSSSMGSVCASTLSLLQAGVPLRAPVAGIAMGLMT-----GEVDGQAKAVTLTD 514
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T I +Q + A L A+D ++ L
Sbjct: 515 ILGAEDGFGDMDFKVAGTRDF-ITALQLDTKLDGIDSQVLRAALAQARDARLAILDLISQ 573
Query: 237 VI 238
I
Sbjct: 574 AI 575
Score = 79.1 bits (193), Expect = 5e-13, Method: Composition-based stats.
Identities = 45/242 (18%), Positives = 74/242 (30%), Gaps = 27/242 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGD-THLLTTATLE----EKVPMWIRNTKHGWITAEYGM 65
R + ++K A GS L D T +L+ T+ ++ + G
Sbjct: 22 RTVRFETGRLAKQAAGSALAYLDDATTVLSATTVGKNPKDQFDFFPLTVDVEERQYAAGR 81
Query: 66 LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125
+P S R GR G + R+I R LR Q++ I D
Sbjct: 82 IPGSFFRR------EGRAGTEAILAARLIDRPLRPGFVKGLRNEVQVVETVLTIDPDDAY 135
Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185
AI A ++ +L+ + VA L + G T
Sbjct: 136 DVLAINAASMSTQIAGLPFTGPIGGTRLALIDDQWVAFPRWSELERSVFNIVVAGRIVTK 195
Query: 186 DVDANFVMTDSGHIVEVQGSAERATF----------SQDHFFAMLNLAKDRIADLIKLQK 235
+ T+ I+ V+ + + ++D L AK I L + Q
Sbjct: 196 E-----DGTEDVAIMMVEAGGGKNEWDLIQAGATAPTEDVVADGLEAAKPFIKALCEAQM 250
Query: 236 DV 237
V
Sbjct: 251 KV 252
>gi|195505449|ref|XP_002099509.1| GE23317 [Drosophila yakuba]
gi|194185610|gb|EDW99221.1| GE23317 [Drosophila yakuba]
Length = 771
Score = 131 bits (330), Expect = 6e-29, Method: Composition-based stats.
Identities = 46/249 (18%), Positives = 86/249 (34%), Gaps = 17/249 (6%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIR-------- 52
+R GR +Q+R IS + K GS L + G T + T +L+ +
Sbjct: 354 LRCDGRDYDQLRNISCQVDMYKPLHGSALFQRGQTQVFCTVSLDSQESAMKLDSLAALES 413
Query: 53 -NTKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQ 111
K Y P +TG + V R+ G R+L +
Sbjct: 414 GGLKAKNFMLHYEFPPYATGEVGRIGPVGRRELGHGAL----AERSLLPTLPNDYPF--T 467
Query: 112 IIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG 171
+ + +V++++G + A++ G +AL D + + + V K + +
Sbjct: 468 VRLTSEVLESNGSSSMASVCGGSLALMDAGVPVSAPAAGVAIGLVTKYE-NDDTKHLQDY 526
Query: 172 YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231
+ D+ ED D+D T G +Q + L A D + ++
Sbjct: 527 RILTDILGIEDYMGDMDMKVAGTRKG-FTAIQADLKIPGIPLKVVMESLQKATDAKSKIL 585
Query: 232 KLQKDVISN 240
+ + I
Sbjct: 586 DIMSEAIRE 594
Score = 84.9 bits (208), Expect = 8e-15, Method: Composition-based stats.
Identities = 30/225 (13%), Positives = 68/225 (30%), Gaps = 18/225 (8%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRST 70
R ++ + ++++A G+ + + GDT ++ TA + K
Sbjct: 50 RNMTFSSGRLARFANGTAVCQMGDTAVMVTAVAKTKPNPGQGFMPLVVDYRLKNAASGRI 109
Query: 71 GNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAI 130
+ + R+I R+LR + Q++ + + A AI
Sbjct: 110 P--MNFMRRELGPSEKEILSARLIDRSLRPLFHKDYRTETQLVCNMLAMDAVHSPDVLAI 167
Query: 131 TGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDAN 190
A +A G + A+ G+ G +++ E + +D
Sbjct: 168 NAASMA-------------LSLSDIPWNGPIGAVRVGLCDGEVLINPTRRELQSSQLDLV 214
Query: 191 FVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
T +V ++ + Q + +I +
Sbjct: 215 VSATKQNLVVMLE--GKGNVVLQQDLLKAIKQGTREAQFIIHEIE 257
>gi|225572738|ref|ZP_03781493.1| hypothetical protein RUMHYD_00927 [Blautia hydrogenotrophica DSM
10507]
gi|225039911|gb|EEG50157.1| hypothetical protein RUMHYD_00927 [Blautia hydrogenotrophica DSM
10507]
Length = 745
Score = 131 bits (330), Expect = 6e-29, Method: Composition-based stats.
Identities = 38/242 (15%), Positives = 72/242 (29%), Gaps = 12/242 (4%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT--LEEKVPMWIRNTKHGWI 59
R GR N++R ++ + GS + G T + T T +
Sbjct: 359 RPDGRAINEIRPLAAEVDIIPRVHGSAMFTRGQTQ-ICTVTTLAPLSEAQRLDGLDEFET 417
Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119
+ Y V S G R + RAL V+ I +
Sbjct: 418 SKRYMHHYNFPSYSVGETKPSRGPGRREIGHGALAERALVPVLPTEEEFPYAIRTVSETF 477
Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179
+++G T A+I + ++L + V + D+
Sbjct: 478 ESNGSTSQASICASTMSLMAAGVPIRKPVAGISAGLV-------TGETDDDYLVLTDIQG 530
Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI-KLQKDVI 238
ED D+D T G I +Q + ++ + K+ ++ ++ + I
Sbjct: 531 LEDFFGDMDFKVAGTHDG-ITAIQMDIKIHGLTRPIVEEAIRRTKEAREYILTEVMEKCI 589
Query: 239 SN 240
Sbjct: 590 HE 591
Score = 101 bits (250), Expect = 1e-19, Method: Composition-based stats.
Identities = 40/234 (17%), Positives = 79/234 (33%), Gaps = 27/234 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----HGWITAEYGML 66
R +++ V+K A G+ L+ +GDT +L+TAT +K I + G +
Sbjct: 59 RTLTVDIGRVAKQANGAALMHYGDTTVLSTATASDKPREGIDFFPLSVEYEEKMYAVGKI 118
Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
P R G+ + R+I R +R + + + +
Sbjct: 119 PGGFNKR------EGKASEHAVLTSRVIDRPMRPLFPKDYRNDVTLSNMVMSVDPECNPE 172
Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
A+ G+ ++ G A G+L G I++ + D
Sbjct: 173 IPAMLGSAISTC-------------ISDIPFDGPCATTQVGLLDGEFIINPSLAQKKISD 219
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
+ T ++ ++ A +D + LA D ++IK ++
Sbjct: 220 LQLTVASTRE-KVIMIEAGANE--LPEDKMIEAIYLAHDVNQEIIKFIDKIVEE 270
>gi|227830374|ref|YP_002832154.1| exosome complex exonuclease Rrp41 [Sulfolobus islandicus L.S.2.15]
gi|229579192|ref|YP_002837590.1| exosome complex exonuclease Rrp41 [Sulfolobus islandicus Y.G.57.14]
gi|229582056|ref|YP_002840455.1| exosome complex exonuclease Rrp41 [Sulfolobus islandicus Y.N.15.51]
gi|284997880|ref|YP_003419647.1| exosome complex exonuclease 1 [Sulfolobus islandicus L.D.8.5]
gi|227456822|gb|ACP35509.1| exosome complex exonuclease 1 [Sulfolobus islandicus L.S.2.15]
gi|228009906|gb|ACP45668.1| exosome complex exonuclease 1 [Sulfolobus islandicus Y.G.57.14]
gi|228012772|gb|ACP48533.1| exosome complex exonuclease 1 [Sulfolobus islandicus Y.N.15.51]
gi|284445775|gb|ADB87277.1| exosome complex exonuclease 1 [Sulfolobus islandicus L.D.8.5]
Length = 245
Score = 131 bits (330), Expect = 6e-29, Method: Composition-based stats.
Identities = 52/242 (21%), Positives = 102/242 (42%), Gaps = 23/242 (9%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKV-PMWIRNTKHGWIT 60
R+ GR+ +++R I + V K A+GS + + G+T + +++ P + +
Sbjct: 16 RIDGRKPDELRSIKIELGVLKNADGSAIFEMGNTKAIAAVYGPKEMHPRHLSLPDRAVLR 75
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
Y M P ST R + R E+ ++I AL S V + I + +++Q
Sbjct: 76 VRYHMTPFSTDERK-----NPAPSRREIELSKVIREALESAVLVELFPRTAIDVFTEILQ 130
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
AD G+R ++ A +AL D M D +A ++ G G ++DL+
Sbjct: 131 ADAGSRLVSLMAASLALADAGIPMRDL-------------IAGVAVGKADGVIVLDLNEP 177
Query: 181 EDSTIDVDANF-VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
ED + D +M + Q + + + F +L+ I + L+++ +
Sbjct: 178 EDMWGEADMPVAMMPSLNQVTLFQLNGN---MTPEEFRQAFDLSVKGINIIYNLEREALK 234
Query: 240 NE 241
++
Sbjct: 235 SK 236
>gi|149912896|ref|ZP_01901430.1| ribonuclease PH [Roseobacter sp. AzwK-3b]
gi|149813302|gb|EDM73128.1| ribonuclease PH [Roseobacter sp. AzwK-3b]
Length = 210
Score = 131 bits (330), Expect = 6e-29, Method: Composition-based stats.
Identities = 110/211 (52%), Positives = 153/211 (72%), Gaps = 2/211 (0%)
Query: 29 LVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQ 88
+++ GDTH+L TA+LEE+VP +++ T GW+TAEYGMLPRST +R++REA +G+QGGR+
Sbjct: 1 MIRVGDTHVLCTASLEERVPPFMKGTGLGWVTAEYGMLPRSTSSRMRREATAGKQGGRTV 60
Query: 89 EIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCS 148
EIQR+IGR+LR+ VD ALG RQI +DCDVIQADGGTR AAITG W+AL + +
Sbjct: 61 EIQRLIGRSLRAGVDRVALGERQITVDCDVIQADGGTRCAAITGGWIALRLAVNKLMKAG 120
Query: 149 NKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAER 208
+ V VAA+SCG+ G P++DLDY EDS VD NF+MT S ++EVQ SAE
Sbjct: 121 DVISDPLV--DPVAAVSCGIYAGQPVLDLDYPEDSEAGVDGNFIMTGSKRLIEVQMSAEG 178
Query: 209 ATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
+T+S+D +++LA+ +A+L+ QK ++
Sbjct: 179 STYSRDQMNLLMDLAEKGVAELVAAQKAAVN 209
>gi|11498104|ref|NP_069329.1| exosome complex exonuclease Rrp41 [Archaeoglobus fulgidus DSM 4304]
gi|29336576|sp|O29757|ECX1_ARCFU RecName: Full=Probable exosome complex exonuclease 1
gi|83754325|pdb|2BA0|F Chain F, Archaeal Exosome Core
gi|83754326|pdb|2BA0|E Chain E, Archaeal Exosome Core
gi|83754327|pdb|2BA0|D Chain D, Archaeal Exosome Core
gi|83754334|pdb|2BA1|D Chain D, Archaeal Exosome Core
gi|83754335|pdb|2BA1|E Chain E, Archaeal Exosome Core
gi|83754336|pdb|2BA1|F Chain F, Archaeal Exosome Core
gi|2650133|gb|AAB90744.1| ribonuclease PH (rph) [Archaeoglobus fulgidus DSM 4304]
Length = 258
Score = 131 bits (330), Expect = 7e-29, Method: Composition-based stats.
Identities = 58/243 (23%), Positives = 100/243 (41%), Gaps = 26/243 (10%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKV-PMWIRNTKHGWI 59
+RL GR+ +++R I + V K A+GSC ++ G ++ +V P +++ I
Sbjct: 16 LRLDGRKFDELRPIKIEASVLKRADGSCYLEMGKNKVIAAVFGPREVHPRHLQDPSKAII 75
Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119
Y M P S R + RS EI ++ A +V+ I I +V+
Sbjct: 76 RYRYNMAPFSVEERKRPG-----PDRRSIEISKVSKEAFEAVIMKELFPRSAIDIFVEVL 130
Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179
QAD G+RTA + A VAL D +KG + +++ G G ++D
Sbjct: 131 QADAGSRTACLNAASVALVDAGV-------------PMKGMITSVAVGKADGQLVLDPMK 177
Query: 180 GEDSTIDVDA----NFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
ED+ + D I +Q ++D + LAK + ++Q+
Sbjct: 178 EEDNFGEADMPFAFLIRNGKIESIALLQMDGR---MTRDEVKQAIELAKKGALQIYEMQR 234
Query: 236 DVI 238
+ I
Sbjct: 235 EAI 237
>gi|313905717|ref|ZP_07839077.1| polyribonucleotide nucleotidyltransferase [Eubacterium
cellulosolvens 6]
gi|313469424|gb|EFR64766.1| polyribonucleotide nucleotidyltransferase [Eubacterium
cellulosolvens 6]
Length = 715
Score = 131 bits (330), Expect = 7e-29, Method: Composition-based stats.
Identities = 42/244 (17%), Positives = 77/244 (31%), Gaps = 18/244 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL-----EEKVPMWIRNTKH 56
R GR Q+R ++ V + GS + G T + TL +KV
Sbjct: 325 RPDGRAVRQIRPLAAEVDVIPHVHGSAMFTRGQTQICDVITLAPLSEAQKVEGLDPFITK 384
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
+Y S G R+ G RAL V+ I
Sbjct: 385 KRYMHQYNFPSYSVGETKPSRGPGRREIGHGAL----AERALLPVLPTEEEFPYAIRAVS 440
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+ +++G T A++ + +AL ++ V + D
Sbjct: 441 ETFESNGSTSQASVCASSMALMAAGVPIKKPVAGISCGLV-------TGDTDDDYLVLTD 493
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI-KLQK 235
+ ED D+D T G I +Q + ++ ++ KD ++ ++ +
Sbjct: 494 IQGLEDFFGDMDFKVAGTHDG-ITAIQMDIKIHGLTRQIVEEAISRCKDAREYILTEVME 552
Query: 236 DVIS 239
I+
Sbjct: 553 KAIA 556
Score = 92.2 bits (227), Expect = 5e-17, Method: Composition-based stats.
Identities = 39/234 (16%), Positives = 76/234 (32%), Gaps = 27/234 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEK----VPMWIRNTKHGWITAEYGML 66
R +S+ V K A G + +GDT LL TAT ++ V + + + G
Sbjct: 25 RTLSVDIGRVGKQANGCAFMHYGDTTLLCTATASKQPREGVDFFPLSVEFEEKMYAVGKF 84
Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
P R G+ + R+I R +R + + +
Sbjct: 85 PGGFNKR------EGKASEHAVLTSRVIDRPMRPLFPKDYRNDVTLNNMVMSVDPACDPE 138
Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
A+ G+ +A G AA GM+ G +++ Y + +
Sbjct: 139 VVAMLGSSLAT-------------AISDIPFDGPCAATQIGMIDGEFVINPGYEQKAEST 185
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
+ T ++ ++ AE + + LA + +I +++
Sbjct: 186 LALTVASTRE-KVIMIEAGAEE--IPEAKMIEAIYLADETNKKVIAFFDQIVAE 236
>gi|289449845|ref|YP_003475189.1| polyribonucleotide nucleotidyltransferase [Clostridiales genomosp.
BVAB3 str. UPII9-5]
gi|289184392|gb|ADC90817.1| polyribonucleotide nucleotidyltransferase [Clostridiales genomosp.
BVAB3 str. UPII9-5]
Length = 745
Score = 131 bits (329), Expect = 7e-29, Method: Composition-based stats.
Identities = 45/235 (19%), Positives = 80/235 (34%), Gaps = 15/235 (6%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEE----KVPMWIRNTKHG 57
R+ GR +++R +S + GS L + G T +LT TL + + N K
Sbjct: 312 RVDGRGIDEIRPLSCDAGILPMVHGSGLFQRGQTQVLTICTLGPLSSAQTLDGLDNEKEK 371
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y M STG + R+ G R+L V+ I +
Sbjct: 372 RYMHHYNMPGYSTGEAKPNRSPGRREIGHGAL----AERSLVPVLPSEEEFPYAIRTVSE 427
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
++ ++G T ++ + +AL D ++ ++ +D+
Sbjct: 428 IMMSNGSTSQGSVCASTLALMDAGVPIKRPVAGISCGLLVNEE------NDEDFLVFMDI 481
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
ED D+D T G I +Q + S D L + + +I
Sbjct: 482 QGIEDFFGDMDFKVAGTTEG-ITSIQVDIKVDGLSYDVIRQALAITRKGRLQIIN 535
Score = 102 bits (254), Expect = 4e-20, Method: Composition-based stats.
Identities = 38/234 (16%), Positives = 83/234 (35%), Gaps = 27/234 (11%)
Query: 12 REISLTRRVSKY-AEGSCLVKFGDTHLLTTATLEEKVPMWIRNT----KHGWITAEYGML 66
R++ + A GSCL+++G+T +L+TAT ++ I + G +
Sbjct: 12 RDLIVETGKLAQFANGSCLIRYGNTVVLSTATASKQPRPGIDFFPLSVDYEEKMYAIGKI 71
Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
PR R GR ++ R+I R +R + + + +
Sbjct: 72 PRGFIKR------EGRPSEKAILTSRVIDRPMRPLFPKDLRNDVAVNNLVLAVDQNASPE 125
Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
AA+ G+ +A+ +G ++ + G++ G I++ + +
Sbjct: 126 IAAMIGSSIAV-------------AISDIPWRGPISGVQLGLIDGQVIINPNEEQRKQSQ 172
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
+ T+ I ++ A+ +D L I + K +++
Sbjct: 173 MAVTLAGTEE-KICMIEAGADEVP--EDVMMNALLAGHQEIQKTCRFIKSIVAE 223
>gi|315637153|ref|ZP_07892375.1| polyribonucleotide nucleotidyltransferase [Arcobacter butzleri
JV22]
gi|315478520|gb|EFU69231.1| polyribonucleotide nucleotidyltransferase [Arcobacter butzleri
JV22]
Length = 725
Score = 131 bits (329), Expect = 8e-29, Method: Composition-based stats.
Identities = 44/243 (18%), Positives = 82/243 (33%), Gaps = 22/243 (9%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLT--TATLEEKVPMW----IRNT 54
+R GR +R IS+ + SCL G+T L T + M+ ++T
Sbjct: 334 VRADGRGLKDVRPISIETNILPSTHSSCLFTRGETQALVIGTIAGPKDGQMYEVLTDKST 393
Query: 55 KHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIII 114
Y S G V R+ G ++ + + + + +
Sbjct: 394 SMENFMVHYNFPGFSVGEAKPMFGVGRRELGHGNLAKKALEATI------DKDYNETVRL 447
Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPI 174
++++++G + A + G +AL + D + V++ AI ++
Sbjct: 448 VSEILESNGSSSMATVCGGSLALKAAGIPISDLVAGVAMGMVVENDKYAILTDIM----- 502
Query: 175 VDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
ED D+D T G I +Q + L AK+ ++ L
Sbjct: 503 ----GLEDHDGDMDFKVAGTSKG-ITALQMDIKLGGIELSVLKEALLQAKEGRTHILSLM 557
Query: 235 KDV 237
KD
Sbjct: 558 KDA 560
Score = 72.6 bits (176), Expect = 5e-11, Method: Composition-based stats.
Identities = 33/232 (14%), Positives = 71/232 (30%), Gaps = 42/232 (18%)
Query: 20 VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----HGWITAEYGMLPRSTGNRVK 75
V+K + G+ L K G+ +L T E P+ T + T LP R
Sbjct: 21 VAKQSNGAVLAKIGNAVVLATVVSEFDNPVSEDFTPLTVQYIEKTYAAAKLPGGFIKR-- 78
Query: 76 REAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWV 135
G+ R+I R+LR + + I + + +T ++ A
Sbjct: 79 ----EGKPSDFETLTSRVIDRSLRPLFPKGYVYPTTITVMVLSADKNVDLQTLSLNAANA 134
Query: 136 ALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTD 195
AL+ + +K V + G + +++ + +D +
Sbjct: 135 ALYT-------------SNLPIKKSVCGVRVGKIENTLVINPTNEQLENSTLDLYVAGSK 181
Query: 196 SGHIVEVQG-----------SAER-------ATFSQDHFFAMLNLAKDRIAD 229
++ ++ E +D + A++ + +
Sbjct: 182 D-ELLMIEMKTISSSELVEIDIEAFTKIHNTNEMDEDALVEAIAFAQNALKE 232
>gi|157737429|ref|YP_001490112.1| polynucleotide phosphorylase/polyadenylase [Arcobacter butzleri
RM4018]
gi|187470965|sp|A8EU19|PNP_ARCB4 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|157699283|gb|ABV67443.1| polyribonucleotide nucleotidyltransferase [Arcobacter butzleri
RM4018]
Length = 725
Score = 131 bits (329), Expect = 8e-29, Method: Composition-based stats.
Identities = 44/243 (18%), Positives = 82/243 (33%), Gaps = 22/243 (9%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLT--TATLEEKVPMW----IRNT 54
+R GR +R IS+ + SCL G+T L T + M+ ++T
Sbjct: 334 VRADGRGLKDVRPISIETNILPSTHSSCLFTRGETQALVIGTIAGPKDGQMYEVLTDKST 393
Query: 55 KHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIII 114
Y S G V R+ G ++ + + + + +
Sbjct: 394 SMENFMVHYNFPGFSVGEAKPMFGVGRRELGHGNLAKKALEATI------DKDYNETVRL 447
Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPI 174
++++++G + A + G +AL + D + V++ AI ++
Sbjct: 448 VSEILESNGSSSMATVCGGSLALKAAGIPISDLVAGVAMGMVVENDKYAILTDIM----- 502
Query: 175 VDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
ED D+D T G I +Q + L AK+ ++ L
Sbjct: 503 ----GLEDHDGDMDFKVAGTSKG-ITALQMDIKLGGIELSVLKEALLQAKEGRTHILSLM 557
Query: 235 KDV 237
KD
Sbjct: 558 KDA 560
Score = 71.4 bits (173), Expect = 9e-11, Method: Composition-based stats.
Identities = 33/232 (14%), Positives = 71/232 (30%), Gaps = 42/232 (18%)
Query: 20 VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----HGWITAEYGMLPRSTGNRVK 75
V+K + G+ L K G+ +L T E P+ T + T LP R
Sbjct: 21 VAKQSNGAVLAKIGNAVVLATVVSEFDNPVSEDFTPLTVQYIEKTYAAAKLPGGFIKR-- 78
Query: 76 REAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWV 135
G+ R+I R+LR + + I + + +T ++ A
Sbjct: 79 ----EGKPSDFETLTSRVIDRSLRPLFPKGYVYPTTITVMVLSADKNVDLQTLSLNAANA 134
Query: 136 ALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTD 195
AL+ + +K V + G + +++ + +D +
Sbjct: 135 ALYT-------------SNLPIKKSVCGVRVGKIENTLVINPTNEQLENSTLDLYVAGSK 181
Query: 196 SGHIVEVQG-----------SAER-------ATFSQDHFFAMLNLAKDRIAD 229
++ ++ E +D + A++ + +
Sbjct: 182 E-ELLMIEMKTISSSELVEIDIEAFTKIHNTNEMDEDALVEAIAFAQNALKE 232
>gi|332141240|ref|YP_004426978.1| Polynucleotide phosphorylase [Alteromonas macleodii str. 'Deep
ecotype']
gi|327551262|gb|AEA97980.1| Polynucleotide phosphorylase [Alteromonas macleodii str. 'Deep
ecotype']
Length = 382
Score = 131 bits (329), Expect = 8e-29, Method: Composition-based stats.
Identities = 35/231 (15%), Positives = 80/231 (34%), Gaps = 10/231 (4%)
Query: 11 MREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRST 70
+R + + + GS L G+T + ATL + + + G + + +
Sbjct: 2 IRALDVATGILPRTHGSALFTRGETQAIMAATLGTERDAQMIDELQGKRDSRFMLHYNFP 61
Query: 71 GNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAI 130
V + G R R+ R +++V+ + + ++ +++G + A++
Sbjct: 62 PYCVGETGMIGSPKRREIGHGRLAKRGIQAVMPSEEEFPYVVRVVSEITESNGSSSMASV 121
Query: 131 TGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDAN 190
G +AL D ++ + V + + ED D+D
Sbjct: 122 CGTSLALMDAGVPIKASVAGIAMGLVKSDDNFVVLSD---------ILGDEDHLGDMDFK 172
Query: 191 FVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
T G I +Q + +++ L AK+ ++ + + I
Sbjct: 173 VAGTTDG-ITALQMDIKIEGITKEIMQIALKQAKEARLHILNVMDEAIGGH 222
>gi|194220716|ref|XP_001496138.2| PREDICTED: similar to Polyribonucleotide nucleotidyltransferase 1,
mitochondrial precursor (PNPase 1) (Polynucleotide
phosphorylase-like protein) (PNPase old-35) (3-5 RNA
exonuclease OLD35) [Equus caballus]
Length = 784
Score = 131 bits (329), Expect = 8e-29, Method: Composition-based stats.
Identities = 47/247 (19%), Positives = 86/247 (34%), Gaps = 17/247 (6%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE--------EKVPMWIRN 53
R GR +R I+ + K GS L + G T +L T T + +++ I
Sbjct: 358 RCDGRDLTSLRNINCEVDMFKILHGSALFQRGQTQVLCTVTFDSLESSIKSDRIITAING 417
Query: 54 TKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQII 113
Y P +T K V+ R+ G +AL V+ I
Sbjct: 418 VNDKNFMLHYEFPPYATNEIGKVTGVNRRELGHGAL----AEKALYPVIPKDFPF--TIR 471
Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP 173
+ +V++++G + A+ G +AL D + + V K + +
Sbjct: 472 VTSEVLESNGSSSMASACGGSLALMDAGVPISTAVAGVAIGLVTKNNPD--KGEIEDYRL 529
Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
+ D+ ED D+D T+ G I +Q + + A +++++
Sbjct: 530 LTDILGIEDYNGDMDFKIAGTNKG-ITALQADIKLPGIPIKIVMEAIQQASVAKKEILQI 588
Query: 234 QKDVISN 240
IS
Sbjct: 589 MNKTISK 595
Score = 73.7 bits (179), Expect = 2e-11, Method: Composition-based stats.
Identities = 42/218 (19%), Positives = 78/218 (35%), Gaps = 25/218 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTA---TLEEKVPMWIRNTKHGWITAEYGMLP 67
R++ ++ ++++A+GS +V+ GDT ++ TA T + A G +P
Sbjct: 54 RKLEISSGKLARFADGSAVVQSGDTAVMVTAVSKTKPSPSQFLPLVVDYRQKAAAAGRIP 113
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
+ R + R+I R++R + Q++ + +
Sbjct: 114 TNYLRREIGS------SDKEILTSRVIDRSIRPLFPAGYFYDTQVLCNLLAVDGVNEPDV 167
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
AI GA VA G V A+ GM+ G +V+ E S+ +
Sbjct: 168 LAINGASVA-------------LSLSDIPWNGPVGAVRIGMIDGECVVNPTRKEMSSSTL 214
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKD 225
+ IV ++ SAE Q F + +
Sbjct: 215 NLVVAGAPKSQIVMLEASAEN--ILQQDFCHAIKVGVK 250
>gi|294056196|ref|YP_003549854.1| polyribonucleotide nucleotidyltransferase [Coraliomargarita
akajimensis DSM 45221]
gi|293615529|gb|ADE55684.1| polyribonucleotide nucleotidyltransferase [Coraliomargarita
akajimensis DSM 45221]
Length = 724
Score = 131 bits (329), Expect = 8e-29, Method: Composition-based stats.
Identities = 45/244 (18%), Positives = 77/244 (31%), Gaps = 13/244 (5%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIR-----NTKH 56
R+ GR +R IS V GS + G+T L +TL +
Sbjct: 315 RVDGRGAKDLRAISCDTGVLPRVHGSAVFNRGETQALVISTLGTSRDVQDIDGLTGGATS 374
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P STG + R+ G R+L ++ I +
Sbjct: 375 KSFILHYNFPPFSTGEAGRFGFTGRREIGHGAL----AERSLLPILPPEDEFPYAIRVVS 430
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V+ ++G T A+I G ++L D + V + + + D
Sbjct: 431 EVMSSNGSTSMASICGGCLSLMDAGVPITAPCAGISTGLVTEKDADG---KITKHVILTD 487
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T G I Q + D + +D +I + +
Sbjct: 488 ILGAEDHFGDMDFKIAGTPEG-ITGFQLDLKIQGLPFDITLEAIKQNRDARMKIIAIMAE 546
Query: 237 VISN 240
+
Sbjct: 547 HLPE 550
Score = 91.4 bits (225), Expect = 1e-16, Method: Composition-based stats.
Identities = 37/224 (16%), Positives = 73/224 (32%), Gaps = 19/224 (8%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGN 72
I ++ ++ A G+ ++ G+T L +AT + E
Sbjct: 14 IEISTGTLAGLASGAVTIRQGETELFVSATAASALRPGQDFFPLTVDYREKFSAGGKFP- 72
Query: 73 RVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITG 132
G+ + R+ R LR + + Q+I +
Sbjct: 73 -GGYFKREGKPSEKEILTSRLCDRPLRPLFPKGFMNEVQVIGLLLATDQTHEPDVLMVNA 131
Query: 133 AWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFV 192
A A G V + G + G + + + E D+D +V
Sbjct: 132 ASAAT-------------LISDIPWNGPVGCVRVGQIDGEFVTNPTHDEMLDSDLDLIYV 178
Query: 193 MTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+++ ++ ++GSAE S + F+ L + I +I QK+
Sbjct: 179 GSET-EMMMIEGSAE--FISDERFYEALEYGQQAIQPIIAAQKE 219
>gi|284161628|ref|YP_003400251.1| exosome complex exonuclease 1 [Archaeoglobus profundus DSM 5631]
gi|284011625|gb|ADB57578.1| exosome complex exonuclease 1 [Archaeoglobus profundus DSM 5631]
Length = 244
Score = 131 bits (329), Expect = 8e-29, Method: Composition-based stats.
Identities = 59/245 (24%), Positives = 96/245 (39%), Gaps = 26/245 (10%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKV-PMWIRNTKHGWIT 60
RL GR ++R I + V A+GSC ++ G ++ +V P + + I
Sbjct: 12 RLDGRDFEELRPIKIEAGVLNRADGSCYLEMGGNKVVAAVYGPREVHPKHLEDPSKAIIR 71
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
Y M P S R + RS EI ++ AL V+ I I +V+Q
Sbjct: 72 YRYSMAPFSVEERKRPG-----PDRRSIEISKVSREALEPVIMKELFPRSAIDIFVEVLQ 126
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
AD G+RTA + A VAL D +KG V +++ + G ++D
Sbjct: 127 ADAGSRTACLNAASVALIDAGI-------------PMKGMVTSVAVAKVDGILVLDPMKE 173
Query: 181 EDSTIDVD----ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
ED+ + D I +Q S++ L +AK + +LQ++
Sbjct: 174 EDNYGEADIPFAFLIRNGKIESITLLQMDGR---VSKEELKKALEMAKKGAMQIYQLQRE 230
Query: 237 VISNE 241
I +
Sbjct: 231 AILKK 235
>gi|15897636|ref|NP_342241.1| exosome complex exonuclease Rrp41 [Sulfolobus solfataricus P2]
gi|29337007|sp|Q9UXC2|ECX1_SULSO RecName: Full=Probable exosome complex exonuclease 1
gi|71042717|pdb|2BR2|B Chain B, Rnase Ph Core Of The Archaeal Exosome
gi|71042719|pdb|2BR2|D Chain D, Rnase Ph Core Of The Archaeal Exosome
gi|71042721|pdb|2BR2|F Chain F, Rnase Ph Core Of The Archaeal Exosome
gi|71042723|pdb|2BR2|H Chain H, Rnase Ph Core Of The Archaeal Exosome
gi|71042725|pdb|2BR2|J Chain J, Rnase Ph Core Of The Archaeal Exosome
gi|71042727|pdb|2BR2|L Chain L, Rnase Ph Core Of The Archaeal Exosome
gi|71042729|pdb|2BR2|N Chain N, Rnase Ph Core Of The Archaeal Exosome
gi|71042731|pdb|2BR2|P Chain P, Rnase Ph Core Of The Archaeal Exosome
gi|71042733|pdb|2BR2|R Chain R, Rnase Ph Core Of The Archaeal Exosome
gi|71042735|pdb|2BR2|T Chain T, Rnase Ph Core Of The Archaeal Exosome
gi|71042737|pdb|2BR2|V Chain V, Rnase Ph Core Of The Archaeal Exosome
gi|71042739|pdb|2BR2|X Chain X, Rnase Ph Core Of The Archaeal Exosome
gi|83754539|pdb|2C37|B Chain B, Rnase Ph Core Of The Archaeal Exosome In Complex With U8
Rna
gi|83754541|pdb|2C37|D Chain D, Rnase Ph Core Of The Archaeal Exosome In Complex With U8
Rna
gi|83754543|pdb|2C37|F Chain F, Rnase Ph Core Of The Archaeal Exosome In Complex With U8
Rna
gi|83754545|pdb|2C37|H Chain H, Rnase Ph Core Of The Archaeal Exosome In Complex With U8
Rna
gi|83754547|pdb|2C37|J Chain J, Rnase Ph Core Of The Archaeal Exosome In Complex With U8
Rna
gi|83754549|pdb|2C37|L Chain L, Rnase Ph Core Of The Archaeal Exosome In Complex With U8
Rna
gi|83754551|pdb|2C37|N Chain N, Rnase Ph Core Of The Archaeal Exosome In Complex With U8
Rna
gi|83754553|pdb|2C37|P Chain P, Rnase Ph Core Of The Archaeal Exosome In Complex With U8
Rna
gi|83754555|pdb|2C37|R Chain R, Rnase Ph Core Of The Archaeal Exosome In Complex With U8
Rna
gi|83754557|pdb|2C37|T Chain T, Rnase Ph Core Of The Archaeal Exosome In Complex With U8
Rna
gi|83754559|pdb|2C37|V Chain V, Rnase Ph Core Of The Archaeal Exosome In Complex With U8
Rna
gi|83754561|pdb|2C37|X Chain X, Rnase Ph Core Of The Archaeal Exosome In Complex With U8
Rna
gi|83754563|pdb|2C38|B Chain B, Rnase Ph Core Of The Archaeal Exosome In Complex With A5
Rna
gi|83754565|pdb|2C38|D Chain D, Rnase Ph Core Of The Archaeal Exosome In Complex With A5
Rna
gi|83754567|pdb|2C38|F Chain F, Rnase Ph Core Of The Archaeal Exosome In Complex With A5
Rna
gi|83754569|pdb|2C38|H Chain H, Rnase Ph Core Of The Archaeal Exosome In Complex With A5
Rna
gi|83754571|pdb|2C38|J Chain J, Rnase Ph Core Of The Archaeal Exosome In Complex With A5
Rna
gi|83754573|pdb|2C38|L Chain L, Rnase Ph Core Of The Archaeal Exosome In Complex With A5
Rna
gi|83754575|pdb|2C38|N Chain N, Rnase Ph Core Of The Archaeal Exosome In Complex With A5
Rna
gi|83754577|pdb|2C38|P Chain P, Rnase Ph Core Of The Archaeal Exosome In Complex With A5
Rna
gi|83754579|pdb|2C38|R Chain R, Rnase Ph Core Of The Archaeal Exosome In Complex With A5
Rna
gi|83754581|pdb|2C38|T Chain T, Rnase Ph Core Of The Archaeal Exosome In Complex With A5
Rna
gi|83754583|pdb|2C38|V Chain V, Rnase Ph Core Of The Archaeal Exosome In Complex With A5
Rna
gi|83754585|pdb|2C38|X Chain X, Rnase Ph Core Of The Archaeal Exosome In Complex With A5
Rna
gi|83754587|pdb|2C39|B Chain B, Rnase Ph Core Of The Archaeal Exosome In Complex With Adp
gi|83754589|pdb|2C39|D Chain D, Rnase Ph Core Of The Archaeal Exosome In Complex With Adp
gi|83754591|pdb|2C39|F Chain F, Rnase Ph Core Of The Archaeal Exosome In Complex With Adp
gi|83754593|pdb|2C39|H Chain H, Rnase Ph Core Of The Archaeal Exosome In Complex With Adp
gi|83754595|pdb|2C39|J Chain J, Rnase Ph Core Of The Archaeal Exosome In Complex With Adp
gi|83754597|pdb|2C39|L Chain L, Rnase Ph Core Of The Archaeal Exosome In Complex With Adp
gi|83754599|pdb|2C39|N Chain N, Rnase Ph Core Of The Archaeal Exosome In Complex With Adp
gi|83754601|pdb|2C39|P Chain P, Rnase Ph Core Of The Archaeal Exosome In Complex With Adp
gi|83754603|pdb|2C39|R Chain R, Rnase Ph Core Of The Archaeal Exosome In Complex With Adp
gi|83754605|pdb|2C39|T Chain T, Rnase Ph Core Of The Archaeal Exosome In Complex With Adp
gi|83754607|pdb|2C39|V Chain V, Rnase Ph Core Of The Archaeal Exosome In Complex With Adp
gi|83754609|pdb|2C39|X Chain X, Rnase Ph Core Of The Archaeal Exosome In Complex With Adp
gi|6015742|emb|CAB57569.1| ribonuclease PH [Sulfolobus solfataricus P2]
gi|13813903|gb|AAK41031.1| Ribonuclease PH (rph) [Sulfolobus solfataricus P2]
Length = 248
Score = 131 bits (329), Expect = 8e-29, Method: Composition-based stats.
Identities = 55/242 (22%), Positives = 102/242 (42%), Gaps = 23/242 (9%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKV-PMWIRNTKHGWIT 60
R GR+ +++R I + V K A+GS + + G+T + +++ P + +
Sbjct: 19 RTDGRKPDELRSIKIELGVLKNADGSAIFEMGNTKAIAAVYGPKEMHPRHLSLPDRAVLR 78
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
Y M P ST R + R E+ ++I AL S V + I + +++Q
Sbjct: 79 VRYHMTPFSTDERK-----NPAPSRREIELSKVIREALESAVLVELFPRTAIDVFTEILQ 133
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
AD G+R ++ A +AL D M D +A ++ G G I+DL+
Sbjct: 134 ADAGSRLVSLMAASLALADAGIPMRDL-------------IAGVAVGKADGVIILDLNET 180
Query: 181 EDSTIDVDANF-VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
ED + D +M + Q + + + D F +LA I + L+++ +
Sbjct: 181 EDMWGEADMPIAMMPSLNQVTLFQLNG---SMTPDEFRQAFDLAVKGINIIYNLEREALK 237
Query: 240 NE 241
++
Sbjct: 238 SK 239
>gi|240104093|ref|YP_002960402.1| exosome complex exonuclease Rrp41 [Thermococcus gammatolerans EJ3]
gi|259645401|sp|C5A2B9|ECX1_THEGJ RecName: Full=Probable exosome complex exonuclease 1
gi|239911647|gb|ACS34538.1| 3'-5' exoribonuclease, exosome complex exonuclease 1, Rrp41p-like
protein (Rrp41p) [Thermococcus gammatolerans EJ3]
Length = 249
Score = 131 bits (329), Expect = 8e-29, Method: Composition-based stats.
Identities = 60/242 (24%), Positives = 104/242 (42%), Gaps = 23/242 (9%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKV-PMWIRNTKHGWIT 60
R+ GR++ ++R+I + V K A+GS +++G +L ++ P ++ +
Sbjct: 17 RIDGRRKYELRKIHMEVGVLKNADGSAYIEWGKNKILAAVYGPREIHPKHLQRPDTAVLR 76
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
Y M P S R K RS EI ++I AL + L + + +V+Q
Sbjct: 77 VRYNMAPFSVEERKKPG-----PDRRSVEISKVIRGALEPALILEMFPRTVVDVFIEVLQ 131
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
AD GTR A IT A +AL D M D VAA + G + G ++DL+
Sbjct: 132 ADAGTRVAGITAASLALADAGVPMRDL-------------VAACAAGKIDGEIVLDLNKD 178
Query: 181 EDSTIDVDANF-VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
ED+ + D +M I +Q +++ F + LA + + Q++ +
Sbjct: 179 EDNYGEADVPVAIMPLKNDITLLQMDGY---LTKEEFIEAVKLAIKGAKAVYQKQREALK 235
Query: 240 NE 241
+
Sbjct: 236 EK 237
>gi|327262753|ref|XP_003216188.1| PREDICTED: polyribonucleotide nucleotidyltransferase 1,
mitochondrial-like [Anolis carolinensis]
Length = 765
Score = 131 bits (329), Expect = 9e-29, Method: Composition-based stats.
Identities = 48/247 (19%), Positives = 87/247 (35%), Gaps = 16/247 (6%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT---LEEKVPMWI-----RN 53
R GR +R IS + K GS L + G T +L T T LE V +
Sbjct: 338 RCDGRDLTSLRNISCEVDMFKTLHGSALFQRGQTQVLCTVTFDSLESSVKSDLITTAISG 397
Query: 54 TKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQII 113
K Y P +T K +++ R+ G +AL+ V+ I
Sbjct: 398 IKEKNFMLHYEFPPYATNEIGKISSMNRRELGHGAL----AEKALKPVIPNEFPF--TIR 451
Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP 173
+ +V++++G + A+ G +AL D + + V + + +
Sbjct: 452 VTSEVLESNGSSSMASACGGSLALMDAGVPISSAVAGVAVGLVTS-PNSEKNGDIENYRL 510
Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
+ D+ ED D+D T+ G I +Q + + A +++++
Sbjct: 511 LTDILGIEDYNGDMDFKMAGTNKG-ITALQADIKLPGIPLKIVMEAIQQATVAKREILQI 569
Query: 234 QKDVISN 240
I
Sbjct: 570 MNKTIGK 576
Score = 74.1 bits (180), Expect = 2e-11, Method: Composition-based stats.
Identities = 39/219 (17%), Positives = 77/219 (35%), Gaps = 25/219 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTA---TLEEKVPMWIRNTKHGWITAEYGMLP 67
R++ ++ ++++A+GS +V+ GDT ++ TA T + A G +P
Sbjct: 34 RKLEISSGKLARFADGSAVVQLGDTSVMVTAVSKTKPSPSQFMPLVVDYRQKAAAAGRIP 93
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
+ R + R+I R++R + QI+ + +
Sbjct: 94 TNYLRR------ELGSTDKEILTSRVIDRSIRPLFPAGYYYDTQILCNLLAVDGVNDPEV 147
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
AI GA A G + A+ G++ G +V+ E S+ +
Sbjct: 148 LAINGASAA-------------LTLSDIPWNGPIGAVRVGLIDGEVVVNPTRKEMSSSTL 194
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226
D +V ++ +AE Q F + +
Sbjct: 195 DLIVSSAPRSQVVMLEAAAENVL--QQDFCHAIKVGVKH 231
>gi|227872010|ref|ZP_03990395.1| polyribonucleotide nucleotidyltransferase [Oribacterium sinus
F0268]
gi|227842153|gb|EEJ52398.1| polyribonucleotide nucleotidyltransferase [Oribacterium sinus
F0268]
Length = 695
Score = 131 bits (329), Expect = 9e-29, Method: Composition-based stats.
Identities = 39/245 (15%), Positives = 80/245 (32%), Gaps = 18/245 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE-----EKVPMWIRNTKH 56
R GR +++R++ + GS + K G T ++ TL +KV
Sbjct: 306 RPDGRAIDEIRKLEAEVDLLPRVHGSAMFKRGQTQIMNITTLAPLSEVQKVEGLNEFETE 365
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
+Y S G R+ G +AL V+ I
Sbjct: 366 KRYLHQYNFPGYSVGEAKASRGPGRREIGHGAL----AEKALIPVLPSVEEFPYAIRSVS 421
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+ ++++G T A+ + ++L ++ V + D
Sbjct: 422 ETMESNGSTSMASTCASCMSLMAAGVPIKKPVAGISCGLV-------TGDSDDEYLVLTD 474
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK-LQK 235
+ ED D+D T+ G I +Q + ++ + A++ ++ + K
Sbjct: 475 IQGLEDFFGDMDFKVTGTEDG-ITAIQMDIKIHGLTRPIVEEAIRRAREARLFIMNGVMK 533
Query: 236 DVISN 240
+ I+
Sbjct: 534 EAIAE 538
Score = 79.1 bits (193), Expect = 5e-13, Method: Composition-based stats.
Identities = 38/234 (16%), Positives = 77/234 (32%), Gaps = 27/234 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKHGWITAEYGML 66
R +++ V + G+ L+ +GDT +L+T T + + + + ++ G
Sbjct: 6 RTLTVDVDRVCAQSNGAALMHYGDTTVLSTCTASAKPRDGIDFFPLSVEYEEKMYSVGKF 65
Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
P R GR + R+I R +R + + + D
Sbjct: 66 PGGFKKR------EGRASDNAILTARVIDRPMRPLFPKDYRNDVLLNNLVLSVDQDASPE 119
Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
A+ G+ ++ G A GM+ G +V+ GE + D
Sbjct: 120 LLAMLGSSLSTC-------------LSDVPFDGPCATTQIGMVGGEFVVNPGNGEKAVSD 166
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
+ T ++ ++ A + + LA D +I + +I
Sbjct: 167 LLLTVASTKE-KVIMIEAGANE--LPEAKMIEAIYLAHDVNQQIIGFFESIIEE 217
>gi|315452709|ref|YP_004072979.1| polyribonucleotide nucleotidyltransferase [Helicobacter felis ATCC
49179]
gi|315131761|emb|CBY82389.1| polyribonucleotide nucleotidyltransferase [Helicobacter felis ATCC
49179]
Length = 679
Score = 131 bits (329), Expect = 9e-29, Method: Composition-based stats.
Identities = 43/242 (17%), Positives = 86/242 (35%), Gaps = 21/242 (8%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R GR +R IS+ + + GS L G T L T+ + K+ +
Sbjct: 307 RPDGRGFETIRPISIETNLLPHCHGSALFTRGHTQALVVCTVGGPNDAKLQENLDGLHKE 366
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G A R+ G + + ++ + I + +
Sbjct: 367 RFMFHYNFPPFSVGEATPLSAPGRREIGHGNLAKCALQGSILES-------DQTIRLVSE 419
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+++++G + A++ G +AL+ ++ + +++G AI +
Sbjct: 420 ILESNGSSSMASVCGGSLALYASGIKLKSLIAGVAMGLIIQGEETAILSD---------I 470
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D G +V +Q + A S +L AK+ +++ +
Sbjct: 471 SALEDMQGDMDFKIAGNLEG-VVALQMDTKIAGLSLALLSQILQQAKEARGAILECMEQA 529
Query: 238 IS 239
I
Sbjct: 530 IE 531
>gi|307564828|ref|ZP_07627356.1| polyribonucleotide nucleotidyltransferase [Prevotella amnii CRIS
21A-A]
gi|307346550|gb|EFN91859.1| polyribonucleotide nucleotidyltransferase [Prevotella amnii CRIS
21A-A]
Length = 751
Score = 131 bits (328), Expect = 9e-29, Method: Composition-based stats.
Identities = 46/240 (19%), Positives = 85/240 (35%), Gaps = 18/240 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +++R I GS + + G+T L+T TL +EK+ + +
Sbjct: 325 RMDGRATDEIRHIWCEVDALPMPHGSAIFQRGETMSLSTCTLGTKMDEKMVDNVLEKSYQ 384
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P STG + V R+ G RAL++ + + +
Sbjct: 385 RFLLHYNFPPFSTGEAKAQRGVGRREIGHGHL----AWRALKNQIPTD--FPYTVRLVSQ 438
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+++++G + A + +AL D M+ + + + G + D+
Sbjct: 439 ILESNGSSSMATVCAGTLALFDAGVPMKKPVSGIAMGLIKN-------PGEDKYAILSDI 491
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T G I Q + S + L AK ++ +
Sbjct: 492 LGDEDHLGDMDFKTTGTRDG-ITATQMDIKCDGLSYEILEKALMQAKAGREYILGKMMET 550
Score = 103 bits (257), Expect = 2e-20, Method: Composition-based stats.
Identities = 36/231 (15%), Positives = 75/231 (32%), Gaps = 19/231 (8%)
Query: 7 QENQMREISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGM 65
Q R IS+ V+K A+G+ +++ G+T LL T ++ E
Sbjct: 9 QLADGRTISIETGKVAKQADGAAMLRMGNTVLLATVCAAKEAVPGTDFMPLQVDYREQYS 68
Query: 66 LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125
G+ R++ R LR +
Sbjct: 69 AAGRFP--GGFTKREGKANDDEILTSRLVDRVLRPLFPSDYHTEVY-------------V 113
Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185
+ ++ V D L + + ++ ++ + + G I++ + +
Sbjct: 114 QIMLLSADGVDQPDALAGFAASAALAASTIPIEYPISEVRVARIKGEYIINPTFDQMKEA 173
Query: 186 DVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
D+D T +I+ V+ E S+ L A + I + +LQ++
Sbjct: 174 DMDIMVGATKD-NIMMVE--GEMDEVSEQELIGALKAAHEAIKPMCELQEE 221
>gi|332796515|ref|YP_004458015.1| exosome complex exonuclease 1 [Acidianus hospitalis W1]
gi|332694250|gb|AEE93717.1| exosome complex exonuclease 1 [Acidianus hospitalis W1]
Length = 243
Score = 131 bits (328), Expect = 1e-28, Method: Composition-based stats.
Identities = 61/243 (25%), Positives = 108/243 (44%), Gaps = 23/243 (9%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKV-PMWIRNTKHGWI 59
+RL GR+ +++R + + V K A+GS +V+ G+T +L ++ P + +
Sbjct: 15 LRLDGRRPDELRPMKMEVGVLKNADGSAIVEVGNTKILAAVYGPREMHPRHLALPNRAVL 74
Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119
Y M P ST R + R E+ ++I AL S + + I + +V+
Sbjct: 75 RVRYHMTPFSTDERK-----NPAPSRREIELSKVIREALESQILVEQFPRTSIDVFMEVL 129
Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179
QAD GTR A++ A +A+ D + D +AA++ G G ++DL+
Sbjct: 130 QADAGTRLASLMAASLAVVDAGIPVRDL-------------IAAVAVGKADGVVVLDLNE 176
Query: 180 GEDSTIDVDANFVMTDS-GHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
ED + D M S G I +Q + + + F + LA I + L+K+ +
Sbjct: 177 PEDMWGEADMPVAMMPSIGQINLLQLNGN---MTPEEFRQGMELAMKGINIIYNLEKETL 233
Query: 239 SNE 241
N+
Sbjct: 234 KNK 236
>gi|126730097|ref|ZP_01745909.1| ribonuclease PH [Sagittula stellata E-37]
gi|126709477|gb|EBA08531.1| ribonuclease PH [Sagittula stellata E-37]
Length = 206
Score = 131 bits (328), Expect = 1e-28, Method: Composition-based stats.
Identities = 103/208 (49%), Positives = 145/208 (69%), Gaps = 2/208 (0%)
Query: 32 FGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQ 91
GDTH+L TA+LEE+VP +++ + GW+TAEYGMLPRST +R++REA G+QGGR+ EIQ
Sbjct: 1 MGDTHVLCTASLEERVPPFVKGSGQGWVTAEYGMLPRSTSSRMRREAAMGKQGGRTVEIQ 60
Query: 92 RMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKF 151
R+IGRALR+ VD +ALG RQI +DCDVIQADGGTR A+ITG WVAL + +
Sbjct: 61 RLIGRALRAGVDRNALGERQITVDCDVIQADGGTRCASITGGWVALRLAVNKLMKA--GD 118
Query: 152 QLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATF 211
++ L VAA+SCG+ G ++DLDY EDS VD NF++ ++EVQ SAE + F
Sbjct: 119 IVTDPLISEVAAVSCGIYAGQAVLDLDYPEDSEAGVDGNFILRGDNALIEVQMSAEGSVF 178
Query: 212 SQDHFFAMLNLAKDRIADLIKLQKDVIS 239
S++ +++LA+ + +L+ Q+ +
Sbjct: 179 SRNQMTQLMDLAEKGVVELVAAQRAAVK 206
>gi|195575304|ref|XP_002105619.1| GD16436 [Drosophila simulans]
gi|194201546|gb|EDX15122.1| GD16436 [Drosophila simulans]
Length = 771
Score = 131 bits (328), Expect = 1e-28, Method: Composition-based stats.
Identities = 46/249 (18%), Positives = 86/249 (34%), Gaps = 17/249 (6%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIR-------- 52
+R GR +Q+R IS + K GS L + G T + T +L+ +
Sbjct: 354 LRCDGRDYDQLRNISCQVDMYKPLHGSALFQRGQTQVFCTVSLDSQESAMKLDSLAALDS 413
Query: 53 -NTKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQ 111
K Y P +TG + V R+ G R+L +
Sbjct: 414 GGLKAKNFMLHYEFPPYATGEVGRIGPVGRRELGHGAL----AERSLLPTLPNDYPF--T 467
Query: 112 IIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG 171
+ + +V++++G + A++ G +AL D + + + V K + +
Sbjct: 468 VRLTSEVLESNGSSSMASVCGGSLALMDAGVPVSAPAAGVAIGLVTKFE-NDDTKHLEDY 526
Query: 172 YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231
+ D+ ED D+D T G +Q + L A D + ++
Sbjct: 527 RILTDILGIEDYMGDMDMKVAGTRKG-FTAIQADLKIPGIPLKVVMESLQKATDAKSKIL 585
Query: 232 KLQKDVISN 240
+ + I
Sbjct: 586 DIMSEAIRE 594
Score = 84.9 bits (208), Expect = 8e-15, Method: Composition-based stats.
Identities = 31/225 (13%), Positives = 68/225 (30%), Gaps = 18/225 (8%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRST 70
R ++ + ++++A G+ + + GDT ++ TA + K
Sbjct: 50 RNMTFSSGRLARFANGTAVCQMGDTAVMVTAVAKTKPNPGQGFMPLVVDYRLKNAASGRI 109
Query: 71 GNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAI 130
+ + R+I R+LR + Q++ + + A AI
Sbjct: 110 P--MNFMRRELGPSEKEILSARLIDRSLRPLFHKDYRTETQLVCNMLAMDAVHSPDVLAI 167
Query: 131 TGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDAN 190
A +A G + A+ G+ G +++ E T +D
Sbjct: 168 NAASMA-------------LSLSDIPWNGPIGAVRVGLCDGEVLINPTRRELQTSQLDLV 214
Query: 191 FVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
T +V ++ + Q + +I +
Sbjct: 215 VSATKQNLVVMLE--GKGNVVLQQDLLKAIKQGTREAQFIIHEIE 257
>gi|330835838|ref|YP_004410566.1| exosome complex exonuclease Rrp41 [Metallosphaera cuprina Ar-4]
gi|329567977|gb|AEB96082.1| exosome complex exonuclease Rrp41 [Metallosphaera cuprina Ar-4]
Length = 245
Score = 131 bits (328), Expect = 1e-28, Method: Composition-based stats.
Identities = 62/242 (25%), Positives = 108/242 (44%), Gaps = 23/242 (9%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKV-PMWIRNTKHGWIT 60
RL GR+ +++R + + V K A+GS LV+ G+T ++ ++ P + +
Sbjct: 16 RLDGRRPDELRPMKMEIGVLKNADGSSLVEVGNTKIIAAVYGPREMHPRHLALPNRATLR 75
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
Y M P ST R R E+ ++I AL S V + I + +VIQ
Sbjct: 76 VRYHMTPFSTDERKSPV-----PSRREIELSKVIREALESSVLVEQFPRSSIDVFMEVIQ 130
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
AD GTR A++ A +A+ D + D +AA++ G G ++DL+
Sbjct: 131 ADAGTRLASLMAASLAIIDAGIPVRDA-------------IAAVAVGKADGVVVLDLNEP 177
Query: 181 EDSTIDVDANF-VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
ED + D +M G I +Q + + + F L+LA I + ++K+V+
Sbjct: 178 EDMWGEADMPVAMMPSLGQITLIQLNGH---MTPEEFKQGLDLAYKGINTIYSMEKEVLK 234
Query: 240 NE 241
++
Sbjct: 235 SK 236
>gi|126304424|ref|XP_001382164.1| PREDICTED: hypothetical protein [Monodelphis domestica]
Length = 785
Score = 131 bits (328), Expect = 1e-28, Method: Composition-based stats.
Identities = 46/247 (18%), Positives = 86/247 (34%), Gaps = 16/247 (6%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE--------EKVPMWIRN 53
R GR +R+IS + + GS L + G T +L T T + + + I
Sbjct: 358 RCDGRDLTSLRDISCEVDMFRTLHGSALFQRGQTQVLCTVTFDSLESSLKSDPITTAISG 417
Query: 54 TKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQII 113
K Y P +T K V+ R+ G ++L V+ I
Sbjct: 418 IKEKNFMLHYEFPPYATNETGKVTGVNRRELGHGAL----AEKSLYPVIPKDFPF--TIR 471
Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP 173
+ +V++++G + A+ G +AL D + + + K +
Sbjct: 472 VTSEVLESNGSSSMASACGGSLALMDAGVPISSAVAGVAIGLIAKNSSNK-EGEIEDYRL 530
Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
+ D+ ED D+D T+ G I +Q + + A +++++
Sbjct: 531 LTDILGIEDYNGDMDFKMAGTNKG-ITALQADIKLPGIPIKIVMEAIQQATAAKREILQI 589
Query: 234 QKDVISN 240
IS
Sbjct: 590 MNKTISK 596
Score = 83.0 bits (203), Expect = 4e-14, Method: Composition-based stats.
Identities = 38/233 (16%), Positives = 83/233 (35%), Gaps = 25/233 (10%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTA---TLEEKVPMWIRNTKHGWITAEYGMLP 67
R++ ++ ++++A+G +V+ G+T ++ TA T + A G +P
Sbjct: 54 RKLEISSGRLARFADGCAVVQSGETAVMVTAVSKTKPSPSQFMPLVVDYKQKAAAAGRIP 113
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
+ R + R+I R++R + Q++ + + +
Sbjct: 114 TNHLRREFGS------SDKEILTSRIIDRSIRPLFPSGYFYDTQVLCNLLAVDSVNEPDV 167
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
AI GA A G + A+ G++ G IV+ E S +
Sbjct: 168 LAINGASAA-------------LSLSDIPWNGPIGAVRIGIIDGEYIVNPTRKEMSYSTL 214
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
+ + IV ++ +AE Q F + + +I+ + ++
Sbjct: 215 NLVVAGAPNSQIVMLEAAAENVL--QQDFCHAIKVGMKHNQQIIQGIQKLMKE 265
>gi|295322007|pdb|3M7N|D Chain D, Archaeoglobus Fulgidus Exosome With Rna Bound To The
Active Site
gi|295322008|pdb|3M7N|E Chain E, Archaeoglobus Fulgidus Exosome With Rna Bound To The
Active Site
gi|295322009|pdb|3M7N|F Chain F, Archaeoglobus Fulgidus Exosome With Rna Bound To The
Active Site
gi|295322019|pdb|3M85|D Chain D, Archaeoglobus Fulgidus Exosome Y70a With Rna Bound To The
Active Site
gi|295322020|pdb|3M85|E Chain E, Archaeoglobus Fulgidus Exosome Y70a With Rna Bound To The
Active Site
gi|295322021|pdb|3M85|F Chain F, Archaeoglobus Fulgidus Exosome Y70a With Rna Bound To The
Active Site
Length = 258
Score = 131 bits (328), Expect = 1e-28, Method: Composition-based stats.
Identities = 58/243 (23%), Positives = 100/243 (41%), Gaps = 26/243 (10%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKV-PMWIRNTKHGWI 59
+RL GR+ +++R I + V K A+GSC ++ G ++ +V P +++ I
Sbjct: 16 LRLDGRKFDELRPIKIEASVLKRADGSCYLEMGKNKVIAAVFGPREVHPEHLQDPSKAII 75
Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119
Y M P S R + RS EI ++ A +V+ I I +V+
Sbjct: 76 RYRYNMAPFSVEERKRPG-----PDRRSIEISKVSKEAFEAVIMKELFPRSAIDIFVEVL 130
Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179
QAD G+RTA + A VAL D +KG + +++ G G ++D
Sbjct: 131 QADAGSRTACLNAASVALVDAGV-------------PMKGMITSVAVGKADGQLVLDPMK 177
Query: 180 GEDSTIDVDA----NFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
ED+ + D I +Q ++D + LAK + ++Q+
Sbjct: 178 EEDNFGEADMPFAFLIRNGKIESIALLQMDGR---MTRDEVKQAIELAKKGALQIYEMQR 234
Query: 236 DVI 238
+ I
Sbjct: 235 EAI 237
>gi|195341759|ref|XP_002037473.1| GM12088 [Drosophila sechellia]
gi|194131589|gb|EDW53632.1| GM12088 [Drosophila sechellia]
Length = 485
Score = 131 bits (328), Expect = 1e-28, Method: Composition-based stats.
Identities = 46/249 (18%), Positives = 86/249 (34%), Gaps = 17/249 (6%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIR-------- 52
+R GR +Q+R IS + K GS L + G T + T +L+ +
Sbjct: 68 LRCDGRDYDQLRNISCQVDMYKPLHGSALFQRGQTQVFCTVSLDSQESAMKLDSLAALDS 127
Query: 53 -NTKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQ 111
K Y P +TG + V R+ G R+L +
Sbjct: 128 GGLKAKNFMLHYEFPPYATGEVGRIGPVGRRELGHGAL----AERSLLPTLPNDYPF--T 181
Query: 112 IIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG 171
+ + +V++++G + A++ G +AL D + + + V K + +
Sbjct: 182 VRLTSEVLESNGSSSMASVCGGSLALMDAGVPVSAPAAGVAIGLVTKFE-NDDTKHLQDY 240
Query: 172 YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231
+ D+ ED D+D T G +Q + L A D + ++
Sbjct: 241 RILTDILGIEDYMGDMDMKVAGTRKG-FTAIQADLKIPGIPLKVVMESLQKATDAKSKIL 299
Query: 232 KLQKDVISN 240
+ + I
Sbjct: 300 DIMSEAIRE 308
>gi|186683767|ref|YP_001866963.1| polynucleotide phosphorylase/polyadenylase [Nostoc punctiforme PCC
73102]
gi|226702669|sp|B2J2V3|PNP_NOSP7 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|186466219|gb|ACC82020.1| 3' exoribonuclease [Nostoc punctiforme PCC 73102]
Length = 718
Score = 131 bits (328), Expect = 1e-28, Method: Composition-based stats.
Identities = 49/244 (20%), Positives = 90/244 (36%), Gaps = 20/244 (8%)
Query: 1 MRLSGRQENQMREISLTRRVSK-YAEGSCLVKFGDTHLLTTATLE-----EKVPMWIRNT 54
+R+ GR+ +++R +S V GS L T +L+T TL + + ++
Sbjct: 322 VRVDGRKLDEVRRVSCLVGVLPKRVHGSGLFNRELTQVLSTCTLGTPGDAQNLNDDMQLD 381
Query: 55 KHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIII 114
+H Y P S G + R+ G R+L V+ I I
Sbjct: 382 QHKRYLHHYNFPPFSVGETKPMRSPGRREIGHGAL----AERSLIPVLPSKEQFPYVIRI 437
Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPI 174
+V+ ++G T ++ G+ +AL D + + + + G +
Sbjct: 438 VSEVLSSNGSTSMGSVCGSTLALMDAGVPILKPVSGAAMGLIKDGDEV---------RIL 488
Query: 175 VDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
D+ ED D+D TD+G I +Q + S D ++ AK +++
Sbjct: 489 TDIQGIEDFLGDMDFKVAGTDTG-ITALQMDMKIPGLSLDVISQAVHQAKAARLHILEKM 547
Query: 235 KDVI 238
I
Sbjct: 548 LACI 551
Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats.
Identities = 50/235 (21%), Positives = 88/235 (37%), Gaps = 26/235 (11%)
Query: 10 QMREISLTRRV-SKYAEGSCLVKFGDTHLLTTAT---LEEKVPMWIRNTKHGWITAEYGM 65
R+I L + + A GS L++ GDT +L TAT E + + G
Sbjct: 11 DGRDIRLKVGLLAPQAGGSVLIESGDTSVLVTATRSQAREGIDFLPLTVDYEERLYAAGR 70
Query: 66 LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125
+P R GR ++ R+I R +R + QII +
Sbjct: 71 IPGGIMRR------EGRPPEKTILTSRLIDRPMRPLFPSWLRDDLQIIALTLSMDELVPP 124
Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185
A+TGA +A G +AA+ G++ I++ Y E
Sbjct: 125 DVLAVTGASIAT-------------LIAQIPFNGPMAAVRVGLVGDDFIINPTYAEIEAG 171
Query: 186 DVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
D+D + G ++ V+ A + + ++ + + DLIK Q+D+++
Sbjct: 172 DLDLVVAGSPHG-VIMVEAGANQ--LPERDIIEAIDFGYEAVRDLIKAQQDLVAE 223
>gi|269977469|ref|ZP_06184441.1| polyribonucleotide nucleotidyltransferase [Mobiluncus mulieris
28-1]
gi|306819115|ref|ZP_07452829.1| polyribonucleotide nucleotidyltransferase [Mobiluncus mulieris ATCC
35239]
gi|269934385|gb|EEZ90947.1| polyribonucleotide nucleotidyltransferase [Mobiluncus mulieris
28-1]
gi|304648091|gb|EFM45402.1| polyribonucleotide nucleotidyltransferase [Mobiluncus mulieris ATCC
35239]
Length = 794
Score = 131 bits (328), Expect = 1e-28, Method: Composition-based stats.
Identities = 41/241 (17%), Positives = 81/241 (33%), Gaps = 13/241 (5%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +R ++ V GS L + G+T +L TL E+ + H
Sbjct: 342 RIDGRGCKDIRSLAAEVEVLPRVHGSALFQRGETQVLGVTTLNMLRMEQQLDNLSPITHK 401
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
+Y P TG + + R+ G AL V+ I +
Sbjct: 402 RYMHQYNFPPYCTGETGRVGSPKRREIGHGHL----AEMALVPVIPSREEFPYAIRQVSE 457
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
++ ++G + ++ + ++L + + + + + G + D+
Sbjct: 458 IMGSNGSSSMGSVCASTLSLLNAGVPLRAPIAGIAMGLMSEP----GEDGQTHFATLTDI 513
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED+ D+D T I +Q + D L A+D ++ +
Sbjct: 514 LGAEDAFGDMDFKVAGTKEF-ITALQLDTKLDGIPSDVLVGALGQARDARLKILDVMHAA 572
Query: 238 I 238
I
Sbjct: 573 I 573
Score = 87.6 bits (215), Expect = 1e-15, Method: Composition-based stats.
Identities = 38/245 (15%), Positives = 71/245 (28%), Gaps = 38/245 (15%)
Query: 12 REISLTRRV-SKYAEGSCLVKF-GDTHLLTTATLEEKVPMWIRNT----KHGWITAEYGM 65
R + + ++ A GS +V G+T + T+ ++ G
Sbjct: 21 RVLRFETGLLARQAAGSAMVTLDGETVVFAATTVGKQPKDQFDFFPLTVDVEEKQYAAGR 80
Query: 66 LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125
+P S R GR G S R+I R LR Q++ I D
Sbjct: 81 IPGSFFRR------EGRPGTESILAARLIDRPLRPAFVKGLRNEVQVVDTVMAIHPDEAY 134
Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185
AI + ++ G + ++ G + Y +
Sbjct: 135 DVVAINASSMSTQLAG-------------LPFSGPIGGTRLSLIDGQWVAFPTYPQMEQA 181
Query: 186 DVDANFVM---TDSGHIVEVQGSAERATF----------SQDHFFAMLNLAKDRIADLIK 232
+ + I+ V+ + +++ L AK I +L +
Sbjct: 182 TFNMVVAGRVVGEDVAIMMVEAGGGDNAWELIQAGQQAPTEEVVAGALEAAKPVIRELCR 241
Query: 233 LQKDV 237
Q +V
Sbjct: 242 AQSEV 246
>gi|257068221|ref|YP_003154476.1| polynucleotide phosphorylase/polyadenylase [Brachybacterium faecium
DSM 4810]
gi|256559039|gb|ACU84886.1| guanosine pentaphosphate synthetase I/polynucleotide phosphorylase
[Brachybacterium faecium DSM 4810]
Length = 753
Score = 131 bits (328), Expect = 1e-28, Method: Composition-based stats.
Identities = 40/242 (16%), Positives = 82/242 (33%), Gaps = 14/242 (5%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
+R+ GR +R +S V GS L + G+T ++ +TL E+ + +
Sbjct: 349 VRIDGRGLRDIRALSAEVEVLPRVHGSALFQRGETQIMGVSTLNMLKMEQQIDSLGPVER 408
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P STG + + R+ G RA+ V+ I
Sbjct: 409 KRYIHHYNFPPYSTGETGRVGSPKRREVGHGML----AERAIVPVLPSREEFPYAIRQVS 464
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+ + ++G T ++ + ++L + + + + I + D
Sbjct: 465 EALGSNGSTSMGSVCASTLSLLNAGVPLRAPVAGIAMGLISDTIEGEIRYA-----ALTD 519
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED+ D+D T I +Q + L+ A + ++ + +
Sbjct: 520 ILGAEDAFGDMDFKVAGTGEF-ITAIQLDTKLDGLPASVLTGALSQAHEARLAILGVLGE 578
Query: 237 VI 238
I
Sbjct: 579 AI 580
Score = 45.2 bits (105), Expect = 0.008, Method: Composition-based stats.
Identities = 34/250 (13%), Positives = 66/250 (26%), Gaps = 35/250 (14%)
Query: 5 GRQENQMREISLTRRVSKYAEGSCLVKF--GDTHLLTTATLE----EKVPMWIRNTKHGW 58
GR REI + + DT + + + E +
Sbjct: 21 GR-----REIRFETGRLAQQAAGAVAVYLDDDTMVFSATAVSNKPKEHFDFFPLTIDVEE 75
Query: 59 ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDV 118
G +P S R GR G + R+ R LR Q+++
Sbjct: 76 RMYAAGRIPGSFFRR------EGRPGTDAILAARLTDRPLRPAFVKGLRNEVQVVLTVMA 129
Query: 119 IQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLD 178
D I GA + +++ + S G
Sbjct: 130 NGPDDAYDVVGINGASASTQISGLPFSGPIGAVRIALMPN------SQGGGQWVAFPTFS 183
Query: 179 YGEDSTIDVDANFVMTDSG-HIVEVQGSAERATF-----------SQDHFFAMLNLAKDR 226
+++ + + + I+ V+ A ++ ++ + AK
Sbjct: 184 QLDEAVFSMVVAGRIVEDDVAIMMVEAEATDNSWNLIKEQGAIAPTESVVAEGIEAAKVF 243
Query: 227 IADLIKLQKD 236
I L Q++
Sbjct: 244 IRSLCVAQQE 253
>gi|327400938|ref|YP_004341777.1| exosome complex exonuclease 1 [Archaeoglobus veneficus SNP6]
gi|327316446|gb|AEA47062.1| exosome complex exonuclease 1 [Archaeoglobus veneficus SNP6]
Length = 246
Score = 131 bits (328), Expect = 1e-28, Method: Composition-based stats.
Identities = 60/245 (24%), Positives = 96/245 (39%), Gaps = 26/245 (10%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKV-PMWIRNTKHGWIT 60
RL GR +++R I + V + A+GSC ++ G ++ +V P +++ I
Sbjct: 14 RLDGRDFDELRPIKIEAGVLRRADGSCYIEMGKNKIVAAVYGPREVHPRHLQDPSRAIIR 73
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
Y M P S R K RS EI ++ AL V+ I I +V+Q
Sbjct: 74 YRYNMAPFSVEERKKPG-----PDRRSIEISKVSREALEPVILKELFPRSGIDIFVEVLQ 128
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
AD GTRTA + A VAL D M + A++ + G ++D
Sbjct: 129 ADAGTRTACLNAASVALIDAGVAMRG-------------MITAVAVAKVEGEIVLDPMKE 175
Query: 181 EDSTIDVD----ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
ED+ + D I +Q + S + L LAK + +Q++
Sbjct: 176 EDNYGEADVPFAFLIRNGKIESIALLQMDGK---MSAEEMKKALELAKKGAMQIYNIQRE 232
Query: 237 VISNE 241
I +
Sbjct: 233 AIMRK 237
>gi|227875834|ref|ZP_03993960.1| polynucleotide phosphorylase/polyadenylase [Mobiluncus mulieris
ATCC 35243]
gi|227843582|gb|EEJ53765.1| polynucleotide phosphorylase/polyadenylase [Mobiluncus mulieris
ATCC 35243]
Length = 794
Score = 131 bits (328), Expect = 1e-28, Method: Composition-based stats.
Identities = 41/241 (17%), Positives = 81/241 (33%), Gaps = 13/241 (5%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +R ++ V GS L + G+T +L TL E+ + H
Sbjct: 342 RIDGRGCKDIRSLAAEVEVLPRVHGSALFQRGETQVLGVTTLNMLRMEQQLDNLSPITHK 401
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
+Y P TG + + R+ G AL V+ I +
Sbjct: 402 RYMHQYNFPPYCTGETGRVGSPKRREIGHGHL----AEMALVPVIPSREEFPYAIRQVSE 457
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
++ ++G + ++ + ++L + + + + + G + D+
Sbjct: 458 IMGSNGSSSMGSVCASTLSLLNAGVPLRAPIAGIAMGLMSEP----GEDGQTHFATLTDI 513
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED+ D+D T I +Q + D L A+D ++ +
Sbjct: 514 LGAEDAFGDMDFKVAGTKEF-ITALQLDTKLDGIPSDVLVGALGQARDARLKILDVMHAA 572
Query: 238 I 238
I
Sbjct: 573 I 573
Score = 87.6 bits (215), Expect = 1e-15, Method: Composition-based stats.
Identities = 38/245 (15%), Positives = 71/245 (28%), Gaps = 38/245 (15%)
Query: 12 REISLTRRV-SKYAEGSCLVKF-GDTHLLTTATLEEKVPMWIRNT----KHGWITAEYGM 65
R + + ++ A GS +V G+T + T+ ++ G
Sbjct: 21 RVLRFETGLLARQAAGSAMVTLDGETVVFAATTVGKQPKDQFDFFPLTVDVEEKQYAAGR 80
Query: 66 LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125
+P S R GR G S R+I R LR Q++ I D
Sbjct: 81 IPGSFFRR------EGRPGTESILAARLIDRPLRPAFVKGLRNEVQVVDTVMAIHPDEAY 134
Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185
AI + ++ G + ++ G + Y +
Sbjct: 135 DVVAINASSMSTQLAG-------------LPFSGPIGGTRLSLIDGQWVAFPTYPQMEQA 181
Query: 186 DVDANFVM---TDSGHIVEVQGSAERATF----------SQDHFFAMLNLAKDRIADLIK 232
+ + I+ V+ + +++ L AK I +L +
Sbjct: 182 TFNMVVAGRVVGEDVAIMMVEAGGGDNAWELIQAGQQAPTEEVVAGALEAAKPVIRELCR 241
Query: 233 LQKDV 237
Q +V
Sbjct: 242 AQSEV 246
>gi|194904919|ref|XP_001981085.1| GG11868 [Drosophila erecta]
gi|190655723|gb|EDV52955.1| GG11868 [Drosophila erecta]
Length = 771
Score = 131 bits (328), Expect = 1e-28, Method: Composition-based stats.
Identities = 46/249 (18%), Positives = 86/249 (34%), Gaps = 17/249 (6%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIR-------- 52
+R GR +Q+R IS + K GS L + G T + T +L+ +
Sbjct: 354 LRCDGRDYDQLRNISCQVDMYKPLHGSALFQRGQTQVFCTVSLDSQESAMKLDSLTALES 413
Query: 53 -NTKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQ 111
K Y P +TG + V R+ G R+L +
Sbjct: 414 GGLKAKNFMLHYEFPPYATGEVGRIGPVGRRELGHGAL----AERSLLPTLPNEYPF--T 467
Query: 112 IIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG 171
+ + +V++++G + A++ G +AL D + + + V K + +
Sbjct: 468 VRLTSEVLESNGSSSMASVCGGSLALMDAGVPVSAPAAGVAIGLVTKFE-NDDTKHLQDY 526
Query: 172 YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231
+ D+ ED D+D T G +Q + L A D + ++
Sbjct: 527 RILTDILGIEDYMGDMDMKVAGTRKG-FTAIQADLKVPGIPLKVVMESLQKATDAKSKIL 585
Query: 232 KLQKDVISN 240
+ + I
Sbjct: 586 DIMSEAIRE 594
Score = 84.5 bits (207), Expect = 1e-14, Method: Composition-based stats.
Identities = 32/225 (14%), Positives = 68/225 (30%), Gaps = 18/225 (8%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRST 70
R ++ + ++++A G+ + + GDT ++ TA + K
Sbjct: 50 RNMTFSSGRLARFANGTAVCQMGDTAVMVTAVAKSKPNPGQGFMPLVVDYRLKNAASGRI 109
Query: 71 GNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAI 130
+ + R+I R+LR + Q++ + + A AI
Sbjct: 110 P--MNFMRRELGPSEKEILSARLIDRSLRPLFHKDYRTETQLVCNMLAMDAVHSPDVLAI 167
Query: 131 TGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDAN 190
A VA G + A+ G+ G +++ E T +D
Sbjct: 168 NAASVA-------------LSLSDIPWNGPIGAVRVGLCDGEVLINPTRRELQTSQLDLV 214
Query: 191 FVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
T +V ++ + Q + +I +
Sbjct: 215 VSATKQNLVVMLE--GKGNVVLQQDLLKAIKQGTREAQFIIHEIE 257
>gi|28572501|ref|NP_789281.1| polynucleotide phosphorylase/polyadenylase [Tropheryma whipplei
TW08/27]
gi|81628250|sp|Q820Y9|PNP_TROW8 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|28410633|emb|CAD67019.1| mRNA processing exonuclease [Tropheryma whipplei TW08/27]
Length = 735
Score = 131 bits (328), Expect = 1e-28, Method: Composition-based stats.
Identities = 41/241 (17%), Positives = 81/241 (33%), Gaps = 14/241 (5%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR + +R + +V GS + + G+T +L TL E+ +
Sbjct: 350 RMDGRGLSDIRPLDAEVQVVPRVHGSAVFQRGETQVLGVTTLNMLKMEQQIDSLAPIVSK 409
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P STG + + R+ G RAL V+ I +
Sbjct: 410 RYIHHYNFPPYSTGEVGRVGSPKRREIGHGFL----AERALVPVLPSREDFPYAIRQVSE 465
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ ++G T ++ + ++L + + + + + G + + D+
Sbjct: 466 ALGSNGSTSMGSVCASTLSLLNAGVPLRAPVAGIAMGLI-----SGRVDGEMRYVTLTDI 520
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED+ D+D T I +Q + L A+ ++ + V
Sbjct: 521 SGSEDALGDMDFKVAGTSDF-ITALQLDTKLDGIPAHVLSEALAHARSARLAILDVLTRV 579
Query: 238 I 238
I
Sbjct: 580 I 580
>gi|28493388|ref|NP_787549.1| polynucleotide phosphorylase/polyadenylase [Tropheryma whipplei
str. Twist]
gi|81437795|sp|Q83G94|PNP_TROWT RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|28476429|gb|AAO44518.1| polyribonucleotide nucleotidyltransferase [Tropheryma whipplei str.
Twist]
Length = 738
Score = 131 bits (328), Expect = 1e-28, Method: Composition-based stats.
Identities = 41/241 (17%), Positives = 81/241 (33%), Gaps = 14/241 (5%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR + +R + +V GS + + G+T +L TL E+ +
Sbjct: 353 RMDGRGLSDIRPLDAEVQVVPRVHGSAVFQRGETQVLGVTTLNMLKMEQQIDSLAPIVSK 412
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P STG + + R+ G RAL V+ I +
Sbjct: 413 RYIHHYNFPPYSTGEVGRVGSPKRREIGHGFL----AERALVPVLPSREDFPYAIRQVSE 468
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ ++G T ++ + ++L + + + + + G + + D+
Sbjct: 469 ALGSNGSTSMGSVCASTLSLLNAGVPLRAPVAGIAMGLI-----SGRVDGEMRYVTLTDI 523
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED+ D+D T I +Q + L A+ ++ + V
Sbjct: 524 SGSEDALGDMDFKVAGTSDF-ITALQLDTKLDGIPAHVLSEALAHARSARLAILDVLTRV 582
Query: 238 I 238
I
Sbjct: 583 I 583
>gi|325969194|ref|YP_004245386.1| exosome complex exonuclease 1 [Vulcanisaeta moutnovskia 768-28]
gi|323708397|gb|ADY01884.1| exosome complex exonuclease 1 [Vulcanisaeta moutnovskia 768-28]
Length = 246
Score = 131 bits (328), Expect = 1e-28, Method: Composition-based stats.
Identities = 71/242 (29%), Positives = 101/242 (41%), Gaps = 22/242 (9%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPM-WIRNTKHGWIT 60
R GR N+ R + + V AEGS LV +G+T +L +VP + +
Sbjct: 15 RSDGRLPNEHRPVRMEVGVISNAEGSALVAYGNTVILAAVYGPREVPQKHLELPDKAILR 74
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
Y M+P ST K S R+ I ++I AL VV L I + +V+Q
Sbjct: 75 VRYHMIPFSTSEGRKSPTPSRREIE----ISKVIRTALEPVVILERFPRTTIDVYIEVLQ 130
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADG TR IT A +AL D M D +S G + G IVDL+
Sbjct: 131 ADGSTRVTGITAASLALADAGIPMRDLLVG-------------VSVGKVSGTIIVDLNQL 177
Query: 181 EDSTIDVDANF-VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
ED + D +M G I +Q E ++ + LA + +LQKDV+
Sbjct: 178 EDQYGEGDMPLAIMYGRGLITLMQADGE---WTPTEVNQAVELAFKAAEQIYRLQKDVLK 234
Query: 240 NE 241
N+
Sbjct: 235 NK 236
>gi|225164705|ref|ZP_03726942.1| Polyribonucleotide nucleotidyltransferase [Opitutaceae bacterium
TAV2]
gi|224800695|gb|EEG19054.1| Polyribonucleotide nucleotidyltransferase [Opitutaceae bacterium
TAV2]
Length = 747
Score = 131 bits (328), Expect = 1e-28, Method: Composition-based stats.
Identities = 48/243 (19%), Positives = 79/243 (32%), Gaps = 13/243 (5%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE-----EKVPMWIRNTK 55
+R R +R ++ GS L + GDT L TATL + +
Sbjct: 315 LRADKRDAKTIRPLASEVGTLPRVHGSALFQRGDTQTLVTATLGPTKEAQDMDGLTGGAT 374
Query: 56 HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115
Y P S G + R+ G R+L V+ + I +
Sbjct: 375 SKSFILHYNFPPYSVGETGRFGNPGRREIGHGAL----AERSLVPVLPPEDVFPYTIRLV 430
Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIV 175
D++ ++G T A+I G +AL D + + + I
Sbjct: 431 SDIMASNGSTSMASICGGCLALMDAGVPIIAPVAGISCGLMTSNKDDGS---IDKWVTIT 487
Query: 176 DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
D+ ED D+D T SG I Q + + + A+D +++K
Sbjct: 488 DILGEEDHFGDMDFKLAGTTSG-ITGFQLDLKIKGLPIEIARTAIFQARDARVEILKAML 546
Query: 236 DVI 238
I
Sbjct: 547 GAI 549
Score = 99 bits (247), Expect = 3e-19, Method: Composition-based stats.
Identities = 38/231 (16%), Positives = 73/231 (31%), Gaps = 20/231 (8%)
Query: 13 EISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG 71
I T ++K+A G+ V G+T++ AT + E
Sbjct: 13 NIKFTTGDMAKFANGAVTVSIGETNVFVAATAATTIKPGQDFFPLTVDYREKYSAAGRFP 72
Query: 72 NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAIT 131
G+ + R+ R R + L Q++ A +
Sbjct: 73 --GGYFKREGKPSEKEILTSRLCDRPCRPLFPEGFLNEVQVVGLLLSADQLHEADIAMVN 130
Query: 132 GAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANF 191
GA A G + A+ + G + + + + +D +
Sbjct: 131 GASAA-------------LAISDIPWAGPIGAVRVAQIDGQFVANPTIEQMFSSSLDLIY 177
Query: 192 VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNEV 242
V T+ ++ ++GSA +D F L A I +I K+ ++ +V
Sbjct: 178 VGTEKD-MLMIEGSA--DQIPEDRFVEALEFAHQAIQPIIAAIKE-LAAKV 224
>gi|52548823|gb|AAU82672.1| ribonuclease PH [uncultured archaeon GZfos19A5]
Length = 247
Score = 131 bits (328), Expect = 1e-28, Method: Composition-based stats.
Identities = 61/239 (25%), Positives = 105/239 (43%), Gaps = 23/239 (9%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKV-PMWIRNTKHGWIT 60
RL GR +++R I + V K A+GSC ++ GD ++ ++ P ++ K +
Sbjct: 13 RLDGRGFDELRPIKIEVGVLKRADGSCYLELGDNKVIAAVYGPREMHPRHAQDAKMAVVK 72
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
Y M P ST +R + RS EI ++ A V+ I + +++Q
Sbjct: 73 FRYNMAPFSTDDRKRPG-----PDRRSVEISKVCREAFDPVIMRELYPKMGIEVYVELLQ 127
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
+D GTRTA I A +AL D M+D V++I+ G + G ++DL+
Sbjct: 128 SDAGTRTAGINAASIALADAGIPMKDL-------------VSSIAVGKINGEMVLDLNAA 174
Query: 181 EDSTIDVDANFVM-TDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
ED+ + D M + I +Q +++ F L LA + +LQ+ +
Sbjct: 175 EDNNGEADMPIAMIARTNTITALQMDGR---LTKEEFERGLKLAVGACHQIYELQRTAL 230
>gi|84490039|ref|YP_448271.1| exosome complex exonuclease Rrp41 [Methanosphaera stadtmanae DSM
3091]
gi|84373358|gb|ABC57628.1| putative exosome complex, exonuclease 1 subunit [Methanosphaera
stadtmanae DSM 3091]
Length = 232
Score = 130 bits (327), Expect = 1e-28, Method: Composition-based stats.
Identities = 60/243 (24%), Positives = 105/243 (43%), Gaps = 23/243 (9%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHG-WI 59
+R GR N +R + + V A+GS ++ G+ +L ++ + G +
Sbjct: 6 IRKDGRAYNTLRNMKMEVGVLNNADGSAYIECGNNKILVGVYGPREIHSKKHSKPDGAVL 65
Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119
+Y M P S R + RS EI ++I A+ + L I I +V+
Sbjct: 66 RCKYNMAPFSVKERKRPG-----PNRRSTEISKLISEAITPNIFLEKYPRASIDISIEVL 120
Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179
+A+GGTR I GA +AL D M+D ++A + G + + ++DL
Sbjct: 121 EAEGGTRCLGIVGASLALADAEIPMKDL-------------ISACAVGKVDDHIVLDLSE 167
Query: 180 GEDSTIDVDANF-VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
ED T D ++ +G I +Q +Q+ F L+LA D + +LQK+ +
Sbjct: 168 QEDQTGQADMPLAIIPRTGEITFLQMDGN---LTQEEFEEALDLAYDGCYYINQLQKEAL 224
Query: 239 SNE 241
++
Sbjct: 225 LSK 227
>gi|283458493|ref|YP_003363120.1| polyribonucleotide nucleotidyltransferase [Rothia mucilaginosa
DY-18]
gi|283134535|dbj|BAI65300.1| polyribonucleotide nucleotidyltransferase [Rothia mucilaginosa
DY-18]
Length = 739
Score = 130 bits (327), Expect = 1e-28, Method: Composition-based stats.
Identities = 39/242 (16%), Positives = 82/242 (33%), Gaps = 14/242 (5%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
+R+ GR +R+++ + GS L + G+T ++ TL E+ + K
Sbjct: 347 VRIDGRGLTDIRQLTAEVEILPRVHGSALFERGETQIMGITTLNMLKMEQQLDSLHPVKS 406
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P STG + + R+ G RA+ V+ I
Sbjct: 407 KRYIHHYNFPPYSTGETGRVGSPKRREIGHGAL----AERAITPVLPSREEFPYAIRQVS 462
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+ + ++G T ++ + ++L + + + V G + D
Sbjct: 463 EALGSNGSTSMGSVCASTLSLLNAGVPLRAPVAGIAMGLVSDE-----VDGETRYAALTD 517
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED+ D+D T + +Q + L A++ ++++
Sbjct: 518 ILGAEDALGDMDFKVAGTSEF-VTAIQLDTKLDGIPASVLAGALTQAREARLHILEVLVS 576
Query: 237 VI 238
I
Sbjct: 577 AI 578
Score = 77.6 bits (189), Expect = 1e-12, Method: Composition-based stats.
Identities = 44/248 (17%), Positives = 71/248 (28%), Gaps = 44/248 (17%)
Query: 12 REISLTRR-VSKYAEGSCLVKF-GDTHLL-TTATL---EEKVPMWIRNTKHGWITAEYGM 65
R + ++K A GS LV +T LL T + + G
Sbjct: 21 RHVRFETGRLAKQANGSVLVTIDDETTLLSATVVGKSPRDGFDFFPLTVDVEERMYAAGK 80
Query: 66 LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125
+P S R GR + R+I R LR Q+++ D
Sbjct: 81 IPASYFRR------EGRPSTEAILAARLIDRPLRPAFTKGIRNEVQVVVTVLTYNPDEIY 134
Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185
T AI A + G + + ++ G + Y +
Sbjct: 135 NTFAINAASAST-------------TLSGAPFSGPIGGVRMALIDGQWVCFPKYSQLENA 181
Query: 186 DVDANF--------VMTDSGHIVEVQGSAERATF-----------SQDHFFAMLNLAKDR 226
D T+ I+ V+ A ++ +++ L AK
Sbjct: 182 VFDMAVAGRIVTKADGTEDVAIMMVEAEATDNSWKLIKEDGQTAPTEEVVAQGLEAAKPF 241
Query: 227 IADLIKLQ 234
IA L K Q
Sbjct: 242 IAALCKAQ 249
>gi|300743980|ref|ZP_07073000.1| polyribonucleotide nucleotidyltransferase [Rothia dentocariosa
M567]
gi|300380341|gb|EFJ76904.1| polyribonucleotide nucleotidyltransferase [Rothia dentocariosa
M567]
Length = 753
Score = 130 bits (327), Expect = 1e-28, Method: Composition-based stats.
Identities = 39/242 (16%), Positives = 80/242 (33%), Gaps = 14/242 (5%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKH 56
+R+ GR +R+++ V GS + + G+T ++ TL E+ +
Sbjct: 361 VRIDGRGLTDIRQLTAEVEVLPRVHGSAIFERGETQIMGVTTLNMLKLEQQLDSLYPVTS 420
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P STG + + R+ G RAL V+ I
Sbjct: 421 KRYIHHYNFPPYSTGETGRVGSPKRREIGHGAL----AERALTPVLPSREEFPYAIRQVS 476
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+ + ++G T ++ + ++L + + + V G + D
Sbjct: 477 EALGSNGSTSMGSVCASTLSLLNAGVPLRAPVAGIAMGLVSDE-----VNGETRYAALTD 531
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED+ D+D T + +Q + L A++ ++ +
Sbjct: 532 ILGAEDALGDMDFKVAGTSEF-VTAIQLDTKLDGIPASVLAGALTQAREARLHILDVLTA 590
Query: 237 VI 238
I
Sbjct: 591 AI 592
Score = 74.1 bits (180), Expect = 2e-11, Method: Composition-based stats.
Identities = 46/248 (18%), Positives = 75/248 (30%), Gaps = 44/248 (17%)
Query: 12 REISLTRR-VSKYAEGSCLVKF-GDTHLL-TTA---TLEEKVPMWIRNTKHGWITAEYGM 65
R + ++K A GS LV +T LL TA + E + G
Sbjct: 35 RHVRFETGRLAKQAAGSVLVTIDDETTLLSATAIGKSPREGFDFFPLTVDVEERMYAAGK 94
Query: 66 LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125
+P S R GR + R+I R LR Q+++ I+ D
Sbjct: 95 IPGSFFRR------EGRPPTEAILAARLIDRPLRPAFTKGIRNEVQVVVTVLTIEPDEIY 148
Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185
T AI A + G + + ++ G + Y +
Sbjct: 149 NTFAINAASAST-------------ALSGAPFSGPIGGVRMALIDGQWVCFPKYSQLENA 195
Query: 186 DVDANF--------VMTDSGHIVEVQGSAERATF-----------SQDHFFAMLNLAKDR 226
D ++ I+ V+ A ++ +++ L AK
Sbjct: 196 VFDMAVAGRIVTKADGSEDVAIMMVEAEATDNSWKLIKEDGHAAPTEEIVAEGLEAAKPF 255
Query: 227 IADLIKLQ 234
IA L K Q
Sbjct: 256 IAALCKAQ 263
>gi|224047480|ref|XP_002196971.1| PREDICTED: polyribonucleotide nucleotidyltransferase 1 [Taeniopygia
guttata]
Length = 936
Score = 130 bits (327), Expect = 1e-28, Method: Composition-based stats.
Identities = 44/247 (17%), Positives = 86/247 (34%), Gaps = 17/247 (6%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE--------EKVPMWIRN 53
R GR +R+I + + GS L + G T +L T T + + + +
Sbjct: 511 RCDGRDLTSLRDIKCEVNMFRMLHGSALFQRGQTQVLCTVTFDSLESSVKSDLISTAVSG 570
Query: 54 TKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQII 113
K Y P +T K ++ R+ G RAL+ V+ I
Sbjct: 571 IKDKNFMLHYEFPPYATNEIGKVTGMNRRELGHGAL----AERALKPVIPQDFPF--TIR 624
Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP 173
+ +V++++G + A+ G +AL D + + + V K +
Sbjct: 625 VTSEVLESNGSSSMASACGGSLALMDAGVPVSNAVAGVAIGLVTKCSQG--KGDIEDYRL 682
Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
+ D+ ED D+D T+ G I +Q + + A +++ +
Sbjct: 683 LTDILGIEDYYGDMDFKMAGTNKG-ITALQVDLKLPGIPIKIVVEAIQQATAAKREILHI 741
Query: 234 QKDVISN 240
++
Sbjct: 742 MNQTLAK 748
Score = 74.5 bits (181), Expect = 1e-11, Method: Composition-based stats.
Identities = 38/227 (16%), Positives = 76/227 (33%), Gaps = 34/227 (14%)
Query: 12 REISLTRR----------VSKYAEGSCLVKFGDTHLLTTA---TLEEKVPMWIRNTKHGW 58
R +++ ++K+A+GS +V+ GDT ++ TA T +
Sbjct: 198 RAVTVEVGGRKMELSSGKLAKFADGSAVVQLGDTAVMVTAVSKTKPSPSQFMPLVVDYRQ 257
Query: 59 ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDV 118
A G +P + R + R+I R++R + QI+ +
Sbjct: 258 KAAAAGRIPTNYLRR------ELGSTDKEILTSRVIDRSIRPLFPAGYFYDTQILCNLLA 311
Query: 119 IQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLD 178
+ AI GA A G + A+ G++ G +++
Sbjct: 312 VDGVNDPDILAINGASAA-------------LALSDIPWNGPIGAVRVGLVDGETVINPT 358
Query: 179 YGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKD 225
E S+ ++ +V ++ +AE Q F + +
Sbjct: 359 RKEMSSSALNLVVAGALHSQVVMLEATAEN--ILQQDFCHAIKVGVK 403
>gi|28210966|ref|NP_781910.1| polynucleotide phosphorylase/polyadenylase [Clostridium tetani E88]
gi|75542500|sp|Q895J3|PNP_CLOTE RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|28203405|gb|AAO35847.1| polyribonucleotide nucleotidyltransferase [Clostridium tetani E88]
Length = 705
Score = 130 bits (327), Expect = 2e-28, Method: Composition-based stats.
Identities = 46/244 (18%), Positives = 89/244 (36%), Gaps = 16/244 (6%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R R +++R+IS + G+ L G T ++T AT+ + ++ I + +
Sbjct: 312 RPDERAFDEIRKISCEVGLLPRTHGTGLFTRGLTQVMTAATIGPLADVQILDSIEDEEFK 371
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y S G R+ G +AL ++ I + +
Sbjct: 372 RYMHHYNFPSYSVGETRPLRGPGRREIGHGAL----AEKALEPLIPSEEDFPYTIRLVSE 427
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
V+ ++G T A++ G+ +AL D ++ + + V + + D+
Sbjct: 428 VLSSNGSTSQASVCGSTLALLDAGVPIKRPAAGIAMGLVTNDD-------LTEEKILTDI 480
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T+ G I +Q + + S + L AKD ++ K+
Sbjct: 481 QGIEDFFGDMDFKVAGTEKG-ITALQVDTKISGLSDNCIKETLIKAKDARMYILGKIKEC 539
Query: 238 ISNE 241
I
Sbjct: 540 IPEH 543
Score = 89.9 bits (221), Expect = 3e-16, Method: Composition-based stats.
Identities = 39/236 (16%), Positives = 80/236 (33%), Gaps = 31/236 (13%)
Query: 12 REISLT---RRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----HGWITAEYG 64
R + + + + LV +GDT +L A ++ I + G
Sbjct: 12 RTLKVEYGKVGMLSNC--AILVSYGDTVVLINANASKEPRDGIDFFPLSVEYEERLYSVG 69
Query: 65 MLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGG 124
+P R GR + R I R LR + QI+ +++D
Sbjct: 70 KIPGGFIKR------EGRPTENAILHARAIDRPLRPLFPKGYRNDVQIVCTVLSVESDNQ 123
Query: 125 TRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDST 184
A+ GA +AL S VA +S G++ G I++ +
Sbjct: 124 PDILAMNGASLALC-------------LSSIPFTTPVANVSVGLINGDFILNPTQSQREE 170
Query: 185 IDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
++ T ++ ++ AE +D + + ++ +++ Q++ +
Sbjct: 171 SILNLTVSATKE-RVMMIEAGAEE--VDEDTMYNAIRFGFEQCQKIVEFQEEAMRR 223
>gi|255326374|ref|ZP_05367458.1| polyribonucleotide nucleotidyltransferase [Rothia mucilaginosa ATCC
25296]
gi|255296591|gb|EET75924.1| polyribonucleotide nucleotidyltransferase [Rothia mucilaginosa ATCC
25296]
Length = 739
Score = 130 bits (327), Expect = 2e-28, Method: Composition-based stats.
Identities = 39/242 (16%), Positives = 82/242 (33%), Gaps = 14/242 (5%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
+R+ GR +R+++ + GS L + G+T ++ TL E+ + K
Sbjct: 347 VRIDGRGLTDIRQLTAEVEILPRVHGSALFERGETQIMGITTLNMLKMEQQLDSLHPVKS 406
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P STG + + R+ G RA+ V+ I
Sbjct: 407 KRYIHHYNFPPYSTGETGRVGSPKRREIGHGAL----AERAITPVLPSREEFPYAIRQVS 462
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+ + ++G T ++ + ++L + + + V G + D
Sbjct: 463 EALGSNGSTSMGSVCASTLSLLNAGVPLRAPVAGIAMGLVSDE-----VDGETRYAALTD 517
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED+ D+D T + +Q + L A++ ++++
Sbjct: 518 ILGAEDALGDMDFKVAGTSEF-VTAIQLDTKLDGIPASVLAGALTQAREARLHILEVLVS 576
Query: 237 VI 238
I
Sbjct: 577 AI 578
Score = 76.4 bits (186), Expect = 3e-12, Method: Composition-based stats.
Identities = 47/254 (18%), Positives = 78/254 (30%), Gaps = 44/254 (17%)
Query: 12 REISLTRR-VSKYAEGSCLVKF-GDTHLL-TTA---TLEEKVPMWIRNTKHGWITAEYGM 65
R + ++K A GS LV +T LL TA + E + G
Sbjct: 21 RHVRFETGRLAKQAAGSVLVTIDDETTLLSATAIGKSPREGFDFFPLTVDVEERMYAGGK 80
Query: 66 LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125
+P S R GR + R+I R LR Q+++ + D
Sbjct: 81 IPASYFRR------EGRPSTEAILAARLIDRPLRPAFTKGIRNEVQVVVTVLTYEPDEIY 134
Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185
T AI A + G + + ++ G + Y +
Sbjct: 135 NTFAINAASAST-------------SLSGAPFNGPIGGVRMALIDGQWVCFPKYSQLENA 181
Query: 186 DVDANF--------VMTDSGHIVEVQGSAERATF-----------SQDHFFAMLNLAKDR 226
D T+ I+ V+ A ++ +++ L AK
Sbjct: 182 VFDMAVAGRIVTKADGTEDVAIMMVEAEATDNSWKLIKEDGQTAPTEEIVAEGLEAAKPF 241
Query: 227 IADLIKLQKDVISN 240
IA L K Q D+++
Sbjct: 242 IAALCKAQADLVAR 255
>gi|54650534|gb|AAV36846.1| RH44882p [Drosophila melanogaster]
Length = 771
Score = 130 bits (327), Expect = 2e-28, Method: Composition-based stats.
Identities = 46/249 (18%), Positives = 87/249 (34%), Gaps = 17/249 (6%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIR-------- 52
+R GR +Q+R IS + K GS L + G T + T +L+ +
Sbjct: 354 LRCDGRDYDQLRNISCQVDMYKPLHGSALFQRGQTQVFCTVSLDSQESAMKLDSLAALDS 413
Query: 53 -NTKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQ 111
K Y P +TG + V R+ G R+L +
Sbjct: 414 GGLKAKNFMLHYEFPPYATGEVGRIGPVGRREMGHGAL----AERSLLPTLPNDYPF--T 467
Query: 112 IIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG 171
+ + +V++++G + A++ G +AL D + + + V K + +
Sbjct: 468 VRLTSEVLESNGSSSMASVCGGSLALMDAGVPVSAPAAGVAIGLVTKFE-NDDTKHLQDY 526
Query: 172 YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231
+ D+ ED D+D T G +Q + L A D ++++
Sbjct: 527 RILTDILGIEDYMGDMDMKVAGTRKG-FTAIQADLKIPGIPLKVVMESLQKATDAKSNIL 585
Query: 232 KLQKDVISN 240
+ + I
Sbjct: 586 DIMSEAIRE 594
Score = 84.9 bits (208), Expect = 9e-15, Method: Composition-based stats.
Identities = 31/225 (13%), Positives = 68/225 (30%), Gaps = 18/225 (8%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRST 70
R ++ + ++++A G+ + + GDT ++ TA + K
Sbjct: 50 RNMTFSSGRLARFANGTAVCQMGDTAVMVTAVAKAKPNPGQGFMPLVVDYRLKNAASGRI 109
Query: 71 GNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAI 130
+ + R+I R+LR + Q++ + + A AI
Sbjct: 110 P--MNFMRRELGPSEKEILSARLIDRSLRPLFHKDYRTETQLVCNMLAMDAVHSPDVLAI 167
Query: 131 TGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDAN 190
A +A G + A+ G+ G +++ E T +D
Sbjct: 168 NAASMA-------------LSLSDIPWNGPIGAVRVGLCDGEVLINPTRRELQTSQLDLV 214
Query: 191 FVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
T +V ++ + Q + +I +
Sbjct: 215 VSATKQNLVVMLE--GKGNVVLQQDLLKAIKQGTREAQFIIHEIE 257
>gi|24651641|ref|NP_651867.2| CG11337, isoform A [Drosophila melanogaster]
gi|24651643|ref|NP_733429.1| CG11337, isoform B [Drosophila melanogaster]
gi|281362905|ref|NP_001163783.1| CG11337, isoform D [Drosophila melanogaster]
gi|23172770|gb|AAF57151.2| CG11337, isoform A [Drosophila melanogaster]
gi|23172771|gb|AAN14273.1| CG11337, isoform B [Drosophila melanogaster]
gi|272477256|gb|ACZ95076.1| CG11337, isoform D [Drosophila melanogaster]
Length = 771
Score = 130 bits (327), Expect = 2e-28, Method: Composition-based stats.
Identities = 46/249 (18%), Positives = 87/249 (34%), Gaps = 17/249 (6%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIR-------- 52
+R GR +Q+R IS + K GS L + G T + T +L+ +
Sbjct: 354 LRCDGRDYDQLRNISCQVDMYKPLHGSALFQRGQTQVFCTVSLDSQESAMKLDSLAALDS 413
Query: 53 -NTKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQ 111
K Y P +TG + V R+ G R+L +
Sbjct: 414 GGLKAKNFMLHYEFPPYATGEVGRIGPVGRREMGHGAL----AERSLLPTLPNDYPF--T 467
Query: 112 IIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG 171
+ + +V++++G + A++ G +AL D + + + V K + +
Sbjct: 468 VRLTSEVLESNGSSSMASVCGGSLALMDAGVPVSAPAAGVAIGLVTKFE-NDDTKHLQDY 526
Query: 172 YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231
+ D+ ED D+D T G +Q + L A D ++++
Sbjct: 527 RILTDILGIEDYMGDMDMKVAGTRKG-FTAIQADLKIPGIPLKVVMESLQKATDAKSNIL 585
Query: 232 KLQKDVISN 240
+ + I
Sbjct: 586 DIMSEAIRE 594
Score = 84.9 bits (208), Expect = 9e-15, Method: Composition-based stats.
Identities = 31/225 (13%), Positives = 68/225 (30%), Gaps = 18/225 (8%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRST 70
R ++ + ++++A G+ + + GDT ++ TA + K
Sbjct: 50 RNMTFSSGRLARFANGTAVCQMGDTAVMVTAVAKAKPNPGQGFMPLVVDYRLKNAASGRI 109
Query: 71 GNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAI 130
+ + R+I R+LR + Q++ + + A AI
Sbjct: 110 P--MNFMRRELGPSEKEILSARLIDRSLRPLFHKDYRTETQLVCNMLAMDAVHSPDVLAI 167
Query: 131 TGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDAN 190
A +A G + A+ G+ G +++ E T +D
Sbjct: 168 NAASMA-------------LSLSDIPWNGPIGAVRVGLCDGEVLINPTRRELQTSQLDLV 214
Query: 191 FVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
T +V ++ + Q + +I +
Sbjct: 215 VSATKQNLVVMLE--GKGNVVLQQDLLKAIKQGTREAQFIIHEIE 257
>gi|311113230|ref|YP_003984452.1| polyribonucleotide nucleotidyltransferase [Rothia dentocariosa ATCC
17931]
gi|310944724|gb|ADP41018.1| polyribonucleotide nucleotidyltransferase [Rothia dentocariosa ATCC
17931]
Length = 753
Score = 130 bits (327), Expect = 2e-28, Method: Composition-based stats.
Identities = 39/242 (16%), Positives = 80/242 (33%), Gaps = 14/242 (5%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKH 56
+R+ GR +R+++ V GS + + G+T ++ TL E+ +
Sbjct: 361 VRIDGRGLTDIRQLTAEVEVLPRVHGSAIFERGETQIMGVTTLNMLKLEQQLDSLYPVTS 420
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P STG + + R+ G RAL V+ I
Sbjct: 421 KRYIHHYNFPPYSTGETGRVGSPKRREIGHGAL----AERALTPVLPSREEFPYAIRQVS 476
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+ + ++G T ++ + ++L + + + V G + D
Sbjct: 477 EALGSNGSTSMGSVCASTLSLLNAGVPLRAPVAGIAMGLVSDE-----VDGETRYAALTD 531
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED+ D+D T + +Q + L A++ ++ +
Sbjct: 532 ILGAEDALGDMDFKVAGTSEF-VTAIQLDTKLDGIPASVLAGALTQAREARLHILDVLTA 590
Query: 237 VI 238
I
Sbjct: 591 AI 592
Score = 74.1 bits (180), Expect = 2e-11, Method: Composition-based stats.
Identities = 46/248 (18%), Positives = 75/248 (30%), Gaps = 44/248 (17%)
Query: 12 REISLTRR-VSKYAEGSCLVKF-GDTHLL-TTA---TLEEKVPMWIRNTKHGWITAEYGM 65
R + ++K A GS LV +T LL TA + E + G
Sbjct: 35 RHVRFETGRLAKQAAGSVLVTIDDETTLLSATAIGKSPREGFDFFPLTVDVEERMYAAGK 94
Query: 66 LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125
+P S R GR + R+I R LR Q+++ I+ D
Sbjct: 95 IPGSFFRR------EGRPPTEAILAARLIDRPLRPAFTKGIRNEVQVVVTVLTIEPDEIY 148
Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185
T AI A + G + + ++ G + Y +
Sbjct: 149 NTFAINAASAST-------------ALSGAPFSGPIGGVRMALIDGQWVCFPKYSQLENA 195
Query: 186 DVDANF--------VMTDSGHIVEVQGSAERATF-----------SQDHFFAMLNLAKDR 226
D ++ I+ V+ A ++ +++ L AK
Sbjct: 196 VFDMAVAGRIVTKADGSEDVAIMMVEAEATDNSWKLIKEDGHAAPTEEIVAEGLEAAKPF 255
Query: 227 IADLIKLQ 234
IA L K Q
Sbjct: 256 IAALCKAQ 263
>gi|312137048|ref|YP_004004385.1| ribosomal RNA-processing protein rrp41/ski6 [Methanothermus
fervidus DSM 2088]
gi|311224767|gb|ADP77623.1| ribosomal RNA-processing protein RRP41/SKI6 [Methanothermus
fervidus DSM 2088]
Length = 236
Score = 130 bits (326), Expect = 2e-28, Method: Composition-based stats.
Identities = 65/244 (26%), Positives = 99/244 (40%), Gaps = 23/244 (9%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKV-PMWIRNTKHGWI 59
+R GR N++R + + V K A+GS ++ G +L I+ I
Sbjct: 11 VRKDGRAYNELRPVKIKAGVLKRADGSSYIELGSNKILAAVYGPRDPQITKIKRPDRAII 70
Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119
Y M P S R + RS EI ++ AL + L I I +V+
Sbjct: 71 RCRYNMAPFSVEERKRPG-----PDRRSIEISKITAEALAPSIILEKFPRSSIDIFIEVL 125
Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179
+ADGGTR A IT A VAL D + D V A S G + G+ ++DL
Sbjct: 126 EADGGTRCAGITAASVALADAGIPLRDL-------------VVACSAGKVNGHVVLDLTE 172
Query: 180 GEDSTIDVDANF-VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
ED + D +M + I +Q E + + ++LA + + KLQK I
Sbjct: 173 EEDKEGEADVPVAIMPRTKEITLLQVDGE---LTPEELEKAIDLAIEGCMSINKLQKKSI 229
Query: 239 SNEV 242
++
Sbjct: 230 ERKI 233
>gi|167765957|ref|ZP_02438010.1| hypothetical protein CLOSS21_00448 [Clostridium sp. SS2/1]
gi|317498464|ref|ZP_07956758.1| polyribonucleotide nucleotidyltransferase [Lachnospiraceae
bacterium 5_1_63FAA]
gi|167712360|gb|EDS22939.1| hypothetical protein CLOSS21_00448 [Clostridium sp. SS2/1]
gi|291558981|emb|CBL37781.1| polyribonucleotide nucleotidyltransferase [butyrate-producing
bacterium SSC/2]
gi|316894157|gb|EFV16345.1| polyribonucleotide nucleotidyltransferase [Lachnospiraceae
bacterium 5_1_63FAA]
Length = 696
Score = 130 bits (326), Expect = 2e-28, Method: Composition-based stats.
Identities = 44/246 (17%), Positives = 77/246 (31%), Gaps = 13/246 (5%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEE-KVPMWIRNTKHGWIT 60
R GR Q+R + GS L + G T ++T TL + T
Sbjct: 312 RPDGRDIKQIRPLHAEVDCLPRVHGSALFQRGQTQVMTVTTLGSLSEAQRLDGIDVTETT 371
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
Y V S G R + RAL V+ I ++++
Sbjct: 372 KRYMHHYNFPSYSVGETRPSRGPGRREIGHGALAERALVPVLPSEEEFPYAIRTVSEIME 431
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
++G T +I + ++L ++ + V G + D+
Sbjct: 432 SNGSTSQGSICASSLSLMAAGVPVKAPVAGISVGLV-------TGEGDDDYIILTDIQGL 484
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADL-IKLQKDVI- 238
ED D+D TD G I +Q + ++ + K+ + + VI
Sbjct: 485 EDFFGDMDFKVAGTDKG-ITAIQMDIKIHGLTEQIIREAIARTKEARTHILHDVMNPVIP 543
Query: 239 --SNEV 242
+ V
Sbjct: 544 AARDHV 549
Score = 95.7 bits (236), Expect = 5e-18, Method: Composition-based stats.
Identities = 37/234 (15%), Positives = 77/234 (32%), Gaps = 27/234 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----HGWITAEYGML 66
R + + V+ A G+ + +GDT +L+TAT EK I + G +
Sbjct: 12 RTLMVEVGRVAAQANGAAFMHYGDTVVLSTATASEKPRDGIDFFPLSVEYEEKLYAVGKI 71
Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
P R G+ + R+I R +R + + + D
Sbjct: 72 PGGYLKR------EGKPSENAILTDRVIDRPMRPLFPKDYRNDVALNNLVMSVDPDCSPE 125
Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
A+ G+ +A G A+ G++ G +++ + D
Sbjct: 126 LTAMLGSAIAT-------------AISDIPFDGPTASTMVGLIDGEFVINPTSAQKEVSD 172
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
+ T ++ ++ A +D + A + ++IK +++
Sbjct: 173 LALTVASTRE-KVIMIEAGANEVP--EDVMLEAIFKAHEVNQEIIKFIDTIVAE 223
>gi|168333339|ref|ZP_02691623.1| Polyribonucleotide nucleotidyltransferase [Epulopiscium sp. 'N.t.
morphotype B']
Length = 698
Score = 130 bits (326), Expect = 2e-28, Method: Composition-based stats.
Identities = 44/243 (18%), Positives = 81/243 (33%), Gaps = 18/243 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTK-H 56
R GR ++MR + + GS + G T +LT TL E ++ +
Sbjct: 314 RPDGRALDEMRILKAEVDLIPRVHGSGMFTRGQTQVLTITTLAPLSEAQIIDGLDELDVL 373
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P S G +V R+ G RAL V+ + +
Sbjct: 374 KRYMHHYNFPPFSVGEAKPPRSVGRREIGHGAL----AERALIPVLPTEEEFPYAMRLVS 429
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V+ ++G T A+I G+ +AL ++ + V + D
Sbjct: 430 EVLSSNGSTSQASICGSTLALMAAGVPIKAPVAGISVGLV-------TGESTEDFVLLTD 482
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI-KLQK 235
+ ED D+D + +G I +Q + + + + +I ++
Sbjct: 483 IQGLEDFFGDMDFKVGGSKNG-ITAIQMDMKIDGLTYEIIKGAFEQTRIAREYIIDEIML 541
Query: 236 DVI 238
I
Sbjct: 542 KAI 544
Score = 99.5 bits (246), Expect = 4e-19, Method: Composition-based stats.
Identities = 32/231 (13%), Positives = 74/231 (32%), Gaps = 27/231 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----HGWITAEYGML 66
RE+ + +++ A G+ LV +G+T +L TA +K I + G +
Sbjct: 12 RELKVEIGKMAELANGAALVTYGETCILATAVASDKPKEGIDFFPLSVNYEEKIYAIGKI 71
Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
P R GR ++ R+I R LR + I ++ D
Sbjct: 72 PGGFLKR------EGRPSDKAVLTSRVIDRPLRPLFPKDYRNDVVITTTVMSVEQDCSPE 125
Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
++ G V ++ G++ G +++ +
Sbjct: 126 ITSMIA-------------ASLVLDISEIPFNGPVGSVFVGLVDGEIVINPTMAQREKSQ 172
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
+ + ++ ++ A S++ + +++K ++
Sbjct: 173 LALTVSSSKD-KVMMIEAGANE--ISEEVMLEAIYKGHQANQEIVKFISEI 220
>gi|161079377|ref|NP_001097990.1| CG11337, isoform C [Drosophila melanogaster]
gi|158030458|gb|ABW08815.1| CG11337, isoform C [Drosophila melanogaster]
Length = 721
Score = 130 bits (326), Expect = 2e-28, Method: Composition-based stats.
Identities = 46/249 (18%), Positives = 87/249 (34%), Gaps = 17/249 (6%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIR-------- 52
+R GR +Q+R IS + K GS L + G T + T +L+ +
Sbjct: 304 LRCDGRDYDQLRNISCQVDMYKPLHGSALFQRGQTQVFCTVSLDSQESAMKLDSLAALDS 363
Query: 53 -NTKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQ 111
K Y P +TG + V R+ G R+L +
Sbjct: 364 GGLKAKNFMLHYEFPPYATGEVGRIGPVGRREMGHGAL----AERSLLPTLPNDYPF--T 417
Query: 112 IIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG 171
+ + +V++++G + A++ G +AL D + + + V K + +
Sbjct: 418 VRLTSEVLESNGSSSMASVCGGSLALMDAGVPVSAPAAGVAIGLVTKFE-NDDTKHLQDY 476
Query: 172 YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231
+ D+ ED D+D T G +Q + L A D ++++
Sbjct: 477 RILTDILGIEDYMGDMDMKVAGTRKG-FTAIQADLKIPGIPLKVVMESLQKATDAKSNIL 535
Query: 232 KLQKDVISN 240
+ + I
Sbjct: 536 DIMSEAIRE 544
>gi|241190345|ref|YP_002967739.1| ribonuclease PH [Bifidobacterium animalis subsp. lactis Bl-04]
gi|241195751|ref|YP_002969306.1| ribonuclease PH [Bifidobacterium animalis subsp. lactis DSM 10140]
gi|240248737|gb|ACS45677.1| ribonuclease PH [Bifidobacterium animalis subsp. lactis Bl-04]
gi|240250305|gb|ACS47244.1| ribonuclease PH [Bifidobacterium animalis subsp. lactis DSM 10140]
gi|295793332|gb|ADG32867.1| ribonuclease PH [Bifidobacterium animalis subsp. lactis V9]
Length = 230
Score = 130 bits (326), Expect = 2e-28, Method: Composition-based stats.
Identities = 100/216 (46%), Positives = 138/216 (63%)
Query: 14 ISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGNR 73
+ +TR + EGS L++ G+T ++ TAT + VP W +++ GW+TAEY MLPR+T R
Sbjct: 1 MRITRAFTDVPEGSVLIECGNTRVMCTATFTDTVPRWRKDSGLGWVTAEYSMLPRATAQR 60
Query: 74 VKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGA 133
RE+V G+ GGR+ EI R+IGR LR V+D+ ALG I +DCDV+QADGGTRTA+ITGA
Sbjct: 61 TDRESVRGKVGGRTHEISRLIGRCLRGVIDMKALGENTIQMDCDVLQADGGTRTASITGA 120
Query: 134 WVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVM 193
VAL D L + + VL V+A+S G++ G P++DL Y EDS D N M
Sbjct: 121 HVALVDALNWAKQNGKIKSVKNVLLDSVSAVSVGVIDGEPMLDLPYVEDSRAMTDMNVAM 180
Query: 194 TDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIAD 229
T SG VE+QG+AE FS++ +L+LA +
Sbjct: 181 TGSGKFVEIQGTAEHRPFSRNELGVLLDLATKGNRE 216
>gi|91085763|ref|XP_974155.1| PREDICTED: similar to CG11337 CG11337-PA [Tribolium castaneum]
gi|270009999|gb|EFA06447.1| hypothetical protein TcasGA2_TC009329 [Tribolium castaneum]
Length = 747
Score = 130 bits (326), Expect = 2e-28, Method: Composition-based stats.
Identities = 43/245 (17%), Positives = 85/245 (34%), Gaps = 17/245 (6%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE--------EKVPMWIRN 53
R GR +Q+R I + K GS + + G T + T TL+ + + M I
Sbjct: 348 RCDGRDYDQLRNIECKVNLYKPLHGSAMFQRGQTQVFCTVTLDSHDSAMKLDPMAMLISG 407
Query: 54 TKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQII 113
K Y P +T + + R+ G + L + I
Sbjct: 408 VKEKNFFLHYEFPPFATKETGRIGPIGRREIGHGAL----AEKGLTPSIPDDFPF--TIR 461
Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP 173
+ +V++++G + A++ G +AL D + + + + + +
Sbjct: 462 LTSEVLESNGSSSMASVCGGTLALMDAGVPIVAPAAGVAIGLITRYDD--EKANITDYRL 519
Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
+ DL ED D+D T G I +Q + + A + ++++
Sbjct: 520 LTDLLGIEDYMGDMDFKIAGTKKG-ITALQADIKIPGLPLKIVMESIQKATEAKQKILQI 578
Query: 234 QKDVI 238
+ I
Sbjct: 579 MHECI 583
Score = 81.8 bits (200), Expect = 8e-14, Method: Composition-based stats.
Identities = 34/229 (14%), Positives = 73/229 (31%), Gaps = 25/229 (10%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTA---TLEEKVPMWIRNTKHGWITAEYGMLP 67
R + ++ ++ A+G + GDT ++ TA T + +A G +P
Sbjct: 44 RSLKISTGQYARLADGCAVATLGDTSVMVTAVSKTKPSPSNFLPLVVDYRQKSAAAGRIP 103
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
+ R + R+I R+LR + Q++ + +
Sbjct: 104 TNFFRR------ELGPSEKEILTSRLIDRSLRPLFPERFAYETQVVCNMLAVDGVNNPDV 157
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
+I A + G V A+ GM+ I++ E + +
Sbjct: 158 VSINAA-------------SAALALSDIPWNGPVGAVRLGMIDNEVIINPTRKELQSSIL 204
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ T +V ++G+A Q + L + ++ +
Sbjct: 205 NLVLSATRKNLVVMLEGNANN--ILQQDLLKAVKLGTKEVQQIVASIEK 251
>gi|215277019|ref|NP_001135843.1| polyribonucleotide nucleotidyltransferase 1, mitochondrial [Rattus
norvegicus]
gi|149044835|gb|EDL98021.1| polyribonucleotide nucleotidyltransferase 1 [Rattus norvegicus]
Length = 784
Score = 130 bits (326), Expect = 2e-28, Method: Composition-based stats.
Identities = 49/247 (19%), Positives = 86/247 (34%), Gaps = 17/247 (6%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE--------EKVPMWIRN 53
R GR +R IS + K GS L + G T +L T T + +++ I
Sbjct: 358 RCDGRDLTSLRNISCEVDMFKTLHGSALFQRGQTQVLCTVTFDSLESSIKSDQIITAING 417
Query: 54 TKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQII 113
K Y P +T K V+ R+ G +AL V+ I
Sbjct: 418 VKDKNFMLHYEFPPYATNETGKVTGVNRRELGHGAL----AEKALCPVIPKDFPF--TIR 471
Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP 173
+ +V++++G + A+ G +AL D + + V K + +
Sbjct: 472 VTSEVLESNGSSSMASACGGSLALMDAGVPISSAVAGVAVGLVTKSNP--EKGEIEDYRL 529
Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
+ D+ ED D+D T+ G I +Q + + A ++++
Sbjct: 530 LTDILGIEDYNGDMDFKIAGTNKG-ITALQADIKLPGVPVKIIMEAIQQATVAKREILQT 588
Query: 234 QKDVISN 240
IS
Sbjct: 589 MSKTISK 595
Score = 72.6 bits (176), Expect = 5e-11, Method: Composition-based stats.
Identities = 40/218 (18%), Positives = 76/218 (34%), Gaps = 25/218 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTA---TLEEKVPMWIRNTKHGWITAEYGMLP 67
R++ ++ ++++A+G +V+ GDT ++ TA T + A G +P
Sbjct: 54 RKLEISSGKLARFADGCAVVQSGDTAVMVTAVSKTKPSPSQFMPLVVDYRQKAAAAGRIP 113
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
+ R + R+I R++R + Q++ + +
Sbjct: 114 TNYLRREIGS------SDKEILTSRVIDRSIRPLFPAGYFYDTQVLCNLLAVDGINEPDI 167
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
AI GA A G V A+ GM+ G +V+ E S+ +
Sbjct: 168 LAINGASAA-------------LSLSDIPWNGPVGAVRIGMIDGECVVNPTRKEMSSSTL 214
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKD 225
+ IV ++ SAE Q F + +
Sbjct: 215 NLVVAGAPKSQIVMLEASAEN--ILQQDFCHAIKVGVK 250
>gi|52352385|gb|AAU43674.1| ribonuclease PH [uncultured archaeon GZfos26D8]
Length = 247
Score = 129 bits (325), Expect = 2e-28, Method: Composition-based stats.
Identities = 61/239 (25%), Positives = 105/239 (43%), Gaps = 23/239 (9%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKV-PMWIRNTKHGWIT 60
RL GR +++R I + V K A+GSC ++ GD ++ ++ P ++ K +
Sbjct: 13 RLDGRGFDELRPIKIEVGVLKRADGSCYLELGDNKVIAAVYGPREMHPRHAQDAKMAVVK 72
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
Y M P ST +R + RS EI ++ A V+ I + +++Q
Sbjct: 73 FRYNMAPFSTDDRKRPG-----PDRRSVEISKVCREAFDPVIMRELYPKTGIEVYVELLQ 127
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
+D GTRTA I A +AL D M+D V++I+ G + G ++DL+
Sbjct: 128 SDAGTRTAGINAASIALADAGIPMKDL-------------VSSIAVGKIGGEMVLDLNAA 174
Query: 181 EDSTIDVDANFVM-TDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
ED+ + D M + I +Q +++ F L LA + +LQ+ +
Sbjct: 175 EDNNGEADMPIAMIARTNTITALQMDGR---LTKEEFGRGLKLAMGACHQIYELQRTAL 230
>gi|62531249|gb|AAH92603.1| Pnpt1 protein [Rattus norvegicus]
Length = 452
Score = 129 bits (325), Expect = 2e-28, Method: Composition-based stats.
Identities = 49/247 (19%), Positives = 86/247 (34%), Gaps = 17/247 (6%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE--------EKVPMWIRN 53
R GR +R IS + K GS L + G T +L T T + +++ I
Sbjct: 26 RCDGRDLTSLRNISCEVDMFKTLHGSALFQRGQTQVLCTVTFDSLESSIKSDQIITAING 85
Query: 54 TKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQII 113
K Y P +T K V+ R+ G +AL V+ I
Sbjct: 86 VKDKNFMLHYEFPPYATNETGKVTGVNRRELGHGAL----AEKALCPVIPKDFPF--TIR 139
Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP 173
+ +V++++G + A+ G +AL D + + V K + +
Sbjct: 140 VTSEVLESNGSSSMASACGGSLALMDAGVPISSAVAGVAVGLVTKSNP--EKGEIEDYRL 197
Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
+ D+ ED D+D T+ G I +Q + + A ++++
Sbjct: 198 LTDILGIEDYNGDMDFKIAGTNKG-ITALQADIKLPGVPVKIIMEAIQQATVAKREILQT 256
Query: 234 QKDVISN 240
IS
Sbjct: 257 MSKTISK 263
>gi|126031138|pdb|2JE6|B Chain B, Structure Of A 9-Subunit Archaeal Exosome
gi|145579801|pdb|2JEA|B Chain B, Structure Of A 9-Subunit Archaeal Exosome Bound To Rna
gi|145579805|pdb|2JEB|B Chain B, Structure Of A 9-Subunit Archaeal Exosome Bound To Mn Ions
Length = 250
Score = 129 bits (325), Expect = 2e-28, Method: Composition-based stats.
Identities = 54/242 (22%), Positives = 101/242 (41%), Gaps = 23/242 (9%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKV-PMWIRNTKHGWIT 60
R GR+ +++R I + V K A+GS + + G+T + +++ P + +
Sbjct: 21 RTDGRKPDELRSIKIELGVLKNADGSAIFEMGNTKAIAAVYGPKEMHPRHLSLPDRAVLR 80
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
Y M P ST R + R E+ ++I AL S V + I + +++Q
Sbjct: 81 VRYHMTPFSTDERK-----NPAPSRREIELSKVIREALESAVLVELFPRTAIDVFTEILQ 135
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
AD G+R ++ A +AL D M D +A ++ G G I+DL+
Sbjct: 136 ADAGSRLVSLMAASLALADAGIPMRDL-------------IAGVAVGKADGVIILDLNET 182
Query: 181 EDSTIDVDANF-VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
E + D +M + Q + + + D F +LA I + L+++ +
Sbjct: 183 EAMWGEADMPIAMMPSLNQVTLFQLNG---SMTPDEFRQAFDLAVKGINIIYNLEREALK 239
Query: 240 NE 241
++
Sbjct: 240 SK 241
>gi|324505266|gb|ADY42265.1| Polyribonucleotide nucleotidyltransferase 1 [Ascaris suum]
Length = 746
Score = 129 bits (325), Expect = 2e-28, Method: Composition-based stats.
Identities = 41/245 (16%), Positives = 90/245 (36%), Gaps = 22/245 (8%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL--------EEKVPMWIR 52
+R GR N R I++ + K GS L + G T +L T T + + +
Sbjct: 343 VRCDGRALNDFRPINIEVDLYKKLHGSALFQRGQTQVLGTVTFDAPSAAFHPDSISQLLG 402
Query: 53 NTKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQI 112
+ Y P + ++ R+ G +AL+ ++ +
Sbjct: 403 AQRRKMFMLHYEFPPYAVNEISSSRGLNRRELGHGAL----AEKALQHLIP--ENFPYSV 456
Query: 113 IIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY 172
+ C V++++G + A++ +AL D ++ + + + +
Sbjct: 457 RLACQVLESNGSSSMASVCVGSLALLDAGVPLKAPAAGVAIGLITNSDAS-------QYK 509
Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
+ D+ ED D+D T +G + +Q + A S+ ++ ++ IA ++
Sbjct: 510 LLTDILGIEDYAGDMDFKIAGTSNG-LTAMQLDLKIAGISRQLLNEAISRGREGIAYVLS 568
Query: 233 LQKDV 237
L +
Sbjct: 569 LMEKA 573
Score = 78.7 bits (192), Expect = 7e-13, Method: Composition-based stats.
Identities = 34/235 (14%), Positives = 71/235 (30%), Gaps = 28/235 (11%)
Query: 13 EISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEK-----VPMWIRNTKHGWITAEYGML 66
+I ++++A+G+ +V GD +L TA E A G +
Sbjct: 43 DIQFETGHLARFADGAAVVSQGDNAILATAVGERDSSSSTTSFLPLTVDFKQSAAAVGRI 102
Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
P + R +Q R+I R++R + + Q+I + G
Sbjct: 103 PTNYLRR------EMQQSDADILASRIIDRSIRPLFPEQYRDATQVICKPLCLDETGDGV 156
Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
I A A + G V A+ ++ +V+ E
Sbjct: 157 VLGINAASTA-------------LAVSNIPWNGPVGAVRVAIIDDRVVVNPARNELKRAK 203
Query: 187 VDANFVMTDSGH-IVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
++ G ++ + A + + +A + + ++S
Sbjct: 204 LNMVLSGCGDGKRVLMIDMDACE--VNAVKLDECFEAGLEAVARITAAIEKIVSE 256
>gi|73969672|ref|XP_538497.2| PREDICTED: similar to polyribonucleotide nucleotidyltransferase 1
isoform 1 [Canis familiaris]
Length = 789
Score = 129 bits (325), Expect = 2e-28, Method: Composition-based stats.
Identities = 47/247 (19%), Positives = 85/247 (34%), Gaps = 17/247 (6%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE--------EKVPMWIRN 53
R GR +R I+ + K GS L + G T + T T + +++ I
Sbjct: 363 RCDGRDLTSLRNINCEVDLFKTLHGSALFQRGQTQVFCTVTFDSLESSIKSDRIITAING 422
Query: 54 TKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQII 113
K Y P +T K V+ R+ G +AL V+ I
Sbjct: 423 IKDKNFMLHYEFPPYATNEIGKVTGVNRRELGHGAL----AEKALYPVIPKDFPF--TIR 476
Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP 173
+ +V++++G + A+ G +AL D + + V K + +
Sbjct: 477 VTSEVLESNGSSSMASACGGSLALMDAGVPISSAVAGVAIGLVTKNNPD--KGEIEDYRL 534
Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
+ D+ ED D+D T G I +Q + + A +++++
Sbjct: 535 LTDILGIEDYNGDMDFKIAGTSKG-ITALQADIKLPGIPIKIVMEAIQQASVAKREILQI 593
Query: 234 QKDVISN 240
IS
Sbjct: 594 MNKTISK 600
Score = 53.7 bits (127), Expect = 2e-05, Method: Composition-based stats.
Identities = 37/199 (18%), Positives = 64/199 (32%), Gaps = 24/199 (12%)
Query: 30 VKFGDTHLLTTA---TLEEKVPMWIRNTKHGWITAEYGMLPRSTGNRVKREAVSGRQGGR 86
+K GDT ++ TA T + A G +P + R +
Sbjct: 78 LKSGDTAVMVTAVSKTKPSPSQFMPLVVDYRQKAAAAGRIPTNYLRR------EVGSSDK 131
Query: 87 SQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMED 146
R+I R++R + Q++ + + AI GA VA
Sbjct: 132 EVLTSRVIDRSIRPLFPAGYFYDTQVLCNLLAVDGVNEPDVLAINGASVA---------- 181
Query: 147 CSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSA 206
G + A+ GM+ G +V+ E S+ ++ IV ++ SA
Sbjct: 182 ---LSLSDIPWNGPIGAVRIGMIDGECVVNPTRKEMSSSTLNLVVAGAPKSQIVMMEASA 238
Query: 207 ERATFSQDHFFAMLNLAKD 225
E Q F + +
Sbjct: 239 EN--ILQQDFCHAIKVGVK 255
>gi|16768780|gb|AAL28609.1| LD03255p [Drosophila melanogaster]
Length = 720
Score = 129 bits (325), Expect = 2e-28, Method: Composition-based stats.
Identities = 46/249 (18%), Positives = 87/249 (34%), Gaps = 17/249 (6%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIR-------- 52
+R GR +Q+R IS + K GS L + G T + T +L+ +
Sbjct: 303 LRCDGRDYDQLRNISCQVDMYKPLHGSALFQRGQTQVFCTVSLDSQESAMKLDSLAALDS 362
Query: 53 -NTKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQ 111
K Y P +TG + V R+ G R+L +
Sbjct: 363 GGLKAKNFMLHYEFPPYATGEVGRIGPVGRREMGHGAL----AERSLLPTLPNDYPF--T 416
Query: 112 IIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG 171
+ + +V++++G + A++ G +AL D + + + V K + +
Sbjct: 417 VRLTSEVLESNGSSSMASVCGGSLALMDAGVPVSAPAAGVAIGLVTKFE-NDDTKHLQDY 475
Query: 172 YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231
+ D+ ED D+D T G +Q + L A D ++++
Sbjct: 476 RILTDILGIEDYMGDMDMKVAGTRKG-FTAIQADLKIPGIPLKVVMESLQKATDAKSNIL 534
Query: 232 KLQKDVISN 240
+ + I
Sbjct: 535 DIMSEAIRE 543
Score = 81.0 bits (198), Expect = 1e-13, Method: Composition-based stats.
Identities = 30/216 (13%), Positives = 64/216 (29%), Gaps = 17/216 (7%)
Query: 20 VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGNRVKREAV 79
++++A G+ + + GDT ++ TA + K +
Sbjct: 8 LARFANGTAVCQMGDTAVMVTAVAKAKPNPGQGFMPLVVDYRLKNAASGRIP--MNFMRR 65
Query: 80 SGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVALHD 139
+ R+I R+LR + Q++ + + A AI A +A
Sbjct: 66 ELGPSEKEILSARLIDRSLRPLFHKDYRTETQLVCNMLAMDAVHSPDVLAINAASMA--- 122
Query: 140 CLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHI 199
G + A+ G+ G +++ E T +D T +
Sbjct: 123 ----------LSLSDIPWNGPIGAVRVGLCDGEVLINPTRRELQTSQLDLVVSATKQNLV 172
Query: 200 VEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
V ++ + Q + +I +
Sbjct: 173 VMLE--GKGNVVLQQDLLKAIKQGTREAQFIIHEIE 206
>gi|297565611|ref|YP_003684583.1| ribonuclease PH [Meiothermus silvanus DSM 9946]
gi|296850060|gb|ADH63075.1| ribonuclease PH [Meiothermus silvanus DSM 9946]
Length = 235
Score = 129 bits (325), Expect = 2e-28, Method: Composition-based stats.
Identities = 85/238 (35%), Positives = 120/238 (50%), Gaps = 5/238 (2%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R GR +MR +S+ + YAEGS LV+ G T +L T +L + VP +R GW+
Sbjct: 3 RKDGRAPLEMRPLSIHTGYNLYAEGSALVELGHTKVLVTVSLTDGVPRHVRPR-EGWLMT 61
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
EY +LPRST R E + GR+ EIQR +GRA R+V+DLS+L + ++ID DV+QA
Sbjct: 62 EYNLLPRSTKERK--ERERQKLSGRTAEIQRFMGRAFRAVLDLSSLPGKTVVIDADVLQA 119
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
DGGTR A++ G + ALH L M L+ A ++DL + E
Sbjct: 120 DGGTRVASLIGGYAALHQALDKMVRS--GALDEWPLQEFAAISLGWFGEERILLDLTHVE 177
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
D D V T G ++EV G E Q + ML I +L++ +S
Sbjct: 178 DENAWADLTVVATQGGEVIEVHGGGEGRAVPQPVYKQMLETGLGFIPELVRRIHQALS 235
>gi|40217446|emb|CAE46379.1| ribonuclease PH [uncultured archaeon]
gi|268323829|emb|CBH37417.1| Probable exosome complex exonuclease 2 [uncultured archaeon]
Length = 242
Score = 129 bits (325), Expect = 2e-28, Method: Composition-based stats.
Identities = 66/242 (27%), Positives = 103/242 (42%), Gaps = 23/242 (9%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKV-PMWIRNTKHGWIT 60
RLSGR ++R I + V K A+GSC + GD L ++ P +N K +
Sbjct: 14 RLSGRGFEELRPIKIDVGVLKRADGSCYFELGDNKALAAVYGPREMHPRHFQNAKMAVVK 73
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
Y M P S +R + RSQEI + +AL V+ I + +V+Q
Sbjct: 74 YRYNMAPFSVDDRKRPG-----PDRRSQEISMVSRKALDPVILRELYPKTAIEVYVEVLQ 128
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
+D GTRTA I A VAL D M D V++++ G + G ++DLD
Sbjct: 129 SDAGTRTAGINAASVALADAGIPMRDL-------------VSSVAIGKIDGEVVLDLDAK 175
Query: 181 EDSTIDVDANFVM-TDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
ED+ + D M + I +Q ++ F L +A + +LQ+ +
Sbjct: 176 EDNFGEADMPIAMIARTNTITLLQMDGR---LKKEEFERGLKIAMSGCRKIYELQRAALV 232
Query: 240 NE 241
+
Sbjct: 233 EK 234
>gi|328949911|ref|YP_004367246.1| ribonuclease PH [Marinithermus hydrothermalis DSM 14884]
gi|328450235|gb|AEB11136.1| ribonuclease PH [Marinithermus hydrothermalis DSM 14884]
Length = 240
Score = 129 bits (325), Expect = 2e-28, Method: Composition-based stats.
Identities = 77/241 (31%), Positives = 117/241 (48%), Gaps = 4/241 (1%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R GR +MR + +T + +AEGS LV+ G T +L T ++ + VP + + GW+
Sbjct: 3 RKDGRGPLEMRPLVITPNYNAFAEGSALVELGQTRVLATVSITDGVPRHVHPRRSGWLMC 62
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
EY +LPR+T R + + GGR+QE+QR +GRA R+ +DL AL + +I+D DV+QA
Sbjct: 63 EYSLLPRATPTRT--QRERFKLGGRTQEVQRFLGRAFRAALDLKALAGKTVIVDADVLQA 120
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
DGGTR A+I G + AL L M L A ++DL E
Sbjct: 121 DGGTRVASILGGYAALFLALDRMVRD--GTLDDWPLLEFGAVSLGWFGEDRVLLDLTAIE 178
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
D D V T G ++E+ G E + + M+ + I L+ +S
Sbjct: 179 DENAWADLTVVATRDGELIEIHGGGEGRPVPRAVYERMVAAGLEVIPSLVAAVHRAVSKP 238
Query: 242 V 242
+
Sbjct: 239 L 239
>gi|52548652|gb|AAU82501.1| ribonuclease PH [uncultured archaeon GZfos18B6]
Length = 242
Score = 129 bits (325), Expect = 3e-28, Method: Composition-based stats.
Identities = 66/242 (27%), Positives = 104/242 (42%), Gaps = 23/242 (9%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKV-PMWIRNTKHGWIT 60
RLSGR ++R I + V K A+GSC + G+ + ++ P +N K +
Sbjct: 14 RLSGRGFEELRPIKIDVGVLKRADGSCYFELGNNKAIAAVYGPREMHPRHFQNAKMAVVK 73
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
Y M P S +R + RSQEI + +AL V+ I + +V+Q
Sbjct: 74 YRYNMAPFSVDDRKRPG-----PDRRSQEISMVSRKALDPVILRELYPKTAIEVYVEVLQ 128
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
+D GTRTA I A VAL D M+D V++++ G + G ++DLD
Sbjct: 129 SDAGTRTAGINAASVALADAGIPMKDL-------------VSSVAIGKIDGEVVLDLDAK 175
Query: 181 EDSTIDVDANFVM-TDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
ED+ + D M + I +Q ++ F L LA + +LQK +
Sbjct: 176 EDNFGEADMPIAMVARTNTITLLQMDGR---LKKEEFERGLQLAMTGCRKIYELQKAALV 232
Query: 240 NE 241
+
Sbjct: 233 EK 234
>gi|218884635|ref|YP_002429017.1| Probable exosome complex exonuclease 1 [Desulfurococcus
kamchatkensis 1221n]
gi|218766251|gb|ACL11650.1| Probable exosome complex exonuclease 1 [Desulfurococcus
kamchatkensis 1221n]
Length = 242
Score = 129 bits (324), Expect = 3e-28, Method: Composition-based stats.
Identities = 64/239 (26%), Positives = 104/239 (43%), Gaps = 23/239 (9%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKV-PMWIRNTKHGWI 59
+R+ GR+ ++R + + V K A GS LV++G+T L + P I +
Sbjct: 12 LRIDGRKPEELRPVRIALGVLKNANGSALVEYGNTKALAAVYGPREALPKHISLPDRAIL 71
Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119
Y M P ST R S R E+ ++I AL SVV S I + +++
Sbjct: 72 RVRYHMAPFSTTERK-----SPAPSRREIELSKVIREALESVVFTSQFPRASIDVFIEIL 126
Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179
QADGGTRT +T A +AL D M D ++ G + G ++D++
Sbjct: 127 QADGGTRTTGLTAASLALADAGIPMRDLVIG-------------VAVGKVDGVLVLDINE 173
Query: 180 GEDSTIDVDANF-VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED + D +M ++G IV +Q + + F L++A + + K K+
Sbjct: 174 LEDEYGEADLPVGIMPNTGEIVLLQLNG---VLTSGEFKQALDMAYKGVEQIYKTAKEA 229
>gi|307594960|ref|YP_003901277.1| exosome complex exonuclease 1 [Vulcanisaeta distributa DSM 14429]
gi|307550161|gb|ADN50226.1| exosome complex exonuclease 1 [Vulcanisaeta distributa DSM 14429]
Length = 246
Score = 129 bits (324), Expect = 3e-28, Method: Composition-based stats.
Identities = 68/241 (28%), Positives = 100/241 (41%), Gaps = 22/241 (9%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPM-WIRNTKHGWIT 60
R GR N+ R + + V K AEGS LV +G+T +L +VP + +
Sbjct: 15 RSDGRLPNEHRPVRMEVGVIKNAEGSALVAYGNTVILAAVYGPREVPQKHLELPDKAILR 74
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
Y M P ST K S R+ I ++I AL VV L I + +V+Q
Sbjct: 75 VRYHMAPFSTSEGRKSPTPSRREIE----ISKVIRTALEPVVILERFPRTTIDVYIEVLQ 130
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADG TR IT A +AL D M D +S G + G +VDL+
Sbjct: 131 ADGSTRVTGITAASLALADAGIPMRDLLVG-------------VSIGKVSGTIVVDLNQL 177
Query: 181 EDSTIDVDANF-VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
ED + D +M G I +Q E ++ L+LA + +L+K+ +
Sbjct: 178 EDQYGEGDMPLAIMYGRGLITLMQADGE---WTPTEVNQALDLAFKAAEQIYRLEKETLK 234
Query: 240 N 240
+
Sbjct: 235 S 235
>gi|149640866|ref|XP_001510386.1| PREDICTED: similar to polynucleotide phosphorylase-like protein
[Ornithorhynchus anatinus]
Length = 764
Score = 129 bits (324), Expect = 3e-28, Method: Composition-based stats.
Identities = 47/247 (19%), Positives = 87/247 (35%), Gaps = 17/247 (6%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE--------EKVPMWIRN 53
R GR +R+IS + K GS L + G T +L T T + + + +
Sbjct: 338 RCDGRDLTSLRDISCEVDMFKTLHGSALFQRGQTQVLCTVTFDSLESSMKSDLITSAVSG 397
Query: 54 TKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQII 113
K Y P +T K V+ R+ G +AL VV +
Sbjct: 398 VKDKNFMLHYEFPPYATNEIGKVTGVNRRELGHGAL----AEKALIPVVPKDFPF--TMR 451
Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP 173
+ +V++++G + A+ G +AL D + + + K + +
Sbjct: 452 VTSEVLESNGSSSMASACGGSLALMDAGVPVSSAVAGVAIGLITKN--NSEKEEIEDYRL 509
Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
+ D+ ED D+D T+ G I +Q + + A +++++
Sbjct: 510 MTDILGIEDYNGDMDFKMAGTNKG-ITALQADIKLPGIPIKIVMEAIQQATVAKREILQI 568
Query: 234 QKDVISN 240
IS
Sbjct: 569 MNRTISK 575
Score = 66.8 bits (161), Expect = 2e-09, Method: Composition-based stats.
Identities = 35/218 (16%), Positives = 75/218 (34%), Gaps = 25/218 (11%)
Query: 13 EISLTRR-VSKYAEGSCLVKFGDTHLLTTA---TLEEKVPMWIRNTKHGWITAEYGMLPR 68
++ ++ ++++A+G +V+ GDT ++ TA T + A G +P
Sbjct: 35 KLEISSGKLARFADGCAVVQLGDTSVMVTAVSKTKPSPSQFMPLVVDYRQKAAAAGRIPT 94
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
+ R + R+I R++R + QI+ + +
Sbjct: 95 NYLRR------ELGSSDKEILTSRIIDRSIRPLFPAGYFYDTQILCNLLAVDGVNEPDVL 148
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
AI GA A G V A+ G++ G +++ E ++ ++
Sbjct: 149 AINGASAA-------------LSLSDIPWNGPVGAVRVGLINGECVINPTRREMASSALN 195
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226
+V ++ +AE Q F + +
Sbjct: 196 LVVAGAPRSQVVMLEAAAENVL--QQDFSHAIKVGMKH 231
>gi|157133589|ref|XP_001656263.1| exosome complex exonuclease RRP41, putative [Aedes aegypti]
gi|157134369|ref|XP_001663263.1| exosome complex exonuclease RRP41, putative [Aedes aegypti]
gi|108870517|gb|EAT34742.1| exosome complex exonuclease RRP41, putative [Aedes aegypti]
gi|108870766|gb|EAT34991.1| exosome complex exonuclease RRP41, putative [Aedes aegypti]
Length = 245
Score = 129 bits (324), Expect = 3e-28, Method: Composition-based stats.
Identities = 54/242 (22%), Positives = 95/242 (39%), Gaps = 19/242 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+RL GR+ N++R I V +GS ++ G+T +L + P + + +
Sbjct: 9 LRLDGRRANELRRIQCKLGVFSQPDGSAYIEQGNTKVLAAVYGPHQAPAKKSSHEEVIVN 68
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
+Y M STG R + R +SQE+ + +AL + + QI + +V+
Sbjct: 69 CQYSMATFSTGERKR----RPRGDRKSQEMTIHLQQALSAAIKTELYPKSQIDVYIEVLM 124
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGG A++ A +AL D +++ S K + +S +
Sbjct: 125 ADGGNYCASVNAATLALIDAGICLKEYVCACTASLAGKIPLMDVS------------NLE 172
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
E S + SG I ++ S F DH +L A ++ K+ +
Sbjct: 173 EMSGGPTLTVASLPSSGKIAFMEMS---QRFHLDHLPKVLETALQGCREVQKIIDQAVRE 229
Query: 241 EV 242
V
Sbjct: 230 HV 231
>gi|222444527|ref|ZP_03607042.1| hypothetical protein METSMIALI_00139 [Methanobrevibacter smithii
DSM 2375]
gi|222434092|gb|EEE41257.1| hypothetical protein METSMIALI_00139 [Methanobrevibacter smithii
DSM 2375]
Length = 233
Score = 129 bits (324), Expect = 3e-28, Method: Composition-based stats.
Identities = 64/243 (26%), Positives = 103/243 (42%), Gaps = 23/243 (9%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKV-PMWIRNTKHGWI 59
+R GR+ N++R I + V + A+GS ++ G +L + + G I
Sbjct: 5 IREDGRKYNELRPIKIEAGVLERADGSAYLEVGGNKILVAVYGPRESYIRRLLEPNTGVI 64
Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119
Y M P S +R + RS EI ++ ALR + L + I +VI
Sbjct: 65 RCRYNMAPFSVDDRKRPG-----PDRRSSEISKITADALRPALMLENYPRSMVDIYIEVI 119
Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179
+A+GGTR A IT A VAL D M+D V + G + ++DL
Sbjct: 120 EAEGGTRCAGITAASVALVDAGIPMKDI-------------VVGCAAGKVNDKIVLDLSE 166
Query: 180 GEDSTIDVDANF-VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
ED D +M +G I +Q + SQ+ F +NLA + + ++QK+ +
Sbjct: 167 VEDKEGQADVPIAMMPRTGEITLLQSDGD---LSQEEFEEAINLAMEGCRKVNEIQKEAL 223
Query: 239 SNE 241
+
Sbjct: 224 MKK 226
>gi|119112780|ref|XP_318517.3| AGAP010791-PA [Anopheles gambiae str. PEST]
gi|116118616|gb|EAA13718.3| AGAP010791-PA [Anopheles gambiae str. PEST]
Length = 737
Score = 129 bits (324), Expect = 3e-28, Method: Composition-based stats.
Identities = 41/246 (16%), Positives = 85/246 (34%), Gaps = 16/246 (6%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE--------EKVPMWIRN 53
R GR + +R+IS + + K GS L + G T + T L+ + +
Sbjct: 305 RCDGRGLDDLRKISCSVNLHKPLHGSALFQRGQTQVFCTVALDSPESALRLDPIASLDSG 364
Query: 54 TKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQII 113
+ Y P +TG K + R+ G + L ++ +
Sbjct: 365 MRSKNFFLHYEFPPYATGETGKIGPIGRREIGHGAL----AEKGLVPIIPNEHPF--TVR 418
Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP 173
+ +V++++G + A + +AL D +++ + + + K +
Sbjct: 419 LTSEVLESNGSSSMATVCAGSMALMDAGVPVQEAAAGVAIGLITKYENNDTKH-LQDYCI 477
Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
+ DL ED D+D T G + +Q + L + + ++ L
Sbjct: 478 LTDLLGIEDYMGDMDMKVAGTRRG-MTAIQADIKVPGIPLKVVMEALQKSMEARFKILDL 536
Query: 234 QKDVIS 239
+ I
Sbjct: 537 MDETIG 542
Score = 76.8 bits (187), Expect = 2e-12, Method: Composition-based stats.
Identities = 34/225 (15%), Positives = 72/225 (32%), Gaps = 25/225 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATL---EEKVPMWIRNTKHGWITAEYGMLP 67
R + ++ +++A+G +V GDT ++ TA + + +A G +P
Sbjct: 1 RILKISSGKYARFADGCSVVTIGDTAVMVTAVAKQKSQNASFLPLVVDYRQKSAAAGRIP 60
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
+ R + R++ R++R + QI+ + I +
Sbjct: 61 TNFLRR------ELGPSEKEILSARLVDRSIRPLFPAEFRYDTQIVCNMLAIDSANPPDV 114
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
AI GA A G V A+ G++ I++ E +
Sbjct: 115 QAINGASAA-------------LALSDIPWNGPVGAVRVGLVDNEAIINPTRKEMQLSSL 161
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
D T +V ++ +++ + +I
Sbjct: 162 DLVVTATRQNLVVMLE--GRGNVVNENELRMAIKKGTKEAQLIIN 204
>gi|15678710|ref|NP_275826.1| exosome complex exonuclease Rrp41 [Methanothermobacter
thermautotrophicus str. Delta H]
gi|29336573|sp|O26779|ECX1_METTH RecName: Full=Probable exosome complex exonuclease 1
gi|295321490|pdb|2WNR|B Chain B, The Structure Of Methanothermobacter Thermautotrophicus
Exosome Core Assembly
gi|295321492|pdb|2WNR|D Chain D, The Structure Of Methanothermobacter Thermautotrophicus
Exosome Core Assembly
gi|295321494|pdb|2WNR|F Chain F, The Structure Of Methanothermobacter Thermautotrophicus
Exosome Core Assembly
gi|2621768|gb|AAB85188.1| ribonuclease PH [Methanothermobacter thermautotrophicus str. Delta
H]
Length = 240
Score = 129 bits (324), Expect = 3e-28, Method: Composition-based stats.
Identities = 57/242 (23%), Positives = 97/242 (40%), Gaps = 23/242 (9%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKV-PMWIRNTKHGWI 59
+R GR +++R + + + + A+GS ++FG +L + ++ I
Sbjct: 16 VREDGRAFDELRPLKIEAGILERADGSSYLEFGGNKILVAVYGPREAQIRKLQRPDRAVI 75
Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119
Y M P S R + RS EI ++ ALR + L I + +V+
Sbjct: 76 RCRYNMAPFSVEERKRPG-----PDRRSVEISKITAEALRPALILEKFPRSVIDVFIEVL 130
Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179
+A+GGTR A IT A VAL D M D V A + G + ++DL
Sbjct: 131 EAEGGTRCAGITAASVALADAGIPMRD-------------MVVACAAGKVGDQVVLDLSE 177
Query: 180 GEDSTIDVDANFVM-TDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
ED D + + I +Q + + F L+LA + + ++QK+ +
Sbjct: 178 EEDKEGQADVPVAILPRTREITLLQSDGN---LTPEEFERALDLAVEGCLRIHEVQKEAL 234
Query: 239 SN 240
Sbjct: 235 RK 236
>gi|302798082|ref|XP_002980801.1| hypothetical protein SELMODRAFT_113341 [Selaginella moellendorffii]
gi|300151340|gb|EFJ17986.1| hypothetical protein SELMODRAFT_113341 [Selaginella moellendorffii]
Length = 806
Score = 129 bits (324), Expect = 3e-28, Method: Composition-based stats.
Identities = 42/235 (17%), Positives = 83/235 (35%), Gaps = 7/235 (2%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTA-TLEEKVPMWIRNTKHGWI 59
+R GR + +R IS + + A GS + G+T L + + I
Sbjct: 419 VRSDGRGISDVRPISCSCNLLPRAHGSAIFTRGETQALVAVILGGDNMAQRIDGVTDADE 478
Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119
+ + + V G R R+I R+L + + ++ +
Sbjct: 479 VKRFYVQYVFPHSCVGEVGRIGPASRREIGHGRLIERSLEPIFPSK--FPYTVRVESTIT 536
Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179
+++G + A++ GA++AL D ++ + +L S G + D+
Sbjct: 537 ESNGSSSMASVCGAYLALCDAGVPVKCPIAGVAMGLILDPKEYGGSGG---PVILTDILG 593
Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
ED+ D+D + G I Q + + L+ AK ++K
Sbjct: 594 SEDACGDMDLKVAGSKDG-ITAFQMDLKVQGINLSILKRALSKAKTARCHILKEM 647
Score = 78.7 bits (192), Expect = 6e-13, Method: Composition-based stats.
Identities = 36/226 (15%), Positives = 69/226 (30%), Gaps = 19/226 (8%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRST 70
R+I L + + A G+ + G+T L TT + E T
Sbjct: 77 RQIVLETGSIGRQAGGAVTISDGETILYTTVCTSAEASEPSDFVPLYVHYHERYSAAGRT 136
Query: 71 GNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAI 130
G+ I R++ R LR ++ Q++ AI
Sbjct: 137 S--GGFNKREGKPRDSEVFISRLVDRPLRPMIPKGYFHEIQVLSWVLSFDGLHLPEPLAI 194
Query: 131 TGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDAN 190
T A AL + VA + G + G +++ E + +D
Sbjct: 195 TAAGAALALSDVPVLK-------------PVAGVRVGYINGKYVLNPTASEVTKSSLDMI 241
Query: 191 FVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
T G ++ ++ S+D + + + + K ++
Sbjct: 242 VAGTSDG-LLMIE--GYCNLLSEDELVKAVETGQRAVKIICKELEE 284
>gi|283781766|ref|YP_003372521.1| polyribonucleotide nucleotidyltransferase [Pirellula staleyi DSM
6068]
gi|283440219|gb|ADB18661.1| Polyribonucleotide nucleotidyltransferase [Pirellula staleyi DSM
6068]
Length = 744
Score = 129 bits (323), Expect = 4e-28, Method: Composition-based stats.
Identities = 44/242 (18%), Positives = 85/242 (35%), Gaps = 17/242 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
+R GR +R I V GS + + G+T L T TL +E+ + +
Sbjct: 312 IRSDGRDNRTLRNIECEVDVLPRVHGSAVFQRGETQALITITLGTAKDEQRVDGLFDEYA 371
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
+Y S G R+ G R++ V+ I +
Sbjct: 372 KKFMLDYNFPSFSVGEVRPIRGPGRREIGHGAL----AERSVNPVLPAPEEFPYTIRVIS 427
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
D+++++G + A++ GA + L + + + V + + + D
Sbjct: 428 DIMESNGSSSMASVCGATLGLMAAGVPISNPVAGISVGLVRESEQNWV--------LLTD 479
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T +G I +Q + S D A +++ +++
Sbjct: 480 IIGDEDHFGDMDFKIAGTQNG-ITGIQLDLKVEGISTDIIRATFEQSREARIQILRKMLT 538
Query: 237 VI 238
VI
Sbjct: 539 VI 540
Score = 95.7 bits (236), Expect = 5e-18, Method: Composition-based stats.
Identities = 40/226 (17%), Positives = 77/226 (34%), Gaps = 26/226 (11%)
Query: 15 SLTRRV-SKYAEGSCLVKFGDTHLL-TTATLE--EKVPMWIRNTKHGWITAEYGMLPRST 70
S +K A + L ++GDT ++ A+ + + + TA G P
Sbjct: 15 SFETGYLAKQAAAAVLCQYGDTVVMNAAASGPGRPGIDFFPLTCDYRERTAAAGKFPGGF 74
Query: 71 GNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAI 130
R GR + R++ R +R + QI A+
Sbjct: 75 IKR------EGRPTTKETLTSRLVDRPIRPLFPKGFRDEVQIQSIVLSSDKQNDGDVLAM 128
Query: 131 TGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDAN 190
GA A F + G +A++ G + G + + + T D+D
Sbjct: 129 NGAGCA-------------LFISALPFNGPIASVRVGRINGQFVAFPTHDDLETSDLDLI 175
Query: 191 FVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
++ + ++G A ++ F + A + I D+ LQ++
Sbjct: 176 VSGSER-EVAMIEGFARE--LPENDMFEAILFAHNVIRDICALQRE 218
>gi|288560609|ref|YP_003424095.1| exosome complex exonuclease Rrp41 [Methanobrevibacter ruminantium
M1]
gi|288543319|gb|ADC47203.1| exosome complex exonuclease Rrp41 [Methanobrevibacter ruminantium
M1]
Length = 236
Score = 129 bits (323), Expect = 4e-28, Method: Composition-based stats.
Identities = 60/241 (24%), Positives = 101/241 (41%), Gaps = 23/241 (9%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKV-PMWIRNTKHGWI 59
+R GR +++R I + V K A+GS ++ G +L + + + G I
Sbjct: 11 LRGDGRAYDELRPIKIEAGVLKRADGSAYLEVGGNKILASVYGPRESYIRRLLKPNTGVI 70
Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119
Y M P S +R + RS EI ++ ALR + L + + + +VI
Sbjct: 71 RVRYNMAPFSVDDRKRPG-----PDRRSTEISKIAADALRPALMLESFPRSMVDVSIEVI 125
Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179
+A+GGTR A IT A VAL D M+D V + G + ++DL
Sbjct: 126 EAEGGTRCAGITAAAVALADAGIPMKDI-------------VVGCAAGKVNDEIVLDLSE 172
Query: 180 GEDSTIDVDANF-VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
ED D +M +G I +Q +++ F L+LA + + ++Q + +
Sbjct: 173 KEDKEGQADVPIAIMPRTGEITLLQADGN---LTEEEFEEALDLAIEGCMKISEIQHEAL 229
Query: 239 S 239
Sbjct: 230 K 230
>gi|182414231|ref|YP_001819297.1| polyribonucleotide nucleotidyltransferase [Opitutus terrae PB90-1]
gi|257096699|sp|B1ZS98|PNP_OPITP RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|177841445|gb|ACB75697.1| Polyribonucleotide nucleotidyltransferase [Opitutus terrae PB90-1]
Length = 730
Score = 129 bits (323), Expect = 4e-28, Method: Composition-based stats.
Identities = 44/239 (18%), Positives = 80/239 (33%), Gaps = 13/239 (5%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+R GR + +R + V GS + + GDT + TL + G +
Sbjct: 315 VRADGRGQKDIRPLQAQVGVLPRVHGSAMFQRGDTQNIALTTLGPTKDAQDLDALTGGVK 374
Query: 61 A-----EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115
+ Y P S G + R+ G R+L V+ + I +
Sbjct: 375 SKSFLLHYNFPPFSVGETGRFTGPGRREIGHGAL----AERSLVPVLPPEDVFPYSIRVV 430
Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIV 175
+++ ++G T A+I G ++L D + A + I
Sbjct: 431 SEIMASNGSTSMASICGGCLSLMDAGVPIIAPVAGISCGL---MTQNASDGSIEKWVTIT 487
Query: 176 DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
D+ ED D+D T G I Q + + + A+D +++K+
Sbjct: 488 DILGEEDHFGDMDFKLAGTSKG-ITGFQLDLKINGLPFEIAKTAIMQARDARMEILKVM 545
Score = 94.5 bits (233), Expect = 1e-17, Method: Composition-based stats.
Identities = 38/232 (16%), Positives = 79/232 (34%), Gaps = 27/232 (11%)
Query: 14 ISLTRRVSKY-AEGSCLVKFGDTHLLTTATLEE----KVPMWIRNTKHGWITAEYGMLPR 68
I+ + A G+ V+ G+T++ TA + + + + A G P
Sbjct: 14 ITFSTGSIAQLANGAVNVQVGETNVFVTACVAQTTKPGQDWFPLTVDYREKYAAAGRFPG 73
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
R GR + R+ R R + L QII + +
Sbjct: 74 GYFKR------EGRPSEKEILTSRLCDRPCRPLFPEGFLNEVQIIGQLFSADLVNESDIS 127
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
+ GA A G +AA+ + G + + + +D
Sbjct: 128 MVNGASAA-------------LAISDIPWNGPIAAVRVAEIEGKFVANPTIDQMFASSLD 174
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
+V + ++ ++GSA++ ++ F L + I ++K K++++
Sbjct: 175 LIYVGNEKD-MLMIEGSADQ--IPEERFIEALAFGHESIQPILKAIKELVAQ 223
>gi|148284082|ref|YP_001248172.1| polynucleotide phosphorylase/polyadenylase [Orientia tsutsugamushi
str. Boryong]
gi|187610322|sp|A5CC62|PNP_ORITB RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|146739521|emb|CAM79228.1| polyribonucleotide nucleotidyltransferase [Orientia tsutsugamushi
str. Boryong]
Length = 740
Score = 129 bits (323), Expect = 4e-28, Method: Composition-based stats.
Identities = 48/242 (19%), Positives = 89/242 (36%), Gaps = 17/242 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ R +++R I + GS L GDT L T TL +E++ + +
Sbjct: 320 RIGNRAVDEIRPIICEAGLFNTVHGSALFTRGDTQSLATITLGSSTDEQIVEQLNKCERQ 379
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
+Y LP S G A S R+ G +A++ V+ + I I +
Sbjct: 380 NFLLDYIFLPYSVGEISPLRAASRREIGHGWL----AKKAIQLVIPSKDVFPYTIRIVSE 435
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ Q+DG + A + A ++L + ++ + + + D+
Sbjct: 436 ITQSDGSSSMATVCSASLSLMEAGVPIKTHVAGIAMGL--------VLGEGNKFEILSDI 487
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T +G I +Q + + + AK I ++ + +
Sbjct: 488 SGCEDHLGDMDFKVASTKNG-ITALQLDIKVQGINLSMIESTFRQAKIGINHILNVMNNT 546
Query: 238 IS 239
IS
Sbjct: 547 IS 548
Score = 98.0 bits (242), Expect = 9e-19, Method: Composition-based stats.
Identities = 32/225 (14%), Positives = 76/225 (33%), Gaps = 18/225 (8%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGN 72
+SL+ +++ A+G+ L G+T +L T ++ + G M +
Sbjct: 16 LSLSTGKIARNADGAVLASMGNTSVLCTVVFDKNTKKDMDFFPLGVYYR--EMAYAAGKI 73
Query: 73 RVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITG 132
G+ + R+I R++R + D + QII AI G
Sbjct: 74 PGGFIKKEGKFSEYEVLVSRLIDRSIRPLFDSNFRNDTQIICTVMSYDPRYSPDILAIIG 133
Query: 133 AWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFV 192
+ AL + + A G++ I++ +++ ++ V
Sbjct: 134 SSAALAISGIPIVK-------------PIGAARVGIVNDEFILNPVIHDNTGVNELDLVV 180
Query: 193 MTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
+ ++ A+ ++ A + + +I +++
Sbjct: 181 AATFDSVTMIE--AQACEIDEEKMLAAIEFGYKSLKPVINAIEEI 223
>gi|288869794|ref|ZP_06409500.1| exosome complex exonuclease 1 [Methanobrevibacter smithii DSM 2374]
gi|288860272|gb|EFC92570.1| exosome complex exonuclease 1 [Methanobrevibacter smithii DSM 2374]
Length = 234
Score = 129 bits (323), Expect = 4e-28, Method: Composition-based stats.
Identities = 64/243 (26%), Positives = 103/243 (42%), Gaps = 23/243 (9%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKV-PMWIRNTKHGWI 59
+R GR+ N++R I + V + A+GS ++ G +L + + G I
Sbjct: 6 IREDGRKYNELRPIKIEAGVLERADGSAYLEVGGNKILVAVYGPRESYIRRLLEPNTGVI 65
Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119
Y M P S +R + RS EI ++ ALR + L + I +VI
Sbjct: 66 RCRYNMAPFSVDDRKRPG-----PDRRSSEISKITADALRPALMLENYPRSMVDIYIEVI 120
Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179
+A+GGTR A IT A VAL D M+D V + G + ++DL
Sbjct: 121 EAEGGTRCAGITAASVALVDAGIPMKDI-------------VVGCAAGKVNDKIVLDLSE 167
Query: 180 GEDSTIDVDANF-VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
ED D +M +G I +Q + SQ+ F +NLA + + ++QK+ +
Sbjct: 168 VEDKEGQADVPIAMMPRTGEITLLQSDGD---LSQEEFEEAINLAMEGCRKVNEIQKEAL 224
Query: 239 SNE 241
+
Sbjct: 225 MKK 227
>gi|170070082|ref|XP_001869459.1| exosome complex exonuclease RRP41 [Culex quinquefasciatus]
gi|167866003|gb|EDS29386.1| exosome complex exonuclease RRP41 [Culex quinquefasciatus]
Length = 245
Score = 129 bits (323), Expect = 5e-28, Method: Composition-based stats.
Identities = 57/242 (23%), Positives = 97/242 (40%), Gaps = 19/242 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+RL GR+ N++R I V +GS V+ G+T +L + P N + +
Sbjct: 9 LRLDGRRSNELRRIQCKLGVFSQPDGSAYVEQGNTKVLAAVYGPHQAPAKKSNHEECVVN 68
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
+Y M STG R K R +SQE+ + +AL + + QI + +V+
Sbjct: 69 CQYSMATFSTGERKK----RPRGDRKSQEMTIHLQQALSAAIKTDLYPKSQIDVYIEVLM 124
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGG A++ A +AL D +++ S K + +S +
Sbjct: 125 ADGGNYCASVNAATLALIDAGICLKEYVCACTASLAGKVPLMDVS------------NLE 172
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
E S + +SG I ++ S F DH +L A ++ K+ + +
Sbjct: 173 EMSGGPTLTVASLPNSGKIAFMEMS---QRFHLDHLPNVLETALQGCREVQKIIDQAVRD 229
Query: 241 EV 242
V
Sbjct: 230 HV 231
>gi|332654600|ref|ZP_08420343.1| polyribonucleotide nucleotidyltransferase [Ruminococcaceae
bacterium D16]
gi|332516564|gb|EGJ46170.1| polyribonucleotide nucleotidyltransferase [Ruminococcaceae
bacterium D16]
Length = 716
Score = 128 bits (322), Expect = 5e-28, Method: Composition-based stats.
Identities = 44/237 (18%), Positives = 83/237 (35%), Gaps = 17/237 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +N++R ++ V GS L G T +L+ TL + I
Sbjct: 322 RVDGRAKNEIRPLAAEVGVLPRVHGSGLFTRGQTQVLSVCTLNTLAACQKLDTIWEEDEK 381
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + + R+ G RAL V+ I + +
Sbjct: 382 RYMHHYNFPPYSVGEARAPRSTNRREYGHGAL----AERALVPVLPSVEEFPYAIRVVSE 437
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
V+ ++G T +I G+ +AL D ++ + + + +D+
Sbjct: 438 VLSSNGSTSQGSICGSTLALMDAGVPIKAPVAGISCGLIQDDNGGFTT--------FIDI 489
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
ED ++D T +G I +Q + + + L + +D ++
Sbjct: 490 QGVEDFHGEMDFKVAGTKAG-ITAIQMDLKNDGLTHEIIKEALEITRDARYAILDEI 545
Score = 100 bits (248), Expect = 2e-19, Method: Composition-based stats.
Identities = 37/234 (15%), Positives = 79/234 (33%), Gaps = 27/234 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKHGWITAEYGML 66
R +++ V++ A S +VK+G+T +L T+ + + + + + G +
Sbjct: 23 RPLTIEVGKVAELASASAMVKYGETTVLVAVTVSPRPRDGIDFFPLSVEFEEKLYAVGRI 82
Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
P S R GR + R+I R +R + I + D
Sbjct: 83 PGSFMRR------EGRPSLPAVLASRLIDRPMRPLFPYDFRNDVCIQCTVMSVDYDCSPE 136
Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
AA+ G + G + + G G +++ + + T
Sbjct: 137 VAAMIG-------------ASACVSYSEIPFAGPIGCLEVGYCDGQIVLNPNQEQRKTSR 183
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
+D T +V ++ A+ + +A + A + I I +++
Sbjct: 184 MDVTVAATAE-KVVMIEAGADE--IPDEIMYAGIVKAHEEIKKQIDFINQIVAE 234
>gi|331082947|ref|ZP_08332067.1| polyribonucleotide nucleotidyltransferase [Lachnospiraceae
bacterium 6_1_63FAA]
gi|330399942|gb|EGG79600.1| polyribonucleotide nucleotidyltransferase [Lachnospiraceae
bacterium 6_1_63FAA]
Length = 697
Score = 128 bits (322), Expect = 5e-28, Method: Composition-based stats.
Identities = 37/240 (15%), Positives = 73/240 (30%), Gaps = 12/240 (5%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT--LEEKVPMWIRNTKHGWI 59
R GR ++R ++ + GS + G T + T T + +
Sbjct: 312 RPDGRAITEIRPLAAETDIIPRVHGSAMFTRGQTQ-ICTITTLAPLSEAQRLDGLDEFEV 370
Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119
+ Y V S G R + RAL V+ I +
Sbjct: 371 SKRYMHHYNFPSYSVGETKPSRGPGRREIGHGALAERALVPVIPGVEEFPYAIRTVSETF 430
Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179
+++G T A+I + ++L ++ V + D+
Sbjct: 431 ESNGSTSQASICASTMSLMAAGVPIKKPVAGISCGLV-------TGETDDDYLVLTDIQG 483
Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI-KLQKDVI 238
ED D+D T G I +Q + ++ + K+ ++ ++ + I
Sbjct: 484 LEDFFGDMDFKVAGTHDG-ITAIQMDIKIHGLTRQIIEEAIARTKEAREYILTEVMEKCI 542
Score = 101 bits (250), Expect = 1e-19, Method: Composition-based stats.
Identities = 38/234 (16%), Positives = 80/234 (34%), Gaps = 27/234 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----HGWITAEYGML 66
R +++ V+K A G+ L+++GDT +L+TAT +K I + G +
Sbjct: 12 RTLTVDIGRVAKQANGAALMRYGDTTVLSTATASDKPREGIDFFPLSVEYEEKMYAVGKI 71
Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
P R G+ + R+I R +R + + + ++
Sbjct: 72 PGGFNKR------EGKASEHAILTSRVIDRPMRPLFPKDYRNDVTLNNMVMAVDSECNPE 125
Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
A+ G+ +A G AA GM+ G +V+ + D
Sbjct: 126 VVAMLGSSIATC-------------ISDIPFDGPCAATQIGMVNGELVVNPSLAQKEISD 172
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
+ T ++ ++ A + + A + ++I +++
Sbjct: 173 LQLTVASTRE-KVIMIEAGANE--IPEAKMIEAIFKAHEVNQEIIAFIDKIVAE 223
>gi|52549528|gb|AAU83377.1| ribonuclease PH [uncultured archaeon GZfos27G5]
Length = 247
Score = 128 bits (322), Expect = 5e-28, Method: Composition-based stats.
Identities = 61/239 (25%), Positives = 104/239 (43%), Gaps = 23/239 (9%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKV-PMWIRNTKHGWIT 60
R GR +++R I + V K A+GSC ++ G+ ++ ++ P ++ K I
Sbjct: 13 RSDGRGFDELRPIKIEVGVLKRADGSCYLELGNNKVIAAVYGPREMHPRHAQDAKMAVIK 72
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
Y M P ST +R + RS EI ++ A V+ I + +++Q
Sbjct: 73 FRYNMAPFSTDDRKRPG-----PDRRSVEISKVCREAFDPVIMRELYPKMGIEVYVELLQ 127
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
+D GTRTA I A +AL D M+D V++I+ G + G ++DL+
Sbjct: 128 SDAGTRTAGINAASIALADAGIPMKDL-------------VSSIAVGKINGEVVLDLNAA 174
Query: 181 EDSTIDVDANFVM-TDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
ED+ + D M + I +Q +Q+ F L LA + +LQ+ +
Sbjct: 175 EDNNGEADMPIAMIARTNTITALQMDGR---MTQEEFGRGLKLAMGACHQIYELQRAAL 230
>gi|325265390|ref|ZP_08132114.1| polyribonucleotide nucleotidyltransferase [Clostridium sp. D5]
gi|324029391|gb|EGB90682.1| polyribonucleotide nucleotidyltransferase [Clostridium sp. D5]
Length = 695
Score = 128 bits (322), Expect = 5e-28, Method: Composition-based stats.
Identities = 40/242 (16%), Positives = 73/242 (30%), Gaps = 12/242 (4%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT--LEEKVPMWIRNTKHGWI 59
R GR +Q+R +S + GS + G T + T T I
Sbjct: 312 RPDGRAIDQIRALSAETDLIPRVHGSAMFTRGQTQ-ICTVTTLAPLSDAQRIDGLDEAET 370
Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119
+ Y V S G R + RAL V+ + I +
Sbjct: 371 SKRYMHHYNFPSYSVGETRPSRGPGRREIGHGALAERALIPVLPSESEFPYAIRTVSETF 430
Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179
+++G T A+I + ++L ++ V + D+
Sbjct: 431 ESNGSTSQASICASSMSLMAAGVPIKAAVAGISAGLV-------TGDTDDDYLVLTDIQG 483
Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI-KLQKDVI 238
ED D+D T G I +Q + ++ + K ++ ++ I
Sbjct: 484 LEDFFGDMDFKVAGTHKG-ITAIQMDIKIHGLTRPIIEEAIATTKKARTFILDEVMNKTI 542
Query: 239 SN 240
+
Sbjct: 543 AE 544
Score = 93.8 bits (231), Expect = 2e-17, Method: Composition-based stats.
Identities = 37/234 (15%), Positives = 75/234 (32%), Gaps = 27/234 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----HGWITAEYGML 66
R + + V+K A G+ L+ +GDT +L TAT EK I + G +
Sbjct: 12 RTLRVDVGRVAKQANGAALMHYGDTTVLCTATASEKPREGIDFFPLSVEYNERLYSVGKI 71
Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
P R G+ + R+I R +R + + + D
Sbjct: 72 PGGFNKR------EGKASENAVLTCRVIDRPMRPLFPKDYRNDVTLENLVMSVDQDCSPE 125
Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
A+ GA +A G ++ G++ G + + + D
Sbjct: 126 LTAMLGAAIAT-------------SISDIPFDGPISTTQVGLVDGEFVFNPTAAQKDISD 172
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
+ T ++ ++ A + + A + +I + +++
Sbjct: 173 MALTVASTKE-KVIMIEAGANEVP--EAQMIDAIFAAHELNQKVIAFIETIVAE 223
>gi|302756855|ref|XP_002961851.1| hypothetical protein SELMODRAFT_77425 [Selaginella moellendorffii]
gi|300170510|gb|EFJ37111.1| hypothetical protein SELMODRAFT_77425 [Selaginella moellendorffii]
Length = 808
Score = 128 bits (322), Expect = 5e-28, Method: Composition-based stats.
Identities = 42/235 (17%), Positives = 83/235 (35%), Gaps = 7/235 (2%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTA-TLEEKVPMWIRNTKHGWI 59
+R GR + +R IS + + A GS + G+T L + + I
Sbjct: 419 VRSDGRGISDVRPISCSCNLLPRAHGSAIFTRGETQALVAVILGGDNMAQRIDGVTDADE 478
Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119
+ + + V G R R+I R+L + + ++ +
Sbjct: 479 VKRFYVQYVFPHSCVGEVGRIGPASRREIGHGRLIERSLEPIFPSK--FPYTVRVESTIT 536
Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179
+++G + A++ GA++AL D ++ + +L S G + D+
Sbjct: 537 ESNGSSSMASVCGAYLALCDAGVPVKCPIAGVAMGLILDPKEYGGSGG---PVILTDILG 593
Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
ED+ D+D + G I Q + + L+ AK ++K
Sbjct: 594 SEDACGDMDLKVAGSKEG-ITAFQMDLKVQGINLSILKRALSKAKTARCHILKEM 647
Score = 78.3 bits (191), Expect = 9e-13, Method: Composition-based stats.
Identities = 36/226 (15%), Positives = 69/226 (30%), Gaps = 19/226 (8%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRST 70
R+I L + + A G+ + G+T L TT + E T
Sbjct: 77 RQIVLETGSIGRQAGGAVTISDGETILYTTVCTSAEASEPSDFVPLYVHYHERYSAAGRT 136
Query: 71 GNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAI 130
G+ I R++ R LR ++ Q++ AI
Sbjct: 137 S--GGFNKREGKPRDSEVFISRLVDRPLRPMIPKGYFHEIQVLSWVLSYDGSHLPEPLAI 194
Query: 131 TGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDAN 190
T A AL + VA + G + G +++ E + +D
Sbjct: 195 TAAGAALALSDVPVLK-------------PVAGVRVGYINGKYVLNPTASEVTKSSLDMI 241
Query: 191 FVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
T G ++ ++ S+D + + + + K ++
Sbjct: 242 MAGTSDG-LLMIE--GYCNLLSEDELVKAVETGQRAVKIICKELEE 284
>gi|304314830|ref|YP_003849977.1| exosome RNA binding protein [Methanothermobacter marburgensis str.
Marburg]
gi|302588289|gb|ADL58664.1| predicted exosome RNA binding protein [Methanothermobacter
marburgensis str. Marburg]
Length = 231
Score = 128 bits (322), Expect = 5e-28, Method: Composition-based stats.
Identities = 59/242 (24%), Positives = 97/242 (40%), Gaps = 23/242 (9%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKV-PMWIRNTKHGWI 59
+R GR +++R + + + + A+GS ++FG +L + ++ I
Sbjct: 7 VREDGRAFDELRPLRIEAGILERADGSSYLEFGGNKILVAVYGPREAQIRKLQRPDRAVI 66
Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119
Y M P S R + RS EI ++ ALR + L I + +V+
Sbjct: 67 RCRYNMAPFSVEERKRPG-----PDRRSVEISKITAEALRPALILEKFPRSVIDVFIEVL 121
Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179
+A+GGTR A IT A VAL D M D V A + G + ++DL
Sbjct: 122 EAEGGTRCAGITAASVALADAGIPMRD-------------MVVACAAGKVNDQVVLDLSE 168
Query: 180 GEDSTIDVDANFVM-TDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
ED D + + I +Q S D F L+LA + + ++QK+ +
Sbjct: 169 EEDKAGQADVPVAILPRTREITLLQSDGN---LSDDEFERALDLAVEGCLRIHEVQKEAL 225
Query: 239 SN 240
Sbjct: 226 RK 227
>gi|148642302|ref|YP_001272815.1| exosome complex exonuclease Rrp41 [Methanobrevibacter smithii ATCC
35061]
gi|148551319|gb|ABQ86447.1| ribonuclease PH, Rph [Methanobrevibacter smithii ATCC 35061]
Length = 234
Score = 128 bits (322), Expect = 6e-28, Method: Composition-based stats.
Identities = 65/243 (26%), Positives = 103/243 (42%), Gaps = 23/243 (9%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKV-PMWIRNTKHGWI 59
+R GR+ N++R I + V + A+GS ++ G +L + + G I
Sbjct: 6 IREDGRKYNELRPIKIEAGVLERADGSAYLEVGGNKILVAVYGPRESYIRRLLEPNTGVI 65
Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119
Y M P S +R + RS EI ++ ALR + L + I +VI
Sbjct: 66 RCRYNMAPFSVDDRKRPG-----PDRRSSEISKITADALRPALMLENYPRSMVDIYIEVI 120
Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179
+A+GGTR A IT A VAL D M+D V + G + I+DL
Sbjct: 121 EAEGGTRCAGITAASVALVDAGIPMKDI-------------VVGCAAGKVNDEIILDLSE 167
Query: 180 GEDSTIDVDANF-VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
ED D +M +G I +Q + SQ+ F +NLA + + ++QK+ +
Sbjct: 168 VEDKEGQADVPIAMMPRTGEITLLQSDGD---LSQEEFEEAINLAMEGCRKVNEIQKEAL 224
Query: 239 SNE 241
+
Sbjct: 225 MKK 227
>gi|313619127|gb|EFR90919.1| polyribonucleotide nucleotidyltransferase [Listeria innocua FSL
S4-378]
Length = 520
Score = 128 bits (322), Expect = 6e-28, Method: Composition-based stats.
Identities = 46/219 (21%), Positives = 80/219 (36%), Gaps = 18/219 (8%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
+R GR+ N++R +S + GS L G T L+ TL E ++ + ++
Sbjct: 316 IRPDGRKVNEIRPLSSEVGMLPRVHGSGLFTRGQTQALSVCTLAPLREHQIIDGLGTEEY 375
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y S G R A R+ G RAL+ V+ I +
Sbjct: 376 KRFMHHYNFPQFSVGETGPRRAPGRREIGHGALG----ERALQYVIPSEEEFPYTIRLVS 431
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V++++G + A+I G+ +A+ D ++ + V G I
Sbjct: 432 EVLESNGSSSQASICGSTLAMLDAGVPIKAPVAGIAMGLVKLGDDYTILSD--------- 482
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDH 215
+ ED D+D T G I +Q + S+
Sbjct: 483 IQGMEDHFGDMDFKVAGTKDG-ITALQMDIKIDGLSRQI 520
Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats.
Identities = 44/230 (19%), Positives = 83/230 (36%), Gaps = 26/230 (11%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKV---PMWIRNTKHGWITAEYGMLPRS 69
+S+ ++K A G+ L+++GDT +LT A +K + + G +P
Sbjct: 16 LSVEVGQLAKQASGAALIRYGDTVVLTAAVGSKKPRPGDFFPLTVNYEEKMYSVGKVPGG 75
Query: 70 TGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAA 129
R GR R+ R+I R +R + QI + D AA
Sbjct: 76 FLKR------EGRPSDRATLTARLIDRPIRPLFAEGFRNEVQITSTVFSVDQDCSPEMAA 129
Query: 130 ITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDA 189
+ G+ VA +G +A + G + G +++ + D+
Sbjct: 130 MLGSSVA-------------LVISDIPFEGPIAGVDVGRIDGKYVINPTIEQAEKSDISL 176
Query: 190 NFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
T I V+ A+ S++ + + I L + Q+ +I+
Sbjct: 177 TVAGTYD-AINMVEAGAKE--VSEEAMLEAIMFGHEEIKRLCEFQQQIIA 223
>gi|260589519|ref|ZP_05855432.1| polyribonucleotide nucleotidyltransferase [Blautia hansenii DSM
20583]
gi|260540087|gb|EEX20656.1| polyribonucleotide nucleotidyltransferase [Blautia hansenii DSM
20583]
Length = 691
Score = 128 bits (322), Expect = 6e-28, Method: Composition-based stats.
Identities = 37/240 (15%), Positives = 73/240 (30%), Gaps = 12/240 (5%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT--LEEKVPMWIRNTKHGWI 59
R GR ++R ++ + GS + G T + T T + +
Sbjct: 306 RPDGRAITEIRPLAAETDIIPRVHGSAMFTRGQTQ-ICTITTLAPLSEAQRLDGLDEFEV 364
Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119
+ Y V S G R + RAL V+ I +
Sbjct: 365 SKRYMHHYNFPSYSVGETKPSRGPGRREIGHGALAERALVPVIPGVEEFPYAIRTVSETF 424
Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179
+++G T A+I + ++L ++ V + D+
Sbjct: 425 ESNGSTSQASICASTMSLMAAGVPIKKPVAGISCGLV-------TGETDDDYLVLTDIQG 477
Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI-KLQKDVI 238
ED D+D T G I +Q + ++ + K+ ++ ++ + I
Sbjct: 478 LEDFFGDMDFKVAGTHDG-ITAIQMDIKIHGLTRQIIEEAIARTKEAREYILTEVMEKCI 536
Score = 98.8 bits (244), Expect = 6e-19, Method: Composition-based stats.
Identities = 38/234 (16%), Positives = 80/234 (34%), Gaps = 27/234 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----HGWITAEYGML 66
R +++ V+K A G+ L+++GDT +L+TAT +K I + G +
Sbjct: 6 RILTVDIGRVAKQANGAALMRYGDTTVLSTATASDKPREGIDFFPLSVEYEEKMYAVGKI 65
Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
P R G+ + R+I R +R + + + ++
Sbjct: 66 PGGFNKR------EGKASEHAILTSRVIDRPMRPLFPKDYRNDVTLNNMVMAVDSECNPE 119
Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
A+ G+ +A G AA GM+ G +V+ + D
Sbjct: 120 VVAMLGSSIATC-------------ISDIPFDGPCAATQIGMVNGELVVNPSLAQKEISD 166
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
+ T ++ ++ A + + A + ++I +++
Sbjct: 167 LQLTVASTRE-KVIMIEAGANE--IPEAKMIEAIFKAHEVNQEIIAFIDKIVAE 217
>gi|320101499|ref|YP_004177091.1| ribosomal RNA-processing protein RRP41/SKI6 [Desulfurococcus
mucosus DSM 2162]
gi|319753851|gb|ADV65609.1| ribosomal RNA-processing protein RRP41/SKI6 [Desulfurococcus
mucosus DSM 2162]
Length = 243
Score = 128 bits (322), Expect = 6e-28, Method: Composition-based stats.
Identities = 60/239 (25%), Positives = 105/239 (43%), Gaps = 23/239 (9%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEK-VPMWIRNTKHGWI 59
+R+ GR+ +++R + + V K A GS LV++G+T L + +P I +
Sbjct: 13 LRVDGRRPDELRPVRIAIGVLKNANGSALVEYGNTKALAAVYGPREAMPKHISLPDRAVL 72
Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119
Y M P ST R S R E+ ++I AL SVV + I + +++
Sbjct: 73 RVRYHMAPFSTSERK-----SPAPSRREIELSKVIREALESVVFTTQYPRASIDVFIEIL 127
Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179
QADGGTRTA +T A +AL D M+D + + G ++D++
Sbjct: 128 QADGGTRTAGLTAASLALADAGIPMKDLVIGVAVG-------------KVGGVLVLDINE 174
Query: 180 GEDSTIDVDANFVM-TDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED + D + ++ IV +Q + + + F + +A + + K+ K+
Sbjct: 175 LEDEYGEADLPVGIAPNTNEIVLLQLNG---VLTPEEFKQAMEMAFKGVEQIYKVAKEA 230
>gi|189184267|ref|YP_001938052.1| polynucleotide phosphorylase/polyadenylase [Orientia tsutsugamushi
str. Ikeda]
gi|226702671|sp|B3CTX1|PNP_ORITI RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|189181038|dbj|BAG40818.1| polyribonucleotide nucleotidyltransferase [Orientia tsutsugamushi
str. Ikeda]
Length = 736
Score = 128 bits (321), Expect = 6e-28, Method: Composition-based stats.
Identities = 48/242 (19%), Positives = 89/242 (36%), Gaps = 17/242 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ R +++R I + GS L GDT L T TL +E++ + +
Sbjct: 316 RIGNRAIDEIRPIICEAGLFNTVHGSALFTRGDTQSLATITLGSSTDEQIVEQLNKCERQ 375
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
+Y LP S G A S R+ G +A++ V+ + I I +
Sbjct: 376 NFLLDYIFLPYSVGEISPLRAASRREIGHGWL----AKKAIQLVIPSKDVFPYTIRIVSE 431
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ Q+DG + A + A ++L + ++ + + + D+
Sbjct: 432 ITQSDGSSSMATVCSASLSLMEAGVPIKTHVAGIAMGL--------VLGEGNKFEILSDI 483
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T +G I +Q + + + AK I ++ + +
Sbjct: 484 SGCEDHLGDMDFKVASTKNG-ITALQLDIKVQGINLSMIESTFRQAKIGINHILNVMNNT 542
Query: 238 IS 239
IS
Sbjct: 543 IS 544
Score = 96.8 bits (239), Expect = 2e-18, Method: Composition-based stats.
Identities = 32/225 (14%), Positives = 76/225 (33%), Gaps = 18/225 (8%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGN 72
+SL+ +++ A+G+ L G+T +L T ++ I G M +
Sbjct: 16 LSLSTGKIARNADGAVLASMGNTSVLCTVVFDKNTKKDIDFFPLGVYYR--EMAYAAGKI 73
Query: 73 RVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITG 132
G+ + R+I R++R + D + Q+I AI G
Sbjct: 74 PGGFIKKEGKFSEYEVLVSRLIDRSIRPLFDSNFRNDTQVICTVMSYDPRYSPDILAIIG 133
Query: 133 AWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFV 192
+ AL + + A G++ I++ +++ ++ V
Sbjct: 134 SSAALAISGIPIVK-------------PIGAARVGIVNDEFILNPVIHDNTGVNELDLVV 180
Query: 193 MTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
+ ++ A+ ++ A + + +I +++
Sbjct: 181 AATFDSVTMIE--AQACEIDEEKMLAAIEFGYKSLKPVINAIEEI 223
>gi|293393625|ref|ZP_06637935.1| tRNA nucleotidyltransferase [Serratia odorifera DSM 4582]
gi|291423960|gb|EFE97179.1| tRNA nucleotidyltransferase [Serratia odorifera DSM 4582]
Length = 211
Score = 128 bits (321), Expect = 6e-28, Method: Composition-based stats.
Identities = 107/212 (50%), Positives = 143/212 (67%), Gaps = 2/212 (0%)
Query: 29 LVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQ 88
LV+FGDT +L TAT+E+ VP +++ GWITAEYGMLPRST +R REA G+QGGR+
Sbjct: 2 LVEFGDTKVLCTATVEDGVPRFLKGQGQGWITAEYGMLPRSTHSRNAREAAKGKQGGRTL 61
Query: 89 EIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCS 148
EIQR+I R+LR+ VDL LG I +DCDV+QADGGTRTA+ITGA VAL D L +
Sbjct: 62 EIQRLIARSLRAAVDLKKLGEFTITLDCDVLQADGGTRTASITGACVALADALNALVAA- 120
Query: 149 NKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAER 208
+ +KG VAA+S G++ G + DL+Y EDS + D N VM + G ++EVQG+AE
Sbjct: 121 -GKLKANPMKGMVAAVSVGIVNGEALCDLEYVEDSAAETDMNVVMMEDGRMIEVQGTAEG 179
Query: 209 ATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
FS D A+L LA+ I + + QK +++
Sbjct: 180 EPFSHDELLALLALARGGIETIFQAQKAALAD 211
>gi|149200561|ref|ZP_01877570.1| polynucleotide phosphorylase/polyadenylase [Lentisphaera araneosa
HTCC2155]
gi|149136358|gb|EDM24802.1| polynucleotide phosphorylase/polyadenylase [Lentisphaera araneosa
HTCC2155]
Length = 696
Score = 128 bits (321), Expect = 6e-28, Method: Composition-based stats.
Identities = 50/243 (20%), Positives = 83/243 (34%), Gaps = 20/243 (8%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEE----KVPMWIRNTKHG 57
R GR +R +S + GS L G+T L T TL + + IR
Sbjct: 315 RADGRGAEDLRPLSAENSLMPRTHGSALFARGETQALVTVTLGDAKAAQSAETIRGRYDK 374
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y S G + R+ G RAL ++ + + +
Sbjct: 375 TFYLHYNFPNFSVGECGRIMGAGNREIGHGNL----AERALAKMMPADY--PYTVRVISE 428
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
V+ ++G T A+I G +AL D ++ + V + + I D+
Sbjct: 429 VMGSNGSTSMASICGGSLALMDAGVPLKKAVAGISVGLVQEADKYVM---------ITDI 479
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T G I Q + A S D + + K D++ +
Sbjct: 480 LGSEDHYGDMDFKVAGTRDG-ITAFQLDLKIAGVSLDMMYEAMLRDKTARMDILDVMDGC 538
Query: 238 ISN 240
+S+
Sbjct: 539 LSS 541
Score = 88.4 bits (217), Expect = 7e-16, Method: Composition-based stats.
Identities = 39/231 (16%), Positives = 72/231 (31%), Gaps = 20/231 (8%)
Query: 7 QENQMREISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGM 65
R I++ ++ A + V G+T +L TA +Y
Sbjct: 10 DLGDNRPITIETGKMALLANAAVTVTQGETVVLVTACSSAPRAGIDFFPLMVAYREKYSA 69
Query: 66 LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125
+ G +KR R RM R LR + QI
Sbjct: 70 AGKFLGGFMKR---ENRPSEHEILTSRMTDRPLRPLFPKGFYHEVQIQAIVLSYDKVNDP 126
Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185
T A+ G+ AL +G + A+ G + G + + +
Sbjct: 127 DTLAMLGSSAALM-------------LSDLPFQGPLGALRVGQVDGEFVANPTTEQMEAS 173
Query: 186 DVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
++ + T G + ++G + S++ F L A ++ + K Q +
Sbjct: 174 ALELIYSGTP-GKTIMIEGDCDE--LSEERLFEALKYADSKVEVMAKAQLE 221
>gi|331084721|ref|ZP_08333809.1| polyribonucleotide nucleotidyltransferase [Lachnospiraceae
bacterium 9_1_43BFAA]
gi|330410815|gb|EGG90237.1| polyribonucleotide nucleotidyltransferase [Lachnospiraceae
bacterium 9_1_43BFAA]
Length = 721
Score = 128 bits (321), Expect = 6e-28, Method: Composition-based stats.
Identities = 39/242 (16%), Positives = 73/242 (30%), Gaps = 12/242 (4%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT--LEEKVPMWIRNTKHGWI 59
R GR +Q+R ++ + GS + G T + T T I
Sbjct: 338 RPDGRAIDQIRPLAAETDLIPRVHGSAMFTRGQTQ-ICTITTLAPLSEAQRIDGLDEAET 396
Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119
+ Y V S G R + RAL V+ A I +
Sbjct: 397 SKRYMHHYNFPSYSVGETKPSRGPGRREIGHGALAERALVPVLPSEAEFPYAIRTVSETF 456
Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179
+++G T A++ + ++L ++ V + D+
Sbjct: 457 ESNGSTSQASVCASSMSLMAAGVPIKSAVAGISAGLV-------TGETDDDYIVLTDIQG 509
Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI-KLQKDVI 238
ED D+D T G I +Q + ++ + K ++ ++ I
Sbjct: 510 LEDFFGDMDFKVAGTHKG-ITAIQMDIKIHGLTRPIIEEAIACTKKARTYILDEVMSKAI 568
Query: 239 SN 240
+
Sbjct: 569 AE 570
Score = 92.6 bits (228), Expect = 4e-17, Method: Composition-based stats.
Identities = 35/234 (14%), Positives = 77/234 (32%), Gaps = 27/234 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----HGWITAEYGML 66
R + + V+ A G+ L+ +G+T +L+TAT EK I + G +
Sbjct: 38 RTLRVDVGRVAAQANGAALMHYGETVVLSTATASEKPREGIDFFPLSVEYEEKLYAVGKI 97
Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
P R G+ + R+I R +R + + + D
Sbjct: 98 PGGFNKR------EGKASENAILTSRVIDRPMRPLFPKDYRNDVTLNNLVLSVDPDCSPE 151
Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
A+ G+ +A G + G++ G + + + + + D
Sbjct: 152 LTAMLGSAIAT-------------AISDIPFDGPTSTTQVGLIDGEFVFNPNAAQRAVSD 198
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
+ T ++ ++ A + + A + ++IK +++
Sbjct: 199 LQLTVASTRD-KVIMIEAGANEVP--EAKMIEAIFAAHEVNQEVIKFIDTIVAE 249
>gi|325661686|ref|ZP_08150309.1| polyribonucleotide nucleotidyltransferase [Lachnospiraceae
bacterium 4_1_37FAA]
gi|325471939|gb|EGC75154.1| polyribonucleotide nucleotidyltransferase [Lachnospiraceae
bacterium 4_1_37FAA]
Length = 721
Score = 128 bits (321), Expect = 7e-28, Method: Composition-based stats.
Identities = 39/242 (16%), Positives = 73/242 (30%), Gaps = 12/242 (4%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT--LEEKVPMWIRNTKHGWI 59
R GR +Q+R ++ + GS + G T + T T I
Sbjct: 338 RPDGRAIDQIRPLAAETDLIPRVHGSAMFTRGQTQ-ICTITTLAPLSEAQRIDGLDEAET 396
Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119
+ Y V S G R + RAL V+ A I +
Sbjct: 397 SKRYMHHYNFPSYSVGETKPSRGPGRREIGHGALAERALVPVLPSEAEFPYAIRTVSETF 456
Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179
+++G T A++ + ++L ++ V + D+
Sbjct: 457 ESNGSTSQASVCASSMSLMAAGVPIKSAVAGISAGLV-------TGETDDDYIVLTDIQG 509
Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI-KLQKDVI 238
ED D+D T G I +Q + ++ + K ++ ++ I
Sbjct: 510 LEDFFGDMDFKVAGTHKG-ITAIQMDIKIHGLTRPIIEEAIACTKKARTYILDEVMSKAI 568
Query: 239 SN 240
+
Sbjct: 569 AE 570
Score = 92.6 bits (228), Expect = 4e-17, Method: Composition-based stats.
Identities = 35/234 (14%), Positives = 77/234 (32%), Gaps = 27/234 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----HGWITAEYGML 66
R + + V+ A G+ L+ +G+T +L+TAT EK I + G +
Sbjct: 38 RTLRVDVGRVAAQANGAALMHYGETVVLSTATASEKPREGIDFFPLSVEYEEKLYAVGKI 97
Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
P R G+ + R+I R +R + + + D
Sbjct: 98 PGGFNKR------EGKASENAILTSRVIDRPMRPLFPKDYRNDVTLNNLVLSVDPDCSPE 151
Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
A+ G+ +A G + G++ G + + + + + D
Sbjct: 152 LTAMLGSAIAT-------------AISDIPFDGPTSTTQVGLIDGEFVFNPNAAQRAVSD 198
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
+ T ++ ++ A + + A + ++IK +++
Sbjct: 199 LQLTVASTRD-KVIMIEAGANEVP--EAKMIEAIFAAHEVNQEVIKFIDTIVAE 249
>gi|14591333|ref|NP_143411.1| exosome complex exonuclease Rrp41 [Pyrococcus horikoshii OT3]
gi|29336584|sp|O59223|ECX1_PYRHO RecName: Full=Probable exosome complex exonuclease 1
gi|3257978|dbj|BAA30661.1| 249aa long hypothetical protein [Pyrococcus horikoshii OT3]
Length = 249
Score = 128 bits (321), Expect = 7e-28, Method: Composition-based stats.
Identities = 59/242 (24%), Positives = 101/242 (41%), Gaps = 23/242 (9%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVP-MWIRNTKHGWIT 60
R+ GR++ ++R I + V K A GS +++G ++ ++ ++ +
Sbjct: 17 RIDGRKKYELRPIKMKVGVLKNANGSAYIEWGRNKIIAAVYGPRELHSKHLQRPDRAILR 76
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
Y M P S R K RS EI ++I AL + L I + +V+Q
Sbjct: 77 VRYNMAPFSVEERKKPG-----PDRRSIEISKVIKGALEPALILEMFPRTSIDVFIEVLQ 131
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
AD GTR A IT A +AL D M D VAA + G + G ++DL+
Sbjct: 132 ADAGTRVAGITAASLALADAGIPMRDL-------------VAACAAGKIEGEIVLDLNKE 178
Query: 181 EDSTIDVDANF-VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
ED+ + D +M I +Q +++ F + LA + + Q++ +
Sbjct: 179 EDNYGEADVPVAIMPLKNDITLLQMDGY---LTKEEFIEAVRLAIKGAKAVYQKQREALK 235
Query: 240 NE 241
+
Sbjct: 236 EK 237
>gi|218201746|gb|EEC84173.1| hypothetical protein OsI_30553 [Oryza sativa Indica Group]
gi|222641142|gb|EEE69274.1| hypothetical protein OsJ_28540 [Oryza sativa Japonica Group]
Length = 242
Score = 128 bits (321), Expect = 7e-28, Method: Composition-based stats.
Identities = 64/243 (26%), Positives = 104/243 (42%), Gaps = 23/243 (9%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW-- 58
R+ GR+ N+MR++ V A+GS L + G+T ++ +V +
Sbjct: 10 FRVDGRRPNEMRQLKGEVGVVARADGSALFEMGNTRVIAAVYGPREVQNKGQQVNSKDAL 69
Query: 59 ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDV 118
+ EY M STG+R ++ R I +I + + + + + QI I V
Sbjct: 70 VRCEYRMADFSTGDRRRKPKGDRRSTE----ISLVIRQTMEASILTHLMPRSQIDIFVQV 125
Query: 119 IQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLD 178
+QADGGTR A I A +AL D M D V + S G LC P++DL+
Sbjct: 126 LQADGGTRAACINAATLALADAGIPMRDI-------------VTSCSAGYLCSTPLLDLN 172
Query: 179 YGEDSTIDVDANF-VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
Y EDS D +T + +Q A+ D F +++LA + + ++V
Sbjct: 173 YIEDSAGGPDVTVGFLTKMDKVTLLQMDAK---LPMDTFETVMDLAIEGCKAIANYIREV 229
Query: 238 ISN 240
+
Sbjct: 230 LLE 232
>gi|254444672|ref|ZP_05058148.1| 3' exoribonuclease family, domain 2 [Verrucomicrobiae bacterium
DG1235]
gi|198258980|gb|EDY83288.1| 3' exoribonuclease family, domain 2 [Verrucomicrobiae bacterium
DG1235]
Length = 745
Score = 128 bits (321), Expect = 7e-28, Method: Composition-based stats.
Identities = 49/250 (19%), Positives = 86/250 (34%), Gaps = 16/250 (6%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE-----EKVPMWIRNTK 55
+R GR+ N++RE+ V GS L G+T L TL + +
Sbjct: 313 VRSGGRKPNELRELKSQVGVVPRVHGSALFSRGETQGLVLTTLGPANQAQSLDAITGGPT 372
Query: 56 HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115
Y P S G + R+ G R+L VV + I I
Sbjct: 373 TKSFMLHYNFPPFSVGETGRFGTPGRREIGHGAL----AERSLLPVVPSEDVFPYSIRIS 428
Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIV 175
+++ ++G T A+I G ++L D + D + V + + +
Sbjct: 429 SEIMASNGSTSMASICGGCLSLMDAGVPITDPVAGISVGLVSEFDENGKP---AKHHILT 485
Query: 176 DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
D+ ED D+D T +G I Q + D A + +++ +++
Sbjct: 486 DILGEEDHFGDMDFKIAGTKNG-ITGFQLDLKINGLPFDIVKASVAQSREARLEILANMA 544
Query: 236 DVI---SNEV 242
+ EV
Sbjct: 545 TALEAPREEV 554
Score = 100 bits (248), Expect = 2e-19, Method: Composition-based stats.
Identities = 46/240 (19%), Positives = 82/240 (34%), Gaps = 29/240 (12%)
Query: 7 QENQMREISLTRR-VSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKHGWITA 61
+ + +I+ + V+ A G+ V G+T L +AT+ E + +
Sbjct: 8 TVDDL-DITFSTGDVANLASGAVTVSTGETSLFVSATVAKTVREGQDWFPLTVDYREKYT 66
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
G +P R GR + R+ R R + L QII
Sbjct: 67 AAGRIPGGYFKR------EGRPSEKEILTSRLCDRPCRPLFPKGFLNEVQIIGFVLSADQ 120
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
+ GA A G + A+ G + G+ + + E
Sbjct: 121 VNDADILMVNGASAA-------------LAISDIPWNGPIGAVRVGQIDGHFVANPTIEE 167
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
D+D +V T+ ++ ++GSA++ S++ F L A I +I K + E
Sbjct: 168 QYASDLDLIYVGTED-EMLMIEGSADQ--ISEERFLEALEYAHKAIQPIIAGIKQ-LREE 223
>gi|307202592|gb|EFN81927.1| Polyribonucleotide nucleotidyltransferase 1, mitochondrial
[Harpegnathos saltator]
Length = 618
Score = 128 bits (321), Expect = 7e-28, Method: Composition-based stats.
Identities = 49/246 (19%), Positives = 87/246 (35%), Gaps = 17/246 (6%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE--------EKVPMWIR 52
+R GR + +R+IS + GS + + G T ++ T TL+ + V M I
Sbjct: 203 VRCDGRSLSDIRDISCQVDLFNPLHGSAVFQRGQTQVMCTVTLDSLESAFKMDAVSMLIS 262
Query: 53 NTKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQI 112
K Y P +T V R+ G + LR ++ I
Sbjct: 263 GMKEKNFFLHYEFPPYATNEIGPVGRVGRREMGHGAL----AEKGLRPIIPKDYPF--TI 316
Query: 113 IIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY 172
+ +V++++G + A I G +AL D + + + + K A +
Sbjct: 317 RLTSEVLESNGSSSMATICGGSLALLDAGIPISSSAAGVAIGLLTKYDEA--KTDIEDYK 374
Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
+ D+ ED D+D T G +Q + + A ++IK
Sbjct: 375 ILTDILGIEDYFGDMDFKIAGTKRG-FTALQADIKIPGVPLKIIMECVQHASTAKTEIIK 433
Query: 233 LQKDVI 238
+ VI
Sbjct: 434 IMNKVI 439
Score = 49.8 bits (117), Expect = 3e-04, Method: Composition-based stats.
Identities = 15/92 (16%), Positives = 30/92 (32%), Gaps = 6/92 (6%)
Query: 150 KFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERA 209
G V A+ GM+ +++ + ++ T I+ ++GSA
Sbjct: 22 LSISDIPWNGPVGAVRIGMINNDILINPTRRQMQDGILNIIITATKQNLIIMLEGSANEV 81
Query: 210 TFSQDHFFAMLNLAKDRIADLI----KLQKDV 237
+ + L ++ KLQK
Sbjct: 82 L--EQDLKKAIKLGVKECQHIVASIMKLQKAC 111
>gi|253580814|ref|ZP_04858077.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
gi|251847884|gb|EES75851.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
Length = 697
Score = 128 bits (320), Expect = 8e-28, Method: Composition-based stats.
Identities = 38/241 (15%), Positives = 73/241 (30%), Gaps = 12/241 (4%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT--LEEKVPMWIRNTKHGWI 59
R GR Q+R ++ + GS + G T + T T +
Sbjct: 312 RPDGRAITQIRPLAAETDIIPRVHGSAMFTRGQTQ-ICTITTLAPLAEAQKLDGLDEFET 370
Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119
+ Y V S G R + RAL V+ I +
Sbjct: 371 SKRYMHHYNFPSYSVGETKPSRGPGRREIGHGALAERALVPVLPSEEEFPYAIRTVSETF 430
Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179
+++G T A+I + ++L ++ V + D+
Sbjct: 431 ESNGSTSQASICASTMSLMAAGVPIKKPVAGISCGLV-------TGDTDDDYIVLTDIQG 483
Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI-KLQKDVI 238
ED D+D T G I +Q + ++ + K+ ++ ++ + I
Sbjct: 484 LEDFFGDMDFKVAGTHDG-ITAIQMDIKIHGLTRPIVEEAIRRTKEAREYILTEVMEKCI 542
Query: 239 S 239
+
Sbjct: 543 A 543
Score = 102 bits (253), Expect = 6e-20, Method: Composition-based stats.
Identities = 37/234 (15%), Positives = 80/234 (34%), Gaps = 27/234 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----HGWITAEYGML 66
R +++ V+K A G+ L+ +GDT +L+TAT ++ I + G +
Sbjct: 12 RTLTVDINRVAKQANGAALMHYGDTTVLSTATASKEPREGIDFFPLSVEYEEKMYAVGKI 71
Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
P R G+ + R+I R +R + ++ + +
Sbjct: 72 PGGFNKR------EGKASEHAILTSRVIDRPMRPLFPKDYRNDVTLVNMVMSVDPECNPE 125
Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
A+ G+ +A G A G++ G I++ + D
Sbjct: 126 IPAMLGSSIATC-------------ISDIPFDGPCATTQVGLINGEYIINPTMAQKDVSD 172
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
+ T ++ ++ A+ +D + A + ++IK ++
Sbjct: 173 LQLTVASTRE-KVIMIEAGAKEVP--EDKMIEAIYKAHEVNQEIIKFIDKIVEE 223
>gi|197301798|ref|ZP_03166868.1| hypothetical protein RUMLAC_00524 [Ruminococcus lactaris ATCC
29176]
gi|197299238|gb|EDY33768.1| hypothetical protein RUMLAC_00524 [Ruminococcus lactaris ATCC
29176]
Length = 695
Score = 128 bits (320), Expect = 8e-28, Method: Composition-based stats.
Identities = 39/242 (16%), Positives = 73/242 (30%), Gaps = 12/242 (4%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT--LEEKVPMWIRNTKHGWI 59
R GR +Q+R ++ + GS + G T + T T +
Sbjct: 312 RPDGRAIDQIRPLAAEVDLISRVHGSAMFTRGQTQ-ICTVTTLAPLSEAQRLDGLDETET 370
Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119
T Y V S G R + RAL V+ A I +
Sbjct: 371 TKRYMHHYNFPSYSVGETRPSRGPGRREIGHGALAERALLPVLPSEAEFPYAIRTVSETF 430
Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179
+++G T A++ + ++L ++ V + D+
Sbjct: 431 ESNGSTSQASVCASSMSLMSAGVPIKSAVAGISAGLV-------TGETDDDYLVLTDIQG 483
Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI-KLQKDVI 238
ED D+D T G I +Q + ++ + K ++ ++ I
Sbjct: 484 LEDFFGDMDFKVAGTHKG-ITAIQMDIKIHGLTRPIIEEAIAATKKARTYIMDEVMSKAI 542
Query: 239 SN 240
+
Sbjct: 543 AE 544
Score = 89.9 bits (221), Expect = 3e-16, Method: Composition-based stats.
Identities = 37/234 (15%), Positives = 76/234 (32%), Gaps = 27/234 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----HGWITAEYGML 66
R + + V+K A G+ L+ +GDT +L TAT +K I + G +
Sbjct: 12 RTLRVDVDRVAKQANGAVLMHYGDTTVLCTATASDKPRDGIDFFPLSVEYNERMYSVGKI 71
Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
P R G+ + R+I R +R + + + D
Sbjct: 72 PGGFNKR------EGKASENAILTDRVIDRPMRPLFPKDYRNDVTLENLVMAVDQDCSPE 125
Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
A+ GA +A G ++ G++ G + + + D
Sbjct: 126 LTAMLGAALAT-------------SISDIPFDGPISTTQVGLVDGEFVFNPTAAQKVVSD 172
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
+ T ++ ++ A+ +D + A + +I +++
Sbjct: 173 LALTVASTKE-KVIMIEAGAKEVP--EDKMIEAIFAAHELNQKVITFFDTIVAE 223
>gi|52550472|gb|AAU84321.1| ribonuclease PH [uncultured archaeon GZfos9D1]
Length = 245
Score = 128 bits (320), Expect = 8e-28, Method: Composition-based stats.
Identities = 61/239 (25%), Positives = 105/239 (43%), Gaps = 23/239 (9%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKV-PMWIRNTKHGWIT 60
RL GR +++R I + V K A+GSC ++ G+ ++ ++ P ++ K +
Sbjct: 13 RLDGRGFDELRPIKIEVGVLKRADGSCYLELGNNKVIAAVYGPREMHPRHAQDAKMAVVK 72
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
Y M P ST +R + RS EI ++ A V+ I + +++Q
Sbjct: 73 FRYNMAPFSTDDRKRPG-----PDRRSVEISKVCREAFDPVIMRELYPKMGIDVYVELLQ 127
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
+D GTRTA I A +AL D M+D V++I+ G + G ++DL+
Sbjct: 128 SDAGTRTAGINAASIALADAGIPMKDL-------------VSSIAVGKIGGEMVLDLNAA 174
Query: 181 EDSTIDVDANFVM-TDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
ED+ + D M + I +Q +Q+ F L LA + +LQ+ +
Sbjct: 175 EDNNGEADMPIAMIARTNTITALQMDGR---MTQEEFGRGLKLAMGACHQIYELQRAAL 230
>gi|315651726|ref|ZP_07904731.1| polyribonucleotide nucleotidyltransferase [Eubacterium saburreum
DSM 3986]
gi|315485981|gb|EFU76358.1| polyribonucleotide nucleotidyltransferase [Eubacterium saburreum
DSM 3986]
Length = 717
Score = 128 bits (320), Expect = 1e-27, Method: Composition-based stats.
Identities = 42/245 (17%), Positives = 77/245 (31%), Gaps = 18/245 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL-----EEKVPMWIRNTKH 56
R GR Q+R ++ + GS + G T + TL +K+ ++
Sbjct: 332 RPDGRAMTQIRPLAAEVDIIPRVHGSAMFTRGQTQICNVVTLAPLAEAQKIDGLNQSETT 391
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
+Y S G R+ G RAL V+ I
Sbjct: 392 KRYIHQYNFPSYSVGETRPSRGPGRREIGHGAL----AERALIPVLPAPEEFPYAIRSVS 447
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+ +++G T A+ + +AL ++ V + D
Sbjct: 448 ETFESNGSTSMASTCSSCMALMAAGVPIKKMVAGISCGLV-------TGESDDDYVLLTD 500
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL-QK 235
+ ED D+D TDSG I +Q + ++D + + +++ K
Sbjct: 501 IQGLEDFFGDMDFKVTGTDSG-ITAIQMDIKIHGLTKDIVKGAIARCHEARDFIMETCMK 559
Query: 236 DVISN 240
I+
Sbjct: 560 PCIAE 564
Score = 89.9 bits (221), Expect = 3e-16, Method: Composition-based stats.
Identities = 36/234 (15%), Positives = 76/234 (32%), Gaps = 27/234 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----HGWITAEYGML 66
R + + V+ A G+ + +GDT +L+TAT +K I + G +
Sbjct: 32 RILRVDIGRVAAQANGAAFMHYGDTTVLSTATASDKPRDGIDFFPLSVEYEEKMYAVGKM 91
Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
P R G+ + R+I R +R + + + D
Sbjct: 92 PGGYNKR------EGKASENAILTSRVIDRPMRPLFPKDYRNDVTLNNLVLSVDPDCSPE 145
Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
A+ G+ +A G A GM+ G+ +V+ + + + D
Sbjct: 146 LTAMLGSAIAT-------------AISDIPFDGPCATTQIGMVGGFFVVNPNEEQMAVSD 192
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
+ T ++ ++ A + + A ++I +++
Sbjct: 193 LKLTVASTKD-KVIMIEAGANE--IPDEKMIEAIYKADSVNKEIIAFIDKIVAE 243
>gi|239626266|ref|ZP_04669297.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
gi|239520496|gb|EEQ60362.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
Length = 706
Score = 128 bits (320), Expect = 1e-27, Method: Composition-based stats.
Identities = 41/245 (16%), Positives = 81/245 (33%), Gaps = 18/245 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL-----EEKVPMWIRNTKH 56
R GR +++R ++ + GS + G T +L TL +++ N
Sbjct: 312 RPDGRAIDEIRHLAAEIDLLPRVHGSGMFTRGQTQILNACTLAPLSEAQRIDGLDENETS 371
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y S G R+ G RAL V+ + I
Sbjct: 372 KRYMHHYNFPSFSVGETKPSRGPGRREIGHGAL----AERALIPVLPSAEEFPYAIRTVS 427
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+ ++++G T A+I + ++L +++ V + D
Sbjct: 428 ETMESNGSTSQASICASTLSLMAAGVPIKEMVAGISCGLV-------TGDTDDDYLVLTD 480
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI-KLQK 235
+ ED D+D T +G I +Q + ++ + ++ ++ + K
Sbjct: 481 IQGLEDFFGDMDFKVGGTKNG-ITAIQMDIKIHGLTRPIIEEAITRTREARMHILDDVMK 539
Query: 236 DVISN 240
VIS
Sbjct: 540 PVISE 544
Score = 94.1 bits (232), Expect = 2e-17, Method: Composition-based stats.
Identities = 33/234 (14%), Positives = 78/234 (33%), Gaps = 27/234 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKHGWITAEYGML 66
R++++ V+ A G+ + +GDT +L TAT E + + + ++ G +
Sbjct: 12 RKLTVEIGRVAAQANGAAFMHYGDTVVLATATASSKPREGIDFFPLSVEYEEKLYSVGKI 71
Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
P R G+ + R+I R +R + + + D
Sbjct: 72 PGGFNKR------EGKASENAVLTCRVIDRPMRPLFPKDYRNDVTLDNIVMSVDPDCSPE 125
Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
A+ G+ +A G A G++ G +++ + D
Sbjct: 126 LTAMLGSAIAT-------------SISDIPFAGPCATTQVGLVDGEFVINPTAAQKQVSD 172
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
+ T ++ ++ A + + A + ++I+ +++
Sbjct: 173 MALTVASTRE-KVIMIEAGANEVP--EQKMIDAIFKAHEVNQEIIRFIDTIVAE 223
>gi|266619741|ref|ZP_06112676.1| polyribonucleotide nucleotidyltransferase [Clostridium hathewayi
DSM 13479]
gi|288868702|gb|EFD01001.1| polyribonucleotide nucleotidyltransferase [Clostridium hathewayi
DSM 13479]
Length = 551
Score = 127 bits (319), Expect = 1e-27, Method: Composition-based stats.
Identities = 38/241 (15%), Positives = 75/241 (31%), Gaps = 10/241 (4%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL-EEKVPMWIRNTKHGWIT 60
R GR +Q+R ++ + GS + G T +L TL + +
Sbjct: 312 RPDGRAIDQIRPLAAEIDMLPRVHGSAMFTRGQTQILNICTLAPLSESQRLDGIDDMETS 371
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
Y V S G R + RAL V+ I + ++
Sbjct: 372 KRYMHHYNFPSFSVGETKPSRGPGRREIGHGALAERALIPVLPSEEEFPYAIRTVSETME 431
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
++G T A+I + ++L ++ V + D+
Sbjct: 432 SNGSTSQASICSSSMSLMAAGVPIKSAVAGISCGLV-------TGDTDDDYIVLTDIQGL 484
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI-KLQKDVIS 239
ED D+D T G I +Q + ++ + ++ ++ ++ I+
Sbjct: 485 EDFFGDMDFKVGGTHKG-ITAIQMDIKIHGLTRPIIEEAIRRTREARIYILDEVMAKAIA 543
Query: 240 N 240
Sbjct: 544 E 544
Score = 99.1 bits (245), Expect = 4e-19, Method: Composition-based stats.
Identities = 40/234 (17%), Positives = 78/234 (33%), Gaps = 27/234 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----HGWITAEYGML 66
R +++ V+K A G+ L+ +GDT +L+TAT +K I + G +
Sbjct: 12 RTLTVEVGRVAKQASGAALMHYGDTVVLSTATASDKPREGIDFFPLSVEYEEKLYAVGKI 71
Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
P R G+ + R+I R +R + + + D
Sbjct: 72 PGGFNKR------EGKASENAILTSRVIDRPMRPLFPKDYRNDVTLDNIVMSVDQDCSPE 125
Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
A+ G+ +A G A GM+ G +V+ + D
Sbjct: 126 LTAMLGSAIATC-------------ISDIPFDGPCATTQIGMVDGELVVNPTQAQKQASD 172
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
+ T ++ ++ A +D + A ++IK +++
Sbjct: 173 MALTVASTRE-KVIMIEAGANEVP--EDIMIEAIFKAHSVNQEVIKFIDTIVAE 223
>gi|194741988|ref|XP_001953491.1| GF17196 [Drosophila ananassae]
gi|190626528|gb|EDV42052.1| GF17196 [Drosophila ananassae]
Length = 771
Score = 127 bits (319), Expect = 1e-27, Method: Composition-based stats.
Identities = 45/248 (18%), Positives = 83/248 (33%), Gaps = 17/248 (6%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIR--------- 52
R GR +Q+R IS + K GS L + G T + T +L+
Sbjct: 355 RCDGRSYDQLRNISCQVDLYKPLHGSALFQRGQTQVFCTVSLDSPESAMKLDSLAALESG 414
Query: 53 NTKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQI 112
K Y P +TG + + R+ G R L + +
Sbjct: 415 GLKAKNFMLHYEFPPYATGEVGRIGPLGRRELGHGAL----AERGLLPTLPHDYPF--TV 468
Query: 113 IIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY 172
+ +V++++G + A++ G +AL D + + + V K + +
Sbjct: 469 RLTSEVLESNGSSSMASVCGGSLALMDAGVPVTAPAAGVAIGLVTKYE-NDDTKHLQDYR 527
Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
+ D+ ED D+D T G +Q + L A D + ++
Sbjct: 528 ILTDILGIEDYMGDMDMKVAGTRKG-FTAIQADLKIPGIPLKVVMESLQKATDAKSKILD 586
Query: 233 LQKDVISN 240
+ + I
Sbjct: 587 IMGEAIRE 594
Score = 86.4 bits (212), Expect = 3e-15, Method: Composition-based stats.
Identities = 31/225 (13%), Positives = 68/225 (30%), Gaps = 18/225 (8%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRST 70
R ++ + ++++A GS + + GDT ++ TA + K
Sbjct: 50 RNMTFSSGRLARFANGSSVCQMGDTAVMVTAVAKAKPTPGQGFMPLVVDYRLKNAASGRI 109
Query: 71 GNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAI 130
+ + R+I R+LR + Q++ + + A AI
Sbjct: 110 P--MNFMRREMGPSEKEILSARLIDRSLRPLFSKDYRTETQLVCNMLAMDAVHSPDVLAI 167
Query: 131 TGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDAN 190
A +A G + A+ G+ G +++ E + +D
Sbjct: 168 NAASMA-------------LSLSDIPWNGPIGAVRVGLCDGEVLINPTRRELQSSQLDLV 214
Query: 191 FVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
T +V ++ + Q + +I +
Sbjct: 215 VSATKQNLVVMLE--GKGNVVLQQDLLKAIKQGTREAQFIIHEIE 257
>gi|125773375|ref|XP_001357946.1| GA10930 [Drosophila pseudoobscura pseudoobscura]
gi|195165852|ref|XP_002023752.1| GL27239 [Drosophila persimilis]
gi|54637680|gb|EAL27082.1| GA10930 [Drosophila pseudoobscura pseudoobscura]
gi|194105912|gb|EDW27955.1| GL27239 [Drosophila persimilis]
Length = 769
Score = 127 bits (319), Expect = 1e-27, Method: Composition-based stats.
Identities = 44/248 (17%), Positives = 83/248 (33%), Gaps = 17/248 (6%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIR--------- 52
R GR + +R IS + K GS L + G T + T +L+
Sbjct: 353 RCDGRDYDTLRNISCQVDMYKPLHGSALFQRGQTQVFCTVSLDSPESAMKLDSLAALDSG 412
Query: 53 NTKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQI 112
K Y P +TG + + R+ G R+L + +
Sbjct: 413 GLKAKNFMLHYEFPPYATGEVGRIGPLGRRELGHGAL----AERSLLPTLPHDYPF--TV 466
Query: 113 IIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY 172
+ +V++++G + A++ G +AL D + + + V K + +
Sbjct: 467 RLTSEVLESNGSSSMASVCGGSLALMDAGVPVSAPAAGVAIGLVTKYE-NDDTKHLQDYR 525
Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
+ D+ ED D+D T G +Q + L A D + ++
Sbjct: 526 ILTDILGIEDYMGDMDMKVAGTRKG-FTAIQADLKVPGIPLKVVMESLQKATDAKSKILD 584
Query: 233 LQKDVISN 240
+ + I
Sbjct: 585 IMAEAIRE 592
Score = 86.4 bits (212), Expect = 3e-15, Method: Composition-based stats.
Identities = 30/225 (13%), Positives = 70/225 (31%), Gaps = 18/225 (8%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRST 70
R +S++ ++++A G+ + + GDT ++ TA + K
Sbjct: 48 RNMSISSGKLARFANGTAVCQMGDTAVMVTAVAKPKPTPGQNFMPLVVDYRLKNAASGRI 107
Query: 71 GNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAI 130
+ + R+I R+LR + + Q++ + + A AI
Sbjct: 108 P--MNFMRRELGPSEKEILSARLIDRSLRPLFNKDYRTETQLVCNMLAMDAVHSPDILAI 165
Query: 131 TGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDAN 190
A +A G + A+ G+ G +++ E + +D
Sbjct: 166 NAASMA-------------LSLSDIPWNGPIGAVRVGLSDGEVLINPTRRELQSSQLDLV 212
Query: 191 FVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
T +V ++ + + +I+ +
Sbjct: 213 VSATKQNLVVMLE--GKGNVVLMQDLLKAIKQGTREAQFIIQEIE 255
>gi|225028434|ref|ZP_03717626.1| hypothetical protein EUBHAL_02708 [Eubacterium hallii DSM 3353]
gi|224954232|gb|EEG35441.1| hypothetical protein EUBHAL_02708 [Eubacterium hallii DSM 3353]
Length = 696
Score = 127 bits (319), Expect = 1e-27, Method: Composition-based stats.
Identities = 44/244 (18%), Positives = 80/244 (32%), Gaps = 18/244 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL-----EEKVPMWIRNTKH 56
R GR N++R ++ + GS + G T ++T TL +K+ N
Sbjct: 313 RPDGRAINEIRPLAAEIDLLPRVHGSGMFTRGQTQIMTITTLAPLSEAQKIDGLDANVTS 372
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y S G R+ G RAL V+ I
Sbjct: 373 KRYMHHYNFPSYSVGETKPSRGPGRREIGHGAL----AERALVPVLPSEDEFPYAIRTVS 428
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+ ++++G T A+I + ++L ++ V + D
Sbjct: 429 ETLESNGSTSQASICASTLSLMAAGVPIKKPVAGISTGLV-------TGDSDDDYIVLTD 481
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI-KLQK 235
+ ED D+D T G I +Q + + D ++ K+ ++ + +
Sbjct: 482 IQGLEDFFGDMDFKVAGTHDG-ITAIQMDIKIHGLTPDIIREAISRTKEAREHILTDVME 540
Query: 236 DVIS 239
VIS
Sbjct: 541 PVIS 544
Score = 99.1 bits (245), Expect = 4e-19, Method: Composition-based stats.
Identities = 42/234 (17%), Positives = 78/234 (33%), Gaps = 27/234 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----HGWITAEYGML 66
R +++ V+ A G+ L+++GDT +L+TAT EK I G +
Sbjct: 12 RTLTVEIGKVAAQANGAALMRYGDTVVLSTATASEKPREGIDFFPLSVEFEEKMYAVGKI 71
Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
P R G+ + R+I R +R + + + D
Sbjct: 72 PGGFNKR------EGKASEHAVLTSRVIDRPMRPLFPKDYRNDVTLNNLVMAVDPDCSPE 125
Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
A+ GA VA G +A G++ G IV+ + D
Sbjct: 126 VTAMLGASVAT-------------SISDIPFDGPIAGTRIGLIDGEFIVNPTADQQLVSD 172
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
+ T ++ ++ A +D + A + ++IK ++
Sbjct: 173 LALTVASTAE-KVIMIEAGANEVP--EDKMIEAIFKAHEVNKEVIKFIDRIVEE 223
>gi|307128697|ref|YP_003880727.1| polynucleotide phosphorylase/polyadenylase [Candidatus Sulcia
muelleri CARI]
gi|306483159|gb|ADM90029.1| polynucleotide phosphorylase/polyadenylase [Candidatus Sulcia
muelleri CARI]
Length = 710
Score = 127 bits (319), Expect = 1e-27, Method: Composition-based stats.
Identities = 49/244 (20%), Positives = 89/244 (36%), Gaps = 18/244 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRN----TKH 56
+RL GR + +R IS GS + G+T L+T TL + + +
Sbjct: 319 IRLDGRSLDDIRNISSKVDCLPGVHGSAIFSRGETQALSTVTLGSSLDVNKIDNVIIQDK 378
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P STG + VS R+ G RAL++++ I +
Sbjct: 379 QKFYLHYNFPPFSTGEIKLLKGVSRREIGHGNL----AQRALKNIIP--FDNPYTIRVVS 432
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
DV++++G + A + + +AL D ++ + + + + D
Sbjct: 433 DVLESNGSSSMATVCASTLALMDAGIPIKRPVSGISMGLIFNKFTGEA-------LILSD 485
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED+ D+D T G + Q + S D + AK I +I
Sbjct: 486 ILGDEDNIGDMDFKITGTKYG-MTACQMDLKIYGISYDILLKTILKAKKGIIFIINNMLT 544
Query: 237 VISN 240
+++
Sbjct: 545 TLNS 548
Score = 89.1 bits (219), Expect = 5e-16, Method: Composition-based stats.
Identities = 42/232 (18%), Positives = 75/232 (32%), Gaps = 27/232 (11%)
Query: 8 ENQMREISLTRRVSK-YAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKHGWITAE 62
R +S+ A GS +V+ +T L+ T + + V N + +
Sbjct: 12 LEDGRTLSIETGYLACQANGSAVVRMANTSLIATVVVSTEEKKGVNFLPLNIDYREKYSA 71
Query: 63 YGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQAD 122
G +P R GR R++ R LR + QI+I +
Sbjct: 72 GGKIPGGFIKR------EGRPSDEEILTMRLVDRLLRPLFPKIFYKEIQIMISLLSYDIN 125
Query: 123 GGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGED 182
A A A++ KG V+A+ + I++ +
Sbjct: 126 VLPDGLAGLVASTAVY-------------LSGIPFKGPVSAVRIIRMKNLFIINPGIEDV 172
Query: 183 STIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
D+D + + I+ V+ E S+ ++ +A I IK Q
Sbjct: 173 KKSDIDLIVGGSIN-SILMVE--GEMKEVSEKEIMKIIKIAHFYIKRQIKAQ 221
>gi|328955438|ref|YP_004372771.1| polyribonucleotide nucleotidyltransferase [Coriobacterium glomerans
PW2]
gi|328455762|gb|AEB06956.1| polyribonucleotide nucleotidyltransferase [Coriobacterium glomerans
PW2]
Length = 761
Score = 127 bits (319), Expect = 1e-27, Method: Composition-based stats.
Identities = 47/243 (19%), Positives = 89/243 (36%), Gaps = 18/243 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR+ +++R I + GS L + G T +L+ L E + I +
Sbjct: 319 RVDGRRADEIRPIMVKDAYLPLVHGSGLFQRGQTQVLSVLALGMLNESQRLDTIEPVEGK 378
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
+Y P STG + A R+ G RAL V+ + I + +
Sbjct: 379 RYMHQYNFPPFSTGETGRMGAPKRREIGHGHL----AERALLPVLPDESEFPYAIRVVSE 434
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
V++++G + A+ + +AL D ++ + + + + + +
Sbjct: 435 VLESNGSSSMASTCASCLALMDGGVPIKRPVSGIAMGLIQENGKTVVLSD---------I 485
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T+ G I +Q + + D L A+ A + DV
Sbjct: 486 QGIEDFLGDMDFKVTGTERG-ITALQMDNKATGLTFDILRQALEQARAGRAFIRGKMVDV 544
Query: 238 ISN 240
+
Sbjct: 545 LPE 547
Score = 81.8 bits (200), Expect = 7e-14, Method: Composition-based stats.
Identities = 46/224 (20%), Positives = 70/224 (31%), Gaps = 24/224 (10%)
Query: 15 SLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKV---PMWIRNTKHGWITAEYGMLPRST 70
+L ++K A G+ LVK GDT LTT + ++ + G +P
Sbjct: 16 TLESGELAKQATGAALVKQGDTTALTTVVVSKERKNYDFFPLTVDFNEKLYAVGRIPGGF 75
Query: 71 GNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAI 130
R GR + RMI R +R QI++ V +
Sbjct: 76 LKR------EGRASDKGTLTARMIDRPIRPSFPDGFRNEVQIVVTTLVADQTNPIDVIST 129
Query: 131 TGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDAN 190
GA ++L E + I G IV+ Y E D+D
Sbjct: 130 MGASLSLTLGGVPFEGPLACVR-----------IGRSGDSGEFIVNPTYEEIEASDLDLV 178
Query: 191 FVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
T I V+ A+ S+ A + + I Q
Sbjct: 179 LAGTRDF-ISMVEAGADE--ISEQDMLAAMEFGQRAIGAFCDEQ 219
>gi|226357252|ref|YP_002786992.1| tRNA nucleotidyltransferase [Deinococcus deserti VCD115]
gi|226319242|gb|ACO47238.1| putative tRNA nucleotidyltransferase (Phosphate-dependent
exonuclease) (Ribonuclease PH) (RNase PH) [Deinococcus
deserti VCD115]
Length = 249
Score = 127 bits (319), Expect = 1e-27, Method: Composition-based stats.
Identities = 92/238 (38%), Positives = 127/238 (53%), Gaps = 8/238 (3%)
Query: 5 GRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYG 64
GR + R +S+ R V+ +A GS + G T +L T TLE+K +R K GW+TAEY
Sbjct: 14 GRGLLEPRPVSVKRGVNPHAPGSAHLIMGRTEILATVTLEDKPAPHMRGKKEGWLTAEYS 73
Query: 65 MLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGG 124
MLPR+T +R R Q GR EIQR++GRALR+ VDL ++ I +DCDV+ ADGG
Sbjct: 74 MLPRATNDRQAR--ERNLQNGRRHEIQRLLGRALRASVDLKYFRNQTIYVDCDVLVADGG 131
Query: 125 TRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDST 184
TR A+I ALHD + + L V AIS G++ VDLDY ED
Sbjct: 132 TRVASILAGHAALHDFCDRLINS--GQLSEWPLTHKVGAISVGLVGEEVRVDLDYAEDKV 189
Query: 185 IDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNEV 242
D N V TD+G ++EVQG AE S + +L + + + + + E+
Sbjct: 190 ARADLNVVATDTGLVIEVQGGAEEGPISLAEYSQLL---HTGVQAIHGVMDE-LGREL 243
>gi|225388763|ref|ZP_03758487.1| hypothetical protein CLOSTASPAR_02499 [Clostridium asparagiforme
DSM 15981]
gi|225045170|gb|EEG55416.1| hypothetical protein CLOSTASPAR_02499 [Clostridium asparagiforme
DSM 15981]
Length = 702
Score = 127 bits (319), Expect = 1e-27, Method: Composition-based stats.
Identities = 41/245 (16%), Positives = 79/245 (32%), Gaps = 18/245 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL-----EEKVPMWIRNTKH 56
R GR ++R ++ + GS + G T +L TL +++ N
Sbjct: 312 RPDGRAVTEIRRLAAEVDLLPRVHGSGMFTRGQTQILNACTLAPLSEAQRLDGLDENETS 371
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y S G R+ G RAL V+ I
Sbjct: 372 KRYMHHYNFPSFSVGETKPSRGPGRREIGHGAL----AERALVPVLPSEEEFPYAIRTVS 427
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+ ++++G T A+I + ++L ++D V + D
Sbjct: 428 ETMESNGSTSQASICASTLSLMAAGVPIKDMVAGISCGLV-------TGETDDDYLVLTD 480
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI-KLQK 235
+ ED D+D T G I +Q + ++ ++ ++ ++ + +
Sbjct: 481 IQGLEDFFGDMDFKVAGTKKG-ITAIQMDIKIHGLTRPIIEEAISRTREARIHILDDVMR 539
Query: 236 DVISN 240
VIS
Sbjct: 540 PVISE 544
Score = 92.6 bits (228), Expect = 4e-17, Method: Composition-based stats.
Identities = 35/234 (14%), Positives = 77/234 (32%), Gaps = 27/234 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKHGWITAEYGML 66
R++++ V+ A G+ + +GDT +L+TAT E + + + + G +
Sbjct: 12 RKLTVEVGRVAAQANGAVFMHYGDTVVLSTATASTKPREGIDFFPLSVEFEEKLYAVGKI 71
Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
P R G+ + R+I R +R + + + +
Sbjct: 72 PGGFNKR------EGKASENAVLTARVIDRPMRPLFPKDYRNDVTLDNIVMSVDPNCSPE 125
Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
A+ G+ +A G A GM+ G I++ + D
Sbjct: 126 LTAMLGSAIAT-------------SISDIPFAGPCATTQVGMIDGEFIINPTADQKHVSD 172
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
+ T ++ ++ A +D + A ++I +++
Sbjct: 173 LALTVASTRE-KVIMIEAGANEVP--EDKMIEAIFKADQVNKEIIAFIDTIVAE 223
>gi|327537258|gb|EGF23997.1| polynucleotide phosphorylase/polyadenylase [Rhodopirellula baltica
WH47]
Length = 819
Score = 127 bits (319), Expect = 1e-27, Method: Composition-based stats.
Identities = 46/241 (19%), Positives = 85/241 (35%), Gaps = 17/241 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R GR N +R I + GS L + G+T L T L +E+ +++
Sbjct: 381 RPDGRDHNSLRAIHCETDLLPRVHGSALFQRGETQALITIALGTSRDEQRVDGLQDEYSK 440
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
+Y S G R+ G R++ V+ + I + D
Sbjct: 441 KFMLDYNFPSYSVGECRPIRGPGRREIGHGCL----AERSVAPVLPSADDFPYTIRVISD 496
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ GA + L + + + V G I D+
Sbjct: 497 ITESNGSSSMASVCGATLGLMASGVPISNPVAGISVGLVQDGPDN--------WCLITDI 548
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T +G I +Q + + D A L +++ +++K
Sbjct: 549 LGTEDHFGDMDFKIAGTQNG-ITGIQLDLKVTGVTNDIIRATLKQSREARIEILKKMLTT 607
Query: 238 I 238
I
Sbjct: 608 I 608
Score = 109 bits (272), Expect = 3e-22, Method: Composition-based stats.
Identities = 41/227 (18%), Positives = 76/227 (33%), Gaps = 26/227 (11%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTA---TLEEKVPMWIRNTKHGWITAEYGMLPRS 69
+S ++K A GS LV++G+T +L A T + + + A G P
Sbjct: 82 LSFETGHIAKQAAGSVLVQYGETVVLVAAASGTPRPGIDFFPLMCDYRERLAAAGKFPGG 141
Query: 70 TGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAA 129
R GR + R++ R +R + Q+ A
Sbjct: 142 FLKR------EGRPSTKEILSSRLMDRPIRPLWPAGYKDEVQVQACVIASDLQNDGDVLA 195
Query: 130 ITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDA 189
+ G ALH KG + ++ G + G + + ++D
Sbjct: 196 MIGGATALH-------------ISPLPFKGPLGSVRVGKVDGKLVAFPTADQLEQSELDM 242
Query: 190 NFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ + ++G A +D + A D I ++I LQ++
Sbjct: 243 IVSGSRD-MVAMIEGFANE--MPEDEMMEAIGFAHDAIREVIDLQEE 286
>gi|312968015|ref|ZP_07782226.1| ribonuclease PH [Escherichia coli 2362-75]
gi|312287274|gb|EFR15183.1| ribonuclease PH [Escherichia coli 2362-75]
Length = 211
Score = 127 bits (319), Expect = 1e-27, Method: Composition-based stats.
Identities = 109/212 (51%), Positives = 144/212 (67%), Gaps = 2/212 (0%)
Query: 29 LVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQ 88
LV+FGDT +L TA++EE VP +++ GWITAEYGMLPRST R REA G+QGGR+
Sbjct: 2 LVEFGDTKVLCTASIEEGVPRFLKGQGQGWITAEYGMLPRSTHTRNAREAAKGKQGGRTM 61
Query: 89 EIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCS 148
EIQR+I RALR+ VDL ALG I +DCDV+QADGGTRTA+ITGA VAL D L + +
Sbjct: 62 EIQRLIARALRAAVDLKALGEFTITLDCDVLQADGGTRTASITGACVALADALNKLVEN- 120
Query: 149 NKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAER 208
+ +KG VAA+S G++ G + DL+Y EDS + D N VMT+ G I+EVQG+AE
Sbjct: 121 -GKLKTNPMKGMVAAVSVGIVNGEAVCDLEYVEDSAAETDMNVVMTEDGRIIEVQGTAEG 179
Query: 209 ATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
F+ + +L LA+ I ++ QK ++N
Sbjct: 180 EPFTHEELLTLLALARGGIESIVATQKAALAN 211
>gi|32473910|ref|NP_866904.1| polynucleotide phosphorylase/polyadenylase [Rhodopirellula baltica
SH 1]
gi|32444447|emb|CAD74445.1| polyribonucleotide nucleotidyltransferase [Rhodopirellula baltica
SH 1]
Length = 818
Score = 127 bits (319), Expect = 1e-27, Method: Composition-based stats.
Identities = 46/241 (19%), Positives = 85/241 (35%), Gaps = 17/241 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R GR N +R I + GS L + G+T L T L +E+ +++
Sbjct: 381 RPDGRDHNSLRAIHCETDLLPRVHGSALFQRGETQALITIALGTSRDEQRVDGLQDEYSK 440
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
+Y S G R+ G R++ V+ + I + D
Sbjct: 441 KFMLDYNFPSYSVGECRPIRGPGRREIGHGCL----AERSVAPVLPSADDFPYTIRVISD 496
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ GA + L + + + V G I D+
Sbjct: 497 ITESNGSSSMASVCGATLGLMASGVPISNPVAGISVGLVQDGPDN--------WCLITDI 548
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T +G I +Q + + D A L +++ +++K
Sbjct: 549 LGTEDHFGDMDFKIAGTQNG-ITGIQLDLKVTGVTNDIIRATLKQSREARIEILKKMLTT 607
Query: 238 I 238
I
Sbjct: 608 I 608
Score = 109 bits (272), Expect = 3e-22, Method: Composition-based stats.
Identities = 41/227 (18%), Positives = 76/227 (33%), Gaps = 26/227 (11%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTA---TLEEKVPMWIRNTKHGWITAEYGMLPRS 69
+S ++K A GS LV++G+T +L A T + + + A G P
Sbjct: 82 LSFETGHIAKQAAGSVLVQYGETVVLVAAASGTPRPGIDFFPLMCDYRERLAAAGKFPGG 141
Query: 70 TGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAA 129
R GR + R++ R +R + Q+ A
Sbjct: 142 FLKR------EGRPSTKEILSSRLMDRPIRPLWPAGYKDEVQVQACVIASDLQNDGDVLA 195
Query: 130 ITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDA 189
+ G ALH KG + ++ G + G + + ++D
Sbjct: 196 MIGGATALH-------------ISPLPFKGPLGSVRVGKVDGKLVAFPTADQLEQSELDM 242
Query: 190 NFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ + ++G A +D + A D I ++I LQ++
Sbjct: 243 IVSGSRD-MVAMIEGFANE--MPEDEMMEAIGFAHDAIREVIDLQEE 286
>gi|167758075|ref|ZP_02430202.1| hypothetical protein CLOSCI_00413 [Clostridium scindens ATCC 35704]
gi|167663972|gb|EDS08102.1| hypothetical protein CLOSCI_00413 [Clostridium scindens ATCC 35704]
Length = 695
Score = 127 bits (319), Expect = 1e-27, Method: Composition-based stats.
Identities = 39/242 (16%), Positives = 73/242 (30%), Gaps = 12/242 (4%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT--LEEKVPMWIRNTKHGWI 59
R GR +Q+R ++ + GS + G T + T T +
Sbjct: 312 RPDGRAIDQIRPLAAEIDLIPRVHGSAMFTRGQTQ-ICTITTLAPLAEAQRLDGLDEAET 370
Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119
+ Y V S G R + RAL V+ A I +
Sbjct: 371 SKRYMHHYNFPSYSVGETRPSRGPGRREIGHGALAERALIPVLPNEAEFPYAIRTVSETF 430
Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179
+++G T A+I + ++L ++ V + D+
Sbjct: 431 ESNGSTSQASICASSMSLMAAGVPIKAAVAGISAGLV-------TGDSDDDYLVLTDIQG 483
Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI-KLQKDVI 238
ED D+D T G I +Q + ++ + K ++ ++ I
Sbjct: 484 LEDFFGDMDFKVAGTHKG-ITAIQMDIKIHGLTRPIIEEAIAATKKARTYILDEVMSKTI 542
Query: 239 SN 240
+
Sbjct: 543 AE 544
Score = 90.7 bits (223), Expect = 2e-16, Method: Composition-based stats.
Identities = 36/234 (15%), Positives = 74/234 (31%), Gaps = 27/234 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----HGWITAEYGML 66
R + + V+K A G+ L+ +GDT +L TAT EK I + G +
Sbjct: 12 RTLRVDVDRVAKQANGAVLMHYGDTTVLCTATASEKPREGIDFFPLSVEYNERLYSVGKI 71
Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
P R G+ + R+I R +R + + + D
Sbjct: 72 PGGFNKR------EGKASENAILTCRVIDRPMRPLFPKDYRNDVTLENLVLSVDQDCSPE 125
Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
A+ GA +A G ++ G++ + + + D
Sbjct: 126 LTAMLGAAIAT-------------TISDIPFDGPISTTQVGIVDDEFVFNPTAAQKEASD 172
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
+ T ++ ++ A + + A + +I + +++
Sbjct: 173 LALTVASTKE-KVIMIEAGANEVP--EQKMIDAIFAAHELNQKVIAFIETIVAE 223
>gi|331091291|ref|ZP_08340132.1| polyribonucleotide nucleotidyltransferase [Lachnospiraceae
bacterium 2_1_46FAA]
gi|330404738|gb|EGG84277.1| polyribonucleotide nucleotidyltransferase [Lachnospiraceae
bacterium 2_1_46FAA]
Length = 696
Score = 127 bits (318), Expect = 1e-27, Method: Composition-based stats.
Identities = 39/242 (16%), Positives = 73/242 (30%), Gaps = 12/242 (4%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT--LEEKVPMWIRNTKHGWI 59
R GR +Q+R ++ + GS + G T + T T I
Sbjct: 312 RPDGRAIDQIRPLAAEIDLIPRVHGSAMFTRGQTQ-ICTVTTLAPLSEAQRIDGLDEAET 370
Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119
+ Y V S G R + RAL V+ I +
Sbjct: 371 SKRYMHHYNFPSYSVGETKPSRGPGRREIGHGALAERALVPVLPTEEEFPYAIRTVSETF 430
Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179
+++G T A+I + ++L ++ V + D+
Sbjct: 431 ESNGSTSQASICASSMSLMAAGVPIKSAVAGISAGLV-------TGDTDDDYLVLTDIQG 483
Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI-KLQKDVI 238
ED D+D T G I +Q + ++ + K ++ ++ + I
Sbjct: 484 LEDFFGDMDFKVAGTHKG-ITAIQMDIKIHGLTRPIIEEAIARTKQARTYILDEVMHNAI 542
Query: 239 SN 240
+
Sbjct: 543 AE 544
Score = 93.4 bits (230), Expect = 3e-17, Method: Composition-based stats.
Identities = 35/234 (14%), Positives = 77/234 (32%), Gaps = 27/234 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----HGWITAEYGML 66
R + + V+ A G+ L+ +G+T +L+TAT EK I + G +
Sbjct: 12 RTLRVDVGRVAAQANGAALMHYGETVVLSTATASEKPREGIDFFPLSVEYEEKLYAVGKI 71
Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
P R G+ + R+I R +R + + + D
Sbjct: 72 PGGFNKR------EGKASENAILTSRVIDRPMRPLFPKDYRNDVTLNNLVMSVDPDCSPE 125
Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
A+ G+ +A G + G++ G + + + + + D
Sbjct: 126 LTAMLGSAIAT-------------AISDIPFDGPTSTTQVGLIDGEFVFNPNAAQRAVSD 172
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
+ T ++ ++ A +D + A + +I+ +++
Sbjct: 173 LQLTVASTRD-KVIMIEAGANEVP--EDKMIEAIFAAHEVNQQVIQFIDTIVAE 223
>gi|255073611|ref|XP_002500480.1| predicted protein [Micromonas sp. RCC299]
gi|226515743|gb|ACO61738.1| predicted protein [Micromonas sp. RCC299]
Length = 838
Score = 127 bits (318), Expect = 1e-27, Method: Composition-based stats.
Identities = 44/241 (18%), Positives = 81/241 (33%), Gaps = 14/241 (5%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
+R GR +R I+ + + GS L G+T + ATL + + + N K
Sbjct: 407 VRQDGRDTKTVRPITCSGGLLPRTHGSSLFTRGETQAIAAATLGGATDAQKVDGLGNDKD 466
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P S G + A S R+ G RAL V+ + ++
Sbjct: 467 RRFYLHYFFPPSSVGETGRVGAASRREVGHGNL----AERALMPVIPPYDDFPFTVRLES 522
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+ +++G + A + +AL D + + +L A + + D
Sbjct: 523 TITESNGSSSMATVCAGSLALQDAGVPITRKVAGIAMGLILGDESAGEA-----PVILTD 577
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED+ D+D G I Q + + L A+ + ++
Sbjct: 578 ILGSEDALGDMDFKVAGDGDG-ISAFQMDIKVEGITLAVLREALESARVGLVHILGEMDK 636
Query: 237 V 237
Sbjct: 637 A 637
Score = 71.8 bits (174), Expect = 9e-11, Method: Composition-based stats.
Identities = 29/217 (13%), Positives = 65/217 (29%), Gaps = 17/217 (7%)
Query: 13 EISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG 71
E+++ + + A G+ +V G+T + T V E T
Sbjct: 62 EVTVETGRIGRQANGAVMVTEGETVIYATICAGRDVTADGGFVPLTVNYQERYSAVGRTA 121
Query: 72 NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAIT 131
++ R+ I R++ R LR ++ QI+ T AIT
Sbjct: 122 GGYRKRDGGVRENET--LIGRLVDRPLRPMIPKGWAYDTQILEWVLSYDGARSTDALAIT 179
Query: 132 GAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANF 191
A A ++ ++ + P+++ + +D
Sbjct: 180 AASCAAAISDVPLKKPIAGVRVGLLP-----------GETEPLINPTCEQMERSRLDLVL 228
Query: 192 VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIA 228
T+ ++ ++G + + + +A
Sbjct: 229 AGTED-AVMMIEGFG--DFLTTQEMLYAIEKGHEAVA 262
>gi|187611320|sp|Q7UR95|PNP_RHOBA RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
Length = 753
Score = 127 bits (318), Expect = 1e-27, Method: Composition-based stats.
Identities = 46/241 (19%), Positives = 85/241 (35%), Gaps = 17/241 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R GR N +R I + GS L + G+T L T L +E+ +++
Sbjct: 316 RPDGRDHNSLRAIHCETDLLPRVHGSALFQRGETQALITIALGTSRDEQRVDGLQDEYSK 375
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
+Y S G R+ G R++ V+ + I + D
Sbjct: 376 KFMLDYNFPSYSVGECRPIRGPGRREIGHGCL----AERSVAPVLPSADDFPYTIRVISD 431
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ GA + L + + + V G I D+
Sbjct: 432 ITESNGSSSMASVCGATLGLMASGVPISNPVAGISVGLVQDGPDN--------WCLITDI 483
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T +G I +Q + + D A L +++ +++K
Sbjct: 484 LGTEDHFGDMDFKIAGTQNG-ITGIQLDLKVTGVTNDIIRATLKQSREARIEILKKMLTT 542
Query: 238 I 238
I
Sbjct: 543 I 543
Score = 109 bits (272), Expect = 4e-22, Method: Composition-based stats.
Identities = 41/227 (18%), Positives = 76/227 (33%), Gaps = 26/227 (11%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTA---TLEEKVPMWIRNTKHGWITAEYGMLPRS 69
+S ++K A GS LV++G+T +L A T + + + A G P
Sbjct: 17 LSFETGHIAKQAAGSVLVQYGETVVLVAAASGTPRPGIDFFPLMCDYRERLAAAGKFPGG 76
Query: 70 TGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAA 129
R GR + R++ R +R + Q+ A
Sbjct: 77 FLKR------EGRPSTKEILSSRLMDRPIRPLWPAGYKDEVQVQACVIASDLQNDGDVLA 130
Query: 130 ITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDA 189
+ G ALH KG + ++ G + G + + ++D
Sbjct: 131 MIGGATALH-------------ISPLPFKGPLGSVRVGKVDGKLVAFPTADQLEQSELDM 177
Query: 190 NFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ + ++G A +D + A D I ++I LQ++
Sbjct: 178 IVSGSRD-MVAMIEGFANE--MPEDEMMEAIGFAHDAIREVIDLQEE 221
>gi|312375907|gb|EFR23155.1| hypothetical protein AND_13423 [Anopheles darlingi]
Length = 246
Score = 127 bits (318), Expect = 1e-27, Method: Composition-based stats.
Identities = 54/242 (22%), Positives = 92/242 (38%), Gaps = 18/242 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+RL GR+ N++R I V +GS V+ G+T +L + N + +
Sbjct: 9 LRLDGRRANELRHIQCKLGVFSQPDGSAYVEQGNTKVLAAVYGPHQASSKKSNHEEAIVN 68
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
+Y M STG R K R +SQE+ + +AL + + + QI + +V+Q
Sbjct: 69 CQYSMATFSTGERKK----RPRGDRKSQEMTIHLKQALSAAIKMELYPRSQIDVYIEVLQ 124
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGG A++ A +AL D +++ S +
Sbjct: 125 ADGGNYCASVNAATLALIDAGICLKEYVC-----------ACTASLANGNVPLMDVSHLE 173
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
E+S + SG I ++ S F DH +L A ++ + +
Sbjct: 174 ENSGGPTLTVASLPSSGKIAFMEMS---QRFHLDHLPKVLETALKGCREVQNVIDRAVRE 230
Query: 241 EV 242
V
Sbjct: 231 HV 232
>gi|291546827|emb|CBL19935.1| polyribonucleotide nucleotidyltransferase [Ruminococcus sp. SR1/5]
Length = 697
Score = 127 bits (318), Expect = 1e-27, Method: Composition-based stats.
Identities = 38/240 (15%), Positives = 72/240 (30%), Gaps = 12/240 (5%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT--LEEKVPMWIRNTKHGWI 59
R GR+ Q+R ++ + GS + G T + T T +
Sbjct: 312 RPDGREIRQIRPLAAETDIIPRVHGSAMFTRGQTQ-ICTVTTLAPLTEAQRLDGLDEFET 370
Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119
+ Y V S G R + RAL V+ I +
Sbjct: 371 SKRYMHHYNFPSYSVGETKPSRGPGRREIGHGALAERALVPVLPTEEEFPYAIRTVSETF 430
Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179
+++G T A+I + ++L + V + D+
Sbjct: 431 ESNGSTSQASICASTMSLMAAGVPIRKPVAGISCGLV-------TGETDDDYIVLTDIQG 483
Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI-KLQKDVI 238
ED D+D T G I +Q + ++ + K+ ++ ++ + I
Sbjct: 484 LEDFFGDMDFKVAGTHDG-ITAIQMDIKIHGLTRPIVEEAIRRTKEAREYILTEVMEKCI 542
Score = 102 bits (254), Expect = 5e-20, Method: Composition-based stats.
Identities = 38/234 (16%), Positives = 80/234 (34%), Gaps = 27/234 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----HGWITAEYGML 66
R +++ V+K A G+ L+ +GDT +L TAT ++ I + G +
Sbjct: 12 RTLTVDIGRVAKQANGAALMHYGDTTVLATATASKEPREGIDFFPLSVEYEEKMYAVGKI 71
Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
P R G+ + R+I R +R + ++ + +
Sbjct: 72 PGGFNKR------EGKASEHAILTSRVIDRPMRPLFPKDYRNDVTLVDMVMSVDPECNPE 125
Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
A+ G+ +A G A GM+ G I++ + + D
Sbjct: 126 IPAMLGSSIATC-------------ISDIPFDGPCATTQVGMIDGEFIINPTLAQKAVSD 172
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
+ T ++ ++ A +D + A + ++IK +++
Sbjct: 173 LQLTVASTRE-KVIMIEAGANE--IPEDKMIEAIYKAHEVNQEIIKFIDQIVAE 223
>gi|295116235|emb|CBL37082.1| polyribonucleotide nucleotidyltransferase [butyrate-producing
bacterium SM4/1]
Length = 703
Score = 127 bits (318), Expect = 1e-27, Method: Composition-based stats.
Identities = 41/245 (16%), Positives = 78/245 (31%), Gaps = 18/245 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL-----EEKVPMWIRNTKH 56
R GR ++R ++ + GS + G T +L TL +K+ N
Sbjct: 312 RPDGRGITEIRPLAAEIDLLPRVHGSGMFTRGQTQILNICTLAPLSEAQKLDGLDENETS 371
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y S G R+ G RAL V+ I
Sbjct: 372 KRYMHHYNFPSYSVGETKPSRGPGRREIGHGAL----AERALIPVLPSEEEFPYAIRTVS 427
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+ ++++G T A+I + ++L ++ V + D
Sbjct: 428 ETMESNGSTSQASICASTLSLMAAGVPIKAPVAGISCGLV-------TGDTDDDYIVLTD 480
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI-KLQK 235
+ ED D+D T G I +Q + ++ + ++ ++ ++ K
Sbjct: 481 IQGLEDFFGDMDFKVGGTHKG-ITSIQMDIKIHGLTRPIIEEAIAKTREARLYILDEIMK 539
Query: 236 DVISN 240
VI+
Sbjct: 540 PVIAE 544
Score = 94.5 bits (233), Expect = 1e-17, Method: Composition-based stats.
Identities = 39/234 (16%), Positives = 76/234 (32%), Gaps = 27/234 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----HGWITAEYGML 66
R +++ V+ A G+ + +GDT +L+TAT +K I G +
Sbjct: 12 RTLTVDVGRVAAQANGAAFMHYGDTTVLSTATASDKPREGIDFFPLSVEFEEKMYAVGKI 71
Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
P R G+ + R+I R +R + + + D
Sbjct: 72 PGGFNKR------EGKASENAVLTARVIDRPMRPLFPKDYRNDVTLNNLVLSVDPDCSPE 125
Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
A+ G+ +A G A GM+ G IV+ + D
Sbjct: 126 YTAMLGSAIATC-------------ISDIPFDGPCATTQIGMIDGEFIVNPTSAQRKVSD 172
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
+ T ++ ++ A +D + A + ++IK +++
Sbjct: 173 MALTVASTRE-KVIMIEAGANEVP--EDVMIQAIFKAHEVNQEIIKFIDTIVAE 223
>gi|283798318|ref|ZP_06347471.1| polyribonucleotide nucleotidyltransferase [Clostridium sp. M62/1]
gi|291073901|gb|EFE11265.1| polyribonucleotide nucleotidyltransferase [Clostridium sp. M62/1]
Length = 703
Score = 127 bits (318), Expect = 2e-27, Method: Composition-based stats.
Identities = 41/245 (16%), Positives = 78/245 (31%), Gaps = 18/245 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL-----EEKVPMWIRNTKH 56
R GR ++R ++ + GS + G T +L TL +K+ N
Sbjct: 312 RPDGRGITEIRPLAAEIDLLPRVHGSGMFTRGQTQILNICTLAPLSEAQKLDGLDENETS 371
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y S G R+ G RAL V+ I
Sbjct: 372 KRYMHHYNFPSYSVGETKPSRGPGRREIGHGAL----AERALIPVLPSEEEFPYAIRTVS 427
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+ ++++G T A+I + ++L ++ V + D
Sbjct: 428 ETMESNGSTSQASICASTLSLMAAGVPIKAPVAGISCGLV-------TGDTDDDYIVLTD 480
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI-KLQK 235
+ ED D+D T G I +Q + ++ + ++ ++ ++ K
Sbjct: 481 IQGLEDFFGDMDFKVGGTHKG-ITSIQMDIKIHGLTRPIIEEAIAKTREARLYILDEIMK 539
Query: 236 DVISN 240
VI+
Sbjct: 540 PVIAE 544
Score = 94.5 bits (233), Expect = 1e-17, Method: Composition-based stats.
Identities = 39/234 (16%), Positives = 76/234 (32%), Gaps = 27/234 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----HGWITAEYGML 66
R +++ V+ A G+ + +GDT +L+TAT +K I G +
Sbjct: 12 RTLTVDVGRVAAQANGAAFMHYGDTTVLSTATASDKPREGIDFFPLSVEFEEKMYAVGKI 71
Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
P R G+ + R+I R +R + + + D
Sbjct: 72 PGGFNKR------EGKASENAVLTARVIDRPMRPLFPKDYRNDVTLNNLVLSVDPDCSPE 125
Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
A+ G+ +A G A GM+ G IV+ + D
Sbjct: 126 YTAMLGSAIATC-------------ISDIPFDGPCATTQIGMIDGEFIVNPTSAQRKVSD 172
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
+ T ++ ++ A +D + A + ++IK +++
Sbjct: 173 MALTVASTRE-KVIMIEAGANEVP--EDVMIQAIFKAHEVNQEIIKFIDTIVAE 223
>gi|303273102|ref|XP_003055912.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226461996|gb|EEH59288.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 823
Score = 127 bits (318), Expect = 2e-27, Method: Composition-based stats.
Identities = 38/236 (16%), Positives = 71/236 (30%), Gaps = 6/236 (2%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R GR +R IS GS L G+T + ATL + +
Sbjct: 376 RQDGRDVYTVRPISCEGGFLHRTHGSSLFTRGETQAIAAATLGSQSDAQRFDGIAEMDDR 435
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
+ + + V G R + RAL V+ + ++ + ++
Sbjct: 436 RFYLHYFFPPSSVGECGRVGAASRREVGHGNLAERALAPVLPSKDEFPFTVRLESTITES 495
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
+G + A + +AL D + + VL + D+ E
Sbjct: 496 NGSSSMATVCAGCLALQDAGVPIRRKVAGIAMGLVLGDETKG-----EDAIVLTDILGSE 550
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
D+ D+D G + Q + S L A++ + ++
Sbjct: 551 DALGDMDFKVAGDGEG-MSAFQMDIKVEGISLPVMRTALERAREGLIHILGEMDKA 605
Score = 59.9 bits (143), Expect = 3e-07, Method: Composition-based stats.
Identities = 32/204 (15%), Positives = 60/204 (29%), Gaps = 17/204 (8%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGN 72
+ + + K A G+ +V G+T + T V E T
Sbjct: 34 VVVETGKIGKQANGAVIVSEGETQMYVTICAGRDVVADGGFVPLTVNYMERFSAAGRTSG 93
Query: 73 RVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITG 132
++ R+ I R++ R LR ++ + QI+ + T AIT
Sbjct: 94 GYRKRDGGVREHET--LIGRLVDRPLRPMIPKAWAYETQILQWVLSYDGNRSTDALAITA 151
Query: 133 AWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFV 192
A A + + + PIV+ + +D
Sbjct: 152 ASAAAAVSDVPLSKPVCGVR-----------VGFLPGDATPIVNPTTEQMENSRLDLLLA 200
Query: 193 MTDSGHIVEVQGSAERATFSQDHF 216
T+ ++ ++G S D
Sbjct: 201 GTED-AVMMIEGYG--DFLSVDEM 221
>gi|302387373|ref|YP_003823195.1| polyribonucleotide nucleotidyltransferase [Clostridium
saccharolyticum WM1]
gi|302198001|gb|ADL05572.1| polyribonucleotide nucleotidyltransferase [Clostridium
saccharolyticum WM1]
Length = 709
Score = 127 bits (318), Expect = 2e-27, Method: Composition-based stats.
Identities = 38/241 (15%), Positives = 74/241 (30%), Gaps = 10/241 (4%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL-EEKVPMWIRNTKHGWIT 60
R GR +Q+R ++ + GS + G T +L TL + +
Sbjct: 312 RPDGRAMDQIRHLAAEIDMLPRVHGSAMFTRGQTQILNICTLAPLSESQRLDGIDDMETS 371
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
Y V S G R + RAL V+ I + ++
Sbjct: 372 KRYMHHYNFPSFSVGETKPSRGPGRREIGHGALAERALIPVLPSEEEFPYAIRTVSETME 431
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
++G T A+I + ++L ++ V + D+
Sbjct: 432 SNGSTSQASICSSSMSLMAAGVPIKAAVAGISCGLV-------TGDTDDDYIVLTDIQGL 484
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI-KLQKDVIS 239
ED D+D T G I +Q + ++ + + ++ ++ I+
Sbjct: 485 EDFFGDMDFKVGGTHKG-ITAIQMDIKIHGLTRPIIEEAIRTTRKARLYILDEVMAKAIA 543
Query: 240 N 240
Sbjct: 544 E 544
Score = 99.5 bits (246), Expect = 4e-19, Method: Composition-based stats.
Identities = 38/234 (16%), Positives = 78/234 (33%), Gaps = 27/234 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----HGWITAEYGML 66
R +++ V+K A G+ + +GDT +L TAT +K I + G +
Sbjct: 12 RTLTVDVGRVAKQANGAAFMHYGDTVVLATATASDKPRDGIDFFPLSVEYEEKLYAVGKI 71
Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
P R G+ + R+I R +R + + + D
Sbjct: 72 PGGFNKR------EGKASENAILTSRVIDRPMRPLFPKDYRNDVTLDNIVMSVDQDCSPE 125
Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
A+ G+ +A G A+ G++ G +V+ + D
Sbjct: 126 LTAMLGSAIATC-------------ISDIPFDGPCASTQIGLVDGELVVNPTQAQKQVSD 172
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
+ T ++ ++ A +D + A + ++IK +++
Sbjct: 173 MALTVASTRE-KVIMIEAGANEVP--EDKMIEAIFKAHEVNQEIIKFIDTIVAE 223
>gi|295092781|emb|CBK78888.1| polyribonucleotide nucleotidyltransferase [Clostridium cf.
saccharolyticum K10]
Length = 703
Score = 127 bits (318), Expect = 2e-27, Method: Composition-based stats.
Identities = 41/245 (16%), Positives = 78/245 (31%), Gaps = 18/245 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL-----EEKVPMWIRNTKH 56
R GR ++R ++ + GS + G T +L TL +K+ N
Sbjct: 312 RPDGRGITEIRPLAAEIDLLPRVHGSGMFTRGQTQILNICTLAPLSEAQKLDGLDENETS 371
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y S G R+ G RAL V+ I
Sbjct: 372 KRYMHHYNFPSYSVGETKPSRGPGRREIGHGAL----AERALIPVLPSEEEFPYAIRTVS 427
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+ ++++G T A+I + ++L ++ V + D
Sbjct: 428 ETMESNGSTSQASICASTLSLMAAGVPIKAPVAGISCGLV-------TGDTDDDYIVLTD 480
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI-KLQK 235
+ ED D+D T G I +Q + ++ + ++ ++ ++ K
Sbjct: 481 IQGLEDFFGDMDFKVGGTYKG-ITSIQMDIKIHGLTRPIIEEAIAKTREARLYILDEIMK 539
Query: 236 DVISN 240
VI+
Sbjct: 540 PVIAE 544
Score = 94.5 bits (233), Expect = 1e-17, Method: Composition-based stats.
Identities = 39/234 (16%), Positives = 76/234 (32%), Gaps = 27/234 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----HGWITAEYGML 66
R +++ V+ A G+ + +GDT +L+TAT +K I G +
Sbjct: 12 RTLTVDVGRVAAQANGAAFMHYGDTTVLSTATASDKPREGIDFFPLSVEFEEKMYAVGKI 71
Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
P R G+ + R+I R +R + + + D
Sbjct: 72 PGGFNKR------EGKASENAVLTARVIDRPMRPLFPKDYRNDVTLNNLVLSVDPDCSPE 125
Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
A+ G+ +A G A GM+ G IV+ + D
Sbjct: 126 YTAMLGSAIATC-------------ISDIPFDGPCATTQIGMIDGEFIVNPTSAQRKVSD 172
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
+ T ++ ++ A +D + A + ++IK +++
Sbjct: 173 MALTVASTRE-KVIMIEAGANEVP--EDVMIQAIFKAHEVNQEIIKFIDTIVAE 223
>gi|291562544|emb|CBL41360.1| polyribonucleotide nucleotidyltransferase [butyrate-producing
bacterium SS3/4]
Length = 739
Score = 127 bits (318), Expect = 2e-27, Method: Composition-based stats.
Identities = 40/245 (16%), Positives = 78/245 (31%), Gaps = 18/245 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL-----EEKVPMWIRNTKH 56
R GR+ +++R ++ + GS + G T +L TL +++ N
Sbjct: 312 RPDGRRIDEIRPLAAEIDILPRVHGSGMFTRGQTQILNACTLAPLSEAQRLDGLDENETT 371
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y S G R+ G RAL V+ I
Sbjct: 372 KRYMHHYNFPSFSVGETKPSRGPGRREIGHGAL----AERALVPVLPSEEEFPYAIRTVS 427
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+ ++++G T A+I + ++L ++ V + D
Sbjct: 428 ETMESNGSTSQASICASTLSLMAAGVPIKTMVAGISCGLV-------TGETDDDYIVLTD 480
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK-LQK 235
+ ED D+D T G I +Q + ++ + ++ ++ +
Sbjct: 481 IQGLEDFFGDMDFKVGGTHEG-ITAIQMDIKIHGLTRPIIEEAIRRCREARLYIMDNIMA 539
Query: 236 DVISN 240
VIS
Sbjct: 540 PVISE 544
Score = 97.2 bits (240), Expect = 2e-18, Method: Composition-based stats.
Identities = 36/234 (15%), Positives = 78/234 (33%), Gaps = 27/234 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----HGWITAEYGML 66
R +++ V+K A G+ + +GDT +L+TAT +K I + G +
Sbjct: 12 RTLTVEVGRVAKQANGAAFMHYGDTVVLSTATASDKPRDGIDFFPLSVEYEEKLYSVGKI 71
Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
P R G+ + R+I R +R + + + +
Sbjct: 72 PGGFTKR------EGKASENATLTSRVIDRPMRPLFPKDYRNDVTLDNIVMSVDPECSPE 125
Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
A+ G+ +A G A G++ G I++ + D
Sbjct: 126 LTAMLGSAIATC-------------ISDIPFDGPCAMTQVGLIDGEFIINPTSTQKKVSD 172
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
+ T ++ ++ A+ + + A + ++IK +++
Sbjct: 173 LALTVASTRE-KVIMIEAGAKEVP--EQTMINAIFKAHEVNQEIIKFIDRIVAE 223
>gi|332749902|gb|EGJ80314.1| ribonuclease PH [Shigella flexneri K-671]
Length = 211
Score = 127 bits (318), Expect = 2e-27, Method: Composition-based stats.
Identities = 111/212 (52%), Positives = 145/212 (68%), Gaps = 2/212 (0%)
Query: 29 LVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQ 88
LV+FGDT +L TA++EE VP +++ GWITAEYGMLPRST R REA G+QGGR+
Sbjct: 2 LVEFGDTKVLCTASIEEGVPRFLKGQGQGWITAEYGMLPRSTHTRNAREAAKGKQGGRTM 61
Query: 89 EIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCS 148
EIQR+I RALR+ VDL ALG I +DCDV+QADGGTRTA+ITGA VAL D LQ + +
Sbjct: 62 EIQRLIARALRAAVDLKALGEFTITLDCDVLQADGGTRTASITGACVALADALQKLVEN- 120
Query: 149 NKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAER 208
+ +KG VAA+S G++ G I DL+Y EDS + D N VMT+ G I+EVQG+AE
Sbjct: 121 -GKLKTNPMKGMVAAVSVGIVNGEAICDLEYVEDSAAETDMNVVMTEDGRIIEVQGTAEG 179
Query: 209 ATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
F+ + +L LA+ I ++ QK ++N
Sbjct: 180 EPFTHEELLTLLALARGGIESIVATQKAALAN 211
>gi|297821020|ref|XP_002878393.1| hypothetical protein ARALYDRAFT_486650 [Arabidopsis lyrata subsp.
lyrata]
gi|297324231|gb|EFH54652.1| hypothetical protein ARALYDRAFT_486650 [Arabidopsis lyrata subsp.
lyrata]
Length = 241
Score = 127 bits (318), Expect = 2e-27, Method: Composition-based stats.
Identities = 62/243 (25%), Positives = 107/243 (44%), Gaps = 24/243 (9%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKV--PMWIRNTKHGW 58
+RL GR+ N+MR+I V A+GS + + G+T ++ ++ + H
Sbjct: 9 LRLDGRRFNEMRQIVAEVGVVSKADGSAVFEMGNTKVIAAVYGPREIQNKSQQKKNDHAV 68
Query: 59 ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDV 118
+ EY M STG+R + + RS E+ +I + + + + + QI I V
Sbjct: 69 VLCEYSMAQFSTGDRRR-----QKFDRRSTELSLVIRQTMEACILTELMPHSQIDIFLQV 123
Query: 119 IQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLD 178
+QADGGTR+A I A +AL D M D + + S G L P++DL+
Sbjct: 124 LQADGGTRSACINAATLALADAGIPMRDLA-------------VSCSAGYLNSTPLLDLN 170
Query: 179 YGEDSTIDVDANF-VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
Y EDS D ++ + +Q A+ + F + LA + + + ++V
Sbjct: 171 YVEDSAGGADVTVGILPKLDKVTLLQMDAK---LPMETFETVFALASEGCKAIAERIREV 227
Query: 238 ISN 240
+
Sbjct: 228 LQE 230
>gi|315186954|gb|EFU20712.1| RNAse PH [Spirochaeta thermophila DSM 6578]
Length = 223
Score = 126 bits (317), Expect = 2e-27, Method: Composition-based stats.
Identities = 96/226 (42%), Positives = 130/226 (57%), Gaps = 5/226 (2%)
Query: 14 ISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGNR 73
+S V Y GSCLV FG+T +L A++EE VP +I GW+TAEY MLP S
Sbjct: 1 MSFEVGVLAYPAGSCLVSFGNTKVLCAASIEEGVPPFIEQEGEGWLTAEYAMLPASVPEG 60
Query: 74 VKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGA 133
KR R IQR IGR+LR+ +D + LG I+IDCDV+QADGGTRTAAI+G
Sbjct: 61 RKRRERDSRAVE----IQRFIGRSLRAALDRTRLGPYTIVIDCDVLQADGGTRTAAISGG 116
Query: 134 WVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVM 193
WVAL+ L+ + + L G VAA+S G++ G + DLD+ D VD N VM
Sbjct: 117 WVALYQALEKLAELHGVEGPEYFLAGQVAAVSVGIVEGQLVADLDFAHDLAAQVDMNVVM 176
Query: 194 TDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
+VEVQG+ E+ F+++ AML+LA I + + Q+ +
Sbjct: 177 C-DDRLVEVQGNGEKGAFTREELDAMLDLAAQEIGLIYEAQRAALG 221
>gi|222623250|gb|EEE57382.1| hypothetical protein OsJ_07542 [Oryza sativa Japonica Group]
Length = 941
Score = 126 bits (317), Expect = 2e-27, Method: Composition-based stats.
Identities = 50/283 (17%), Positives = 90/283 (31%), Gaps = 46/283 (16%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56
+R+ GRQ +++R + GS L GDT +L T T + + I
Sbjct: 294 LRVDGRQLDEVRPLYCESSTYPILHGSALFSRGDTQVLCTVTLGAPGDAQRLDSIVGPPT 353
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRM----------------------- 93
Y P S KR ++ R+ G +
Sbjct: 354 KRFMLHYSFPPFSINEVAKRGGLNRREVGHDGLHGPIRLGDELRVWIEHKALDPTGFLLT 413
Query: 94 ----------------IGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVAL 137
+AL +V+ + ++ +V+ +DG T A++ G +AL
Sbjct: 414 NRLVFWERQWLSAGTLAEKALLAVLPPEGEFPYTVRVNSEVMASDGSTSMASVCGGSMAL 473
Query: 138 HDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSG 197
D + + + V + + + + D+ ED D+D T G
Sbjct: 474 MDAGIPVREHVAGVSVGLVSEVDQ--TTGDISSYRILTDILGLEDHLGDMDFKIAGTRRG 531
Query: 198 HIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
I +Q + A D L A+ ++ IS+
Sbjct: 532 -ITAIQLDIKPAGIPLDIICESLEPARKARNQILDRMDQEISS 573
Score = 76.0 bits (185), Expect = 4e-12, Method: Composition-based stats.
Identities = 31/215 (14%), Positives = 64/215 (29%), Gaps = 18/215 (8%)
Query: 20 VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGNRVKREAV 79
++++A GS ++ DTH+L+T + E R
Sbjct: 1 MARFANGSVVISMDDTHVLSTVAAAKSSEPVRDFLPLTVDYQEKQYAQGVIPTTYMRREG 60
Query: 80 SGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVALHD 139
+ ++ R+I R +R + QI+++ A + AL
Sbjct: 61 APKEREL--LCGRIIDRPIRPLFPPGFYHEVQIMVNVISSDGKQDPDVMAANASSAALM- 117
Query: 140 CLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHI 199
G + I G + G +++ E D++ + + +
Sbjct: 118 ------------LSDIPWNGPIGVIRVGRIDGNFVLNPTVDELGLSDLNLVYACSRDKTL 165
Query: 200 VEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
+ A ++ A + LA I Q
Sbjct: 166 -MIDVQARE--ITERDLQAGMKLAHAEAVKCINPQ 197
>gi|313887414|ref|ZP_07821103.1| polyribonucleotide nucleotidyltransferase [Porphyromonas
asaccharolytica PR426713P-I]
gi|332299600|ref|YP_004441521.1| Polyribonucleotide nucleotidyltransferase [Porphyromonas
asaccharolytica DSM 20707]
gi|312923056|gb|EFR33876.1| polyribonucleotide nucleotidyltransferase [Porphyromonas
asaccharolytica PR426713P-I]
gi|332176663|gb|AEE12353.1| Polyribonucleotide nucleotidyltransferase [Porphyromonas
asaccharolytica DSM 20707]
Length = 736
Score = 126 bits (317), Expect = 2e-27, Method: Composition-based stats.
Identities = 50/240 (20%), Positives = 88/240 (36%), Gaps = 18/240 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
RL GR+ N++R I + GS + G+T L+T TL +EK+ + N
Sbjct: 318 RLDGRRTNEIRPIWIETDCLPGPHGSAIFTRGETQSLSTVTLGTKSDEKLVDDVLNYGKE 377
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P STG +S R+ G RAL+ ++ I + D
Sbjct: 378 RFLLHYNFPPFSTGEAKASRGISRREIGHGNL----AHRALKRMIPEDY--PYVIRVMSD 431
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+++++G + A + +AL D M+ + + + + + D+
Sbjct: 432 ILESNGSSSMATVCAGTLALRDAGVQMKKPVSGIAMGLISE-------NKGTNYAILSDI 484
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T G I Q + S + L AK ++ ++
Sbjct: 485 LGDEDHLGDMDFKVTGTRDG-ITATQMDIKVDGLSYEILAKALAQAKAGRLHILDKIEEA 543
Score = 82.2 bits (201), Expect = 5e-14, Method: Composition-based stats.
Identities = 36/245 (14%), Positives = 73/245 (29%), Gaps = 34/245 (13%)
Query: 3 LSGRQENQMREISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----HG 57
GR I++ ++K A+G+ V G T LL T ++ + +
Sbjct: 12 PDGRT------ITIETGKLAKQADGAVTVTMGSTVLLAAVTAAKEAKPDVDFMPLQVEYK 65
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
+ G P R GR R++ RALR + + I
Sbjct: 66 EKYSAVGRFPGGFTRR------EGRASDYEILTCRLVDRALRPLFPDDYHAEVYVNIILF 119
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
L + + G ++ + + G +++
Sbjct: 120 SSDGVDMPDA-------------LAGLAASAALAVSDIPFGGPISEVRVARIDGEFVINP 166
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
+ + D+D T +I+ E ++ + +A + I + Q +
Sbjct: 167 TFEQLERADIDLMVAAT-LDNIMM--VEGEMEEVQEEEMLEAIKVAHEAIKVQCQAQLE- 222
Query: 238 ISNEV 242
+S V
Sbjct: 223 LSEAV 227
>gi|228469449|ref|ZP_04054457.1| polyribonucleotide nucleotidyltransferase [Porphyromonas uenonis
60-3]
gi|228309024|gb|EEK17667.1| polyribonucleotide nucleotidyltransferase [Porphyromonas uenonis
60-3]
Length = 736
Score = 126 bits (317), Expect = 2e-27, Method: Composition-based stats.
Identities = 49/240 (20%), Positives = 88/240 (36%), Gaps = 18/240 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
RL GR+ +++R I + GS + G+T L+T TL +EK+ + N
Sbjct: 318 RLDGRRTDEIRPIWIETDCLPGPHGSAIFTRGETQSLSTVTLGTKSDEKLVDDVLNYGKE 377
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P STG +S R+ G RAL+ ++ I + D
Sbjct: 378 RFLLHYNFPPFSTGEAKASRGISRREIGHGNL----AHRALKRMIPEDY--PYVIRVMSD 431
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+++++G + A + +AL D M+ + + + + + D+
Sbjct: 432 ILESNGSSSMATVCAGTLALRDAGVQMKKPVSGIAMGLISE-------NKGTNYAILSDI 484
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED D+D T G I Q + S + L AK ++ ++
Sbjct: 485 LGDEDHLGDMDFKVTGTRDG-ITATQMDIKVDGLSYEILAKALAQAKAGRLHILNKIEEA 543
Score = 81.0 bits (198), Expect = 1e-13, Method: Composition-based stats.
Identities = 34/241 (14%), Positives = 68/241 (28%), Gaps = 26/241 (10%)
Query: 3 LSGRQENQMREISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
GR I++ ++K A+G+ V G T LL T + +
Sbjct: 12 PDGRT------ITIETGKLAKQADGAVTVTMGSTVLLAAVTAAKDAKPDVDFMPLQVEYK 65
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
E GR R++ RALR + + I
Sbjct: 66 EKFSAIGRFP--GGFTRREGRASDYEILTCRLVDRALRPLFPDDYHAEVYVNIILFSSDG 123
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
L + + G ++ + + G +++ + +
Sbjct: 124 VDMPDA-------------LAGLAASAALAVSDIPFGGPISEVRVARVDGDFVINPTFEQ 170
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
D+D T +I+ E ++ + +A + I + Q + +S
Sbjct: 171 LERADIDLMVAAT-LDNIMM--VEGEMEEVQEEEMLEAIKVAHEAIKVQCQAQLE-LSEA 226
Query: 242 V 242
V
Sbjct: 227 V 227
>gi|167745605|ref|ZP_02417732.1| hypothetical protein ANACAC_00297 [Anaerostipes caccae DSM 14662]
gi|167654917|gb|EDR99046.1| hypothetical protein ANACAC_00297 [Anaerostipes caccae DSM 14662]
Length = 713
Score = 126 bits (317), Expect = 2e-27, Method: Composition-based stats.
Identities = 40/245 (16%), Positives = 77/245 (31%), Gaps = 18/245 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE-----EKVPMWIRNTKH 56
R GR ++R ++ GS L + G T ++T TL +++ ++
Sbjct: 330 RPDGRDITEIRHLAAEVDCLPRVHGSALFQRGQTQVMTVTTLGSLSEAQRLDGMDQDETS 389
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y S G R+ G RAL V+ I
Sbjct: 390 KRYMHHYNFPSYSVGETRPSRGPGRREIGHGAL----AERALIPVLPTEEEFPYAIRTVS 445
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
++++++G T +I + ++L ++ + V + D
Sbjct: 446 EIMESNGSTSQGSICASSLSLMAAGVPVKAPVAGISVGLV-------TGDSDDDYLILTD 498
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADL-IKLQK 235
+ ED D+D TD G I +Q + + + K+ + +
Sbjct: 499 IQGLEDFFGDMDFKVAGTDKG-ITAIQMDIKIHGLTDQIIREAIARTKEARTYILHDVMN 557
Query: 236 DVISN 240
VI
Sbjct: 558 PVIGE 562
Score = 99.5 bits (246), Expect = 4e-19, Method: Composition-based stats.
Identities = 35/234 (14%), Positives = 76/234 (32%), Gaps = 27/234 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----HGWITAEYGML 66
R +++ V+ A G+ + +GDT +L+TAT +K I + G +
Sbjct: 30 RTLTVEVGRVAAQANGAAFMHYGDTVVLSTATASDKPRDGIDFFPLSVEYEEKQYAVGKI 89
Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
P R R + R+I R +R + + + D
Sbjct: 90 PGGFLKR------EARPSENAILTDRVIDRPMRPLFPKDYRNDVLLDNLVMSVDPDCSPE 143
Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
A+ G+ +A G A+ G++ G I++ + +
Sbjct: 144 LTAMLGSAIATC-------------ISDIPFDGPTASTMVGLIDGEFIINPTAAQKEVSE 190
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
+ T ++ ++ A +D + A + ++I +++
Sbjct: 191 MSLTVASTRE-KVIMIEAGANEVP--EDIMIEAIFKAHEVNKEIIAFIDTIVAE 241
>gi|322785621|gb|EFZ12276.1| hypothetical protein SINV_11817 [Solenopsis invicta]
Length = 692
Score = 126 bits (317), Expect = 2e-27, Method: Composition-based stats.
Identities = 48/248 (19%), Positives = 86/248 (34%), Gaps = 17/248 (6%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE--------EKVPMWIR 52
+R GR + +R+IS + GS L + G T ++ TL+ + + M I
Sbjct: 278 VRCDGRPMDGIRDISCQVDLFNPLHGSALFQRGQTQVMCAVTLDSLQSALKMDTISMLIS 337
Query: 53 NTKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQI 112
K Y P +T R+ G +ALR V+ I
Sbjct: 338 GMKEKNFFLHYEFPPYATNETGHASRAGRRELGHGAL----AEKALRPVLPKDYPF--TI 391
Query: 113 IIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY 172
+ +V++++G + A + G +AL D + + + V K + +
Sbjct: 392 RLTSEVLESNGSSSMATVCGGSLALLDAGIPISSPTAGVAIGLVTKC--NETNTNIENYK 449
Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
+ D+ ED D+D T G +Q + + + A + +IK
Sbjct: 450 ILTDILGIEDYLGDMDFKIAGTKRG-FTALQADIKISGVPLKIIMECIQQATNAKLQIIK 508
Query: 233 LQKDVISN 240
VI
Sbjct: 509 TMNTVIRE 516
>gi|326791492|ref|YP_004309313.1| polyribonucleotide nucleotidyltransferase [Clostridium lentocellum
DSM 5427]
gi|326542256|gb|ADZ84115.1| polyribonucleotide nucleotidyltransferase [Clostridium lentocellum
DSM 5427]
Length = 705
Score = 126 bits (317), Expect = 2e-27, Method: Composition-based stats.
Identities = 42/239 (17%), Positives = 76/239 (31%), Gaps = 10/239 (4%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEE-KVPMWIRNTKHGWIT 60
R GR +++R ++ + G+ L G T +LT TL + I+
Sbjct: 315 RPDGRALDEIRSLAAEVDLVPRVHGTGLFTRGQTQVLTVTTLAALSEMQTLDGLDELEIS 374
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
Y V G R + RAL V+ I +V+
Sbjct: 375 KRYMHHYNFPPYSVGEARAPRAPGRREIGHGALAERALVPVLPTEQEFPYAIRTVSEVLS 434
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
++G T A+I G+ ++L ++ + V + D+
Sbjct: 435 SNGSTSQASICGSTLSLMAAGVPIKAPVAGISVGLV-------TGETADDFVLLTDIQGL 487
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI-KLQKDVI 238
ED D+D T G I +Q + + + L K ++ ++ I
Sbjct: 488 EDFFGDMDFKVGGTHKG-ITAIQMDMKIKGLTPEIIKGALENTKKARFYILDEIMLKAI 545
Score = 96.5 bits (238), Expect = 3e-18, Method: Composition-based stats.
Identities = 38/235 (16%), Positives = 77/235 (32%), Gaps = 28/235 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKHGWITAEYGML 66
RE+S+ V+ A GS V++GDT +L T E + + + + G L
Sbjct: 12 RELSVEIGKVAGLANGSATVRYGDTMILATVVAADAPKEGIDFFPLSVNYEEKFYSVGRL 71
Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
P R R ++ R+I R +R + I + D
Sbjct: 72 PGGYIKR------ESRPSEKAILTSRVIDRPMRPLFPKDYRNDVVITTTVLSVDQDCSPE 125
Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
A+ A + + G V ++ G++ G + + + E D
Sbjct: 126 VTAMIAASLVVD-------------ISDIPFAGPVGSVQVGLVDGNLVFNPNQEERQKSD 172
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
+ T ++ ++ A +D F + + +++ + I +
Sbjct: 173 LALTVSSTKD-KVMMIEAGANEVP--EDIMFDAIMKGHEFNQQVVQFI-EAIKAD 223
>gi|317472798|ref|ZP_07932109.1| polyribonucleotide nucleotidyltransferase [Anaerostipes sp.
3_2_56FAA]
gi|316899717|gb|EFV21720.1| polyribonucleotide nucleotidyltransferase [Anaerostipes sp.
3_2_56FAA]
Length = 695
Score = 126 bits (317), Expect = 2e-27, Method: Composition-based stats.
Identities = 40/245 (16%), Positives = 77/245 (31%), Gaps = 18/245 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE-----EKVPMWIRNTKH 56
R GR ++R ++ GS L + G T ++T TL +++ ++
Sbjct: 312 RPDGRDITEIRHLAAEVDCLPRVHGSALFQRGQTQVMTVTTLGSLSEAQRLDGMDQDETS 371
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y S G R+ G RAL V+ I
Sbjct: 372 KRYMHHYNFPSYSVGETRPSRGPGRREIGHGAL----AERALIPVLPTEEEFPYAIRTVS 427
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
++++++G T +I + ++L ++ + V + D
Sbjct: 428 EIMESNGSTSQGSICASSLSLMAAGVPVKAPVAGISVGLV-------TGDSDDDYLILTD 480
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADL-IKLQK 235
+ ED D+D TD G I +Q + + + K+ + +
Sbjct: 481 IQGLEDFFGDMDFKVAGTDKG-ITAIQMDIKIHGLTDQIIREAIARTKEARTYILHDVMN 539
Query: 236 DVISN 240
VI
Sbjct: 540 PVIGE 544
Score = 99.1 bits (245), Expect = 4e-19, Method: Composition-based stats.
Identities = 35/234 (14%), Positives = 76/234 (32%), Gaps = 27/234 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----HGWITAEYGML 66
R +++ V+ A G+ + +GDT +L+TAT +K I + G +
Sbjct: 12 RTLTVEVGRVAAQANGAAFMHYGDTVVLSTATASDKPRDGIDFFPLSVEYEEKQYAVGKI 71
Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
P R R + R+I R +R + + + D
Sbjct: 72 PGGFLKR------EARPSENAILTDRVIDRPMRPLFPKDYRNDVLLDNLVMSVDPDCSPE 125
Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
A+ G+ +A G A+ G++ G I++ + +
Sbjct: 126 LTAMLGSAIATC-------------ISDIPFDGPTASTMVGLIDGEFIINPTAAQKEVSE 172
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
+ T ++ ++ A +D + A + ++I +++
Sbjct: 173 MSLTVASTRE-KVIMIEAGANEVP--EDIMIEAIFKAHEVNKEIIAFIDTIVAE 223
>gi|195449886|ref|XP_002072269.1| GK22421 [Drosophila willistoni]
gi|194168354|gb|EDW83255.1| GK22421 [Drosophila willistoni]
Length = 769
Score = 126 bits (317), Expect = 2e-27, Method: Composition-based stats.
Identities = 44/248 (17%), Positives = 82/248 (33%), Gaps = 17/248 (6%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIR--------- 52
R GR + +R IS + K GS L + G T + T +L+
Sbjct: 353 RCDGRDFDSLRNISCQVDMYKPLHGSALFQRGQTQVFCTVSLDSPESAMKLDSLAALESG 412
Query: 53 NTKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQI 112
K Y P +TG + + R+ G RAL + +
Sbjct: 413 GLKSKNFMLHYEFPPYATGEVGRIGPLGRRELGHGAL----AERALMPTLPSDYPF--TV 466
Query: 113 IIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY 172
+ +V++++G + A++ G +AL D + + + V + +
Sbjct: 467 RLTSEVLESNGSSSMASVCGGSLALLDAGVPVSAPAAGVAIGLVTRYENNDTKH-LQDYR 525
Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
+ D+ ED D+D T G +Q + L A D + ++
Sbjct: 526 ILTDILGIEDYLGDMDMKVAGTRKG-FTAIQADLKIPGIPLKVVMESLQKATDAKSKILD 584
Query: 233 LQKDVISN 240
+ + I
Sbjct: 585 IMSEAIRE 592
Score = 88.7 bits (218), Expect = 6e-16, Method: Composition-based stats.
Identities = 30/225 (13%), Positives = 70/225 (31%), Gaps = 18/225 (8%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRST 70
R ++++ ++++A G+ + + GDT ++ TA + K
Sbjct: 48 RNMTISSGKLARFANGTAVCQMGDTAVMVTAVAKAKPTPGQNFMPLVVDYRLKNAASGRI 107
Query: 71 GNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAI 130
+ + R+I R+LR + Q++ + + A AI
Sbjct: 108 P--MNFMRRELGPSEKEILSARLIDRSLRPLFAKEYRNETQLVCNMLSMDAVHSPDVLAI 165
Query: 131 TGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDAN 190
A +A G + A+ G+ G +++ E + +D
Sbjct: 166 NAASMA-------------LSLSDIPWNGPIGAVRVGLCEGEVLINPTRRELQSSQLDLV 212
Query: 191 FVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
T +V ++G + + +I+ +
Sbjct: 213 VSATKQNLVVMLEGKGQVVLL--QDLLKAIKQGTREAQFIIQEIE 255
>gi|269795632|ref|YP_003315087.1| guanosine pentaphosphate synthetase I/polynucleotide phosphorylase
[Sanguibacter keddieii DSM 10542]
gi|269097817|gb|ACZ22253.1| guanosine pentaphosphate synthetase I/polynucleotide phosphorylase
[Sanguibacter keddieii DSM 10542]
Length = 735
Score = 126 bits (317), Expect = 2e-27, Method: Composition-based stats.
Identities = 40/242 (16%), Positives = 80/242 (33%), Gaps = 14/242 (5%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
+R+ GR +R +S V GS + + G+T ++ TL E+ +
Sbjct: 339 VRIDGRGLADIRTLSAEVEVVPRVHGSAIFERGETQIMGITTLNMLRMEQQIDSLGPETR 398
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P STG + + R+ G RAL V+ I
Sbjct: 399 KRYMHNYNFPPYSTGETGRVGSPKRREIGHGAL----AERALVPVLPTREEFPYAIRQVS 454
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+ + ++G T ++ + ++L + + + + G + D
Sbjct: 455 EALSSNGSTSMGSVCASTLSLLNAGVPLRAPVAGIAMGLISD-----TVDGKPRYAALTD 509
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED+ D+D T + +Q + L A+D ++ + +
Sbjct: 510 ILGAEDAFGDMDFKVAGTREF-VTAIQLDTKLDGIPASVLGGALTQARDARFAILDVLGE 568
Query: 237 VI 238
I
Sbjct: 569 AI 570
Score = 56.0 bits (133), Expect = 4e-06, Method: Composition-based stats.
Identities = 36/218 (16%), Positives = 65/218 (29%), Gaps = 37/218 (16%)
Query: 33 GDTHLLTTATLE----EKVPMWIRNTKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQ 88
G+T LL+ T+ ++ + G +P S R GR +
Sbjct: 44 GETMLLSATTVGKHPKDQFDFFPLTVDVEERMYAAGRIPGSFFRR------EGRPSTEAI 97
Query: 89 EIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCS 148
R+I R LR Q+++ D T AI A ++
Sbjct: 98 LTCRLIDRPLRPTFVKGLRNEVQVVVTVLAAHPDDAYDTLAINVASLSTQ---------- 147
Query: 149 NKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSG---HIVEVQGS 205
G V A+ ++ G + Y + D +G I+ V+
Sbjct: 148 ---LSGLPFSGPVGAVRIALVDGQWVAFPKYSDKEKAVFDMVVAGRVAGDDVAIMMVEAE 204
Query: 206 AERATFS-----------QDHFFAMLNLAKDRIADLIK 232
A +++ ++ L +K I L +
Sbjct: 205 ATDNSWTLIKDEGVAAPTEEVVAEGLEASKVFIRQLCE 242
>gi|323692624|ref|ZP_08106856.1| polyribonucleotide nucleotidyltransferase [Clostridium symbiosum
WAL-14673]
gi|323503321|gb|EGB19151.1| polyribonucleotide nucleotidyltransferase [Clostridium symbiosum
WAL-14673]
Length = 707
Score = 126 bits (316), Expect = 2e-27, Method: Composition-based stats.
Identities = 39/241 (16%), Positives = 75/241 (31%), Gaps = 10/241 (4%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL-EEKVPMWIRNTKHGWIT 60
R GR ++R ++ + GS + G T +L TL + +
Sbjct: 312 RPDGRGVTEIRRLAAEIDMLPRVHGSGMFTRGQTQILNICTLAPLSEAQKLDGLDENEKS 371
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
Y V S G R + RAL V+ I + ++
Sbjct: 372 KRYMHHYNFPSYSVGETRPSRGPGRREIGHGALAERALIPVLPREEEFPYAIRTVSETME 431
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
++G T A+I + ++L ++ V + D+
Sbjct: 432 SNGSTSQASICASTLSLMAAGVPIKAPVAGISCGLV-------TGDTDDDYIVLTDIQGL 484
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI-KLQKDVIS 239
ED D+D T G I +Q + ++ + ++ ++ + K VI+
Sbjct: 485 EDFFGDMDFKVGGTHKG-ITAIQMDIKIHGLTRPIIEEAIAKTREARIHILDDVMKPVIA 543
Query: 240 N 240
Sbjct: 544 E 544
Score = 91.1 bits (224), Expect = 1e-16, Method: Composition-based stats.
Identities = 40/234 (17%), Positives = 76/234 (32%), Gaps = 27/234 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----HGWITAEYGML 66
R +++ V+ A G+ + +GDT +L+TAT +K I G +
Sbjct: 12 RTLTVDIGRVAAQANGAAFMHYGDTTVLSTATASDKPRDGIDFFPLSVEFEEKLYAVGKI 71
Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
P R G+ + R+I R +R + + + D
Sbjct: 72 PGGFNKR------EGKASENAVLTCRVIDRPMRPLFPKDYRNDVTLNNLVLSVDPDCSPE 125
Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
A+ GA +A G A G++ G IV+ + D
Sbjct: 126 YTAMLGAAIATC-------------ISDIPFDGPCATTQIGLIDGEFIVNPTNLQKKLSD 172
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
+ T ++ ++ A +D + A D ++IK +++
Sbjct: 173 LALTVASTRE-KVIMIEAGANEVP--EDIVLQAIFKAHDINQEIIKFIDTIVAE 223
>gi|196231533|ref|ZP_03130391.1| Polyribonucleotide nucleotidyltransferase [Chthoniobacter flavus
Ellin428]
gi|196224386|gb|EDY18898.1| Polyribonucleotide nucleotidyltransferase [Chthoniobacter flavus
Ellin428]
Length = 716
Score = 126 bits (316), Expect = 2e-27, Method: Composition-based stats.
Identities = 41/244 (16%), Positives = 84/244 (34%), Gaps = 13/244 (5%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL-----EEKVPMWIRNTKH 56
R GR +Q+R++S + + GS L + G+T + ATL +++ +
Sbjct: 314 RCDGRGLDQIRDLSAEVGLLPRSHGSALFQRGETQAVALATLAPADEAQELDGYTGGETT 373
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P S G + + R+ G R++ V+ I +
Sbjct: 374 KRFILHYNFPPFSVGETGRTGSPGRREIGHGAL----AERSVEPVIPDVTKFPYAIRVSS 429
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V++++G T A++ +AL D ++ V + + + D
Sbjct: 430 EVMESNGSTSMASVCSGVLALLDAGVPLKKSVAGISCGLVTEF---RADGQLDRYTMLTD 486
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T G + Q + + +D ++ +
Sbjct: 487 IIGSEDHFGDMDWKLCGTRDG-VTGFQLDLKLPGIPLKMMEEAIYRTRDARMRVLDVMDS 545
Query: 237 VISN 240
+S
Sbjct: 546 ALSQ 549
Score = 98.8 bits (244), Expect = 6e-19, Method: Composition-based stats.
Identities = 47/235 (20%), Positives = 92/235 (39%), Gaps = 28/235 (11%)
Query: 13 EISLTRR-VSKYAEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTKHGWITAEYGMLP 67
I++ ++K A+G+ V+ G+T + +A T++E + + A G P
Sbjct: 14 PITIETGKLAKLADGAVTVRSGETIVFISAVSATTVKEGQDFFPLTVDYREKAAAVGKFP 73
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R GR + RM R LR + L QII +
Sbjct: 74 GGYFKR------EGRPSEKEILTCRMTDRPLRPLFPKGYLYDTQIIGVLLSADGEVDPDI 127
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
I GA AL G V A+ G + G I + + + + D+
Sbjct: 128 LFINGASAALM-------------VSDIPFAGPVGAVRVGRVNGQFIANPTHSQMADSDL 174
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNEV 242
D +V + ++ ++G+ + ++ F A L+ A+ ++ ++ LQ++ ++ +V
Sbjct: 175 DLVYVGNATD-VIMIEGAGDEVP--EEQFIAALHFAQTEVSKIVALQQE-LAQKV 225
>gi|225570607|ref|ZP_03779632.1| hypothetical protein CLOHYLEM_06709 [Clostridium hylemonae DSM
15053]
gi|225160620|gb|EEG73239.1| hypothetical protein CLOHYLEM_06709 [Clostridium hylemonae DSM
15053]
Length = 695
Score = 126 bits (316), Expect = 3e-27, Method: Composition-based stats.
Identities = 38/242 (15%), Positives = 72/242 (29%), Gaps = 12/242 (4%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT--LEEKVPMWIRNTKHGWI 59
R GR +Q+R ++ + GS + G T + T T +
Sbjct: 312 RPDGRAVDQIRALAAEIDLIPRVHGSAMFTRGQTQ-ICTVTTLAPLAEAQRLDGLDEAET 370
Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119
+ Y V S G R + RAL V+ I +
Sbjct: 371 SKRYMHHYNFPSYSVGETRPSRGPGRREIGHGALAERALIPVLPSETEFPYAIRTVSETF 430
Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179
+++G T A+I + ++L ++ V + D+
Sbjct: 431 ESNGSTSQASICASSMSLMAAGVPIKAAVAGISAGLV-------TGDTDDDYLVLTDIQG 483
Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI-KLQKDVI 238
ED D+D T G I +Q + ++ + K ++ ++ I
Sbjct: 484 LEDFFGDMDFKVAGTHKG-ITAIQMDIKIHGLTRPIIEEAIATTKKARTFILDEVMNKTI 542
Query: 239 SN 240
+
Sbjct: 543 AE 544
Score = 93.8 bits (231), Expect = 2e-17, Method: Composition-based stats.
Identities = 38/234 (16%), Positives = 76/234 (32%), Gaps = 27/234 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----HGWITAEYGML 66
R++ + V+K A G+ L+ +GDT +L TAT EK I + G +
Sbjct: 12 RKLRVDVDRVAKQANGAVLMHYGDTTVLCTATASEKPREGIDFFPLSVEYNERLYSVGKI 71
Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
P R G+ + R+I R +R + + + D
Sbjct: 72 PGGFNKR------EGKASENAVLTCRVIDRPMRPLFPKDYRNDVTLENLVMSVDQDCSPE 125
Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
A+ GA +A G ++A G++ + + + D
Sbjct: 126 LTAMLGAAIAT-------------TISDIPFDGPISATQVGLVDNTLVFNPTAAQKEASD 172
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
+ T ++ ++ A +D + A + +I +++
Sbjct: 173 MALTVASTRD-KVIMIEAGANEVP--EDKMIEAIFAAHELNQKVIAFIDTIVAE 223
>gi|323483661|ref|ZP_08089044.1| hypothetical protein HMPREF9474_00793 [Clostridium symbiosum
WAL-14163]
gi|323402997|gb|EGA95312.1| hypothetical protein HMPREF9474_00793 [Clostridium symbiosum
WAL-14163]
Length = 707
Score = 126 bits (316), Expect = 3e-27, Method: Composition-based stats.
Identities = 39/241 (16%), Positives = 75/241 (31%), Gaps = 10/241 (4%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL-EEKVPMWIRNTKHGWIT 60
R GR ++R ++ + GS + G T +L TL + +
Sbjct: 312 RPDGRGVTEIRRLAAEIDMLPRVHGSGMFTRGQTQILNICTLAPLSEAQKLDGLDENEKS 371
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
Y V S G R + RAL V+ I + ++
Sbjct: 372 KRYMHHYNFPSYSVGETRPSRGPGRREIGHGALAERALIPVLPSEEEFPYAIRTVSETME 431
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
++G T A+I + ++L ++ V + D+
Sbjct: 432 SNGSTSQASICASTLSLMAAGVPIKAPVAGISCGLV-------TGDTDDDYIVLTDIQGL 484
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI-KLQKDVIS 239
ED D+D T G I +Q + ++ + ++ ++ + K VI+
Sbjct: 485 EDFFGDMDFKVGGTHKG-ITAIQMDIKIHGLTRPIIEEAIAKTREARIHILDDVMKPVIA 543
Query: 240 N 240
Sbjct: 544 E 544
Score = 91.1 bits (224), Expect = 1e-16, Method: Composition-based stats.
Identities = 40/234 (17%), Positives = 76/234 (32%), Gaps = 27/234 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----HGWITAEYGML 66
R +++ V+ A G+ + +GDT +L+TAT +K I G +
Sbjct: 12 RTLTVDIGRVAAQANGAAFMHYGDTTVLSTATASDKPRDGIDFFPLSVEFEEKLYAVGKI 71
Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
P R G+ + R+I R +R + + + D
Sbjct: 72 PGGFNKR------EGKASENAVLTCRVIDRPMRPLFPKDYRNDVTLNNLVLSVDPDCSPE 125
Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
A+ GA +A G A G++ G IV+ + D
Sbjct: 126 YTAMLGAAIATC-------------ISDIPFDGPCATTQIGLIDGEFIVNPTNLQKKLSD 172
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
+ T ++ ++ A +D + A D ++IK +++
Sbjct: 173 LALTVASTRE-KVIMIEAGANEVP--EDIVLQAIFKAHDINQEIIKFIDTIVAE 223
>gi|291295492|ref|YP_003506890.1| ribonuclease PH [Meiothermus ruber DSM 1279]
gi|290470451|gb|ADD27870.1| ribonuclease PH [Meiothermus ruber DSM 1279]
Length = 238
Score = 126 bits (316), Expect = 3e-27, Method: Composition-based stats.
Identities = 84/241 (34%), Positives = 122/241 (50%), Gaps = 5/241 (2%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R GR ++R ++L YAEGS LV+ G T +L +L + VP + GW+ A
Sbjct: 3 RKDGRAAQELRPLTLRMGYVHYAEGSALVELGHTKVLVNVSLTDGVPRHVSGR-EGWLMA 61
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
EY +LPRST R E + GR+ EIQR +GRA R+ +DLS L ++ ++ID DVIQA
Sbjct: 62 EYNLLPRSTKERK--ERERQKISGRTAEIQRFLGRAFRAALDLSLLPNKTVVIDADVIQA 119
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
DGGTR A++ G + ALH + + + L A M ++DL E
Sbjct: 120 DGGTRVASLLGGYAALHMAMDRLV--NQGKLDEWPLTEFAAVSVGWMSDDSLLLDLTQIE 177
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
D D V T SG I+E+ G+ E + + AML + I +L++ + N
Sbjct: 178 DENAWADLTVVATQSGDIIELHGAGEGRPVPRSTYQAMLEMGLAHIPELVRRVHAQLKNR 237
Query: 242 V 242
V
Sbjct: 238 V 238
>gi|295110267|emb|CBL24220.1| polyribonucleotide nucleotidyltransferase [Ruminococcus obeum
A2-162]
Length = 697
Score = 126 bits (316), Expect = 3e-27, Method: Composition-based stats.
Identities = 40/244 (16%), Positives = 76/244 (31%), Gaps = 18/244 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL-----EEKVPMWIRNTKH 56
R GRQ Q+R ++ + GS + G T + T TL +++
Sbjct: 312 RPDGRQITQIRPLAAEVDIIPRVHGSAMFTRGQTQICTMTTLAPLSEAQRIDGLDEFETS 371
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y S G R+ G RAL V+ + I
Sbjct: 372 KRYMHHYNFPSYSVGETKPSRGPGRREIGHGAL----AERALVPVLPSAEEFPYAIRTVS 427
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+ +++G T A+I + ++L + V + D
Sbjct: 428 ETFESNGSTSQASICASTMSLMAAGVPIRKPVAGISCGLV-------TGATDDDYIVLTD 480
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI-KLQK 235
+ ED D+D T G I +Q + ++ + K+ ++ ++ +
Sbjct: 481 IQGLEDFFGDMDFKVAGTHDG-ITAIQMDIKIHGLTRQIVEEAIRRTKEAREYILTEVME 539
Query: 236 DVIS 239
I+
Sbjct: 540 KCIA 543
Score = 99.5 bits (246), Expect = 3e-19, Method: Composition-based stats.
Identities = 37/234 (15%), Positives = 80/234 (34%), Gaps = 27/234 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----HGWITAEYGML 66
R +++ V+K A G+ L+ +GDT +L+TAT ++ I + G +
Sbjct: 12 RTLTVDIGRVAKQANGAALMHYGDTTVLSTATASKEPREGIDFFPLSVEYEEKMYAVGKI 71
Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
P R G+ + R+I R +R + ++ + +
Sbjct: 72 PGGFNKR------EGKASEHAILTSRVIDRPMRPLFPKDYRNDVTLVNMVMSVDPECNPE 125
Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
A+ G+ +A G A G++ G I++ + D
Sbjct: 126 IPAMLGSSIATC-------------ISDIPFDGPCATTQVGLIDGEFIINPSLAQKELSD 172
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
+ T ++ ++ A +D + A D ++I+ +++
Sbjct: 173 LQLTVASTRE-KVIMIEAGANEVP--EDTMIEAIYKAHDVNQEIIRFIDKIVAE 223
>gi|166030867|ref|ZP_02233696.1| hypothetical protein DORFOR_00547 [Dorea formicigenerans ATCC
27755]
gi|166029134|gb|EDR47891.1| hypothetical protein DORFOR_00547 [Dorea formicigenerans ATCC
27755]
Length = 707
Score = 126 bits (315), Expect = 3e-27, Method: Composition-based stats.
Identities = 39/242 (16%), Positives = 74/242 (30%), Gaps = 12/242 (4%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHL--LTTATLEEKVPMWIRNTKHGWI 59
R GRQ +Q+R ++ + GS + G T + + T +
Sbjct: 324 RPDGRQIDQIRPLAAEVDLIPRVHGSAMFTRGQTQICDICTL-APLSEAQRLDGLDEAET 382
Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119
T Y V S G R + RAL V+ A I +
Sbjct: 383 TKRYMHHYNFPSYSVGETRPSRGPGRREIGHGALAERALVPVLPSEADFPYAIRTVSETF 442
Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179
+++G T A++ + +AL ++ V + D+
Sbjct: 443 ESNGSTSQASVCASSMALMAAGVPIKSAVAGISCGLV-------TGDTDDDYLVLTDIQG 495
Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI-KLQKDVI 238
ED D+D T G I +Q + ++ + + ++ ++ I
Sbjct: 496 LEDFFGDMDFKVAGTHEG-ITAIQMDIKIHGLTRAIIEEAIAKTRKARLYIMDEVMSKAI 554
Query: 239 SN 240
+
Sbjct: 555 NE 556
Score = 94.5 bits (233), Expect = 1e-17, Method: Composition-based stats.
Identities = 38/234 (16%), Positives = 78/234 (33%), Gaps = 27/234 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----HGWITAEYGML 66
R + + V+K A G+ L+ +GDT +L TAT EK I + G +
Sbjct: 24 RTLRVDVDRVAKQANGAVLMHYGDTTVLCTATASEKPREGIDFFPLSVEYNERMYAVGKI 83
Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
P R G+ + R+I R +R + + + D
Sbjct: 84 PGGFNKR------EGKASENAVLTDRVIDRPMRPLFPKDYRNDVTLENLVLSVDQDCSPE 137
Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
A+ GA +A G ++ G++ G +++ + + D
Sbjct: 138 LTAMLGAAIAT-------------TISDIPFDGPISTTQVGLVDGEFVINPTAEQKAVSD 184
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
+ T ++ ++ A + + A + ++IK +++
Sbjct: 185 LALTVASTRE-KVIMIEAGANEVP--EQQMIDAIFKAHEVNQEVIKFIDTIVAE 235
>gi|145343510|ref|XP_001416364.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144576589|gb|ABO94657.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 679
Score = 126 bits (315), Expect = 3e-27, Method: Composition-based stats.
Identities = 43/240 (17%), Positives = 85/240 (35%), Gaps = 4/240 (1%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+R+ GR ++R + GS L + G+T L T TL + G +
Sbjct: 266 VRVDGRGVYELRNLDGVTGTMPIVHGSALFERGNTQALATVTLGSLEDSQRLDNLTGPTS 325
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
ML S + E + R + ++L V + ++ + ++
Sbjct: 326 KRL-MLHYSFPSFSVNETGARGLSRREVGHGALAEKSLLGVFPDEDAFPFAVRVNTETLE 384
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
++G + AA+ +AL D + + + V+ + + + D+
Sbjct: 385 SNGSSSMAAVCSGSMALMDAGVPLTEHVGAISIGLVMDEDE--ETGEVKRYALMDDIMGL 442
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
ED D+D T SG + +Q + A D L+ A +I + + +S
Sbjct: 443 EDVLGDMDFKIAGTRSG-VTGIQLDCKPAGIPLDILIEALDRASAARQKVIDVMERAVSE 501
Score = 47.9 bits (112), Expect = 0.001, Method: Composition-based stats.
Identities = 28/189 (14%), Positives = 57/189 (30%), Gaps = 22/189 (11%)
Query: 55 KHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIII 114
+ + G +P + R G R R+I RA R + + + +
Sbjct: 3 DYRERSYAKGKIPSTFTRR------EGAPKEREILAMRVIDRATRPLFEKNFAKEVMLQC 56
Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPI 174
A+ GA A S G + A+ ++ I
Sbjct: 57 VVMASDGVEDPAVLAVNGASAA-------------LTASSIPWNGPIGAVRVAVVNKAII 103
Query: 175 VDLDYGEDSTIDVDANFVMTDSGHIVEVQG-SAERATFSQDHFFAMLNLAKDRIADLIKL 233
V + D + ++ + ++ S + + L A + + +LI
Sbjct: 104 VSPSDEVVESSDFTLFYAGNEARAL-MIEAQSNKSGGLEETLVADALRKAHEAVRELIPP 162
Query: 234 QKDVISNEV 242
Q ++NE+
Sbjct: 163 Q-IALANEI 170
>gi|13541138|ref|NP_110826.1| exosome complex exonuclease Rrp41 [Thermoplasma volcanium GSS1]
gi|29336899|sp|Q97BZ5|ECX1_THEVO RecName: Full=Probable exosome complex exonuclease 1
gi|14324525|dbj|BAB59452.1| ribonuclease PH [Thermoplasma volcanium GSS1]
Length = 248
Score = 126 bits (315), Expect = 3e-27, Method: Composition-based stats.
Identities = 60/243 (24%), Positives = 110/243 (45%), Gaps = 23/243 (9%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKV-PMWIRNTKHGWI 59
+RL GR N++R I + V A+GS +++G ++ ++ P ++ H +
Sbjct: 17 LRLDGRSFNELRPIKIEAGVLNRADGSAYIEWGGNKIIVGVYGPKEAYPKHSQDIDHAVV 76
Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119
A Y M S R + R+ EI ++I AL S + + +I + +V+
Sbjct: 77 KARYNMAAFSVDERKRPG-----PDRRTMEISKVISEALSSSIMIEQFPRAEIDVYIEVL 131
Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179
QAD GTR A +T A VAL D M D V + G + G+ ++DL
Sbjct: 132 QADAGTRIAGLTAATVALADAGIPMRD-------------MVVGCTAGKVDGHIVLDLSK 178
Query: 180 GEDSTIDVDANF-VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
ED+ + D +M +G IV +Q + ++D F+ ++ + + ++Q++ +
Sbjct: 179 EEDNFGEADIPMAIMPKTGEIVLLQMDGD---VTEDEFYEATSMIIEATKKISQIQRNAL 235
Query: 239 SNE 241
N+
Sbjct: 236 LNK 238
>gi|160880894|ref|YP_001559862.1| polynucleotide phosphorylase/polyadenylase [Clostridium
phytofermentans ISDg]
gi|187610260|sp|A9KNK6|PNP_CLOPH RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|160429560|gb|ABX43123.1| Polyribonucleotide nucleotidyltransferase [Clostridium
phytofermentans ISDg]
Length = 698
Score = 126 bits (315), Expect = 3e-27, Method: Composition-based stats.
Identities = 41/241 (17%), Positives = 78/241 (32%), Gaps = 10/241 (4%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL-EEKVPMWIRNTKHGWIT 60
R GR+ +Q+R ++ + GS + G T +LT TL + +
Sbjct: 313 RPDGREIHQIRRLAAEVDMLPRVHGSGMFTRGQTQILTVTTLAPLSEAQKLDGLDEAEKS 372
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
Y V S G R + RAL V+ A I + ++
Sbjct: 373 KRYMHHYNFPSYSVGETKPSRGPGRREIGHGALAERALIPVLPSEAEFPYAIRTVSETME 432
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
++G T A++ + ++L ++ V + D+
Sbjct: 433 SNGSTSQASVCASTLSLMAAGVPIKKQVAGISCGLV-------TGDTDDDYLVLTDIQGL 485
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI-KLQKDVIS 239
ED D+D T G I +Q + ++ + K+ +I ++ I+
Sbjct: 486 EDFFGDMDFKVAGTHDG-ITAIQMDIKIHGLTRAIIEEAIRRTKEAREYIINEVMTPAIA 544
Query: 240 N 240
Sbjct: 545 E 545
Score = 91.8 bits (226), Expect = 6e-17, Method: Composition-based stats.
Identities = 35/234 (14%), Positives = 78/234 (33%), Gaps = 27/234 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----HGWITAEYGML 66
R +S+ V+ A G+ + +GDT +L+TAT +K I + G +
Sbjct: 12 RTLSVDVGRVAAQANGAAFMHYGDTVVLSTATASDKPREGIDFFPLSVEYEEKLYAVGKV 71
Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
P R G+ + R+I R +R + + + D
Sbjct: 72 PGGFNKR------EGKASENAILTSRVIDRPMRPLFPKDYRNDVTLNNLVMSVDPDCSPE 125
Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
A+ G+ +++ G A G++ G + + + + D
Sbjct: 126 LTAMLGSAISV-------------AISDIPFDGPCATTQVGLVDGELVFNPTAAQKAVSD 172
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
+ T ++ ++ A +D + A + ++I+ +++
Sbjct: 173 LALTVASTRD-KVIMIEAGANEVP--EDKMLEAIFAAHEVNQEVIQFIDKIVAE 223
>gi|291550238|emb|CBL26500.1| polyribonucleotide nucleotidyltransferase [Ruminococcus torques
L2-14]
Length = 695
Score = 126 bits (315), Expect = 4e-27, Method: Composition-based stats.
Identities = 38/242 (15%), Positives = 73/242 (30%), Gaps = 12/242 (4%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT--LEEKVPMWIRNTKHGWI 59
R GR +Q+R ++ + GS + G T + T T +
Sbjct: 312 RPDGRAIDQIRPLAAEVDLIPRVHGSAMFTRGQTQ-ICTMTTLAPLSEAQKLDGLDEAEK 370
Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119
T Y V S G R + RAL V+ + I +
Sbjct: 371 TKRYMHHYNFPSYSVGETRPSRGPGRREIGHGALAERALLPVLPSESEFPYAIRTVSETF 430
Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179
+++G T A++ + ++L ++ V + D+
Sbjct: 431 ESNGSTSQASVCASSMSLMAAGVPIKSAVAGISAGLV-------TGETDDDYLVLTDIQG 483
Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI-KLQKDVI 238
ED D+D T G I +Q + ++ + K ++ ++ I
Sbjct: 484 LEDFFGDMDFKVAGTHKG-ITAIQMDIKIHGLTRPIIEEAIAATKKARTYIMDEVMSKAI 542
Query: 239 SN 240
+
Sbjct: 543 AE 544
Score = 87.6 bits (215), Expect = 1e-15, Method: Composition-based stats.
Identities = 37/234 (15%), Positives = 75/234 (32%), Gaps = 27/234 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----HGWITAEYGML 66
R + + V+K A G+ L+ +GDT +L TAT +K I + G +
Sbjct: 12 RTLRVDVDRVAKQANGAVLMHYGDTTVLCTATASDKPREGIDFFPLSVEYNERMYAVGKI 71
Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
P R G+ + R+I R +R + + + D
Sbjct: 72 PGGFNKR------EGKASENAILTDRVIDRPMRPLFPKDYRNDVTLENLVLSVDQDCSPE 125
Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
A+ GA +A G ++ G++ G + + + D
Sbjct: 126 LTAMLGAALAT-------------SISDIPFDGPISTTQVGLVDGEFVFNPTAAQKEVSD 172
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
+ T ++ ++ A+ + + A D +I +++
Sbjct: 173 LALTVASTKE-KVIMIEAGAKEVP--EAKMIEAIFAAHDLNQKVIAFFDTIVAE 223
>gi|73669985|ref|YP_306000.1| exosome complex RNA-binding protein Rrp42 [Methanosarcina barkeri
str. Fusaro]
gi|72397147|gb|AAZ71420.1| ribosomal RNA-processing protein RRP42 [Methanosarcina barkeri str.
Fusaro]
Length = 260
Score = 126 bits (315), Expect = 4e-27, Method: Composition-based stats.
Identities = 48/245 (19%), Positives = 88/245 (35%), Gaps = 15/245 (6%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R GR R+I L V AEGS V GDT +L L+ P + + G I
Sbjct: 22 RQDGRGFKDFRDIKLETNVIPKAEGSAKVTLGDTQVLVGVKLQPGTP-FPDSQDEGVIIT 80
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGR------ALRSVVDLSALGSRQI--I 113
+ P ++ + E+ R++ R A+ ++G
Sbjct: 81 NLELNPIASPEFEPGP-----PREEAIEMARVVDRGIRESGAIDIKKLCISVGESVWIAY 135
Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP 173
ID V+ DG A+ A AL + E + +K ++ +
Sbjct: 136 IDVHVLNDDGNIIDASSLAAIAALMTTIVPNEQHGIGADVPLAMKEMPVGVTLAKIGSKL 195
Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
+VD E + + V + G + +Q F++ +++A ++ A++ KL
Sbjct: 196 MVDPSLDEGAVCETKLTVVSSSDGSVAGMQKMGT-VPFTEAEVLEAIDMACEKAAEIRKL 254
Query: 234 QKDVI 238
+ +
Sbjct: 255 YLEAL 259
>gi|153812986|ref|ZP_01965654.1| hypothetical protein RUMOBE_03393 [Ruminococcus obeum ATCC 29174]
gi|149830933|gb|EDM86023.1| hypothetical protein RUMOBE_03393 [Ruminococcus obeum ATCC 29174]
Length = 691
Score = 126 bits (315), Expect = 4e-27, Method: Composition-based stats.
Identities = 40/244 (16%), Positives = 76/244 (31%), Gaps = 18/244 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL-----EEKVPMWIRNTKH 56
R GRQ Q+R ++ + GS + G T + T TL +++
Sbjct: 306 RPDGRQITQIRPLAAEVDIIPRVHGSAMFTRGQTQICTMTTLAPLSEAQRIDGLDEFETS 365
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y S G R+ G RAL V+ + I
Sbjct: 366 KRYMHHYNFPSYSVGETKPSRGPGRREIGHGAL----AERALVPVLPSAEEFPYAIRTVS 421
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+ +++G T A+I + ++L + V + D
Sbjct: 422 ETFESNGSTSQASICASTMSLMAAGVPIRKPVAGISCGLV-------TGATDDDYIVLTD 474
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI-KLQK 235
+ ED D+D T G I +Q + ++ + K+ ++ ++ +
Sbjct: 475 IQGLEDFFGDMDFKVAGTHDG-ITAIQMDIKIHGLTRQIVEEAIRRTKEAREYILTEVME 533
Query: 236 DVIS 239
I+
Sbjct: 534 KCIA 537
Score = 99.1 bits (245), Expect = 4e-19, Method: Composition-based stats.
Identities = 36/234 (15%), Positives = 80/234 (34%), Gaps = 27/234 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----HGWITAEYGML 66
R +++ V+K A G+ L+ +GDT +L+TAT ++ I + G +
Sbjct: 6 RTLTVDIGRVAKQANGAALMHYGDTTVLSTATASKEPREGIDFFPLSVEYEEKMYAVGKI 65
Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
P R G+ + R+I R +R + ++ + +
Sbjct: 66 PGGFNKR------EGKASEHAILTSRVIDRPMRPLFPKDYRNDVTLVNMVMSVDPECNPE 119
Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
A+ G+ +A G A G++ G +++ + D
Sbjct: 120 IPAMLGSSIATC-------------ISDIPFDGPCATTQVGLIDGEFVINPSLAQKELSD 166
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
+ T ++ ++ A +D + A D ++I+ +++
Sbjct: 167 LQLTVASTRE-KVIMIEAGANEVP--EDTMIEAIYKAHDVNQEIIRFIDKIVAE 217
>gi|298708135|emb|CBJ30476.1| Polyribonucleotide nucleotidyltransferase [Ectocarpus siliculosus]
Length = 763
Score = 125 bits (314), Expect = 4e-27, Method: Composition-based stats.
Identities = 47/250 (18%), Positives = 81/250 (32%), Gaps = 17/250 (6%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE---EKVPMWIRNTKHG- 57
R GR +++ R+++ V GS + G T L TL E P
Sbjct: 340 RPDGRGKDEARDLTGEVDVLPTVHGSGMFTRGQTQTLAIVTLGPALESAPQRFLGKAQEA 399
Query: 58 ------WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQ 111
+ Y P + V+ R G RA+ SV+ +
Sbjct: 400 SDTLDARLYLHYEFPPYCVNETGRVGLVNRRMVGHGNL----AERAVLSVMPETETFPYT 455
Query: 112 IIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG 171
+ +V ++G + A +AL D + + + A +
Sbjct: 456 TRVSAEVTMSNGSSSMATACATSLALMDAGVPVSSPVGGISVGL-MTTDAPADGEDIGPH 514
Query: 172 YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAE-RATFSQDHFFAMLNLAKDRIADL 230
++D+ ED D+D T +G I +Q + R L +AK A +
Sbjct: 515 SILMDIQGTEDHYGDMDFKVAGTATG-ITAIQLDVKLRGGVPLPVLSEALRVAKAGRAQV 573
Query: 231 IKLQKDVISN 240
+K K I +
Sbjct: 574 LKAMKKAIGS 583
Score = 76.4 bits (186), Expect = 3e-12, Method: Composition-based stats.
Identities = 34/228 (14%), Positives = 68/228 (29%), Gaps = 21/228 (9%)
Query: 14 ISLTRRVSKY-AEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHGWITAEYGMLPR 68
I+ A+G + G T ++ +A + + G +PR
Sbjct: 19 ITFETGKIAQLADGFVTARQGGTVVMVSAVSNRAEMDDSGFLPLSVDYREKAHALGKIPR 78
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
+ R R+ + R + R LR + Q++ ++A G
Sbjct: 79 TPNRRDG------RETDEEVLVARAVDRVLRPLFPPGYCFDTQVVATVQALEAGGDPVVV 132
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
AI A AL + + ++ +V V S D +
Sbjct: 133 AINAASAALCVSNIPWDGPAGCVRIGRVDGKLVVNPSPDTFSPTAWNDGGGFDL------ 186
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ++ ++ + + L LA +A LI+ Q+
Sbjct: 187 --LYAANEHRVLMIEMGG--GPTGERLMDSALKLAHKHVAPLIEAQRA 230
>gi|257460281|ref|ZP_05625384.1| polyribonucleotide nucleotidyltransferase [Campylobacter gracilis
RM3268]
gi|257442346|gb|EEV17486.1| polyribonucleotide nucleotidyltransferase [Campylobacter gracilis
RM3268]
Length = 704
Score = 125 bits (314), Expect = 4e-27, Method: Composition-based stats.
Identities = 43/242 (17%), Positives = 82/242 (33%), Gaps = 22/242 (9%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRN------TK 55
R GR +++R IS+ + A GSCL G T L TL + +
Sbjct: 323 RADGRALDEVRPISIETNILPCAHGSCLFTRGQTQALVVTTLGGDSDAQLSDSLTQLEPI 382
Query: 56 HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115
Y G ++ R+ G RAL ++ + I +
Sbjct: 383 SERFMFNYNFPGFCVGEASPLKSPGRRELGHGNL----AKRALYPSIN--LNSPQSIRVV 436
Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIV 175
++++++G + A++ G ++L + + +G A+ ++
Sbjct: 437 SEILESNGSSSMASVCGGALSLRAAGVPTLKLVAGVAMGLIFEGEKHAVLTDIM------ 490
Query: 176 DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
ED D+D T G I +Q + S + L A+ A ++ L +
Sbjct: 491 ---GLEDHDGDMDFKVAGTYEG-ITALQMDIKLGGISLEVLKEALAQARQARAHILGLME 546
Query: 236 DV 237
Sbjct: 547 QA 548
Score = 81.0 bits (198), Expect = 1e-13, Method: Composition-based stats.
Identities = 36/230 (15%), Positives = 73/230 (31%), Gaps = 32/230 (13%)
Query: 20 VSKYAEGSCLVKFGDTHLLTTATLEE---KVPMWIRNTKHGWITAEYGMLPRSTGNRVKR 76
V+K A G+ L++ +T +L T EE + ++ G +P R
Sbjct: 19 VAKQAAGAALLRVKNTVVLATVAREETQVQEDFLPLTVQYIEKMYAAGRIPGGYIKR--- 75
Query: 77 EAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVA 136
+ G R+I R+LR + QI++ + + A+ A A
Sbjct: 76 ---ETKPGDFETLTSRIIDRSLRPLFPKGYAYPTQIVVYVLSADPEVDLQVVALNAASAA 132
Query: 137 LHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDS 196
L+ +K V + G G I++ +D
Sbjct: 133 LY-------------LSDIPIKAPVCGVRIGYENGNFILNPSNSTLKASVLDLYVAGVGD 179
Query: 197 GHIVEVQGSA---------ERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
++ ++ + + FS+D ++ A I+ ++
Sbjct: 180 -ELLMIEMRSLPQINGDAQQMNEFSEDLMVDAIDFAAKAISAGSNAYEEA 228
>gi|154485033|ref|ZP_02027481.1| hypothetical protein EUBVEN_02751 [Eubacterium ventriosum ATCC
27560]
gi|149733986|gb|EDM50105.1| hypothetical protein EUBVEN_02751 [Eubacterium ventriosum ATCC
27560]
Length = 688
Score = 125 bits (314), Expect = 4e-27, Method: Composition-based stats.
Identities = 40/245 (16%), Positives = 75/245 (30%), Gaps = 18/245 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL-----EEKVPMWIRNTKH 56
R GR +Q+R ++ + GS + G T + TL +K+ N K
Sbjct: 306 RPDGRALDQIRPLAAEVDIVPRVHGSAMFTRGQTQICNVCTLAPLSEAQKIDGLDENVKT 365
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y S G R+ G +AL V+ I
Sbjct: 366 KRYMHHYNFPSYSVGETKPSRGPGRREIGHGAL----AEKALMPVLPSEEEFPYAIRTVS 421
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+ +++G T A+ + ++L ++ V + D
Sbjct: 422 ETFESNGSTSMASTCSSCMSLMAAGVPIKSMVAGISCGLV-------TGETDDDYVLLTD 474
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL-QK 235
+ ED D+D T G I +Q + ++D + ++ ++ K
Sbjct: 475 IQGLEDFFGDMDFKVTGTTEG-ITAIQMDIKIHGLTRDIVEGAIARTREARLFIMDTCMK 533
Query: 236 DVISN 240
I+
Sbjct: 534 PAIAE 538
Score = 92.6 bits (228), Expect = 5e-17, Method: Composition-based stats.
Identities = 37/234 (15%), Positives = 78/234 (33%), Gaps = 27/234 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKHGWITAEYGML 66
R +++ V+K A G+ + +GDT +L+TAT E V + + + G +
Sbjct: 6 RTLTVDVGRVAKQANGAAFMHYGDTTVLSTATASDKPREGVDFFPLSVEFEEKMYSVGKI 65
Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
P R G+ S R+I R +R + + + +
Sbjct: 66 PGGFNKR------EGKASENSVLTARVIDRPMRPLFPKDYRNDVSLNNLVMSVDPECRPE 119
Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
A+ G+ ++ G A GM+ G +V+ D
Sbjct: 120 LVAMLGSAISTC-------------ISDIPFDGPCAMTQVGMVDGEFVVNPSQAVWDNGD 166
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
+ T ++ ++ A + + +A D +I+ + +++
Sbjct: 167 LQLTVASTKQ-KVIMIEAGANI--IPEAKMIEAIYMAHDINQTIIEFIEKIVAE 217
>gi|254434220|ref|ZP_05047728.1| ribonuclease PH [Nitrosococcus oceani AFC27]
gi|207090553|gb|EDZ67824.1| ribonuclease PH [Nitrosococcus oceani AFC27]
Length = 210
Score = 125 bits (314), Expect = 4e-27, Method: Composition-based stats.
Identities = 107/210 (50%), Positives = 148/210 (70%), Gaps = 2/210 (0%)
Query: 31 KFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEI 90
+FG+T ++ A++E+++P +++ T GWITAEYGMLPRST NR+ REA GRQGGR+ EI
Sbjct: 2 EFGNTRVICNASVEDRIPRFLKGTGRGWITAEYGMLPRSTHNRMGREAAQGRQGGRTLEI 61
Query: 91 QRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNK 150
QR IGRALR+VVDL+ALG + +DCDVIQADGGTRTAAITG++VAL D + + +
Sbjct: 62 QRFIGRALRAVVDLAALGEVTVTLDCDVIQADGGTRTAAITGSYVALVDAINNRLKK--R 119
Query: 151 FQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERAT 210
+ G +A+IS G+ G P++DLDY EDST + D N VM ++G +E+QG+AE
Sbjct: 120 IITHSPIHGQLASISVGIYEGTPVLDLDYREDSTAETDMNVVMNEAGAFIEIQGTAEGHA 179
Query: 211 FSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
F + AML+LAK I L+ Q +V++
Sbjct: 180 FRMNELQAMLDLAKSGINTLLAQQTEVLAK 209
>gi|15233167|ref|NP_191721.1| RRP41; 3'-5'-exoribonuclease/ RNA binding [Arabidopsis thaliana]
gi|186511299|ref|NP_001118878.1| RRP41; 3'-5'-exoribonuclease/ RNA binding [Arabidopsis thaliana]
gi|6164938|gb|AAF04590.1|AF191741_1 exonuclease RRP41 [Arabidopsis thaliana]
gi|6850853|emb|CAB71092.1| exonuclease RRP41 [Arabidopsis thaliana]
gi|26452705|dbj|BAC43435.1| putative exonuclease RRP41 [Arabidopsis thaliana]
gi|28973161|gb|AAO63905.1| putative exonuclease RRP41 [Arabidopsis thaliana]
gi|332646711|gb|AEE80232.1| exosome complex component RRP41 [Arabidopsis thaliana]
gi|332646712|gb|AEE80233.1| exosome complex component RRP41 [Arabidopsis thaliana]
Length = 241
Score = 125 bits (314), Expect = 4e-27, Method: Composition-based stats.
Identities = 62/243 (25%), Positives = 107/243 (44%), Gaps = 24/243 (9%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKV--PMWIRNTKHGW 58
+RL GR+ N+MR+I V A+GS + + G+T ++ ++ + H
Sbjct: 9 LRLDGRRFNEMRQIVAEVGVVSKADGSAVFEMGNTKVIAAVYGPREIQNKSQQKKNDHAV 68
Query: 59 ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDV 118
+ EY M STG+R + + RS E+ +I + + + + + QI I V
Sbjct: 69 VLCEYSMAQFSTGDRRR-----QKFDRRSTELSLVIRQTMEACILTELMPHSQIDIFLQV 123
Query: 119 IQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLD 178
+QADGGTR+A I A +AL D M D + + S G L P++DL+
Sbjct: 124 LQADGGTRSACINAATLALADAGIPMRDLA-------------VSCSAGYLNSTPLLDLN 170
Query: 179 YGEDSTIDVDANF-VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
Y EDS D ++ + +Q A+ + F + LA + + + ++V
Sbjct: 171 YVEDSAGGADVTVGILPKLDKVSLLQMDAK---LPMETFETVFALASEGCKAIAERIREV 227
Query: 238 ISN 240
+
Sbjct: 228 LQE 230
>gi|262340893|ref|YP_003283748.1| polyribonucleotide nucleotidyltransferase [Blattabacterium sp.
(Blattella germanica) str. Bge]
gi|262272230|gb|ACY40138.1| polyribonucleotide nucleotidyltransferase [Blattabacterium sp.
(Blattella germanica) str. Bge]
Length = 713
Score = 125 bits (314), Expect = 4e-27, Method: Composition-based stats.
Identities = 51/245 (20%), Positives = 89/245 (36%), Gaps = 22/245 (8%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT----KH 56
+RL GR Q+R I GS L G+T LTT TL + +
Sbjct: 324 IRLDGRTSKQIRPIWSVVDYLPGVHGSALFSRGETQSLTTVTLGSSLDANKIDNVVMENQ 383
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P STG VS R+ G RAL++++ I +
Sbjct: 384 EKFYLHYNFPPFSTGEIRPIRGVSRREIGHGNL----AQRALKNIIP---NNPYTIRVVS 436
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
D+++++G + A + A +AL D +++ + + ++ I D
Sbjct: 437 DILESNGSSSMATVCAASLALMDAGISIKNPVSGIAMGLFMENEK---------KIIISD 487
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERA-TFSQDHFFAMLNLAKDRIADLIKLQK 235
+ ED D+D T G I Q ++ + D +L A + +++
Sbjct: 488 IIGEEDHFGDLDFKITGTQYG-ITACQMDVKKTQGLTYDLLNQILKQALEGRIFILRKML 546
Query: 236 DVISN 240
+V+
Sbjct: 547 EVLPE 551
Score = 91.4 bits (225), Expect = 9e-17, Method: Composition-based stats.
Identities = 40/233 (17%), Positives = 68/233 (29%), Gaps = 27/233 (11%)
Query: 7 QENQMREISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVP----MWIRNTKHGWITA 61
R I + ++K A+GS +V+ DT LL T + ++ + +
Sbjct: 10 SLKDGRSIIIETGELAKQADGSAIVRLDDTMLLATVVVSKETKNETNFLPLTVDYREKYS 69
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
G +P R GR R++ R LR QI+I
Sbjct: 70 AGGKIPGGFIKR------EGRPSDEEILTMRLVDRVLRPTFPEWFKKEIQIMISLLSYDK 123
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
A A AL G ++ I I++ +
Sbjct: 124 TVLPDGLAGLAASTALSVAGV-------------PFNGPISEIRIIRSKRNFIINPSLDQ 170
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
D+D I+ ++ E + F + A + I I+ Q
Sbjct: 171 LKEADIDLIV-GASMNSIIMIE--GEMKEIKESEFLNTIIHAHEEIQSQIEAQ 220
>gi|210615800|ref|ZP_03290781.1| hypothetical protein CLONEX_02999 [Clostridium nexile DSM 1787]
gi|210150136|gb|EEA81145.1| hypothetical protein CLONEX_02999 [Clostridium nexile DSM 1787]
Length = 696
Score = 125 bits (314), Expect = 4e-27, Method: Composition-based stats.
Identities = 39/242 (16%), Positives = 71/242 (29%), Gaps = 12/242 (4%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT--LEEKVPMWIRNTKHGWI 59
R GR +Q+R ++ + GS + G T + T T I
Sbjct: 312 RPDGRAIDQIRPLAAETDIIPRVHGSAMFTRGQTQ-ICTITTLAPLSEAQRIDGLDEAET 370
Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119
+ Y V S G R + RAL V+ I +
Sbjct: 371 SKRYMHHYNFPSYSVGETKPSRGPGRREIGHGALAERALVPVLPTEEEFPYAIRTVSETF 430
Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179
+++G T A+I + ++L ++ V + D+
Sbjct: 431 ESNGSTSQASICASSMSLMAAGVPIKSAVAGISAGLV-------TGDTDDDYLVLTDIQG 483
Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI-KLQKDVI 238
ED D+D T G I +Q + ++ + K ++ ++ I
Sbjct: 484 LEDFFGDMDFKVAGTHKG-ITAIQMDIKIHGLTRPIIEEAIARTKQARTYILDEVMAKTI 542
Query: 239 SN 240
Sbjct: 543 EQ 544
Score = 92.6 bits (228), Expect = 4e-17, Method: Composition-based stats.
Identities = 36/234 (15%), Positives = 77/234 (32%), Gaps = 27/234 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----HGWITAEYGML 66
R + + V+ A G+ L+ +G+T +L+TAT EK I + G +
Sbjct: 12 RTLRVDVGRVAAQANGAALMHYGETVVLSTATASEKPREGIDFFPLSVEYEEKLYAVGKI 71
Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
P R G+ + R+I R +R + + + D
Sbjct: 72 PGGFNKR------EGKASENAILTSRVIDRPMRPLFPKDYRNDVTLNNLVLSVDPDCSPE 125
Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
A+ G+ +A G + GM+ G + + + + + D
Sbjct: 126 LTAMLGSAIAT-------------AISDIPFDGPTSTTQVGMIDGEFVFNPNAAQRAVSD 172
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
+ T ++ ++ A + + A + ++IK +++
Sbjct: 173 MQLTVASTRD-KVIMIEAGANEVP--EAKMIEAIFAAHEVNQEVIKFIDTIVAE 223
>gi|255505938|ref|ZP_05349011.3| polyribonucleotide nucleotidyltransferase [Bryantella formatexigens
DSM 14469]
gi|255265001|gb|EET58206.1| polyribonucleotide nucleotidyltransferase [Bryantella formatexigens
DSM 14469]
Length = 689
Score = 125 bits (314), Expect = 5e-27, Method: Composition-based stats.
Identities = 38/242 (15%), Positives = 73/242 (30%), Gaps = 12/242 (4%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT--LEEKVPMWIRNTKHGWI 59
R GR N++R ++ + GS + G T + T T I
Sbjct: 306 RPDGRAINEIRPLAAEVDLIPRVHGSAMFTRGQTQ-ICTITTLAPLSEAQKIDGLDASET 364
Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119
+ Y V S G R + RAL V+ I +
Sbjct: 365 SKRYMHHYNFPSYSVGETKPSRGPGRREIGHGALAERALVPVLPSEEEFPYAIRTVSETF 424
Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179
+++G T A+I + ++L ++ V + D+
Sbjct: 425 ESNGSTSQASICASTMSLMAAGVPIKTAVAGISCGLV-------TGETDDDYIVLTDIQG 477
Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI-KLQKDVI 238
ED D+D T G I +Q + ++ + ++ ++ ++ I
Sbjct: 478 LEDFFGDMDFKVAGTHKG-ITAIQMDIKIHGLTRPIIEEAIARTREARLYILDEVMAKTI 536
Query: 239 SN 240
+
Sbjct: 537 AE 538
Score = 94.5 bits (233), Expect = 1e-17, Method: Composition-based stats.
Identities = 38/234 (16%), Positives = 79/234 (33%), Gaps = 27/234 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----HGWITAEYGML 66
R + + V+K A G+ L+ +GDT +L+TAT EK I + G +
Sbjct: 6 RTLRVDVGRVAKQANGAVLMHYGDTTVLSTATASEKPREGIDFFPLSVEYEEKMYAVGKI 65
Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
P R G+ + R+I R +R + + + D
Sbjct: 66 PGGFNKR------EGKASENAVLTARVIDRPMRPLFPKDYRNDVTLDNLVLSVDPDCSPE 119
Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
A+ G+ +A G + G++ G + + + + + D
Sbjct: 120 LTAMLGSAIAT-------------VISDIPFDGPTSTTQVGLVNGEFVFNPNAAQKAVSD 166
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
+ T ++ ++ A +D + A + ++IK +++
Sbjct: 167 LQLTVASTRD-KVIMIEAGANEVP--EDKMIEAIFAAHEVNQEVIKFIDTIVAE 217
>gi|153855229|ref|ZP_01996395.1| hypothetical protein DORLON_02409 [Dorea longicatena DSM 13814]
gi|149752228|gb|EDM62159.1| hypothetical protein DORLON_02409 [Dorea longicatena DSM 13814]
Length = 695
Score = 125 bits (314), Expect = 5e-27, Method: Composition-based stats.
Identities = 39/239 (16%), Positives = 73/239 (30%), Gaps = 10/239 (4%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL-EEKVPMWIRNTKHGWIT 60
R GR+ +Q+R ++ + GS + G T + TL + T
Sbjct: 312 RPDGREIDQIRPLAAEVDLIPRVHGSAMFTRGQTQICNICTLAPLSEAQKLDGLDEAETT 371
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
Y V S G R + RAL V+ A I + +
Sbjct: 372 KRYMHHYNFPSYSVGETKPSRGPGRREIGHGALAERALLPVLPSEAEFPYAIRTVSETFE 431
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
++G T A++ + ++L ++ V + D+
Sbjct: 432 SNGSTSQASVCASSMSLMSAGVPIKAAVAGISCGLV-------TGDTDDDYLVLTDIQGL 484
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI-KLQKDVI 238
ED D+D T G I +Q + ++ + + +I ++ I
Sbjct: 485 EDFFGDMDFKVAGTHKG-ITAIQMDIKIHGLTRPIIEEAIAKTRKARLYIIDEVMNKAI 542
Score = 96.1 bits (237), Expect = 4e-18, Method: Composition-based stats.
Identities = 37/234 (15%), Positives = 75/234 (32%), Gaps = 27/234 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----HGWITAEYGML 66
R + + V+K A G+ L+ +GDT +L TAT EK I + G +
Sbjct: 12 RPLKVDVGRVAKQANGAVLMHYGDTTVLCTATASEKPRDGIDFFPLSVEYNERMYAVGKI 71
Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
P R G+ + R+I R +R + + + D
Sbjct: 72 PGGFNKR------EGKASENAILTCRVIDRPMRPLFPKDYRNDVTLENLVLSVDQDCAPE 125
Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
A+ GA +A G ++ G++ G + + + + D
Sbjct: 126 LTAMLGAAIAT-------------TISDIPFDGPISTTQVGLVDGEFVFNPTAAQRAVSD 172
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
+ T ++ ++ A + + A + +I +++
Sbjct: 173 MALTVASTRE-KVIMIEAGANEVP--EQQMIDAIFAAHELNQKVIAFIDTIVAE 223
>gi|119872348|ref|YP_930355.1| exosome complex exonuclease Rrp41 [Pyrobaculum islandicum DSM 4184]
gi|254782537|sp|A1RST0|ECX1_PYRIL RecName: Full=Probable exosome complex exonuclease 1
gi|119673756|gb|ABL88012.1| ribosomal RNA-processing protein RRP41/SKI6 [Pyrobaculum islandicum
DSM 4184]
Length = 246
Score = 125 bits (314), Expect = 5e-27, Method: Composition-based stats.
Identities = 60/243 (24%), Positives = 107/243 (44%), Gaps = 22/243 (9%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKV-PMWIRNTKHGWI 59
+R GR +QMRE+++T + A+GS +V +G T + ++ P + G +
Sbjct: 13 VRADGRAPDQMREVNITVGIVSNADGSAMVSYGATTAVAAVYGPREMHPRHLSLPDRGVM 72
Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119
Y M P ST + K + R+ I +++ AL V L +I + +++
Sbjct: 73 RVRYHMAPFSTKDERKSPTPTRREIE----ISKILREALEPAVVLEQYPRSRIDVFIEIL 128
Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179
QADG TR A++T A +AL D +M D +S G++ G ++DL+
Sbjct: 129 QADGSTRVASLTAASLALADAGVYMRDLVIG-------------VSVGLVDGAVVLDLNG 175
Query: 180 GEDSTIDVDANF-VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
ED + D M + +Q +++D F LNLA + + +D +
Sbjct: 176 LEDQYGEGDLPVGYMPNLKRFTLLQLDG---AWTRDKFLEALNLAIKGAEFVYQKARDAL 232
Query: 239 SNE 241
++
Sbjct: 233 KSK 235
>gi|242088177|ref|XP_002439921.1| hypothetical protein SORBIDRAFT_09g022550 [Sorghum bicolor]
gi|241945206|gb|EES18351.1| hypothetical protein SORBIDRAFT_09g022550 [Sorghum bicolor]
Length = 242
Score = 125 bits (314), Expect = 5e-27, Method: Composition-based stats.
Identities = 64/243 (26%), Positives = 105/243 (43%), Gaps = 23/243 (9%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKV--PMWIRNTKHGW 58
R+ GR+ N+MR++ V A+GS L + G+T ++ +V N+
Sbjct: 10 FRVDGRRPNEMRQLKGEVGVVARADGSALFEMGNTRVIAAVYGPREVQNKGQQVNSNEAL 69
Query: 59 ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDV 118
+ EY M STG+R ++ R I +I + + + + + QI I V
Sbjct: 70 VRCEYRMAEFSTGDRRRKPKGDRRSTE----ISLVIRQTMEASILTHLMPRSQIDIYVQV 125
Query: 119 IQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLD 178
+QADGGTR+A I A +AL D M D V + S G LC P++DL+
Sbjct: 126 LQADGGTRSACINAATLALADAGIPMRDI-------------VTSCSAGYLCSTPLLDLN 172
Query: 179 YGEDSTIDVDANF-VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
Y EDS D ++ + +Q A+ D F ++ LA + + ++V
Sbjct: 173 YLEDSAGGSDVTVGILAKMDKVTLLQMDAK---LPMDTFENVMGLAIEGCKAIATYIREV 229
Query: 238 ISN 240
+
Sbjct: 230 LLE 232
>gi|11514023|pdb|1E3H|A Chain A, Semet Derivative Of Streptomyces Antibioticus PnpaseGPSI
Enzyme
Length = 757
Score = 125 bits (314), Expect = 5e-27, Method: Composition-based stats.
Identities = 39/241 (16%), Positives = 77/241 (31%), Gaps = 14/241 (5%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +R ++ GS L + G+T +L TL E+ +
Sbjct: 356 RIDGRGVTDIRTLAAEVEAIPRVHGSALFERGETQILGVTTLNXLRXEQQLDTLSPVTRK 415
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + + R+ G RA+ V+ I +
Sbjct: 416 RYXHNYNFPPYSVGETGRVGSPKRREIGHGAL----AERAIVPVLPTREEFPYAIRQVSE 471
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ ++G T ++ + +L + ++ + + G + D+
Sbjct: 472 ALGSNGSTSXGSVCASTXSLLNAGVPLKAPVAGIAXGLISQE-----INGETHYVALTDI 526
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED+ D D T + +Q + A L A+D ++ + +
Sbjct: 527 LGAEDAFGDXDFKVAGTKEF-VTALQLDTKLDGIPASVLAAALKQARDARLHILDVXXEA 585
Query: 238 I 238
I
Sbjct: 586 I 586
Score = 73.0 bits (177), Expect = 3e-11, Method: Composition-based stats.
Identities = 36/228 (15%), Positives = 65/228 (28%), Gaps = 15/228 (6%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGD-THLLTTATLEEKVPMWIRNT----KHGWITAEYGM 65
R I +++ A GS + D T +L+ T + + G
Sbjct: 37 RTIRFETGRLARQAAGSAVAYLDDDTXVLSATTASKNPKDQLDFFPLTVDVEERXYAAGK 96
Query: 66 LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125
+P S R GR + R+I R LR Q++ + D
Sbjct: 97 IPGSFFRR------EGRPSEDAILTCRLIDRPLRPSFKKGLRNEIQVVATIXALNPDHLY 150
Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPI--VDLDYGEDS 183
AI A + +++ + VA + L V +
Sbjct: 151 DVVAINAASASTQLAGLPFSGPIGGVRVALIRGQWVAFPTHTELEDAVFDXVVAGRVLED 210
Query: 184 TIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231
+ +++ A +++ A L+ AK I L
Sbjct: 211 GDVAIXXVEAEATEKTIQLVKDGAEAP-TEEVVAAGLDAAKPFIKVLC 257
>gi|242091341|ref|XP_002441503.1| hypothetical protein SORBIDRAFT_09g028170 [Sorghum bicolor]
gi|241946788|gb|EES19933.1| hypothetical protein SORBIDRAFT_09g028170 [Sorghum bicolor]
Length = 242
Score = 125 bits (313), Expect = 6e-27, Method: Composition-based stats.
Identities = 63/243 (25%), Positives = 105/243 (43%), Gaps = 23/243 (9%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKV--PMWIRNTKHGW 58
R+ GR+ N+MR++ + A+GS L + G+T ++ +V N+
Sbjct: 10 FRVDGRRPNEMRQLKGEVGIVARADGSALFEMGNTRVIAAVYGPREVQNKGQQVNSNEAL 69
Query: 59 ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDV 118
+ EY M STG+R ++ R I +I + + + + + QI I V
Sbjct: 70 VRCEYRMAEFSTGDRRRKPKGDRRSTE----ISLVIRQTMEASILTHLMPHSQIDIYVQV 125
Query: 119 IQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLD 178
+QADGGTR+A I A +AL D M D V + S G LC P++DL+
Sbjct: 126 LQADGGTRSACINAATLALADAGIPMRDI-------------VTSCSAGYLCSTPLLDLN 172
Query: 179 YGEDSTIDVDANF-VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
Y EDS D ++ + +Q A+ D F ++ LA + + ++V
Sbjct: 173 YLEDSAGGSDVTVGILAKMDKVTLLQMDAK---LPMDTFENVMGLAIEGCKAIASYIREV 229
Query: 238 ISN 240
+
Sbjct: 230 LLE 232
>gi|331002061|ref|ZP_08325581.1| polyribonucleotide nucleotidyltransferase [Lachnospiraceae oral
taxon 107 str. F0167]
gi|330411857|gb|EGG91262.1| polyribonucleotide nucleotidyltransferase [Lachnospiraceae oral
taxon 107 str. F0167]
Length = 700
Score = 125 bits (313), Expect = 7e-27, Method: Composition-based stats.
Identities = 43/245 (17%), Positives = 74/245 (30%), Gaps = 18/245 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL-----EEKVPMWIRNTKH 56
R GR NQ+R ++ + GS + G T + TL +K+
Sbjct: 315 RPDGRAMNQIRTLAAETDIIPRVHGSAMFTRGQTQICNIVTLAPLSEAQKIDGLNLLETT 374
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
+Y S G R+ G RAL V+ I
Sbjct: 375 KRYIHQYNFPSYSVGETRPSRGPGRREIGHGAL----AERALIPVLPTPEEFPYAIRSVS 430
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+ +++G T A+ + +AL ++ V + D
Sbjct: 431 ETFESNGSTSMASTCSSCMALMAAGVPIKRMVAGISCGLV-------TGDSDDDYVLLTD 483
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL-QK 235
+ ED D+D TD G I +Q + +QD + + ++ +
Sbjct: 484 IQGLEDFFGDMDFKVTGTDMG-ITAIQMDIKIHGLTQDIVKGAIAKCHEARDFILNTCMR 542
Query: 236 DVISN 240
IS
Sbjct: 543 PCISE 547
Score = 94.5 bits (233), Expect = 1e-17, Method: Composition-based stats.
Identities = 36/234 (15%), Positives = 78/234 (33%), Gaps = 27/234 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----HGWITAEYGML 66
R + + V+ A G+ L+ +G+T +L+TAT +K I + G +
Sbjct: 15 RTLRVDIGRVAAQANGAALMHYGETTVLSTATASDKPREGIDFFPLSVEYEEKMYAVGKM 74
Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
P R G+ + R+I R +R + + + D
Sbjct: 75 PGGYNKR------EGKASENAILTSRVIDRPMRPLFPKDYRNDVTLNNLVMSVDPDCSPE 128
Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
A+ G+ +A G A GM+ G+ +V+ + + + D
Sbjct: 129 LTAMLGSAIAT-------------AISDIPFDGPCATTQIGMVGGFFVVNPNEEQMAVSD 175
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
+ T ++ ++ A + + A ++I+ +++
Sbjct: 176 LKLTVASTRD-KVIMIEAGANE--IPDEKMIEAIYKADSVNKEIIEFIDKIVAE 226
>gi|195391142|ref|XP_002054222.1| GJ22920 [Drosophila virilis]
gi|194152308|gb|EDW67742.1| GJ22920 [Drosophila virilis]
Length = 769
Score = 124 bits (312), Expect = 7e-27, Method: Composition-based stats.
Identities = 44/248 (17%), Positives = 82/248 (33%), Gaps = 17/248 (6%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIR--------- 52
R GR + +R IS + K GS L + G T + T +L+
Sbjct: 352 RCDGRDYDSLRNISCQVDMYKPLHGSALFQRGQTQVFCTVSLDSPESAMKLDTLAALDSG 411
Query: 53 NTKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQI 112
K Y P +TG + + R+ G R+L + +
Sbjct: 412 GLKAKNFMLHYEFPPYATGEVGRIGPLGRRELGHGAL----AERSLLPTLPHDYPF--TV 465
Query: 113 IIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY 172
+ +V++++G + A++ G +AL D + + + V K +
Sbjct: 466 RLTSEVLESNGSSSMASVCGGSLALMDAGVPVTAPAAGVAIGLVTKYENNDTKH-LQDYR 524
Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
+ D+ ED D+D T G +Q + L A D + ++
Sbjct: 525 ILTDILGIEDYMGDMDMKVAGTRKG-FTAIQADLKIPGIPLKVVMESLQKATDAKSKILD 583
Query: 233 LQKDVISN 240
+ + I
Sbjct: 584 IMGESIKE 591
Score = 85.7 bits (210), Expect = 5e-15, Method: Composition-based stats.
Identities = 29/225 (12%), Positives = 68/225 (30%), Gaps = 18/225 (8%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRST 70
R ++++ ++++A G+ + + GDT ++ TA + K
Sbjct: 47 RNMTISSGKLARFANGTAVCQMGDTAVMVTAVAKAKATPGQNFMPLVVDYRLKNAASGRI 106
Query: 71 GNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAI 130
+ + R+I R+LR + Q++ + + A AI
Sbjct: 107 P--MNFMRRELGPSEKEILSARLIDRSLRPLFAKDYRNETQLVCNMLAMDAVHSPDVLAI 164
Query: 131 TGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDAN 190
A +A G + A+ G+ G +++ E + +D
Sbjct: 165 NAASMA-------------LSLSDIPWNGPIGAVRVGLNDGEVLINPTRRELQSSQLDLV 211
Query: 191 FVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
T +V ++ + + +I +
Sbjct: 212 VSATKQNLVVMLE--GKGNVVLMQDLLKAIKQGTREAQFIIHEIE 254
>gi|224130470|ref|XP_002320845.1| predicted protein [Populus trichocarpa]
gi|118489833|gb|ABK96716.1| unknown [Populus trichocarpa x Populus deltoides]
gi|222861618|gb|EEE99160.1| predicted protein [Populus trichocarpa]
Length = 241
Score = 124 bits (312), Expect = 7e-27, Method: Composition-based stats.
Identities = 61/242 (25%), Positives = 103/242 (42%), Gaps = 22/242 (9%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVP-MWIRNTKHGWI 59
+RL GR+ +MR++ A+GS + + G+T ++ +V + +
Sbjct: 9 LRLDGRRPMEMRQLRAQIGAVAKADGSAVFEMGNTKVIAAVYGPREVQNRSQQINDQALV 68
Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119
EY M STG+R ++ R I +I +A+ + + + QI I V+
Sbjct: 69 RCEYSMANFSTGDRRRKPKGDRRSTE----ISLVIRQAMEECILTNLMPRSQIDIYVQVL 124
Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179
QADGGTR+A I A +AL D M D V + S G L P++DL+Y
Sbjct: 125 QADGGTRSACINAATLALADAGIPMRDL-------------VTSCSAGFLNSTPLLDLNY 171
Query: 180 GEDSTIDVDANF-VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
EDS D ++ + +Q A+ D F ++ LA + + ++V+
Sbjct: 172 VEDSAGGPDVTVGILPKLDKVTLLQMDAK---LPIDTFENVMQLAVEGCKAIANYIREVL 228
Query: 239 SN 240
Sbjct: 229 LE 230
>gi|297622726|ref|YP_003704160.1| ribonuclease PH [Truepera radiovictrix DSM 17093]
gi|297163906|gb|ADI13617.1| ribonuclease PH [Truepera radiovictrix DSM 17093]
Length = 236
Score = 124 bits (312), Expect = 8e-27, Method: Composition-based stats.
Identities = 97/237 (40%), Positives = 135/237 (56%), Gaps = 7/237 (2%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKH--GW 58
MR GRQ Q+REI +T +++AEGS LV++GDT +L T T+E K+P +R K GW
Sbjct: 1 MRK-GRQPFQLREIRVTPGYNRFAEGSALVEWGDTRVLATVTVENKLPPHLRGKKGRVGW 59
Query: 59 ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDV 118
+TAEY MLPRST R + GGRS EIQR+IGR+LRSV DL+ + + +D DV
Sbjct: 60 LTAEYAMLPRSTAERT--QRERLYAGGRSLEIQRLIGRSLRSVTDLTLFHGQTLTVDVDV 117
Query: 119 IQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLD 178
+QADGGTR A I + ALH + L VAA+S G++ G ++DLD
Sbjct: 118 LQADGGTRCAGILAGYAALHHAAGRLVRK--GALDEWPLTHEVAAVSVGVVRGETLLDLD 175
Query: 179 YGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
+ ED+ ++D N V T G +VEVQGS E + ++ + L+ +
Sbjct: 176 FHEDAAAEIDLNVVATADGKLVEVQGSGEERPIDAGRYVELVAQGISAVQGLLAHVR 232
>gi|16082286|ref|NP_394747.1| exosome complex exonuclease Rrp41 [Thermoplasma acidophilum DSM
1728]
gi|29336949|sp|Q9HIP2|ECX1_THEAC RecName: Full=Probable exosome complex exonuclease 1
gi|10640637|emb|CAC12415.1| RNase PH (yeast SIK6) related protein [Thermoplasma acidophilum]
Length = 248
Score = 124 bits (312), Expect = 8e-27, Method: Composition-based stats.
Identities = 59/243 (24%), Positives = 110/243 (45%), Gaps = 23/243 (9%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKV-PMWIRNTKHGWI 59
+RL GR N++R I + V A+GS +++G ++ ++ P ++ H +
Sbjct: 17 LRLDGRSFNELRPIKIQAGVLNRADGSAYIEWGGNKIMVGVYGPKEAYPKHSQDIDHAIV 76
Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119
A Y M S R + R+ EI ++I AL S + + +I + +V+
Sbjct: 77 KARYNMAAFSVDERKRPG-----PDRRTMEISKVISEALSSSIMIEQFPRAEIDVYIEVL 131
Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179
QAD GTR A +T A VAL D M D V + G + G+ ++DL
Sbjct: 132 QADAGTRIAGLTAATVALADAGVPMRD-------------MVVGCTAGKVDGHMVLDLSK 178
Query: 180 GEDSTIDVDANF-VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
ED+ + D +M +G IV +Q + ++D + +++ + + ++Q++ +
Sbjct: 179 EEDNYGEADIPIAIMPKTGDIVLMQMDGD---VTEDELYQAMDMIFEATKRISQIQREAL 235
Query: 239 SNE 241
N+
Sbjct: 236 LNK 238
>gi|254168259|ref|ZP_04875105.1| exosome complex exonuclease 1 [Aciduliprofundum boonei T469]
gi|197622768|gb|EDY35337.1| exosome complex exonuclease 1 [Aciduliprofundum boonei T469]
Length = 243
Score = 124 bits (312), Expect = 8e-27, Method: Composition-based stats.
Identities = 57/243 (23%), Positives = 103/243 (42%), Gaps = 23/243 (9%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKV-PMWIRNTKHGWI 59
+R+ GR NQ+R I + V K A+GS +++G ++ + P ++ +
Sbjct: 13 LRIDGRLPNQLRPIKMEVGVLKRADGSAFIEWGGNKIIAAVYGPHEAYPKHVQEADRAIV 72
Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119
A Y M P S R + R+ E+ ++I AL SV+ + I + +V+
Sbjct: 73 RARYSMAPFSVDERKRPG-----PDRRAIELSKVISEALESVIFVEKYPRTSIDVYIEVL 127
Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179
QAD GTR A IT A +AL D M D + + G + ++DL+
Sbjct: 128 QADAGTRVAGITVASLALADAGIPMRDL-------------IVGCAAGKIDDVVVLDLNK 174
Query: 180 GEDSTIDVDANF-VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
ED+ D +M + I +Q + S + +++A D + ++Q + +
Sbjct: 175 EEDNFGQADVPMAIMPRTKEIALLQMDGD---MSYEELTTAMDMAMDAAEKIHEMQVEAL 231
Query: 239 SNE 241
+
Sbjct: 232 KRK 234
>gi|229829166|ref|ZP_04455235.1| hypothetical protein GCWU000342_01251 [Shuttleworthia satelles DSM
14600]
gi|229792329|gb|EEP28443.1| hypothetical protein GCWU000342_01251 [Shuttleworthia satelles DSM
14600]
Length = 710
Score = 124 bits (312), Expect = 8e-27, Method: Composition-based stats.
Identities = 39/243 (16%), Positives = 72/243 (29%), Gaps = 18/243 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE-----EKVPMWIRNTKH 56
R GR +Q+R +S + GS + G T + TL ++V N +
Sbjct: 325 RPDGRALDQIRPLSAEVDLIPRVHGSAMFTRGQTQICNIVTLAPLSEVQRVEGLDANVTN 384
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
+Y S G R+ G RAL V+ I
Sbjct: 385 KRYIHQYNFPSYSVGETKPSRGPGRREIGHGAL----AERALLPVLPTVEDFPYAIRAVS 440
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+ +++G T A+ + ++L ++ V + D
Sbjct: 441 ETFESNGSTSMASTCASCMSLMAAGVPIKKMVAGISCGLVTGEDD-------DDYVLLTD 493
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK-LQK 235
+ ED D+D T G I +Q + ++ + + ++
Sbjct: 494 IQGLEDFFGDMDFKVTGTKDG-ITAIQMDIKIHGLTRTIVEEAIRRTHEARLFIMDNCMS 552
Query: 236 DVI 238
I
Sbjct: 553 KAI 555
Score = 101 bits (252), Expect = 8e-20, Method: Composition-based stats.
Identities = 41/234 (17%), Positives = 73/234 (31%), Gaps = 27/234 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----HGWITAEYGML 66
RE+ + V+K A G+ ++++G+T LL TAT EK I G
Sbjct: 25 RELQIEVGKVAKQANGAVMIRYGETTLLCTATASEKPREGIDFFPLSVEFEEKYYSVGKF 84
Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
P R G+ S R+I R +R + + +
Sbjct: 85 PGGFNKR------EGKASENSVLTARVIDRPMRPLFPKDYRNDVTLNNLVLSVDPSCRPE 138
Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
A+ G +A G A GM+ G +++ + D
Sbjct: 139 LVAMIGTAMAT-------------AISDIPFDGPCAMTQVGMINGDLLINPSQSDWDNGD 185
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
+ T ++ ++ A S + A D +I L +++
Sbjct: 186 LRLTVASTRD-KVIMIEAGANE--LSDQEMIEAIYKAHDVNQTIIALIDQMVAE 236
>gi|312380418|gb|EFR26416.1| hypothetical protein AND_07550 [Anopheles darlingi]
Length = 738
Score = 124 bits (311), Expect = 9e-27, Method: Composition-based stats.
Identities = 46/247 (18%), Positives = 85/247 (34%), Gaps = 16/247 (6%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE--------EKVPMWIR 52
+R GR + +R IS + + K GS L + G T + +T L+ + V
Sbjct: 310 VRCDGRGLDDLRPISCSVNLHKPLHGSALFQRGQTQVFSTVALDSPESALRLDPVTSLDA 369
Query: 53 NTKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQI 112
K Y P +TG K + R+ G + L ++ I
Sbjct: 370 GMKSKNFFLHYEFPPYATGETGKIGPIGRREIGHGAL----AEKGLVPIIPAEHPF--TI 423
Query: 113 IIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY 172
+ +V++++G + A + +AL D + + + + V K +L
Sbjct: 424 RLTSEVLESNGSSSMATVCAGSMALMDAGVPVTEAAAGVAIGLVTKYENNDTKH-LLDYR 482
Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
+ DL ED D+D T G I +Q + L + + ++
Sbjct: 483 ILSDLLGIEDYMGDMDMKVAGTRRG-ITAIQADLKIPGIPLKVVMEALQKSMEARFKILD 541
Query: 233 LQKDVIS 239
+ I
Sbjct: 542 IMDGTIG 548
Score = 75.3 bits (183), Expect = 6e-12, Method: Composition-based stats.
Identities = 36/225 (16%), Positives = 73/225 (32%), Gaps = 25/225 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEK---VPMWIRNTKHGWITAEYGMLP 67
R + ++ +++A+G +V GDT ++ TA +K + +A G +P
Sbjct: 7 RVVRISSGKYARFADGCAVVTIGDTAVMVTAVARQKSQNTSFLPLVVDYRQKSAAAGRIP 66
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
+ R + R++ R++R + QI+ + I +
Sbjct: 67 TNFLRR------ELGPSEKEILSARLVDRSIRPLFPADFRLDTQIVCNMLAIDSSNPPDV 120
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
AI GA A G V A+ G++ IV+ E +
Sbjct: 121 QAINGASAA-------------LALSDIPWNGPVGAVRLGLVDNEVIVNPTRREMQLSAL 167
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
D T +V ++ +++ + +I
Sbjct: 168 DLVVTATRQNLVVMLE--GRGNVVNENEIRMAIKRGTKEAQLIIN 210
>gi|157111536|ref|XP_001651608.1| polyribonucleotide nucleotidyltransferase [Aedes aegypti]
gi|108883782|gb|EAT48007.1| polyribonucleotide nucleotidyltransferase [Aedes aegypti]
Length = 777
Score = 124 bits (311), Expect = 1e-26, Method: Composition-based stats.
Identities = 46/247 (18%), Positives = 87/247 (35%), Gaps = 16/247 (6%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE--------EKVPMWIRN 53
R GRQ + +R+IS + K GS L + G T + T L+ + +
Sbjct: 351 RCDGRQLDDLRKISCGVNLHKPLHGSALFQRGQTQVFATVALDSHESALKLDPITSLDMG 410
Query: 54 TKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQII 113
K Y P +TG K V R+ G + L ++ I
Sbjct: 411 VKSKNFFLHYEFPPYATGETGKIGPVGRREIGHGAL----AEKGLVPIIPHEHPF--TIR 464
Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP 173
+ +V++++G + A + +AL D +++ + + V K +
Sbjct: 465 LTAEVLESNGSSSMATVCAGSMALMDAGIPVQEAAAGVAIGLVTKYENNDTKH-LQDYRI 523
Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
+ DL ED D+D T G + +Q + L A + ++ +
Sbjct: 524 LTDLLGIEDYMGDMDMKVAGTRRG-MTAIQADIKVPGIPLKVVMESLQKAMEARFRILDI 582
Query: 234 QKDVISN 240
+ I++
Sbjct: 583 MDETIAS 589
Score = 70.3 bits (170), Expect = 2e-10, Method: Composition-based stats.
Identities = 31/231 (13%), Positives = 71/231 (30%), Gaps = 27/231 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKV-----PMWIRNTKHGWITAEYGM 65
R I ++ +++A+G +V GDT ++ TA + K + A G
Sbjct: 45 RVIRISSGKYARFADGCSVVSVGDTAVMVTAVAKPKPSGGNNSFLPLVVDYRQKAAAAGR 104
Query: 66 LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125
+P + R + R++ R++R + Q++ + I +
Sbjct: 105 IPTNFLRR------ELGPSEKEILAARLVDRSIRPMFPAEYRSDTQLVCNMLAIDSSNLP 158
Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185
AI A + G + A+ G++ I++ E
Sbjct: 159 DVQAINAA-------------SAALALSDIPWNGPIGAVRVGLVDNEIIINPTRKELQLS 205
Query: 186 DVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+D +V ++ +++ + +I +
Sbjct: 206 SLDLVVTAAKQNLVVMLE--GRGNVVNENELRMAIKKGTKEAQLIINGIEK 254
>gi|229827407|ref|ZP_04453476.1| hypothetical protein GCWU000182_02795 [Abiotrophia defectiva ATCC
49176]
gi|229788345|gb|EEP24459.1| hypothetical protein GCWU000182_02795 [Abiotrophia defectiva ATCC
49176]
Length = 697
Score = 124 bits (311), Expect = 1e-26, Method: Composition-based stats.
Identities = 40/245 (16%), Positives = 74/245 (30%), Gaps = 18/245 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE-----EKVPMWIRNTKH 56
R GR+ Q+R ++ + GS + G T + TL +KV +
Sbjct: 312 RPDGREMTQIRALAAETDIIPRVHGSAMFTRGQTQICNITTLAPLSEVQKVDGLNAEETY 371
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y S G R+ G RAL V+ I
Sbjct: 372 KRYIHHYNFPSYSVGETKPSRGPGRREIGHGAL----AERALIPVLPSEEEFPYAIRTVS 427
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+ +++G T A+ + ++L ++ V + D
Sbjct: 428 ETFESNGSTSMASTCASCMSLMAAGVPIKKMVAGISCGLV-------TGDTDDDYVLLTD 480
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL-QK 235
+ ED D+D T G I +Q + +++ + K+ ++ K
Sbjct: 481 IQGLEDFFGDMDFKVTGTTDG-ITAIQMDIKIHGLTREIVEGAIARTKEARMFIMDTCMK 539
Query: 236 DVISN 240
I+
Sbjct: 540 PAIAE 544
Score = 93.4 bits (230), Expect = 2e-17, Method: Composition-based stats.
Identities = 35/234 (14%), Positives = 77/234 (32%), Gaps = 27/234 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----HGWITAEYGML 66
R +++ V+K A G+ L+ +GDT +L+T T EK I + G +
Sbjct: 12 RTLTVDVDRVAKQANGAALMHYGDTVVLSTCTASEKPREGIDFFPLSVEYEEKQYAVGKI 71
Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
P R G+ + R+I R +R + + +
Sbjct: 72 PGGFNKR------EGKASENAVLTSRVIDRPMRPLFPKDYRNDVTLNNLVMSVDPTCSPE 125
Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
A+ G+ +A G A G++ G +++ E +
Sbjct: 126 LTAMLGSAIAT-------------AISDVPFDGPCATTQVGLIDGEFVINPSNAEMANSA 172
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
+ T ++ ++ A+ + + A + ++I + +++
Sbjct: 173 LKLTVASTKE-KVIMIEAGADE--IPEAKMIEAIYKAHEVNQEIIVFIEKIVAE 223
>gi|332017453|gb|EGI58176.1| Polyribonucleotide nucleotidyltransferase 1, mitochondrial
[Acromyrmex echinatior]
Length = 616
Score = 124 bits (311), Expect = 1e-26, Method: Composition-based stats.
Identities = 49/247 (19%), Positives = 85/247 (34%), Gaps = 17/247 (6%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE--------EKVPMWIR 52
+R GR + +R+IS + GS + + G T ++ T TL+ + M I
Sbjct: 203 VRCDGRSPSHLRDISCQVDLFNPLHGSAVFQRGQTQVMCTVTLDSLENALKMDATSMLIS 262
Query: 53 NTKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQI 112
K Y P +T V R+ G +ALR V+ I
Sbjct: 263 GVKEKNFFLHYEFPPYATNETGNSTRVGRRELGHGAL----AEKALRPVLPKDYPF--TI 316
Query: 113 IIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY 172
+ +V++++G + A + G +AL D + + V K +
Sbjct: 317 RLTSEVLESNGSSSMATVCGGSLALFDAGIPISSAAAGVAFGLVTKYNETNTQIED--YK 374
Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
+ D+ ED D+D T G Q + L+ + ++IK
Sbjct: 375 ILTDILGIEDYLGDMDFKIAGTK-GGFTAFQADIKIPGIPLKIIMECLDKTTNAKLEIIK 433
Query: 233 LQKDVIS 239
+ VI
Sbjct: 434 IMNKVIR 440
>gi|289595860|ref|YP_003482556.1| exosome complex exonuclease 1 [Aciduliprofundum boonei T469]
gi|289533647|gb|ADD07994.1| exosome complex exonuclease 1 [Aciduliprofundum boonei T469]
Length = 245
Score = 124 bits (311), Expect = 1e-26, Method: Composition-based stats.
Identities = 57/243 (23%), Positives = 103/243 (42%), Gaps = 23/243 (9%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKV-PMWIRNTKHGWI 59
+R+ GR NQ+R I + V K A+GS +++G ++ + P ++ +
Sbjct: 15 LRIDGRLPNQLRPIKMEVGVLKRADGSAFIEWGGNKIIAAVYGPHEAYPKHVQEADRAIV 74
Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119
A Y M P S R + R+ E+ ++I AL SV+ + I + +V+
Sbjct: 75 RARYSMAPFSVDERKRPG-----PDRRAIELSKVISEALESVIFVEKYPRTSIDVYIEVL 129
Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179
QAD GTR A IT A +AL D M D + + G + ++DL+
Sbjct: 130 QADAGTRVAGITVASLALADAGIPMRDL-------------IVGCAAGKIDDVVVLDLNK 176
Query: 180 GEDSTIDVDANF-VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
ED+ D +M + I +Q + S + +++A D + ++Q + +
Sbjct: 177 EEDNFGQADVPMAIMPRTKEIALLQMDGD---MSYEELTTAMDMAMDAAEKIHEMQVEAL 233
Query: 239 SNE 241
+
Sbjct: 234 KRK 236
>gi|226323220|ref|ZP_03798738.1| hypothetical protein COPCOM_00992 [Coprococcus comes ATCC 27758]
gi|225208410|gb|EEG90764.1| hypothetical protein COPCOM_00992 [Coprococcus comes ATCC 27758]
Length = 695
Score = 124 bits (311), Expect = 1e-26, Method: Composition-based stats.
Identities = 38/245 (15%), Positives = 74/245 (30%), Gaps = 18/245 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL-----EEKVPMWIRNTKH 56
R GR ++R ++ + GS + G T + T TL +KV +
Sbjct: 312 RPDGRAIEEIRPLAAEIDLIPRVHGSAMFTRGQTQICTITTLAPLSEAQKVDGLDESETS 371
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y S G R+ G RAL V+ I
Sbjct: 372 KRYMHHYNFPSYSVGETRPSRGPGRREIGHGAL----AERALVPVLPSEEEFPYAIRTVS 427
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+ +++G T A++ + ++L ++ V + D
Sbjct: 428 ETFESNGSTSQASVCASSMSLMAAGVPIKSAVAGISCGLV-------TGATDDDYLVLTD 480
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI-KLQK 235
+ ED D+D T G I +Q + ++ + + ++ ++
Sbjct: 481 IQGLEDFFGDMDFKVAGTHKG-ITAIQMDIKIHGLTRPIIEEAIARTRKARVYILDEVMA 539
Query: 236 DVISN 240
I+
Sbjct: 540 KTIAE 544
Score = 93.4 bits (230), Expect = 3e-17, Method: Composition-based stats.
Identities = 36/234 (15%), Positives = 76/234 (32%), Gaps = 27/234 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----HGWITAEYGML 66
R + + V+K A G+ L+ +GDT +L+TAT +K I + G +
Sbjct: 12 RTLRVDVGRVAKQANGAVLMHYGDTVVLSTATASDKPREGIDFFPLSVEYNEKLYAVGKI 71
Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
P R G+ + R+I R +R + + ++ D
Sbjct: 72 PGGFNKR------EGKASENAVLTCRVIDRPMRPLFPKDYRNDVTLENLVLSVEQDCSPE 125
Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
A+ G+ +A G A+ G++ G + + + D
Sbjct: 126 LTAMLGSAIAT-------------AISDIPFDGPTASTQVGLVDGELVFNPTAEQKEKSD 172
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
+ T ++ ++ A + + A + +I +++
Sbjct: 173 LALTVASTRE-KVIMIEAGANEVP--EAKMLEAIFAAHEVNQKVIAFIDQIVAE 223
>gi|156388129|ref|XP_001634554.1| predicted protein [Nematostella vectensis]
gi|156221638|gb|EDO42491.1| predicted protein [Nematostella vectensis]
Length = 247
Score = 124 bits (310), Expect = 1e-26, Method: Composition-based stats.
Identities = 57/243 (23%), Positives = 101/243 (41%), Gaps = 22/243 (9%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIR-NTKHGWI 59
+R+ GR+ +++R++ V A+GS ++ G+T L T +V + +
Sbjct: 12 LRIDGRKASELRKMVCKVGVLSQADGSAYIEMGNTKALATVYGPHEVQNKAKALHDRVLL 71
Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119
++GM STG R K R ++ E+ M+ R + + ++ QI I V+
Sbjct: 72 NVQFGMATFSTGERKK----KPRGDRKATELSMMVRRTFEAAILINLYPRSQIDIYVQVL 127
Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179
QADGG A I +AL + ++D V+A + + P++D++Y
Sbjct: 128 QADGGNHVACINAVTLALINAGIPLKDY-------------VSACTVSFVNDTPLMDINY 174
Query: 180 GEDSTIDVDANFVM-TDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
E+ST + S IV Q + D+ +L LA D+ L I
Sbjct: 175 LEESTGGPQLTLAILPKSDKIVLFQMDSR---LHMDNMDKVLALAMKGCKDIYVLLHRTI 231
Query: 239 SNE 241
+
Sbjct: 232 LED 234
>gi|269127530|ref|YP_003300900.1| guanosine pentaphosphate synthetase I/polyribonucleotide
nucleotidyltransferase [Thermomonospora curvata DSM
43183]
gi|268312488|gb|ACY98862.1| guanosine pentaphosphate synthetase I/polyribonucleotide
nucleotidyltransferase [Thermomonospora curvata DSM
43183]
Length = 775
Score = 124 bits (310), Expect = 1e-26, Method: Composition-based stats.
Identities = 46/244 (18%), Positives = 84/244 (34%), Gaps = 18/244 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
+R+ GR +R++S V GS L + G+T +L TL E+ + +
Sbjct: 342 VRIDGRGVKDLRQLSAEVHVVPRVHGSALFERGETQILGVTTLNMLRMEQTIDTLSPERT 401
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P STG + + R+ G RAL V+ I
Sbjct: 402 KRYMHHYNFPPYSTGETGRVGSPKRREIGHGAL----AERALIPVLPSREEFPYAIRQVS 457
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+ I ++G T ++ + ++L D ++D + + +
Sbjct: 458 EAIGSNGSTSMGSVCASTMSLLDAGVPLKDMVAGIAMGLIYENGEYVTLTD--------- 508
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED+ D+D T I +Q + + A L AK ++ + +
Sbjct: 509 ILGAEDAFGDMDFKVAGTRD-LITALQLDTKLDGIPAEVLAAALKQAKAARLAILDVMAE 567
Query: 237 VISN 240
IS
Sbjct: 568 AISE 571
Score = 79.9 bits (195), Expect = 3e-13, Method: Composition-based stats.
Identities = 38/245 (15%), Positives = 72/245 (29%), Gaps = 39/245 (15%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGD-THLLTTATLEEKVPMWIRNT----KHGWITAEYGM 65
R + +++ A GS +V + T +L+ T+ +K + G
Sbjct: 24 RTLRFETGRLARQAAGSAVVYLDEETMVLSATTVSKKPKETLDFFPLTVDVEERMYAAGR 83
Query: 66 LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125
+P S R GR + R+I R LR QI+ + +
Sbjct: 84 IPGSFFRR------EGRPSEDAILTCRLIDRPLRPSFAKGLRNEIQIVETVLALHPEHLY 137
Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185
AI A ++ G + + ++ G + + E
Sbjct: 138 DVVAINAASMST-------------LLSGVPFSGPIGGVRVALIDGQWVAFPTHSELERA 184
Query: 186 DVDANFVM----TDSGHIVEVQGSAERATF----------SQDHFFAMLNLAKDRIADLI 231
D I+ V+ + R T +++ L +K I L
Sbjct: 185 TFDMVVAGRTLDNGDVAIMMVEAESTRDTLKLVAEGAPAPTEERVAEGLEASKPFIKILC 244
Query: 232 KLQKD 236
Q++
Sbjct: 245 DAQRE 249
>gi|307183198|gb|EFN70107.1| Polyribonucleotide nucleotidyltransferase 1, mitochondrial
[Camponotus floridanus]
Length = 689
Score = 124 bits (310), Expect = 1e-26, Method: Composition-based stats.
Identities = 49/247 (19%), Positives = 89/247 (36%), Gaps = 17/247 (6%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE--------EKVPMWIR 52
+R GR + +R+IS + GS + + G T ++ T L+ + + M I
Sbjct: 276 VRCDGRSPDGLRDISCQVDLFNPLHGSAVFQRGQTQVMCTVALDSLESALKMDAMSMLIS 335
Query: 53 NTKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQI 112
K Y P +T + R+ G +ALRS++ I
Sbjct: 336 GVKEKNFFLHYEFPPYATNETGHVGRIGRREMGHGAL----AEKALRSILPKDYPF--TI 389
Query: 113 IIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY 172
+ +V++++G + A + G +AL D + + + V K + +
Sbjct: 390 RLTSEVLESNGSSSMATVCGGSLALLDAGIPISSSAAGVAIGLVTKY--NETNTDIDKYK 447
Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
+ D+ ED D+D T G +Q + L A ++IK
Sbjct: 448 ILTDILGIEDYLGDMDFKIAGTKRG-FTALQADVKIPGVPLKIIMECLYQAIAAKREIIK 506
Query: 233 LQKDVIS 239
+ DVI
Sbjct: 507 IMNDVIR 513
>gi|160940474|ref|ZP_02087819.1| hypothetical protein CLOBOL_05364 [Clostridium bolteae ATCC
BAA-613]
gi|158437054|gb|EDP14821.1| hypothetical protein CLOBOL_05364 [Clostridium bolteae ATCC
BAA-613]
Length = 707
Score = 124 bits (310), Expect = 1e-26, Method: Composition-based stats.
Identities = 41/245 (16%), Positives = 80/245 (32%), Gaps = 18/245 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL-----EEKVPMWIRNTKH 56
R GR ++R ++ + GS + G T +L TL +K+ N
Sbjct: 312 RPDGRAITEIRHLAAEVDLLPRVHGSGMFTRGQTQILNACTLAPLSEAQKLDGLDENETS 371
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y S G R+ G RAL V+ + I
Sbjct: 372 KRYMHHYNFPSFSVGETKPSRGPGRREIGHGAL----AERALIPVLPSAEEFPYAIRTVS 427
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+ ++++G T A+I + ++L +++ V + D
Sbjct: 428 ETMESNGSTSQASICASTLSLMAAGVPLKEMVAGISCGLV-------TGDTDDDYLVLTD 480
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK-LQK 235
+ ED D+D T +G I +Q + ++ + ++ ++ + +
Sbjct: 481 IQGLEDFFGDMDFKVGGTKNG-ITAIQMDIKIHGLTRPIIEEAIARTREARMYILDNVMR 539
Query: 236 DVISN 240
VIS
Sbjct: 540 PVISE 544
Score = 96.1 bits (237), Expect = 4e-18, Method: Composition-based stats.
Identities = 34/234 (14%), Positives = 79/234 (33%), Gaps = 27/234 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKHGWITAEYGML 66
R++++ V+ A G+ + +GDT +L+TAT E + + + ++ G +
Sbjct: 12 RKLTVEVGRVAAQASGAAFMHYGDTVVLSTATASSKPREGIDFFPLSVEYEEKLYSVGKI 71
Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
P R G+ + R+I R +R + + + +
Sbjct: 72 PGGFNKR------EGKASENAVLTCRVIDRPMRPLFPKDYRNDVTLDNIVMCVDPNCSPE 125
Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
A+ G+ +A G A G++ G I++ + D
Sbjct: 126 LTAMLGSAIAT-------------SISDIPFAGPCATTQVGLIDGEFIINPTADQKQVSD 172
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
+ T ++ ++ A + + A + ++IK +++
Sbjct: 173 MALTVASTRE-KVIMIEAGANEVP--EQIMIDAIFRAHEVNQEIIKFIDTIVAE 223
>gi|212721602|ref|NP_001131612.1| RNase PH homolog [Zea mays]
gi|194692034|gb|ACF80101.1| unknown [Zea mays]
Length = 242
Score = 124 bits (310), Expect = 1e-26, Method: Composition-based stats.
Identities = 64/243 (26%), Positives = 106/243 (43%), Gaps = 23/243 (9%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKV--PMWIRNTKHGW 58
R+ GR+ N+MR++ V A+GS L + G+T ++ +V N+K
Sbjct: 10 FRVDGRRPNEMRQLKGEVGVVARADGSALFEMGNTRVIAAVYGPREVQNKGQQVNSKEAL 69
Query: 59 ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDV 118
+ EY M STG+R ++ R I +I + + + + + QI I V
Sbjct: 70 VRCEYRMAEFSTGDRRRKPKGDRRSTE----ISLVIRQTMEASILTHLMPHSQIDIYVQV 125
Query: 119 IQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLD 178
+QADGGTR+A I A +AL D M D + + S G LC P++DL+
Sbjct: 126 LQADGGTRSACINAATLALADAGIPMRDIAT-------------SCSAGYLCSTPLLDLN 172
Query: 179 YGEDSTIDVDANF-VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
Y EDS D ++ + +Q A+ D F ++ LA + + ++V
Sbjct: 173 YLEDSAGGSDVTVGILAKMDKVTLLQMDAK---LPIDTFENVMGLAIEGCKAIATYIREV 229
Query: 238 ISN 240
+
Sbjct: 230 LLE 232
>gi|289672870|ref|ZP_06493760.1| ribonuclease PH [Pseudomonas syringae pv. syringae FF5]
Length = 186
Score = 123 bits (309), Expect = 2e-26, Method: Composition-based stats.
Identities = 97/181 (53%), Positives = 131/181 (72%), Gaps = 1/181 (0%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R SGR +Q+R I +TR +K+AEGS LV+FGDT ++ T ++E VP +++ GW+TA
Sbjct: 3 RPSGRAADQLRSIRITRNYTKHAEGSVLVEFGDTKVICTVSVENGVPRFLKGQGQGWLTA 62
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
EYGMLPR+TG R +REA G+QGGR+ EIQR+IGR+LR+ +D+S LG + +DCDVIQA
Sbjct: 63 EYGMLPRATGERNQREASRGKQGGRTLEIQRLIGRSLRAALDMSKLGDVTLYVDCDVIQA 122
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
DGGTRTA+ITGA VAL D L+ ++ + LK +AA+S GM G P++DLDY E
Sbjct: 123 DGGTRTASITGAMVALADALKVIKKRG-GLKGGDPLKQMIAAVSVGMYQGEPVLDLDYLE 181
Query: 182 D 182
D
Sbjct: 182 D 182
>gi|187734890|ref|YP_001877002.1| Polyribonucleotide nucleotidyltransferase [Akkermansia muciniphila
ATCC BAA-835]
gi|226702592|sp|B2UNA9|PNP_AKKM8 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|187424942|gb|ACD04221.1| Polyribonucleotide nucleotidyltransferase [Akkermansia muciniphila
ATCC BAA-835]
Length = 714
Score = 123 bits (309), Expect = 2e-26, Method: Composition-based stats.
Identities = 43/244 (17%), Positives = 88/244 (36%), Gaps = 14/244 (5%)
Query: 2 RLSGRQENQMREISLTRRVSK-YAEGSCLVKFGDTHLLTTATL-EEKVPMWIRNT----K 55
R GR Q+R ++ V GS + G+T L ATL + ++ N
Sbjct: 314 RADGRALKQLRPLTAEVNVLPPVVHGSAMFARGETMSLCLATLAPMEERQYMDNYTGSVN 373
Query: 56 HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115
Y P S G+ + + R+ G R++ VV I +
Sbjct: 374 EKRFILHYNFPPFSVGDTGRFGGQNRREIGHGAL----AERSIAPVVPGEQEFPYAIRVS 429
Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIV 175
++++++G T A++ ++L ++ + V + + + ++
Sbjct: 430 SEIMESNGSTSMASVCAGTMSLLAAGVPLKRPVAGISVGLVTEQND---QHEITSYKTLL 486
Query: 176 DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
D+ ED D+D T G + Q + +++AK D++K+
Sbjct: 487 DIIGSEDFYGDMDFKLCGTSEG-VTGYQLDLKLPGIPLSILEEAIHVAKAGRTDVLKVMN 545
Query: 236 DVIS 239
+ I+
Sbjct: 546 EAIA 549
Score = 104 bits (258), Expect = 1e-20, Method: Composition-based stats.
Identities = 44/229 (19%), Positives = 84/229 (36%), Gaps = 27/229 (11%)
Query: 13 EISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVP----MWIRNTKHGWITAEYGMLP 67
I++ +++ A+G+ +V+ GDT +L T KV + + ++ A GM P
Sbjct: 14 PITIETGKMARLADGAVVVRSGDTVVLVTVVSATKVKEGQTFFPLSVEYKEKAAAAGMFP 73
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R GR + RM R LR + Q+I +
Sbjct: 74 GGYFKR------EGRPTEKEILTCRMTDRPLRPMFPKGYFYDTQVITLLLSADGENEPDI 127
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
+I GA A V A+ G + G +++ + +
Sbjct: 128 LSINGASAAC-------------VVSDLPFAEPVGAVRVGRIDGQFVINPTNSQREHSQL 174
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
D F T ++ ++GSA ++ F A L +A++ + + + Q++
Sbjct: 175 DLVFAGTKD-QVIMIEGSANE--LPEEDFIAALRVAQENVKVICEKQEE 220
>gi|189239465|ref|XP_975230.2| PREDICTED: similar to exosome complex exonuclease RRP41, putative
[Tribolium castaneum]
Length = 249
Score = 123 bits (309), Expect = 2e-26, Method: Composition-based stats.
Identities = 49/242 (20%), Positives = 88/242 (36%), Gaps = 18/242 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+R GR+ +++R I V +GS ++ G T +L +V +
Sbjct: 13 LRQDGRRADELRRIRCKLGVFTEPDGSAYLEQGLTKVLAAVYGPHQVGFAKAQHDSAVVN 72
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
++ M STG R K R +S EI + +AL + + + QI + +V+
Sbjct: 73 CQFSMAVFSTGERKK----RPRGDRKSTEISIHLRQALTAAIKVELYPWTQIDVYVEVLH 128
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGG A + A +AL D +++ S +
Sbjct: 129 ADGGIYPACVNAATLALIDAGIPLKEYVCACTASLANNDVP-----------LLDVSHQE 177
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
E + SG IV ++ S F DH +L+ A D+ + + + +
Sbjct: 178 EIIGGPTLTVAALPMSGKIVLMEMS---QRFHVDHLQKVLDKALQGCKDIKSILDEAVKS 234
Query: 241 EV 242
+
Sbjct: 235 HI 236
>gi|302670339|ref|YP_003830299.1| polyribonucleotide nucleotidyltransferase [Butyrivibrio
proteoclasticus B316]
gi|302394812|gb|ADL33717.1| polyribonucleotide nucleotidyltransferase [Butyrivibrio
proteoclasticus B316]
Length = 696
Score = 123 bits (309), Expect = 2e-26, Method: Composition-based stats.
Identities = 39/245 (15%), Positives = 72/245 (29%), Gaps = 18/245 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL-----EEKVPMWIRNTKH 56
R GR+ Q+R +S + GS + G T + TL +KV
Sbjct: 312 RPDGREIKQIRPLSAEVDLIPRVHGSAMFTRGQTQICDVVTLAPLSEAQKVEGLDSFAAD 371
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
+Y S G R+ G RAL V+ I
Sbjct: 372 KRYVHQYNFPAYSVGETKVSRGPGRREIGHGAL----AERALLPVLPSVEEFPYAIRAVS 427
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+ +++G T A+ + ++L ++ V + D
Sbjct: 428 ETFESNGSTSMASTCASCMSLMAAGVPIKKMVAGISCGLV-------TGDTDDDFVVLTD 480
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL-QK 235
+ ED D+D T G I +Q + ++ + ++ ++
Sbjct: 481 IQGLEDFFGDMDFKVTGTKDG-ITAIQMDIKIHGLTKPIVETAIAQCREARFFIMDECMS 539
Query: 236 DVISN 240
I+
Sbjct: 540 KAIAE 544
Score = 97.6 bits (241), Expect = 1e-18, Method: Composition-based stats.
Identities = 38/234 (16%), Positives = 75/234 (32%), Gaps = 27/234 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKHGWITAEYGML 66
R + + V K A G +++GDT +L TAT + + + + ++G G
Sbjct: 12 RTLKVEIGKVGKQANGCAFMQYGDTTVLCTATASAKPRDGIDFFPLSVEYGEKFYAVGKF 71
Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
P R G+ + R+I R +R + I +
Sbjct: 72 PGGYNKR------EGKPSENAILTSRVIDRPMRPLFPKDYRNDVTIETMVMAVDPQCRPE 125
Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
A+ G + G A GM+ G IV+ + +T D
Sbjct: 126 LVAMLG-------------ASVSVSISDIPFDGPCAMTQIGMIDGELIVNPTQEQWNTGD 172
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
+ ++ ++ A ++ + A D +I+ K +++
Sbjct: 173 LKLTVASVGQ-KVIMIEAGANE--IPEEKMKEAIYKAHDVNLQIIEFFKGIVAE 223
>gi|291538574|emb|CBL11685.1| polyribonucleotide nucleotidyltransferase [Roseburia intestinalis
XB6B4]
Length = 719
Score = 123 bits (308), Expect = 2e-26, Method: Composition-based stats.
Identities = 39/245 (15%), Positives = 76/245 (31%), Gaps = 18/245 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE-----EKVPMWIRNTKH 56
R GR NQ+R ++ + GS + G T + TL +K+ N
Sbjct: 334 RPDGRAINQIRPLAAEVDLIPRVHGSAMFTRGQTQICDVVTLAPLSEVQKIDGLDENITT 393
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
+Y S G R+ G +AL +V+ I
Sbjct: 394 KRYIHQYNFPAYSVGETKVSRGPGRREIGHGAL----AEKALMAVLPSEEEFPYAIRAVS 449
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+ +++G T A+ + ++L ++ V + D
Sbjct: 450 ETFESNGSTSMASTCASCMSLMAAGVPLKAMVAGISCGLV-------TGDTDDDYLVLTD 502
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI-KLQK 235
+ ED D+D T G I +Q + ++ + A++ ++ ++
Sbjct: 503 IQGLEDFFGDMDFKVTGTHKG-ITAIQMDIKIHGLTRPIVEEAIGRAREARIYIMDEVMS 561
Query: 236 DVISN 240
I
Sbjct: 562 KAIEE 566
Score = 92.2 bits (227), Expect = 5e-17, Method: Composition-based stats.
Identities = 37/234 (15%), Positives = 74/234 (31%), Gaps = 27/234 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----HGWITAEYGML 66
R +++ V A G+ L+K+G+T +L+TAT +K + + G +
Sbjct: 34 RTLTVDIGRVCAQANGAALLKYGETTVLSTATASDKPRDGVDFFPLSVEYEEKMYAVGKI 93
Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
P R G+ + R+I R +R + I + +
Sbjct: 94 PGGFNKR------EGKASENAILTSRVIDRPMRPLFPKDYRNDVTINNMVMSVDPECRPE 147
Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
A+ G+ +A+ G A GM G I++ T D
Sbjct: 148 VVAMIGSALAV-------------TISDIPFAGPCAMTQMGMADGEFIINPSQKVWDTGD 194
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
+ T ++ ++ A ++ + D +I ++
Sbjct: 195 LQLTVASTAE-KVIMIEAGANE--IPEEKMIEAIYKCHDVNQTIIAFINHIVEE 245
>gi|257413916|ref|ZP_04744667.2| polyribonucleotide nucleotidyltransferase [Roseburia intestinalis
L1-82]
gi|257201810|gb|EEV00095.1| polyribonucleotide nucleotidyltransferase [Roseburia intestinalis
L1-82]
Length = 719
Score = 123 bits (308), Expect = 2e-26, Method: Composition-based stats.
Identities = 39/245 (15%), Positives = 76/245 (31%), Gaps = 18/245 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE-----EKVPMWIRNTKH 56
R GR NQ+R ++ + GS + G T + TL +K+ N
Sbjct: 334 RPDGRAINQIRPLAAEVDLIPRVHGSAMFTRGQTQICDVVTLAPLSEVQKIDGLDENITT 393
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
+Y S G R+ G +AL +V+ I
Sbjct: 394 KRYIHQYNFPAYSVGETKVSRGPGRREIGHGAL----AEKALMAVLPSEEEFPYAIRAVS 449
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+ +++G T A+ + ++L ++ V + D
Sbjct: 450 ETFESNGSTSMASTCASCMSLMAAGVPLKAMVAGISCGLV-------TGDTDDDYLVLTD 502
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI-KLQK 235
+ ED D+D T G I +Q + ++ + A++ ++ ++
Sbjct: 503 IQGLEDFFGDMDFKVTGTHKG-ITAIQMDIKIHGLTRPIVEEAIGRAREARIYIMDEVMS 561
Query: 236 DVISN 240
I
Sbjct: 562 KAIEE 566
Score = 92.2 bits (227), Expect = 5e-17, Method: Composition-based stats.
Identities = 37/234 (15%), Positives = 75/234 (32%), Gaps = 27/234 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----HGWITAEYGML 66
R +++ V A G+ L+K+G+T +L+TAT +K + + G +
Sbjct: 34 RTLTVDIGRVCAQANGAALLKYGETTVLSTATASDKPRDGVDFFPLSVEYEEKMYAVGKI 93
Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
P R G+ + R+I R +R + I + +
Sbjct: 94 PGGFNKR------EGKASENAILTSRVIDRPMRPLFPKDYRNDVTINNMVMSVDPECRPE 147
Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
A+ G+ +A+ G A GM+ G I++ T D
Sbjct: 148 VVAMIGSALAV-------------TISDIPFAGPCAMTQMGMVDGEFIINPSQKVWDTGD 194
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
+ T ++ ++ A ++ + D +I ++
Sbjct: 195 LQLTVASTAE-KVIMIEAGANE--IPEEKMIEAIYKCHDVNQTIIAFINHIVEE 245
>gi|321465387|gb|EFX76389.1| hypothetical protein DAPPUDRAFT_213979 [Daphnia pulex]
Length = 246
Score = 123 bits (308), Expect = 2e-26, Method: Composition-based stats.
Identities = 48/244 (19%), Positives = 92/244 (37%), Gaps = 21/244 (8%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIR--NTKHGW 58
+R+ GR+ N++R I + + A+GS ++ G+T +L ++ +
Sbjct: 12 LRIDGRKPNELRRIRCSLGIFSQADGSAYLEQGNTKVLAAVYGPHEIRGSKSKALHDKAF 71
Query: 59 ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDV 118
+ +Y S G R + R +S E+ + + + QI I +V
Sbjct: 72 VNCQYSTATFSMGERKR----RPRGDRKSTEMSTHLEETFAAAIRTELYPRSQIDIFVEV 127
Query: 119 IQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLD 178
+QADGG TA + A +AL D ++D S V + ++ G
Sbjct: 128 LQADGGNYTACVNAAMMALVDAGVPLKDTVVSCTASLVKDVPLVDVNHVERSGGSPE--- 184
Query: 179 YGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
++ SG IV + + F DH +L+ A D+ + +++
Sbjct: 185 ---------LVVSILPHSGEIVYMSLT---QRFHIDHLSKVLDTAIKGCKDIGAILNEIM 232
Query: 239 SNEV 242
+
Sbjct: 233 KGHL 236
>gi|261749590|ref|YP_003257276.1| polynucleotide phosphorylase/polyadenylase [Blattabacterium sp.
(Periplaneta americana) str. BPLAN]
gi|261497683|gb|ACX84133.1| polynucleotide phosphorylase/polyadenylase [Blattabacterium sp.
(Periplaneta americana) str. BPLAN]
Length = 710
Score = 123 bits (308), Expect = 2e-26, Method: Composition-based stats.
Identities = 49/243 (20%), Positives = 84/243 (34%), Gaps = 21/243 (8%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56
+RL GR+ Q+R I GS L G+T LTT T L+ +
Sbjct: 323 IRLDGRKSQQIRPIWSIVDYLPEVHGSALFSRGETQSLTTVTLGSSLDANKIDNVIMENQ 382
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P STG VS R+ G QR + + I +
Sbjct: 383 EKFYLHYNFPPFSTGEIRPIRGVSRREIGHGNLAQRALKNVIP------DNNPYTIRVVS 436
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
D+++++G + A + A +AL D +E+ + + I ++
Sbjct: 437 DILESNGSSSMATVCAASLALMDAGIAIENPVSGISMGLFTDKEKKVILSDIM------- 489
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSA-ERATFSQDHFFAMLNLAKDRIADLIKLQK 235
ED ++D T +G I Q + + D +L A + ++K
Sbjct: 490 --GEEDGFGELDFKITGTKNG-ITACQMDVKKIQGLTNDLLSQILMQALEGRLFILKKML 546
Query: 236 DVI 238
+ +
Sbjct: 547 ETL 549
Score = 100 bits (248), Expect = 2e-19, Method: Composition-based stats.
Identities = 41/233 (17%), Positives = 78/233 (33%), Gaps = 27/233 (11%)
Query: 13 EISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRN----TKHGWITAEYGMLP 67
I + +++ A+G+ +V+ +T LL T + +++ I + + G +P
Sbjct: 16 PIVIETGKIARQADGAAIVRAKNTILLATVVVSKEIKNEINFLPLTVDYREKYSASGKIP 75
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R GR R++ R LR S QI+I
Sbjct: 76 GGFIKR------EGRPSDEEILTMRLVDRVLRPTFSESFRNEIQIMISLLSYDKTVLPDE 129
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
A A AL G ++ I + G I++ + D+
Sbjct: 130 LAGLAASTALSVAGI-------------PFNGPISEIRIIRVNGKFIINPSLDQLEKADI 176
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
D I+ ++ E ++ F +N+A + I I+ QK ++
Sbjct: 177 DLIV-GASEHSIIMIE--GEMKEITEKEFLKAINIAHNAIKPQIEAQKKLVKK 226
>gi|195053730|ref|XP_001993779.1| GH21615 [Drosophila grimshawi]
gi|193895649|gb|EDV94515.1| GH21615 [Drosophila grimshawi]
Length = 760
Score = 123 bits (308), Expect = 2e-26, Method: Composition-based stats.
Identities = 45/248 (18%), Positives = 83/248 (33%), Gaps = 17/248 (6%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIR--------- 52
R GR + +R I+ + K GS L + G T + T +L+ +
Sbjct: 346 RCDGRDYDSLRNINCQVDMYKPLHGSALFQRGQTQVFCTVSLDSQESAMKLDTLAALESG 405
Query: 53 NTKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQI 112
K Y P +TG + + R+ G R L + +
Sbjct: 406 GLKAKNFMLHYEFPPYATGEVGRIGPLGRRELGHGAL----AERGLLPTLPHDYPF--TV 459
Query: 113 IIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY 172
+ +V++++G + A++ G +AL D + + + V K + +
Sbjct: 460 RLTSEVLESNGSSSMASVCGGSLALMDAGVPIIAPAAGVAIGLVTKYE-NEDTKHLQDYR 518
Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
+ D+ ED D+D T G +Q + L A D A ++
Sbjct: 519 ILTDILGIEDYMGDMDMKVAGTRKG-FTAIQADLKIPGIPLKVVMESLQKATDAKAKILD 577
Query: 233 LQKDVISN 240
+ D I
Sbjct: 578 IMADTIRE 585
Score = 84.9 bits (208), Expect = 8e-15, Method: Composition-based stats.
Identities = 31/225 (13%), Positives = 69/225 (30%), Gaps = 18/225 (8%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRST 70
R ++L+ ++++A G+ + + GDT ++ TA + K +
Sbjct: 41 RNMTLSSGKLARFANGTAVCQMGDTAVMVTAVAKAKATPGQNFMPLVVDYRQKNAASGRI 100
Query: 71 GNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAI 130
+ R R+I R+LR + Q++ + + A AI
Sbjct: 101 P--MNFMRRELGPSEREILSARLIDRSLRPLFPKDYRNETQLVCNMLAMDAVHSPDILAI 158
Query: 131 TGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDAN 190
A +A G + A+ G+ G +++ E + +D
Sbjct: 159 NAASMA-------------LSVSDIPWHGPIGAVRVGLCDGEVLINPTRRELQSSQLDLV 205
Query: 191 FVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
T +V ++ + + +I +
Sbjct: 206 VSATKQNLVVMLE--GKGNVVLMQDLLKAIKQGTREAQFIIHEIE 248
>gi|156936190|ref|YP_001440106.1| hypothetical protein ESA_04089 [Cronobacter sakazakii ATCC BAA-894]
gi|156534444|gb|ABU79270.1| hypothetical protein ESA_04089 [Cronobacter sakazakii ATCC BAA-894]
Length = 211
Score = 123 bits (308), Expect = 2e-26, Method: Composition-based stats.
Identities = 107/212 (50%), Positives = 143/212 (67%), Gaps = 2/212 (0%)
Query: 29 LVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQ 88
LV+FGDT +L TA++EE VP +++ GWITAEYGMLPR+T R REA G+QGGR+
Sbjct: 2 LVEFGDTKVLCTASIEEGVPRFLKGQGQGWITAEYGMLPRATHTRNAREAAKGKQGGRTL 61
Query: 89 EIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCS 148
EIQR+I R+LR+ VDL ALG I +DCDVIQADGGTRTA+ITGA VAL D L +
Sbjct: 62 EIQRLIARSLRAAVDLKALGEFTITLDCDVIQADGGTRTASITGACVALADALNALVAA- 120
Query: 149 NKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAER 208
+ +KG VAA+S G++ G + DL+Y EDS + D N VMT+ G ++EVQG+AE
Sbjct: 121 -GKLKTNPMKGMVAAVSVGIVNGEAVCDLEYVEDSAAETDMNVVMTEDGRMIEVQGTAEG 179
Query: 209 ATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
F+ + +L LA+ I ++ QK ++N
Sbjct: 180 EPFTHEELLDLLALARGGIESIVASQKAALAN 211
>gi|238916832|ref|YP_002930349.1| polyribonucleotide nucleotidyltransferase [Eubacterium eligens ATCC
27750]
gi|238872192|gb|ACR71902.1| polyribonucleotide nucleotidyltransferase [Eubacterium eligens ATCC
27750]
Length = 723
Score = 123 bits (308), Expect = 2e-26, Method: Composition-based stats.
Identities = 40/245 (16%), Positives = 73/245 (29%), Gaps = 18/245 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL-----EEKVPMWIRNTKH 56
R GR NQ+R ++ + GS + G T + TL +KV N
Sbjct: 341 RPDGRAINQIRPLAAEVDIIPRVHGSAMFTRGQTQICDVVTLAPLSEAQKVDGLDENVTT 400
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y S G R+ G +AL V+ I
Sbjct: 401 KRYIHHYNFPSYSVGETKPSRGPGRREIGHGAL----AEKALVPVLPSEEEFPYAIRAVS 456
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+ +++G T A+ + ++L ++ V + D
Sbjct: 457 ETFESNGSTSMASTCASCMSLMAAGVPIKRMVAGISCGLV-------TGETDDDYIVLTD 509
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL-QK 235
+ ED D+D T G I +Q + ++ + ++ ++ K
Sbjct: 510 IQGLEDFFGDMDFKVTGTTEG-ITAIQMDIKIHGLTRPIVEEAIRRTREARLFIMDTCMK 568
Query: 236 DVISN 240
I+
Sbjct: 569 PAIAE 573
Score = 91.1 bits (224), Expect = 1e-16, Method: Composition-based stats.
Identities = 38/234 (16%), Positives = 74/234 (31%), Gaps = 27/234 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----HGWITAEYGML 66
R + + V A G+ L+ +GDT +L+TAT ++ I + G +
Sbjct: 41 RTLRVDIGRVCAQANGAALMHYGDTVVLSTATASKEPREGIDFFPLSVEYEEKMYAAGKI 100
Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
P R G+ + R+I R +R + + + +
Sbjct: 101 PGGFNKR------EGKASENAILTSRVIDRPMRPLFPKDYRNDVTLNNMVMSVDENCRPE 154
Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
A+ G+ +A G A GM+ G IV+ + D
Sbjct: 155 LLAMIGSAIAT-------------SISDIPFDGPCATTQIGMIDGEFIVNPSQAQWQDGD 201
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
+ T ++ ++ A +D + A D +I +++
Sbjct: 202 LQLTVASTKQ-KVIMIEAGANE--IPEDKMIEAIYKAHDINQTIIAFIDKIVAE 252
>gi|171912768|ref|ZP_02928238.1| polynucleotide phosphorylase/polyadenylase [Verrucomicrobium
spinosum DSM 4136]
Length = 707
Score = 123 bits (308), Expect = 2e-26, Method: Composition-based stats.
Identities = 45/243 (18%), Positives = 88/243 (36%), Gaps = 13/243 (5%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL-----EEKVPMWIRNTKH 56
R GR +Q+R +S + + GS L G+T L ATL +++ +
Sbjct: 314 RADGRGIDQLRPLSGETGLIPRSHGSALFARGETQALALATLAPLDEAQEMDNYAGGETT 373
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P S G + + R+ G R++ VV S + +
Sbjct: 374 KRFILHYNFPPFSVGETGRFGGQNRREIGHGAL----AERSVEPVVPSSEDFPYAMRVSS 429
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+V++++G T A++ +AL D ++ + V + M ++D
Sbjct: 430 EVMESNGSTSMASVCSGVMALLDAGVPLKRPVAGISVGLVSEYDAN---NQMSRYLTMLD 486
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T+ G + Q + + A +++++ K
Sbjct: 487 IIGSEDHFGDMDFKLCGTELG-VTGFQLDLKLPGIPLSILNEAIAKAVTGRTNILEVMKS 545
Query: 237 VIS 239
I+
Sbjct: 546 AIA 548
Score = 98.4 bits (243), Expect = 7e-19, Method: Composition-based stats.
Identities = 45/229 (19%), Positives = 88/229 (38%), Gaps = 27/229 (11%)
Query: 13 EISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGMLP 67
+I+ ++K A+G+ V+ GDT ++ TA ++E + + ++ A G P
Sbjct: 14 DITFETGKLAKLADGAVTVRQGDTIVIVTAVSATKVKEGQDFFPLSVEYKEKAAAAGKFP 73
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R GR + RM R LR + QI+ +
Sbjct: 74 GGYFKR------EGRPTEKEILTCRMTDRPLRPLFPKGYYYDTQIVALLLSADGENDADI 127
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
+I GA AL G V A+ G + G +++ + + + D+
Sbjct: 128 ISINGASAALC-------------VSDIPFAGPVGAVRVGRVNGQFVLNPTHSQRAKSDL 174
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
D +V S ++ ++G+A + F L A++ + L+ +Q++
Sbjct: 175 DLVYVGNKS-EVIMIEGAANE--LPEAEFIKALAFAQEHVQVLVAVQEE 220
>gi|163814157|ref|ZP_02205549.1| hypothetical protein COPEUT_00311 [Coprococcus eutactus ATCC 27759]
gi|158450606|gb|EDP27601.1| hypothetical protein COPEUT_00311 [Coprococcus eutactus ATCC 27759]
Length = 731
Score = 123 bits (308), Expect = 2e-26, Method: Composition-based stats.
Identities = 40/240 (16%), Positives = 73/240 (30%), Gaps = 10/240 (4%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL-EEKVPMWIRNTKHGWIT 60
R GR NQ+R ++ + GS + G T + TL + T
Sbjct: 348 RPDGRAINQIRPLAAEVDIIPRVHGSAMFTRGQTQICNVCTLAPLSEIQRVDGLDENVTT 407
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
Y V VS G R + RAL V+ I + +
Sbjct: 408 KRYMHHYNFPAYSVGETKVSRGPGRREIGHGALAERALLPVLPSEEEFPYAIRTVSETFE 467
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
++G T A+ + ++L ++ V + D+
Sbjct: 468 SNGSTSMASTCSSCMSLMAAGVPIKAMVAGISCGLV-------TGDTDDDYIVLTDIQGL 520
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL-QKDVIS 239
ED D+D T G I +Q + ++ + ++ +++ K I+
Sbjct: 521 EDFFGDMDFKVTGTTEG-ITAIQMDIKIHGLTRPIVEEAIARTREARLFIMETCMKPAIA 579
Score = 91.8 bits (226), Expect = 6e-17, Method: Composition-based stats.
Identities = 37/234 (15%), Positives = 77/234 (32%), Gaps = 27/234 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----HGWITAEYGML 66
R +++ V+ A G+ +K+GDT +L+T T EK I + G +
Sbjct: 48 RMLTVDIGRVAAQANGAAFIKYGDTTVLSTCTASEKPRDGIDFFPLSVEYEEKLYSVGKI 107
Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
P R G+ + R+I R +R + + + +
Sbjct: 108 PGGFNKR------EGKASENAVLTSRVIDRPMRPLFPKDYRNDVTLNNLVMSVDPECRPE 161
Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
A+ G+ +A G A G++ G I++ + D
Sbjct: 162 LVAMLGSSIATC-------------ISDVPFDGPCAMTQVGLIDGEFIINPTQKQWDEGD 208
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
+ T ++ ++ A + + +A D D+I ++++
Sbjct: 209 LKLTVASTSQ-KVIMIEAGANIVP--EAKMIEAIYMAHDINQDIIAFINEIVAE 259
>gi|291536078|emb|CBL09190.1| polyribonucleotide nucleotidyltransferase [Roseburia intestinalis
M50/1]
Length = 697
Score = 123 bits (308), Expect = 2e-26, Method: Composition-based stats.
Identities = 39/245 (15%), Positives = 76/245 (31%), Gaps = 18/245 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE-----EKVPMWIRNTKH 56
R GR NQ+R ++ + GS + G T + TL +K+ N
Sbjct: 312 RPDGRAINQIRPLAAEVDLIPRVHGSAMFTRGQTQICDVVTLAPLSEVQKIDGLDENITT 371
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
+Y S G R+ G +AL +V+ I
Sbjct: 372 KRYIHQYNFPAYSVGETKVSRGPGRREIGHGAL----AEKALMAVLPSEEEFPYAIRAVS 427
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+ +++G T A+ + ++L ++ V + D
Sbjct: 428 ETFESNGSTSMASTCASCMSLMAAGVPLKAMVAGISCGLV-------TGDTDDDYLVLTD 480
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI-KLQK 235
+ ED D+D T G I +Q + ++ + A++ ++ ++
Sbjct: 481 IQGLEDFFGDMDFKVTGTHKG-ITAIQMDIKIHGLTRPIVEEAIGRAREARIYIMDEVMS 539
Query: 236 DVISN 240
I
Sbjct: 540 KAIEE 544
Score = 92.2 bits (227), Expect = 6e-17, Method: Composition-based stats.
Identities = 37/234 (15%), Positives = 75/234 (32%), Gaps = 27/234 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----HGWITAEYGML 66
R +++ V A G+ L+K+G+T +L+TAT +K + + G +
Sbjct: 12 RTLTVDIGRVCAQANGAALLKYGETTVLSTATASDKPRDGVDFFPLSVEYEEKMYAVGKI 71
Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
P R G+ + R+I R +R + I + +
Sbjct: 72 PGGFNKR------EGKASENAILTSRVIDRPMRPLFPKDYRNDVTINNMVMSVDPECRPE 125
Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
A+ G+ +A+ G A GM+ G I++ T D
Sbjct: 126 VVAMIGSALAV-------------TISDIPFAGPCAMTQMGMVDGEFIINPSQKVWDTGD 172
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
+ T ++ ++ A ++ + D +I ++
Sbjct: 173 LQLTVASTAE-KVIMIEAGANE--IPEEKMIEAIYKCHDVNQTIIAFINHIVEE 223
>gi|307105973|gb|EFN54220.1| hypothetical protein CHLNCDRAFT_36088 [Chlorella variabilis]
Length = 852
Score = 123 bits (307), Expect = 3e-26, Method: Composition-based stats.
Identities = 40/246 (16%), Positives = 74/246 (30%), Gaps = 18/246 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW-----IRNTKH 56
R GR +R + GS L G+T L T T+ + +
Sbjct: 449 RCDGRGAIDVRPVHCEVDSVPVVHGSALFSRGETQSLCTVTVGRRQEQQKMESLLGGEGV 508
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
+ Y P + G + RAL V+ + ++
Sbjct: 509 KRLFVNYSFPPFAVGETSTSGMRRE------MGHSDLAERALLPVIPDMQAFPFSLRLNA 562
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+ + + G + AA+ G +AL D ++ + + + S G
Sbjct: 563 ETLASAGSSSMAAVCGGALALADAGVPLKALVAGVTVGLLTE-----SSWGGELRLLSSV 617
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAE-RATFSQDHFFAMLNLAKDRIADLIKLQK 235
ED D+D T G I Q + + + + LA A L+ + +
Sbjct: 618 ALGMEDQLGDMDLKVAGTSQG-ITACQLDVKLQGGVPLEILNEAIGLAARGRAKLLGIME 676
Query: 236 DVISNE 241
+ +
Sbjct: 677 KALPEK 682
Score = 84.9 bits (208), Expect = 9e-15, Method: Composition-based stats.
Identities = 42/229 (18%), Positives = 68/229 (29%), Gaps = 20/229 (8%)
Query: 16 LTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGNRV 74
+++ A GSCLV+ G+T +L AT ++P W R R+
Sbjct: 134 FETGKLARLANGSCLVQCGNTTVLAAATC--QLPPWSRREAQSLQFEVDYREKLYAVGRI 191
Query: 75 KREAVSGRQG--GRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITG 132
R IGRALR + + A++
Sbjct: 192 PGTYNKREGTAKEHEVLAGRRIGRALRPLFPKGFALDAAVFASVLSADGGCDPEVMAVSS 251
Query: 133 AWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFV 192
A AL AA + G +V + +D
Sbjct: 252 ASAALLCSDMPWAGPV------------AAARVAMLHDGQLVVGPSVEQQEAAVLDLLVA 299
Query: 193 MTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
T G + ++ E+ + F L+LA LIK Q ++ +
Sbjct: 300 ATADGRVTMLEADGEQVP--ETQFLNALHLAVSTTQQLIKPQMQ-LAEQ 345
>gi|291523665|emb|CBK81958.1| polyribonucleotide nucleotidyltransferase [Coprococcus catus GD/7]
Length = 697
Score = 123 bits (307), Expect = 3e-26, Method: Composition-based stats.
Identities = 42/245 (17%), Positives = 75/245 (30%), Gaps = 18/245 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL-----EEKVPMWIRNTKH 56
R GR +Q+R ++ + GS + G T + T TL +KV
Sbjct: 315 RPDGRAIDQIRPLAAEIDLFARTHGSAMFTRGQTQICTITTLAPLSDAQKVDGLNEFVTS 374
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y S G R+ G RAL V+ I
Sbjct: 375 KRYMHHYNFPSYSVGETKPSRGPGRREIGHGAL----AERALVPVLPSEEEFPYAIRTVS 430
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+ +++G T A+I + ++L ++ V + D
Sbjct: 431 ETFESNGSTSQASICASTMSLMAAGVPIKKPVAGISCGLV-------TGDTDDDYLVLTD 483
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI-KLQK 235
+ ED D+D T G I +Q + ++ + K ++ ++ +
Sbjct: 484 IQGLEDFFGDMDFKVAGTHDG-ITAIQMDIKIHGLTRPIVEEAIRRTKQAREYILTEIIE 542
Query: 236 DVISN 240
IS
Sbjct: 543 PCISE 547
Score = 101 bits (250), Expect = 1e-19, Method: Composition-based stats.
Identities = 41/234 (17%), Positives = 76/234 (32%), Gaps = 27/234 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----HGWITAEYGML 66
R + + V+ A G+ L+ +GDT +L+TAT EK I G +
Sbjct: 15 RTLRVEVGHVAAQANGAALMYYGDTCVLSTATASEKPRDGIDFFPLSVEFEEKMYSVGKI 74
Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
P R G+ + R+I R +R + + +
Sbjct: 75 PGGFNKR------EGKASENAVLTARVIDRPMRPLFPKDYRNDVTLNNLVLCVDQTCSPE 128
Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
A+ G+ +A G A GM+ G I++ + S D
Sbjct: 129 LTAMLGSAIATC-------------ISDIPFDGPCAMTQVGMINGEFIINPSNEQKSVSD 175
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
+ T ++ ++ A +D + A D ++IK +++
Sbjct: 176 LALTVASTRE-KVIMIEAGANEVP--EDKMIEAIYAAHDVNQEIIKFIDQIVAE 226
>gi|218133599|ref|ZP_03462403.1| hypothetical protein BACPEC_01468 [Bacteroides pectinophilus ATCC
43243]
gi|217990974|gb|EEC56980.1| hypothetical protein BACPEC_01468 [Bacteroides pectinophilus ATCC
43243]
Length = 742
Score = 123 bits (307), Expect = 3e-26, Method: Composition-based stats.
Identities = 40/245 (16%), Positives = 72/245 (29%), Gaps = 18/245 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL-----EEKVPMWIRNTKH 56
R GR Q+R ++ + GS + G T + TL +KV N
Sbjct: 358 RPDGRAITQIRPLAAEIDLIPRVHGSAMFTRGQTQICDVVTLAPLSEAQKVDGLDENVTA 417
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y S G R+ G RAL V+ I
Sbjct: 418 KRYIHHYNFPSYSVGETKPSRGPGRREIGHGAL----AERALIPVLPSEEEFPYAIRAVS 473
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+ +++G T A+ + ++L ++ V + D
Sbjct: 474 ETFESNGSTSMASTCASCMSLMAAGVPIKRMVAGISCGLV-------TGDTDDDYIVLTD 526
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL-QK 235
+ ED D+D T G I +Q + ++ + ++ ++ K
Sbjct: 527 IQGLEDFFGDMDFKVTGTTEG-ITAIQMDIKIHGLTRPIVEEAIARTREARLFIMDTCMK 585
Query: 236 DVISN 240
I+
Sbjct: 586 PAIAE 590
Score = 93.0 bits (229), Expect = 3e-17, Method: Composition-based stats.
Identities = 35/234 (14%), Positives = 74/234 (31%), Gaps = 27/234 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----HGWITAEYGML 66
R +++ V A G+ L+ +GDT +L+TAT ++ I + G +
Sbjct: 58 RTLTVDVGRVCAQANGAALMHYGDTVVLSTATASKEPREGIDFFPLSVEYEEKLYAVGKI 117
Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
P R G+ + R+I R +R + + + +
Sbjct: 118 PGGFNKR------EGKASENAILTSRVIDRPMRPLFPKDYRNDVTLNNMVMSVDPECRPE 171
Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
A+ GA +A G A GM+ G +V+ + D
Sbjct: 172 LVAMLGASIATC-------------ISDIPFDGPCAMTQLGMIDGEFVVNPSQEQWKNGD 218
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
+ T ++ ++ A + + + +I+ +++
Sbjct: 219 LRLTVASTSQ-KVIMIECGANEVP--EARMIEAIYKCHEVNQTIIEFINKIVAE 269
>gi|291233253|ref|XP_002736568.1| PREDICTED: exosome component 4-like [Saccoglossus kowalevskii]
Length = 246
Score = 122 bits (306), Expect = 4e-26, Method: Composition-based stats.
Identities = 54/245 (22%), Positives = 92/245 (37%), Gaps = 23/245 (9%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVP--MWIRNTKHGW 58
R GR+ +++R+I V + A+GS ++ G+T +L T ++
Sbjct: 12 FRADGRRPHELRKIRCRMGVFRQADGSAYIEQGNTKVLATVYGPHEITGGRSKALHDKVL 71
Query: 59 ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDV 118
+ +Y M STG R R R SQE+ + R ++ + QI I V
Sbjct: 72 LNCQYSMATFSTGERKTRPKGDRR----SQEMSMNLRRTFQAAILTHLYPRSQIDIYVQV 127
Query: 119 IQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLD 178
+Q+DGG A + A +A+ D M D S + V IS
Sbjct: 128 LQSDGGNYCACVNAATLAVIDAGIPMRDYVCACTSSLLEDTPVVDIS------------- 174
Query: 179 YGEDSTIDVDANFV-MTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
Y E+S + + S IV Q ++ D+ +L++ D+ +
Sbjct: 175 YLEESVGSPEMVVALLPKSEQIVLFQQNSR---LHVDNLEKVLDMGIKGCTDVYGILDQS 231
Query: 238 ISNEV 242
+ V
Sbjct: 232 VREHV 236
>gi|293115582|ref|ZP_05792154.2| polyribonucleotide nucleotidyltransferase [Butyrivibrio crossotus
DSM 2876]
gi|292808925|gb|EFF68130.1| polyribonucleotide nucleotidyltransferase [Butyrivibrio crossotus
DSM 2876]
Length = 705
Score = 122 bits (306), Expect = 4e-26, Method: Composition-based stats.
Identities = 37/245 (15%), Positives = 71/245 (28%), Gaps = 18/245 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL-----EEKVPMWIRNTKH 56
R GR+ Q+R ++ + GS + G T + TL +K+
Sbjct: 319 RPDGREITQIRPLAAEVDIIPRVHGSAMFTRGQTQICNVCTLAPLSDAQKIDGLNDQETS 378
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y S G R+ G RAL V+ I
Sbjct: 379 KRYMHHYNFPAYSVGETKVSRGPGRREIGHGAL----AERALIPVLPSVEEFPYAIRTVS 434
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+ +++G T A+ + ++L ++ V + D
Sbjct: 435 ETFESNGSTSMASTCASCMSLMAAGVPIKKMVAGISCGLV-------TGETDDDFVLLTD 487
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK-LQK 235
+ ED D+D T G I +Q + ++ + ++ ++
Sbjct: 488 IQGLEDFFGDMDFKVTGTKDG-ITAIQMDIKIHGLTRQIVEGAIARCREARFFIMDNCMS 546
Query: 236 DVISN 240
I+
Sbjct: 547 KAIAE 551
Score = 95.7 bits (236), Expect = 5e-18, Method: Composition-based stats.
Identities = 36/234 (15%), Positives = 77/234 (32%), Gaps = 27/234 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----HGWITAEYGML 66
R +++ V+K A G+ + +GDT +L+TAT EK + + G +
Sbjct: 19 RTLTVDVDRVAKQANGAAFMHYGDTVVLSTATASEKPRDGVDFFPLSVEYEEKLYAVGKI 78
Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
P R G+ + R+I R +R + I + D
Sbjct: 79 PGGFNKR------EGKASENAILTSRVIDRPMRPLFPKDYRNDVTINNLVMSVDPDCSPE 132
Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
A+ G+ +++ G A GM+ G +++ + + D
Sbjct: 133 LTAMLGSAISV-------------AISDIPFDGPCATTQVGMIDGEFVINPSGSQMAVSD 179
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
+ T ++ ++ A + + A + +I +++
Sbjct: 180 LKLTVASTRE-KVIMIEAGANE--IPEARMIEAIYKAHEVNQQIIAFIDKIVAE 230
>gi|238924296|ref|YP_002937812.1| polyribonucleotide nucleotidyltransferase [Eubacterium rectale ATCC
33656]
gi|238875971|gb|ACR75678.1| polyribonucleotide nucleotidyltransferase [Eubacterium rectale ATCC
33656]
Length = 718
Score = 122 bits (306), Expect = 4e-26, Method: Composition-based stats.
Identities = 39/241 (16%), Positives = 73/241 (30%), Gaps = 10/241 (4%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL-EEKVPMWIRNTKHGWIT 60
R GR NQ+R ++ + GS + G T + TL I T
Sbjct: 334 RPDGRAINQIRPLAAEVDLIPRVHGSAMFTRGQTQICDVVTLAPLSEIQKIDGLDANITT 393
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
Y V VS G R + +AL V+ I + +
Sbjct: 394 KRYMHHYNFPAYSVGETKVSRGPGRREIGHGALAEKALVPVLPSIEEFPYTIRAVSETFE 453
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
++G T A+ + ++L ++ V + D+
Sbjct: 454 SNGSTSMASTCASCMSLMAAGVPIKAMVAGISCGLV-------TGDTDDDFLVLTDIQGL 506
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI-KLQKDVIS 239
ED D+D T G I +Q + ++ + ++ ++ ++ I+
Sbjct: 507 EDFFGDMDFKVTGTHKG-ITAIQMDIKIHGLTRPIVEEAIARTREARLYIMDEVMSKAIA 565
Query: 240 N 240
Sbjct: 566 E 566
Score = 93.4 bits (230), Expect = 2e-17, Method: Composition-based stats.
Identities = 39/236 (16%), Positives = 76/236 (32%), Gaps = 28/236 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----HGWITAEYGML 66
R +++ V+ A G+ +K+GDT +L+TAT +K + G +
Sbjct: 34 RTLTVDIGRVAAQANGAVFIKYGDTTVLSTATASDKPRDGVDFFPLSVEFEEKMYSVGKI 93
Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
P R G+ + R+I R +R + + + +
Sbjct: 94 PGGFNKR------EGKASENAILTDRVIDRPMRPLFPKDYRNDVTLNNLVMSVDPECRPE 147
Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
A+ G +A+H G A G++ G IV+ + D
Sbjct: 148 IVAMIGTALAVH-------------ISDIPFDGPCAMTQMGLVDGEFIVNPSQKQWDEGD 194
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNEV 242
+ T ++ ++ A +D + D +I I +E+
Sbjct: 195 LQLTVASTKE-KVIMIEAGANE--IPEDQMIEAIYKCHDINQTVIAFMDQ-IRDEI 246
>gi|195622232|gb|ACG32946.1| exosome complex exonuclease RRP41 [Zea mays]
Length = 242
Score = 122 bits (306), Expect = 4e-26, Method: Composition-based stats.
Identities = 64/243 (26%), Positives = 106/243 (43%), Gaps = 23/243 (9%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKV--PMWIRNTKHGW 58
R+ GR+ N+MR++ V A+GS L + G+T ++ +V N+K
Sbjct: 10 FRVDGRRPNEMRQLKGEVGVVVRADGSALFEMGNTRVIAAVYGPREVQNKGQQVNSKEAL 69
Query: 59 ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDV 118
+ EY M STG+R ++ R I +I + + + + + QI I V
Sbjct: 70 VRCEYRMAEFSTGDRRRKPKGDRRSTE----ISLVIRQTMEASILTHLMPHSQIDIYVQV 125
Query: 119 IQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLD 178
+QADGGTR+A I A +AL D M D + + S G LC P++DL+
Sbjct: 126 LQADGGTRSACINAATLALADAGIPMRDIAT-------------SCSAGYLCSTPLLDLN 172
Query: 179 YGEDSTIDVDANF-VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
Y EDS D ++ + +Q A+ D F ++ LA + + ++V
Sbjct: 173 YLEDSAGGSDVTVGILAKMDKVTLLQMDAK---LPIDTFENVMGLAIEGCKAIATYIREV 229
Query: 238 ISN 240
+
Sbjct: 230 LLE 232
>gi|288930698|ref|YP_003434758.1| 3' exoribonuclease [Ferroglobus placidus DSM 10642]
gi|288892946|gb|ADC64483.1| 3' exoribonuclease [Ferroglobus placidus DSM 10642]
Length = 259
Score = 122 bits (306), Expect = 4e-26, Method: Composition-based stats.
Identities = 52/244 (21%), Positives = 94/244 (38%), Gaps = 15/244 (6%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R+ GR+ +++R+I + V + AEGS LVK G+T +L ++ P + G I
Sbjct: 23 RIDGRKFDEIRKIEIQTGVIEKAEGSALVKLGNTQVLVGVKMQPGEP-FPDAPNKGIIIT 81
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGR------ALRSVVDLSALGS--RQII 113
++P ++ G + E+ R++ R A+ G I
Sbjct: 82 NAELVPLASPTFEP-----GPPDENAIELARVVDRGIRESEAVDLEKLCIEEGEKVWLIF 136
Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP 173
ID + DG A+ GA AL + E ++ AI+ ++
Sbjct: 137 IDIWALDDDGNLLDASALGAIAALLNTTVPAERFEVGDDFPLPVRDLPVAITSLIVENKI 196
Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
+VD E S +IV +Q S ++ F+ + L+ + ++ KL
Sbjct: 197 LVDPIKDETSVAKNFLTITTDSEDNIVAIQKSG-SYLLPEEKFYEAIELSIRKAREVRKL 255
Query: 234 QKDV 237
+V
Sbjct: 256 LAEV 259
>gi|87125085|ref|ZP_01080932.1| ribonuclease PH [Synechococcus sp. RS9917]
gi|86167405|gb|EAQ68665.1| ribonuclease PH [Synechococcus sp. RS9917]
Length = 220
Score = 122 bits (306), Expect = 4e-26, Method: Composition-based stats.
Identities = 94/216 (43%), Positives = 134/216 (62%), Gaps = 4/216 (1%)
Query: 24 AEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGNRVKREAVSGRQ 83
A S LV+ G T +L + E VP W + GW++AEY +LP ST R KR +
Sbjct: 4 ALSSVLVRSGRTAVLCSIGHEAGVPRWRMGSGKGWLSAEYRLLPGSTPERQKR--ELLKL 61
Query: 84 GGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVALHDCLQH 143
GR+QEIQR+IGR+LR+ +D+ ALG +++DCDVIQAD GTRTAAITGAWVAL +
Sbjct: 62 SGRTQEIQRLIGRSLRACLDMEALGENTLLVDCDVIQADAGTRTAAITGAWVALQRACER 121
Query: 144 MEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQ 203
+ ++ VAA+S G++ G ++DL+Y EDS DVD N VM SG ++E+Q
Sbjct: 122 LVKR--GDLSHNPVRDQVAAVSVGLIGGEALLDLNYSEDSQADVDLNVVMDGSGRLLELQ 179
Query: 204 GSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
G+AE A FS+ +L+LA+ + L+ Q+ ++
Sbjct: 180 GTAEGAPFSRSELTRLLDLAEPGLTALMAAQQRALA 215
>gi|83318937|emb|CAJ38806.1| polynucleotide phosphorylase protein [Platynereis dumerilii]
Length = 628
Score = 122 bits (306), Expect = 4e-26, Method: Composition-based stats.
Identities = 43/250 (17%), Positives = 87/250 (34%), Gaps = 16/250 (6%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE--------EKVPMWIR 52
+R GR+ N++R I+ + GS + + G T +L T T + + + +
Sbjct: 302 LRCDGRRLNEIRPINCGVDLFSPLHGSAMFQRGQTQVLCTVTFDSLDSAAKVDAITALMA 361
Query: 53 NTKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQI 112
K Y P +T + R+ G +AL++V+ I
Sbjct: 362 GMKEKNFFVHYEFPPYATNETGRTGFAGRRELGHGAL----AEKALKNVIPSDFPF--TI 415
Query: 113 IIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCG-MLCG 171
+ +V++++G + A + G +AL D K + G +
Sbjct: 416 RLSAEVLESNGSSSMATVCGGSLALMDAGSSKLRPKGSSLGVACGKWLTRSDDHGNVSDF 475
Query: 172 YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231
+ DL ED D+D + T G + +Q + A + +++
Sbjct: 476 KVLTDLLGIEDYMGDMDFKYAGTSKG-VTALQADVKVPGLPLKVIMEAEERAWEGKTEIL 534
Query: 232 KLQKDVISNE 241
+ + +S
Sbjct: 535 SIMWNCLSQH 544
Score = 76.8 bits (187), Expect = 2e-12, Method: Composition-based stats.
Identities = 42/227 (18%), Positives = 73/227 (32%), Gaps = 24/227 (10%)
Query: 13 EISLTRR-VSKYAEGSCLVKFGDTHLLTTAT--LEEKVPMWIRNTKHGWITAEYGMLPRS 69
++L +++A+GS KFG+T +L TA + + A G +P +
Sbjct: 1 NLTLNTGQSARFADGSITGKFGNTSVLVTAVSKGKSTNNFLPLMVDYRQKAAAAGRIPTN 60
Query: 70 TGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAA 129
R + RMI R+LR + QI+ + + +
Sbjct: 61 HLRR------ELGPSDKETLTSRMIDRSLRPLFPSGYFVDTQIVCNLLAVDGQNDPDIVS 114
Query: 130 ITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDA 189
I A A G V A+ G + +++ E + D
Sbjct: 115 INAASAA-------------LAVSDIPRFGPVGAVRVGFVDNEIVINPTRREMAHSTXDL 161
Query: 190 NFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
D +V ++ SA SQ +F + +I KD
Sbjct: 162 VVSAADQNKVVMLEASA--DGISQPNFRHAIKRGVKESQKIITAIKD 206
>gi|225454436|ref|XP_002280302.1| PREDICTED: hypothetical protein [Vitis vinifera]
gi|147867252|emb|CAN81194.1| hypothetical protein VITISV_022853 [Vitis vinifera]
gi|297745390|emb|CBI40470.3| unnamed protein product [Vitis vinifera]
Length = 241
Score = 122 bits (305), Expect = 4e-26, Method: Composition-based stats.
Identities = 61/242 (25%), Positives = 103/242 (42%), Gaps = 22/242 (9%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVP-MWIRNTKHGWI 59
+RL GR+ +MR+I A+GS + G+T ++ +V + + +
Sbjct: 9 LRLDGRRPMEMRQIRGEIGAVAKADGSAFFEMGNTKVIAAVYGPREVENRSQQISDQALV 68
Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119
EY M STG+R+++ R I +I + + + + + QI I V+
Sbjct: 69 RCEYTMANFSTGDRMRKPKGDRRSTE----ISLVIRQTMEACILTHLMPRSQIDIFVQVL 124
Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179
QADGGTR+A I A +AL D M D V + S G L P++DL+Y
Sbjct: 125 QADGGTRSACINAATLALADAGIPMRDL-------------VTSCSAGYLNSTPLLDLNY 171
Query: 180 GEDSTIDVDANF-VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
EDS D ++ + +Q A+ D F ++ LA + + ++V+
Sbjct: 172 VEDSAGGPDVTVGILPKLDKVTLLQMDAK---LPMDIFENVMQLAIEGCKAIANYIREVL 228
Query: 239 SN 240
Sbjct: 229 LE 230
>gi|195112939|ref|XP_002001029.1| GI10566 [Drosophila mojavensis]
gi|193917623|gb|EDW16490.1| GI10566 [Drosophila mojavensis]
Length = 770
Score = 122 bits (305), Expect = 5e-26, Method: Composition-based stats.
Identities = 43/248 (17%), Positives = 83/248 (33%), Gaps = 17/248 (6%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIR--------- 52
R GR + +R+I+ + K GS L + G T + T +L+
Sbjct: 353 RCDGRDYDSLRKINCQVDMYKPLHGSALFQRGQTQVFCTVSLDSPESAMKLDTLAALDSG 412
Query: 53 NTKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQI 112
K Y P +TG + + R+ G R+L + +
Sbjct: 413 GLKAKNFMLHYEFPPYATGEVGRIGPLGRRELGHGAL----AERSLLPTLPNDYPF--TV 466
Query: 113 IIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY 172
+ +V++++G + A++ G +AL D + + + V K +
Sbjct: 467 RLTSEVLESNGSSSMASVCGGSLALMDAGVPITAPAAGVAIGLVTKYENNDTKH-LQDYR 525
Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
+ D+ ED D+D T G +Q + L A D + ++
Sbjct: 526 ILTDILGIEDYMGDMDMKVAGTRKG-FTAIQADLKIPGIPLKVVMESLQKATDAKSKILD 584
Query: 233 LQKDVISN 240
+ + I
Sbjct: 585 IMGETIRE 592
Score = 84.9 bits (208), Expect = 9e-15, Method: Composition-based stats.
Identities = 29/225 (12%), Positives = 69/225 (30%), Gaps = 18/225 (8%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRST 70
R+++++ ++++A G+ + + GDT ++ TA + K
Sbjct: 48 RKMTISSGKLARFANGTAVCQMGDTAVMVTAVAKAKPTPGQNFMPLVVDYRLKNAASGRI 107
Query: 71 GNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAI 130
+ + R+I R+LR + Q++ + + A AI
Sbjct: 108 P--MNFMRRELGPSEKEILSARLIDRSLRPLFAKDYRNETQLVCNMLAMDAVHSPDVLAI 165
Query: 131 TGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDAN 190
A +A G + A+ G+ G +++ E + +D
Sbjct: 166 NAASMA-------------LSLSDIPWNGPIGAVRVGLSDGEVLINPTRRELQSSQLDLV 212
Query: 191 FVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
T +V ++ + + +I +
Sbjct: 213 VSATKQNLVVMLE--GKGNVVLMQDLLKAIKQGTREAQFIIHEIE 255
>gi|291525068|emb|CBK90655.1| polyribonucleotide nucleotidyltransferase [Eubacterium rectale DSM
17629]
Length = 696
Score = 122 bits (305), Expect = 5e-26, Method: Composition-based stats.
Identities = 39/241 (16%), Positives = 73/241 (30%), Gaps = 10/241 (4%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL-EEKVPMWIRNTKHGWIT 60
R GR NQ+R ++ + GS + G T + TL I T
Sbjct: 312 RPDGRAINQIRPLAAEVDLIPRVHGSAMFTRGQTQICDVVTLAPLSEIQKIDGLDANITT 371
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
Y V VS G R + +AL V+ I + +
Sbjct: 372 KRYMHHYNFPAYSVGETKVSRGPGRREIGHGALAEKALVPVLPSVEEFPYTIRAVSETFE 431
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
++G T A+ + ++L ++ V + D+
Sbjct: 432 SNGSTSMASTCASCMSLMAAGVPIKAMVAGISCGLV-------TGDTDDDFLVLTDIQGL 484
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI-KLQKDVIS 239
ED D+D T G I +Q + ++ + ++ ++ ++ I+
Sbjct: 485 EDFFGDMDFKVTGTHKG-ITAIQMDIKIHGLTRPIVEEAIARTREARLYIMDEVMSKAIA 543
Query: 240 N 240
Sbjct: 544 E 544
Score = 93.8 bits (231), Expect = 2e-17, Method: Composition-based stats.
Identities = 39/236 (16%), Positives = 76/236 (32%), Gaps = 28/236 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----HGWITAEYGML 66
R +++ V+ A G+ +K+GDT +L+TAT +K + G +
Sbjct: 12 RTLTVDIGRVAAQANGAVFIKYGDTTVLSTATASDKPRDGVDFFPLSVEFEEKMYSVGKI 71
Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
P R G+ + R+I R +R + + + +
Sbjct: 72 PGGFNKR------EGKASENAILTDRVIDRPMRPLFPKDYRNDVTLNNLVMSVDPECRPE 125
Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
A+ G +A+H G A G++ G IV+ + D
Sbjct: 126 IVAMIGTALAVH-------------ISDIPFDGPCAMTQMGLVDGEFIVNPSQKQWDEGD 172
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNEV 242
+ T ++ ++ A +D + D +I I +E+
Sbjct: 173 LQLTVASTKE-KVIMIEAGANE--IPEDQMIEAIYKCHDINQTVIAFMDQ-IRDEI 224
>gi|291529163|emb|CBK94749.1| polyribonucleotide nucleotidyltransferase [Eubacterium rectale
M104/1]
Length = 696
Score = 122 bits (305), Expect = 5e-26, Method: Composition-based stats.
Identities = 39/241 (16%), Positives = 73/241 (30%), Gaps = 10/241 (4%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL-EEKVPMWIRNTKHGWIT 60
R GR NQ+R ++ + GS + G T + TL I T
Sbjct: 312 RPDGRAINQIRPLAAEVDLIPRVHGSAMFTRGQTQICDVVTLAPLSEIQKIDGLDANITT 371
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
Y V VS G R + +AL V+ I + +
Sbjct: 372 KRYMHHYNFPAYSVGETKVSRGPGRREIGHGALAEKALVPVLPSVEEFPYTIRAVSETFE 431
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
++G T A+ + ++L ++ V + D+
Sbjct: 432 SNGSTSMASTCASCMSLMAAGVPIKAMVAGISCGLV-------TGDTDDDFLVLTDIQGL 484
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI-KLQKDVIS 239
ED D+D T G I +Q + ++ + ++ ++ ++ I+
Sbjct: 485 EDFFGDMDFKVTGTHKG-ITAIQMDIKIHGLTRPIVEEAIARTREARLYIMDEVMSKAIA 543
Query: 240 N 240
Sbjct: 544 E 544
Score = 92.6 bits (228), Expect = 5e-17, Method: Composition-based stats.
Identities = 39/236 (16%), Positives = 76/236 (32%), Gaps = 28/236 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----HGWITAEYGML 66
R +++ V+ A G+ +K+GDT +L+TAT +K + G +
Sbjct: 12 RTLTVDIGRVAAQANGTVFIKYGDTTVLSTATASDKPRDGVDFFPLSVEFEEKMYSVGKI 71
Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
P R G+ + R+I R +R + + + +
Sbjct: 72 PGGFNKR------EGKASENAILTDRVIDRPMRPLFPKDYRNDVTLNNLVMSVDPECRPE 125
Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
A+ G +A+H G A G++ G IV+ + D
Sbjct: 126 IVAMIGTALAVH-------------ISDIPFDGPCAMTQMGLVDGEFIVNPSQKQWDEGD 172
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNEV 242
+ T ++ ++ A +D + D +I I +E+
Sbjct: 173 LQLTVASTKE-KVIMIEAGANE--IPEDQMIEAIYKCHDINQTVIAFMDQ-IRDEI 224
>gi|255579328|ref|XP_002530509.1| Exosome complex exonuclease RRP41, putative [Ricinus communis]
gi|223529966|gb|EEF31893.1| Exosome complex exonuclease RRP41, putative [Ricinus communis]
Length = 241
Score = 122 bits (305), Expect = 5e-26, Method: Composition-based stats.
Identities = 59/242 (24%), Positives = 102/242 (42%), Gaps = 22/242 (9%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVP-MWIRNTKHGWI 59
+RL GR+ +MR++ A+GS + + G+T ++ +V + +
Sbjct: 9 LRLDGRRPMEMRQLRAQIGAVSKADGSAVFEMGNTKVIAAVYGPREVQNRSQQIIDQALV 68
Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119
EY M STG+R+++ R I +I + + + + QI I V+
Sbjct: 69 RCEYTMANFSTGDRMRKPKGDRRSTE----ISLVIRQTMEECILTHLMPRSQIDIYVQVL 124
Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179
QADGGTR+A I A +AL D M D V + S G L P++DL+Y
Sbjct: 125 QADGGTRSACINAATLALADAGIPMRDL-------------VTSCSAGYLNSTPLLDLNY 171
Query: 180 GEDSTIDVDANF-VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
EDS D ++ + +Q A+ D F ++ LA + + ++++
Sbjct: 172 VEDSAGGPDVTVGILPKLDKVTLLQMDAK---LPIDTFENVMQLAVEGCKAIANYIREIL 228
Query: 239 SN 240
Sbjct: 229 LE 230
>gi|269986356|gb|EEZ92654.1| 3' exoribonuclease [Candidatus Parvarchaeum acidiphilum ARMAN-4]
gi|326422442|gb|EGD71841.1| 3' exoribonuclease [Candidatus Parvarchaeum acidiphilum
ARMAN-4_'5-way FS']
Length = 235
Score = 122 bits (305), Expect = 6e-26, Method: Composition-based stats.
Identities = 56/244 (22%), Positives = 99/244 (40%), Gaps = 26/244 (10%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKV-PMWIRNTKHGWIT 60
R R+ +++R + + A+GS K G+T + E+V P I G I
Sbjct: 5 RFDKRKFDELRPMEAETGIIPNAKGSARFKIGNTEAIAAVYGPEEVKPRHIEKVNKGIIV 64
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
+Y MLP S +R + R EI ++I AL V L + + + + Q
Sbjct: 65 CKYDMLPFSVPDRARPGMDR-----RDIEISQVITNALNRAVILEEMPRAMVNVRIYITQ 119
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
AD GTR A++T A +A D M D VAA++ G + +DL
Sbjct: 120 ADAGTRCASLTAASMACADAGLPMRDL-------------VAAVAAGKIGDSICLDLTKE 166
Query: 181 EDSTIDVDAN----FVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
E+ + A ++ IV +Q + +++ ++ + K ++ +L+K
Sbjct: 167 EEDFHEGGATDVPIALLPSKNEIVLLQLDGK---VTREELKKVIEMGKKGAMEIYELEKA 223
Query: 237 VISN 240
+
Sbjct: 224 ALKR 227
>gi|146302863|ref|YP_001190179.1| exosome complex RNA-binding protein Rrp42 [Metallosphaera sedula
DSM 5348]
gi|145701113|gb|ABP94255.1| ribosomal RNA-processing protein RRP42 [Metallosphaera sedula DSM
5348]
Length = 280
Score = 121 bits (304), Expect = 6e-26, Method: Composition-based stats.
Identities = 62/254 (24%), Positives = 99/254 (38%), Gaps = 23/254 (9%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R GR+ R +S+T +K A+GS LVK GDT +L +EE P + G +
Sbjct: 28 RSDGRKFTDYRPLSITLGYAKKADGSALVKLGDTTVLAGVKVEEDEP-YPDTPNQGNLVV 86
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALG--------SRQII 113
+LP + G + E+ R++ R+LR + G +
Sbjct: 87 NAELLPLAYETFEP-----GPPDENAIELSRVVDRSLRDSKAVDLSGLVIEPGKKVWTVW 141
Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQL--------SQVLKGHVAAIS 165
+D V+ G A A AL+D N + +K V +S
Sbjct: 142 VDISVLDYGGNVLDACTIAAVAALYDAKLPKVVRENDNIIIQKEEKVTPLPIKYPVVTVS 201
Query: 166 CGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKD 225
+ + +VD D E+ +D +F SG+IV +Q S E +FSQ +A
Sbjct: 202 VAKIGKFLVVDPDLEEEGIMDAKISFSYIPSGNIVGIQKSGE-GSFSQQEVEVAEGMASA 260
Query: 226 RIADLIKLQKDVIS 239
L++ K +I
Sbjct: 261 TSQKLLEELKSLIG 274
>gi|332796516|ref|YP_004458016.1| 3' exoribonuclease [Acidianus hospitalis W1]
gi|332694251|gb|AEE93718.1| 3' exoribonuclease [Acidianus hospitalis W1]
Length = 276
Score = 121 bits (304), Expect = 6e-26, Method: Composition-based stats.
Identities = 56/255 (21%), Positives = 96/255 (37%), Gaps = 23/255 (9%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+R GR+ N+ R +S+T +K A+GS LVK GDT +L +E + P + G +
Sbjct: 27 IRADGRKFNEYRPLSITLSYAKKADGSALVKLGDTTVLAGVKVEPEEP-FEDTPNQGNLV 85
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSA--------LGSRQI 112
+LP + G + E+ R++ R+LR + +
Sbjct: 86 VNVELLPLAYETFEP-----GPPDENAIELSRVVDRSLRDSKSIDLSKLVIEPGKKIWTV 140
Query: 113 IIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLS--------QVLKGHVAAI 164
+D V+ G A A AL+D + V +
Sbjct: 141 WVDIYVLDYGGNILDACTLAAVSALYDTRLPKVVKEGDEIKIIKEEKGEKLPMNFPVVTV 200
Query: 165 SCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAK 224
S + + +VD D E+ +D + T G IV +Q + TF+ + LA+
Sbjct: 201 SVAKIGKHLVVDPDLDEEGIMDAKISLSYTPEGRIVGIQKTG-IGTFTLTEIDNVETLAR 259
Query: 225 DRIADLIKLQKDVIS 239
L++ K I+
Sbjct: 260 SVSQKLLEELKKQIN 274
>gi|307214803|gb|EFN89690.1| Exosome complex exonuclease RRP41 [Harpegnathos saltator]
Length = 271
Score = 121 bits (304), Expect = 6e-26, Method: Composition-based stats.
Identities = 45/251 (17%), Positives = 93/251 (37%), Gaps = 14/251 (5%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWI-RNTKHGWI 59
+R+ GR+ ++R+I + V A+GS ++ G+T +L + I +NT +
Sbjct: 13 LRVDGRRALELRQIRIRMGVFGQADGSAYIEHGNTKVLAAVYGPHQPRNNIAKNTTKAIV 72
Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119
+Y M S + R +SQE + A+ +++ L QI I +++
Sbjct: 73 NCQYSMAVFSFTS--GERKRRPRGDWKSQERSIQLRHAMEAIIHLELYPRSQIDIFVEIL 130
Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179
Q DG A++ A +AL D +++ + ++ + + G +
Sbjct: 131 QVDGSDYCASVNAATLALIDAGIPIKNYAVGCTVALINTPSTDEQDKTLAGGVLDANFVE 190
Query: 180 GEDSTIDVDAN-------FVMTDSGHIVEVQGSAERATFSQDHFFAMLNL-AKDRIADLI 231
+ + ++G IV G+ +R S L A D+
Sbjct: 191 EYSPGVTLSVVALPGTSEVESNENGLIVVAHGTGQRLHLSH---LEALKQRALQGCKDIR 247
Query: 232 KLQKDVISNEV 242
+ + +
Sbjct: 248 TIMDQSVRQHL 258
>gi|170290983|ref|YP_001737799.1| exosome complex exonuclease 1 [Candidatus Korarchaeum cryptofilum
OPF8]
gi|170175063|gb|ACB08116.1| exosome complex exonuclease 1 [Candidatus Korarchaeum cryptofilum
OPF8]
Length = 248
Score = 121 bits (304), Expect = 7e-26, Method: Composition-based stats.
Identities = 64/242 (26%), Positives = 104/242 (42%), Gaps = 23/242 (9%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKV-PMWIRNTKHGWI 59
+R GR ++MR I + V + A+GS V++G +L +V P + I
Sbjct: 18 IRTDGRLPHEMRPIKMMVGVLEKADGSAFVEWGGNRILAAVFGPREVHPKHMVLPDRALI 77
Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119
A Y M P ST R + RS E+ ++I AL+ + I I +V+
Sbjct: 78 RARYNMAPFSTPERRRPG-----PDRRSIELSKVIREALKPAIFAENYPGSVIDIFVEVL 132
Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179
++D GTR A I A +AL M V+A S G + + +VD ++
Sbjct: 133 RSDAGTRVAGINAASLALASAGVAMRGL-------------VSACSVGRVGSFIVVDPNH 179
Query: 180 GEDSTIDVDANF-VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
ED D D +M +S I +Q T S++ F L+L + I + ++QK+ +
Sbjct: 180 DEDMWGDSDMPLAMMMESEEITLLQADG---TLSEEEFKEALDLGRRAIRFVYEVQKEAL 236
Query: 239 SN 240
Sbjct: 237 KR 238
>gi|281355549|ref|ZP_06242043.1| polyribonucleotide nucleotidyltransferase [Victivallis vadensis
ATCC BAA-548]
gi|281318429|gb|EFB02449.1| polyribonucleotide nucleotidyltransferase [Victivallis vadensis
ATCC BAA-548]
Length = 703
Score = 121 bits (304), Expect = 7e-26, Method: Composition-based stats.
Identities = 42/247 (17%), Positives = 74/247 (29%), Gaps = 22/247 (8%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW-------IRN 53
R GR ++R +S V GS L G+T L ATL +
Sbjct: 317 FRPDGRSTTEIRPLSAEVGVLPVVHGSALFSRGETQALVLATLGNEKDAQEADDLTSETG 376
Query: 54 TKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQII 113
Y S G + R+ G R++ VV +
Sbjct: 377 ITKKRFYLHYNFPNFSVGEVGRITGPGRREIGHGNL----AERSVSKVVPKD--FPYVVR 430
Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP 173
+++ ++G T A++ GA +AL D + ++
Sbjct: 431 CVSEIMSSNGSTSMASVCGATLALMDAGVPISAPVAGISCGL--------VTGDNGERLL 482
Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
+ D+ ED D+D T G I Q + D + + ++ +
Sbjct: 483 LTDIIGAEDHFGDMDFKVCGTRDG-ITGFQLDLKLPGIPIDLLCEGMERNRIARMKILDV 541
Query: 234 QKDVISN 240
+ I+
Sbjct: 542 MEACIAK 548
Score = 91.8 bits (226), Expect = 7e-17, Method: Composition-based stats.
Identities = 39/234 (16%), Positives = 78/234 (33%), Gaps = 27/234 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLE---EKVPMWIRNTKHGWITAEYGMLP 67
R + ++ V+K A GSCLV+ GDT +LT A E + + + G P
Sbjct: 14 RTMEISTGKVAKLANGSCLVRLGDTIVLTAACSGAPREGTDFFPLQVDYREKYSAAGKFP 73
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R GR + RMI R +R + QI
Sbjct: 74 GGYIKR------EGRPSTKEILTCRMIDRPIRPLFPDYFFDEVQISSVLLSADGVNEPDV 127
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
A+ G ++ +G + A+ G++ G +++ + +
Sbjct: 128 LAMVG-------------ASASLMLSDLPFQGPIGAVRVGLVDGQFVINPTRAQMEQSKL 174
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
+ + ++ ++ E S+ + LA + + Q + ++ +
Sbjct: 175 ELIYAGRPD-QVIMIE--GEADFVSEAQMKEAMYLANEAVKKQCDAQIE-LAKK 224
>gi|255087891|ref|XP_002505868.1| predicted protein [Micromonas sp. RCC299]
gi|226521139|gb|ACO67126.1| predicted protein [Micromonas sp. RCC299]
Length = 791
Score = 121 bits (304), Expect = 7e-26, Method: Composition-based stats.
Identities = 39/239 (16%), Positives = 86/239 (35%), Gaps = 3/239 (1%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R+ GR ++R++ V GS + + G+T L T T+ + + + G
Sbjct: 360 RVDGRGIRELRQLGAESNVLPVVHGSSIFERGNTQALATVTIGKLIDAQKLDAPVGPDNR 419
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
+ + G R + ++L ++ + + I+ + +++
Sbjct: 420 RMMLHYSFPSFSINETPRRGGLSRREIGHGALAEKSLAGIIPAAKEWPFAVRINAETMES 479
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
+G + AA+ +AL D +++ + V+ + + + D+ E
Sbjct: 480 NGSSSMAAVCSGSLALMDAGVPIKEHVGAISVGLVMDEDE--QTGKVTRYELLSDIMGLE 537
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
D D+D T G I +Q + A D +++A + +I IS
Sbjct: 538 DVLGDMDFKIAGTR-GGITGIQLDCKPAGIPLDILIEAMDVASIARSAVIDEMDRAISK 595
Score = 66.4 bits (160), Expect = 3e-09, Method: Composition-based stats.
Identities = 33/229 (14%), Positives = 69/229 (30%), Gaps = 28/229 (12%)
Query: 16 LTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPM----WIRNTKHGWITAEYGMLPRST 70
V++ +G+ + GD+ ++ A + + + +G +P +
Sbjct: 53 FETGRVARLTDGAIVASMGDSRVICAAVCSRDENPDAGFFPLQVDYRERHSAFGKIPPTF 112
Query: 71 GNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAI 130
R G R R++ RA+R + S + A+
Sbjct: 113 TRR------EGAPKDREVLAMRVVDRAIRPLFPKSFSRDTSVQAIVLATDQSQDPAVLAV 166
Query: 131 TGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDAN 190
GA A S G V A+ +L + L+ +
Sbjct: 167 NGASAA-------------LSVSSIPWNGPVGAVRVSVLGDGNEIILNPSDKDVEASKLT 213
Query: 191 -FVMTDSGHIVEVQ---GSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
F + + ++ G+A+ + + L A + LI+ Q+
Sbjct: 214 LFYAGNENRTLMIEAQAGTADEGGVPESVVASALRAAHEAAKVLIEPQR 262
>gi|218191180|gb|EEC73607.1| hypothetical protein OsI_08089 [Oryza sativa Indica Group]
Length = 1030
Score = 121 bits (304), Expect = 7e-26, Method: Composition-based stats.
Identities = 50/294 (17%), Positives = 90/294 (30%), Gaps = 57/294 (19%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56
+R+ GRQ +++R + GS L GDT +L T T + + I
Sbjct: 372 LRVDGRQLDEVRPLYCESSTYPILHGSALFSRGDTQVLCTVTLGAPGDAQRLDSIVGPPT 431
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGR------------------------------ 86
Y P S KR ++ R+ G
Sbjct: 432 KRFMLHYSFPPFSINEVAKRGGLNRREVGHVTRLPIAWAHTDGLHGPIRLGDELRVWIEH 491
Query: 87 --------------------SQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
+ +AL +V+ + ++ +V+ +DG T
Sbjct: 492 KALDPTGFLLTNRLVFWERQWLSAGTLAEKALLAVLPPEGEFPYTVRVNSEVMASDGSTS 551
Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
A++ G +AL D + + + V + + + + D+ ED D
Sbjct: 552 MASVCGGSMALMDAGIPVREHVAGVSVGLVSEVDQ--TTGDISSYRILTDILGLEDHLGD 609
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
+D T G I +Q + A D L A+ ++ IS+
Sbjct: 610 MDFKIAGTRRG-ITAIQLDIKPAGIPLDIICESLEPARKARNQILDRMDQEISS 662
Score = 84.9 bits (208), Expect = 9e-15, Method: Composition-based stats.
Identities = 36/232 (15%), Positives = 72/232 (31%), Gaps = 21/232 (9%)
Query: 6 RQENQM--REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAE 62
R+E ++ R IS ++++A GS ++ DTH+L+T + E
Sbjct: 62 REEFEIGGRVISFETGKMARFANGSVVISMDDTHVLSTVAAAKSSEPVRDFLPLTVDYQE 121
Query: 63 YGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQAD 122
R + ++ R+I R +R + QI+++
Sbjct: 122 KQYAQGVIPTTYMRREGAPKEREL--LCGRIIDRPIRPLFPPGFYHEVQIMVNVISSDGK 179
Query: 123 GGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGED 182
A + AL G + I G + G +++ E
Sbjct: 180 QDPDVMAANASSAALM-------------LSDIPWNGPIGVIRVGRIDGNFVLNPTVDEL 226
Query: 183 STIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
D++ + + + + A ++ A + LA I Q
Sbjct: 227 GLSDLNLVYACSRDKTL-MIDVQARE--ITERDLQAGMKLAHAEAVKCINPQ 275
>gi|308183320|ref|YP_003927447.1| polynucleotide phosphorylase/polyadenylase [Helicobacter pylori
PeCan4]
gi|308065505|gb|ADO07397.1| polynucleotide phosphorylase/polyadenylase [Helicobacter pylori
PeCan4]
Length = 688
Score = 121 bits (304), Expect = 7e-26, Method: Composition-based stats.
Identities = 43/248 (17%), Positives = 82/248 (33%), Gaps = 24/248 (9%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW------IRNT 54
+R R ++R IS+ + A S L G T L L +
Sbjct: 313 IRPDKRALEEVRPISIESNLLPMAHSSILFTRGQTQSLVVGVLGTDNDAQTHESLEHKTP 372
Query: 55 KHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIII 114
Y P G A S R+ G RAL + + + I +
Sbjct: 373 IKERFMFHYNFPPFCVGEASSIGATSRRELGHGNL----AKRALETSIKNK---EQVIRL 425
Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPI 174
++++++G + A++ +AL+ + D + V +G AI
Sbjct: 426 VSEILESNGSSSMASVCAGSLALYASGVEIHDLVAGVAMGMVSEGQDHAILSD------- 478
Query: 175 VDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
+ ED+ D+D G I +Q + + + + L AK ++K+
Sbjct: 479 --ISGLEDAEGDMDFKIAGNVEG-ITAMQMDTKMSGIQLEVLYQALLQAKRARKHILKIM 535
Query: 235 KDVISNEV 242
+ ++
Sbjct: 536 HEA-KEKI 542
Score = 66.0 bits (159), Expect = 5e-09, Method: Composition-based stats.
Identities = 33/224 (14%), Positives = 66/224 (29%), Gaps = 26/224 (11%)
Query: 20 VSKYAEGSCLVKFGDTHLLTTATLEEKV---PMWIRNTKHGWITAEYGMLPRSTGNRVKR 76
V+K A S + + G T +L + +E + + + G +P R
Sbjct: 20 VAKQATSSLMYRLGKTIILASVCVEREPVSEDFLPLVVQFLEKSYAAGKIPGGFVKR--- 76
Query: 77 EAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVA 136
GR R+I R LR + QI + + + +A+ A A
Sbjct: 77 ---EGRAQDFEILTSRLIDRTLRPLFPKDYRYPTQITLMVLSHDIENDLQVSALNAASAA 133
Query: 137 LHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDS 196
L V+A + I++ + +D T
Sbjct: 134 LFLAHIAPIKS-------------VSACRIAKMDNEFIINPSASLLNQSSLDLFVSGTKE 180
Query: 197 GHIVEVQGSAER---ATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
+ ++ + + L LA+ + + L ++
Sbjct: 181 -SLNMIEMRSLGQQLNALEEPLMLEALELAQKSLKETCTLYEEA 223
>gi|317009891|gb|ADU80471.1| polynucleotide phosphorylase/polyadenylase [Helicobacter pylori
India7]
Length = 688
Score = 121 bits (303), Expect = 8e-26, Method: Composition-based stats.
Identities = 42/248 (16%), Positives = 82/248 (33%), Gaps = 24/248 (9%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW------IRNT 54
+R R ++R I + + A S L G T L L +
Sbjct: 313 IRPDKRALEEVRPILIESGLLPMAHSSILFTRGQTQSLVVGVLGTDNDAQTHESLEHKTP 372
Query: 55 KHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIII 114
Y P G A S R+ G RAL + + + I +
Sbjct: 373 IKERFMFHYNFPPFCVGEASSIGATSRRELGHGNL----AKRALETSIKNK---EQVIRL 425
Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPI 174
++++++G + A++ +AL+ + D + V +G AI
Sbjct: 426 VSEILESNGSSSMASVCAGSLALYASGVEIYDLVAGVAMGMVSEGQDHAILSD------- 478
Query: 175 VDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
+ ED+ D+D G I +Q + + + + L AK+ ++K+
Sbjct: 479 --ISGLEDAEGDMDFKIAGNLEG-ITAMQMDTKMSGIQLEVLYQALLQAKEARKHILKIM 535
Query: 235 KDVISNEV 242
+ ++
Sbjct: 536 HEA-KEKI 542
Score = 64.1 bits (154), Expect = 1e-08, Method: Composition-based stats.
Identities = 34/224 (15%), Positives = 68/224 (30%), Gaps = 26/224 (11%)
Query: 20 VSKYAEGSCLVKFGDTHLLTTATLEEKV---PMWIRNTKHGWITAEYGMLPRSTGNRVKR 76
V+K A S + + G T +L + E + + + G +P R
Sbjct: 20 VAKQATSSLMYRLGKTIILASVCAEREPVSEDFLPLVVQFLEKSYAAGKIPGGFVKR--- 76
Query: 77 EAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVA 136
GR R+I R LR + QI + + + +A+ A A
Sbjct: 77 ---EGRAQDFEILTSRLIDRTLRPLFPKDYRYPTQITLMVLSHDIENDLQVSALNAASAA 133
Query: 137 LHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDS 196
L V+A + I++ + + +D T
Sbjct: 134 LFLARIAPIKS-------------VSACRIARIGNEFIINPNTSLLNQSSLDLFVSGTKE 180
Query: 197 GHIVEVQGSA---ERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
+ ++ + + + L LA+ + + L ++V
Sbjct: 181 -SLNMIEMRSLGQKLNALEEPLMLKALELAQKSLKETCTLYEEV 223
>gi|21228726|ref|NP_634648.1| exosome complex RNA-binding protein Rrp42 [Methanosarcina mazei
Go1]
gi|29336794|sp|Q8PTT7|ECX2_METMA RecName: Full=Probable exosome complex exonuclease 2
gi|20907235|gb|AAM32320.1| Ribonuclease [Methanosarcina mazei Go1]
Length = 266
Score = 121 bits (303), Expect = 9e-26, Method: Composition-based stats.
Identities = 46/247 (18%), Positives = 89/247 (36%), Gaps = 15/247 (6%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R GR RE+ L V AEGS V G+T +L L+ P + + G I
Sbjct: 25 RQDGRGFKDFRELKLETNVISKAEGSAKVTLGNTQVLVGVKLQTGTP-FPDSQDEGVIIT 83
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGR------ALRSVVDLSALGS--RQII 113
+ P ++ + E+ R++ R A+ +G +
Sbjct: 84 NLELNPIASPEFEPGP-----PREDAIEMARVVDRGIRESGAIDIKKLCITVGESVWIVF 138
Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP 173
ID ++ DG A+ A AL + E + +K I+ +
Sbjct: 139 IDVHILNNDGNIIDASCLAAIAALMTTMVPNEQQGLGENVPLAMKEMPVGITLAKIGSKL 198
Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
+VD E++ + V + G + +Q ++ F +++A ++ A++ L
Sbjct: 199 MVDPSLDEEAVCETKLTIVSSSDGSVAGMQKMG-PVPLTEAELFEAIDMAIEKAAEIRGL 257
Query: 234 QKDVISN 240
+ ++
Sbjct: 258 YLEGLAK 264
>gi|159040754|ref|YP_001540006.1| exosome complex exonuclease 1 [Caldivirga maquilingensis IC-167]
gi|157919589|gb|ABW01016.1| exosome complex exonuclease 1 [Caldivirga maquilingensis IC-167]
Length = 242
Score = 121 bits (303), Expect = 9e-26, Method: Composition-based stats.
Identities = 61/240 (25%), Positives = 100/240 (41%), Gaps = 23/240 (9%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEK-VPMWIRNTKHGWIT 60
R+ GR + R +++ V A GS LV +G+T +L + +P +I +
Sbjct: 15 RVDGRLPEEHRPVTMQVGVLPNANGSALVAYGNTVVLAAVYGPREPIPRYITVPDKAVVR 74
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
Y M P ST +R + R EI +++ +AL +VV L I + +V+Q
Sbjct: 75 VRYHMAPFSTDDRK-----NPAPTRREIEISKVVKQALETVVFLEQYPKSTIDVFLEVLQ 129
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADG TR +IT A +AL D M D V +S G + IVDL+
Sbjct: 130 ADGSTRVTSITAASLALADAGIPMRDL-------------VVGVSVGKINDTVIVDLNKL 176
Query: 181 EDSTIDVDANFVMT-DSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
ED+ D D + ++ +Q + L LA ++ + ++V+
Sbjct: 177 EDNYGDGDLPIAIAYRKNWVLLMQLDG---VWKPSEVKRGLELAFKAAENIYRNMREVLK 233
>gi|308800758|ref|XP_003075160.1| putative polyribonucleotide nucleotidyltra (ISS) [Ostreococcus
tauri]
gi|116061714|emb|CAL52432.1| putative polyribonucleotide nucleotidyltra (ISS) [Ostreococcus
tauri]
Length = 620
Score = 121 bits (303), Expect = 9e-26, Method: Composition-based stats.
Identities = 36/238 (15%), Positives = 82/238 (34%), Gaps = 4/238 (1%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R+ GR +R + + GS L + G+T L T TL + G +
Sbjct: 210 RVDGRGLYDLRALDGVAGLMPIVHGSALFERGNTQALATITLGSLDDSQKLDNLTGPTSK 269
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
+ S + E + R + ++L V + ++ + +++
Sbjct: 270 RLILH-YSFPSFSVNETGARGISRREVGHGALAEKSLLGVFPDEESFPFAVRVNTETLES 328
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
+G + AA+ +AL D +++ + ++ + + + D+ E
Sbjct: 329 NGSSSMAAVCSGSMALMDAGVPIKEHVGAISIGLIMDEDE--TTREVKRYKLMDDIMGLE 386
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
D D+D T +G + +Q + + L+ A +I + + +
Sbjct: 387 DVLGDMDFKIAGTRTG-VTGIQLDCKPMGIPLEILIEALDRASAARQKVIDVMERAVK 443
>gi|225374866|ref|ZP_03752087.1| hypothetical protein ROSEINA2194_00489 [Roseburia inulinivorans DSM
16841]
gi|225213249|gb|EEG95603.1| hypothetical protein ROSEINA2194_00489 [Roseburia inulinivorans DSM
16841]
Length = 697
Score = 121 bits (303), Expect = 1e-25, Method: Composition-based stats.
Identities = 40/245 (16%), Positives = 76/245 (31%), Gaps = 18/245 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE-----EKVPMWIRNTKH 56
R GR NQ+R ++ + GS + G T + TL +K+ N
Sbjct: 312 RPDGRAINQIRPLAAEVDLIPRVHGSAMFTRGQTQICDVVTLAPLSEVQKIDGLDANITT 371
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
+Y S G R+ G +AL +V+ I
Sbjct: 372 KRYIHQYNFPAYSVGETKVSRGPGRREIGHGAL----AEKALVAVLPSEEEFPYAIRAVS 427
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+ +++G T A+ + +AL ++ V + D
Sbjct: 428 ETFESNGSTSMASTCASCMALMAAGVPIKSMVAGISCGLV-------TGDTDDDYIVLTD 480
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI-KLQK 235
+ ED D+D T G I +Q + ++ + ++ ++ ++
Sbjct: 481 IQGLEDFFGDMDFKVTGTHKG-ITAIQMDIKIHGLTRPIVEEAIARTREARLYIMDEVMS 539
Query: 236 DVISN 240
IS
Sbjct: 540 KAISK 544
Score = 94.1 bits (232), Expect = 1e-17, Method: Composition-based stats.
Identities = 32/234 (13%), Positives = 71/234 (30%), Gaps = 27/234 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----HGWITAEYGML 66
R +++ V A G+ L+K+G+T +L+T +K + G +
Sbjct: 12 RTLTVDIGRVCAQANGAALIKYGETTVLSTVVASDKPRDGVDFFPLSVEFEEKMYAVGKI 71
Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
P R G+ + R+I R +R + + + +
Sbjct: 72 PGGFNKR------EGKASENAILTSRVIDRPMRPLFPKDYRNDVTLNNMVMSVDPECRPE 125
Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
+ G+ + G A GM+ G IV+ D
Sbjct: 126 VVGMIGSALVTTM-------------SDIPFDGPCAMTQMGMVDGEFIVNPSQKVWDEGD 172
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
+ T + ++ ++ A ++ + D +I+ +++
Sbjct: 173 LQLTVASTRT-KVIMIEAGANE--IPEEKMIEAIYKCHDVNQTIIQFMDKIVAE 223
>gi|208435109|ref|YP_002266775.1| polynucleotide phosphorylase [Helicobacter pylori G27]
gi|257096696|sp|B5Z8L0|PNP_HELPG RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|208433038|gb|ACI27909.1| polynucleotide phosphorylase [Helicobacter pylori G27]
Length = 688
Score = 121 bits (302), Expect = 1e-25, Method: Composition-based stats.
Identities = 42/248 (16%), Positives = 82/248 (33%), Gaps = 24/248 (9%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW------IRNT 54
+R R ++R I + + A S L G T L L +
Sbjct: 313 IRPDKRALEEVRPILIESDLLPMAHSSILFTRGQTQSLVVGVLGTDNDAQTHESLEHKTP 372
Query: 55 KHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIII 114
Y P G A S R+ G RAL + + + I +
Sbjct: 373 IKERFMFHYNFPPFCVGEASSIGAASRRELGHGNL----AKRALETSIKNK---EQVIRL 425
Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPI 174
++++++G + A++ +AL+ + D + V +G AI
Sbjct: 426 VSEILESNGSSSMASVCAGSLALYASGVEIHDLVAGVAMGMVSEGQDYAILSD------- 478
Query: 175 VDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
+ ED+ D+D G I +Q + + + + L AK+ ++K+
Sbjct: 479 --ISGLEDAEGDMDFKIAGNLEG-ITAMQMDTKMSGIQLEILYQALLQAKEARKHILKIM 535
Query: 235 KDVISNEV 242
+ ++
Sbjct: 536 HEA-KEKI 542
Score = 68.3 bits (165), Expect = 8e-10, Method: Composition-based stats.
Identities = 34/224 (15%), Positives = 69/224 (30%), Gaps = 26/224 (11%)
Query: 20 VSKYAEGSCLVKFGDTHLLTTATLEEKV---PMWIRNTKHGWITAEYGMLPRSTGNRVKR 76
V+K A S + + G T +L + +E + + + G +P R
Sbjct: 20 VAKQATSSLMYRLGKTIILASVCVEREPVSEDFLPLVVQFLEKSYAAGKIPGGFVKR--- 76
Query: 77 EAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVA 136
GR R+I R R + QI + + + +A+ A VA
Sbjct: 77 ---EGRAQDFEILTSRLIDRTFRPLFPKDYRYPTQITLMVLSHDIENDLQVSALNAASVA 133
Query: 137 LHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDS 196
L V+A + I++ + + +D T
Sbjct: 134 LFLAHIAPIKS-------------VSACRIARIDDEFIINPNTSLLNQSSLDLFVSGTKE 180
Query: 197 GHIVEVQGSA---ERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
+ ++ + + + L LA+ + + L ++V
Sbjct: 181 -SLNMIEMRSLGQKLNALEEPLMLKALELAQKSLKETCTLYEEV 223
>gi|15612201|ref|NP_223854.1| polynucleotide phosphorylase/polyadenylase [Helicobacter pylori
J99]
gi|81555135|sp|Q9ZK11|PNP_HELPJ RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|4155738|gb|AAD06718.1| POLYRIBONUCLEOTIDE NUCLEOTIDYLTRANSFERASE [Helicobacter pylori J99]
Length = 688
Score = 121 bits (302), Expect = 1e-25, Method: Composition-based stats.
Identities = 42/248 (16%), Positives = 80/248 (32%), Gaps = 24/248 (9%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT------ 54
+R R ++R IS+ + A S L G T L L
Sbjct: 313 IRPDKRALEEVRPISIESNLLPMAHSSILFTRGQTQSLVVGVLGMDNDAQTHENLEHKAP 372
Query: 55 KHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIII 114
Y P G A S R+ G RAL + + + I +
Sbjct: 373 IKERFMFHYNFPPFCVGEASSIGATSRRELGHGNL----AKRALETSIKNK---EQVIRL 425
Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPI 174
++++++G + A++ +AL+ + D + V + AI
Sbjct: 426 VSEILESNGSSSMASVCAGSLALYASGVEIHDLVAGVAMGMVSERQDHAILSD------- 478
Query: 175 VDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
+ ED+ D+D G I +Q + + + + L AK ++K+
Sbjct: 479 --ISGLEDAEGDMDFKIAGNLEG-ITAMQMDTKMSGIQLEVLYQALLQAKRARKHILKIM 535
Query: 235 KDVISNEV 242
+ ++
Sbjct: 536 HEA-KEKI 542
Score = 69.5 bits (168), Expect = 4e-10, Method: Composition-based stats.
Identities = 32/224 (14%), Positives = 66/224 (29%), Gaps = 26/224 (11%)
Query: 20 VSKYAEGSCLVKFGDTHLLTTATLEEKV---PMWIRNTKHGWITAEYGMLPRSTGNRVKR 76
V+K A S + + G T +L + +E + + + G +P R
Sbjct: 20 VAKQATSSLMYRLGKTLILASVCVEREPVSEDFLPLVVQFLEKSYAAGKIPGGFVKR--- 76
Query: 77 EAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVA 136
GR R+I R LR + QI + + + +A+ A
Sbjct: 77 ---EGRAQDFEILTSRLIDRTLRPLFPKDYRYPTQITLMVLNHDIENDLQVSALNAASAT 133
Query: 137 LHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDS 196
L V+A + I++ + +D T
Sbjct: 134 LFLAHIAPIKS-------------VSACRIARVDNEFIINPSASLLNQSSLDLFVSGTKE 180
Query: 197 GHIVEVQGSA---ERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
+ ++ + + + L LA+ + + L ++
Sbjct: 181 -SLNMIEMRSLGQKLNALEEPLMLEALELAQKSLKETCALYEEA 223
>gi|242006246|ref|XP_002423964.1| polyribonucleotide nucleotidyltransferase 1, putative [Pediculus
humanus corporis]
gi|212507240|gb|EEB11226.1| polyribonucleotide nucleotidyltransferase 1, putative [Pediculus
humanus corporis]
Length = 708
Score = 121 bits (302), Expect = 1e-25, Method: Composition-based stats.
Identities = 50/252 (19%), Positives = 89/252 (35%), Gaps = 24/252 (9%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE--------EKVPMWIR 52
+R GR ++R I + K GS L + G T + T L+ +++ M
Sbjct: 297 IRCDGRLPVELRNIECESNLFKPLHGSALFQRGQTQVFCTVALDSPSSALKMDRISMLTS 356
Query: 53 NTKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQI 112
K Y P +T K + R+ G +AL++ + I
Sbjct: 357 GLKEKNFFVHYEFPPFATKEIGKLGPIGRREIGHGSL----AEKALKANIP--ENFPFTI 410
Query: 113 IIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY 172
+ +V++++G + A + G +AL D + + V K G++
Sbjct: 411 RLTSEVLESNGSSSMATVCGGTLALLDAGVPLIKECAGVAMGVVTKWDDD--KSGIIDYV 468
Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI- 231
+ D+ ED D+D T + HI +Q + + AK I+ +
Sbjct: 469 ILTDILGIEDYFGDMDMKVAGTKN-HITAIQMDVKTPGLPIKIVMESITQAKQAISTTLT 527
Query: 232 ------KLQKDV 237
LQK V
Sbjct: 528 RMFKDVDLQKKV 539
Score = 67.9 bits (164), Expect = 1e-09, Method: Composition-based stats.
Identities = 39/216 (18%), Positives = 72/216 (33%), Gaps = 25/216 (11%)
Query: 20 VSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHGWITAEYGMLPRSTGNRVK 75
++K+ +G V F DT ++ TA +K M+ A G +P + R
Sbjct: 8 LAKFTDGCATVTFKDTTVMATAVSSDKGGMYSGFVPLTVSFQQKAAALGRIPLNFLRR-- 65
Query: 76 REAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWV 135
Q I RMI R+LR + + QI+ + + + +I A
Sbjct: 66 ----ELGQNENEILISRMIDRSLRPLFPANFNNETQIVCNPLAMDGENFPDVLSINAASA 121
Query: 136 ALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTD 195
A + G V A+ G++ I++ D S ++ V
Sbjct: 122 A-------------LAVSNIPWNGPVGAVRVGLVDDNIIINPDKNLLSKSSLNLVVVSKA 168
Query: 196 SGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231
++V ++GS + + +I
Sbjct: 169 KHYVVMLEGSCSNILLN--DLLRAIKKGVSECQKII 202
>gi|308512717|gb|ADO33012.1| exosome complex exonuclease RRP41 [Biston betularia]
Length = 245
Score = 120 bits (301), Expect = 1e-25, Method: Composition-based stats.
Identities = 47/243 (19%), Positives = 91/243 (37%), Gaps = 18/243 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+RL GR+ N++R I V K +GS ++ G+T +L + + + +
Sbjct: 8 LRLDGRRPNELRRIRCKLGVFKQPDGSAYLEQGNTKVLAAVYGPHQASKSKMSNEGVVVN 67
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
+Y M STG R R + + + +AL + + QI + +V+Q
Sbjct: 68 CQYSMATFSTGERKNRPHGDRKSTE----MSLHLRQALTAAIKTELYPRSQIDVYVEVLQ 123
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADG + A +AL D + + +A P++D+ +
Sbjct: 124 ADGSCYCVCVNAATLALIDAGIPLRAYACAC----------SASMSWRDDAEPLLDVGHV 173
Query: 181 EDSTIDVDANFVM-TDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
E++ V +G I ++ S D+F +L+ A D+ + +
Sbjct: 174 EEAAGGVCLTVASLPSTGRIALLEMS---HRLHMDYFDIVLSRAMQGCRDIEVVLDKAVR 230
Query: 240 NEV 242
+
Sbjct: 231 EHL 233
>gi|238063392|ref|ZP_04608101.1| polyribonucleotide nucleotidyltransferase [Micromonospora sp. ATCC
39149]
gi|237885203|gb|EEP74031.1| polyribonucleotide nucleotidyltransferase [Micromonospora sp. ATCC
39149]
Length = 548
Score = 120 bits (301), Expect = 1e-25, Method: Composition-based stats.
Identities = 40/219 (18%), Positives = 72/219 (32%), Gaps = 14/219 (6%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
+R+ GR +R +S V GS L + G+T +L TL E+ + K
Sbjct: 340 VRIDGRGPRDIRPLSAEVGVLPRVHGSALFERGETQILGVTTLNMLRMEQSLDTLSPEKS 399
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P STG + + R+ G RAL V+ I
Sbjct: 400 KRYMHNYNFPPYSTGETGRVGSPKRREIGHGAL----AERALIPVLPAREEFPYAIRQVS 455
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+ + ++G T ++ + + L ++ + + G + D
Sbjct: 456 EALGSNGSTSMGSVCASTLGLLSAGVPLKAPVAGIAMGLISDE-----VDGKTQYVTLTD 510
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDH 215
+ ED+ D+D T + +Q + D
Sbjct: 511 ILGAEDAFGDMDFKVAGTRDF-VTALQLDTKLDGIPSDV 548
Score = 96.1 bits (237), Expect = 4e-18, Method: Composition-based stats.
Identities = 42/248 (16%), Positives = 77/248 (31%), Gaps = 39/248 (15%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKHGWITAEYGML 66
REI+ + +++ A GS + + G+T +L+ T E+ + G +
Sbjct: 23 REITFSTGRLARQAAGSVVAQLGETVVLSATTAGKQPKEQFDFFPLTVDVEERMYAAGRI 82
Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
P S R GR + R+I R LR Q++ +
Sbjct: 83 PGSFFRR------EGRPSEDAILTCRLIDRPLRPSFVKGLRNEVQVVETILALDPQHPYD 136
Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
AI A ++ G + A + G + + E +
Sbjct: 137 VVAINAASMST-------------KLSGLPFSGPIGATRMAHVDGQWVAFPTHEELARAT 183
Query: 187 VDANFVMT----DSGHIVEVQGSAERATF----------SQDHFFAMLNLAKDRIADLIK 232
D I+ V+ A T +++ + L AK I +L +
Sbjct: 184 FDMVVAGRALADGDVAIMMVEAEATEHTVKLVADGAPAPTEEVVASGLEAAKPAIRELCR 243
Query: 233 LQKDVISN 240
Q V++
Sbjct: 244 AQ-SVLAE 250
>gi|332226543|ref|XP_003262449.1| PREDICTED: LOW QUALITY PROTEIN: polyribonucleotide
nucleotidyltransferase 1, mitochondrial-like [Nomascus
leucogenys]
Length = 778
Score = 120 bits (301), Expect = 2e-25, Method: Composition-based stats.
Identities = 46/230 (20%), Positives = 79/230 (34%), Gaps = 17/230 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE--------EKVPMWIRN 53
R GR +R +S + K GS L + G T +L T T + ++V I
Sbjct: 358 RCDGRDLTSLRNVSCEVDMFKTLHGSALFQRGQTQVLCTVTFDSLESGIKSDQVITAING 417
Query: 54 TKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQII 113
K Y P +T K ++ R+ G +AL V+ I
Sbjct: 418 IKDKNFMLHYEFPPYATNEIGKVTGLNRRELGHGAL----AEKALYPVIPRDFPF--TIR 471
Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP 173
+ +V++++G + A+ G +AL D + + V K +
Sbjct: 472 VTSEVLESNGSSSMASACGGSLALMDSGVPISSPVAGVAVGLVTKTDP--EKGEIEDYRL 529
Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLA 223
+ D+ ED D+D T+ G I +Q + + A
Sbjct: 530 LTDILGIEDYNGDMDFKIAGTNKG-ITALQADIKLPGIPIKIVMEAIQQA 578
Score = 75.7 bits (184), Expect = 6e-12, Method: Composition-based stats.
Identities = 41/218 (18%), Positives = 78/218 (35%), Gaps = 25/218 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTA---TLEEKVPMWIRNTKHGWITAEYGMLP 67
R++ ++ ++++A+GS +V+ GDT ++ TA T + A G +P
Sbjct: 54 RKLEISSGKLARFADGSAVVQSGDTAVMVTAVSKTKPSPSQFMPLVVDYRQKAAAAGRIP 113
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
+ R + R+I R++R + Q++ + +
Sbjct: 114 TNYLRREIGT------SDKEILTSRIIDRSIRPLFPAGYFYDTQVLCNLLAVDGVNEPDV 167
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
AI GA VA G V A+ G++ G +V+ E S+ +
Sbjct: 168 LAINGASVA-------------LSLSDIPWNGPVGAVRIGIIDGECVVNPTRKEMSSSTL 214
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKD 225
+ IV ++ SAE Q F + +
Sbjct: 215 NLVVAGAPKSQIVMLEASAEN--ILQQDFCHAIKVGVK 250
>gi|261838537|gb|ACX98303.1| polynucleotide phosphorylase [Helicobacter pylori 51]
Length = 688
Score = 120 bits (301), Expect = 2e-25, Method: Composition-based stats.
Identities = 42/248 (16%), Positives = 80/248 (32%), Gaps = 24/248 (9%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRN------T 54
+R R ++R I + + A S L G T L L
Sbjct: 313 IRPDKRALEEVRPILIESGLLPMAHSSILFTRGQTQSLVVGVLGTDNDAQTHESLEHKAP 372
Query: 55 KHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIII 114
Y P G A S R+ G RAL + + + I +
Sbjct: 373 IKERFMFHYNFPPFCVGEASSIGATSRRELGHGNL----AKRALETSIKNK---EQVIRL 425
Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPI 174
++++++G + A++ +AL+ + D + V +G AI
Sbjct: 426 VSEILESNGSSSMASVCAGSLALYASGVEIYDLVAGVAMGMVSEGQDHAILSD------- 478
Query: 175 VDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
+ ED+ D+D G I +Q + + + + L AK ++K+
Sbjct: 479 --ISGLEDTEGDMDFKIAGNLEG-ITAMQMDTKMSGIPLEVLYQALLQAKKAREHILKIM 535
Query: 235 KDVISNEV 242
+ ++
Sbjct: 536 HEA-KEKI 542
Score = 64.1 bits (154), Expect = 2e-08, Method: Composition-based stats.
Identities = 32/224 (14%), Positives = 68/224 (30%), Gaps = 26/224 (11%)
Query: 20 VSKYAEGSCLVKFGDTHLLTTATLEEKV---PMWIRNTKHGWITAEYGMLPRSTGNRVKR 76
V+K A S + + G T +L + +E + + + G +P R
Sbjct: 20 VAKQATSSLMYRLGKTIILASVCVEREPVSEDFLPLVVQFLEKSYAAGKIPGGFVKR--- 76
Query: 77 EAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVA 136
GR R+I R LR + QI + + + +A+ A A
Sbjct: 77 ---EGRAQDFEILTSRLIDRTLRPLFPKDYRYPTQITLMVLSHDIENDLQVSALNAASAA 133
Query: 137 LHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDS 196
L V+A + +++ + + +D T
Sbjct: 134 LF-------------LSHIAPIKSVSACRIARIDNEFLINPNTSLLNQSSLDLFVSGTKE 180
Query: 197 GHIVEVQGSAER---ATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
+ ++ + + L LA+ + + L +++
Sbjct: 181 -SLNMIEMRSLGQQLNALEEPLMLKALELAQKSLKETCTLYEEI 223
>gi|15920654|ref|NP_376323.1| exosome complex RNA-binding protein Rrp42 [Sulfolobus tokodaii str.
7]
gi|29336897|sp|Q975G9|ECX2_SULTO RecName: Full=Probable exosome complex exonuclease 2
gi|15621437|dbj|BAB65432.1| 275aa long conserved hypothetical protein [Sulfolobus tokodaii str.
7]
Length = 275
Score = 120 bits (300), Expect = 2e-25, Method: Composition-based stats.
Identities = 60/255 (23%), Positives = 95/255 (37%), Gaps = 23/255 (9%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+RL GR+ + R IS+T +K AEGS LVK GDT +L LEE+ P + G +
Sbjct: 27 IRLDGRKNSDYRPISVTLNYAKKAEGSALVKLGDTMVLAGVKLEEEEP-FPDTPNQGNLV 85
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSA--------LGSRQI 112
+LP + G + E+ R++ R+LR +
Sbjct: 86 VNVELLPLAYETFEP-----GPPDENAIELARVVDRSLRDSKAVDLSKLVIIPGKKVWTA 140
Query: 113 IIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQ--------VLKGHVAAI 164
+D V+ G A A AL++ + + V +
Sbjct: 141 WVDVYVLDYGGNVLDACTLAAVAALYNTKLPKVEIEGDNVKIIKEEKTDVTPIAYPVVTV 200
Query: 165 SCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAK 224
+ + Y +VD E+S DV +F G IV +Q S + S +LA+
Sbjct: 201 TVAKIGKYLVVDPSLDEESIADVKISFSYVQDGRIVGMQKS-NFGSLSLQEVDVAESLAR 259
Query: 225 DRIADLIKLQKDVIS 239
L + K I+
Sbjct: 260 SASQKLFEELKKQIN 274
>gi|320335008|ref|YP_004171719.1| ribonuclease PH [Deinococcus maricopensis DSM 21211]
gi|319756297|gb|ADV68054.1| ribonuclease PH [Deinococcus maricopensis DSM 21211]
Length = 236
Score = 120 bits (300), Expect = 2e-25, Method: Composition-based stats.
Identities = 88/235 (37%), Positives = 126/235 (53%), Gaps = 4/235 (1%)
Query: 6 RQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGM 65
R + R + +TR V+ +AEGS L+ G T +L T T++ KVP +R K GW+ AEY M
Sbjct: 5 RPTTEPRPLHVTRGVNMHAEGSALLHLGRTQVLATVTVDPKVPPHMRGKKTGWLMAEYSM 64
Query: 66 LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125
+PR+T +R R+ GR EIQR++GRA R+ VDL R +++DCDV+QADGGT
Sbjct: 65 MPRATQDRTPRDRNLS--NGRRHEIQRLLGRAFRATVDLRHFRDRTLVVDCDVLQADGGT 122
Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185
R A++ + AL D + L V A S G++ G VDLDY ED
Sbjct: 123 RVASVLAGYAALWDYADRLIRT--GKLSEWPLLHEVGACSVGLVGGEVRVDLDYLEDVQA 180
Query: 186 DVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
+ D N V T SG ++E QG AE A + + +L D L+ + ++
Sbjct: 181 EADLNVVATSSGLLIEAQGGAEGAPIAPGVYEQLLRAGLDGTRTLLARVHEDLAR 235
>gi|161527940|ref|YP_001581766.1| exosome complex exonuclease 1 [Nitrosopumilus maritimus SCM1]
gi|259645400|sp|A9A5C9|ECX1_NITMS RecName: Full=Probable exosome complex exonuclease 1
gi|160339241|gb|ABX12328.1| exosome complex exonuclease 1 [Nitrosopumilus maritimus SCM1]
Length = 244
Score = 120 bits (300), Expect = 2e-25, Method: Composition-based stats.
Identities = 66/242 (27%), Positives = 102/242 (42%), Gaps = 23/242 (9%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKV-PMWIRNTKHGWIT 60
R GR ++ R I + K A+GS ++FGD +L V P + +T G +
Sbjct: 17 RCDGRTVDEPRRIMIKAGGLKNADGSSYIEFGDNKILVGVFGPRDVHPKHMSDTDTGILR 76
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
Y M P S G R + R EI ++I AL V L + + +V+Q
Sbjct: 77 VRYHMEPFSVGERK-----NPAPSRREIEISKVIKEALEPAVMLEKFPRTAVDVFIEVLQ 131
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTR AA+T A VAL D M D VAAI+ G + I+D++
Sbjct: 132 ADGGTRCAALTAASVALADAGIPMRD-------------MVAAIAAGKVADTVILDVNNE 178
Query: 181 EDSTIDVDANF-VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
ED D M + I +Q + + + + + D + +LQK ++
Sbjct: 179 EDQAGQADMPIGYMPNLEKITLLQLDG---VLTPEEYKKCIQVGVDGCKLVYELQKKALN 235
Query: 240 NE 241
++
Sbjct: 236 DK 237
>gi|108563579|ref|YP_627895.1| polynucleotide phosphorylase/polyadenylase [Helicobacter pylori
HPAG1]
gi|123373705|sp|Q1CS51|PNP_HELPH RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|107837352|gb|ABF85221.1| polynucleotide phosphorylase [Helicobacter pylori HPAG1]
Length = 688
Score = 120 bits (300), Expect = 2e-25, Method: Composition-based stats.
Identities = 42/248 (16%), Positives = 81/248 (32%), Gaps = 24/248 (9%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRN------T 54
+R R ++R I + + A S L G T L L
Sbjct: 313 IRPDKRALEEVRPILIESDLLPMAHSSILFTRGQTQSLVVGVLGTDNDAQTHESLEHKAP 372
Query: 55 KHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIII 114
Y P G A S R+ G RAL + + + I +
Sbjct: 373 IKERFMFHYNFPPFCVGEASSIGAASRRELGHGNL----AKRALETSIKNK---EQVIRL 425
Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPI 174
++++++G + A++ +AL+ + D + V +G AI
Sbjct: 426 VSEILESNGSSSMASVCAGSLALYASGVEIHDLVAGVAMGMVSEGQDHAILSD------- 478
Query: 175 VDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
+ ED+ D+D G I +Q + + + + L AK+ ++K+
Sbjct: 479 --ISGLEDAEGDMDFKIAGNLEG-ITAMQMDTKMSGIQLEILYQALLQAKEARKHILKIM 535
Query: 235 KDVISNEV 242
+ ++
Sbjct: 536 HEA-KEKI 542
Score = 63.3 bits (152), Expect = 3e-08, Method: Composition-based stats.
Identities = 35/224 (15%), Positives = 67/224 (29%), Gaps = 26/224 (11%)
Query: 20 VSKYAEGSCLVKFGDTHLLTTATLEEKV---PMWIRNTKHGWITAEYGMLPRSTGNRVKR 76
V K A S L + G T +L + +E + + + G +P R
Sbjct: 20 VVKQATSSLLYRLGKTIILASVCVEREPVSEDFLPLVVQFLEKSYAAGKIPGGFVKR--- 76
Query: 77 EAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVA 136
GR R+I R LR + QI + + + +A+ A A
Sbjct: 77 ---EGRAQDFEILTSRLIDRTLRPLFPKDYRYPTQITLMVLSHDIENDLQVSALNAASAA 133
Query: 137 LHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDS 196
L V+A + I++ + + +D T
Sbjct: 134 LFLAHIAPIKS-------------VSACRIARIGNEFIINPNTSLLNQSSLDLFVSGTKE 180
Query: 197 GHIVEVQGSAER---ATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
+ ++ + + L LA+ + + L ++V
Sbjct: 181 -SLNMIEMRSLGQQLNALEEPLMLKALELAQKSLKETCTLYEEV 223
>gi|255513309|gb|EET89575.1| 3' exoribonuclease [Candidatus Micrarchaeum acidiphilum ARMAN-2]
Length = 246
Score = 120 bits (300), Expect = 2e-25, Method: Composition-based stats.
Identities = 56/241 (23%), Positives = 106/241 (43%), Gaps = 22/241 (9%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEK-VPMWIRNTKHGWIT 60
RL GR N++R + + + A GS +++G+ +L ++ P + +T I
Sbjct: 16 RLDGRDFNELRPLKIEAGILANANGSAYLEWGNNKVLAAVYGPKEATPRHLADTNKAIIK 75
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
Y M P S+ + R+ EI ++ +VV L +I I +++Q
Sbjct: 76 CRYSMAPFSS----MGDHGRSGPNRRAIEISKVTKEVFENVVMLEEFPGSEIEIFIEILQ 131
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
+DGGTR A IT A VAL + H++D V A+S G + + ++D++
Sbjct: 132 SDGGTRAAGITAAAVALANAGIHVKD-------------MVYAVSAGRIDEHVVIDVNMI 178
Query: 181 EDSTIDVDANF-VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
ED+ D D + ++ +Q F+++ F + + + + K+Q+D +
Sbjct: 179 EDNYSDADMPVSISPKDNSVLLLQMDG---GFTKEQFGEAMKMILESGKVISKVQRDALK 235
Query: 240 N 240
Sbjct: 236 R 236
>gi|20090627|ref|NP_616702.1| exosome complex RNA-binding protein Rrp42 [Methanosarcina
acetivorans C2A]
gi|29336812|sp|Q8TGX5|ECX2_METAC RecName: Full=Probable exosome complex exonuclease 2
gi|19915669|gb|AAM05182.1| tRNA nucleotidyltransferase [Methanosarcina acetivorans C2A]
Length = 266
Score = 119 bits (299), Expect = 2e-25, Method: Composition-based stats.
Identities = 49/247 (19%), Positives = 91/247 (36%), Gaps = 15/247 (6%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R GR R++ L V AEGS V G+T +L L+ P + + G I
Sbjct: 25 RQDGRGFKDFRDLKLETNVIVKAEGSAKVTLGNTQVLVGVKLQTGTP-FPDSQDEGVIIT 83
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGR------ALRSVVDLSALGS--RQII 113
+ P ++ G + E+ R++ R A+ +G +
Sbjct: 84 NLELNPIASPEFEP-----GPPREEAIEMARVVDRGIRESGAIDIKKLCITVGESVWIVF 138
Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP 173
ID V+ DG A+ A AL + E + +K I+ +
Sbjct: 139 IDVHVLNDDGNIIDASCLAAIAALMTTMVPNEQQGLGEDVPLAMKEMPVGITIAKIGSKL 198
Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
+VD E++ + V + G + +Q + ++ F ++LA ++ A+L L
Sbjct: 199 MVDPSLDEEAVCETKLTIVSSSDGSVAGMQKMG-ISPLTEAELFEAIDLALEKAAELRGL 257
Query: 234 QKDVISN 240
+ ++
Sbjct: 258 YLEGLAK 264
>gi|317014601|gb|ADU82037.1| polynucleotide phosphorylase/polyadenylase [Helicobacter pylori
Gambia94/24]
Length = 688
Score = 119 bits (299), Expect = 2e-25, Method: Composition-based stats.
Identities = 43/248 (17%), Positives = 81/248 (32%), Gaps = 24/248 (9%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT------ 54
+R R ++R IS+ + A S L G T L L
Sbjct: 313 IRPDKRALEEVRPISIESNLLPMAHSSILFTRGQTQSLVVGVLGTDNDAQTHENLEHKAP 372
Query: 55 KHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIII 114
Y P G A S R+ G RAL + + + I +
Sbjct: 373 IKERFMFHYNFPPFCVGEASSIGATSRRELGHGNL----AKRALETSIKNK---EQVIRL 425
Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPI 174
++++++G + A++ +AL+ + D + V +G AI
Sbjct: 426 VSEILESNGSSSMASVCAGSLALYASGVEIHDLVAGVAMGMVSEGQDHAILSD------- 478
Query: 175 VDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
+ ED+ D+D G I +Q + + + + L AK ++K+
Sbjct: 479 --ISGLEDAEGDMDFKIAGNVEG-ITAMQMDTKMSGIRLEVLYQALLQAKRARKHILKIM 535
Query: 235 KDVISNEV 242
+ ++
Sbjct: 536 HEA-KEKI 542
Score = 63.7 bits (153), Expect = 2e-08, Method: Composition-based stats.
Identities = 33/224 (14%), Positives = 65/224 (29%), Gaps = 26/224 (11%)
Query: 20 VSKYAEGSCLVKFGDTHLLTTATLEEKV---PMWIRNTKHGWITAEYGMLPRSTGNRVKR 76
V+K A S + + G T +L + E + + + G +P R
Sbjct: 20 VAKQATSSLMYRLGKTLILASVCTEREPVSEDFLPLVVQFLEKSYAAGKIPGGFVKR--- 76
Query: 77 EAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVA 136
GR R+I R LR + QI + + + +A+ A A
Sbjct: 77 ---EGRAQDFEILTSRLIDRTLRPLFPKDYRYPTQITLMVLSHDIENDLQVSALNAASAA 133
Query: 137 LHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDS 196
L V A + I++ + +D T
Sbjct: 134 LFLAHIAPIKS-------------VGACRIARVDNEFIINPSASLLNQSSLDLFVSGTKE 180
Query: 197 GHIVEVQGSA---ERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
+ ++ + + + L LA+ + + L ++
Sbjct: 181 -SLNMIEMRSLGQKLNALEEPLMLEALELAQKSLKETCALYEEA 223
>gi|270010551|gb|EFA06999.1| hypothetical protein TcasGA2_TC009968 [Tribolium castaneum]
Length = 251
Score = 119 bits (299), Expect = 2e-25, Method: Composition-based stats.
Identities = 49/244 (20%), Positives = 88/244 (36%), Gaps = 20/244 (8%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVP--MWIRNTKHGW 58
+R GR+ +++R I V +GS ++ G T +L +V
Sbjct: 13 LRQDGRRADELRRIRCKLGVFTEPDGSAYLEQGLTKVLAAVYGPHQVRGSRSKAQHDSAV 72
Query: 59 ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDV 118
+ ++ M STG R K R +S EI + +AL + + + QI + +V
Sbjct: 73 VNCQFSMAVFSTGERKK----RPRGDRKSTEISIHLRQALTAAIKVELYPWTQIDVYVEV 128
Query: 119 IQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLD 178
+ ADGG A + A +AL D +++ S +
Sbjct: 129 LHADGGIYPACVNAATLALIDAGIPLKEYVCACTASLANNDVP-----------LLDVSH 177
Query: 179 YGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
E + SG IV ++ S F DH +L+ A D+ + + +
Sbjct: 178 QEEIIGGPTLTVAALPMSGKIVLMEMS---QRFHVDHLQKVLDKALQGCKDIKSILDEAV 234
Query: 239 SNEV 242
+ +
Sbjct: 235 KSHI 238
>gi|115653057|ref|XP_788673.2| PREDICTED: similar to polyribonucleotide nucleotidyltransferase 1
[Strongylocentrotus purpuratus]
gi|115929402|ref|XP_001192933.1| PREDICTED: similar to polyribonucleotide nucleotidyltransferase 1
[Strongylocentrotus purpuratus]
Length = 981
Score = 119 bits (299), Expect = 2e-25, Method: Composition-based stats.
Identities = 44/245 (17%), Positives = 87/245 (35%), Gaps = 15/245 (6%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE------EKVPMWIRNTK 55
R GR+ ++MR+I+ + + K GS L + G T + T T + P+W + +
Sbjct: 538 RCDGREADEMRDITCSVDLYKPLHGSALFQRGQTQVFCTVTFDSIESALRADPVWQEDIR 597
Query: 56 HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115
Y P +T + ++ R+ G + LR VV I +
Sbjct: 598 EKNFMLHYEFPPYATNETGRTGGINRRELGHGAL----AEKGLRPVVPSDYPF--TIRLT 651
Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIV 175
+V++++G + A + G +AL D + + + + I + +
Sbjct: 652 SEVLESNGSSSMATVCGGSLALMDAGVPVSHPVAGVAIGVITETEPDDI-FTIKDHRIVT 710
Query: 176 DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
DL ED D+D + G I +Q + + + ++ +
Sbjct: 711 DLLGIEDYMGDMDMKLAGSKKG-ITALQTDVK-VPLPMKIIVEAIQAGTAAKSKILNIMA 768
Query: 236 DVISN 240
I
Sbjct: 769 SSIRK 773
Score = 73.3 bits (178), Expect = 3e-11, Method: Composition-based stats.
Identities = 34/233 (14%), Positives = 76/233 (32%), Gaps = 25/233 (10%)
Query: 13 EISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMW---IRNTKHGWITAEYGMLPR 68
+ L+ ++K A+G + GDT ++ TA ++ + A G +P
Sbjct: 235 PLILSTGELAKLADGCATAQIGDTTVMVTAVSKKNSSSPGFLPLTVDYRQKAAAAGRIPT 294
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
+ R + + RMI R++R + Q++ + +
Sbjct: 295 NHLRRERGV------TDQEILTSRMIDRSIRPLFPKGFFYDTQVMCNLLAVDGLQDPGVI 348
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
+I GA A G + A+ G++ +++ + ++
Sbjct: 349 SINGASAA-------------LALSDVPWNGPIGAVRVGLIDEEVMINPTRLDMRRSTIN 395
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
T ++V V+ SA+ Q F L +++ + +
Sbjct: 396 MVVAGTKKSNLVMVEASADNVL--QTDFLKALKAGLKETQIIVRSIEKLAREH 446
>gi|291519474|emb|CBK74695.1| polyribonucleotide nucleotidyltransferase [Butyrivibrio
fibrisolvens 16/4]
Length = 693
Score = 119 bits (299), Expect = 2e-25, Method: Composition-based stats.
Identities = 37/245 (15%), Positives = 71/245 (28%), Gaps = 18/245 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL-----EEKVPMWIRNTKH 56
R GR+ Q+R ++ + GS + G T + TL +K+
Sbjct: 311 RPDGREITQIRPLAAEVDIIPRVHGSSMFTRGQTQICDVVTLAPLSEAQKIDGLDAFVTE 370
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y S G R+ G RAL V+ I
Sbjct: 371 KRYMHHYNFPAYSVGETKPSRGPGRREIGHGAL----AERALLPVLPTPEEFPYAIRAVS 426
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+ +++G T A+ + ++L ++ V + D
Sbjct: 427 ETFESNGSTSMASTCASCMSLMAAGVPIKAMVAGISCGLV-------TGDTDDDFVLLTD 479
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK-LQK 235
+ ED D+D T G I +Q + ++ + ++ ++
Sbjct: 480 IQGLEDFFGDMDFKVTGTKEG-ITAIQMDIKIHGLTRPIVEGAIARCREARFFIMDNCMS 538
Query: 236 DVISN 240
I+
Sbjct: 539 KAIAE 543
Score = 94.1 bits (232), Expect = 1e-17, Method: Composition-based stats.
Identities = 40/234 (17%), Positives = 73/234 (31%), Gaps = 27/234 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----HGWITAEYGML 66
R + + V+ A G+ +++GDT +L+TAT +K I T G +
Sbjct: 11 RTLRVDIGRVAAQANGAAFIQYGDTTVLSTATASDKPRDGIDFFPLSVEFEEKTYAVGKI 70
Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
P R G+ S R+I R +R + + +
Sbjct: 71 PGGFNKR------EGKASENSVLTSRVIDRPMRPLFPKDYRNDVTLNNMVMAVDPQCRPE 124
Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
A+ GA +A G A GM+ G IV+ + D
Sbjct: 125 LVAMLGAAIATC-------------ISDIPFDGPCAMTQMGMIDGEFIVNPSQEQWDKGD 171
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
+ T ++ ++ A +D + D +I +++
Sbjct: 172 LKLTVASTRE-KVIMIEAGANI--IPEDKMIEAIYKCHDVNQTVIAFIDEMVKE 222
>gi|170039801|ref|XP_001847711.1| polyribonucleotide nucleotidyltransferase 1, mitochondrial [Culex
quinquefasciatus]
gi|167863390|gb|EDS26773.1| polyribonucleotide nucleotidyltransferase 1, mitochondrial [Culex
quinquefasciatus]
Length = 759
Score = 119 bits (299), Expect = 3e-25, Method: Composition-based stats.
Identities = 46/246 (18%), Positives = 86/246 (34%), Gaps = 16/246 (6%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEK--------VPMWIRN 53
R GR + +R+IS + + K GS L + G T + T L+ + +
Sbjct: 359 RCDGRYLDDLRKISSSVNMHKPLHGSALFQRGQTQVFATVALDSQESALKLDPITSLDMG 418
Query: 54 TKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQII 113
K Y P +TG K V R+ G + L ++ I
Sbjct: 419 VKSKNFFLHYEFPPYATGETGKIGPVGRREIGHGAL----AEKGLLPIIPND--NPFTIR 472
Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP 173
+ +V++++G + A + +AL D +++ + + + K +
Sbjct: 473 LTAEVLESNGSSSMATVCAGSMALMDAGIPVQEAAAGVAIGLMTKYENNDTKH-LQDYRI 531
Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
+ DL ED D+D T G + +Q + L A + ++ L
Sbjct: 532 LTDLLGIEDYLGDMDMKVAGTRRG-MTAIQADIKVPGIPLKVVMESLQKAMEARFKILDL 590
Query: 234 QKDVIS 239
+ IS
Sbjct: 591 MNESIS 596
Score = 78.0 bits (190), Expect = 1e-12, Method: Composition-based stats.
Identities = 33/237 (13%), Positives = 73/237 (30%), Gaps = 28/237 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTAT------LEEKVPMWIRNTKHGWITAEYG 64
R + ++ +++A+G +V GDT ++ TA + A G
Sbjct: 52 RVVRISSGKYARFADGCSVVTVGDTAVMVTAVARQKPAGGSNASFLPLVVDYRQKAAAAG 111
Query: 65 MLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGG 124
+P + R + R++ R++R + Q++ + I +
Sbjct: 112 RIPTNFLRREMG------PSEKEILAARLVDRSMRPLFPAEFRCDTQLVCNMLAIDSSNL 165
Query: 125 TRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDST 184
AI A A G V A+ G++ I++ E
Sbjct: 166 PDVQAINAASAA-------------LSLSDIPWNGPVGAVRVGLVDNEIIINPTRKELQL 212
Query: 185 IDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
+D T +V ++G +++ + +I + + +
Sbjct: 213 SALDLVVSATKQNLVVMLEGRGNI--VNENELRMAIKKGTQEAQLIINGIEKLQKSH 267
>gi|18313178|ref|NP_559845.1| exosome complex exonuclease Rrp41 [Pyrobaculum aerophilum str. IM2]
gi|29336868|sp|Q8ZVM9|ECX1_PYRAE RecName: Full=Probable exosome complex exonuclease 1
gi|18160692|gb|AAL64027.1| 3' exoribonuclease family protein [Pyrobaculum aerophilum str. IM2]
Length = 246
Score = 119 bits (299), Expect = 3e-25, Method: Composition-based stats.
Identities = 62/243 (25%), Positives = 107/243 (44%), Gaps = 22/243 (9%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKV-PMWIRNTKHGWI 59
+R GR +QMRE+ + V A+GS +V +G T + ++ P + G +
Sbjct: 13 VRADGRTPDQMREVKIAVGVVSNADGSAMVSYGATTAVAAVYGPREMHPRHLSLPDRGVM 72
Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119
Y M P ST + K S R+ I +++ AL + L +I + +++
Sbjct: 73 RVRYHMAPFSTKDERKSPTPSRREIE----ISKILREALEPAIVLEQYPRSRIDVFVEIL 128
Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179
QADG TR A++T A +AL D +M D V +S G++ G ++DL+
Sbjct: 129 QADGSTRVASLTAASLALADAGIYMRDL-------------VVGVSVGLVDGTVVLDLNG 175
Query: 180 GEDSTIDVDANF-VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
ED + D M + +Q +++D F LNLA + ++ +D +
Sbjct: 176 LEDQYGEGDLPLGYMPNLKRFTLLQLDG---AWTRDMFLQALNLAVRGAEYVYQIARDAL 232
Query: 239 SNE 241
N+
Sbjct: 233 KNK 235
>gi|294464242|gb|ADE77635.1| unknown [Picea sitchensis]
Length = 243
Score = 119 bits (299), Expect = 3e-25, Method: Composition-based stats.
Identities = 62/242 (25%), Positives = 106/242 (43%), Gaps = 22/242 (9%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPM-WIRNTKHGWI 59
+RL GR+ +MR++ V A+GS + + G+T ++ +V + +
Sbjct: 9 LRLDGRRPLEMRQLHAQLGVVDKADGSAIFEMGNTKVIAAVYGPHEVQNKNQQLPDQALV 68
Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119
EY M STG+R +R R I +I + + + + + QI I V+
Sbjct: 69 RCEYSMANFSTGDRPRRSKGDRRATE----ISLVIRQTMEATILTHLMPRTQIDIFVQVL 124
Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179
QADGGTR+A I A +AL D M D V + + G L P++D++Y
Sbjct: 125 QADGGTRSACINAATLALADAGIPMCDL-------------VTSCAAGYLNSTPLLDMNY 171
Query: 180 GEDSTIDVDANF-VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
EDS D +MT + +Q ++ D F ++ LA + +++ +DV+
Sbjct: 172 MEDSAGGPDVAVGLMTKMDKLSLLQMDSK---LPMDIFETVMQLAIEGCKAIVRYIQDVL 228
Query: 239 SN 240
Sbjct: 229 LE 230
>gi|126459546|ref|YP_001055824.1| exosome complex exonuclease Rrp41 [Pyrobaculum calidifontis JCM
11548]
gi|254782536|sp|A3MUP1|ECX1_PYRCJ RecName: Full=Probable exosome complex exonuclease 1
gi|126249267|gb|ABO08358.1| ribosomal RNA-processing protein RRP41/SKI6 [Pyrobaculum
calidifontis JCM 11548]
Length = 246
Score = 119 bits (298), Expect = 3e-25, Method: Composition-based stats.
Identities = 58/243 (23%), Positives = 105/243 (43%), Gaps = 22/243 (9%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKV-PMWIRNTKHGWI 59
+R GR +QMRE+ + A+GS +V +G T + ++ P + G +
Sbjct: 13 LRADGRAPDQMREVQIQVGTVSNADGSAVVSYGATTAVAAVYGPREMHPRHLSLPDRGVM 72
Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119
Y M P ST + K S R+ I +++ AL V L +I + +++
Sbjct: 73 RVRYHMAPFSTKDERKSPTPSRREIE----ISKVLREALEPAVMLEQYPRSRIDVFIEIL 128
Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179
QADG TR A++T A +AL D +M D +S G++ G ++DL+
Sbjct: 129 QADGSTRVASLTAASLALADAGIYMRDLV-------------VGVSVGLVDGTVVLDLNG 175
Query: 180 GEDSTIDVDANF-VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
ED+ + D M + +Q ++++ F L LA + ++ ++ +
Sbjct: 176 LEDNYGEGDMPVGYMPNLRRFTLLQLDG---AWTREKFLEALGLAVKGAEYVYQVAREAL 232
Query: 239 SNE 241
N+
Sbjct: 233 KNK 235
>gi|217034082|ref|ZP_03439503.1| hypothetical protein HP9810_893g29 [Helicobacter pylori 98-10]
gi|216943477|gb|EEC22931.1| hypothetical protein HP9810_893g29 [Helicobacter pylori 98-10]
Length = 688
Score = 119 bits (298), Expect = 3e-25, Method: Composition-based stats.
Identities = 42/248 (16%), Positives = 80/248 (32%), Gaps = 24/248 (9%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRN------T 54
+R R ++R I + + A S L G T L L
Sbjct: 313 IRPDKRALEEVRPILIESGLLPMAHSSILFTRGQTQSLVVGVLGADNDAQTHESLEHKAP 372
Query: 55 KHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIII 114
Y P G A S R+ G RAL + + + I +
Sbjct: 373 IKERFMFHYNFPPFCVGEASSIGATSRRELGHGNL----AKRALETSIKNK---EQVIRL 425
Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPI 174
++++++G + A++ +AL+ + D + V +G AI
Sbjct: 426 VSEILESNGSSSMASVCAGSLALYASGVEIYDLVAGVAMGMVSEGQDHAILSD------- 478
Query: 175 VDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
+ ED+ D+D G I +Q + + + + L AK ++K+
Sbjct: 479 --ISGLEDAEGDMDFKIAGNLEG-ITAMQMDTKMSGIQLEVLYQALLQAKKAREHILKIM 535
Query: 235 KDVISNEV 242
+ ++
Sbjct: 536 HEA-KEKI 542
Score = 63.7 bits (153), Expect = 2e-08, Method: Composition-based stats.
Identities = 34/223 (15%), Positives = 69/223 (30%), Gaps = 24/223 (10%)
Query: 20 VSKYAEGSCLVKFGDTHLLTTATLEEKV---PMWIRNTKHGWITAEYGMLPRSTGNRVKR 76
V+K A S + + G T +L + E + + + G +P R
Sbjct: 20 VAKQATSSLMYRLGKTIILASVCTEREPVSEDFLPLVVQFLEKSYAAGKIPGGFVKR--- 76
Query: 77 EAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVA 136
GR R+I R LR + QI + + + +A+ A A
Sbjct: 77 ---EGRAQDFEILTSRLIDRTLRPLFPKDYRYPTQITLMVLSHDIENDLQVSALNAASAA 133
Query: 137 LHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDS 196
L V+A + I++ + + +D T
Sbjct: 134 LF-------------LSHIAPIKSVSACRIARIDNEFIINPNTSLLNQSSLDLFVSGTKE 180
Query: 197 G-HIVEVQGSA-ERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
+++E+ + + L LA+ + + L +++
Sbjct: 181 SLNMIEMHSLGQKLNALEEPLMLKALELAQKSLKETCTLYEEI 223
>gi|326422491|gb|EGD71888.1| 3' exoribonuclease [Candidatus Parvarchaeum acidophilus
ARMAN-5_'5-way FS']
Length = 236
Score = 119 bits (298), Expect = 3e-25, Method: Composition-based stats.
Identities = 55/240 (22%), Positives = 92/240 (38%), Gaps = 17/240 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKV-PMWIRNTKHGWIT 60
R R N++R + V A+GS + G+T + E+V P I G I
Sbjct: 5 RFDKRAFNELRPMEAETGVVPNAKGSARFRIGNTEAIAAVYGPEEVKPRHIEKVDRGVIV 64
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
+Y MLP S +R K R EI ++I AL + L + I + + Q
Sbjct: 65 CKYDMLPFSVPDRAKPGMDR-----RDIEISQVITNALNRAIILEDMPRAMINVRVYITQ 119
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
AD GTR A++T A +A D M D ++ +S +
Sbjct: 120 ADAGTRCASLTAASMACADAGLPMRDLVAAVAAGKIGDHVCLDLSKEEEDFH-------E 172
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
+ DV F + I+ +Q S+D ++ + K+ + +L+K+ +
Sbjct: 173 GEGATDVPIAF-LPSKNEILLLQLDGR---VSRDELKKVIEVGKEGAMKIYELEKEALKR 228
>gi|15806593|ref|NP_295308.1| ribonuclease PH [Deinococcus radiodurans R1]
gi|21759421|sp|Q9RU11|RNPH_DEIRA RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|6459349|gb|AAF11146.1|AE002002_4 ribonuclease PH [Deinococcus radiodurans R1]
Length = 246
Score = 119 bits (298), Expect = 3e-25, Method: Composition-based stats.
Identities = 90/232 (38%), Positives = 129/232 (55%), Gaps = 7/232 (3%)
Query: 5 GRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYG 64
GR R +S+ R V+ +A GS +K G T +L T TL++K +R K GW+TAEY
Sbjct: 11 GRDALTPRPVSVQRGVNPHAPGSAHLKMGRTEILATVTLDDKPAPHMRGKKEGWLTAEYS 70
Query: 65 MLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGG 124
MLPRST +R R Q GR EIQR++GRALRS +DL ++ + +DCDV+ ADGG
Sbjct: 71 MLPRSTTDRQAR--ERNLQNGRRHEIQRLLGRALRSSMDLRPFKNQTLYVDCDVLVADGG 128
Query: 125 TRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDST 184
TR A++ ALHD + + + +V AIS G++ VDLDY ED
Sbjct: 129 TRVASVLAGHAALHDFCDRLINS--GQLSEWPIVHNVGAISVGLIGDELRVDLDYEEDKV 186
Query: 185 IDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
D N + TD+G +VEVQG AE + D + +L+ +A + + ++
Sbjct: 187 ARADLNVIATDTGLLVEVQGGAELGPITVDEYTRLLSC---GVASVQDVMRE 235
>gi|160892563|ref|ZP_02073353.1| hypothetical protein CLOL250_00092 [Clostridium sp. L2-50]
gi|156865604|gb|EDO59035.1| hypothetical protein CLOL250_00092 [Clostridium sp. L2-50]
Length = 700
Score = 119 bits (298), Expect = 3e-25, Method: Composition-based stats.
Identities = 39/239 (16%), Positives = 72/239 (30%), Gaps = 10/239 (4%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL-EEKVPMWIRNTKHGWIT 60
R GR NQ+R ++ + GS + G T + TL I ++
Sbjct: 315 RPDGRAINQIRPLAAEVDIIPRVHGSAMFTRGQTQICDIVTLAPLSEIQKIDGLDENVVS 374
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
Y V VS G R + RAL V+ I + +
Sbjct: 375 KRYMHHYNFPSYSVGETKVSRGPGRREIGHGALAERALLPVLPSVEEFPYAIRAVSETFE 434
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
++G T A+ + ++L ++ V + D+
Sbjct: 435 SNGSTSMASTCASCMSLMAAGVPLKSMVAGISCGLV-------TGDTDDDYVVLTDIQGL 487
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK-LQKDVI 238
ED D+D T G I +Q + ++ + ++ ++ + I
Sbjct: 488 EDFFGDMDFKVTGTYKG-ITAIQMDIKIHGLTRPIVEEAIARTREARLFIMDGVMSSAI 545
Score = 87.6 bits (215), Expect = 1e-15, Method: Composition-based stats.
Identities = 39/245 (15%), Positives = 76/245 (31%), Gaps = 40/245 (16%)
Query: 1 MRLS-GRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK---- 55
+R+ GR V+ A G+ + +GDT +L+T T EK I
Sbjct: 17 LRVDIGR-------------VAAQANGAAFMHYGDTTVLSTITASEKPRDGIDFFPLSVE 63
Query: 56 HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115
+ G +P R G+ + R+I R +R + +
Sbjct: 64 YEEKMYAVGKIPGGFNKR------EGKASENAVLTSRVIDRPMRPLFPKDYRNDVTLNNL 117
Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIV 175
+ + A+ G+ +A G A GM+ G I+
Sbjct: 118 VTSVDPECRPELVAMLGSAIAT-------------AISDVPFCGPCAMTQVGMIDGEFII 164
Query: 176 DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
+ + D+ T + ++ ++ A +D + A D +I+
Sbjct: 165 NPSQKQWDEGDLKLTVASTST-KVIMIEAGANE--IPEDKMIEAIYKAHDVNLSIIEFIN 221
Query: 236 DVISN 240
++
Sbjct: 222 KMVEE 226
>gi|260804641|ref|XP_002597196.1| hypothetical protein BRAFLDRAFT_203413 [Branchiostoma floridae]
gi|229282459|gb|EEN53208.1| hypothetical protein BRAFLDRAFT_203413 [Branchiostoma floridae]
Length = 723
Score = 119 bits (297), Expect = 4e-25, Method: Composition-based stats.
Identities = 45/247 (18%), Positives = 85/247 (34%), Gaps = 16/247 (6%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE--------EKVPMWIRN 53
R GR +R+IS + K GS L + G T +L+T T + + + +
Sbjct: 316 RCDGRDMTSLRDISCDVDLYKPLHGSALFQRGQTQVLSTVTFDSKQASLKMDPIAEILGG 375
Query: 54 TKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQII 113
K Y P +T + + S R+ G AL+ VV I
Sbjct: 376 VKQKDFMLHYVFPPYATNETGRVSSNSRRELGHGAL----AENALKPVVPSDFPF--TIR 429
Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP 173
+ +V++++G + A+ +AL D + + V + + +
Sbjct: 430 LTAEVLESNGSSSMASACSGSLALMDAGVPISSPVAGVAIGLVTRTDPNNPT-EIQDYKL 488
Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
+ D+ ED D+D T G + +Q + A +D+I +
Sbjct: 489 LTDILGIEDYMGDMDFKMAGTKKG-VTALQADIKLPGLPLKIIMEATQQATMAKSDIINI 547
Query: 234 QKDVISN 240
++
Sbjct: 548 MNRALAK 554
Score = 86.8 bits (213), Expect = 2e-15, Method: Composition-based stats.
Identities = 41/238 (17%), Positives = 84/238 (35%), Gaps = 29/238 (12%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTA---TLEEKVPMWIRNTKHGWITAEYGMLP 67
R + ++ +++A+G +V+ GDT + TA T + A G +P
Sbjct: 12 RVMRISTGKFARFADGCAVVEIGDTSAMVTAVSRTRPSSAGFLPLTVDYRQKAAAAGRIP 71
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
+ R Q R + R+I R++R + + Q+I + +
Sbjct: 72 TTHLRR------ELAQTDREILVSRLIDRSIRPLFPAGYMYETQVISNLLAVDGVNDPDI 125
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
A+I GA A G + A+ G++ +++ + S +
Sbjct: 126 ASINGASTA-------------LALSDCPWNGPIGAVRVGIVDDEYVINPTRRQLSRSKL 172
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK----LQKDVISNE 241
+ + +V ++GSAE F + +I+ LQK++ +
Sbjct: 173 NLVVTGAERNLVVMLEGSAENVLLP--DFQRAIKTGIKETQKIIRGIQTLQKEIGKEK 228
>gi|48477466|ref|YP_023172.1| exosome complex exonuclease Rrp41 [Picrophilus torridus DSM 9790]
gi|48430114|gb|AAT42979.1| ribonuclease PH [Picrophilus torridus DSM 9790]
Length = 239
Score = 119 bits (297), Expect = 4e-25, Method: Composition-based stats.
Identities = 60/241 (24%), Positives = 106/241 (43%), Gaps = 22/241 (9%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+RL GR N+MR I +T V A+GS +++G ++ + E P +N +
Sbjct: 12 LRLDGRAFNEMRPIRITTGVVDNADGSAYIEWGANKIVVAVYVREAYPKHAQNIDKAIVK 71
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
A Y M S R + R+ EI ++I AL S + + L +I + +V++
Sbjct: 72 ARYNMAGFSVEERKRPG-----PDRRTMEISKLISEALESAIMVERLPRAEIDVYIEVLE 126
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
AD GTR A++T A VA+ D M+D + G G ++DL
Sbjct: 127 ADAGTRIASLTAASVAVADAGIPMKDL-------------PVGCTAGKANGKVVLDLSKD 173
Query: 181 EDSTIDVDANFVM-TDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
ED+ D D + SG I+ +Q + S+ + + + ++ ++Q++ +
Sbjct: 174 EDNYGDADIPMAILPKSGKIILLQLDGD---VSEQELEEAMEMMLGAMKNISRIQREALM 230
Query: 240 N 240
N
Sbjct: 231 N 231
>gi|15645827|ref|NP_208005.1| polynucleotide phosphorylase/polyadenylase [Helicobacter pylori
26695]
gi|81341641|sp|O25812|PNP_HELPY RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|2314375|gb|AAD08258.1| polynucleotide phosphorylase (pnp) [Helicobacter pylori 26695]
Length = 688
Score = 119 bits (297), Expect = 4e-25, Method: Composition-based stats.
Identities = 42/248 (16%), Positives = 81/248 (32%), Gaps = 24/248 (9%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRN------T 54
+R R ++R I + + A S L G T L L
Sbjct: 313 IRPDKRALEEVRPILIESDLLPMAHSSILFTRGQTQSLVVGVLGTDNDAQTHESLEHKAP 372
Query: 55 KHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIII 114
Y P G A S R+ G RAL + + + I +
Sbjct: 373 IKERFMFHYNFPPFCVGEASSIGAASRRELGHGNL----AKRALETSIKNK---EQVIRL 425
Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPI 174
++++++G + A++ +AL+ + D + V +G AI
Sbjct: 426 VSEILESNGSSSMASVCAGSLALYASGVEIYDLVAGVAMGMVSEGQDHAILSD------- 478
Query: 175 VDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
+ ED+ D+D G I +Q + + + + L AK+ ++K+
Sbjct: 479 --ISGLEDAEGDMDFKIAGNLEG-ITAMQMDTKMSGIKLEILYQALLQAKEARKHILKIM 535
Query: 235 KDVISNEV 242
+ ++
Sbjct: 536 HEA-KEKI 542
Score = 64.9 bits (156), Expect = 1e-08, Method: Composition-based stats.
Identities = 34/224 (15%), Positives = 68/224 (30%), Gaps = 26/224 (11%)
Query: 20 VSKYAEGSCLVKFGDTHLLTTATLEEKV---PMWIRNTKHGWITAEYGMLPRSTGNRVKR 76
V+K A S L + G T +L + +E + + + G +P R
Sbjct: 20 VAKQATSSLLYRLGKTIILASVCVEREPVSEDFLPLVVQFLEKSYAAGKIPGGFVKR--- 76
Query: 77 EAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVA 136
GR R+I R LR + QI + + + +A+ A A
Sbjct: 77 ---EGRAQDFEILTSRLIDRTLRPLFPKDYRYPTQITLMVLSHDIENDLQVSALNAASAA 133
Query: 137 LHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDS 196
L V+A + I++ + +D T
Sbjct: 134 LFLAHIAPIKS-------------VSACRIARMDNEFIINPSASLLNQSSLDLFVSGTKE 180
Query: 197 GHIVEVQGSA---ERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
+ ++ + + + L LA+ + + L +++
Sbjct: 181 -SLNMIEMRSLGQKLNALEEPLMLEALELAQKSLEETCTLYEEI 223
>gi|325998073|gb|ADZ50281.1| Polyribonucleotide nucleotidyltransferase [Helicobacter pylori
2017]
Length = 688
Score = 119 bits (297), Expect = 4e-25, Method: Composition-based stats.
Identities = 43/248 (17%), Positives = 81/248 (32%), Gaps = 24/248 (9%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT------ 54
+R R ++R IS+ + A S L G T L L
Sbjct: 313 IRPDKRALEEVRPISIESNLLPMAHSSILFTRGQTQSLVVGVLGTDNDAQTHENLEHKAP 372
Query: 55 KHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIII 114
Y P G A S R+ G RAL + + + I +
Sbjct: 373 IKERFMFHYNFPPFCVGEASSIGATSRRELGHGNL----AKRALETSIKNK---EQVIRL 425
Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPI 174
++++++G + A++ +AL+ + D + V +G AI
Sbjct: 426 VSEILESNGSSSMASVCAGSLALYASGVEIHDLVAGVAMGMVSEGQDHAILSD------- 478
Query: 175 VDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
+ ED+ D+D G I +Q + + + + L AK ++K+
Sbjct: 479 --ISGLEDAEGDMDFKIAGNVEG-ITAMQMDTKMSGIRLEVLYQALLQAKRAREHILKIM 535
Query: 235 KDVISNEV 242
+ ++
Sbjct: 536 HEA-KEKI 542
Score = 65.3 bits (157), Expect = 7e-09, Method: Composition-based stats.
Identities = 33/224 (14%), Positives = 68/224 (30%), Gaps = 26/224 (11%)
Query: 20 VSKYAEGSCLVKFGDTHLLTTATLEEKV---PMWIRNTKHGWITAEYGMLPRSTGNRVKR 76
V+K A S + + G T +L + +E + + + G +P R
Sbjct: 20 VAKQATSSLMYRLGKTLILASVCVEREPVSEDFLPLVVQFLEKSYAAGKIPGGFVKR--- 76
Query: 77 EAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVA 136
GR R+I R LR + QI + + + +A+ A A
Sbjct: 77 ---EGRAQDFEILTSRLIDRTLRPLFPKDYRYPTQITLMVLSHDIENDLQVSALNAASAA 133
Query: 137 LHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDS 196
L V+A + I++ + + +D T
Sbjct: 134 LFLAHIAPIKS-------------VSACRIARVDNEFIINPNASLLNQSSLDLFVSGTKE 180
Query: 197 GHIVEVQGSA---ERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
+ ++ + + + L LA+ + + L ++
Sbjct: 181 -SLNMIEMRSLGQKLNALEEPLMLEALELAQKSLKETCALYEEA 223
>gi|145592134|ref|YP_001154136.1| exosome complex exonuclease Rrp41 [Pyrobaculum arsenaticum DSM
13514]
gi|254782535|sp|A4WM67|ECX1_PYRAR RecName: Full=Probable exosome complex exonuclease 1
gi|145283902|gb|ABP51484.1| ribosomal RNA-processing protein RRP41/SKI6 [Pyrobaculum
arsenaticum DSM 13514]
Length = 246
Score = 119 bits (297), Expect = 5e-25, Method: Composition-based stats.
Identities = 61/243 (25%), Positives = 106/243 (43%), Gaps = 22/243 (9%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKV-PMWIRNTKHGWI 59
+R GR +QMRE+ ++ V A+GS +V +G T + ++ P + G +
Sbjct: 13 VRADGRLPDQMREVKISVGVVSNADGSAMVSYGATTAVAAVYGPREMHPRHLSLPDRGVM 72
Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119
Y M P ST + K S R+ I +++ AL V L +I + ++I
Sbjct: 73 RVRYHMAPFSTKDERKSPTPSRREIE----ISKVLREALEPAVLLEQYPRSRIDVFIEII 128
Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179
QADG TR A++T A +AL D +M D + ++ G ++DL+
Sbjct: 129 QADGSTRVASLTAASLALADAGIYMRDLVVGVSVG-------------LVDGVVVLDLNG 175
Query: 180 GEDSTIDVDANF-VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
ED+ + D M + V +Q + ++ F LNLA + ++ +D +
Sbjct: 176 LEDNYGEGDLPVGYMPNLKRFVLLQLDG---AWKREVFLQALNLAVKGAEYVYQIARDAL 232
Query: 239 SNE 241
N+
Sbjct: 233 KNK 235
>gi|171185834|ref|YP_001794753.1| exosome complex exonuclease Rrp41 [Thermoproteus neutrophilus
V24Sta]
gi|254782538|sp|B1Y978|ECX1_THENV RecName: Full=Probable exosome complex exonuclease 1
gi|170935046|gb|ACB40307.1| exosome complex exonuclease 1 [Thermoproteus neutrophilus V24Sta]
Length = 246
Score = 119 bits (297), Expect = 5e-25, Method: Composition-based stats.
Identities = 61/242 (25%), Positives = 103/242 (42%), Gaps = 22/242 (9%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKV-PMWIRNTKHGWI 59
+R GR +QMRE+ ++ V A+GS +V +G T + ++ P + G +
Sbjct: 13 VRADGRAPDQMREVQISVGVISNADGSAMVSYGATTAVAAVYGPREMHPRHLSLPDRGVM 72
Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119
Y M P ST + K S R+ I +++ AL V L +I + +++
Sbjct: 73 RVRYHMAPFSTKDERKSPTPSRREIE----ISKVLREALEPAVMLEQYPRSRIDVFIEIL 128
Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179
QADG TR A++T A +AL D +M D +S G++ G ++DL+
Sbjct: 129 QADGSTRVASLTAASLALADAGIYMRDLVIG-------------VSVGLVDGTVVLDLNG 175
Query: 180 GEDSTIDVDANF-VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
ED + D M + +Q + +D LNLA + + +D +
Sbjct: 176 LEDQYGEGDLPVGYMPNLRRYTLLQLDG---AWGRDKLLEALNLAVKGAEFVYQKARDAL 232
Query: 239 SN 240
N
Sbjct: 233 KN 234
>gi|242399325|ref|YP_002994749.1| Probable exosome complex exonuclease 2 [Thermococcus sibiricus MM
739]
gi|242265718|gb|ACS90400.1| Probable exosome complex exonuclease 2 [Thermococcus sibiricus MM
739]
Length = 269
Score = 118 bits (296), Expect = 5e-25, Method: Composition-based stats.
Identities = 58/256 (22%), Positives = 100/256 (39%), Gaps = 23/256 (8%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R+ GR R +++ V + AEGS LVK G+T +L +E P + G IT
Sbjct: 21 RIDGRGLEDFRPLTVETNVIEKAEGSALVKLGNTQVLVGIKVELGEP-FPDLPDMGVITT 79
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALG--------SRQII 113
+P ++ G + E+ R+I R +R + R I
Sbjct: 80 NVEFVPLASPTFEP-----GPPDESAIELARIIDRGIRESQAIDLEKLVIVPGKLVRVIF 134
Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQ--------LSQVLKGHVAAIS 165
ID V+ DG A+ GA AL D + + + +K ++
Sbjct: 135 IDVHVLDHDGNLLDASGIGAIAALLSTKIPKVDYNEEIEEVVMLEEYEKLPVKRIPIPVT 194
Query: 166 CGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKD 225
+ G +VD ++ E+ +D ++G+I VQ S E +F + ++LA
Sbjct: 195 LAKIGGNLVVDPNFEEEQVMDGKITITTDENGYISAVQKS-EGGSFKLEEVVYAVDLAYK 253
Query: 226 RIADLIKLQKDVISNE 241
+ ++ K+ I E
Sbjct: 254 KAEEVRKVVFGAIKEE 269
>gi|210135372|ref|YP_002301811.1| polynucleotide phosphorylase/polyadenylase [Helicobacter pylori
P12]
gi|257096695|sp|B6JN53|PNP_HELP2 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|210133340|gb|ACJ08331.1| polynucleotide phosphorylase [Helicobacter pylori P12]
Length = 688
Score = 118 bits (296), Expect = 5e-25, Method: Composition-based stats.
Identities = 42/248 (16%), Positives = 82/248 (33%), Gaps = 24/248 (9%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW------IRNT 54
+R R ++R I + + A S L G T L L +
Sbjct: 313 IRPDKRALEEVRPILIESDLLPMAHSSILFTRGQTQSLVVGVLGTDNDAQTHESLEHKTP 372
Query: 55 KHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIII 114
Y P G A S R+ G RAL + + + I +
Sbjct: 373 IKERFMFHYNFPPFCVGEASSIGAASRRELGHGNL----AKRALETSIKNK---EQVIRL 425
Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPI 174
++++++G + A++ +AL+ + D + V +G AI
Sbjct: 426 VSEILESNGSSSMASVCAGSLALYASGVEIYDLVAGVAMGMVSEGQDHAILSD------- 478
Query: 175 VDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
+ ED+ D+D G I +Q + + + + L AK+ ++K+
Sbjct: 479 --ISGLEDAEGDMDFKIAGNLEG-ITAMQMDTKMSGIKLEILYQALLQAKEAREHILKIM 535
Query: 235 KDVISNEV 242
+ ++
Sbjct: 536 HEA-KEKI 542
Score = 65.3 bits (157), Expect = 8e-09, Method: Composition-based stats.
Identities = 34/224 (15%), Positives = 69/224 (30%), Gaps = 26/224 (11%)
Query: 20 VSKYAEGSCLVKFGDTHLLTTATLEEKV---PMWIRNTKHGWITAEYGMLPRSTGNRVKR 76
V+K A S + + G T +L + +E + + + G +P R
Sbjct: 20 VAKQATSSLMYRLGKTIILASVCVEREPVSEDFLPLVVQFLEKSYAAGKIPGGFVKR--- 76
Query: 77 EAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVA 136
GR R+I R LR + QI + + + +A+ A A
Sbjct: 77 ---EGRAQDFEILTSRLIDRTLRPLFPKDYRYPTQITLMVLSHDIENDLQVSALNAASAA 133
Query: 137 LHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDS 196
L V+A + I++ + + +D T
Sbjct: 134 LFLAHIAPIKS-------------VSACRIARIDNEFIINPNTSLLNQSSLDLFVSGTKE 180
Query: 197 GHIVEVQGSA---ERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
+ ++ + + + L LA+ + + L ++V
Sbjct: 181 -SLNMIEMRSLGQKLNALEEPLMLEALELAQKSLKETCTLYEEV 223
>gi|332674015|gb|AEE70832.1| polyribonucleotide nucleotidyltransferase [Helicobacter pylori 83]
Length = 688
Score = 118 bits (296), Expect = 5e-25, Method: Composition-based stats.
Identities = 42/248 (16%), Positives = 80/248 (32%), Gaps = 24/248 (9%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRN------T 54
+R R ++R I + + A S L G T L L
Sbjct: 313 IRPDKRALEEVRPILIESGLLPMAHSSILFTRGQTQSLVVGVLGTDNDAQTHESLEHKAP 372
Query: 55 KHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIII 114
Y P G A S R+ G RAL + + + I +
Sbjct: 373 IKERFMFHYNFPPFCVGEASSIGATSRRELGHGNL----AKRALETSIKNK---EQVIRL 425
Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPI 174
++++++G + A++ +AL+ + D + V +G AI
Sbjct: 426 VSEILESNGSSSMASVCAGSLALYASGVEIYDLVAGVAMGMVSEGQDRAILSD------- 478
Query: 175 VDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
+ ED+ D+D G I +Q + + + + L AK ++K+
Sbjct: 479 --ISGLEDAEGDMDFKIAGNLEG-ITAMQMDTKMSGIQLEVLYQALLQAKKAREHILKIM 535
Query: 235 KDVISNEV 242
+ ++
Sbjct: 536 HEA-KEKI 542
Score = 64.1 bits (154), Expect = 2e-08, Method: Composition-based stats.
Identities = 34/224 (15%), Positives = 67/224 (29%), Gaps = 26/224 (11%)
Query: 20 VSKYAEGSCLVKFGDTHLLTTATLEEKV---PMWIRNTKHGWITAEYGMLPRSTGNRVKR 76
V+K A S L + G T +L + E + + + G +P R
Sbjct: 20 VAKQATSSLLYRLGKTIILASVCTEREPVSEDFLPLVVQFLEKSYAAGKIPGGFVKR--- 76
Query: 77 EAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVA 136
GR R+I R LR + QI + + + +A+ A A
Sbjct: 77 ---EGRAQDFEILTSRLIDRTLRPLFPKDYRYPTQITLMVLSHDIENDLQVSALNAASAA 133
Query: 137 LHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDS 196
L V+A + I++ + +D T
Sbjct: 134 LF-------------LSHIAPIKSVSACRIARIDNEFIINPSTSLLNQSSLDLFVSGTKE 180
Query: 197 GHIVEVQGSA---ERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
+ ++ + + + L LA+ + + L +++
Sbjct: 181 -SLNMMEMRSLGQKLNALEEPLMLKALELAQKSLKETCTLYEEI 223
>gi|307637887|gb|ADN80337.1| Poly ribonucleotide nucleotidyl transferase [Helicobacter pylori
908]
gi|325996485|gb|ADZ51890.1| Polyribonucleotide nucleotidyltransferase [Helicobacter pylori
2018]
Length = 688
Score = 118 bits (296), Expect = 5e-25, Method: Composition-based stats.
Identities = 43/248 (17%), Positives = 81/248 (32%), Gaps = 24/248 (9%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT------ 54
+R R ++R IS+ + A S L G T L L
Sbjct: 313 IRPDKRALEEVRPISIESNLLPMAHSSILFTRGQTQSLVVGVLGTDNDAQTHENLEHKAP 372
Query: 55 KHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIII 114
Y P G A S R+ G RAL + + + I +
Sbjct: 373 IKERFMFHYNFPPFCVGEASSIGATSRRELGHGNL----AKRALETSIKNK---EQVIRL 425
Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPI 174
++++++G + A++ +AL+ + D + V +G AI
Sbjct: 426 VSEILESNGSSSMASVCAGSLALYASGVEIHDLVAGVAMGMVSEGQDHAILSD------- 478
Query: 175 VDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
+ ED+ D+D G I +Q + + + + L AK ++K+
Sbjct: 479 --ISGLEDAEGDMDFKIAGNVEG-ITAMQMDTKMSGIRLEVLYQALLQAKRAREHILKIM 535
Query: 235 KDVISNEV 242
+ ++
Sbjct: 536 HEA-KEKI 542
Score = 65.3 bits (157), Expect = 7e-09, Method: Composition-based stats.
Identities = 33/224 (14%), Positives = 68/224 (30%), Gaps = 26/224 (11%)
Query: 20 VSKYAEGSCLVKFGDTHLLTTATLEEKV---PMWIRNTKHGWITAEYGMLPRSTGNRVKR 76
V+K A S + + G T +L + +E + + + G +P R
Sbjct: 20 VAKQATSSLMYRLGKTLILASVCVEREPVSEDFLPLVVQFLEKSYAAGKIPGGFVKR--- 76
Query: 77 EAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVA 136
GR R+I R LR + QI + + + +A+ A A
Sbjct: 77 ---EGRAQDFEILTSRLIDRTLRPLFPKDYRYPTQITLMVLSHDIENDLQVSALNAASAA 133
Query: 137 LHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDS 196
L V+A + I++ + + +D T
Sbjct: 134 LFLAHIAPIKS-------------VSACRIARVDNEFIINPNASLLNQSSLDLFVSGTKE 180
Query: 197 GHIVEVQGSA---ERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
+ ++ + + + L LA+ + + L ++
Sbjct: 181 -SLNMIEMRSLGQKLNALEEPLMLEALELAQKSLKETCALYEEA 223
>gi|254779759|ref|YP_003057865.1| polynucleotide phosphorylase/polyadenylase [Helicobacter pylori
B38]
gi|254001671|emb|CAX29876.1| Polyribonucleotide nucleotidyltransferase (Polynucleotide
phosphorylase) (PNPase) [Helicobacter pylori B38]
Length = 688
Score = 118 bits (296), Expect = 5e-25, Method: Composition-based stats.
Identities = 42/248 (16%), Positives = 82/248 (33%), Gaps = 24/248 (9%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW------IRNT 54
+R R ++R I + + A S L G T L L +
Sbjct: 313 IRPDKRALEEVRPILIESDLLPMAHSSILFTRGQTQSLVVGVLGTDNDAQTHESLEHKTP 372
Query: 55 KHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIII 114
Y P G A S R+ G RAL + + + I +
Sbjct: 373 IKERFMFHYNFPPFCVGEASSIGATSRRELGHGNL----AKRALETSIKNK---EQVIRL 425
Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPI 174
++++++G + A++ +AL+ + D + V +G AI
Sbjct: 426 VSEILESNGSSSMASVCAGSLALYASGVEIYDLVAGVAMGMVSEGQDHAILSD------- 478
Query: 175 VDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
+ ED+ D+D G I +Q + + + + L AK+ ++K+
Sbjct: 479 --ISGLEDAEGDMDFKIAGNLEG-ITAMQMDTKMSGIRLEVLYQALLQAKEARKHILKIM 535
Query: 235 KDVISNEV 242
+ ++
Sbjct: 536 HEA-KEKI 542
Score = 62.9 bits (151), Expect = 4e-08, Method: Composition-based stats.
Identities = 33/224 (14%), Positives = 68/224 (30%), Gaps = 26/224 (11%)
Query: 20 VSKYAEGSCLVKFGDTHLLTTATLEEKV---PMWIRNTKHGWITAEYGMLPRSTGNRVKR 76
V+K A S + + G T +L + +E + + + G +P R
Sbjct: 20 VAKQATSSLMYRLGKTIILASVCIEREPVSEDFLPLVVQFLEKSYAAGKIPGGFVKR--- 76
Query: 77 EAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVA 136
GR R+I R LR + QI + + + +A+ A A
Sbjct: 77 ---EGRAQDFEILTSRLIDRTLRPLFPKDYRYPTQITLMVLSHDIENDLQVSALNAASAA 133
Query: 137 LHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDS 196
L V+A + I++ + + +D T
Sbjct: 134 LFLAHIAPIKS-------------VSACRIARIDNEFIINPNTSLLNQSSLDLFVSGTKE 180
Query: 197 GHIVEVQGSAER---ATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
+ ++ + + L LA+ + + L +++
Sbjct: 181 -SLNMIEMRSLGQQLNALEEPLMLKALELAQKSLKETCTLYEEI 223
>gi|170586564|ref|XP_001898049.1| 3' exoribonuclease family, domain 2 containing protein [Brugia
malayi]
gi|158594444|gb|EDP33028.1| 3' exoribonuclease family, domain 2 containing protein [Brugia
malayi]
Length = 752
Score = 118 bits (296), Expect = 5e-25, Method: Composition-based stats.
Identities = 41/244 (16%), Positives = 88/244 (36%), Gaps = 22/244 (9%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL--------EEKVPMWIRN 53
R GR+ N++R +++ V K GS L + G T + +T T + + +
Sbjct: 349 RCDGRKFNELRPVNIRMDVHKNLHGSALFQRGQTQVFSTVTFDAPSAAFQPDALSQLLGA 408
Query: 54 TKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQII 113
+ Y +T S R+ G ++ + R + +
Sbjct: 409 QQKKMFMLHYQFPSFATTAISSSARTSRRELGHGALAEKALKRLIP------DDFPYCLR 462
Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP 173
+ CDV++++G + A++ +AL D ++ + + ++
Sbjct: 463 LACDVLESNGSSSMASVCAGCLALLDAGVQIKAPAAGIAMGLIINEE-------RNDYRI 515
Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
+ D++ ED D+D T G +Q + + L A++ + L++L
Sbjct: 516 LTDINGLEDFAGDMDFKIAGTVRG-YTAMQLDLKVPGITPKLVTESLKQARNGLEHLLQL 574
Query: 234 QKDV 237
K
Sbjct: 575 MKKA 578
Score = 93.8 bits (231), Expect = 2e-17, Method: Composition-based stats.
Identities = 37/231 (16%), Positives = 73/231 (31%), Gaps = 28/231 (12%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATL-----EEKVPMWIRNTKHGWITAEYGMLP 67
I +++ A+G+ +V G+T +L T + + G +P
Sbjct: 45 IRFETGHIARLADGAVVVSQGETSVLATVVGRHSSASDTADFMPLTVDFQQSASAVGRIP 104
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
+ R ++ RMI R++R + G QII + DG
Sbjct: 105 MNYLRR------ELQRNDADILASRMIDRSIRPLFPKDYSGETQIICKPLAVDDDGDPVM 158
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
+ A A +G + A+ ++ +V+ + V
Sbjct: 159 LGLNAASAA-------------LTLSDIPWEGPLGAVRVALINNEVVVNPSRKNMKSSSV 205
Query: 188 DANFVMTDSGH-IVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
D D+G I+ + ++F + + I+ LI+ V
Sbjct: 206 DLVIAGCDNGKRILMIDMDGCE--IEMENFSECIRIGLQAISHLIQAINKV 254
>gi|308184960|ref|YP_003929093.1| polynucleotide phosphorylase/polyadenylase [Helicobacter pylori
SJM180]
gi|308060880|gb|ADO02776.1| polynucleotide phosphorylase/polyadenylase [Helicobacter pylori
SJM180]
Length = 688
Score = 118 bits (295), Expect = 7e-25, Method: Composition-based stats.
Identities = 42/248 (16%), Positives = 82/248 (33%), Gaps = 24/248 (9%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW------IRNT 54
+R R ++R I + + A S L G T L L +
Sbjct: 313 IRPDKRALEEVRPILIESDLLPMAHSSILFTRGQTQSLVVGVLGTDNDAQTHESLEHKIP 372
Query: 55 KHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIII 114
Y P G A S R+ G RAL + + + I +
Sbjct: 373 IKERFMFHYNFPPFCVGEASSIGATSRRELGHGNL----AKRALETSIKNK---EQVIRL 425
Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPI 174
++++++G + A++ +AL+ + D + V +G AI
Sbjct: 426 VSEILESNGSSSMASVCAGSLALYASGVEIYDLVAGVAMGMVSEGQDHAILSD------- 478
Query: 175 VDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
+ ED+ D+D G I +Q + + + + L AK+ ++K+
Sbjct: 479 --ISGLEDAEGDMDFKIAGNLEG-ITAMQMDTKMSGIRLEVLYQALLQAKEARKHILKIM 535
Query: 235 KDVISNEV 242
+ ++
Sbjct: 536 HEA-KEKI 542
Score = 64.1 bits (154), Expect = 1e-08, Method: Composition-based stats.
Identities = 34/223 (15%), Positives = 68/223 (30%), Gaps = 24/223 (10%)
Query: 20 VSKYAEGSCLVKFGDTHLLTTATLEEKV---PMWIRNTKHGWITAEYGMLPRSTGNRVKR 76
V+K A S + + G T +L + +E + + + G +P R
Sbjct: 20 VAKQATSSLMYRLGKTIILASVCVEREPVSEDFLPLVVQFLEKSYAAGKIPGGFVKR--- 76
Query: 77 EAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVA 136
GR R+I R LR + QI + + + +A+ A A
Sbjct: 77 ---EGRAQDFEILTSRLIDRTLRPLFPKDYRYPTQITLMVLSHDIENDLQVSALNAASAA 133
Query: 137 LHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDS 196
L V+A + I++ + + +D T
Sbjct: 134 LFLAHIAPIKS-------------VSACRIARVDNEFIINPNTSLLNQSSLDLFVSGTKE 180
Query: 197 G-HIVEVQGSA-ERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
+++E+ + + L LA+ + + L +
Sbjct: 181 SLNMIEMHSLGQKLNALEEPLMLKALELAQKSLKETCTLYEKA 223
>gi|223940512|ref|ZP_03632361.1| Polyribonucleotide nucleotidyltransferase [bacterium Ellin514]
gi|223890836|gb|EEF57348.1| Polyribonucleotide nucleotidyltransferase [bacterium Ellin514]
Length = 664
Score = 118 bits (295), Expect = 7e-25, Method: Composition-based stats.
Identities = 42/243 (17%), Positives = 81/243 (33%), Gaps = 14/243 (5%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE-----EKVPMWIRNTKH 56
R+ GR + +R I + A GS L G+T + ATL ++ + +
Sbjct: 217 RMDGRPLDGIRAIHSEAGILPRAHGSALFSRGETQTVALATLGTGEDAQEFDSYTGGSNE 276
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y S G + R+ G R++ ++ L I +
Sbjct: 277 KKFILHYNFPNYSVGETGRISGPGRREIGHGAL----AERSIEPMIPLDKYP-YAIRVTS 331
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
++++++G T A++ G +AL D M + + + + D
Sbjct: 332 EIMESNGSTSMASVCGGTLALMDAGVPMIRPVAGISIGMCTEHDAVD---KISAYKLLSD 388
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T+ G I Q + D L A+ ++
Sbjct: 389 IIGAEDGFGDMDCKIAGTEKG-ITGFQLDLKLRGIPHDMMAETLEKARVARLFILGEMAK 447
Query: 237 VIS 239
++
Sbjct: 448 TLA 450
Score = 56.4 bits (134), Expect = 3e-06, Method: Composition-based stats.
Identities = 24/135 (17%), Positives = 44/135 (32%), Gaps = 16/135 (11%)
Query: 102 VDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHV 161
Q+ + +I G ++ G +
Sbjct: 3 FPKGWYNEVQVQTVVLSADGENDPDILSIIG-------------ASASLMVSDIPWAGPL 49
Query: 162 AAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLN 221
A+ + G I + E + D+D +V ++ IV +G+ E S++ F A L
Sbjct: 50 GALRIARVNGKFIAIPTHAEMAESDLDLIYVGNEND-IVMFEGAGEE--ISEEDFKAALK 106
Query: 222 LAKDRIADLIKLQKD 236
+D LI QK+
Sbjct: 107 FGQDCCKPLIAAQKE 121
>gi|312194991|ref|YP_004015052.1| guanosine pentaphosphate synthetase I/polyribonucleotide
nucleotidyltransferase [Frankia sp. EuI1c]
gi|311226327|gb|ADP79182.1| guanosine pentaphosphate synthetase I/polyribonucleotide
nucleotidyltransferase [Frankia sp. EuI1c]
Length = 727
Score = 118 bits (295), Expect = 7e-25, Method: Composition-based stats.
Identities = 40/243 (16%), Positives = 81/243 (33%), Gaps = 18/243 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKH 56
+R+ GR ++R +S GS L + G+T +L TL E+ + +
Sbjct: 337 LRIDGRATTEIRALSAEVDYVPRVHGSALFERGETQILGVTTLAMLRLEQTIDTLNPDRT 396
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P STG + + R+ G RAL V+ I
Sbjct: 397 KRYMHNYNFPPYSTGETGRVGSPKRREIGHGAL----AERALLPVLPSREEFPYAIRQVS 452
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+ + ++G T ++ + ++L + + + + +G
Sbjct: 453 EALSSNGSTSMGSVCASTLSLLNAGVPLRAPVAGIAMGLIREGDAFVTLTD--------- 503
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED+ D+D T + +Q + + A L A+ ++ + +
Sbjct: 504 ILGAEDAYGDMDFKVAGTREF-VTALQLDTKLDGIPANVLAAALQQARAARLAILDVMAE 562
Query: 237 VIS 239
I
Sbjct: 563 AIE 565
Score = 93.4 bits (230), Expect = 2e-17, Method: Composition-based stats.
Identities = 45/245 (18%), Positives = 72/245 (29%), Gaps = 39/245 (15%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT----KHGWITAEYGML 66
R I ++K A GS + GDT +L+ T + + G +
Sbjct: 19 RTIRFETGRLAKQAAGSVVAYLGDTMVLSATTASKNPKENLDFFPLTVDVEERMYAAGRI 78
Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
P S R GR + R+I R LR Q++ + +
Sbjct: 79 PGSFFRR------EGRPSEDAILTCRLIDRPLRPSFTKGLRNEIQVVATVLALDPETLYD 132
Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
AI A + G V A G + G + + E +
Sbjct: 133 VVAINAASASTLLAG-------------LPFTGPVGATRVGYVDGQWVAFPTHAELARAT 179
Query: 187 VDANFVMT-----DSGHIVEVQGSAERATF----------SQDHFFAMLNLAKDRIADLI 231
D I+ V+ A T ++D A L AK I +L
Sbjct: 180 FDMVVAGRVLEDDSDVAIMMVEAEATPGTVALLADGAPAPTEDVVAAGLEAAKPAIRELC 239
Query: 232 KLQKD 236
+ Q++
Sbjct: 240 RAQRE 244
>gi|62858329|ref|NP_001016436.1| exosome component 4 [Xenopus (Silurana) tropicalis]
gi|89273823|emb|CAJ82158.1| exosome component 4 [Xenopus (Silurana) tropicalis]
gi|111598409|gb|AAH80330.1| LOC549190 protein [Xenopus (Silurana) tropicalis]
Length = 249
Score = 118 bits (295), Expect = 8e-25, Method: Composition-based stats.
Identities = 48/244 (19%), Positives = 90/244 (36%), Gaps = 23/244 (9%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVP--MWIRNTKHGWI 59
R+ GR+ ++R+I V A+GS ++ G+T L ++ +
Sbjct: 13 RVDGRKAGELRKIRARMGVFAQADGSAYIEQGNTKALAVVYGPHEIRGSRSKMLHDRSVV 72
Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119
+Y M STG R +R + + + + + + QI I ++
Sbjct: 73 NCQYSMATFSTGERKRRPHGDRKSSE----MTLHLKQTFEAAILTQLYPRSQIDIYVQIL 128
Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179
QADGG + A +A+ D M D V A S G + P+ DL Y
Sbjct: 129 QADGGNYCTCVNAATLAVIDAGIPMRDY-------------VCASSAGFIEDTPLADLSY 175
Query: 180 GEDSTIDVDANFV-MTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
E++ + S I ++ ++ +DH +++ A D+ + V+
Sbjct: 176 VEEAAGGPQLALALLPKSDQIALLEMNSR---LHEDHLERVMDAASKACKDVYAVLDQVV 232
Query: 239 SNEV 242
+
Sbjct: 233 REHL 236
>gi|218884634|ref|YP_002429016.1| exosome complex RNA-binding protein Rrp42 [Desulfurococcus
kamchatkensis 1221n]
gi|218766250|gb|ACL11649.1| Probable exosome complex exonuclease 2 [Desulfurococcus
kamchatkensis 1221n]
Length = 286
Score = 118 bits (295), Expect = 8e-25, Method: Composition-based stats.
Identities = 50/255 (19%), Positives = 92/255 (36%), Gaps = 23/255 (9%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R+ GR R I + A GS LVK G T ++ LE + P + G +
Sbjct: 28 RIDGRGLTDYRPIEVILNPITKASGSSLVKLGGTQVIAGVKLELEEP-FPDRPGEGVLQV 86
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALG--------SRQII 113
+P ++ + G + E+ R+I R+LR + +
Sbjct: 87 HAEFVPLASPSFEP-----GPPDENAIEVARVIDRSLRESKAVKLDALAIEPGKIVWSVY 141
Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQH--------MEDCSNKFQLSQVLKGHVAAIS 165
D ++ G + + +AL + K+ + VA ++
Sbjct: 142 TDIYLVDHQGNIIDTGMLASMLALATSRIPELIKGENGYKVDHTKYVGPLPINTLVATVT 201
Query: 166 CGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKD 225
G+ IVD E++ ID + +SG I +Q FS+ + +A
Sbjct: 202 MGIYNDVIIVDPLLEEEAVIDSFITIAIDESGRICGIQKRG-MKGFSRSVLDNTIEIALS 260
Query: 226 RIADLIKLQKDVISN 240
+ +L+ L K +++N
Sbjct: 261 KGRELVDLMKKILNN 275
>gi|313680799|ref|YP_004058538.1| RNAse PH [Oceanithermus profundus DSM 14977]
gi|313153514|gb|ADR37365.1| RNAse PH [Oceanithermus profundus DSM 14977]
Length = 240
Score = 118 bits (295), Expect = 8e-25, Method: Composition-based stats.
Identities = 82/241 (34%), Positives = 118/241 (48%), Gaps = 4/241 (1%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R GR R + +T R YAEGS LV+ G T +L +L VP ++ + GW+ A
Sbjct: 3 RPDGRSPTGRRPLKITPRYLDYAEGSALVELGRTRVLVAVSLTPGVPRHMQGKRSGWLMA 62
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
EY +LPRST +R + + GGR+QE+QR +GRA R+ VDL L ++ I++D DVIQA
Sbjct: 63 EYNLLPRSTESRT--QRERFKLGGRTQEVQRFLGRAFRAAVDLDLLPNQTIVVDADVIQA 120
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
DGGTR AAI G + AL + L A +VDLD E
Sbjct: 121 DGGTRVAAILGGYAALVQAFDALVRA--GRLDDWPLTEFAAISLGWAGGDEVLVDLDARE 178
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
D + D V T G ++E+ G E + + M++ +I L+ ++
Sbjct: 179 DDRVHADLTVVGTAEGELIEIHGGGEGRPVPRAIYDRMVDEGLRQIPGLVAEVHKQLAEG 238
Query: 242 V 242
V
Sbjct: 239 V 239
>gi|308062494|gb|ADO04382.1| polynucleotide phosphorylase/polyadenylase [Helicobacter pylori
Cuz20]
Length = 688
Score = 118 bits (294), Expect = 9e-25, Method: Composition-based stats.
Identities = 42/248 (16%), Positives = 80/248 (32%), Gaps = 24/248 (9%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRN------T 54
+R R ++R I + + A S L G T L L
Sbjct: 313 IRPDKRALEEVRPILIESDLLPMAHSSILFTRGQTQSLVVGVLGTDNDAQTHESLEHKAP 372
Query: 55 KHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIII 114
Y P G A S R+ G RAL + + + I +
Sbjct: 373 IKERFMFHYNFPPFCVGEASSIGATSRRELGHGNL----AKRALETSIKNK---EQVIRL 425
Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPI 174
++++++G + A++ +AL+ + D + V +G AI
Sbjct: 426 VSEILESNGSSSMASVCAGSLALYASGVEIYDLVAGVAMGMVSEGQDHAILSD------- 478
Query: 175 VDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
+ ED+ D+D G I +Q + + + + L AK ++K+
Sbjct: 479 --ISGLEDAEGDMDFKIAGNLEG-ITAMQMDTKMSGIQLEVLYQALLQAKKAREHILKIM 535
Query: 235 KDVISNEV 242
+ ++
Sbjct: 536 HEA-KEKI 542
Score = 66.4 bits (160), Expect = 4e-09, Method: Composition-based stats.
Identities = 31/224 (13%), Positives = 66/224 (29%), Gaps = 26/224 (11%)
Query: 20 VSKYAEGSCLVKFGDTHLLTTATLEEKV---PMWIRNTKHGWITAEYGMLPRSTGNRVKR 76
V+K A S + + G T +L + E + + + G +P R
Sbjct: 20 VAKQATSSLMYRLGKTIILASVCAEREPVSEDFLPLVVQFLEKSYAAGKIPGGFVKR--- 76
Query: 77 EAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVA 136
GR R+I R LR + QI + + + +A+
Sbjct: 77 ---EGRAQDFEILTSRLIDRTLRPLFPKDYRYPTQITLMVLSHDIENDLQVSALNA---- 129
Query: 137 LHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDS 196
+ F V+A + I++ + + +D T
Sbjct: 130 ---------ASATLFLSHIAPLKSVSACRIARIGNEFIINPNTSLLNQSSLDLFVSGTKE 180
Query: 197 GHIVEVQGSAER---ATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
+ ++ + + L LA+ + + L +++
Sbjct: 181 -SLNMIEMRSLGQQLNALEEPSMLKALELAQKSLKETCTLYEEI 223
>gi|119719493|ref|YP_919988.1| exosome complex RNA-binding protein Rrp42 [Thermofilum pendens Hrk
5]
gi|119524613|gb|ABL77985.1| ribosomal RNA-processing protein RRP42 [Thermofilum pendens Hrk 5]
Length = 272
Score = 118 bits (294), Expect = 9e-25, Method: Composition-based stats.
Identities = 53/251 (21%), Positives = 88/251 (35%), Gaps = 15/251 (5%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
RL GR+ +Q REI L + + A+GS V G T ++ L P + G
Sbjct: 25 RLDGRKADQYREIRLEKGIIGKADGSARVFLGSTQVIAGVKLAIGTP-FPDAPNEGVQIV 83
Query: 62 EYGMLPRSTGNRVKREAVSG-----RQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
+ P ++ R R +++ A S++ + + ID
Sbjct: 84 NAELSPVASPFFEPGPPGEEDIELARVVDRGFRSAKVVDLAKLSIIPSAKC--WTLYIDI 141
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGH------VAAISCGMLC 170
+ DG AA A +AL D K V ++ +
Sbjct: 142 YPLDHDGNLVDAAGLAALLALLDTKLPRTSVQENKIAVLDEKDPLPINTLVVYVTVAKIG 201
Query: 171 GYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADL 230
Y +VD E+ T D F +T+ G I +Q S E +F D ++A + L
Sbjct: 202 EYLVVDPTLEEELTADAKITFGITERGEICAIQKSGE-GSFRPDEVLRARDMALKASSTL 260
Query: 231 IKLQKDVISNE 241
+ K + +
Sbjct: 261 FEAIKKAVEQK 271
>gi|315587104|gb|ADU41485.1| polyribonucleotide nucleotidyltransferase [Helicobacter pylori 35A]
Length = 688
Score = 118 bits (294), Expect = 1e-24, Method: Composition-based stats.
Identities = 41/248 (16%), Positives = 79/248 (31%), Gaps = 24/248 (9%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRN------T 54
+R R ++R I + + A S L G T L L
Sbjct: 313 IRPDKRALEEVRPILIESDLLPMAHSSILFTRGQTQSLVVGVLGTDNDAQTHESLEHKAP 372
Query: 55 KHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIII 114
Y P G A S R+ G RAL + + + I +
Sbjct: 373 IKERFMFHYNFPPFCVGEASSIGATSRRELGHGNL----AKRALETSIKNK---EQVIRL 425
Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPI 174
++++++G + A++ +AL+ + D + V + AI
Sbjct: 426 VSEILESNGSSSMASVCAGSLALYASGVEIYDLVAGVAMGMVSEEQDHAILSD------- 478
Query: 175 VDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
+ ED+ D+D G I +Q + + + + L AK ++K+
Sbjct: 479 --ISGLEDAEGDMDFKIAGNLEG-ITAMQMDTKMSGIKLEILYQALLQAKKAREHILKIM 535
Query: 235 KDVISNEV 242
+ ++
Sbjct: 536 HEA-KEKI 542
Score = 63.3 bits (152), Expect = 3e-08, Method: Composition-based stats.
Identities = 33/224 (14%), Positives = 68/224 (30%), Gaps = 26/224 (11%)
Query: 20 VSKYAEGSCLVKFGDTHLLTTATLEEKV---PMWIRNTKHGWITAEYGMLPRSTGNRVKR 76
V+K A S + + G T +L + E + + + G +P R
Sbjct: 20 VAKQATSSLMYRLGKTIILASVCTEREPVSEDFLPLVVQFLEKSYAAGKIPGGFVKR--- 76
Query: 77 EAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVA 136
GR R+I R LR + QI + + + +A+ A A
Sbjct: 77 ---EGRAQDFEILTSRLIDRTLRPLFPKDYRYPTQITLMVLSHDIENDLQVSALNAASAA 133
Query: 137 LHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDS 196
L V+A + I++ + + +D T
Sbjct: 134 LF-------------LSHIAPIKSVSACRIARIDNEFIINPNTSLLNQSSLDLFVSGTKE 180
Query: 197 GHIVEVQGSA---ERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
+ ++ + + + L LA+ + + L +++
Sbjct: 181 -SLNMIEMRSLGQKLNALEEPLMLKALELAQKSLKETCTLYEEI 223
>gi|161833811|ref|YP_001598007.1| polynucleotide phosphorylase/polyadenylase [Candidatus Sulcia
muelleri GWSS]
gi|187611304|sp|A8Z660|PNP_SULMW RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|152206301|gb|ABS30611.1| putative polyribonucleotide nucleotidyltransferase [Candidatus
Sulcia muelleri GWSS]
Length = 728
Score = 118 bits (294), Expect = 1e-24, Method: Composition-based stats.
Identities = 49/243 (20%), Positives = 91/243 (37%), Gaps = 20/243 (8%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT----KH 56
+RL GR + +R I GS + G+T L+T TL + + +
Sbjct: 339 IRLDGRSLDDIRNICSQVDCLPGVHGSAIFTRGETQALSTVTLGSSLDVNKIDNAIMRAK 398
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P STG + VS R+ G RAL++++ + I +
Sbjct: 399 QRFYLHYNFPPFSTGEIKLLKGVSRREIGHGNL----AQRALKNIIPTT----YTIRVVS 450
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
DV++++G + A + + +AL D ++ + + ++ + D
Sbjct: 451 DVLESNGSSSMATVCASTLALMDSGIIVKRPVSGISMGLIMNYLTGEA-------IILSD 503
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
L ED D+D T+ G + Q + + + D + AK + +IK
Sbjct: 504 LLGDEDYIGDMDFKITGTEYG-MTACQMDIKISGITYDVLSYTIFKAKKGLLFIIKKMLT 562
Query: 237 VIS 239
+S
Sbjct: 563 TLS 565
Score = 84.1 bits (206), Expect = 1e-14, Method: Composition-based stats.
Identities = 38/239 (15%), Positives = 74/239 (30%), Gaps = 33/239 (13%)
Query: 8 ENQMREISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRN----TKHGWITAE 62
R +S+ +++ A GS +V+ G+T LL T + ++ + + +
Sbjct: 12 LEDGRALSIETGELARKANGSAVVRMGNTSLLATVVISKESKEDFKFIPLTIDYREKYSA 71
Query: 63 YGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQAD 122
G +P R GR R++ R LR + + QI+I +
Sbjct: 72 GGKIPGGYIKR------EGRPYDEEILTMRLVDRLLRPLFKDNYYNEIQIMISLLSYDIN 125
Query: 123 GGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGED 182
L + + +G V+ + + I++ E
Sbjct: 126 VLPDG-------------LAGLVASTAVSISEISFQGPVSTVRIIRINDAFIINPGIEEI 172
Query: 183 STIDV-------DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
D V + +I+ V+ E S+ + A I I+ Q
Sbjct: 173 KKSDFYLDLDLDLDLIVGGTNNYIILVE--GEMREISEIEMMEAIVKAHKYIQLQIEAQ 229
>gi|298735771|ref|YP_003728296.1| polyribonucleotide nucleotidyltransferase [Helicobacter pylori B8]
gi|298354960|emb|CBI65832.1| polyribonucleotide nucleotidyltransferase [Helicobacter pylori B8]
Length = 688
Score = 118 bits (294), Expect = 1e-24, Method: Composition-based stats.
Identities = 42/248 (16%), Positives = 81/248 (32%), Gaps = 24/248 (9%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRN------T 54
+R R ++R I + + A S L G T L L
Sbjct: 313 IRPDKRALEEVRPILIESDLLPMAHSSILFTRGQTQSLVVGVLGTDNDAQTHESLEHKAP 372
Query: 55 KHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIII 114
Y P G A S R+ G RAL + + + I +
Sbjct: 373 IKERFMFHYNFPPFCVGEASSIGATSRRELGHGNL----AKRALETSIKNK---EQVIRL 425
Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPI 174
++++++G + A++ +AL+ + D + V +G AI
Sbjct: 426 VSEILESNGSSSMASVCAGSLALYASGVEIYDLVAGVAMGMVSEGQDHAILSD------- 478
Query: 175 VDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
+ ED+ D+D G I +Q + + + + L AK+ ++K+
Sbjct: 479 --ISGLEDAEGDMDFKIAGNLEG-ITAMQMDTKMSGIRLEVLYQALLQAKEARKHILKIM 535
Query: 235 KDVISNEV 242
+ ++
Sbjct: 536 HEA-KEKI 542
Score = 64.1 bits (154), Expect = 1e-08, Method: Composition-based stats.
Identities = 33/224 (14%), Positives = 67/224 (29%), Gaps = 26/224 (11%)
Query: 20 VSKYAEGSCLVKFGDTHLLTTATLEEKV---PMWIRNTKHGWITAEYGMLPRSTGNRVKR 76
V+K A S + + G T +L + +E + + + G +P R
Sbjct: 20 VAKQATSSLMYRLGKTIILASVCVEREPVSEDFLPLVVQFLEKSYAAGKIPGGFVKR--- 76
Query: 77 EAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVA 136
GR R+I R LR + QI + + + +A+ A A
Sbjct: 77 ---EGRAQDFEILTSRLIDRTLRPLFPKDYRYPTQITLMVLSHDIENDLQVSALNAASAA 133
Query: 137 LHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDS 196
L V+A + I++ + + +D T
Sbjct: 134 LFLAHIAPIKS-------------VSACRIARVDNEFIINPNTSLLNQSSLDLFVSGTKE 180
Query: 197 GHIVEVQGSAER---ATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
+ ++ + + L LA+ + + L ++
Sbjct: 181 -SLNMIEMRSLGQQLNALEEPLMLKALELAQKSLKETCTLYEEA 223
>gi|147919674|ref|YP_686582.1| exosome complex RNA-binding protein Rrp42 [uncultured methanogenic
archaeon RC-I]
gi|121687882|sp|Q0W2Y7|ECX2_UNCMA RecName: Full=Probable exosome complex exonuclease 2
gi|110621978|emb|CAJ37256.1| putative exosome complex exonuclease 2 [uncultured methanogenic
archaeon RC-I]
Length = 260
Score = 118 bits (294), Expect = 1e-24, Method: Composition-based stats.
Identities = 52/242 (21%), Positives = 89/242 (36%), Gaps = 15/242 (6%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R GR+ ++ R IS+ V AEGS VK GD+ ++ ++ P + G I
Sbjct: 23 RADGRKFDEFRAISVETGVINKAEGSARVKIGDSQVVVGVKIQPGEP-FPDTPDSGVIIT 81
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRA--------LRSVVDLSALGSRQII 113
++P ++ SG + E+ R++ R L + S +
Sbjct: 82 NLELVPLASPTF-----ESGPPREDAIELARVVDRGVRESGAIDLSKLCIESGQKVWMVF 136
Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP 173
ID V+ DG AA GA AL + L ++ + G
Sbjct: 137 IDVHVLDHDGNLMDAASLGAIAALKATKIPNSKFGLGEDVKLPLNDVPIGVTAVNIGGAI 196
Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
++D E+S + G I +Q S T + D ++ LAK++ L +
Sbjct: 197 MLDPSLDEESVAPCKLTVITNKEGAISGMQKSG-VGTLTPDQINHIIRLAKEKANVLREK 255
Query: 234 QK 235
+
Sbjct: 256 LE 257
>gi|317182464|dbj|BAJ60248.1| polynucleotide phosphorylase/polyadenylase [Helicobacter pylori
F57]
Length = 688
Score = 117 bits (293), Expect = 1e-24, Method: Composition-based stats.
Identities = 42/248 (16%), Positives = 81/248 (32%), Gaps = 24/248 (9%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW------IRNT 54
+R R ++R I + + A S L G T L L +
Sbjct: 313 IRPDKRALEEVRPILIESDLLPMAHSSILFTRGQTQSLVVGVLGTDNDAQTHESLEHKVP 372
Query: 55 KHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIII 114
Y P G A S R+ G RAL + + + I +
Sbjct: 373 IKERFMFHYNFPPFCVGEASSIGATSRRELGHGNL----AKRALETSIKNK---EQVIRL 425
Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPI 174
++++++G + A++ +AL+ + D + V +G AI
Sbjct: 426 VSEILESNGSSSMASVCAGSLALYASGVEIYDLVAGVAMGMVSEGQDHAILSD------- 478
Query: 175 VDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
+ ED+ D+D G I +Q + + + + L AK ++K+
Sbjct: 479 --ISGLEDAEGDMDFKIAGNLEG-ITAMQMDTKMSGIQLEVLYQALLQAKKAREHILKIM 535
Query: 235 KDVISNEV 242
+ ++
Sbjct: 536 HEA-KEKI 542
Score = 62.9 bits (151), Expect = 4e-08, Method: Composition-based stats.
Identities = 33/224 (14%), Positives = 67/224 (29%), Gaps = 26/224 (11%)
Query: 20 VSKYAEGSCLVKFGDTHLLTTATLEEKV---PMWIRNTKHGWITAEYGMLPRSTGNRVKR 76
V+K A S + + G T +L + E + + + G +P R
Sbjct: 20 VAKQATSSLMYRLGKTIILASVCTEREPVSEDFLPLVVQFLEKSYAAGKIPGGFVKR--- 76
Query: 77 EAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVA 136
GR R+I R LR + QI + + + +A+ A A
Sbjct: 77 ---EGRAQDFEILTSRLIDRTLRPLFPKDYRYPTQITLMVLSHDIENDLQVSALNAASAA 133
Query: 137 LHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDS 196
L V+A + I++ + + +D T
Sbjct: 134 LF-------------LSHIAPIKSVSACRIARIGNEFIINPNTSLLNQSSLDLFVSGTKE 180
Query: 197 GHIVEVQGSAER---ATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
+ ++ + + L LA+ + + L +++
Sbjct: 181 -SLNMIEMRSLGQQLNALEEPLMLKALELAQKSLKETCTLYEEI 223
>gi|330508838|ref|YP_004385266.1| exosome complex exonuclease 2 [Methanosaeta concilii GP-6]
gi|328929646|gb|AEB69448.1| exosome complex exonuclease 2 [Methanosaeta concilii GP-6]
Length = 258
Score = 117 bits (293), Expect = 1e-24, Method: Composition-based stats.
Identities = 46/244 (18%), Positives = 93/244 (38%), Gaps = 15/244 (6%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R+ GR+ +Q REIS+ R V + AEGS LVK G + +L ++ P + + G I
Sbjct: 22 RIDGRKFDQYREISIERDVIRKAEGSALVKLGSSQVLVGVKMQPGEP-FQDSPNRGVIIT 80
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSA--------LGSRQII 113
++P ++ + G E+ R++ R +R + +
Sbjct: 81 NAELVPLASPSFEP-----GPPNEVGIELARLVDRGVRESKAVDLEALCIEPGKKVWIVF 135
Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP 173
ID ++ G AA GA AL ++ A +
Sbjct: 136 IDVHILDDCGNILDAASLGAISALLCTKVPASRFGLGEDYILPIRDIPIATTAIEFSDVL 195
Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
+ D E++ + + T +G I +Q S + + + ++++A ++ ++ +
Sbjct: 196 MFDPGVEEEAIANTKLTVITTTNGDICGMQKSGTGM-LNPEQVYRIIDIACEKAKEIREK 254
Query: 234 QKDV 237
+
Sbjct: 255 FLEA 258
>gi|242005051|ref|XP_002423388.1| Exosome complex exonuclease RRP41, putative [Pediculus humanus
corporis]
gi|212506432|gb|EEB10650.1| Exosome complex exonuclease RRP41, putative [Pediculus humanus
corporis]
Length = 253
Score = 117 bits (293), Expect = 1e-24, Method: Composition-based stats.
Identities = 53/244 (21%), Positives = 99/244 (40%), Gaps = 21/244 (8%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRN-TKHGWI 59
+RL GR+ +++R+I V +GS ++ G+T +L +V + I
Sbjct: 10 LRLDGRRASELRQIRCKLGVFSQPDGSAYIEMGNTKVLAAVYGPHQVRGRTKPLLDAAVI 69
Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119
+Y ST R K R +SQE + +AL + + QI I +V+
Sbjct: 70 NCQYSSAVFSTEERKK----RPRGDKKSQEKSMHLCQALSAAIKTELYPKSQIDIFVEVL 125
Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179
Q+DGG+ +AA+ + +AL D +++ S + P+VD+ Y
Sbjct: 126 QSDGGSFSAAVNVSTLALIDAGIPLKEYVTSCTASLANE------------NIPLVDVTY 173
Query: 180 GEDSTIDVDANF-VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
E+S + + I ++ S F DH +LN A + ++ + + +
Sbjct: 174 LEESCGGPTLTIATLPLAKKIALMEMS---QRFHLDHLEKVLNTAMEGCKNIQVILNEAV 230
Query: 239 SNEV 242
+
Sbjct: 231 KRHI 234
>gi|293977923|ref|YP_003543353.1| polyribonucleotide nucleotidyltransferase [Candidatus Sulcia
muelleri DMIN]
gi|292667854|gb|ADE35489.1| Polyribonucleotide nucleotidyltransferase (polynucleotide
phosphorylase) [Candidatus Sulcia muelleri DMIN]
Length = 730
Score = 117 bits (293), Expect = 1e-24, Method: Composition-based stats.
Identities = 48/243 (19%), Positives = 91/243 (37%), Gaps = 20/243 (8%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT----KH 56
+RL GR + +R I GS + G+T L+T TL + + +
Sbjct: 341 IRLDGRSLDDIRNIWSKVDCLPGVHGSAIFTRGETQALSTVTLGSSLDVNKIDNAIMRAK 400
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P STG + VS R+ G RAL++++ + I +
Sbjct: 401 QRFYLHYNFPPFSTGEIKLLKGVSRREIGHGNL----AQRALKNIIPTT----STIRVVS 452
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
DV++++G + A + + +AL D ++ + + ++ + D
Sbjct: 453 DVLESNGSSSMATVCASTLALMDSGILVKRPVSGISMGLIMNYLTGEA-------IILSD 505
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ED D+D T+ G + Q + + + D + AK + +IK
Sbjct: 506 ILGDEDYIGDMDFKITGTEYG-MTACQMDIKISGITYDVLSYTIFKAKKGLLFIIKKMLT 564
Query: 237 VIS 239
+S
Sbjct: 565 TLS 567
Score = 85.3 bits (209), Expect = 6e-15, Method: Composition-based stats.
Identities = 35/232 (15%), Positives = 74/232 (31%), Gaps = 17/232 (7%)
Query: 8 ENQMREISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRN----TKHGWITAE 62
R +S+ +++ A GS +V+ G+T LL T + ++ + + +
Sbjct: 12 LEDGRALSIETGELARKANGSAVVRMGNTSLLATVVISKESKEDFKFIPLTIDYREKYSA 71
Query: 63 YGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQAD 122
G +P R GR R++ R LR + + QI+I +
Sbjct: 72 GGKIPGGYIKR------EGRPYDEEILTMRLVDRLLRPLFKDNYYNEIQIMISLLSYDIN 125
Query: 123 GGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGED 182
A A A+ + + ++ ++ + + + +
Sbjct: 126 VLPDGLAGLVASTAVSISEISFQGPVSTVRIIRINDAFIINPGIEEIKKSYLDLDLDLDL 185
Query: 183 STIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
V + +I+ V+ E S+ + A I I+ Q
Sbjct: 186 DLD----LIVGGTNNYIILVE--GEMREISEIEMMEAIVKAHKYIQLQIEAQ 231
>gi|317178490|dbj|BAJ56278.1| polynucleotide phosphorylase/polyadenylase [Helicobacter pylori
F30]
Length = 688
Score = 117 bits (293), Expect = 1e-24, Method: Composition-based stats.
Identities = 42/248 (16%), Positives = 80/248 (32%), Gaps = 24/248 (9%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRN------T 54
+R R ++R I + + A S L G T L L
Sbjct: 313 IRPDKRALEEVRPILIESDLLPMAHSSILFTRGQTQSLVVGVLGTDNDAQTHESLEHKAP 372
Query: 55 KHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIII 114
Y P G A S R+ G RAL + + + I +
Sbjct: 373 IKERFMFHYNFPPFCVGEASSIGATSRRELGHGNL----AKRALETSIKNK---EQVIRL 425
Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPI 174
++++++G + A++ +AL+ + D + V +G AI
Sbjct: 426 VSEILESNGSSSMASVCAGSLALYASGVEIYDLVAGVAMGMVSEGQDHAILSD------- 478
Query: 175 VDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
+ ED+ D+D G I +Q + + + + L AK ++K+
Sbjct: 479 --ISGLEDAEGDMDFKIAGNLEG-ITAMQMDTKMSGIQLEVLYQALLQAKKAREHILKIM 535
Query: 235 KDVISNEV 242
+ ++
Sbjct: 536 HEA-KEKI 542
Score = 62.9 bits (151), Expect = 4e-08, Method: Composition-based stats.
Identities = 32/224 (14%), Positives = 67/224 (29%), Gaps = 26/224 (11%)
Query: 20 VSKYAEGSCLVKFGDTHLLTTATLEEKV---PMWIRNTKHGWITAEYGMLPRSTGNRVKR 76
V+K A S + + G T +L + E + + + G +P R
Sbjct: 20 VAKQATSSLMYRLGKTIILASVCTEREPVSEDFLPLVVQFLEKSYAAGKIPGGFVKR--- 76
Query: 77 EAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVA 136
GR R+I R LR + QI + + + +A+ A A
Sbjct: 77 ---EGRAQDFEILTSRLIDRTLRPLFPKDYRYPTQITLMVLSHDIENDLQVSALNAASAA 133
Query: 137 LHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDS 196
L V+A + +++ + + +D T
Sbjct: 134 LF-------------LSHIAPIKSVSACRIARIDNEFVINPNASLLNQSSLDLFVSGTKE 180
Query: 197 GHIVEVQGSAER---ATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
+ ++ + + L LA+ + + L +++
Sbjct: 181 -SLNMIEMRSLGQQLNALEEPLMLKALELAQKSLKETCTLYEEI 223
>gi|225677342|ref|ZP_03788315.1| polyribonucleotide nucleotidyltransferase [Wolbachia endosymbiont
of Muscidifurax uniraptor]
gi|225590610|gb|EEH11864.1| polyribonucleotide nucleotidyltransferase [Wolbachia endosymbiont
of Muscidifurax uniraptor]
Length = 507
Score = 117 bits (293), Expect = 1e-24, Method: Composition-based stats.
Identities = 37/211 (17%), Positives = 76/211 (36%), Gaps = 18/211 (8%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTT----ATLEEKVPMWIRNTKH 56
+R+ GR+ +++R+I + + GS L G+T L T +E++ I +
Sbjct: 310 VRIDGRKHDEIRQIEVEVDILSKTHGSALFTRGNTQALVVTALGTTQDEQIVDDIEGDRR 369
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y + G A R+ G + +A+ V+ + I +
Sbjct: 370 EHFMLHYNFPSFAVGETSAARAPGRREIGHGKL----AWKAIHPVLPDKSEFPYTIRVVS 425
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+++++DG + A + G +AL D ++ + + I
Sbjct: 426 EILESDGSSSMATVCGTSLALMDTGVPIKAPVAGIAMGLIKDKDEYVILSD--------- 476
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAE 207
+ ED D+D T G + +Q +
Sbjct: 477 ILGDEDYLGDMDFKVAGTSEG-VTALQMDMK 506
Score = 106 bits (264), Expect = 3e-21, Method: Composition-based stats.
Identities = 45/229 (19%), Positives = 80/229 (34%), Gaps = 25/229 (10%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTAT---LEEKVPMWIRNTKHGWITAEYGMLP 67
R +SL +++ A GS +V +GDT +L T EE V N + + G +P
Sbjct: 14 RPLSLETGKIARQAHGSVVVNYGDTSVLVTVVRKKKEESVDFLPLNVQFIAKSYAMGKIP 73
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R G+ R I R+I R++R + ++ +
Sbjct: 74 GGFFKR------EGKPSDRETLISRVIDRSIRPLFPEGFHDEISVVCNLLTYDTVNPPEV 127
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
A+ GA AL + I++ E +
Sbjct: 128 PALIGAVAALAISGVPFHFTIAGV------------MVGCDENNNYILNPSVQEMKASSL 175
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
D F+ D I+ V+ +E S+++ F + + + +IKL K+
Sbjct: 176 DL-FLSGDENSILMVE--SEVKELSEENVFNAIKFGHEHLKPVIKLIKE 221
>gi|317177956|dbj|BAJ55745.1| polynucleotide phosphorylase/polyadenylase [Helicobacter pylori
F16]
Length = 688
Score = 117 bits (293), Expect = 1e-24, Method: Composition-based stats.
Identities = 42/248 (16%), Positives = 80/248 (32%), Gaps = 24/248 (9%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRN------T 54
+R R ++R I + + A S L G T L L
Sbjct: 313 IRPDKRALEEVRPILIESDLLPMAHSSILFTRGQTQSLVVGVLGTDNDAQTHESLEHKAP 372
Query: 55 KHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIII 114
Y P G A S R+ G RAL + + + I +
Sbjct: 373 IKERFMFHYNFPPFCVGEASSIGATSRRELGHGNL----AKRALETSIKNK---EQVIRL 425
Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPI 174
++++++G + A++ +AL+ + D + V +G AI
Sbjct: 426 VSEILESNGSSSMASVCAGSLALYASGVEIYDLVAGVAMGMVSEGQDHAILSD------- 478
Query: 175 VDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
+ ED+ D+D G I +Q + + + + L AK ++K+
Sbjct: 479 --ISGLEDAEGDMDFKIAGNLEG-ITAMQMDTKMSGIQLEVLYQALLQAKKAREHILKIM 535
Query: 235 KDVISNEV 242
+ ++
Sbjct: 536 HEA-KEKI 542
Score = 62.9 bits (151), Expect = 4e-08, Method: Composition-based stats.
Identities = 33/224 (14%), Positives = 67/224 (29%), Gaps = 26/224 (11%)
Query: 20 VSKYAEGSCLVKFGDTHLLTTATLEEKV---PMWIRNTKHGWITAEYGMLPRSTGNRVKR 76
V+K A S + + G T +L + +E + + + G +P R
Sbjct: 20 VAKQATSSLMYRLGKTIILASVCVEREPVSEDFLPLVVQFLEKSYAAGKIPGGFVKR--- 76
Query: 77 EAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVA 136
GR R+I R LR + QI + + + +A+ A A
Sbjct: 77 ---EGRAQDFEILTSRLIDRTLRPLFPKDYRYPTQITLMALSHDIENDLQVSALNAASAA 133
Query: 137 LHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDS 196
L V+A + I++ + +D T
Sbjct: 134 LF-------------LSHIAPIKSVSACRIARIDNEFIINPSTSLLNQSSLDLFVSGTKE 180
Query: 197 GHIVEVQGSAER---ATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
+ ++ + + L LA+ + + L +++
Sbjct: 181 -SLNMIEMRSLGQQLNALEEPLMLKALELAQKSLKETCTLYEEI 223
>gi|317180940|dbj|BAJ58726.1| polynucleotide phosphorylase/polyadenylase [Helicobacter pylori
F32]
Length = 688
Score = 117 bits (292), Expect = 1e-24, Method: Composition-based stats.
Identities = 42/248 (16%), Positives = 80/248 (32%), Gaps = 24/248 (9%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRN------T 54
+R R ++R I + + A S L G T L L
Sbjct: 313 IRPDKRALEEVRPILIESDLLPMAHSSILFTRGQTQSLVVGVLGTDNDAQTHESLEHKAP 372
Query: 55 KHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIII 114
Y P G A S R+ G RAL + + + I +
Sbjct: 373 IKERFMFHYNFPPFCVGEASSIGATSRRELGHGNL----AKRALETSIKNK---EQVIRL 425
Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPI 174
++++++G + A++ +AL+ + D + V +G AI
Sbjct: 426 VSEILESNGSSSMASVCAGSLALYASGVEIYDLVAGVAMGMVSEGQDHAILSD------- 478
Query: 175 VDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
+ ED+ D+D G I +Q + + + + L AK ++K+
Sbjct: 479 --ISGLEDAEGDMDFKIAGNLEG-ITAMQMDTKMSGIQLEVLYQALLQAKKAREHILKIM 535
Query: 235 KDVISNEV 242
+ ++
Sbjct: 536 HEA-KEKI 542
Score = 61.0 bits (146), Expect = 2e-07, Method: Composition-based stats.
Identities = 33/224 (14%), Positives = 67/224 (29%), Gaps = 26/224 (11%)
Query: 20 VSKYAEGSCLVKFGDTHLLTTATLEEKV---PMWIRNTKHGWITAEYGMLPRSTGNRVKR 76
V+K A S + + G T +L + +E + + + G +P R
Sbjct: 20 VAKQAISSLMYRLGKTIILASVCVEREPVSEDFLPLVVQFLEKSYAAGKIPGGFVKR--- 76
Query: 77 EAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVA 136
GR R+I R LR + QI + + + +A+ A A
Sbjct: 77 ---EGRAQDFEILTSRLIDRTLRPLFPKDYRYPTQITLMVLSHDIENDLQVSALNAASAA 133
Query: 137 LHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDS 196
L V+A + I++ + +D T
Sbjct: 134 LF-------------LSHIAPIKSVSACRIARIDNEFIINPSTSLLNQSSLDLFVSGTKE 180
Query: 197 GHIVEVQGSAER---ATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
+ ++ + + L LA+ + + L +++
Sbjct: 181 -SLNMIEMRSLGQQLNALEEPLMLKALELAQRSLKETCTLYEEI 223
>gi|317012994|gb|ADU83602.1| polynucleotide phosphorylase/polyadenylase [Helicobacter pylori
Lithuania75]
Length = 688
Score = 117 bits (292), Expect = 2e-24, Method: Composition-based stats.
Identities = 42/248 (16%), Positives = 80/248 (32%), Gaps = 24/248 (9%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRN------T 54
+R R ++R I + + A S L G T L L
Sbjct: 313 IRPDKRALEEVRPILIESDLLPMAHSSILFTRGQTQSLVVGVLGTDNDAQTHESLEHKAP 372
Query: 55 KHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIII 114
Y P G A S R+ G RAL + + + I +
Sbjct: 373 IKERFMFHYNFPPFCVGEASSIGATSRRELGHGNL----AKRALETSIKNK---EQVIRL 425
Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPI 174
++++++G + A++ +AL+ + D + V +G AI
Sbjct: 426 VSEILESNGSSSMASVCAGSLALYASGVEIYDLVAGVAMGMVSEGQDHAILSD------- 478
Query: 175 VDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
+ ED+ D+D G I +Q + + + + L AK ++K+
Sbjct: 479 --ISGLEDAEGDMDFKIAGNLEG-ITAMQMDTKMSGIRLEVLYQALLQAKKAREHILKIM 535
Query: 235 KDVISNEV 242
+ ++
Sbjct: 536 HEA-KEKI 542
Score = 64.9 bits (156), Expect = 1e-08, Method: Composition-based stats.
Identities = 33/224 (14%), Positives = 67/224 (29%), Gaps = 26/224 (11%)
Query: 20 VSKYAEGSCLVKFGDTHLLTTATLEEKV---PMWIRNTKHGWITAEYGMLPRSTGNRVKR 76
V+K A S + + G T +L + +E + + + G +P R
Sbjct: 20 VAKQATSSLMYRLGKTIILASVCVEREPVSEDFLPLVVQFLEKSYAAGKIPGGFVKR--- 76
Query: 77 EAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVA 136
GR R+I R LR + QI + + + +A+ A A
Sbjct: 77 ---EGRAQDFEILTSRLIDRTLRPLFPKDYRYPTQITLMVLSHDIENDLQVSALNAASAA 133
Query: 137 LHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDS 196
L V+A + I++ + + +D T
Sbjct: 134 LFLAHIAPIKS-------------VSACRIARIDNEFIINPNTSLLNQSSLDLFVSGTKE 180
Query: 197 GHIVEVQGSA---ERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
+ ++ + + + L LA+ + + L +
Sbjct: 181 -SLNMIEMRSLGQKLNALEEPLMLKALELAQKSLKETCTLYEKA 223
>gi|298674552|ref|YP_003726302.1| 3' exoribonuclease [Methanohalobium evestigatum Z-7303]
gi|298287540|gb|ADI73506.1| 3' exoribonuclease [Methanohalobium evestigatum Z-7303]
Length = 260
Score = 117 bits (292), Expect = 2e-24, Method: Composition-based stats.
Identities = 54/240 (22%), Positives = 93/240 (38%), Gaps = 15/240 (6%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R R +++R+IS+ + AEGS V +GDT L+ L+ P + G I
Sbjct: 23 REDNRAFDEIRDISIETDIIGNAEGSAKVYWGDTQLIVGVKLQVGEP-FPDTPDKGIIIT 81
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRA--------LRSVVDLSALGSRQII 113
+ P ++ + +G + EI R++ R L + +
Sbjct: 82 SLELNPIASPDF-----EAGPPKEDAIEIARVVDRGIRESGAIDLNKLCITEGEEVWTVF 136
Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP 173
ID +V+ DG AA GA AL E + ++ IS + G
Sbjct: 137 IDVNVLNDDGNIMDAASIGAIAALMTTNIPAESEGYGEDMMMPVRDIPVGISLVDISGEL 196
Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
+VD Y E+S D V G I +Q S + +++ N+A+ R +++ +
Sbjct: 197 MVDPTYNEESVCDTKITVVSNQDGSISAMQKSGT-GSLTEEKVLQAANIARTRASEIREK 255
>gi|268575784|ref|XP_002642872.1| Hypothetical protein CBG15142 [Caenorhabditis briggsae]
Length = 721
Score = 117 bits (292), Expect = 2e-24, Method: Composition-based stats.
Identities = 38/242 (15%), Positives = 87/242 (35%), Gaps = 20/242 (8%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL--------EEKVPMWIR 52
+R GR+ R I + + K G + + G T +++T T + V +
Sbjct: 312 IRCDGRRPTDFRPIRIQVDMYKKLHGCSMFQRGQTQVMSTVTFDSPTAAFHPDSVAQLLG 371
Query: 53 NTKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQI 112
+ + Y +T + +++ R+ G +AL+ + +
Sbjct: 372 SQRKKSFMLHYEFPSFATNDIGASRSLNRREIGHGAL----AEKALKPLFPTG--FPYAV 425
Query: 113 IIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY 172
+ C V++++G + A++ G +AL+D M++ + + +
Sbjct: 426 RLACQVLESNGSSSMASVCGGSLALYDAGVPMKNAAAGVAIGLISDE-----KEPETNYK 480
Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
+ D+ ED D+D T +G Q + ++ L+ A+ I ++
Sbjct: 481 VLTDILGIEDYAGDMDFKIAGTKNG-FTAAQLDVKNDGLTRQQLRESLDAARAGIDHVLG 539
Query: 233 LQ 234
Sbjct: 540 KM 541
Score = 62.2 bits (149), Expect = 6e-08, Method: Composition-based stats.
Identities = 26/226 (11%), Positives = 56/226 (24%), Gaps = 21/226 (9%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGN 72
+ L ++++A + + GD ++ T + +G S
Sbjct: 38 LELKTGHMARFASAAVVASSGDNSVMATVV----QRKQKQGDGNGVPLQVEYRPSASAVG 93
Query: 73 RVKREAVSGR--QGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAI 130
R+ + Q I R I R++R + + I
Sbjct: 94 RIPTNFLRRELSQSDNEILISRAIDRSIRP-----LMPANSYETQVICKPLALDENADQI 148
Query: 131 TGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDAN 190
A L N + + V+ E ++
Sbjct: 149 MLGINAASSALHISSAPFNGPLAAIRVSMDPRG-------KIFHVNPGQEELKASSMNMI 201
Query: 191 FVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
M + V ++ E + L++A + L +
Sbjct: 202 VAMRRNQKTVMIELDGEETR--GEQLEEALDVAFQNVERLHVAMDE 245
>gi|260834851|ref|XP_002612423.1| hypothetical protein BRAFLDRAFT_121031 [Branchiostoma floridae]
gi|229297800|gb|EEN68432.1| hypothetical protein BRAFLDRAFT_121031 [Branchiostoma floridae]
Length = 246
Score = 116 bits (291), Expect = 2e-24, Method: Composition-based stats.
Identities = 56/244 (22%), Positives = 100/244 (40%), Gaps = 23/244 (9%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVP--MWIRNTKHGWI 59
R+ GR+ +++R++ V A+GS ++ G+T L T +V +
Sbjct: 13 RIDGRRSSELRKVCARMGVFTQADGSAYIEQGNTKALATVYGPHEVRKGRGKIQHDRAVV 72
Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119
++ M STG R R R SQE+ + + +V+ QI I ++
Sbjct: 73 NCQFSMATFSTGERKSRPKGDRR----SQEMSMHLRQTFEAVIVTELFPRSQIDIYVQIL 128
Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179
QADGG A + A +A+ D M+D V A + G + P++D+ Y
Sbjct: 129 QADGGNYCACVNAATLAVIDAGIPMKDY-------------VCACTAGFIQDSPLLDISY 175
Query: 180 GEDSTIDVDANF-VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
E+S +M S IV ++ ++ D+ +L+LA D+ + +
Sbjct: 176 VEESAGAPFLTVAMMPKSEQIVLLEMNSR---LHADNMEKVLDLATQGCKDVFAVLDRHV 232
Query: 239 SNEV 242
+ V
Sbjct: 233 RDHV 236
>gi|308063994|gb|ADO05881.1| polynucleotide phosphorylase/polyadenylase [Helicobacter pylori
Sat464]
Length = 688
Score = 116 bits (291), Expect = 2e-24, Method: Composition-based stats.
Identities = 42/248 (16%), Positives = 79/248 (31%), Gaps = 24/248 (9%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRN------T 54
+R R ++R I + + A S L G T L L
Sbjct: 313 IRPDKRALEEVRPILIESDLLPMAHSSILFTRGQTQSLVVGVLGTDNDAQTHESLEHKAP 372
Query: 55 KHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIII 114
Y P G A S R+ G RAL + + I +
Sbjct: 373 IKERFMFHYNFPPFCVGEASSIGATSRRELGHGNL----AKRALETSIKNKDQ---VIRL 425
Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPI 174
++++++G + A++ +AL+ + D + V +G AI
Sbjct: 426 VSEILESNGSSSMASVCAGSLALYASGVEIYDLVAGVAMGMVSEGQDHAILSD------- 478
Query: 175 VDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
+ ED+ D+D G I +Q + + + + L AK ++K+
Sbjct: 479 --ISGLEDAEGDMDFKIAGNLEG-ITAMQMDTKMSGIQLEVLYQALLQAKKAREHILKIM 535
Query: 235 KDVISNEV 242
+ ++
Sbjct: 536 HEA-KEKI 542
Score = 64.5 bits (155), Expect = 1e-08, Method: Composition-based stats.
Identities = 33/224 (14%), Positives = 69/224 (30%), Gaps = 26/224 (11%)
Query: 20 VSKYAEGSCLVKFGDTHLLTTATLEEKV---PMWIRNTKHGWITAEYGMLPRSTGNRVKR 76
V+K A S + + G T +L + +E + + + G +P R
Sbjct: 20 VAKQATSSLMYRLGKTIILASVCVEREPVSEDFLPLVVQFLEKSYAAGKIPGGFVKR--- 76
Query: 77 EAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVA 136
GR R+I R LR + QI + + + +A+ A A
Sbjct: 77 ---EGRAQDFEILTSRLIDRTLRPLFPKDYRYPTQITLMVLSHDIENDLQVSALNAASAA 133
Query: 137 LHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDS 196
L V+A + I++ + + +D T
Sbjct: 134 LF-------------LSHIAPLKSVSACRIARIGNEFIINPNTSLLNQSSLDLFVSGTKE 180
Query: 197 GHIVEVQGSA---ERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
+ ++ + + + L LA+ + + L +++
Sbjct: 181 -SLNMIEMRSLGQKLNALEEPLMLKALELAQKSLKETCTLYEEI 223
>gi|156937005|ref|YP_001434801.1| ribosomal RNA-processing protein RRP41/SKI6 [Ignicoccus hospitalis
KIN4/I]
gi|156565989|gb|ABU81394.1| ribosomal RNA-processing protein RRP41/SKI6 [Ignicoccus hospitalis
KIN4/I]
Length = 241
Score = 116 bits (291), Expect = 2e-24, Method: Composition-based stats.
Identities = 62/242 (25%), Positives = 100/242 (41%), Gaps = 23/242 (9%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVP-MWIRNTKHGWIT 60
R GR +R + + V A+GS ++ G T ++ + P + I
Sbjct: 15 RHDGRGPADLRPLEMKVGVLYNADGSAWLRIGGTEVVAAVYGPREPPMRGMVLPDRAVIR 74
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
Y M P ST R + R E+ ++I AL + + I + +VI+
Sbjct: 75 CRYHMAPFSTDERK-----NPAPSRREIELSKVIREALEATILTHLFPRTIIDVFIEVIR 129
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTAA+T A +AL D +KG VA ++ G + G ++D+D
Sbjct: 130 ADGGTRTAALTAASLALADAGI-------------PMKGLVAGVAVGKVQGTLVLDIDEL 176
Query: 181 EDSTIDVDANF-VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
ED + D + IV +Q + F L LA + I + +QK V++
Sbjct: 177 EDMYGEADMPVAAIPSLNKIVLLQLNG---VLEPREFPQALKLAWEGIKKIHAMQKKVLA 233
Query: 240 NE 241
+
Sbjct: 234 EK 235
>gi|297380394|gb|ADI35281.1| Polyribonucleotide nucleotidyltransferase [Helicobacter pylori
v225d]
Length = 688
Score = 116 bits (291), Expect = 2e-24, Method: Composition-based stats.
Identities = 42/243 (17%), Positives = 78/243 (32%), Gaps = 23/243 (9%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRN------T 54
+R R ++R I + + A S L G T L L
Sbjct: 313 IRPDKRALEEVRPILIESDLLPMAHSSILFTRGQTQSLVVGVLGTDNDAQTHESLEHKAP 372
Query: 55 KHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIII 114
Y P G A S R+ G RAL + + + I +
Sbjct: 373 IKERFMFHYNFPPFCVGEASSIGATSRRELGHGNL----AKRALETSIKNK---EQVIRL 425
Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPI 174
++++++G + A++ +AL+ + D + V +G AI
Sbjct: 426 VSEILESNGSSSMASVCAGSLALYASGVEIYDLVAGVAMGMVSEGQDHAILSD------- 478
Query: 175 VDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
+ ED+ D+D G I +Q + + + + L AK ++K+
Sbjct: 479 --ISGLEDAEGDMDFKIAGNLEG-ITAMQMDTKMSGIQLEILYQALLQAKKAREHILKIM 535
Query: 235 KDV 237
+
Sbjct: 536 HEA 538
Score = 64.1 bits (154), Expect = 2e-08, Method: Composition-based stats.
Identities = 33/224 (14%), Positives = 68/224 (30%), Gaps = 26/224 (11%)
Query: 20 VSKYAEGSCLVKFGDTHLLTTATLEEKV---PMWIRNTKHGWITAEYGMLPRSTGNRVKR 76
V+K A S + + G T +L + +E + + + G +P R
Sbjct: 20 VAKQATSSLMYRLGKTIILASVCVEREPVSEDFLPLVVQFLEKSYAAGKIPGGFVKR--- 76
Query: 77 EAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVA 136
GR R+I R LR + QI + + + +A+ A A
Sbjct: 77 ---EGRAQDFEILTSRLIDRTLRPLFPKDYRYPTQITLMVLSHDIENDLQVSALNAASAA 133
Query: 137 LHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDS 196
L V+A + I++ + + +D T
Sbjct: 134 LF-------------LSHIAPIKSVSACRIARIGNEFIINPNTSLLNQSSLDLFVSGTKE 180
Query: 197 GHIVEVQGSAER---ATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
+ ++ + + L LA+ + + L +++
Sbjct: 181 -SLNMIEMRSLGQQLNALEEPLMLKALELAQKSLKETCTLYEEI 223
>gi|188528001|ref|YP_001910688.1| polynucleotide phosphorylase/polyadenylase [Helicobacter pylori
Shi470]
gi|257096697|sp|B2UUX6|PNP_HELPS RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|188144241|gb|ACD48658.1| polynucleotide phosphorylase/polyadenylase [Helicobacter pylori
Shi470]
Length = 688
Score = 116 bits (291), Expect = 2e-24, Method: Composition-based stats.
Identities = 42/248 (16%), Positives = 79/248 (31%), Gaps = 24/248 (9%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRN------T 54
+R R ++R I + + A S L G T L L
Sbjct: 313 IRPDKRALEEVRPILIESDLLPMAHSSILFTRGQTQSLVVGVLGTDNDAQTHESLEHKAP 372
Query: 55 KHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIII 114
Y P G A S R+ G RAL + + I +
Sbjct: 373 IKERFMFHYNFPPFCVGEASSIGATSRRELGHGNL----AKRALETSIKNKDQ---VIRL 425
Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPI 174
++++++G + A++ +AL+ + D + V +G AI
Sbjct: 426 VSEILESNGSSSMASVCAGSLALYASGVEIYDLIAGVAMGMVSEGQDHAILSD------- 478
Query: 175 VDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
+ ED+ D+D G I +Q + + + + L AK ++K+
Sbjct: 479 --ISGLEDAEGDMDFKIAGNLEG-ITAMQMDTKMSGIQLEVLYQALLQAKKAREHILKIM 535
Query: 235 KDVISNEV 242
+ ++
Sbjct: 536 HEA-KEKI 542
Score = 64.5 bits (155), Expect = 1e-08, Method: Composition-based stats.
Identities = 33/224 (14%), Positives = 68/224 (30%), Gaps = 26/224 (11%)
Query: 20 VSKYAEGSCLVKFGDTHLLTTATLEEKV---PMWIRNTKHGWITAEYGMLPRSTGNRVKR 76
V+K A S + + G T +L + +E + + + G +P R
Sbjct: 20 VAKQATSSLMYRLGKTIILASVCVEREPVGEDFLPLVVQFLEKSYAAGKIPGGFVKR--- 76
Query: 77 EAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVA 136
GR R+I R LR + QI + + + +A+ A A
Sbjct: 77 ---EGRAQDFEILTSRLIDRTLRPLFPKDYRYPTQITLMVLSHDVENDLQVSALNAASAA 133
Query: 137 LHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDS 196
L V+A + I++ + + +D T
Sbjct: 134 LF-------------LSHIAPIKSVSACRIARIGNEFIINPNTSLLNQSSLDLFVSGTKE 180
Query: 197 GHIVEVQGSAER---ATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
+ ++ + + L LA+ + + L +++
Sbjct: 181 -SLNMIEMRSLGQQLNALEEPLMLKALELAQKSLKETCTLYEEI 223
>gi|317011412|gb|ADU85159.1| polynucleotide phosphorylase/polyadenylase [Helicobacter pylori
SouthAfrica7]
Length = 688
Score = 116 bits (290), Expect = 2e-24, Method: Composition-based stats.
Identities = 42/248 (16%), Positives = 80/248 (32%), Gaps = 24/248 (9%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRN------T 54
+R R ++R I + + A S L G T L L
Sbjct: 313 IRPDKRALEEVRPILIESDLLPMAHSSILFTRGQTQSLVVGVLGTDNDAQTHESLEHKAP 372
Query: 55 KHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIII 114
Y P G A S R+ G RAL + + + I +
Sbjct: 373 IKERFMFHYNFPPFCVGEASSIGATSRRELGHGNL----AKRALETSIKNK---EQVIRL 425
Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPI 174
++++++G + A++ +AL+ + D + V +G AI
Sbjct: 426 VSEILESNGSSSMASVCAGSLALYASGVEIYDLVAGVAMGMVSEGQDHAILSD------- 478
Query: 175 VDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
+ ED+ D+D G I +Q + + + + L AK ++K+
Sbjct: 479 --ISGLEDAEGDMDFKIAGNLEG-ITAMQMDTKMSGIQLEILYQALLQAKRAREHILKIM 535
Query: 235 KDVISNEV 242
+ ++
Sbjct: 536 HEA-KEKI 542
Score = 64.5 bits (155), Expect = 1e-08, Method: Composition-based stats.
Identities = 34/224 (15%), Positives = 65/224 (29%), Gaps = 26/224 (11%)
Query: 20 VSKYAEGSCLVKFGDTHLLTTATLEEKV---PMWIRNTKHGWITAEYGMLPRSTGNRVKR 76
V+K A S L + G T +L + +E + + + G +P R
Sbjct: 20 VAKQATSSLLYRLGKTIILASVCVEREPVSEDFLPLVVQFLEKSYAAGKIPGGFVKR--- 76
Query: 77 EAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVA 136
GR R+I R LR + QI + + + +A+ A A
Sbjct: 77 ---EGRAQDFEILTSRIIDRTLRPLFPKDYRYPTQITLMVLSHDIENDLQVSALNAASAA 133
Query: 137 LHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDS 196
L V A + I++ + +D T
Sbjct: 134 LF-------------LSHVAPFKSVNACRIARVDNAFIINPSASLLNQSSLDLFVSGTKE 180
Query: 197 GHIVEVQGSAER---ATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
+ ++ + + L LA+ + + L ++
Sbjct: 181 -SLNMIEMRSLGQQLNALEEPLMLEALELAQKSLKETCTLYEET 223
>gi|125984746|ref|XP_001356137.1| GA13761 [Drosophila pseudoobscura pseudoobscura]
gi|195161898|ref|XP_002021795.1| GL26697 [Drosophila persimilis]
gi|54644456|gb|EAL33197.1| GA13761 [Drosophila pseudoobscura pseudoobscura]
gi|194103595|gb|EDW25638.1| GL26697 [Drosophila persimilis]
Length = 249
Score = 116 bits (290), Expect = 3e-24, Method: Composition-based stats.
Identities = 44/242 (18%), Positives = 82/242 (33%), Gaps = 18/242 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+RL GR+ +++R I V + +GS ++ G+T +L + T I
Sbjct: 13 LRLDGRRPHELRHIKCKLGVFEQPDGSAYMEQGNTKVLAAVYGPHQAKGMKTETNDVIIN 72
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
+Y +T R R +S E + + +AL + + QI I +V+Q
Sbjct: 73 CQYSQATFATAERK----NRPRGDRKSLEFKMYLEQALSAAIKSELYPRSQIDIYVEVLQ 128
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADG A+ A +AL D S
Sbjct: 129 ADGANYAVALNAATLALIDAGI-----------CLNEFIVACTASLSKSSIPLTDISHTE 177
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
E S + + ++ I ++ S F DH ++ A ++ + + +
Sbjct: 178 EVSGGPMLTVAALPNAQKIAFLEMS---ERFHIDHLETVIETAMAGCREIRDILEAAVRE 234
Query: 241 EV 242
+
Sbjct: 235 HL 236
>gi|322378832|ref|ZP_08053258.1| polynucleotide phosphorylase/polyadenylase [Helicobacter suis HS1]
gi|322380127|ref|ZP_08054375.1| polynucleotide phosphorylase/polyadenylase [Helicobacter suis HS5]
gi|321147432|gb|EFX42084.1| polynucleotide phosphorylase/polyadenylase [Helicobacter suis HS5]
gi|321148756|gb|EFX43230.1| polynucleotide phosphorylase/polyadenylase [Helicobacter suis HS1]
Length = 672
Score = 116 bits (290), Expect = 3e-24, Method: Composition-based stats.
Identities = 41/242 (16%), Positives = 84/242 (34%), Gaps = 23/242 (9%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPM------WIRNTK 55
R GR Q+R I + + S L + G T L TL + + +
Sbjct: 302 RPDGRTLTQIRPIYIETNLLPACHSSVLFERGHTQALVACTLGSENDAKQGLGTYEKTPS 361
Query: 56 HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115
Y P G + A+S R+ G Q+ + L I +
Sbjct: 362 KERFMLHYNFPPFCVGEAMPMGALSRRELGHGHLAQKALESTLPEQ-------HPVIRLV 414
Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIV 175
++++++G + A++ +AL + D + +++G AI
Sbjct: 415 SEILESNGSSSMASVCAGSLALKAAGIDIRDLVAGVAMGLMVEGDKYAILSD-------- 466
Query: 176 DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
+ ED D+D T G ++ +Q + + + +L AK +++ +
Sbjct: 467 -ISALEDMQGDMDFKIAGTHQG-VLAMQMDTKLSGICLEWLGEILKQAKQARTVILERMQ 524
Query: 236 DV 237
++
Sbjct: 525 EI 526
>gi|46201049|ref|ZP_00055817.2| COG1185: Polyribonucleotide nucleotidyltransferase (polynucleotide
phosphorylase) [Magnetospirillum magnetotacticum MS-1]
Length = 354
Score = 116 bits (290), Expect = 3e-24, Method: Composition-based stats.
Identities = 41/235 (17%), Positives = 81/235 (34%), Gaps = 28/235 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----HGWITAEYGML 66
R++ L +++ A+G+ LV +G+T +L T + I + G +
Sbjct: 16 RKLVLETGKIARQADGAVLVTYGETSVLCTVVGAKSQKPGIDFFPLTVNYQEKAFAAGKI 75
Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
P R GR + + R+I R +R + Q++ +
Sbjct: 76 PGGFFKR------EGRPSEKETLVSRLIDRPIRPLFADGFRNEVQVVCTVLSHDLENDPD 129
Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
AA+ G A G V A G + G +++ G+ D
Sbjct: 130 IAALVGTSAA-------------LTISGLPFMGPVGAARVGYVNGEYVLNPLVGDLPKSD 176
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
+D T G ++ V+ A++ S+D + +I+ + ++ E
Sbjct: 177 LDLVVAGTVEG-VLMVESEAKQ--LSEDIMLGAVMFGHRSFQAVIQAIIE-LAEE 227
Score = 51.0 bits (120), Expect = 2e-04, Method: Composition-based stats.
Identities = 9/27 (33%), Positives = 13/27 (48%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGS 27
+R+ GR +R I + V A GS
Sbjct: 315 VRIDGRDTKTVRAIEVEVGVLPRAHGS 341
>gi|94986185|ref|YP_605549.1| ribonuclease PH [Deinococcus geothermalis DSM 11300]
gi|94556466|gb|ABF46380.1| RNAse PH [Deinococcus geothermalis DSM 11300]
Length = 237
Score = 116 bits (290), Expect = 3e-24, Method: Composition-based stats.
Identities = 86/233 (36%), Positives = 128/233 (54%), Gaps = 5/233 (2%)
Query: 5 GRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYG 64
GR R +S+ R V+ +A GS ++ G T +L T ++E+K +R K GW+TAEY
Sbjct: 8 GRDALTPRPLSVRRGVNPHAPGSVHLQLGRTEILATVSVEDKPAPHMRGKKEGWLTAEYA 67
Query: 65 MLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGG 124
MLPR+T +R R Q GR EIQR++GRALR+ +DL + + +DCDV+ ADGG
Sbjct: 68 MLPRATTDRQAR--ERNLQNGRRHEIQRLLGRALRAGIDLRHFRGQTLYVDCDVLVADGG 125
Query: 125 TRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDST 184
TR A++ + ALHD + + L V A+S G++ VDLDY ED
Sbjct: 126 TRVASVLAGYAALHDFADRLI--HSGKLSEWPLVHAVGAVSVGLVGDELRVDLDYAEDKA 183
Query: 185 IDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI-KLQKD 236
D N V TDSG ++E QG AE + + +L + + + L+ ++Q+
Sbjct: 184 ARADLNVVATDSGLLIEAQGGAEEGPITPAEYVRLLTVGVEAVGALLREVQRQ 236
>gi|327400939|ref|YP_004341778.1| exosome complex exonuclease 2 [Archaeoglobus veneficus SNP6]
gi|327316447|gb|AEA47063.1| exosome complex exonuclease 2 [Archaeoglobus veneficus SNP6]
Length = 259
Score = 116 bits (289), Expect = 3e-24, Method: Composition-based stats.
Identities = 48/244 (19%), Positives = 95/244 (38%), Gaps = 15/244 (6%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R+ GR+ ++ R I + + AEGS LVK G+T ++ ++ P + G I
Sbjct: 23 RIDGRKFDEFRHIEIETNIIAKAEGSALVKLGNTQVVVGVKMQPGEP-FPDAPDKGIIIT 81
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGR------ALRSVVDLSALGS--RQII 113
++P ++ S E+ R++ R A+ G I
Sbjct: 82 NAELVPLASPTFEPGP-----PDENSIELARVVDRGIRESEAVDLTKLCIEEGEKVWLIF 136
Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP 173
ID + DG A+ A AL E ++ +++ ++
Sbjct: 137 IDIHALDDDGNLMDASSLAAIAALLTTTVPAERFDVGEDFPLPVRDLPISVTSLIVNNRI 196
Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
+VD E S + + +IV +Q S S++ F+ +++++ ++ ++ +L
Sbjct: 197 LVDPSRDEVSVGEYFMTITTDQADNIVAMQKSG-SYLLSEEKFYELIDISIEKAREIREL 255
Query: 234 QKDV 237
KDV
Sbjct: 256 LKDV 259
>gi|254168306|ref|ZP_04875152.1| 3' exoribonuclease family, domain 2 [Aciduliprofundum boonei T469]
gi|197622815|gb|EDY35384.1| 3' exoribonuclease family, domain 2 [Aciduliprofundum boonei T469]
Length = 270
Score = 116 bits (289), Expect = 4e-24, Method: Composition-based stats.
Identities = 44/238 (18%), Positives = 87/238 (36%), Gaps = 9/238 (3%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R+ GR +++R +++T+ AEGS LV G+T +L +E P + G +T
Sbjct: 28 RVDGRHFDEIRNLTVTKGYIPRAEGSALVNLGNTRVLVGVKIEPGTP-FPDTPNMGILTT 86
Query: 62 EYGMLPRSTGNRVKREAVSG-----RQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
+ P ++ R R I L +V + ID
Sbjct: 87 NAELAPLASPTFEPGPPGEEAIELARVVDRGIREGHAID--LEKLVIEEGEKVWIVFIDI 144
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
V+ DG AA GA AL + + ++ + ++ + + + D
Sbjct: 145 HVLDYDGNLFDAAGYGALAALTNAIVPASRYDLGEDFKLPVQHYPVPVTFAKIGDWIVAD 204
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
+ E+S + G I +Q TF+ + ++N++ + + ++
Sbjct: 205 PNLDEESIASARLTVATNEEGKINAMQK-GLSGTFTYEEVKKVINMSMNIGGKVREII 261
>gi|294495472|ref|YP_003541965.1| ribosomal RNA-processing protein RRP42 [Methanohalophilus mahii DSM
5219]
gi|292666471|gb|ADE36320.1| ribosomal RNA-processing protein RRP42 [Methanohalophilus mahii DSM
5219]
Length = 261
Score = 116 bits (289), Expect = 4e-24, Method: Composition-based stats.
Identities = 48/235 (20%), Positives = 86/235 (36%), Gaps = 5/235 (2%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R GRQ N++R+I+L + AEGS +V++GDT ++ ++ P + + G I
Sbjct: 24 REDGRQFNELRDIALETGIIDKAEGSAMVQYGDTQVMVGVKMQVGTP-FPDSPAEGVIIT 82
Query: 62 EYGMLPRSTGNRV-KREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGS--RQIIIDCDV 118
+ P ++ + + GR + A+ G + ID V
Sbjct: 83 SMELNPIASPDFEAGPPREKAIEMGRIVDRGIRESGAIDINKLCITEGEEVWMVFIDVHV 142
Query: 119 IQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLD 178
+ G AA GA AL E ++ +S + ++D
Sbjct: 143 LNNSGNILDAASLGAIAALMTTTVPSEREGKGEDYPMPVREMPVGVSLVKIGDEMVLDPT 202
Query: 179 YGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
YGE+S + G I +Q S + S +AK++ + +
Sbjct: 203 YGEESVCETRITISSNQDGSICSMQKSG-SGSLSPAQVVKASKIAKEKGEIIREK 256
>gi|217032224|ref|ZP_03437722.1| hypothetical protein HPB128_2g26 [Helicobacter pylori B128]
gi|216946095|gb|EEC24706.1| hypothetical protein HPB128_2g26 [Helicobacter pylori B128]
Length = 382
Score = 115 bits (288), Expect = 4e-24, Method: Composition-based stats.
Identities = 42/248 (16%), Positives = 81/248 (32%), Gaps = 24/248 (9%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRN------T 54
+R R ++R I + + A S L G T L L
Sbjct: 7 IRPDKRALEEVRPILIESDLLPMAHSSILFTRGQTQSLVVGVLGTDNDAQTHESLEHKAP 66
Query: 55 KHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIII 114
Y P G A S R+ G RAL + + + I +
Sbjct: 67 IKERFMFHYNFPPFCVGEASSIGATSRRELGHGNL----AKRALETSIKNK---EQVIRL 119
Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPI 174
++++++G + A++ +AL+ + D + V +G AI
Sbjct: 120 VSEILESNGSSSMASVCAGSLALYASGVEIYDLVAGVAMGMVSEGQDHAILSD------- 172
Query: 175 VDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
+ ED+ D+D G I +Q + + + + L AK+ ++K+
Sbjct: 173 --ISGLEDAEGDMDFKIAGNLEG-ITAMQMDTKMSGIRLEVLYQALLQAKEARKHILKIM 229
Query: 235 KDVISNEV 242
+ ++
Sbjct: 230 HEA-KEKI 236
>gi|225709136|gb|ACO10414.1| Exosome complex exonuclease RRP41 [Caligus rogercresseyi]
Length = 246
Score = 115 bits (288), Expect = 4e-24, Method: Composition-based stats.
Identities = 44/243 (18%), Positives = 85/243 (34%), Gaps = 16/243 (6%)
Query: 1 MRLSGRQENQMREISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWI 59
+RL GR+ +++R + S A+GS ++ G+T +L +
Sbjct: 9 LRLDGRKSDELRRLRCRLGAFSWSADGSAYLEMGNTKVLAAVYGPREPRGGSSGDNSNKE 68
Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119
A + S R RS E+ + + + + QI I +V+
Sbjct: 69 EAILNVQFSSAAFSTAERKQRQRGDKRSLEMAAHLKQTFAACIQTELYPRSQIDIFVEVL 128
Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179
Q DGG A++ A +AL + D S + + + IS
Sbjct: 129 QTDGGHYCASVNAATLALIHAGIPLRDYVCACSASLIKETPLLDISM------------L 176
Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
+ + SG IV ++ S F DH +++ A + + + +V+
Sbjct: 177 ESNLGGPELILAALPKSGEIVLLEMS---QRFHMDHLEKVIDEALEGTRKIRDILDEVVR 233
Query: 240 NEV 242
+ +
Sbjct: 234 DHL 236
>gi|213514504|ref|NP_001134304.1| Exosome complex exonuclease RRP41 [Salmo salar]
gi|209732228|gb|ACI66983.1| Exosome complex exonuclease RRP41 [Salmo salar]
Length = 245
Score = 115 bits (288), Expect = 5e-24, Method: Composition-based stats.
Identities = 49/243 (20%), Positives = 87/243 (35%), Gaps = 21/243 (8%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVP--MWIRNTKHGWI 59
RL GR+ ++R++ V A+GS ++ G+T L +V I
Sbjct: 13 RLDGRKAAELRKVQARMGVFAQADGSAYIEQGNTKALAVVYGPHEVRGSRSKTLHDRAVI 72
Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119
+Y M ST R +R + + + + + V + QI I ++
Sbjct: 73 NCQYSMATFSTAERKRRPHGDRKSTE----MSLHLKQTFEAAVLTNLYPRSQIDIYVKIL 128
Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179
Q+DGG +A + A +A+ D M D V + +A +
Sbjct: 129 QSDGGNYSACVNAATLAVVDAGIPMRDYVCACTAGFVDETPLADLCHA------------ 176
Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
E A ++ GHI +Q A QDH ++ A + K+ +V+
Sbjct: 177 EESGGGTSLALALLPRGGHIALLQMDAR---LHQDHLETLMEAAMTACKGVSKVLDEVVR 233
Query: 240 NEV 242
+
Sbjct: 234 QHL 236
>gi|289595859|ref|YP_003482555.1| 3' exoribonuclease [Aciduliprofundum boonei T469]
gi|289533646|gb|ADD07993.1| 3' exoribonuclease [Aciduliprofundum boonei T469]
Length = 270
Score = 115 bits (288), Expect = 5e-24, Method: Composition-based stats.
Identities = 44/238 (18%), Positives = 86/238 (36%), Gaps = 9/238 (3%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R+ GR +++R +++T+ AEGS LV G+T +L +E P + G +T
Sbjct: 28 RVDGRHFDEIRNLTVTKGYIPRAEGSALVNLGNTRVLVGVKIEPGTP-FPDTPNMGILTT 86
Query: 62 EYGMLPRSTGNRVKREAVSG-----RQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
+ P ++ R R I L +V + ID
Sbjct: 87 NAELAPLASPTFEPGPPGEEAIELARVVDRGIREGHAID--LEKLVIEEGEKVWIVFIDI 144
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
V+ DG AA GA AL + ++ + ++ + + + D
Sbjct: 145 HVLDYDGNLFDAAGYGALAALTNATVPASRYDLGEDFKLPVQHYPVPVTFAKIGDWIVAD 204
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
+ E+S + G I +Q TF+ + ++N++ + + ++
Sbjct: 205 PNLDEESIASARLTVATNEEGKINAMQK-GLSGTFTYEEVKKVINMSMNIGGKVREII 261
>gi|115534063|ref|NP_497324.3| hypothetical protein BE0003N10.1 [Caenorhabditis elegans]
Length = 738
Score = 115 bits (288), Expect = 5e-24, Method: Composition-based stats.
Identities = 36/242 (14%), Positives = 85/242 (35%), Gaps = 20/242 (8%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL--------EEKVPMWIR 52
+R GR+ ++ R I++ + K G + + G T +++T T + V +
Sbjct: 333 IRCDGRRPDEFRPITIHVDMYKKLHGCSIFQRGQTQVMSTVTFDSPAAAFHPDSVAQLLG 392
Query: 53 NTKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQI 112
+ + Y + +++ R+ G ++ + A
Sbjct: 393 SQRKKSFMLHYEFPGFAINEFGTTRSLNRREIGHGALAEKSLKNLFP------ADFPYAT 446
Query: 113 IIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY 172
+ C V++++G + A++ G +AL D M++ + + + +
Sbjct: 447 RLACQVLESNGSSSMASVCGGSLALFDAGVPMKNAAAGVAIGLISDE-----AEPETKYR 501
Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
+ D+ ED D+D T G Q + ++ L A+ I +++
Sbjct: 502 VLTDILGIEDYAGDMDFKVAGTRDG-FTAAQLDVKNGGLTRRQLTESLQAARAGIDHVLQ 560
Query: 233 LQ 234
Sbjct: 561 KM 562
Score = 58.7 bits (140), Expect = 6e-07, Method: Composition-based stats.
Identities = 31/230 (13%), Positives = 62/230 (26%), Gaps = 22/230 (9%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGN 72
I L ++++A + + FGD ++ T + G S
Sbjct: 38 IELKAGHLARFASSTVVASFGDNAVMATVV----QRKSKQGDGSGVPLQVEYRPSASAIG 93
Query: 73 RVKREAVSGR--QGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAI 130
R+ + Q I R I R++R ++ I
Sbjct: 94 RIPTNFLRRELSQSDNEILISRAIDRSIRPLL-----PGNSYETQIICKPLALDENADQI 148
Query: 131 TGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDAN 190
A LQ N + + V+ E ++
Sbjct: 149 MLGINAASTALQISSAAYNGPLAALRVARTARG--------DFHVNPTQEELREASLNLI 200
Query: 191 FVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
M V ++ + S +H L++A +A L + + + +
Sbjct: 201 VAMRKHEKTVMIELDGRES--SAEHLEHALDVAFRHVAKLHEAMEQLTAE 248
>gi|320167599|gb|EFW44498.1| exosome component 4 [Capsaspora owczarzaki ATCC 30864]
Length = 252
Score = 115 bits (287), Expect = 6e-24, Method: Composition-based stats.
Identities = 61/239 (25%), Positives = 91/239 (38%), Gaps = 22/239 (9%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRN-TKHGWI 59
+R+ GR+ N++R I V A+GS ++ G+T +L T +V + I
Sbjct: 14 LRIDGRRPNELRRIQARVGVFMQADGSAYIEQGNTKILATVYGPHEVSRKNKPLHDRAII 73
Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119
EY + +T R K R + A V QI I V+
Sbjct: 74 NCEYRVASFATAERKKPVRTDKRALDL----AAAVRGAFEGAVMTQLYPRSQIDIFLQVL 129
Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179
Q+DGG R I A +AL D M+D V A S G + P++D++Y
Sbjct: 130 QSDGGNRAVCINAATLALMDAGIAMKDF-------------VCACSVGCIDDTPLLDINY 176
Query: 180 GEDSTIDVDANF-VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
EDS D V+ S V V+ + D F +L LA D + +
Sbjct: 177 IEDSAGGPDLTVAVLARSRKTVLVEMDSR---LHIDRFDDVLRLAIDGCQAIHSILDSA 232
>gi|308461535|ref|XP_003093059.1| hypothetical protein CRE_13733 [Caenorhabditis remanei]
gi|308251715|gb|EFO95667.1| hypothetical protein CRE_13733 [Caenorhabditis remanei]
Length = 712
Score = 115 bits (287), Expect = 6e-24, Method: Composition-based stats.
Identities = 37/243 (15%), Positives = 83/243 (34%), Gaps = 20/243 (8%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL--------EEKVPMWIR 52
+R GR+ R I++ + K G + + G T +++T T + V +
Sbjct: 306 IRCDGRKITDFRPITIQVDMYKKLHGCSMFQRGQTQVMSTVTFDSPAAAFHPDSVAQLLG 365
Query: 53 NTKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQI 112
+ + Y + + + R+ G +AL+++
Sbjct: 366 SQRKKSFMLHYEFPSFAINEVGISRSSNRREIGHGAL----AEKALKNLFPKD--FPYAT 419
Query: 113 IIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY 172
+ C V++++G + A++ G +AL D M+ + + + +
Sbjct: 420 RLACQVLESNGSSSMASVCGGSLALFDAGVPMKSAAAGVAIGLITDQNE-----PDSKYK 474
Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
+ D+ ED D+D T +G Q + ++ L A+ I ++
Sbjct: 475 VLTDILGIEDYAGDMDFKIAGTKNG-FTAAQLDVKNDGLTRQQLKESLQAARSGIDHVLS 533
Query: 233 LQK 235
Sbjct: 534 KMN 536
Score = 39.8 bits (91), Expect = 0.32, Method: Composition-based stats.
Identities = 20/218 (9%), Positives = 52/218 (23%), Gaps = 45/218 (20%)
Query: 19 RVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGNRVKREA 78
++++A + + GD ++ T + + +P R +
Sbjct: 44 HIARFASSAVVASSGDNAVMATVV------------QKKEKQGDGNGVPLQVEYRKNFKK 91
Query: 79 VSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVALH 138
+S ++I + L I A
Sbjct: 92 ISKLFFRNFFFHFQVICKPLAL-----------------------DENADQIMLGINAAS 128
Query: 139 DCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGH 198
L + + + ++ E +D M +
Sbjct: 129 TALHISSAPFSGPLAALRVTMSPRGT--------FQINPTQEELREASLDVIIAMKKNQK 180
Query: 199 IVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
V ++ + S +H ++A + + L +
Sbjct: 181 TVMIELDGKE--VSAEHLEQACHVAFENVEKLHVAMEK 216
>gi|14601412|ref|NP_147949.1| exosome complex exonuclease Rrp41 [Aeropyrum pernix K1]
gi|29337017|sp|Q9YC03|ECX1_AERPE RecName: Full=Probable exosome complex exonuclease 1
gi|5105131|dbj|BAA80445.1| exosome complex exonuclease Rrp41 homologue [Aeropyrum pernix K1]
Length = 246
Score = 115 bits (287), Expect = 6e-24, Method: Composition-based stats.
Identities = 61/241 (25%), Positives = 97/241 (40%), Gaps = 23/241 (9%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKV-PMWIRNTKHGWIT 60
R GR +R + + + A+GS LV+FG T +L + + +
Sbjct: 17 RHDGRLPEDLRPVRMQVGILHNADGSALVEFGRTRVLAAVYGPREPHQRFYVLPDRAALR 76
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
Y M P ST R S R E+ +++ AL VV I + +V+Q
Sbjct: 77 VRYHMAPFSTDERK-----SPAPSRREIELSKVVREALEPVVLAEEFPRTVIDVFLEVLQ 131
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTAA+T A +AL D M ++ G + G +VD+D
Sbjct: 132 ADGGTRTAAVTAASLALADAGIPMRALVGG-------------VAVGKIQGVLVVDVDEL 178
Query: 181 EDSTIDVDANFVMTDS-GHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
ED + D G I +Q + + + F L +A I +++++K+ I
Sbjct: 179 EDMYGEADMPVAAAPDIGEITLLQLNG---VLTGEEFRTALAMALRAIDRVVEMEKEAIR 235
Query: 240 N 240
Sbjct: 236 K 236
>gi|133918825|emb|CAL29617.1| polyribonucleotide nucleotidyltransferase [Rhizobium undicola]
Length = 180
Score = 114 bits (286), Expect = 7e-24, Method: Composition-based stats.
Identities = 31/167 (18%), Positives = 62/167 (37%), Gaps = 8/167 (4%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +R I + GS L G+T + ATL +E+ +
Sbjct: 7 RIDGRDLETVRPIVAEVGLLPRTHGSALFTRGETQAIVVATLGTGEDEQYVDSLTGMYKE 66
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + + R+ G + RA+ ++ + + + +
Sbjct: 67 NFMLHYNFPPYSVGETGRMGSPGRREIGHGKL----AWRAIHPMLPTAEQFPYTLRVVSE 122
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAI 164
+ +++G + A + G +AL D + + +L+G A+
Sbjct: 123 ITESNGSSSMATVCGTSLALMDAGVPLAKPVAGIAMGLILEGERFAV 169
>gi|329766296|ref|ZP_08257843.1| exosome complex exonuclease 1 [Candidatus Nitrosoarchaeum limnia
SFB1]
gi|329137198|gb|EGG41487.1| exosome complex exonuclease 1 [Candidatus Nitrosoarchaeum limnia
SFB1]
Length = 245
Score = 114 bits (286), Expect = 7e-24, Method: Composition-based stats.
Identities = 63/243 (25%), Positives = 97/243 (39%), Gaps = 23/243 (9%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKV-PMWIRNTKHGWI 59
+R GR+ ++ R I + K A+GS ++FGD +L V P + NT G +
Sbjct: 16 IRCDGRKVDEPRRIMIKAGGLKNADGSAYIEFGDNKILVGVFGPRDVHPKHMSNTDTGIL 75
Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119
Y M P S R + R EI ++I AL V L + + +V+
Sbjct: 76 RVRYHMEPFSVTERK-----NPAPSRREIEISKVIKEALEPAVMLEKFPRTAVDVFIEVL 130
Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179
QADGGTR AA++ A VAL D M D VAA + G I+D++
Sbjct: 131 QADGGTRCAALSAASVALADAGIPMRD-------------MVAACAAGKAADTIILDVNN 177
Query: 180 GEDSTIDVDANF-VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
ED D M I +Q + + + + +LQK +
Sbjct: 178 EEDQAGQADMPIGYMPSLEKITLLQLDG---VLTPAEYKKCVETGIHGCKIVYELQKKAL 234
Query: 239 SNE 241
+++
Sbjct: 235 TDK 237
>gi|167045226|gb|ABZ09886.1| putative 3' exoribonuclease family, domain 1 [uncultured marine
crenarchaeote HF4000_APKG8O8]
Length = 273
Score = 114 bits (286), Expect = 8e-24, Method: Composition-based stats.
Identities = 47/248 (18%), Positives = 85/248 (34%), Gaps = 16/248 (6%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R+ GR ++ R +S+ V +A GS V+ GDT ++ ++ P + + G
Sbjct: 24 RIDGRALDEHRPLSIDVGVIPHANGSARVRLGDTEVVAGVKIQPDRP-FPDMGEKGIFIC 82
Query: 62 EYGMLPR-----STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
+LP TG R R MI L +V + + D
Sbjct: 83 TAEILPLAHPSVETGPPQPYVIEIARVVDRGIRESGMID--LSQMVLVKDKSVIGLFADN 140
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCS-------NKFQLSQVLKGHVAAISCGML 169
V DG A + A+ + + + + +++ G++
Sbjct: 141 VVTDHDGNLFDACSYASTAAVLTSKMPKWEMKDDKPVLVDGEESDTPITTIPVSVTMGLI 200
Query: 170 CGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIAD 229
Y IVD + E +D G+IV +Q + FS D L+ +
Sbjct: 201 GEYIIVDPNLDEWECLDARITITTNSDGNIVALQKGG-SSGFSLDQLIKCSELSISTGPE 259
Query: 230 LIKLQKDV 237
+ ++ K
Sbjct: 260 IREIIKQT 267
>gi|240104092|ref|YP_002960401.1| exosome complex RNA-binding protein Rrp42 [Thermococcus
gammatolerans EJ3]
gi|259645408|sp|C5A2B8|ECX2_THEGJ RecName: Full=Probable exosome complex exonuclease 2
gi|239911646|gb|ACS34537.1| 3'-5' exoribonuclease, exosome complex exonuclease 2, Rrp42p-like
protein (Rrp42p) [Thermococcus gammatolerans EJ3]
Length = 273
Score = 114 bits (286), Expect = 8e-24, Method: Composition-based stats.
Identities = 49/255 (19%), Positives = 94/255 (36%), Gaps = 23/255 (9%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R+ GR + R+I + + AEGS V+ G T +L ++ P + G +T
Sbjct: 24 RIDGRSFEEYRDIEIKTGFIEKAEGSAWVRLGGTRVLVGIKVDVGEP-FPDLPDRGVMTT 82
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALG--------SRQII 113
++P ++ R+ E+ R+I R +R + R +
Sbjct: 83 NVELVPLASPTFEPGP-----PDERAIELARVIDRGIRESQAVELEKLVIVPGKLVRVVF 137
Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNK--------FQLSQVLKGHVAAIS 165
ID V+ DG A A AL + + + +K ++
Sbjct: 138 IDVHVLDHDGNLFDATGLAAMAALMTTKIPKVEYNEETGEIIKLDEYEPLPVKHVPIPVT 197
Query: 166 CGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKD 225
+ IVD + E++ +D ++GHI VQ E +F + ++ A
Sbjct: 198 FAKIGSSIIVDPNLDEETVMDSRLTITTDETGHISAVQK-GEGGSFKLEEVMYAIDTALK 256
Query: 226 RIADLIKLQKDVISN 240
+ +L K+ + + +
Sbjct: 257 KADELRKILLEAVGS 271
>gi|18250193|gb|AAK73855.2|AC092690_1 Hypothetical protein BE0003N10.1 [Caenorhabditis elegans]
Length = 745
Score = 114 bits (286), Expect = 8e-24, Method: Composition-based stats.
Identities = 36/242 (14%), Positives = 85/242 (35%), Gaps = 20/242 (8%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL--------EEKVPMWIR 52
+R GR+ ++ R I++ + K G + + G T +++T T + V +
Sbjct: 333 IRCDGRRPDEFRPITIHVDMYKKLHGCSIFQRGQTQVMSTVTFDSPAAAFHPDSVAQLLG 392
Query: 53 NTKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQI 112
+ + Y + +++ R+ G ++ + A
Sbjct: 393 SQRKKSFMLHYEFPGFAINEFGTTRSLNRREIGHGALAEKSLKNLFP------ADFPYAT 446
Query: 113 IIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY 172
+ C V++++G + A++ G +AL D M++ + + + +
Sbjct: 447 RLACQVLESNGSSSMASVCGGSLALFDAGVPMKNAAAGVAIGLISDE-----AEPETKYR 501
Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
+ D+ ED D+D T G Q + ++ L A+ I +++
Sbjct: 502 VLTDILGIEDYAGDMDFKVAGTRDG-FTAAQLDVKNGGLTRRQLTESLQAARAGIDHVLQ 560
Query: 233 LQ 234
Sbjct: 561 KM 562
Score = 58.3 bits (139), Expect = 8e-07, Method: Composition-based stats.
Identities = 31/230 (13%), Positives = 62/230 (26%), Gaps = 22/230 (9%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGN 72
I L ++++A + + FGD ++ T + G S
Sbjct: 38 IELKAGHLARFASSTVVASFGDNAVMATVV----QRKSKQGDGSGVPLQVEYRPSASAIG 93
Query: 73 RVKREAVSGR--QGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAI 130
R+ + Q I R I R++R ++ I
Sbjct: 94 RIPTNFLRRELSQSDNEILISRAIDRSIRPLL-----PGNSYETQIICKPLALDENADQI 148
Query: 131 TGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDAN 190
A LQ N + + V+ E ++
Sbjct: 149 MLGINAASTALQISSAAYNGPLAALRVARTARG--------DFHVNPTQEELREASLNLI 200
Query: 191 FVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
M V ++ + S +H L++A +A L + + + +
Sbjct: 201 VAMRKHEKTVMIELDGRES--SAEHLEHALDVAFRHVAKLHEAMEQLTAE 248
>gi|207742728|ref|YP_002259120.1| n terminus of a polyribonucleotide nucleotidyltransferase protein
[Ralstonia solanacearum IPO1609]
gi|206594122|emb|CAQ61049.1| probable n terminus of a polyribonucleotide nucleotidyltransferase
protein [Ralstonia solanacearum IPO1609]
Length = 481
Score = 114 bits (286), Expect = 8e-24, Method: Composition-based stats.
Identities = 38/167 (22%), Positives = 71/167 (42%), Gaps = 8/167 (4%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +R I + V A GS L G+T L ATL +E++ ++
Sbjct: 315 RIDGRDTRTVRPIEIRSSVLPRAHGSALFTRGETQALVVATLGTKSDEQIIDALQGEYRD 374
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y M P +TG + + R+ G + RAL V+ + I + +
Sbjct: 375 RFMLHYNMPPFATGETGRVGSPKRREIGHGRL----AKRALIPVLPKDDEFAYTIRLVSE 430
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAI 164
+ +++G + A++ G +AL D ++ + +L+G+ A+
Sbjct: 431 ITESNGSSSMASVCGGCLALMDAGVPVKAHVAGVAMGLILEGNKFAV 477
Score = 96.1 bits (237), Expect = 4e-18, Method: Composition-based stats.
Identities = 37/233 (15%), Positives = 76/233 (32%), Gaps = 31/233 (13%)
Query: 13 EISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT----KHGWITAEYGMLP 67
++ + +++ A G+ L+ DT +L T + + T G +P
Sbjct: 15 KVRMETGEIARQASGAVLLDMDDTVVLATVVGAKNPKPGQDFFPLTVDYIEKTYAAGKIP 74
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R GR R+I R LR + Q+++ I +
Sbjct: 75 GGFFKR------EGRPSENETLTSRLIDRPLRPLFPEGFYNEVQVVVHVLSINPEVPADI 128
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
A+ A AL G V A G G +++ + + + D+
Sbjct: 129 PALVAASAALAVSG-------------LPFNGPVGAARVGYKDGQYLLNPNRAQLAHSDL 175
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKD----RIADLIKLQKD 236
D T+ ++ V+ A++ S++ + + I + L ++
Sbjct: 176 DLVVAGTER-AVLMVESEAQQ--LSEEVMLGAVVYGHEQMQIAINAIHDLVRE 225
>gi|225715268|gb|ACO13480.1| Exosome complex exonuclease RRP41 [Esox lucius]
Length = 245
Score = 114 bits (286), Expect = 8e-24, Method: Composition-based stats.
Identities = 49/243 (20%), Positives = 86/243 (35%), Gaps = 21/243 (8%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVP--MWIRNTKHGWI 59
RL GR+ ++R++ V A+GS ++ G+T L +V I
Sbjct: 13 RLDGRKATELRKVQARMGVFAQADGSAYIEQGNTKALAVVYGPHEVRMSRSKTLHDRAVI 72
Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119
+Y M ST R +R + + + + + V + QI I ++
Sbjct: 73 NCQYSMATFSTAERKRRPHGDRKSTE----MSLHLKQTFEAAVLTNLYPRSQIDIYVKIL 128
Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179
Q+DGG +A + A +A+ D M D V + +A +
Sbjct: 129 QSDGGNYSACVNAATLAVIDAGIPMRDYVCACTAGFVDETPLADLCHA------------ 176
Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
E A ++ GHI +Q A QDH ++ A + K+ V+
Sbjct: 177 EESGGGTSLALALLPRGGHIALLQMDAR---LHQDHLETLMEAAMTACKGVSKVLDQVVR 233
Query: 240 NEV 242
+
Sbjct: 234 QHL 236
>gi|133918839|emb|CAL29624.1| polyribonucleotide nucleotidyltransferase [Sinorhizobium meliloti]
gi|133918841|emb|CAL29625.1| polyribonucleotide nucleotidyltransferase [Sinorhizobium meliloti]
gi|133918843|emb|CAL29626.1| polyribonucleotide nucleotidyltransferase [Sinorhizobium meliloti]
gi|133919172|emb|CAL29634.1| polyribonucleotide nucleotidyltransferase [Sinorhizobium arboris]
gi|133919174|emb|CAL29635.1| polyribonucleotide nucleotidyltransferase [Sinorhizobium arboris
LMG 14919]
gi|133919176|emb|CAL29636.1| polyribonucleotide nucleotidyltransferase [Sinorhizobium arboris]
Length = 180
Score = 114 bits (286), Expect = 9e-24, Method: Composition-based stats.
Identities = 30/178 (16%), Positives = 63/178 (35%), Gaps = 8/178 (4%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +R I + GS L G+T + ATL +E+ +
Sbjct: 7 RIDGRDLVTVRPIVAEVGILPRTHGSALFTRGETQAIVVATLGTGEDEQYVDSLTGMYKE 66
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + + R+ G + RA+ ++ + + + +
Sbjct: 67 NFMLHYNFPPYSVGETGRMGSPGRREIGHGKL----AWRAIHPMLPTAEQFPYTLRVVSE 122
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIV 175
+ +++G + A + G +AL D + + + + A+ +L +
Sbjct: 123 ITESNGSSSMATVCGTSLALMDAGVPLAKPVAGIAMGLIKEDDRFAVLSDILGDEDHL 180
>gi|133919170|emb|CAL29633.1| polyribonucleotide nucleotidyltransferase [Sinorhizobium kostiense]
Length = 180
Score = 114 bits (285), Expect = 9e-24, Method: Composition-based stats.
Identities = 30/178 (16%), Positives = 63/178 (35%), Gaps = 8/178 (4%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +R I + GS L G+T + ATL +E+ +
Sbjct: 7 RIDGRDLVTVRPIVAEVGLLPRTHGSALFTRGETQAIVVATLGTGEDEQYVDSLTGMYKE 66
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + + R+ G + RA+ ++ + + + +
Sbjct: 67 NFMLHYNFPPFSVGETGRLGSPGRREIGHGKL----AWRAIHPMLPTAEQFPYTLRVVSE 122
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIV 175
+ +++G + A + G +AL D + + + + A+ +L +
Sbjct: 123 ITESNGSSSMATVCGTSLALMDAGVPIAKPVAGIAMGLIKEDDRFAVLSDILGDKDHL 180
>gi|118576719|ref|YP_876462.1| RNase PH [Cenarchaeum symbiosum A]
gi|259645399|sp|A0RXU1|ECX1_CENSY RecName: Full=Probable exosome complex exonuclease 1
gi|118195240|gb|ABK78158.1| RNase PH [Cenarchaeum symbiosum A]
Length = 243
Score = 114 bits (285), Expect = 1e-23, Method: Composition-based stats.
Identities = 60/242 (24%), Positives = 99/242 (40%), Gaps = 23/242 (9%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKV-PMWIRNTKHGWI 59
+R GR+ ++ R + +T V A GS ++FGD +L V P + T+ G +
Sbjct: 16 IRCDGRKISETRRVEITAGVLNNANGSAYIEFGDNKILAGIFGPRDVHPKHMVRTETGIL 75
Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119
Y M P S R R EI ++I AL + L + + +V+
Sbjct: 76 RCRYHMSPFSVSERK-----KPAPSRREIEISKVIKEALEPSLMLEQFPRTAVDVFIEVL 130
Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179
QADGG+R AA+ A VAL D M D V+A + G + ++D++
Sbjct: 131 QADGGSRCAALAAASVALADAGIPMRD-------------MVSACAAGKVADTIVLDVNN 177
Query: 180 GEDSTIDVDANF-VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
ED D M + + +Q + D + +A D + ++QK +
Sbjct: 178 EEDQAGQADMPVGYMPNLDQVTLIQLDG---VLTPDEYSRCAAMAIDGCKQVYEVQKKAL 234
Query: 239 SN 240
S+
Sbjct: 235 SD 236
>gi|41152247|ref|NP_957033.1| exosome complex exonuclease RRP41 [Danio rerio]
gi|37747963|gb|AAH59525.1| Exosc4 protein [Danio rerio]
gi|46403217|gb|AAS92628.1| exosome complex exonuclease RRP41 [Danio rerio]
gi|157423431|gb|AAI53618.1| Exosc4 protein [Danio rerio]
Length = 245
Score = 114 bits (285), Expect = 1e-23, Method: Composition-based stats.
Identities = 50/243 (20%), Positives = 85/243 (34%), Gaps = 21/243 (8%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVP--MWIRNTKHGWI 59
RL GR+ ++R++ V A+GS ++ G+T L ++ I
Sbjct: 13 RLDGRKATELRKVQARMSVFAQADGSAYLEQGNTKALAVVYGPHEIRGSRSKSLHDRAII 72
Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119
+Y M ST R +R + + + + + V QI I ++
Sbjct: 73 NCQYSMATFSTAERKRRPHGDRKSSE----MSLHLKQTFEAAVLTELYPRSQIDIYVKIL 128
Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179
QADGG +A + A +AL D M D V +A +
Sbjct: 129 QADGGNYSACVNAATLALVDAGIPMRDYVCACSAGFVEDTPLADLCHA------------ 176
Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
E A ++ SG+I +Q A QDH ++ A + K+ V+
Sbjct: 177 EESGGGTALALALLPRSGNIALLQMDAR---LHQDHLDTLMEAAMTACKEFSKVLDSVVR 233
Query: 240 NEV 242
+
Sbjct: 234 QHL 236
>gi|109948073|ref|YP_665301.1| polynucleotide phosphorylase/polyadenylase [Helicobacter
acinonychis str. Sheeba]
gi|123362511|sp|Q17VM4|PNP_HELAH RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|109715294|emb|CAK00302.1| polyribonucleotide nucleotidyltransferase [Helicobacter acinonychis
str. Sheeba]
Length = 688
Score = 114 bits (285), Expect = 1e-23, Method: Composition-based stats.
Identities = 43/248 (17%), Positives = 80/248 (32%), Gaps = 24/248 (9%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRN------T 54
+R R ++R IS+ + A S L G T L L
Sbjct: 313 IRPDKRALEEVRPISIESNLLPMAHSSILFTRGQTQSLVVGVLGTDNDAQTHESLEHKAP 372
Query: 55 KHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIII 114
Y P G A S R+ G RAL + + I +
Sbjct: 373 IKERFMFHYNFPPFCVGEASSIGATSRRELGHGNL----AKRALETSIKNKDQ---VIRL 425
Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPI 174
++++++G + A++ +AL+ + D + V +G AI
Sbjct: 426 VSEILESNGSSSMASVCAGSLALYASGVEIHDLVAGVAMGMVSEGQDYAILSD------- 478
Query: 175 VDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
+ ED+ D+D G I +Q + + + + L AK ++K+
Sbjct: 479 --ISGLEDAEGDMDFKIAGNLEG-ITAMQMDTKMSGIQLEILYQTLLQAKRVREHILKIM 535
Query: 235 KDVISNEV 242
+ ++
Sbjct: 536 HEA-KEKI 542
Score = 63.7 bits (153), Expect = 2e-08, Method: Composition-based stats.
Identities = 34/224 (15%), Positives = 68/224 (30%), Gaps = 26/224 (11%)
Query: 20 VSKYAEGSCLVKFGDTHLLTTATLEEKV---PMWIRNTKHGWITAEYGMLPRSTGNRVKR 76
V+K A S L + G T +L + +E ++ + + G +P R
Sbjct: 20 VAKQATSSLLYRLGKTIILASVCVERELVSEDFLPLVVQFLEKSYAAGKIPGGFVKR--- 76
Query: 77 EAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVA 136
GR R+I R LR + QI + + + +A+ A A
Sbjct: 77 ---EGRAQDFEILTSRLIDRTLRPLFPKDYRYPTQITLMVLSHDIENDLQVSALNAASAA 133
Query: 137 LHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDS 196
L V+A + I++ + +D T
Sbjct: 134 LFLAHAAPFKS-------------VSACRIARIDNEFIINPSTSLLNQSSLDLFVSGTKE 180
Query: 197 GHIVEVQGSA---ERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
+ ++ + + + L LA+ + + L ++
Sbjct: 181 -SLNMIEMRSLGQKLNALEEPLMLEALELAQKSLKETCTLYEET 223
>gi|133918789|emb|CAL29599.1| polyribonucleotide nucleotidyltransferase [Rhizobium tropici]
Length = 180
Score = 114 bits (285), Expect = 1e-23, Method: Composition-based stats.
Identities = 32/167 (19%), Positives = 64/167 (38%), Gaps = 8/167 (4%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR + +R I + GS L G+T + ATL +E+ +
Sbjct: 7 RIDGRDLSTVRPIVSEVGLLPRTHGSALFTRGETQAIVVATLGTGEDEQYVDSLTGMYKE 66
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + + R+ G + RA+R ++ + + + +
Sbjct: 67 RFLLHYNFPPYSVGETGRMGSPGRREIGHGKL----AWRAIRPMLPSAEQFPYTLRVVSE 122
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAI 164
+ +++G + A + G +AL D + + +L+G A+
Sbjct: 123 ITESNGSSSMATVCGTSLALMDAGVPLAKPVAGIAMGLILEGDRFAV 169
>gi|133919178|emb|CAL29637.1| polyribonucleotide nucleotidyltransferase [Sinorhizobium medicae]
gi|133919180|emb|CAL29638.1| polyribonucleotide nucleotidyltransferase [Sinorhizobium medicae]
gi|133919182|emb|CAL29639.1| polyribonucleotide nucleotidyltransferase [Sinorhizobium medicae]
Length = 180
Score = 114 bits (285), Expect = 1e-23, Method: Composition-based stats.
Identities = 29/167 (17%), Positives = 60/167 (35%), Gaps = 8/167 (4%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +R I + GS L G+T + ATL +E+ +
Sbjct: 7 RIDGRDLVTVRPIVAEVGLLPRTHGSALFTRGETQAIVVATLGTGEDEQYVDSLTGMYKE 66
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + + R+ G + RA+ ++ + + + +
Sbjct: 67 NFMLHYNFPPYSVGETGRMGSPGRREIGHGKL----AWRAIHPMLPTAEQFPYTLRVVSE 122
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAI 164
+ +++G + A + G +AL D + + + + A+
Sbjct: 123 ITESNGSSSMATVCGTSLALMDAGVPLAKPVAGIAMGLIKEDDRFAV 169
>gi|133918827|emb|CAL29618.1| polyribonucleotide nucleotidyltransferase [Ensifer adhaerens]
gi|133918829|emb|CAL29619.1| polyribonucleotide nucleotidyltransferase [Ensifer adhaerens]
gi|133918831|emb|CAL29620.1| polyribonucleotide nucleotidyltransferase [Ensifer adhaerens]
Length = 180
Score = 114 bits (285), Expect = 1e-23, Method: Composition-based stats.
Identities = 31/178 (17%), Positives = 63/178 (35%), Gaps = 8/178 (4%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +R I V GS L G+T + ATL +E+ +
Sbjct: 7 RIDGRDLETVRPIVAEVGVLPRTHGSSLFTRGETQAIVVATLGTGEDEQYVDSLTGMYKE 66
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + + R+ G + RA+ ++ + + + +
Sbjct: 67 NFMLHYNFPPFSVGETGRMGSPGRREIGHGKL----AWRAIHPMLPTAEQFPYTLRVVSE 122
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIV 175
+ +++G + A + G +AL D + + + + A+ +L +
Sbjct: 123 ITESNGSSSMATVCGTSLALMDAGVPLAKPVAGIAMGLIKEDERFAVLSDILGDEDHL 180
>gi|18977939|ref|NP_579296.1| exosome complex RNA-binding protein Rrp42 [Pyrococcus furiosus DSM
3638]
gi|29336823|sp|Q8U0M0|ECX2_PYRFU RecName: Full=Probable exosome complex exonuclease 2
gi|18893709|gb|AAL81691.1| hypothetical protein PF1567 [Pyrococcus furiosus DSM 3638]
Length = 277
Score = 114 bits (285), Expect = 1e-23, Method: Composition-based stats.
Identities = 51/250 (20%), Positives = 90/250 (36%), Gaps = 13/250 (5%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R+ R R I + V + AEGS LVK G+T +L P + G +T
Sbjct: 24 RIDDRGFEDYRPIEVEVGVIEKAEGSALVKLGNTQVLVGIKATLGEP-FPDTPNMGVMTT 82
Query: 62 EYGMLPRSTGNRVK-REAVSGRQGGRSQEIQRMIGRALRSVVDLSALGS--RQIIIDCDV 118
++P ++ + R + RAL + A G R + ID V
Sbjct: 83 NVELVPLASPTFEPGPPDERAIELARVIDRGIRESRALNLEKMVIAPGKIVRVVFIDVHV 142
Query: 119 IQADGGTRTAAITGAWVALHDCLQHMEDCSN--------KFQLSQVLKGHVAAISCGMLC 170
+ DG A GA AL + + + + ++ +++ +
Sbjct: 143 LDHDGNLMDAIGIGAIAALLNARVPKVLYNEETGEVEILEEKEPLPVEKIPISVTFAKIG 202
Query: 171 GYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADL 230
Y +VD E+ +D ++GHI VQ S E F + + A + ++
Sbjct: 203 NYLVVDPTLEEEQIMDGRLTITTDETGHISAVQKS-EGGAFKLEEVMYAVETAFKKAEEI 261
Query: 231 IKLQKDVISN 240
K+ + +
Sbjct: 262 RKIILNALEK 271
>gi|261839934|gb|ACX99699.1| polynucleotide phosphorylase [Helicobacter pylori 52]
Length = 688
Score = 114 bits (284), Expect = 1e-23, Method: Composition-based stats.
Identities = 42/248 (16%), Positives = 79/248 (31%), Gaps = 24/248 (9%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRN------T 54
+R R ++R I + + A S L G T L L
Sbjct: 313 IRPDKRALEEVRPILIESDLLPMAHSSILFTRGQTQSLVVGVLGTDNDAQTHESLEHKAP 372
Query: 55 KHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIII 114
Y P G A S R+ G RAL + + + I +
Sbjct: 373 IKERFMFHYNFPPFCVGEASSIGATSRRELGHGNL----AKRALETSIKNK---EQVIRL 425
Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPI 174
++++++G + A++ +AL+ + D + V +G AI
Sbjct: 426 VSEILESNGSSSMASVCAGSLALYASGVEIYDLVAGVAMGMVSEGQNHAILSD------- 478
Query: 175 VDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
+ ED+ D+D G I +Q + + + + L AK ++K+
Sbjct: 479 --ISGLEDAEGDMDFKIAGNLEG-ITAMQMDTKMSGIQLEVLYQALLQAKKAREHILKIM 535
Query: 235 KDVISNEV 242
++
Sbjct: 536 HGA-KEKI 542
Score = 63.3 bits (152), Expect = 3e-08, Method: Composition-based stats.
Identities = 33/224 (14%), Positives = 68/224 (30%), Gaps = 26/224 (11%)
Query: 20 VSKYAEGSCLVKFGDTHLLTTATLEEKV---PMWIRNTKHGWITAEYGMLPRSTGNRVKR 76
V+K A S + + G T +L + +E + + + G +P R
Sbjct: 20 VAKQATSSLMYRLGKTIILASVCVEREPVSEDFLPLVVQFLEKSYAAGKIPGGFVKR--- 76
Query: 77 EAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVA 136
GR R+I R LR + QI + + + +A+ A A
Sbjct: 77 ---EGRAQDFEILTSRLIDRTLRPLFPKDYRYPTQITLMVLSHDIENDLQVSALNAASAA 133
Query: 137 LHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDS 196
L V+A + I++ + +D T
Sbjct: 134 LFLAHIAPIKS-------------VSACRIARVDNEFIINPSANLLNQSSLDLFVSGTKE 180
Query: 197 GHIVEVQGSA---ERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
+ ++ + + + L LA+ + + L +++
Sbjct: 181 -SLNMIEMRSLGQKLNALEEPLMLKALELAQKSLKETCTLYEEI 223
>gi|133918853|emb|CAL29631.1| polyribonucleotide nucleotidyltransferase [Sinorhizobium kostiense]
gi|133918855|emb|CAL29632.1| polyribonucleotide nucleotidyltransferase [Sinorhizobium kostiense]
Length = 180
Score = 114 bits (284), Expect = 1e-23, Method: Composition-based stats.
Identities = 29/167 (17%), Positives = 60/167 (35%), Gaps = 8/167 (4%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +R I + GS L G+T + ATL +E+ +
Sbjct: 7 RIDGRDLVTVRPIVAEVGLLPRTHGSALFTRGETQAIVVATLGTGEDEQYVDSLTGMYKE 66
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + + R+ G + RA+ ++ + + + +
Sbjct: 67 NFMLHYNFPPFSVGETGRLGSPGRREIGHGKL----AWRAIHPMLPTAEQFPYTLRVVSE 122
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAI 164
+ +++G + A + G +AL D + + + + A+
Sbjct: 123 ITESNGSSSMATVCGTSLALMDAGVPIAKPVAGIAMGLIKEDDRFAV 169
>gi|257076444|ref|ZP_05570805.1| exosome complex exonuclease Rrp41 [Ferroplasma acidarmanus fer1]
Length = 240
Score = 114 bits (284), Expect = 1e-23, Method: Composition-based stats.
Identities = 58/242 (23%), Positives = 107/242 (44%), Gaps = 22/242 (9%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+RL GR N+MR I + V + A+GS +++G ++ + E P +N +
Sbjct: 13 LRLDGRSLNEMRPIKIQTGVVERADGSAFIEWGANKIIVAVYVREAYPKHAQNIDRAIVK 72
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
A Y M S R + R+ EI +++ AL S + L L +I + V++
Sbjct: 73 ARYNMSGYSVEERKRPG-----PDRRTMEISKVVSEALSSAIVLEKLPRAEIDVFIQVLE 127
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
AD GTR A++T + VA+ D M D V + G G ++DL
Sbjct: 128 ADAGTRIASLTASSVAVADAGVPMRDL-------------VVGCTAGKADGKIVLDLSKD 174
Query: 181 EDSTIDVDANFVM-TDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
ED+ D + +G +V +Q + +++ F ++ D + + +LQ++ +
Sbjct: 175 EDNFGQADIPMAILPRTGKVVLLQLDGD---VTEEEFNEATSMMMDAMPRISELQRNALM 231
Query: 240 NE 241
++
Sbjct: 232 SK 233
>gi|315427141|dbj|BAJ48756.1| exosome complex component RRP41 [Candidatus Caldiarchaeum
subterraneum]
gi|315427160|dbj|BAJ48774.1| exosome complex component RRP41 [Candidatus Caldiarchaeum
subterraneum]
Length = 246
Score = 114 bits (284), Expect = 1e-23, Method: Composition-based stats.
Identities = 63/243 (25%), Positives = 104/243 (42%), Gaps = 23/243 (9%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKV-PMWIRNTKHGWI 59
+R+ GR+ ++MR++ + V + +GS V+ G T + +V P + G I
Sbjct: 15 LRVDGRRPDEMRKMRMEVGVLEKTDGSAYVELGGTRIYAGVIGPREVHPKHLELPDKGVI 74
Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119
Y M S R R E+ ++I AL +VV L I I +VI
Sbjct: 75 NCRYHMASFSVDERKPLGM-----TRREIELSKVIREALETVVFLEEFPRMMIDIFVEVI 129
Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179
QADGGTRTA IT A +AL D M D +AAI+ G + G ++D++
Sbjct: 130 QADGGTRTAGITAASLALADAGIPMAD-------------MIAAIAVGKVDGVLVLDINE 176
Query: 180 GEDSTIDVDANFVMTDS-GHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
ED + D + IV +Q + + + L +A+ + + +Q + +
Sbjct: 177 QEDKYGEADMPVAIAPHLNSIVLLQLNGR---MTPEEVDKGLEMAQQAVQKIHHMQIEAL 233
Query: 239 SNE 241
+
Sbjct: 234 KRK 236
>gi|302348936|ref|YP_003816574.1| Probable exosome complex exonuclease 1 [Acidilobus saccharovorans
345-15]
gi|302329348|gb|ADL19543.1| Probable exosome complex exonuclease 1 [Acidilobus saccharovorans
345-15]
Length = 242
Score = 114 bits (284), Expect = 1e-23, Method: Composition-based stats.
Identities = 60/243 (24%), Positives = 101/243 (41%), Gaps = 23/243 (9%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKV-PMWIRNTKHGWIT 60
RL GR ++MR + + V A+GS +V +G T +L + + +
Sbjct: 15 RLDGRLPDEMRPVDMKVGVLSNADGSAIVSYGKTKVLAAVYGPREPLQKYTVLPDRASLF 74
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
Y M P ST R R EI +++ AL VV I + +V+Q
Sbjct: 75 VRYHMAPFSTEERKSPV-----PTRREVEISKVLREALEPVVITELFPRTVIEVYVEVLQ 129
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
+DGGTRTA+ T A +AL D M VA ++ G + ++DL+
Sbjct: 130 SDGGTRTASATAASLALADAGIPMRAL-------------VAGVAIGKVDNVVVLDLNEP 176
Query: 181 EDSTIDVDANFVMTDS-GHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
ED+ + D V G I Q + + + L++A I++L++ +K +
Sbjct: 177 EDNFGEADMPVVAAPDLGLITLFQLNG---VMTVEETQKGLDMALKAISELVEKEKQTLR 233
Query: 240 NEV 242
+ +
Sbjct: 234 SSI 236
>gi|133918783|emb|CAL29596.1| polyribonucleotide nucleotidyltransferase [Agrobacterium
tumefaciens]
Length = 180
Score = 114 bits (284), Expect = 1e-23, Method: Composition-based stats.
Identities = 33/178 (18%), Positives = 67/178 (37%), Gaps = 8/178 (4%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR + +R I + GS L G+T + ATL +E+ +
Sbjct: 7 RIDGRDLSTVRPIVSEVGILPRTHGSALFTRGETQAIVVATLGTGEDEQYVDSLTGMYKE 66
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + + R+ G + RA+R ++ + + + +
Sbjct: 67 RFLLHYNFPPYSVGETGRMGSPGRREIGHGKL----AWRAIRPMLPTAEQFPYTLRVVSE 122
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIV 175
+ +++G + A + G +AL D + + +L+G A+ +L +
Sbjct: 123 ITESNGSSSMATVCGTSLALMDAGVPLAKPVAGIAMGLILEGERFAVLSDILGDEDHL 180
>gi|133918823|emb|CAL29616.1| polyribonucleotide nucleotidyltransferase [Rhizobium gallicum]
Length = 180
Score = 114 bits (284), Expect = 1e-23, Method: Composition-based stats.
Identities = 29/167 (17%), Positives = 59/167 (35%), Gaps = 8/167 (4%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +R I + GS L G+T + ATL +E+ +
Sbjct: 7 RIDGRDLATVRPIVAEVGLLPRTHGSALFTRGETQAIVVATLGTGEDEQYVDSLTGMYKE 66
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + + R+ G + RA+ ++ + + +
Sbjct: 67 NFMLHYNFPPYSVGETGRMGSPGRREIGHGKL----AWRAIHPMLPSVEQFPYTLRVVSE 122
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAI 164
+ +++G + A + G +AL D + + + + A+
Sbjct: 123 ITESNGSSSMATVCGTSLALMDAGVPLAKPVAGIAMGLIKEDERFAV 169
>gi|47848476|dbj|BAD22331.1| putative exosome component 4 [Oryza sativa Japonica Group]
gi|47848647|dbj|BAD22495.1| putative exosome component 4 [Oryza sativa Japonica Group]
Length = 245
Score = 114 bits (284), Expect = 1e-23, Method: Composition-based stats.
Identities = 56/265 (21%), Positives = 92/265 (34%), Gaps = 52/265 (19%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----- 55
R+ GR+ N+MR++ V A+GS L + G+T ++ +V
Sbjct: 10 FRVDGRRPNEMRQLKGEVGVVARADGSALFEMGNTRVIAAVYGPREVAAHPDYWLVRLIS 69
Query: 56 ----------------HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALR 99
M STG+R ++ R I +I + +
Sbjct: 70 KKAKREGLRGRSRTKVSKSTAKMLWMADFSTGDRRRKPKGDRRSTE----ISLVIRQTME 125
Query: 100 SVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKG 159
+ + + QI I V+QADGGTR A I A +AL D M D
Sbjct: 126 ASILTHLMPRSQIDIFVQVLQADGGTRAACINAATLALADAGIPMRDIVTSCSADL---- 181
Query: 160 HVAAISCGMLCGYPIVDLDYGEDSTIDVDANF-VMTDSGHIVEVQGSAERATFSQDHFFA 218
+Y EDS D +T + +Q A+ D F
Sbjct: 182 ------------------NYIEDSAGGPDVTVGFLTKMDKVTLLQMDAK---LPMDTFET 220
Query: 219 MLNLAKDRIADLIKLQKD-VISNEV 242
+++LA + + ++ +SN+V
Sbjct: 221 VMDLAIEGCKAIANYIRELSLSNDV 245
>gi|133918793|emb|CAL29601.1| polyribonucleotide nucleotidyltransferase [Rhizobium giardinii]
Length = 180
Score = 114 bits (284), Expect = 1e-23, Method: Composition-based stats.
Identities = 33/178 (18%), Positives = 67/178 (37%), Gaps = 8/178 (4%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR + +R I + GS L G+T + ATL +E+ +
Sbjct: 7 RIDGRDLSTVRPIVSEVGILPRTHGSALFTRGETQAIVVATLGTGEDEQYVDSLTGMYKE 66
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + + R+ G + RA+R ++ + + + +
Sbjct: 67 RFLLHYNFPPYSVGETGRMGSPGRREIGHGKL----AWRAIRPMLPSAEQFPYTLRVVSE 122
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIV 175
+ +++G + A + G +AL D + + +L+G A+ +L +
Sbjct: 123 ITESNGSSSMATVCGTSLALMDAGVPLAKPVAGIAMGLILEGERFAVLSDILGDEDHL 180
>gi|195031196|ref|XP_001988306.1| GH10637 [Drosophila grimshawi]
gi|193904306|gb|EDW03173.1| GH10637 [Drosophila grimshawi]
Length = 249
Score = 114 bits (284), Expect = 1e-23, Method: Composition-based stats.
Identities = 45/243 (18%), Positives = 89/243 (36%), Gaps = 20/243 (8%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+RL GR+ +++R I V + +GS ++ G+T +L + I
Sbjct: 13 LRLDGRRPHELRHIKCKLGVFEQPDGSAYMEQGNTKVLAAVYGPHQAKAKKSEGNDLIIN 72
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
+Y ST R R +SQE + + +AL + + QI I +V+Q
Sbjct: 73 CQYSQATFSTAERK----NRPRGDRKSQEFKMYLQQALSAAIKSELYPRSQIDIYVEVLQ 128
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADG ++ A +AL D + + VA + P+ D+ +
Sbjct: 129 ADGANYAVSLNAATLALIDAGI------------CLNEFVVACTASLSKSNIPLTDISHI 176
Query: 181 EDSTIDVDANF-VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
E+ + + + I ++ S F D ++ A ++ + + +
Sbjct: 177 EEVSGGPKLTIAALPTAEKIAFMEMS---ERFHIDQLETVIETAMAGCREIRDILEAAVK 233
Query: 240 NEV 242
+
Sbjct: 234 EHL 236
>gi|133918797|emb|CAL29603.1| polyribonucleotide nucleotidyltransferase [Ensifer adhaerens]
gi|133918799|emb|CAL29604.1| polyribonucleotide nucleotidyltransferase [Ensifer adhaerens]
gi|133918801|emb|CAL29605.1| polyribonucleotide nucleotidyltransferase [Ensifer adhaerens]
Length = 180
Score = 114 bits (284), Expect = 1e-23, Method: Composition-based stats.
Identities = 32/178 (17%), Positives = 64/178 (35%), Gaps = 8/178 (4%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +R I V GS L G+T + ATL +E+ +
Sbjct: 7 RIDGRDLETVRPIVSEVGVLPRTHGSALFTRGETQAIVVATLGTGEDEQYVDSLTGMYKE 66
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + + R+ G + RA+R ++ + + + +
Sbjct: 67 RFMLHYNFPPFSVGETGRMGSPGRREIGHGKL----AWRAIRPMLPEAEQFPYTLRVVSE 122
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIV 175
+ +++G + A + G +AL D + + + + A+ +L +
Sbjct: 123 ITESNGSSSMATVCGTSLALMDAGVPLAKPVAGIAMGLIKEDERFAVLSDILGDEDHL 180
>gi|133918807|emb|CAL29608.1| polyribonucleotide nucleotidyltransferase [Sinorhizobium
xinjiangense]
gi|133918809|emb|CAL29609.1| polyribonucleotide nucleotidyltransferase [Sinorhizobium
xinjiangense]
gi|133918811|emb|CAL29610.1| polyribonucleotide nucleotidyltransferase [Sinorhizobium fredii]
gi|133918813|emb|CAL29611.1| polyribonucleotide nucleotidyltransferase [Sinorhizobium fredii]
gi|133918815|emb|CAL29612.1| polyribonucleotide nucleotidyltransferase [Sinorhizobium fredii]
gi|133918817|emb|CAL29613.1| polyribonucleotide nucleotidyltransferase [Sinorhizobium fredii]
Length = 180
Score = 113 bits (283), Expect = 2e-23, Method: Composition-based stats.
Identities = 31/178 (17%), Positives = 64/178 (35%), Gaps = 8/178 (4%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +R I + GS L G+T + ATL +E+ +
Sbjct: 7 RIDGRDLETVRPIVSEVGLLPRTHGSALFTRGETQAIVVATLGTGEDEQYVDSLTGMYKE 66
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + + R+ G + RA+R ++ + + + +
Sbjct: 67 RFMLHYNFPPFSVGETGRMGSPGRREIGHGKL----AWRAIRPMLPEAEQFPYTLRVVSE 122
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIV 175
+ +++G + A + G +AL D + + + + A+ +L +
Sbjct: 123 ITESNGSSSMATVCGTSLALMDAGVPLAKPVAGIAMGLIKEEDRFAVLSDILGDEDHL 180
>gi|133918787|emb|CAL29598.1| polyribonucleotide nucleotidyltransferase [Rhizobium leguminosarum]
Length = 180
Score = 113 bits (283), Expect = 2e-23, Method: Composition-based stats.
Identities = 32/167 (19%), Positives = 62/167 (37%), Gaps = 8/167 (4%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +R I + GS L G+T + ATL +E+ +
Sbjct: 7 RIDGRDLETVRPIVSEVGLLPRTHGSALFTRGETQAIVVATLGTGEDEQYVDSLTGMYKE 66
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + + R+ G + RA+R ++ + + +
Sbjct: 67 RFLLHYNFPPYSVGETGRMGSPGRREIGHGKL----AWRAIRPMLPTVEQFPYTLRVVSE 122
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAI 164
+ +++G + A + G +AL D + + +L+G A+
Sbjct: 123 ITESNGSSSMATVCGTSLALMDAGVPLAKPVAGIAMGLILEGDRFAV 169
>gi|195398184|ref|XP_002057704.1| GJ18275 [Drosophila virilis]
gi|194141358|gb|EDW57777.1| GJ18275 [Drosophila virilis]
Length = 249
Score = 113 bits (283), Expect = 2e-23, Method: Composition-based stats.
Identities = 45/243 (18%), Positives = 89/243 (36%), Gaps = 20/243 (8%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+RL GR+ +++R I V + +GS ++ G+T +L + I
Sbjct: 13 LRLDGRRPHELRHIKCKLGVFEQPDGSAYMEQGNTKVLAAVYGPHQAKGKKTEGNDLIIN 72
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
+Y ST R R +SQE + + +AL + + QI I +V+Q
Sbjct: 73 CQYSQATFSTSERK----NRPRGDRKSQEFKMYLQQALSAAIKSELYPRSQIDIYVEVLQ 128
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADG ++ A +AL D + + VA + P+ D+ +
Sbjct: 129 ADGANYAVSLNAATLALIDAGI------------CLNEFVVACTASLSKSNIPLTDISHI 176
Query: 181 EDSTIDVDANF-VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
E+ + + + I ++ S F D ++ A ++ + + +
Sbjct: 177 EEVSGGPKLTIAALPTAEKIAFMEMS---ERFHIDQLETVIETAMAGCREIRDILESAVK 233
Query: 240 NEV 242
+
Sbjct: 234 EHL 236
>gi|309358906|emb|CAP33602.2| hypothetical protein CBG_15142 [Caenorhabditis briggsae AF16]
Length = 802
Score = 113 bits (283), Expect = 2e-23, Method: Composition-based stats.
Identities = 37/242 (15%), Positives = 85/242 (35%), Gaps = 18/242 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL--------EEKVPMWIR 52
+R GR+ R I + + K G + + G T +++T T + V +
Sbjct: 335 IRCDGRRPTDFRPIRIQVDMYKKLHGCSMFQRGQTQVMSTVTFDSPTAAFHPDSVAQLLG 394
Query: 53 NTKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQI 112
+ + Y +T + + S + + +AL+ + +
Sbjct: 395 SQRKKSFMLHYEFPSFATNDIGVSASRSLNRREIGH--GALAEKALKPLFPTG--FPYAV 450
Query: 113 IIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY 172
+ C V++++G + A++ G +AL+D M++ + + +
Sbjct: 451 RLACQVLESNGSSSMASVCGGSLALYDAGVPMKNAAAGVAIGLISDE-----KEPETNYK 505
Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
+ D+ ED D+D T +G Q + ++ L+ A+ I ++
Sbjct: 506 VLTDILGIEDYAGDMDFKIAGTKNG-FTAAQLDVKNDGLTRQQLRESLDAARAGIDHVLG 564
Query: 233 LQ 234
Sbjct: 565 KM 566
Score = 61.8 bits (148), Expect = 8e-08, Method: Composition-based stats.
Identities = 26/226 (11%), Positives = 56/226 (24%), Gaps = 21/226 (9%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGN 72
+ L ++++A + + GD ++ T + +G S
Sbjct: 38 LELKTGHMARFASAAVVASSGDNSVMATVV----QRKQKQGDGNGVPLQVEYRPSASAVG 93
Query: 73 RVKREAVSGR--QGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAI 130
R+ + Q I R I R++R + + I
Sbjct: 94 RIPTNFLRRELSQSDNEILISRAIDRSIRP-----LMPANSYETQVICKPLALDENADQI 148
Query: 131 TGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDAN 190
A L N + + V+ E ++
Sbjct: 149 MLGINAASSALHISSAPFNGPLAAIRVSMDPRG-------KIFHVNPGQEELKASSMNMI 201
Query: 191 FVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
M + V ++ E + L++A + L +
Sbjct: 202 VAMRRNQKTVMIELDGEETR--GEQLEEALDVAFQNVERLHVAMDE 245
>gi|284161629|ref|YP_003400252.1| 3' exoribonuclease [Archaeoglobus profundus DSM 5631]
gi|284011626|gb|ADB57579.1| 3' exoribonuclease [Archaeoglobus profundus DSM 5631]
Length = 259
Score = 113 bits (283), Expect = 2e-23, Method: Composition-based stats.
Identities = 50/244 (20%), Positives = 89/244 (36%), Gaps = 15/244 (6%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R+ GR +++R I + + K AEGS VK G+T ++ ++ P + G I
Sbjct: 23 RIDGRAFDEIRPIEIKTGLIKKAEGSAYVKLGNTQVVAGVKMQIGEP-FPDTPDQGIIIT 81
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSV--------VDLSALGSRQII 113
++P ++ G + E+ R++ R +R I
Sbjct: 82 NAELVPLASPTFEP-----GPPDENAIELARVVDRGIRHSEAVDLKKLCIEEGEKVWIIF 136
Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP 173
ID + DG A+ A AL + E ++ AI+ +
Sbjct: 137 IDIWALDDDGNLMDASALAAIAALLNTTVPAERFEVGDDFPLPVRDLPVAITSLVYDDKI 196
Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
+VD E S + +IV +Q S S+ F +L ++ + ++ KL
Sbjct: 197 LVDPCRDELSVGKNTITITTDQNDNIVSIQKSG-PFLLSEKAFEEVLEVSIRKAREVRKL 255
Query: 234 QKDV 237
DV
Sbjct: 256 LADV 259
>gi|70606424|ref|YP_255294.1| exosome complex RNA-binding protein Rrp42 [Sulfolobus
acidocaldarius DSM 639]
gi|68567072|gb|AAY80001.1| exosome complex exonuclease RRP43-like protein [Sulfolobus
acidocaldarius DSM 639]
Length = 276
Score = 113 bits (283), Expect = 2e-23, Method: Composition-based stats.
Identities = 57/255 (22%), Positives = 99/255 (38%), Gaps = 23/255 (9%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+RL GR+ N+ R++ +T +K AEGS LVK G+T +L LEE P + G +
Sbjct: 27 VRLDGRKPNEYRQLKVTLGYAKKAEGSALVKLGNTLVLAGVKLEEDSP-YPDTPNQGNLI 85
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSA--------LGSRQI 112
+LP + G S E+ R++ R+LR + +
Sbjct: 86 VNVELLPLAYETFEP-----GPPDENSIELARIVDRSLRDSKAIDLSKLVIAPGKKVWTL 140
Query: 113 IIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQ--------LSQVLKGHVAAI 164
+D V+ DG A + + A++D + ++ V +
Sbjct: 141 WVDVYVLDYDGNILDACMLASIAAIYDTKLPKVEVEGDEIKINKEERLSIPLVNYPVVTV 200
Query: 165 SCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAK 224
+ + Y +VD + E+S D + T G IV +Q + + AM + A+
Sbjct: 201 TTAKIGKYVVVDPNLDEESIADAKLSISYTKEGTIVGLQKNYSGN-LTFKEIDAMESTAR 259
Query: 225 DRIADLIKLQKDVIS 239
L + K I+
Sbjct: 260 ATSQFLFEELKKQIN 274
>gi|133918791|emb|CAL29600.1| polyribonucleotide nucleotidyltransferase [Rhizobium galegae]
Length = 180
Score = 113 bits (283), Expect = 2e-23, Method: Composition-based stats.
Identities = 33/178 (18%), Positives = 65/178 (36%), Gaps = 8/178 (4%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +R I + GS L G+T + ATL +E+ +
Sbjct: 7 RIDGRDLETVRPIVSEVGILPRTHGSALFTRGETQAIVVATLGTGEDEQYVDSLTGMYKE 66
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + + R+ G + RA+R ++ + + +
Sbjct: 67 RFLLHYNFPPYSVGETGRMGSPGRREIGHGKL----AWRAIRPMLPTVEQFPYTLRVVSE 122
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIV 175
+ +++G + A + G +AL D + + +L+G A+ +L +
Sbjct: 123 ITESNGSSSMATVCGTSLALMDAGVPLAKPVAGIAMGLILEGERFAVLSDILGDEDHL 180
>gi|133919186|emb|CAL29641.1| polyribonucleotide nucleotidyltransferase [Mesorhizobium
mediterraneum]
Length = 180
Score = 113 bits (283), Expect = 2e-23, Method: Composition-based stats.
Identities = 33/167 (19%), Positives = 63/167 (37%), Gaps = 8/167 (4%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +R+I V GS L G+T L ATL +E+ +
Sbjct: 7 RIDGRDLKTVRKIVSEVGVLPRTHGSALFTRGETQALVVATLGTGEDEQYVDSLTGMYKE 66
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + + R+ G + RA+R ++ + + + +
Sbjct: 67 KFLLHYNFPPYSVGETGRMGSPGRREIGHGKL----AWRAIRPMLPTADQFPYTLRVVSE 122
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAI 164
+ +++G + A + G +AL D + + + +G A+
Sbjct: 123 ITESNGSSSMATVCGTSLALMDAGVPLAKPVAGIAMGLIKEGERFAV 169
>gi|133918805|emb|CAL29607.1| polyribonucleotide nucleotidyltransferase [Ensifer adhaerens]
Length = 180
Score = 113 bits (282), Expect = 2e-23, Method: Composition-based stats.
Identities = 31/178 (17%), Positives = 64/178 (35%), Gaps = 8/178 (4%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +R I + GS L G+T + ATL +E+ +
Sbjct: 7 RIDGRDLETVRPIVSEVGLLPRTHGSALFTRGETQAIVVATLGTGEDEQYVDSLTGMYKE 66
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + + R+ G + RA+R ++ + + + +
Sbjct: 67 RFMLHYNFPPYSVGETGRMGSPGRREIGHGKL----AWRAIRPMLPEAEQFPYTLRVVSE 122
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIV 175
+ +++G + A + G +AL D + + + + A+ +L +
Sbjct: 123 ITESNGSSSMATVCGTSLALMDAGVPLAKPVAGIAMGLIKEDERFAVLSDILGDEDHL 180
>gi|126031137|pdb|2JE6|A Chain A, Structure Of A 9-Subunit Archaeal Exosome
gi|145579800|pdb|2JEA|A Chain A, Structure Of A 9-Subunit Archaeal Exosome Bound To Rna
gi|145579804|pdb|2JEB|A Chain A, Structure Of A 9-Subunit Archaeal Exosome Bound To Mn Ions
Length = 277
Score = 113 bits (282), Expect = 2e-23, Method: Composition-based stats.
Identities = 57/255 (22%), Positives = 94/255 (36%), Gaps = 23/255 (9%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+R GR+ R +S+T +K A+GS LVK G T +L LE P + G +
Sbjct: 29 IRQDGRKLTDYRPLSITLDYAKKADGSALVKLGTTMVLAGTKLEIDKP-YEDTPNQGNLI 87
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALG--------SRQI 112
+LP + G + E+ R++ R+LR L +
Sbjct: 88 VNVELLPLAYETFEP-----GPPDENAIELARVVDRSLRDSKALDLTKLVIEPGKSVWTV 142
Query: 113 IIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQL--------SQVLKGHVAAI 164
+D V+ G A + AL++ + + + L V I
Sbjct: 143 WLDVYVLDYGGNVLDACTLASVAALYNTKVYKVEQHSNGISVNKNEVVGKLPLNYPVVTI 202
Query: 165 SCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAK 224
S + Y +VD D E+S +D +F T IV +Q S + + S N A+
Sbjct: 203 SVAKVDKYLVVDPDLDEESIMDAKISFSYTPDLKIVGIQKSGK-GSMSLQDIDQAENTAR 261
Query: 225 DRIADLIKLQKDVIS 239
L++ K +
Sbjct: 262 STAVKLLEELKKHLG 276
>gi|15897635|ref|NP_342240.1| exosome complex RNA-binding protein Rrp42 [Sulfolobus solfataricus
P2]
gi|284174961|ref|ZP_06388930.1| exosome complex RNA-binding protein Rrp42 [Sulfolobus solfataricus
98/2]
gi|29337006|sp|Q9UXC0|ECX2_SULSO RecName: Full=Probable exosome complex exonuclease 2
gi|71042716|pdb|2BR2|A Chain A, Rnase Ph Core Of The Archaeal Exosome
gi|71042718|pdb|2BR2|C Chain C, Rnase Ph Core Of The Archaeal Exosome
gi|71042720|pdb|2BR2|E Chain E, Rnase Ph Core Of The Archaeal Exosome
gi|71042722|pdb|2BR2|G Chain G, Rnase Ph Core Of The Archaeal Exosome
gi|71042724|pdb|2BR2|I Chain I, Rnase Ph Core Of The Archaeal Exosome
gi|71042726|pdb|2BR2|K Chain K, Rnase Ph Core Of The Archaeal Exosome
gi|71042728|pdb|2BR2|M Chain M, Rnase Ph Core Of The Archaeal Exosome
gi|71042730|pdb|2BR2|O Chain O, Rnase Ph Core Of The Archaeal Exosome
gi|71042732|pdb|2BR2|Q Chain Q, Rnase Ph Core Of The Archaeal Exosome
gi|71042734|pdb|2BR2|S Chain S, Rnase Ph Core Of The Archaeal Exosome
gi|71042736|pdb|2BR2|U Chain U, Rnase Ph Core Of The Archaeal Exosome
gi|71042738|pdb|2BR2|W Chain W, Rnase Ph Core Of The Archaeal Exosome
gi|83754538|pdb|2C37|A Chain A, Rnase Ph Core Of The Archaeal Exosome In Complex With U8
Rna
gi|83754540|pdb|2C37|C Chain C, Rnase Ph Core Of The Archaeal Exosome In Complex With U8
Rna
gi|83754542|pdb|2C37|E Chain E, Rnase Ph Core Of The Archaeal Exosome In Complex With U8
Rna
gi|83754544|pdb|2C37|G Chain G, Rnase Ph Core Of The Archaeal Exosome In Complex With U8
Rna
gi|83754546|pdb|2C37|I Chain I, Rnase Ph Core Of The Archaeal Exosome In Complex With U8
Rna
gi|83754548|pdb|2C37|K Chain K, Rnase Ph Core Of The Archaeal Exosome In Complex With U8
Rna
gi|83754550|pdb|2C37|M Chain M, Rnase Ph Core Of The Archaeal Exosome In Complex With U8
Rna
gi|83754552|pdb|2C37|O Chain O, Rnase Ph Core Of The Archaeal Exosome In Complex With U8
Rna
gi|83754554|pdb|2C37|Q Chain Q, Rnase Ph Core Of The Archaeal Exosome In Complex With U8
Rna
gi|83754556|pdb|2C37|S Chain S, Rnase Ph Core Of The Archaeal Exosome In Complex With U8
Rna
gi|83754558|pdb|2C37|U Chain U, Rnase Ph Core Of The Archaeal Exosome In Complex With U8
Rna
gi|83754560|pdb|2C37|W Chain W, Rnase Ph Core Of The Archaeal Exosome In Complex With U8
Rna
gi|83754562|pdb|2C38|A Chain A, Rnase Ph Core Of The Archaeal Exosome In Complex With A5
Rna
gi|83754566|pdb|2C38|E Chain E, Rnase Ph Core Of The Archaeal Exosome In Complex With A5
Rna
gi|83754568|pdb|2C38|G Chain G, Rnase Ph Core Of The Archaeal Exosome In Complex With A5
Rna
gi|83754570|pdb|2C38|I Chain I, Rnase Ph Core Of The Archaeal Exosome In Complex With A5
Rna
gi|83754572|pdb|2C38|K Chain K, Rnase Ph Core Of The Archaeal Exosome In Complex With A5
Rna
gi|83754574|pdb|2C38|M Chain M, Rnase Ph Core Of The Archaeal Exosome In Complex With A5
Rna
gi|83754576|pdb|2C38|O Chain O, Rnase Ph Core Of The Archaeal Exosome In Complex With A5
Rna
gi|83754578|pdb|2C38|Q Chain Q, Rnase Ph Core Of The Archaeal Exosome In Complex With A5
Rna
gi|83754580|pdb|2C38|S Chain S, Rnase Ph Core Of The Archaeal Exosome In Complex With A5
Rna
gi|83754582|pdb|2C38|U Chain U, Rnase Ph Core Of The Archaeal Exosome In Complex With A5
Rna
gi|83754586|pdb|2C39|A Chain A, Rnase Ph Core Of The Archaeal Exosome In Complex With Adp
gi|83754588|pdb|2C39|C Chain C, Rnase Ph Core Of The Archaeal Exosome In Complex With Adp
gi|83754590|pdb|2C39|E Chain E, Rnase Ph Core Of The Archaeal Exosome In Complex With Adp
gi|83754592|pdb|2C39|G Chain G, Rnase Ph Core Of The Archaeal Exosome In Complex With Adp
gi|83754594|pdb|2C39|I Chain I, Rnase Ph Core Of The Archaeal Exosome In Complex With Adp
gi|83754596|pdb|2C39|K Chain K, Rnase Ph Core Of The Archaeal Exosome In Complex With Adp
gi|83754598|pdb|2C39|M Chain M, Rnase Ph Core Of The Archaeal Exosome In Complex With Adp
gi|83754600|pdb|2C39|O Chain O, Rnase Ph Core Of The Archaeal Exosome In Complex With Adp
gi|83754602|pdb|2C39|Q Chain Q, Rnase Ph Core Of The Archaeal Exosome In Complex With Adp
gi|83754604|pdb|2C39|S Chain S, Rnase Ph Core Of The Archaeal Exosome In Complex With Adp
gi|83754606|pdb|2C39|U Chain U, Rnase Ph Core Of The Archaeal Exosome In Complex With Adp
gi|83754608|pdb|2C39|W Chain W, Rnase Ph Core Of The Archaeal Exosome In Complex With Adp
gi|313507220|pdb|2C38|C Chain C, Rnase Ph Core Of The Archaeal Exosome In Complex With A5
Rna
gi|313507221|pdb|2C38|W Chain W, Rnase Ph Core Of The Archaeal Exosome In Complex With A5
Rna
gi|6015744|emb|CAB57571.1| conserved hypothetical protein [Sulfolobus solfataricus P2]
gi|13813902|gb|AAK41030.1| Conserved hypothetical protein [Sulfolobus solfataricus P2]
gi|261602404|gb|ACX92007.1| 3' exoribonuclease [Sulfolobus solfataricus 98/2]
Length = 275
Score = 113 bits (282), Expect = 2e-23, Method: Composition-based stats.
Identities = 57/255 (22%), Positives = 94/255 (36%), Gaps = 23/255 (9%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+R GR+ R +S+T +K A+GS LVK G T +L LE P + G +
Sbjct: 27 IRQDGRKLTDYRPLSITLDYAKKADGSALVKLGTTMVLAGTKLEIDKP-YEDTPNQGNLI 85
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALG--------SRQI 112
+LP + G + E+ R++ R+LR L +
Sbjct: 86 VNVELLPLAYETFEP-----GPPDENAIELARVVDRSLRDSKALDLTKLVIEPGKSVWTV 140
Query: 113 IIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQL--------SQVLKGHVAAI 164
+D V+ G A + AL++ + + + L V I
Sbjct: 141 WLDVYVLDYGGNVLDACTLASVAALYNTKVYKVEQHSNGISVNKNEVVGKLPLNYPVVTI 200
Query: 165 SCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAK 224
S + Y +VD D E+S +D +F T IV +Q S + + S N A+
Sbjct: 201 SVAKVDKYLVVDPDLDEESIMDAKISFSYTPDLKIVGIQKSGK-GSMSLQDIDQAENTAR 259
Query: 225 DRIADLIKLQKDVIS 239
L++ K +
Sbjct: 260 STAVKLLEELKKHLG 274
>gi|320101498|ref|YP_004177090.1| ribosomal RNA-processing protein RRP42 [Desulfurococcus mucosus DSM
2162]
gi|319753850|gb|ADV65608.1| ribosomal RNA-processing protein RRP42 [Desulfurococcus mucosus DSM
2162]
Length = 286
Score = 113 bits (282), Expect = 2e-23, Method: Composition-based stats.
Identities = 50/255 (19%), Positives = 94/255 (36%), Gaps = 23/255 (9%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R+ GR R + + + A GS LV+ G T ++ LE P + G +
Sbjct: 28 RIDGRGLYDYRPLEVVLNPIQKASGSSLVRLGGTQVIAGVKLELGEP-FPDRPNEGVLQV 86
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSAL--------GSRQII 113
+P ++ + G S EI R+I R+LR + +
Sbjct: 87 HAEFVPLASPSFEP-----GPPDENSIEIARIIDRSLREPKAVKLDTLVVEPGKVVWVVF 141
Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQH--------MEDCSNKFQLSQVLKGHVAAIS 165
D ++ G A++ + +AL + K + V ++
Sbjct: 142 DDIYLVDHQGNITDASMMASMLALATARIPGLVKTETGYRVDNTKQTGPLPINTLVVTVT 201
Query: 166 CGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKD 225
G+ +VD E++ +D + ++G I VQ FS++ +N A
Sbjct: 202 MGIYGDTIVVDPSLEEEAVLDSFLTIAVDEAGRICGVQKRG-MKGFSRNTLENAVNTALS 260
Query: 226 RIADLIKLQKDVISN 240
+ DLI+L + +++N
Sbjct: 261 KGRDLIELLRKILNN 275
>gi|133918803|emb|CAL29606.1| polyribonucleotide nucleotidyltransferase [Ensifer adhaerens]
gi|133918819|emb|CAL29614.1| polyribonucleotide nucleotidyltransferase [Ensifer adhaerens]
Length = 180
Score = 113 bits (282), Expect = 2e-23, Method: Composition-based stats.
Identities = 31/178 (17%), Positives = 64/178 (35%), Gaps = 8/178 (4%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +R I + GS L G+T + ATL +E+ +
Sbjct: 7 RIDGRDLETVRPIVSEVGLLPRTHGSALFTRGETQAIVVATLGTGEDEQYVDSLTGMYKE 66
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + + R+ G + RA+R ++ + + + +
Sbjct: 67 RFMLHYNFPPFSVGETGRMGSPGRREIGHGKL----AWRAIRPMLPEAEQFPYTLRVVSE 122
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIV 175
+ +++G + A + G +AL D + + + + A+ +L +
Sbjct: 123 ITESNGSSSMATVCGTSLALMDAGVPLAKPVAGIAMGLIKEDERFAVLSDILGDEDHL 180
>gi|256370772|ref|YP_003108597.1| putative polyribonucleotide nucleotidyltransferase [Candidatus
Sulcia muelleri SMDSEM]
gi|256009564|gb|ACU52924.1| putative polyribonucleotide nucleotidyltransferase [Candidatus
Sulcia muelleri SMDSEM]
Length = 691
Score = 113 bits (282), Expect = 2e-23, Method: Composition-based stats.
Identities = 47/241 (19%), Positives = 88/241 (36%), Gaps = 18/241 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHG 57
RL GR + +R+I GS + G+T L+T T L+ +
Sbjct: 319 RLDGRSLDDLRKIWSQTNFLPSVHGSAIFSRGETQALSTVTLGSSLDVNKIDNVILQDQQ 378
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P STG + +S R+ G RAL++++ I + D
Sbjct: 379 KFYLHYNFPPFSTGEIKLLKGISRREIGHGNL----AQRALKNIIP--FKTPYTIRVVSD 432
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+++++G + A + + +AL D ++ + + ++ + D+
Sbjct: 433 ILESNGSSSMATVCASTLALMDAGIPIKRPVSGISMGLIINFLT-------DEAIILSDI 485
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
ED+ D+D T G I Q + + + AK+ + LIK +
Sbjct: 486 LGDEDNIGDMDFKMTGTKFG-ITACQMDINFPGSNYEMLLNSIFKAKNCLLFLIKKILNT 544
Query: 238 I 238
I
Sbjct: 545 I 545
Score = 76.8 bits (187), Expect = 2e-12, Method: Composition-based stats.
Identities = 41/232 (17%), Positives = 77/232 (33%), Gaps = 27/232 (11%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRN----TKHGWITAEYGMLPR 68
IS+ ++ A G+ +V+ G T L+ T + +K I + + G +P
Sbjct: 18 ISIETGKLACQANGTAVVRMGKTSLIATIVISKKEKEGINFLPLIIDYKENYSAGGKIPG 77
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
R + R R+I R LR + + L QIII +
Sbjct: 78 GFIKRER------RPSDEEVLTMRLIDRLLRPLFPQNFLKEIQIIIYLLSYDRNVLPDG- 130
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
L + + KG V+A+ +++ D++
Sbjct: 131 ------------LAGLVASAAVSISGIPFKGPVSAVRIIRFKNSFLINPGIKSVKKSDIN 178
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
T + I+ ++ E S++ + +A I I Q ++I N
Sbjct: 179 LIIGGTKN-SILMIE--GEMKEISENEIIYFIKIAHFFIKLQITAQINLIKN 227
>gi|195116638|ref|XP_002002859.1| GI10716 [Drosophila mojavensis]
gi|193913434|gb|EDW12301.1| GI10716 [Drosophila mojavensis]
Length = 249
Score = 113 bits (282), Expect = 2e-23, Method: Composition-based stats.
Identities = 45/243 (18%), Positives = 89/243 (36%), Gaps = 20/243 (8%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+RL GR+ +++R I V + +GS ++ G+T +L + I
Sbjct: 13 LRLDGRRPHELRHIKCKLGVFEQPDGSAYMEQGNTKVLAAVYGPHQAKGKKTEGNDLVIN 72
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
+Y ST R R +SQE + + +AL + + QI I +V+Q
Sbjct: 73 CQYSQATFSTSERK----NRPRGDRKSQEFKMYLQQALSAAIKSELYPRSQIDIYVEVLQ 128
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADG ++ A +AL D + + VA + P+ D+ +
Sbjct: 129 ADGANYAVSLNAATLALIDAGI------------CLNEFVVACTASLSNANIPLTDISHI 176
Query: 181 EDSTIDVDANF-VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
E+ + + + I ++ S F D ++ A ++ + + +
Sbjct: 177 EEVSGGPKLTIAALPTAEKIAFMEMS---ERFHIDQLETVIETAMAGCREIRDILESAVK 233
Query: 240 NEV 242
+
Sbjct: 234 EHL 236
>gi|299689088|pdb|3L7Z|A Chain A, Crystal Structure Of The S. Solfataricus Archaeal Exosome
gi|299689091|pdb|3L7Z|D Chain D, Crystal Structure Of The S. Solfataricus Archaeal Exosome
gi|299689094|pdb|3L7Z|G Chain G, Crystal Structure Of The S. Solfataricus Archaeal Exosome
Length = 271
Score = 113 bits (282), Expect = 2e-23, Method: Composition-based stats.
Identities = 58/251 (23%), Positives = 95/251 (37%), Gaps = 19/251 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+R GR+ R +S+T +K A+GS LVK G T +L LE P + G +
Sbjct: 27 IRQDGRKLTDYRPLSITLDYAKKADGSALVKLGTTMVLAGTKLEIDKP-YEDTPNQGNLI 85
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALG--------SRQI 112
+LP + G + E+ R++ R+LR L +
Sbjct: 86 VNVELLPLAYTTFEP-----GPPDENAIELARVVDRSLRDSKALDLTKLVIEPGKSVWTV 140
Query: 113 IIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDC----SNKFQLSQVLKGHVAAISCGM 168
+D V+ G A + AL++ + + N+ L V IS
Sbjct: 141 WLDVYVLDYGGNVLDACTLASVAALYNTKVYKVEQISVNKNEVVGKLPLNYPVVTISVAK 200
Query: 169 LCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIA 228
+ Y +VD D E+S +D +F T IV +Q S + + S N A+
Sbjct: 201 VDKYLVVDPDLDEESIMDAKISFSYTPDLKIVGIQKSGK-GSMSLQDIDQAENTARSTAV 259
Query: 229 DLIKLQKDVIS 239
L++ K +
Sbjct: 260 KLLEELKKHLG 270
>gi|195351217|ref|XP_002042132.1| GM25757 [Drosophila sechellia]
gi|194123956|gb|EDW45999.1| GM25757 [Drosophila sechellia]
Length = 246
Score = 113 bits (282), Expect = 3e-23, Method: Composition-based stats.
Identities = 46/243 (18%), Positives = 88/243 (36%), Gaps = 23/243 (9%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+RL GR+ +++R I V + +GS ++ G+T +L + N I
Sbjct: 13 LRLDGRRPHELRRIKCKLGVFEQPDGSAYMEQGNTKVLAAVYGPHQAKG---NQTESVIN 69
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
+Y ST R R +S E + + +AL + + QI I +V+Q
Sbjct: 70 CQYSQATFSTAERK----NRPRGDRKSLEFKMYLQQALSAAIKSELYPRSQIDIYVEVLQ 125
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
DG A+ A +AL D + + VA + P+ D+
Sbjct: 126 DDGANYAVALNAATLALIDAGI------------CLNEFIVACTASLSKSNIPLTDISQF 173
Query: 181 EDSTIDVDANF-VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
E+ + + + I ++ S F DH ++ A ++ + + +
Sbjct: 174 EEVSGGPKLTVAALPTAEKIAFLEMS---ERFHIDHLETVIETAMAGCREIRDILEAAVK 230
Query: 240 NEV 242
+
Sbjct: 231 EHL 233
>gi|168063069|ref|XP_001783497.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162664987|gb|EDQ51687.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 246
Score = 113 bits (281), Expect = 3e-23, Method: Composition-based stats.
Identities = 62/242 (25%), Positives = 97/242 (40%), Gaps = 22/242 (9%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW-IRNTKHGWI 59
+RL GR+ +MR + V A+GS L G+T ++ +V + +
Sbjct: 11 LRLDGRRPPEMRHLHAVVGVVPSADGSALFHMGNTQVMAVVYGPHEVHNKAHQLHDKALV 70
Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119
EY M STG R +R R S I + + A+ + + QI I V+
Sbjct: 71 RCEYSMAAFSTGERRRRGKTDRRATELSLVIGQTLEAAIMTHLL----PRSQIDIYVQVL 126
Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179
QADGGTR A I A +AL D M D V + + G L P++DL+Y
Sbjct: 127 QADGGTRAACINAASMALADAGIPMRDL-------------VVSCAAGYLNSTPLLDLNY 173
Query: 180 GEDSTIDVDANF-VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
EDS D + +Q ++ S + F +L LA + + ++ +
Sbjct: 174 QEDSGGGPDLVVGYFPKLEKLSLLQMDSK---VSIETFEKVLELATEGAKAVATFTREKL 230
Query: 239 SN 240
Sbjct: 231 LE 232
>gi|14591332|ref|NP_143410.1| exosome complex RNA-binding protein Rrp42 [Pyrococcus horikoshii
OT3]
gi|29336585|sp|O59224|ECX2_PYRHO RecName: Full=Probable exosome complex exonuclease 2
gi|3257977|dbj|BAA30660.1| 274aa long hypothetical autoantigen like protein [Pyrococcus
horikoshii OT3]
Length = 274
Score = 113 bits (281), Expect = 3e-23, Method: Composition-based stats.
Identities = 46/250 (18%), Positives = 85/250 (34%), Gaps = 13/250 (5%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R+ R R I + + + AEGS LVK G T +L P + G +T
Sbjct: 24 RIDDRGFEDYRPIEIEVGIIEKAEGSALVKLGSTQVLVGIKTTLGEP-FPDTPNMGVMTT 82
Query: 62 EYGMLPRSTGNRVK-REAVSGRQGGRSQEIQRMIGRALRSVVDLSALGS--RQIIIDCDV 118
++P ++ + R + RAL + G R + ID V
Sbjct: 83 NVELVPLASPTFEPGPPDERAIELARVTDRGIRESRALNLEKMVIVPGKIVRVVFIDVHV 142
Query: 119 IQADGGTRTAAITGAWVALHDCLQHMEDCSN--------KFQLSQVLKGHVAAISCGMLC 170
+ DG A + AL + + + + + ++ ++ +
Sbjct: 143 LDHDGNLMDAIGIASIAALLNAKVPKVEYNEETGEVEILEEKEPLPVERIPIPVTFAKIG 202
Query: 171 GYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADL 230
+VD E+ +D ++GHI VQ E F + + A + ++
Sbjct: 203 NILVVDPSLEEELVMDGRLTVTTDETGHISAVQK-GEGGAFKLEEVMYAVETAFKKAEEI 261
Query: 231 IKLQKDVISN 240
K+ + I
Sbjct: 262 RKIVLEAIKK 271
>gi|237739458|ref|ZP_04569939.1| ribonuclease PH [Fusobacterium sp. 2_1_31]
gi|229423066|gb|EEO38113.1| ribonuclease PH [Fusobacterium sp. 2_1_31]
Length = 171
Score = 113 bits (281), Expect = 3e-23, Method: Composition-based stats.
Identities = 79/164 (48%), Positives = 111/164 (67%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+R GR+ N+ R+I +T+ V+ YAEGS L++ G+T ++ TA++ EKVP ++R T GW+T
Sbjct: 2 LREDGRKFNEERKIKITKDVNIYAEGSVLIEVGNTKVICTASVSEKVPPFLRGTGKGWVT 61
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEY MLPR+T R +REA G+ GR+ EIQR+IGRALRS +DL LG R I IDCDVIQ
Sbjct: 62 AEYSMLPRATNERNQREASKGKLTGRTVEIQRLIGRALRSAIDLEKLGERLITIDCDVIQ 121
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAI 164
ADGGTRT +ITG +VAL ++ + + + ++
Sbjct: 122 ADGGTRTTSITGGYVALALAIKKLLKEEILEENPLIANVAAISV 165
>gi|133918833|emb|CAL29621.1| polyribonucleotide nucleotidyltransferase [Sinorhizobium terangae]
gi|133918835|emb|CAL29622.1| polyribonucleotide nucleotidyltransferase [Sinorhizobium terangae]
gi|133918837|emb|CAL29623.1| polyribonucleotide nucleotidyltransferase [Sinorhizobium terangae]
Length = 180
Score = 113 bits (281), Expect = 3e-23, Method: Composition-based stats.
Identities = 30/178 (16%), Positives = 63/178 (35%), Gaps = 8/178 (4%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +R I + GS L G+T + ATL +E+ +
Sbjct: 7 RIDGRDLVTVRPIVAEVGILPRTHGSSLFTRGETQAIVVATLGTGEDEQYVDSLTGMYKE 66
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + + R+ G + RA+ ++ + + + +
Sbjct: 67 NFMLHYNFPPFSVGETGRMGSPGRREIGHGKL----AWRAIHPMLPTAEQFPYTLRVVSE 122
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIV 175
+ +++G + A + G +AL D + + + + A+ +L +
Sbjct: 123 ITESNGSSSMATVCGTSLALMDAGVPLAKPVAGIAMGLIKEDDRFAVLSDILGDEDHL 180
>gi|24584046|ref|NP_609618.2| Ski6 [Drosophila melanogaster]
gi|7298022|gb|AAF53263.1| Ski6 [Drosophila melanogaster]
gi|201065945|gb|ACH92382.1| FI07225p [Drosophila melanogaster]
Length = 246
Score = 113 bits (281), Expect = 3e-23, Method: Composition-based stats.
Identities = 46/243 (18%), Positives = 88/243 (36%), Gaps = 23/243 (9%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+RL GR+ +++R I V + +GS ++ G+T +L + N I
Sbjct: 13 LRLDGRRPHELRRIKCKLGVFEQPDGSAYMEQGNTKVLAAVYGPHQAKG---NQTESVIN 69
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
+Y ST R R +S E + + +AL + + QI I +V+Q
Sbjct: 70 CQYSQATFSTAERK----NRPRGDRKSLEFKLYLQQALSAAIKSELYPRSQIDIYVEVLQ 125
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
DG A+ A +AL D + + VA + P+ D+
Sbjct: 126 DDGANYAVALNAATLALIDAGI------------CLNEFIVACTASLSKSNIPLTDISQF 173
Query: 181 EDSTIDVDANF-VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
E+ + + + I ++ S F DH ++ A ++ + + +
Sbjct: 174 EEVSGGPKLTVAALPTAEKIAFLEMS---ERFHIDHLETVIETAMAGCREIRDILEAAVK 230
Query: 240 NEV 242
+
Sbjct: 231 EHL 233
>gi|315229928|ref|YP_004070364.1| exosome complex exonuclease 2 [Thermococcus barophilus MP]
gi|315182956|gb|ADT83141.1| exosome complex exonuclease 2 [Thermococcus barophilus MP]
Length = 270
Score = 113 bits (281), Expect = 3e-23, Method: Composition-based stats.
Identities = 50/256 (19%), Positives = 97/256 (37%), Gaps = 23/256 (8%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R+ GR +R + + V + AEGS VK G+T +L L+ P + G +T
Sbjct: 21 RIDGRSLEDLRPLEVKVNVIEKAEGSAWVKLGNTQVLVGIKLDLGEP-FPDLPDKGVMTT 79
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALG--------SRQII 113
++P ++ G R+ E+ R++ R +R + R +
Sbjct: 80 NVELVPLASPTFEP-----GPPDERAIELARVVDRGIRESQAIDLEKLVIIPGKLVRVVF 134
Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNK--------FQLSQVLKGHVAAIS 165
ID V+ DG A GA AL + + + + +S
Sbjct: 135 IDVHVLDHDGNLVDATGIGAIAALLSTKMPKIEYNEETGEVMMLDEYEPLPVTKIPIPVS 194
Query: 166 CGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKD 225
+ G +VD + E+ +D ++G+I VQ S E +F + +++A
Sbjct: 195 FAKIGGTIVVDPNLEEEHVMDGKLTITTDENGYISAVQKS-EGGSFKLEEVMYAVDVAFK 253
Query: 226 RIADLIKLQKDVISNE 241
+ ++ + + + +
Sbjct: 254 KAQEIREKILEAVGKK 269
>gi|156400116|ref|XP_001638846.1| predicted protein [Nematostella vectensis]
gi|156225970|gb|EDO46783.1| predicted protein [Nematostella vectensis]
Length = 710
Score = 113 bits (281), Expect = 3e-23, Method: Composition-based stats.
Identities = 47/246 (19%), Positives = 85/246 (34%), Gaps = 15/246 (6%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE--------EKVPMWIRN 53
R GRQ +++R I + K GS L K G+T + +TAT + + +
Sbjct: 305 RCDGRQFDELRSIDCDINLYKTLHGSSLFKRGETQVFSTATFGSVGSAAKVDTISEAVGG 364
Query: 54 TKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQII 113
+K Y P ST +R R R + RAL V+ +
Sbjct: 365 SKEKQFMLHYEFPPFSTNEVKQRRGSFDR---REIGHGALAERALVPVLPDELPF--TLR 419
Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGH-VAAISCGMLCGY 172
+ +V+ ++G + A+ +A+ D ++ V A +
Sbjct: 420 LTAEVLGSNGSSSLASACAGSLAMMDAGVPIKSHVAGSACGLVTSSDAEDASKRDIDNYQ 479
Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
+ D+ ED D+D T G I +Q + + A ++
Sbjct: 480 LLTDILGIEDYLGDMDFKIAGTRQG-ITALQADFKVPGLPVAIVEEAIRRCSVDRAKVLD 538
Query: 233 LQKDVI 238
+ ++VI
Sbjct: 539 VMEEVI 544
Score = 78.0 bits (190), Expect = 1e-12, Method: Composition-based stats.
Identities = 40/229 (17%), Positives = 79/229 (34%), Gaps = 26/229 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTA---TLEEKVPMWIRNTKHGWITAEYGMLP 67
R++ + ++ A+GS + ++ DT +L TA + + + ++P
Sbjct: 2 RQLKFSTGKLALLADGSTVTQYEDTSVLVTAISSKKPSENSFLPLVVDYKEKASAACLIP 61
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
+ R R + R I R++RS+ QII
Sbjct: 62 TTFLRRDLLAN------EREILVCRRIDRSVRSLFMKGYTYDTQIISHLLAADRFNNPDV 115
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
A+ G ++ S +G V A+ G + G +V+ + +
Sbjct: 116 VAVNG-------------ASASLALSSIPWRGPVGAVRIGDVDGQLVVNPLRQQLEHSQL 162
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
D ++S IV V+G A+ + + LA +I+ K+
Sbjct: 163 DLVVTSSES-KIVMVEGFAKEVP--DERLCEAIKLAFSEAQPIIQAIKE 208
>gi|195996065|ref|XP_002107901.1| hypothetical protein TRIADDRAFT_51876 [Trichoplax adhaerens]
gi|190588677|gb|EDV28699.1| hypothetical protein TRIADDRAFT_51876 [Trichoplax adhaerens]
Length = 243
Score = 113 bits (281), Expect = 3e-23, Method: Composition-based stats.
Identities = 49/243 (20%), Positives = 87/243 (35%), Gaps = 19/243 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKV-PMWIRNTKHGWI 59
+R+ GR+ ++R + V A+GS ++ G+T L + + I
Sbjct: 9 LRIDGRRPEEIRRFNCRLGVLSRADGSAYLEQGNTKALASINGPHQAGDKAKIKHDRVHI 68
Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119
+Y M ST R R R SQ ++ + A+ + QI I ++
Sbjct: 69 NFQYSMATFSTNERRNRPKGDKRSIDISQLMREIFQSAILT----DLYPKSQIDIHVQIL 124
Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179
QADGG +A I A +AL D M+D S V + ++
Sbjct: 125 QADGGNYSACINAATLALMDAGVPMKDFICSCTASLVDSKTIIDVNNSE----------- 173
Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
+ + ++ S I+ Q ++ DH +L D+ ++ +
Sbjct: 174 ELHFSNPLLTLAILPTSEEIILCQM---KSRLHADHLEDILKAGIKGCKDIYEIMHREVL 230
Query: 240 NEV 242
N V
Sbjct: 231 NHV 233
>gi|194761146|ref|XP_001962793.1| GF15621 [Drosophila ananassae]
gi|190616490|gb|EDV32014.1| GF15621 [Drosophila ananassae]
Length = 249
Score = 112 bits (280), Expect = 4e-23, Method: Composition-based stats.
Identities = 47/243 (19%), Positives = 92/243 (37%), Gaps = 20/243 (8%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+RL GR+ +++R I V + +GS ++ G+T +L + + I
Sbjct: 13 LRLDGRRPHELRHIQCKLGVFEQPDGSAYMEQGNTKVLAAVYGPHQAKGKKTESNDVIIN 72
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
+Y ST R R +SQE + + +AL + + QI + +V+Q
Sbjct: 73 CQYSQATFSTAERK----NRPRGDRKSQEFKMYLQQALSAAIKSELYPRSQIDVYVEVLQ 128
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADG A+ A +AL D + + VA + P+ D+ +
Sbjct: 129 ADGANYAVALNAATLALIDAGI------------CLNELIVACTASLSKNNIPLTDISHI 176
Query: 181 EDSTIDVDANF-VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
E+ + + + I ++ S F DH ++ A ++ + + V+
Sbjct: 177 EEVSGGPKLTVAALPTAQKIAFLEMS---ERFHIDHLETVIETAMAGCREIRDILEAVVK 233
Query: 240 NEV 242
+
Sbjct: 234 EHL 236
>gi|133918847|emb|CAL29628.1| polyribonucleotide nucleotidyltransferase [Sinorhizobium saheli]
gi|133918849|emb|CAL29629.1| polyribonucleotide nucleotidyltransferase [Sinorhizobium saheli]
gi|133918851|emb|CAL29630.1| polyribonucleotide nucleotidyltransferase [Sinorhizobium saheli]
Length = 180
Score = 112 bits (280), Expect = 4e-23, Method: Composition-based stats.
Identities = 29/167 (17%), Positives = 61/167 (36%), Gaps = 8/167 (4%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +R I + GS + G+T + ATL +E+ +
Sbjct: 7 RIDGRDLVTVRPIVAEVGLLPRTHGSAIFTRGETQAIVVATLGTGEDEQYVDSLTGMYKE 66
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + + R+ G + RA+ ++ + + + +
Sbjct: 67 NFMLHYNFPPFSVGETGRLGSPGRREIGHGKL----AWRAIHPMLPTAEQFPYTLRVVSE 122
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAI 164
+ +++G + A + G +AL D + + + +G A+
Sbjct: 123 ITESNGSSSMATVCGTSLALMDAGVPIAKPVAGIAMGLIKEGDRFAV 169
>gi|133918845|emb|CAL29627.1| polyribonucleotide nucleotidyltransferase [Sinorhizobium
americanum]
Length = 180
Score = 112 bits (280), Expect = 4e-23, Method: Composition-based stats.
Identities = 29/178 (16%), Positives = 63/178 (35%), Gaps = 8/178 (4%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +R I + GS + G+T + ATL +E+ +
Sbjct: 7 RIDGRDLVTVRPIVAEVGLLPRTHGSAIFTRGETQAIVVATLGTGEDEQYVDSLTGMYKE 66
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + + R+ G + RA+ ++ + + + +
Sbjct: 67 NFMLHYNFPPFSVGETGRMGSPGRREIGHGKL----AWRAIHPMLPTAEQFPYTLRVVSE 122
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIV 175
+ +++G + A + G +AL D + + + + A+ +L +
Sbjct: 123 ITESNGSSSMATVCGTSLALMDAGVPLAKPVAGIAMGLIKEDDRFAVLSDILGDEDHL 180
>gi|321469848|gb|EFX80827.1| hypothetical protein DAPPUDRAFT_243159 [Daphnia pulex]
Length = 743
Score = 112 bits (279), Expect = 5e-23, Method: Composition-based stats.
Identities = 46/248 (18%), Positives = 88/248 (35%), Gaps = 14/248 (5%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE--------EKVPMWIR 52
+R GR+ +R IS + K GS + + G T ++ T + + V + +
Sbjct: 327 IRCDGRKLTDIRNISCGVDLYKPLHGSAIFQRGQTQVVCTVAFDSPESALKSDPVSILMG 386
Query: 53 NTKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQI 112
K Y P +T + + G R + + LR VV I
Sbjct: 387 GLKAKNFFLHYEFPPYATNETGRVGSGGSA-GRRELGHGALAEKGLRPVVPSDYPF--TI 443
Query: 113 IIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY 172
+ +V++++G + A++ G +AL D + + + V + V + +
Sbjct: 444 RLTSEVLESNGSSSMASVCGGSLALMDAGVPILQPAAGVAVGLVSR--VNPETKQIDDYR 501
Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
+ DL ED D+D T G I +Q + + A D + ++
Sbjct: 502 ILTDLLGIEDYLGDMDFKLAGTKKG-ITALQADFKLPGVPLKIIMESVVQASDAKSHILD 560
Query: 233 LQKDVISN 240
+ I
Sbjct: 561 IMAQTIKQ 568
Score = 83.4 bits (204), Expect = 3e-14, Method: Composition-based stats.
Identities = 40/225 (17%), Positives = 73/225 (32%), Gaps = 25/225 (11%)
Query: 20 VSKYAEGSCLVKFGDTHLLTTATLEEKVPM---WIRNTKHGWITAEYGMLPRSTGNRVKR 76
+++A+GS + FGDT +L TA + K + A G +P + R
Sbjct: 33 YARFADGSAVASFGDTAVLVTAVSKAKSSPASFLPLTVDYRQKAAAAGRIPTNFLRR--- 89
Query: 77 EAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVA 136
R RMI R+LR + Q++ + + +I A A
Sbjct: 90 ---ELGTSEREILTSRMIDRSLRPLFPDGYFYETQVVCNLLSVDGVNDPEVLSINAASAA 146
Query: 137 LHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDS 196
G VAA+ G + +++ E + ++ T
Sbjct: 147 -------------LAISDIPWNGPVAAVRVGFIDNEVVINPTRRELAHSQLNLVVSSTFP 193
Query: 197 GHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
+V ++ SAE Q F + + K + + +
Sbjct: 194 NLVVMLEASAENVY--QQDFLKAIRTGVKECQTIAKAIEK-LRED 235
>gi|311253305|ref|XP_003125500.1| PREDICTED: exosome complex exonuclease RRP41-like isoform 2 [Sus
scrofa]
Length = 243
Score = 112 bits (279), Expect = 5e-23, Method: Composition-based stats.
Identities = 55/242 (22%), Positives = 91/242 (37%), Gaps = 21/242 (8%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R+ GR+ ++R+I V A+GS ++ G+T L + +
Sbjct: 13 RVDGRRARELRKIQARMGVFAQADGSAYIEQGNTKALAVVYGPHEASGRAPLPDRALVNC 72
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
+Y STG R +R + S E+ + +A + + QI I V+QA
Sbjct: 73 QYSSATFSTGERKRRPHGDRK----SCEMGLQLRQAFEAAILTQLHPRSQIDIYVQVLQA 128
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
DGG A + A +A+ D M D V A S G + G + DL + E
Sbjct: 129 DGGIYAACVNVATLAVLDAGIPMRDF-------------VCACSAGFVDGTALADLSHVE 175
Query: 182 DSTIDVDANFV-MTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
++ + SG I ++ A +DH +L A D+ + V+
Sbjct: 176 EAAGGPQLALALLPASGQIALLEMDAR---LHEDHLEQVLEAAAQAARDVHTVLDRVVRQ 232
Query: 241 EV 242
V
Sbjct: 233 HV 234
>gi|307174738|gb|EFN65093.1| Exosome complex exonuclease RRP41 [Camponotus floridanus]
Length = 274
Score = 112 bits (279), Expect = 5e-23, Method: Composition-based stats.
Identities = 49/250 (19%), Positives = 96/250 (38%), Gaps = 10/250 (4%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWI-RNTKHGWI 59
+R GR+ ++R+I L V A+GS ++ G+T +L + I RN+ ++
Sbjct: 13 LRSDGRRALELRQIRLRMGVFGQADGSAYIEHGNTKVLAAVYGPHQPKSNISRNSTKAFV 72
Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119
+Y M S + R +SQE + A+ +++ L QI I +V+
Sbjct: 73 NCQYSMAVFSFTS--GERKRRPRGDWKSQERSAQLRHAMEAIIHLELYPRSQIDIFVEVL 130
Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179
Q DG A++ + +AL D +++ + +S + K L +
Sbjct: 131 QVDGSDYCASVNASTLALIDAGIPIKNYAVGCTVSLINKLTTEEEEDKTLATGVLDANFV 190
Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAE-------RATFSQDHFFAMLNLAKDRIADLIK 232
E S + + ++ + VEV GS A+ A D+ +
Sbjct: 191 EECSPGVTLSVVALPETNNEVEVDGSGLIVVAHGAGQRLHLSRLEALKKRALQGCQDIKE 250
Query: 233 LQKDVISNEV 242
+ + + +
Sbjct: 251 ILDGGVRHHL 260
>gi|194860851|ref|XP_001969665.1| GG10219 [Drosophila erecta]
gi|190661532|gb|EDV58724.1| GG10219 [Drosophila erecta]
Length = 246
Score = 112 bits (279), Expect = 5e-23, Method: Composition-based stats.
Identities = 46/243 (18%), Positives = 89/243 (36%), Gaps = 23/243 (9%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+RL GR+ +++R I V + +GS ++ G+T +L + I
Sbjct: 13 LRLDGRRPHELRRIKCKLGVFEQPDGSAYMEQGNTKVLAAVYGPHQAKSK---HTESIIN 69
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
+Y ST R R +S E + + +AL + + QI I +V+Q
Sbjct: 70 CQYSQATFSTAERKY----RPRGDRKSLEFKMYLQQALSAAIKSELYPRSQIDIYVEVLQ 125
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADG A+ A +AL D + + VA + P+ D+ +
Sbjct: 126 ADGANYAVALNAATLALIDAGI------------CLNEFIVACTASLSKSNIPLTDISHF 173
Query: 181 EDSTIDVDANF-VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
E+ + + + I ++ S F DH ++ A ++ + + +
Sbjct: 174 EEVSGGPKLTVAALPTAEKIAFLEMS---ERFHIDHLETVIETAMAGCREIRDILEAAVK 230
Query: 240 NEV 242
+
Sbjct: 231 EHL 233
>gi|254172923|ref|ZP_04879597.1| exosome complex exonuclease RRP43 [Thermococcus sp. AM4]
gi|214033079|gb|EEB73907.1| exosome complex exonuclease RRP43 [Thermococcus sp. AM4]
Length = 273
Score = 111 bits (278), Expect = 6e-23, Method: Composition-based stats.
Identities = 48/255 (18%), Positives = 94/255 (36%), Gaps = 23/255 (9%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R+ GR + R+I + + AEGS V+ G T +L ++ P + G +T
Sbjct: 24 RIDGRSFEEYRDIEIKTGFIEKAEGSAWVRLGGTRVLVGIKVDVGEP-FPDLPDRGVMTT 82
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALG--------SRQII 113
++P ++ R+ E+ R+I R +R + R +
Sbjct: 83 NVELVPLASPTFEPGP-----PDERAIELARVIDRGIRESQAVELEKLVIVPGKLVRVVF 137
Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNK--------FQLSQVLKGHVAAIS 165
ID V+ DG A A AL + + + ++ ++
Sbjct: 138 IDVHVLDHDGNLFDATGLAAMAALLTTRVPKVEYNEETGEIVKLDEYEPLPVRRIPLPVT 197
Query: 166 CGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKD 225
+ IVD + E++ +D ++GHI VQ E +F + ++ A
Sbjct: 198 FAKIGSSIIVDPNLDEETVMDSRITITTDETGHISAVQK-GEGGSFKLEEVMYAIDTALK 256
Query: 226 RIADLIKLQKDVISN 240
+ +L K+ + + +
Sbjct: 257 KADELRKILLEAVGS 271
>gi|133918785|emb|CAL29597.1| polyribonucleotide nucleotidyltransferase [Agrobacterium rubi]
Length = 180
Score = 111 bits (278), Expect = 6e-23, Method: Composition-based stats.
Identities = 32/167 (19%), Positives = 63/167 (37%), Gaps = 8/167 (4%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR + +R I + GS L G+T + ATL +E+ +
Sbjct: 7 RIDGRDLSTVRPIVSEVGMLPRTHGSALFTRGETQAIVVATLGTGEDEQYVDSLTGMYKE 66
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + + R+ G + RA+R ++ + + +
Sbjct: 67 RFLLHYNFPPYSVGETGRMGSPGRREIGHGKL----AWRAIRPMLPSVEQFPYTLRVVSE 122
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAI 164
+ +++G + A + G +AL D + + +L+G A+
Sbjct: 123 ITESNGSSSMATVCGTSLALMDAGVPLAKPVAGIAMGLILEGERFAV 169
>gi|302829841|ref|XP_002946487.1| hypothetical protein VOLCADRAFT_108889 [Volvox carteri f.
nagariensis]
gi|300268233|gb|EFJ52414.1| hypothetical protein VOLCADRAFT_108889 [Volvox carteri f.
nagariensis]
Length = 245
Score = 111 bits (278), Expect = 6e-23, Method: Composition-based stats.
Identities = 65/243 (26%), Positives = 99/243 (40%), Gaps = 22/243 (9%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKV-PMWIRNTKHGWI 59
+RL GR+ ++R I+ V A+GS + + G+T +L V +
Sbjct: 9 LRLDGRRPRELRRINCQLDVLSSADGSAIFEMGNTKVLAAVFGPHAVTKRADLREDAAIV 68
Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119
EY M STG R +R R +I L + + QI + V+
Sbjct: 69 VCEYSMAAFSTGERRRRGKGDRRSTEL----SMVIRNTLEQAILRELMPRSQIDVYVQVL 124
Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179
QADGGTR AAI A +AL + D VA+ + G L G P++DL++
Sbjct: 125 QADGGTRCAAINAAVLALAAAGVPLRDL-------------VASCAAGYLDGTPLLDLNF 171
Query: 180 GEDSTIDVDANFVM-TDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
EDS D + G +V VQ D F A+L+LA+D + + + +
Sbjct: 172 TEDSGGGPDLAVALAPREGLLVLVQMD---NRLPVDTFQAVLDLARDGCRTISGVMRAAL 228
Query: 239 SNE 241
Sbjct: 229 LEH 231
>gi|195435372|ref|XP_002065667.1| GK15569 [Drosophila willistoni]
gi|194161752|gb|EDW76653.1| GK15569 [Drosophila willistoni]
Length = 251
Score = 111 bits (278), Expect = 6e-23, Method: Composition-based stats.
Identities = 47/245 (19%), Positives = 91/245 (37%), Gaps = 22/245 (8%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIR--NTKHGW 58
+RL GR+ +++R I V + +GS ++ G+T +L + + +
Sbjct: 13 LRLDGRRPHELRHIKCKLGVFEQPDGSAYMEQGNTKVLAAVYGPHQAKGKNKSSESNDVI 72
Query: 59 ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDV 118
I +Y ST R R +SQE + + +AL + + QI + +V
Sbjct: 73 INCQYSQATFSTAERK----NRPRGDRKSQEFKMYLQQALSAAIKSELYPRSQIDVYVEV 128
Query: 119 IQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLD 178
+QADG A+ A +AL D + + VA + P+ D+
Sbjct: 129 LQADGANYAVALNAATLALIDAGI------------CLNEFIVACTASLSKSNIPLTDIS 176
Query: 179 YGEDSTIDVDANF-VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
E+ + + S I ++ S F DH ++ A ++ + +
Sbjct: 177 QVEEISGGPKLTVAALPTSEKIAFLEMS---ERFHIDHLETVIETAMAGCREIRDILEAA 233
Query: 238 ISNEV 242
+ +
Sbjct: 234 VKEHL 238
>gi|312137049|ref|YP_004004386.1| ribosomal RNA-processing protein rrp42 [Methanothermus fervidus DSM
2088]
gi|311224768|gb|ADP77624.1| ribosomal RNA-processing protein RRP42 [Methanothermus fervidus DSM
2088]
Length = 270
Score = 111 bits (278), Expect = 7e-23, Method: Composition-based stats.
Identities = 50/248 (20%), Positives = 92/248 (37%), Gaps = 16/248 (6%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
RL GR + R+I + V AEGS VK GDT +L P + N G I
Sbjct: 26 RLDGRSFYEFRDIKIKTGVISKAEGSARVKLGDTQVLVGVKPTIGEP-FPDNPNLGIIIT 84
Query: 62 EYGMLPRSTGNRVKREAVSG-----RQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
+LP ++ R R M+ L + + + ID
Sbjct: 85 NSELLPMASPTFEPGPPDERSIELARVVDRCIRESNMLD--LEKLCIIEGEKVWILFIDL 142
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLS-------QVLKGHVAAISCGML 169
++ DG A++ GA AL D + + +K VA + +
Sbjct: 143 HILDYDGNLFDASVLGAVAALMDTKLPKVSIEDDEVVIDDSSVELLDIKDKVAMCTFAKI 202
Query: 170 CGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIAD 229
++D E+ + + M G I +Q + + S++ +N+A+++ +
Sbjct: 203 GDELVLDPSLEEEEILTARLSIGMNSEGKICAMQKGGK-GSLSREDISKAINIAEEKTPE 261
Query: 230 LIKLQKDV 237
L++ +++
Sbjct: 262 LLQHLENI 269
>gi|133918821|emb|CAL29615.1| polyribonucleotide nucleotidyltransferase [Rhizobium huautlense]
Length = 180
Score = 111 bits (278), Expect = 7e-23, Method: Composition-based stats.
Identities = 32/167 (19%), Positives = 63/167 (37%), Gaps = 8/167 (4%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +R I + GS L G+T + ATL +E+ +
Sbjct: 7 RIDGRDLETVRAIVSEVGILPRTHGSALFTRGETQAIVVATLGTGEDEQYVDSLTGMYKE 66
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + + R+ G + RA+R ++ + + + +
Sbjct: 67 RFLLHYNFPPYSVGETGRMGSPGRREIGHGKL----AWRAIRPMLPSAEQFPYTLRVVSE 122
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAI 164
+ +++G + A + G +AL D + + +L+G A+
Sbjct: 123 ITESNGSSSMATVCGTSLALMDAGVPLAKPVAGIAMGLILEGDRFAV 169
>gi|195472532|ref|XP_002088554.1| GE11809 [Drosophila yakuba]
gi|194174655|gb|EDW88266.1| GE11809 [Drosophila yakuba]
Length = 246
Score = 111 bits (278), Expect = 7e-23, Method: Composition-based stats.
Identities = 46/243 (18%), Positives = 89/243 (36%), Gaps = 23/243 (9%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+RL GR+ +++R I V + +GS ++ G+T +L + I
Sbjct: 13 LRLDGRRPHELRRIKCKLGVFEQPDGSAYMEQGNTKVLAAVYGPHQAKGK---QTESIIN 69
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
+Y ST R R +S E + + +AL + + QI I +V+Q
Sbjct: 70 CQYSQATFSTAERK----NRPRGDRKSLEFKMYLQQALSAAIKSELYPRSQIDIYVEVLQ 125
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADG A+ A +AL D + + VA + P+ D+ +
Sbjct: 126 ADGANYAVALNAATLALIDAGI------------CLNEFIVACTASLSKSNIPLTDISHF 173
Query: 181 EDSTIDVDANF-VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
E+ + + + I ++ S F DH ++ A ++ + + +
Sbjct: 174 EEVSGGPKLTVAALPTAEKIAFLEMS---ERFHIDHLETVIETAMAGCREIRDILEAAVK 230
Query: 240 NEV 242
+
Sbjct: 231 EHL 233
>gi|116754658|ref|YP_843776.1| exosome complex RNA-binding protein Rrp42 [Methanosaeta thermophila
PT]
gi|116666109|gb|ABK15136.1| ribosomal RNA-processing protein RRP42 [Methanosaeta thermophila
PT]
Length = 257
Score = 111 bits (278), Expect = 7e-23, Method: Composition-based stats.
Identities = 48/240 (20%), Positives = 85/240 (35%), Gaps = 15/240 (6%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R GR Q R I + R + K AEGS LVK G T ++ ++ P + G I
Sbjct: 22 RADGRSFTQYRPIEIERNIIKKAEGSALVKLGKTQVMVGIKIQPGEP-FPDAPNRGVIVT 80
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRA--------LRSVVDLSALGSRQII 113
++P ++ G E+ R++ R L ++ + I
Sbjct: 81 NAELVPLASPIFEP-----GPPNEYGIELARVVDRGVRESGSVDLDALCIVPGEKVWIIF 135
Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP 173
ID ++ G A+ GA AL ++ A +
Sbjct: 136 IDIHILDDCGNIMDASSLGAIAALLGATVPASRFGLGEDFQLPVRDIPIATTAVEFGDVV 195
Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
+ D D E++ D + G I +Q S S+D + ++++A D ++ +
Sbjct: 196 LFDPDVDEEAIADAKLTVITKADGTICGMQKSG-PGMLSEDQVYRIVDIACDNAREIREK 254
>gi|27262520|gb|AAN87541.1| Polyribonucleotide nucleotidyltransferase [Heliobacillus mobilis]
Length = 445
Score = 111 bits (277), Expect = 8e-23, Method: Composition-based stats.
Identities = 40/236 (16%), Positives = 82/236 (34%), Gaps = 28/236 (11%)
Query: 10 QMR-EISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT----KHGWITAEY 63
R +++ V+K A GS + ++GDT +L+TAT ++ I +
Sbjct: 29 DCRTNLTVETGRVAKQAGGSVMARYGDTVVLSTATASKEPRPGIDFFPLTVDYEERLYAV 88
Query: 64 GMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADG 123
G +P R GR ++ R+I R +R + Q++ + D
Sbjct: 89 GKIPGGFIKR------EGRPTEKAILSSRLIDRPIRPLFPKGFRNDVQVVSTVLSVDQDC 142
Query: 124 GTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDS 183
+ GA AL +G + + G + G I++ E
Sbjct: 143 PPDIVGMIGASCALC-------------LSDVPFEGPIGGVVVGRVDGKLIINPRMEEAE 189
Query: 184 TIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
D+ T ++ V+ A ++ + I +++ Q++++
Sbjct: 190 KSDMHLVVAGTKD-AVMMVEAGANE--IPEEDMIEAIMFGHQEIQRIVQFQEEMMK 242
Score = 93.0 bits (229), Expect = 3e-17, Method: Composition-based stats.
Identities = 22/117 (18%), Positives = 37/117 (31%), Gaps = 8/117 (6%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R GR+ +++R I++ + GS L G T +L TL + ++ + +
Sbjct: 332 RPDGRKVDEIRPITVEVGILPRTHGSALFTRGQTQVLNVCTLGTISDLQILDGLGVEESK 391
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIII 114
Y S G R+ G RAL V+
Sbjct: 392 RYMHHYNFPSYSVGETRPMRGPGRREIGHGAL----AERALLPVIPSEDAVPVTTNP 444
>gi|304314829|ref|YP_003849976.1| exosome RNA binding protein [Methanothermobacter marburgensis str.
Marburg]
gi|302588288|gb|ADL58663.1| predicted exosome RNA binding protein [Methanothermobacter
marburgensis str. Marburg]
Length = 267
Score = 111 bits (277), Expect = 8e-23, Method: Composition-based stats.
Identities = 48/250 (19%), Positives = 93/250 (37%), Gaps = 16/250 (6%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R+ GR ++ R+IS+ V AEGS VK G+T ++ + P + + G I
Sbjct: 21 RIDGRSLHEFRDISIETGVISKAEGSSRVKLGNTQIIVGVKPQIGEP-FPDTPEMGVILT 79
Query: 62 EYGMLPRSTGNRVKREAVSG-----RQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
+LP ++ R R +MI L + + + +D
Sbjct: 80 NSELLPMASPTFEPGPPDERSVELSRVVDRCVRESQMID--LEKLCIIEGSKVWMLFLDL 137
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQL-------SQVLKGHVAAISCGML 169
+I DG AA+ AL D + + L + + +
Sbjct: 138 HIIDYDGNLFDAAVLATVAALLDTRIPAAEVEDGEVLVDRENMQPLPINRKALMCTFAKI 197
Query: 170 CGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIAD 229
I+D E+ + + +T+ G I +Q E A ++D +++A++++
Sbjct: 198 GDEIILDPCLEEEDILTARLSIGVTEDGSICAMQKGGEGA-LTRDDVLRAVSIAREKVPQ 256
Query: 230 LIKLQKDVIS 239
LI+ ++
Sbjct: 257 LIEYLDKSMA 266
>gi|330835837|ref|YP_004410565.1| exosome complex RNA-binding protein Rrp42 [Metallosphaera cuprina
Ar-4]
gi|329567976|gb|AEB96081.1| exosome complex RNA-binding protein Rrp42 [Metallosphaera cuprina
Ar-4]
Length = 283
Score = 111 bits (277), Expect = 8e-23, Method: Composition-based stats.
Identities = 59/251 (23%), Positives = 97/251 (38%), Gaps = 27/251 (10%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R GR+ N R +S+T +K A+GS LVK GDT +L +EE P G +
Sbjct: 28 RNDGRKFNDYRPLSITLGYAKKADGSALVKLGDTTVLAGVKIEEDEPYS-DTPNQGNLVV 86
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALG--------SRQII 113
+LP + G + E+ R++ R+LR + +
Sbjct: 87 NAELLPLAYETFEP-----GPPDENAIELSRVVDRSLRDSKAVDLSALVIEPGKRVWTVW 141
Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQ--------LSQVLKGHVAAIS 165
+D V+ G A A AL+D N ++ VA ++
Sbjct: 142 VDISVLDYGGNILDACTLSAVAALYDTKLPRIVNDNGTINIVKEDKTTPFPIRYPVATVT 201
Query: 166 CGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKD 225
L + +VD D E+ +D +F GHIV +Q S E +FSQ + +A++
Sbjct: 202 IAKLGKFLVVDPDLEEEGIMDAKISFSYIPDGHIVGIQKSGE-GSFSQQE----IEIAEN 256
Query: 226 RIADLIKLQKD 236
+ + +
Sbjct: 257 TSRTVSQKMLE 267
>gi|133919184|emb|CAL29640.1| polyribonucleotide nucleotidyltransferase [Agrobacterium vitis]
Length = 180
Score = 111 bits (277), Expect = 8e-23, Method: Composition-based stats.
Identities = 32/167 (19%), Positives = 62/167 (37%), Gaps = 8/167 (4%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +R I + GS L G+T + ATL +E+ +
Sbjct: 7 RIDGRDLETVRAIVSEVGILPRTHGSALFTRGETQAIVVATLGTGEDEQYVDSLTGMYKE 66
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + + R+ G + RA+R ++ + + +
Sbjct: 67 RFLLHYNFPPYSVGETGRMGSPGRREIGHGKL----AWRAIRPMLPSPEQFPYTLRVVSE 122
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAI 164
+ +++G + A + G +AL D + + +L+G A+
Sbjct: 123 ITESNGSSSMATVCGTSLALMDAGVPLAKPVAGIAMGLILEGERFAV 169
>gi|148228965|ref|NP_001088679.1| exosome component 4 [Xenopus laevis]
gi|56270437|gb|AAH87307.1| LOC495942 protein [Xenopus laevis]
Length = 249
Score = 111 bits (277), Expect = 9e-23, Method: Composition-based stats.
Identities = 49/243 (20%), Positives = 88/243 (36%), Gaps = 23/243 (9%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVP--MWIRNTKHGWI 59
R+ GR+ ++R+I V A+GS ++ G+T L ++ I
Sbjct: 13 RVDGRKAGELRKIRARMGVFAQADGSAYIEQGNTKALAVVYGPHEIRGSRSKMLHDRCVI 72
Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119
+Y M STG R +R + + + + + + QI I ++
Sbjct: 73 NCQYSMATFSTGERKRRPHGDRKSSE----MTLHLKQTFEAAILTQLYPRSQIDIYVQIL 128
Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179
QADGG + A +A+ D M D V A S G + P+ DL Y
Sbjct: 129 QADGGNYCTCVNAATLAVIDAGIPMRDY-------------VCACSAGFIEDTPLADLSY 175
Query: 180 GEDSTIDVDANFV-MTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
E++T + S I ++ ++ +DH ++ D+ + V+
Sbjct: 176 VEEATGGPQLALALLPKSDQIALLEMNSR---LHEDHLERVMEAVSKACKDVYTVLDQVV 232
Query: 239 SNE 241
Sbjct: 233 REH 235
>gi|46203340|ref|ZP_00051652.2| COG1185: Polyribonucleotide nucleotidyltransferase (polynucleotide
phosphorylase) [Magnetospirillum magnetotacticum MS-1]
Length = 386
Score = 111 bits (277), Expect = 1e-22, Method: Composition-based stats.
Identities = 37/221 (16%), Positives = 79/221 (35%), Gaps = 18/221 (8%)
Query: 22 KYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGMLPRSTGNRVKRE 77
A GS L+ +T L ATL +E++ + Y P S G +
Sbjct: 2 PRAHGSALLSLVETQALLFATLGTGQDEQISDHLAGEYREHFMLHYNCPPYSVGEAGRMG 61
Query: 78 AVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVAL 137
+ R+ G + RA+R + + + ++ +++G + A + G+ +A+
Sbjct: 62 SPGRREIGHGKL----AWRAMRPTLPTKESFPYTMRVVSEITESNGSSSMATVCGSSLAM 117
Query: 138 HDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSG 197
D + + + +G+ A+ + ED D+D T G
Sbjct: 118 MDAGVPLPKPVAGIAMGLIKEGNDFAVLSD---------ILGDEDHLGDMDFKVAGTVDG 168
Query: 198 HIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
+ +Q + + +++ L AKD ++ +
Sbjct: 169 -VTALQMDIKITSITEEIMKIALGQAKDGRIHILGEMNKGL 208
>gi|17946442|gb|AAL49254.1| RE67757p [Drosophila melanogaster]
Length = 246
Score = 111 bits (276), Expect = 1e-22, Method: Composition-based stats.
Identities = 46/243 (18%), Positives = 88/243 (36%), Gaps = 23/243 (9%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+RL GR+ +++R I V + +GS ++ G+T +L + N I
Sbjct: 13 LRLDGRRPHELRRIKCKLGVFEQPDGSAYMEQGNTKVLAAVYGPHQAKG---NQTESVIN 69
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
+Y ST R R +S E + + +AL + + QI I +V+Q
Sbjct: 70 CQYSQATFSTAERK----NRPRGDRKSLEFKLYLQQALSAAIKSELYPRSQIDIYVEVLQ 125
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
DG A+ A +AL D + + VA + P+ D+
Sbjct: 126 DDGANYAVALNAATLALIDAGI------------CLNEFIVACTASLSKSNIPLTDISQF 173
Query: 181 EDSTIDVDANF-VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
E+ + + + I ++ S F DH ++ A ++ + + +
Sbjct: 174 EEVSGGPKLTVAALPTAEKIAFLEMS---ERFHIDHLGTVIETAMAGCREIRDILEAAVK 230
Query: 240 NEV 242
+
Sbjct: 231 EHL 233
>gi|126322962|ref|XP_001364428.1| PREDICTED: similar to Chain G, Structure Of The Human Rna Exosome
Composed Of Rrp41, Rrp45, Rrp46, Rrp43, Mtr3, Rrp42,
Csl4, Rrp4, And Rrp40 [Monodelphis domestica]
Length = 245
Score = 111 bits (276), Expect = 1e-22, Method: Composition-based stats.
Identities = 54/244 (22%), Positives = 93/244 (38%), Gaps = 23/244 (9%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVP--MWIRNTKHGWI 59
R+ GR+ ++R+I V A+GS ++ G+T L ++ +
Sbjct: 13 RVDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVVYGPHEMRGSRSRALPDRALV 72
Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119
+Y M STG R +R + + E+ + + + + QI I V+
Sbjct: 73 NCQYSMATFSTGERKRRPHGDRK----ACEMGLQLRQTFEAAILTQLYPRSQIDIYVQVL 128
Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179
QADGG A + A +A+ D M D V A S G + G + DL +
Sbjct: 129 QADGGNYAACVNAATLAVLDAGIPMRDF-------------VCACSAGFVDGTALADLSH 175
Query: 180 GEDSTIDVDANFV-MTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
E++ + SG + ++ A +DH +L +A D+ L V+
Sbjct: 176 VEEAAGGPQLALALLPASGQLALLEMDAR---LHEDHLQQVLEVASQAARDVHALLDRVV 232
Query: 239 SNEV 242
V
Sbjct: 233 RQHV 236
>gi|133919190|emb|CAL29643.1| polyribonucleotide nucleotidyltransferase [Bradyrhizobium
japonicum]
Length = 180
Score = 111 bits (276), Expect = 1e-22, Method: Composition-based stats.
Identities = 35/167 (20%), Positives = 63/167 (37%), Gaps = 8/167 (4%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +R I V A GS L G+T L TL +E+ + T
Sbjct: 7 RIDGRDSKTVRNIIAEVGVLPRAHGSALFTRGETQALVVTTLGTGEDEQYIDALSGTYKE 66
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + R+ G + RA+ V+ + +
Sbjct: 67 TFLLHYNFPPYSVGETGRLGGTKRREIGHGKL----AWRAIHPVLPPHHEFPYTTRVVSE 122
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAI 164
+ +++G + A++ GA +AL D ++ + + +L+ A+
Sbjct: 123 ITESNGSSSMASVCGASLALMDAGVPLKRPTAGIAMGLILEDKRFAV 169
>gi|20093818|ref|NP_613665.1| exosome complex RNA-binding protein Rrp42 [Methanopyrus kandleri
AV19]
gi|29336820|sp|Q8TYC2|ECX2_METKA RecName: Full=Probable exosome complex exonuclease 2
gi|19886741|gb|AAM01595.1| Predicted exosome subunit, predicted exoribonuclease related to
RNase PH [Methanopyrus kandleri AV19]
Length = 267
Score = 111 bits (276), Expect = 1e-22, Method: Composition-based stats.
Identities = 47/249 (18%), Positives = 87/249 (34%), Gaps = 16/249 (6%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R+ GR + R I + V A GS LV+ G+T L+ LE P + + G +
Sbjct: 23 RIDGRDFEEFRPIEVRAGVISKANGSALVRLGNTQLVVGVKLEVGRP-YPDSPNEGALAV 81
Query: 62 EYGMLPRSTGNRVKREAVSG-----RQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
++P + + R R MI L + +D
Sbjct: 82 NAELVPLADPSFEPGPPDENAIELSRVVDRGIRESEMID--LEELCIEEGEHCWVTFVDI 139
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHM-------EDCSNKFQLSQVLKGHVAAISCGML 169
V+ DG A++ G+ AL + + + +++ +
Sbjct: 140 HVLDHDGNLFDASMIGSVSALSITEVPKAEVVDDEVEVMEEDTEPLAINDFPISVTIAKV 199
Query: 170 CGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIAD 229
Y +VD E+ +D +T+SG + VQ E F + ++LA + +
Sbjct: 200 GEYLLVDPCLEEEVIMDTRLTVTVTESGEVCAVQK-GELGDFPEHLLEDAIDLATKKAEE 258
Query: 230 LIKLQKDVI 238
+ + K +
Sbjct: 259 VRRTVKAQL 267
>gi|221101900|ref|XP_002160475.1| PREDICTED: similar to putative exosome complex exonuclease RRP41
[Hydra magnipapillata]
Length = 244
Score = 110 bits (275), Expect = 2e-22, Method: Composition-based stats.
Identities = 46/242 (19%), Positives = 92/242 (38%), Gaps = 20/242 (8%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRN-TKHGWI 59
+R GR+ +++R+I+ + + A+GS ++ G+T ++ + +V + I
Sbjct: 12 LRFDGRKCHELRKITAKKGIFSQADGSAYIEQGNTKVIASVYGPHEVSNRSKTLHDSTLI 71
Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119
++ M S R R + I ++ + + + QI I VI
Sbjct: 72 NCQFSMATFSMSERKNRPKGDRKSTE----ISMLLEKTFATAIMTELYPRSQIDIYVQVI 127
Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179
Q+DGG A I A +AL D M+D S V + ++ I+
Sbjct: 128 QSDGGVIAACINVATLALIDAGVPMKDFVCACTSSYVQEKNLTDINH------------L 175
Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
E S ++ + +V Q S+ D+ +L + K D+ + + +
Sbjct: 176 EESSGSCQLTLAMLPRTAKVVAFQVSSR---LHLDNLEELLKITKQGCLDIYNVLQQAVE 232
Query: 240 NE 241
+
Sbjct: 233 AD 234
>gi|198442889|ref|NP_001128332.1| exosome complex exonuclease RRP41 [Rattus norvegicus]
Length = 245
Score = 110 bits (275), Expect = 2e-22, Method: Composition-based stats.
Identities = 55/244 (22%), Positives = 92/244 (37%), Gaps = 23/244 (9%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVP--MWIRNTKHGWI 59
R+ GR+ ++R+I V A+GS ++ G+T L ++ +
Sbjct: 13 RIDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVVYGPHEIRGSRSRALPDRALV 72
Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119
+Y STG R +R + S E+ + + + + QI I V+
Sbjct: 73 NCQYSSATFSTGERKRRPHGDRK----SCEMGLQLRQTFEAAILTQLHPRSQIDIYVQVL 128
Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179
QADGGT A + A +A+ D M D V A S G + G + DL +
Sbjct: 129 QADGGTYAACVNAATLAVMDAGIPMRDF-------------VCACSAGFVDGTALADLSH 175
Query: 180 GEDSTIDVDANFV-MTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
E++ + SG I ++ + +DH +L A D+ L V+
Sbjct: 176 VEEAAGGPQLALALLPASGQIALLEMDSR---LHEDHLEQVLEAAAQAARDVHTLLDRVV 232
Query: 239 SNEV 242
V
Sbjct: 233 RQHV 236
>gi|124027457|ref|YP_001012777.1| exosome complex RNA-binding protein Rrp42 [Hyperthermus butylicus
DSM 5456]
gi|123978151|gb|ABM80432.1| RNase PH-related exoribonuclease [Hyperthermus butylicus DSM 5456]
Length = 328
Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats.
Identities = 45/258 (17%), Positives = 86/258 (33%), Gaps = 27/258 (10%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+RL GR+ ++ R + +T AEGS LVK G T +L + V + +
Sbjct: 27 VRLDGRKLDETRPVEITPGYIDRAEGSALVKLGQTVVLAGVKTDI-VAPFPDTPNEAVLV 85
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLS------ALGSRQIII 114
+P ++ G + E+ R+I R+LR + ++ G +
Sbjct: 86 VHAEFVPLASPTFEP-----GPPDENAIELARVIDRSLREIKAVALDKLVLEPGKHVWRL 140
Query: 115 DCDVIQADGGTRTAA----------ITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAI 164
D+ + +T A +KF + V +
Sbjct: 141 YVDLYILNHDGNLFDASMLAAMAALMTTRLPAAVKTEDGYTVDRSKFTGLVPVNHKVVTV 200
Query: 165 SCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAK 224
+ L IVD Y E+ D ++D G I +Q + + + +A
Sbjct: 201 TIAKLSNRLIVDPTYEEEQVADTRLVVAVSDDGRIAGIQKTGMGD-LTYKEVLTAVAIAL 259
Query: 225 DRIADLIKLQKDVISNEV 242
++ + + +V
Sbjct: 260 NKAQ----VYLKALEEKV 273
>gi|229582055|ref|YP_002840454.1| exosome complex RNA-binding protein Rrp42 [Sulfolobus islandicus
Y.N.15.51]
gi|259645406|sp|C3NHC2|ECX2_SULIN RecName: Full=Probable exosome complex exonuclease 2
gi|228012771|gb|ACP48532.1| 3' exoribonuclease [Sulfolobus islandicus Y.N.15.51]
Length = 275
Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats.
Identities = 58/254 (22%), Positives = 94/254 (37%), Gaps = 23/254 (9%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R GR+ R +S+T +K A+GS LVK G T +L LE P + G +
Sbjct: 28 RQDGRKLTDYRPLSITLNYAKKADGSALVKLGTTMVLAGTKLEIDKP-YEDTPNQGNLIV 86
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALG--------SRQII 113
+LP + G + E+ R++ R+LR L +
Sbjct: 87 NVELLPLAYETFEP-----GPPDENAIELARVVDRSLRDSKALDLTKLVIEPGKSVWTVW 141
Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDC--------SNKFQLSQVLKGHVAAIS 165
+D V+ G A + AL++ + + N+ L V +S
Sbjct: 142 LDVYVLDYGGNVLDACTLASVAALYNTKVYKVEQDSNGFRVNKNEVVGKLPLNHPVVTVS 201
Query: 166 CGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKD 225
+ Y IVD D E+S +D +F T IV +Q S + + S N A+
Sbjct: 202 IAKVDKYLIVDPDLDEESIMDTKVSFSYTPDLKIVGIQKSGK-GSMSLQDIDQAENTARL 260
Query: 226 RIADLIKLQKDVIS 239
L++ K +
Sbjct: 261 VAVKLLEELKKQLG 274
>gi|227827678|ref|YP_002829458.1| exosome complex RNA-binding protein Rrp42 [Sulfolobus islandicus
M.14.25]
gi|229584882|ref|YP_002843384.1| exosome complex RNA-binding protein Rrp42 [Sulfolobus islandicus
M.16.27]
gi|259645402|sp|C3N5R4|ECX2_SULIA RecName: Full=Probable exosome complex exonuclease 2
gi|259645405|sp|C3MVG5|ECX2_SULIM RecName: Full=Probable exosome complex exonuclease 2
gi|227459474|gb|ACP38160.1| 3' exoribonuclease [Sulfolobus islandicus M.14.25]
gi|228019932|gb|ACP55339.1| 3' exoribonuclease [Sulfolobus islandicus M.16.27]
Length = 275
Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats.
Identities = 59/254 (23%), Positives = 94/254 (37%), Gaps = 23/254 (9%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R GR+ R +S+T +K A+GS LVK G T +L LE P + G +
Sbjct: 28 RQDGRKLTDYRPLSITLDYAKKADGSALVKLGTTMVLAGTKLEIDKP-YEDTPNQGNLIV 86
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALG--------SRQII 113
+LP + G + E+ R++ R+LR L +
Sbjct: 87 NVELLPLAYETFEP-----GPPDENAIELARVVDRSLRDSKALDLTKLVIEPGKSVWTVW 141
Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDC--------SNKFQLSQVLKGHVAAIS 165
+D V+ G A + ALH+ + + N+ L V +S
Sbjct: 142 LDVYVLDYGGNVLDACTLASVAALHNTKVYKVEQDSNGFRVNKNEVVGKLPLNHPVVTVS 201
Query: 166 CGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKD 225
+ Y IVD D E+S +D +F T IV +Q S + + S N A+
Sbjct: 202 IAKVDKYLIVDPDLDEESIMDTKVSFSYTPDLKIVGIQKSGK-GSMSLQDIDQAENTARL 260
Query: 226 RIADLIKLQKDVIS 239
L++ K +
Sbjct: 261 VAVKLLEELKKQLG 274
>gi|159474468|ref|XP_001695347.1| 3'-5' exoribonuclease PH component of the exosome [Chlamydomonas
reinhardtii]
gi|158275830|gb|EDP01605.1| 3'-5' exoribonuclease PH component of the exosome [Chlamydomonas
reinhardtii]
Length = 245
Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats.
Identities = 64/243 (26%), Positives = 96/243 (39%), Gaps = 22/243 (9%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW-I 59
+RL GR+ ++R I+ V A+GS + + G+T +L V + G +
Sbjct: 9 LRLDGRRPRELRRINCQLDVLSNADGSAIFEMGNTKVLAAVFGPHAVTRRSELREEGALV 68
Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119
EY M STG R +R R +I L V L QI + V+
Sbjct: 69 VCEYSMAAFSTGERRRRGKGDRRSTEL----SMVIRNTLEQAVITELLPRSQIDVYVQVL 124
Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179
QADGGTR AAI A +AL + D VA + G L G ++DL+Y
Sbjct: 125 QADGGTRCAAINAAVLALAAAGVPLRDL-------------VAGCAAGYLDGTALLDLNY 171
Query: 180 GEDSTIDVDANFVM-TDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
EDS D + + VQ D F A++ LA++ + + + +
Sbjct: 172 TEDSGGGPDLCVALAPRLDSLYLVQMD---NRLPVDTFQAVMELAREGCRTISGVMRAAL 228
Query: 239 SNE 241
Sbjct: 229 LEH 231
>gi|52548824|gb|AAU82673.1| 3'-5' exoribonuclease [uncultured archaeon GZfos19A5]
Length = 257
Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats.
Identities = 48/237 (20%), Positives = 84/237 (35%), Gaps = 9/237 (3%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R GR + R+IS+ R V K AEGS VK GDT +L +E P + G I
Sbjct: 23 REDGRGFREYRDISVERDVIKRAEGSARVKIGDTEVLVGVKVELGTP-FPDTPDKGVIIT 81
Query: 62 EYGMLPRSTGNRVKREAVSG-----RQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
++P ++ R R I L + + ID
Sbjct: 82 NAELVPLASPKFESGPPNENSIQLARVVDRGIRGSETID--LDKLCIEEGEKVWMVFIDI 139
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
V+ +G AA GA +L + E + + ++ A++ + G +VD
Sbjct: 140 HVLDDNGNLVDAAALGAITSLLNLRIPNERYGLTGENTLPMRDTPVAVTTVEIEGNILVD 199
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
+ E + + G + +Q S + M+ + ++ ++ K
Sbjct: 200 PSFDEGNAAASSVTVISNADGALSGMQKSGSGG-LKEAQIAEMVEIGIEKAGEIRKK 255
>gi|323474736|gb|ADX85342.1| 3' exoribonuclease [Sulfolobus islandicus REY15A]
gi|323477464|gb|ADX82702.1| 3' exoribonuclease [Sulfolobus islandicus HVE10/4]
Length = 275
Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats.
Identities = 58/254 (22%), Positives = 94/254 (37%), Gaps = 23/254 (9%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R GR+ R +S+T +K A+GS LVK G T +L LE P + G +
Sbjct: 28 RQDGRKLTDYRPLSITLDYAKKADGSALVKLGTTMVLAGTKLEIDKP-YEDTPNQGNLIV 86
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALG--------SRQII 113
+LP + G + E+ R++ R+LR L +
Sbjct: 87 NVELLPLAYETFEP-----GPPDENAIELARVVDRSLRDSKALDLTKLVIEPGKSVWTVW 141
Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDC--------SNKFQLSQVLKGHVAAIS 165
+D V+ G A + AL++ + + N+ L V +S
Sbjct: 142 LDVYVLDYGGNVLDACTLASVAALYNTKVYKVEQDSNGFRVNKNEVVGKLPLNHPVVTVS 201
Query: 166 CGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKD 225
+ Y IVD D E+S +D +F T IV +Q S + + S N A+
Sbjct: 202 IAKIDKYLIVDPDLDEESIMDTKVSFSYTPDLKIVGIQKSGK-GSMSLQDIDQAENTARL 260
Query: 226 RIADLIKLQKDVIS 239
L++ K +
Sbjct: 261 VAVKLLEELKKQLG 274
>gi|51473808|ref|YP_067565.1| ribonuclease PH [Rickettsia typhi str. Wilmington]
gi|51460120|gb|AAU04083.1| Phosphate-dependent exonuclease [Rickettsia typhi str. Wilmington]
Length = 168
Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats.
Identities = 86/164 (52%), Positives = 115/164 (70%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR SGR+ NQ+R ISL +AEGSCL+K G+TH++ +AT E VP ++R GWIT
Sbjct: 1 MRQSGRKSNQLRPISLELSPLIHAEGSCLIKIGNTHVMCSATCETTVPPFLRGQNRGWIT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGM+P ST NR+KRE G+QGGR+QEIQR+IGR +R V++L LG RQIIIDCDVI
Sbjct: 61 AEYGMIPGSTSNRIKREVALGKQGGRTQEIQRLIGRVMRCVINLQKLGERQIIIDCDVIN 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAI 164
ADGGTRT+AITG+++ALH ++ + + + + +
Sbjct: 121 ADGGTRTSAITGSYIALHLAIRLLMKKRILKVNTLISQIAAISC 164
>gi|15678709|ref|NP_275825.1| exosome complex RNA-binding protein Rrp42 [Methanothermobacter
thermautotrophicus str. Delta H]
gi|29336572|sp|O26778|ECX2_METTH RecName: Full=Probable exosome complex exonuclease 2
gi|295321489|pdb|2WNR|A Chain A, The Structure Of Methanothermobacter Thermautotrophicus
Exosome Core Assembly
gi|295321491|pdb|2WNR|C Chain C, The Structure Of Methanothermobacter Thermautotrophicus
Exosome Core Assembly
gi|295321493|pdb|2WNR|E Chain E, The Structure Of Methanothermobacter Thermautotrophicus
Exosome Core Assembly
gi|2621767|gb|AAB85187.1| conserved protein [Methanothermobacter thermautotrophicus str.
Delta H]
Length = 271
Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats.
Identities = 46/247 (18%), Positives = 89/247 (36%), Gaps = 16/247 (6%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R+ GR ++ R+IS+ V AEGS VK G+T ++ + P + + G I
Sbjct: 25 RIDGRSLHEFRDISIETGVISKAEGSSRVKLGNTQIIVGVKPQIGEP-FPDTPEMGVILT 83
Query: 62 EYGMLPRSTGNRVKREAVSG-----RQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
+LP ++ R R RMI L + + + +D
Sbjct: 84 NSELLPMASPTFEPGPPDERSVELSRVVDRCIRESRMID--LEKLCIIEGSKVWMLFLDL 141
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQL-------SQVLKGHVAAISCGML 169
+I DG AA+ AL D + + + + + +
Sbjct: 142 HIIDYDGNLFDAAVLATVAALLDTRIPAAEVEDGEVVINREKMQPLPVNRKALMCTFAKI 201
Query: 170 CGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIAD 229
++D E+ + + +T+ G I +Q E ++D +++A +++
Sbjct: 202 GNEIVLDPSLEEEDILTARISIGVTEEGSICAMQKGGE-GPLTRDDVLKAVSIAVEKVPQ 260
Query: 230 LIKLQKD 236
LI+
Sbjct: 261 LIEYLDK 267
>gi|227830375|ref|YP_002832155.1| exosome complex RNA-binding protein Rrp42 [Sulfolobus islandicus
L.S.2.15]
gi|229579193|ref|YP_002837591.1| exosome complex RNA-binding protein Rrp42 [Sulfolobus islandicus
Y.G.57.14]
gi|238619849|ref|YP_002914675.1| exosome complex RNA-binding protein Rrp42 [Sulfolobus islandicus
M.16.4]
gi|284997881|ref|YP_003419648.1| 3'exoribonuclease [Sulfolobus islandicus L.D.8.5]
gi|259645403|sp|C4KHE3|ECX2_SULIK RecName: Full=Probable exosome complex exonuclease 2
gi|259645404|sp|C3MQ47|ECX2_SULIL RecName: Full=Probable exosome complex exonuclease 2
gi|259645407|sp|C3NED0|ECX2_SULIY RecName: Full=Probable exosome complex exonuclease 2
gi|227456823|gb|ACP35510.1| 3' exoribonuclease [Sulfolobus islandicus L.S.2.15]
gi|228009907|gb|ACP45669.1| 3' exoribonuclease [Sulfolobus islandicus Y.G.57.14]
gi|238380919|gb|ACR42007.1| 3' exoribonuclease [Sulfolobus islandicus M.16.4]
gi|284445776|gb|ADB87278.1| 3'exoribonuclease [Sulfolobus islandicus L.D.8.5]
Length = 275
Score = 109 bits (273), Expect = 2e-22, Method: Composition-based stats.
Identities = 58/254 (22%), Positives = 94/254 (37%), Gaps = 23/254 (9%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R GR+ R +S+T +K A+GS LVK G T +L LE P + G +
Sbjct: 28 RQDGRKLTDYRPLSITLDYAKKADGSALVKLGTTMVLAGTKLEIDKP-YEDTPNQGNLIV 86
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALG--------SRQII 113
+LP + G + E+ R++ R+LR L +
Sbjct: 87 NVELLPLAYETFEP-----GPPDENAIELARVVDRSLRDSKALDLTKLVIEPGKSVWTVW 141
Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDC--------SNKFQLSQVLKGHVAAIS 165
+D V+ G A + AL++ + + N+ L V +S
Sbjct: 142 LDVYVLDYGGNVLDACTLASVAALYNTKVYKVEQDSNGFRVNKNEVVGKLPLNHPVVTVS 201
Query: 166 CGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKD 225
+ Y IVD D E+S +D +F T IV +Q S + + S N A+
Sbjct: 202 IAKVDKYLIVDPDLDEESIMDTKVSFSYTPDLKIVGIQKSGK-GSMSLQDIDQAENTARL 260
Query: 226 RIADLIKLQKDVIS 239
L++ K +
Sbjct: 261 VAVKLLEELKKQLG 274
>gi|91772268|ref|YP_564960.1| exosome complex RNA-binding protein Rrp42 [Methanococcoides
burtonii DSM 6242]
gi|91711283|gb|ABE51210.1| Archaeal exosome complex exoribonuclease [Methanococcoides burtonii
DSM 6242]
Length = 259
Score = 109 bits (273), Expect = 2e-22, Method: Composition-based stats.
Identities = 51/240 (21%), Positives = 92/240 (38%), Gaps = 15/240 (6%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R GR ++ R++ + V AEGS V GDT +L L+ P + + G I
Sbjct: 22 REDGRGFDETRDLIIETNVIDKAEGSAKVLLGDTQVLVGVKLQVGSP-FADSADKGVIIT 80
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRA--------LRSVVDLSALGSRQII 113
+ P ++ N +G ++ E+ R++ R L + +
Sbjct: 81 SMELNPIASPNF-----EAGPPREKAIEMARVVDRGIRESGAIDLNKLCITEGEEVWIVF 135
Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP 173
ID V+ G AA GA AL E + ++ ++S + G
Sbjct: 136 IDVHVLNDSGNLLDAASLGAIAALMTATIPGEREGRGEDVKLPIREMPVSLSFIDIGGEL 195
Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
++D E+S D+ V G I +Q S T S+++F + +++ A + +
Sbjct: 196 VIDATNNEESVSDLRLTIVTNQDGSICAMQKSG-PGTLSEENFLRSVEKSREVGAKIREE 254
>gi|10640638|emb|CAC12416.1| rRNA processing protein (yeast RRP45) related protein [Thermoplasma
acidophilum]
Length = 240
Score = 109 bits (273), Expect = 2e-22, Method: Composition-based stats.
Identities = 42/240 (17%), Positives = 85/240 (35%), Gaps = 16/240 (6%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R+ GR ++ RE+++ A GS V G+T ++ +E P + G +T
Sbjct: 6 RIDGRLPDEFRELTIIENYIPRANGSAYVALGNTRVVAGVKIEAGEP-FPDTPDQGVLTT 64
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSV--------VDLSALGSRQII 113
+LP + + +G + E+ R++ R +R V +
Sbjct: 65 NVELLPIAFPSF-----EAGPPNDLAIEVSRVVDRGIRESKMISPEKLVIEQGKKVWIVF 119
Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP 173
+D +V+ DG A+ A AL + + + +++ +
Sbjct: 120 LDINVLDYDGNLIDASTIAAVAALRNAVVPASKEG-GEDFKLPVSSTPISVTMVKIGDTL 178
Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
+ D ED T+ GHI +Q E F+ + + ++ + L +
Sbjct: 179 VCDPSLEEDQICGGRITVTTTEDGHIRAMQK-GEIGAFTVEDVKKAVKMSLEVGKKLREK 237
>gi|16082607|ref|NP_394748.1| exosome complex RNA-binding protein Rrp42 [Thermoplasma acidophilum
DSM 1728]
gi|29336948|sp|Q9HIP1|ECX2_THEAC RecName: Full=Probable exosome complex exonuclease 2
Length = 260
Score = 109 bits (273), Expect = 3e-22, Method: Composition-based stats.
Identities = 42/240 (17%), Positives = 85/240 (35%), Gaps = 16/240 (6%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R+ GR ++ RE+++ A GS V G+T ++ +E P + G +T
Sbjct: 26 RIDGRLPDEFRELTIIENYIPRANGSAYVALGNTRVVAGVKIEAGEP-FPDTPDQGVLTT 84
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSV--------VDLSALGSRQII 113
+LP + + +G + E+ R++ R +R V +
Sbjct: 85 NVELLPIAFPSF-----EAGPPNDLAIEVSRVVDRGIRESKMISPEKLVIEQGKKVWIVF 139
Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP 173
+D +V+ DG A+ A AL + + + +++ +
Sbjct: 140 LDINVLDYDGNLIDASTIAAVAALRNAVVPASKEG-GEDFKLPVSSTPISVTMVKIGDTL 198
Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
+ D ED T+ GHI +Q E F+ + + ++ + L +
Sbjct: 199 VCDPSLEEDQICGGRITVTTTEDGHIRAMQK-GEIGAFTVEDVKKAVKMSLEVGKKLREK 257
>gi|288869793|ref|ZP_06409499.1| putative exosome complex exonuclease 2 [Methanobrevibacter smithii
DSM 2374]
gi|288860271|gb|EFC92569.1| putative exosome complex exonuclease 2 [Methanobrevibacter smithii
DSM 2374]
Length = 265
Score = 109 bits (273), Expect = 3e-22, Method: Composition-based stats.
Identities = 46/246 (18%), Positives = 84/246 (34%), Gaps = 22/246 (8%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R GR+ ++ R+IS+ V AEGS VK GDT ++ + P + G +
Sbjct: 25 REDGRELDEYRDISIETGVISKAEGSARVKIGDTQVIVGIKPQIGAP-FPDTPDLGVLMT 83
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRA--------LRSVVDLSALGSRQII 113
MLP + S E+ R++ R L + +
Sbjct: 84 NCEMLPMADPTFEPGP-----PSEDSIELARVVDRGIRESELVDLDKLCVEEGKHVWMLF 138
Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCS-------NKFQLSQVLKGHVAAISC 166
ID +I G A AL + ++ + + VA +
Sbjct: 139 IDLHIIDNCGNLFDACELAVMAALKSTKLPSASIADDEVVLDHENTIDLPINNEVAMCTF 198
Query: 167 GMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226
+ I+D E+ N +T G+I +Q +++ F ++ A +
Sbjct: 199 VKIGDKLILDPTLNEEKVASARLNVGVTKDGNICAMQKGG-ILPLTKEDIFYCVDKAVSK 257
Query: 227 IADLIK 232
+L++
Sbjct: 258 TKELVE 263
>gi|133918795|emb|CAL29602.1| polyribonucleotide nucleotidyltransferase [Agrobacterium
rhizogenes]
Length = 180
Score = 109 bits (273), Expect = 3e-22, Method: Composition-based stats.
Identities = 31/167 (18%), Positives = 62/167 (37%), Gaps = 8/167 (4%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR + +R I V GS L G+T + ATL +E+ +
Sbjct: 7 RIDGRDLSTVRAIVSEVGVLPRTHGSSLFTRGETQAIVVATLGTGEDEQYVDSLTGMYKE 66
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + + R+ G + RA+R ++ + + + +
Sbjct: 67 RFLLHYNFPPYSVGETGRMGSPGRREIGHGKL----AWRAVRPMLPTAEQFPYTLRVVSE 122
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAI 164
+ +++G + A + G +AL D + + + + A+
Sbjct: 123 ITESNGSSSMATVCGTSLALMDAGVPLAKPVAGIAMGLIKEDERFAV 169
>gi|301118164|ref|XP_002906810.1| polyribonucleotide nucleotidyltransferase, putative [Phytophthora
infestans T30-4]
gi|262108159|gb|EEY66211.1| polyribonucleotide nucleotidyltransferase, putative [Phytophthora
infestans T30-4]
Length = 893
Score = 109 bits (272), Expect = 3e-22, Method: Composition-based stats.
Identities = 44/259 (16%), Positives = 78/259 (30%), Gaps = 24/259 (9%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE---------------E 45
+RL GR +R + + V A GS L G+T L + TL
Sbjct: 403 VRLDGRPVRIVRPLEMKAAVLPMAHGSSLFARGETQTLCSVTLGPLERGIRLRGALHEAR 462
Query: 46 KVPMWIRNTKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLS 105
+ Y P + + R G +A+ ++
Sbjct: 463 EQAERDAPAPFKHAMLHYEFPPFCVNETGRVGGTNRRMIGHGAL----AEKAVLPILPSI 518
Query: 106 ALGSRQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAI- 164
+ + +V+ +DG + A + G +AL D + + V G A
Sbjct: 519 TEFPYTVRMTSEVVGSDGSSSMATVCGVSLALMDAGVPVRRAVAGIAIGLVTAGDPFACQ 578
Query: 165 --SCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAER-ATFSQDHFFAMLN 221
+ D+ ED D+D T SG + +Q + L
Sbjct: 579 EKRIEEGNYQLVTDILGSEDHYGDMDFKVAGTTSG-VTALQLDVKLPGGVPLFVLKEGLR 637
Query: 222 LAKDRIADLIKLQKDVISN 240
AK +++ + +S
Sbjct: 638 EAKHARLHILRRMSNELSE 656
Score = 74.9 bits (182), Expect = 1e-11, Method: Composition-based stats.
Identities = 34/234 (14%), Positives = 68/234 (29%), Gaps = 34/234 (14%)
Query: 20 VSKYAEGSCLVKFGDTHLLTTAT------------LEEKVPMWIRNTKHGWITAEYGMLP 67
++K A+G+ L G T LLTT + + G++P
Sbjct: 90 LAKLADGAVLASCGRTVLLTTVVSGDHHGNPSVNGGSTQRDFLPLTVDFRVKSHAVGLIP 149
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
+ R R++ RA+R + + Q++ +
Sbjct: 150 DNQKRREFTG------SDEEVLQSRVVDRAIRPLFPRDYCENTQVLATVQSYDPNNDPLV 203
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
A+ + G V + + G +V+ + +
Sbjct: 204 VAVNS-------------ASAVLSMSDIPWDGPVGCVRVVEVDGQLVVNPTAPQREAATM 250
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
D + T I V+ S + ++ L+LA I+ QK + +
Sbjct: 251 DVLYAGTAEHAI-MVEASGDE--VTEARLDEALDLAHTNAVSAIEEQKKLAAEH 301
>gi|167043479|gb|ABZ08176.1| putative 3' exoribonuclease family, domain 1 [uncultured marine
microorganism HF4000_APKG2H5]
Length = 238
Score = 109 bits (272), Expect = 3e-22, Method: Composition-based stats.
Identities = 61/240 (25%), Positives = 101/240 (42%), Gaps = 23/240 (9%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE-EKVPMWIRNTKHGWIT 60
R+ GR+ +R IS+ V A GS V++G H++ E P I +
Sbjct: 16 RMDGRKPADLRPISIEVGVVPVAAGSACVRWGTNHVIAAVYGPMEAHPRKISRQDRAVLD 75
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
Y M P ST +R++ RS+EI ++ AL SVV L +I ++ +++
Sbjct: 76 VRYNMAPFSTTDRIRPGFNR-----RSREISKVTSDALESVVLLEMYPRSKIRVEIEILC 130
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
A+ GTR +T A VAL M D V +++ G + G I DL+
Sbjct: 131 AEAGTRCVGLTAASVALAHAGIPMTD-------------MVVSVASGKINGVVICDLNKE 177
Query: 181 EDSTIDVDANFVM-TDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
ED+ + D M +SG +V +Q + S D F + + + ++ +
Sbjct: 178 EDNYGEADLPMGMLPNSGDLVFLQMDGD---LSPDEFQQAWDYNMEAGLAVHEIMVQALK 234
>gi|323449631|gb|EGB05517.1| hypothetical protein AURANDRAFT_59314 [Aureococcus anophagefferens]
Length = 736
Score = 109 bits (272), Expect = 3e-22, Method: Composition-based stats.
Identities = 40/239 (16%), Positives = 76/239 (31%), Gaps = 19/239 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKV------PMWIRNTK 55
R GR +++R I + R A GS + G+T L T TL +
Sbjct: 349 RSDGRATDEVRPIDVAMRPLPTAHGSAVFTRGETQSLATCTLGDNSMNLRNDDALDDAKP 408
Query: 56 HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115
+Y P S G + A R+ G +ALR+ + + ++
Sbjct: 409 DKRFYLQYAFPPSSVGETGRVGAPGRREVGHGAL----AEKALRAAMPDKDAFPYSVRVE 464
Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIV 175
+ ++ G + A++ G +AL D + + + +
Sbjct: 465 SLITESCGSSSMASVCGGCLALLDGGVPLRCSVAGVAM--------GVLLADGEDPVVLT 516
Query: 176 DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
D+ ED+ +D + G I Q + S + A+ ++
Sbjct: 517 DILGVEDALGSMDFKVAGSAEG-ISAFQLDVKTLGLSAATLGDAMGQARAARLHVLSEM 574
Score = 51.8 bits (122), Expect = 8e-05, Method: Composition-based stats.
Identities = 35/226 (15%), Positives = 57/226 (25%), Gaps = 21/226 (9%)
Query: 13 EISLTRRVS-KYAEGSCLVKFGDTHL---LTTATLEEKVPMWIRNTKHGWITAEYGMLPR 68
+ L + A+ + + K G T + L + + + ++ + G
Sbjct: 52 PLVLETGRLGRQADAAVIAKRGGTTVYTTLCVGSADGGGDFLPMSVEYQERYSSTGRTSG 111
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
R R + R+I R LR V Q+I
Sbjct: 112 GYNKRDG------RANDKEILTCRLIDRPLRPTVVDGWCADLQLISWVLSYDGQYPADVL 165
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+ A AL L V V A + + D E
Sbjct: 166 AVQAAAAALQLSTVP--------TLCDVGCARVVATADDDGAVAFVSDPTVEELEAAAFQ 217
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
+V V+ AE D L A A + +
Sbjct: 218 IVVGSGGD-SVVMVE--AEGDFVGDDVAVEALTRATADAARVGEAI 260
>gi|301773434|ref|XP_002922118.1| PREDICTED: exosome complex exonuclease RRP41-like isoform 2
[Ailuropoda melanoleuca]
Length = 240
Score = 109 bits (272), Expect = 3e-22, Method: Composition-based stats.
Identities = 55/242 (22%), Positives = 90/242 (37%), Gaps = 24/242 (9%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R+ GR+ ++R+I V A+GS ++ G+T L + +
Sbjct: 13 RVDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVVYGPHEAKGRRD---RALVNC 69
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
+Y STG R +R + S E+ + + + + QI I V+QA
Sbjct: 70 QYSSATFSTGERKRRPHGDRK----SCEMGLQLRQTFEAAILTQLHPRSQIDIYVQVLQA 125
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
DGGT A + A +A+ D M D V A S G + + DL + E
Sbjct: 126 DGGTYAACVNAATLAVLDAGIPMRDF-------------VCACSAGFVDSTALADLSHVE 172
Query: 182 DSTIDVDANFV-MTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
++ + SG I ++ A +DH +L A D+ L V+
Sbjct: 173 EAAGGPQLALALLPASGQIALLEMDAR---LHEDHLEQVLEAAAQAARDVHTLLDHVVRQ 229
Query: 241 EV 242
V
Sbjct: 230 HV 231
>gi|148642301|ref|YP_001272814.1| exosome complex RNA-binding protein Rrp42 [Methanobrevibacter
smithii ATCC 35061]
gi|148551318|gb|ABQ86446.1| ribonuclease PH-related protein [Methanobrevibacter smithii ATCC
35061]
Length = 262
Score = 109 bits (272), Expect = 4e-22, Method: Composition-based stats.
Identities = 46/246 (18%), Positives = 85/246 (34%), Gaps = 22/246 (8%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R GR+ ++ R+IS+ V AEGS VK GDT ++ + P + G +
Sbjct: 22 REDGRELDEYRDISIETDVISKAEGSARVKIGDTQVIVGIKPQIGAP-FPDTPDLGVLMT 80
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRA--------LRSVVDLSALGSRQII 113
MLP + S E+ R++ R L + +
Sbjct: 81 NCEMLPMADPTFEPGP-----PSEDSIELARVVDRGIRESELVDLDKLCVEEGKHVWMLF 135
Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCS-------NKFQLSQVLKGHVAAISC 166
ID +I G A AL + ++ + + VA +
Sbjct: 136 IDLHIIDNCGNLFDACELAVMAALKSTKLPSASIADDEVVLDHENTIDLPINNEVAMCTF 195
Query: 167 GMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226
+ I+D E+ N +T G+I +Q + +++ F ++ A +
Sbjct: 196 VKIGDKLILDPTLNEEKVASARLNVGVTKDGNICAMQKGG-ISPLTKEDIFYCVDKAVSK 254
Query: 227 IADLIK 232
+L++
Sbjct: 255 TKELVE 260
>gi|289607155|emb|CBI60875.1| unnamed protein product [Sordaria macrospora]
Length = 148
Score = 109 bits (271), Expect = 4e-22, Method: Composition-based stats.
Identities = 81/134 (60%), Positives = 105/134 (78%), Gaps = 3/134 (2%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+R ++MR I++ +++AEGSCL+ FGDT +L TA+LEE++P W+R GW+T
Sbjct: 18 IRP---HPDEMRPITIETNFTRHAEGSCLIGFGDTKVLVTASLEERLPPWLRGKGEGWVT 74
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEYGMLPR+T R REA G+Q GR+QEIQR+IGR+LR+VVDL ALG RQI +DCDVIQ
Sbjct: 75 AEYGMLPRATHTRGSREAAKGKQSGRTQEIQRLIGRSLRAVVDLKALGERQITLDCDVIQ 134
Query: 121 ADGGTRTAAITGAW 134
ADGGTRTA+I+GAW
Sbjct: 135 ADGGTRTASISGAW 148
>gi|330803994|ref|XP_003289985.1| hypothetical protein DICPUDRAFT_88747 [Dictyostelium purpureum]
gi|325079933|gb|EGC33511.1| hypothetical protein DICPUDRAFT_88747 [Dictyostelium purpureum]
Length = 247
Score = 109 bits (271), Expect = 4e-22, Method: Composition-based stats.
Identities = 50/241 (20%), Positives = 101/241 (41%), Gaps = 18/241 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+R+ GR+ N++R I++ VS A+GS + G+T ++ ++ + ++ I
Sbjct: 12 LRIDGRRANELRRINIQMGVSNRADGSAYYEQGNTKIIAAVYGPREISVSGQSIFDRAIV 71
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
S ++ + + EI ++ +A S + QI I V+Q
Sbjct: 72 KC-EFATSSFSTTERKPQQKTKGDRATTEISNLVKQAFESTIQTHLYPRSQINIYIQVLQ 130
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
+DGG + AAI + +AL D M+D V A+S + G ++DL++
Sbjct: 131 SDGGLKAAAINASTLALIDAGISMKDF-------------VCAVSTSCIDGVAVLDLNHI 177
Query: 181 EDSTIDVDANFVM-TDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
E+ + D + G ++ + ++ QD F ++L L + + + D +
Sbjct: 178 EERSGGPDCLLSIQPQIGGVISLNMDSK---VPQDLFESVLELGEKGCKKIFSILSDQVK 234
Query: 240 N 240
Sbjct: 235 K 235
>gi|161527941|ref|YP_001581767.1| exosome complex RNA-binding protein Rrp42 [Nitrosopumilus maritimus
SCM1]
gi|160339242|gb|ABX12329.1| 3' exoribonuclease [Nitrosopumilus maritimus SCM1]
Length = 272
Score = 108 bits (270), Expect = 5e-22, Method: Composition-based stats.
Identities = 45/246 (18%), Positives = 84/246 (34%), Gaps = 12/246 (4%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R+ GR ++ RE+S+ A GS V+ GDT ++ ++ P + G
Sbjct: 24 RVDGRALDESREVSIETNAIPKANGSARVRLGDTEVVCGVKIQPDRP-FPDTGDKGLFIC 82
Query: 62 EYGMLPRSTGNRV-----KREAVSGRQGGRSQEIQRMIG-RALRSVVDLSALGSRQIIID 115
+LP S R R MI L D S +G +
Sbjct: 83 TAELLPLSHPTVETGPPGPEVIELARVVDRGIRESHMIDVSQLVIEKDKSVIGVFADNVV 142
Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSN----KFQLSQVLKGHVAAISCGMLCG 171
D + A T A ++ + D + ++ + +++ G +
Sbjct: 143 VDYDGNLFDACSYAATAALLSSKSPKWNWVDDAPALVEGEEVDVPITTIPVSVTMGKIGN 202
Query: 172 YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231
+ IVD + E +++D G+I +Q + F+QD ++ A +
Sbjct: 203 HIIVDPNGDEWASMDARITITSDSDGNICALQKGGD-DGFTQDEIVQCGEISVRVGAKIR 261
Query: 232 KLQKDV 237
+ K
Sbjct: 262 EKLKAA 267
>gi|66802544|ref|XP_635144.1| hypothetical protein DDB_G0291328 [Dictyostelium discoideum AX4]
gi|60463463|gb|EAL61648.1| hypothetical protein DDB_G0291328 [Dictyostelium discoideum AX4]
Length = 247
Score = 108 bits (270), Expect = 5e-22, Method: Composition-based stats.
Identities = 42/240 (17%), Positives = 90/240 (37%), Gaps = 16/240 (6%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+R+ GR+ N++R I++ + K A+GS + G+T ++ ++ + + +
Sbjct: 12 LRIDGRRANELRRINVEMGIFKRADGSAYYEQGNTKIIAAVYGPREISVSGKGVFDRAVV 71
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
+ ++ + + EI ++ +A S + QI I V+Q
Sbjct: 72 KCEFSSSSFSTT-ERKPQQKTKGDRVTTEIANLVKQAFESTIHTHLYPRSQINIYLQVLQ 130
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
+DGG + AAI + +AL D M+D + SC ++
Sbjct: 131 SDGGLKAAAINASTLALIDAGISMKDFIC-----------ACSTSCIDGIAVLDLNNIEE 179
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
D + G ++ + ++ QD F ++L L + + + D +
Sbjct: 180 RSGGPDCLLSIQ-PQIGGVISLNMDSK---VPQDLFESVLELGEKGCKKIFSILSDYVKK 235
>gi|222444528|ref|ZP_03607043.1| hypothetical protein METSMIALI_00140 [Methanobrevibacter smithii
DSM 2375]
gi|222434093|gb|EEE41258.1| hypothetical protein METSMIALI_00140 [Methanobrevibacter smithii
DSM 2375]
Length = 265
Score = 108 bits (270), Expect = 5e-22, Method: Composition-based stats.
Identities = 46/246 (18%), Positives = 85/246 (34%), Gaps = 22/246 (8%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R GR+ ++ R+IS+ V AEGS VK GDT ++ + P + G +
Sbjct: 25 REDGRELDEYRDISIETDVISKAEGSARVKIGDTQVIVGIKPQIGAP-FPDTPDLGVLMT 83
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRA--------LRSVVDLSALGSRQII 113
MLP + S E+ R++ R L + +
Sbjct: 84 NCEMLPMADPTFEPGP-----PSEDSIELARVVDRGIRESELVDLDKLCVEEGKHVWMLF 138
Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCS-------NKFQLSQVLKGHVAAISC 166
ID +I G A AL + ++ + + VA +
Sbjct: 139 IDLHIIDNCGNLFDACELAVMAALKSTKLPSASIADDEVVLDHENTIDLPINNEVAMCTF 198
Query: 167 GMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226
+ I+D E+ N +T G+I +Q + +++ F ++ A +
Sbjct: 199 VKIGDKLILDPTLNEEKVASARLNVGVTKDGNICAMQKGG-ISPLTKEDIFYCVDKAVSK 257
Query: 227 IADLIK 232
+L++
Sbjct: 258 TKELVE 263
>gi|194215186|ref|XP_001917049.1| PREDICTED: similar to Exosome complex exonuclease RRP41 (Ribosomal
RNA-processing protein 41) (Exosome component 4) (p12A)
[Equus caballus]
Length = 245
Score = 108 bits (270), Expect = 5e-22, Method: Composition-based stats.
Identities = 56/244 (22%), Positives = 92/244 (37%), Gaps = 23/244 (9%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVP--MWIRNTKHGWI 59
R+ GR+ ++R+I V A+GS ++ G+T L ++ +
Sbjct: 13 RVDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVVYGPHEIRGSRARALPDRALV 72
Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119
+Y STG R +R + S E+ + + + + QI I V+
Sbjct: 73 NCQYSSATFSTGERKRRPHGDRK----SCEMGLQLRQTFEAAILTQLHPRSQIDIYVQVL 128
Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179
QADGGT A + A +A+ D M D V A S G + G + DL +
Sbjct: 129 QADGGTYAACVNAATLAVMDAGIPMRDF-------------VCACSAGFVDGTALADLSH 175
Query: 180 GEDSTIDVDANFV-MTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
E++ + SG I ++ A +DH +L A D+ L V+
Sbjct: 176 VEEAAGGPQLALALLPASGQIALLEMDAR---LHEDHLEQVLEAAARAARDVHTLLDRVV 232
Query: 239 SNEV 242
V
Sbjct: 233 RQHV 236
>gi|296227067|ref|XP_002759197.1| PREDICTED: exosome complex exonuclease RRP41-like [Callithrix
jacchus]
Length = 245
Score = 108 bits (270), Expect = 5e-22, Method: Composition-based stats.
Identities = 56/244 (22%), Positives = 92/244 (37%), Gaps = 23/244 (9%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVP--MWIRNTKHGWI 59
R+ GR+ ++R+I V A+GS ++ G+T L ++ +
Sbjct: 13 RVDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVVYGPHEIRGSRARALPDRALV 72
Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119
+Y STG R +R + S E+ + + + + QI I V+
Sbjct: 73 NCQYSSATFSTGERKRRPHGDRK----SCEMGLQLRQTFEAAILTQLHPRSQIDIYVQVL 128
Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179
QADGGT A + A +A+ D M D V A S G + G + DL +
Sbjct: 129 QADGGTYAACVNAATLAVLDAGIPMRDF-------------VCACSAGFVDGTALADLSH 175
Query: 180 GEDSTIDVDANFV-MTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
E++ + SG I ++ A +DH +L A D+ L V+
Sbjct: 176 VEEAAGGPQLALALLPASGQIALLEMDAR---LHEDHLEQVLEAAAQAAQDVHILLDRVV 232
Query: 239 SNEV 242
V
Sbjct: 233 RQHV 236
>gi|311253303|ref|XP_003125499.1| PREDICTED: exosome complex exonuclease RRP41-like isoform 1 [Sus
scrofa]
Length = 245
Score = 108 bits (270), Expect = 6e-22, Method: Composition-based stats.
Identities = 55/244 (22%), Positives = 92/244 (37%), Gaps = 23/244 (9%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVP--MWIRNTKHGWI 59
R+ GR+ ++R+I V A+GS ++ G+T L ++ +
Sbjct: 13 RVDGRRARELRKIQARMGVFAQADGSAYIEQGNTKALAVVYGPHEIRGSRSRALPDRALV 72
Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119
+Y STG R +R + S E+ + +A + + QI I V+
Sbjct: 73 NCQYSSATFSTGERKRRPHGDRK----SCEMGLQLRQAFEAAILTQLHPRSQIDIYVQVL 128
Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179
QADGG A + A +A+ D M D V A S G + G + DL +
Sbjct: 129 QADGGIYAACVNVATLAVLDAGIPMRDF-------------VCACSAGFVDGTALADLSH 175
Query: 180 GEDSTIDVDANFV-MTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
E++ + SG I ++ A +DH +L A D+ + V+
Sbjct: 176 VEEAAGGPQLALALLPASGQIALLEMDAR---LHEDHLEQVLEAAAQAARDVHTVLDRVV 232
Query: 239 SNEV 242
V
Sbjct: 233 RQHV 236
>gi|301773432|ref|XP_002922117.1| PREDICTED: exosome complex exonuclease RRP41-like isoform 1
[Ailuropoda melanoleuca]
Length = 245
Score = 108 bits (270), Expect = 6e-22, Method: Composition-based stats.
Identities = 55/244 (22%), Positives = 91/244 (37%), Gaps = 23/244 (9%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVP--MWIRNTKHGWI 59
R+ GR+ ++R+I V A+GS ++ G+T L ++ +
Sbjct: 13 RVDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVVYGPHEIRGSRARALPDRALV 72
Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119
+Y STG R +R + S E+ + + + + QI I V+
Sbjct: 73 NCQYSSATFSTGERKRRPHGDRK----SCEMGLQLRQTFEAAILTQLHPRSQIDIYVQVL 128
Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179
QADGGT A + A +A+ D M D V A S G + + DL +
Sbjct: 129 QADGGTYAACVNAATLAVLDAGIPMRDF-------------VCACSAGFVDSTALADLSH 175
Query: 180 GEDSTIDVDANFV-MTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
E++ + SG I ++ A +DH +L A D+ L V+
Sbjct: 176 VEEAAGGPQLALALLPASGQIALLEMDAR---LHEDHLEQVLEAAAQAARDVHTLLDHVV 232
Query: 239 SNEV 242
V
Sbjct: 233 RQHV 236
>gi|213024185|ref|ZP_03338632.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Typhi str. 404ty]
Length = 204
Score = 108 bits (270), Expect = 6e-22, Method: Composition-based stats.
Identities = 38/200 (19%), Positives = 75/200 (37%), Gaps = 17/200 (8%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR+++ +R + + V GS L G+T L TATL + +V + +
Sbjct: 15 RIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVLDELMGERTD 74
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + R+ G + R + +V+ + + +
Sbjct: 75 SFLFHYNFPPYSVGETGMVGSPKRREIGHGRL----AKRGVLAVMPDMDKFPYTVRVVSE 130
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ +++G + A++ GA +AL D ++ + V +G + +
Sbjct: 131 ITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLSD---------I 181
Query: 178 DYGEDSTIDVDANFVMTDSG 197
ED D+D + G
Sbjct: 182 LGDEDHLGDMDFKVAGSRDG 201
>gi|9506689|ref|NP_061910.1| exosome complex component RRP41 [Homo sapiens]
gi|109087712|ref|XP_001089090.1| PREDICTED: exosome complex exonuclease RRP41 [Macaca mulatta]
gi|114622153|ref|XP_001154573.1| PREDICTED: exosome complex component RRP41 [Pan troglodytes]
gi|332264376|ref|XP_003281213.1| PREDICTED: exosome complex exonuclease RRP41-like [Nomascus
leucogenys]
gi|14285756|sp|Q9NPD3|EXOS4_HUMAN RecName: Full=Exosome complex component RRP41; AltName:
Full=Exosome component 4; AltName: Full=Ribosomal
RNA-processing protein 41; AltName: Full=p12A
gi|8927590|gb|AAF82134.1|AF281133_1 exosome component Rrp41 [Homo sapiens]
gi|7020801|dbj|BAA91279.1| unnamed protein product [Homo sapiens]
gi|12803867|gb|AAH02777.1| Exosome component 4 [Homo sapiens]
gi|119602572|gb|EAW82166.1| exosome component 4 [Homo sapiens]
gi|261860724|dbj|BAI46884.1| exosome component 4 [synthetic construct]
gi|325464127|gb|ADZ15834.1| exosome component 4 [synthetic construct]
Length = 245
Score = 108 bits (270), Expect = 6e-22, Method: Composition-based stats.
Identities = 56/244 (22%), Positives = 92/244 (37%), Gaps = 23/244 (9%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVP--MWIRNTKHGWI 59
R+ GR+ ++R+I V A+GS ++ G+T L ++ +
Sbjct: 13 RVDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVVYGPHEIRGSRARALPDRALV 72
Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119
+Y STG R +R + S E+ + + + + QI I V+
Sbjct: 73 NCQYSSATFSTGERKRRPHGDRK----SCEMGLQLRQTFEAAILTQLHPRSQIDIYVQVL 128
Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179
QADGGT A + A +A+ D M D V A S G + G + DL +
Sbjct: 129 QADGGTYAACVNAATLAVLDAGIPMRDF-------------VCACSAGFVDGTALADLSH 175
Query: 180 GEDSTIDVDANFV-MTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
E++ + SG I ++ A +DH +L A D+ L V+
Sbjct: 176 VEEAAGGPQLALALLPASGQIALLEMDAR---LHEDHLERVLEAAAQAARDVHTLLDRVV 232
Query: 239 SNEV 242
V
Sbjct: 233 RQHV 236
>gi|254479099|ref|ZP_05092451.1| polyribonucleotide nucleotidyltransferase, RNA binding domain
family [Carboxydibrachium pacificum DSM 12653]
gi|214034948|gb|EEB75670.1| polyribonucleotide nucleotidyltransferase, RNA binding domain
family [Carboxydibrachium pacificum DSM 12653]
Length = 328
Score = 108 bits (269), Expect = 7e-22, Method: Composition-based stats.
Identities = 39/234 (16%), Positives = 83/234 (35%), Gaps = 27/234 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKHGWITAEYGML 66
R++ + V++ A G+ VK+GDT +L TA E + + ++ G +
Sbjct: 13 RKLVVQTGKVAQQANGAAWVKYGDTVVLVTACASKEPREGIDFFPLTVEYEERLYSIGKI 72
Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
P R G+ ++ R+I R +R + Q+I + D
Sbjct: 73 PGGFIKR------EGKPSEKAILSARLIDRPIRPLFPEGYRNDVQVIATVLSVDPDAQPE 126
Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
A+ G+ VA G +++ G++ G +++ Y +
Sbjct: 127 IVAMIGSSVA-------------LSISDIPFNGPTGSVAVGLVDGKFVINPTYEQREKSL 173
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
+ T IV V+ A+ ++ + A I +++ + ++
Sbjct: 174 MHLVVSGTKD-AIVMVEAGAKEVP--EETILDAIVYAHQYIKQIVEFIEGIVKE 224
>gi|41615042|ref|NP_963540.1| exosome complex exonuclease Rrp41 [Nanoarchaeum equitans Kin4-M]
gi|40068766|gb|AAR39101.1| NEQ248 [Nanoarchaeum equitans Kin4-M]
Length = 233
Score = 108 bits (269), Expect = 7e-22, Method: Composition-based stats.
Identities = 50/245 (20%), Positives = 84/245 (34%), Gaps = 20/245 (8%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR GR N++R+ + V A+GS + G+T + L + +
Sbjct: 1 MRFDGRDYNEIRDTEMKIGVISKADGSAYCRTGNTIAIAAVYL-------KPGREQSNLK 53
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
Y MLP + R R E+ +I +AL + + I ++I+
Sbjct: 54 VSYRMLPFAGEERKGLG-----LTRREIELSYIIAKALEPAIIFEEIPYLTIEASVEIIK 108
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP-----IV 175
AD GTR AAI +AL M+ + +V + V ++ +
Sbjct: 109 ADAGTRVAAINALSLALAHAGIPMKALVGAIAVGKVGEKIVLDLNKQEEDYDSEIIKKEL 168
Query: 176 DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
Y + I +Q + + + L KD I +I LQK
Sbjct: 169 PQYYEYYGEGKAVDIPMAMYKNKITLLQLDG---SIDRKSLLEAIKLGKDGIKRMIDLQK 225
Query: 236 DVISN 240
I +
Sbjct: 226 IAIED 230
>gi|11498105|ref|NP_069330.1| exosome complex RNA-binding protein Rrp42 [Archaeoglobus fulgidus
DSM 4304]
gi|29336575|sp|O29756|ECX2_ARCFU RecName: Full=Probable exosome complex exonuclease 2
gi|83754328|pdb|2BA0|I Chain I, Archaeal Exosome Core
gi|83754329|pdb|2BA0|H Chain H, Archaeal Exosome Core
gi|83754330|pdb|2BA0|G Chain G, Archaeal Exosome Core
gi|83754337|pdb|2BA1|G Chain G, Archaeal Exosome Core
gi|83754338|pdb|2BA1|H Chain H, Archaeal Exosome Core
gi|83754339|pdb|2BA1|I Chain I, Archaeal Exosome Core
gi|295322010|pdb|3M7N|G Chain G, Archaeoglobus Fulgidus Exosome With Rna Bound To The
Active Site
gi|295322011|pdb|3M7N|H Chain H, Archaeoglobus Fulgidus Exosome With Rna Bound To The
Active Site
gi|295322012|pdb|3M7N|I Chain I, Archaeoglobus Fulgidus Exosome With Rna Bound To The
Active Site
gi|2650132|gb|AAB90743.1| conserved hypothetical protein [Archaeoglobus fulgidus DSM 4304]
Length = 259
Score = 108 bits (269), Expect = 7e-22, Method: Composition-based stats.
Identities = 46/244 (18%), Positives = 91/244 (37%), Gaps = 15/244 (6%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R+ GR ++ R++ + V + AEGS LVK GDT ++ ++ P + G I
Sbjct: 23 RIDGRGFDEFRKVEIIPNVIEKAEGSALVKLGDTQVVVGVKMQPGEP-YPDTPDRGVIIV 81
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSV--------VDLSALGSRQII 113
++P ++ G S E+ R++ R +R V +
Sbjct: 82 NAELVPLASPTFEP-----GPPDENSIELARVVDRGIRESEAVDLSKLVIEEGEKVWIVF 136
Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP 173
+D + DG A+ A AL + E ++ +++ ++
Sbjct: 137 VDIHALDDDGNLLDASALAAIAALMNTKVPAERFDLGEDYLLPVRDLPVSVTSLIVGNKY 196
Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
+VD E S D ++V +Q S + F +L+++ + L +
Sbjct: 197 LVDPSREEMSVGDTTLTITTDKDDNVVAMQKSG-GYLLDEKLFDELLDVSINCARKLREK 255
Query: 234 QKDV 237
K++
Sbjct: 256 FKEI 259
>gi|122920908|pdb|2NN6|B Chain B, Structure Of The Human Rna Exosome Composed Of Rrp41,
Rrp45, Rrp46, Rrp43, Mtr3, Rrp42, Csl4, Rrp4, And Rrp40
Length = 249
Score = 108 bits (269), Expect = 8e-22, Method: Composition-based stats.
Identities = 56/244 (22%), Positives = 92/244 (37%), Gaps = 23/244 (9%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVP--MWIRNTKHGWI 59
R+ GR+ ++R+I V A+GS ++ G+T L ++ +
Sbjct: 17 RVDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVVYGPHEIRGSRARALPDRALV 76
Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119
+Y STG R +R + S E+ + + + + QI I V+
Sbjct: 77 NCQYSSATFSTGERKRRPHGDRK----SCEMGLQLRQTFEAAILTQLHPRSQIDIYVQVL 132
Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179
QADGGT A + A +A+ D M D V A S G + G + DL +
Sbjct: 133 QADGGTYAACVNAATLAVLDAGIPMRDF-------------VCACSAGFVDGTALADLSH 179
Query: 180 GEDSTIDVDANFV-MTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
E++ + SG I ++ A +DH +L A D+ L V+
Sbjct: 180 VEEAAGGPQLALALLPASGQIALLEMDAR---LHEDHLERVLEAAAQAARDVHTLLDRVV 236
Query: 239 SNEV 242
V
Sbjct: 237 RQHV 240
>gi|241119397|ref|XP_002402568.1| exosomal 3'-5' exoribonuclease complex, subunit Rrp41, putative
[Ixodes scapularis]
gi|215493342|gb|EEC02983.1| exosomal 3'-5' exoribonuclease complex, subunit Rrp41, putative
[Ixodes scapularis]
Length = 246
Score = 108 bits (269), Expect = 8e-22, Method: Composition-based stats.
Identities = 57/243 (23%), Positives = 96/243 (39%), Gaps = 23/243 (9%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVP--MWIRNTKHGWI 59
RL GR+ N+ R+I V A+GS ++ G+ +L + +
Sbjct: 13 RLDGRKPNEQRKIDCRLGVFSQADGSAYIEQGNAKVLAAVYGPHEPRGNRSRALHDRVLV 72
Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119
++ M ST R + R +SQE+ I + + + QI I +V+
Sbjct: 73 NCQFSMATFSTFERKR----RPRGDKKSQEMTLHIQQTFEATILTQLYPRSQIDIFVEVL 128
Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179
Q+DGGT + + A +AL D ++D V A S G + G P+VD+
Sbjct: 129 QSDGGTLSVCVNAATLALIDAGIALKDY-------------VCACSVGFIDGVPLVDISS 175
Query: 180 GEDSTIDVDANF-VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
E+S + V+ S IV ++ S+ D+ ML+ A DL + +
Sbjct: 176 IEESNRGPELTVAVLPKSQQIVLLEMSSR---VHVDNLEKMLDAAMKGCTDLHAIFDSRV 232
Query: 239 SNE 241
Sbjct: 233 KEH 235
>gi|52549527|gb|AAU83376.1| 3'-5' exoribonuclease [uncultured archaeon GZfos27G5]
Length = 257
Score = 108 bits (269), Expect = 8e-22, Method: Composition-based stats.
Identities = 48/237 (20%), Positives = 85/237 (35%), Gaps = 9/237 (3%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R GR ++ R+IS+ R V K AEGS VK GDT +L +E P + G I
Sbjct: 23 REDGRGFHEYRDISVERDVIKRAEGSARVKIGDTEVLVGVKVELGTP-FPDTPDKGVIIT 81
Query: 62 EYGMLPRSTGNRVKREAVSG-----RQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
++P ++ R R I L + + ID
Sbjct: 82 NAELVPLASPKFESGPPNENSIQLARVVDRGIRGSETID--LDKLCIEEGEKVWMVFIDI 139
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
V+ +G AA GA +L + E + + ++ A + + G +VD
Sbjct: 140 HVLDDNGNLVDAAALGAITSLLNLRIPNERYGLTGENTLPMRDTPVAATMVEIEGNILVD 199
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
+ E + + G + +Q S + + M+ + ++ ++ K
Sbjct: 200 PSFDEGNAAASSVTVISNADGTLSGMQKSG-SSGLKEAQIAEMVEIGIEKAGEIRKK 255
>gi|148697598|gb|EDL29545.1| exosome component 4, isoform CRA_b [Mus musculus]
Length = 271
Score = 108 bits (269), Expect = 8e-22, Method: Composition-based stats.
Identities = 54/244 (22%), Positives = 91/244 (37%), Gaps = 23/244 (9%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVP--MWIRNTKHGWI 59
R+ GR+ ++R+I V A+GS ++ G+T L ++ +
Sbjct: 39 RIDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVVYGPHEIRGSRSRALPDRALV 98
Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119
+Y STG R +R + S E+ + + + + QI I V+
Sbjct: 99 NCQYSSATFSTGERKRRPHGDRK----SCEMGLQLRQTFEAAILTQLHPRSQIDIYVQVL 154
Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179
QADGGT A + A +A+ D M D V A S G + G + DL +
Sbjct: 155 QADGGTYAACVNAATLAVMDAGIPMRDF-------------VCACSAGFVDGTALADLSH 201
Query: 180 GEDSTIDVDANFV-MTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
E++ + SG I ++ + +DH +L A + L V+
Sbjct: 202 VEEAAGGPQLALALLPASGQIALLEMDSR---LHEDHLEQVLEAAAQAARGVHTLLDLVV 258
Query: 239 SNEV 242
V
Sbjct: 259 RQHV 262
>gi|57095694|ref|XP_539207.1| PREDICTED: similar to Exosome complex exonuclease RRP41 (Ribosomal
RNA processing protein 41) (Exosome component 4) (p12A)
isoform 1 [Canis familiaris]
Length = 245
Score = 108 bits (269), Expect = 8e-22, Method: Composition-based stats.
Identities = 54/244 (22%), Positives = 91/244 (37%), Gaps = 23/244 (9%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVP--MWIRNTKHGWI 59
R+ GR+ ++R+I V A+GS ++ G+T L ++ +
Sbjct: 13 RVDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVVYGPHEIRGSRARALPDRALV 72
Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119
+Y STG R +R + S E+ + + + + QI I V+
Sbjct: 73 NCQYSSATFSTGERKRRPHGDRK----SCEMGLHLRQTFEAAILTQLHPRSQIDIYVQVL 128
Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179
QADGGT A + A +A+ D M D V A S G + + DL +
Sbjct: 129 QADGGTYAACVNAATLAVLDAGIPMRDF-------------VCACSAGFVDNTALADLSH 175
Query: 180 GEDSTIDVDANFV-MTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
E++ + SG I ++ A +DH +L A D+ + V+
Sbjct: 176 VEEAAGGPQLALALLPASGQIALLEMDAR---LHEDHLEQVLEAAARAARDVHTVLDRVV 232
Query: 239 SNEV 242
V
Sbjct: 233 RQHV 236
>gi|13541139|ref|NP_110827.1| exosome complex RNA-binding protein Rrp42 [Thermoplasma volcanium
GSS1]
gi|29336898|sp|Q97BZ4|ECX2_THEVO RecName: Full=Probable exosome complex exonuclease 2
gi|14324526|dbj|BAB59453.1| nucleotidyltransferase [Thermoplasma volcanium GSS1]
Length = 260
Score = 108 bits (268), Expect = 9e-22, Method: Composition-based stats.
Identities = 42/240 (17%), Positives = 83/240 (34%), Gaps = 16/240 (6%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R+ GR ++ REI++ A GS V G T ++ +E P + G +T
Sbjct: 26 RIDGRLPDEFREITIIENYVPRANGSAYVALGKTRVVAGVKIEAGEP-FPDTPDQGVLTT 84
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDL--------SALGSRQII 113
+LP + + +G + E+ R++ R +R + +
Sbjct: 85 NVELLPIAFPSF-----EAGPPNDLAIEVSRVVDRGIRESKMISPDKLVIEQGKKVWIVF 139
Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP 173
+D +V+ DG A A AL + + + +++ +
Sbjct: 140 LDINVLDYDGNLIDACTIAAVSALRNAIVPASREG-GEDFKLPVVNTPISVTMVKIGDTL 198
Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
+ D ED T+ GHI +Q E F+ D + ++ ++ +
Sbjct: 199 VCDPSLEEDQICGGRITVTTTEDGHIRAMQK-GEIGVFTLDDVKKAIKMSLKVGKNIREK 257
>gi|330952125|gb|EGH52385.1| ribonuclease PH [Pseudomonas syringae Cit 7]
Length = 186
Score = 108 bits (268), Expect = 1e-21, Method: Composition-based stats.
Identities = 95/186 (51%), Positives = 129/186 (69%), Gaps = 1/186 (0%)
Query: 55 KHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIII 114
G +TAEYGMLPR+TG R +REA G+QGGR+ EIQR+IGR+LR+ +D+S LG + +
Sbjct: 2 GRGGLTAEYGMLPRATGERNQREASRGKQGGRTLEIQRLIGRSLRAALDMSKLGDVTLYV 61
Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPI 174
DCDVIQADGGTRTA+ITGA VAL D L+ ++ + LK +AA+S GM G P+
Sbjct: 62 DCDVIQADGGTRTASITGAMVALADALKVIKKRG-GLKGGDPLKQMIAAVSVGMYQGEPV 120
Query: 175 VDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
+DLDY EDS + D N VMT +G +EVQG+AE A F + AML LA+ + +L +LQ
Sbjct: 121 LDLDYLEDSAAETDLNVVMTSAGGFIEVQGTAEGAPFQPEELNAMLALAQKGMTELFELQ 180
Query: 235 KDVISN 240
+ +++
Sbjct: 181 RAALAD 186
>gi|12001940|gb|AAG43113.1|AF058952_1 polynucleotide phosphorylase A [Lactococcus lactis subsp. cremoris
MG1363]
Length = 425
Score = 108 bits (268), Expect = 1e-21, Method: Composition-based stats.
Identities = 38/232 (16%), Positives = 82/232 (35%), Gaps = 25/232 (10%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKV--PMWIRNTKHGWITAEYGMLPR 68
R +++ ++ G+ +V++GDT +LT AT+ + + + G P
Sbjct: 13 RTLTVETGAIATQPNGAVVVRYGDTTVLTAATMGKMATGDFFPLQVNYEEKMYAAGKFPG 72
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
R R + R+I R +R + Q+I + R A
Sbjct: 73 GFNKR------EARPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDENASGRVA 126
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+ G+ +A G +A + + G I++ E ++
Sbjct: 127 AMFGSSLA-------------LAISDIPFDGPIAGVEVAYIDGKYIINPTVAEKEASSLE 173
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
+ + I V+ A+ S++ L + + +LI+ Q ++++
Sbjct: 174 LSVAGNIN-AINMVESGAKE--LSEEVMLGALLAGHNAVKELIEFQNEIVAK 222
Score = 83.0 bits (203), Expect = 4e-14, Method: Composition-based stats.
Identities = 21/105 (20%), Positives = 39/105 (37%), Gaps = 6/105 (5%)
Query: 1 MRLSGRQENQMREISLTRRVSKY--AEGSCLVKFGDTHLLTTATL----EEKVPMWIRNT 54
+R GR+ +++R + + G+ L G T L+T TL E ++ + +
Sbjct: 316 IRPDGRKIDEIRPLDAEIDFTPRSITHGTGLFTRGQTQALSTLTLAPMNEAQIIDGLNDE 375
Query: 55 KHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALR 99
Y S G + A R+ G +R + + L
Sbjct: 376 YKKRFMHHYNFPQYSVGETGRYGAPGRREIGHGALGERALEQVLP 420
>gi|316971903|gb|EFV55625.1| polyribonucleotide nucleotidyltransferase [Trichinella spiralis]
Length = 1172
Score = 108 bits (268), Expect = 1e-21, Method: Composition-based stats.
Identities = 37/250 (14%), Positives = 80/250 (32%), Gaps = 27/250 (10%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK------ 55
R GR +++R I + + GS L + G T ++ + T + + + +
Sbjct: 728 RRDGRTLDELRPIDCSVDLYPSLHGSALFQRGQTQVMCSLTFDSRQAAFRGDVFSLLNSG 787
Query: 56 ----HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQ 111
Y +T + R+ G +ALR VV + +
Sbjct: 788 GITKEKKFMFHYNFASFATNELSSARGIGRRELGHGAL----AEKALRPVVPSDFPFTIR 843
Query: 112 IIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG 171
+ D +++G + A++ +AL D + + + + K
Sbjct: 844 LAADVL--ESNGSSSMASVCAGSLALMDAGVPTKSSVSGVAIGLMSKQD----------Y 891
Query: 172 YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAE-RATFSQDHFFAMLNLAKDRIADL 230
+ D+ ED D+D T +G + +Q + Q F ++
Sbjct: 892 RLLTDIAGIEDFFGDMDFKIAFTSNGEVTAIQLDTKLLGGIDQRIFRQACERGLQANRNV 951
Query: 231 IKLQKDVISN 240
+ ++
Sbjct: 952 QRKMAACLAK 961
Score = 68.3 bits (165), Expect = 9e-10, Method: Composition-based stats.
Identities = 38/231 (16%), Positives = 74/231 (32%), Gaps = 25/231 (10%)
Query: 13 EISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEK-----VPMWIRNTKHGWITAEYGML 66
+ L +++ A+GS + K G T ++ T + + + + A G +
Sbjct: 414 PMILETGQLARLADGSAVAKMGATAVMATVVAKSRSAVQPMMFMPLTVDYRSRAAAVGRI 473
Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
P + R RMI R+LR R +DC V +
Sbjct: 474 PTNFLRR------EIGASDSEILTARMIDRSLRP------AFGRDCYVDCQVSCSLLSLE 521
Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
A +A++ + + V G VA + P+++ +
Sbjct: 522 ADATGADVLAVNAASAALAC------SNVVWNGPVACARVCWVDSRPVLNPSRQQLEMST 575
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQ-DHFFAMLNLAKDRIADLIKLQKD 236
++ + + IV V+ + D +A +LA D + K
Sbjct: 576 LNLVLSVGEHRRIVMVEAGGGSSGSCSLDQLYACCDLAVDSAQRTLDAIKQ 626
>gi|52549122|gb|AAU82971.1| tRNA nucleotidyltransferase [uncultured archaeon GZfos24D9]
Length = 260
Score = 108 bits (268), Expect = 1e-21, Method: Composition-based stats.
Identities = 47/240 (19%), Positives = 90/240 (37%), Gaps = 15/240 (6%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R GR R+I + R + K A+GS V+ GDT +L +E P + G +
Sbjct: 23 RADGRGFLDFRDIIVERDLIKKADGSTRVQIGDTVVLVGVKVEPGAP-FPDTPNKGILMT 81
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRA--------LRSVVDLSALGSRQII 113
++P ++ SG S E+ R++ R L + +
Sbjct: 82 NAELVPLASPEF-----ESGPPNEDSIELARVVDRGIRGSETIDLEKLCIEEGEKVWMVF 136
Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP 173
ID + DG AA GA +L + E + + ++ A++ + G
Sbjct: 137 IDIHTLDNDGNLVDAAALGAITSLLNVTIPYERYGLTGEDTLQIRDTPVAVTVVEIGGNL 196
Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
+VD + E+S + G I +Q S +++ M+ + ++ ++ +
Sbjct: 197 LVDPNVYEESAATSKLTVISNADGSISGLQKSG-STGLTEEKIVKMIEIGIEKAREIREK 255
>gi|52550471|gb|AAU84320.1| 3'-5' exoribonuclease [uncultured archaeon GZfos9D1]
Length = 257
Score = 107 bits (267), Expect = 1e-21, Method: Composition-based stats.
Identities = 47/233 (20%), Positives = 84/233 (36%), Gaps = 5/233 (2%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R GR + REIS+ R V K AEGS VK GDT +L +E P + G I
Sbjct: 23 REDGRGFREYREISVERDVIKRAEGSARVKIGDTEVLVGVKVELGTP-FPDTPDKGVIIT 81
Query: 62 EYGMLPRSTGNRV-KREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGS--RQIIIDCDV 118
++P ++ + Q R + + G + ID V
Sbjct: 82 NAELVPLASPKFESGPPNENSIQLARVVDRGIRGSETIDLDKLCIEKGEKVWMVFIDIHV 141
Query: 119 IQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLD 178
+ +G AA GA +L + E + + ++ A++ + G +VD
Sbjct: 142 LDDNGNLADAAALGAIASLLNLRIPNERYGLTGENTLPMRDTPVAVTTVEIEGNILVDPS 201
Query: 179 YGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231
+ E + + G + +Q S + M+ + ++ ++
Sbjct: 202 FDEGNAAASSVTVISNADGTLSGMQKSGSGG-LKEAQIAEMVEIGIEKAGEIR 253
>gi|297683870|ref|XP_002819616.1| PREDICTED: exosome complex exonuclease RRP41-like [Pongo abelii]
Length = 343
Score = 107 bits (267), Expect = 1e-21, Method: Composition-based stats.
Identities = 56/244 (22%), Positives = 92/244 (37%), Gaps = 23/244 (9%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVP--MWIRNTKHGWI 59
R+ GR+ ++R+I V A+GS ++ G+T L ++ +
Sbjct: 111 RVDGRRAGELRKIQARMGVFAQADGSGYIEQGNTKALAVVYGPHEIRGSRARALPDRALV 170
Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119
+Y STG R +R + S E+ + + + + QI I V+
Sbjct: 171 NCQYSSATFSTGERKRRRHGDRK----SCEMGLQLRQTFEAAILTQLHPRSQIDIYVQVL 226
Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179
QADGGT A + A +A+ D M D V A S G + G + DL +
Sbjct: 227 QADGGTYAACVNAATLAVLDAGIPMRDF-------------VCACSAGFVDGTALADLSH 273
Query: 180 GEDSTIDVDANFV-MTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
E++ + SG I ++ A +DH +L A D+ L V+
Sbjct: 274 VEEAAGGPQLALALLPASGQIALLEMDAR---LHEDHLERVLEAAAQAARDVHTLLDRVV 330
Query: 239 SNEV 242
V
Sbjct: 331 RQHV 334
>gi|291416252|ref|XP_002724360.1| PREDICTED: exosome component 4 [Oryctolagus cuniculus]
Length = 245
Score = 107 bits (267), Expect = 1e-21, Method: Composition-based stats.
Identities = 54/244 (22%), Positives = 91/244 (37%), Gaps = 23/244 (9%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVP--MWIRNTKHGWI 59
R+ GR+ ++R+I V A+GS ++ G+T L ++ +
Sbjct: 13 RVDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVVYGPHEIRGSRSRALPDRALV 72
Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119
+Y ST R +R + S E+ + + + + QI I V+
Sbjct: 73 NCQYSSATFSTAERKRRPHGDRK----SCELGLQLRQTFEAAILTQLHPRSQIDIYVQVL 128
Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179
QADGGT A + A +A+ D M D V A S G + G + DL +
Sbjct: 129 QADGGTYAACVNAATLAVLDAGIPMRDF-------------VCACSAGFVDGTALTDLSH 175
Query: 180 GEDSTIDVDANFV-MTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
E+++ + SG I ++ A +DH +L A + L V+
Sbjct: 176 VEEASGSPQLALALLPASGQIALLEMDAR---LHEDHLEQVLEAAAQAARGVHTLLDRVV 232
Query: 239 SNEV 242
V
Sbjct: 233 RQHV 236
>gi|295322022|pdb|3M85|G Chain G, Archaeoglobus Fulgidus Exosome Y70a With Rna Bound To The
Active Site
gi|295322023|pdb|3M85|H Chain H, Archaeoglobus Fulgidus Exosome Y70a With Rna Bound To The
Active Site
gi|295322024|pdb|3M85|I Chain I, Archaeoglobus Fulgidus Exosome Y70a With Rna Bound To The
Active Site
Length = 259
Score = 107 bits (267), Expect = 1e-21, Method: Composition-based stats.
Identities = 46/244 (18%), Positives = 90/244 (36%), Gaps = 15/244 (6%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R+ GR ++ R++ + V + AEGS LVK GDT ++ ++ P G I
Sbjct: 23 RIDGRGFDEFRKVEIIPNVIEKAEGSALVKLGDTQVVVGVKMQPGEPA-PDTPDRGVIIV 81
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSV--------VDLSALGSRQII 113
++P ++ G S E+ R++ R +R V +
Sbjct: 82 NAELVPLASPTFEP-----GPPDENSIELARVVDRGIRESEAVDLSKLVIEEGEKVWIVF 136
Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP 173
+D + DG A+ A AL + E ++ +++ ++
Sbjct: 137 VDIHALDDDGNLLDASALAAIAALMNTKVPAERFDLGEDYLLPVRDLPVSVTSLIVGNKY 196
Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
+VD E S D ++V +Q S + F +L+++ + L +
Sbjct: 197 LVDPSREEMSVGDTTLTITTDKDDNVVAMQKSG-GYLLDEKLFDELLDVSINCARKLREK 255
Query: 234 QKDV 237
K++
Sbjct: 256 FKEI 259
>gi|126465759|ref|YP_001040868.1| exosome complex RNA-binding protein Rrp42 [Staphylothermus marinus
F1]
gi|126014582|gb|ABN69960.1| ribosomal RNA-processing protein RRP42 [Staphylothermus marinus F1]
Length = 285
Score = 107 bits (267), Expect = 1e-21, Method: Composition-based stats.
Identities = 51/256 (19%), Positives = 95/256 (37%), Gaps = 24/256 (9%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R+ GR+ ++ R I + AEGS VK G+T ++T LE P R G +
Sbjct: 28 RIDGRKLDEYRPIEVFLNPIPKAEGSAAVKLGNTFVITGVKLEIGTPYSDRP-NEGVLQV 86
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSV--------VDLSALGSRQII 113
+P ++ G + E R+I R+LR V + I
Sbjct: 87 HAEFVPLASPTFEP-----GPPDENAIETARVIDRSLREPRAIRLEDLVVIPGKKVWLIF 141
Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHM---------EDCSNKFQLSQVLKGHVAAI 164
D +I G + +AL+ + L +V +
Sbjct: 142 NDLYLIDHYGNIVDTGMLSTMLALNMTKIPRIVSIEDENVVIDKTVKEAPLPLNLNVVTV 201
Query: 165 SCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAK 224
+ G++ IVD + E+ +D F + ++ IV +Q ++++A
Sbjct: 202 TLGIIDDVIIVDPNIEEELVVDSRITFAVDETNRIVGIQKMG-MKGIKPKMIDQLVDIAL 260
Query: 225 DRIADLIKLQKDVISN 240
+ ++L L ++V++N
Sbjct: 261 KKASELHSLLREVLNN 276
>gi|167044982|gb|ABZ09647.1| putative 3' exoribonuclease family, domain 1 [uncultured marine
crenarchaeote HF4000_APKG8G2]
Length = 272
Score = 107 bits (267), Expect = 1e-21, Method: Composition-based stats.
Identities = 43/248 (17%), Positives = 77/248 (31%), Gaps = 16/248 (6%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R+ R ++ R + + V +A GS + GDT +++ ++ P + G
Sbjct: 24 RIDDRALDEPRPLVIDTGVIPHANGSARARLGDTEVVSGIKIQPDKP-FPDMGDKGIFIC 82
Query: 62 EYGMLPR-----STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
+LP TG R R MI L +V + D
Sbjct: 83 TAEILPLAHPSAETGPPQPNVIEIARVVDRGIRESGMID--LSQLVLQKDKSVIGVFADN 140
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQ-------LSQVLKGHVAAISCGML 169
V DG A A A+ + + + +++ G++
Sbjct: 141 VVTDHDGNLFDACSYAAVAAIITSKIPKWEMKDDKPVLIEDQASDTPITTIPISVTMGLM 200
Query: 170 CGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIAD 229
+ IVD + E +D G+IV +Q FS + L+
Sbjct: 201 GEFIIVDPNLDEWECLDARITITTNSDGNIVALQKGG-SDGFSLEQLVKCSELSIAIGKK 259
Query: 230 LIKLQKDV 237
+ + K
Sbjct: 260 IRDIIKQA 267
>gi|167044511|gb|ABZ09186.1| putative 3' exoribonuclease family, domain 1 [uncultured marine
crenarchaeote HF4000_APKG6J21]
Length = 272
Score = 107 bits (267), Expect = 1e-21, Method: Composition-based stats.
Identities = 43/248 (17%), Positives = 77/248 (31%), Gaps = 16/248 (6%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R+ R ++ R + + V +A GS + GDT +++ ++ P + G
Sbjct: 24 RIDDRALDEPRPLVIDTGVIPHANGSARARLGDTEVVSGIKVQPDKP-FPDMGDKGIFIC 82
Query: 62 EYGMLPR-----STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
+LP TG R R MI L +V + D
Sbjct: 83 TAEILPLAHPSAETGPPQPNVIEIARVVDRGIRESGMID--LSQMVLQKDKSVIGVFADN 140
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQ-------LSQVLKGHVAAISCGML 169
V DG A A A+ + + + +++ G++
Sbjct: 141 VVTDHDGNLFDACSYAAVAAIITSKIPKWEMKDDKPVLIEDQASDTPITTIPISVTMGLI 200
Query: 170 CGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIAD 229
+ IVD + E +D G+IV +Q FS + L+
Sbjct: 201 GEFIIVDPNLDEWECLDARITITTNSDGNIVALQKGG-SDGFSLEQLVKCAELSIAIGKK 259
Query: 230 LIKLQKDV 237
+ + K
Sbjct: 260 IRDIIKQA 267
>gi|29611663|ref|NP_780608.1| exosome complex component RRP41 [Mus musculus]
gi|21759405|sp|Q921I9|EXOS4_MOUSE RecName: Full=Exosome complex component RRP41; AltName:
Full=Exosome component 4; AltName: Full=Ribosomal
RNA-processing protein 41
gi|15126706|gb|AAH12277.1| Exosome component 4 [Mus musculus]
gi|26354721|dbj|BAC40987.1| unnamed protein product [Mus musculus]
gi|74184267|dbj|BAE25679.1| unnamed protein product [Mus musculus]
gi|74198393|dbj|BAE39680.1| unnamed protein product [Mus musculus]
Length = 245
Score = 107 bits (266), Expect = 1e-21, Method: Composition-based stats.
Identities = 54/244 (22%), Positives = 91/244 (37%), Gaps = 23/244 (9%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVP--MWIRNTKHGWI 59
R+ GR+ ++R+I V A+GS ++ G+T L ++ +
Sbjct: 13 RIDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVVYGPHEIRGSRSRALPDRALV 72
Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119
+Y STG R +R + S E+ + + + + QI I V+
Sbjct: 73 NCQYSSATFSTGERKRRPHGDRK----SCEMGLQLRQTFEAAILTQLHPRSQIDIYVQVL 128
Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179
QADGGT A + A +A+ D M D V A S G + G + DL +
Sbjct: 129 QADGGTYAACVNAATLAVMDAGIPMRDF-------------VCACSAGFVDGTALADLSH 175
Query: 180 GEDSTIDVDANFV-MTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
E++ + SG I ++ + +DH +L A + L V+
Sbjct: 176 VEEAAGGPQLALALLPASGQIALLEMDSR---LHEDHLEQVLEAAAQAARGVHTLLDLVV 232
Query: 239 SNEV 242
V
Sbjct: 233 RQHV 236
>gi|73974735|ref|XP_857497.1| PREDICTED: similar to Exosome complex exonuclease RRP41 (Ribosomal
RNA processing protein 41) (Exosome component 4) (p12A)
isoform 4 [Canis familiaris]
Length = 244
Score = 107 bits (266), Expect = 2e-21, Method: Composition-based stats.
Identities = 55/243 (22%), Positives = 92/243 (37%), Gaps = 22/243 (9%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW-IT 60
R+ GR+ ++R+I V A+GS ++ G+T L + T+ +
Sbjct: 13 RVDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVVYGPHEARGVRTLTQRKALVN 72
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
+Y STG R +R + S E+ + + + + QI I V+Q
Sbjct: 73 CQYSSATFSTGERKRRPHGDRK----SCEMGLHLRQTFEAAILTQLHPRSQIDIYVQVLQ 128
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGT A + A +A+ D M D V A S G + + DL +
Sbjct: 129 ADGGTYAACVNAATLAVLDAGIPMRDF-------------VCACSAGFVDNTALADLSHV 175
Query: 181 EDSTIDVDANFV-MTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
E++ + SG I ++ A +DH +L A D+ + V+
Sbjct: 176 EEAAGGPQLALALLPASGQIALLEMDAR---LHEDHLEQVLEAAARAARDVHTVLDRVVR 232
Query: 240 NEV 242
V
Sbjct: 233 QHV 235
>gi|307104174|gb|EFN52429.1| hypothetical protein CHLNCDRAFT_12102 [Chlorella variabilis]
Length = 241
Score = 107 bits (266), Expect = 2e-21, Method: Composition-based stats.
Identities = 60/244 (24%), Positives = 92/244 (37%), Gaps = 23/244 (9%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKV-PMWIRNTKHGWI 59
+RL GR+ ++R++ V A+GS L + G+T +L + V + + +
Sbjct: 8 LRLDGRRPKELRQLRAELGVLSSADGSALFEMGNTRVLAAVFGPKPVEQRSQEDERRAIV 67
Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119
EY M STG R +R R I I + + L QI I V+
Sbjct: 68 KCEYAMASFSTGERRRRGKADRRATE----IGMAIRNTMEQTILTELLPRSQIDIYVQVL 123
Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179
QADGGTR A I A +A M D VA+ + G L ++DL+Y
Sbjct: 124 QADGGTRCACINAACMAAAAAAIPMRDL-------------VASCAAGYLESTALLDLNY 170
Query: 180 GEDSTIDVDANFVM--TDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
EDS D + +V +Q S + F +L L + +
Sbjct: 171 MEDSGGGPDVAVAIHANHEDRVVLLQQD---NRLSIETFEEVLELGVAGCRAVAAFMRQQ 227
Query: 238 ISNE 241
+
Sbjct: 228 LLQH 231
>gi|328865596|gb|EGG13982.1| Exosome complex exonuclease rrp41 [Dictyostelium fasciculatum]
Length = 244
Score = 107 bits (266), Expect = 2e-21, Method: Composition-based stats.
Identities = 53/242 (21%), Positives = 98/242 (40%), Gaps = 21/242 (8%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+R+ GR+ N++R +++ V A+GS + G+T + + I
Sbjct: 12 LRIDGRRSNEIRRLNMRMGVLNRADGSSYYEQGNTKITVAIYGPHESTTQKSLFDRASIK 71
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
E+ M ST R V R + E +I +A S V QI I V+Q
Sbjct: 72 CEFAMSSFSTSERK----VKSRFDKTAYETSTLIKQAFESTVLTHLFPRSQIDIYVQVLQ 127
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
+DGG ++AAI +A+ D M D V A S + G ++DL++
Sbjct: 128 SDGGLKSAAINAVTLAMIDAGIPMRDY-------------VCACSATFIEGSALMDLNHM 174
Query: 181 EDSTIDVDANFVM-TDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
E+ + D + G ++ + ++ Q+ F ++L++A + L ++ +
Sbjct: 175 EERSGGADLLLSIHPQLGGVISINMESK---VPQEMFESVLDMALAGCKKIYYLLQEQVK 231
Query: 240 NE 241
Sbjct: 232 KH 233
>gi|133919188|emb|CAL29642.1| polyribonucleotide nucleotidyltransferase [Bradyrhizobium elkanii]
Length = 180
Score = 107 bits (266), Expect = 2e-21, Method: Composition-based stats.
Identities = 35/167 (20%), Positives = 65/167 (38%), Gaps = 8/167 (4%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +R I V A GS L G+T + TL +E+ + T
Sbjct: 7 RIDGRDAKTVRNIIAEAGVLPRAHGSALFTRGETQAMVVTTLGTGEDEQYIDALSGTYKE 66
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + R+ G + RA+ V+ I + +
Sbjct: 67 TFLLHYNFPPYSVGETGRLGGTKRREIGHGKL----AWRAIHPVLPPHHEFPYTIRVVSE 122
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAI 164
+ +++G + A++ GA ++L D ++ + + +L+G A+
Sbjct: 123 ITESNGSSSMASVCGASLSLMDAGVPLKRPTAGIAMGLILEGQRFAV 169
>gi|224006464|ref|XP_002292192.1| hypothetical protein THAPSDRAFT_263495 [Thalassiosira pseudonana
CCMP1335]
gi|220971834|gb|EED90167.1| hypothetical protein THAPSDRAFT_263495 [Thalassiosira pseudonana
CCMP1335]
Length = 659
Score = 107 bits (266), Expect = 2e-21, Method: Composition-based stats.
Identities = 42/239 (17%), Positives = 83/239 (34%), Gaps = 15/239 (6%)
Query: 1 MRLSGRQENQMREISLTRRVSKY-AEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWI 59
+R GR N +R IS T + GS G+T ++ TA++ + +
Sbjct: 267 LRADGRGTNAVRPISATTPIFPDCVHGSSQFSRGETQVICTASIGAPSDGVPHASPYSDS 326
Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119
+A + R+ + +A+ V+ + + C+V
Sbjct: 327 SAFLHYDFPDFSTGTVKSKGESSANRRAIGHGNLAEKAVLPVLPNIHDFPYAVRLTCEVT 386
Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179
++G + AA G+ +AL D + + ++D+
Sbjct: 387 SSNGSSSMAAACGSTLALLDAGVPLVSPVAGVSVGL-----------TPDSKTLLLDITG 435
Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ-KDV 237
ED D+D T G ++ +Q + + + L+LAKD ++ K+V
Sbjct: 436 TEDHYGDMDFKVCGTS-GGVLSMQLDVK-NPVTMKVIASALSLAKDGRNAILAAMGKEV 492
Score = 36.4 bits (82), Expect = 3.3, Method: Composition-based stats.
Identities = 22/178 (12%), Positives = 52/178 (29%), Gaps = 16/178 (8%)
Query: 59 ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDV 118
Y + + +R SG R R+I R +R + + S + I
Sbjct: 6 YRERYHAAGKIPVHNRRRRDNSGPLTDREVLASRVIDRTIRPWLMMGLASSDKAISLPGN 65
Query: 119 IQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLD 178
I + ++ + + ++ + +
Sbjct: 66 IVVNCEVQSYDSRASSINGKKFPVPLKAAACVKLAI-----------QRDGSVVYDPSPN 114
Query: 179 YGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
ED+ ++ ++ ++ E S+ L LA++ I +I+ Q+
Sbjct: 115 ESEDAKFEL---LYAGTKDRVLMLEF--EDPGVSETTVANALMLAQEAILPIIEQQEQ 167
>gi|73974737|ref|XP_857538.1| PREDICTED: similar to Exosome complex exonuclease RRP41 (Ribosomal
RNA processing protein 41) (Exosome component 4) (p12A)
isoform 5 [Canis familiaris]
Length = 238
Score = 107 bits (266), Expect = 2e-21, Method: Composition-based stats.
Identities = 54/242 (22%), Positives = 90/242 (37%), Gaps = 26/242 (10%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R+ GR+ ++R+I V A+GS ++ G+T L + +
Sbjct: 13 RVDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVVYGPHEASGH-----RALVNC 67
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
+Y STG R +R + S E+ + + + + QI I V+QA
Sbjct: 68 QYSSATFSTGERKRRPHGDRK----SCEMGLHLRQTFEAAILTQLHPRSQIDIYVQVLQA 123
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
DGGT A + A +A+ D M D V A S G + + DL + E
Sbjct: 124 DGGTYAACVNAATLAVLDAGIPMRDF-------------VCACSAGFVDNTALADLSHVE 170
Query: 182 DSTIDVDANFV-MTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
++ + SG I ++ A +DH +L A D+ + V+
Sbjct: 171 EAAGGPQLALALLPASGQIALLEMDAR---LHEDHLEQVLEAAARAARDVHTVLDRVVRQ 227
Query: 241 EV 242
V
Sbjct: 228 HV 229
>gi|75045923|sp|Q7YRA3|EXOS4_BOVIN RecName: Full=Exosome complex component RRP41; AltName:
Full=Exosome component 4; AltName: Full=Ribosomal
RNA-processing protein 41
gi|33411774|emb|CAD58792.1| putative exosome complex exonuclease RRP41 [Bos taurus]
gi|296480766|gb|DAA22881.1| exosome complex exonuclease RRP41 [Bos taurus]
Length = 245
Score = 106 bits (265), Expect = 2e-21, Method: Composition-based stats.
Identities = 55/244 (22%), Positives = 92/244 (37%), Gaps = 23/244 (9%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVP--MWIRNTKHGWI 59
R+ GR+ ++R+I V A+GS ++ G+T L ++ +
Sbjct: 13 RVDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVVYGPHEIRGSRARALPDRALV 72
Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119
+Y STG R +R + S E+ + + + + QI I V+
Sbjct: 73 NCQYSSATFSTGERKRRPHGDRK----SCEMGLQLRQTFEAAILTQLHPRSQIDIYVQVL 128
Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179
QADGGT A + A +A+ D M D V A S G + G + DL +
Sbjct: 129 QADGGTYAACVNAATLAVLDAGIPMRDF-------------VCACSAGFVDGTALADLSH 175
Query: 180 GEDSTIDVDANFV-MTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
E++ + SG I ++ A +DH +L A D+ + V+
Sbjct: 176 VEEAAGGPQLALALLPASGQIALLEMDAR---LHEDHLEQVLEAAARASRDVHTVLDRVV 232
Query: 239 SNEV 242
V
Sbjct: 233 RQHV 236
>gi|328777661|ref|XP_003249381.1| PREDICTED: exosome complex exonuclease RRP41-like isoform 1 [Apis
mellifera]
Length = 284
Score = 106 bits (265), Expect = 2e-21, Method: Composition-based stats.
Identities = 46/249 (18%), Positives = 92/249 (36%), Gaps = 13/249 (5%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+RL GR+ ++R+I + V A+GS ++ G+T +L T + +
Sbjct: 29 LRLDGRRALELRQIRIKMGVFGQADGSAYIEHGNTKILVTVYGPHQPRNSTGRSTSKITK 88
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRS--QEIQRMIGRALRSVVDLSALGSRQIIIDCDV 118
+ + G QE + A+ +++ L QI I +
Sbjct: 89 GIVNCQYSMAVFSLSSGERKRKPRGDRKSQERSLQLKHAMEAIIHLELYPRSQIDIYVEA 148
Query: 119 IQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLD 178
+Q DG A++ A +AL D +++ + ++ + + + G ++D +
Sbjct: 149 LQVDGSEYCASVNAATLALIDAGIPIKNYAIGCTVTLINCPSLEDEDNTLEKG--VLDAN 206
Query: 179 YGEDSTIDVDANFV-------MTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231
Y E+ V + V ++ G IV QG+ +R SQ L D+
Sbjct: 207 YVEECAPGVTLSVVALPNSDGISKDGLIVVAQGAGQRLHLSQFESLKARVLC--GCQDIK 264
Query: 232 KLQKDVISN 240
+ +
Sbjct: 265 TILDHAVRQ 273
>gi|282165296|ref|YP_003357681.1| probable exosome complex exonuclease 2 [Methanocella paludicola
SANAE]
gi|282157610|dbj|BAI62698.1| probable exosome complex exonuclease 2 [Methanocella paludicola
SANAE]
Length = 259
Score = 106 bits (265), Expect = 2e-21, Method: Composition-based stats.
Identities = 45/244 (18%), Positives = 91/244 (37%), Gaps = 15/244 (6%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R GR+ ++ R +++ V AEGS V GD+ ++ ++ P ++ G I
Sbjct: 23 RADGRKFDEFRPVTIKVGVIGKAEGSSDVMIGDSRVVVGVKIQPGEP-FMDTPDKGVIIT 81
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRA--------LRSVVDLSALGSRQII 113
++P ++ +G + E+ R++ R L + S +
Sbjct: 82 NLELVPLASPTF-----ETGPPREDAIELARVVDRGVRESEAIDLSKLCIESGQKVWMVF 136
Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP 173
ID V+ DG AA GA AL L+ ++ +
Sbjct: 137 IDVHVLDHDGNLMDAASMGAIAALMSAKIPNAKFGLGEDAKLPLEDVPVGVTAVKIGSSI 196
Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
I+D E++ + G + +Q S T + D ++++AK++ L +
Sbjct: 197 ILDPSLDEENVASCKLTVITNKEGALAGMQKSG-VGTLTPDEVKYIVHIAKEKANVLRQK 255
Query: 234 QKDV 237
+++
Sbjct: 256 LEEI 259
>gi|332157778|ref|YP_004423057.1| exosome complex RNA-binding protein Rrp42 [Pyrococcus sp. NA2]
gi|331033241|gb|AEC51053.1| exosome complex RNA-binding protein Rrp42 [Pyrococcus sp. NA2]
Length = 274
Score = 106 bits (265), Expect = 2e-21, Method: Composition-based stats.
Identities = 47/249 (18%), Positives = 89/249 (35%), Gaps = 13/249 (5%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R+ R R IS+ + + AEGS LVK G+T +L P + G +T
Sbjct: 24 RIDDRGFEDYRPISIEVGIIEKAEGSALVKIGNTQVLVGIKTTLGEP-FPDTPNMGVMTT 82
Query: 62 EYGMLPRSTGNRVK-REAVSGRQGGRSQEIQRMIGRALRSVVDLSALGS--RQIIIDCDV 118
++P ++ + R + RAL + G R + ID V
Sbjct: 83 NVELVPLASPTFEPGPPDERAIELARVIDRGIRESRALNLEKMVIVPGKIVRVVFIDVHV 142
Query: 119 IQADGGTRTAAITGAWVALHDCLQHMEDCSN--------KFQLSQVLKGHVAAISCGMLC 170
+ DG A A AL + + + + ++ ++ +
Sbjct: 143 LDHDGNLMDAIGIAAIAALLNARVPKVRYNEETGEVEVLEEKEPLPVEKIPVPVTFAKIG 202
Query: 171 GYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADL 230
+VD E+ ++ ++GHI VQ S E F + +++A + ++
Sbjct: 203 NILVVDPSLDEELVMEGRLTITTDETGHISAVQKS-EGGAFKLEEVMYAVDVAFKKAEEI 261
Query: 231 IKLQKDVIS 239
K+ + +
Sbjct: 262 RKMIIEAVK 270
>gi|118151420|ref|NP_001071554.1| exosome complex component RRP41 [Bos taurus]
gi|81673708|gb|AAI09820.1| Exosome component 4 [Bos taurus]
Length = 245
Score = 106 bits (264), Expect = 3e-21, Method: Composition-based stats.
Identities = 55/244 (22%), Positives = 92/244 (37%), Gaps = 23/244 (9%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVP--MWIRNTKHGWI 59
R+ GR+ ++R+I V A+GS ++ G+T L ++ +
Sbjct: 13 RVDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVVYGPHEIRGSRARALPDRPLV 72
Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119
+Y STG R +R + S E+ + + + + QI I V+
Sbjct: 73 NCQYSSATFSTGERKRRPHGDRK----SCEMGLQLRQTFEAAILTQLHPRSQIDIYVQVL 128
Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179
QADGGT A + A +A+ D M D V A S G + G + DL +
Sbjct: 129 QADGGTYAACVNAATLAVLDAGIPMRDF-------------VCACSAGFVDGTALADLSH 175
Query: 180 GEDSTIDVDANFV-MTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
E++ + SG I ++ A +DH +L A D+ + V+
Sbjct: 176 VEEAAGGPQLALALLPASGQIALLEMDAR---LHEDHLEQVLEAAARASRDVHTVLDRVV 232
Query: 239 SNEV 242
V
Sbjct: 233 RQHV 236
>gi|329766295|ref|ZP_08257842.1| exosome complex RNA-binding protein Rrp42 [Candidatus
Nitrosoarchaeum limnia SFB1]
gi|329137197|gb|EGG41486.1| exosome complex RNA-binding protein Rrp42 [Candidatus
Nitrosoarchaeum limnia SFB1]
Length = 271
Score = 106 bits (263), Expect = 4e-21, Method: Composition-based stats.
Identities = 37/248 (14%), Positives = 82/248 (33%), Gaps = 16/248 (6%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R+ GR ++ R++ + A GS V+ GD+ ++ ++ P + G
Sbjct: 24 RVDGRALDEPRQLVIEVNAIPKANGSARVRLGDSEVVCGVKIQPDRP-FPDMGDKGIFIC 82
Query: 62 EYGMLPRSTGNRV------------KREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGS 109
+LP S + + R+ Q +I + V +
Sbjct: 83 TAELLPLSHPSVETGPPGPDVIELARVVDRGIRESHMIDLSQLVIEK--NKSVVGVFADN 140
Query: 110 RQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML 169
+ D ++ A TAA+ + + + + + +++ G +
Sbjct: 141 VVVDYDGNLFDACAYAATAALLSSKSPKWEMQNDVPTLVEGGESEVPITTIPVSVTMGKI 200
Query: 170 CGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIAD 229
+ IVD + E ++D +G+I +Q FS + L+ +
Sbjct: 201 GNHIIVDPNGDEWDSMDARITITTDSNGNICALQKGG-IGGFSFEEVIKCGELSVKVGSK 259
Query: 230 LIKLQKDV 237
+ + K
Sbjct: 260 IREKLKQA 267
>gi|145592135|ref|YP_001154137.1| exosome complex RNA-binding protein Rrp42 [Pyrobaculum arsenaticum
DSM 13514]
gi|145283903|gb|ABP51485.1| ribosomal RNA-processing protein RRP42 [Pyrobaculum arsenaticum DSM
13514]
Length = 276
Score = 106 bits (263), Expect = 4e-21, Method: Composition-based stats.
Identities = 56/256 (21%), Positives = 98/256 (38%), Gaps = 26/256 (10%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R+ GR +Q REI + V K A+GS VK G TH++ + P + G +
Sbjct: 29 RVDGRALDQTREIEIKTGVVKTADGSAEVKLGKTHVIAGVKVGLGQP-FPDAPDEGVLVV 87
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGS-------RQIII 114
+LP ++ G + E+ R++ R +R + + +
Sbjct: 88 SAEVLPHASP-----YTEVGPPDESAIELARVVDRGIRHCGYVDFKKLAVEGGKAYVLWV 142
Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHME----------DCSNKFQLSQVLKGHVAAI 164
D VI DG AA + AL + D +NK L A+
Sbjct: 143 DLYVINDDGNLVDAANLASVAALKNTQLPAVVKDESGAVKLDRNNKSPLPLETSKVPVAV 202
Query: 165 SCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAK 224
S G + +D ++ E+ ++D F +++ IV Q + F+Q A L+LA
Sbjct: 203 SVGKIANVLFLDPNFEEELSLDGRVTFTISED-RIVAAQKT--LGYFTQPELEAALDLAI 259
Query: 225 DRIADLIKLQKDVISN 240
++ K ++ +
Sbjct: 260 KGRDRYLEALKSILGS 275
>gi|149430580|ref|XP_001515504.1| PREDICTED: similar to Chain C, Structure Of The Human Rna Exosome
Composed Of Rrp41, Rrp45, Rrp46, Rrp43, Mtr3, Rrp42,
Csl4, Rrp4, And Rrp40 [Ornithorhynchus anatinus]
Length = 245
Score = 106 bits (263), Expect = 4e-21, Method: Composition-based stats.
Identities = 51/244 (20%), Positives = 89/244 (36%), Gaps = 23/244 (9%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVP--MWIRNTKHGWI 59
R+ GR+ ++R+I V A+GS ++ G+T L ++ +
Sbjct: 13 RVDGRRAGELRKIEARMGVFAQADGSAYIEQGNTKALAVVYGPHEMRGLRSRALPDRALV 72
Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119
++ M STG R +R + + + + + + QI I ++
Sbjct: 73 NCQFSMATFSTGERKRRPHGDRKATE----MSQHLQQTFEDAILTQLYPRSQIDIYVQIL 128
Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179
QADGG A + A +A+ D + D V A S G + P+ DL Y
Sbjct: 129 QADGGNYAACVNAATLAVLDAGIPLRDF-------------VCASSAGFVEDTPLADLSY 175
Query: 180 GEDSTIDVDANFV-MTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
E++ + SG I + A +DH +L A D+ + V+
Sbjct: 176 VEEAAGGPQVALALLPGSGQITLLGLDAR---VHEDHLERVLEAATAAARDVHTVLDRVV 232
Query: 239 SNEV 242
V
Sbjct: 233 RRHV 236
>gi|212223176|ref|YP_002306412.1| exosome complex RNA-binding protein Rrp42 [Thermococcus onnurineus
NA1]
gi|226740342|sp|B6YSE7|ECX2_THEON RecName: Full=Probable exosome complex exonuclease 2
gi|212008133|gb|ACJ15515.1| 3'-5' exoribonuclease [Thermococcus onnurineus NA1]
Length = 272
Score = 106 bits (263), Expect = 4e-21, Method: Composition-based stats.
Identities = 51/256 (19%), Positives = 97/256 (37%), Gaps = 23/256 (8%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R+ GR R++ + V + AEGS VK G+T +L ++ P + + G IT
Sbjct: 24 RVDGRSLEDYRDLEIKINVIEKAEGSAWVKLGNTQVLVGIKVDMGEP-FPDLPEKGVITT 82
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALG--------SRQII 113
++P ++ + R+ E+ R++ R +R + R +
Sbjct: 83 NVELVPLASPSFEPGP-----PDERAIELARVVDRGIRESGAVELEKLVIVPGKLVRVVF 137
Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNK--------FQLSQVLKGHVAAIS 165
ID V+ DG A+ GA AL + + ++
Sbjct: 138 IDVHVLDHDGNLLDASGIGAIAALMSAKMPKVVYDEESGEVQILDEYEPLPVSKMPIPVT 197
Query: 166 CGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKD 225
+ G +VD + E+ +D ++G I VQ S E +F + ++LA
Sbjct: 198 IAKVGGNLLVDPNLDEELVMDGRITITTDENGMISSVQKS-EGGSFKLEEVMYAIDLALT 256
Query: 226 RIADLIKLQKDVISNE 241
+ A++ + + + E
Sbjct: 257 KAAEIREKVLEAVGAE 272
>gi|296243059|ref|YP_003650546.1| ribosomal RNA-processing protein RRP42 [Thermosphaera aggregans DSM
11486]
gi|296095643|gb|ADG91594.1| ribosomal RNA-processing protein RRP42 [Thermosphaera aggregans DSM
11486]
Length = 289
Score = 105 bits (261), Expect = 6e-21, Method: Composition-based stats.
Identities = 45/256 (17%), Positives = 91/256 (35%), Gaps = 24/256 (9%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R+ GR R I++ + A+GS V G T ++T +E P + G +
Sbjct: 28 RIDGRGLLDYRPINVYLNPIEKADGSSHVILGTTQVITGVKIELGEP-FADRPDEGVLQV 86
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSA--------LGSRQII 113
+P ++ G S E+ R++ R+LR + +
Sbjct: 87 HAEFVPLASQTFEP-----GPPDENSIEVARVVDRSLREPKAIDFKQLVVAPGKKVWVVF 141
Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCS---------NKFQLSQVLKGHVAAI 164
D +I G A++ + +AL + + + VA +
Sbjct: 142 NDIYLIDHGGNIMDASMLSSMLALATAKIPYYEEKEPGVYVVDNKRHTSPLPVNTLVATV 201
Query: 165 SCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAK 224
+ G+ IVD E+ ++ + + G + +Q A S+ + +A
Sbjct: 202 TMGIHEDVIIVDPSIEEEVVLNTFLTIAVDEKGRVCGIQKKG-IAGLSKKMLDQAVEIAL 260
Query: 225 DRIADLIKLQKDVISN 240
++ LI L + +++N
Sbjct: 261 NKGGFLIDLIRKILNN 276
>gi|325959905|ref|YP_004291371.1| 3' exoribonuclease [Methanobacterium sp. AL-21]
gi|325331337|gb|ADZ10399.1| 3' exoribonuclease [Methanobacterium sp. AL-21]
Length = 263
Score = 105 bits (261), Expect = 6e-21, Method: Composition-based stats.
Identities = 52/245 (21%), Positives = 91/245 (37%), Gaps = 16/245 (6%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R GR ++ REISL V + AEGS VK G+T ++ A + P + G +
Sbjct: 22 RTDGRAFDEYREISLEAGVIEKAEGSARVKIGNTQIIIGAKPQIGTP-FGDTPNVGVLMT 80
Query: 62 EYGMLPRSTGNRVKREAVSG-----RQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
+LP + N R R ++ +V + I +D
Sbjct: 81 NTELLPMAAPNFESGPPDENSVELSRVTDRCIREGEVVDLEKLCIVPGEKV--WMIFLDL 138
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKF-------QLSQVLKGHVAAISCGML 169
V+ DG AA+ G+ AL + + + + + +
Sbjct: 139 HVVDYDGNLMDAAVLGSVAALMNTRLPEAKIIDDEVVLDYDNLIPLPINDTALMSTFAKI 198
Query: 170 CGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIAD 229
I+D E+ + + +T G+I +Q E T +Q+ +++AK + A+
Sbjct: 199 GEELIIDPSLEEEEVMGARLSIGITKDGNICAMQKGGE-KTLTQEEVLKAVSIAKIKTAE 257
Query: 230 LIKLQ 234
L KL
Sbjct: 258 LRKLL 262
>gi|170292235|pdb|2PNZ|B Chain B, Crystal Structure Of The P. Abyssi Exosome Rnase Ph Ring
Complexed With Udp And Gmp
gi|170292237|pdb|2PO0|B Chain B, Crystal Structure Of The P. Abyssi Exosome Rnase Ph Ring
Complexed With Adp In Double Conformation
gi|170292240|pdb|2PO1|B Chain B, Crystal Structure Of The P. Abyssi Exosome Rnase Ph Ring
Complexed With A Single Stranded 10-Mer Poly(A) Rna
gi|170292242|pdb|2PO2|B Chain B, Crystal Structure Of The P. Abyssi Exosome Rnase Ph Ring
Complexed With Cdp
Length = 277
Score = 105 bits (261), Expect = 6e-21, Method: Composition-based stats.
Identities = 50/255 (19%), Positives = 87/255 (34%), Gaps = 23/255 (9%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R+ R R I + V + AEGS LVK G T +L P + G +T
Sbjct: 27 RIDDRGFEDYRPIEIEVGVIEKAEGSALVKLGSTQVLVGIKTSLGEP-FPDTPNMGVMTT 85
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQ--------II 113
++P ++ R+ E+ R+I R +R L+ +
Sbjct: 86 NVELVPLASPTFEPGP-----PDERAIELARVIDRGIRESKALNLEKMVIVPGKIVRVVF 140
Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNK--------FQLSQVLKGHVAAIS 165
ID V+ DG A A AL + + + ++ ++
Sbjct: 141 IDVHVLDHDGNLMDAIGIAAIAALLNARVPKVRYNEETGEVETLDETEPLPVEKIPVPVT 200
Query: 166 CGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKD 225
+ +VD E+ +D ++GHI VQ S E F + + A
Sbjct: 201 FAKIGNILVVDPSLDEELVMDGKITITTDETGHISAVQKS-EGGAFKLEEVMYAVETAFK 259
Query: 226 RIADLIKLQKDVISN 240
+ ++ KL + +
Sbjct: 260 KAEEIRKLILEAVEK 274
>gi|57641568|ref|YP_184046.1| exosome complex RNA-binding protein Rrp42 [Thermococcus
kodakarensis KOD1]
gi|73919277|sp|Q5JIR7|ECX2_PYRKO RecName: Full=Probable exosome complex exonuclease 2
gi|57159892|dbj|BAD85822.1| exosome subunit Rrp42p homolog, 3'-5' exoribonuclease [Thermococcus
kodakarensis KOD1]
Length = 272
Score = 105 bits (261), Expect = 6e-21, Method: Composition-based stats.
Identities = 48/255 (18%), Positives = 87/255 (34%), Gaps = 23/255 (9%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R+ GR R++ + V + AEGS V+ GDT +L E P + G IT
Sbjct: 24 RIDGRSFEDYRDLEIKVNVIEKAEGSAWVRLGDTQVLVGIKAELGEP-FPDLPDRGVITT 82
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALG--------SRQII 113
++P ++ G + E+ R++ R +R + R I
Sbjct: 83 NVELVPLASPTFEP-----GPPDENAIELARVVDRGIRESQAVDLEKLVIVPGKLVRVIF 137
Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNK--------FQLSQVLKGHVAAIS 165
ID V+ G A+ GA AL + + + + ++
Sbjct: 138 IDVHVLDHGGNLLDASGIGAIAALLSTKLPKVNYNEETGEVEILDEYEPLPVNHVPIPVT 197
Query: 166 CGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKD 225
+ +VD E+ +D ++GHI Q E F + L +A
Sbjct: 198 FAKIGNSIVVDPSLDEERVMDGRLTITTDETGHISAAQK-GEAGAFKMEEVMYALEVALK 256
Query: 226 RIADLIKLQKDVISN 240
+ ++ + +
Sbjct: 257 KGNEIREKVLKAVGR 271
>gi|14520827|ref|NP_126302.1| exosome complex RNA-binding protein Rrp42 [Pyrococcus abyssi GE5]
gi|29337009|sp|Q9V118|ECX2_PYRAB RecName: Full=Probable exosome complex exonuclease 2
gi|5458043|emb|CAB49533.1| RNAse PH-related exoribonuclease [Pyrococcus abyssi GE5]
Length = 274
Score = 105 bits (261), Expect = 6e-21, Method: Composition-based stats.
Identities = 50/255 (19%), Positives = 87/255 (34%), Gaps = 23/255 (9%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R+ R R I + V + AEGS LVK G T +L P + G +T
Sbjct: 24 RIDDRGFEDYRPIEIEVGVIEKAEGSALVKLGSTQVLVGIKTSLGEP-FPDTPNMGVMTT 82
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQ--------II 113
++P ++ R+ E+ R+I R +R L+ +
Sbjct: 83 NVELVPLASPTFEPGP-----PDERAIELARVIDRGIRESKALNLEKMVIVPGKIVRVVF 137
Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNK--------FQLSQVLKGHVAAIS 165
ID V+ DG A A AL + + + ++ ++
Sbjct: 138 IDVHVLDHDGNLMDAIGIAAIAALLNARVPKVRYNEETGEVETLDETEPLPVEKIPVPVT 197
Query: 166 CGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKD 225
+ +VD E+ +D ++GHI VQ S E F + + A
Sbjct: 198 FAKIGNILVVDPSLDEELVMDGKITITTDETGHISAVQKS-EGGAFKLEEVMYAVETAFK 256
Query: 226 RIADLIKLQKDVISN 240
+ ++ KL + +
Sbjct: 257 KAEEIRKLILEAVEK 271
>gi|156937004|ref|YP_001434800.1| exosome complex RNA-binding protein Rrp42 [Ignicoccus hospitalis
KIN4/I]
gi|156565988|gb|ABU81393.1| ribosomal RNA-processing protein RRP42 [Ignicoccus hospitalis
KIN4/I]
Length = 276
Score = 105 bits (261), Expect = 7e-21, Method: Composition-based stats.
Identities = 54/255 (21%), Positives = 96/255 (37%), Gaps = 23/255 (9%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R+ R+ +Q R I +T V A GS LV+ G+T +L +E P + G +
Sbjct: 28 RIDKRRLDQYRPIKITLGVGGKAHGSALVEIGNTKVLAGVKVEVGKP-FKDVPDAGVLNV 86
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQI--------I 113
+LP ++ G + E+ R+I RALR + I
Sbjct: 87 NAELLPLASSEFEP-----GPPDENAIELARVIDRALREPGVIDLKELVLIPGEKVLVVW 141
Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHM--------EDCSNKFQLSQVLKGHVAAIS 165
+D V+ DG A++ + AL D + + + V +++
Sbjct: 142 LDVYVLDHDGNLFDASMLASMAALLDTRYPEYVVREDGSVEVDEANKRPLPIANKVVSVT 201
Query: 166 CGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKD 225
+L +VD E+ D F + G +V +Q S A D NLA
Sbjct: 202 LNVLENLFMVDPTLEEEVVADGKIVFAFDERGRLVGLQKSG-PAWLDLDKSTTAFNLAYS 260
Query: 226 RIADLIKLQKDVISN 240
+ +L+++ + ++
Sbjct: 261 KYKELLEVLEKSLAE 275
>gi|323191874|gb|EFZ77122.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Montevideo str. 609458-1]
Length = 499
Score = 104 bits (260), Expect = 7e-21, Method: Composition-based stats.
Identities = 34/178 (19%), Positives = 70/178 (39%), Gaps = 8/178 (4%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR+++ +R + + V GS L G+T L TATL + +V + +
Sbjct: 325 RIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVLDELMGERTD 384
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + R+ G + R + +V+ + + +
Sbjct: 385 SFLFHYNFPPYSVGETGMVGSPKRREIGHGRL----AKRGVLAVMPDMDKFPYTVRVVSE 440
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIV 175
+ +++G + A++ GA +AL D ++ + V +G + +L +
Sbjct: 441 ITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLSDILGDEDHL 498
Score = 96.5 bits (238), Expect = 3e-18, Method: Composition-based stats.
Identities = 38/232 (16%), Positives = 76/232 (32%), Gaps = 27/232 (11%)
Query: 14 ISLTRRV-SKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----HGWITAEYGMLPR 68
++L + ++ A + +V DT + T ++K + T G +P
Sbjct: 26 VTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVNYQERTYAAGRIPG 85
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
S R GR I R+I R +R + + Q+I +
Sbjct: 86 SFFRR------EGRPSEGETLIARLIDRPVRPLFPEGFVNEVQVIATVVSVNPQVNPDIV 139
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+ GA A G + A G + +++ E +D
Sbjct: 140 AMIGASAA-------------LSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLD 186
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
T++ ++ V+ AE S+D + ++ +I+ D++
Sbjct: 187 LVVAGTEA-AVLMVESEAEL--LSEDTMLGAVVFGHEQQQVVIQAINDLVKE 235
>gi|156398683|ref|XP_001638317.1| predicted protein [Nematostella vectensis]
gi|156225437|gb|EDO46254.1| predicted protein [Nematostella vectensis]
Length = 268
Score = 104 bits (260), Expect = 7e-21, Method: Composition-based stats.
Identities = 47/237 (19%), Positives = 89/237 (37%), Gaps = 18/237 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R GR+ +++R + L V A+GS ++ +T ++ + P + G +T
Sbjct: 36 RQDGRRPDELRPMFLRAGVVSQAKGSAYIEMKNTKVICAIYGPREAPRRQEFSMKGRLTC 95
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
E+ P S R K Q +E ++ +AL V L Q+ I V++
Sbjct: 96 EFKFAPFSCIYRRKHI-----QDAEEKENSYLVVQALEPAVCLEKFPKAQVDIYITVLEN 150
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
DG +A I A VAL M D V+A + + ++D E
Sbjct: 151 DGSALSAGIICASVALAMAGIEMLDL-------------VSACTMVQSDNHILMDPCEKE 197
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
+ + ++ + V G + +QD L+ + A ++ + + +
Sbjct: 198 IHSSSASGHTMVAILPSLNVVSGLVQEGELTQDAATKALSSCIEGCARILPIMQQAL 254
>gi|289607403|emb|CBI60808.1| unnamed protein product [Sordaria macrospora]
Length = 368
Score = 104 bits (260), Expect = 8e-21, Method: Composition-based stats.
Identities = 32/224 (14%), Positives = 69/224 (30%), Gaps = 27/224 (12%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT----KHGWITAEYGMLPR 68
++L V++ A+G+ + G+T +L T V + + G +P
Sbjct: 16 LTLETGRVARQADGAVIATLGETVVLCAVTAARSVKEGQDFFPLTVHYQEKYSAAGRIPG 75
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
R + + + R+I R +R + +I +
Sbjct: 76 GFFKRERGA------TEKETLVSRLIDRPIRPLFPEGFYNEINVIAQVLSYDGENEPDIV 129
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+ A A G + A G + G +++ + D+D
Sbjct: 130 AMIAASAA-------------LTISGVPFMGPIGAGRVGYIDGEYVLNPTLDQVKEGDLD 176
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
T ++ V+ A+ S++ + A D ++
Sbjct: 177 LVVAATGD-AVMMVESEAKE--LSEEVMLGAVVFAHDASKKIVD 217
Score = 83.4 bits (204), Expect = 3e-14, Method: Composition-based stats.
Identities = 17/71 (23%), Positives = 25/71 (35%), Gaps = 4/71 (5%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKHG 57
R+ GR +R I A GS L G+T + T TL E++ + +
Sbjct: 297 RIDGRDTKTVRPIEAMVHFLPRAHGSALFTRGETQAICTTTLGTKDAEQMIDGLNGLHYE 356
Query: 58 WITAEYGMLPR 68
Y P
Sbjct: 357 RFMLHYNFPPY 367
>gi|169829487|ref|YP_001699645.1| ribonuclease PH [Lysinibacillus sphaericus C3-41]
gi|168993975|gb|ACA41515.1| Ribonuclease PH [Lysinibacillus sphaericus C3-41]
Length = 196
Score = 104 bits (260), Expect = 9e-21, Method: Composition-based stats.
Identities = 87/189 (46%), Positives = 115/189 (60%), Gaps = 1/189 (0%)
Query: 53 NTKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQI 112
WITAEY MLPR+T R RE+ G+ GR+ EIQR+IGRALR+VVDL ALG R +
Sbjct: 2 GKGKDWITAEYSMLPRATAQRTPRESSRGKVNGRTMEIQRLIGRALRAVVDLEALGERTV 61
Query: 113 IIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY 172
IDCDVIQADGGTRTA+ITGA+VA+ + + F V A +
Sbjct: 62 WIDCDVIQADGGTRTASITGAFVAMTQAIAKFAEEKP-FVKFPVTDFLAATSVGIVEEQG 120
Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
++DL+Y ED VD N VMT +G VE+QG+ E ATFS++ +L L + I L++
Sbjct: 121 AVLDLNYVEDVAAAVDMNIVMTGAGRFVELQGTGEEATFSREELNELLALGEKGIQQLVE 180
Query: 233 LQKDVISNE 241
LQK ++ +
Sbjct: 181 LQKTALAEQ 189
>gi|307700019|ref|ZP_07637068.1| putative guanosine pentaphosphate synthetase I/polyribonucleotide
nucleotidyltransferase [Mobiluncus mulieris FB024-16]
gi|307614780|gb|EFN94000.1| putative guanosine pentaphosphate synthetase I/polyribonucleotide
nucleotidyltransferase [Mobiluncus mulieris FB024-16]
Length = 542
Score = 104 bits (259), Expect = 1e-20, Method: Composition-based stats.
Identities = 36/210 (17%), Positives = 72/210 (34%), Gaps = 13/210 (6%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +R ++ V GS L + G+T +L TL E+ + H
Sbjct: 342 RIDGRGCKDIRSLAAEVEVLPRVHGSALFQRGETQVLGVTTLNMLRMEQQLDNLSPITHK 401
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
+Y P TG + + R+ G AL V+ I +
Sbjct: 402 RYMHQYNFPPYCTGETGRVGSPKRREIGHGHL----AEMALVPVIPSREEFPYAIRQVSE 457
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
++ ++G + ++ + ++L + + + + + G + D+
Sbjct: 458 IMGSNGSSSMGSVCASTLSLLNAGVPLRAPIAGIAMGLMSEP----GEDGQTHFATLTDI 513
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAE 207
ED+ D+D T I +Q +
Sbjct: 514 LGAEDAFGDMDFKVAGTKEF-ITALQLDTK 542
Score = 87.2 bits (214), Expect = 2e-15, Method: Composition-based stats.
Identities = 38/245 (15%), Positives = 71/245 (28%), Gaps = 38/245 (15%)
Query: 12 REISLTRRV-SKYAEGSCLVKF-GDTHLLTTATLEEKVPMWIRNT----KHGWITAEYGM 65
R + + ++ A GS +V G+T + T+ ++ G
Sbjct: 21 RVLRFETGLLARQAAGSAMVTLDGETVVFAATTVGKQPKDQFDFFPLTVDVEEKQYAAGR 80
Query: 66 LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125
+P S R GR G S R+I R LR Q++ I D
Sbjct: 81 IPGSFFRR------EGRPGTESILAARLIDRPLRPAFVKGLRNEVQVVDTVMAIHPDEAY 134
Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185
AI + ++ G + ++ G + Y +
Sbjct: 135 DVVAINASSMSTQLAG-------------LPFSGPIGGTRLSLIDGQWVAFPTYPQMEQA 181
Query: 186 DVDANFVM---TDSGHIVEVQGSAERATF----------SQDHFFAMLNLAKDRIADLIK 232
+ + I+ V+ + +++ L AK I +L +
Sbjct: 182 TFNMVVAGRVVGEDVAIMMVEAGGGDNAWELIQAGQQAPTEEVVAGALEAAKPVIRELCR 241
Query: 233 LQKDV 237
Q +V
Sbjct: 242 AQSEV 246
>gi|297527571|ref|YP_003669595.1| 3' exoribonuclease [Staphylothermus hellenicus DSM 12710]
gi|297256487|gb|ADI32696.1| 3' exoribonuclease [Staphylothermus hellenicus DSM 12710]
Length = 285
Score = 104 bits (259), Expect = 1e-20, Method: Composition-based stats.
Identities = 50/256 (19%), Positives = 94/256 (36%), Gaps = 24/256 (9%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R+ GR+ ++ R I + AEGS VK G+T ++T LE P R G +
Sbjct: 28 RIDGRKLDEYRPIEVFLNPIPKAEGSAAVKLGNTFVITGVKLEIGTPYSDRP-NEGVLQV 86
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALG--------SRQII 113
+P ++ G + E R+I R+LR + I
Sbjct: 87 HAEFVPLASPTFEP-----GPPDENAIETARVIDRSLREPKAIRLEDLVVIPGKKVWLIF 141
Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHM---------EDCSNKFQLSQVLKGHVAAI 164
D +I G + +AL+ + L +V +
Sbjct: 142 NDLYLIDHYGNIIDTGMLSTMLALNMTKIPRIVSIEDENVVIDKTVKEAPLPLNLNVVTV 201
Query: 165 SCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAK 224
+ G++ IVD + E+ +D F + ++ IV +Q ++++A
Sbjct: 202 TLGIIDDIIIVDPNIDEELVVDSRITFAIDETNRIVGIQKMG-MKGIKPKMIDQLVDIAL 260
Query: 225 DRIADLIKLQKDVISN 240
+ ++L L ++V++N
Sbjct: 261 KKASELHGLLREVLNN 276
>gi|40217447|emb|CAE46380.1| 3'-5' exoribonuclease [uncultured archaeon]
gi|268323830|emb|CBH37418.1| 3'-5' exoribonuclase [uncultured archaeon]
Length = 260
Score = 104 bits (259), Expect = 1e-20, Method: Composition-based stats.
Identities = 50/240 (20%), Positives = 91/240 (37%), Gaps = 15/240 (6%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R GR R+I + R + K AEGS V+ GDT +L +E P + G +
Sbjct: 23 RADGRGFLDFRDIIVERDLIKKAEGSTRVQIGDTVVLVGVKVEPGEP-FPDTPNKGILMT 81
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRA--------LRSVVDLSALGSRQII 113
++P ++ SG G S E+ R++ R L + I
Sbjct: 82 NAELVPLASPEF-----ESGPPGENSIELARVVDRGIRGSETIDLEKLCIEEGEKVWMIF 136
Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP 173
ID + DG AA GA ++L + E + + ++ A++ + G
Sbjct: 137 IDIHTLDNDGNLVDAAALGAIMSLLNVAIPYEQYGLTGEDTLQIRDTPVAVTVVEIRGNL 196
Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
+VD + E+S + G I +Q S +++ M + ++ ++ +
Sbjct: 197 LVDPNVYEESAATSKLTVISNADGSISGLQKSG-SNGLTEEKIVKMTEIGIEKAREIREK 255
>gi|328784963|ref|XP_396984.3| PREDICTED: polyribonucleotide nucleotidyltransferase 1,
mitochondrial-like [Apis mellifera]
Length = 747
Score = 104 bits (259), Expect = 1e-20, Method: Composition-based stats.
Identities = 43/223 (19%), Positives = 76/223 (34%), Gaps = 16/223 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE--------EKVPMWIRN 53
R GR N++REIS + + GS + G T +L T TL+ + + M
Sbjct: 354 RCDGRGMNELREISCQVDLFQPLHGSAFFQRGQTQVLCTVTLDSIESSLKLDTISMLSSG 413
Query: 54 TKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQII 113
K Y P + K + R+ G + L++V+ + I
Sbjct: 414 IKEKNFFLHYEFPPYAINETGKLTGIDRREIGHGAL----AEKGLQAVIPQNYPF--AIR 467
Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP 173
+ +V++++G + A+I G +AL + + + V A
Sbjct: 468 LTSEVLESNGSSSMASICGGSLALMNAGIPISSPVAGVAMGLVCNNTNTA-DLKETDYKI 526
Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHF 216
+ D+ ED D+D T G Q +
Sbjct: 527 LTDISGIEDHLGDMDFKIAGTKRG-FTAFQADIKVPGIPFKVI 568
Score = 80.3 bits (196), Expect = 2e-13, Method: Composition-based stats.
Identities = 42/233 (18%), Positives = 75/233 (32%), Gaps = 29/233 (12%)
Query: 13 EISLTRR-VSKYAEGSCLVKFGDTHLLTTAT---LEEKVPMWIRNTKHGWITAEYGMLPR 68
EI L+ +++ GS + GDT ++TT + + + A G +P
Sbjct: 52 EIKLSTGKYARFTSGSVIATVGDTSIMTTVVRNNVLSNNSIIPLTVNYRQKAAAIGRIPT 111
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
+ R + R+I R+LR + QI+ + I
Sbjct: 112 NFFRRELGY------TDNEILVSRIIDRSLRPLFQPKYSYETQIVCNLLAIDGINNPDVL 165
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
+I A A G VAA+ G++ I++ E ++
Sbjct: 166 SINAASAA-------------LSISDIPWNGPVAAVRIGLIDNTYIINPSKRELQQSKLN 212
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI----KLQKDV 237
IV ++GSA + + L +I +LQK +
Sbjct: 213 LVLSCISKNLIVMIEGSAND--ILEPELRKAIKLGIKECQTIINSISELQKQI 263
>gi|303286903|ref|XP_003062741.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226456258|gb|EEH53560.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 846
Score = 104 bits (258), Expect = 1e-20, Method: Composition-based stats.
Identities = 35/240 (14%), Positives = 79/240 (32%), Gaps = 18/240 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+R+ GR+ ++R ++ GS + + G+T L T T+ + G
Sbjct: 395 VRVDGRKLTELRSLAAEVGAIPVVHGSSVFERGNTQALATVTIGSVDDFQRLDAPVGPKN 454
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
++ + + G R + ++L ++ + ++ + ++
Sbjct: 455 KKFMLHYAFPSFSINETPRRGGLSRREIGHGALAEKSLAGMIPDDDAYPFAVRVNAETLE 514
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
++G + AA+ +AL D + + + V+ + + D+
Sbjct: 515 SNGSSSMAAVCAGSLALMDAGVPIAEHVGAISVGLVMDEDEDG---NVTRHALLSDIMGL 571
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
ED D+D T G I +Q L+ A +I I+
Sbjct: 572 EDVLGDMDFKIAGTR-GGITGIQAP--------------LDEASVARNQVIDEMYAAIAR 616
Score = 79.5 bits (194), Expect = 4e-13, Method: Composition-based stats.
Identities = 38/235 (16%), Positives = 77/235 (32%), Gaps = 25/235 (10%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPM----WIRNTKHGWITAEYGMLPR 68
I+ +++ A+G+ + GD ++ A + + N ++ + YG +P
Sbjct: 88 IAFETGRLARLADGAVMASMGDNRVMCAAVAAREPDPNAGFFPLNVEYRERASAYGKIPS 147
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
+ R G R R++ RA+R + + +
Sbjct: 148 TFTRR------EGAPKDREVLAMRVVDRAIRPLFPKAFRNDTSVQAIVLASDRSLDPSVL 201
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+ GA ALH +++ V G V + D + + +
Sbjct: 202 AVNGASAALHASSIPWNGPVGAVRVAVVNDGEVIVT-----------NPDDATRAESEFE 250
Query: 189 ANFVMTDSGHIVEVQGSA-ERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNEV 242
+ T+ + ++ SA +R + L A D LI Q+ + V
Sbjct: 251 LLYAGTEDRAL-MIEASATKRGGVPEAVVAKALRAAHDAAKLLIAPQRR-LRERV 303
>gi|52550027|gb|AAU83876.1| 3'-5' exoribonuclease [uncultured archaeon GZfos34H10]
Length = 260
Score = 104 bits (258), Expect = 2e-20, Method: Composition-based stats.
Identities = 47/240 (19%), Positives = 89/240 (37%), Gaps = 15/240 (6%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R GR R+I + R + K A+GS V+ GDT +L +E P + G +
Sbjct: 23 RADGRGFLDFRDIIVERDLIKKADGSTRVQIGDTVVLVGVKVEPGEP-FSDTPNKGILMT 81
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRA--------LRSVVDLSALGSRQII 113
++P ++ SG S E+ R++ R L + +
Sbjct: 82 NAELVPLASPEF-----ESGPPNENSIELARVVDRGIRGSETIDLEKLCIEEGEKVWMLF 136
Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP 173
ID + DG AA GA +L + E + + ++ A++ + G
Sbjct: 137 IDIHTLDNDGNLVDAAALGAITSLLNVAIPYEQYGLTGEDTLQIRDTPVAVTVVEIGGNL 196
Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
+VD + E+S + G I +Q S +++ M + ++ ++ +
Sbjct: 197 LVDPNVYEESAATSKLTVISNADGSISGLQKSG-SNGLTEEKIVKMAEIGIEKAREIREK 255
>gi|294668514|ref|ZP_06733611.1| tRNA nucleotidyltransferase [Neisseria elongata subsp. glycolytica
ATCC 29315]
gi|291309477|gb|EFE50720.1| tRNA nucleotidyltransferase [Neisseria elongata subsp. glycolytica
ATCC 29315]
Length = 157
Score = 103 bits (257), Expect = 2e-20, Method: Composition-based stats.
Identities = 74/139 (53%), Positives = 108/139 (77%)
Query: 6 RQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGM 65
R + +R + +T +A+GS L++ G+T ++ TA+++E VP ++R GW+TAEYGM
Sbjct: 9 RAADALRAVKITPHFLPHADGSVLIECGNTKVICTASIDESVPPFLRGKGQGWVTAEYGM 68
Query: 66 LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125
LP ST R++REA +G+QGGR+QEIQR+IGR+LR+ VD++ LG RQI+IDCDVIQADGGT
Sbjct: 69 LPASTATRMRREAAAGKQGGRTQEIQRLIGRSLRAAVDMAKLGERQILIDCDVIQADGGT 128
Query: 126 RTAAITGAWVALHDCLQHM 144
RTA+I+GA+VAL +++
Sbjct: 129 RTASISGAYVALALAMKNC 147
>gi|6433781|emb|CAB60663.1| RnpH protein [Bradyrhizobium japonicum]
Length = 86
Score = 103 bits (257), Expect = 2e-20, Method: Composition-based stats.
Identities = 51/86 (59%), Positives = 67/86 (77%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR S R +++R ++L R V KYAEGSCLVKFGDTH+L TATLE+++P W++ GW+T
Sbjct: 1 MRPSRRAPDELRPVTLERGVVKYAEGSCLVKFGDTHVLVTATLEDRLPPWLKGQGRGWVT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGR 86
AEYGMLPR+T R +REA +G+Q GR
Sbjct: 61 AEYGMLPRATSERTRREASAGKQSGR 86
>gi|87311731|ref|ZP_01093846.1| polyribonucleotide nucleotidyltransferase [Blastopirellula marina
DSM 3645]
gi|87285515|gb|EAQ77434.1| polyribonucleotide nucleotidyltransferase [Blastopirellula marina
DSM 3645]
Length = 350
Score = 103 bits (257), Expect = 2e-20, Method: Composition-based stats.
Identities = 40/231 (17%), Positives = 75/231 (32%), Gaps = 26/231 (11%)
Query: 14 ISLTRRV-SKYAEGSCLVKFGDTHLL-TTATLE--EKVPMWIRNTKHGWITAEYGMLPRS 69
+S +K A G+CL ++GDT +L AT + + TA G P
Sbjct: 15 LSFETGYLAKQAAGACLTQYGDTVVLTAAATGPSRPGTDFFPLTCDYRERTAAAGKFPGG 74
Query: 70 TGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAA 129
R GR + R++ R +R + Q++ + A
Sbjct: 75 FIKR------EGRPTTKEILTCRLMDRPIRPMFPKGFRDEVQVMANVLSSDRQNDGDVLA 128
Query: 130 ITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDA 189
+ GA VA S G +AA+ + +V + E D+D
Sbjct: 129 MNGAAVA-------------LGLSSLPFDGPLAAVRLAHINDEFVVFPTHEELEESDLDL 175
Query: 190 NFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
++ ++G + +D + + I + +Q + +
Sbjct: 176 IISGNKE-SVLMIEGFSRE--MPEDIMLKAIETCHEYIKQICDMQLEFLEK 223
Score = 47.1 bits (110), Expect = 0.002, Method: Composition-based stats.
Identities = 9/28 (32%), Positives = 11/28 (39%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCL 29
R GR N +R I V GS +
Sbjct: 314 RPDGRDGNTLRAIECKVDVLPRVHGSAV 341
>gi|126459545|ref|YP_001055823.1| exosome complex RNA-binding protein Rrp42 [Pyrobaculum calidifontis
JCM 11548]
gi|126249266|gb|ABO08357.1| ribosomal RNA-processing protein RRP42 [Pyrobaculum calidifontis
JCM 11548]
Length = 274
Score = 103 bits (257), Expect = 2e-20, Method: Composition-based stats.
Identities = 54/254 (21%), Positives = 98/254 (38%), Gaps = 26/254 (10%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R+ GR+ +Q+R + + V K A+GS VK G TH++ + P + G +
Sbjct: 29 RIDGREVDQVRPVEVKTGVVKTADGSAEVKLGKTHVVAGVKIGLGQP-FPDAPDEGVLVV 87
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGS-------RQIII 114
+LP ++ G + E+ R++ R LR + + +
Sbjct: 88 NAEVLPHASP-----YTEVGPPDEFAIELARVVDRGLRHCGYVDFKKLSVEGGKAYVLWV 142
Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHME----------DCSNKFQLSQVLKGHVAAI 164
D VI DG AA A AL + D +++ + L+ A+
Sbjct: 143 DLYVINDDGNLVDAANLAAVAALKNAALPAVVKDETGAVKLDRNSRTPMPLDLEKAPIAV 202
Query: 165 SCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAK 224
S G + +D + E+ ++D + IV +Q + +F+Q A L+LA
Sbjct: 203 SVGKIANVLFLDPIFEEELSLDGRITYTFAQE-RIVAIQKT--LGSFTQQELEAALDLAW 259
Query: 225 DRIADLIKLQKDVI 238
+ K+V+
Sbjct: 260 RGRESYLASLKEVL 273
>gi|73993245|ref|XP_534492.2| PREDICTED: similar to Exosome complex exonuclease RRP43 (Ribosomal
RNA processing protein 43) (Exosome component 8) (p9)
(Opa-interacting protein 2) isoform 1 [Canis familiaris]
Length = 276
Score = 103 bits (256), Expect = 2e-20, Method: Composition-based stats.
Identities = 42/252 (16%), Positives = 77/252 (30%), Gaps = 15/252 (5%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R GR+ + R ++ A+GS LVK G+T ++ E P G++
Sbjct: 23 RPDGRELGEFRTTTVNIGSISTADGSALVKLGNTTVICGIKAEFAAPPT-DAPDKGYVVP 81
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGS---RQIIIDCDV 118
+ P + Q + + DL + D
Sbjct: 82 NVDLPPLCSSRFRSGPPGEEAQVASQFIADVIENSQIIQKEDLCISPGKLSWVLYCDIIC 141
Query: 119 IQADGGTRTAAITGAWVALHDCLQHME---------DCSNKFQLSQVLKGHVAAISCGML 169
+ DG A AL + + + K + ++ H A S +
Sbjct: 142 LDYDGNILDACTFALLAALKNAQLPEVTINEETGLAEVNLKKKSYLNIRTHPVATSFAVF 201
Query: 170 CGY-PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIA 228
IVD E+ VM + G + + + + ++ A R
Sbjct: 202 DDTLLIVDPTGEEEHLATGTLTVVMDEEGKLCCLHKPG-GSGLTGAKLQDCMSRAVTRHK 260
Query: 229 DLIKLQKDVISN 240
++ KL +VI +
Sbjct: 261 EVKKLMDEVIKS 272
>gi|302348935|ref|YP_003816573.1| Probable exosome complex exonuclease 2 [Acidilobus saccharovorans
345-15]
gi|302329347|gb|ADL19542.1| Probable exosome complex exonuclease 2 [Acidilobus saccharovorans
345-15]
Length = 280
Score = 103 bits (256), Expect = 2e-20, Method: Composition-based stats.
Identities = 50/256 (19%), Positives = 96/256 (37%), Gaps = 23/256 (8%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+R R R +S+ V A+GS VK G+T +L LE +P + G +
Sbjct: 27 VRSDQRDFATPRNLSIQVGVIDKADGSAWVKLGNTQVLVGVKLEVGIP-YRDTPNEGVLQ 85
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSA------LGS--RQI 112
+ P ++ G + E+ R+I R+LR + G +
Sbjct: 86 VNSELTPVASPTFEP-----GPPDENAVELSRVIDRSLRDPKAIDLSSLVIRPGEKAWVL 140
Query: 113 IIDCDVIQADGGTRTAAITGAWVALHDCLQH-MEDCSNKFQLSQVLKGHVAA-------I 164
ID V+ DG A++ G AL + E+ + + KG +
Sbjct: 141 WIDIYVLDYDGNYFDASMLGVMAALMNTKVPEYEETESGEIIINREKGTPLKLNRRVALV 200
Query: 165 SCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAK 224
+ + Y ++D + E+ D + G IV +Q S +++D ++++++
Sbjct: 201 TSVKVGDYILIDPNIDEELLADSRMVIAFDEQGTIVGMQKSG-MGGYTRDELLKVIDISR 259
Query: 225 DRIADLIKLQKDVISN 240
+ KL + +
Sbjct: 260 NASQVYFKLLDQALQS 275
>gi|18313177|ref|NP_559844.1| exosome complex RNA-binding protein Rrp42 [Pyrobaculum aerophilum
str. IM2]
gi|29336869|sp|Q8ZVN0|ECX2_PYRAE RecName: Full=Probable exosome complex exonuclease 2
gi|18160691|gb|AAL64026.1| 3' exoribonuclease family protein [Pyrobaculum aerophilum str. IM2]
Length = 274
Score = 103 bits (256), Expect = 2e-20, Method: Composition-based stats.
Identities = 56/255 (21%), Positives = 94/255 (36%), Gaps = 26/255 (10%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R+ GR Q R + + V K A+GS VK G TH++ + P + G +
Sbjct: 29 RVDGRGPEQTRNVEINVGVVKTADGSAEVKLGKTHVVAGVKVGLGQP-FPDAPDEGVLVV 87
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGS-------RQIII 114
+LP ++ G + E+ R++ R +R + + I
Sbjct: 88 NAEVLPHASP-----YTEVGPPDEFAIELARVVDRGIRHCGYVDFKKLAVEGGKAYVLWI 142
Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHME----------DCSNKFQLSQVLKGHVAAI 164
D VI DG A + AL + + D +NK L + A+
Sbjct: 143 DLYVINDDGNLIDVANLASVAALKNTQLPVVVKDEAGVVKLDRNNKAPLPVDISKAPIAV 202
Query: 165 SCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAK 224
S G + +D + E+ ++D F ++ IV Q + F+Q A LNLA
Sbjct: 203 SVGKIGNVLFLDPTFEEELSLDGRITFTFSED-KIVAAQKT--LGYFTQSEIEAALNLAL 259
Query: 225 DRIADLIKLQKDVIS 239
L++ K +
Sbjct: 260 RGRDRLLEALKSALK 274
>gi|156550959|ref|XP_001603897.1| PREDICTED: similar to ENSANGP00000009222 [Nasonia vitripennis]
Length = 270
Score = 103 bits (256), Expect = 3e-20, Method: Composition-based stats.
Identities = 39/250 (15%), Positives = 85/250 (34%), Gaps = 10/250 (4%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+R GR+ ++R I L V A+GS ++ G T +L T + +
Sbjct: 12 LRADGRRPLELRRIRLRMGVFGQADGSAYLEQGKTKILATVYGPHQPRGKANANALKAVK 71
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRS--QEIQRMIGRALRSVVDLSALGSRQIIIDCDV 118
+ + G QE + + A+ ++++L QI I +V
Sbjct: 72 GIVNCQYSTAVFSFGAGERKKKPRGDRKSQERSQQLRHAMEAIINLELFARSQIDIFVEV 131
Query: 119 IQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLS-----QVLKGHVAAISCGMLCGYP 173
+Q DG A+ A +AL D ++D + ++ + + +
Sbjct: 132 LQVDGSDFCVAVNAATLALIDAGIPIKDYAIGCSVTVSDNLLGDDDDSGQGTGILDANWI 191
Query: 174 IVDLDYGEDSTIDVDANFVMTDSG-HIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
S + + T++ ++ G+ +R S+ + A D+
Sbjct: 192 EECSPGVTLSVVALPKVVDETETKSSVILCHGAGQRLHLSR--LEPLRLRALQGCRDIRA 249
Query: 233 LQKDVISNEV 242
+ + + +
Sbjct: 250 ILDQAVKDHL 259
>gi|282897292|ref|ZP_06305294.1| Polyribonucleotide nucleotidyltransferase [Raphidiopsis brookii D9]
gi|281197944|gb|EFA72838.1| Polyribonucleotide nucleotidyltransferase [Raphidiopsis brookii D9]
Length = 259
Score = 102 bits (255), Expect = 3e-20, Method: Composition-based stats.
Identities = 50/235 (21%), Positives = 87/235 (37%), Gaps = 26/235 (11%)
Query: 10 QMREISLTRRV-SKYAEGSCLVKFGDTHLLTTAT---LEEKVPMWIRNTKHGWITAEYGM 65
R+I L + + A GS L++ GDT +L TAT E + + G
Sbjct: 11 DGRDIRLKVGLLAPQAGGSVLIESGDTAVLVTATRSEAREGIDFLPLTVDYEERLYAAGR 70
Query: 66 LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125
+P R GR R+ R+I R LR + Q+I +
Sbjct: 71 IPGGIMRR------EGRPPERAILTSRLIDRPLRPLFPSWLRDDLQVIALTLSMDELVPP 124
Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185
A+TGA +A +AA+ G++ I++ Y E
Sbjct: 125 DVLAVTGASIATLIAQIPFYG-------------PMAAVRVGLVGDDFIINPTYAEIEAG 171
Query: 186 DVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
D+D + G ++ V+ A + + ++ + + DLI+ Q+D+I+
Sbjct: 172 DLDLVVAGSPDG-VIMVEAGANQ--LPERDIIEAIDFGYEAVRDLIQAQRDLIAE 223
>gi|213850433|ref|ZP_03381331.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Typhi str. M223]
Length = 369
Score = 102 bits (255), Expect = 3e-20, Method: Composition-based stats.
Identities = 37/214 (17%), Positives = 77/214 (35%), Gaps = 18/214 (8%)
Query: 30 VKFGDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGMLPRSTGNRVKREAVSGRQGG 85
G+T L TATL + +V + + Y P S G + R+ G
Sbjct: 1 FTRGETQALVTATLGTARDAQVLDELMGERTDSFLFHYNFPPYSVGETGMVGSPKRREIG 60
Query: 86 RSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHME 145
+ R + +V+ + + ++ +++G + A++ GA +AL D ++
Sbjct: 61 HGRL----AKRGVLAVMPDMDKFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIK 116
Query: 146 DCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGS 205
+ V +G + + ED D+D + G I +Q
Sbjct: 117 AAVAGIAMGLVKEGDNYVVLSD---------ILGDEDHLGDMDFKVAGSRDG-ISALQMD 166
Query: 206 AERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
+ +++ LN AK ++ + + I+
Sbjct: 167 IKIEGITKEIMQVALNQAKGARLHILGVMEQAIN 200
>gi|48477465|ref|YP_023171.1| exosome complex RNA-binding protein Rrp42 [Picrophilus torridus DSM
9790]
gi|48430113|gb|AAT42978.1| ribonuclease PH [Picrophilus torridus DSM 9790]
Length = 260
Score = 102 bits (255), Expect = 3e-20, Method: Composition-based stats.
Identities = 44/238 (18%), Positives = 84/238 (35%), Gaps = 16/238 (6%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
RL GR N R+I + A GS +V+ G T ++ +EE P + G +
Sbjct: 26 RLDGRGLNDFRDIKIFENYIPKASGSAMVELGRTKVVAGVKIEEGEP-FPDTPDQGVMAL 84
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSA--------LGSRQII 113
MLP + +G G + E R++ R +R + +
Sbjct: 85 NIEMLPMAFPTF-----EAGPPGEEAIEYSRVVDRGIRESKMIDVTRLVIEPGTKVWMVF 139
Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP 173
ID D+I G A+ A AL + + + + +++ +
Sbjct: 140 IDIDIINYAGNIIDASTIAAVAALRNAIVPASRIG-GEDFKLPVNANPVSVTMAKIGDEL 198
Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231
++D D E+ + M + HI +Q + F+ + + ++D +
Sbjct: 199 VIDPDLEEEQVSNGRITITMAEDDHIHAIQK-GDVGEFTMEDIRKAIKASRDTGNRIR 255
>gi|332242319|ref|XP_003270334.1| PREDICTED: exosome complex exonuclease RRP43-like [Nomascus
leucogenys]
Length = 276
Score = 102 bits (254), Expect = 4e-20, Method: Composition-based stats.
Identities = 43/252 (17%), Positives = 77/252 (30%), Gaps = 15/252 (5%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R GR+ + R ++ A+GS LVK G+T ++ E P G+I
Sbjct: 23 RPDGRELGEFRTTTVNIGSISTADGSALVKLGNTTVICGVKAEFAAPPT-DAPDKGYIVP 81
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGS---RQIIIDCDV 118
+ P + Q + + DL + D
Sbjct: 82 NVDLPPLCSSRFRSGPPGEEAQVASQFIADVIENSQIIQKEDLCISPGKLAWVLYCDLIC 141
Query: 119 IQADGGTRTAAITGAWVALHDCLQHME---------DCSNKFQLSQVLKGHVAAISCGML 169
+ DG A AL + + + K + ++ H A S +
Sbjct: 142 LDYDGNILDACTFALLAALKNVQLPEVTINEETALAEVNLKKKSYLNIRTHPVATSFAVF 201
Query: 170 CGY-PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIA 228
IVD E+ VM + G + + + + ++ A R
Sbjct: 202 DDTLLIVDPTGEEEHLATGTLTVVMDEEGKLCCLHKPG-GSGLTGAKLQDCMSRAVTRHK 260
Query: 229 DLIKLQKDVISN 240
++ KL +VI +
Sbjct: 261 EVKKLMDEVIKS 272
>gi|289676029|ref|ZP_06496919.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas syringae
pv. syringae FF5]
Length = 224
Score = 102 bits (253), Expect = 5e-20, Method: Composition-based stats.
Identities = 36/230 (15%), Positives = 71/230 (30%), Gaps = 29/230 (12%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTH-LLTTATLEEKVP----MWIRNTKHGWITAEYGMLP 67
++L +++ A G+ LV D +L T ++ + + + T G +P
Sbjct: 15 VTLETGRIARQASGAVLVTVDDDVSVLVTVVGAKQADAGKGFFPLSVHYQEKTYAAGKIP 74
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R GR + R+I R +R + + Q++
Sbjct: 75 GGFFKR------EGRPSEKETLTSRLIDRPIRPLFPEGFMNEVQVVCTVVSTSKKIDPDI 128
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY-PIVDLDYGEDSTID 186
AA+ G A G V A +++ Y +
Sbjct: 129 AAMIGTSAA-------------LAISGIPFDGPVGAARVAFHESTGYLLNPTYEQLQASS 175
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+D T ++ V+ A+ ++D + A D +I K+
Sbjct: 176 LDMVVAGTSE-AVLMVESEAKE--LTEDQMLGAVLFAHDEFQVVINAIKE 222
>gi|301791884|ref|XP_002930910.1| PREDICTED: exosome complex exonuclease RRP43-like [Ailuropoda
melanoleuca]
Length = 276
Score = 102 bits (253), Expect = 6e-20, Method: Composition-based stats.
Identities = 42/252 (16%), Positives = 76/252 (30%), Gaps = 15/252 (5%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R GR+ + R ++ A+GS LVK G+T ++ E P G++
Sbjct: 23 RPDGRELGEFRTTTVNIGSISTADGSALVKLGNTTVICGIKAEFAAPPT-DTPDKGYVVP 81
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGS---RQIIIDCDV 118
+ P + Q + + DL + D
Sbjct: 82 NVDLPPLCSSRFRSGPPGEEAQVASQFIADVIENSQIIQKEDLCISPGKLSWVLYCDIIC 141
Query: 119 IQADGGTRTAAITGAWVALHDCLQHME---------DCSNKFQLSQVLKGHVAAISCGML 169
+ DG A AL + + K + ++ H A S +
Sbjct: 142 LDYDGNILDACTFALLAALKNVQLPEVTINEETGLAEVHLKKKSYLNIRTHPVATSFAVF 201
Query: 170 CGY-PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIA 228
IVD E+ VM + G + + + + ++ A R
Sbjct: 202 DDTLLIVDPTGEEEHLATGTLTVVMDEEGKLCCLHKPG-GSGLTGAKLQDCMSRAVTRHK 260
Query: 229 DLIKLQKDVISN 240
++ KL +VI +
Sbjct: 261 EVKKLMDEVIKS 272
>gi|296203741|ref|XP_002749024.1| PREDICTED: exosome complex exonuclease RRP43-like [Callithrix
jacchus]
Length = 276
Score = 102 bits (253), Expect = 6e-20, Method: Composition-based stats.
Identities = 42/252 (16%), Positives = 77/252 (30%), Gaps = 15/252 (5%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R GR+ + R ++ A+GS LVK G+T ++ E P G++
Sbjct: 23 RPDGRELGEFRTTTVNIGSISTADGSALVKLGNTTVICGVKAEFAAPPT-DAPDKGYVVP 81
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGS---RQIIIDCDV 118
+ P + Q + + DL + D
Sbjct: 82 NVDLPPLCSSRFRSGPPGEEAQVASQFIADVIENSQIIQKEDLCISPGKLAWVLYCDLIC 141
Query: 119 IQADGGTRTAAITGAWVALHDCLQHME---------DCSNKFQLSQVLKGHVAAISCGML 169
+ DG A AL + + + K + ++ H A S +
Sbjct: 142 LDYDGNILDACTFALLAALKNVQLPEVTINGETALAEVNLKKKSYLNIRTHPVATSFAVF 201
Query: 170 CGY-PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIA 228
IVD E+ VM + G + + + + ++ A R
Sbjct: 202 DDTLLIVDPTGEEEHLATGTLTIVMDEEGKLCCLHKPG-GSGLTGAKLQDCMSRAVTRHK 260
Query: 229 DLIKLQKDVISN 240
++ KL +VI +
Sbjct: 261 EVKKLMDEVIKS 272
>gi|109120492|ref|XP_001085228.1| PREDICTED: exosome complex exonuclease RRP43 isoform 2 [Macaca
mulatta]
Length = 276
Score = 102 bits (253), Expect = 6e-20, Method: Composition-based stats.
Identities = 42/252 (16%), Positives = 77/252 (30%), Gaps = 15/252 (5%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R GR+ + R ++ A+GS LVK G+T ++ E P G++
Sbjct: 23 RPDGRELGEFRTTTVNIGSISTADGSALVKLGNTTVICGVKAEFAAPPT-DAPDKGYVVP 81
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGS---RQIIIDCDV 118
+ P + Q + + DL + D
Sbjct: 82 NVDLPPLCSSRFRSGPPGEEAQVASQFIADVIENSQIIQKEDLCISPGKLAWVLYCDLIC 141
Query: 119 IQADGGTRTAAITGAWVALHDCLQHME---------DCSNKFQLSQVLKGHVAAISCGML 169
+ DG A AL + + + K + ++ H A S +
Sbjct: 142 LDYDGNILDACTFALLAALKNVQLPEVTINEETALAEVNLKKKSYLNIRTHPVATSFAVF 201
Query: 170 CGY-PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIA 228
IVD E+ VM + G + + + + ++ A R
Sbjct: 202 DDTLLIVDPTGEEEHLATGTLTIVMDEEGKLCCLHKPG-GSGLTGAKLQDCMSRAVTRHK 260
Query: 229 DLIKLQKDVISN 240
++ KL +VI +
Sbjct: 261 EVKKLMDEVIKS 272
>gi|114649397|ref|XP_522661.2| PREDICTED: exosome complex component RRP43 isoform 4 [Pan
troglodytes]
Length = 276
Score = 102 bits (253), Expect = 6e-20, Method: Composition-based stats.
Identities = 42/252 (16%), Positives = 77/252 (30%), Gaps = 15/252 (5%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R GR+ + R ++ A+GS LVK G+T ++ E P G++
Sbjct: 23 RPDGRELGEFRTTTVNIGSISTADGSALVKLGNTTVICGVKAEFAAPPT-DAPDKGYVVP 81
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGS---RQIIIDCDV 118
+ P + Q + + DL + D
Sbjct: 82 NVDLPPLCSSRFRSGPPGEEAQVASQFIADVIENSQIIQKEDLCISPGKLVWVLYCDLIC 141
Query: 119 IQADGGTRTAAITGAWVALHDCLQHME---------DCSNKFQLSQVLKGHVAAISCGML 169
+ DG A AL + + + K + ++ H A S +
Sbjct: 142 LDYDGNILDACTFALLAALKNVQLPEVTINEETALAEVNLKKKSYLNIRTHPVATSFAVF 201
Query: 170 CGY-PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIA 228
IVD E+ VM + G + + + + ++ A R
Sbjct: 202 DDTLLIVDPTGEEEHLATGTLTIVMDEEGKLCCLHKPG-GSGLTGAKLQDCMSRAVTRHK 260
Query: 229 DLIKLQKDVISN 240
++ KL +VI +
Sbjct: 261 EVKKLMDEVIKS 272
>gi|224106782|ref|XP_002314284.1| predicted protein [Populus trichocarpa]
gi|222850692|gb|EEE88239.1| predicted protein [Populus trichocarpa]
Length = 257
Score = 101 bits (252), Expect = 6e-20, Method: Composition-based stats.
Identities = 38/240 (15%), Positives = 75/240 (31%), Gaps = 23/240 (9%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+R GR +Q R A GS +FG+T ++ + + + + G +
Sbjct: 34 LRPDGRGFHQCRPAFFRTGAVNSAAGSAYAEFGNTKVIVSVFGPRESKKAMVYSDVGRLN 93
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
+T R G ++E M+ +AL + L + + V++
Sbjct: 94 CNVSCTTFATPARG--------LGSDNKEFSSMLHKALEGAIMLETFPKTTVDVFALVLE 145
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
+ G I+ A +AL D M D + + I +
Sbjct: 146 SGGSDLPVVISCASLALADAGIMMYDLVAGVSV------------SCLGRNLIIDPILEE 193
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
E M + ++ + E +S + L D + L K+ + +
Sbjct: 194 ESFQDGSLMITCMPSRYEVTQLSITGE---WSTAKLNEAMQLCLDACSKLDKIMRACLKE 250
>gi|224537711|ref|ZP_03678250.1| hypothetical protein BACCELL_02593 [Bacteroides cellulosilyticus
DSM 14838]
gi|224520634|gb|EEF89739.1| hypothetical protein BACCELL_02593 [Bacteroides cellulosilyticus
DSM 14838]
Length = 467
Score = 101 bits (252), Expect = 7e-20, Method: Composition-based stats.
Identities = 37/241 (15%), Positives = 73/241 (30%), Gaps = 26/241 (10%)
Query: 3 LSGRQENQMREISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
GR I+L ++K A+GS +++ G+T LL T +
Sbjct: 12 PDGRT------ITLETGKLAKQADGSVMLRMGNTMLLATVCAAKDAVPGTDFMPLQVEYK 65
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
E GR R++ RALR + + + I
Sbjct: 66 EKFSASGRFP--GGFTKREGRASDYEILTCRLVDRALRPLFPDNYHAEVYVNIILYSADG 123
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
L + + G ++ + + G +++ + +
Sbjct: 124 IDIPDA-------------LAGLAASAALAVSDIPFNGPISEVRVARIDGQFVINPTFDQ 170
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
D+D T +I+ V+ E + S+ + A + I QK+ ++
Sbjct: 171 LEKADMDLMVGATYE-NIMMVE--GEMSEVSELDLLNAMKAAHEAIKVQCLAQKE-LAEA 226
Query: 242 V 242
V
Sbjct: 227 V 227
Score = 97.2 bits (240), Expect = 2e-18, Method: Composition-based stats.
Identities = 33/155 (21%), Positives = 60/155 (38%), Gaps = 10/155 (6%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHG 57
RL GR+ +++R I GS + G+T L+T T L+EK+ +
Sbjct: 319 RLDGRKTDEIRPIWSEINCLPGPHGSAIFTRGETQSLSTVTLGTKLDEKIIDNVLEHGKE 378
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P STG + V R+ G RAL+ + + + D
Sbjct: 379 RFLLHYNFPPFSTGEAKAQRGVGRREVGHGHL----AWRALKGQIPADY--PYVVRVVSD 432
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQ 152
+++++G + A + +AL D ++ +
Sbjct: 433 ILESNGSSSMATVCAGTLALMDAGVKIKQPVSGIA 467
>gi|307178493|gb|EFN67182.1| Exosome complex exonuclease MTR3 [Camponotus floridanus]
Length = 282
Score = 101 bits (251), Expect = 8e-20, Method: Composition-based stats.
Identities = 43/237 (18%), Positives = 81/237 (34%), Gaps = 9/237 (3%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R GR N++R I L + A+GS ++ G+T ++ + +VP G +
Sbjct: 37 RHDGRSNNELRNIFLKTGIISQAKGSAYIEMGNTKIICSVFDPREVPNKTGYCVQGELFC 96
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
E+ P S R + Q +E ++ RAL V L + Q+ + V+
Sbjct: 97 EFKFAPFSHHKRKMHQ-----QDAEEKEYSLILQRALEPAVCLQEFPNFQVDVYATVLDN 151
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
G AAI A +AL + M + ++ + +
Sbjct: 152 GGSALAAAIMAASLALANAGVPMFGLVTASTVGIYDHTYLVDPTDTEETFCCTKSVPGTV 211
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
+ + G I E+ + D ++L + D+ L + +
Sbjct: 212 -HNHGIIIQAALPQHGQISEMFV---VGSVDTDTIVHSMDLISEAHKDICPLLEQCL 264
>gi|119872347|ref|YP_930354.1| exosome complex RNA-binding protein Rrp42 [Pyrobaculum islandicum
DSM 4184]
gi|119673755|gb|ABL88011.1| ribosomal RNA-processing protein RRP42 [Pyrobaculum islandicum DSM
4184]
Length = 274
Score = 101 bits (251), Expect = 9e-20, Method: Composition-based stats.
Identities = 60/254 (23%), Positives = 98/254 (38%), Gaps = 25/254 (9%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R+ GR+ ++R I + V K A+GS VK G TH++ + P + G +
Sbjct: 29 RIDGREPERIRNIEIKTSVIKTADGSAEVKLGKTHVVAGVKVSLGQP-FPDAPDEGVLVV 87
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGS-------RQIII 114
+LP ++ G + E+ R+I R +R + + +
Sbjct: 88 NAEVLPHASP-----YTEVGPPDEFAIELARVIDRGIRHCGYVDFKKLVVEGGKAYVLWV 142
Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHME---------DCSNKFQLSQVLKGHVAAIS 165
D VI DG AA A AL D + D +NK L + A+S
Sbjct: 143 DLYVINDDGNLIDAANLAAVAALKDTQLPVVVKDEQGVKLDRNNKTPLPIEVSKAPIAVS 202
Query: 166 CGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKD 225
G + G +D + E+ ++D F +++ IV VQ + TF+ L LA
Sbjct: 203 VGKIGGVLFLDPTFEEELSLDGRITFTISED-RIVAVQKTI--GTFTSQELEMALELAWK 259
Query: 226 RIADLIKLQKDVIS 239
LI + V+
Sbjct: 260 GKEQLITAARGVLG 273
>gi|126327460|ref|XP_001368047.1| PREDICTED: similar to Chain G, Structure Of The Human Rna Exosome
Composed Of Rrp41, Rrp45, Rrp46, Rrp43, Mtr3, Rrp42,
Csl4, Rrp4, And Rrp40 [Monodelphis domestica]
Length = 276
Score = 101 bits (251), Expect = 9e-20, Method: Composition-based stats.
Identities = 43/252 (17%), Positives = 79/252 (31%), Gaps = 15/252 (5%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R GR+ + R ++ A+GS LVK G+T ++ E P + + G+I
Sbjct: 23 RPDGRELGEFRTTTVNIGSITTADGSALVKLGNTTVICGVKGEFAAPP-VDSLNKGYIVP 81
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGS---RQIIIDCDV 118
+ P + Q + + DL + D
Sbjct: 82 NVDLPPLCSSRFRSGPPGEEAQVASQFIADVIENSQIIQKEDLCISHGKLAWVLYCDLIC 141
Query: 119 IQADGGTRTAAITGAWVALHDCLQHME---------DCSNKFQLSQVLKGHVAAISCGML 169
+ DG A AL + + + K + ++ H A S +
Sbjct: 142 LDYDGNILDACTFALLAALKNVQLPAVIINEETGLAEVNLKKKSHLNIRTHPIATSFAIF 201
Query: 170 CGY-PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIA 228
IVD E+ VM + G + + + + ++ A R
Sbjct: 202 DDTLLIVDPTGEEEHLATGTLTVVMDEEGKLCCLHKPG-GSGLTGAKLQDCMSRAVTRHK 260
Query: 229 DLIKLQKDVISN 240
++ KL +VI +
Sbjct: 261 EVKKLMDEVIKS 272
>gi|118487722|gb|ABK95685.1| unknown [Populus trichocarpa]
Length = 257
Score = 101 bits (251), Expect = 1e-19, Method: Composition-based stats.
Identities = 38/240 (15%), Positives = 74/240 (30%), Gaps = 23/240 (9%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+R GR Q R A GS +FG+T ++ + + + + G +
Sbjct: 34 LRPDGRDFQQCRPAFFRTGAVNSAAGSAYAEFGNTKVIVSVFGPRESKKAMVYSDVGRLN 93
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
+T R G ++E M+ +AL + L + + V++
Sbjct: 94 CNVSCTTFATPARG--------LGSDNKEFSSMLHKALEGAIMLETFPKTTVDVFALVLE 145
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
+ G I+ A +AL D M D + + I +
Sbjct: 146 SGGSDLPVVISCASLALADAGIMMYDLVAGVSV------------SCLGRNLIIDPILEE 193
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
E M + ++ + E +S + L D + L K+ + +
Sbjct: 194 ESFQDGSLMITCMPSRYEVTQLSITGE---WSTAKLNEAMQLCLDACSKLDKIMRACLKE 250
>gi|328769717|gb|EGF79760.1| hypothetical protein BATDEDRAFT_19845 [Batrachochytrium
dendrobatidis JAM81]
Length = 253
Score = 101 bits (250), Expect = 1e-19, Method: Composition-based stats.
Identities = 55/242 (22%), Positives = 94/242 (38%), Gaps = 22/242 (9%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWI-RNTKHGWI 59
+R+ GR+ ++R + + A+GS ++ G+T + ++ + + I
Sbjct: 24 LRVDGRRPPELRRLLTKVGLFTNADGSAYIELGNTKCVAAVYGPKESKIQSAQLHDRAVI 83
Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119
EY + S+G R + R EI +I R VV S +I I ++
Sbjct: 84 NVEYNVASFSSGERKLKMKRDKR----MLEIASIIKRTFEPVVMTSTFPRSEIDIYVQIL 139
Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179
Q DGG AAI +A+ D M D V A S G G ++DL+Y
Sbjct: 140 QLDGGALHAAINATCLAMIDAGIPMSDY-------------VIACSAGFSNGSALLDLNY 186
Query: 180 GEDSTIDVDANFV-MTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
E+S + SG + + + +HF +LNLA + L + + +
Sbjct: 187 IEESAELPVLTAALLPKSGKLTMLSM---ESRLHLNHFQDVLNLATEGCNTLAESLNETV 243
Query: 239 SN 240
Sbjct: 244 RK 245
>gi|118576718|ref|YP_876461.1| RNase PH-related exoribonuclease [Cenarchaeum symbiosum A]
gi|118195239|gb|ABK78157.1| RNase PH-related exoribonuclease [Cenarchaeum symbiosum A]
Length = 270
Score = 101 bits (250), Expect = 1e-19, Method: Composition-based stats.
Identities = 44/250 (17%), Positives = 89/250 (35%), Gaps = 21/250 (8%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R+ GR+ ++ R++++ AEGS V G T ++T ++ P + G
Sbjct: 24 RIDGRRLDEPRKLTIETNAIPKAEGSARVHLGRTDVVTGVKVQPDRP-FPDVGDRGIFIC 82
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSV--------VDLSALGSRQII 113
+LP + + +G E+ R++ R +R V L I
Sbjct: 83 TAEILPLAHPD-----VETGPPSPAVIELARVVDRGIRESGMVDLSKLVLLKDKSVIGIF 137
Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQ------VLKGHVAAISCG 167
D VI DG A A A+ + ++ + + +++
Sbjct: 138 ADSSVIDVDGNLFDACSYAATAAILTAKLPKWEIQDEAPVRIEGETPVPVTTIPVSVTMA 197
Query: 168 MLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRI 227
+ G+ +VD + E + +D G+I +Q + F+ ++
Sbjct: 198 KINGHILVDPNQDEWAVMDARITITTNSDGNICALQKGGN-SGFTHAELVKCGEISVRVG 256
Query: 228 ADLIKLQKDV 237
AD+ ++ K
Sbjct: 257 ADIREIIKRA 266
>gi|122920909|pdb|2NN6|C Chain C, Structure Of The Human Rna Exosome Composed Of Rrp41,
Rrp45, Rrp46, Rrp43, Mtr3, Rrp42, Csl4, Rrp4, And Rrp40
Length = 278
Score = 101 bits (250), Expect = 1e-19, Method: Composition-based stats.
Identities = 42/252 (16%), Positives = 77/252 (30%), Gaps = 15/252 (5%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R GR+ + R ++ A+GS LVK G+T ++ E P G++
Sbjct: 25 RPDGRELGEFRTTTVNIGSISTADGSALVKLGNTTVICGVKAEFAAPST-DAPDKGYVVP 83
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGS---RQIIIDCDV 118
+ P + Q + + DL + D
Sbjct: 84 NVDLPPLCSSRFRSGPPGEEAQVASQFIADVIENSQIIQKEDLCISPGKLVWVLYCDLIC 143
Query: 119 IQADGGTRTAAITGAWVALHDCLQHME---------DCSNKFQLSQVLKGHVAAISCGML 169
+ DG A AL + + + K + ++ H A S +
Sbjct: 144 LDYDGNILDACTFALLAALKNVQLPEVTINEETALAEVNLKKKSYLNIRTHPVATSFAVF 203
Query: 170 CGY-PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIA 228
IVD E+ VM + G + + + + ++ A R
Sbjct: 204 DDTLLIVDPTGEEEHLATGTLTIVMDEEGKLCCLHKPG-GSGLTGAKLQDCMSRAVTRHK 262
Query: 229 DLIKLQKDVISN 240
++ KL +VI +
Sbjct: 263 EVKKLMDEVIKS 274
>gi|27528790|emb|CAD29620.1| hypothetical protein [Streptomyces olivaceoviridis]
Length = 180
Score = 101 bits (250), Expect = 1e-19, Method: Composition-based stats.
Identities = 85/174 (48%), Positives = 112/174 (64%)
Query: 65 MLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGG 124
MLPR+T R RE+V GR GGR+ EI R+IGR+LR+VVD ALG I++DCDV+QADGG
Sbjct: 1 MLPRATNTRGDRESVRGRIGGRTHEISRLIGRSLRAVVDYKALGENTIVLDCDVLQADGG 60
Query: 125 TRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDST 184
TRTAAITGA+VAL D + + + + G V+A+S G++ G P++DL Y ED
Sbjct: 61 TRTAAITGAYVALADAVAWAQGKKLIRAGRKPITGTVSAVSVGIVGGVPLLDLCYEEDVK 120
Query: 185 IDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
D D N V T G VEVQG+AE F++D A+L+LA +L LQ +
Sbjct: 121 ADTDMNVVCTGDGRFVEVQGTAEAEPFARDELNALLDLAVSGCTELAALQTKAL 174
>gi|31415882|ref|NP_852480.1| exosome complex component RRP43 [Homo sapiens]
gi|21759409|sp|Q96B26|EXOS8_HUMAN RecName: Full=Exosome complex component RRP43; AltName:
Full=Exosome component 8; AltName: Full=Opa-interacting
protein 2; Short=OIP-2; AltName: Full=Ribosomal
RNA-processing protein 43; AltName: Full=p9
gi|18088472|gb|AAH20773.1| Exosome component 8 [Homo sapiens]
gi|123992916|gb|ABM84060.1| exosome component 8 [synthetic construct]
gi|123999809|gb|ABM87413.1| exosome component 8 [synthetic construct]
gi|208966244|dbj|BAG73136.1| exosome component 8 [synthetic construct]
Length = 276
Score = 101 bits (250), Expect = 1e-19, Method: Composition-based stats.
Identities = 42/252 (16%), Positives = 77/252 (30%), Gaps = 15/252 (5%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R GR+ + R ++ A+GS LVK G+T ++ E P G++
Sbjct: 23 RPDGRELGEFRTTTVNIGSISTADGSALVKLGNTTVICGVKAEFAAPST-DAPDKGYVVP 81
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGS---RQIIIDCDV 118
+ P + Q + + DL + D
Sbjct: 82 NVDLPPLCSSRFRSGPPGEEAQVASQFIADVIENSQIIQKEDLCISPGKLVWVLYCDLIC 141
Query: 119 IQADGGTRTAAITGAWVALHDCLQHME---------DCSNKFQLSQVLKGHVAAISCGML 169
+ DG A AL + + + K + ++ H A S +
Sbjct: 142 LDYDGNILDACTFALLAALKNVQLPEVTINEETALAEVNLKKKSYLNIRTHPVATSFAVF 201
Query: 170 CGY-PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIA 228
IVD E+ VM + G + + + + ++ A R
Sbjct: 202 DDTLLIVDPTGEEEHLATGTLTIVMDEEGKLCCLHKPG-GSGLTGAKLQDCMSRAVTRHK 260
Query: 229 DLIKLQKDVISN 240
++ KL +VI +
Sbjct: 261 EVKKLMDEVIKS 272
>gi|47220383|emb|CAF98482.1| unnamed protein product [Tetraodon nigroviridis]
Length = 291
Score = 101 bits (250), Expect = 1e-19, Method: Composition-based stats.
Identities = 45/277 (16%), Positives = 83/277 (29%), Gaps = 43/277 (15%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIR--------- 52
R+ GR+ ++R+I V A+GS ++ G+T L +V + +
Sbjct: 13 RIDGRKATELRKIQARMGVFAQADGSAYLEQGNTKALAVVYGPHEVCVCVCVCVCVCVCQ 72
Query: 53 --------NTKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDL 104
I +Y M ST R +R + + + + + V
Sbjct: 73 MRGSRSRARHDRAVINCQYSMATFSTAERKRRPHGDRKSTE----MSLHLKQTFEAAVMT 128
Query: 105 SALGSRQIIIDCDVIQADGGTR------------------TAAITGAWVALHDCLQHMED 146
QI I V + + +
Sbjct: 129 QLFPRSQIDIYVKVGLVLMFSLLESRLSQAFYLSVMDKDPPCLQILQSDGGNYSVCVNAA 188
Query: 147 CSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFV-MTDSGHIVEVQGS 205
++ +V A + G + P+ DL Y E+S + G I VQ
Sbjct: 189 TLAVIDAGIPMRDYVCACTVGFVDETPLADLCYAEESGGVSSLGLALLPRGGQIALVQMD 248
Query: 206 AERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNEV 242
A QD+ A++ A + K+ +V+ +
Sbjct: 249 AR---LHQDNLDALMEAAMTACKGVSKVLDEVVRQHL 282
>gi|332017939|gb|EGI58588.1| Exosome complex exonuclease RRP41 [Acromyrmex echinatior]
Length = 272
Score = 101 bits (250), Expect = 1e-19, Method: Composition-based stats.
Identities = 46/242 (19%), Positives = 92/242 (38%), Gaps = 12/242 (4%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEK-VPMWIRNTKHGWI 59
+R+ GR+ ++R+I + V A+GS ++ G+T +L + RN+ I
Sbjct: 12 LRIDGRRALELRQIRMRMGVFGQADGSAYIEHGNTKVLAAVYGPRQSRSSASRNSTKAII 71
Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119
+Y M S + R +SQE + A+ +++ L QI + +V+
Sbjct: 72 NCQYSMAVFSFTS--GERKRRPRGDWKSQERSAQLRHAMEAIIHLELYPRSQIDVFVEVL 129
Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179
Q DG A++ A +AL D +++ + ++ V K V + G +
Sbjct: 130 QVDGSDYCASVNAATLALIDAGIPIKNYAIGCSVTLVNKPSVEDEDKTLATGVLDANYVE 189
Query: 180 GEDSTIDVDAN--------FVMTDSGHIVEVQGSAERATFS-QDHFFAMLNLAKDRIADL 230
+ + + +G IV G+ +R S + + I +
Sbjct: 190 ECSPGVTLSVVALAGTNNDIEVDGNGLIVVAHGAGQRLHLSCLETLKQRVLQGCQDIKTI 249
Query: 231 IK 232
+
Sbjct: 250 LD 251
>gi|66267273|gb|AAH95236.1| Exosome component 8 [Danio rerio]
Length = 277
Score = 100 bits (249), Expect = 1e-19, Method: Composition-based stats.
Identities = 49/250 (19%), Positives = 82/250 (32%), Gaps = 17/250 (6%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R GR+ + R +L A+GS LVK G+T ++ E VP G++
Sbjct: 23 RPDGRELGEFRPTTLNINSISTADGSALVKIGNTTVICGIKAELAVPPS-EAQNKGYLVP 81
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRA----LRSVVDLSALGSRQIIIDCD 117
+ P + +R + + SQ I +I + L + A + D
Sbjct: 82 NVDLPPLCS-SRFRAGPPGEQAQAASQFIADVIESSDLINLEELCIEKAKLCWVLYCDIM 140
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSN----------KFQLSQVLKGHVAAISCG 167
+ DG A IT AL + K + ++ + V +
Sbjct: 141 CLDYDGNLLDACITVLLAALKTAQLPEVTINKETDLAEVDIEKKRRLKINRHPVGSSFAV 200
Query: 168 MLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRI 227
IVD E+S V + + V + S + +N A R
Sbjct: 201 FDDSIIIVDPTAEEESLSTALMTVVTDEEDRLCAVHKPG-GTSLSGEKLQHCINRAITRN 259
Query: 228 ADLIKLQKDV 237
++ KL V
Sbjct: 260 KEIRKLLDKV 269
>gi|281204136|gb|EFA78332.1| Exosome complex exonuclease rrp41 [Polysphondylium pallidum PN500]
Length = 248
Score = 100 bits (249), Expect = 1e-19, Method: Composition-based stats.
Identities = 54/243 (22%), Positives = 100/243 (41%), Gaps = 21/243 (8%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRN-TKHGWI 59
+R+ GR+ N++R +++ + A+GS + G+T + +V R +
Sbjct: 12 LRIDGRRNNEIRRLNMKMGIFNRADGSAYYEQGNTKITVAVYGPREVASNQRMLHDRAIV 71
Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119
EY S+ K S +Q EI +I +A S + ++ QI I V+
Sbjct: 72 NCEYSQAAFSSATDRKPTRKSDKQS---YEIASLIKQAFESTIQITLFPRSQIDIYVQVL 128
Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179
QADGG + AA+ A +A+ D M D + A S + G P++D++
Sbjct: 129 QADGGLKAAALNAATLAVIDAGLPMRDF-------------ICACSATFIEGVPLLDMNQ 175
Query: 180 GEDSTIDVDANFVM-TDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
E+ + D + G ++ + ++ QD F ++L LA + L + +
Sbjct: 176 MEERSGGADLLLSIQPQLGGVISLNMESK---VPQDMFESVLELANLGCMKIFALLQTEV 232
Query: 239 SNE 241
Sbjct: 233 KRH 235
>gi|126640155|ref|YP_001083139.1| ribonuclease PH [Acinetobacter baumannii ATCC 17978]
Length = 174
Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats.
Identities = 92/175 (52%), Positives = 116/175 (66%), Gaps = 2/175 (1%)
Query: 65 MLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGG 124
MLPRST +R REA G+Q GR+QEIQR+IGR+LR++VDL LG I IDCDVIQADGG
Sbjct: 1 MLPRSTHSRCDREAARGKQTGRTQEIQRLIGRSLRAMVDLKKLGENTITIDCDVIQADGG 60
Query: 125 TRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDST 184
TRTA+ITGA VAL D + + K LKG VAAIS GM ++DL Y EDS
Sbjct: 61 TRTASITGAAVALVDAMN--VLLAQKKIKQDPLKGLVAAISVGMYQDEVLLDLCYEEDSN 118
Query: 185 IDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
D N VMT +G +E+QG+AE F++ AML +A+ IA+LIK Q++ +
Sbjct: 119 CQTDLNVVMTQAGEFIEIQGTAEDKPFTRAQSNAMLEMAEKGIAELIKKQQEALG 173
>gi|118489169|gb|ABK96391.1| unknown [Populus trichocarpa x Populus deltoides]
Length = 257
Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats.
Identities = 38/240 (15%), Positives = 76/240 (31%), Gaps = 23/240 (9%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+R GR +Q R A GS +FG+T ++ + + + + G +
Sbjct: 34 LRPDGRGFHQCRPAFFRTGAVNSAAGSAYAEFGNTKVIVSVFGPRESKKAMVYSDVGRLN 93
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
+T R G ++E M+ +AL + L + + V++
Sbjct: 94 CNVSCTTFATPARG--------LGSDNKEFSSMLHKALEGAIMLETFPKTTVDVFALVLE 145
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
+ G I+ A +AL D M D + + I +
Sbjct: 146 SGGSDLPVVISCASLALADAGIMMYDLVAGVSV------------SCLGRNLIIDPILEE 193
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
E M + ++ + E +S ++L D + L K+ + +
Sbjct: 194 ESFQDGSLMITCMPSRYEVTQLSITGE---WSTAKLNEAMHLCLDACSKLDKIMRACLKE 250
>gi|297693867|ref|XP_002824217.1| PREDICTED: exosome complex exonuclease RRP43-like [Pongo abelii]
Length = 276
Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats.
Identities = 42/252 (16%), Positives = 78/252 (30%), Gaps = 15/252 (5%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R GR+ + R ++ A+GS LVK G+T ++ E P G++
Sbjct: 23 RPDGRELGEFRTTTVNVGSISTADGSALVKLGNTTVICGVKAEFAAPPT-DAPDTGYVVP 81
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGS---RQIIIDCDV 118
+ P + Q + + DL + D
Sbjct: 82 NVDLPPLCSSRFRSGPPGEEAQVASQFIADVIENSQIIQKEDLCISPGKLVWVLYCDLIC 141
Query: 119 IQADGGTRTAAITGAWVALHDCLQHME---------DCSNKFQLSQVLKGHVAAISCGML 169
+ DG A AL + + + K + ++ H A S +
Sbjct: 142 LDYDGNILDACTFALLAALKNVQLPEVTINEETALAEVNLKKKSYLNVRTHPVATSFAVF 201
Query: 170 CGY-PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIA 228
IVD E+ VM + G + + + + ++ A R
Sbjct: 202 DDTLLIVDPTGEEEHLATGTLTIVMDEEGKLCCLHKPG-GSGLTGAKLQDCMSRAVTRHK 260
Query: 229 DLIKLQKDVISN 240
++ KL +VI++
Sbjct: 261 EVKKLMDEVINS 272
>gi|148230376|ref|NP_001088781.1| hypothetical protein LOC496046 [Xenopus laevis]
gi|56269196|gb|AAH87445.1| LOC496046 protein [Xenopus laevis]
Length = 276
Score = 100 bits (248), Expect = 2e-19, Method: Composition-based stats.
Identities = 36/252 (14%), Positives = 75/252 (29%), Gaps = 15/252 (5%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R GR+ + R ++ A+GS LVK G+ +L E P G++
Sbjct: 23 RPDGRELTEFRTTTINVGSITTADGSALVKLGNCTVLCGVKAEFAAPPA-DAPNKGYVVP 81
Query: 62 EYGMLPRS-TGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGS--RQIIIDCDV 118
+ P + R + + + L G + D
Sbjct: 82 NVDLSPLCSSQFRPGPPGEEAQVASQFMADVIDNSQMLLKEDLCIRHGKLAWVLYCDLIC 141
Query: 119 IQADGGTRTAAITGAWVALHDCLQHMEDCSNK----------FQLSQVLKGHVAAISCGM 168
+ DG AL + + + ++LK +A
Sbjct: 142 LDYDGNLLDTCTCALVAALQNVRLPSVKINEETGLAEVNLKTKCALKILKHPIATSFAVF 201
Query: 169 LCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIA 228
+ + D E+S V + + Q ++ S + ++ A R
Sbjct: 202 DDKFLLADPTGEEESLARGLLTVVTDEDERLCATQKPG-GSSLSAEKLQECISRAITRHK 260
Query: 229 DLIKLQKDVISN 240
++ L ++ +++
Sbjct: 261 EVTTLLQEALAS 272
>gi|302801728|ref|XP_002982620.1| hypothetical protein SELMODRAFT_155148 [Selaginella moellendorffii]
gi|300149719|gb|EFJ16373.1| hypothetical protein SELMODRAFT_155148 [Selaginella moellendorffii]
Length = 242
Score = 100 bits (248), Expect = 2e-19, Method: Composition-based stats.
Identities = 61/242 (25%), Positives = 106/242 (43%), Gaps = 22/242 (9%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVP-MWIRNTKHGWI 59
+RL GR+ +MR++ V + A GS + + G+T ++ +V + +
Sbjct: 9 LRLDGRRPLEMRQLHAELGVVENANGSAMFEMGNTKVIAAVYGPHEVHNRSQQLWDRALV 68
Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119
EY M STG+R ++ + R I +I + L + + + + QI I V+
Sbjct: 69 RCEYSMAAFSTGDRRRKGKGNRRSTE----ISLVIRQTLEAAILTNLMPKSQIDIYVQVL 124
Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179
QADGGTR+A I A +AL + M D VA+ + G L G P++DL+Y
Sbjct: 125 QADGGTRSACINAAALALAEAGIPMRDL-------------VASCAAGYLNGTPLLDLNY 171
Query: 180 GEDSTIDVDANFVM-TDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
EDS D + + +Q ++ +HF + LA + + ++V+
Sbjct: 172 VEDSGGGPDVTVALFPKVDKVSLLQMDSK---LPLEHFENVFQLAAEGAKAAARYMREVL 228
Query: 239 SN 240
Sbjct: 229 ME 230
>gi|50838810|ref|NP_001002865.1| exosome complex exonuclease RRP43 [Danio rerio]
gi|49618917|gb|AAT68043.1| Opa-interacting protein 2 [Danio rerio]
Length = 277
Score = 100 bits (248), Expect = 2e-19, Method: Composition-based stats.
Identities = 49/250 (19%), Positives = 82/250 (32%), Gaps = 17/250 (6%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R GR+ + R +L A+GS LVK G+T ++ E VP G++
Sbjct: 23 RPDGRELGEFRPTTLNINSISTADGSALVKIGNTTVICGIKAELAVPPS-EAQNKGYLVP 81
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRA----LRSVVDLSALGSRQIIIDCD 117
+ P + +R + + SQ I +I + L + A + D
Sbjct: 82 NVDLPPLCS-SRFRAGPPGEQAQAASQFIADVIESSDLINLEELCIEKAKLCWVLYCDIM 140
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSN----------KFQLSQVLKGHVAAISCG 167
+ DG A IT AL + K + ++ + V +
Sbjct: 141 CLDYDGNLLDACITVLLAALKTAQLPEVTINKETDLAEVDIEKKRRLKINRHPVGSSFAV 200
Query: 168 MLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRI 227
IVD E+S V + + V + S + +N A R
Sbjct: 201 FDDSIIIVDPTAEEESLSTALMTVVTDEEDRLCAVHKPG-GTSLSGEKLQHCINRALTRN 259
Query: 228 ADLIKLQKDV 237
++ KL V
Sbjct: 260 KEIRKLLDKV 269
>gi|324522716|gb|ADY48116.1| Exosome complex exonuclease RRP41 [Ascaris suum]
Length = 249
Score = 99 bits (247), Expect = 3e-19, Method: Composition-based stats.
Identities = 54/243 (22%), Positives = 89/243 (36%), Gaps = 19/243 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT-KHGWI 59
RL GR+ +Q+R I+ V A+GS ++ G+T +L + R +
Sbjct: 9 FRLDGRKPHQIRNINYKLGVYTQADGSAYLEQGNTKVLCAVYGPHEPRQRNRTQEDRCTV 68
Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119
+Y M ST R R RS E R++ +A + + + QI I C+++
Sbjct: 69 NCQYSMATFSTNERK----ERPRGDRRSMEFARLMEKAFETAILVENYPHAQIDIFCELL 124
Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179
QADG A + A +AL D M + L G A + +
Sbjct: 125 QADGSHLAACVNAATLALADAGVPMRGLVAAASCACALDGTPCADVSAREESNVMPRI-- 182
Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
AN D + E+Q +DH ML A+ + + + +S
Sbjct: 183 -------TIANISGMDEIILTELQ-----NRLHRDHLIPMLQCARMAASQVHSCLEVAVS 230
Query: 240 NEV 242
+
Sbjct: 231 AHI 233
>gi|291408704|ref|XP_002720651.1| PREDICTED: exosome component 8 [Oryctolagus cuniculus]
Length = 276
Score = 99 bits (247), Expect = 3e-19, Method: Composition-based stats.
Identities = 42/252 (16%), Positives = 77/252 (30%), Gaps = 15/252 (5%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R GR+ + R ++ A+GS LVK G+T ++ E P G++
Sbjct: 23 RPDGRELGEFRTTTVNIGSISTADGSALVKLGNTTVICGIKAEFAAPPA-DAPDKGYVVP 81
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGS---RQIIIDCDV 118
+ P + Q + + DL + D
Sbjct: 82 NVDLPPLCSSRFRSGPPGEEAQVASQFIADVIENSRIIQKEDLCISPGKLAWVLYCDLIC 141
Query: 119 IQADGGTRTAAITGAWVALHDCLQHME---------DCSNKFQLSQVLKGHVAAISCGML 169
+ DG A AL + + + K + ++ H A S +
Sbjct: 142 LDYDGNILDACTFALLAALKNVQLPEVTINEETALAEVNLKKKSYLNIRTHPVATSFAVF 201
Query: 170 CGY-PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIA 228
IVD E+ VM + G + + + + ++ A R
Sbjct: 202 DDTLLIVDPTGEEEHLATGTLTVVMDEEGKLCCLHKPG-GSGLTGAKLQDCMSRAVTRHK 260
Query: 229 DLIKLQKDVISN 240
++ KL +VI +
Sbjct: 261 EVKKLMDEVIKS 272
>gi|148225933|ref|NP_001079391.1| exosome component 8 [Xenopus laevis]
gi|27371055|gb|AAH41271.1| MGC52847 protein [Xenopus laevis]
gi|76779666|gb|AAI06634.1| MGC52847 protein [Xenopus laevis]
Length = 276
Score = 99 bits (247), Expect = 3e-19, Method: Composition-based stats.
Identities = 38/252 (15%), Positives = 77/252 (30%), Gaps = 15/252 (5%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R GR+ + R ++ A+GS LVK G+ +L E P + G++
Sbjct: 23 RPDGRELTEFRTTTINVGSITTADGSALVKLGNCTVLCGVKAELAAPPA-DSPDKGYVVP 81
Query: 62 EYGMLPRS-TGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGS--RQIIIDCDV 118
+ P + R + + + L A G + D
Sbjct: 82 NVDLTPLCSSQFRPGPPGEEAQVASQFMADVIDNSQMLLKEDLCIAHGKLAWVLYCDLIC 141
Query: 119 IQADGGTRTAAITGAWVALHDCLQHMEDCSNK----------FQLSQVLKGHVAAISCGM 168
+ DG + AL + + + ++LK VA
Sbjct: 142 LDYDGNLLDTCMCALVAALQNVRLPSVKINEETGLAEVNLKTKCALKILKHPVATSFALF 201
Query: 169 LCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIA 228
+VD E+S V + + + + S + ++ A R
Sbjct: 202 DDTSLLVDPTGEEESLASGLLTVVTDEDERLCATRKPG-GSALSAEKLQECISRAITRHK 260
Query: 229 DLIKLQKDVISN 240
++ L ++ +++
Sbjct: 261 EVTNLLQEALAS 272
>gi|299742531|ref|XP_001832547.2| exosome component 4 [Coprinopsis cinerea okayama7#130]
gi|298405226|gb|EAU89296.2| exosome component 4 [Coprinopsis cinerea okayama7#130]
Length = 263
Score = 99 bits (247), Expect = 3e-19, Method: Composition-based stats.
Identities = 63/239 (26%), Positives = 92/239 (38%), Gaps = 21/239 (8%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIR-NTKHGWI 59
R GR++ ++R++S+ A+GS L+ G T +L + + M I
Sbjct: 16 FRSDGRRQYELRDLSIDLSRHGEADGSALISHGLTQVLVSVHGPREAKMRSHTFHDRANI 75
Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119
E + STG R KR R I VV S QI I ++
Sbjct: 76 NVEVTVASFSTGERRKRLKGDKRILE----FAATIKSTFEPVVRTSLYPRSQIDIYIQIL 131
Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179
Q DGGT I G +AL + M D V AIS G+ P++DL
Sbjct: 132 QQDGGTLQTCINGTTLALINAGIPMSDF-------------VCAISGGVHSTSPMLDLTT 178
Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
E++ + VM S +V V + F +L LA+D A L K K+ +
Sbjct: 179 LEENDVPHVTVAVMPKSKKVVLVTM---ETRLHVERFEEVLCLARDAAAVLHKEMKEAV 234
>gi|156230391|gb|AAI52249.1| MGC174638 protein [Danio rerio]
Length = 277
Score = 99 bits (247), Expect = 3e-19, Method: Composition-based stats.
Identities = 45/249 (18%), Positives = 74/249 (29%), Gaps = 15/249 (6%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R GR+ + R +L A+GS LVK G+T ++ E VP G++
Sbjct: 23 RPDGRELGEFRPTTLNINSISTADGSALVKIGNTTVICGIKAELAVPPS-EAQNKGYLVP 81
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSV---VDLSALGSRQIIIDCDV 118
+ P + Q + L + A + D
Sbjct: 82 NVDLPPLCSSRFGAGPPGEQAQAASQFIADVIESSDLINSEELCIEKAKLCWVLYCDIMC 141
Query: 119 IQADGGTRTAAITGAWVALHDCLQHMEDCSN----------KFQLSQVLKGHVAAISCGM 168
+ DG A IT AL + K + ++ + V +
Sbjct: 142 LDYDGNLLDACITVLLAALKTAQLPEVTINKETDLAEVDIEKKRRLKINRHPVGSSFAVF 201
Query: 169 LCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIA 228
IVD E+S V + + V + S + +N A R
Sbjct: 202 DDSIIIVDPTAEEESLSTALMTVVTDEEDRLCAVHKPG-GTSLSGEKLQHCINRAITRNK 260
Query: 229 DLIKLQKDV 237
++ KL V
Sbjct: 261 EIRKLLDKV 269
>gi|149730159|ref|XP_001495596.1| PREDICTED: similar to Exosome complex exonuclease RRP43 (Ribosomal
RNA-processing protein 43) (Exosome component 8) (p9)
(Opa-interacting protein 2) [Equus caballus]
Length = 276
Score = 99.5 bits (246), Expect = 3e-19, Method: Composition-based stats.
Identities = 41/252 (16%), Positives = 77/252 (30%), Gaps = 15/252 (5%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R GR+ + R ++ A+GS LVK G+T ++ E P G++
Sbjct: 23 RPDGRELGEFRTTTVNIGSISTADGSALVKLGNTTVICGIKAEFAAPPT-DAPDKGYVVP 81
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGS---RQIIIDCDV 118
+ P + Q + + DL + D
Sbjct: 82 NVDLPPLCSSRFRSGPPGEEAQVASQFIADVIENSQIIQKEDLCISPGKLAWVLYCDLIC 141
Query: 119 IQADGGTRTAAITGAWVALHDCLQHME---------DCSNKFQLSQVLKGHVAAISCGML 169
+ DG A AL + + + K + ++ H A S +
Sbjct: 142 LDYDGNILDACTFALLAALKNVQLPEVTISEETALAEVNLKKKSFLNIRTHPVATSFAVF 201
Query: 170 CGY-PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIA 228
IVD E+ VM + G + + + + ++ A R
Sbjct: 202 DDTLLIVDPTGEEEHLATGTLTVVMDEEGKLCCLHKPG-GSGLTGAKLQDCMSRAVTRHK 260
Query: 229 DLIKLQKDVISN 240
++ KL +V+ +
Sbjct: 261 EVKKLMDEVVKS 272
>gi|119628984|gb|EAX08579.1| exosome component 8, isoform CRA_a [Homo sapiens]
Length = 316
Score = 99.1 bits (245), Expect = 5e-19, Method: Composition-based stats.
Identities = 42/252 (16%), Positives = 76/252 (30%), Gaps = 16/252 (6%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R GR+ + R ++ A+GS LVK G+T ++ E P G++
Sbjct: 64 RPDGRELGEFRTTTVNIGSISTADGSALVKLGNTTVICGVKAEFAAPST-DAPDKGYVVP 122
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGS---RQIIIDCDV 118
+ P + Q + + DL + D
Sbjct: 123 NVDLPPLCSSRFRSGPPGEEAQVASQFIADVIENSQIIQKEDLCISPGKLVWVLYCDLIC 182
Query: 119 IQADGGTRTAAITGAWVALHDCLQHME---------DCSNKFQLSQVLKGHVAAISCGML 169
+ DG A AL + + + K + ++ H A S +
Sbjct: 183 LDYDGNILDACTFALLAALKNVQLPEVTINEETALAEVNLKKKSYLNIRTHPVATSFAVF 242
Query: 170 CGY-PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIA 228
IVD E+ VM + G + + + ++ A R
Sbjct: 243 DDTLLIVDPTGEEEHLATGTLTIVMDEEGKLCCLHKPG--IGLTGAKLQDCMSRAVTRHK 300
Query: 229 DLIKLQKDVISN 240
++ KL +VI +
Sbjct: 301 EVKKLMDEVIKS 312
>gi|295103372|emb|CBL00916.1| Polyribonucleotide nucleotidyltransferase (polynucleotide
phosphorylase) [Faecalibacterium prausnitzii SL3/3]
Length = 441
Score = 99.1 bits (245), Expect = 5e-19, Method: Composition-based stats.
Identities = 37/236 (15%), Positives = 76/236 (32%), Gaps = 31/236 (13%)
Query: 12 REISLTRRV---SKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKHGWITAEYG 64
R + A S L+++G+T ++ + E V + N ++ G
Sbjct: 25 RPFKVEMGKMCGLSNA--SALIRYGETCVMCNVVMSPKPREGVDFFPLNVEYEEKLYAAG 82
Query: 65 MLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGG 124
+P S R GR G R+ R++ R +R + I + + D
Sbjct: 83 RIPGSFMRR------EGRPGERAILTSRVVDRPMRPLFPKEMRNDVCITMTVMSLDPDCS 136
Query: 125 TRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDST 184
A + GA + G + + G++ G +++ +
Sbjct: 137 PEIAGMIGASLVT-------------AVSDIPWNGPIGGVQVGLVNGEIVLNPTQEQRKV 183
Query: 185 IDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
D+ T IV ++ A +D + A I +I+ +++
Sbjct: 184 SDLALTVAATMD-KIVMIEAGANE--VDEDTMLTAIKTAHVEIKKIIEFINKIVAE 236
Score = 87.2 bits (214), Expect = 2e-15, Method: Composition-based stats.
Identities = 24/112 (21%), Positives = 41/112 (36%), Gaps = 8/112 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR N++R ++ + GS + G T +LTT TL + ++ + + +
Sbjct: 322 RVDGRGINEIRPLAAEVGILPRVHGSGMFTRGQTQVLTTCTLGGTKDNQLMDDLTDEQTK 381
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGS 109
Y P S G + R+ G RAL V+
Sbjct: 382 RYIHHYNFPPYSVGEARAPRSPGRREIGHGAL----AERALVPVLPSLEEFP 429
>gi|55957290|emb|CAI14013.1| exosome component 8 [Homo sapiens]
gi|119628986|gb|EAX08581.1| exosome component 8, isoform CRA_c [Homo sapiens]
Length = 275
Score = 98.8 bits (244), Expect = 5e-19, Method: Composition-based stats.
Identities = 42/252 (16%), Positives = 76/252 (30%), Gaps = 16/252 (6%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R GR+ + R ++ A+GS LVK G+T ++ E P G++
Sbjct: 23 RPDGRELGEFRTTTVNIGSISTADGSALVKLGNTTVICGVKAEFAAPST-DAPDKGYVVP 81
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGS---RQIIIDCDV 118
+ P + Q + + DL + D
Sbjct: 82 NVDLPPLCSSRFRSGPPGEEAQVASQFIADVIENSQIIQKEDLCISPGKLVWVLYCDLIC 141
Query: 119 IQADGGTRTAAITGAWVALHDCLQHME---------DCSNKFQLSQVLKGHVAAISCGML 169
+ DG A AL + + + K + ++ H A S +
Sbjct: 142 LDYDGNILDACTFALLAALKNVQLPEVTINEETALAEVNLKKKSYLNIRTHPVATSFAVF 201
Query: 170 CGY-PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIA 228
IVD E+ VM + G + + + ++ A R
Sbjct: 202 DDTLLIVDPTGEEEHLATGTLTIVMDEEGKLCCLHKPG--IGLTGAKLQDCMSRAVTRHK 259
Query: 229 DLIKLQKDVISN 240
++ KL +VI +
Sbjct: 260 EVKKLMDEVIKS 271
>gi|332141239|ref|YP_004426977.1| polyribonucleotide nucleotidyltransferase [Alteromonas macleodii
str. 'Deep ecotype']
gi|327551261|gb|AEA97979.1| polyribonucleotide nucleotidyltransferase [Alteromonas macleodii
str. 'Deep ecotype']
Length = 344
Score = 98.8 bits (244), Expect = 6e-19, Method: Composition-based stats.
Identities = 34/228 (14%), Positives = 73/228 (32%), Gaps = 27/228 (11%)
Query: 14 ISLTRRV-SKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----HGWITAEYGMLPR 68
++L V ++ A + L DT +L T +++ + G +P
Sbjct: 15 VTLETGVIARQATAAVLASMDDTSVLVTVVGKKEAKPDQDFFPLTVNYQEKAYAAGKIPG 74
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
R GR R+I R +R + Q+++ D T
Sbjct: 75 GFFKR------EGRPSEGETLTARLIDRPIRPLFPEGFKNEVQVVVTVMSANPDIPTDII 128
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
++ G A G + A G G I++ E + ++D
Sbjct: 129 SMIGTSAA-------------LAISGIPFNGPIGAARVGFSNGEYILNTRAEEQAESELD 175
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
T+ G ++ V+ +E S++ + +++ ++ +
Sbjct: 176 LVVAGTE-GAVLMVE--SEADVLSEETMLGAVMFGHEQLQTVVSAVNE 220
>gi|125546411|gb|EAY92550.1| hypothetical protein OsI_14290 [Oryza sativa Indica Group]
Length = 260
Score = 98.8 bits (244), Expect = 6e-19, Method: Composition-based stats.
Identities = 43/240 (17%), Positives = 82/240 (34%), Gaps = 25/240 (10%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R GR + R + + A GS +FG T ++ + + + + G +
Sbjct: 39 RADGRSFHDCRPAFMQTGPTTAASGSAYAEFGKTKVIVSVFGPRESKKAMLYSDTGRLNC 98
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
+T R QG ++E M+ +AL V L + + V+++
Sbjct: 99 NVSYTTFATPMRG--------QGTDNKEYSAMLHKALEGAVMLHTFPKTTVDVFALVLES 150
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
G I+ A +AL D M D V ++S I+D E
Sbjct: 151 GGSDLPIIISCASLALADAGIMMYDL-------------VTSVSVSCFGKNIIIDPTSDE 197
Query: 182 DSTIDVDANF-VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
++ D M I ++ + E +S + L D + L + ++ + +
Sbjct: 198 EAWQDGSLMVAYMPARKEITQLTLTGE---WSDGKITNAVELCMDACSKLCDILREHLKD 254
>gi|14601411|ref|NP_147948.1| exosome complex RNA-binding protein Rrp42 [Aeropyrum pernix K1]
gi|29337018|sp|Q9YC05|ECX2_AERPE RecName: Full=Probable exosome complex exonuclease 2
gi|5105129|dbj|BAA80443.1| exosome complex exonuclease Rrp42 homologue [Aeropyrum pernix K1]
Length = 276
Score = 98.4 bits (243), Expect = 8e-19, Method: Composition-based stats.
Identities = 44/255 (17%), Positives = 88/255 (34%), Gaps = 24/255 (9%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R R R + + + + AEGS LVK G T ++ P + G +T
Sbjct: 28 RPGDRDLKTPRNVKIETGIIEKAEGSALVKLGKTQVIAGVKAGVGAP-FKDTPNQGVLTV 86
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSA--------LGSRQII 113
+P ++ G + E+ R++ R+LR V + +
Sbjct: 87 HAEFVPLASPVFEP-----GPPDENAIELARVVDRSLREVGAVDLESLVIRPGEKVWVLW 141
Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDC---------SNKFQLSQVLKGHVAAI 164
+D +I DG A++ L + +K V +
Sbjct: 142 VDLYIIDHDGNLFDASMLATMAVLLTARLPRYEESETGEIIISKEGEGEELKVKTRVVTV 201
Query: 165 SCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAK 224
+ + Y +VD + E++ DV + ++G IV +Q + + ++ M+ +
Sbjct: 202 TTAKIDRYIVVDPNIEEEAVSDVRLVTAVDENGRIVGLQKTG-MGSLTEADIETMIGYSL 260
Query: 225 DRIADLIKLQKDVIS 239
+ K ++ I
Sbjct: 261 EASKVYFKALEEAIK 275
>gi|167464772|ref|ZP_02329861.1| ribonuclease PH [Paenibacillus larvae subsp. larvae BRL-230010]
Length = 80
Score = 98.0 bits (242), Expect = 9e-19, Method: Composition-based stats.
Identities = 37/74 (50%), Positives = 54/74 (72%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR GRQ N++R + +T +K+AEGS L++ GDT ++ TAT+EE+VP +++N GW+T
Sbjct: 1 MRADGRQPNELRPVRITPNYNKHAEGSVLIEVGDTKVICTATIEERVPPFLKNEGKGWVT 60
Query: 61 AEYGMLPRSTGNRV 74
AEY MLPR+T R
Sbjct: 61 AEYSMLPRATQVRN 74
>gi|221113409|ref|XP_002164788.1| PREDICTED: similar to predicted protein [Hydra magnipapillata]
Length = 258
Score = 98.0 bits (242), Expect = 1e-18, Method: Composition-based stats.
Identities = 53/240 (22%), Positives = 77/240 (32%), Gaps = 19/240 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R GR EN++R + L A GS V+ DT L+ P + + G I
Sbjct: 35 RQDGRGENEIRPMYLKAGTIHQANGSSYVETCDTKLICAVYGPRDNPKRHQFSSKGNIFC 94
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
E P S RV + + E I +A S V L + QI I ++++
Sbjct: 95 EVTFAPFSWHERVSNQDSLSK------EYSSAIVQAFESAVCLESYPKAQIDIYINILEY 148
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
G + A A +AL D M D + A S VD E
Sbjct: 149 SGNCLSYAFIAASIALADAGIEMLDLVTSCES---------AFSNETSIQRVCVDPSGEE 199
Query: 182 DSTIDVDANF-VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
S M I + E + D + + + K K+ I N
Sbjct: 200 VSLCKGRVVIAYMPSLNKISYLSMQGEE---TIDDSMQNVITCIEGCLRIYKYMKECIMN 256
>gi|114765824|ref|ZP_01444917.1| polyribonucleotide nucleotidyltransferase [Pelagibaca bermudensis
HTCC2601]
gi|114541823|gb|EAU44860.1| polyribonucleotide nucleotidyltransferase [Roseovarius sp.
HTCC2601]
Length = 250
Score = 98.0 bits (242), Expect = 1e-18, Method: Composition-based stats.
Identities = 28/228 (12%), Positives = 63/228 (27%), Gaps = 25/228 (10%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGN 72
++L V++ A+G+ + G+T ++ T ++ E
Sbjct: 16 LTLESGKVARQADGTVIATLGETSVMANVTFAKEPKPGQDFFPLTVHYQEKYYAAGKVP- 74
Query: 73 RVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITG 132
R + R+I R +R + ++ A+
Sbjct: 75 -GGFFKREARPTEKETLTARLIDRPIRPLFVPGFKHEVLVMCTVLSHDLVNDPDIVAMIA 133
Query: 133 AWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGED------STID 186
A A G +A G G +++ +
Sbjct: 134 ASAA-------------LTISGVPFMGPIAGARVGFEDGDYVLNPTVDDMQGLRNNPEQR 180
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
+D T ++ V+ A +++ + A ++I +I L
Sbjct: 181 LDLVVAGTKD-AVMMVESEAYE--LTEEEMLGAVTFAHEQIQPVIDLI 225
>gi|182889712|gb|AAI65543.1| Exosc8 protein [Danio rerio]
Length = 277
Score = 97.6 bits (241), Expect = 1e-18, Method: Composition-based stats.
Identities = 49/250 (19%), Positives = 82/250 (32%), Gaps = 17/250 (6%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R GR+ + R +L A+GS LVK G+T ++ E VP G++
Sbjct: 23 RPDGRELGKFRPTTLNINSISTADGSALVKIGNTTVICGIKAELAVPPS-EAQNKGYLVP 81
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRA----LRSVVDLSALGSRQIIIDCD 117
+ P + +R + + SQ I +I + L + A + D
Sbjct: 82 NVDLPPLCS-SRFRAGPPGEQAQAASQFIADVIESSDLINLEELCIEKAKLCWVLYCDIM 140
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSN----------KFQLSQVLKGHVAAISCG 167
+ DG A IT AL + K + ++ + V +
Sbjct: 141 CLDYDGNLLDACITVLLAALKTAQLPEVTINKETDLAEVDIEKKRRLKINRHPVGSSFAV 200
Query: 168 MLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRI 227
IVD E+S V + + V + S + +N A R
Sbjct: 201 FDDSIIIVDPTAEEESLSTALMTVVTDEEDRLCAVHKPG-GTSLSGEKLQHCINRAITRN 259
Query: 228 ADLIKLQKDV 237
++ KL V
Sbjct: 260 KEIRKLLDKV 269
>gi|41469640|gb|AAS07363.1| putative exoribonuclease [Oryza sativa Japonica Group]
gi|108712055|gb|ABF99850.1| 3' exoribonuclease family, domain 1 containing protein, expressed
[Oryza sativa Japonica Group]
gi|125588609|gb|EAZ29273.1| hypothetical protein OsJ_13338 [Oryza sativa Japonica Group]
gi|215768717|dbj|BAH00946.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 260
Score = 97.6 bits (241), Expect = 1e-18, Method: Composition-based stats.
Identities = 43/240 (17%), Positives = 82/240 (34%), Gaps = 25/240 (10%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R GR + R + + A GS +FG T ++ + + + + G +
Sbjct: 39 RADGRSFHDCRPAFMQTGPTTAASGSAYAEFGKTKVIVSVFGPRESKKAMLYSDTGRLNC 98
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
+T R QG ++E M+ +AL V L + + V+++
Sbjct: 99 NVSYTTFATPIRG--------QGTDNKEYSAMLHKALEGAVMLHTFPKTTVDVFALVLES 150
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
G I+ A +AL D M D V ++S I+D E
Sbjct: 151 GGSDLPIIISCASLALADAGIMMYDL-------------VTSVSVSCFGKNIIIDPTSDE 197
Query: 182 DSTIDVDANF-VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
++ D M I ++ + E +S + L D + L + ++ + +
Sbjct: 198 EAWQDGSLMVAYMPARKEITQLTLTGE---WSDGKITNAVELCMDACSKLCDILRERLKD 254
>gi|149064770|gb|EDM14921.1| exosome component 8 (predicted), isoform CRA_a [Rattus norvegicus]
Length = 276
Score = 97.6 bits (241), Expect = 1e-18, Method: Composition-based stats.
Identities = 41/252 (16%), Positives = 78/252 (30%), Gaps = 15/252 (5%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R GR+ + R ++ A+GS LVK G+T ++ E P + G++
Sbjct: 23 RPDGRELGEFRTTTVNIGSISTADGSALVKLGNTTVICGVKAEFAAPP-VDAPDRGYVVP 81
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGS---RQIIIDCDV 118
+ P + Q + + DL + D
Sbjct: 82 NVDLPPLCSSRFRTGPPGEEAQVTSQFIADVIENSQIIKKEDLCISPGKLAWVLYCDLIC 141
Query: 119 IQADGGTRTAAITGAWVALHDCLQHME---------DCSNKFQLSQVLKGHVAAISCGML 169
+ DG A AL + + + K + ++ + A S +
Sbjct: 142 LDYDGNILDACTFALLAALKNVQLPEVTINEETALAEVNLKKKSYLNVRANPVATSFAVF 201
Query: 170 CGY-PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIA 228
IVD E+ VM + G + + + + ++ A R
Sbjct: 202 DDTLLIVDPTGEEEHLSTGTLTVVMDEEGKLCCLHKPG-GSGLTGAKLQDCMSRAVTRHK 260
Query: 229 DLIKLQKDVISN 240
++ KL +VI +
Sbjct: 261 EVSKLLDEVIQS 272
>gi|156363851|ref|XP_001626253.1| predicted protein [Nematostella vectensis]
gi|156213123|gb|EDO34153.1| predicted protein [Nematostella vectensis]
Length = 276
Score = 97.6 bits (241), Expect = 1e-18, Method: Composition-based stats.
Identities = 42/255 (16%), Positives = 73/255 (28%), Gaps = 25/255 (9%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+R GR RE L A GS LVK G+T ++ T E P G+I
Sbjct: 22 IRPDGRGLFDFRETILNVGSISTANGSALVKLGNTTVVCGVTAEFAEPAA-DVPNKGFIV 80
Query: 61 AEYGMLPRSTGNRVKREAVSGRQ------------------GGRSQEIQRMIGRALRSVV 102
+ P + + Q +++ ++
Sbjct: 81 PNVDLPPLCSPSFRPGPPSEHAQVLSTFIDNLITNSQLIDLEDLCIVDGKLVWVLYIDLM 140
Query: 103 DLSALGSRQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVA 162
L G+ ++ A TR +T +D K + VA
Sbjct: 141 CLDYDGNVADAAVIAMLAALQNTRLHTVTINEETETPEPSENKDIHLKLKS-----MPVA 195
Query: 163 AISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNL 222
+ D E+ + VMT + +V V +QD ++
Sbjct: 196 VTFGIFDDDHIYCDPTDEEERLASGKVSVVMTTNNKVVAVHKPG-GPPLTQDKLQECFDV 254
Query: 223 AKDRIADLIKLQKDV 237
R+ ++ +L
Sbjct: 255 TTGRVLEVQQLIDAA 269
>gi|47227071|emb|CAG00433.1| unnamed protein product [Tetraodon nigroviridis]
Length = 275
Score = 97.6 bits (241), Expect = 1e-18, Method: Composition-based stats.
Identities = 46/253 (18%), Positives = 77/253 (30%), Gaps = 17/253 (6%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R GR+ + R +L A+GS LVK G+T ++ E P + G+I
Sbjct: 23 RPDGRELLEFRPTTLNIGSISTADGSALVKVGNTTIICGIKAELANP-TVEAPGKGYIVP 81
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQ----EIQRMIGRALRSVVDLSALGSRQIIIDCD 117
+ P + Q I + ++ L + D
Sbjct: 82 NVDLPPLCSSRFRPGPPGEQAQACSQFIADLIESSEIIQPEDLCIERGKLC-WVLYCDLM 140
Query: 118 VIQADGGTRTAAITGAWVALHDCLQH----------MEDCSNKFQLSQVLKGHVAAISCG 167
+ DG R A + AL K + + K V + C
Sbjct: 141 CLDYDGNLRDACVIALLAALKITQLPEAIISTETCLPVVDLEKKRGLNIRKHPVGSSFCI 200
Query: 168 MLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRI 227
IVD E++ V + + V + S + +N A R
Sbjct: 201 FDESTLIVDPTDEEENLSTAQITVVTDEGDGLCAVHKPG-GVSLSGEKLQECINRATVRQ 259
Query: 228 ADLIKLQKDVISN 240
++ KL VI++
Sbjct: 260 KEIQKLIDKVINS 272
>gi|50550057|ref|XP_502501.1| YALI0D06776p [Yarrowia lipolytica]
gi|49648369|emb|CAG80689.1| YALI0D06776p [Yarrowia lipolytica]
Length = 287
Score = 97.6 bits (241), Expect = 1e-18, Method: Composition-based stats.
Identities = 47/242 (19%), Positives = 85/242 (35%), Gaps = 21/242 (8%)
Query: 1 MRLSGRQENQMREISLTRRVSK-YAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWI 59
+R GR+ N++R A+GS V++G T ++ T + T I
Sbjct: 58 LRTDGRRWNEIRNFDCKINTHPTSADGSSYVEWGHTKVVCTVDGPREPDNRQNTTDRAVI 117
Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119
+ + ST R+KR+ R + I++++ A V QI ++ VI
Sbjct: 118 SVNVNVASFSTETRIKRQRNDKRLAEMNILIRQLLEEA----VLTKLNPRTQIAVNITVI 173
Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179
DGG A I A +A+ D + D V+A S G+ ++DL+
Sbjct: 174 AQDGGLLPACINAACLAMIDAGVPLTDY-------------VSACSSGVYSNNALIDLNT 220
Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
E+ + V+ S I + +L + + + +
Sbjct: 221 LEEQDVPFLTIGVIGKSDKISMLTL---ETQLPMASLEPVLATSLSGAHAIQDIMDAAVR 277
Query: 240 NE 241
Sbjct: 278 KH 279
>gi|254168333|ref|ZP_04875178.1| 3' exoribonuclease family, domain 1 protein [Aciduliprofundum
boonei T469]
gi|197622614|gb|EDY35184.1| 3' exoribonuclease family, domain 1 protein [Aciduliprofundum
boonei T469]
Length = 226
Score = 97.2 bits (240), Expect = 2e-18, Method: Composition-based stats.
Identities = 38/202 (18%), Positives = 69/202 (34%), Gaps = 8/202 (3%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R+ GR +++R +++T+ AEGS LV G+T +L +E P + G +T
Sbjct: 28 RVDGRHFDEIRNLTVTKGYIPRAEGSALVNLGNTRVLVGVKIEPGTP-FPDTPNMGILTT 86
Query: 62 EYGMLPRSTGNRVKREAVSG-----RQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
+ P ++ R R I L +V + ID
Sbjct: 87 NAELAPLASPTFEPGPPGEEAIELARVVDRGIREGHAID--LEKLVIEEGEKVWIVFIDI 144
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
V+ DG AA GA AL + ++ + ++ + + + D
Sbjct: 145 HVLDYDGNLFDAAGYGALAALTNATVPASRYDLGEDFKLPVQHYPVPVTFAKIGDWIVAD 204
Query: 177 LDYGEDSTIDVDANFVMTDSGH 198
+ E+S +
Sbjct: 205 PNLDEESIASARLTVATNEEEK 226
>gi|213407144|ref|XP_002174343.1| exosome complex exonuclease RRP41 [Schizosaccharomyces japonicus
yFS275]
gi|212002390|gb|EEB08050.1| exosome complex exonuclease RRP41 [Schizosaccharomyces japonicus
yFS275]
Length = 243
Score = 97.2 bits (240), Expect = 2e-18, Method: Composition-based stats.
Identities = 54/241 (22%), Positives = 86/241 (35%), Gaps = 21/241 (8%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKV-PMWIRNTKHGWI 59
+R GR+ N+MRE V K A GS ++ G+T +L + + +I
Sbjct: 13 LRQDGRRWNEMREFDCRIGVEKTAHGSSFIQHGNTRVLCNVNGPSEPYIKGKSKQEKAFI 72
Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119
E P S +R KR R + I R + + QI I +V+
Sbjct: 73 NVELNFAPFSLIDRKKRHRSDKRIQEQC----VAIQRTFEQAIQVELYPKSQISISLNVL 128
Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179
+ DGG I A +AL D M D V + G+ ++DL+
Sbjct: 129 EDDGGAIATCINAATLALIDAGIAMVDY-------------VCCATAGIYETQVLLDLNT 175
Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
E+S I V+ G + ++ + S D F L A + + V+
Sbjct: 176 NEESDISWMTVGVLGTKGKVTYLK---QETKLSLDLFEPALTTAIAGCDHIALQMQKVVR 232
Query: 240 N 240
Sbjct: 233 Q 233
>gi|170290982|ref|YP_001737798.1| exosome complex RNA-binding protein Rrp42 [Candidatus Korarchaeum
cryptofilum OPF8]
gi|170175062|gb|ACB08115.1| 3' exoribonuclease [Candidatus Korarchaeum cryptofilum OPF8]
Length = 268
Score = 97.2 bits (240), Expect = 2e-18, Method: Composition-based stats.
Identities = 46/252 (18%), Positives = 91/252 (36%), Gaps = 23/252 (9%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R+ GR ++ R I + AEG +K G+T +L + P + G +
Sbjct: 25 RVDGRGLHEYRPIEVLNGTFTKAEGEAWLKLGETQVLVGVKADLGEP-FPDTPDKGVFVS 83
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALG--------SRQII 113
+LP ++ G + E+ R++ RA+RS + I
Sbjct: 84 NAELLPVASPTFEP-----GPPDEGAIELARVVDRAIRSADAIDLGSLVILPGKLVYMIF 138
Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMED-------CSNKFQLSQVLKGHVAAISC 166
+D V+ DG + + +AL + + + LK S
Sbjct: 139 LDMYVLDYDGNLEDSLTLASLIALGRSEIPEVELKENGEIEVKESKRKLELKDIPINFSF 198
Query: 167 GMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226
+ ++D E+S D + G + VQ TF+ + ++N+A+ +
Sbjct: 199 VKIGSKILLDPTLEEESVSDASITVAINKDGKVCSVQK--RHGTFTVEEILNIVNVARSK 256
Query: 227 IADLIKLQKDVI 238
+L ++ ++ I
Sbjct: 257 WPELARIVREAI 268
>gi|291533813|emb|CBL06926.1| ribonuclease PH [Megamonas hypermegale ART12/1]
Length = 153
Score = 97.2 bits (240), Expect = 2e-18, Method: Composition-based stats.
Identities = 76/148 (51%), Positives = 104/148 (70%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R+ R +Q+R +T+ KY GS L++ G+T ++ AT+++ VP ++R + GW+ A
Sbjct: 3 RIDRRNADQLRRFKITKYFQKYPAGSVLIETGNTKVICAATIQDGVPSFLRGSGTGWLNA 62
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
EY +LP +T R REA GRQ GR+QEIQR+IGR LRSV+D ALG R +IIDCDVIQA
Sbjct: 63 EYSLLPSATLTRSPREASRGRQNGRTQEIQRLIGRCLRSVMDFKALGERTVIIDCDVIQA 122
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSN 149
DGGTRTA+ITGA+VAL + L + + N
Sbjct: 123 DGGTRTASITGAFVALAEALATIYNPKN 150
>gi|257076445|ref|ZP_05570806.1| exosome complex RNA-binding protein Rrp42 [Ferroplasma acidarmanus
fer1]
Length = 260
Score = 97.2 bits (240), Expect = 2e-18, Method: Composition-based stats.
Identities = 38/227 (16%), Positives = 73/227 (32%), Gaps = 14/227 (6%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
RL GR REI +T A GS +V+ G T ++ +EE + + G +
Sbjct: 26 RLDGRGLQDYREIKITENFVPKAAGSAMVEIGKTKVVAGIKVEEG-DPFEDSPDSGVMAL 84
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLS------ALGSRQIIID 115
+LP + SG ++ E R++ R +R + G R +I
Sbjct: 85 NIELLPMAFPTF-----ESGPPSEQAIEYSRVVDRGIRESKMVDTSKLVIESGKRVWMIF 139
Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLS-QVLKGHVAAISCGMLCGYPI 174
D+ + + + + +I+ + +
Sbjct: 140 VDIDVLNYDGNIIDAATLAAVTALKNTVVPASKIGQKDYSLPINATPVSITMVKIGDEIV 199
Query: 175 VDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLN 221
D D E+ + + + +I +Q + FS D +
Sbjct: 200 CDPDLEEEQVSNGRITVTIAEDHNIHAMQK-GDIGEFSLDEIRKAIK 245
>gi|302798759|ref|XP_002981139.1| hypothetical protein SELMODRAFT_233636 [Selaginella moellendorffii]
gi|300151193|gb|EFJ17840.1| hypothetical protein SELMODRAFT_233636 [Selaginella moellendorffii]
Length = 264
Score = 97.2 bits (240), Expect = 2e-18, Method: Composition-based stats.
Identities = 61/239 (25%), Positives = 105/239 (43%), Gaps = 22/239 (9%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVP-MWIRNTKHGWI 59
+RL GR+ +MR++ V + A GS + + G+T ++ +V + +
Sbjct: 9 LRLDGRRPLEMRQLHAELGVVENANGSAMFEMGNTKVIAAVYGPHEVHNRSQQLWDRALV 68
Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119
EY M STG+R ++ + R I +I + L + + + + QI I V+
Sbjct: 69 RCEYSMAAFSTGDRRRKGKGNRRSTE----ISLVIRQTLEAAILTNLMPKSQIDIYVQVL 124
Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179
QADGGTR+A I A +AL + M D VA+ + G L G P++DL+Y
Sbjct: 125 QADGGTRSACINAAALALAEAGIPMRDL-------------VASCAAGYLNGTPLLDLNY 171
Query: 180 GEDSTIDVDANFVM-TDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
EDS D + + +Q ++ +HF + LA + + ++V
Sbjct: 172 VEDSGGGPDVTVALFPKVDKVSLLQMDSK---MPLEHFENVFQLAAEGAKAAARYMREV 227
>gi|327264085|ref|XP_003216847.1| PREDICTED: exosome complex exonuclease RRP43-like [Anolis
carolinensis]
Length = 277
Score = 97.2 bits (240), Expect = 2e-18, Method: Composition-based stats.
Identities = 42/251 (16%), Positives = 79/251 (31%), Gaps = 14/251 (5%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R GR + R ++ A+GS LVK G+T ++ E P+ ++ G+I
Sbjct: 25 RPDGRDLGEFRTTTINIGSITTADGSALVKLGNTTVVCGIKAEFAAPLA-DSSNKGYIVP 83
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGS---RQIIIDCDV 118
+ P + Q + + DL + + D
Sbjct: 84 NVDLPPLCSSRFRPGPPGEEAQAASQFVADVIENSQVVMKEDLCIVDGKIAWVLYCDIIC 143
Query: 119 IQADGGTRTAAITGAWVALHDCLQHME---------DCSNKFQLSQVLKGHVAAISCGML 169
+ DG A + AL + + + K ++ ++ A S +
Sbjct: 144 LDYDGNLLDACMCAFLAALRNVQLPAVTINEETGLAEVNLKEKIPLTIRKEPVATSFILF 203
Query: 170 CGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIAD 229
IVD E+ V + G + V + + ++ A R +
Sbjct: 204 DTVMIVDPTAEEEDLATGMLTIVTDEEGKLCSVHKPG-GSALTGAKLQDCISRATARYKE 262
Query: 230 LIKLQKDVISN 240
+ KL VI +
Sbjct: 263 VKKLIDKVIKS 273
>gi|312090436|ref|XP_003146614.1| 3' exoribonuclease [Loa loa]
gi|307758222|gb|EFO17456.1| 3' exoribonuclease [Loa loa]
Length = 634
Score = 97.2 bits (240), Expect = 2e-18, Method: Composition-based stats.
Identities = 35/236 (14%), Positives = 75/236 (31%), Gaps = 54/236 (22%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R GR+ +++R + + V K GS L + G T + +T T + + + +
Sbjct: 284 RCDGRKFDELRPVDIKMDVHKKLHGSALFQRGQTQVFSTVTFDAPSAAFQPDALSQLL-- 341
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
+ + CDV+++
Sbjct: 342 --------------------------------------------EDFPYCLRLACDVLES 357
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
+G + A++ +AL D M+ + + + I + D++ E
Sbjct: 358 NGSSSMASVCAGCLALLDAGVQMKTPAAGVAMGLI-------IDKERNDYRILTDINGLE 410
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
D D+D T G +Q + + L A++ + L++L +
Sbjct: 411 DFAGDMDFKIAGTVRG-YTAMQLDLKVPGIKPEVMMESLEQARNGLEHLLQLMRKA 465
>gi|302672677|ref|XP_003026026.1| hypothetical protein SCHCODRAFT_80065 [Schizophyllum commune H4-8]
gi|300099706|gb|EFI91123.1| hypothetical protein SCHCODRAFT_80065 [Schizophyllum commune H4-8]
Length = 259
Score = 96.8 bits (239), Expect = 2e-18, Method: Composition-based stats.
Identities = 55/240 (22%), Positives = 91/240 (37%), Gaps = 21/240 (8%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRN-TKHGWIT 60
R GR++ ++R++++ A+GS LV G T +L + + ++ I
Sbjct: 14 RSDGRKQYELRDMTIDLSPRASADGSALVSHGLTQVLVSVYGPREPKQRSQSAHDRATIN 73
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
E G P S+G R KR R+QE+ + + VV S I + ++Q
Sbjct: 74 VEVGTAPFSSGERRKRGRGDK----RTQELCYTVQQTFEPVVLTSIYPRSTIDVFITILQ 129
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
DG A I +AL + D V A+S G+ ++DL
Sbjct: 130 QDGSLIPACINATTLALICAGVPLLDF-------------VCAVSAGVHDTESMLDLTTL 176
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
E++ + VM +G +V V F M +A D L + K I +
Sbjct: 177 EENDLPWVNAAVMPKTGKVVMV---GLETRLHVQRFEEMFRIALDAAKVLHQEMKAAIQD 233
>gi|148691867|gb|EDL23814.1| polyribonucleotide nucleotidyltransferase 1, isoform CRA_b [Mus
musculus]
Length = 551
Score = 96.8 bits (239), Expect = 2e-18, Method: Composition-based stats.
Identities = 37/168 (22%), Positives = 62/168 (36%), Gaps = 14/168 (8%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE--------EKVPMWIRN 53
R GR +R IS + K GS L + G T +L T T + +++ I
Sbjct: 362 RCDGRDLTSLRNISCEVDMFKTLHGSALFQRGQTQVLCTVTFDSLESSIKSDQIITAING 421
Query: 54 TKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQII 113
K Y P +T K V+ R+ G +AL V+ I
Sbjct: 422 VKDKNFMLHYEFPPYATNETGKVTGVNRRELGHGAL----AEKALCPVIPKDFPF--TIR 475
Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHV 161
+ +V++++G + A+ G +AL D + + V K +
Sbjct: 476 VTSEVLESNGSSSMASACGGSLALMDAGVPISSAVAGVAVGLVTKTNP 523
Score = 69.9 bits (169), Expect = 3e-10, Method: Composition-based stats.
Identities = 40/218 (18%), Positives = 77/218 (35%), Gaps = 25/218 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTA---TLEEKVPMWIRNTKHGWITAEYGMLP 67
R++ ++ ++++A+G +++ GDT ++ TA T + A G +P
Sbjct: 58 RKLEISSGKLARFADGCAVIQSGDTAVMVTAVSKTKASPSQFMPLVVDYRQKAAAAGRIP 117
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
+ R R R+I R++R + Q++ + +
Sbjct: 118 TNYLRREIGS------SDREVLTSRVIDRSIRPLFPAGYFYDTQVLCNLLAVDGINEPDI 171
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
A+ GA VA G V A+ GM+ G +V+ E S+ +
Sbjct: 172 LAVNGASVA-------------LSLSDIPWNGPVGAVRIGMIDGECVVNPTRREMSSSTL 218
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKD 225
+ IV ++ SAE Q F + +
Sbjct: 219 NLVVAGAPKSQIVMLEASAEN--ILQQDFCHAIKVGVK 254
>gi|213852747|ref|ZP_03382279.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Typhi str. M223]
Length = 325
Score = 96.8 bits (239), Expect = 2e-18, Method: Composition-based stats.
Identities = 38/232 (16%), Positives = 76/232 (32%), Gaps = 27/232 (11%)
Query: 14 ISLTRRV-SKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----HGWITAEYGMLPR 68
++L + ++ A + +V DT + T ++K + T G +P
Sbjct: 26 VTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVNYQERTYAAGRIPG 85
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
S R GR I R+I R +R + + Q+I +
Sbjct: 86 SFFRR------EGRPSEGETLIARLIDRPVRPLFPEGFVNEVQVIATVVSVNPQVNPDIV 139
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+ GA A G + A G + +++ E +D
Sbjct: 140 AMIGASAA-------------LSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLD 186
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
T++ ++ V+ AE S+D + ++ +I+ D++
Sbjct: 187 LVVAGTEA-AVLMVESEAEL--LSEDTMLGAVVFGHEQQQVVIQAINDLVKE 235
>gi|297803352|ref|XP_002869560.1| hypothetical protein ARALYDRAFT_492045 [Arabidopsis lyrata subsp.
lyrata]
gi|297315396|gb|EFH45819.1| hypothetical protein ARALYDRAFT_492045 [Arabidopsis lyrata subsp.
lyrata]
Length = 256
Score = 96.8 bits (239), Expect = 2e-18, Method: Composition-based stats.
Identities = 41/240 (17%), Positives = 85/240 (35%), Gaps = 25/240 (10%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R GR +Q R L A GS +FG+T ++ + + + + G +
Sbjct: 34 RPDGRGFHQCRPALLQTGAVSSASGSAYAEFGNTKVIVSVFGPRESKKAMVFSDVGRLNC 93
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
++ QG +E M+ +AL V+ + + + V+++
Sbjct: 94 NVSYTTFASPT--------LGQGTDHKEYSSMLHKALEGVIIMETFPKTTVDVFALVLES 145
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
G + I+ A +AL D M D + A+S + ++D E
Sbjct: 146 GGSDLSVVISCASLALADAGIMMYDL-------------ITAVSVSCIGKSLMIDPVTEE 192
Query: 182 DSTID-VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
+ D M I ++ + E ++ + + L D + L ++ +D++
Sbjct: 193 EGCEDGSFMMTCMPSRYEITQLTVTGE---WTTPNINEAMQLCLDACSKLGEIMRDLLKQ 249
>gi|167536393|ref|XP_001749868.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163771583|gb|EDQ85247.1| predicted protein [Monosiga brevicollis MX1]
Length = 629
Score = 96.5 bits (238), Expect = 3e-18, Method: Composition-based stats.
Identities = 36/241 (14%), Positives = 70/241 (29%), Gaps = 11/241 (4%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT-LEEKVPMWIRNTKHGWIT 60
R+ GR ++++ + + G+ L + G+T + TAT + + +
Sbjct: 355 RIDGRDFDEVQAVQAAINLYPELHGNSLFQRGETQVFCTATLGDRDAVKRLDEIEVAVAG 414
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQE----IQRMIGRALRSVVDLSALGSRQIIIDC 116
R + RAL ++D + +
Sbjct: 415 LSPQKSFFFDYEFPAYAINKIRVRRGQMRRETGHGSLAERALGRMIDPGY--ENTVRVTS 472
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
V + G + A++ G +A+ D + V + + D
Sbjct: 473 QVTSSFGSSSMASVCGGSLAMMDAGVPLRAPVAGLSCGLVGYTDEEGQ---LTKYQLLTD 529
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
L ED +D T SG + +Q E S D + D ++K
Sbjct: 530 LKGFEDIYGAMDLKMASTQSG-VNAIQFDTELRGISLDVLEEAMQRTFDGKQVVLKEMNA 588
Query: 237 V 237
Sbjct: 589 A 589
Score = 40.6 bits (93), Expect = 0.20, Method: Composition-based stats.
Identities = 34/231 (14%), Positives = 66/231 (28%), Gaps = 33/231 (14%)
Query: 24 AEGS---CLVKFGDTHLLT-----TATLEEKVP----------MWIRNTKHGWITAEYGM 65
A GS G L TL++ P ++ + +
Sbjct: 44 ATGSHEPATFTCG---ALAYQADGAVTLDQACPLHSTPSPFLTPLLQQVDYRERGTAVNL 100
Query: 66 LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125
+P+S R + R + R++ R+LR +V S Q+ + QA
Sbjct: 101 IPKSFHRREGG------ERDRETLVARLVDRSLRPLVPSDVAASTQMTVKLLASQARMEP 154
Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185
+I A AL +V ++ +++ D+ E +
Sbjct: 155 TVQSIEAASAALMVSDISWHGP---VAAVRVGVRKALEVASDDEPYELLINPDHKETAEC 211
Query: 186 DVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ +G V + L A I ++ Q++
Sbjct: 212 VGVLLYSGVQAGA-VMIDFEGAELPLPA--LKRALRAAHQHIQPSLEAQRE 259
>gi|198427597|ref|XP_002131069.1| PREDICTED: similar to LOC495942 protein [Ciona intestinalis]
Length = 247
Score = 96.5 bits (238), Expect = 3e-18, Method: Composition-based stats.
Identities = 41/244 (16%), Positives = 86/244 (35%), Gaps = 22/244 (9%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT---KHGW 58
R GR+ +++R + V A+GS ++ G+T +L + +R+ +
Sbjct: 13 RFDGRKPSELRRVRCNMGVFTQADGSAYIEQGNTKVLAAIYGPHEASNNMRSRVCLDKCF 72
Query: 59 ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDV 118
I E+ S+ R K R + +++ I + + V QI I V
Sbjct: 73 INCEFSQAMFSSAERKK----RSRGDRKGKDMSAHIKQTFEAAVRTQLYPRSQIDIYLQV 128
Query: 119 IQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLD 178
+ +DG A + A +AL D M+D S + + I+
Sbjct: 129 LHSDGSLYCACVNAATLALIDAGIAMKDYVCACSASLTKETSLIDINHV----------- 177
Query: 179 YGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
E + + +M I+ + + QD +++ + D+ + +
Sbjct: 178 -EELAGCAEFSAAIMPKLDQIIYSELNGR---IHQDELGQLVDAVTNGCKDIFAVIDRFV 233
Query: 239 SNEV 242
+ +
Sbjct: 234 RSRL 237
>gi|115474519|ref|NP_001060856.1| Os08g0116800 [Oryza sativa Japonica Group]
gi|50725627|dbj|BAD33094.1| putative ribonuclease PH [Oryza sativa Japonica Group]
gi|113622825|dbj|BAF22770.1| Os08g0116800 [Oryza sativa Japonica Group]
gi|125559948|gb|EAZ05396.1| hypothetical protein OsI_27604 [Oryza sativa Indica Group]
gi|125601990|gb|EAZ41315.1| hypothetical protein OsJ_25825 [Oryza sativa Japonica Group]
gi|215686578|dbj|BAG88831.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 262
Score = 96.5 bits (238), Expect = 3e-18, Method: Composition-based stats.
Identities = 40/240 (16%), Positives = 79/240 (32%), Gaps = 25/240 (10%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R GR + R + + A GS +FG T ++ + + + + G +
Sbjct: 41 RADGRSFHDCRPAFMQTGPTTAASGSAYAEFGKTKVIVSVFGPRESKKAMLYSDTGRLNC 100
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
+T R + E M+ +AL V L + + V+++
Sbjct: 101 NVSYTTFATPIRGQGMDNK--------EYSAMLHKALEGAVMLHTFPKTTVDVFALVLES 152
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
G I+ A +AL D + D V ++S I+D E
Sbjct: 153 GGSDLPIIISCASLALADAGIMIYDL-------------VTSVSVSCFGKNIIIDPTSDE 199
Query: 182 DSTIDVDANF-VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
++ D M I ++ + E +S + L D + L + ++ + +
Sbjct: 200 EAWQDGSIMVAYMPARKEITQLTLTGE---WSDGKITNAVELCMDACSKLCDILRERLKD 256
>gi|224132514|ref|XP_002328307.1| predicted protein [Populus trichocarpa]
gi|222837822|gb|EEE76187.1| predicted protein [Populus trichocarpa]
Length = 263
Score = 96.5 bits (238), Expect = 3e-18, Method: Composition-based stats.
Identities = 47/240 (19%), Positives = 82/240 (34%), Gaps = 25/240 (10%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R GR +Q R A GS +FG+T ++ + + + + G +
Sbjct: 41 RSDGRGFHQCRSAFFRTGAVNSAAGSAYAEFGNTKVIVSVFGPRESKKAMMYSDKGKLNC 100
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
+T QG ++E M+ +AL V L + + V+++
Sbjct: 101 NVSYTTFAT--------TVHGQGSDNKEFSTMLHKALEGAVMLETFPKTTVDVFALVLES 152
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
G I+ A +AL D M D VA +S L I+D E
Sbjct: 153 GGSDLPVVISCASLALADAGIMMYDL-------------VAGVSVSCLGRNLIIDPTLEE 199
Query: 182 DSTIDVDANF-VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
+S D M I ++ + E +S + + L D + L K+ + +
Sbjct: 200 ESFQDGSLMITCMPSHYEITQLTITGE---WSTANLNEAMQLCLDACSKLAKILRSCLKE 256
>gi|167043480|gb|ABZ08177.1| putative 3' exoribonuclease family, domain 1 [uncultured marine
microorganism HF4000_APKG2H5]
Length = 264
Score = 96.1 bits (237), Expect = 3e-18, Method: Composition-based stats.
Identities = 49/239 (20%), Positives = 80/239 (33%), Gaps = 4/239 (1%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R SGR + R+ L V AEGS V+ GDT + L+ VP R + G + +
Sbjct: 23 RHSGRGRWEARDTELEIGVLPRAEGSARVRMGDTIVYAGVKLQIMVPYPDRPNQGGLMCS 82
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGS--RQIIIDCDVI 119
+ + GR + + G Q+I+D I
Sbjct: 83 AEVRPVAGPNWEPGPPSPESIELGRVVDRGIRESGCIDVDGLCLIPGEKAWQVILDLFAI 142
Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSN-KFQLSQVLKGHVAAISCGMLCGYPIVDLD 178
DG A A+ + E + S + G + D D
Sbjct: 143 SDDGNLFDAFALAGIAAMRTAMIPEERFEISGEDRPLNISKTPIMCSYHKVGGRFVYDAD 202
Query: 179 YGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
E+ D + + D GH+ +Q R F+ F ++ A+ R +L ++ V
Sbjct: 203 GREELGGDERIHITLGDDGHVHSLQK-GLRGIFTASEFTEIMEHAQSRCNELREMVSKV 260
>gi|242007204|ref|XP_002424432.1| Exosome complex exonuclease RRP43, putative [Pediculus humanus
corporis]
gi|212507832|gb|EEB11694.1| Exosome complex exonuclease RRP43, putative [Pediculus humanus
corporis]
Length = 276
Score = 96.1 bits (237), Expect = 3e-18, Method: Composition-based stats.
Identities = 44/254 (17%), Positives = 78/254 (30%), Gaps = 16/254 (6%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+R GR ++ R IS+ A+GS +VK G+T ++ LE P G++
Sbjct: 22 VRPDGRALDECRPISINVNSFHNADGSAIVKIGNTAVVCGVKLELAKPKA-ETPDQGYLI 80
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGS---RQIIIDCD 117
+ P +G Q + ++ + L + I +D
Sbjct: 81 PNVDLPPLCSGQYQPGPPCDYAQEATKFVNEILLESQCIDLKALCIVPDRLAWVIYLDII 140
Query: 118 VIQADGGTRTAAITGAWVALHDCLQH----MEDCSNKFQLSQ------VLKGHVAAISCG 167
+ DG AA+ AL + K V K ++
Sbjct: 141 CLNQDGNLLDAALAAGIAALKVTTLPEVIYNVESGEKVVNPLKRQQLNVKKLPLSTTIAV 200
Query: 168 MLCGYPIVDLDYGEDSTIDVDA-NFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226
++D E+S + DSG I + + A+ +
Sbjct: 201 FKSDCLLIDPTVEEESFSSGTISIVIEADSGDICGIHQPGTE-PLKPSEIDFCITQAQVK 259
Query: 227 IADLIKLQKDVISN 240
+ +L K I N
Sbjct: 260 TKAVAELIKTAIKN 273
>gi|306836337|ref|ZP_07469316.1| polyribonucleotide nucleotidyltransferase [Corynebacterium accolens
ATCC 49726]
gi|304567772|gb|EFM43358.1| polyribonucleotide nucleotidyltransferase [Corynebacterium accolens
ATCC 49726]
Length = 493
Score = 96.1 bits (237), Expect = 4e-18, Method: Composition-based stats.
Identities = 29/134 (21%), Positives = 52/134 (38%), Gaps = 8/134 (5%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKH 56
R+ GR +R++S+ + A GS L + G+T +L TL+ E+ + +
Sbjct: 364 FRIDGRGLTDIRDLSVEVDLVPRAHGSSLFERGETQILGVTTLDMLKMEQQIDSLTPIES 423
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P STG + + R+ G RAL V+ I
Sbjct: 424 KRYMHHYNFPPFSTGETGRVGSPKRREIGHGAL----AERALLPVIPSREDFPYAIRQVS 479
Query: 117 DVIQADGGTRTAAI 130
+ + ++G T ++
Sbjct: 480 EALGSNGSTSMGSV 493
Score = 72.2 bits (175), Expect = 6e-11, Method: Composition-based stats.
Identities = 40/240 (16%), Positives = 66/240 (27%), Gaps = 22/240 (9%)
Query: 12 REISLTRR-VSKYAEGSCLVKF-GDTHLLTTATLEEKV----PMWIRNTKHGWITAEYGM 65
R + +++ A+GS DT LL T T + + G
Sbjct: 32 RTVRFETGQLARQADGSVTTYLDDDTMLLATTTASNQPRENFDFFPLTVDVEERMYAAGK 91
Query: 66 LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125
+P S R GR + R+I R LR Q++I +
Sbjct: 92 IPGSFFRR------EGRPSTEAILACRLIDRPLRPTFVKGLRNEVQVVITVLSQDPEEYY 145
Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185
AI GA A + +++ + + + E
Sbjct: 146 DVVAINGASAATQLSGLPVSGAVGGVRMALIADDKHPEGQWVAFPNHEQHERALFEMVVA 205
Query: 186 DVDANFVMTDSGHIVEVQGS---------AERATFSQD-HFFAMLNLAKDRIADLIKLQK 235
+ I+ V+ A+ A Q+ L AK I L + Q
Sbjct: 206 GRIVTKGRKEDVAIMMVEAGAGTNVAERIADGAPAPQEAAVAEGLEAAKPFIKTLCEAQN 265
>gi|225435349|ref|XP_002285257.1| PREDICTED: hypothetical protein [Vitis vinifera]
gi|147834996|emb|CAN61380.1| hypothetical protein VITISV_037546 [Vitis vinifera]
gi|297746275|emb|CBI16331.3| unnamed protein product [Vitis vinifera]
Length = 254
Score = 96.1 bits (237), Expect = 4e-18, Method: Composition-based stats.
Identities = 41/241 (17%), Positives = 83/241 (34%), Gaps = 25/241 (10%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+R GR +Q R L A GS +FG+T ++ + + + + G +
Sbjct: 31 VRPDGRGFHQCRPAFLKTGAVNAASGSAYAEFGNTKVIVSVFGPRESKKAMAYSGTGRLN 90
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
+ R QG + M+ +AL + + + + + V++
Sbjct: 91 CNVSYTTFAMPIRG--------QGSDHKGYSSMLHKALEGAIIVESFPKTTVDVFALVLE 142
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
+ G I+ A +AL D M D VA++S L ++D
Sbjct: 143 SGGSDLPVVISCASLALADAGIMMYDL-------------VASVSVSCLGKNLVIDPILE 189
Query: 181 EDSTIDVDANF-VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
E+S D M + ++ + E +S + + + + L K+ + +
Sbjct: 190 EESYQDGSLLITCMPSRNEVTQLTVNGE---WSTPRVHEAMQICLEACSKLAKIIRSCLK 246
Query: 240 N 240
Sbjct: 247 E 247
>gi|326514708|dbj|BAJ99715.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 262
Score = 96.1 bits (237), Expect = 4e-18, Method: Composition-based stats.
Identities = 44/240 (18%), Positives = 85/240 (35%), Gaps = 25/240 (10%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R GR + R + + A GS +FG T ++ + + + + G +
Sbjct: 40 RADGRSLHDCRPAFMQTGPTTAASGSAYAEFGKTKVIVSVFGPRESKKAMLYSDTGRLNC 99
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
+TG R QG ++E M+ +AL V L + + V+++
Sbjct: 100 SVSYTTFATGIRG--------QGLENKEYSGMLHKALEGAVMLHTFPKTTVDVFALVLES 151
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
G I+ A +AL D M D V ++S L I+D E
Sbjct: 152 GGSDLPIIISCASLALADAGIMMYDL-------------VTSVSVSCLGKNVIIDPTSDE 198
Query: 182 DSTIDVDANF-VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
++ D M I ++ + E ++ + L D + L ++ ++ + +
Sbjct: 199 EAWQDGGLMVSYMPARKEITQLTLTGE---WTDGKITNAVELCMDACSKLCEILRERLKD 255
>gi|255644780|gb|ACU22892.1| unknown [Glycine max]
Length = 190
Score = 95.7 bits (236), Expect = 5e-18, Method: Composition-based stats.
Identities = 44/147 (29%), Positives = 70/147 (47%), Gaps = 5/147 (3%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVP-MWIRNTKHGWI 59
+RL GR+ +MR+I A+GS + + G+T ++ +V + + H +
Sbjct: 9 LRLDGRRPMEMRQIRAEIGAVSKADGSAIFEMGNTKVIAAVYGPREVQNRNQQISSHALV 68
Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119
EY M STG+R+++ R I +I + + + + L QI I V+
Sbjct: 69 RCEYSMANFSTGDRMRKPKGDRRSTE----ISLVIRQTMEACILTHLLPRSQIDIYVQVL 124
Query: 120 QADGGTRTAAITGAWVALHDCLQHMED 146
QADGGTR+A I A +AL D M D
Sbjct: 125 QADGGTRSACINAATLALADAGIPMRD 151
>gi|56118510|ref|NP_001007919.1| exosome component 8 [Xenopus (Silurana) tropicalis]
gi|51513372|gb|AAH80360.1| exosc8 protein [Xenopus (Silurana) tropicalis]
gi|89269528|emb|CAJ82996.1| exosome component 8 [Xenopus (Silurana) tropicalis]
Length = 276
Score = 95.7 bits (236), Expect = 5e-18, Method: Composition-based stats.
Identities = 37/252 (14%), Positives = 75/252 (29%), Gaps = 15/252 (5%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R GR+ + R ++ A+GS LVK G+ +L E P G++
Sbjct: 23 RPDGRELTEFRTTTINVGSITTADGSALVKLGNCTVLCGVKAEFTAPPA-DAPNKGYVVP 81
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQ-RMIGRALRSVVDLSALGS--RQIIIDCDV 118
+ P + Q + L A G + D
Sbjct: 82 NVDLTPLCSSQFRPGPPGEEAQVASQFIADVIDNSQMLLKEDLCIAHGKLAWVLYCDLIC 141
Query: 119 IQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVL----------KGHVAAISCGM 168
+ DG + AL + + + L++V K VA
Sbjct: 142 LDYDGNLLDTCMCALVAALQNVRLPSVKINEETGLAEVNLKTKHALKILKHPVATSFAVF 201
Query: 169 LCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIA 228
+ +VD E+ V + + + + + + ++ A R
Sbjct: 202 DDTFLLVDPTGEEEGLASGLLTVVTDEDERLCATRKPG-GSALAAEKLQECISRAITRHK 260
Query: 229 DLIKLQKDVISN 240
++ L ++ +++
Sbjct: 261 EVTNLLQEALAS 272
>gi|308491849|ref|XP_003108115.1| CRE-TIN-9.2 protein [Caenorhabditis remanei]
gi|308248963|gb|EFO92915.1| CRE-TIN-9.2 protein [Caenorhabditis remanei]
Length = 372
Score = 95.7 bits (236), Expect = 5e-18, Method: Composition-based stats.
Identities = 53/236 (22%), Positives = 93/236 (39%), Gaps = 11/236 (4%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
R+ GR+ Q+R I+ +++ AEGSC ++ G+T +L + R I
Sbjct: 125 FRIDGRRPAQIRNINTRLGLNRNAEGSCYLEHGNTKVLCAVYGPYEGKASKRLEDRCAIV 184
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
+Y S R R +S EI R++ +A SV+ + QI I C+VIQ
Sbjct: 185 CQYSTTTFSGLERK----NRPRGDRKSTEISRLLEKAFESVILTESFPRSQIDIFCEVIQ 240
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAA-ISCGMLCGYPIVDLDY 179
DG A + +AL D M+ ++ V + S P V +
Sbjct: 241 GDGSNLAACVNATSLALADAGIPMKGIASAATCGIVDAKPIVDLTSREETDLLPRVTVSG 300
Query: 180 GEDSTIDVDANFV---MTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
+ + + F + ++ V+ + DH +++ AK AD+ +
Sbjct: 301 FSSIILLLHSKFQLATICGRDEVILVEL---QNRLHIDHLSVVMDAAKATCADVYE 353
>gi|148703331|gb|EDL35278.1| exosome component 8, isoform CRA_f [Mus musculus]
Length = 283
Score = 95.7 bits (236), Expect = 5e-18, Method: Composition-based stats.
Identities = 40/252 (15%), Positives = 77/252 (30%), Gaps = 15/252 (5%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R GR+ + R ++ A+GS LVK G+T ++ E P + G++
Sbjct: 30 RPDGRELGEFRATTVNIGSISTADGSALVKLGNTTVICGVKAEFAAPP-VDAPDRGYVVP 88
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGS---RQIIIDCDV 118
+ P + Q + + DL + D
Sbjct: 89 NVDLPPLCSSRFRTGPPGEEAQVTSQFIADVVDNSQVIKKEDLCISPGKLAWVLYCDLIC 148
Query: 119 IQADGGTRTAAITGAWVALHDCLQHME---------DCSNKFQLSQVLKGHVAAISCGML 169
+ DG A AL + + + K + ++ + A S +
Sbjct: 149 LDYDGNILDACTFALLAALKNVQLPEVTINEETALAEVNLKKKSYLNVRTNPVATSFAVF 208
Query: 170 CGY-PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIA 228
IVD E+ V + G + + + + ++ A R
Sbjct: 209 DDTLLIVDPTGEEEHLSTGTLTVVTDEDGKLCCLHKPG-GSGLTGAKLQDCMSRAVTRHK 267
Query: 229 DLIKLQKDVISN 240
++ KL +VI +
Sbjct: 268 EVSKLLDEVIQS 279
>gi|60359866|dbj|BAD90152.1| mKIAA4013 protein [Mus musculus]
Length = 308
Score = 95.7 bits (236), Expect = 5e-18, Method: Composition-based stats.
Identities = 40/252 (15%), Positives = 77/252 (30%), Gaps = 15/252 (5%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R GR+ + R ++ A+GS LVK G+T ++ E P + G++
Sbjct: 55 RPDGRELGEFRATTVNIGSISTADGSALVKLGNTTVICGVKAEFAAPP-VDAPDRGYVVP 113
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGS---RQIIIDCDV 118
+ P + Q + + DL + D
Sbjct: 114 NVDLPPLCSSRFRTGPPGEEAQVTSQFIADVVDNSQVIKKEDLCISPGKLAWVLYCDLIC 173
Query: 119 IQADGGTRTAAITGAWVALHDCLQHME---------DCSNKFQLSQVLKGHVAAISCGML 169
+ DG A AL + + + K + ++ + A S +
Sbjct: 174 LDYDGNILDACTFALLAALKNVQLPEVTINEETALAEVNLKKKSYLNVRTNPVATSFAVF 233
Query: 170 CGY-PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIA 228
IVD E+ V + G + + + + ++ A R
Sbjct: 234 DDTLLIVDPTGEEEHLSTGTLTVVTDEDGKLCCLHKPG-GSGLTGAKLQDCMSRAVTRHK 292
Query: 229 DLIKLQKDVISN 240
++ KL +VI +
Sbjct: 293 EVSKLLDEVIQS 304
>gi|45595709|gb|AAH67250.1| Exosc8 protein [Mus musculus]
Length = 270
Score = 95.7 bits (236), Expect = 5e-18, Method: Composition-based stats.
Identities = 40/252 (15%), Positives = 77/252 (30%), Gaps = 15/252 (5%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R GR+ + R ++ A+GS LVK G+T ++ E P + G++
Sbjct: 17 RPDGRELGEFRATTVNIGSISTADGSALVKLGNTTVICGVKAEFAAPP-VDAPDRGYVVP 75
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGS---RQIIIDCDV 118
+ P + Q + + DL + D
Sbjct: 76 NVDLPPLCSSRFRTGPPGEEAQVTSQFIADVVDNSQVIKKEDLCISPGKLAWVLYCDLIC 135
Query: 119 IQADGGTRTAAITGAWVALHDCLQHME---------DCSNKFQLSQVLKGHVAAISCGML 169
+ DG A AL + + + K + ++ + A S +
Sbjct: 136 LDYDGNILDACTFALLAALKNVQLPEVTINEETALAEVNLKKKSYLNVRTNPVATSFAVF 195
Query: 170 CGY-PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIA 228
IVD E+ V + G + + + + ++ A R
Sbjct: 196 DDTLLIVDPTGEEEHLSTGTLTVVTDEDGKLCCLHKPG-GSGLTGAKLQDCMSRAVTRHK 254
Query: 229 DLIKLQKDVISN 240
++ KL +VI +
Sbjct: 255 EVSKLLDEVIQS 266
>gi|74146647|dbj|BAE41329.1| unnamed protein product [Mus musculus]
Length = 257
Score = 95.7 bits (236), Expect = 5e-18, Method: Composition-based stats.
Identities = 40/252 (15%), Positives = 77/252 (30%), Gaps = 15/252 (5%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R GR+ + R ++ A+GS LVK G+T ++ E P + G++
Sbjct: 4 RPDGRELGEFRATTVNIGSISTADGSALVKLGNTTVICGVKAEFAAPP-VDAPDRGYVVP 62
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGS---RQIIIDCDV 118
+ P + Q + + DL + D
Sbjct: 63 NVDLPPLCSSRFRTGPPGEEAQVTSQFIADVVDNSQVIKKEDLCISPGKLAWVLYCDLIC 122
Query: 119 IQADGGTRTAAITGAWVALHDCLQHME---------DCSNKFQLSQVLKGHVAAISCGML 169
+ DG A AL + + + K + ++ + A S +
Sbjct: 123 LDYDGNILDACTFALLAALKNVQLPEVTINEETALAEVNLKKKSYLNVRTNPVATSFAVF 182
Query: 170 CGY-PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIA 228
IVD E+ V + G + + + + ++ A R
Sbjct: 183 DDTLLIVDPTGEEEHLSTGTLTVVTDEDGKLCCLHKPG-GSGLTGAKLQDCMSRAVTRHK 241
Query: 229 DLIKLQKDVISN 240
++ KL +VI +
Sbjct: 242 EVSKLLDEVIQS 253
>gi|254692991|ref|NP_081424.3| exosome complex component RRP43 isoform 2 [Mus musculus]
gi|21759414|sp|Q9D753|EXOS8_MOUSE RecName: Full=Exosome complex component RRP43; AltName:
Full=Exosome component 8; AltName: Full=Ribosomal
RNA-processing protein 43
gi|22208743|emb|CAD43467.1| CBP-interacting protein 3 [Mus musculus]
gi|148703329|gb|EDL35276.1| exosome component 8, isoform CRA_d [Mus musculus]
Length = 276
Score = 95.7 bits (236), Expect = 5e-18, Method: Composition-based stats.
Identities = 40/252 (15%), Positives = 77/252 (30%), Gaps = 15/252 (5%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R GR+ + R ++ A+GS LVK G+T ++ E P + G++
Sbjct: 23 RPDGRELGEFRATTVNIGSISTADGSALVKLGNTTVICGVKAEFAAPP-VDAPDRGYVVP 81
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGS---RQIIIDCDV 118
+ P + Q + + DL + D
Sbjct: 82 NVDLPPLCSSRFRTGPPGEEAQVTSQFIADVVDNSQVIKKEDLCISPGKLAWVLYCDLIC 141
Query: 119 IQADGGTRTAAITGAWVALHDCLQHME---------DCSNKFQLSQVLKGHVAAISCGML 169
+ DG A AL + + + K + ++ + A S +
Sbjct: 142 LDYDGNILDACTFALLAALKNVQLPEVTINEETALAEVNLKKKSYLNVRTNPVATSFAVF 201
Query: 170 CGY-PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIA 228
IVD E+ V + G + + + + ++ A R
Sbjct: 202 DDTLLIVDPTGEEEHLSTGTLTVVTDEDGKLCCLHKPG-GSGLTGAKLQDCMSRAVTRHK 260
Query: 229 DLIKLQKDVISN 240
++ KL +VI +
Sbjct: 261 EVSKLLDEVIQS 272
>gi|305663899|ref|YP_003860187.1| 3' exoribonuclease [Ignisphaera aggregans DSM 17230]
gi|304378468|gb|ADM28307.1| 3' exoribonuclease [Ignisphaera aggregans DSM 17230]
Length = 286
Score = 95.7 bits (236), Expect = 5e-18, Method: Composition-based stats.
Identities = 41/257 (15%), Positives = 90/257 (35%), Gaps = 27/257 (10%)
Query: 3 LSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAE 62
+ R R + ++ A+ S L K G+T +L LE P + + G +
Sbjct: 28 VDRRPLTSYRSFEVKFNIAPNADSSVLFKLGNTQILAGVKLEVGQP-FPDSPNEGILIVN 86
Query: 63 YGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALG--------SRQIII 114
LP ++ G + E+ R+I R LR ++ + +
Sbjct: 87 AEYLPAASPTFEP-----GPPDENAIELARVIDRGLREAKVIALDKLVIVPGKRVWIVWL 141
Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNK----------FQLSQVLKGHVAAI 164
D ++ DG A+ + +AL + L +V ++
Sbjct: 142 DIYILDHDGNLIDASAMASMLALATTFIPYYEVDPLTSNVKIDRTRKLQRLPLNRYVVSV 201
Query: 165 SCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAK 224
+ + ++D E++ +++ G+IV +Q ++D +++A
Sbjct: 202 TVNKIGDLLVIDPTGEEEAIASSKLAISISEEGNIVGIQKMG-IGYVTEDDINKAIDIAL 260
Query: 225 D-RIADLIKLQKDVISN 240
I ++ + K +I+
Sbjct: 261 SIGIDNI-EKLKKIINQ 276
>gi|311266149|ref|XP_003130982.1| PREDICTED: exosome complex exonuclease RRP43-like [Sus scrofa]
Length = 276
Score = 95.7 bits (236), Expect = 5e-18, Method: Composition-based stats.
Identities = 42/252 (16%), Positives = 76/252 (30%), Gaps = 15/252 (5%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R GR+ + R ++ A+GS LVK G+T ++ E P G+I
Sbjct: 23 RPDGRELGEFRTTTVNVGSIGTADGSSLVKLGNTTVICGIKAEFGAPPT-DAPDKGYIVP 81
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGS---RQIIIDCDV 118
+ P + Q + + DL + D
Sbjct: 82 NVDLSPLCSWRFRSGPPGEEAQVASQFIADVIENSQIIQKEDLCISPGKLAWVLYCDLIC 141
Query: 119 IQADGGTRTAAITGAWVALHDCLQHME---------DCSNKFQLSQVLKGHVAAISCGML 169
+ DG A AL + + + K + ++ H A S +
Sbjct: 142 LNHDGNILDACTFALLAALKNVQLPEVNINEETALAEVNLKKKSYLNIRTHPVATSFAVF 201
Query: 170 CGY-PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIA 228
IVD E+ VM + G + + + + ++ A R
Sbjct: 202 DDTLLIVDPTEEEEHLATGTLTVVMDEEGKLCCLHKPG-GSGLTGAKLQDCMSRAVTRHK 260
Query: 229 DLIKLQKDVISN 240
++ KL +V +
Sbjct: 261 EVKKLMDEVFKS 272
>gi|37589850|gb|AAH59089.1| Exosome component 8 [Mus musculus]
Length = 276
Score = 95.7 bits (236), Expect = 5e-18, Method: Composition-based stats.
Identities = 42/252 (16%), Positives = 75/252 (29%), Gaps = 15/252 (5%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R GR+ + R ++ A+GS LVK G+T ++ E P + G++
Sbjct: 23 RPDGRELGEFRATTVNIGSISTADGSALVKLGNTTVICGVKAEFAAPP-VDAPDRGYVVP 81
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGS---RQIIIDCDV 118
+ P + Q + + DL + D
Sbjct: 82 NVDLPPLCSSRFRTGPPGEEAQVTSQFIADVVDNSQVIKKEDLCISPGKLAWVLYCDLIC 141
Query: 119 IQADGGTRTAAITGAWVALHDCLQHME---------DCSNKFQLSQ-VLKGHVAAISCGM 168
+ DG A AL + + + K + V VAA
Sbjct: 142 LDYDGNILDACTFALLAALKNVQLPEVTINEETALAEVNLKKKSYLNVRTNPVAASFAVF 201
Query: 169 LCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIA 228
IVD E+ V + G + + + + ++ A R
Sbjct: 202 DDTLLIVDPTGEEEHLSTGTLTVVTDEDGKLCCLHKPG-GSGLTGAKLQDCMSRAVTRHK 260
Query: 229 DLIKLQKDVISN 240
++ KL +VI +
Sbjct: 261 EVSKLLDEVIQS 272
>gi|111220956|ref|YP_711750.1| ribonuclease PH [Frankia alni ACN14a]
gi|111148488|emb|CAJ60159.1| ribonuclease PH [Frankia alni ACN14a]
Length = 204
Score = 95.7 bits (236), Expect = 6e-18, Method: Composition-based stats.
Identities = 92/193 (47%), Positives = 122/193 (63%), Gaps = 7/193 (3%)
Query: 46 KVPMWIRNTKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLS 105
VP W + + GW+TAEY MLPR+T R RE+V GR GGR+ EI R+IGR+LR+ +DL+
Sbjct: 4 GVPRWRKGSGLGWVTAEYSMLPRATNTRNDRESVRGRIGGRTHEISRLIGRSLRACIDLA 63
Query: 106 ALGSRQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAIS 165
ALG I IDCDV+ ADGGTRTAAITGA+VAL D + + + VAA+S
Sbjct: 64 ALGENTIAIDCDVLLADGGTRTAAITGAYVALVDAARWLGRPAAITTS-------VAAVS 116
Query: 166 CGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKD 225
G++ G P++DL Y EDST D D N V T + VEVQG+AE F + +L+LA
Sbjct: 117 VGVVRGEPMLDLAYTEDSTADTDMNVVCTGADGFVEVQGTAEGVPFDRAMLDNLLDLAVF 176
Query: 226 RIADLIKLQKDVI 238
A L ++Q + +
Sbjct: 177 GCAQLAEIQAEAL 189
>gi|72061093|ref|XP_783510.1| PREDICTED: similar to Exosome component 8 [Strongylocentrotus
purpuratus]
gi|115946756|ref|XP_001196912.1| PREDICTED: similar to Exosome component 8 [Strongylocentrotus
purpuratus]
Length = 275
Score = 95.3 bits (235), Expect = 6e-18, Method: Composition-based stats.
Identities = 38/251 (15%), Positives = 73/251 (29%), Gaps = 15/251 (5%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+R GR+ ++R L A GS LVK G+T ++ E + K G++
Sbjct: 22 VRPDGRELGEIRSTILNVGSISTAHGSALVKLGNTTVVCGIKGE-FASPTVEEPKKGYLV 80
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSV---VDLSALGSRQIIIDCD 117
+ P + Q ++ L + + D
Sbjct: 81 PNVDLPPLCSAQFKPGPPSIQAQVTSQLVADTLLSSNLLNYEDLCIKEGNMVWVLYCDMM 140
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMED----------CSNKFQLSQVLKGHVAAISCG 167
+ DG A + AL + + S + + ++ A
Sbjct: 141 CLDYDGNIIDACLIALLAALRNVRLPVVTIDEDTGLAELSSTEDRSLNIVNQFAATTFSV 200
Query: 168 MLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRI 227
+VD E+ ++T G + + S D + A+ R
Sbjct: 201 FDDSILLVDPTVEEEDLATGLMTVIVTQDGRLCNIHKPG-GTPLSTDQIQDCIGRAQTRA 259
Query: 228 ADLIKLQKDVI 238
++ L D +
Sbjct: 260 KEICSLIDDTL 270
>gi|71981632|ref|NP_001021274.1| EXOSome (multiexonuclease complex) component family member
(exos-4.1) [Caenorhabditis elegans]
gi|6226696|sp|Q17533|EXOS4_CAEEL RecName: Full=Putative exosome complex component RRP41; AltName:
Full=Ribosomal RNA-processing protein 41
gi|3873830|emb|CAA97771.3| C. elegans protein B0564.1a, confirmed by transcript evidence
[Caenorhabditis elegans]
Length = 240
Score = 95.3 bits (235), Expect = 7e-18, Method: Composition-based stats.
Identities = 53/232 (22%), Positives = 88/232 (37%), Gaps = 19/232 (8%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
R+ GR+ Q+R I+ +++ AEGSC ++ G+T +L + R I
Sbjct: 9 FRIDGRRPAQIRNINTRLGLNRNAEGSCYLEHGNTKVLCAVYGPYEGKSSKRIEDKCAIV 68
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
+Y S R R +S EI R++ +A SV+ A Q+ I C+VIQ
Sbjct: 69 CQYSATKFSGLERK----NRTRGDRKSTEISRLLEKAFESVILTEAFPRSQLDIFCEVIQ 124
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
DG A + +AL D M+ ++ V + ++
Sbjct: 125 GDGSNLAACVNATSLALADAGIPMKGIASAATCGVVDGKPIVDLTSREETD--------- 175
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
A D +VE+Q DH +++ AK AD+ +
Sbjct: 176 -LLPRVTLATICGRDEVILVELQ-----NRLHIDHLSTVMDAAKATCADVYE 221
>gi|242025392|ref|XP_002433108.1| conserved hypothetical protein [Pediculus humanus corporis]
gi|212518649|gb|EEB20370.1| conserved hypothetical protein [Pediculus humanus corporis]
Length = 278
Score = 95.3 bits (235), Expect = 7e-18, Method: Composition-based stats.
Identities = 46/242 (19%), Positives = 89/242 (36%), Gaps = 10/242 (4%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+R GR R+I + V A+GS ++ +T +L + ++P T +G I
Sbjct: 41 IRKDGRTFEDQRKIYMKTGVVTQAKGSAYLELNNTKVLVSVFEPREIPRLSEFTPNGEIY 100
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
E+ P R +++ ++ R+L V + Q+ + ++
Sbjct: 101 CEFKFAPFYGLERKGHIM-----DLEEKDLSIILKRSLEPAVCRHEFPNFQVDVYALLLD 155
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
DG +AAIT A +AL D M D ++ + + I
Sbjct: 156 NDGSCLSAAITAAGLALADAGIPMYD--ILTSVTLGIHNDMIFIDPNFEEEKFCKSFFKN 213
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
+ S I + + M + + E+ S T S + ++L + + L K + +
Sbjct: 214 KTSEIGIISLSYMPEMAQVTEITQSG---TVSINTILKSMDLLISKCKTISDLTKKCLMD 270
Query: 241 EV 242
V
Sbjct: 271 NV 272
>gi|159040755|ref|YP_001540007.1| exosome complex RNA-binding protein Rrp42 [Caldivirga
maquilingensis IC-167]
gi|157919590|gb|ABW01017.1| 3' exoribonuclease [Caldivirga maquilingensis IC-167]
Length = 279
Score = 94.9 bits (234), Expect = 8e-18, Method: Composition-based stats.
Identities = 49/237 (20%), Positives = 83/237 (35%), Gaps = 26/237 (10%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R RQ MR++++ V K A+GS LV G+T ++ E P + G +
Sbjct: 26 RPDDRQLISMRDLTIRVGVIKTADGSALVNLGNTKVIAGIKFELGKP-FEDTPNEGNLIV 84
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALG--------SRQII 113
P + G + EI R+I RALR + +
Sbjct: 85 NLETPPLAAPTFEP-----GPPDENAIEIARIIDRALRHSNYIPLRDLVIIPGKSVYSMW 139
Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHME---------DCSNKFQLSQVLKGHVAAI 164
+D V+ DG +++ A A+ + D S K L+ + +
Sbjct: 140 VDIYVLNHDGNLIDSSMLAAVSAIANAQVPRAIIDGENVKLDKSTKIPLNINPQNMPLTV 199
Query: 165 SCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLN 221
+ + Y IVD E+ D +IV +Q F+ + +M+N
Sbjct: 200 TYYKIDKYLIVDPTLEEEVMSDGRFTVASDGE-NIVALQKG--EGYFTPEEVDSMMN 253
>gi|303281836|ref|XP_003060210.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226458865|gb|EEH56162.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 245
Score = 94.9 bits (234), Expect = 8e-18, Method: Composition-based stats.
Identities = 61/244 (25%), Positives = 102/244 (41%), Gaps = 23/244 (9%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEK-VPMWIRNTKHGWI 59
+RL GR+ + R++ V A+GS + G+T ++ + V R+ + I
Sbjct: 9 LRLDGRRPKETRQMRCAMGVLPAADGSAEFRAGNTRVMCAVHGPRECVNRGERDDERAII 68
Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119
E+ STG R R R +I +AL + V + +I + V+
Sbjct: 69 KCEFSQAAFSTGERRARGKGDRRSVEL----ALVIRQALEATVLVHLAPRSEINVMIQVL 124
Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179
QADGG R AAI A +A+ + M+D AA S G L G P++DL+Y
Sbjct: 125 QADGGVRAAAINAAVLAIANAGIPMKDTM-------------AACSAGYLDGTPLLDLNY 171
Query: 180 GEDSTIDVDANFV--MTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
E+ V + + +V VQ + S + F + LA + A + K+ ++
Sbjct: 172 VEEGGGGVRVHVATHASRGDKVVVVQTDNKA---SVEVFEPVHALAVEGCAVVQKVMREA 228
Query: 238 ISNE 241
+
Sbjct: 229 MIEH 232
>gi|328773049|gb|EGF83086.1| hypothetical protein BATDEDRAFT_84610 [Batrachochytrium
dendrobatidis JAM81]
Length = 253
Score = 94.9 bits (234), Expect = 9e-18, Method: Composition-based stats.
Identities = 31/240 (12%), Positives = 69/240 (28%), Gaps = 17/240 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R R+ +Q+R I A GS ++ G+ ++ + ++ G +
Sbjct: 31 RADKRRPDQIRPIYTKAGTIPQANGSAYIETGNLKVICAVYGPRQSSSRQLSSSTGTLQC 90
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
++ P S R + +E ++ +AL + L I + V++
Sbjct: 91 DFKFAPFSGEKRKGYAK-----DDQEKEFSMVLEQALTPSIRLENYPKFTIQVFVIVLEN 145
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
DG A + +L +E S G E
Sbjct: 146 DGSMSALAAAISCASLALANAGIEMLDMVAASSIAYFGESMLCLD---------VSLKEE 196
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
M + + + + + L D + + + ++ + +E
Sbjct: 197 MVQDGAMLVSYMPSLNEVTHLIQTGLA---TTSQCTKAIELGVDACSQIHTILQEALLSE 253
>gi|89888168|gb|ABD78634.1| polyribonucleotide nucleotidyltransferase [Bordetella holmesii]
gi|89888171|gb|ABD78636.1| polyribonucleotide nucleotidyltransferase [Bordetella holmesii]
gi|89888174|gb|ABD78638.1| polyribonucleotide nucleotidyltransferase [Bordetella holmesii]
Length = 359
Score = 94.9 bits (234), Expect = 9e-18, Method: Composition-based stats.
Identities = 38/233 (16%), Positives = 78/233 (33%), Gaps = 31/233 (13%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPM----WIRNTKHGWITAEYGMLPR 68
+ L +++ A G+ LV DT +L T +K + + T G +P
Sbjct: 16 VVLETGEIARQASGAVLVSVEDTVVLATVVAAKKAKPGQTFFPLTVDYIEKTYAAGRIPG 75
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
R G+ + R+I R LR + Q++I + +
Sbjct: 76 GFFKR------EGKPSEKETLTSRLIDRPLRPLFPEDFYNEVQVVIHTLSVNPEIDPDIP 129
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+ GA A G + A G + G +++ + T +D
Sbjct: 130 AMIGASAA-------------LAISGIPFNGPIGAARVGYVDGQYVLNPTASQLKTSKMD 176
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKD----RIADLIKLQKDV 237
T++ ++ V+ A++ S++ + + + + L +D
Sbjct: 177 LVVAGTEN-AVLMVESEAQQ--LSEEIMLGGVVFGHEQMQAAVNAIHDLVRDA 226
Score = 75.7 bits (184), Expect = 6e-12, Method: Composition-based stats.
Identities = 15/40 (37%), Positives = 19/40 (47%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTA 41
R+ GR +R IS+ V A GS L G+T L A
Sbjct: 320 RIDGRDTRTVRPISVRLGVLPRAHGSALFTRGETQALVVA 359
>gi|72041533|ref|XP_796992.1| PREDICTED: similar to Exosome component 8 [Strongylocentrotus
purpuratus]
gi|115958667|ref|XP_001194182.1| PREDICTED: similar to Exosome component 8 [Strongylocentrotus
purpuratus]
Length = 275
Score = 94.9 bits (234), Expect = 9e-18, Method: Composition-based stats.
Identities = 37/251 (14%), Positives = 73/251 (29%), Gaps = 15/251 (5%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+R GR+ ++R L A GS LVK G+T ++ E + K G++
Sbjct: 22 VRPDGRELGEIRSTILNVGSISTAHGSALVKLGNTTVVCGIKGE-FASPTVEEPKKGYLV 80
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSV---VDLSALGSRQIIIDCD 117
+ P + Q ++ L + + D
Sbjct: 81 PNVDLPPLCSAQFKPGPPSIQAQVTSQLVADTLLSSNLLNYEDLCIKEGSMVWVLYCDMI 140
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCS----------NKFQLSQVLKGHVAAISCG 167
+ DG A + AL + + + + + ++ A
Sbjct: 141 CLDYDGNIIDACLIALLAALRNVRLPVVTIAEDTGLAELSSTEDRSLNIVNQFAATTFSV 200
Query: 168 MLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRI 227
+VD E+ ++T G + + S D + A+ R
Sbjct: 201 FDDSILLVDPTVEEEDLATGLMTVIVTQDGRLCNIHKPG-GTPLSTDQIQDCIGRAQTRA 259
Query: 228 ADLIKLQKDVI 238
++ L D +
Sbjct: 260 KEICSLIDDTL 270
>gi|269115421|gb|ACZ26287.1| putative exosome complex exonuclease [Mayetiola destructor]
Length = 273
Score = 94.5 bits (233), Expect = 1e-17, Method: Composition-based stats.
Identities = 39/254 (15%), Positives = 73/254 (28%), Gaps = 17/254 (6%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+R GR+ + R I + + A+GS +VK G+T ++ E P G++
Sbjct: 22 IRPDGREFDIFRPIRINIKSIGSADGSAIVKLGNTTVICGIKAELTAPNVEEPQN-GYLI 80
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEI---QRMIGRALRSVVDLSALGSRQIIIDCD 117
+ P + + Q + L+ + + D
Sbjct: 81 PNIDLTPLCSPKYRSAASTDDAQVLTCHLNDIIRDSKWIDLKQLCIAKEKLVWILYCDIT 140
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVL-----------KGHVAAISC 166
I DG A++ AL + + V V+
Sbjct: 141 CIDYDGSILDASVVALCAALRSLMLPKVQYDIETNNYTVHQTERSPLELSENCPVSTTCM 200
Query: 167 GMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226
D D E+ + G + V + + + F L LA +R
Sbjct: 201 VFDEKSIFADPDAEEEELANTLITIASC-DGELCLVNKAG-GQSIAGQQFDECLKLALNR 258
Query: 227 IADLIKLQKDVISN 240
+ KL ++
Sbjct: 259 EKSICKLISSILKE 272
>gi|226372912|gb|ACO52081.1| Exosome complex exonuclease RRP43 [Rana catesbeiana]
Length = 272
Score = 94.1 bits (232), Expect = 1e-17, Method: Composition-based stats.
Identities = 35/249 (14%), Positives = 72/249 (28%), Gaps = 15/249 (6%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R GR ++ R ++ A+GS LVK G+ ++ E P I G+I
Sbjct: 23 RPDGRDLSEFRTTTINVGSITTADGSALVKIGNCTVICGIKAEFATPP-IDAPNKGYIVP 81
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGS---RQIIIDCDV 118
+ P + Q + + DL + D
Sbjct: 82 NVELTPLCSPRFRPGPPGEEAQVASQFIADVIENSQMILKEDLCIENGKLAWVLYCDLIC 141
Query: 119 IQADGGTRTAAITGAWVALHDCLQHMEDCSNKF----------QLSQVLKGHVAAISCGM 168
+ G + +L + + + ++ K ++
Sbjct: 142 LDYGGNLLDTCMCALVASLRNARLPSVKINEETGLAQVNLSTRNALKIHKHPLSTSFAIF 201
Query: 169 LCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIA 228
+ +VD E+S V + G + ++ + S + ++ A R
Sbjct: 202 DNKHILVDPTNEEESLATGLMTIVTDEDGRLCTIRKPG-GSALSAEKLQDCISRAITRHK 260
Query: 229 DLIKLQKDV 237
++ L V
Sbjct: 261 EVQNLLDSV 269
>gi|332030317|gb|EGI70060.1| Exosome complex exonuclease MTR3 [Acromyrmex echinatior]
Length = 282
Score = 94.1 bits (232), Expect = 1e-17, Method: Composition-based stats.
Identities = 42/237 (17%), Positives = 82/237 (34%), Gaps = 9/237 (3%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R R +N++R I L + A+GS ++ G+T ++ + ++P G +
Sbjct: 37 RHDDRSDNELRNIFLKTGIVSQAKGSAYIEMGNTKVICSVFDPREIPNKTGFCMQGELFC 96
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
E+ S R +Q +E ++ RAL V L + Q+ + V+
Sbjct: 97 EFKFASFSHRKRK-----LHQQDAEEKEYSLILQRALEPAVCLQEFPNFQVDVYATVLDN 151
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
G AAI A +AL + M + + KG + +
Sbjct: 152 GGSALAAAIMAASLALANAGVPMFGLVTASTIG-ICKGTYLVDPTDIEENFCSTKAASDT 210
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
+ + + G I E+ + + D ++L D+ L + +
Sbjct: 211 TNDHGIIVQAALPQHGQISEMFV---IGSINMDTMEYSMDLLSKAHKDICPLLEQCL 264
>gi|170586916|ref|XP_001898225.1| Putative exosome complex exonuclease RRP41 [Brugia malayi]
gi|158594620|gb|EDP33204.1| Putative exosome complex exonuclease RRP41, putative [Brugia
malayi]
Length = 249
Score = 94.1 bits (232), Expect = 1e-17, Method: Composition-based stats.
Identities = 45/243 (18%), Positives = 84/243 (34%), Gaps = 19/243 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIR-NTKHGWI 59
R GR+ +Q+R ++ V A+GS ++ G+T +L + R I
Sbjct: 9 FRQDGRKPHQIRNLNYKLGVYSQADGSAYLEQGNTKVLCAVYGPYEPKQRSRLLEDRCII 68
Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119
+Y M ST R R RS E R++ +A + QI + C+++
Sbjct: 69 NCQYSMATFSTNERK----ERPRGDRRSLEFARLMEKAFEEAILTENYPRSQIDVFCELL 124
Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179
QADG A + +AL D M A+ +C +
Sbjct: 125 QADGSHLAACVNVGTLALADAGVPMRGLVA-----------AASCACAPGGLACVDVNSR 173
Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
E + ++ +V + + ++H +L A+ A + + +
Sbjct: 174 EEMGIVPRLTVATISGQDAVVMAEL---QNRLHKNHLMVILGNARKATAHVHSCLEAAVL 230
Query: 240 NEV 242
+
Sbjct: 231 THI 233
>gi|171185833|ref|YP_001794752.1| exosome complex RNA-binding protein Rrp42 [Thermoproteus
neutrophilus V24Sta]
gi|170935045|gb|ACB40306.1| 3' exoribonuclease [Thermoproteus neutrophilus V24Sta]
Length = 273
Score = 94.1 bits (232), Expect = 1e-17, Method: Composition-based stats.
Identities = 54/252 (21%), Positives = 94/252 (37%), Gaps = 25/252 (9%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R+ GR+ ++R + + V K A+GS VK G TH++ + P + G +
Sbjct: 29 RVDGREPERVRSVEIRTGVVKTADGSAEVKLGRTHVVAGVKVGLGQP-FPDAPDEGVLVV 87
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGS-------RQIII 114
+LP ++ G + E+ R++ R +R + + +
Sbjct: 88 SAEVLPHASP-----YTEVGPPDESAIELARVVDRGIRHCGYVDFKKLAVEGGKAYILWV 142
Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHME---------DCSNKFQLSQVLKGHVAAIS 165
D VI DG AA A AL + D +NK L L A+S
Sbjct: 143 DLYVINDDGNLVDAANLAAVAALKNTQLPAVVKEEQGVKLDRNNKTPLPVDLNKAPIAVS 202
Query: 166 CGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKD 225
G + ++D E+ ++D F +++ IV Q + F+ A L+LA
Sbjct: 203 IGKIGSVLLLDPTLEEELSLDGRITFTISED-RIVAAQKTI--GAFAPQELEAALDLAWK 259
Query: 226 RIADLIKLQKDV 237
+ K+
Sbjct: 260 GRGQYAEFLKNA 271
>gi|196007348|ref|XP_002113540.1| hypothetical protein TRIADDRAFT_57060 [Trichoplax adhaerens]
gi|190583944|gb|EDV24014.1| hypothetical protein TRIADDRAFT_57060 [Trichoplax adhaerens]
Length = 741
Score = 94.1 bits (232), Expect = 1e-17, Method: Composition-based stats.
Identities = 40/238 (16%), Positives = 70/238 (29%), Gaps = 38/238 (15%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+R GR N +R I + GS L K G++
Sbjct: 338 IRCDGRGLNDLRPIDAEINIFPALHGSSLFKRGESQ------------------------ 373
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
P + + S R+ G ALRSVV + + V+
Sbjct: 374 ----FPPYANNEIGRVMENSRREIGHGTL----AKNALRSVVSDDFPF--TVRLTGQVLM 423
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
++G T A+ G +AL D + + V + D+
Sbjct: 424 SNGSTSMASACGGSLALMDAGVPISRHIAGVAMGLVANPSDDGS---KFNYKILTDIAGI 480
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
ED ++D + G I +Q + S + + + ++ + VI
Sbjct: 481 EDYFGEMDFKIAGSREG-ITSLQADFKVTGVSMELIEEAIKKSAVARGKVLDIMYGVI 537
Score = 59.1 bits (141), Expect = 6e-07, Method: Composition-based stats.
Identities = 40/229 (17%), Positives = 72/229 (31%), Gaps = 43/229 (18%)
Query: 13 EISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHGWITAEYGMLP 67
EI + ++ A+GS LV+ G T +L TA + + + + G +P
Sbjct: 53 EIKFSCGKLATIADGSVLVETGSTAVLVTAVMSRATTSYAGFAPLRVDYREKASATGKIP 112
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
+ R R R I R++RS QI+ A+ T
Sbjct: 113 VNFFKR------ELGPSEREILASRSIDRSIRSSFQRGMPQEVQIVCSLMSADAERDTIV 166
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
AI G A+ G + I++ E +
Sbjct: 167 PAING-----------------------------GAVRVGYINDEVIINPTRVELYQSKL 197
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
D V + G +V ++G+A + + +++K +D
Sbjct: 198 DLVIVASAKG-LVMLEGTASE--LPDAGVLKAITYGLEEAQNVVKAVED 243
>gi|91087143|ref|XP_975288.1| PREDICTED: similar to exosomal 3-5 exoribonuclease complex subunit
Rrp41-like protein [Tribolium castaneum]
Length = 282
Score = 94.1 bits (232), Expect = 2e-17, Method: Composition-based stats.
Identities = 50/241 (20%), Positives = 87/241 (36%), Gaps = 9/241 (3%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R GR + R+I L V A+GS ++ T ++ + ++P + G I
Sbjct: 42 RADGRTSTEHRKIFLKTGVVSQAKGSAYIELDQTKVIVSVFDPREIPNKTDYSSKGEIYC 101
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
E+ P S R +Q Q+ ++ +AL S V + Q+ I V+
Sbjct: 102 EFKFAPFSCHKRR-----LHQQDAEEQQFSAIMKQALESAVFRHEFPNFQVDIYAMVLHN 156
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
DG +AAIT A VAL M D L+ + + + E
Sbjct: 157 DGAALSAAITAAGVALAHAGIPMYDLITSVTLAVQGNHLLVDPTLEEERLCQVPLFKEEE 216
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
++ V + + T I + S S + + + + D++ L K +
Sbjct: 217 NNHGIVVLSVLATHE-QISQFYQSGY---LSYACLSSGIEMLTNAAKDIVTLVKKCLVKH 272
Query: 242 V 242
V
Sbjct: 273 V 273
>gi|268552543|ref|XP_002634254.1| C. briggsae CBR-EXOS-4.1 protein [Caenorhabditis briggsae]
gi|206557764|sp|A8WQQ5|EXOS4_CAEBR RecName: Full=Putative exosome complex component RRP41
gi|309371508|emb|CBG92366.1| CBR-EXOS-4.1 protein [Caenorhabditis briggsae AF16]
Length = 240
Score = 93.8 bits (231), Expect = 2e-17, Method: Composition-based stats.
Identities = 53/232 (22%), Positives = 88/232 (37%), Gaps = 19/232 (8%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
R+ GR+ Q+R I+ +++ AEGSC ++ G+T +L + R I
Sbjct: 9 FRMDGRRPAQIRNINTRLGLNRNAEGSCYLEHGNTKVLCAVYGPYESKASKRLEDRCAIV 68
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
+Y S R R +S EI R++ +A SV+ + QI I C+VIQ
Sbjct: 69 CQYSTTTFSGLERK----NRPRGDRKSTEISRLLEKAFESVILTESFPRSQIDIFCEVIQ 124
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
DG A + +AL D M+ ++ V + ++
Sbjct: 125 GDGSNLAACVNATSLALADAGIPMKGIASAATCGIVETKPIVDLTSREETD--------- 175
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
A D +VE+Q DH +++ AK AD+ +
Sbjct: 176 -LLPRVTLATICGRDEVILVELQ-----NRLHIDHLSVVMDAAKATCADVYE 221
>gi|288560608|ref|YP_003424094.1| exosome complex RNA-binding protein Rrp42 [Methanobrevibacter
ruminantium M1]
gi|288543318|gb|ADC47202.1| exosome complex RNA-binding protein Rrp42 [Methanobrevibacter
ruminantium M1]
Length = 263
Score = 93.8 bits (231), Expect = 2e-17, Method: Composition-based stats.
Identities = 47/240 (19%), Positives = 83/240 (34%), Gaps = 23/240 (9%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R GR ++ R+I + V AEGS VK GDT ++ P + G +
Sbjct: 21 RADGRAFDERRDIFIEPNVIDKAEGSARVKLGDTQVIVGVKPTIGEP-FADTPNLGVLMT 79
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRA--------LRSVVDLSALGSRQII 113
+LP + S E+ R++ R L + +
Sbjct: 80 NCELLPMAAPGFEPGP-----PSPESIELARVVDRGIRESELVDLEKLCIEEGKKVWMLF 134
Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQ-------LSQVLKGHVAAISC 166
ID VI DG A AL + + + + + ++ +A +
Sbjct: 135 IDLHVIDYDGNLFDCANLAVMSALLNTKLPVAEYIDDEVVLSEDETMDLPVRDKLALSTF 194
Query: 167 GMLCGYPIVDLDYGEDSTIDVDANFVMTDSGH-IVEVQGSAERATFSQDHFFAMLNLAKD 225
+ I+D E+ +D +TD G+ I +Q E ++D ++LA +
Sbjct: 195 VKIGNGLILDPSLEEEEILDARITIGVTDEGNHICSMQKGGEE-PLTRDDILDAVHLAFE 253
>gi|42567185|ref|NP_194479.2| 3' exoribonuclease family domain 1-containing protein [Arabidopsis
thaliana]
gi|124300968|gb|ABN04736.1| At4g27490 [Arabidopsis thaliana]
gi|124301080|gb|ABN04792.1| At4g27490 [Arabidopsis thaliana]
gi|332659949|gb|AEE85349.1| 3'-5'-exoribonuclease family protein [Arabidopsis thaliana]
Length = 256
Score = 93.8 bits (231), Expect = 2e-17, Method: Composition-based stats.
Identities = 41/240 (17%), Positives = 84/240 (35%), Gaps = 25/240 (10%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R GR +Q R L A GS +FG+T ++ + + + + G +
Sbjct: 34 RPDGRGFHQCRPALLQTGAVSSASGSAYAEFGNTKVIVSVFGPRESKKAMVYSDVGRLNC 93
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
++ QG +E M+ +AL V+ + + + V+++
Sbjct: 94 NVSYTNFASPT--------LGQGTDHKEYSSMLHKALEGVIMMETFPKTTVDVFALVLES 145
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
G + I+ A +AL D M D + A+S + ++D E
Sbjct: 146 GGSDLSVLISCASLALADAGIMMYDL-------------ITAVSVSCIGKSLMIDPVTEE 192
Query: 182 DSTID-VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
+ D M I ++ + E ++ + + L D + L ++ +D +
Sbjct: 193 EGCEDGSFMMTCMPSRYEITQLTITGE---WTTPNINEAMQLCLDASSKLGEIMRDCLKQ 249
>gi|12835817|dbj|BAB23374.1| unnamed protein product [Mus musculus]
Length = 540
Score = 93.8 bits (231), Expect = 2e-17, Method: Composition-based stats.
Identities = 36/168 (21%), Positives = 61/168 (36%), Gaps = 14/168 (8%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE--------EKVPMWIRN 53
R GR +R IS + K GS L + G T +L T T + +++ I
Sbjct: 358 RCDGRDLTSLRNISCEVDMFKTLHGSALFQRGQTQVLCTVTFDSLESSIKSDQIITAING 417
Query: 54 TKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQII 113
K Y +T K V+ R+ G +AL V+ I
Sbjct: 418 VKDKNFMLHYEFPLYATNETGKVTGVNRRELGHGAL----AEKALCPVIPKDFPF--TIR 471
Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHV 161
+ +V++++G + A+ G +AL D + + V K +
Sbjct: 472 VTSEVLESNGSSSMASACGGSLALMDAGVPISSAVAGVAVGLVTKTNP 519
Score = 69.9 bits (169), Expect = 3e-10, Method: Composition-based stats.
Identities = 40/218 (18%), Positives = 77/218 (35%), Gaps = 25/218 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTA---TLEEKVPMWIRNTKHGWITAEYGMLP 67
R++ ++ ++++A+G +++ GDT ++ TA T + A G +P
Sbjct: 54 RKLEISSGKLARFADGCAVIQSGDTAVMVTAVSKTKASPSQFMPLVVDYRQKAAAAGRIP 113
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
+ R R R+I R++R + Q++ + +
Sbjct: 114 TNYLRREIGS------SDREVLTSRVIDRSIRPLFPAGYFYDTQVLCNLLAVDGINEPDI 167
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
A+ GA VA G V A+ GM+ G +V+ E S+ +
Sbjct: 168 LAVNGASVA-------------LSLSDIPWNGPVGAVRIGMIDGECVVNPTRREMSSSTL 214
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKD 225
+ IV ++ SAE Q F + +
Sbjct: 215 NLVVAGAPKSQIVMLEASAEN--ILQQDFCHAIKVGVK 250
>gi|330797129|ref|XP_003286615.1| hypothetical protein DICPUDRAFT_31155 [Dictyostelium purpureum]
gi|325083440|gb|EGC36893.1| hypothetical protein DICPUDRAFT_31155 [Dictyostelium purpureum]
Length = 276
Score = 93.8 bits (231), Expect = 2e-17, Method: Composition-based stats.
Identities = 38/255 (14%), Positives = 76/255 (29%), Gaps = 21/255 (8%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIR-------- 52
+R GR N R+ +++ A+GS VK G+T ++ E
Sbjct: 21 VRPDGRSLNDTRKTTISTGSVTTADGSSFVKIGNTSVVCGVRAEVGEKPSTDKSKLQSIN 80
Query: 53 NTKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGS--- 109
N ++ I + P + + S+ + +
Sbjct: 81 NHENSNIFINIELGPICSNTFSSTKPSDMAMTLCSRLNSLINRLEIPDTDFYFDEEGKAL 140
Query: 110 RQIIIDCDVIQADGGTRTAAITGAWVALHDCLQH---------MEDCSNKFQLSQVLKGH 160
+ +D + DG AA+ AL + + +K +
Sbjct: 141 WYLYVDIYCLDYDGNIYDAAVLSILSALKNVKLPKGIIENNDEYYKDLEQPLRELNIKHY 200
Query: 161 VAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAML 220
+ S ++ Y + D E+ N + I + + + S+ + +
Sbjct: 201 LIPTSFSVIEDYILSDPSLEEEKLSTGTINITYNEHKEICLLLVTG-INSISESNLKECM 259
Query: 221 NLAKDRIADLIKLQK 235
AKDR +I L
Sbjct: 260 KKAKDRCQYIINLIN 274
>gi|224372889|ref|YP_002607261.1| polyribonucleotide nucleotidyltransferase [Nautilia profundicola
AmH]
gi|223588442|gb|ACM92178.1| polyribonucleotide nucleotidyltransferase [Nautilia profundicola
AmH]
Length = 451
Score = 93.8 bits (231), Expect = 2e-17, Method: Composition-based stats.
Identities = 25/109 (22%), Positives = 38/109 (34%), Gaps = 6/109 (5%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKH---- 56
+R GR+ +++R IS+ + A GSCL G T L AT + +
Sbjct: 341 IRADGRKLDEIRPISIETNLLPRAHGSCLFTRGQTQALAVATRGGDMDAQVYGNLTDKEE 400
Query: 57 --GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVD 103
Y S G + S R+ G +R I L +
Sbjct: 401 KLEKFMLHYNFPAFSVGEAERLGPPSRRELGHGNLAKRAIEPLLDLSLM 449
Score = 57.9 bits (138), Expect = 1e-06, Method: Composition-based stats.
Identities = 25/235 (10%), Positives = 68/235 (28%), Gaps = 16/235 (6%)
Query: 20 VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGNRVKREAV 79
V+K A S + G+T +L T T + +
Sbjct: 21 VAKQANSSVWFEDGNTVMLATLT--YNPDEMVEEDFVPLVVQYVEKAYAVGKIPAGFVKR 78
Query: 80 SGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVALHD 139
+ G R++ R+LR + + + + D +TAA+ A ++
Sbjct: 79 EQKPGDFETLTARIVDRSLRPLFPKEYGYNTVLTVMALSADEDSDLQTAAMNAAAACMYL 138
Query: 140 CLQHMEDCSNKFQLSQVL-KGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGH 198
+ +++ + + + G + + +D + ++ +
Sbjct: 139 SDLPFAKMVYGVRATRIKGELIINPTLSQLEEGDFNLFVTGTKDELLMIEFASQGQEEIE 198
Query: 199 IV---EVQGSA----------ERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
I+ ++ +D +L ++ I ++ + +
Sbjct: 199 IIPVDDIMLDGVPVENTIVKYRINEIKEDELVEILEKVQEAIKKGASAYEEALKD 253
>gi|327310388|ref|YP_004337285.1| exosome complex RNA-binding protein Rrp42 [Thermoproteus uzoniensis
768-20]
gi|326946867|gb|AEA11973.1| exosome complex RNA-binding protein Rrp42 [Thermoproteus uzoniensis
768-20]
Length = 273
Score = 93.8 bits (231), Expect = 2e-17, Method: Composition-based stats.
Identities = 51/254 (20%), Positives = 94/254 (37%), Gaps = 25/254 (9%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+R+ GR +Q+RE+S+T V A+GS G T ++ + P + G +
Sbjct: 28 VRIDGRTPDQLREVSITTNVVNTADGSAEALLGKTRVVAGVKVGLGQP-FPDAPDEGVLI 86
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSA-------LGSRQII 113
+LP ++ + G + E+ R++ R +R + +
Sbjct: 87 VNAEILPHASP-----YSEIGPPDETAIELARVVDRGIRHSGFVDFKKLAIDQNKVYVLW 141
Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHME---------DCSNKFQLSQVLKGHVAAI 164
+D V+ DG AA A AL + D +NK L L A+
Sbjct: 142 VDLYVLNDDGNLVDAANLAALAALRSTMLPSAVKDETGVKLDRNNKTALPSDLSKAPIAV 201
Query: 165 SCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAK 224
S G + IVD ++ E+ ++D + IV +Q + F++ ++LA
Sbjct: 202 SIGKIDNRLIVDPNFEEELSLDGRITVTIAQD-SIVSIQKT--MGYFTEQELGQAVDLAY 258
Query: 225 DRIADLIKLQKDVI 238
+ +
Sbjct: 259 SVRDKFKDILLKSL 272
>gi|118601810|ref|NP_001073074.1| exosome complex component RRP43 [Bos taurus]
gi|122135904|sp|Q2KHU3|EXOS8_BOVIN RecName: Full=Exosome complex component RRP43; AltName:
Full=Exosome component 8; AltName: Full=Ribosomal
RNA-processing protein 43
gi|86826533|gb|AAI12882.1| Exosome component 8 [Bos taurus]
gi|296481825|gb|DAA23940.1| exosome complex exonuclease RRP43 [Bos taurus]
Length = 276
Score = 93.8 bits (231), Expect = 2e-17, Method: Composition-based stats.
Identities = 41/252 (16%), Positives = 76/252 (30%), Gaps = 15/252 (5%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R GR+ + R ++ A+GS LVK G+T ++ E P G++
Sbjct: 23 RPDGRELGEFRTTTVNVGSIGTADGSALVKLGNTTVICGIKAEFGAPPT-DAPDKGYVVP 81
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGS---RQIIIDCDV 118
+ P + Q + + DL + D
Sbjct: 82 NVDLSPLCSSRFRSGPPGEEAQVASQFIADVIENSQIIQKEDLCISSGKLAWVLYCDLIC 141
Query: 119 IQADGGTRTAAITGAWVALHDCLQHME---------DCSNKFQLSQVLKGHVAAISCGML 169
+ DG A AL + + + K + ++ H A S +
Sbjct: 142 LNHDGNILDACTFALLAALKNVQLPEVTINEETALAEVNLKKKSCLNIRTHPVATSFAVF 201
Query: 170 CGY-PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIA 228
IVD E+ VM + G + + + + ++ A R
Sbjct: 202 DDTLLIVDPTEEEEHLATGTLTVVMDEEGRLCCLHKPG-GSGLTGAKLQDCMSRAVTRHK 260
Query: 229 DLIKLQKDVISN 240
++ KL +V +
Sbjct: 261 EVKKLMDEVFKS 272
>gi|328712784|ref|XP_001945013.2| PREDICTED: exosome complex exonuclease RRP41-like [Acyrthosiphon
pisum]
Length = 249
Score = 93.4 bits (230), Expect = 2e-17, Method: Composition-based stats.
Identities = 45/245 (18%), Positives = 84/245 (34%), Gaps = 25/245 (10%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVP--MWIRNTKHGW 58
+R GR+ ++R I V +GS ++ G+T ++ ++
Sbjct: 9 LRTDGRRSGELRRIRCKMGVFNQPDGSAYLEQGNTKVVAAIYGPHEIRTNRAKAPNDSAV 68
Query: 59 ITAEYGMLPRSTGNRVKREAVSGRQGGRSQ-EIQRMIGRALRSVVDLSALGSRQIIIDCD 117
I +Y M S R + R E+ + +A+ + + QI I
Sbjct: 69 INCQYSMATFSRSERKR------RPRDNKSAELTLHLKQAMATAIKTDLYPKSQIDIFVQ 122
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
V+Q+DGG + + A +AL D ME+ S P+VD+
Sbjct: 123 VLQSDGGNYSVCVNAATLALIDAGIAMEEFVISCTSSL------------ANGETPLVDI 170
Query: 178 DYGEDSTIDVDANFVM-TDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ E++ + SG I ++ S +H +L A + +
Sbjct: 171 SHLEETMGGPSLTVAILPISGKIAMLETS---QRIHINHLEPVLTEAVRGCRYIYENLNK 227
Query: 237 VISNE 241
+I
Sbjct: 228 IIKKH 232
>gi|196004466|ref|XP_002112100.1| hypothetical protein TRIADDRAFT_55798 [Trichoplax adhaerens]
gi|190585999|gb|EDV26067.1| hypothetical protein TRIADDRAFT_55798 [Trichoplax adhaerens]
Length = 288
Score = 93.4 bits (230), Expect = 3e-17, Method: Composition-based stats.
Identities = 38/255 (14%), Positives = 70/255 (27%), Gaps = 17/255 (6%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R GR+ R + + GS ++ T +L E P R + G +
Sbjct: 23 RADGRRCIDFRRFQIETGIVSNTNGSARLRQYGTDVLVGIKAEIGQPKQER-SNTGHLEF 81
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGS--RQIIIDCDVI 119
+T Q +S E L G + ID V+
Sbjct: 82 YVDCSSYNTTEIDGHIGDFTTQLTKSLERIYDSENVLDLKSLTIIAGEQVWVLYIDAVVL 141
Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKF-------------QLSQVLKGHVAAISC 166
+ G AL++ +++ + + +SC
Sbjct: 142 ECCGNLLDCISIAVKAALYNTRIPGVSVNDEEGVLELEISDDPNDEKKLSIDKVPVIVSC 201
Query: 167 GMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226
+ +VD E+ + D +I +Q S + F M+ A+
Sbjct: 202 NKIGHRYVVDATQEEECCSSGRLLIAVNDRNNICSLQKSGT-GSLDPSTIFEMIETARQA 260
Query: 227 IADLIKLQKDVISNE 241
L + + E
Sbjct: 261 AVPLNQELLQTLKRE 275
>gi|242046408|ref|XP_002461075.1| hypothetical protein SORBIDRAFT_02g040250 [Sorghum bicolor]
gi|241924452|gb|EER97596.1| hypothetical protein SORBIDRAFT_02g040250 [Sorghum bicolor]
Length = 261
Score = 93.4 bits (230), Expect = 3e-17, Method: Composition-based stats.
Identities = 44/240 (18%), Positives = 82/240 (34%), Gaps = 25/240 (10%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R GR + R + + A GS +FG T ++ + + + + G +
Sbjct: 39 RADGRSFHDCRPAFMQTGPTTAASGSAYAEFGKTKVIVSVFGPRESKKAMMYSDIGRLNC 98
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
+T R QG ++E M+ +AL V L + + V+++
Sbjct: 99 NVSYTTFATPVRG--------QGADNKEYSSMLYKALEGAVMLHTFPKTTVDVFALVLES 150
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
G I+ A +AL D M D V ++S I+D E
Sbjct: 151 GGSDLPIIISCASLALADAGIMMYDL-------------VTSVSVSCFGKNIIIDPTSDE 197
Query: 182 DSTIDVDANF-VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
++ D M I ++ + E +S + L D + L + +D + +
Sbjct: 198 EAWQDGSLVVAFMPARKEITQLTLTGE---WSDGRITNAVELCMDACSKLGDILRDHLKD 254
>gi|255076363|ref|XP_002501856.1| predicted protein [Micromonas sp. RCC299]
gi|226517120|gb|ACO63114.1| predicted protein [Micromonas sp. RCC299]
Length = 232
Score = 93.0 bits (229), Expect = 3e-17, Method: Composition-based stats.
Identities = 41/243 (16%), Positives = 71/243 (29%), Gaps = 19/243 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIR--NTKHGWI 59
R GR QMR I + V A GS V+ T ++ + I G +
Sbjct: 5 REDGRSAEQMRPIFVKTGVISQAAGSAYVELDKTKVMCGVYGPRQGGPGIDKVEFDRGRL 64
Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119
+ + +T QG +E ++ RAL V + + V+
Sbjct: 65 DVDVKLATFAT----SGPRGKVAQGDAEREFSSIVHRALSGAVMTETFPKTTVDVFATVL 120
Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179
+A+G A I A AL + M D + +
Sbjct: 121 EANGSELCATIAAASAALCEAGVAMRDLVSACT----------GGGADGPNALLLDPARG 170
Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
E + M G +V + + + LA A + ++ +
Sbjct: 171 EEAAAEAGVTLAYMCRLGEASQVVATGTWDG---ESLDDAVQLAASGCARVDAALREALR 227
Query: 240 NEV 242
+ V
Sbjct: 228 SSV 230
>gi|291226456|ref|XP_002733208.1| PREDICTED: exosome component 8-like [Saccoglossus kowalevskii]
Length = 275
Score = 93.0 bits (229), Expect = 3e-17, Method: Composition-based stats.
Identities = 39/250 (15%), Positives = 73/250 (29%), Gaps = 15/250 (6%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+R GR+ ++R + AEGS LVK G+T ++ E P K G++
Sbjct: 22 VRPDGRELGEIRSTIVNIGSISTAEGSALVKLGNTTVICGIKAELCTPTN-DEPKKGFVV 80
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGS---RQIIIDCD 117
+ P + Q + + + DL + D
Sbjct: 81 PNVDLPPLCSPRFRPGPPSEQAQVVSQFIADVLKDSKMVNHEDLCIAEGKIVWVLYCDMM 140
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLS----------QVLKGHVAAISCG 167
+ DG A I AL + + + V V+
Sbjct: 141 CLDYDGNVIDACIISLLAALRNVALPSIEVDEETAKPKLTSSTSSTMTVQSLPVSTSFAI 200
Query: 168 MLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRI 227
I D E++ V + G + + ++ S+ + + R
Sbjct: 201 FDNSILIADPTNEEENLATGVVTVVTNECGELCALHKPG-GSSLSESQIQECVKRSFSRG 259
Query: 228 ADLIKLQKDV 237
++ KL +
Sbjct: 260 DEIRKLLDET 269
>gi|254675240|ref|NP_001157042.1| exosome complex component RRP43 isoform 1 [Mus musculus]
Length = 280
Score = 93.0 bits (229), Expect = 3e-17, Method: Composition-based stats.
Identities = 40/255 (15%), Positives = 74/255 (29%), Gaps = 17/255 (6%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE---EKVPMWIRNTKHGW 58
R GR+ + R ++ A+GS LVK G+T ++ E V R
Sbjct: 23 RPDGRELGEFRATTVNIGSISTADGSALVKLGNTTVICGVKAEFAAPPVDAPDRGYVVFL 82
Query: 59 ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGS---RQIIID 115
+ P + Q + + DL + D
Sbjct: 83 SVPNVDLPPLCSSRFRTGPPGEEAQVTSQFIADVVDNSQVIKKEDLCISPGKLAWVLYCD 142
Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHME---------DCSNKFQLSQVLKGHVAAISC 166
+ DG A AL + + + K + ++ + A S
Sbjct: 143 LICLDYDGNILDACTFALLAALKNVQLPEVTINEETALAEVNLKKKSYLNVRTNPVATSF 202
Query: 167 GMLCGY-PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKD 225
+ IVD E+ V + G + + + + ++ A
Sbjct: 203 AVFDDTLLIVDPTGEEEHLSTGTLTVVTDEDGKLCCLHKPG-GSGLTGAKLQDCMSRAVT 261
Query: 226 RIADLIKLQKDVISN 240
R ++ KL +VI +
Sbjct: 262 RHKEVSKLLDEVIQS 276
>gi|308801345|ref|XP_003077986.1| putative polynucleotide phosphorylase (ISS) [Ostreococcus tauri]
gi|116056437|emb|CAL52726.1| putative polynucleotide phosphorylase (ISS) [Ostreococcus tauri]
Length = 615
Score = 93.0 bits (229), Expect = 3e-17, Method: Composition-based stats.
Identities = 30/157 (19%), Positives = 55/157 (35%), Gaps = 8/157 (5%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R GR +R I+ + GS L G+T + ATL + + I T+
Sbjct: 428 RQDGRTTRMVRPIACEAGLLPRTHGSALFTRGETQAIGVATLGGNQDAQRVDDIEKTEDK 487
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G + S R+ G RAL ++ ++
Sbjct: 488 RFMLHYFFPPSSVGETGRIGGASRREVGHGNL----AERALTPIIPSQEEFPFVCRMEST 543
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLS 154
+ +++G + A + +AL D ++ + +
Sbjct: 544 ITESNGSSSMATVCAGTLALLDAGVPLKRYVFQVLKN 580
Score = 66.0 bits (159), Expect = 4e-09, Method: Composition-based stats.
Identities = 30/225 (13%), Positives = 63/225 (28%), Gaps = 17/225 (7%)
Query: 13 EISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG 71
+ L V A G+ + GDT + TA ++ + +
Sbjct: 81 RVRLETGRVGAQANGAVMASEGDTVIYATACASREL--TGDGSFVPLTVNYSERFSAAGR 138
Query: 72 NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAIT 131
G R R++ R +R ++ Q++ + T AIT
Sbjct: 139 TAGGFRKRDGAVSERETLKARLVDRPIRPMIPKGWGYDTQVLQWLMSFDGERSTDALAIT 198
Query: 132 GAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANF 191
A AL ++ ++ + PIV+ + +D
Sbjct: 199 AASAALAVSDIPLKKPVVGVRVGLMPGSDE-----------PIVNPSQEQMKESRLDLVL 247
Query: 192 VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
TD ++ ++ + D + + ++ K
Sbjct: 248 AGTDE-AVLMIE--GFCDFLTTDEMLRAIAKGHEAVSKACKEIDA 289
>gi|219127863|ref|XP_002184146.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217404377|gb|EEC44324.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 274
Score = 92.6 bits (228), Expect = 4e-17, Method: Composition-based stats.
Identities = 43/244 (17%), Positives = 79/244 (32%), Gaps = 7/244 (2%)
Query: 1 MRLSGRQENQMREISLTRRVSKYA--EGSCLVKFGDTHLLTTATLE-EKVPMWIRNTKHG 57
+R GR+ +++R + + + GS LV+ G T +L T + + N
Sbjct: 16 LRNDGRKPHEIRRMRVQMSPLSVSTISGSALVEMGLTVVLATVRGPVDCLRRADENPDQA 75
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
+ P S+ R + + R E M+ RA+ + + L +I +
Sbjct: 76 VLDVTVQSAPFSSS--ADRRVANPKTDRRLIEASHMLKRAMEAAILLHLYPKSRIELVVS 133
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
V+ DGG AAI A +AL D M+D L +
Sbjct: 134 VLADDGGRLCAAINAATLALMDAGIPMKDFVCACSAGLPGTSATPDSHALTLVDLNRQEE 193
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
++ +V Q A D +L+ A + + + +
Sbjct: 194 SSTGGQAATHMPVALLPQRNTLVLAQCEARLPNL--DTLERVLDAATEGCRAVFDILQAA 251
Query: 238 ISNE 241
+
Sbjct: 252 VREH 255
>gi|84490040|ref|YP_448272.1| exosome complex RNA-binding protein Rrp42 [Methanosphaera
stadtmanae DSM 3091]
gi|84373359|gb|ABC57629.1| putative exosome complex, exonuclease 2 subunit [Methanosphaera
stadtmanae DSM 3091]
Length = 265
Score = 92.6 bits (228), Expect = 4e-17, Method: Composition-based stats.
Identities = 47/249 (18%), Positives = 82/249 (32%), Gaps = 22/249 (8%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R+ R+ ++ R IS+ A+GS +V G T ++ + P IT
Sbjct: 22 RIDDRKFSEYRNISIKTNYIGKADGSAMVSIGCTTVIVGVKAQMTTPFNNAPNSGIIITN 81
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRA--------LRSVVDLSALGSRQII 113
+ R G + EI R++ RA L + + S ++
Sbjct: 82 TELLAI------ASRNFEYGPPNKFAVEISRVVDRAIRESPVVDLDKLCVIEGSKSWKLH 135
Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQL-------SQVLKGHVAAISC 166
ID ++ DG AA GA AL N + +K +
Sbjct: 136 IDMYIVDFDGNIMDAACLGAICALLTTKIPTATSVNGEIVIDEENLTPLPIKNRSILCTV 195
Query: 167 GMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226
+ IVD E+ +D +F + G + +Q T + + +A R
Sbjct: 196 VKINNQLIVDPSKIEEILMDSSVSFGFREDGSLCALQKCG-LNTLTHKEVTKAMKIASIR 254
Query: 227 IADLIKLQK 235
+L +
Sbjct: 255 AKELFSIID 263
>gi|52548653|gb|AAU82502.1| tRNA nucleotidyltransferase [uncultured archaeon GZfos18B6]
Length = 238
Score = 92.6 bits (228), Expect = 4e-17, Method: Composition-based stats.
Identities = 49/239 (20%), Positives = 92/239 (38%), Gaps = 17/239 (7%)
Query: 5 GR--QENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAE 62
GR + R+I + R + K AEGS V+ GDT +L +E P + G +
Sbjct: 2 GRWARILDFRDIIVERDLIKKAEGSTRVQIGDTVVLVGVKVEPGAP-FPDTPNKGVLMTN 60
Query: 63 YGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRA--------LRSVVDLSALGSRQIII 114
++P ++ SG G S E+ R++ R L + I I
Sbjct: 61 AELVPLASPEF-----ESGPPGENSIELARVVDRGIRGSETIDLEKLCIEEGEKVWMIFI 115
Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPI 174
D + DG AA GA ++L + E + + ++ A++ + G +
Sbjct: 116 DIHTLDNDGNLVDAAALGAIMSLLNVTIPYEQYGLTGEDTLQIRDTPVAVTVVEIGGNLL 175
Query: 175 VDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
VD + E+S + G I +Q S + +++ M + ++ ++ +
Sbjct: 176 VDPNVYEESAATSKLTVISNADGSISGLQKSG-SSGLTEEKIVKMTEIGIEKAREIREK 233
>gi|312065760|ref|XP_003135946.1| EXOSome component family member [Loa loa]
gi|307768890|gb|EFO28124.1| EXOSome component family member [Loa loa]
Length = 247
Score = 92.6 bits (228), Expect = 5e-17, Method: Composition-based stats.
Identities = 46/242 (19%), Positives = 84/242 (34%), Gaps = 19/242 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIR-NTKHGWIT 60
R GR+ Q+R ++ V A+GS ++ G+T +L + R I
Sbjct: 10 RQDGRKPYQIRNLNYKLGVYSQADGSAYLEQGNTKVLCAVYGPYEPKQRSRLLEDRCIIN 69
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
+Y M ST R R RS E R++ +A + V QI + C+++Q
Sbjct: 70 CQYSMATFSTNERK----ERPRGDRRSLEFARLMEKAFEAAVLTENYPRSQIDVFCELLQ 125
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADG A + +AL D M A+ +C +
Sbjct: 126 ADGSHLAACVNVGTLALADAGVPMRGLVA-----------AASCACAPNGVACVDVNSRE 174
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
E I ++ +V + + +++ +L A+ A + + +
Sbjct: 175 EMGIIPRLTVATISGQDAVVLAEL---QNRLHKNYLIVILEAARRATAHVHSCLEAAVLT 231
Query: 241 EV 242
+
Sbjct: 232 HI 233
>gi|330952126|gb|EGH52386.1| ribonuclease PH [Pseudomonas syringae Cit 7]
Length = 92
Score = 92.6 bits (228), Expect = 5e-17, Method: Composition-based stats.
Identities = 35/67 (52%), Positives = 49/67 (73%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R SGR +Q+R I +TR +K+AEGS LV+FGDT ++ T ++E VP +++ GW+TA
Sbjct: 25 RPSGRAADQLRSIRITRNYTKHAEGSVLVEFGDTKVICTVSVENGVPRFLKGQGQGWLTA 84
Query: 62 EYGMLPR 68
EYGMLPR
Sbjct: 85 EYGMLPR 91
>gi|169595492|ref|XP_001791170.1| hypothetical protein SNOG_00485 [Phaeosphaeria nodorum SN15]
gi|111070860|gb|EAT91980.1| hypothetical protein SNOG_00485 [Phaeosphaeria nodorum SN15]
Length = 251
Score = 92.6 bits (228), Expect = 5e-17, Method: Composition-based stats.
Identities = 43/240 (17%), Positives = 80/240 (33%), Gaps = 9/240 (3%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE-EKVPMWIRNTKHGWI 59
+RL GR+ N++R I A+GS ++ G+T +L + T E R G
Sbjct: 13 LRLDGRRWNELRRIHAQISTQAAADGSSYLEMGNTKILVSVTGPAEGKQAGQRGGNGGQA 72
Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119
E + G RS+E++ + A V+ L I ++ +I
Sbjct: 73 KVEVEINFAGFS--GMERRRRGGGDKRSKEMEHCVRSAFEGVLLLHLYPHSTITLNIHII 130
Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179
DG A I + +AL D M D + AA + ++
Sbjct: 131 SQDGSLLAACINASTLALIDAGIPMTDYLV-ACTAASSASSSAADNASAEDPLLDLNTLE 189
Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
++ +D + ++ + ML + + L + +V+
Sbjct: 190 EQELPFLTVGTLGESDKVAVCVLE-----TRVRMERLEGMLAVGIEGCKRLRSILDEVVK 244
>gi|326914227|ref|XP_003203428.1| PREDICTED: exosome complex exonuclease RRP43-like [Meleagris
gallopavo]
Length = 291
Score = 92.2 bits (227), Expect = 5e-17, Method: Composition-based stats.
Identities = 41/253 (16%), Positives = 83/253 (32%), Gaps = 17/253 (6%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R GR+ + R ++ A+GS LVK G+T ++ E P + + G+I
Sbjct: 38 RPDGRELGEFRATTVNIGSITTADGSALVKLGNTTVICGVKAELAAPA-VDSANKGYIVP 96
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
+ + R + SQ I +I + + + ++
Sbjct: 97 NVELPSLCS-TRFRSGPPGEEAQAASQFIADVIENSQIIAKEDLCIAEGKLAWVLYCDII 155
Query: 122 DGGTRTAAITGAWVALHDCLQHME-------------DCSNKFQLSQVLKGHVAAISCGM 168
+ + AL L++++ + + K + V++ H A S +
Sbjct: 156 CLDYDGNILDASTFALLAALKNVQLPSVTINEETGLSEVNLKQKNPLVIRKHPVATSFAI 215
Query: 169 LCGY-PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRI 227
IVD E+ V + + V + + ++ A R
Sbjct: 216 FDDXLLIVDPTAEEEDLATGTVTVVTDEDDRLCSVHKPG-GSPLTGAKLQDCISRAITRH 274
Query: 228 ADLIKLQKDVISN 240
++ KL VI +
Sbjct: 275 KEVKKLIDKVIKS 287
>gi|290998465|ref|XP_002681801.1| predicted protein [Naegleria gruberi]
gi|284095426|gb|EFC49057.1| predicted protein [Naegleria gruberi]
Length = 289
Score = 92.2 bits (227), Expect = 5e-17, Method: Composition-based stats.
Identities = 42/243 (17%), Positives = 70/243 (28%), Gaps = 19/243 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGD-THLLTTATLEEKVPMWIRNTKHGWI 59
MR GR R+ SL + GS VK + T +L +E G +
Sbjct: 20 MRNDGRARLDYRDFSLETGIVSQTNGSARVKLANHTDVLVGVKVEIGEVDQ-DFPDQGRL 78
Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIII---DC 116
P + R A S ++ L + +Q I DC
Sbjct: 79 EVHVECSPSANNEFEGRGAEEINAELISTLRNQLKNSFAVDWTKLCIVKGKQCWILYVDC 138
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQ--------------LSQVLKGHVA 162
V+ + G A AL++ +
Sbjct: 139 IVLDSAGNLFDALAIATRAALYNTRIPKIEVMEISPTETEFEVSDDPHEYSRIDCSNIPI 198
Query: 163 AISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNL 222
+++ G + IVD E+ I + GHI ++ S + + + ML
Sbjct: 199 SVTLGKIGSKFIVDPSLEEEECISNRMTVSVNKKGHICSIKKSGKDSGVNPSELTKMLQT 258
Query: 223 AKD 225
A+
Sbjct: 259 ARK 261
>gi|294464676|gb|ADE77845.1| unknown [Picea sitchensis]
Length = 256
Score = 92.2 bits (227), Expect = 5e-17, Method: Composition-based stats.
Identities = 49/241 (20%), Positives = 83/241 (34%), Gaps = 22/241 (9%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+R GRQ + R + A GS +FG T ++ + + + G +
Sbjct: 31 IRSDGRQLLECRLAFMKTGAVNAAAGSAYAEFGSTKVIVSVFGPRESSKAQIYSDTGRLN 90
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
ST R QG +E M+ +AL V L+ + + V++
Sbjct: 91 CSVSFATFSTPIR-----GKLSQGTEHREYSTMLHKALEGAVMLNTFPKATVDVFALVLE 145
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
+ GG IT A +AL D M D + +S + K I+D
Sbjct: 146 SGGGDLPVVITCATLALADAGIMMFDVVSAVSVSSIGK-------------SLIIDPTTE 192
Query: 181 EDSTIDVDANFVMTDS-GHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
E++ D T S I ++ + E +S L L D + L + + +
Sbjct: 193 EENCQDGGLMVACTPSRNEITQLIITGE---WSSTRVSEALELCLDACSKLAAIMRSCLK 249
Query: 240 N 240
Sbjct: 250 E 250
>gi|318083345|ref|NP_001187695.1| exosome complex exonuclease rrp43 [Ictalurus punctatus]
gi|308323723|gb|ADO28997.1| exosome complex exonuclease rrp43 [Ictalurus punctatus]
Length = 277
Score = 92.2 bits (227), Expect = 6e-17, Method: Composition-based stats.
Identities = 41/249 (16%), Positives = 73/249 (29%), Gaps = 15/249 (6%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R GR+ + R +L A+GS LVK G+ ++ E P G+I
Sbjct: 23 RPDGRELGEFRPTTLNTGSISTADGSALVKIGNATVICGIKAELATP-TADAPDKGYIVP 81
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSV---VDLSALGSRQIIIDCDV 118
+ P + Q + + + + D
Sbjct: 82 NVDLPPLCSSRFRPGPPGEQAQVASQFIADIIDDSNIIKKEDLCIGKSKLCWVLYCDIMC 141
Query: 119 IQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQ----------VLKGHVAAISCGM 168
+ DG A I AL + + + L + + K VA+
Sbjct: 142 LDYDGNLPDACIITLLAALKNAQLPKVTINKETDLPEVDVQHKRHLQINKHPVASSFAVF 201
Query: 169 LCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIA 228
IVD E+S V ++ + ++ S + ++ A R
Sbjct: 202 DDEVIIVDPTTEEESLATALITAVTDENDQLCAFHKPG-GSSLSAEKLQGCISRAVTRNR 260
Query: 229 DLIKLQKDV 237
++ KL V
Sbjct: 261 EINKLIDRV 269
>gi|150951278|ref|XP_001387575.2| predicted protein [Scheffersomyces stipitis CBS 6054]
gi|149388461|gb|EAZ63552.2| predicted protein [Pichia stipitis CBS 6054]
Length = 241
Score = 92.2 bits (227), Expect = 6e-17, Method: Composition-based stats.
Identities = 45/243 (18%), Positives = 86/243 (35%), Gaps = 22/243 (9%)
Query: 1 MRLSGRQENQMREISLTRRVSKY-AEGSCLVKFGDTHLLTTATLE-EKVPMWIRNTKHGW 58
+R+ GR+ N++R ++GS ++ G+T ++ E N+
Sbjct: 9 LRIDGRRWNEIRNFECRINTHPNSSDGSSYIEQGNTKVICVVQGPMEPALRSQANSNEAT 68
Query: 59 ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDV 118
+ + ST R KR R +++ + R + V + I ID V
Sbjct: 69 LEVNLSVANFSTTERKKRSKSEKR----MVQLKTTLERTFQQSVMCNLYPRTLIRIDLHV 124
Query: 119 IQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLD 178
+ DGG A +AL D M D VAA++ G+ P++D++
Sbjct: 125 LSQDGGMLAACTNAMTLALIDAGVSMYDY-------------VAAMTAGLHDQTPLLDMN 171
Query: 179 YGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
E++ + V+ S + + D ++L +A + L +
Sbjct: 172 GLEENDMSTLTIGVIGKSEKLSLLML---EDKIPLDRLESVLAIAIAGSHKIRDLMDSEV 228
Query: 239 SNE 241
Sbjct: 229 RRH 231
>gi|326521482|dbj|BAK00317.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 262
Score = 92.2 bits (227), Expect = 6e-17, Method: Composition-based stats.
Identities = 44/240 (18%), Positives = 85/240 (35%), Gaps = 25/240 (10%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R GR + R + + A GS +FG T ++ + + + + G +
Sbjct: 40 RADGRSLHDCRPAFMQTGPTTAASGSAYAEFGKTKVIVSVFGPRESKKAMLYSDTGRLNC 99
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
+TG R QG ++E M+ +AL V L + + V+++
Sbjct: 100 SVSYTTFATGIRG--------QGLENKEYSGMLHKALEGAVMLHTFPKTTVDVFALVLES 151
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
G I+ A +AL D M D V ++S L I+D E
Sbjct: 152 GGSDLPIIISCASLALADAGIMMYDL-------------VTSVSVSCLGKNVIIDPTSDE 198
Query: 182 DSTIDVDANF-VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
++ D M I ++ + E ++ + L D + L ++ ++ + +
Sbjct: 199 EAWQDGGLMVSYMPARKEITQLTLTGE---WTDGKITNAVELYMDACSKLCEILRERLKD 255
>gi|1749490|dbj|BAA13803.1| unnamed protein product [Schizosaccharomyces pombe]
Length = 242
Score = 92.2 bits (227), Expect = 6e-17, Method: Composition-based stats.
Identities = 42/241 (17%), Positives = 85/241 (35%), Gaps = 21/241 (8%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE-EKVPMWIRNTKHGWI 59
+R GR+ ++MR + GS ++ G+T +L E V ++
Sbjct: 12 LRNDGRRWDEMRNFQCRFGIEPSENGSAFIELGNTKVLCIVDGPSEPVIKSKARADRTFV 71
Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119
E + ST + KR R Q + ++ QI + V+
Sbjct: 72 NVEINIASFSTIDVKKRFKSDRR----IQLQCLALQNTFEEIIQTELYPRSQISVYLHVL 127
Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179
Q DG + I +AL D ++D V + G++ ++DL+
Sbjct: 128 QDDGAVMASCINATTLALIDAGIPVKDF-------------VCCSTAGIVESDMLLDLNS 174
Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
E+S + V+ + +V +Q + D+ +++N+A + + +
Sbjct: 175 LEESALSWLTVAVLGNIKKVVYMQL---ETSMHLDYLESVMNMAIAGSEHIYNTMQSAVR 231
Query: 240 N 240
Sbjct: 232 Q 232
>gi|149635838|ref|XP_001511768.1| PREDICTED: similar to Chain C, Structure Of The Human Rna Exosome
Composed Of Rrp41, Rrp45, Rrp46, Rrp43, Mtr3, Rrp42,
Csl4, Rrp4, And Rrp40 [Ornithorhynchus anatinus]
Length = 276
Score = 92.2 bits (227), Expect = 6e-17, Method: Composition-based stats.
Identities = 42/252 (16%), Positives = 78/252 (30%), Gaps = 15/252 (5%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R GR+ + R ++ A+GS LVK G+T ++ E P G++
Sbjct: 23 RPDGRELGEFRTTTVNIGSISTADGSALVKLGNTTVICGVKAEFTAPPG-DAPNKGYVVP 81
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGS---RQIIIDCDV 118
+ P + Q + L + DL + D
Sbjct: 82 NVDLPPLCSSRFRPGPPGEEAQVASQFINDVIENSQLIAKEDLCISKGKLAWVLYCDLIC 141
Query: 119 IQADGGTRTAAITGAWVALHDCLQHME---------DCSNKFQLSQVLKGHVAAISCGML 169
+ DG A AL + + + K + ++ + A S +
Sbjct: 142 LDYDGNILDACTFALLAALKNVQLPAVVINEETGLAEVNFKQKTPLNIRAYPIATSFAIF 201
Query: 170 CGYP-IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIA 228
IVD E++ VM + G + + + + L+ A R
Sbjct: 202 DNTILIVDPTGEEENLATGTLTVVMDEEGKLCCLHKPG-GSALAGTKLQDCLSRAVTRHK 260
Query: 229 DLIKLQKDVISN 240
++ L +VI +
Sbjct: 261 EVKVLMDEVIQS 272
>gi|326429591|gb|EGD75161.1| hypothetical protein PTSG_06814 [Salpingoeca sp. ATCC 50818]
Length = 241
Score = 91.8 bits (226), Expect = 6e-17, Method: Composition-based stats.
Identities = 51/238 (21%), Positives = 86/238 (36%), Gaps = 21/238 (8%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+R GR+ N++R + + +A+GS + GDT ++ ++ + G +
Sbjct: 10 LREDGRRANELRRVEANVGMFPHADGSAYFQQGDTKVVAIVNGPKQ--GVGKAGDAGKVV 67
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
++ M ST R K R ++ E+ I S + QI I V+Q
Sbjct: 68 CDFEMAAFSTTQRRKP----LRLDRKNAELGSKIASTFESAIMTDLYPRSQIEISVQVLQ 123
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGG AI +AL D M D S + +V I+ Y
Sbjct: 124 ADGGVLAVAINAVTLALMDAGVAMTDFVCACTASVIDGTNVLDINH------------YE 171
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
+ V+ S IV + + D + + +LA L+ L K +
Sbjct: 172 ASAQGPELTIAVLPSSSTIVMAEMKSRVHG---DLYAGLQDLAIVGGTTLLPLLKKAV 226
>gi|224043308|ref|XP_002196618.1| PREDICTED: similar to exosome component 6 [Taeniopygia guttata]
Length = 276
Score = 91.8 bits (226), Expect = 7e-17, Method: Composition-based stats.
Identities = 41/252 (16%), Positives = 71/252 (28%), Gaps = 15/252 (5%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R GR+ + R ++ A+GS LVK G+T ++ E P + G+I
Sbjct: 23 RPDGRELGEFRTTTVNIGSITTADGSALVKLGNTTVICGVKAELAAPAA-DSANKGYIVP 81
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGS---RQIIIDCDV 118
+ Q + + DL + D
Sbjct: 82 NVELPSLCAERFRSGPPGEEAQAASQFIADVIENSQMIVKEDLCIANGKLAWVLYCDIIC 141
Query: 119 IQADGGTRTAAITGAWVALHDCLQHMEDCSNK----------FQLSQVLKGHVAAISCGM 168
+ DG A++ AL + + + + K VA
Sbjct: 142 LDYDGNLLDASVFALLAALKNVQLPSVTINEETGLSEVNLKQKNPLIIRKHPVATSFAIF 201
Query: 169 LCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIA 228
IVD E+ V + G + V + + + A R
Sbjct: 202 DDTLLIVDPTAEEEDLATGTVTIVTDEEGRLCSVHKPG-GSPLTGAKLQDCITRAITRHK 260
Query: 229 DLIKLQKDVISN 240
++ KL VI +
Sbjct: 261 EVKKLIDKVIKS 272
>gi|19114994|ref|NP_594082.1| exosomal 3'-to-5' phosphorolytic exoribonuclease Ski6 (predicted)
[Schizosaccharomyces pombe 972h-]
gi|21759394|sp|O42872|RRP41_SCHPO RecName: Full=Exosome complex component ski6; AltName:
Full=Ribosomal RNA-processing protein 41
gi|2706461|emb|CAA15919.1| exosomal 3'-to-5' phosphorolytic exoribonuclease Ski6 (predicted)
[Schizosaccharomyces pombe]
Length = 242
Score = 91.8 bits (226), Expect = 8e-17, Method: Composition-based stats.
Identities = 42/241 (17%), Positives = 85/241 (35%), Gaps = 21/241 (8%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE-EKVPMWIRNTKHGWI 59
+R GR+ ++MR + GS ++ G+T +L E V ++
Sbjct: 12 LRNDGRRWDEMRNFQCRIGIEPSENGSAFIELGNTKVLCIVDGPSEPVIKSKARADRTFV 71
Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119
E + ST + KR R Q + ++ QI + V+
Sbjct: 72 NVEINIASFSTIDVKKRFKSDRR----IQLQCLALQNTFEEIIQTELYPRSQISVYLHVL 127
Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179
Q DG + I +AL D ++D V + G++ ++DL+
Sbjct: 128 QDDGAVMASCINATTLALIDAGIPVKDF-------------VCCSTAGIVESDMLLDLNS 174
Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
E+S + V+ + +V +Q + D+ +++N+A + + +
Sbjct: 175 LEESALSWLTVAVLGNIKKVVYMQL---ETSMHLDYLESVMNMAIAGSEHIYNTMQSAVR 231
Query: 240 N 240
Sbjct: 232 Q 232
>gi|189208598|ref|XP_001940632.1| exosome complex exonuclease RRP41 [Pyrenophora tritici-repentis
Pt-1C-BFP]
gi|187976725|gb|EDU43351.1| exosome complex exonuclease RRP41 [Pyrenophora tritici-repentis
Pt-1C-BFP]
Length = 250
Score = 91.4 bits (225), Expect = 9e-17, Method: Composition-based stats.
Identities = 40/240 (16%), Positives = 79/240 (32%), Gaps = 10/240 (4%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE-EKVPMWIRNTKHGWI 59
+RL GR+ N++R I A+GS ++ G+T +L + T E R
Sbjct: 13 LRLDGRRWNELRRIHAQISTQAAADGSSYLEQGNTKILVSVTGPHEGRQSGQRGGADKQA 72
Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119
E + + E + R+ E++ I A V+ L I ++ ++
Sbjct: 73 KVEVEI---NFAGFSGVERRKRKSDKRTSEMEHCIRSAFEGVLLLHLYPHSTITLNIHIV 129
Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179
DG A I + +AL D M D + AA + ++
Sbjct: 130 SQDGSLLAACINASTLALIDAGIPMTDYLV-ACTAASSASASAADNASADDPLLDLNNQE 188
Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
+ +D + ++ + +ML + + + + V+
Sbjct: 189 ELELPFLTVGTLGESDKVAVCLMES-----RVRMERLESMLAVGIEGCKRMRNILDGVVK 243
>gi|213854161|ref|ZP_03382693.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar
Typhi str. M223]
Length = 86
Score = 91.4 bits (225), Expect = 9e-17, Method: Composition-based stats.
Identities = 50/85 (58%), Positives = 64/85 (75%)
Query: 7 QENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGML 66
NQ+R ++LTR +K+AEGS LV+FGDT +L TA++EE VP +++ GWITAEYGML
Sbjct: 1 SNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWITAEYGML 60
Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQ 91
PRST R REA G+QGGR+ EIQ
Sbjct: 61 PRSTHTRNAREAAKGKQGGRTMEIQ 85
>gi|302834702|ref|XP_002948913.1| hypothetical protein VOLCADRAFT_89262 [Volvox carteri f.
nagariensis]
gi|300265658|gb|EFJ49848.1| hypothetical protein VOLCADRAFT_89262 [Volvox carteri f.
nagariensis]
Length = 238
Score = 91.4 bits (225), Expect = 9e-17, Method: Composition-based stats.
Identities = 41/238 (17%), Positives = 76/238 (31%), Gaps = 22/238 (9%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R GR + R + + RV A+GS V+FG T ++ + + + T G +
Sbjct: 13 RADGRGLEEFRTVFIKTRVLSQAKGSAYVEFGTTKVMVGVFGPRQSEVKLGFTDTGRLNC 72
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
E + ++ Q + + +AL V L + +++A
Sbjct: 73 EVRLTSFASHK-----LAKSGQTQLESSAAQGLQQALEPSVQLDKFPKAVFDVSAMILEA 127
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
G IT A VAL D + D V A+ G ++D E
Sbjct: 128 GGSDLAVLITAASVALADAGVELYDL-------------VPAVQVSKQRGLLLLDPSLEE 174
Query: 182 DSTIDVDANF-VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
+ +M + + + ++ L LA L ++ +
Sbjct: 175 SGAEEGGMLVGLMPELNEVTALNVRG---LWADSEMQEGLELALGGCGQLKAAMREAL 229
>gi|291237650|ref|XP_002738745.1| PREDICTED: predicted protein-like [Saccoglossus kowalevskii]
Length = 273
Score = 91.4 bits (225), Expect = 1e-16, Method: Composition-based stats.
Identities = 39/241 (16%), Positives = 77/241 (31%), Gaps = 14/241 (5%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R GR+ N +R I L + A+GS ++ DT + +V G +T
Sbjct: 37 RHDGRKPNDIRPIFLRCGIISNAKGSAYIETKDTKVTCAVYGPRQVVRREDFKLTGTLTC 96
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
++ S R + Q +++ ++ +A+ V L QI I V+Q
Sbjct: 97 DFKFATFSCQKRQQHM-----QSSNEKDLSLIVLQAMEPAVCLEKYPRAQIDIFITVLQN 151
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
G +AAIT A AL M D Q+ +
Sbjct: 152 GGSALSAAITCASAALAAAGIEMYDVVVGCSTRQIGNT---CLVDPAYDEEYNSKTGGKN 208
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
+ ++ + + +E + ++ D + + + ++
Sbjct: 209 NGSLCLGLMPSLNQVSAFIEC------GELETEILMQSIHSCVDGCMRIYPVVRQCLTKS 262
Query: 242 V 242
+
Sbjct: 263 I 263
>gi|325969193|ref|YP_004245385.1| 3' exoribonuclease [Vulcanisaeta moutnovskia 768-28]
gi|323708396|gb|ADY01883.1| 3' exoribonuclease [Vulcanisaeta moutnovskia 768-28]
Length = 283
Score = 91.4 bits (225), Expect = 1e-16, Method: Composition-based stats.
Identities = 51/240 (21%), Positives = 91/240 (37%), Gaps = 28/240 (11%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+R+ R N RE+S+ V + A+GS LV G+T ++ +E P + G +
Sbjct: 27 VRIDNRGLNDYRELSIRVGVVRTADGSSLVSLGNTKVMAGVKVEVGKP-FEDTPDEGALI 85
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSA--------LGSRQI 112
+ P ++ + G + EI R++ RA+R L+ + +
Sbjct: 86 VNLEIAPAASPD-----IEPGPPDENAIEIARVVDRAIRHSGFLNFKSLSIVTGRHAWFL 140
Query: 113 IIDCDVIQADGGTRTAAITGAWVALHDCLQHME-----------DCSNKFQLSQVLKGHV 161
+D V+ DG A+ A AL + D SNK L+ +
Sbjct: 141 WVDIYVLNHDGNLVDASTIAAITALMNTALPKVELDPAGNILRIDRSNKSPLALNVDKLP 200
Query: 162 AAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLN 221
I+ L + +VD E+ D G++V +Q F++D M++
Sbjct: 201 LTITHAKLGNFLLVDPTREEEDLSDG-IYITGIAGGNVVAIQKV--TGAFTKDEVNYMIS 257
>gi|322792608|gb|EFZ16508.1| hypothetical protein SINV_11514 [Solenopsis invicta]
Length = 282
Score = 91.1 bits (224), Expect = 1e-16, Method: Composition-based stats.
Identities = 44/237 (18%), Positives = 83/237 (35%), Gaps = 9/237 (3%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R GR N+ R I L + A+GS ++ G+T ++ + ++P G +
Sbjct: 37 RHDGRSHNEFRNIFLKTGIVSQAKGSAYIEIGNTKIICSVFDPREIPNKTGYCVQGELFC 96
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
E+ P S R +Q +E ++ RAL V L + Q+ + VI
Sbjct: 97 EFKFAPFSHRKRK-----LHQQDAEEKEYSLILQRALEPAVCLQEFPNFQVDVYATVIDN 151
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
G AAI A +AL + M + + ++ + I
Sbjct: 152 GGSALAAAIMAASLALANAGVPMFGLVTASTVGICDQTYLVDPTDTEEAFCSIKTAQGTA 211
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
D+ + + G I E+ + + ++L + D+ L + +
Sbjct: 212 DNH-GIIVQAALPQHGQISEMFVMG---SMDMNVIEHSMDLLNEIHKDICPLLEQCL 264
>gi|224141741|ref|XP_002324223.1| predicted protein [Populus trichocarpa]
gi|222865657|gb|EEF02788.1| predicted protein [Populus trichocarpa]
Length = 243
Score = 91.1 bits (224), Expect = 1e-16, Method: Composition-based stats.
Identities = 45/248 (18%), Positives = 80/248 (32%), Gaps = 24/248 (9%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R GR +Q+R +S R V A GS GDT +L + N + I
Sbjct: 5 RDDGRSPSQLRPLSCARNVLHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKACIEV 64
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
+ +G+ G +E + ++ R L+S+ L+ + I V+
Sbjct: 65 I-------------WKPKTGQIGKLEKEFEMILKRTLQSICILTLNPNTTTSIIVQVVND 111
Query: 122 DGGTRTAAITGAWVALHDCLQHMED-----CSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
DG AI A AL D M+ C + V+ M +V
Sbjct: 112 DGALLVCAINAACAALVDAGIPMKHLAVAICCCLAEGGYVILDPTKLEEQKMRGFTYLVF 171
Query: 177 LDYGEDSTIDVDANFVM--TDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
+ + ++ + G I V S + + L + L
Sbjct: 172 PNSVVSVLPEGSSHVEGEPMEHGIITSV----THGVMSVEEYLKCLERGRAASTKLSDFL 227
Query: 235 KDVISNEV 242
+ + +++
Sbjct: 228 RRSLQSQL 235
>gi|260941676|ref|XP_002615004.1| hypothetical protein CLUG_05019 [Clavispora lusitaniae ATCC 42720]
gi|238851427|gb|EEQ40891.1| hypothetical protein CLUG_05019 [Clavispora lusitaniae ATCC 42720]
Length = 244
Score = 91.1 bits (224), Expect = 1e-16, Method: Composition-based stats.
Identities = 36/243 (14%), Positives = 78/243 (32%), Gaps = 22/243 (9%)
Query: 1 MRLSGRQENQMREISLTRRV-SKYAEGSCLVKFGDTHLLTTATLEEKVP-MWIRNTKHGW 58
+R+ GR+ N++R + A+GS ++ G+T ++ ++ N
Sbjct: 12 LRVDGRRWNELRRFECKINTHANSADGSSYIEQGNTKVMCMVHGPKEPSLRSQSNQNRAT 71
Query: 59 ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDV 118
I + ST R KR R E++ + R + I + V
Sbjct: 72 IEINLNVASFSTLERKKRNRTEKR----MVELKTTLERTFEQSILAHLYPRTLIEVHVQV 127
Query: 119 IQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLD 178
+ DGG + +AL D M D + ++ + + ++
Sbjct: 128 LAQDGGMLASITNAITLALVDAGIAMYDYVSAVNVALHDQTPL-----------LDLNTL 176
Query: 179 YGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
D + ++ ++ ++ D A+L +A + L + +
Sbjct: 177 EENDMSCLTIGVVGKSEKLAMLLLE-----DKMPLDRLEAVLGIAIAGGHRIRDLMDEEV 231
Query: 239 SNE 241
Sbjct: 232 RRH 234
>gi|307594959|ref|YP_003901276.1| 3' exoribonuclease [Vulcanisaeta distributa DSM 14429]
gi|307550160|gb|ADN50225.1| 3' exoribonuclease [Vulcanisaeta distributa DSM 14429]
Length = 283
Score = 90.7 bits (223), Expect = 1e-16, Method: Composition-based stats.
Identities = 51/259 (19%), Positives = 96/259 (37%), Gaps = 28/259 (10%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+R+ R N RE+S+ V K A+GS LV G+T ++ +E P + G +
Sbjct: 27 VRIDNRGLNDYRELSIRVNVVKTADGSSLVSLGNTKVMAGVKVEVGKP-FEDTPDEGALI 85
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSA--------LGSRQI 112
+ P ++ + G + EI R++ RA+R L + +
Sbjct: 86 VNLEIAPTASPD-----IEPGPPDENAIEIARVVDRAIRHSGFLDFKSLSIVTGKHAWFL 140
Query: 113 IIDCDVIQADGGTRTAAITGAWVALHDCLQHME-----------DCSNKFQLSQVLKGHV 161
+D V+ DG A+ A AL + D S + L
Sbjct: 141 WVDIYVLNHDGNLVDASTIAAVAALMNTALPKVELDPAGNILKIDRSARSPLRLNTDKLP 200
Query: 162 AAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLN 221
I+ + + +VD E+ D G++V +Q F++D +++
Sbjct: 201 LTITYVKIGNFLLVDPTREEEDLSDG-VYITGIAGGNVVAIQKV--TGAFTKDEINNIIS 257
Query: 222 LAKDRIADLIKLQKDVISN 240
+ ++ L L + ++N
Sbjct: 258 NSVNQYVKLRNLIMNAMAN 276
>gi|241954284|ref|XP_002419863.1| 3'-to-5' phosphorolytic exoribonuclease, putative; exosome complex
exonuclease, putative; ribosomal RNA processing protein,
putative [Candida dubliniensis CD36]
gi|223643204|emb|CAX42078.1| 3'-to-5' phosphorolytic exoribonuclease, putative [Candida
dubliniensis CD36]
Length = 240
Score = 90.7 bits (223), Expect = 2e-16, Method: Composition-based stats.
Identities = 35/243 (14%), Positives = 79/243 (32%), Gaps = 22/243 (9%)
Query: 1 MRLSGRQENQMREISLTRRVSKYA-EGSCLVKFGDTHLLTTATLE-EKVPMWIRNTKHGW 58
+R+ GR+ N++R + +GS V+ G+T ++ T E ++++
Sbjct: 9 LRIDGRRWNELRRFECRINTHPNSSDGSSYVEQGNTKVMCTVQGPIEPTLRSQQHSERAN 68
Query: 59 ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDV 118
I + ST R KR R + + V ++ I+I+ V
Sbjct: 69 IEVNLNIASFSTFERKKRSRNERRLVELK----TTLEKTFEESVMINLYPRTNIVINVQV 124
Query: 119 IQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLD 178
+ DGG I +AL D M D + + + ++ + +
Sbjct: 125 LCQDGGMLATIINSITLALIDAGISMYDYVSGVSCGLYDQTPLLDVNNLEEHDMSCLTIG 184
Query: 179 YGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
++ ++ ++ D ++L++ + +L +
Sbjct: 185 -----------VIGKSEKLALLLLE-----DKMPLDRLESVLSIGIAGSHKIRELMDQEV 228
Query: 239 SNE 241
Sbjct: 229 RKH 231
>gi|242032199|ref|XP_002463494.1| hypothetical protein SORBIDRAFT_01g000760 [Sorghum bicolor]
gi|241917348|gb|EER90492.1| hypothetical protein SORBIDRAFT_01g000760 [Sorghum bicolor]
Length = 239
Score = 90.7 bits (223), Expect = 2e-16, Method: Composition-based stats.
Identities = 44/246 (17%), Positives = 79/246 (32%), Gaps = 23/246 (9%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R GR NQ+R S T A GS GDT +L + P + +
Sbjct: 6 RADGRNPNQLRPFSCTGNPLHRAHGSARWAQGDTVVLAAVYGPK--PGTRKGENPEKASI 63
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
E P +G+ G + +E + + R L+S+ L+ + + V+
Sbjct: 64 EVVWKP-----------KTGQIGRQEREYEMTLKRTLQSICLLTVHPNTTTSVVLQVVGD 112
Query: 122 DGGTRTAAITGAWVALHDCLQHME------DCSNKFQLSQVLKGHVAAISCGMLCGYPIV 175
DG AI + AL M+ C + +L A + +
Sbjct: 113 DGSLLPCAINASCAALAFAGIPMKHLAVAICCGVMDNGAVILDTSTAEEQQAKSFAHLVF 172
Query: 176 DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
+ D ++ G I + T S+D++F + + + +
Sbjct: 173 PNSRKSVDSKDPMQKDEESERGLISCI----THGTMSEDNYFNCIERGIAASSKISDFMR 228
Query: 236 DVISNE 241
+ E
Sbjct: 229 KTLQKE 234
>gi|209877665|ref|XP_002140274.1| 3' exoribonuclease protein [Cryptosporidium muris RN66]
gi|209555880|gb|EEA05925.1| 3' exoribonuclease protein, putative [Cryptosporidium muris RN66]
Length = 295
Score = 90.7 bits (223), Expect = 2e-16, Method: Composition-based stats.
Identities = 38/246 (15%), Positives = 83/246 (33%), Gaps = 7/246 (2%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+R R N++R I++ +GS G T +L T + + +T
Sbjct: 45 IRNDSRIPNEVRPINIKTGTVATCDGSAYFSIGRTRVLCTINGPKLTKSSLNEIG-LSVT 103
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRS----QEIQRMIGRALRSVVDLSALGSRQIIIDC 116
+Y + P R + + + ++S++ I
Sbjct: 104 VDYRLSPFCKKMRQYGNINKSNLNTDYKAEEKYQSLTLEKVIQSIICREKYTRMSIDCYI 163
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+I+ DG +AAI+ +AL D + + + + C +C
Sbjct: 164 YIIEDDGCALSAAISCLSLALCDAKIEIIGLFSSVTVIAIPNNSEVKSDCKYICILDPTY 223
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATF-SQDHFFAMLNLAKDRIADLIKLQK 235
+ +++ + + + + V V SA+ + F M +LA+ + K
Sbjct: 224 DEINLENSNISELSIGLCTLRNQV-VHLSAKGSAFGDIQTSKLMFSLAEAACTAITNEMK 282
Query: 236 DVISNE 241
+ + +E
Sbjct: 283 EHLISE 288
>gi|330917879|ref|XP_003297997.1| hypothetical protein PTT_08574 [Pyrenophora teres f. teres 0-1]
gi|311329045|gb|EFQ93909.1| hypothetical protein PTT_08574 [Pyrenophora teres f. teres 0-1]
Length = 250
Score = 90.7 bits (223), Expect = 2e-16, Method: Composition-based stats.
Identities = 40/240 (16%), Positives = 79/240 (32%), Gaps = 10/240 (4%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE-EKVPMWIRNTKHGWI 59
+RL GR+ N++R I A+GS ++ G+T +L + T E R
Sbjct: 13 LRLDGRRWNELRRIHAQISTQAAADGSSYLEQGNTKILVSVTGPHEGRQSGQRGGADKQA 72
Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119
E + + E + R+ E++ I A V+ L I ++ ++
Sbjct: 73 KVEVEI---NFAGFSGVERRKRKSDKRTSEMEHCIRSAFEGVLLLHLYPHSIITLNIHIV 129
Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179
DG A I + +AL D M D + AA + ++
Sbjct: 130 SQDGSLLAACINASTLALIDAGIPMTDYLV-ACTAASSASASAADNASADDPLLDLNNQE 188
Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
+ +D + ++ + +ML + + + + V+
Sbjct: 189 ELELPFLTVGTLGDSDKVAVCLMES-----RVRMERLESMLAVGIEGCKRMRSILDGVVK 243
>gi|291000756|ref|XP_002682945.1| 3'-5' exoribonuclease/RNA-binding protein-like protein [Naegleria
gruberi]
gi|284096573|gb|EFC50201.1| 3'-5' exoribonuclease/RNA-binding protein-like protein [Naegleria
gruberi]
Length = 300
Score = 90.7 bits (223), Expect = 2e-16, Method: Composition-based stats.
Identities = 38/242 (15%), Positives = 81/242 (33%), Gaps = 20/242 (8%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGD-THLLTTATLEEKVPMWIRNTKHGWIT 60
R R ++ R + + V K A GS +++ + T ++ + ++ + G I
Sbjct: 65 RQDNRTCDKFRNVFMQVGVIKQARGSAYMEYQNGTKVICSVYGPRQISARNEFSDIGAIQ 124
Query: 61 AEYGMLPRST----GNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
EY + + S E + AL + L I + C
Sbjct: 125 CEYRVANFAYQSSNNQSTFLNNSSNNNRRHHVENSIHLREALEVSIRLDKYPKSVIDVYC 184
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
++Q DG +AAI+ A +AL + M D + A + + +
Sbjct: 185 FILQDDGSALSAAISCASLALANAGIEMYDMVS------------ACTTSELEGHIIVDP 232
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ M++ + ++ ++ S ++L D + L +L +
Sbjct: 233 TNLEYKYASGGMVCAYMSNLNQVTQL---SQVGDMSYQKIGEAMDLCIDGCSKLNQLMQQ 289
Query: 237 VI 238
+
Sbjct: 290 CL 291
>gi|224131852|ref|XP_002321194.1| predicted protein [Populus trichocarpa]
gi|222861967|gb|EEE99509.1| predicted protein [Populus trichocarpa]
Length = 287
Score = 90.7 bits (223), Expect = 2e-16, Method: Composition-based stats.
Identities = 40/261 (15%), Positives = 80/261 (30%), Gaps = 24/261 (9%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+R GR+ + R IS+ V A GS ++ G T ++ + E P ++ G +
Sbjct: 20 LRSDGRKRDAYRPISIETGVIPQANGSARIRIGATEVIASVKAELGRPNALQP-DKGKVA 78
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMI----GRALRSVVDLSALGSRQIIIDC 116
P + R + ++ G + + +I D
Sbjct: 79 IFVDCSPVAEPMFEGRGGEELSAELSVALQRCLLGGKSGAGAGIDLSSLIVAEGKICWDL 138
Query: 117 DVIQADGGTRTAAITGAWVALHDCL------------------QHMEDCSNKFQLSQVLK 158
+ + + A+ L Q D S++ +
Sbjct: 139 YIDGLVISSDGNLLDALGAAIKAALSNTGIPRVQVAAGASGDEQPEVDISDEEFMQFDTS 198
Query: 159 GHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFA 218
G ++ + + IVD E+S + + ++ G I + A
Sbjct: 199 GVPVIVTLTKVGRHYIVDATSEEESQMSSAVSVSISRKGQICGLSKRG-SAGLDPSVISD 257
Query: 219 MLNLAKDRIADLIKLQKDVIS 239
M+++A+ LI IS
Sbjct: 258 MISVARHISEQLINKLDSEIS 278
>gi|330982939|gb|EGH81042.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas syringae
pv. aptata str. DSM 50252]
Length = 275
Score = 90.3 bits (222), Expect = 2e-16, Method: Composition-based stats.
Identities = 21/89 (23%), Positives = 33/89 (37%), Gaps = 4/89 (4%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR +R +++ V GS L G+T L ATL + ++ + K
Sbjct: 186 RIDGRDTRTVRPLNIEVGVLPKTHGSALFTRGETQALVVATLGTARDAQLLDTLEGEKKD 245
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGR 86
Y P S G + R+ G
Sbjct: 246 PFMLHYNFPPFSVGECGRMGGAGRREIGH 274
Score = 52.5 bits (124), Expect = 5e-05, Method: Composition-based stats.
Identities = 13/92 (14%), Positives = 29/92 (31%), Gaps = 4/92 (4%)
Query: 150 KFQLSQVLKGHVAAISCGMLCGY-PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAER 208
G V A +++ Y + +D T ++ V+ A+
Sbjct: 8 LAISGIPFDGPVGAARVAFHESTGYLLNPTYEQLQASSLDMVVAGTSE-AVLMVESEAKE 66
Query: 209 ATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
++D + A D +I K++ +
Sbjct: 67 --LTEDQMLGAVLFAHDEFQVVINAIKELAAE 96
>gi|68466049|ref|XP_722799.1| likely exosome component Ski6p [Candida albicans SC5314]
gi|68466344|ref|XP_722654.1| likely exosome component Ski6p [Candida albicans SC5314]
gi|46444644|gb|EAL03917.1| likely exosome component Ski6p [Candida albicans SC5314]
gi|46444799|gb|EAL04071.1| likely exosome component Ski6p [Candida albicans SC5314]
Length = 240
Score = 90.3 bits (222), Expect = 2e-16, Method: Composition-based stats.
Identities = 36/243 (14%), Positives = 80/243 (32%), Gaps = 22/243 (9%)
Query: 1 MRLSGRQENQMREISLTRRVSKYA-EGSCLVKFGDTHLLTTATLEEKVP-MWIRNTKHGW 58
+R+ GR+ N++R + +GS V+ G+T ++ T + ++++
Sbjct: 9 LRIDGRRWNELRRFECRINTHPNSSDGSSYVEQGNTKVMCTVQGPIEPALRSQQHSERAN 68
Query: 59 ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDV 118
I + ST R KR R + + V ++ I+I+ V
Sbjct: 69 IEVNLNIASFSTFERKKRSRNERRLVELK----TTLEKTFEESVMINLYPRTNIVINVQV 124
Query: 119 IQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLD 178
+ DGG A I +AL D M D + + + ++
Sbjct: 125 LCQDGGMLAAVINSITLALIDAGISMYDYVSGVSCGLYDQTPLLDVNN-----------L 173
Query: 179 YGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
D + ++ ++ ++ D ++L++ + +L +
Sbjct: 174 EEHDMSCLTVGVIGKSEKLALMLLE-----DKMPLDRLESVLSIGIAGSHKIRELMDQEV 228
Query: 239 SNE 241
Sbjct: 229 RKH 231
>gi|113197990|gb|AAI21334.1| hypothetical LOC496941 [Xenopus (Silurana) tropicalis]
Length = 291
Score = 90.3 bits (222), Expect = 2e-16, Method: Composition-based stats.
Identities = 35/258 (13%), Positives = 69/258 (26%), Gaps = 19/258 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+R GR R I + V GS VK G T +L E P + G++
Sbjct: 22 LRTDGRGCEDYRCIEVETDVVSNTTGSARVKIGHTDVLVGVKAEMGTPK-LERPGEGYLE 80
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRA---LRSVVDLSALGSRQIIIDCD 117
+T R + R+ L S+ + +D
Sbjct: 81 FFVDCSANATPEFEGRGGEELGAEIAFMLYKIFDNRSSIDLESLCIQEREHCWVLYVDVL 140
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDC-------SNKFQLSQVLKG-------HVAA 163
+++ G AL + +
Sbjct: 141 LLECGGNLFDTISVAVKAALFNARIPKVRILEDDEGGKDFELSDDPYDCVRLNVVNVPCI 200
Query: 164 ISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLA 223
++ + +VD E++ +T G + ++ + + + F M+
Sbjct: 201 VTLSRIGHRHVVDATLQEEACSVASLLIAVTSKGILTCMRKIGK-GSLDPESIFEMIETG 259
Query: 224 KDRIADLIKLQKDVISNE 241
K L + ++ E
Sbjct: 260 KRVAKSLHTSLQSALNQE 277
>gi|56970613|gb|AAH88546.1| LOC496941 protein [Xenopus (Silurana) tropicalis]
Length = 289
Score = 90.3 bits (222), Expect = 2e-16, Method: Composition-based stats.
Identities = 35/258 (13%), Positives = 69/258 (26%), Gaps = 19/258 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+R GR R I + V GS VK G T +L E P + G++
Sbjct: 20 LRTDGRGCEDYRCIEVETDVVSNTTGSARVKIGHTDVLVGVKAEMGTPK-LERAGEGYLE 78
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRA---LRSVVDLSALGSRQIIIDCD 117
+T R + R+ L S+ + +D
Sbjct: 79 FFVDCSANATPEFEGRGGEELGAEIAFMLYKIFDNRSSIDLESLCIQEREHCWVLYVDVL 138
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDC-------SNKFQLSQVLKG-------HVAA 163
+++ G AL + +
Sbjct: 139 LLECGGNLFDTISVAVKAALFNARIPKVRILEDDEGGKDFELSDDPYDCVRLNVVNVPCI 198
Query: 164 ISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLA 223
++ + +VD E++ +T G + ++ + + + F M+
Sbjct: 199 VTLSRIGHRHVVDATLQEEACSVASLLIAVTSKGILTCMRKIGK-GSLDPESIFEMIETG 257
Query: 224 KDRIADLIKLQKDVISNE 241
K L + ++ E
Sbjct: 258 KRVAKSLHTSLQSALNQE 275
>gi|225715750|gb|ACO13721.1| Exosome complex exonuclease MTR3 [Esox lucius]
Length = 277
Score = 90.3 bits (222), Expect = 2e-16, Method: Composition-based stats.
Identities = 43/244 (17%), Positives = 83/244 (34%), Gaps = 14/244 (5%)
Query: 2 RLSGRQEN--QMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIR-NTKHGW 58
R+ GRQ +R + + + A+GS ++ G+T L+ ++ + K G
Sbjct: 36 RVDGRQRGQVDVRSVFVRCGLISQAKGSAYIEAGNTKLICCVYGPREMERKDETDMKSGR 95
Query: 59 ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDV 118
+ + P S R S +++ M+ +LR V L QI ++ V
Sbjct: 96 LMTDMRFAPFSCRERGSWIQGS-----DEKDLSLMLLESLRPGVCLHKYPRSQIEVNVMV 150
Query: 119 IQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLD 178
++ DG A+T A +AL D M D + Q ++ + G +
Sbjct: 151 LENDGSVLAHAVTCASMALADAGIEMYDLVLGCSIRQESATYLIDPTYLEENGCNLASGS 210
Query: 179 YGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
+ I +Q E +D + + L + + +
Sbjct: 211 GDN---FGSLTVAFLPSLNQISGLQSDGEMG---EDILTGGVRTCIEGCFKLYPVIQQAL 264
Query: 239 SNEV 242
+ V
Sbjct: 265 TKAV 268
>gi|310798773|gb|EFQ33666.1| 3' exoribonuclease family protein [Glomerella graminicola M1.001]
Length = 266
Score = 90.3 bits (222), Expect = 2e-16, Method: Composition-based stats.
Identities = 40/241 (16%), Positives = 79/241 (32%), Gaps = 9/241 (3%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+R+ GR+ N++R + R + A+GS ++ G T ++ T + P
Sbjct: 13 LRVDGRRWNELRRLHAQIRTQEAADGSSYLEMGHTKVMCVVTGPTE-PQRRGGAGGQTKE 71
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
A + G GR R+QE++ I +A+ + + I I V+
Sbjct: 72 AAVTVNLVVAGFSSVDRRKRGRNDKRTQELEATIAKAVSANLHTHLFPHSSISISLHVLS 131
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
DG A + + +AL D M D A + ++
Sbjct: 132 QDGSLLAALLNASTLALIDAGIPMTDY---IAACTAGSTSTYAAADDGADPLLDLNTQEE 188
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
++ +TD ++ + ML + D + + V+
Sbjct: 189 QELPYMTVGTLGLTDRVAVLVCES-----RVQVSRLEGMLAVGVDGCKQVRQFMDRVVKE 243
Query: 241 E 241
+
Sbjct: 244 K 244
>gi|312211270|emb|CBX91355.1| similar to exosome complex exonuclease RRP41 [Leptosphaeria
maculans]
Length = 280
Score = 90.3 bits (222), Expect = 2e-16, Method: Composition-based stats.
Identities = 40/240 (16%), Positives = 82/240 (34%), Gaps = 8/240 (3%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+RL GR+ N++R I A+GS ++ G+T +L + T + +
Sbjct: 13 LRLDGRRWNELRRIHAQISTQAAADGSSYLEMGNTKILVSVTGPAEGRQSGQRGGQNGQG 72
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
+ + + + R+ E++ + A V+ L I ++ +I
Sbjct: 73 KVEVEI--NFAGFSGVDRRKRKSDKRTSEMEHCLRSAFEGVLLLHLYPHSTITLNIHIIS 130
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
DG A I A +AL D M D A+ + P++DL+
Sbjct: 131 QDGSLLAACINAATLALIDAGIPMSDY---LVACTAASSASASAADNASADDPLLDLNNQ 187
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
E+ + + +S + + + ML + + + + V+
Sbjct: 188 EELELPFLTVATLGESDKVSVCIMESRVR---MERLEGMLAVGIEGCKRMRGILDGVLRR 244
>gi|2815604|gb|AAC39558.1| Opa-interacting protein OIP2 [Homo sapiens]
Length = 265
Score = 89.9 bits (221), Expect = 2e-16, Method: Composition-based stats.
Identities = 38/242 (15%), Positives = 71/242 (29%), Gaps = 15/242 (6%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R GR+ + R ++ A+GS LVK G+T ++ E P G++
Sbjct: 21 RPDGRELGEFRTTTVNIGSISTADGSALVKLGNTTVICGVKAEFAAPST-DAPDKGYVVP 79
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGS---RQIIIDCDV 118
+ P + Q + + DL + D
Sbjct: 80 NVDLPPLCSSRFRSGPPGEEAQVASQFIADVIENSQIIQKEDLCISPGKLVWVLYCDLIC 139
Query: 119 IQADGGTRTAAITGAWVALHDCLQHME---------DCSNKFQLSQVLKGHVAAISCGML 169
+ DG A AL + + + K + ++ H A S +
Sbjct: 140 LDYDGNILDACTFALLAALKNVQLPEVTINEETALAEVNLKKKSYLNIRTHPVATSFAVF 199
Query: 170 CGY-PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIA 228
IVD E+ VM + G + + + + ++ A R
Sbjct: 200 DDTLLIVDPTGEEEHLATGTLTIVMDEEGKLCCLHKPG-GSGLTGAKLQDCMSRAVTRHK 258
Query: 229 DL 230
++
Sbjct: 259 EV 260
>gi|82524833|ref|NP_001032342.1| exosome component 7 [Xenopus (Silurana) tropicalis]
gi|89267936|emb|CAJ82816.1| exosome component 7 [Xenopus (Silurana) tropicalis]
Length = 291
Score = 89.9 bits (221), Expect = 3e-16, Method: Composition-based stats.
Identities = 35/258 (13%), Positives = 69/258 (26%), Gaps = 19/258 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+R GR R I + V GS VK G T +L E P + G++
Sbjct: 22 LRTDGRGCEDYRCIEVETDVVSNTTGSARVKIGHTDVLVGVKAEMGTPK-LERAGEGYLE 80
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRA---LRSVVDLSALGSRQIIIDCD 117
+T R + R+ L S+ + +D
Sbjct: 81 FFVDCSANATPEFEGRGGEELGAEIAFMLYKIFDNRSSIDLESLCIQEREHCWVLYVDVL 140
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDC-------SNKFQLSQVLKG-------HVAA 163
+++ G AL + +
Sbjct: 141 LLECGGNLFDTISVAVKAALFNARIPKVRILEDDEGGKDFELSDDPYDCVRLNVVNVPCI 200
Query: 164 ISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLA 223
++ + +VD E++ +T G + ++ + + + F M+
Sbjct: 201 VTLSRIGHRHVVDATLQEEACSVASLLIAVTSKGILTCMRKIGK-GSLDPESIFEMIETG 259
Query: 224 KDRIADLIKLQKDVISNE 241
K L + ++ E
Sbjct: 260 KRVAKSLHTSLQSALNQE 277
>gi|196005309|ref|XP_002112521.1| hypothetical protein TRIADDRAFT_25085 [Trichoplax adhaerens]
gi|190584562|gb|EDV24631.1| hypothetical protein TRIADDRAFT_25085 [Trichoplax adhaerens]
Length = 266
Score = 89.9 bits (221), Expect = 3e-16, Method: Composition-based stats.
Identities = 42/249 (16%), Positives = 74/249 (29%), Gaps = 15/249 (6%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+R R Q R+ ++ A GS LVK G+T +L E VP + + HG+I
Sbjct: 18 IRPDRRTFKQFRKTTVNVGSITTANGSALVKIGNTTMLCGIKTEFAVPK-LDSPDHGYIV 76
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGS---RQIIIDCD 117
+ P + Q + L ++ DL + I ID
Sbjct: 77 PNVDLPPLCSYRFRPGPPGEQAQVCSQYLADIIKSCNLINLKDLCIVKEKLAWVIYIDLL 136
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLK----------GHVAAISCG 167
+ DG A++ AL + + V K +++
Sbjct: 137 CLDCDGNVLDASVIAMLAALRSAKFPKVEIDEEVDKPIVSKDESFSLNVNDCPISSTFVL 196
Query: 168 MLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRI 227
+ D E++ + + + V + + LA R
Sbjct: 197 FDKNLILADPTSEEENLSSGYLTITVNNDDGLSNVLKPG-GRGVNDAELNECITLAIKRA 255
Query: 228 ADLIKLQKD 236
D+ L
Sbjct: 256 RDMRDLLSK 264
>gi|154295932|ref|XP_001548399.1| hypothetical protein BC1G_13119 [Botryotinia fuckeliana B05.10]
gi|150843771|gb|EDN18964.1| hypothetical protein BC1G_13119 [Botryotinia fuckeliana B05.10]
Length = 261
Score = 89.9 bits (221), Expect = 3e-16, Method: Composition-based stats.
Identities = 32/240 (13%), Positives = 69/240 (28%), Gaps = 4/240 (1%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+RL GR+ N++R ++ ++GS + G+T +L T T G
Sbjct: 13 LRLDGRRWNELRRLTAQISTQPSSDGSSYLSMGNTQVLCTVTGPCDPSKLRSIGGGGSNN 72
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
A R + V ++ GR+ + + + L + L + +
Sbjct: 73 AGEKAEVRVEISFAGFAGVDRKKYGRNDKRIQELSNTLSTTFTPHLLTTLTSHSTILISL 132
Query: 121 ADGGTRTAAITGAWVALHDCLQ-HMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179
+ ++ A L + + + ++L
Sbjct: 133 HILSLDGSLLSALINASTLALIDAGIPMPSYICACTAGSTSSYSSNDEKADPLLDLNLGE 192
Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
++ A D +V + ML + D + ++ VI
Sbjct: 193 EQELPFLTVATAGEGDGDGVVALVM---ETRVQAGRLEGMLAVGVDGCKQVREILDGVIR 249
>gi|284793943|pdb|3HKM|A Chain A, Crystal Structure Of Rice(Oryza Sativa) Rrp46
gi|284793944|pdb|3HKM|B Chain B, Crystal Structure Of Rice(Oryza Sativa) Rrp46
gi|284793945|pdb|3HKM|C Chain C, Crystal Structure Of Rice(Oryza Sativa) Rrp46
Length = 246
Score = 89.9 bits (221), Expect = 3e-16, Method: Composition-based stats.
Identities = 41/246 (16%), Positives = 80/246 (32%), Gaps = 23/246 (9%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R GR NQ+R S TR A GS GDT +L + P + +
Sbjct: 5 RADGRNPNQLRPFSCTRNPLDRAHGSARWAQGDTIVLAAVYGPK--PGTRKGENPEKASI 62
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
E P + G+ G + +E + + R L+S+ L+ + + V+
Sbjct: 63 EVVWKPMT-----------GQIGKQEKEYEMTLKRTLQSICLLTVHPNTTTSVILQVVGN 111
Query: 122 DGGTRTAAITGAWVALHDCLQHMED------CSNKFQLSQVLKGHVAAISCGMLCGYPIV 175
DG AI AL ++ C +L + A + +
Sbjct: 112 DGSLLPCAINACCAALVFAGIPLKHLAVAIGCGVLEDGEVILDTNKAEEQQLKSFAHLVF 171
Query: 176 DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
S+ + + ++ G I + S++ +F+ + + + +
Sbjct: 172 PNSRKSASSKEPNQKEEDSERGLITSI----THGVMSEEDYFSCIERGLAASSRISDFMR 227
Query: 236 DVISNE 241
+ +
Sbjct: 228 TTLQKQ 233
>gi|218509466|ref|ZP_03507344.1| ribonuclease PH [Rhizobium etli Brasil 5]
Length = 60
Score = 89.9 bits (221), Expect = 3e-16, Method: Composition-based stats.
Identities = 38/58 (65%), Positives = 47/58 (81%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW 58
MR SGR+ +QMR++S R SK+AEGSCLVKFGDTH+L TA+LE+K P W+RNT GW
Sbjct: 1 MRPSGRKTDQMRKVSFERNFSKHAEGSCLVKFGDTHVLCTASLEDKTPPWLRNTAKGW 58
>gi|115456671|ref|NP_001051936.1| Os03g0854200 [Oryza sativa Japonica Group]
gi|75243278|sp|Q84T68|EXOS5_ORYSJ RecName: Full=Exosome complex exonuclease RRP46 homolog; AltName:
Full=Exosome component 5; AltName: Full=Ribosomal
RNA-processing protein 46; Short=oRrp46
gi|57222448|gb|AAO66540.2| putative exosome component [Oryza sativa Japonica Group]
gi|108712165|gb|ABF99960.1| 3' exoribonuclease family, domain 1 containing protein, expressed
[Oryza sativa Japonica Group]
gi|113550407|dbj|BAF13850.1| Os03g0854200 [Oryza sativa Japonica Group]
gi|215697262|dbj|BAG91256.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 238
Score = 89.9 bits (221), Expect = 3e-16, Method: Composition-based stats.
Identities = 41/246 (16%), Positives = 80/246 (32%), Gaps = 23/246 (9%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R GR NQ+R S TR A GS GDT +L + P + +
Sbjct: 5 RADGRNPNQLRPFSCTRNPLDRAHGSARWAQGDTIVLAAVYGPK--PGTRKGENPEKASI 62
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
E P + G+ G + +E + + R L+S+ L+ + + V+
Sbjct: 63 EVVWKPMT-----------GQIGKQEKEYEMTLKRTLQSICLLTVHPNTTTSVILQVVGN 111
Query: 122 DGGTRTAAITGAWVALHDCLQHMED------CSNKFQLSQVLKGHVAAISCGMLCGYPIV 175
DG AI AL ++ C +L + A + +
Sbjct: 112 DGSLLPCAINACCAALVFAGIPLKHLAVAIGCGVLEDGEVILDTNKAEEQQLKSFAHLVF 171
Query: 176 DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
S+ + + ++ G I + S++ +F+ + + + +
Sbjct: 172 PNSRKSASSKEPNQKEEDSERGLITSI----THGVMSEEDYFSCIERGLAASSRISDFMR 227
Query: 236 DVISNE 241
+ +
Sbjct: 228 TTLQKQ 233
>gi|307207928|gb|EFN85487.1| Exosome complex exonuclease RRP43 [Harpegnathos saltator]
Length = 279
Score = 89.9 bits (221), Expect = 3e-16, Method: Composition-based stats.
Identities = 46/254 (18%), Positives = 75/254 (29%), Gaps = 19/254 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+R GR+ R IS+ A+ S + K G T ++ E +P + G+I
Sbjct: 22 IRPDGRKFLSFRPISINVSSIVQADSSAIFKLGSTTVVCGIKAELAIPKT-DTPECGYII 80
Query: 61 AEYGMLPRSTGNRVKREAVSG-----RQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115
+ P + + + I L+ + + D
Sbjct: 81 PNVELSPLCSPKFRPGPPSEQAQVISKLIDIILKNSTAID--LKDLCICKRKLVWVLYCD 138
Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDC---------SNKFQLSQVLKGHVAAISC 166
+ +G A AL + K + V+K +IS
Sbjct: 139 MLCLNYNGSVIDACTGALTAALKTLTLPEVNYNLETGVTVVHPKKRKPFVMKMLPVSISF 198
Query: 167 GML-CGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKD 225
+ IVD E+S + VM I V SQ F + +AK
Sbjct: 199 AIFEKQMLIVDPTDEEESLSLGRLSVVMDSEEEICYVHKPG-GIPISQHLFSKAVEIAKT 257
Query: 226 RIADLIKLQKDVIS 239
R + L IS
Sbjct: 258 RADLVRSLIHAAIS 271
>gi|302791854|ref|XP_002977693.1| hypothetical protein SELMODRAFT_176463 [Selaginella moellendorffii]
gi|300154396|gb|EFJ21031.1| hypothetical protein SELMODRAFT_176463 [Selaginella moellendorffii]
Length = 291
Score = 89.9 bits (221), Expect = 3e-16, Method: Composition-based stats.
Identities = 49/263 (18%), Positives = 79/263 (30%), Gaps = 24/263 (9%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+R GR + R S++ A+GS LVK G+T +L A LE P G ++
Sbjct: 27 VRPDGRPLTRSRPTSVSFNAVSSADGSALVKIGNTTMLAGAKLETMEPAA-DTPDQGCLS 85
Query: 61 AEYGMLPRSTGNRVKREAVSGR------------------QGGRSQEIQRMIGRALRSVV 102
++ M P + S + V
Sbjct: 86 VDFVMPPICSPRVRPGRPAEEAYVITEQLQNALLSSGVVDLRELSIVSGKAAWMIYLDVY 145
Query: 103 DLSALGSRQIIIDCDVIQADGGTRTAAITGA-----WVALHDCLQHMEDCSNKFQLSQVL 157
L A GS + A + AI A D + L
Sbjct: 146 CLDADGSLLDAALLASVAALAHLQVPAICVRSEGKITKAPPDAQASSDGIEFTQPRRLNL 205
Query: 158 KGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFF 217
A++ M I D E++ +D ++ S I+ + + T S
Sbjct: 206 GEFPFALTVAMNQKSLIADPTAEEEAILDTKMIVILNSSQKIIALHKAGGSTTASTATIQ 265
Query: 218 AMLNLAKDRIADLIKLQKDVISN 240
L LA R L K+ ++ +
Sbjct: 266 DCLALAMRRRKTLQKVLEEALRK 288
>gi|91079418|ref|XP_967497.1| PREDICTED: similar to exosome complex exonuclease rrp42 (ribosomal
RNA processing protein 42 [Tribolium castaneum]
gi|270003471|gb|EEZ99918.1| hypothetical protein TcasGA2_TC002710 [Tribolium castaneum]
Length = 285
Score = 89.5 bits (220), Expect = 3e-16, Method: Composition-based stats.
Identities = 35/257 (13%), Positives = 74/257 (28%), Gaps = 20/257 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
R+ GR+ R I L + +A GS ++ +T +L +E VP + K G +
Sbjct: 19 FRVDGREREDYRPIELETNIVSHAFGSARLRLANTDVLVAVKIEVDVP-YPERPKEGKLE 77
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRA---LRSVVDLSALGSRQIIIDCD 117
+T + R + L + L +I +D
Sbjct: 78 FFVDCSANATPDFEGRGGEDLAIEISNSLSAAYKSPEVFDLTKLCILKGHKCWKIFVDIL 137
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGH--------------VAA 163
+++ G A AL D + + ++
Sbjct: 138 LLECGGNLYDAVSIAVKAALWDTRIPLVKSVTVDGNNVDMEVSDELHDCQKLDVTAAPIM 197
Query: 164 ISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLA 223
++ + IVD + E+ ++ +Q + + L +
Sbjct: 198 VTVCKIGEQCIVDPNVAEELCSVGAVVIAVSKDKFSTVLQIGS--GSLHPQTLLECLQMG 255
Query: 224 KDRIADLIKLQKDVISN 240
+ L + + +S
Sbjct: 256 EKVAQRLSEALTETLSE 272
>gi|217073740|gb|ACJ85230.1| unknown [Medicago truncatula]
Length = 286
Score = 89.5 bits (220), Expect = 3e-16, Method: Composition-based stats.
Identities = 44/263 (16%), Positives = 75/263 (28%), Gaps = 26/263 (9%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+R GR+ R I + V A GS V+ G T ++ + E P ++ K
Sbjct: 20 LRCDGRKRLTYRPILVETGVIPQANGSARVRIGATEVIASVKAELGKPSLMQPDKGKVSI 79
Query: 61 AEYGMLPRSTGNRVKREAV---------SGRQGGRSQEIQRMIGRALRSVVDLSALGSRQ 111
+ G I R+ VV+
Sbjct: 80 YIDCSSTAEPAFEGRGADWLSADLSNALQRCLLGAKSGAGAAIDRSSLVVVEGKIC--WD 137
Query: 112 IIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGH----------- 160
+ ID V+ +DG VAL + + +
Sbjct: 138 LYIDGLVVSSDGNLLDTLGAAIKVALSSTGIPKVQIAAGASSDEQPEVDVSDEDFMQFDT 197
Query: 161 ---VAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFF 217
++ + + IVD E+S + + + GHI V A
Sbjct: 198 SGIPVIVTLTKVGKHYIVDATPEEESQMSSAVSISINRQGHICGVTKRG-GAGLDPSVIL 256
Query: 218 AMLNLAKDRIADLIKLQKDVISN 240
M+++AK LI I++
Sbjct: 257 DMVSVAKHVSEQLINKLDSEIAS 279
>gi|156039812|ref|XP_001587013.1| hypothetical protein SS1G_12042 [Sclerotinia sclerotiorum 1980]
gi|154696099|gb|EDN95837.1| hypothetical protein SS1G_12042 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 261
Score = 89.5 bits (220), Expect = 3e-16, Method: Composition-based stats.
Identities = 38/244 (15%), Positives = 78/244 (31%), Gaps = 10/244 (4%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+RL GR+ N++R ++ ++GS + G+T +L T T G
Sbjct: 13 LRLDGRRWNELRRVTAQISTQPASDGSSYLSMGNTQVLCTVTGPCDPSKLRSIGGGGNSN 72
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLS----ALGSRQIIIDC 116
A R + V ++ GR+ + + + L + + I++
Sbjct: 73 AGEKAEVRVEISFAGFAGVDRKKYGRNDKRIQELSNTLSTTFTPHLLTTLTSNSTILLSL 132
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
++ DG +A I + +AL D M + + ++
Sbjct: 133 HILSLDGSLLSALINASTLALIDAGIPMPSYIC---ACTAGSTSSYSSNDEKADPLLDLN 189
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
L ++ A D +V + ML + D + ++
Sbjct: 190 LSEEQELPFLTVATAGEGDGDGVVALVM---ETRVQAGRLEGMLAVGVDGCKQVREILDG 246
Query: 237 VISN 240
VI +
Sbjct: 247 VIRS 250
>gi|330795359|ref|XP_003285741.1| hypothetical protein DICPUDRAFT_29826 [Dictyostelium purpureum]
gi|325084289|gb|EGC37720.1| hypothetical protein DICPUDRAFT_29826 [Dictyostelium purpureum]
Length = 290
Score = 89.1 bits (219), Expect = 4e-16, Method: Composition-based stats.
Identities = 33/274 (12%), Positives = 70/274 (25%), Gaps = 40/274 (14%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIR-------N 53
+R GR R SL +A GS VK DT +L E
Sbjct: 20 IRSDGRNRVDYRNFSLETGEIIHANGSARVKLSDTEVLVGVKAEITHIQPKELTNTLQTF 79
Query: 54 TKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQII 113
+ P ++ + + + E+ + + R + + + S
Sbjct: 80 DTSKRLVFSVNCCPSASPEFEGKGSEF-----LNIELGKQLERLYKFIFNKSNYHGNDNC 134
Query: 114 IDCDVIQADGGTRTAAI-------------TGAWVALHDCLQHMEDCSNKF--------- 151
+ + AI AL++
Sbjct: 135 LSIVSGKYYWTLYIDAIVLDSDGNLFDALSIATRAALYNTRLPRVKAIQGEYEEITFEVS 194
Query: 152 -----QLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSA 206
LS ++ ++ + ++D E+ +D + +I +Q
Sbjct: 195 DDPEDTLSLSIENAPICVTLTKIGTQFVIDSTLQEELCMDARLTVGINSHSNICSIQKGG 254
Query: 207 ERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
M+N +K ++ + +
Sbjct: 255 -IQGLDPATINQMINTSKVIGTKILNIMDKTLKE 287
>gi|238881631|gb|EEQ45269.1| exosome complex exonuclease RRP41 [Candida albicans WO-1]
Length = 240
Score = 89.1 bits (219), Expect = 4e-16, Method: Composition-based stats.
Identities = 37/243 (15%), Positives = 79/243 (32%), Gaps = 22/243 (9%)
Query: 1 MRLSGRQENQMREISLTRRVSKYA-EGSCLVKFGDTHLLTTATLEEKVP-MWIRNTKHGW 58
+R+ GR+ N++R + +GS V+ G+T ++ T + ++++
Sbjct: 9 LRIDGRRWNELRRFECRINTHPNSSDGSSYVEQGNTKVMCTVQGPIEPALRSQQHSERAN 68
Query: 59 ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDV 118
I + ST R KR R + + V ++ I+I+ V
Sbjct: 69 IEVNLNIASFSTFERKKRSRNERRLVELK----TTLEKTFEESVMINLYPRTNIVINVQV 124
Query: 119 IQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLD 178
+ DGG A I +AL D M D + + V+
Sbjct: 125 LCQDGGMLAAVINSITLALIDAGISMYDYVSG-----------VSCGVYDQTPLLDVNNL 173
Query: 179 YGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
D + ++ ++ ++ D ++L++ + +L +
Sbjct: 174 EEHDMSCLTVGVIGKSEKLALMLLE-----DKMPLDRLESVLSIGIAGSHKIRELMDQEV 228
Query: 239 SNE 241
Sbjct: 229 RKH 231
>gi|157107418|ref|XP_001649768.1| exosome complex exonuclease rrp43 (ribosomal RNA processing protein
43 [Aedes aegypti]
gi|108884054|gb|EAT48279.1| exosome complex exonuclease rrp43 (ribosomal RNA processing protein
43 [Aedes aegypti]
Length = 274
Score = 89.1 bits (219), Expect = 4e-16, Method: Composition-based stats.
Identities = 38/254 (14%), Positives = 77/254 (30%), Gaps = 16/254 (6%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+R GR+ +R +++ K A+GS +VK G+T ++ E P + G++
Sbjct: 23 IRPDGREIGDLRPLAINFDSIKTADGSAIVKIGNTTVVCGIKAELAPPKPVEP-DTGYLV 81
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRA---LRSVVDLSALGSRQIIIDCD 117
+ P S+ Q ++ L+ + + D
Sbjct: 82 PNIEISPLSSPKYRPGPPSEEAQVYSCSLADAILNSGCVNLKDLCITKEQLVWALYCDLV 141
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKG----------HVAAISCG 167
+ DG A++ ALH + +V + S
Sbjct: 142 CLDHDGCIFDASVIALVAALHTLRLPPVKHNPDTDEREVDEDAERIPLKLNSIPVTTSFA 201
Query: 168 MLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRI 227
+ G I D E++ + + + S Q+ + A R
Sbjct: 202 VFGGRIIADPTAEEEALATSTITITIC-DSTLSYINKSG-GDPLEQELLDKCIENAMKRE 259
Query: 228 ADLIKLQKDVISNE 241
+ L + + N+
Sbjct: 260 KSVRGLIRKMTKNK 273
>gi|217073628|gb|ACJ85174.1| unknown [Medicago truncatula]
Length = 286
Score = 89.1 bits (219), Expect = 5e-16, Method: Composition-based stats.
Identities = 44/262 (16%), Positives = 75/262 (28%), Gaps = 26/262 (9%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+R GR+ R I + V A GS V+ G T ++ + E P ++ K
Sbjct: 20 LRCDGRKRLTYRPILVETGVIPQANGSARVRIGATEVIASVKAELGKPSLMQPDKGKVSI 79
Query: 61 AEYGMLPRSTGNRVKREAV---------SGRQGGRSQEIQRMIGRALRSVVDLSALGSRQ 111
+ G I R+ VV+
Sbjct: 80 YIDCSSTAEPAFEGRGADWLSADLSNALQRCLLGAKSGAGAAIDRSSLVVVEGKIC--WD 137
Query: 112 IIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGH----------- 160
+ ID V+ +DG VAL + + + +
Sbjct: 138 LYIDGLVVSSDGNLLDTLGAAIKVALSNTGIPKVQIAAGASSDEQPEVDVSDEDFMQFDT 197
Query: 161 ---VAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFF 217
++ + + IVD E+S + + + GHI V A
Sbjct: 198 SGIPVIVTLTKVGKHYIVDATPEEESQMSFTVSISINRQGHICGVTKRG-GAGLDPSVIL 256
Query: 218 AMLNLAKDRIADLIKLQKDVIS 239
M+++AK LI I+
Sbjct: 257 DMVSVAKHVSEQLINKLDSEIA 278
>gi|302795634|ref|XP_002979580.1| hypothetical protein SELMODRAFT_233365 [Selaginella moellendorffii]
gi|300152828|gb|EFJ19469.1| hypothetical protein SELMODRAFT_233365 [Selaginella moellendorffii]
Length = 291
Score = 89.1 bits (219), Expect = 5e-16, Method: Composition-based stats.
Identities = 49/261 (18%), Positives = 79/261 (30%), Gaps = 24/261 (9%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+R GR + R S++ A+GS LVK G+T +L A LE P G ++
Sbjct: 27 VRPDGRPLTRSRPTSVSFNAVSSADGSALVKIGNTTMLAGAKLETMEPAA-DTPDQGCLS 85
Query: 61 AEYGMLPRSTGNRVKREAVSGR------------------QGGRSQEIQRMIGRALRSVV 102
++ M P + S + V
Sbjct: 86 VDFVMPPICSPRVRPGRPAEEAYVITEQLQNALLSSGVVDLRELSIVSGKAAWMIYLDVY 145
Query: 103 DLSALGSRQIIIDCDVIQADGGTRTAAITGA-----WVALHDCLQHMEDCSNKFQLSQVL 157
L A GS + A + AI A D + L
Sbjct: 146 CLDADGSLLDAALLASVAALAHLQVPAICVRSEGKITKAPPDAQASSDGIEFTQPRRLNL 205
Query: 158 KGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFF 217
A++ M I D E++ +D ++ S I+ + + T S
Sbjct: 206 GEFPFALTVAMNQKSLIADPTAEEEAILDTKMIVILNSSQKIIALHKAGGSTTASTATIQ 265
Query: 218 AMLNLAKDRIADLIKLQKDVI 238
L LA R L K+ ++ +
Sbjct: 266 DCLALAMRRRKTLQKVLEEAL 286
>gi|213513832|ref|NP_001134673.1| Exosome complex exonuclease MTR3 [Salmo salar]
gi|209735138|gb|ACI68438.1| Exosome complex exonuclease MTR3 [Salmo salar]
Length = 277
Score = 89.1 bits (219), Expect = 5e-16, Method: Composition-based stats.
Identities = 44/244 (18%), Positives = 82/244 (33%), Gaps = 14/244 (5%)
Query: 2 RLSGRQEN--QMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIR-NTKHGW 58
R+ GRQ +R + + + A+GS ++ G+T L+ + + K G
Sbjct: 36 RVDGRQRGQVDVRSVFVRCGLISQAKGSAYIEAGNTKLICCVYGPRETERKDETDMKSGR 95
Query: 59 ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDV 118
+ + P S R S +++ M+ +LR V L QI ++ V
Sbjct: 96 LITDMRFAPFSCRERGSWIQGS-----DEKDLSLMLLESLRPGVCLQKYPRSQIEVNVMV 150
Query: 119 IQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLD 178
++ DG A+T A +AL D M D + Q ++ + G +
Sbjct: 151 LENDGAVLAHAVTCASMALADAGIEMYDLVLGCSIRQEGATYLIDPTFLEENGCNLASGS 210
Query: 179 YGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
+ I +Q E +D + + L + + +
Sbjct: 211 RENL---GSLTVAFLPSLNQISGLQSDGEMG---EDTLTGGVRTCIEGCFKLYPVIQQAL 264
Query: 239 SNEV 242
S V
Sbjct: 265 SKAV 268
>gi|315427142|dbj|BAJ48757.1| exosome complex component RRP42 [Candidatus Caldiarchaeum
subterraneum]
gi|315427161|dbj|BAJ48775.1| exosome complex component RRP42 [Candidatus Caldiarchaeum
subterraneum]
Length = 271
Score = 89.1 bits (219), Expect = 5e-16, Method: Composition-based stats.
Identities = 43/240 (17%), Positives = 86/240 (35%), Gaps = 22/240 (9%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R+ R+ Q R+I + V + A GS LV G T +LT +E P + G T
Sbjct: 24 RIDEREPLQYRKIEIATNVVEKAHGSALVSLGKTKILTGIKVEVGTP-YPDRPNEGVFTV 82
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALR---------------SVVDLSA 106
+LP ++ G R+ E+ R++ R +R V +
Sbjct: 83 NAELLPLASKTFEP-----GPPDERAIELSRIVDRVIRESKAIEVEKLCIVEGQKVYMIF 137
Query: 107 LGSRQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISC 166
+ + D + A + AA+ + ++ + + ++ ++ +++
Sbjct: 138 IDCYVLDYDGNYFDASVLSAVAALRTMTLPVYRVVDGRVEAVPGEKMKLPMRTLPVSVTM 197
Query: 167 GMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226
++ IVD E+ D G + +Q S+ + F M+ + D
Sbjct: 198 ALIRDKIIVDPLPAEEDVADTVVTIGYDSDGVLSAIQKSS-PGLLPVNMFKEMVKIGLDA 256
>gi|298705981|emb|CBJ29102.1| similar to exosome component 6 [Ectocarpus siliculosus]
Length = 274
Score = 88.7 bits (218), Expect = 6e-16, Method: Composition-based stats.
Identities = 45/256 (17%), Positives = 81/256 (31%), Gaps = 24/256 (9%)
Query: 1 MRLSGRQENQMREISLTRRVSK--YAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW 58
+R GR+ +R IS+ V + S LV G T +L +L+ P G
Sbjct: 23 VRPDGRELRAVRPISVDVGVLSEERVQASALVGLGSTKVLAGISLQVGHP-SENTPMCGM 81
Query: 59 ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRA--------LRSVVDLSALGSR 110
+ E + P S+ SGR ++ + + + L + +
Sbjct: 82 LDVEVKLTPLSSSKF-----SSGRPSEQAHVLSTFVKNSIVESGALVLTDLAIDDGAFAW 136
Query: 111 QIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQ-------LSQVLKGHVAA 163
++ +D + DG A + A AL + V++
Sbjct: 137 KLCMDIVCLSFDGNLADATLIAAMGALMRLQLPGTRRIDDEIFVTEDTPTQLVVREVPVP 196
Query: 164 ISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLA 223
++CG+ G I D E+ + V T G + V + S L L
Sbjct: 197 LTCGVFDGIIIADPSLLEEELLTTHVTVVSTSEGKVCGVHKPG-GSCASGKQLNECLQLC 255
Query: 224 KDRIADLIKLQKDVIS 239
+ L + +
Sbjct: 256 QQHAKQLTQTLAAAVR 271
>gi|307187131|gb|EFN72375.1| Exosome complex exonuclease RRP43 [Camponotus floridanus]
Length = 284
Score = 88.7 bits (218), Expect = 6e-16, Method: Composition-based stats.
Identities = 45/257 (17%), Positives = 75/257 (29%), Gaps = 25/257 (9%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+R GR+ R +S+ A+ S + K GDT + E P HG+I
Sbjct: 22 IRPDGRKFLSFRPVSVNVSSIVQADSSAIFKLGDTSAVCGIKAELATPKA-DIPDHGYIV 80
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIG------RALRSVVDLSALGS--RQI 112
+ P + G ++Q + ++I RAL +
Sbjct: 81 PNVELSPLCSPKFRP-----GPPSEQAQVLSKLIDIVLSNSRALDLKDLCICKNKLVWVL 135
Query: 113 IIDCDVIQADGGTRTAAITGAWVALHDCLQH--MEDCSNKFQLSQVLKG--------HVA 162
D + +G A I AL + ++ V+
Sbjct: 136 YCDILCLNYNGSVIDACIGAMIAALKTLTLPEINYNSETGVIVTHPENRKAFTVRTLPVS 195
Query: 163 AISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNL 222
A +VD E+ + VM D I + SQ+ L +
Sbjct: 196 ASFAIFEKQLLLVDPSDDEEDMSSTRFSIVMDDEEEICYIHKPG-GIPISQNLLCKGLEM 254
Query: 223 AKDRIADLIKLQKDVIS 239
K R + + IS
Sbjct: 255 TKVRAKSIRSVINAAIS 271
>gi|311252595|ref|XP_003125174.1| PREDICTED: polyribonucleotide nucleotidyltransferase 1,
mitochondrial-like [Sus scrofa]
Length = 487
Score = 88.7 bits (218), Expect = 7e-16, Method: Composition-based stats.
Identities = 39/250 (15%), Positives = 78/250 (31%), Gaps = 30/250 (12%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTA---TLEEKVPMWIRNTKHGWITAEYGMLP 67
R++ ++ ++++A+GS +V+ GDT ++ TA T + A G +P
Sbjct: 54 RKLEISSGKLARFADGSAVVQSGDTAVMVTAVSKTKPSPSQFMPLVVDYRQKAAAAGRIP 113
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
+ R + R+I R++R + QI+ + +
Sbjct: 114 TNYLRREIGS------SDKEILTSRVIDRSIRPLFPAGYFYDTQILCNLLAVDGVNEPDV 167
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML------------------ 169
AI GA VAL ++ + V + +
Sbjct: 168 LAINGASVALSLSDIPWNGPIGAVRIGMIDGECVVNPTRKEMSSSTLNLVVTGAPKSQID 227
Query: 170 -CGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIA 228
+ ED D+D T G I +Q + + A
Sbjct: 228 VQPAVCAFVKGIEDYHGDMDFKIAGTAKG-ITALQADIKLPGIPIKIVMEAIQQASVAKK 286
Query: 229 DLIKLQKDVI 238
+++++ I
Sbjct: 287 EILQIMNKTI 296
>gi|260834769|ref|XP_002612382.1| hypothetical protein BRAFLDRAFT_280121 [Branchiostoma floridae]
gi|229297759|gb|EEN68391.1| hypothetical protein BRAFLDRAFT_280121 [Branchiostoma floridae]
Length = 291
Score = 88.4 bits (217), Expect = 7e-16, Method: Composition-based stats.
Identities = 34/258 (13%), Positives = 70/258 (27%), Gaps = 19/258 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+R GR R + + V GS ++ G+T +L E P R K G +
Sbjct: 24 LRSDGRACEDYRHVQVETDVVSNTSGSARLRLGNTDILVGVKAEMGEPDPGRP-KEGKLE 82
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGS---RQIIIDCD 117
++ R + + ++ + L + + +D
Sbjct: 83 FFVDCSANASPEFEGRGGEELAIEVSNALQRIFNSKSTLDLTALCIIPEGQCWVLFVDVL 142
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHME--------------DCSNKFQLSQVLKGHVAA 163
V++ G A AL + +
Sbjct: 143 VLECGGNLFDAVSLAVKAALFNTRIPTVVVTADDEGQQEIELSDDPYDVKRLDVDNVPLI 202
Query: 164 ISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLA 223
++ + +VD + E+ +T G I + + + + M+
Sbjct: 203 VTLSKIGHRHVVDASWEEELCSLARLTVGVTQKGTIAGLNKEG-SGSLDPESIYEMIESG 261
Query: 224 KDRIADLIKLQKDVISNE 241
K L K+ + E
Sbjct: 262 KKVGMVLNSRLKEALEKE 279
>gi|66475762|ref|XP_627697.1| archeo-eukaryotice exosomal RNAse PH [Cryptosporidium parvum Iowa
II]
gi|32398930|emb|CAD98395.1| ribonuclease PH-like protein, possible [Cryptosporidium parvum]
gi|46229123|gb|EAK89972.1| archeo-eukaryotice exosomal RNAse PH [Cryptosporidium parvum Iowa
II]
gi|323509005|dbj|BAJ77395.1| cgd6_3540 [Cryptosporidium parvum]
Length = 303
Score = 88.4 bits (217), Expect = 9e-16, Method: Composition-based stats.
Identities = 41/252 (16%), Positives = 81/252 (32%), Gaps = 13/252 (5%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWI--RNTKHGW 58
+R RQ ++R I++ V + A+GS G+T +L
Sbjct: 46 IRNDDRQFEELRPITIRTGVIENADGSAYFSIGNTKVLCGIYGPNLCKQNPIEDGLSVSV 105
Query: 59 ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDV 118
S + K + + ++ + + SV+ I +
Sbjct: 106 EYTIGSFCRDSALAKSKVNTENIEIKSDEKIKSILLEKVISSVICHEKYKRSSIDCYFYI 165
Query: 119 IQADGGTRTAAITGAWVALHDCLQHME---DCSNKFQLSQVLKGHVAAISCGMLCGYPIV 175
I DG +AAI+ A ++L + + +N ++ + I+
Sbjct: 166 IDDDGSAFSAAISAACLSLCNAKIEIIGLFSATNIIAVNSNSLFNHDGKKQTEDEYSMIL 225
Query: 176 DLDYGEDST-----IDVDANFVMTDSGHIVEVQGSAERATF-SQDHFFAMLNLAKDRIAD 229
D Y E S + T +V + SA F +LA+ +
Sbjct: 226 DPTYNEISYLGASNYSTLEIGLCTIRNQVVYL--SANGDFFKDPKRIEEGFSLAEASCSA 283
Query: 230 LIKLQKDVISNE 241
++ KD +++E
Sbjct: 284 IVDEIKDHLTSE 295
>gi|119620491|gb|EAX00086.1| polyribonucleotide nucleotidyltransferase 1, isoform CRA_a [Homo
sapiens]
Length = 500
Score = 88.0 bits (216), Expect = 1e-15, Method: Composition-based stats.
Identities = 34/149 (22%), Positives = 57/149 (38%), Gaps = 14/149 (9%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE--------EKVPMWIRN 53
R GR +R +S + K GS L + G T +L T T + ++V I
Sbjct: 358 RCDGRDLTSLRNVSCEVDMFKTLHGSALFQRGQTQVLCTVTFDSLESGIKSDQVITAING 417
Query: 54 TKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQII 113
K Y P +T K ++ R+ G +AL V+ I
Sbjct: 418 IKDKNFMLHYEFPPYATNEIGKVTGLNRRELGHGAL----AEKALYPVIPRDFPF--TIR 471
Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQ 142
+ +V++++G + A+ G +AL D
Sbjct: 472 VTSEVLESNGSSSMASACGGSLALMDSGN 500
Score = 76.0 bits (185), Expect = 4e-12, Method: Composition-based stats.
Identities = 41/218 (18%), Positives = 78/218 (35%), Gaps = 25/218 (11%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTA---TLEEKVPMWIRNTKHGWITAEYGMLP 67
R++ ++ ++++A+GS +V+ GDT ++ TA T + A G +P
Sbjct: 54 RKLEISSGKLARFADGSAVVQSGDTAVMVTAVSKTKPSPSQFMPLVVDYRQKAAAAGRIP 113
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
+ R + R+I R++R + Q++ + +
Sbjct: 114 TNYLRREIGT------SDKEILTSRIIDRSIRPLFPAGYFYDTQVLCNLLAVDGVNEPDV 167
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
AI GA VA G V A+ G++ G +V+ E S+ +
Sbjct: 168 LAINGASVA-------------LSLSDIPWNGPVGAVRIGIIDGEYVVNPTRKEMSSSTL 214
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKD 225
+ IV ++ SAE Q F + +
Sbjct: 215 NLVVAGAPKSQIVMLEASAEN--ILQQDFCHAIKVGVK 250
>gi|302760867|ref|XP_002963856.1| hypothetical protein SELMODRAFT_80529 [Selaginella moellendorffii]
gi|300169124|gb|EFJ35727.1| hypothetical protein SELMODRAFT_80529 [Selaginella moellendorffii]
Length = 250
Score = 88.0 bits (216), Expect = 1e-15, Method: Composition-based stats.
Identities = 47/240 (19%), Positives = 84/240 (35%), Gaps = 21/240 (8%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R+ GR R L + A GS + GDT ++ + + + G +
Sbjct: 27 RIDGRHAQMCRAAFLRTGAVRAAAGSAYAESGDTKVIVSVFGPRESKKAEAFSDAGRLNC 86
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
+T R K A + + M+ +++ VDL + + V+Q+
Sbjct: 87 NVKYCSFATPVRGKMGAANAEERDL----SSMLYKSVVGAVDLRTFPKTTVDVFALVLQS 142
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
GG +T A +AL D + D VAA+S + G ++D E
Sbjct: 143 GGGDLPVIVTCASLALADAGIVLYDL-------------VAAVSVSSIQGQVLLDPSTSE 189
Query: 182 DSTIDVDANF-VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
++ D M I +V + E +S L+L D A + + + +
Sbjct: 190 ENCEDGSLMVAYMPSRKEITQVTMTGE---WSSSRASESLDLCLDACAKIGDVMRSCLKE 246
>gi|320169517|gb|EFW46416.1| exosome component 7 [Capsaspora owczarzaki ATCC 30864]
Length = 294
Score = 88.0 bits (216), Expect = 1e-15, Method: Composition-based stats.
Identities = 35/253 (13%), Positives = 67/253 (26%), Gaps = 13/253 (5%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRN-TKHGWI 59
+R GR R ++ + GS V+ G T +L E P + +
Sbjct: 21 LRSDGRLRTDYRPFTVESGIVSNTSGSARVRLGLTDVLVGVKAEIGEPDQAKPTQGRFEV 80
Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119
T ++ S + ++ ++ + AL V +
Sbjct: 81 TVDFSSTSASAAAFDDDNTETELASAIARTLKGVDLSALCIVPGEQCWVIYIDALILVAA 140
Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGH-----------VAAISCGM 168
+ A+ A + D + +V ++
Sbjct: 141 GNAYDVLSLAVRAALANTRIPKVEVSDDGHGRVELEVSDDPHHVTELDIRAVPVIVTLSK 200
Query: 169 LCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIA 228
+ + IVD E+S + + G V A F L AK
Sbjct: 201 IGAFHIVDATIEEESCAKSRVHVAVDSKGAFCMVTK-ASAGGIEPQLLFDALESAKQVGQ 259
Query: 229 DLIKLQKDVISNE 241
L+ + + E
Sbjct: 260 HLLSQLEATLKQE 272
>gi|242082071|ref|XP_002445804.1| hypothetical protein SORBIDRAFT_07g026060 [Sorghum bicolor]
gi|241942154|gb|EES15299.1| hypothetical protein SORBIDRAFT_07g026060 [Sorghum bicolor]
Length = 306
Score = 88.0 bits (216), Expect = 1e-15, Method: Composition-based stats.
Identities = 48/262 (18%), Positives = 89/262 (33%), Gaps = 25/262 (9%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+R+ R+ + R ++ A GS LV+ GDT +L + LE P G +
Sbjct: 39 VRIDARRLREARPTTIALGAVSSAHGSALVRLGDTAMLASVKLEVMSPPAEHP-DEGSVA 97
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGS---RQIIIDCD 117
E+ M P + + ++ + ++ DL + +D
Sbjct: 98 VEFHMPPICSPLVRPGRSAEVAPVISKALEDVLMSSGMLNLKDLCLITGKASWLAYLDIY 157
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCS--------------------NKFQLSQVL 157
+ ADG AA+ A A + N+ + L
Sbjct: 158 CLNADGSLFDAALISAVAAFTHLEIPLVSVGDDGRLFTVGGNDGKNKFELVNREKRKLTL 217
Query: 158 KGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFF 217
+++C + + D E+S I+ V+ S +V +Q T S
Sbjct: 218 CDIPLSLTCALHKDSILADPTSEEESIIETYVTVVVDSSDRLVSLQKVGGAVT-SMATIK 276
Query: 218 AMLNLAKDRIADLIKLQKDVIS 239
++LAK+R L ++ D +
Sbjct: 277 ECISLAKERRQSLREILIDSVK 298
>gi|91081401|ref|XP_972667.1| PREDICTED: similar to exosome component 8 [Tribolium castaneum]
gi|270006123|gb|EFA02571.1| hypothetical protein TcasGA2_TC008282 [Tribolium castaneum]
Length = 271
Score = 88.0 bits (216), Expect = 1e-15, Method: Composition-based stats.
Identities = 31/253 (12%), Positives = 76/253 (30%), Gaps = 17/253 (6%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+R GR+ + R I + A+GS + K G T ++ E P G++
Sbjct: 22 IRPDGREFGEYRPIVVNLGSISTADGSAIAKVGRTTVVCGIKAELCQPKA-EAANEGFLI 80
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
+ P + Q +Q + ++ + + + ++
Sbjct: 81 PNVELPPLCSSKFRPGPPTEQAQV-ATQLVADILKNSDCLDLKTLCIFPDKLAWCLYADL 139
Query: 121 ADGGTRTAAITGAWVALHDCLQH-------------MEDCSNKFQLSQVLKGHVAAISCG 167
A I VAL L+ + + + + + + A +
Sbjct: 140 ICLDLDGALIDACVVALMAALKSVTLPAVQYDPALDNKQVNVQERKALSVTNTPIATTFA 199
Query: 168 MLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRI 227
M ++D E+ V+ + + V F+++ + + R
Sbjct: 200 MFDDKILIDPTVDEEDLSTSLVTIVVKEE-ELCFVHKPG-GCVFTEEQLLKCVEESTKRA 257
Query: 228 ADLIKLQKDVISN 240
+ ++ + +
Sbjct: 258 TVIEEIIETAFKS 270
>gi|302780062|ref|XP_002971806.1| hypothetical protein SELMODRAFT_441621 [Selaginella moellendorffii]
gi|300160938|gb|EFJ27555.1| hypothetical protein SELMODRAFT_441621 [Selaginella moellendorffii]
Length = 250
Score = 88.0 bits (216), Expect = 1e-15, Method: Composition-based stats.
Identities = 47/240 (19%), Positives = 83/240 (34%), Gaps = 21/240 (8%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R+ GR R L + A GS + GDT ++ + + + G +
Sbjct: 27 RIDGRHAQMCRAAFLRTGAVRAAAGSAYAESGDTKVIVSVFGPRESKKAEAFSDAGRLNC 86
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
+T R K A + + M+ +++ VDL + + V+Q+
Sbjct: 87 NVKYCSFATPVRGKMGAANAEERDL----SSMLYKSVVGAVDLRTFPKTTVDVFALVLQS 142
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
GG +T A +AL D + D VAA+S + G ++D E
Sbjct: 143 GGGDLPVIVTCASLALADAGIVLYDL-------------VAAVSASSIQGQVLLDPSTSE 189
Query: 182 DSTIDVDANF-VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
++ D M I +V + E +S L L D A + + + +
Sbjct: 190 ENCEDGSLMVAYMPSRKEITQVTMTGE---WSSSRASESLELCLDACAKIGDVMRSCLKE 246
>gi|301097298|ref|XP_002897744.1| exosome complex exonuclease RRP41-like protein [Phytophthora
infestans T30-4]
gi|262106765|gb|EEY64817.1| exosome complex exonuclease RRP41-like protein [Phytophthora
infestans T30-4]
Length = 777
Score = 87.6 bits (215), Expect = 1e-15, Method: Composition-based stats.
Identities = 40/258 (15%), Positives = 85/258 (32%), Gaps = 41/258 (15%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRN------- 53
+R+ GR+ ++R I + +GS + G+T ++ ++
Sbjct: 25 LRVDGRRSEEVRRIRTRFGLFSRVDGSSYYEQGNTKVVAVVYGPRELRTAAAGSVNSGAA 84
Query: 54 -------------TKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRS 100
+ E+ +T R + + + E+ + + +
Sbjct: 85 AVGTGSGNAASNTQPRATVNCEFTQAAFATSERKPQRSGDRK----KLEMSLAVKQIFEA 140
Query: 101 VVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGH 160
+ QI I V+ ADGG A+I +AL D + D
Sbjct: 141 CIQTQLYPRSQIDIFVQVLHADGGELPASINAITLALIDAGIALNDF------------- 187
Query: 161 VAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMT-DSGHIVEVQGSAERATFSQDHFFAM 219
V A S G L + DL+Y E+ + + + +Q + + F ++
Sbjct: 188 VVASSAGYLQQTMLCDLNYAEEVARAPQMIIALNPRTQKLNLLQMECK---LQLELFESL 244
Query: 220 LNLAKDRIADLIKLQKDV 237
+ +A + + L ++
Sbjct: 245 MEVATEGCNQIYDLLQNA 262
>gi|301097627|ref|XP_002897908.1| exosome complex exonuclease RRP42-like protein [Phytophthora
infestans T30-4]
gi|262106656|gb|EEY64708.1| exosome complex exonuclease RRP42-like protein [Phytophthora
infestans T30-4]
Length = 295
Score = 87.6 bits (215), Expect = 1e-15, Method: Composition-based stats.
Identities = 42/260 (16%), Positives = 79/260 (30%), Gaps = 21/260 (8%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFG--DTHLLTTATLEEKVPMWIRNTKHGW 58
+R GR R +SL + + GS T +L + LE P+ + G
Sbjct: 20 VRADGRDRLSYRSLSLETSLLAQSNGSARASLEASGTDVLASVKLEVASPL-PEDPNAGI 78
Query: 59 ITAEYGMLPRSTGN---RVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115
+ + P + R E ++ + L + I ID
Sbjct: 79 VQVDVSCCPSVSAKLYGRAVEELNVELSQLMTRLLCSCPSAELEKYCIIPGESVWSISID 138
Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQH--------------MEDCSNKFQLSQVLKGHV 161
V ++ G + AL+D + D + +
Sbjct: 139 VMVFESSGNLPDVISMAIYAALNDTIFPSVRLVGVEGEDKTIEVDTDPAAGKLMMAQQWP 198
Query: 162 AAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLN 221
++ + Y I D E+ + + G++ VQ S + + M++
Sbjct: 199 ICVTLSKIGDYFITDPLQEEELCTTAQMSVAVNPDGNVCGVQKSGN-GSIEMEEMQQMID 257
Query: 222 LAKDRIADLIKLQKDVISNE 241
A R DL KL + + +
Sbjct: 258 EACARSKDLFKLLQKALLEQ 277
>gi|195629840|gb|ACG36561.1| exosome complex exonuclease RRP46 [Zea mays]
Length = 240
Score = 87.6 bits (215), Expect = 1e-15, Method: Composition-based stats.
Identities = 43/247 (17%), Positives = 78/247 (31%), Gaps = 23/247 (9%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R GR NQ+R + T A GS GDT +L + P + +
Sbjct: 7 RADGRNPNQLRPFTCTGNPLHRAHGSARWAQGDTVVLAAVYGPK--PGTRKGENPEKASI 64
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
E P +G+ G + +E + + R L+S+ L+ + + V+
Sbjct: 65 EVVWKP-----------KTGQIGRQEREYEMTLKRTLQSICLLTVHPNTTTSVVLQVVGD 113
Query: 122 DGGTRTAAITGAWVALHDCLQHM----EDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
DG + AI + AL M S + V+ + + +
Sbjct: 114 DGSLMSCAINASCAALAFAGIPMKHLAVAISCGVMDNGVVILDTSRAEEQQARSFAHLVF 173
Query: 178 DYGEDSTIDVDANFVM--TDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
S D ++ G I + S+D +F + + + +
Sbjct: 174 PNSRKSVESKDPTQRDEESERGLITCI----THGAMSEDDYFNCIERGVMASSRISDFMR 229
Query: 236 DVISNEV 242
+ EV
Sbjct: 230 KTLQKEV 236
>gi|281206474|gb|EFA80660.1| hypothetical protein PPL_06243 [Polysphondylium pallidum PN500]
Length = 278
Score = 87.2 bits (214), Expect = 2e-15, Method: Composition-based stats.
Identities = 37/255 (14%), Positives = 82/255 (32%), Gaps = 16/255 (6%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT---LEEKVPMWIRNTKHG 57
+R GR ++R +++ A+GS VK G+T ++ E++ NT
Sbjct: 21 VRPDGRSLQRIRNTTVSAGSILTADGSSFVKIGNTSVICGVRAEIAEKQQDQTTSNTCKS 80
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGS---RQIII 114
I M P + + +Q Q + + + + +
Sbjct: 81 QIIVNIEMGPICSNIFSSTKPSEKAMSLCTQLNQLVQLLDIDPKQLYFDVDGKYLWYLYV 140
Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHM---------EDCSNKFQLSQVLKGHVAAIS 165
D + +G AAI AL + + ++ ++ +S
Sbjct: 141 DLYCLDYNGNILDAAIIAMLSALKNVKLPKGVVSDDGSEVYKEEDTMRTLIINSYLIPLS 200
Query: 166 CGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKD 225
++ Y + D E+ + + V + + +Q + + L+ K
Sbjct: 201 FAVIDEYVLSDPSLEEEKLSNGSISIVYNEKRELC-LQLYSGITPLDEKTLQQCLDQTKQ 259
Query: 226 RIADLIKLQKDVISN 240
R ++ L I++
Sbjct: 260 RTQEIKDLIDQSIND 274
>gi|326922105|ref|XP_003207292.1| PREDICTED: exosome complex exonuclease RRP42-like [Meleagris
gallopavo]
Length = 291
Score = 87.2 bits (214), Expect = 2e-15, Method: Composition-based stats.
Identities = 36/258 (13%), Positives = 70/258 (27%), Gaps = 19/258 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+R+ GR R + V GS VK G T +L E P + G++
Sbjct: 22 LRVDGRGCEDYRCAEVETDVVSNTSGSARVKLGHTDILVGVKAEMGTPK-LEKPDEGYLE 80
Query: 61 AEYGMLPRSTGN---RVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
+T R E + + L+S+ + +D
Sbjct: 81 FFVDCSANATPEFEGRGGEELGTEIASTLYRIFSSEGSIDLKSLCINPREHCWVLYVDVL 140
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMED-------CSNKFQLSQVLKGH-------VAA 163
+++ G A AL +
Sbjct: 141 LLECGGNLFDAISIAVKAALFNTRIPKVRVLEDEEGSKEIELSDDPYDCIRLNVDDVPCI 200
Query: 164 ISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLA 223
++ + +VD E++ +T G + ++ + + + F M+
Sbjct: 201 VTLNKIGYRHVVDATLQEEACCLASLLIAITSKGALTCMKKIGK-GSLDPESIFEMMETG 259
Query: 224 KDRIADLIKLQKDVISNE 241
K L + V+ E
Sbjct: 260 KKVGKSLHASLQKVLDEE 277
>gi|218194134|gb|EEC76561.1| hypothetical protein OsI_14380 [Oryza sativa Indica Group]
Length = 238
Score = 87.2 bits (214), Expect = 2e-15, Method: Composition-based stats.
Identities = 41/246 (16%), Positives = 80/246 (32%), Gaps = 23/246 (9%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R GR NQ+R S TR A GS GDT +L + P + +
Sbjct: 5 RADGRNPNQLRPFSCTRNPLDRAHGSARWAQGDTIVLAAVYGPK--PGTRKGENPEKASI 62
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
E P + G+ G + +E + + R L+S+ L+ + + V+
Sbjct: 63 EVVWKPMT-----------GQIGKQEKEYEMTLKRTLQSICLLTVHPNTTTSVILQVVGN 111
Query: 122 DGGTRTAAITGAWVALHDCLQHMED------CSNKFQLSQVLKGHVAAISCGMLCGYPIV 175
DG AI AL ++ C +L + A + +
Sbjct: 112 DGSLLPCAINACCAALVFAGIPLKHLAVAIGCGVLEDGEVILDTNKAEEQQLKSFAHLVF 171
Query: 176 DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
S+ + + ++ G I + S++ +F+ + + + +
Sbjct: 172 PNSRKSASSKEPNQKEEDSERGLITSI----THGVMSEEDYFSCIERGLAASSRISHFMR 227
Query: 236 DVISNE 241
+ +
Sbjct: 228 TTLQKQ 233
>gi|297829330|ref|XP_002882547.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297328387|gb|EFH58806.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 287
Score = 87.2 bits (214), Expect = 2e-15, Method: Composition-based stats.
Identities = 40/261 (15%), Positives = 78/261 (29%), Gaps = 24/261 (9%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+R GR+ R I + V A GS VK G T ++ + E P ++ G +
Sbjct: 20 LRTDGRKRLTYRPIYVETGVIPQANGSARVKIGGTDVIASVKAEIGRPSSLQP-DKGKVA 78
Query: 61 AEYGMLPRSTGNRVKREAV----SGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
P + R + + G + + ++ D
Sbjct: 79 VFIDCSPTAEPTFGGRGGEELSSELALALQRCLLGGKSGAGAGINLSSLLIKEGKVCWDL 138
Query: 117 DVIQADGGTRTAAITGAWVALHDCL------------------QHMEDCSNKFQLSQVLK 158
+ + + A+ L Q D S++ L
Sbjct: 139 YIDGLVISSDGNLLDALGAAIKAALTNTAIPKVNVSAEVADDEQPEIDISDEEYLQFDTS 198
Query: 159 GHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFA 218
++ + + IVD E+S + + + +GHI + +
Sbjct: 199 SVPVIVTLTKVGTHYIVDATAEEESQMSSAVSISVNRAGHICGLTKRG-GSGLDPSVILD 257
Query: 219 MLNLAKDRIADLIKLQKDVIS 239
M+++AK +L+ IS
Sbjct: 258 MISVAKHVTENLMSKLDSEIS 278
>gi|3970797|emb|CAA74099.1| polynucleotide phosphorylase [Staphylococcus aureus]
Length = 277
Score = 87.2 bits (214), Expect = 2e-15, Method: Composition-based stats.
Identities = 34/207 (16%), Positives = 69/207 (33%), Gaps = 18/207 (8%)
Query: 37 LLTTAT----LEEKVPMWIRNTKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQR 92
L+ T E ++ + Y S G+ + + R+ G
Sbjct: 1 ALSVCTLAPLGEHQIIDGLGVQDSKRFIHHYNFPQFSVGSTGRAGSPGRREIGHGALG-- 58
Query: 93 MIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQ 152
RAL ++ I + +V++++G + A+I +AL D ++
Sbjct: 59 --ERALAQIIPSEEDFPYTIRLVAEVLESNGSSSQASICAGTLALMDAGVPIKAPVAGIA 116
Query: 153 LSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFS 212
+ V G + D+ ED D+D T G I +Q + +
Sbjct: 117 MGLVSDGE---------NYTILTDIQGLEDHLGDMDFKVAGTKDG-ITALQMDIKIQGIT 166
Query: 213 QDHFFAMLNLAKDRIADLIKLQKDVIS 239
+ L+ AK ++++ I+
Sbjct: 167 EQILTEALDQAKKARMEILEELTTTIA 193
>gi|328875321|gb|EGG23686.1| hypothetical protein DFA_05820 [Dictyostelium fasciculatum]
Length = 307
Score = 87.2 bits (214), Expect = 2e-15, Method: Composition-based stats.
Identities = 40/246 (16%), Positives = 83/246 (33%), Gaps = 17/246 (6%)
Query: 5 GRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYG 64
R E Q R+I + V A GS ++ +T ++ + P +
Sbjct: 54 NRSEEQFRQIFMKTGVVSQASGSAYIEIENTKVICSVHGPRASPKTELFESAKFSCELKF 113
Query: 65 MLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGG 124
G R+ + + +++ + +++ + L I + V+ DGG
Sbjct: 114 ASFARPGERIDYM-----ESAKEKDLSINLRQSIIGAIRLEKYPKTVIDVYVMVLNDDGG 168
Query: 125 TRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCG------------MLCGY 172
AAIT A +AL D M D + + ++ S G +
Sbjct: 169 VLVAAITAASMALADAGVEMYDMVSACSSICIRNQSISNGSNGSGSGNGSSGAAPKVQSS 228
Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
++D E+ + D V+ + E+ + S ++ ++L D +
Sbjct: 229 ILLDPTLQEEESKDSLGCVVVAKMPSLNEITQIIQTGELSYNNTIDGIDLCIDGCDKIYS 288
Query: 233 LQKDVI 238
+ K +
Sbjct: 289 IMKQNL 294
>gi|298709840|emb|CBJ26180.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 244
Score = 86.8 bits (213), Expect = 2e-15, Method: Composition-based stats.
Identities = 56/243 (23%), Positives = 91/243 (37%), Gaps = 22/243 (9%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKV-PMWIRNTKHGWI 59
+R GR+ ++R + V K A+GS ++ G T ++ +V R G +
Sbjct: 13 LRPDGRRGREIRRVRSRFGVFKGADGSAYLEMGQTKIIAIVKGPREVTRRQDRKYDTGIV 72
Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119
EY + P S R KR + EI + + L QI I VI
Sbjct: 73 NCEYNVAPFSGSERKKRRPTERK----GMEIALAVKEVFEGAIMLHLYPRTQIDIYLHVI 128
Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179
Q+DGG I A +AL D M D V A S G L G P++DL+Y
Sbjct: 129 QSDGGVLPVGINAASLALVDAGVAMSDL-------------VVACSAGYLDGMPVMDLNY 175
Query: 180 GEDSTIDVDANF-VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
E + V+ + ++ + + + F +L A D + ++ + +
Sbjct: 176 VEQALGGPYLPVAVLPEKDKLLLAKM---ESRLPLEIFEEVLRAATDACQQVHEVLRAAV 232
Query: 239 SNE 241
Sbjct: 233 KEH 235
>gi|221114702|ref|XP_002157039.1| PREDICTED: similar to Exosome complex exonuclease RRP42 [Hydra
magnipapillata]
Length = 279
Score = 86.8 bits (213), Expect = 2e-15, Method: Composition-based stats.
Identities = 39/254 (15%), Positives = 72/254 (28%), Gaps = 15/254 (5%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
R GR N R I++ + GS VK T++L E P+ +
Sbjct: 22 FRTDGRSCNDYRAITVQTGIISNTSGSAQVKLAGTNVLIGVKAEISEPLPSKPNLGKVEF 81
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
S + + + + L + + + ID V++
Sbjct: 82 FVDCSANASPIFEGRGGDELAFELSAALQNTFSGAIDLEKLCIIPGKACWILYIDALVLE 141
Query: 121 ADGGTRTAAITGAWVALHDCLQHME------DCSNKFQLSQVLKGHVAAISC-------G 167
G A ALH+ + +S
Sbjct: 142 CGGNLFDALSIAVKAALHNTRIPTLSIIGEGAEKSIEVSDDPYNSTPIDVSNIPVLVTLN 201
Query: 168 MLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRI 227
+ IVD E+ D + G++ VQ + D F ML + + I
Sbjct: 202 KVGERYIVDATAEEEICSDAQLLVSINQKGNVCSVQKHGSGG-INPDLLFEMLKVGRK-I 259
Query: 228 ADLIKLQKDVISNE 241
++ Q +++ +
Sbjct: 260 GRILNEQLNLVLEK 273
>gi|198426220|ref|XP_002120565.1| PREDICTED: similar to Exosome complex exonuclease RRP43 (Ribosomal
RNA-processing protein 43) (Exosome component 8) (p9)
(Opa-interacting protein 2) [Ciona intestinalis]
Length = 279
Score = 86.8 bits (213), Expect = 2e-15, Method: Composition-based stats.
Identities = 43/250 (17%), Positives = 77/250 (30%), Gaps = 15/250 (6%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+R R Q+R+ +L A+GS LVK G+T ++ E P K G I
Sbjct: 22 IRPDTRTLQQIRKTTLNVGPITTADGSALVKIGNTMVMCGVKAELTQPTAEEP-KKGIIV 80
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGS---RQIIIDCD 117
+ + + Q G + L + DL + + D
Sbjct: 81 PNLDLPALCSSKFKPGPPNTQAQVGTKFLDNLIKIANLVNSEDLCIVPDKLVWVLYCDVT 140
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQ----------VLKGHVAAISCG 167
+ DG AA+ AL + + + VA+
Sbjct: 141 CLNYDGCVIDAAVVALVAALRSVSLPSVTLNEETDTPVTNINEKTPLTINCLPVASSFSF 200
Query: 168 MLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRI 227
+ I D E+ V + +++ V + ++D + + R
Sbjct: 201 FESEHIITDPTLSEEDITSGCLTVVSDEHENLLLVDRPG-GVSITEDQLEICIQRSFKRT 259
Query: 228 ADLIKLQKDV 237
++ KL K V
Sbjct: 260 KEVHKLYKAV 269
>gi|54400656|ref|NP_001006077.1| exosome complex exonuclease RRP45 [Danio rerio]
gi|53734430|gb|AAH83243.1| Exosome component 9 [Danio rerio]
gi|182889156|gb|AAI64713.1| Exosc9 protein [Danio rerio]
gi|220678245|emb|CAX14657.1| novel protein similar to vertebrate exosome component 9 (EXOSC9,
zgc:101680) [Danio rerio]
Length = 393
Score = 86.8 bits (213), Expect = 2e-15, Method: Composition-based stats.
Identities = 47/257 (18%), Positives = 80/257 (31%), Gaps = 24/257 (9%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
RL GRQ R I ++ G C+V+ G T +L+ + E VP G +
Sbjct: 23 RLDGRQTYDYRNIKISFGTD---YGCCVVELGKTRVLSQVSCEL-VPPKDSRPTEGIVFF 78
Query: 62 EYGMLPRSTGNRVKREAVS-----GRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
+ P ++ RQ R + I VV + QI +D
Sbjct: 79 NLELSPMASPAFEPNRQSELLVTLNRQLERCLRNSKCIDTESLCVVSGEKV--WQIRVDV 136
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMED-CSNKFQLSQVLKGHVAAISCGMLCGYPI- 174
V+ DG AA A AL + + + +S +
Sbjct: 137 HVLNHDGNLMDAASIAAISALSHFRRPDVAIQGRDVTVFGPEERDPIPLSIYHMPICVSF 196
Query: 175 ----------VDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAK 224
VD E+ D M I +Q S ++ +A
Sbjct: 197 AFFLQGSFLLVDPCEREERVKDGLLVIAMNKHREICSIQSSGGIMLL-KEQVLRCSKIAS 255
Query: 225 DRIADLIKLQKDVISNE 241
+++++ +L + N+
Sbjct: 256 VKVSEITELINKALEND 272
>gi|198434569|ref|XP_002126010.1| PREDICTED: similar to Exosome complex exonuclease MTR3 (mRNA
transport regulator 3 homolog) (Exosome component 6)
[Ciona intestinalis]
Length = 276
Score = 86.8 bits (213), Expect = 2e-15, Method: Composition-based stats.
Identities = 44/238 (18%), Positives = 78/238 (32%), Gaps = 10/238 (4%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT-KHGWIT 60
R GR Q R++ L V A+GS + T ++ + + + M G +
Sbjct: 35 RADGRYVTQPRDVFLQCGVITQAKGSAYFEMNKTKVICSVYGPKDIEMREEFQINKGKLK 94
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
E P S+ G E ++ A+ S V L QI + V++
Sbjct: 95 CELKYAPYSSPK-----HGDHIPGASDVEKSDILLEAISSGVCLQRYPKSQIDVYVIVLE 149
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
DG AAIT A VAL D M D ++ I + ++L+
Sbjct: 150 DDGSVMPAAITAASVALVDAGIEMYDVIT-ASSIRIAGQDTFIIDPTSSEEFSPLNLEKS 208
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
D + ++ + V S + + + +L + + +
Sbjct: 209 NDLNQGMVMVALLPSINQVSSVVSSGHLEC---NVLQEAIRSCRYSAQNLHSIVRKCL 263
>gi|66472734|ref|NP_001018322.1| exosome complex exonuclease MTR3 [Danio rerio]
gi|123905166|sp|Q6P0I8|EXOS6_DANRE RecName: Full=Exosome complex component MTR3; AltName: Full=Exosome
component 6; AltName: Full=mRNA transport regulator 3
homolog
gi|63101434|gb|AAH95173.1| Exosome component 6 [Danio rerio]
gi|68262418|gb|AAH65602.2| Exosome component 6 [Danio rerio]
gi|182890526|gb|AAI64622.1| Exosc6 protein [Danio rerio]
Length = 271
Score = 86.8 bits (213), Expect = 2e-15, Method: Composition-based stats.
Identities = 40/238 (16%), Positives = 79/238 (33%), Gaps = 13/238 (5%)
Query: 6 RQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIR-NTKHGWITAEYG 64
R +R + + A+GS ++ G+T ++ + ++ + K G + ++
Sbjct: 37 RGNGDVRPVFARCGLVSQAKGSAYIEAGNTKIICSVYGPKETERRDETDMKTGRLVCDFR 96
Query: 65 MLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGG 124
+ P S R S +++ + +LR V L QI ++ V++ DG
Sbjct: 97 LAPFSCVKRGAWIQGS-----EERDLSATLMESLRPGVCLHRYPRSQIDVNVMVLENDGS 151
Query: 125 TRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDST 184
A+T A +AL D M D L Q + S CG +
Sbjct: 152 VLAHAVTCASMALADAGIEMYDIVLGCTLRQSGNACLVDPSYAEECGSWQEGYGDNQGCV 211
Query: 185 IDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNEV 242
+ + + E +D + D L + + ++ V
Sbjct: 212 TLALL----PNLNQVSGLNADGEMR---EDTLTEAMRTCMDGCHKLYPVVQQALTRAV 262
>gi|149236726|ref|XP_001524240.1| exosome complex exonuclease RRP41 [Lodderomyces elongisporus NRRL
YB-4239]
gi|146451775|gb|EDK46031.1| exosome complex exonuclease RRP41 [Lodderomyces elongisporus NRRL
YB-4239]
Length = 244
Score = 86.8 bits (213), Expect = 2e-15, Method: Composition-based stats.
Identities = 38/243 (15%), Positives = 75/243 (30%), Gaps = 22/243 (9%)
Query: 1 MRLSGRQENQMREISLTRRVSKYA-EGSCLVKFGDTHLLTTATLE-EKVPMWIRNTKHGW 58
+R+ GR+ N++R + +GS V+ G+T ++ T E N
Sbjct: 12 LRIDGRRWNELRRFECRINTHPNSSDGSSYVEQGNTKVICTVIGPMEPTSRAQMNQDRAN 71
Query: 59 ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDV 118
+ + ST R KR R + + R ++ L I I+ V
Sbjct: 72 VEVNLTIANFSTFERKKRSKTEKRLVEL----RTTLERTFEQLILLHLYPRTNITINVQV 127
Query: 119 IQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLD 178
+ DGG A +AL D M D + + + ++
Sbjct: 128 LNQDGGMLAAVTNSITLALMDAGIAMYDYVSSISCGLHDQSPL-----------LDLNNL 176
Query: 179 YGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
D + ++ ++ ++ D+ +L +A + L +
Sbjct: 177 EENDMSCLTIGVIGKSEKLALLMLE-----DKMPLDNLEKVLGIAIAGSHRIKDLMDMEV 231
Query: 239 SNE 241
Sbjct: 232 RRH 234
>gi|170039450|ref|XP_001847547.1| exosome complex exonuclease RRP43 [Culex quinquefasciatus]
gi|167863024|gb|EDS26407.1| exosome complex exonuclease RRP43 [Culex quinquefasciatus]
Length = 274
Score = 86.8 bits (213), Expect = 3e-15, Method: Composition-based stats.
Identities = 39/254 (15%), Positives = 80/254 (31%), Gaps = 16/254 (6%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+R GR+ +R +++ A+GS +VK G+T ++ E P + + G++
Sbjct: 23 IRPDGREVGDLRPLAINFGSITSADGSSIVKIGNTTVVCGIKAELTPPKPVEP-ETGFLV 81
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRA---LRSVVDLSALGSRQIIIDCD 117
+ P + Q ++ L+ + + D
Sbjct: 82 PNIEISPLCSPKYRPGPPSEEAQVYSCSLADAILNSGCVNLKDLCITKEKLVWALYCDLV 141
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGH----------VAAISCG 167
+ DG A++ ALH + +VL+ S
Sbjct: 142 CLDHDGCVFDASVIALVAALHTLTLPRMRHNADTDEREVLEEEPREALTLSSIPVTTSFA 201
Query: 168 MLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRI 227
+LCG + D E++ + + + S Q+ + A R
Sbjct: 202 VLCGRIVADPTAEEEALATSTITITIC-DATLSYINKSG-GEPVEQELLDQCIENAMKRE 259
Query: 228 ADLIKLQKDVISNE 241
+ L K ++ N+
Sbjct: 260 KSVRALIKTMVKNK 273
>gi|77407303|ref|ZP_00784238.1| polyribonucleotide nucleotidyltransferase [Streptococcus agalactiae
H36B]
gi|77174088|gb|EAO77022.1| polyribonucleotide nucleotidyltransferase [Streptococcus agalactiae
H36B]
Length = 223
Score = 86.4 bits (212), Expect = 3e-15, Method: Composition-based stats.
Identities = 21/105 (20%), Positives = 36/105 (34%), Gaps = 4/105 (3%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56
+R GR+ +++R + GS L G T L+ T E ++ +
Sbjct: 119 IRPDGRRVDEIRPLDAEIDFLPQVHGSGLFTRGQTQALSVLTLAPMGEAQIIDGLTPEYK 178
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSV 101
Y S G + A R+ G +R + + L S
Sbjct: 179 KRFMHHYNFPQYSVGETGRYGAAGRREIGHGALGERALEQVLPSW 223
>gi|320581308|gb|EFW95529.1| exosome component Ski6p, putative [Pichia angusta DL-1]
Length = 246
Score = 86.4 bits (212), Expect = 3e-15, Method: Composition-based stats.
Identities = 37/241 (15%), Positives = 74/241 (30%), Gaps = 26/241 (10%)
Query: 1 MRLSGRQENQMREISLTRRVSKY-AEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWI 59
+R+ GR+ N++R A+GS V+ G++ +L + +
Sbjct: 12 LRVDGRRWNELRRFECQINTHPNAADGSSYVQQGNSKVLCLVKGPMEHGANLAAGTKLDP 71
Query: 60 TAEY-----GMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIII 114
P ++ R KR R QEI ++ R + L I I
Sbjct: 72 NGPVLSLNINYPPFASNERKKRPKNDRRL----QEISIILKRCFMKTIVLKNYSRTAIDI 127
Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPI 174
+ V+ DGG +AL D + D + + + +
Sbjct: 128 NLTVLAMDGGLLACFCNAITLALIDAGISLYDYVSAVSVGLYDQTPL-----------LD 176
Query: 175 VDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
++ D + +D ++ + D +++L + L +L
Sbjct: 177 MNALEENDLSFITIGVVGDSDKLNLTLCE-----DKLPLDKLERLISLGIEGCHRLKELM 231
Query: 235 K 235
Sbjct: 232 D 232
>gi|254168384|ref|ZP_04875229.1| exosome complex exonuclease 1 [Aciduliprofundum boonei T469]
gi|197622665|gb|EDY35235.1| exosome complex exonuclease 1 [Aciduliprofundum boonei T469]
Length = 208
Score = 86.4 bits (212), Expect = 3e-15, Method: Composition-based stats.
Identities = 48/220 (21%), Positives = 90/220 (40%), Gaps = 23/220 (10%)
Query: 24 AEGSCLVKFGDTHLLTTATLEEKV-PMWIRNTKHGWITAEYGMLPRSTGNRVKREAVSGR 82
A+GS +++G ++ + P ++ + A Y M P S R +
Sbjct: 1 ADGSAFIEWGGNKIIAAVYGPHEAYPKHVQEADRAIVRARYSMAPFSVDERKRPG----- 55
Query: 83 QGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVALHDCLQ 142
R+ E+ ++I AL SV+ + I + +V+QAD GTR A IT A +AL D
Sbjct: 56 PDRRAIELSKVISEALESVIFVEKYPRTSIDVYIEVLQADAGTRVAGITVASLALADAGI 115
Query: 143 HMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANF-VMTDSGHIVE 201
M D + + G + ++DL+ ED+ D +M + I
Sbjct: 116 PMRDL-------------IVGCAAGKIDDVVVLDLNKEEDNFGQADVPMAIMPRTKEIAL 162
Query: 202 VQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
+Q + S + +++A D + ++Q + + +
Sbjct: 163 LQMDGD---MSYEELTTAMDMAMDAAEKIHEMQVEALKRK 199
>gi|77797833|ref|NP_001030000.1| exosome complex exonuclease RRP45 [Gallus gallus]
gi|50593178|gb|AAT79383.1| polymyositis/scleroderma autoantigen 1 [Gallus gallus]
Length = 440
Score = 86.4 bits (212), Expect = 3e-15, Method: Composition-based stats.
Identities = 45/257 (17%), Positives = 79/257 (30%), Gaps = 24/257 (9%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
RL GRQ R + ++ G C+V+ G T +L + E VP G +
Sbjct: 23 RLDGRQCYDYRNVRISFGP---EHGCCVVELGKTRVLGQVSCEL-VPPKPNRATEGILFC 78
Query: 62 EYGMLPRSTGNRVKREAVS-----GRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
+ P + R R + I VV + QI +D
Sbjct: 79 NLELSPMAAPGFEPGRQSELLVKVNRLIERCLRNSKCIDTESLCVVAGEKV--WQIRVDL 136
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKF----------QLSQVLKGHVAAISC 166
++ DG AA VAL + K + + +S
Sbjct: 137 HLLNHDGNIVDAASIAGIVALCHFRRPDVSVQGKEVTVYSPEERDPVPLSIHHMPICVSF 196
Query: 167 GMLCGYPIV--DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAK 224
+ D + E+ +D M I +Q S +D +
Sbjct: 197 AFFQQGTYLLVDPNEREERVMDGLLVIAMNKHREICTIQSSGGIMLL-KDQVLRCSKITA 255
Query: 225 DRIADLIKLQKDVISNE 241
++A++ +L + + N+
Sbjct: 256 VKVAEITELIQKALEND 272
>gi|170056939|ref|XP_001864258.1| exosome complex exonuclease RRP43 [Culex quinquefasciatus]
gi|167876545|gb|EDS39928.1| exosome complex exonuclease RRP43 [Culex quinquefasciatus]
Length = 274
Score = 86.4 bits (212), Expect = 3e-15, Method: Composition-based stats.
Identities = 39/254 (15%), Positives = 80/254 (31%), Gaps = 16/254 (6%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+R GR+ +R +++ A+GS +VK G+T ++ E P + + G++
Sbjct: 23 IRPDGREVGDLRPLAINFGSITSADGSSIVKIGNTTVVCGIKAELAPPKPVEP-ETGFLV 81
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRA---LRSVVDLSALGSRQIIIDCD 117
+ P + Q ++ L+ + + D
Sbjct: 82 PNIEISPLCSPKYRPGPPSEEAQVYSCSLADAILNSGCVNLKDLCITKEKLVWALYCDLV 141
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGH----------VAAISCG 167
+ DG A++ ALH + +VL+ S
Sbjct: 142 CLDHDGCVFDASVIALVAALHTLTLPRMRHNADTDEREVLEEEPREALTLSSIPVTTSFA 201
Query: 168 MLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRI 227
+LCG + D E++ + + + S Q+ + A R
Sbjct: 202 VLCGRIVADPTAEEEALATCTITITIC-DATLSYINKSG-GDPVEQELLDQCIENAMKRE 259
Query: 228 ADLIKLQKDVISNE 241
+ L K ++ N+
Sbjct: 260 KSVRALIKTMVKNK 273
>gi|115488270|ref|NP_001066622.1| Os12g0403800 [Oryza sativa Japonica Group]
gi|108862543|gb|ABA97522.2| 3' exoribonuclease family, domain 1 containing protein, expressed
[Oryza sativa Japonica Group]
gi|113649129|dbj|BAF29641.1| Os12g0403800 [Oryza sativa Japonica Group]
gi|215693833|dbj|BAG89032.1| unnamed protein product [Oryza sativa Japonica Group]
gi|222641114|gb|EEE69246.1| hypothetical protein OsJ_28497 [Oryza sativa Japonica Group]
Length = 284
Score = 86.4 bits (212), Expect = 3e-15, Method: Composition-based stats.
Identities = 48/264 (18%), Positives = 88/264 (33%), Gaps = 25/264 (9%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+R GR+ Q R IS+ V A GS V+ G T ++ T E P + G ++
Sbjct: 20 LRTDGRRRLQFRAISVETGVIPQANGSARVRLGATEVIATVKAELGKPSILHP-DKGKVS 78
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRA--------LRSVVDLSALGSRQI 112
P + R + + ++G L S++ + +
Sbjct: 79 IFVDCSPTAAPMFEGRGSEEFSAELCVALQRCLLGGKSGAGAAIDLSSLIVVDGKVCWDL 138
Query: 113 IIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGH------------ 160
ID V+ +DG A VAL D + S + + +
Sbjct: 139 YIDGLVVSSDGNLLDALAAAIKVALSDTGIPKVNVSLSATTDEEPEVNVSDEEFLQFDTS 198
Query: 161 --VAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFA 218
++ + + IVD E+S + + + G I + A F
Sbjct: 199 SVPVIVTLTKVGKHYIVDATSEEESQMSSAVSVSVNRHGQIRGLTKRG-GAGLDPSVIFD 257
Query: 219 MLNLAKDRIADLIKLQK-DVISNE 241
M+++AK I + + ++ E
Sbjct: 258 MISVAKHVSRQFISVLDSETLAAE 281
>gi|313236007|emb|CBY11334.1| unnamed protein product [Oikopleura dioica]
Length = 271
Score = 86.4 bits (212), Expect = 3e-15, Method: Composition-based stats.
Identities = 41/247 (16%), Positives = 83/247 (33%), Gaps = 22/247 (8%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+R GR +++R + L + V+ A+ S +++ G+T ++ T E P +
Sbjct: 28 VRPDGRSLDELRPLVLAKNVAPTADSSAMIRLGNTKVICGITAETIKPAAATPKDGSFSV 87
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGS------RQIII 114
+ A +G +Q + + L+ V + L + I
Sbjct: 88 N------FEFSSVCSPNAKAGPPNEVAQTMSIFLDGILKQVFQTNQLCIEPDLLAWTLFI 141
Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVL---------KGHVAAIS 165
D ++ DG AA+ +L D + V K + +
Sbjct: 142 DVYCLEDDGNVTDAAMMSVISSLRDLKLPEITIDEETAKPLVNLEKQSPVDLKMFPVSTT 201
Query: 166 CGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKD 225
G G ++D E V ++ G ++ S + SQ+ A + +K
Sbjct: 202 YGEFSGILLLDPTARETELGSSPITVVCSEKGALLCFNRSG-GSPLSQEQVAAAIENSKR 260
Query: 226 RIADLIK 232
R + +
Sbjct: 261 RSSTIYD 267
>gi|226372666|gb|ACO51958.1| Exosome complex exonuclease RRP42 [Rana catesbeiana]
Length = 291
Score = 86.1 bits (211), Expect = 3e-15, Method: Composition-based stats.
Identities = 39/258 (15%), Positives = 71/258 (27%), Gaps = 19/258 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+R GR R I L V GS VK G T +L E P + G++
Sbjct: 22 LRTDGRGCEDYRWIELETDVVSNTTGSARVKIGHTDVLVGVKAEMSTPK-LDRPCEGYLE 80
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRA---LRSVVDLSALGSRQIIIDCD 117
+T R + + ++ L S+ L + ID
Sbjct: 81 FFVDCSANATPEFEGRGGEELGTEIANMLYKVFDNKSSIDLESLCILPREHCWTLYIDVL 140
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMED-------CSNKFQLSQVLKGH-------VAA 163
++ G G AL +
Sbjct: 141 LLHCGGSLFDTISIGVKAALFNTRIPKVSVLEDDGGNKEIELSDDPYDCMRLNVENVPCI 200
Query: 164 ISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLA 223
I+ + +VD E++ + G + ++ + + + F M+
Sbjct: 201 ITLCKIGHRHVVDATLQEEACSLASVLVAINIKGTLTCMRKMGK-GSLDPECIFEMIETG 259
Query: 224 KDRIADLIKLQKDVISNE 241
K L ++V++ E
Sbjct: 260 KRVAKSLHLSLRNVLNQE 277
>gi|255578727|ref|XP_002530222.1| exosome complex exonuclease rrp42, putative [Ricinus communis]
gi|223530269|gb|EEF32169.1| exosome complex exonuclease rrp42, putative [Ricinus communis]
Length = 287
Score = 86.1 bits (211), Expect = 4e-15, Method: Composition-based stats.
Identities = 42/261 (16%), Positives = 76/261 (29%), Gaps = 24/261 (9%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+R GR+ + R I + V A GS V+ G T ++ + E P + G +
Sbjct: 20 LRSDGRKRDAYRPIFVETGVIPQANGSARVRIGATEVIASVKAELGRPNAFQP-DKGKVA 78
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEI--------QRMIGRALRSVVDLSALGSRQI 112
P + R + G L S+V +
Sbjct: 79 IFVDCSPVAEPTFEARGGEELSAELSAALQHCLLGGKSGAGAGIDLSSLVVAEGKICWDL 138
Query: 113 IIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGH------------ 160
ID V+ DG A AL + + + +
Sbjct: 139 YIDGLVVSFDGNLLDALGAAIKAALSNTGIPKVHVAAGGLGDEQPEVDISDEEFLQFDTS 198
Query: 161 --VAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFA 218
++ + + IVD E+S + + + GHI + A
Sbjct: 199 GVPVIVTLTKVGRHYIVDATSEEESYMSSAVSVSINRKGHICGLTKRG-GAGIDPSVISD 257
Query: 219 MLNLAKDRIADLIKLQKDVIS 239
++++A+ LI I+
Sbjct: 258 IISVAQHISEQLINKLDSEIA 278
>gi|18398046|ref|NP_566318.1| 3' exoribonuclease family domain 1-containing protein [Arabidopsis
thaliana]
gi|30680427|ref|NP_850537.1| 3' exoribonuclease family domain 1-containing protein [Arabidopsis
thaliana]
gi|11762184|gb|AAG40370.1|AF325018_1 AT3g07750 [Arabidopsis thaliana]
gi|26453010|dbj|BAC43581.1| putative 3' exoribonuclease [Arabidopsis thaliana]
gi|56744222|gb|AAW28551.1| At3g07750 [Arabidopsis thaliana]
gi|332641077|gb|AEE74598.1| 3'-5'-exoribonuclease family protein [Arabidopsis thaliana]
gi|332641078|gb|AEE74599.1| 3'-5'-exoribonuclease family protein [Arabidopsis thaliana]
Length = 286
Score = 86.1 bits (211), Expect = 4e-15, Method: Composition-based stats.
Identities = 39/261 (14%), Positives = 78/261 (29%), Gaps = 24/261 (9%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+R GR+ R I + V A GS V+ G T ++ + E P ++ G +
Sbjct: 19 LRTDGRKRLTYRPIYVETGVIPQANGSARVRIGGTDVIASVKAEIGRPSSLQP-DKGKVA 77
Query: 61 AEYGMLPRSTGNRVKREAV----SGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
P + R + + G + + ++ D
Sbjct: 78 VFIDCSPTAEPTFGGRGGEELSSELALALQRCLLGGKSGAGAGINLSSLLIKEGKVCWDL 137
Query: 117 DVIQADGGTRTAAITGAWVALHDCL------------------QHMEDCSNKFQLSQVLK 158
+ + + A+ L Q D S++ L
Sbjct: 138 YIDGLVISSDGNLLDALGAAIKAALTNTAIPKVNVSAEVADDEQPEIDISDEEYLQFDTS 197
Query: 159 GHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFA 218
++ + + IVD E+S + + + +GHI + + +
Sbjct: 198 SVPVIVTLTKVGTHYIVDATAEEESQMSSAVSISVNRTGHICGLTKRS-GSGLDPSVILD 256
Query: 219 MLNLAKDRIADLIKLQKDVIS 239
M+++AK L+ IS
Sbjct: 257 MISVAKHVTETLMSKLDSEIS 277
>gi|297829840|ref|XP_002882802.1| hypothetical protein ARALYDRAFT_341414 [Arabidopsis lyrata subsp.
lyrata]
gi|297328642|gb|EFH59061.1| hypothetical protein ARALYDRAFT_341414 [Arabidopsis lyrata subsp.
lyrata]
Length = 294
Score = 86.1 bits (211), Expect = 4e-15, Method: Composition-based stats.
Identities = 35/244 (14%), Positives = 73/244 (29%), Gaps = 10/244 (4%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+R+ GR R++++ GS V+ G TH++ T + V + G +
Sbjct: 27 LRVDGRGLYDYRKLTIKFG---KEYGSSEVQLGQTHVMAFVTAQL-VQPYKDRPNEGSFS 82
Query: 61 AEYGMLPRSTGNRVKREAVSGR-QGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119
P + + + GR + R + + G +
Sbjct: 83 IFTEFSPMADPSFEPVHPGESAVELGRIIDRALRESRVVDTESLCVFAGKLVWNLVDAAN 142
Query: 120 QADGGTRTAAITGAWVA--LHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG--YPIV 175
A + + + L ++ A + G ++
Sbjct: 143 IAALAALLTFRRPDCTVGGENSQEVIIHPPEEREPLPLIIHHLPIAFTFGFFNKGSILVM 202
Query: 176 DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
D E++ + + +G I +Q E +Q L LA R A K+ +
Sbjct: 203 DPTVVEEAVMSGRMTVTVNANGDICAIQKPGEEG-VNQSVILHCLRLASSRAAATTKIIR 261
Query: 236 DVIS 239
+ +
Sbjct: 262 EAVE 265
>gi|328866292|gb|EGG14677.1| hypothetical protein DFA_10935 [Dictyostelium fasciculatum]
Length = 282
Score = 86.1 bits (211), Expect = 4e-15, Method: Composition-based stats.
Identities = 39/260 (15%), Positives = 78/260 (30%), Gaps = 23/260 (8%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+R GR R L +A GS + DTH+L + P + G +T
Sbjct: 22 LRNDGRTRLDYRPFELDIGEISHAVGSSRIILADTHILVGIKADISAPDPL-TPNKGSLT 80
Query: 61 AEYGMLPRSTGNRVKR-----EAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115
P ++ + +Q R + + ++ + ID
Sbjct: 81 FSVDCCPSASPEYEGKGADYINIELAKQLERVMKDSNSMDLGGLCIMPGKYC--WNLYID 138
Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGH--------------V 161
V+ + G A G AL + + + +
Sbjct: 139 AIVLDSGGNLFDALSIGVRAALANTRLPTIRITQGEYSTVDFEVSDDPEAMQSLDIDGVP 198
Query: 162 AAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLN 221
++ + +VD E+ +D + G+I +Q A M+
Sbjct: 199 INVTLTTIGNQFVVDCSGEEEQCMDARMTIGVNKRGNICGIQKGG-VAGIDAHTINQMIL 257
Query: 222 LAKDRIADLIKLQKDVISNE 241
AK ++++K +V+ +
Sbjct: 258 AAKQVGSEILKTMDNVLKDH 277
>gi|313236425|emb|CBY11742.1| unnamed protein product [Oikopleura dioica]
Length = 288
Score = 86.1 bits (211), Expect = 4e-15, Method: Composition-based stats.
Identities = 37/255 (14%), Positives = 70/255 (27%), Gaps = 19/255 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR GR N R I + + GS V+ G T LL E + + G I
Sbjct: 25 MRTDGRTCNDFRVIEMETSCIETTNGSARVRIGSTELLVGVKAELEKASLVDG-DAGRIE 83
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
P +T R + + R + V
Sbjct: 84 FSVDCSPNATPMFEGRRGGEDIEAEIASLFSRFYKAEEFMDRKKLTVVPNAWCWVLYVDI 143
Query: 121 ADGGTRTAAITGAWVALHDCLQ-----------HMEDCSNKFQLSQVLK------GHVAA 163
+ + +A+ L+ ED + L
Sbjct: 144 LILEVGGNLVDASSIAVKAALRDTRLPLLNIEKGDEDEYDIQVSDDPLDGEELDIHPPLT 203
Query: 164 ISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLA 223
++ L IVD E++ + + ++G ++ + + + M+++A
Sbjct: 204 VTVAKLGHRYIVDPTDEEEAVTLANLIVSVNENGEARGMKQTGK-GSLDPSSILEMISIA 262
Query: 224 KDRIADLIKLQKDVI 238
K L + +
Sbjct: 263 KKAAKTLHRSVNRAL 277
>gi|156101467|ref|XP_001616427.1| exosome complex exonuclease [Plasmodium vivax SaI-1]
gi|148805301|gb|EDL46700.1| exosome complex exonuclease, putative [Plasmodium vivax]
Length = 518
Score = 86.1 bits (211), Expect = 4e-15, Method: Composition-based stats.
Identities = 33/255 (12%), Positives = 74/255 (29%), Gaps = 19/255 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+RL GR+ R IS+ G+ V G T ++ T E V + + G I
Sbjct: 19 LRLDGRKFEDSRNISI---YFLGEHGNVEVSIGHTKVICKITSEI-VKPFDKRPNEGIIK 74
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
+ + N + + + E L + + ++I
Sbjct: 75 VNLDIDSFTNVNDNSQISDECLEIKNLIERILKSSNLLNLESLCIIPHKKVWCLLVNIIV 134
Query: 121 ADGGTRTAAIT-------------GAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCG 167
+ +E+ + + +
Sbjct: 135 IENDGNLYDSCYLSAYSGLVHYRNNEVTVDSSGNIIIEEGETNYTPLSIHNTPILTTFAY 194
Query: 168 MLCGYPIV-DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226
C + D E+ + + + +G +V + + S + + LAK R
Sbjct: 195 FNCEDICLIDPSIHEEEFMSSKLSVALNKNGKLVSILKPG-GSPISYEKILEAIELAKKR 253
Query: 227 IADLIKLQKDVISNE 241
+ ++K+ +D + +
Sbjct: 254 VKSILKILEDALEED 268
>gi|313221392|emb|CBY32145.1| unnamed protein product [Oikopleura dioica]
Length = 288
Score = 86.1 bits (211), Expect = 4e-15, Method: Composition-based stats.
Identities = 37/255 (14%), Positives = 70/255 (27%), Gaps = 19/255 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR GR N R I + + GS V+ G T LL E + + G I
Sbjct: 25 MRTDGRTCNDFRVIEMETSCIETTNGSARVRIGSTELLVGVKAELEKASLVDG-DAGRIE 83
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
P +T R + + R + V
Sbjct: 84 FSVDCSPNATPMFEGRRGGEDIEAEIASLFSRFYKAEEFMDRKKLTVVPNAWCWVLYVDI 143
Query: 121 ADGGTRTAAITGAWVALHDCLQ-----------HMEDCSNKFQLSQVLK------GHVAA 163
+ + +A+ L+ ED + L
Sbjct: 144 LILEVGGNLVDASSIAVKAALRDTRLPLLNIEKGDEDEFDIQVSDDPLDGEELDIHPPLT 203
Query: 164 ISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLA 223
++ L IVD E++ + + ++G ++ + + + M+++A
Sbjct: 204 VTVAKLGHRYIVDPTDEEEAVTLANLIVSVNENGEARGMKQTGK-GSLDPSSILEMISIA 262
Query: 224 KDRIADLIKLQKDVI 238
K L + +
Sbjct: 263 KKAAKTLHRSVNRAL 277
>gi|255720833|ref|XP_002545351.1| exosome complex exonuclease RRP41 [Candida tropicalis MYA-3404]
gi|240135840|gb|EER35393.1| exosome complex exonuclease RRP41 [Candida tropicalis MYA-3404]
Length = 240
Score = 86.1 bits (211), Expect = 4e-15, Method: Composition-based stats.
Identities = 47/243 (19%), Positives = 91/243 (37%), Gaps = 22/243 (9%)
Query: 1 MRLSGRQENQMREISLTRRVSKYA-EGSCLVKFGDTHLLTTATLEEKVP-MWIRNTKHGW 58
+R+ GR+ N++R + +GS V+ G+T ++ T + ++++H
Sbjct: 9 LRIDGRRWNELRRFECRINTHPNSSDGSSYVEQGNTKVVCTVQGPIEPQLRSQQHSEHAN 68
Query: 59 ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDV 118
I + +T R KR R ++ + + ++ III+ V
Sbjct: 69 IEINLTIANFATFERKKRNKNEKRLIELK----NILEKTFMESIMINLYPRTNIIINIQV 124
Query: 119 IQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLD 178
+ DGG +A +AL D M D V++I+CG+ P++DL+
Sbjct: 125 LSQDGGLLSAITNSITLALIDSGISMYDY-------------VSSINCGLYDTTPLLDLN 171
Query: 179 YGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
E++ I V+ S + + D +L+LA + L +
Sbjct: 172 NLEENDISNLTIGVIGKSEKLALLLS---EDKMPLDRLENVLSLAIAGSHRIRDLMDQEV 228
Query: 239 SNE 241
Sbjct: 229 RKH 231
>gi|59006476|emb|CAI46226.1| hypothetical protein [Homo sapiens]
Length = 248
Score = 86.1 bits (211), Expect = 4e-15, Method: Composition-based stats.
Identities = 37/240 (15%), Positives = 72/240 (30%), Gaps = 19/240 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R GR+ + R ++ A+GS LVK G+T ++ P
Sbjct: 23 RPDGRELGEFRTTTVNIGSISTADGSALVKLGNTTVICGVKAFRSGPP------------ 70
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
G + + + + + DL L I+D
Sbjct: 71 --GEEAQVASQFIADVIENSQIIQKEDLCISPGKLVWVLYCDLICLDYDGNILDACTFAL 128
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY-PIVDLDYG 180
+ + + L + + K + ++ H A S + IVD
Sbjct: 129 LAALKNVQLPEVTINEETALA---EVNLKKKSYLNIRTHPVATSFAVFDDTLLIVDPTGE 185
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
E+ VM + G + + + + ++ A R ++ KL +VI +
Sbjct: 186 EEHLATGTLTIVMDEEGKLCCLHKPG-GSGLTGAKLQDCMSRAVTRHKEVKKLMDEVIKS 244
>gi|225716114|gb|ACO13903.1| Exosome complex exonuclease RRP42 [Esox lucius]
Length = 291
Score = 86.1 bits (211), Expect = 4e-15, Method: Composition-based stats.
Identities = 37/258 (14%), Positives = 69/258 (26%), Gaps = 19/258 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+R+ GR R + + V +GS V G T +L E P + G++
Sbjct: 22 LRVDGRGCEDYRHMEIETDVVSNTDGSAKVSLGHTDVLVGVKAEIGKPRPMVPH-EGYLE 80
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRA---LRSVVDLSALGSRQIIIDCD 117
+T R + + R+ L+S+ + +D
Sbjct: 81 FFVDCSANATPEFEGRGGDELGVELSNTLYKVFNNRSSIDLKSLCISPGEHCWVLYVDVL 140
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMED-------CSNKFQLSQVLKGH-------VAA 163
++Q DG A AL +
Sbjct: 141 LLQCDGNLFDAISVAIKAALFNTKIPKVHLSENEEGGKEIELSDDPYDCMRLNVENVPCI 200
Query: 164 ISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLA 223
++ + +VD E + +T G I V+ + + F
Sbjct: 201 VTLCKVGYRHVVDATLQEKACSVASLIISVTHKGTITCVRKVG-GGSLDPESIFETTETG 259
Query: 224 KDRIADLIKLQKDVISNE 241
K L +++ E
Sbjct: 260 KRVGKALHAPLMELLQKE 277
>gi|134076396|emb|CAK48214.1| unnamed protein product [Aspergillus niger]
Length = 248
Score = 86.1 bits (211), Expect = 4e-15, Method: Composition-based stats.
Identities = 34/245 (13%), Positives = 74/245 (30%), Gaps = 19/245 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+RL GR+ N++R + + + GS + G+T +L + +
Sbjct: 14 LRLDGRRWNELRLLQAQISTNPASSGSSYLAMGNTAILCSVHGPAEGRRGDATGGAAGSA 73
Query: 61 A-----EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115
+ + + +R +R S +Q + ++ A +S + I I
Sbjct: 74 GAVVEVDVNVAGFAGVDRKRRAGGSDKQS---SRVATILRSAFQSHLHTHLYPHSTISIH 130
Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIV 175
V+ +DG AA+ +AL D M S +
Sbjct: 131 VSVLSSDGSLLAAAVNACTLALVDAGIPMPGLLCGCTASTPRDP--------NNDTLDPL 182
Query: 176 DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
+ T + + + ++ + L + D + ++ +
Sbjct: 183 LDLSLPEEQELPFLTVGTTTAMKVAMLTMDSKVHCTYVETM---LAVGIDGCKQIREILE 239
Query: 236 DVISN 240
VI
Sbjct: 240 GVIKK 244
>gi|168031159|ref|XP_001768089.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162680727|gb|EDQ67161.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 276
Score = 86.1 bits (211), Expect = 4e-15, Method: Composition-based stats.
Identities = 35/255 (13%), Positives = 65/255 (25%), Gaps = 21/255 (8%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R+ GR R + + K +GS V+ G T +L E P R +
Sbjct: 25 RIDGRTPFDYRRLQIK--FLK-EDGSVEVQLGQTRVLAVVKGEITQPYPDRGNEGSLAIF 81
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
R + + GR + RA+ + G I D+
Sbjct: 82 TEFSPMGDPAFEPGRPSEMAVELGRIIDRGLRESRAVDTESLCILSGRSVWSIRVDIHIL 141
Query: 122 DGGTRTAAIT---------------GAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISC 166
D + + + ++ A++
Sbjct: 142 DNYGNLVDAANLAALAALLSYRRPECTVGGDDGQQIIVHPPEVREPVGLIIHHLPIAVTF 201
Query: 167 GMLCGYPI--VDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAK 224
+D + E+ + + G I VQ S L +A
Sbjct: 202 AFFGDGNFQVLDPNLKEEEVMGGRITITINSQGEICAVQKGG-GVGVSASEVMRCLRIAA 260
Query: 225 DRIADLIKLQKDVIS 239
+ + + K +S
Sbjct: 261 AKAQSMTETLKKAVS 275
>gi|67476142|ref|XP_653674.1| 3' exoribonuclease family protein [Entamoeba histolytica HM-1:IMSS]
gi|56470674|gb|EAL48311.1| 3' exoribonuclease family protein [Entamoeba histolytica HM-1:IMSS]
Length = 265
Score = 85.7 bits (210), Expect = 5e-15, Method: Composition-based stats.
Identities = 34/248 (13%), Positives = 75/248 (30%), Gaps = 10/248 (4%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPM--WIRNTKHGW 58
+R GR Q REI + V A GS + G T ++ E P + ++
Sbjct: 20 IRTDGRANIQFREIKCEKGVIDQANGSVRLCLGKTEVVVGVKCELGEPSVLTPESGRYNV 79
Query: 59 ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDV 118
+ + G + K VS G+ + + + + + + +
Sbjct: 80 LVKQVGTMTSRDVEIEKMILVSLENAGKDMLQELCVLKGKLCWIIYVDVVVVEDDGNVMD 139
Query: 119 IQADG------GTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY 172
T + ++ + +F+ + + +S
Sbjct: 140 CTGLAVRAALLNTLIPIVNVISGDSDTVQVDIDKDNVQFKKFKPESVPLC-VSLIQFEKE 198
Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
I D E+ + +T +G + +Q F + + M+ A+ L K
Sbjct: 199 FIADPSKVEEKCNGSEITTAITSNGKVCGIQKGGN-GCFKTEEMYDMIIQAQMIGLKLFK 257
Query: 233 LQKDVISN 240
+++
Sbjct: 258 ELDELLEE 265
>gi|291234442|ref|XP_002737157.1| PREDICTED: hypothetical protein [Saccoglossus kowalevskii]
Length = 560
Score = 85.7 bits (210), Expect = 5e-15, Method: Composition-based stats.
Identities = 39/212 (18%), Positives = 61/212 (28%), Gaps = 35/212 (16%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE--------EKVPMWIRN 53
R GR +R+IS + K GS L + G T +L T T + + + I
Sbjct: 365 RCDGRSLTALRDISCEVDMYKPLHGSALFQRGQTQVLCTVTFDSIDSALKGDALSEIISG 424
Query: 54 TKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQII 113
K Y P +T + S R+ G +AL+ V+
Sbjct: 425 IKEKNFLLHYEFPPFATNEVGR-MFASRRELGHGAL----AEKALKPVIPKKFPF----- 474
Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP 173
I L + + V K +
Sbjct: 475 ---------------TIRLTSEVLESNGVPITAAVAGVAIGLVAKTED-DNRSNITDYRL 518
Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGS 205
+ D+ ED D+D T G I +Q +
Sbjct: 519 MTDILGIEDYMGDMDFKMAGTKKG-ITALQVT 549
Score = 85.7 bits (210), Expect = 5e-15, Method: Composition-based stats.
Identities = 41/225 (18%), Positives = 75/225 (33%), Gaps = 26/225 (11%)
Query: 13 EISLTRR-VSKYAEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTKHGWITAEYGMLP 67
+ L+ ++++A+G + + G+T ++ TA T A G +P
Sbjct: 61 PLKLSTGKLARFADGCAIAQIGETSVMVTAISKTTPSASSSFLPLTVDFRQKAAAAGRIP 120
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
+ R + R+I R++R + + QII +C +
Sbjct: 121 MNHLRRERG------PTDFEILTSRVIDRSIRPLFPQGYVFDSQIICNCLAVDGINDPDI 174
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
+I A A G V A+ G++ G IV+ E +
Sbjct: 175 LSINAASAA-------------LSLSDIPWNGPVGAVRMGLIDGKFIVNPTRLELIKSKL 221
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
+ + IV ++GSAE Q F + L +I
Sbjct: 222 NLIVTGSKKSSIVMLEGSAEN--ILQPEFCKAIKLGIKETNQIIN 264
>gi|167392099|ref|XP_001740016.1| exosome complex exonuclease RRP42 [Entamoeba dispar SAW760]
gi|165896056|gb|EDR23596.1| exosome complex exonuclease RRP42, putative [Entamoeba dispar
SAW760]
Length = 265
Score = 85.7 bits (210), Expect = 5e-15, Method: Composition-based stats.
Identities = 34/248 (13%), Positives = 75/248 (30%), Gaps = 10/248 (4%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPM--WIRNTKHGW 58
+R GR Q REI + V A GS + G T ++ E P + ++
Sbjct: 20 IRTDGRANIQFREIKCEKGVIDQANGSVRLCLGKTEVVVGVKCELGEPSILTPESGRYNV 79
Query: 59 ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDV 118
+ + G + K VS G+ + + + + + + +
Sbjct: 80 LVKQVGTMTSRDVEIEKMILVSLENAGKDMLQELCVLKGKLCWIIYVDVVVVEDDGNVMD 139
Query: 119 IQADG------GTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY 172
T + ++ + +F+ + + +S
Sbjct: 140 CTGLAVRAALLNTLIPIVNVISGDSDTVQVDIDKDNVQFKKFKPESVPLC-VSLVQFEKE 198
Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
I D E+ + +T +G + +Q F + + M+ A+ L K
Sbjct: 199 FIADPSKVEEKCNGSEITTAITSNGKVCGIQKGGN-GCFKTEEMYDMIIQAQMIGLKLFK 257
Query: 233 LQKDVISN 240
+++
Sbjct: 258 ELDELLEE 265
>gi|332023404|gb|EGI63647.1| Exosome complex exonuclease RRP43 [Acromyrmex echinatior]
Length = 278
Score = 85.7 bits (210), Expect = 5e-15, Method: Composition-based stats.
Identities = 40/252 (15%), Positives = 69/252 (27%), Gaps = 15/252 (5%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+R GR+ R +S+ A+ S + K GDT + E P HG+I
Sbjct: 18 VRTDGRKFLSFRPVSVNVSSIVQADSSAIFKLGDTTAVCGIKAELAAPKA-DTPDHGYIV 76
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEI---QRMIGRALRSVVDLSALGSRQIIIDCD 117
+ P + Q L+ + + + D
Sbjct: 77 PNVELSPLCSSKFRPGPPSEQAQVLSKFIDIILSNSAALDLKDLCICKSKLVWVLYCDIL 136
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKF----------QLSQVLKGHVAAISCG 167
+ +G A AL + + + + V ++
Sbjct: 137 CLNYNGSVIDACTGALMAALKTLTLPEVNYTKETALTIVNPKNRKKFIVRTLPISTSFAV 196
Query: 168 MLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRI 227
+ D E+ + VM D I V SQ+ L +AK R
Sbjct: 197 FEKRLLVADPTDDEEDLSSGKFSIVMDDEEKICYVHKPG-GIPISQNLLSKGLEMAKTRA 255
Query: 228 ADLIKLQKDVIS 239
+ + IS
Sbjct: 256 KLVRSVINAAIS 267
>gi|156553642|ref|XP_001600402.1| PREDICTED: similar to exosome component 1 [Nasonia vitripennis]
Length = 277
Score = 85.7 bits (210), Expect = 5e-15, Method: Composition-based stats.
Identities = 38/248 (15%), Positives = 77/248 (31%), Gaps = 14/248 (5%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R GR+ R +S+ A+ S + K G+T ++ E P G+I
Sbjct: 23 RPDGREFISFRPVSVNIGSITQADSSAVFKIGNTSVVCGIKAELASPKA-ETPDCGFIIP 81
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRA---LRSVVDLSALGSRQIIIDCDV 118
+ P S+ Q + ++ L+ + + D
Sbjct: 82 NVDLSPLSSSKFRPGPPGEETQCATKLVERILVNSEAVDLKDLCIHKDKLVWVLYCDLIC 141
Query: 119 IQADGGTRTAAITGAWVALHDCLQHMEDC---------SNKFQLSQVLKGHVAAISCGML 169
I DG A I A + + +K ++S L+ A+ + +
Sbjct: 142 IDYDGSVIDACIGALVAAFKILTLPVVEYTIETGATKVDDKNRISVPLRQLPASTTFAIF 201
Query: 170 CGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIAD 229
++ ++ + + ++ + + V S SQ ++ AK R
Sbjct: 202 DNQLLITDPTEDEEKLALSTLTIVFNEKSMCMVHKSG-GIPMSQKLLSKCVSKAKSRGEQ 260
Query: 230 LIKLQKDV 237
+ KL
Sbjct: 261 VRKLILTA 268
>gi|307176033|gb|EFN65792.1| Exosome complex exonuclease RRP42 [Camponotus floridanus]
Length = 426
Score = 85.7 bits (210), Expect = 5e-15, Method: Composition-based stats.
Identities = 38/259 (14%), Positives = 70/259 (27%), Gaps = 20/259 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGD-THLLTTATLEEKVPMWIRNTKHGWI 59
+R GR Q R I + R+ +A GS ++ G+ T +L LE P + G +
Sbjct: 156 LRNDGRSRCQYRSIEIETRLMPHAHGSARLRIGNITDVLVGVKLEIDTPYAEKP-DEGKL 214
Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIG------RALRSVVDLSALGSRQII 113
+T + + R L + I
Sbjct: 215 DFFVDCSANATPAFEGKGGDDLATEISNVLSMAYQTPDVFDLRQLCIIPHKKCWKMYVDI 274
Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGH-----------VA 162
+ AA+ A QV +
Sbjct: 275 LILQCGGNLFDAVGAAVKAALYNTEIPKVIAATLDGGEPDIQVSDDPYDCIKLDITTYPS 334
Query: 163 AISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNL 222
++ + ++D E+S V+ + +G + + + ML +
Sbjct: 335 IVTVCKIGDNFVIDPTLEEESCSAVNIIMSVMPNGKVTSMVKQGYGSLLP-TTLIKMLEV 393
Query: 223 AKDRIADLIKLQKDVISNE 241
KD L + K + E
Sbjct: 394 GKDIGLKLNEALKKTLEEE 412
>gi|254570999|ref|XP_002492609.1| 3'-to-5' phosphorolytic exoribonuclease that is a subunit of the
exosome [Pichia pastoris GS115]
gi|238032407|emb|CAY70430.1| 3'-to-5' phosphorolytic exoribonuclease that is a subunit of the
exosome [Pichia pastoris GS115]
gi|328353384|emb|CCA39782.1| exosome complex component RRP41 [Pichia pastoris CBS 7435]
Length = 246
Score = 85.3 bits (209), Expect = 6e-15, Method: Composition-based stats.
Identities = 47/242 (19%), Positives = 88/242 (36%), Gaps = 21/242 (8%)
Query: 1 MRLSGRQENQMREISLTRRVSK-YAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWI 59
+R+ GR+ N++R A+GS V+ G+T ++ + NT+ G +
Sbjct: 9 LRVDGRRWNELRRFYCRINTHPIVADGSAYVEAGNTKIVCLLNGPHEPTRSQMNTQKGSL 68
Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119
+ + P ST R K R QE+ ++ VV L I ++ V+
Sbjct: 69 DIKLHVSPFSTTERRKVTRNDRR----IQELSTILKNTFEQVVILKNYPRTIIEVNVRVL 124
Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179
DGG A +AL D + D ++A+S G+ ++DL+
Sbjct: 125 AQDGGLLAACCNAITLALVDAGIALYDY-------------ISAVSAGVFDNQILLDLNR 171
Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
E+ + V+ + + V QD + +A + L ++
Sbjct: 172 LEEQDLSSVTIGVVGKTKKLSLVLS---ETRLPQDRLAKVFEVAVNGCHQLKDQMDAQVA 228
Query: 240 NE 241
+
Sbjct: 229 KK 230
>gi|147898885|ref|NP_001085439.1| exosome component 9 [Xenopus laevis]
gi|49114791|gb|AAH72749.1| SCL75 protein [Xenopus laevis]
Length = 431
Score = 85.3 bits (209), Expect = 6e-15, Method: Composition-based stats.
Identities = 45/260 (17%), Positives = 84/260 (32%), Gaps = 30/260 (11%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
RL GRQ R I + G C+V+ G T +L + E P R G +
Sbjct: 23 RLDGRQTYDYRNIKIAFGTD---YGCCIVELGKTRVLCQVSCEIVTPKMSRP-TEGILFF 78
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSA--------LGSRQII 113
+ P + GRQ S ++ R++ R LR+ + QI
Sbjct: 79 NLEISPMAFPGFEM-----GRQSELSVKLNRLLERCLRNSKCIDTESLCVAAGEKVWQIR 133
Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMED----------CSNKFQLSQVLKGHVAA 163
+D ++ +G AA A L + + + +
Sbjct: 134 VDLHLLNHEGNIIDAASIAAIAGLCHFRRPDVSVQGEEVTVYTPEERDPVPLSIHHMPIC 193
Query: 164 ISCGMLCGYPIV--DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLN 221
+S + D + E+ +D M I +Q S ++
Sbjct: 194 VSFAFFQQGIYLLVDPNEREERVMDGLLVIAMNKHREICTIQSSGGIMLL-KEQVLRCSK 252
Query: 222 LAKDRIADLIKLQKDVISNE 241
+A ++ ++ +L + + N+
Sbjct: 253 VAGVKVGEITELIQKALEND 272
>gi|297285946|ref|XP_002802903.1| PREDICTED: exosome complex exonuclease RRP42-like [Macaca mulatta]
Length = 556
Score = 85.3 bits (209), Expect = 7e-15, Method: Composition-based stats.
Identities = 34/258 (13%), Positives = 73/258 (28%), Gaps = 19/258 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+R+ GR R + + V GS VK G T +L E P + G++
Sbjct: 22 LRVDGRGCEDYRCVEVETDVVSNTSGSARVKLGHTDILVGVKAEMGTPK-LEKPNEGYLE 80
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRA---LRSVVDLSALGSRQIIIDCD 117
+T R + + ++ L+++ + +D
Sbjct: 81 FFVDCSANATPEFEGRGGDDLGTEIANTLYRIFNNKSSVDLKTLCISPREHCWVLYVDVL 140
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMED-------CSNKFQLSQVLKGH-------VAA 163
+++ G A AL + +
Sbjct: 141 LLECGGNLFDAISIAVKAALFNTSIPRVRVLEDEEGSKDIELSDDPYDCIRLSVENVPCI 200
Query: 164 ISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLA 223
++ + +VD E++ +T G + ++ + + + F M+
Sbjct: 201 VTLCKIGYRHVVDATLQEEACSLASLLVSVTSKGVVTCMRKVGK-GSLDPESIFEMMETG 259
Query: 224 KDRIADLIKLQKDVISNE 241
K L + V+ E
Sbjct: 260 KRVGKVLHASLQSVLHKE 277
>gi|255711166|ref|XP_002551866.1| KLTH0B01738p [Lachancea thermotolerans]
gi|238933244|emb|CAR21428.1| KLTH0B01738p [Lachancea thermotolerans]
Length = 245
Score = 85.3 bits (209), Expect = 7e-15, Method: Composition-based stats.
Identities = 42/243 (17%), Positives = 83/243 (34%), Gaps = 21/243 (8%)
Query: 1 MRLSGRQENQMREISLTRRVSKYA-EGSCLVKFGDTHLLTTATLEEKVP-MWIRNTKHGW 58
+R+ GR+ N++R + + A +GS ++ G+ ++T T ++ N
Sbjct: 12 LRVDGRRWNELRRLECSINTHANASDGSSYLEQGNNKVITLVTGPQEPKLRSQMNVTKAT 71
Query: 59 ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDV 118
I+ + S R K + R R E+Q + R V L QI I V
Sbjct: 72 ISVALNITRFSKIERSKSSHKNER---RVLEMQTALVRTFEKNVMLHLYPRTQIEIQIHV 128
Query: 119 IQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLD 178
+Q DGG ++ I G +AL D M D + + + ++
Sbjct: 129 LQQDGGLMSSLINGITLALIDAGIAMYDYISGVSIGLYDTTPL-----------LDLNSV 177
Query: 179 YGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
+ ++ ++ V+ D ++L + + +L +
Sbjct: 178 EENAMSSVTLGVVGKSEKLSLLLVE-----DKIPLDRMESVLAIGIAGSHRIRELMDKEL 232
Query: 239 SNE 241
Sbjct: 233 RKH 235
>gi|326422493|gb|EGD71890.1| Putative exosome complex RNA-binding protein [Candidatus
Parvarchaeum acidophilus ARMAN-5_'5-way FS']
Length = 253
Score = 85.3 bits (209), Expect = 8e-15, Method: Composition-based stats.
Identities = 43/242 (17%), Positives = 84/242 (34%), Gaps = 7/242 (2%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+RL R+ + R +++ V +++GS V+ G+T ++ + P R I
Sbjct: 17 LRLDQREAFEGRRMAIKDNVINHSDGSAYVELGNTKVIAGVKVLNGTPFPDRPADGALIV 76
Query: 61 AEY--GMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDV 118
+ G+R+ GR R +I L + + +D
Sbjct: 77 NFELSELTSNYPGDRINSSIEVGRVTDRGIRESNLID--LSKLCVEEGKTVLFVYVDIVC 134
Query: 119 IQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLD 178
I +G A A A+ + +E KF L + + + G D
Sbjct: 135 INNEGNLFDAGNIAALRAILNTRYSIEGKEGKFSLPIDRTKLAISHTFTKINGTIFFDPS 194
Query: 179 YGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
E++ D + + S I +Q + F+ + + A + + K+ D I
Sbjct: 195 AEEENVEDTKLSIGI--SDKINSLQKGGD-GFFTAEEVDKCIEKAIELREERFKILMDGI 251
Query: 239 SN 240
S+
Sbjct: 252 SD 253
>gi|71724847|gb|AAZ38885.1| 3' exoribonuclease [Xenopus laevis]
Length = 431
Score = 84.9 bits (208), Expect = 8e-15, Method: Composition-based stats.
Identities = 45/260 (17%), Positives = 84/260 (32%), Gaps = 30/260 (11%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
RL GRQ R I + G C+V+ G T +L + E P R G +
Sbjct: 23 RLDGRQTYDYRNIKIAFGTD---YGCCIVELGKTRVLCQVSCEIVTPKMSRP-TEGILFF 78
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSA--------LGSRQII 113
+ P + GRQ S ++ R++ R LR+ + QI
Sbjct: 79 NLEISPMAFPGFEM-----GRQSELSVKLNRLLERCLRNSKCIDTESLCVAAGEKVWQIR 133
Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMED----------CSNKFQLSQVLKGHVAA 163
+D ++ +G AA A L + + + +
Sbjct: 134 VDLHLLNHEGNIIDAASIAAIAGLCHFRRPDVSVQGEEVTVYTPEERDPVPLSIHHMPIC 193
Query: 164 ISCGMLCGYPIV--DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLN 221
+S + D + E+ +D M I +Q S ++
Sbjct: 194 VSFAFFQQGIYLLVDPNEREERVMDGLLVIAMNKHREICTIQSSGGIMLL-KEQVLRCSK 252
Query: 222 LAKDRIADLIKLQKDVISNE 241
+A ++ ++ +L + + N+
Sbjct: 253 VAGVKVGEITELIQKALEND 272
>gi|47213776|emb|CAF92665.1| unnamed protein product [Tetraodon nigroviridis]
Length = 379
Score = 84.9 bits (208), Expect = 8e-15, Method: Composition-based stats.
Identities = 47/258 (18%), Positives = 81/258 (31%), Gaps = 26/258 (10%)
Query: 2 RLSGRQENQMREISLTRRVSKYAE-GSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
RL GRQ R I ++ A+ G C V+ G+T ++ + E P R G +
Sbjct: 23 RLDGRQTYDYRRIRVSFG----ADYGCCFVELGETRVMAQVSCELVAPKESRP-NEGILF 77
Query: 61 AEYGMLPRSTGNRVKREAVS-----GRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115
+ P ++ RQ R + I VV + QI +D
Sbjct: 78 FNIELSPLASPAFEAGRQSELSVNLNRQLERCLRNSKCIDTESLCVVSGEKV--WQIRVD 135
Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLS------------QVLKGHVAA 163
++ DG AA A AL + + +
Sbjct: 136 VHMLNHDGNLMDAASIAAITALCHFRRPDVGIVGEEIKVFSPEERDPIPLSIYHMPISVS 195
Query: 164 ISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLA 223
S Y +VD E+ +D M I +Q S + +A
Sbjct: 196 FSFFQQGTYLLVDPCEREERVMDGLLMIAMNKHREICSIQSSGGIMLLKEQVM-RCSKIA 254
Query: 224 KDRIADLIKLQKDVISNE 241
+++++ +L + N+
Sbjct: 255 SVKVSEITELVSKALEND 272
>gi|313236011|emb|CBY11338.1| unnamed protein product [Oikopleura dioica]
Length = 271
Score = 84.9 bits (208), Expect = 8e-15, Method: Composition-based stats.
Identities = 41/247 (16%), Positives = 84/247 (34%), Gaps = 22/247 (8%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+R GR +++R + L + V+ A+ S +++ G+T ++ T E P +
Sbjct: 28 VRPDGRSLDELRPLVLAKNVAPTADSSAMIRLGNTKVICGITAETIKPAAATPKDGSFSV 87
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGS------RQIII 114
+ A +G +Q + + L+ V + + L + I
Sbjct: 88 N------FEFSSVCSPNAKAGPPNEVAQTMSIFLDGILKQVFETNQLCIEPDLLAWTLFI 141
Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVL---------KGHVAAIS 165
D ++ DG AA+ +L D + V K + +
Sbjct: 142 DVYCLEDDGNVTDAAMMSVISSLRDLKLPEITIDEETAKPVVNLEKQSPVDLKMFPVSTT 201
Query: 166 CGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKD 225
G G ++D E V ++ G ++ S + SQ+ A + +K
Sbjct: 202 YGEFSGILLLDPTARETELGSSPITVVCSEKGALLCFNRSG-GSPLSQEQVAAAIENSKR 260
Query: 226 RIADLIK 232
R + +
Sbjct: 261 RSSTIYD 267
>gi|226504202|ref|NP_001146469.1| hypothetical protein LOC100280057 [Zea mays]
gi|219887423|gb|ACL54086.1| unknown [Zea mays]
Length = 240
Score = 84.9 bits (208), Expect = 8e-15, Method: Composition-based stats.
Identities = 41/246 (16%), Positives = 76/246 (30%), Gaps = 23/246 (9%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R GR NQ+R + T A GS GDT +L + N + I
Sbjct: 7 RADGRNPNQLRPFTCTGNPLHRAHGSARWAQGDTVVLAAVYGPKSGTRKGENPEKASIEV 66
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
+ +G+ G + +E + + R L+S+ L+ + + V+
Sbjct: 67 V-------------WKPKTGQIGRQEREYEMTLKRTLQSICLLTVHPNTTTSVVLQVVGD 113
Query: 122 DGGTRTAAITGAWVALHDCLQHME------DCSNKFQLSQVLKGHVAAISCGMLCGYPIV 175
DG + AI + AL M+ C +L A + +
Sbjct: 114 DGSLMSCAINASCAALAFAGIPMKHLAVAISCGVMDNGVVILDTSRAEEQQARSFAHLVF 173
Query: 176 DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
+ D ++ G I + S+D +F + + + +
Sbjct: 174 PNSRKSVESKDTTQRDEESERGLITCI----THGAMSEDDYFNCIERGVMASSRISDFMR 229
Query: 236 DVISNE 241
+ E
Sbjct: 230 KTLQKE 235
>gi|67526709|ref|XP_661416.1| hypothetical protein AN3812.2 [Aspergillus nidulans FGSC A4]
gi|40740830|gb|EAA60020.1| hypothetical protein AN3812.2 [Aspergillus nidulans FGSC A4]
gi|259481631|tpe|CBF75330.1| TPA: exosome complex endonuclease 1/ribosomal RNA processing
protein, putative (AFU_orthologue; AFUA_2G03740)
[Aspergillus nidulans FGSC A4]
Length = 265
Score = 84.9 bits (208), Expect = 9e-15, Method: Composition-based stats.
Identities = 38/253 (15%), Positives = 76/253 (30%), Gaps = 20/253 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWI-----RNTK 55
+RL GR+ N++R + + + GS + G+T +L + + +
Sbjct: 14 LRLDGRRWNELRLLQAQISTNPASSGSSYLAMGNTTILCSVHGPAEGRRGDATGGSAGSS 73
Query: 56 HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115
+ + + ++ +R +R S RQ G I + A +S + I I
Sbjct: 74 GAVVEVDVNIAGFASVDRKRRAGGSDRQSG---RIASTLRSAFQSHLHTYLYPHSTISIH 130
Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIV 175
V+ +DG AA+ +AL D M +
Sbjct: 131 VSVLSSDGSVLAAAVNACTLALVDAGIPMPGLLCGCTAGMSGSASTPRDPMNDTLDPLLD 190
Query: 176 DLDYGEDSTIDVDANFVMT---------DSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226
E + D + + ++ + ML + D
Sbjct: 191 VSLPEEQELPFLTVATTSAPAVMTDGDEDDMKVSMLTMDSK---VHYSYIETMLAVGVDG 247
Query: 227 IADLIKLQKDVIS 239
+ ++ VI
Sbjct: 248 CKQVREILDSVIK 260
>gi|195341761|ref|XP_002037474.1| GM12087 [Drosophila sechellia]
gi|194131590|gb|EDW53633.1| GM12087 [Drosophila sechellia]
Length = 285
Score = 84.9 bits (208), Expect = 1e-14, Method: Composition-based stats.
Identities = 31/225 (13%), Positives = 68/225 (30%), Gaps = 18/225 (8%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRST 70
R ++ + ++++A G+ + + GDT ++ TA + K
Sbjct: 50 RNMTFSSGRLARFANGTAVCQMGDTAVMVTAVAKTKPNPGQGFMPLVVDYRLKNAASGRI 109
Query: 71 GNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAI 130
+ + R+I R+LR + Q++ + + A AI
Sbjct: 110 P--MNFMRRELGPSEKEILSARLIDRSLRPLFHKDYRTETQLVCNMLAMDAVHSPDVLAI 167
Query: 131 TGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDAN 190
A +A G + A+ G+ G +++ E T +D
Sbjct: 168 NAASMA-------------LSLSDIPWNGPIGAVRVGLCDGEVLINPTRRELQTSQLDLV 214
Query: 191 FVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
T +V ++ + Q + +I +
Sbjct: 215 VSATKQNLVVMLE--GKGNVVLQQDLLKAIKQGTREAQFIIHEIE 257
>gi|148236233|ref|NP_001086766.1| exosome component 7 [Xenopus laevis]
gi|50418038|gb|AAH77415.1| Exosc7-prov protein [Xenopus laevis]
Length = 291
Score = 84.9 bits (208), Expect = 1e-14, Method: Composition-based stats.
Identities = 34/258 (13%), Positives = 69/258 (26%), Gaps = 19/258 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+R GR R I + V GS VK G T +L E P + G++
Sbjct: 22 LRTDGRGCEDYRCIEVESDVVSNTTGSARVKIGHTDVLVGVKAEMGTPK-LERPGEGYLE 80
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRA---LRSVVDLSALGSRQIIIDCD 117
+ R + R+ L S+ + + +D
Sbjct: 81 FFVDCSANAAPEFEGRGGEELGTEIAFMLYKIFDNRSSIDLESLCIQAREHCWVLYVDVL 140
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDC-------SNKFQLSQVLKG-------HVAA 163
+++ G AL + +
Sbjct: 141 LLECGGNLFDTISVAVKAALFNARIPKVRVLEDEEGGKDFELSDDPYDCVRLNVVNVPCI 200
Query: 164 ISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLA 223
++ + +VD E++ +T G + ++ + + + F M+
Sbjct: 201 VTLSRIGHRHVVDATLQEEACSVASLLISVTSKGILTCMRKIGK-GSLDPESIFEMIETG 259
Query: 224 KDRIADLIKLQKDVISNE 241
K L + ++ E
Sbjct: 260 KHVAKSLHTSLQSALNQE 277
>gi|281343574|gb|EFB19158.1| hypothetical protein PANDA_000598 [Ailuropoda melanoleuca]
Length = 271
Score = 84.5 bits (207), Expect = 1e-14, Method: Composition-based stats.
Identities = 32/257 (12%), Positives = 69/257 (26%), Gaps = 18/257 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+R+ GR R + + V GS VK G T +L E P + G++
Sbjct: 3 LRVDGRGCEDYRYVEVETDVVSNTSGSARVKLGHTDILVGVKAEMGTPK-LEKPNEGYLE 61
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQI--IIDCDV 118
+T R + + ++ + +D +
Sbjct: 62 FFVDCSANATPEFEGRGGDDLGTEIANTLYRIFNKSSVDLKSLCISPREHCWILYVDVLL 121
Query: 119 IQADGGTRTAAITGAWVALHDCLQHMED-------CSNKFQLSQVLKGH-------VAAI 164
++ G AL + + +
Sbjct: 122 LECGGNLFDTICIAVKAALFNTRIPRVRVLEDEEGSKDIELSDDPYDCIRLSVENVPCIV 181
Query: 165 SCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAK 224
+ + +VD E++ +T +G + ++ + + + F M+ K
Sbjct: 182 TLCKIGYRHVVDATLQEEACSLASLLVSVTSTGVVTCMRKVGK-GSLDPESVFEMMETGK 240
Query: 225 DRIADLIKLQKDVISNE 241
L + V+ E
Sbjct: 241 RVGKVLHASLQSVLHKE 257
>gi|326508906|dbj|BAJ86846.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 306
Score = 84.5 bits (207), Expect = 1e-14, Method: Composition-based stats.
Identities = 49/262 (18%), Positives = 87/262 (33%), Gaps = 25/262 (9%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+R R+ + R ++ A GS LV+ GDT +L + LE P G +
Sbjct: 39 VRPDARRLAEARPTTVALGAVSSAHGSALVRLGDTAMLASIKLEVMSPPA-ETPDQGSVA 97
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGS---RQIIIDCD 117
E+ M P + ++ + ++ +L + +D
Sbjct: 98 VEFHMPPICSPLVRPGRPAEAAPVISKALEDVLMSSGMLNLKELCLISGKASWVAYLDVY 157
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGH----------------- 160
+ ADG AA+ A + + ++ V
Sbjct: 158 CLNADGSLFDAALISVVAAFTHLEIPLVSVGDDGRVFTVGGNEGKTKYELVNREKRKLTL 217
Query: 161 ---VAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFF 217
++C + +VD E+S I+ V+ SG +V +Q T S
Sbjct: 218 GDIPFPLTCALHKDSILVDPTAEEESIIETSVTVVLDSSGRLVSIQKPGGGVT-SMAAIK 276
Query: 218 AMLNLAKDRIADLIKLQKDVIS 239
A + LAK+R L ++ D I
Sbjct: 277 ACIGLAKERGQKLKEILTDSIE 298
>gi|297671539|ref|XP_002813914.1| PREDICTED: exosome complex exonuclease RRP42-like [Pongo abelii]
Length = 576
Score = 84.5 bits (207), Expect = 1e-14, Method: Composition-based stats.
Identities = 34/258 (13%), Positives = 73/258 (28%), Gaps = 19/258 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+R+ GR R + + V GS VK G T +L E P + G++
Sbjct: 22 LRVDGRGCEDYRCVEVETDVVSNTSGSARVKLGHTDILVGVKAEMGTPK-LEKPNEGYLE 80
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRA---LRSVVDLSALGSRQIIIDCD 117
+T R + + ++ L+++ + +D
Sbjct: 81 FFVDCSASATPEFEGRGGDDLGTEIANTLYRIFNNKSSVDLKTLCISPREHCWILYVDVL 140
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMED-------CSNKFQLSQVLKG-------HVAA 163
+++ G A AL + +
Sbjct: 141 LLECGGNLFDAISIAVKAALFNTRIPRVRVLEDEEGSKDIELSDDPYDCIRLSVENIPCI 200
Query: 164 ISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLA 223
++ + +VD E++ +T G + ++ + + + F M+
Sbjct: 201 VTLCKIGYRHVVDATLQEEACSLASLLVSVTSKGVVTCMRKVGK-GSLDPESIFEMMETG 259
Query: 224 KDRIADLIKLQKDVISNE 241
K L + V+ E
Sbjct: 260 KRVGKVLHASLQSVLHKE 277
>gi|114649399|ref|XP_001147508.1| PREDICTED: exosome component 8 isoform 3 [Pan troglodytes]
gi|114649401|ref|XP_001147275.1| PREDICTED: exosome component 8 isoform 1 [Pan troglodytes]
Length = 246
Score = 84.5 bits (207), Expect = 1e-14, Method: Composition-based stats.
Identities = 36/223 (16%), Positives = 63/223 (28%), Gaps = 14/223 (6%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R GR+ + R ++ A+GS LVK G+T ++ E P G++
Sbjct: 23 RPDGRELGEFRTTTVNIGSISTADGSALVKLGNTTVICGVKAEFAAPPT-DAPDKGYVVP 81
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGS---RQIIIDCDV 118
+ P + Q + + DL + D
Sbjct: 82 NVDLPPLCSSRFRSGPPGEEAQVASQFIADVIENSQIIQKEDLCISPGKLVWVLYCDLIC 141
Query: 119 IQADGGTRTAAITGAWVALHDCLQHME---------DCSNKFQLSQVLKGHVAAISCGML 169
+ DG A AL + + + K + ++ H A S +
Sbjct: 142 LDYDGNILDACTFALLAALKNVQLPEVTINEETALAEVNLKKKSYLNIRTHPVATSFAVF 201
Query: 170 CGY-PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATF 211
IVD E+ VM + G + +
Sbjct: 202 DDTLLIVDPTGEEEHLATGTLTIVMDEEGKLCCLHKPGMFPPL 244
>gi|213423016|ref|ZP_03356034.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Typhi str. E01-6750]
Length = 233
Score = 84.5 bits (207), Expect = 1e-14, Method: Composition-based stats.
Identities = 22/92 (23%), Positives = 37/92 (40%), Gaps = 4/92 (4%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR+++ +R + + V GS L G+T L TATL + +V + +
Sbjct: 137 RIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVLDELMGERTD 196
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQE 89
Y P S G + R+ G +
Sbjct: 197 SFLFHYNFPPYSVGETGMVGSPKRREIGHGRL 228
>gi|242097164|ref|XP_002439072.1| hypothetical protein SORBIDRAFT_10g031070 [Sorghum bicolor]
gi|241917295|gb|EER90439.1| hypothetical protein SORBIDRAFT_10g031070 [Sorghum bicolor]
Length = 286
Score = 84.1 bits (206), Expect = 1e-14, Method: Composition-based stats.
Identities = 47/257 (18%), Positives = 84/257 (32%), Gaps = 24/257 (9%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+R GR+ Q R +S+ V A GS V+ G T ++ + E P + G ++
Sbjct: 20 LRTDGRRRLQFRALSVQTGVIPQANGSARVRLGATEIIASVKAELGKPSILHP-DKGKVS 78
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRA--------LRSVVDLSALGSRQI 112
P + R + + ++G L S++ + +
Sbjct: 79 IFVDCSPTAEPMFEGRGSEELSAELSVSLQRCLLGGKSGAGAAIDLSSLIVVEGKVCWDL 138
Query: 113 IIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGH------------ 160
ID V+ +DG A VAL D + S + +
Sbjct: 139 YIDGLVVSSDGNLLDALAAAIKVALSDTGIPKVNVSVNAASDEEPEVDVSDEEFLQFDTS 198
Query: 161 --VAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFA 218
I+ + + IVD E+S + + + +G I + A F
Sbjct: 199 SVPVIITLTKVGRHYIVDATSEEESQMSSAVSVSVNRNGQICGLTKRG-GAGLDPSVIFD 257
Query: 219 MLNLAKDRIADLIKLQK 235
M+++AK I L
Sbjct: 258 MISVAKHVSQQFISLLD 274
>gi|473949|dbj|BAA06226.1| KIAA0116 [Homo sapiens]
Length = 290
Score = 84.1 bits (206), Expect = 1e-14, Method: Composition-based stats.
Identities = 34/258 (13%), Positives = 73/258 (28%), Gaps = 19/258 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+R+ GR R + + V GS VK G T +L E P + G++
Sbjct: 21 LRVDGRGCEDYRCVEVETDVVSNTSGSARVKLGHTDILVGVKAEMGTPK-LEKPNEGYLE 79
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRA---LRSVVDLSALGSRQIIIDCD 117
+T R + + ++ L+++ + +D
Sbjct: 80 FFVDCSASATPEFEGRGGDDLGTEIANTLYRIFNNKSSVDLKTLCISPREHCWVLYVDVL 139
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMED-------CSNKFQLSQVLKGH-------VAA 163
+++ G A AL + +
Sbjct: 140 LLECGGNLFDAISIAVKAALFNTRIPRVRVLEDEEGSKDIELSDDPYDCIRLSVENVPCI 199
Query: 164 ISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLA 223
++ + +VD E++ +T G + ++ + + + F M+
Sbjct: 200 VTLCKIGYRHVVDATLQEEACSLASLLVSVTSKGVVTCMRKVGK-GSLDPESIFEMMETG 258
Query: 224 KDRIADLIKLQKDVISNE 241
K L + V+ E
Sbjct: 259 KRVGKVLHASLQSVLHKE 276
>gi|224089018|ref|XP_002308603.1| predicted protein [Populus trichocarpa]
gi|222854579|gb|EEE92126.1| predicted protein [Populus trichocarpa]
Length = 243
Score = 84.1 bits (206), Expect = 1e-14, Method: Composition-based stats.
Identities = 38/245 (15%), Positives = 70/245 (28%), Gaps = 30/245 (12%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R GR +Q+R +S + V A GS GDT + + N + +
Sbjct: 5 RDDGRSPSQLRPLSCSHNVLHRAHGSASWSQGDTKVSAAVYGPKAGTKKNENPEKACVEV 64
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
+ +G+ G +E + ++ R L+S+ L+ + I +
Sbjct: 65 I-------------WKPKTGQIGKLEREYEMILKRTLQSICILTLNPNTTTSIIVQFVND 111
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
DG AI A AL D M+ + V + +
Sbjct: 112 DGALLVCAINAACAALVDARIPMK---HLAVAICCCLADVGYVILDPTKLEEQKMKGFAY 168
Query: 182 DSTIDVDANF----------VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231
+ + T+ G I V + + + + A L
Sbjct: 169 LVFPNSVLSVLLEGSSLVEGESTEHGIITSV----THGVMPVEEYLKCVERGRAASAKLS 224
Query: 232 KLQKD 236
+
Sbjct: 225 DFLRK 229
>gi|224049203|ref|XP_002187964.1| PREDICTED: exosome component 9 [Taeniopygia guttata]
Length = 434
Score = 84.1 bits (206), Expect = 1e-14, Method: Composition-based stats.
Identities = 46/258 (17%), Positives = 79/258 (30%), Gaps = 24/258 (9%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MRL GRQ R I ++ + G C+V+ G T +L + E VP G +
Sbjct: 16 MRLDGRQCYDYRNIRVSFGADR---GCCMVELGRTRVLAQVSCEL-VPPKPSRPTEGVLF 71
Query: 61 AEYGMLPRSTGNRVKREAVS-----GRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115
+ P + R R + I VV + QI +D
Sbjct: 72 FNLELSPMAAPGLEPGRQSELVVSLNRLLERCLRDSKCIETESLCVVAGEKV--WQIRLD 129
Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKF----------QLSQVLKGHVAAIS 165
++ DG AA VAL + + + + +S
Sbjct: 130 MHLLNHDGNITDAASIAGIVALCHFRRPDVSVQGEEVTVYTAEERDPVPLSIHHMPICVS 189
Query: 166 CGMLCGYPIV--DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLA 223
+ D E+ +D M I +Q S D +
Sbjct: 190 FAFFHQGTYLLVDPTEREERVMDGLLVIAMNKHHEICTIQSSGVVMLLP-DQILRCSKIT 248
Query: 224 KDRIADLIKLQKDVISNE 241
++A++ +L + + N+
Sbjct: 249 AVKVAEITELIQKALEND 266
>gi|325187967|emb|CCA22510.1| exosome complex exonuclease RRP42like protein putati [Albugo
laibachii Nc14]
Length = 298
Score = 84.1 bits (206), Expect = 1e-14, Method: Composition-based stats.
Identities = 40/258 (15%), Positives = 73/258 (28%), Gaps = 20/258 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGD--THLLTTATLEEKVPM---WIRNTK 55
+R GR R + L + ++ GS VK + T +L + LE P
Sbjct: 19 VRADGRSRTSHRNVMLETSLLPHSNGSARVKQQNFGTDVLASVKLEVLSPSLEAPNSGVL 78
Query: 56 HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115
+ +T + + T R E + L + + I +D
Sbjct: 79 NVNVTCFPSISSKITNGRALDEINIELSQLMQRIFTSHKSIDLNKFCIVPSQFVWGIFVD 138
Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDC--SNKFQLSQVLKGHVAA---------- 163
V ++ G + AL L + ++ AA
Sbjct: 139 VVVYESTGSLPDLISIAMYAALKKTLFPCVRMLGVEGDEKILQVERDPAAGEYLAATVCF 198
Query: 164 ---ISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAML 220
+ + Y ++D E+ + + G I +Q S D M
Sbjct: 199 PLCTTICKIGNYSVMDPTLEEELCVSTQNVVALNREGSICGIQKRYGDGAISMDELQDMT 258
Query: 221 NLAKDRIADLIKLQKDVI 238
+ A + L + I
Sbjct: 259 DQACEHTMALFQRIDKAI 276
>gi|6648187|gb|AAF21185.1|AC013483_9 putative 3' exoribonuclease [Arabidopsis thaliana]
Length = 293
Score = 84.1 bits (206), Expect = 1e-14, Method: Composition-based stats.
Identities = 46/268 (17%), Positives = 84/268 (31%), Gaps = 31/268 (11%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+R GR+ R I + V A GS V+ G T ++ + E P ++ G +
Sbjct: 19 LRTDGRKRLTYRPIYVETGVIPQANGSARVRIGGTDVIASVKAEIGRPSSLQP-DKGKVA 77
Query: 61 AEYGMLPRSTGNRVKREAVS---------------GRQGGRSQEIQRMIGRALRSVVDLS 105
P + R G+ G + G L S++
Sbjct: 78 VFIDCSPTAEPTFGGRGGEELSSELALALQRCLLGGKSGAAIHVLVPGAGINLSSLLIKE 137
Query: 106 ALGSRQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGH----- 160
+ ID VI +DG A AL + + S + + +
Sbjct: 138 GKVCWDLYIDGLVISSDGNLLDALGAAIKAALTNTAIPKVNVSAEVADDEQPEIDISDEE 197
Query: 161 ---------VAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATF 211
++ + + IVD E+S + + + +GHI + + +
Sbjct: 198 YLQFDTSSVPVIVTLTKVGTHYIVDATAEEESQMSSAVSISVNRTGHICGLTKRS-GSGL 256
Query: 212 SQDHFFAMLNLAKDRIADLIKLQKDVIS 239
M+++AK L+ IS
Sbjct: 257 DPSVILDMISVAKHVTETLMSKLDSEIS 284
>gi|226494746|ref|NP_001148711.1| exosome complex exonuclease RRP43 [Zea mays]
gi|195621578|gb|ACG32619.1| exosome complex exonuclease RRP43 [Zea mays]
Length = 306
Score = 84.1 bits (206), Expect = 1e-14, Method: Composition-based stats.
Identities = 51/262 (19%), Positives = 87/262 (33%), Gaps = 25/262 (9%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+R+ R+ + R ++ A GS LV+ GDT +L + LE P G ++
Sbjct: 39 VRIDARRLREARTTTVALGAVSSAHGSALVRVGDTAMLASVKLEVMSPSA-EYPDEGSVS 97
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQR-MIGRALRSVVDLSALGS--RQIIIDCD 117
E+ M P + + M R L G +D
Sbjct: 98 VEFHMPPICSPLVRPGRSAEVAPVISKALEDVLMSSRMLNLKDLCLITGKASWLAYLDIY 157
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGH----------------- 160
+ ADG AA+ A A + + +L V
Sbjct: 158 CLNADGSLFDAALISAVSAFTHLEIPLVSVGDDGKLFTVGGNDGKNKFELVNREKRKLTL 217
Query: 161 ---VAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFF 217
+++C + G + D E+S I+ V+ S +V +Q T S
Sbjct: 218 GDIPLSLTCALHKGCILTDPTSEEESIIETYVTVVVDSSDRLVSLQKVGGTVT-SMATIK 276
Query: 218 AMLNLAKDRIADLIKLQKDVIS 239
++LAK+R L ++ D +
Sbjct: 277 ECISLAKERRLRLREILIDSVK 298
>gi|212543511|ref|XP_002151910.1| exosome complex endonuclease 1/ribosomal RNA processing protein,
putative [Penicillium marneffei ATCC 18224]
gi|210066817|gb|EEA20910.1| exosome complex endonuclease 1/ribosomal RNA processing protein,
putative [Penicillium marneffei ATCC 18224]
Length = 283
Score = 84.1 bits (206), Expect = 2e-14, Method: Composition-based stats.
Identities = 40/252 (15%), Positives = 82/252 (32%), Gaps = 16/252 (6%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+RL GR+ N++R + + + GS + G+T ++ T + + +
Sbjct: 14 LRLDGRRWNELRLLQAQISTNPASSGSSYLSMGNTSIMCTVHGPHETSGAGSSATEAVVD 73
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
+ + + +R +R S RQ ++ + A +S + S I + V+
Sbjct: 74 VDVNIAGFAGVDRKRRAGGSDRQS---TQLSTALKSAFQSHLHTSLYPHSTITVQVSVLS 130
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLK----GHVAAISCGMLCGYPIVD 176
+DG AAI +AL D M +A S L +
Sbjct: 131 SDGSLFAAAINACTLALVDAGIPMPGLLCGCTAGVSGSASTPRDPSASSEESLDPLLDLS 190
Query: 177 LDYGEDSTIDVDAN---FVMTDSGHIVEVQGSAERATFSQDH------FFAMLNLAKDRI 227
L ++ + + + + + AML + D
Sbjct: 191 LPEEQELPFITIGTTTPLPAASAAAAEDDVDDMKVSVLHMETRAHTSYLDAMLAVGIDGC 250
Query: 228 ADLIKLQKDVIS 239
+ ++ + VI
Sbjct: 251 KQIREILEGVIK 262
>gi|301754007|ref|XP_002912799.1| PREDICTED: LOW QUALITY PROTEIN: exosome complex exonuclease
RRP42-like [Ailuropoda melanoleuca]
Length = 459
Score = 84.1 bits (206), Expect = 2e-14, Method: Composition-based stats.
Identities = 32/257 (12%), Positives = 69/257 (26%), Gaps = 18/257 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+R+ GR R + + V GS VK G T +L E P + G++
Sbjct: 22 LRVDGRGCEDYRYVEVETDVVSNTSGSARVKLGHTDILVGVKAEMGTPK-LEKPNEGYLE 80
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQI--IIDCDV 118
+T R + + ++ + +D +
Sbjct: 81 FFVDCSANATPEFEGRGGDDLGTEIANTLYRIFNKSSVDLKSLCISPREHCWILYVDVLL 140
Query: 119 IQADGGTRTAAITGAWVALHDCLQHMED-------CSNKFQLSQVLKGH-------VAAI 164
++ G AL + + +
Sbjct: 141 LECGGNLFDTICIAVKAALFNTRIPRVRVLEDEEGSKDIELSDDPYDCIRLSVENVPCIV 200
Query: 165 SCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAK 224
+ + +VD E++ +T +G + ++ + + + F M+ K
Sbjct: 201 TLCKIGYRHVVDATLQEEACSLASLLVSVTSTGVVTCMRKVGK-GSLDPESVFEMMETGK 259
Query: 225 DRIADLIKLQKDVISNE 241
L + V+ E
Sbjct: 260 RVGKVLHASLQSVLHKE 276
>gi|66529825|ref|XP_624000.1| PREDICTED: exosome complex exonuclease RRP43-like [Apis mellifera]
Length = 281
Score = 84.1 bits (206), Expect = 2e-14, Method: Composition-based stats.
Identities = 37/251 (14%), Positives = 80/251 (31%), Gaps = 14/251 (5%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+R GRQ R IS+ +A+ S + K G+T ++ E VP + + G+I
Sbjct: 22 VRPDGRQFLSFRPISVNISSITHADSSAIFKIGNTTIVCGIKSELAVPKA-ESPECGYIV 80
Query: 61 AEYGMLPRSTGNRVKREAVSGRQ-GGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119
+ P + Q + E A+ G ++ CD++
Sbjct: 81 PNIELPPLCSPKFRPGPPSDQAQVITKLVENILRNSAAIDLKELCVYKGKLVWVLYCDLV 140
Query: 120 QADGGTRTAAIT-----------GAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGM 168
+ ++ ++ ++ +K +I+ +
Sbjct: 141 CINYDGSIIDACIGALTATLNTLTLPEIFYNVETGHVSINSTKRIRFPIKALPVSITFAI 200
Query: 169 LCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIA 228
++ ++ ++ + ++ + I + SQD F L +K R
Sbjct: 201 FDNQLLIADPTDDEESLCLGKLTIVMNEEKICCIHKPG-GIPISQDIFLKSLIKSKKRAE 259
Query: 229 DLIKLQKDVIS 239
+ L IS
Sbjct: 260 LVRSLIDSAIS 270
>gi|156537299|ref|XP_001606070.1| PREDICTED: similar to exosomal 3-5 exoribonuclease complex subunit
Rrp41-like protein [Nasonia vitripennis]
Length = 284
Score = 83.7 bits (205), Expect = 2e-14, Method: Composition-based stats.
Identities = 39/237 (16%), Positives = 81/237 (34%), Gaps = 9/237 (3%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R+ R+ ++R++ + V A+GS ++ G T ++ +A ++P + G I
Sbjct: 39 RVDSRKHKELRKMFIKLGVVSQAKGSAYIEMGQTKVICSAFDPREIPNKTSYSTQGEIFC 98
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
E+ +T R + Q +E ++ RAL V + Q+ + V+
Sbjct: 99 EFKFASFATCKRKGHQ-----QDTEEKEYSLIMQRALEPAVCRHEFPNFQVDVYALVLDN 153
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
G AAI GA +AL + M + + V +
Sbjct: 154 GGSALGAAIMGASLALANASVPMFGIVTAVTAGIYDDLLLLDPTDKEEALCLSV-AKQKK 212
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
+ + ++ I E + D + L +D+ + + +
Sbjct: 213 LTNHGIIMQAMLLQHDQISEFFL---VGSMDVDCVNNSMELLSKTCSDVHPILQQSL 266
>gi|45185722|ref|NP_983438.1| ACR035Wp [Ashbya gossypii ATCC 10895]
gi|44981477|gb|AAS51262.1| ACR035Wp [Ashbya gossypii ATCC 10895]
Length = 246
Score = 83.7 bits (205), Expect = 2e-14, Method: Composition-based stats.
Identities = 41/243 (16%), Positives = 83/243 (34%), Gaps = 21/243 (8%)
Query: 1 MRLSGRQENQMREISLTRRVSKY-AEGSCLVKFGDTHLLTTATLEEKVPMWIR-NTKHGW 58
+RL GR+ N++R + A+GS ++ G+ L+T T + + + N
Sbjct: 12 LRLDGRRWNELRRFECSINTHPTAADGSSYLEQGNNKLITLVTGPHEPALRSQVNPSKAT 71
Query: 59 ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDV 118
+T M + R K + R R E+Q + R V L I + V
Sbjct: 72 LTVTVNMTKFAAAERSKTGHKNER---RILEMQTALVRTFEKNVMLQLYPRTAIDVQVHV 128
Query: 119 IQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLD 178
+Q DGG + I G +AL D M + + + + ++
Sbjct: 129 LQNDGGVLGSMINGITLALIDAGIAMYEYISGISVGLYDTTPL-----------LDLNRL 177
Query: 179 YGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
+ + ++ ++ V+ D ++++L + + V+
Sbjct: 178 EEQAMSCFTLGVVGKSEKLSLLLVE-----DKVPLDRLESVMSLGIAGTHRVRDMMDKVL 232
Query: 239 SNE 241
Sbjct: 233 RQH 235
>gi|15215485|gb|AAH12831.1| Exosome component 7 [Homo sapiens]
gi|168272912|dbj|BAG10295.1| exosome complex exonuclease RRP42 [synthetic construct]
Length = 291
Score = 83.7 bits (205), Expect = 2e-14, Method: Composition-based stats.
Identities = 34/258 (13%), Positives = 73/258 (28%), Gaps = 19/258 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+R+ GR R + + V GS VK G T +L E P + G++
Sbjct: 22 LRVDGRGCEDYRCVEVETDVVSNTSGSARVKLGHTDILVGVKAEMGTPK-LEKPNEGYLE 80
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRA---LRSVVDLSALGSRQIIIDCD 117
+T R + + ++ L+++ + +D
Sbjct: 81 FFVDCSASATPEFEGRGGDDLGTEIANTLYRIFNNKSSVDLKTLCISPREHCWVLYVDVL 140
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMED-------CSNKFQLSQVLKGH-------VAA 163
+++ G A AL + +
Sbjct: 141 LLECGGNLFDAISIAVKAALFNTRIPRVRVLEDEEGSKDIELSDDPYDCIRLSVENVPCI 200
Query: 164 ISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLA 223
++ + +VD E++ +T G + ++ + + + F M+
Sbjct: 201 VTLCKIGYRHVVDATLQEEACSLASLLVSVTSKGVVTCMRKVGK-GSLDPESIFEMMETG 259
Query: 224 KDRIADLIKLQKDVISNE 241
K L + V+ E
Sbjct: 260 KRVGKVLHASLQSVLHKE 277
>gi|255082324|ref|XP_002504148.1| predicted protein [Micromonas sp. RCC299]
gi|226519416|gb|ACO65406.1| predicted protein [Micromonas sp. RCC299]
Length = 261
Score = 83.7 bits (205), Expect = 2e-14, Method: Composition-based stats.
Identities = 57/243 (23%), Positives = 94/243 (38%), Gaps = 22/243 (9%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW-IRNTKHGWI 59
+RL GR+ + R + ++GS + + G+T +L + R +
Sbjct: 9 LRLDGRRPKETRRMRCELTALPGSDGSAVFELGNTKVLAAVHGPHECRRPSERLEDRLLV 68
Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119
E M STG R +R R+ E+ + R + + V L Q+ + V+
Sbjct: 69 KCEVSMAAFSTGERRRRTKGDR----RTNELSTFVRRCIETCVSAELLARSQLDVSIQVL 124
Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179
QADGG R AA+ A +A+ D M+D A S G L P++DL+Y
Sbjct: 125 QADGGVRAAAVNAAVLAIVDAGIPMQDTM-------------ACCSAGYLDDTPLLDLNY 171
Query: 180 GEDSTIDVDANF-VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
E+ + + M +V + + S D F LA D KL ++ +
Sbjct: 172 MEEGGGGPEVHVAYMPQMDRVVAIVTENKA---SVDVFERAHELALDGCRVASKLMRERM 228
Query: 239 SNE 241
Sbjct: 229 IEH 231
>gi|187607878|ref|NP_001120226.1| exosome component 9 [Xenopus (Silurana) tropicalis]
gi|169642591|gb|AAI60389.1| LOC100145275 protein [Xenopus (Silurana) tropicalis]
Length = 406
Score = 83.7 bits (205), Expect = 2e-14, Method: Composition-based stats.
Identities = 42/257 (16%), Positives = 77/257 (29%), Gaps = 24/257 (9%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
RL GRQ R I +T G C+V+ G T +L + E P R G +
Sbjct: 23 RLDGRQTYDYRNIKITFGTD---YGCCIVELGKTRVLCQVSSEIVTPKMNRP-TEGILFF 78
Query: 62 EYGMLPRSTGNRVKREAVS-----GRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
+ + P + R R + I V + QI +D
Sbjct: 79 DLAISPMAFPGFEMGRNSELSVKLNRLLERCLRNSKCIDTESLCVAAGEKV--WQIRVDL 136
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMED----------CSNKFQLSQVLKGHVAAISC 166
++ +G AA A L + + + + +S
Sbjct: 137 HLLNHEGNIIDAASIAAIAGLCHFRRPDVSVQGEEVTVYTPEERDPVPLSIHHMPICVSF 196
Query: 167 GMLCGYPIV--DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAK 224
+ D E+ +D M I +Q S ++ +A
Sbjct: 197 AFFQQGIYLLVDPSEREEWVMDGLLVISMNKHREICTIQSSGGIMLL-KEQVLRCSKVAG 255
Query: 225 DRIADLIKLQKDVISNE 241
++ ++ +L + + N+
Sbjct: 256 VKVGEITELIQKALEND 272
>gi|115485229|ref|NP_001067758.1| Os11g0311300 [Oryza sativa Japonica Group]
gi|113644980|dbj|BAF28121.1| Os11g0311300 [Oryza sativa Japonica Group]
Length = 300
Score = 83.7 bits (205), Expect = 2e-14, Method: Composition-based stats.
Identities = 48/257 (18%), Positives = 85/257 (33%), Gaps = 25/257 (9%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+R R+ + R ++ A GS LV+ GDT +L + LE P G I
Sbjct: 33 VRPDARRPAEARPTTVALAAVSSAHGSALVRLGDTAMLASIKLEVMSPSG-EAPDEGSIA 91
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGS---RQIIIDCD 117
E+ M P + ++ + ++ +L + +D
Sbjct: 92 VEFHMPPICSPLVRPGRPAEVAPVISKNLEDILMSSGMLNLKELCLISGKASWLAYLDVY 151
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCS--------------------NKFQLSQVL 157
+ ADG AA+ A A + N+ + +
Sbjct: 152 CLNADGSLFDAALISAVAAFTHLEIPLVSVGDDGRVFTVGGNEGKAKYELVNREKRKLTI 211
Query: 158 KGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFF 217
+++C + + D E+S I+ V+ S IV +Q T S
Sbjct: 212 TNVPFSLTCALHKDNVLADPTAEEESIIETSVTIVLDSSDQIVSIQKPGGAVT-SMTTIK 270
Query: 218 AMLNLAKDRIADLIKLQ 234
++LAKDR L ++
Sbjct: 271 ECISLAKDRRRKLREIL 287
>gi|325189047|emb|CCA23575.1| exosome complex exonuclease RRP41like protein putati [Albugo
laibachii Nc14]
Length = 261
Score = 83.7 bits (205), Expect = 2e-14, Method: Composition-based stats.
Identities = 46/247 (18%), Positives = 90/247 (36%), Gaps = 26/247 (10%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHG--- 57
+RL GR+E + R + V A+GS ++ G+T +L +V G
Sbjct: 18 LRLDGRREAETRRVRARLGVFHRADGSAYIEQGNTKVLVVVYGPREVDGTTLKNAKGAAS 77
Query: 58 -----WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQI 112
+ E +T +R S R ++ E+ I + S + + QI
Sbjct: 78 LVKKAIVHCECTQASFATSDRKVSRNASDR---KNVEMSSAIKQIFESCIFTNLYPQSQI 134
Query: 113 IIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY 172
I V+QADGG A+I +AL D + D VA+ + +
Sbjct: 135 SIYPQVLQADGGELAASINATSLALMDAGIALNDFV------------VASTAGFVQQKS 182
Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
+ + + + S H+ ++ A+ + + F +++ +A + +
Sbjct: 183 LCDLNAFEQAARGPQITVAINPRSRHVNYLKMEAK---LALEVFESVMGMAINGCDRIGD 239
Query: 233 LQKDVIS 239
+ V+
Sbjct: 240 SLQQVVR 246
>gi|73985825|ref|XP_533858.2| PREDICTED: similar to Exosome complex exonuclease RRP42 (Ribosomal
RNA processing protein 42) (Exosome component 7) (p8)
isoform 1 [Canis familiaris]
Length = 291
Score = 83.7 bits (205), Expect = 2e-14, Method: Composition-based stats.
Identities = 34/258 (13%), Positives = 72/258 (27%), Gaps = 19/258 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+R+ GR R + + V GS VK G T +L E P + G++
Sbjct: 22 LRVDGRGCEDYRCVEVETDVVSNTSGSARVKLGHTDILVGVKAEMGTPK-LEKPNEGYLE 80
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRA---LRSVVDLSALGSRQIIIDCD 117
+T R + + ++ L+S+ + +D
Sbjct: 81 FFVDCSANATPEFEGRGGDDLGTEIANTLYRIFNNKSSIDLKSLCISPREHCWILYVDVL 140
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMED-------CSNKFQLSQVLKGH-------VAA 163
+++ G AL + +
Sbjct: 141 LLECGGNLFDTICIAVKAALFNTRIPRVRVLEDEEGSKDIELSDDPYDCFRLSVENVPCI 200
Query: 164 ISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLA 223
++ + +VD E++ +T G + ++ + + + F M+
Sbjct: 201 VTLCKIGYRHVVDATLQEEACSLASLLVSVTSKGVVTCMRKVGK-GSLDPESIFEMMETG 259
Query: 224 KDRIADLIKLQKDVISNE 241
K L + V+ E
Sbjct: 260 KRVGKVLHASLQSVLHKE 277
>gi|212721556|ref|NP_001131768.1| hypothetical protein LOC100193137 [Zea mays]
gi|194692484|gb|ACF80326.1| unknown [Zea mays]
gi|195623954|gb|ACG33807.1| exosome complex exonuclease RRP43 [Zea mays]
Length = 306
Score = 83.7 bits (205), Expect = 2e-14, Method: Composition-based stats.
Identities = 47/262 (17%), Positives = 85/262 (32%), Gaps = 25/262 (9%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+R+ R+ + R ++ A GS L + GDT +L + LE P G +
Sbjct: 39 VRIDARRLREARPTTVALGAVSSAHGSALARLGDTAMLASVKLEVMSPPAEHP-DEGSVA 97
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGS---RQIIIDCD 117
E+ M P + + + ++ DL + +D
Sbjct: 98 VEFHMPPICSPLVRPGRPTDVAPVISKALEDVLTSSGMLNLKDLCLITGKASWLAYLDIY 157
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGH----------------- 160
+ ADG AA+ A A + + +L V
Sbjct: 158 CLNADGSLFDAALISAVAAFTHLEIPLVSVGDDGRLFTVGGNDGKNKFELVNREKRKLTL 217
Query: 161 ---VAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFF 217
+++C + + D E+S I+ V+ S +V +Q T
Sbjct: 218 GAIPLSLTCALHKDEILADPTSEEESIIETYVTVVVDSSDRLVSLQKLGGAVTC-MATIK 276
Query: 218 AMLNLAKDRIADLIKLQKDVIS 239
++LAK+R L ++ D I
Sbjct: 277 ECISLAKERRRSLREILLDSIK 298
>gi|198401795|gb|ACH87550.1| exosome component 9 [Platynereis dumerilii]
Length = 530
Score = 83.7 bits (205), Expect = 2e-14, Method: Composition-based stats.
Identities = 43/261 (16%), Positives = 88/261 (33%), Gaps = 30/261 (11%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MRL GR R I + + + G C V G T ++ + E P R + G +
Sbjct: 117 MRLDGRGCYDYRRIKIQFGIDR---GCCQVHLGKTIVMAQTSCEVTTPKQTRPS-EGNVF 172
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSV--------VDLSALGSRQI 112
+ P + + +GRQ E+ R++ R ++ +S + I
Sbjct: 173 VNVELSPMAAPHF-----EAGRQSDAGVELTRILERCIKESRCVDTESLCIMSGVKVWTI 227
Query: 113 IIDCDVIQADGGTRTAAITGAWVALHDCLQHM----------EDCSNKFQLSQVLKGHVA 162
+D V+ +G AA A +L + ++ + +
Sbjct: 228 RVDVHVLNHNGNLIDAASIAAISSLVHFRRPDVSVSGEDVTIHSLEDRDPIPLSVHHMPI 287
Query: 163 AISCGMLCGYPIV--DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAML 220
++C + D E++ +D M I Q + ++
Sbjct: 288 CVTCAFYHKGTYLLIDPTDKEENVMDGKVIVGMNKHREICTFQLTGSMLLL-KEQVLRCS 346
Query: 221 NLAKDRIADLIKLQKDVISNE 241
N+A ++ ++ L + + N+
Sbjct: 347 NMAVVKVGEMTALIEQALQND 367
>gi|67471870|ref|XP_651847.1| 3' exoribonuclease family protein [Entamoeba histolytica HM-1:IMSS]
gi|56468626|gb|EAL46457.1| 3' exoribonuclease family protein [Entamoeba histolytica HM-1:IMSS]
Length = 238
Score = 83.7 bits (205), Expect = 2e-14, Method: Composition-based stats.
Identities = 40/239 (16%), Positives = 77/239 (32%), Gaps = 21/239 (8%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
RL GR+ +MR+ + A+GS V+ G+T + + RN + +
Sbjct: 10 RLDGRRTTEMRKCEMEINFLSTADGSARVRMGNTIVEAVVFGPLEGRR--RNREGAELMV 67
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
Y +T R ++ E ++ + ++ L I + V+Q
Sbjct: 68 SYSQATFATRKRREQMHDR-----TMIETAELLKQMYEQIIITKLLPETMIDLRVQVMQD 122
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
DG A I +AL D M D + + V ++
Sbjct: 123 DGSVTAAVINACTLALIDAGIPMIDIVAAAEGGYIDGKMVVDMNKDE-----------EN 171
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
T+ +M SG + +Q + +L++ ++ + K I
Sbjct: 172 VGTVFNVHTAIMQKSGAVALLQTEGK---MPLQRLGDLLSIVEEGAKTIGIEMKKRIRE 227
>gi|320591734|gb|EFX04173.1| exosome complex exonuclease rrp41 [Grosmannia clavigera kw1407]
Length = 511
Score = 83.7 bits (205), Expect = 2e-14, Method: Composition-based stats.
Identities = 47/251 (18%), Positives = 82/251 (32%), Gaps = 19/251 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKV-----------PM 49
+R+ GR+ N++R R A+GS ++ G+T ++ T +V
Sbjct: 236 LRVDGRRWNELRRCHAEVRTQAAADGSSYLEMGNTKVMCVLTGPSEVGQSRARMAGGGGG 295
Query: 50 WIRNTKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGS 109
AE + G RQ R+QE+ I R L +V+
Sbjct: 296 GGGGGGGDAKDAEVIVNIVVAGFSSVNRQRRSRQDKRTQEMAATISRTLAAVLHTHLYPR 355
Query: 110 RQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML 169
I I V+ DG A I A +A D M D ++ +
Sbjct: 356 STITISLHVLSQDGSLLAALINAATLAAVDAGIPMADYVVACSAGS-----SSSYAAADD 410
Query: 170 CGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIAD 229
P++DL+ E+ + + S + + + ML +A D
Sbjct: 411 AADPLLDLNLQEEQELPGLTVATLGASDRVAALVCESRVQA---GRLEGMLAVAVDGCKQ 467
Query: 230 LIKLQKDVISN 240
+ + V+
Sbjct: 468 VRAILDKVVRE 478
>gi|289524415|ref|ZP_06441269.1| polyribonucleotide nucleotidyltransferase [Anaerobaculum
hydrogeniformans ATCC BAA-1850]
gi|289502345|gb|EFD23509.1| polyribonucleotide nucleotidyltransferase [Anaerobaculum
hydrogeniformans ATCC BAA-1850]
Length = 122
Score = 83.7 bits (205), Expect = 2e-14, Method: Composition-based stats.
Identities = 18/77 (23%), Positives = 32/77 (41%), Gaps = 6/77 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL-----EEKVPMWIR-NT 54
+R GR +++R IS + A GS + G+T + TL +E++ ++ +
Sbjct: 46 LRADGRAMDELRPISCEVSLLPRAHGSAVFTRGETQAMVVTTLGMFGEDEQILDGLKLDE 105
Query: 55 KHGWITAEYGMLPRSTG 71
Y P S G
Sbjct: 106 PPKRFMLHYNFPPFSVG 122
>gi|213512498|ref|NP_001134892.1| Exosome complex exonuclease RRP42 [Salmo salar]
gi|209736940|gb|ACI69339.1| Exosome complex exonuclease RRP42 [Salmo salar]
Length = 291
Score = 83.4 bits (204), Expect = 2e-14, Method: Composition-based stats.
Identities = 37/258 (14%), Positives = 73/258 (28%), Gaps = 19/258 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+R+ GR R + + + +GS V G T +L E P + G++
Sbjct: 22 LRVDGRGCEDYRHMEIETEMVSNTDGSAKVTLGHTDVLVGVKAEMGKPRPMVP-GEGYLE 80
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRA---LRSVVDLSALGSRQIIIDCD 117
+T R + + R L+S+ + +D
Sbjct: 81 FFVDCSANATPEFEGRGGDELGMELSNTLYKVFNNRYSVDLKSLCISPGEHCWVLYVDVL 140
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQ--------------LSQVLKGHVAA 163
++Q DG A AL + S + + ++
Sbjct: 141 LLQCDGNLFDAISVAIKAALFNTKIPKVHISEDEEGGKEIELSDDPYDCMRLNVENVPCI 200
Query: 164 ISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLA 223
++ + +VD E + +T G + V+ + + F M
Sbjct: 201 VTLCKVGHRHVVDATLQEKACSVASLIISVTRKGTVTCVRKVG-GGSLDPESIFEMTETG 259
Query: 224 KDRIADLIKLQKDVISNE 241
K L ++ E
Sbjct: 260 KRVGKALHAPLMQLLQEE 277
>gi|223557963|gb|ACM90970.1| polyribonucleotide nucleotidyltransferase [uncultured bacterium
URE12]
Length = 316
Score = 83.4 bits (204), Expect = 2e-14, Method: Composition-based stats.
Identities = 35/229 (15%), Positives = 71/229 (31%), Gaps = 28/229 (12%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLL---TTATLEEKVPM--WIRNTKHGWITAEYGMLP 67
+ ++K A G+ ++ G+T + A+ + P + + T G +P
Sbjct: 19 LYFETGELAKQAGGAVTLRLGETIVFSACCQASKPKDTPPEFTPLSCDYREKTYAAGKIP 78
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R G+ + R+ R++R + Q+
Sbjct: 79 GGFFKR------EGKARDKEILASRLTDRSVRPLFPDYFNTETQVNSLVISADGKNEADV 132
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
+I + AL G V A+ G G I + E +++
Sbjct: 133 LSINASSAALM-------------ISDIPFNGPVGAVRIGKKNGKFIFFPQHEERPGLEM 179
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ T G I+ V+G ++ + + A I + LQ +
Sbjct: 180 ELVISGTRQG-ILMVEGGGKQ--IPNSDLISAMETAHPEIVKICDLQIE 225
>gi|242022077|ref|XP_002431468.1| Exosome complex exonuclease RRP42, putative [Pediculus humanus
corporis]
gi|212516756|gb|EEB18730.1| Exosome complex exonuclease RRP42, putative [Pediculus humanus
corporis]
Length = 290
Score = 83.4 bits (204), Expect = 2e-14, Method: Composition-based stats.
Identities = 38/258 (14%), Positives = 72/258 (27%), Gaps = 20/258 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
R GR ++ R I + V +A GS ++ +T +L E V I N G I
Sbjct: 22 FRYDGRTRSEYRPIEVETDVVSHANGSARLRLANTDILVGVKAEI-VKPTIENPDKGKIE 80
Query: 61 AEYGMLPRSTG---NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
+T R + + ++ L+S+ L ++ +D
Sbjct: 81 FFVDCSANATPAFEKRGGEDLANDLSSALTRAYSAPESLDLKSLCILPKFQCWKLYVDVL 140
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHME-------DCSNKFQLSQVLKG-------HVAA 163
+++ G A G AL +
Sbjct: 141 ILECGGNLFDAVGLGVKAALRNTFIPRVVAAALDGCDPELVISEDPYDCWRLDTSKTPVF 200
Query: 164 ISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLA 223
++ + + +VD E++ SG I + + M+ L
Sbjct: 201 VTVMRIGDHCVVDPGAEEEAVSGGGLLV-SYGSGSITSL-LKISGGSLHPITLREMIQLG 258
Query: 224 KDRIADLIKLQKDVISNE 241
L + + E
Sbjct: 259 GSAGECLQDTLERALKEE 276
>gi|221128137|ref|XP_002160444.1| PREDICTED: similar to 3 exoribonuclease [Hydra magnipapillata]
Length = 437
Score = 83.4 bits (204), Expect = 3e-14, Method: Composition-based stats.
Identities = 37/256 (14%), Positives = 77/256 (30%), Gaps = 20/256 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+RL GRQ R IS+ + G C V+ G+T +L + E V G +
Sbjct: 24 IRLDGRQAFDYRNISIQFGID---YGCCEVQLGETRVLAQTSCEL-VKPIGTRPTEGQLH 79
Query: 61 AEYGMLPRSTGNRVKREAVSGR-QGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119
+ P ++ + S + R E R + G + I D++
Sbjct: 80 LNVDLSPMASPSFETGRMTSQGLEINRLIERCIKESRCIDVESLCLIAGEKVWSIRVDIV 139
Query: 120 QADGGTRTAAITGAWVALHDCLQHMED------------CSNKFQLSQVLKGHVAAISCG 167
+ + D K + + + + G
Sbjct: 140 VLNDCGNILDCSCIAGIASLAHFKHHDVTVTGTEVIIHNFKEKDPIPLNVHHMPISTTFG 199
Query: 168 MLCG--YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKD 225
+ I+D + E+S + G + Q S +F + ++
Sbjct: 200 FIDDGEQMIIDPEEKEESILSGKLIMAFNIYGEVCCAQMSG-GVSFDYEQILQCAKISSV 258
Query: 226 RIADLIKLQKDVISNE 241
+ +++ + K + +
Sbjct: 259 KSSEITNIIKTALDED 274
>gi|320165922|gb|EFW42821.1| exosome component Rrp46 [Capsaspora owczarzaki ATCC 30864]
Length = 227
Score = 83.4 bits (204), Expect = 3e-14, Method: Composition-based stats.
Identities = 46/240 (19%), Positives = 76/240 (31%), Gaps = 21/240 (8%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R GR NQ+RE+S+ V A+GS DT LT +V +
Sbjct: 4 RADGRMPNQLRELSIEHAVLSRADGSSRFSQRDTSALTAVYGPAEVKSSKELLDKATVQT 63
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
+ G RQ AL V+ +A I + V+
Sbjct: 64 VFRPKTGLAGVDDHVCEAILRQ-------------ALEPVIQRTANPRTSITVIVQVMHD 110
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
DG A+ A +AL D M + AA L+
Sbjct: 111 DGALLACALNSASMALIDAGVPMSA----VLAAVTCAWLPAADGSSERRLLLDPTLEEQT 166
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
+T F T+ E+ S+ + D +F + +A+ A+++ + + +
Sbjct: 167 AATSIATFAFESTNQ----EIVFSSTEGQLTVDEYFYTIEMAQKAAANVLAFMRLSLERK 222
>gi|312080640|ref|XP_003142686.1| hypothetical protein LOAG_07104 [Loa loa]
gi|307762153|gb|EFO21387.1| hypothetical protein LOAG_07104 [Loa loa]
Length = 521
Score = 83.4 bits (204), Expect = 3e-14, Method: Composition-based stats.
Identities = 47/258 (18%), Positives = 81/258 (31%), Gaps = 25/258 (9%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R+ GR+ ++ RE+ + GSCLV G+T +L + P +R G +
Sbjct: 151 RIDGRKCDEFREVKVIVG---SELGSCLVMLGETKVLAQVSCSLVEPSTVRGNM-GTVEV 206
Query: 62 EYGMLPRSTGNRVKREAVS-----GRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
M P ++ + S R +I L S+ + QI ID
Sbjct: 207 HVDMSPMASPDYEDGRLGSKGLELMRILELLYRNSGVID--LESLCLRTFKQVWQIRIDV 264
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMED-------------CSNKFQLSQVLKGHVAA 163
V+ +DG A + AL + + V
Sbjct: 265 HVLASDGSLVDCACIASLTALAHFRRPDVSVLPDSIIIASHGNDEKMPISLNIYHMPVCI 324
Query: 164 ISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLA 223
G I+D E+ + I + S S+ ++ A
Sbjct: 325 TFGITSDGQNIIDPTDKEEQCLRGSLIVATNKRHEICALHQSGNFL-LSEQLIVQCVDRA 383
Query: 224 KDRIADLIKLQKDVISNE 241
R D+ +L VI+++
Sbjct: 384 IQRAVDVSELIYSVIADD 401
>gi|302882007|ref|XP_003039914.1| hypothetical protein NECHADRAFT_96576 [Nectria haematococca mpVI
77-13-4]
gi|256720781|gb|EEU34201.1| hypothetical protein NECHADRAFT_96576 [Nectria haematococca mpVI
77-13-4]
Length = 268
Score = 83.4 bits (204), Expect = 3e-14, Method: Composition-based stats.
Identities = 40/242 (16%), Positives = 75/242 (30%), Gaps = 9/242 (3%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+R+ GR+ N++R ++ R A+GS ++ G T ++ T + R +
Sbjct: 13 LRVDGRRWNELRRLNAQIRTQDAADGSSYLEMGHTKVMCVVTGPSEQGQQQRRVQTAQRD 72
Query: 61 AEYGMLPRSTGNRVKREAVSG-RQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119
+ T + R R+QEI+ I A S + I I V+
Sbjct: 73 VAAINVNVVTAGFSSVDRKKRGRNDKRTQEIEVTIANAFASNLHTHLFPHSSITISLHVL 132
Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179
DG A + +AL D M D A ++
Sbjct: 133 SQDGSLLAALLNATTLALIDAGIPMTDY---IAACTAGSTSTYAAGDDSADPLLDLNNQE 189
Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
++ A +D + + ML + D + + V+
Sbjct: 190 EQELPFLTVATLGGSDRVAALVCES-----RVQVSRLEGMLVVGVDGCKQVKQFLDQVVK 244
Query: 240 NE 241
++
Sbjct: 245 DK 246
>gi|293335353|ref|NP_001170333.1| hypothetical protein LOC100384304 [Zea mays]
gi|224030955|gb|ACN34553.1| unknown [Zea mays]
gi|224035157|gb|ACN36654.1| unknown [Zea mays]
Length = 393
Score = 83.4 bits (204), Expect = 3e-14, Method: Composition-based stats.
Identities = 45/261 (17%), Positives = 89/261 (34%), Gaps = 33/261 (12%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+R+ GR R++ +T +GS V+ G+TH++ T++ V + G +
Sbjct: 24 LRVDGRHSFDFRKLKITFG---REDGSSEVQLGETHVMGYVTVQL-VQPYRDRPNEGTLA 79
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSA--------LGSRQI 112
P + + GR G + E+ R+I R LR + +
Sbjct: 80 IFTEFSPMADPSFEP-----GRPGELAIELGRVIDRGLRESRAVDMESLCVVAGKHVWSV 134
Query: 113 IIDCDVIQADGGTRTAAITGAWVALHDCLQHM-------------EDCSNKFQLSQVLKG 159
+D ++ G AA A AL + D + L +
Sbjct: 135 RVDLHILDNGGNLIDAANIAALAALSTFRRPECTVGGDDGQQVTVHDPEVRDPLPLTIHH 194
Query: 160 HVAAISCGML--CGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFF 217
A++ ++D Y E++ + ++ +G + +Q + S
Sbjct: 195 MPIAVTFAYFGEGNIVVLDPTYKEEAVMGGRMTAIVNSNGDVCAIQKAGGEGVMS-SVIM 253
Query: 218 AMLNLAKDRIADLIKLQKDVI 238
L +A + AD+ K +
Sbjct: 254 QCLRIASVKAADITSKIKKAV 274
>gi|18399822|ref|NP_566441.1| RRP45a (Ribonuclease PH45a); 3'-5'-exoribonuclease/ RNA binding
[Arabidopsis thaliana]
gi|79313209|ref|NP_001030684.1| RRP45a (Ribonuclease PH45a); 3'-5'-exoribonuclease/ RNA binding
[Arabidopsis thaliana]
gi|15795131|dbj|BAB02509.1| nucleolar autoantigen-like protein [Arabidopsis thaliana]
gi|27765042|gb|AAO23642.1| At3g12990 [Arabidopsis thaliana]
gi|110742714|dbj|BAE99268.1| hypothetical protein [Arabidopsis thaliana]
gi|332641750|gb|AEE75271.1| ribonuclease PH45A [Arabidopsis thaliana]
gi|332641751|gb|AEE75272.1| ribonuclease PH45A [Arabidopsis thaliana]
gi|332641752|gb|AEE75273.1| ribonuclease PH45A [Arabidopsis thaliana]
Length = 307
Score = 83.4 bits (204), Expect = 3e-14, Method: Composition-based stats.
Identities = 44/257 (17%), Positives = 83/257 (32%), Gaps = 23/257 (8%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+R+ GR R++++ GS V+ G TH++ T + V + G +
Sbjct: 27 LRVDGRGLYDYRKLTIKFG---KEYGSSQVQLGQTHVMAFVTAQL-VQPYKDRPSEGSFS 82
Query: 61 AEYGMLPRSTGNRVKREAVSGR-QGGRSQEIQRMIGRALRSVVDLSALGS--RQIIIDCD 117
P + + + GR + RA+ + G + ID
Sbjct: 83 IFTEFSPMADPSFEPGHPGESAVELGRIIDRALRESRAVDTESLCVLAGKLVWSVRIDLH 142
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHM-------------EDCSNKFQLSQVLKGHVAAI 164
++ G AA A AL + + L ++ A
Sbjct: 143 ILDNGGNLVDAANVAALAALMTFRRPDCTVGGDNSQDVIIHPPEEREPLPLIIHHLPIAF 202
Query: 165 SCGMLCG--YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNL 222
+ G ++D Y E++ + + +G I +Q E +Q L L
Sbjct: 203 TFGFFNKGSILVMDPTYVEEAVMCGRMTVTVNANGDICAIQKPGEEG-VNQSVILHCLRL 261
Query: 223 AKDRIADLIKLQKDVIS 239
A R + K+ +D +
Sbjct: 262 ASSRASATTKIIRDAVE 278
>gi|223945461|gb|ACN26814.1| unknown [Zea mays]
Length = 306
Score = 83.4 bits (204), Expect = 3e-14, Method: Composition-based stats.
Identities = 51/262 (19%), Positives = 87/262 (33%), Gaps = 25/262 (9%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+R+ R+ + R ++ A GS LV+ GDT +L + LE P G ++
Sbjct: 39 VRIDARRLREARTTTVALGAVSSAHGSALVRVGDTAMLASVKLEVMSPSA-EYPDEGSVS 97
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQR-MIGRALRSVVDLSALGS--RQIIIDCD 117
E+ M P + + M R L G +D
Sbjct: 98 VEFHMPPICSPLVRPGRSAEVAPVISKALEDVLMSSRMLNLKDLCLITGKASWLAYLDIY 157
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGH----------------- 160
+ ADG AA+ A A + + +L V
Sbjct: 158 CLNADGSLFDAALISAVAAFTHLEIPLVSVGDDGKLFTVGGNDGKNKFELVNREKRKLTL 217
Query: 161 ---VAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFF 217
+++C + G + D E+S I+ V+ S +V +Q T S
Sbjct: 218 GDIPLSLTCALHKGSILTDPTSEEESIIETYVTVVVDSSDRLVSLQKVGGTVT-SMATIK 276
Query: 218 AMLNLAKDRIADLIKLQKDVIS 239
++LAK+R L ++ D +
Sbjct: 277 ECISLAKERRLRLREILIDSVK 298
>gi|254479104|ref|ZP_05092456.1| 3' exoribonuclease family, domain 2, protein [Carboxydibrachium
pacificum DSM 12653]
gi|214034953|gb|EEB75675.1| 3' exoribonuclease family, domain 2, protein [Carboxydibrachium
pacificum DSM 12653]
Length = 333
Score = 83.4 bits (204), Expect = 3e-14, Method: Composition-based stats.
Identities = 32/181 (17%), Positives = 61/181 (33%), Gaps = 14/181 (7%)
Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119
Y P S G R+ G RAL V+ I + +V+
Sbjct: 1 MHHYNFPPYSVGEVRPLRGPGRREIGHGAL----AERALEPVIPSEEEFPYTIRLVSEVL 56
Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179
++G T A++ G+ +AL D ++ + + + + D+
Sbjct: 57 SSNGSTSQASVCGSTLALMDAGVPIKAPVAGIAMGLIKEEDEV---------LILTDIQG 107
Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
ED D+D T+ G + +Q + +D L A+ +++ +VI
Sbjct: 108 IEDFLGDMDFKVAGTEKG-VTAIQMDIKIPGIDRDILQMALEKARKARLYVLQKMLEVIK 166
Query: 240 N 240
Sbjct: 167 E 167
>gi|307111365|gb|EFN59599.1| hypothetical protein CHLNCDRAFT_132993 [Chlorella variabilis]
Length = 292
Score = 83.0 bits (203), Expect = 3e-14, Method: Composition-based stats.
Identities = 38/270 (14%), Positives = 65/270 (24%), Gaps = 42/270 (15%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R GRQ R +S+ A GS V+ G+T ++ E P + G +
Sbjct: 23 RNDGRQREDFRPLSVKLGELAQATGSARVQLGETDVIVGVKAEIGSPD-LDRPDCGRLNF 81
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGS------------ 109
P ++ G E+ + RAL + G
Sbjct: 82 AVECSPVASPAFR---------GRGGDELAGELSRALERSMYPGPSGRGGGVDLSLLSIV 132
Query: 110 -----RQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAI 164
+ +D ++ G A A AL D + + V
Sbjct: 133 SGKTCWVLYVDALLLNIGGNLHDAVSVAAKAALADAKIPKVEVQPGEDPTDEPDYEVDDD 192
Query: 165 SCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIV-------EVQGSAER--------A 209
+ S I +T + V +
Sbjct: 193 PSEAMRLDVGGMPICVTVSQIGGHCVVDLTAEEELCSSAALQVAVDATGNVCGTTKRRRG 252
Query: 210 TFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
M+ A+ A L + +
Sbjct: 253 GIEASQALEMVEAAQRAAAKLHAALNEALG 282
>gi|161616815|ref|YP_001590779.1| hypothetical protein SPAB_04634 [Salmonella enterica subsp.
enterica serovar Paratyphi B str. SPB7]
gi|161366179|gb|ABX69947.1| hypothetical protein SPAB_04634 [Salmonella enterica subsp.
enterica serovar Paratyphi B str. SPB7]
Length = 174
Score = 83.0 bits (203), Expect = 3e-14, Method: Composition-based stats.
Identities = 89/176 (50%), Positives = 113/176 (64%), Gaps = 2/176 (1%)
Query: 65 MLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGG 124
MLPR+T R REA G+QGGR+ EIQR+I RALR+ VDL LG I +DCDVIQADGG
Sbjct: 1 MLPRATHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKTLGEFTITLDCDVIQADGG 60
Query: 125 TRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDST 184
TRTA+ITGA VAL D L + + +KG VAA+S G++ G I DL+Y EDS
Sbjct: 61 TRTASITGACVALADALNKLVAN--GKLKTNPMKGMVAAVSVGIVNGEAICDLEYVEDSA 118
Query: 185 IDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
+ D N VMT+ G I+EVQG+AE FS + +L LA+ I ++ QK + N
Sbjct: 119 AETDMNVVMTEDGRIIEVQGTAEGEPFSHEELLTLLALARGGIESIVATQKAALEN 174
>gi|21536581|gb|AAM60913.1| nucleolar autoantigen-like protein [Arabidopsis thaliana]
Length = 307
Score = 83.0 bits (203), Expect = 3e-14, Method: Composition-based stats.
Identities = 44/257 (17%), Positives = 83/257 (32%), Gaps = 23/257 (8%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+R+ GR R++++ GS V+ G TH++ T + V + G +
Sbjct: 27 LRVDGRGLYDYRKLTIKFG---KEYGSSQVQLGQTHVMAFVTAQL-VQPYKDRPSEGSFS 82
Query: 61 AEYGMLPRSTGNRVKREAVSGR-QGGRSQEIQRMIGRALRSVVDLSALGS--RQIIIDCD 117
P + + + GR + RA+ + G + ID
Sbjct: 83 IFTEFSPMADPSFEPGHPGESAVELGRIIDRALRESRAVDTESLCVLAGKLVWSVRIDLH 142
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHM-------------EDCSNKFQLSQVLKGHVAAI 164
++ G AA A AL + + L ++ A
Sbjct: 143 ILDNGGNLVDAANVAALAALMTFRRPDCTVGGDNSQDVIIHPPEEREPLPLIIHHLPIAF 202
Query: 165 SCGMLCG--YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNL 222
+ G ++D Y E++ + + +G I +Q E +Q L L
Sbjct: 203 TFGFFNKGSILVMDPTYVEEAVMCGRMTVTVNANGDICAIQKPGEEG-VNQSVILHCLRL 261
Query: 223 AKDRIADLIKLQKDVIS 239
A R + K+ +D +
Sbjct: 262 ASSRASATTKIIRDAVE 278
>gi|224045546|ref|XP_002199163.1| PREDICTED: exosome component 7 [Taeniopygia guttata]
Length = 290
Score = 83.0 bits (203), Expect = 3e-14, Method: Composition-based stats.
Identities = 35/257 (13%), Positives = 70/257 (27%), Gaps = 18/257 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+R+ GR R + V GS VK G+T +L E P + G++
Sbjct: 22 LRVDGRGCEDYRCAEVETDVVSNTSGSARVKLGETDILVGIKAEMGTPK-LEKPDEGYLE 80
Query: 61 AEYGMLPRST--GNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDV 118
S R E + + L+S+ + +D +
Sbjct: 81 FFVDCSSNSPELEGRGGEELGTDIANTLYRIFSCENSVDLKSLCINPKEHCWVLYVDVLL 140
Query: 119 IQADGGTRTAAITGAWVALHDCLQHMED-------CSNKFQLSQVLKGH-------VAAI 164
++ G A AL + +
Sbjct: 141 LECGGNIFDAISIAVKAALFNTRIPKVRVLEDEEGTKEIELSDDPYDCIRLNIDEVPCVV 200
Query: 165 SCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAK 224
+ + +VD E++ +T G I ++ + + + F M+ +
Sbjct: 201 TLSKIGYRHVVDATLQEEACSLASLLISVTSKGAITSMKKVGK-GSLDPESIFEMMETGQ 259
Query: 225 DRIADLIKLQKDVISNE 241
L + ++ E
Sbjct: 260 RVGKSLHIALQKILDEE 276
>gi|299470099|emb|CBN78128.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 270
Score = 83.0 bits (203), Expect = 3e-14, Method: Composition-based stats.
Identities = 45/240 (18%), Positives = 82/240 (34%), Gaps = 20/240 (8%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEE-KVPMWIRNTKHGWIT 60
R GR MR++ + V +A GS V+F T ++ + ++ G +
Sbjct: 43 REDGRAPYDMRQVYMDVGVVAHATGSAYVEFNHTKVICAVYGPHAQTGGDSAFSEEGQLQ 102
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
++ P + + + R E+ ++ + L S + + L + + V+Q
Sbjct: 103 CDFSYAPFAMPGGRRETRGGKKDDER--ELSTLLRQTLESSIQVHRLTKSVVGVHVMVLQ 160
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGG A T A +AL D + D V A S G ++D
Sbjct: 161 ADGGELAVATTCASMALADAGIELYDL-------------VTACSVGYCGTQMVLDPTKE 207
Query: 181 EDSTIDVDANFV-MTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
E+ + M S + + F L L D + K+ + +
Sbjct: 208 EEKSGAGVMTIALMPGSQQVTQWWQEGR---FDGQKVAEALELCTDGCGCVHKMMEAKLK 264
>gi|328793187|ref|XP_623498.2| PREDICTED: exosome complex exonuclease MTR3-like isoform 1 [Apis
mellifera]
Length = 270
Score = 83.0 bits (203), Expect = 3e-14, Method: Composition-based stats.
Identities = 37/238 (15%), Positives = 77/238 (32%), Gaps = 12/238 (5%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+R R N+MR+I L + A+GS ++ G+T ++ + ++ G I
Sbjct: 36 IRNDKRSNNEMRKIFLKTGIVSQAKGSAYIELGNTKVVCSVFDPRELSNRNGYCSQGEIY 95
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
E+ P S R + Q ++ ++ RAL + Q+ + V+
Sbjct: 96 CEFKFAPFSCQKRKIHQ-----QDAEEKQYSLILQRALE---PAHEFPNFQVDVYAMVLD 147
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
G + AAI A AL + M + ++ + D
Sbjct: 148 NAGSSLAAAIMAASTALANAGVPMFGLVTASTIGIYDNHYLMDPTDTEEV-ICNTQPDNQ 206
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
+D + + + EV + + + D+ + + +
Sbjct: 207 DDFNHGIITLASLAQHNQVSEVFL---IGSIDTNSIIQATEILTTVNKDICPVLQQCL 261
>gi|270009587|gb|EFA06035.1| hypothetical protein TcasGA2_TC008865 [Tribolium castaneum]
Length = 300
Score = 83.0 bits (203), Expect = 3e-14, Method: Composition-based stats.
Identities = 50/259 (19%), Positives = 87/259 (33%), Gaps = 27/259 (10%)
Query: 2 RLSGRQENQMREI------------------SLTRRVSKYAEGSCLVKFGDTHLLTTATL 43
R GR + R+I L V A+GS ++ T ++ +
Sbjct: 42 RADGRTSTEHRKICNLSLGPCVFLDLIFNFLVLKTGVVSQAKGSAYIELDQTKVIVSVFD 101
Query: 44 EEKVPMWIRNTKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVD 103
++P + G I E+ P S R +Q Q+ ++ +AL S V
Sbjct: 102 PREIPNKTDYSSKGEIYCEFKFAPFSCHKRR-----LHQQDAEEQQFSAIMKQALESAVF 156
Query: 104 LSALGSRQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAA 163
+ Q+ I V+ DG +AAIT A VAL M D L+ +
Sbjct: 157 RHEFPNFQVDIYAMVLHNDGAALSAAITAAGVALAHAGIPMYDLITSVTLAVQGNHLLVD 216
Query: 164 ISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLA 223
+ + E++ V + + T I + S S + + +
Sbjct: 217 PTLEEERLCQVPLFKEEENNHGIVVLSVLATHE-QISQFYQSGY---LSYACLSSGIEML 272
Query: 224 KDRIADLIKLQKDVISNEV 242
+ D++ L K + V
Sbjct: 273 TNAAKDIVTLVKKCLVKHV 291
>gi|115442662|ref|XP_001218138.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
gi|114188007|gb|EAU29707.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
Length = 268
Score = 83.0 bits (203), Expect = 3e-14, Method: Composition-based stats.
Identities = 34/256 (13%), Positives = 75/256 (29%), Gaps = 23/256 (8%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWI-----RNTK 55
+RL GR+ N++R + + GS + G+T ++ + + +
Sbjct: 14 LRLDGRRWNELRLFQAQISTNPASSGSSYLAMGNTTIMCSVHGPAEGRRGDATGGSAGSS 73
Query: 56 HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115
+ + + + +R +R S RQ + + A +S + I I
Sbjct: 74 GAVVEVDVNVAGFAGVDRKRRAGGSDRQS---SRVATTLRAAFQSHLHTYLYPHSTISIH 130
Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIV 175
V+ +DG AA+ +AL D M +
Sbjct: 131 VSVLSSDGSLLAAAVNACTLALVDAGIPMPGLLCGCTAGMSGSASTPRDPHNDQLDPLLD 190
Query: 176 DLDYGEDSTIDVDANFVMT------------DSGHIVEVQGSAERATFSQDHFFAMLNLA 223
E + + + + + ++ + ML +
Sbjct: 191 LSLPEEQELPFLTVGTTSSIPVGENAMDTDEEDMKVTMLNMDSK---VHCSYIETMLAVG 247
Query: 224 KDRIADLIKLQKDVIS 239
D + ++ + VI
Sbjct: 248 IDGCKQIREIMEGVIK 263
>gi|91080613|ref|XP_974147.1| PREDICTED: similar to AGAP002348-PA [Tribolium castaneum]
gi|270005510|gb|EFA01958.1| hypothetical protein TcasGA2_TC007574 [Tribolium castaneum]
Length = 389
Score = 83.0 bits (203), Expect = 4e-14, Method: Composition-based stats.
Identities = 35/255 (13%), Positives = 74/255 (29%), Gaps = 20/255 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
RL GR ++ R + L K GSC V G+T +L + E + P R + G +
Sbjct: 26 RLDGRSFDEFRPLELKFG--KQ-WGSCYVSLGNTKVLAQTSCEIQQPKSSRPS-EGILNI 81
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIG-RALRSVVDLSALGS--RQIIIDCDV 118
+ P + + + + +A+ + +D +V
Sbjct: 82 NIELNPLAAPHFEAGRQSELSVQLNRLLEKCVKDSKAVDLESLCIKTNEKVWALKVDINV 141
Query: 119 IQADGGTRTAAITGAWVALHDCLQHMEDC---SNKFQLSQVLKGHVAAISCGMLCGYPIV 175
+ +G A +L + C Q I +C +
Sbjct: 142 LNHEGNILDCASIAMLASLTHFRRPDVTCDGEEFIIHSYQQRDPIPTVIHHYPVCITYAI 201
Query: 176 DLDYGE---------DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226
+ + D + + + + A + + ++ A R
Sbjct: 202 FNGGEYILADPSLLEEGSADAMLTIGLNGFKELCALHLGGK-AELAPSIILSTVSKATSR 260
Query: 227 IADLIKLQKDVISNE 241
+I+ K + +
Sbjct: 261 ATVVIEEIKKSVKAD 275
>gi|189083688|ref|NP_055819.2| exosome complex component RRP42 [Homo sapiens]
gi|322510129|sp|Q15024|EXOS7_HUMAN RecName: Full=Exosome complex component RRP42; AltName:
Full=Exosome component 7; AltName: Full=Ribosomal
RNA-processing protein 42; AltName: Full=p8
gi|119585135|gb|EAW64731.1| exosome component 7, isoform CRA_a [Homo sapiens]
gi|119585136|gb|EAW64732.1| exosome component 7, isoform CRA_a [Homo sapiens]
gi|119585137|gb|EAW64733.1| exosome component 7, isoform CRA_a [Homo sapiens]
Length = 291
Score = 83.0 bits (203), Expect = 4e-14, Method: Composition-based stats.
Identities = 34/258 (13%), Positives = 73/258 (28%), Gaps = 19/258 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+R+ GR R + + V GS VK G T +L E P + G++
Sbjct: 22 LRVDGRGCEDYRCVEVETDVVSNTSGSARVKLGHTDILVGVKAEMGTPK-LEKPNEGYLE 80
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRA---LRSVVDLSALGSRQIIIDCD 117
+T R + + ++ L+++ + +D
Sbjct: 81 FFVDCSASATPEFEGRGGDDLGTEIANTLYRIFNNKSSVDLKTLCISPREHCWVLYVDVL 140
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMED-------CSNKFQLSQVLKGH-------VAA 163
+++ G A AL + +
Sbjct: 141 LLECGGNLFDAISIAVKAALFNTRIPRVRVLEDEEGSKDIELSDDPYDCIRLSVENVPCI 200
Query: 164 ISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLA 223
++ + +VD E++ +T G + ++ + + + F M+
Sbjct: 201 VTLCKIGYRHVVDATLQEEACSLASLLVSVTSKGVVTCMRKVGK-GSLDPESIFEMMETG 259
Query: 224 KDRIADLIKLQKDVISNE 241
K L + V+ E
Sbjct: 260 KRVGKVLHASLQSVVHKE 277
>gi|281207355|gb|EFA81538.1| Putative exosome complex exonuclease [Polysphondylium pallidum
PN500]
Length = 470
Score = 82.6 bits (202), Expect = 4e-14, Method: Composition-based stats.
Identities = 44/255 (17%), Positives = 83/255 (32%), Gaps = 17/255 (6%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+R+ GR+ N MR I + K G V+ G T + TT T E P R + +I
Sbjct: 21 LRVDGRRLNDMRSIKINFG--KQ-YGMVEVQLGRTRVYTTVTCEVTEPKPERPNEGFFIF 77
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALG--SRQIIIDCDV 118
S R + GR E RA+ + G ++ + V
Sbjct: 78 NTDVSPMSSVSVDSSRGNPVEAELGRLIERGLKESRAIDTEALCIVAGSKVWKVKTNVHV 137
Query: 119 IQADGGTRTAAITGAWVALHDCLQHMEDCS----------NKFQLSQVLKGHVAAISCGM 168
+ G A AL + + + + +I+ G
Sbjct: 138 LDDCGNLLDCASISVITALLHFRKPDVTVVGNDATIHPIDEREPVPLSIHHTPISITFGF 197
Query: 169 LCGYPIV-DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRI 227
++ D D E+ +D +F + I V +T + + ++ R
Sbjct: 198 FPKAIMIVDPDNKEEQVMDGKLSFYVNVHKEICGVSKGGGMST-TIEQVIKCSKISVIRA 256
Query: 228 ADLIKLQKDVISNEV 242
++ +L ++ + +
Sbjct: 257 TEITQLIREALHQNI 271
>gi|189055112|dbj|BAG38096.1| unnamed protein product [Homo sapiens]
Length = 291
Score = 82.6 bits (202), Expect = 4e-14, Method: Composition-based stats.
Identities = 34/258 (13%), Positives = 73/258 (28%), Gaps = 19/258 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+R+ GR R + + V GS VK G T +L E P + G++
Sbjct: 22 LRVDGRGREDYRCVEVETDVVSNTSGSARVKLGHTDILVGVKAEMGTPK-LEKPNEGYLE 80
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRA---LRSVVDLSALGSRQIIIDCD 117
+T R + + ++ L+++ + +D
Sbjct: 81 FFVDCSASATPEFEGRGGDDLGTEIANTLYRIFNNKSSVDLKTLCISPREHCWVLYVDVL 140
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMED-------CSNKFQLSQVLKGH-------VAA 163
+++ G A AL + +
Sbjct: 141 LLECGGNLFDAISIAVKAALFNTRIPRVRVLEDEEGSKDIELSDDPYDCIRLSVENVPCI 200
Query: 164 ISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLA 223
++ + +VD E++ +T G + ++ + + + F M+
Sbjct: 201 VTLCKIGYRHVVDATLQEEACSLASLLVSVTSKGVVTCMRKVGK-GSLDPESIFEMMETG 259
Query: 224 KDRIADLIKLQKDVISNE 241
K L + V+ E
Sbjct: 260 KRVGKVLHASLQSVVHKE 277
>gi|332215753|ref|XP_003257009.1| PREDICTED: exosome complex exonuclease RRP42-like [Nomascus
leucogenys]
gi|332215755|ref|XP_003257010.1| PREDICTED: exosome complex exonuclease RRP42-like [Nomascus
leucogenys]
Length = 291
Score = 82.6 bits (202), Expect = 4e-14, Method: Composition-based stats.
Identities = 33/258 (12%), Positives = 73/258 (28%), Gaps = 19/258 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+R+ GR R + + V GS VK G T +L E P + G++
Sbjct: 22 LRVDGRGCEDYRCVEVETDVVSNTSGSARVKLGHTDILVGVKAEMGTPK-LEKPNEGYLE 80
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRA---LRSVVDLSALGSRQIIIDCD 117
+T R + + ++ L+++ + +D
Sbjct: 81 FFVDCSASATPEFEGRGGDDLGTEIANTLYRIFNNKSSVDLKTLCISPREHCWVLYVDVL 140
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMED-------CSNKFQLSQVLKGH-------VAA 163
+++ G A AL + +
Sbjct: 141 LLECGGNLFDAISIAVKAALFNTRIPRVRVLEDEEGSKDIELSDDPYDCIRLSVENVPCI 200
Query: 164 ISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLA 223
++ + +VD E++ +T G + ++ + + + F M+
Sbjct: 201 VTLCKIGYRHVVDATLQEEACSLASLLVSVTSKGVVTCMRKVGK-GSLDPESIFEMMETG 259
Query: 224 KDRIADLIKLQKDVISNE 241
K L + ++ E
Sbjct: 260 KRVGKVLHASLQSLLHKE 277
>gi|297817356|ref|XP_002876561.1| hypothetical protein ARALYDRAFT_486522 [Arabidopsis lyrata subsp.
lyrata]
gi|297322399|gb|EFH52820.1| hypothetical protein ARALYDRAFT_486522 [Arabidopsis lyrata subsp.
lyrata]
Length = 438
Score = 82.6 bits (202), Expect = 4e-14, Method: Composition-based stats.
Identities = 44/254 (17%), Positives = 83/254 (32%), Gaps = 23/254 (9%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+R+ GR R++++ GS V+ G TH++ T + V + G ++
Sbjct: 27 LRVDGRGLYDYRKLTIKFG---KEYGSSEVQLGQTHVMGFVTA-QMVQPYKDRPNEGSLS 82
Query: 61 AEYGMLPRSTGNRVKREAVSGR-QGGRSQEIQRMIGRALRSVVDLSALGS--RQIIIDCD 117
P + + + GR + RA+ + G + ID
Sbjct: 83 IFTEFSPMADPSFEPGRPGESAVELGRIIDRGLRESRAVDTESLCILAGKMVWSVRIDLH 142
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHM-------------EDCSNKFQLSQVLKGHVAAI 164
++ G AA A AL + + L ++ A
Sbjct: 143 ILDNGGNLVDAANIAALAALMTFRRPDCTVGGENGQEVIIHPPEEREPLPLIIHHLPIAF 202
Query: 165 SCGMLC--GYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNL 222
+ G ++D Y E++ + + +G I +Q E +Q L L
Sbjct: 203 TFGFFNKGNIVVMDPTYVEEAVMCGRMTVTVNANGDICAIQKPGEEG-VNQSVILHCLRL 261
Query: 223 AKDRIADLIKLQKD 236
A R A K+ ++
Sbjct: 262 ASSRAAATTKIIRE 275
>gi|242083100|ref|XP_002441975.1| hypothetical protein SORBIDRAFT_08g006250 [Sorghum bicolor]
gi|241942668|gb|EES15813.1| hypothetical protein SORBIDRAFT_08g006250 [Sorghum bicolor]
Length = 287
Score = 82.6 bits (202), Expect = 4e-14, Method: Composition-based stats.
Identities = 47/257 (18%), Positives = 83/257 (32%), Gaps = 24/257 (9%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+R GR+ Q R +S+ V A GS V+ G T ++ + E P + G ++
Sbjct: 21 IRTDGRRRLQFRALSVQTGVIPQANGSARVRLGVTEIIASVKAELGKPSILHP-DKGKVS 79
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRA--------LRSVVDLSALGSRQI 112
P + R + + + ++G L S++ + +
Sbjct: 80 IFVDCSPTAEPMFEGRGSEELSAELSAALQRCLLGGKSGSGAAIDLSSLIVVEGKVCWDL 139
Query: 113 IIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGH------------ 160
ID V+ +DG A VAL D + S + + +
Sbjct: 140 YIDGLVVSSDGNLLDALAAAIKVALSDTGIPKVNVSVSAASEEEPEVNVSDEEFLQFDTS 199
Query: 161 --VAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFA 218
I+ + + IVD E+S + + G I + A
Sbjct: 200 GVPVIITLTKVGRHYIVDATSEEESQTSSAVSVSVNRHGQICGLSKRG-GAGLDPSVILD 258
Query: 219 MLNLAKDRIADLIKLQK 235
ML++AK I L
Sbjct: 259 MLSVAKHVSQQFISLLD 275
>gi|225460698|ref|XP_002270464.1| PREDICTED: hypothetical protein [Vitis vinifera]
Length = 467
Score = 82.6 bits (202), Expect = 4e-14, Method: Composition-based stats.
Identities = 46/262 (17%), Positives = 90/262 (34%), Gaps = 33/262 (12%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+R+ GR+ R IS+ +GS V+ G TH++ T + + + G ++
Sbjct: 27 LRIDGRRPFDFRRISIKFG---REDGSSEVQLGQTHVMGFVTGQL-IQPYRDRPNEGTLS 82
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALG--------SRQI 112
P + + +GR G + E+ R+I R LR + I
Sbjct: 83 IYTEFSPMADPSF-----EAGRPGEAAVELGRVIDRGLRESRAVDMESLCVLAGKLVWSI 137
Query: 113 IIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCS-------------NKFQLSQVLKG 159
ID +I G AA A AL + + L ++
Sbjct: 138 RIDLHIIDNGGNLIDAANIAALAALLTFRRPECSFGGEDGQELIVHPPEVREPLPLIVHH 197
Query: 160 HVAAISCGM--LCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFF 217
A++ + ++D + E++ + + +G + +Q + Q
Sbjct: 198 LPIAVTFAIIGNENIMVIDPTHSEEAVMGGRMTATLNTNGDVCAIQKAGGEGII-QSVIM 256
Query: 218 AMLNLAKDRIADLIKLQKDVIS 239
L +A + AD+ K+ +
Sbjct: 257 QCLRIASVKAADITSKIKNAVE 278
>gi|122920911|pdb|2NN6|E Chain E, Structure Of The Human Rna Exosome Composed Of Rrp41,
Rrp45, Rrp46, Rrp43, Mtr3, Rrp42, Csl4, Rrp4, And Rrp40
Length = 305
Score = 82.6 bits (202), Expect = 4e-14, Method: Composition-based stats.
Identities = 34/258 (13%), Positives = 73/258 (28%), Gaps = 19/258 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+R+ GR R + + V GS VK G T +L E P + G++
Sbjct: 36 LRVDGRGCEDYRCVEVETDVVSNTSGSARVKLGHTDILVGVKAEMGTPK-LEKPNEGYLE 94
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRA---LRSVVDLSALGSRQIIIDCD 117
+T R + + ++ L+++ + +D
Sbjct: 95 FFVDCSASATPEFEGRGGDDLGTEIANTLYRIFNNKSSVDLKTLCISPREHCWVLYVDVL 154
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMED-------CSNKFQLSQVLKGH-------VAA 163
+++ G A AL + +
Sbjct: 155 LLECGGNLFDAISIAVKAALFNTRIPRVRVLEDEEGSKDIELSDDPYDCIRLSVENVPCI 214
Query: 164 ISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLA 223
++ + +VD E++ +T G + ++ + + + F M+
Sbjct: 215 VTLCKIGYRHVVDATLQEEACSLASLLVSVTSKGVVTCMRKVGK-GSLDPESIFEMMETG 273
Query: 224 KDRIADLIKLQKDVISNE 241
K L + V+ E
Sbjct: 274 KRVGKVLHASLQSVVHKE 291
>gi|195636336|gb|ACG37636.1| exosome complex exonuclease RRP42 [Zea mays]
Length = 287
Score = 82.6 bits (202), Expect = 4e-14, Method: Composition-based stats.
Identities = 47/257 (18%), Positives = 82/257 (31%), Gaps = 24/257 (9%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+R GR+ Q R +S+ V A GS V+ G T ++ + E P + G +
Sbjct: 20 VRTDGRRRLQFRSLSVQTGVIPQANGSARVRLGATEIIASVKAELGKPSILHP-DKGKVA 78
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRA--------LRSVVDLSALGSRQI 112
P + R + + ++G L S++ + +
Sbjct: 79 IFVDCSPTAEPLFEGRGSEELSAELSVSLQRCLLGGKSGAGAAIDLSSLIVVDGKVCWDL 138
Query: 113 IIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGH------------ 160
ID V+ +DG A VAL D + S + +
Sbjct: 139 YIDGLVVSSDGNLLDALAVAIKVALSDTGIPKVNVSVSAASDEEPEVDVSDEEFLQFDTS 198
Query: 161 --VAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFA 218
I+ + + IVD E+S + + + G I + A F
Sbjct: 199 GVPVIITLTKVGRHYIVDATSEEESQMSSAVSVSVNRHGQICGLTKRG-GAGLDPSVIFD 257
Query: 219 MLNLAKDRIADLIKLQK 235
M+++AK I L
Sbjct: 258 MISVAKHVSQQFISLLD 274
>gi|194707850|gb|ACF88009.1| unknown [Zea mays]
gi|223975603|gb|ACN31989.1| unknown [Zea mays]
Length = 287
Score = 82.6 bits (202), Expect = 4e-14, Method: Composition-based stats.
Identities = 47/257 (18%), Positives = 82/257 (31%), Gaps = 24/257 (9%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+R GR+ Q R +S+ V A GS V+ G T ++ + E P + G +
Sbjct: 20 VRTDGRRRLQFRSLSVQTGVIPQANGSARVRLGATEIIASVKAELGKPSILHP-DKGKVA 78
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRA--------LRSVVDLSALGSRQI 112
P + R + + ++G L S++ + +
Sbjct: 79 IFVDCSPTAEPLFEGRGSEELSAELSVSLQRCLLGGKSGAGAAIDLSSLIVVDGKVCWDL 138
Query: 113 IIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGH------------ 160
ID V+ +DG A VAL D + S + +
Sbjct: 139 YIDGLVVSSDGNLLDALAVAIKVALSDTGIPKVNVSVSAASDEEPEVDVSDEEFLQFDTS 198
Query: 161 --VAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFA 218
I+ + + IVD E+S + + + G I + A F
Sbjct: 199 GVPVIITLTKVGRHYIVDATSEEESQMSSAVSVSVNRHGQICGLTKRG-GAGLDPSVIFD 257
Query: 219 MLNLAKDRIADLIKLQK 235
M+++AK I L
Sbjct: 258 MISVAKHVSQQFISLLD 274
>gi|296224998|ref|XP_002807638.1| PREDICTED: LOW QUALITY PROTEIN: exosome complex exonuclease
RRP42-like [Callithrix jacchus]
Length = 459
Score = 82.6 bits (202), Expect = 4e-14, Method: Composition-based stats.
Identities = 34/258 (13%), Positives = 77/258 (29%), Gaps = 19/258 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+R+ GR R + + V GS VK G T +L E +P + G++
Sbjct: 22 LRVDGRGCEDYRCVEVETDVVSNTSGSARVKLGHTDILVGVKAEMGMPK-LEKPNEGYLE 80
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRA---LRSVVDLSALGSRQIIIDCD 117
+T R + + ++ L+++ + + +D
Sbjct: 81 FFVDCSANATPEFEGRGGDDLGTEIANTLYRIFNNKSSVDLKTLCISAREHCWVLYVDVL 140
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMED-------CSNKFQLSQVLKGH-------VAA 163
+++ DG A AL + +
Sbjct: 141 LLECDGNLFDAISIAVKAALFNTRIPRVRVLEDEEGSKDIELSDDPYDCIRLSVENVPCI 200
Query: 164 ISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLA 223
++ + +VD E++ +T G + ++ + + + F M+ +
Sbjct: 201 VTLCKIGYQHVVDATLQEEACSLASLLVSVTSKGVVTCLRKVGK-GSLDPESIFEMMETS 259
Query: 224 KDRIADLIKLQKDVISNE 241
K L + ++ E
Sbjct: 260 KRVGKVLHASLQSILHKE 277
>gi|6466958|gb|AAF13093.1|AC009176_20 hypothetical protein [Arabidopsis thaliana]
Length = 297
Score = 82.6 bits (202), Expect = 4e-14, Method: Composition-based stats.
Identities = 40/272 (14%), Positives = 80/272 (29%), Gaps = 35/272 (12%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+R GR+ R I + V A GS V+ G T ++ + E P ++ G +
Sbjct: 19 LRTDGRKRLTYRPIYVETGVIPQANGSARVRIGGTDVIASVKAEIGRPSSLQP-DKGKVA 77
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSAL------------- 107
P + R + ++G + + S
Sbjct: 78 VFIDCSPTAEPTFGGRGGEELSSELALALQRCLLGGKSGAGLQSSIHVLVPGAGINLSSL 137
Query: 108 --GSRQIIIDCDVIQADGGTRTAAITGAWVALHDCL------------------QHMEDC 147
++ D + + + A+ L Q D
Sbjct: 138 LIKEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALTNTAIPKVNVSAEVADDEQPEIDI 197
Query: 148 SNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAE 207
S++ L ++ + + IVD E+S + + + +GHI + +
Sbjct: 198 SDEEYLQFDTSSVPVIVTLTKVGTHYIVDATAEEESQMSSAVSISVNRTGHICGLTKRS- 256
Query: 208 RATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
+ M+++AK L+ IS
Sbjct: 257 GSGLDPSVILDMISVAKHVTETLMSKLDSEIS 288
>gi|195620544|gb|ACG32102.1| exosome complex exonuclease RRP42 [Zea mays]
Length = 287
Score = 82.6 bits (202), Expect = 5e-14, Method: Composition-based stats.
Identities = 47/257 (18%), Positives = 82/257 (31%), Gaps = 24/257 (9%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+R GR+ Q R +S+ V A GS V+ G T ++ + E P + G +
Sbjct: 20 LRTDGRRRLQFRSLSVQTGVIPQANGSARVRLGATDIIASVKAELGKPSILHP-DKGKVA 78
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRA--------LRSVVDLSALGSRQI 112
P + R + + ++G L S++ + +
Sbjct: 79 IFVDCSPTAEPLFEGRGSEELSAELSVSLQRCLLGGKSGAGAAIDLSSLIVVDGKVCWDL 138
Query: 113 IIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGH------------ 160
ID V+ +DG A VAL D + S + +
Sbjct: 139 YIDGLVVSSDGNLLDALAVAIKVALSDTGIPKVNVSVSAASDEEPEVDVSDEEFLQFDTS 198
Query: 161 --VAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFA 218
I+ + + IVD E+S + + + G I + A F
Sbjct: 199 GVPVIITLTKVGRHYIVDATSEEESQMSSAVSVSVNRHGQICGLTKRG-GAGLDPSVIFD 257
Query: 219 MLNLAKDRIADLIKLQK 235
M+++AK I L
Sbjct: 258 MISVAKHVSQQFISLLD 274
>gi|118792101|ref|XP_320154.3| AGAP012402-PA [Anopheles gambiae str. PEST]
gi|116116739|gb|EAA00202.3| AGAP012402-PA [Anopheles gambiae str. PEST]
Length = 274
Score = 82.6 bits (202), Expect = 5e-14, Method: Composition-based stats.
Identities = 40/249 (16%), Positives = 73/249 (29%), Gaps = 16/249 (6%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+R GR+ ++R ++++ V K A+GS +VK G+T ++ E P + +
Sbjct: 23 IRPDGRELEELRPLAISFDVIKSADGSAIVKVGNTTVVCGIKAELATPNALAPRHGFLVP 82
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGS--RQIIIDCDV 118
S R + +S R + + G + D
Sbjct: 83 NVDLSPVSSPSYRPGPPCDEAQVYSQSVADAISNARCIDLQQLCISPGKLVWCLYCDLVC 142
Query: 119 IQADGGTRTAAITGAWVALHDCLQHMEDCSNKF---------QLSQVLKGHVAAISCGML 169
+ DG AAI A H ++ L + S M+
Sbjct: 143 LDHDGCVLDAAIIALVAAFHTVKLPTIQYNSDTEETEADTSRLLPLTVDCVPVTTSFVMV 202
Query: 170 CGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR--- 226
G I D E+ + G + S + A R
Sbjct: 203 AGRLIADPTTEEEKLASTTLTVTV-SDGKMSFFNQSG-GDPMDSRTLKKCTDSAIKRERS 260
Query: 227 IADLIKLQK 235
+ +I+ +
Sbjct: 261 VKKMIQTMQ 269
>gi|108864299|gb|ABG22460.1| 3' exoribonuclease family domain 1-containing protein, putative,
expressed [Oryza sativa Japonica Group]
gi|215706902|dbj|BAG93362.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215736842|dbj|BAG95771.1| unnamed protein product [Oryza sativa Japonica Group]
gi|218185641|gb|EEC68068.1| hypothetical protein OsI_35924 [Oryza sativa Indica Group]
gi|222615895|gb|EEE52027.1| hypothetical protein OsJ_33746 [Oryza sativa Japonica Group]
Length = 306
Score = 82.6 bits (202), Expect = 5e-14, Method: Composition-based stats.
Identities = 48/257 (18%), Positives = 85/257 (33%), Gaps = 25/257 (9%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+R R+ + R ++ A GS LV+ GDT +L + LE P G I
Sbjct: 39 VRPDARRPAEARPTTVALAAVSSAHGSALVRLGDTAMLASIKLEVMSPSG-EAPDEGSIA 97
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGS---RQIIIDCD 117
E+ M P + ++ + ++ +L + +D
Sbjct: 98 VEFHMPPICSPLVRPGRPAEVAPVISKNLEDILMSSGMLNLKELCLISGKASWLAYLDVY 157
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCS--------------------NKFQLSQVL 157
+ ADG AA+ A A + N+ + +
Sbjct: 158 CLNADGSLFDAALISAVAAFTHLEIPLVSVGDDGRVFTVGGNEGKAKYELVNREKRKLTI 217
Query: 158 KGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFF 217
+++C + + D E+S I+ V+ S IV +Q T S
Sbjct: 218 TNVPFSLTCALHKDNVLADPTAEEESIIETSVTIVLDSSDQIVSIQKPGGAVT-SMTTIK 276
Query: 218 AMLNLAKDRIADLIKLQ 234
++LAKDR L ++
Sbjct: 277 ECISLAKDRRRKLREIL 293
>gi|322788559|gb|EFZ14187.1| hypothetical protein SINV_07329 [Solenopsis invicta]
Length = 292
Score = 82.2 bits (201), Expect = 5e-14, Method: Composition-based stats.
Identities = 35/258 (13%), Positives = 77/258 (29%), Gaps = 18/258 (6%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGD-THLLTTATLEEKVPMWIRNTKHGWI 59
+R GR + Q R + + ++ K+A GS ++ G+ T +L +E P R +
Sbjct: 22 LRNDGRSKYQYRPLEIETKLMKHAHGSARLRVGNITDVLVGVKVEIDTPYAERPHEGKLD 81
Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRA--LRSVVDLSALGSRQIIIDCD 117
+ K + I A L+ + + ++ +D
Sbjct: 82 FFVDCSANATPAFEGKGGDDLATEISNVLSIAYQTPNAFDLKQLCIIPYKKCWKMYVDIL 141
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHME-------DCSNKFQLSQVLKG-------HVAA 163
++Q G A AL++ + +
Sbjct: 142 ILQCGGNLFDAVGAAVKAALYNTEIPRVITATLDGGEPDIQVSDDPYDCIKLDVTNYPLV 201
Query: 164 ISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLA 223
++ + ++D E+S +G + V + M+ +
Sbjct: 202 VTVCKIGDNFVIDPTSEEESCSTASILISAMPNGKVTSVVKLGYGSLLP-STLIKMMKVG 260
Query: 224 KDRIADLIKLQKDVISNE 241
KD L + + + +E
Sbjct: 261 KDISLKLNEAVMNKLKDE 278
>gi|62955139|ref|NP_001017585.1| exosome complex exonuclease RRP42 [Danio rerio]
gi|62531183|gb|AAH92997.1| Zgc:110717 [Danio rerio]
Length = 291
Score = 82.2 bits (201), Expect = 5e-14, Method: Composition-based stats.
Identities = 40/258 (15%), Positives = 75/258 (29%), Gaps = 19/258 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+RL GR R + + V +GS + G T +L E P + G++
Sbjct: 22 LRLDGRGCEDYRHMEIETDVVSNTDGSAKISLGHTDVLVGIKAEIGKPRPMVP-DEGYLE 80
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGR---ALRSVVDLSALGSRQIIIDCD 117
+T R + + R LRS+ + +D
Sbjct: 81 FFVDCSANATPEFEGRGGEELGVELSNTLYKVFNNRHSLDLRSLCICPGENCWVLYVDVL 140
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQ--------------LSQVLKGHVAA 163
++Q DG A AL + S + + ++
Sbjct: 141 LLQCDGNLFDAISIAIKAALFNTRIPKVHISEDEEGGKEIELSDDPFDCMRLNVENVPCI 200
Query: 164 ISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLA 223
++ + +VD E + +T +G + V+ + + F M
Sbjct: 201 VTLCKIGHRHVVDATLQEKACSVASLLIAVTHTGMVTCVRKMG-GGSLDPESIFEMTEAG 259
Query: 224 KDRIADLIKLQKDVISNE 241
K L D++ E
Sbjct: 260 KRVGKSLHAPLMDLLQKE 277
>gi|317029576|ref|XP_001391907.2| exosome complex endonuclease 1 [Aspergillus niger CBS 513.88]
Length = 269
Score = 82.2 bits (201), Expect = 5e-14, Method: Composition-based stats.
Identities = 39/255 (15%), Positives = 81/255 (31%), Gaps = 18/255 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+RL GR+ N++R + + + GS + G+T +L + +
Sbjct: 14 LRLDGRRWNELRLLQAQISTNPASSGSSYLAMGNTAILCSVHGPAEGRRGDATGGAAGSA 73
Query: 61 A-----EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115
+ + + +R +R S +Q + ++ A +S + I I
Sbjct: 74 GAVVEVDVNVAGFAGVDRKRRAGGSDKQS---SRVATILRSAFQSHLHTHLYPHSTISIH 130
Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLK----GHVAAISCGMLCG 171
V+ +DG AA+ +AL D M + L
Sbjct: 131 VSVLSSDGSLLAAAVNACTLALVDAGIPMPGLLCGCTSGMSGSASTPRDPNNDTLDPLLD 190
Query: 172 YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDH------FFAMLNLAKD 225
+ + T+ + ++ I E + + A + D ML + D
Sbjct: 191 LSLPEEQELPFLTVGTTTAVPVGEAAMINEDEDEMKVAMLTMDSKVHCTYVETMLAVGID 250
Query: 226 RIADLIKLQKDVISN 240
+ ++ + VI
Sbjct: 251 GCKQIREILEGVIKK 265
>gi|159490978|ref|XP_001703450.1| 3'-5' exoribonuclease PH component of the exosome [Chlamydomonas
reinhardtii]
gi|158280374|gb|EDP06132.1| 3'-5' exoribonuclease PH component of the exosome [Chlamydomonas
reinhardtii]
Length = 296
Score = 82.2 bits (201), Expect = 6e-14, Method: Composition-based stats.
Identities = 41/265 (15%), Positives = 82/265 (30%), Gaps = 34/265 (12%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+RL GR+ N MR+ + SC V G T ++ + + P + G +
Sbjct: 26 VRLDGRRPNDMRKPKFQFSLDDR---SCTVAQGSTRVMAVVSAALEAP-YPDRPSEGPLR 81
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRS---------VVDLSALGSRQ 111
P ++ G+ G + ++ R+I R LR V +
Sbjct: 82 FNVEFSPMASPAFEP-----GKPGEDAIQVARLIERGLRQSGAVDQEALWVGAGRVRVWA 136
Query: 112 IIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG 171
+ +DC V+ G A AL + + + ++ +
Sbjct: 137 LRVDCHVLDHGGNLLDCCFLAALAALMAFRKPEVEVGGESGSEIIVHPPEVREPVPLTIH 196
Query: 172 YPIVDLDYGEDSTIDVDA---------------NFVMTDSGHIVEVQGSAERATFSQDHF 216
+ V + + D+ VM + + V A+ S + F
Sbjct: 197 HLPVAVTFALFQAGDMLVADPTWKEEAAAAGSCTVVMNPAQEVCCVHK-ADGIGLSPEQF 255
Query: 217 FAMLNLAKDRIADLIKLQKDVISNE 241
+ LA + +++ K +
Sbjct: 256 MRCVRLAGRQAEEVVAGLKKALEGH 280
>gi|307206575|gb|EFN84575.1| Exosome complex exonuclease RRP42 [Harpegnathos saltator]
Length = 296
Score = 82.2 bits (201), Expect = 6e-14, Method: Composition-based stats.
Identities = 37/258 (14%), Positives = 77/258 (29%), Gaps = 19/258 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
R GRQ+ + R + + R+ GS ++ G+T +L +E P + + G +
Sbjct: 27 FRNDGRQKYEYRSLEIETRLMPQTNGSARLRIGNTDVLVGVKVEIDTPHANKP-EEGKLD 85
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQE---IQRMIGRALRSVVDLSALGSRQIIIDCD 117
+T + + + L+ + L ++ +D
Sbjct: 86 FFVDCSANATPAFEGKGGEDLATEISNLLSLAYRTPYAFDLKELCILPHKKCWKMYVDIL 145
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNK--------------FQLSQVLKGHVAA 163
++Q G A AL++ + + + +
Sbjct: 146 ILQCGGNLFDAVGAAVKAALYNTEIPRVVTAMLDGNEPDVKLSDDLYDCIKLNVTNYPVV 205
Query: 164 ISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLA 223
I+ + +VD E+S + +G I V A+ ML +
Sbjct: 206 ITVCKIGDNCVVDPTPEEESCSVASLIMSVMPNGKITSVVKIGY-ASLQPVTLIKMLEVG 264
Query: 224 KDRIADLIKLQKDVISNE 241
K L + + E
Sbjct: 265 KSVALRLNQALLKGLQEE 282
>gi|225430430|ref|XP_002285435.1| PREDICTED: hypothetical protein [Vitis vinifera]
gi|296082105|emb|CBI21110.3| unnamed protein product [Vitis vinifera]
Length = 287
Score = 82.2 bits (201), Expect = 6e-14, Method: Composition-based stats.
Identities = 42/261 (16%), Positives = 77/261 (29%), Gaps = 24/261 (9%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+R GR+ R ++ V A GS V+ G T ++ + E P + G +
Sbjct: 20 LRTDGRRRLTYRPFNVETGVIPQANGSARVRLGGTDVIASVKAELGKPSPSQP-DKGKVN 78
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEI--------QRMIGRALRSVVDLSALGSRQI 112
P + R G L S+V + +
Sbjct: 79 IYVDCSPTAAPMFEGRGGEELSTELSGALQHCLLGGKSGAGAGIDLSSLVVVEGKVCWDL 138
Query: 113 IIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGH------------ 160
ID V+ +DG A AL + + + + +
Sbjct: 139 YIDGLVVSSDGNLLDALGAAIKAALTNTGIPKVEVAVGASGDGLPEVDISDDEYLQFDTS 198
Query: 161 --VAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFA 218
++ + + IVD E+S + + ++ G I + A
Sbjct: 199 GVPVIVTLTKVGRHYIVDATLEEESQMSSAVSVSVSGQGRICGLIKRG-GAGLDPSVILD 257
Query: 219 MLNLAKDRIADLIKLQKDVIS 239
M+++AK L+ IS
Sbjct: 258 MISVAKHVSEQLMNKLDSEIS 278
>gi|213983243|ref|NP_001135527.1| hypothetical protein LOC100216070 [Xenopus (Silurana) tropicalis]
gi|156229972|gb|AAI52124.1| Zgc:110717 protein [Danio rerio]
gi|195539973|gb|AAI67984.1| Unknown (protein for MGC:180975) [Xenopus (Silurana) tropicalis]
Length = 291
Score = 82.2 bits (201), Expect = 6e-14, Method: Composition-based stats.
Identities = 40/258 (15%), Positives = 75/258 (29%), Gaps = 19/258 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+RL GR R + + V +GS + G T +L E P + G++
Sbjct: 22 LRLDGRGCEDYRHMEIETDVVSNTDGSAKISLGHTDVLVGIKAEIGKPRPMVP-NEGYLE 80
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGR---ALRSVVDLSALGSRQIIIDCD 117
+T R + + R LRS+ + +D
Sbjct: 81 FFVDCSANATPEFEGRGGEELGVELSNTLYKVFNNRHSLDLRSLCICPGENCWVLYVDVL 140
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQ--------------LSQVLKGHVAA 163
++Q DG A AL + S + + ++
Sbjct: 141 LLQCDGNLFDAISIAIKAALFNTRIPKVHISEDEEGGKEIELSDDPFDCMRLNVENVPCI 200
Query: 164 ISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLA 223
++ + +VD E + +T +G + V+ + + F M
Sbjct: 201 VTLCKIGHRHVVDATLQEKACSVASLLIAVTHTGMVTCVRKMG-GGSLDPESIFEMTEAG 259
Query: 224 KDRIADLIKLQKDVISNE 241
K L D++ E
Sbjct: 260 KRVGKSLHAPLMDLLQKE 277
>gi|3341558|emb|CAA13123.1| z11f [Vibrio cholerae]
Length = 138
Score = 82.2 bits (201), Expect = 6e-14, Method: Composition-based stats.
Identities = 66/138 (47%), Positives = 88/138 (63%), Gaps = 2/138 (1%)
Query: 101 VVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGH 160
+VDL A+G I +DCDVIQADGGTRTA+ITGA VAL D H+ +KGH
Sbjct: 1 MVDLEAMGEIMITVDCDVIQADGGTRTASITGASVALADAFAHLIAK--GQLKKNPMKGH 58
Query: 161 VAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAML 220
VAA+S G+L + DL+Y EDS D D N VMT+ G ++E+QG+AE FS + +L
Sbjct: 59 VAAVSVGILGEDVLCDLEYVEDSAADTDMNVVMTEEGKMIEIQGTAEGEPFSHEQLLELL 118
Query: 221 NLAKDRIADLIKLQKDVI 238
+AK IAD++ +QK +
Sbjct: 119 AVAKKGIADIVAVQKASL 136
>gi|331233354|ref|XP_003329338.1| hypothetical protein PGTG_10390 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|309308328|gb|EFP84919.1| hypothetical protein PGTG_10390 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 324
Score = 82.2 bits (201), Expect = 6e-14, Method: Composition-based stats.
Identities = 33/242 (13%), Positives = 69/242 (28%), Gaps = 14/242 (5%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R GR + R I + V A GSC ++ G++ ++ + ++ +
Sbjct: 94 RADGRIHSDSRPICIKVGVISQANGSCYIESGNSKVICAVYGPKPRSSLSNSSSLSPLVI 153
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSV-VDLSALGSRQIIIDCDVIQ 120
P GG + ++ +AL + +S ++ I+
Sbjct: 154 SLRFAPFC---MAGGRMAPTALGGVETTVSQLTQQALMPSLLPMSDSSIVEVHINVLEWD 210
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
+ + + +AL L+ + ++ + I DL
Sbjct: 211 SPLSP-GPCVLASSIALASAGIPTVGLVIPSTLALSKELYLDPTATEAESASAIFDLASI 269
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
F T + A D F L+L K + L + +
Sbjct: 270 PAMGTVTHVGFRSTTDW---------KSAPIGNDTFDRCLDLCKSNAELIHGLAAAALKD 320
Query: 241 EV 242
+
Sbjct: 321 HL 322
>gi|218185968|gb|EEC68395.1| hypothetical protein OsI_36554 [Oryza sativa Indica Group]
Length = 485
Score = 82.2 bits (201), Expect = 6e-14, Method: Composition-based stats.
Identities = 25/133 (18%), Positives = 42/133 (31%), Gaps = 4/133 (3%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
R+ GR+++ +R + + V GS L G+T L TATL + + + K
Sbjct: 288 RIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQNLDELMGEKTD 347
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
Y P S G RE + Q+ R + +
Sbjct: 348 SFLFHYNFPPYSVGETGMREIDPKKAEVALQQRYDKADRGQWGWNIVEFYLGKISEKTLM 407
Query: 118 VIQADGGTRTAAI 130
T ++
Sbjct: 408 ERLKADATDNTSL 420
Score = 48.3 bits (113), Expect = 9e-04, Method: Composition-based stats.
Identities = 13/95 (13%), Positives = 33/95 (34%), Gaps = 3/95 (3%)
Query: 146 DCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGS 205
+ G + A G + +++ E +D T +G ++ V+
Sbjct: 107 ASAALSLSGIPFNGPIGAARVGYINDQYVLNPTTDELKESRLDLVVAGT-AGAVLMVE-- 163
Query: 206 AERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
+E S+D + D+ +I+ +++
Sbjct: 164 SEADVLSEDQMLGAVVFGHDQQQVVIENINALVAE 198
>gi|321262691|ref|XP_003196064.1| 3'-to-5' phosphorolytic exoribonuclease; Ski6p [Cryptococcus gattii
WM276]
gi|317462539|gb|ADV24277.1| 3'-to-5' phosphorolytic exoribonuclease, putative; Ski6p
[Cryptococcus gattii WM276]
Length = 262
Score = 81.8 bits (200), Expect = 7e-14, Method: Composition-based stats.
Identities = 51/241 (21%), Positives = 88/241 (36%), Gaps = 21/241 (8%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVP-MWIRNTKHGWI 59
+R R+ ++R S ++GS G T ++ + + + + +
Sbjct: 14 LRQDARRPYELRSTSFQLSTHPSSDGSSTATQGLTTVVVSVFGPREPRNRSLASHDRAVV 73
Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119
+ E G++P + G +R R QEI I + V+ +I I V+
Sbjct: 74 SVEVGVVPWAAGAGARRTRGDKR----LQEIGAAIRQTFEPVIMTHLYPRSEIAIHVQVL 129
Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179
ADGG +I +AL D + D V++IS G+ P++DL
Sbjct: 130 SADGGILPTSINATTLALIDAGISLLDY-------------VSSISIGLHLLQPLLDLSQ 176
Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
E+S + + SG I Q D F ML L + L + V+
Sbjct: 177 PEESDLPSLVIASLPSSGKITLAQM---ETRLHVDRFEEMLTLGVEACKVLKEEMDGVVK 233
Query: 240 N 240
+
Sbjct: 234 D 234
>gi|198424385|ref|XP_002127184.1| PREDICTED: similar to Exosome complex exonuclease RRP42 (Ribosomal
RNA-processing protein 42) (Exosome component 7) (p8)
[Ciona intestinalis]
Length = 290
Score = 81.8 bits (200), Expect = 7e-14, Method: Composition-based stats.
Identities = 35/258 (13%), Positives = 71/258 (27%), Gaps = 19/258 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR GR R I + V GS ++ G + LL +E P + G I
Sbjct: 22 MRNDGRSCEDYRHIEVETGVVSNTHGSSRLRLGSSELLVGVKVELGSPD-PKAPNEGLIH 80
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQII---IDCD 117
P + + R + ++ + L + +Q +D
Sbjct: 81 FHVDCSPNADPSFQGRGGEDLSANISCILTRIYCNKSSIDLNTLGIIPHKQCWVVHVDVL 140
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNK--------------FQLSQVLKGHVAA 163
+++ G A ALH+ ++
Sbjct: 141 ILECGGNLLDAVSIAVKAALHNTGVPNIQVTDGDEGTQEISLPDDPNDVKFINTVNAPVL 200
Query: 164 ISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLA 223
++ + +VD E+ + +T G ++ + + M+
Sbjct: 201 VTISKVGSRHVVDASSEEELCCNASLVMGVTKRGRTTGMRKMG-GGSLDPESIPEMIETG 259
Query: 224 KDRIADLIKLQKDVISNE 241
K+ L ++ E
Sbjct: 260 KNIGRQLHISLDKLLKTE 277
>gi|221057472|ref|XP_002261244.1| exosome complex exonuclease [Plasmodium knowlesi strain H]
gi|194247249|emb|CAQ40649.1| exosome complex exonuclease, putative [Plasmodium knowlesi strain
H]
Length = 514
Score = 81.8 bits (200), Expect = 7e-14, Method: Composition-based stats.
Identities = 32/255 (12%), Positives = 72/255 (28%), Gaps = 19/255 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+RL GR R IS+ G+ V G T ++ T E V + + G I
Sbjct: 19 LRLDGRNFEDSRNISI---YFFGEYGNVEVSIGHTKVICKITSEI-VKPFDKRPNEGIIK 74
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
+ + N + + + E L + + ++I
Sbjct: 75 VNLDIDSFTNVNDNSQISDECLEIKNLIERILKSSNLLNFESLCIIPHKKVWCLLVNIIV 134
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQ-------------VLKGHVAAISCG 167
+ + + + + +
Sbjct: 135 VENDGNLYDSCFLSAYSGLVHYRNNEVTVDSIGNIFIEQGETNYTPLSIHNTPILTTFAY 194
Query: 168 MLCGYPIV-DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226
C + D E+ + + + +G +V + + S + + LAK R
Sbjct: 195 FNCEDICLIDPSIQEEEFMSSKLSVALNKNGKLVSILKPG-GSPISYEKILEAIELAKKR 253
Query: 227 IADLIKLQKDVISNE 241
+ ++K+ +D + +
Sbjct: 254 VKSILKILEDALEED 268
>gi|291393541|ref|XP_002713440.1| PREDICTED: exosome component 7 [Oryctolagus cuniculus]
Length = 290
Score = 81.8 bits (200), Expect = 7e-14, Method: Composition-based stats.
Identities = 33/257 (12%), Positives = 69/257 (26%), Gaps = 18/257 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+R+ GR R + + V GS VK G T +L E P + G++
Sbjct: 22 LRVDGRGCEDYRCVEVETDVVSNTSGSARVKLGHTDILVGVKAEMGTPK-LEKPDEGYVE 80
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQI--IIDCDV 118
+T R + + +L + +D +
Sbjct: 81 FFVDCSANATPEFEGRGGDDLGTEIANTLARIFNKGSLDLKSLCISPREHCWVLYVDVLL 140
Query: 119 IQADGGTRTAAITGAWVALHDCLQHMED-------CSNKFQLSQVLKGH-------VAAI 164
++ G A AL + I
Sbjct: 141 LECGGNLFDAISIAVKAALFNTRIPRVHVLEDEEGSKEIELSDDPYDCIQLSVENVPCII 200
Query: 165 SCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAK 224
+ + +VD E++ +T+ G + ++ + + + F M+ +
Sbjct: 201 TLCKIGYRHVVDATLQEEACSLASLLVSVTNKGVVTCMRKVGK-GSLDPESIFEMMETGE 259
Query: 225 DRIADLIKLQKDVISNE 241
L + ++ E
Sbjct: 260 RVGKALHSSLQSLLHKE 276
>gi|332020945|gb|EGI61339.1| Exosome complex exonuclease RRP42 [Acromyrmex echinatior]
Length = 292
Score = 81.8 bits (200), Expect = 7e-14, Method: Composition-based stats.
Identities = 37/258 (14%), Positives = 74/258 (28%), Gaps = 18/258 (6%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGD-THLLTTATLEEKVPMWIRNTKHGWI 59
+R GR Q R I + ++ K+ GS ++ G+ T +L LE P R +
Sbjct: 22 LRNDGRSRYQYRPIEIETKLMKHTHGSARLRIGNITDVLVGVKLEIDTPYAERPEEGKLE 81
Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRA--LRSVVDLSALGSRQIIIDCD 117
+ K + + A L+ + + +I +D
Sbjct: 82 FFVDCSANATPAFEGKGGDDLATEISNVLSMAYQTPDAFDLKQLCIIPHQKCWKIYVDIL 141
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHME-------DCSNKFQLSQVLKG-------HVAA 163
++Q G A AL++ + +
Sbjct: 142 ILQCGGNLFDAVGAAVKAALYNTEIPRVIIAILDGGEPDIQISDDPYDCIKLDVTNYPVV 201
Query: 164 ISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLA 223
++ + ++D E+S + +G + V + ML +
Sbjct: 202 LTVCKIGDNFVIDPTSEEESCSTASILMSVMPNGKVTSVVKLGYGSLLP-STLIKMLQVG 260
Query: 224 KDRIADLIKLQKDVISNE 241
KD L + + E
Sbjct: 261 KDISFKLNEALMKGLEEE 278
>gi|321469683|gb|EFX80662.1| hypothetical protein DAPPUDRAFT_50975 [Daphnia pulex]
Length = 227
Score = 81.8 bits (200), Expect = 7e-14, Method: Composition-based stats.
Identities = 41/227 (18%), Positives = 76/227 (33%), Gaps = 13/227 (5%)
Query: 16 LTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGNRVK 75
L + A+GS ++ G+T L+ +V + +G + E+ P S R
Sbjct: 1 LKTGIISQAKGSAYIEQGNTKLVCGVYGPREVQKKSDFSLNGQLFCEFKFAPFSCQKRRG 60
Query: 76 REAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWV 135
+ Q + ++ AL + V L Q+ ++ VI+ DG AA+T A +
Sbjct: 61 HQ-----QDNEELVLSGLLREALEAAVCLHKFPKAQVEVNVMVIENDGSPLAAALTCASL 115
Query: 136 ALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTD 195
AL M D + Q+ K + + + D M
Sbjct: 116 ALASASIPMYDLMIGTSVRQIPKLFLLDPTKDEEWQ-----PELNHDENNSNLTVGFMPS 170
Query: 196 SGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNEV 242
+ + T + ML LA + + + + + V
Sbjct: 171 THQVSAYVHEGVSKT---EDLEQMLKLATEYCLKVQPVVQLCLKETV 214
>gi|194221417|ref|XP_001496279.2| PREDICTED: similar to Exosome complex exonuclease RRP42 (Ribosomal
RNA-processing protein 42) (Exosome component 7) (p8)
[Equus caballus]
Length = 535
Score = 81.8 bits (200), Expect = 8e-14, Method: Composition-based stats.
Identities = 34/258 (13%), Positives = 74/258 (28%), Gaps = 19/258 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+R+ GR R + + V GS VK G T +L E P + G++
Sbjct: 22 LRVDGRGCEDYRCVDVETDVVSNTSGSARVKLGHTDILVGVKAEMGTPK-LEKPNEGYLE 80
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRA---LRSVVDLSALGSRQIIIDCD 117
+T R + + ++ L+S+ + +D
Sbjct: 81 FFVDCSANATPEFEGRGGDDLGTEIANTLYRIFNNKSSVDLKSLCISPREHCWILYVDVL 140
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMED-------CSNKFQLSQVLKGH-------VAA 163
+++ G A AL + +
Sbjct: 141 LLECGGNLFDAISIAVKAALFNTRIPRVRVLEDEEGSKDIELSDDPYDCIRLSVENVPCI 200
Query: 164 ISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLA 223
++ + +VD E++ +T G + ++ + + + F M+
Sbjct: 201 VTLCKIGYRHVVDATLQEEACSLASLLVSVTSKGVVTCMRKVGK-GSLDPESIFEMMETG 259
Query: 224 KDRIADLIKLQKDVISNE 241
K L ++++ E
Sbjct: 260 KRVGKVLHTSLQNILHKE 277
>gi|224054532|ref|XP_002298307.1| predicted protein [Populus trichocarpa]
gi|222845565|gb|EEE83112.1| predicted protein [Populus trichocarpa]
Length = 382
Score = 81.8 bits (200), Expect = 8e-14, Method: Composition-based stats.
Identities = 45/257 (17%), Positives = 82/257 (31%), Gaps = 21/257 (8%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+R+ GR + R+I++ + A GS V+ G TH++ T + V + G +
Sbjct: 27 LRIDGRNPLEYRKITIKFGR-RVAYGSSEVQLGQTHVMGFVTGQL-VQPYQDRRNEGMLL 84
Query: 61 AEYGMLPRSTGNRVKREAVSGR-QGGRSQEIQRMIGRALRSVVDLSALGS--RQIIIDCD 117
P + + + GR + RA+ + G I ID
Sbjct: 85 IFTEFSPMADPSFEPGRPGESAVELGRIVDRGLRESRAVDTESLCVLSGKLVWAIRIDLH 144
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHM-------------EDCSNKFQLSQVLKGHVAAI 164
++ G AA A AL + + L ++ AI
Sbjct: 145 ILDNGGNLVDAANIAALAALLTFRRPECTLGGDDGQEVTVHPPEEREPLPLIVHHLPIAI 204
Query: 165 SCGM--LCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNL 222
+ G +VD + E++ + + G I +Q + Q L L
Sbjct: 205 TFAFLGSEGKMVVDPTHSEEAVMGGRMTVTVNAIGDICSIQKAG-GEGVPQSVIMHCLQL 263
Query: 223 AKDRIADLIKLQKDVIS 239
A + K + +
Sbjct: 264 ASMSAESITKKINNAVE 280
>gi|328871066|gb|EGG19437.1| hypothetical protein DFA_00014 [Dictyostelium fasciculatum]
Length = 294
Score = 81.8 bits (200), Expect = 8e-14, Method: Composition-based stats.
Identities = 36/262 (13%), Positives = 70/262 (26%), Gaps = 26/262 (9%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE--------EKVPMWIR 52
+R GR + R+I+++ +GS VK G+T ++ E +
Sbjct: 21 VRPDGRGLDCFRKINISTGSIMTTDGSSFVKIGNTSVIAGVKAEVALTPTQSDNSISSNN 80
Query: 53 NTKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSV-VDLSALGSRQ 111
N + + M P + + SQ + + + G
Sbjct: 81 NNNNNKMFVNVEMGPICSNIFSSSKPSEKAMSLCSQLNSLVNRLEINDKELYFDDQGKYS 140
Query: 112 I--IIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHV-------- 161
ID + +G A + AL +
Sbjct: 141 WYLYIDLYCLDYNGNLMDACVLAIMSALKNVKLPKGIVVESSASEAPQLFKDTEQPMRSL 200
Query: 162 ------AAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDH 215
+ +L Y + D E+ + D I + + + S+
Sbjct: 201 NIGTYLIPQTFVLLNDYLLTDPSLEEEKLSSGTISITFNDRFEICTLLYTG-ITSISEKI 259
Query: 216 FFAMLNLAKDRIADLIKLQKDV 237
L K R ++I L +
Sbjct: 260 LEQCLEKTKKRSTEIINLIDNC 281
>gi|289622237|emb|CBI51415.1| unnamed protein product [Sordaria macrospora]
Length = 273
Score = 81.8 bits (200), Expect = 8e-14, Method: Composition-based stats.
Identities = 41/247 (16%), Positives = 74/247 (29%), Gaps = 14/247 (5%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW------IRNT 54
+R+ GR+ N++R I R A+GS ++ G T ++ +
Sbjct: 13 LRVDGRRWNELRRIHAQIRTQAAADGSSYLEMGHTKVMCVVNGPSEPGPRRGATSGGGGG 72
Query: 55 KHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIII 114
AE + G GR E+Q I +AL + + I I
Sbjct: 73 GGQSKNAEVAVNIVIAGFSSVDRKRRGRGDKHILELQSTISQALAASLHTHLFPHSTINI 132
Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPI 174
V+ DG A I A +A D M D A +
Sbjct: 133 SLHVLSQDGSLLAALINAATLACVDAGIPMTDY---VAACTAGSTSTYAANDEGADPLLD 189
Query: 175 VDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
++ ++ A +D ++ + ML + D + ++
Sbjct: 190 MNHQEEQELPGLTVATLGDSDRVAVLVCES-----RVQVSRLEGMLAVGVDGCKQVREIL 244
Query: 235 KDVISNE 241
V+ +
Sbjct: 245 DRVVREK 251
>gi|255943151|ref|XP_002562344.1| Pc18g05170 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211587077|emb|CAP94741.1| Pc18g05170 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 265
Score = 81.8 bits (200), Expect = 8e-14, Method: Composition-based stats.
Identities = 40/253 (15%), Positives = 82/253 (32%), Gaps = 19/253 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE---EKVPMWIRNTKHG 57
+RL GR+ N++R + + + GS + G+T ++ + + + H
Sbjct: 14 LRLDGRRWNELRLLQAQISTNPASSGSSYLSMGNTSIMCSVHGPAEGRRGDGGSAGSGHA 73
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
+ + + + +R +R S RQ I + A +S + I I
Sbjct: 74 VVEVDVNVAGFAGVDRKRRAGGSDRQS---SRIATTLRSAFQSHLHTYLYPHSTISIHVS 130
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
V+ ADG AA+ +AL D M + G + +
Sbjct: 131 VLSADGSLLAAALNACTLALVDAGIPMPGLLCGCTSG--MSGSASTPRDPRHDELDPLLD 188
Query: 178 DYGEDSTIDVDANFVMT-----DSGHIVEVQGSAERATFSQDH------FFAMLNLAKDR 226
+ T ++ E + + + + + ML + D
Sbjct: 189 LSLPEEQELPSLTVATTTAVPVGENNMDEDEEAMKVCVLTMESKVHATYLETMLAVGIDG 248
Query: 227 IADLIKLQKDVIS 239
+ + +L + VI
Sbjct: 249 CSQIRELLEGVIK 261
>gi|255513310|gb|EET89576.1| 3' exoribonuclease [Candidatus Micrarchaeum acidiphilum ARMAN-2]
Length = 258
Score = 81.4 bits (199), Expect = 9e-14, Method: Composition-based stats.
Identities = 43/245 (17%), Positives = 90/245 (36%), Gaps = 19/245 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R R R++ ++R V +AEGS G T +L L + ++ G +
Sbjct: 21 REDSRGSMDFRDLKISRGVIDHAEGSAQADLGATKVLAGVKL-VQEDVYEDTPDQGNLVV 79
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDL-------SALGSRQIII 114
+LP + +G + E+ R++ RA+R+ + + + +
Sbjct: 80 SAELLPLAAAE-----YETGPPSPEAIELGRVVDRAIRAGNCIDLKSLLLEEGKAWTVYV 134
Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSN----KFQLSQVLKGHVAAISCGMLC 170
D V+ DG A++ A A+ D K + + V++ + +
Sbjct: 135 DVYVLNFDGNLFDASVIAAMSAILDARVPEYADGKADYTKREKKLKVDNVVSSTTFAKIG 194
Query: 171 GYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADL 230
++D E+ +D TD I +Q +FS + +++ + + A +
Sbjct: 195 KAILLDPTGNEELGMDARLTI-STDGKMIRAMQK-GLAGSFSVEEIESLIAESLKKHAHM 252
Query: 231 IKLQK 235
K +
Sbjct: 253 EKKIR 257
>gi|209882995|ref|XP_002142931.1| 3' exoribonuclease family protein [Cryptosporidium muris RN66]
gi|209558537|gb|EEA08582.1| 3' exoribonuclease family protein, putative [Cryptosporidium muris
RN66]
Length = 250
Score = 81.4 bits (199), Expect = 1e-13, Method: Composition-based stats.
Identities = 46/243 (18%), Positives = 89/243 (36%), Gaps = 21/243 (8%)
Query: 1 MRLSGRQENQMREISLTR--RVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW 58
R+ GR+ N++R IS S ++ S + G T L+T+ + +
Sbjct: 16 FRIDGRRFNEIRRISCKISNGTSNLSDSSVYYEQGQTKLITSICGPIPLLNSSSQSG-IQ 74
Query: 59 ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDV 118
+ + M P T +R K G+ E +I R S + QIII+ +V
Sbjct: 75 LHCNFRMSPFCTPDRRK----RGKNDRFCTENSLIITRTFESAIS-EIYVKSQIIININV 129
Query: 119 IQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLD 178
++ADGG R+AAI +AL + M+D + + + I
Sbjct: 130 LEADGGVRSAAINATSLALANAGIGMKDLVISSTIGLYGRIPLYDIVQA----------- 178
Query: 179 YGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
D + + + + +I + +D +L + + K+ ++++
Sbjct: 179 -EFDVLKTIMSFAIYSTDENIAPITMELNTK-VDEDILNLLLEHSAAACKHISKILRNIL 236
Query: 239 SNE 241
Sbjct: 237 RQH 239
>gi|66824935|ref|XP_645822.1| hypothetical protein DDB_G0271100 [Dictyostelium discoideum AX4]
gi|60473944|gb|EAL71882.1| hypothetical protein DDB_G0271100 [Dictyostelium discoideum AX4]
Length = 526
Score = 81.4 bits (199), Expect = 1e-13, Method: Composition-based stats.
Identities = 45/254 (17%), Positives = 79/254 (31%), Gaps = 17/254 (6%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R+ GR N MR I + + G V+ G T + T T + P R + +I
Sbjct: 22 RIDGRGVNDMRAIKIEFG---KSYGVVEVQLGKTRVFTAITCDIVEPKPERPNEGFYIFN 78
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALG--SRQIIIDCDVI 119
S V + + GR E RA+ + G I I V+
Sbjct: 79 TDISPMSSVSVNVNQPNPMESELGRIIEKGLKDSRAIDTEALCIISGSKVWSIKIAIHVL 138
Query: 120 QADGGTRTAAITGAWVALHDCLQHM----------EDCSNKFQLSQVLKGHVAAISCGML 169
G A AL + + + + +I+ G
Sbjct: 139 DDCGNLLDCASISVMTALIHFRKPDVTVIGNDATIHSLDEREPVPLSIHHTPISITFGFF 198
Query: 170 CGYPIV-DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIA 228
++ D D E+S +D +F + I V + + D +A + A
Sbjct: 199 PNEIMIVDPDTKEESVMDGKLSFFVNIHKEICGVSKGG-GTSTTIDQVLKCSKIAVIKAA 257
Query: 229 DLIKLQKDVISNEV 242
++ ++ I +
Sbjct: 258 EITLQIRESIHENL 271
>gi|261332827|emb|CBH15822.1| RRP41p homologue, putative [Trypanosoma brucei gambiense DAL972]
Length = 252
Score = 81.4 bits (199), Expect = 1e-13, Method: Composition-based stats.
Identities = 41/242 (16%), Positives = 86/242 (35%), Gaps = 18/242 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+RL GR+ N+ R ++L +G C V G +H+ T +V + +
Sbjct: 13 LRLDGRRPNEPRRLALEFGKISGCDGCCTVVSGLSHVCATVYGPREVSNRLDGKYNEVTI 72
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
++ G R + + R + R++ V LS + QI I +V++
Sbjct: 73 TCDVVVAAFAGERRREQQRYSRLSEDISASVLDVARSV---VLLSQYPNSQIHICIEVLK 129
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
DG + A I A +AL D M D + + V ++ +
Sbjct: 130 QDGSDKAACINAACLALIDASIAMRDVVYTQTVGLIEGFDVVDLTTEEIHS--------- 180
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK-LQKDVIS 239
+ D +IV ++ ++ + + ++ +A+ D+ + + +
Sbjct: 181 --QCPSICITVQGHDPTNIVWMESNSR---LAPEVITRLVKVAQKASTDVFETALRGPLE 235
Query: 240 NE 241
Sbjct: 236 EH 237
>gi|15232342|ref|NP_191609.1| CER7 (ECERIFERUM 7); 3'-5'-exoribonuclease/ RNA binding
[Arabidopsis thaliana]
gi|42572741|ref|NP_974466.1| CER7 (ECERIFERUM 7); 3'-5'-exoribonuclease/ RNA binding
[Arabidopsis thaliana]
gi|7287998|emb|CAB81836.1| nucleolar autoantigen-like protein [Arabidopsis thaliana]
gi|28393589|gb|AAO42214.1| putative nucleolar autoantigen protein [Arabidopsis thaliana]
gi|28973593|gb|AAO64121.1| putative nucleolar autoantigen protein [Arabidopsis thaliana]
gi|113196170|gb|ABI31441.1| CER7 [Arabidopsis thaliana]
gi|332646547|gb|AEE80068.1| 3'-5'-exoribonuclease CER7 protein [Arabidopsis thaliana]
gi|332646548|gb|AEE80069.1| 3'-5'-exoribonuclease CER7 protein [Arabidopsis thaliana]
gi|332646549|gb|AEE80070.1| 3'-5'-exoribonuclease CER7 protein [Arabidopsis thaliana]
Length = 438
Score = 81.4 bits (199), Expect = 1e-13, Method: Composition-based stats.
Identities = 48/259 (18%), Positives = 87/259 (33%), Gaps = 33/259 (12%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+R+ GR R++++ GS V+ G TH++ T + V + G ++
Sbjct: 27 LRVDGRGLYDYRKLTIKFG---KEYGSSEVQLGQTHVMGFVTAQL-VQPYKDRPNEGSLS 82
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSA--------LGSRQI 112
P + + GR G + E+ R+I R LR + +
Sbjct: 83 IFTEFSPMADPSFEP-----GRPGESAVELGRIIDRGLRESRAVDTESLCVLAGKMVWSV 137
Query: 113 IIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCS-------------NKFQLSQVLKG 159
ID ++ G AA A AL + + L ++
Sbjct: 138 RIDLHILDNGGNLVDAANIAALAALMTFRRPDCTVGGENGQEVIIHPLEEREPLPLIIHH 197
Query: 160 HVAAISCGMLC--GYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFF 217
A + G ++D Y E++ + + +G I +Q E +Q
Sbjct: 198 LPIAFTFGFFNKGNIVVMDPTYVEEAVMCGRMTVTVNANGDICAIQKPGEEG-VNQSVIL 256
Query: 218 AMLNLAKDRIADLIKLQKD 236
L LA R A K+ ++
Sbjct: 257 HCLRLASSRAAATTKIIRE 275
>gi|330791335|ref|XP_003283749.1| hypothetical protein DICPUDRAFT_85962 [Dictyostelium purpureum]
gi|325086372|gb|EGC39763.1| hypothetical protein DICPUDRAFT_85962 [Dictyostelium purpureum]
Length = 233
Score = 81.4 bits (199), Expect = 1e-13, Method: Composition-based stats.
Identities = 42/241 (17%), Positives = 87/241 (36%), Gaps = 21/241 (8%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
RL+GR + Q+R + + + A+GS T +L +V +
Sbjct: 9 RLNGRTQGQLRSMESEQSLLNKADGSAKFSQNKTSVLAAVYGPIEVNSARKEKILK-SYV 67
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
E P +E + ++ A+ SV+ + Q+ + V
Sbjct: 68 EVTFTPALGNT-----------TYLDKEKELLVKNAVESVILTTLHPRTQVSVIIQVYSD 116
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
DG + +I A +AL D M ++ + + + ++ P ++ E
Sbjct: 117 DGSIVSCSINAACLALLDAGIEM--NGLIGSITLMNEDDDEDNNKCLMIVDPDLN---EE 171
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
+++ + ++S +IV S T ++D +F L A+ +I K + N
Sbjct: 172 NNSKAMAIFAFSSNSNNIVM---SKTIGTLTEDQYFECLKAAR-GCDSIIAYMKLAVKNR 227
Query: 242 V 242
+
Sbjct: 228 I 228
>gi|255580609|ref|XP_002531128.1| exosome complex exonuclease rrp45, putative [Ricinus communis]
gi|223529292|gb|EEF31262.1| exosome complex exonuclease rrp45, putative [Ricinus communis]
Length = 463
Score = 81.4 bits (199), Expect = 1e-13, Method: Composition-based stats.
Identities = 47/262 (17%), Positives = 88/262 (33%), Gaps = 33/262 (12%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+R+ GR ++ R++++ +GS V+ G TH++ T + V + G ++
Sbjct: 27 LRIDGRNSHEFRKLTIKFG---REDGSSEVQLGQTHVMGFVT-SQLVQPYRDRPNEGSLS 82
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALG--------SRQI 112
P + + GR G + E+ R+I R LR + I
Sbjct: 83 IFSEFSPMADPSFEP-----GRPGESAVELGRIIDRGLRESRAVDTESLCVLAGKLVWAI 137
Query: 113 IIDCDVIQADGGTRTAAITGAWVALHDCLQHM-------------EDCSNKFQLSQVLKG 159
ID ++ G AA A AL + K L ++
Sbjct: 138 RIDLHILDNGGNLVDAANIAALAALLTFRRPECTLGGEDGQQVIVHPPEVKEPLPLIVHH 197
Query: 160 HVAAISCGML--CGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFF 217
A++ +VD + E++ + + +G I +Q + Q
Sbjct: 198 LPIAVTFAFFSSEHTMVVDPTHNEEAVMTGRMTVTVNANGDICSIQKAGGEGVM-QSRIM 256
Query: 218 AMLNLAKDRIADLIKLQKDVIS 239
L +A + K KD +
Sbjct: 257 HCLRVASRNAESITKKIKDAVE 278
>gi|308322117|gb|ADO28196.1| exosome complex exonuclease rrp42 [Ictalurus furcatus]
Length = 291
Score = 81.4 bits (199), Expect = 1e-13, Method: Composition-based stats.
Identities = 40/258 (15%), Positives = 73/258 (28%), Gaps = 19/258 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+R+ GR R + + V +GS V G T +L E P + G++
Sbjct: 22 LRVDGRGCEDYRHMEIETDVVSNTDGSAKVSLGQTDILVGIKAEIGRPRPMVP-DEGYLE 80
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGR-ALRSVVDLSALGSRQI--IIDCD 117
+T R + + R +L + G +D
Sbjct: 81 FFVDCSANATPEFEGRGGEELGVELSNNLYKVFNNRHSLDLRSLCISPGESCWVLYVDVL 140
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQ--------------LSQVLKGHVAA 163
++Q DG A AL + S + + ++
Sbjct: 141 LLQCDGNLFDAMSIAIKAALFNTRIPKVHISEDEEGGKEIELSDDPYDCMRLNVENVPCI 200
Query: 164 ISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLA 223
++ + +VD E S +T G + V+ + D F M
Sbjct: 201 VTLCKIGHRHVVDATLQEKSCSVASLLISVTHKGTVTCVRKLG-GGSLDPDSIFEMTETG 259
Query: 224 KDRIADLIKLQKDVISNE 241
K L +++ E
Sbjct: 260 KRVGKMLHVPLMELLQKE 277
>gi|296195656|ref|XP_002745482.1| PREDICTED: exosome complex exonuclease RRP45 [Callithrix jacchus]
Length = 440
Score = 81.0 bits (198), Expect = 1e-13, Method: Composition-based stats.
Identities = 45/257 (17%), Positives = 80/257 (31%), Gaps = 24/257 (9%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
RL GRQ R I ++ G C+V+ G T +L + E P + G +
Sbjct: 23 RLDGRQTYDYRNIRISFGTD---YGCCIVELGKTRVLGQVSCELVAPK-LNRATEGILFF 78
Query: 62 EYGMLPRSTGNRVKREAVS-----GRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
+ + R R + I VV + QI +D
Sbjct: 79 NLELSQMAAPAFEPGRQSDLLVKLNRLLERCLRNSKCIDTESLCVVAGEKV--WQIRVDL 136
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMED----------CSNKFQLSQVLKGHVAAISC 166
++ DG AA A VAL + + + + +S
Sbjct: 137 HLLNHDGNIIDAASVAAIVALCHFRRPDVSVQGDEVTLYTPEERDPVPLSIHHMPICVSF 196
Query: 167 GMLCGYPIV--DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAK 224
+ D + E+ +D M I +Q S +D +A
Sbjct: 197 AFFQQGTYLLVDPNEREERVMDGLLVIAMNKHREICTIQSSGGIMLL-KDQVLRCSKIAG 255
Query: 225 DRIADLIKLQKDVISNE 241
++A++ +L + + N+
Sbjct: 256 VKVAEITELIQKALEND 272
>gi|281200843|gb|EFA75059.1| hypothetical protein PPL_11677 [Polysphondylium pallidum PN500]
Length = 233
Score = 81.0 bits (198), Expect = 1e-13, Method: Composition-based stats.
Identities = 39/242 (16%), Positives = 79/242 (32%), Gaps = 28/242 (11%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+R+ R NQ+R I + A+GS ++ +L +V +
Sbjct: 2 VRIDKRNNNQIRSIESELALLNKADGSAKFSLDNSSVLAAIYGPVEVNPRKEKISKATVE 61
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
+ SG Q +++E + +I A+ SV+ I I V
Sbjct: 62 VVF-------------TPDSGNQNYQTKEQESLIRNAIESVIMTMLHPRTLISIIIQVYS 108
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
DG + +I A +AL D S + ++ S G +D
Sbjct: 109 TDGSIVSCSINAACLALLDAGI--------ELNSLIASISLSFNSDG----QIYLDPTMK 156
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
E++ A + ++ ++ S ++ L LA+ ++ + +
Sbjct: 157 EENESKATAIYAFNSQLKLMMIKSSG---IITEQQNQEALQLARSSCERILAYIRTAVKT 213
Query: 241 EV 242
+
Sbjct: 214 RI 215
>gi|218662070|ref|ZP_03518000.1| ribonuclease PH [Rhizobium etli IE4771]
Length = 75
Score = 81.0 bits (198), Expect = 1e-13, Method: Composition-based stats.
Identities = 33/48 (68%), Positives = 40/48 (83%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVP 48
MR SGR+ +QMR++S R SK+AEGSCLVKFGDTH+L TA+LEEK P
Sbjct: 17 MRPSGRKTDQMRKVSFERNFSKHAEGSCLVKFGDTHVLCTASLEEKTP 64
>gi|322490890|emb|CBZ26154.1| putative exosome complex exonuclease rrp41 [Leishmania mexicana
MHOM/GT/2001/U1103]
Length = 246
Score = 81.0 bits (198), Expect = 1e-13, Method: Composition-based stats.
Identities = 38/242 (15%), Positives = 79/242 (32%), Gaps = 18/242 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+RL GR+ + R + + +GSC + G + + + + +
Sbjct: 13 LRLDGRRPREARRMDIAFGTLSACDGSCDITLGQSKVCASVFGPRESLHKQEAKHDKALV 72
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
+ G + R + R++ + LS + QI I +V+Q
Sbjct: 73 TCEVAVAAFAGENRRNPQRRSRLSEDIGAAVVQVARSV---ILLSQYPNSQIHIYIEVLQ 129
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
DG + A I A +AL D M D + + + ++ L V
Sbjct: 130 QDGNEKIACINAACLALIDANVAMRDAVCCIDAGILDEHMLIDLTNDELRSQCPVIAA-- 187
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK-LQKDVIS 239
F D+ +I+ ++ ++ D +L A++ L + + +
Sbjct: 188 ---------AFTGHDTRNIIWLETTSR---LPPDSATRLLKCAEEGATKLFETTMRKALE 235
Query: 240 NE 241
Sbjct: 236 EH 237
>gi|50307027|ref|XP_453491.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|49642625|emb|CAH00587.1| KLLA0D09625p [Kluyveromyces lactis]
Length = 245
Score = 81.0 bits (198), Expect = 1e-13, Method: Composition-based stats.
Identities = 35/243 (14%), Positives = 80/243 (32%), Gaps = 21/243 (8%)
Query: 1 MRLSGRQENQMREISLTRRVSKY-AEGSCLVKFGDTHLLTTATLEEKVPMWIR-NTKHGW 58
+R+ GR+ N++R + + A+GS ++ G+ ++T ++ + NTK
Sbjct: 12 LRVDGRRWNELRSFNCSINTHPNAADGSSYLEQGNNKIITLVAGPQEPSSRSQVNTKQAT 71
Query: 59 ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDV 118
++ + + R K + R+ E Q + R + L I +
Sbjct: 72 LSVTINLTKFAKMERSKSSHKNERRT---LEWQASLVRTFEKNLMLHLYPRTSIDVQVHA 128
Query: 119 IQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLD 178
+Q DGG A + G +AL D M D + + + ++
Sbjct: 129 LQLDGGILGAMLNGITLALIDAGIAMYDFVSGVSVGLYDTTPL-----------LDLNSL 177
Query: 179 YGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
+ ++ ++ V+ D +++ + + L +
Sbjct: 178 EENAMSSVTIGTIGKSEKLSLLMVE-----DKVPLDRLESVMAIGIAGTHRIRDLMDKEL 232
Query: 239 SNE 241
Sbjct: 233 RKH 235
>gi|322703951|gb|EFY95552.1| exosome complex exonuclease RRP41 [Metarhizium anisopliae ARSEF 23]
Length = 273
Score = 81.0 bits (198), Expect = 1e-13, Method: Composition-based stats.
Identities = 50/250 (20%), Positives = 88/250 (35%), Gaps = 22/250 (8%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIR-------- 52
+R+ GR+ N++R + R A+GS + G T ++ T +
Sbjct: 13 LRVDGRRWNELRRLHAQIRTQDAADGSSYFEMGHTKVMCVVTGPSEQQQAQAQAQRRGGQ 72
Query: 53 --NTKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSR 110
I + S+ +R K R R+QEI+ I +AL S V
Sbjct: 73 APGRDAASIIVNVVIAGFSSVDRKK----RARSDKRTQEIEITIAKALSSTVHTHLFPHS 128
Query: 111 QIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC 170
I + V+ DG A I A +A+ D M D ++ G ++ + G
Sbjct: 129 SITVSLHVLSQDGSLLAALINAATLAVIDAGIPMTDY-----IAACTAGSTSSYAAGDDS 183
Query: 171 GYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADL 230
P++DL+ E+ + + DS +V + + ML + D +
Sbjct: 184 ADPLLDLNNQEEQELPFLTVASLGDSDRVVALVC---ESRVQVSRLEGMLVVGLDGCKQV 240
Query: 231 IKLQKDVISN 240
I +
Sbjct: 241 KMFLDKTIKD 250
>gi|167393565|ref|XP_001740629.1| exosome complex exonuclease RRP41 [Entamoeba dispar SAW760]
gi|165895202|gb|EDR22949.1| exosome complex exonuclease RRP41, putative [Entamoeba dispar
SAW760]
Length = 238
Score = 81.0 bits (198), Expect = 1e-13, Method: Composition-based stats.
Identities = 39/239 (16%), Positives = 78/239 (32%), Gaps = 21/239 (8%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
RL GR+ +MR+ + ++GS V+ G+T + + RN + +
Sbjct: 10 RLDGRRTTEMRKCEMEINFLNTSDGSARVRMGNTIVEAVVFGPLEGRR--RNREGAELMV 67
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
Y +T R ++ E ++ + V+ L I + ++Q
Sbjct: 68 SYSQATFATRKRREQMHDR-----TMIETAELLKQMYEQVIITKLLPETMIDLRVQIMQD 122
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
DG A I +AL D M D + + + V ++
Sbjct: 123 DGSVTAAVINACTLALIDAGIPMIDIVSAAEGGYIDGKMVVDMNKDE-----------EN 171
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
T+ +M SG + +Q + +L++ ++ + K I
Sbjct: 172 VGTVFNVHTAIMQKSGAVALLQTEGK---MPLQRLGDLLSIVEEGAKTIGIEMKKRIRE 227
>gi|71747850|ref|XP_822980.1| exosome complex exonuclease RRP41A [Trypanosoma brucei TREU927]
gi|70832648|gb|EAN78152.1| exosome complex exonuclease RRP41A [Trypanosoma brucei]
Length = 252
Score = 81.0 bits (198), Expect = 1e-13, Method: Composition-based stats.
Identities = 41/242 (16%), Positives = 87/242 (35%), Gaps = 18/242 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+RL GR+ N+ R ++L +G C V G +H+ T +V + +
Sbjct: 13 LRLDGRRPNEPRRLALEFGKISGCDGCCTVVSGLSHVCATVYGPREVSNRLEGKYNEVTI 72
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
++ G R + + R + R++ V LS + QI I +V++
Sbjct: 73 TCDVVVAAFAGERRREQQRYSRLSEDISASVLDVARSV---VLLSQYPNSQIHICIEVLK 129
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
DG + A I A +AL D M+D + + V ++ +
Sbjct: 130 QDGSDKAACINAACLALIDASIAMKDVVYTQTVGLIEGFDVVDLTTEEIHS--------- 180
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK-LQKDVIS 239
+ D +IV ++ ++ + + ++ +A+ D+ + + +
Sbjct: 181 --QCPSICITVQGHDPTNIVWMESNSR---LAPEVITRLVKVAQKASTDVFETALRGPLE 235
Query: 240 NE 241
Sbjct: 236 EH 237
>gi|221131497|ref|XP_002158932.1| PREDICTED: similar to Exosome component 8 [Hydra magnipapillata]
Length = 272
Score = 81.0 bits (198), Expect = 1e-13, Method: Composition-based stats.
Identities = 32/250 (12%), Positives = 77/250 (30%), Gaps = 20/250 (8%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+R GR ++ R+ + K A GS LV+ G+T ++ + +
Sbjct: 22 IRPDGRALDEYRKTIVNINSIKTASGSGLVRIGNTIVVCGIKA-----VSLFLNFCLPNV 76
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
+ + Q SQ + + + + +++
Sbjct: 77 PNVDLPALCSHEFRPGPPSDQAQA-MSQLVAETVENCKLINLKKLCIKEKKLCWVIYADI 135
Query: 121 ADGGTRTAAITGAWVALHDCLQHME-------------DCSNKFQLSQVLKGHVAAISCG 167
I +L+ L + + + S Q + L +++ +
Sbjct: 136 ICISHDGNLIDAIIASLYIALLNTKLPVVTINEETGSPEASPTEQFTLELTTRLSSTTVE 195
Query: 168 MLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRI 227
++ +VD Y E+ ++ D +I+ + + ++D + A R
Sbjct: 196 LIDNKLLVDPTYEEEQLSLSSLTIILGDEKNIISMYKPG-GCSVNEDSVRTCIKYAIHRA 254
Query: 228 ADLIKLQKDV 237
+L L +
Sbjct: 255 EELDSLIHEA 264
>gi|121710390|ref|XP_001272811.1| exosome complex endonuclease 1/ribosomal RNA processing protein,
putative [Aspergillus clavatus NRRL 1]
gi|119400961|gb|EAW11385.1| exosome complex endonuclease 1/ribosomal RNA processing protein,
putative [Aspergillus clavatus NRRL 1]
Length = 269
Score = 80.7 bits (197), Expect = 1e-13, Method: Composition-based stats.
Identities = 40/256 (15%), Positives = 82/256 (32%), Gaps = 23/256 (8%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+RL GR+ N++R +S + + GS + G+T ++ + +
Sbjct: 14 LRLDGRRWNELRLLSAQISTNPASSGSSFLSMGNTSIMCSVHGPAEGKRGDATGGAAGSA 73
Query: 61 A-----EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115
+ + + +R +R S RQ I ++ A +S + I I
Sbjct: 74 GAIVEVDVNVAGFAGVDRKRRAGGSDRQS---SRIATILRSAFQSHLHTHLYPHSTISIH 130
Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQL------------SQVLKGHVAA 163
V+ +DG AA+ +AL D M + +
Sbjct: 131 VSVLSSDGSLLAAAVNACTLALVDAGIPMPGLLSACTSGMSGSASTPRDPRNDFLDPLLD 190
Query: 164 ISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLA 223
+S P + + + DA D + + ++ + ML +
Sbjct: 191 LSLPEEQELPFLTVGTTTAIPVGEDAMDDDEDDMKVSMLVMDSK---VHCTYLETMLAVG 247
Query: 224 KDRIADLIKLQKDVIS 239
D + ++ + VI
Sbjct: 248 IDGCKQIREILEGVIK 263
>gi|149411987|ref|XP_001513016.1| PREDICTED: similar to polymyositis/scleroderma autoantigen 1
[Ornithorhynchus anatinus]
Length = 439
Score = 80.7 bits (197), Expect = 2e-13, Method: Composition-based stats.
Identities = 44/257 (17%), Positives = 79/257 (30%), Gaps = 24/257 (9%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
RL GRQ R I ++ G C+V+ G T +L + E P + G +
Sbjct: 23 RLDGRQIYDYRNIKISFGTD---YGCCIVELGKTRVLGQVSCELVAPK-LNRATEGILFF 78
Query: 62 EYGMLPRSTGNRVKREAVS-----GRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
+ ++ R R + + V+ + QI +D
Sbjct: 79 NLELSQMASPAFEPGRQSDLLVKLNRLLERCLRNSKCVDTESLCVIAGEKV--WQIRVDL 136
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQ----------LSQVLKGHVAAISC 166
V+ DG AA A VAL + + + +S
Sbjct: 137 HVLNHDGNILDAASIAAIVALCHFRRPDVSVQGDEITLYTPEERDPVPLSIHHMPIYVSF 196
Query: 167 GMLCGYPIV--DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAK 224
+ D E+ +D M I +Q S +D +A
Sbjct: 197 AFFLQGAYLLVDPSEREERVMDGLMVIAMNKHREICTIQSSG-GVMLLKDQVLRCSKIAG 255
Query: 225 DRIADLIKLQKDVISNE 241
++A++ +L + + N+
Sbjct: 256 VKVAEITELIQKALEND 272
>gi|171695618|ref|XP_001912733.1| hypothetical protein [Podospora anserina S mat+]
gi|170948051|emb|CAP60215.1| unnamed protein product [Podospora anserina S mat+]
Length = 277
Score = 80.7 bits (197), Expect = 2e-13, Method: Composition-based stats.
Identities = 45/249 (18%), Positives = 79/249 (31%), Gaps = 18/249 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+R+ GR+ N++R I R A+GS ++ G T ++ T + G
Sbjct: 13 LRVDGRRWNELRRIHGQIRTQAAADGSSYLEMGHTKVMCVVTGPSEPGPRRGGAAGGASG 72
Query: 61 AEYGMLPRSTGNRVKRE----------AVSGRQGGRSQEIQRMIGRALRSVVDLSALGSR 110
V GR R+ E+Q + L + +
Sbjct: 73 GAGSGGQSKDAEVVVNIVIAGFSSVDRKRRGRGDKRTLEMQFTLSNTLAATLHTHLFPHS 132
Query: 111 QIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC 170
QI I V+ DG A I A +A D M D +
Sbjct: 133 QINISLHVLSQDGSLLAALINAATLACVDAGIPMTDYVTACTAGSTSTY-----AANDEG 187
Query: 171 GYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADL 230
P++DL++ E+ + + +S +V + + ML + D +
Sbjct: 188 ADPLLDLNHQEEQELPGLTVATLGESDKVVALVC---ESRVQISRLEGMLAVGVDGCKQV 244
Query: 231 IKLQKDVIS 239
++ VI
Sbjct: 245 REILDQVIK 253
>gi|302686574|ref|XP_003032967.1| hypothetical protein SCHCODRAFT_76318 [Schizophyllum commune H4-8]
gi|300106661|gb|EFI98064.1| hypothetical protein SCHCODRAFT_76318 [Schizophyllum commune H4-8]
Length = 291
Score = 80.7 bits (197), Expect = 2e-13, Method: Composition-based stats.
Identities = 36/249 (14%), Positives = 76/249 (30%), Gaps = 16/249 (6%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+R GR+ + R++++ A+GS LV+ GDT ++ E P + + + G+I
Sbjct: 46 VRPDGREFDAWRDVAVNVGSISTADGSSLVRLGDTTIVCGVKAEIAQPD-LDSPEDGFIV 104
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGS---RQIIIDCD 117
+ + Q + + + + L + ID
Sbjct: 105 PNVDLPAICSPKFKPGPPTEEAQVLSDRLNEVLTAHDVLPTSSLIIHPGKAAWVLYIDAT 164
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKG----------HVAAISCG 167
I DG A + AL + +A
Sbjct: 165 CINYDGNAFDATLIAMIAALKSTRLPRAKYDEDTGKVTCSRHDRDPLTLTNLPIAMSFGV 224
Query: 168 MLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRI 227
+ DL E+ +D + ++ G ++ V + + + + A R
Sbjct: 225 FNGDTIMSDLTSFEEPLMDTNVTVILGQDGGVLSVTQAGMGGG--ESLVDSCIASASKRR 282
Query: 228 ADLIKLQKD 236
+ L + +
Sbjct: 283 SFLAEYIYE 291
>gi|294659898|ref|XP_462331.2| DEHA2G18194p [Debaryomyces hansenii CBS767]
gi|199434319|emb|CAG90837.2| DEHA2G18194p [Debaryomyces hansenii]
Length = 245
Score = 80.7 bits (197), Expect = 2e-13, Method: Composition-based stats.
Identities = 34/243 (13%), Positives = 71/243 (29%), Gaps = 22/243 (9%)
Query: 1 MRLSGRQENQMREISLTRRVSK-YAEGSCLVKFGDTHLLTTATLEEKVP-MWIRNTKHGW 58
+R+ GR+ N++R ++GS ++ G+T ++ + N+
Sbjct: 12 LRIDGRRWNELRRFECRINTHPSSSDGSSYIEQGNTKIICMVQGPMEPSLRSQTNSSKAS 71
Query: 59 ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDV 118
I + ST R KR R + R V I I+ V
Sbjct: 72 IEINLSVANFSTIERKKRLKNEKRLIELK----TTLERTFEQSVICKLYPRTVIQINLHV 127
Query: 119 IQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLD 178
+ DGG +AL D M D + + + ++
Sbjct: 128 LCQDGGLLAGMTNAITLALIDAGIAMYDYVSAINAGLYDQTPL-----------LDLNTL 176
Query: 179 YGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
D + ++ ++ ++ D ++L + + L + +
Sbjct: 177 EENDMSCLTIGVVGKSEKLALLLLE-----DKMPLDMLESVLAIGIAGGHRVRDLMDNEV 231
Query: 239 SNE 241
Sbjct: 232 RKH 234
>gi|157877098|ref|XP_001686881.1| exosome complex exonuclease RRP41 [Leishmania major strain
Friedlin]
gi|68129956|emb|CAJ09264.1| putative exosome complex exonuclease rrp41 [Leishmania major strain
Friedlin]
Length = 246
Score = 80.7 bits (197), Expect = 2e-13, Method: Composition-based stats.
Identities = 36/242 (14%), Positives = 77/242 (31%), Gaps = 18/242 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+RL GR+ + R + + +GSC + G + + + +
Sbjct: 13 LRLDGRRPLEARRMDIAFGTLSACDGSCDITLGQSKVCACVFGPRESLHKQEAKHDKGLV 72
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
+ G + + + R++ + LS + QI I +V+Q
Sbjct: 73 TCEVAVAAFAGENRRNPQRRSKLSEDIGAAVVQVARSV---ILLSQYPNSQIHIYIEVLQ 129
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
DG + A + A +AL D M D + + + ++ L V
Sbjct: 130 QDGNEKIACVNAACLALIDANVAMRDAVCCIDAGILDEHMLIDLTSNELRSQCPVIAA-- 187
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL-QKDVIS 239
F D+ +I+ ++ + D +L A++ L + + +
Sbjct: 188 ---------AFTGHDTRNIIWLE---TASRLPPDSVTRLLKCAEEGATKLFEATMRKALE 235
Query: 240 NE 241
Sbjct: 236 EH 237
>gi|239788290|dbj|BAH70834.1| ACYPI001085 [Acyrthosiphon pisum]
Length = 213
Score = 80.7 bits (197), Expect = 2e-13, Method: Composition-based stats.
Identities = 33/158 (20%), Positives = 59/158 (37%), Gaps = 9/158 (5%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVP--MWIRNTKHGW 58
+R GR+ ++R I V +GS ++ G+T ++ ++
Sbjct: 9 LRTDGRRSGELRRIRCKMGVFNQPDGSAYLEQGNTKVVAAIYGPHEIRTNRAKAPNDSAV 68
Query: 59 ITAEYGMLPRSTGNRVKREAVSGRQGGRSQ-EIQRMIGRALRSVVDLSALGSRQIIIDCD 117
I +Y M S R + R E+ + +A+ + + QI I
Sbjct: 69 INCQYSMATFSRSERKR------RPRDNKSAELTLHLKQAMATAIKTDLYPKSQIDIFVQ 122
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQ 155
V+Q+DGG + + A +AL D ME+ S
Sbjct: 123 VLQSDGGNYSVCVNAATLALIDAGIAMEEFVISCTSSL 160
>gi|260806963|ref|XP_002598353.1| hypothetical protein BRAFLDRAFT_261208 [Branchiostoma floridae]
gi|229283625|gb|EEN54365.1| hypothetical protein BRAFLDRAFT_261208 [Branchiostoma floridae]
Length = 444
Score = 80.3 bits (196), Expect = 2e-13, Method: Composition-based stats.
Identities = 46/254 (18%), Positives = 83/254 (32%), Gaps = 18/254 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R+ GRQ R + ++ + + G C+V GDT +L + + + P R T+ I
Sbjct: 23 RIDGRQTYDYRRLKVSFGMER---GCCIVDLGDTKVLAQVSGKIEEPKKNRPTEGSIIIN 79
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGS--RQIIIDCDVI 119
S R SG + R E RA+ + G I D V+
Sbjct: 80 LELSPMASPAFEPGRPTESGIEMNRILERNIRDSRAVDTESLCIVAGEKVWSIRADVHVL 139
Query: 120 QADGGTRTAAITGAWVALHDCLQHMED-CSNKFQLSQVLKGHVAAISCGMLCGYPI---- 174
+G AA A AL + + + +S +
Sbjct: 140 NDEGNIMDAASIAAITALSHFRRPDVSVMGEEVTVHSPEDRDPVPLSVHHMPVCVTFAFF 199
Query: 175 -------VDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRI 227
VD + E+ +D M I + S ++ +A ++
Sbjct: 200 DQGEFLLVDPNRSEERVMDGRMVVGMNMHREICTLMMSG-GMLLVKEQVLRCSQIATVKV 258
Query: 228 ADLIKLQKDVISNE 241
A++I+L + + +
Sbjct: 259 AEIIELIQRALDKD 272
>gi|294943374|ref|XP_002783844.1| Exosome complex exonuclease RRP41, putative [Perkinsus marinus ATCC
50983]
gi|239896637|gb|EER15640.1| Exosome complex exonuclease RRP41, putative [Perkinsus marinus ATCC
50983]
Length = 248
Score = 80.3 bits (196), Expect = 2e-13, Method: Composition-based stats.
Identities = 35/249 (14%), Positives = 75/249 (30%), Gaps = 25/249 (10%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEE--------KVPMWIR 52
RL GR+ N++R ++L + A+GS ++ G T ++ + +
Sbjct: 13 FRLDGRRPNELRHLTLKIGDAPSADGSATLQQGLTKVVAHVFGPRPLQAASVGRAAGTMA 72
Query: 53 NTKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQI 112
+ Y +T +R +R R + R ++ V I
Sbjct: 73 RQGEAIVNVVYRTSSFATIDRKRRTTGDRNSTERQLW----LQRIIQDAVLTEMFPKSCI 128
Query: 113 IIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY 172
+ ++Q DG A + A AL D ++D + + V
Sbjct: 129 DVHLTILQEDGSALAACVNAAAAALVDAGIPIKDMFSACTVGLVNNQKPIVDLNHA---- 184
Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
+ + E+ + + F + +LA + ++
Sbjct: 185 -------ESEGCGGAVVTVAVYQRRK--ELNYLCLEGKINIESFESAADLAIEGAVTAVR 235
Query: 233 LQKDVISNE 241
+ I +
Sbjct: 236 AMRTFIQED 244
>gi|317574781|ref|NP_001188120.1| exosome complex exonuclease rrp42 [Ictalurus punctatus]
gi|308322915|gb|ADO28595.1| exosome complex exonuclease rrp42 [Ictalurus punctatus]
Length = 291
Score = 80.3 bits (196), Expect = 2e-13, Method: Composition-based stats.
Identities = 41/257 (15%), Positives = 73/257 (28%), Gaps = 19/257 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R+ GR R + + V +GS V G T +L E P + G++
Sbjct: 23 RVDGRGCEDYRHMEIETDVVSNTDGSAKVSLGQTDILVGIKAEIGRPRPMVP-DEGYLEF 81
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGR---ALRSVVDLSALGSRQIIIDCDV 118
+T R + + R LRS+ + +D +
Sbjct: 82 FVDCSANATPEFEGRGGEELGVELSNNLYKVFNNRHSLDLRSLCIRPGENCWVLYVDVLL 141
Query: 119 IQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQ--------------LSQVLKGHVAAI 164
+Q DG A AL + S + + ++ +
Sbjct: 142 LQCDGNLFDAMSIAIKAALFNTRIPNVHISEDEEGGKEIELSDDPYDCMRLNVENVPCIV 201
Query: 165 SCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAK 224
+ + +VD E S +T G + V+ + D F M K
Sbjct: 202 TLCKIGHRHVVDATLQEKSCSVASLLISVTHKGTVTCVRKLG-GGSLDPDSIFEMTETGK 260
Query: 225 DRIADLIKLQKDVISNE 241
L +++ E
Sbjct: 261 RVGKMLHVPLMELLQKE 277
>gi|168041870|ref|XP_001773413.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162675289|gb|EDQ61786.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 287
Score = 79.9 bits (195), Expect = 3e-13, Method: Composition-based stats.
Identities = 39/247 (15%), Positives = 67/247 (27%), Gaps = 24/247 (9%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+R GR R I++T V A GS K G T ++ + E P R + G
Sbjct: 20 LRSDGRGRLDFRNIAITTGVIPQANGSSRCKVGGTDVMVSVKAELGNPPKGRPSHGGM-Q 78
Query: 61 AEYGMLPRSTGNRVKREAVS-----GRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115
+ P + R R RS A + L + + +
Sbjct: 79 IKVECSPTANPEFEGRGGEELSLELTRGLERSFLGGPNGSGAAIDLSTLRIVDGKTCWVL 138
Query: 116 CDVI---QADGGTRTAAITGAWVALHDCLQHMEDCSNK--------------FQLSQVLK 158
C +DG A AL + + +
Sbjct: 139 CIDGLVLSSDGNLLDALSIAVKAALRNTGLPKVEVVAGGAEDEDPEIEVDDEESSQLDVS 198
Query: 159 GHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFA 218
I+ + VD E+S + + + G + V
Sbjct: 199 NAPVIITLTKVGKSYFVDATAEEESHMRSAVSVAVNRKGVVCGVTKRG-GEGLEPSTIID 257
Query: 219 MLNLAKD 225
M+++A+
Sbjct: 258 MISVAQQ 264
>gi|281343292|gb|EFB18876.1| hypothetical protein PANDA_013099 [Ailuropoda melanoleuca]
Length = 456
Score = 79.9 bits (195), Expect = 3e-13, Method: Composition-based stats.
Identities = 44/257 (17%), Positives = 79/257 (30%), Gaps = 24/257 (9%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
RL GRQ R I ++ G C+V+ G T +L + E V + G +
Sbjct: 23 RLDGRQTYDYRNIKISFGTD---YGCCIVELGKTRVLGQVSCEL-VSPKLNRATEGILFF 78
Query: 62 EYGMLPRSTGNRVKREAVS-----GRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
+ + R R + I VV + QI +D
Sbjct: 79 NLELSQMAAPAFEPGRQSDLLVKLNRLLERCLRNSKCIDTESLCVVAGEKV--WQIRVDL 136
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMED----------CSNKFQLSQVLKGHVAAISC 166
++ DG AA A VAL + + + + +S
Sbjct: 137 HLLNHDGNIIDAASIAAIVALCHFRRPDVSVQGDEVTLYTPEERDPVPLSIHHMPICVSF 196
Query: 167 GMLCGYPIV--DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAK 224
+ D + E+ +D M I +Q S +D +A
Sbjct: 197 AFFQQGTYLLVDPNEREERVMDGLLVIAMNKHREICTIQSSGGIMLL-KDQVLRCSKIAG 255
Query: 225 DRIADLIKLQKDVISNE 241
++ ++ +L + + N+
Sbjct: 256 VKVLEITELIQKALEND 272
>gi|254468299|ref|ZP_05081705.1| ribonuclease PH [beta proteobacterium KB13]
gi|207087109|gb|EDZ64392.1| ribonuclease PH [beta proteobacterium KB13]
Length = 161
Score = 79.9 bits (195), Expect = 3e-13, Method: Composition-based stats.
Identities = 69/155 (44%), Positives = 102/155 (65%), Gaps = 2/155 (1%)
Query: 79 VSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVALH 138
G+Q GR+QEIQR+IGR+LR+++DL+ +G + +DCDV+QADGGTRTA+ITGA A+
Sbjct: 6 ARGKQSGRTQEIQRLIGRSLRAMIDLTKIGENTLQVDCDVLQADGGTRTASITGAACAIE 65
Query: 139 DCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGH 198
D +++M + + K +AAIS G++ +VDLDY EDS + D N VMT+
Sbjct: 66 DAVEYMLKAKLISESPIIKK--IAAISAGIVDSKVLVDLDYDEDSNCETDMNIVMTEDKQ 123
Query: 199 IVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
+E+QG+AE FSQD +L L+ D I + ++
Sbjct: 124 FIEIQGTAEGNPFSQDELNEILTLSSDAIQSIFQI 158
>gi|302786484|ref|XP_002975013.1| hypothetical protein SELMODRAFT_102800 [Selaginella moellendorffii]
gi|300157172|gb|EFJ23798.1| hypothetical protein SELMODRAFT_102800 [Selaginella moellendorffii]
Length = 288
Score = 79.9 bits (195), Expect = 3e-13, Method: Composition-based stats.
Identities = 37/261 (14%), Positives = 68/261 (26%), Gaps = 24/261 (9%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+R GR R +S+ + A GS V+ G T ++ + E P R +G I
Sbjct: 20 LRSDGRGRYHFRNLSIQVGIIPQANGSARVRLGGTDVIVSVKAELGSPRSGRP-NYGSIE 78
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRM------IGRALRSVVDLSALGSRQIII 114
+ R + G A+ +
Sbjct: 79 VMVECSATAGPEFEGRGGEDLNMELSRALQRCFVGGPSGAGAAIDLSTLGIVASKFCWEL 138
Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQL----------------SQVLK 158
D + + AL + +
Sbjct: 139 FVDCLVVNSDGNLLDALSIGAALSNTGIPSVKVTGNTASEDDADLEVGDNPDEFARLDAS 198
Query: 159 GHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFA 218
I+ + + IVD E+ + + + G I+ + +
Sbjct: 199 KVPLIITLTKIGRHYIVDATPEEEMGMSSAVSVAVNSKGLILGLTKRGDGG-LDPSVVTD 257
Query: 219 MLNLAKDRIADLIKLQKDVIS 239
M+++AK DLI L I+
Sbjct: 258 MISVAKHIARDLIVLVDTEIA 278
>gi|190346269|gb|EDK38314.2| hypothetical protein PGUG_02412 [Meyerozyma guilliermondii ATCC
6260]
Length = 242
Score = 79.9 bits (195), Expect = 3e-13, Method: Composition-based stats.
Identities = 34/238 (14%), Positives = 68/238 (28%), Gaps = 22/238 (9%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAE-GSCLVKFGDTHLLTTATLEEKVPMWIR-NTKHGW 58
+R+ GR+ N++R + GS V+ G+T ++ + + +
Sbjct: 12 LRVDGRRWNELRRFECKINTHPNSSTGSSYVEQGNTKVICMVEGPSEPETRSQVDVSRAT 71
Query: 59 ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDV 118
I + ST R KR R + R V I ++ V
Sbjct: 72 IEVNIAVASFSTIERKKRLKNEKRIIELKATM----ERTFEQSVICKLYPRTVIKVNLHV 127
Query: 119 IQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLD 178
+ DGG I +AL D M D + + ++
Sbjct: 128 LAQDGGMLATMINATTLALIDAGIAMYDYVAAVAAGLHNETPL-----------LDLNTL 176
Query: 179 YGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
D + ++ ++ ++ D +L + + +L
Sbjct: 177 EENDMSHLTLGVIGKSEKLAVLMLE-----DKMPMDRLEPVLAIGIAGSHRIRELMDQ 229
>gi|315051732|ref|XP_003175240.1| exosome complex exonuclease RRP41 [Arthroderma gypseum CBS 118893]
gi|311340555|gb|EFQ99757.1| exosome complex exonuclease RRP41 [Arthroderma gypseum CBS 118893]
Length = 278
Score = 79.9 bits (195), Expect = 3e-13, Method: Composition-based stats.
Identities = 38/249 (15%), Positives = 83/249 (33%), Gaps = 14/249 (5%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIR-NTKHGWI 59
+RL GR+ N++R + + + GS + G+T +L T + I
Sbjct: 14 LRLDGRRWNELRLLQAQISTNPASSGSSYLSMGNTAVLCTVHGPAEGKRSETAGAAGAVI 73
Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRS--QEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
+ + +R K+ A G R E+ ++ A + + I I
Sbjct: 74 NVVVNLAGFANVDRKKKSATGSGGGDRQATTELANLLRDAFQPHIHAHLYPRSTISIHVS 133
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHM-------EDCSNKFQLSQVLKGHVAAISCGMLC 170
V+ +DG A + +AL D M E +S + + ++
Sbjct: 134 VLSSDGSLFAACLNACTLALVDAGIPMPGWGGINESLDPLLDISAPEEVELPYMTVANTN 193
Query: 171 GYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADL 230
P +++ ++ D + + ++ + V + + M + D
Sbjct: 194 PMPDINVPRDDEDEEDDEYD-AENENQMLSIVHMDS---GVHVSYLETMFAVGIDGCKQT 249
Query: 231 IKLQKDVIS 239
++ V+
Sbjct: 250 REILNGVLK 258
>gi|296081851|emb|CBI20856.3| unnamed protein product [Vitis vinifera]
Length = 243
Score = 79.5 bits (194), Expect = 3e-13, Method: Composition-based stats.
Identities = 43/247 (17%), Positives = 78/247 (31%), Gaps = 24/247 (9%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R GR NQ+R ++ +R + A GS GDT +L + N + I
Sbjct: 5 RDDGRTANQLRPLACSRNILNRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKACIEV 64
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
+ +G+ G +E + ++ R L+S+ L+ + I V+
Sbjct: 65 V-------------WKPKTGQIGKPEKEYEVILKRTLKSICLLNINPNTTTSIIIQVVSD 111
Query: 122 DGGTRTAAITGAWVALHDCLQHMED-----CSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
DG AI A AL D ++ C + V+ M +V
Sbjct: 112 DGALLPCAINAACAALVDAAIPLKHLAVAICCCLTESGYVILDPTKVEEQKMKAFAYLVF 171
Query: 177 LD--YGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
+ + + G I V S D + L + +
Sbjct: 172 PNSAISIIPEGSSHMEGELMEHGIITSV----THGVMSVDDYLHCLERGQAASTKMSAFL 227
Query: 235 KDVISNE 241
+ + ++
Sbjct: 228 RRSLQSQ 234
>gi|126330626|ref|XP_001362882.1| PREDICTED: similar to polymyositis/scleroderma autoantigen 1
isoform 2 [Monodelphis domestica]
Length = 436
Score = 79.5 bits (194), Expect = 3e-13, Method: Composition-based stats.
Identities = 47/257 (18%), Positives = 78/257 (30%), Gaps = 24/257 (9%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
RL GRQ R I ++ G C+V+ G T +L + E V + G +
Sbjct: 23 RLDGRQTYDYRNIKISFGTD---YGCCIVELGKTRVLGQVSCEL-VSPKLNRATEGILFF 78
Query: 62 EYGMLPRSTGNRVKREAVS-----GRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
+ + R R + I VV + QI +D
Sbjct: 79 NLELSQMAAPAFEPGRQSDLLVKLNRLLERCLRNSKCIDTESLCVVAGEKV--WQIRVDL 136
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQ----------LSQVLKGHVAAISC 166
++ DG AA A VAL + + + IS
Sbjct: 137 HLLNHDGNIIDAASIAAIVALCHFRRPDVSVQGDEITLYALEERDPVPLSIHHMPICISF 196
Query: 167 GMLCGYPIV--DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAK 224
+ D + E+ +D M I +Q S QD +A
Sbjct: 197 AFFQQGTYLLVDPNEREERVMDGLLVIAMNKHREICTIQSSGGIMLL-QDQVLRCSKIAG 255
Query: 225 DRIADLIKLQKDVISNE 241
++A++ +L + N+
Sbjct: 256 VKVAEITELILKALEND 272
>gi|255578123|ref|XP_002529931.1| Exosome complex exonuclease RRP41, putative [Ricinus communis]
gi|223530561|gb|EEF32439.1| Exosome complex exonuclease RRP41, putative [Ricinus communis]
Length = 180
Score = 79.5 bits (194), Expect = 4e-13, Method: Composition-based stats.
Identities = 28/155 (18%), Positives = 56/155 (36%), Gaps = 8/155 (5%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+R GR ++ R A GS +FG+T ++ + + + + G +
Sbjct: 33 VRPDGRSFSECRPAYFRTGAVNAAAGSAYAEFGNTKVIVSVFGPRESKKAMMYSDVGRLN 92
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
ST R QG +E M+ ++L + L + + V++
Sbjct: 93 CNVSYTTFSTPVRG--------QGSDCKEFSSMLHKSLEGAIMLETFPKTTVDVFALVLE 144
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQ 155
+ G + ++ A +AL D M D + +
Sbjct: 145 SGGSDLSVIVSCASLALADAGIMMYDLVAGVSVHE 179
>gi|301776905|ref|XP_002923870.1| PREDICTED: exosome complex exonuclease RRP45-like [Ailuropoda
melanoleuca]
Length = 440
Score = 79.5 bits (194), Expect = 4e-13, Method: Composition-based stats.
Identities = 44/257 (17%), Positives = 79/257 (30%), Gaps = 24/257 (9%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
RL GRQ R I ++ G C+V+ G T +L + E V + G +
Sbjct: 23 RLDGRQTYDYRNIKISFGTD---YGCCIVELGKTRVLGQVSCEL-VSPKLNRATEGILFF 78
Query: 62 EYGMLPRSTGNRVKREAVS-----GRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
+ + R R + I VV + QI +D
Sbjct: 79 NLELSQMAAPAFEPGRQSDLLVKLNRLLERCLRNSKCIDTESLCVVAGEKV--WQIRVDL 136
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMED----------CSNKFQLSQVLKGHVAAISC 166
++ DG AA A VAL + + + + +S
Sbjct: 137 HLLNHDGNIIDAASIAAIVALCHFRRPDVSVQGDEVTLYTPEERDPVPLSIHHMPICVSF 196
Query: 167 GMLCGYPIV--DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAK 224
+ D + E+ +D M I +Q S +D +A
Sbjct: 197 AFFQQGTYLLVDPNEREERVMDGLLVIAMNKHREICTIQSSGGIMLL-KDQVLRCSKIAG 255
Query: 225 DRIADLIKLQKDVISNE 241
++ ++ +L + + N+
Sbjct: 256 VKVLEITELIQKALEND 272
>gi|225708190|gb|ACO09941.1| Exosome complex exonuclease RRP45 [Osmerus mordax]
Length = 398
Score = 79.5 bits (194), Expect = 4e-13, Method: Composition-based stats.
Identities = 52/260 (20%), Positives = 86/260 (33%), Gaps = 30/260 (11%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
RL GRQ R I ++ G C V G T ++T + E VP R + G +
Sbjct: 23 RLDGRQIYDYRTIKISFGTD---YGCCFVDLGKTRVMTQVSCELVVPKDNRPSD-GIMFF 78
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSA--------LGSRQII 113
+ P ++ GRQ ++ R + R LR+ QI
Sbjct: 79 NVELSPMASPGF-----EVGRQSELLVKLNRQLERCLRNSKCFDTESLCVVSGEKVWQIR 133
Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHME------------DCSNKFQLSQVLKGHV 161
+D V+ DG AA A AL + + + LS
Sbjct: 134 VDVHVLNHDGNLMDAASVAAITALSHFRRPDVGIHGEEVTVYGSEERDPIPLSIYHMPIC 193
Query: 162 AAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLN 221
+ S Y +VD E+ +D M I +Q S ++
Sbjct: 194 VSFSFFQQGTYLLVDPCEREERVMDGLLMIAMNKHREICSIQSSGGIMLL-KEQVLRCSK 252
Query: 222 LAKDRIADLIKLQKDVISNE 241
+A ++ ++ +L + N+
Sbjct: 253 IASVKVTEITELIHKALEND 272
>gi|266618485|pdb|2WP8|B Chain B, Yeast Rrp44 Nuclease
Length = 246
Score = 79.5 bits (194), Expect = 4e-13, Method: Composition-based stats.
Identities = 37/242 (15%), Positives = 76/242 (31%), Gaps = 19/242 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKY-AEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWI 59
+RL GR+ N++R + + A+GS ++ G+ ++T ++ P
Sbjct: 12 LRLDGRRWNELRRFESSINTHPHAADGSSYMEQGNNKIITLVKGPKE-PRLKSQMDTSKA 70
Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119
+ + S + R EIQ + R V L+ I I+ V+
Sbjct: 71 LLNVSVNINKFSKFERS-KSSHKNERRVLEIQTSLVRMFEKNVMLNIYPRTVIDIEIHVL 129
Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179
+ DGG + I G +AL D M D + + + +
Sbjct: 130 EQDGGIMGSLINGITLALIDAGISMFDYISGISVGLYDTTPLLDT-----------NSLE 178
Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
+ ++ ++ V+ D +L + + L + +
Sbjct: 179 ENAMSTVTLGVVGKSEKLSLLLVE-----DKIPLDRLENVLAIGIAGAHRVRDLMDEELR 233
Query: 240 NE 241
Sbjct: 234 KH 235
>gi|225429944|ref|XP_002281273.1| PREDICTED: hypothetical protein [Vitis vinifera]
Length = 245
Score = 79.5 bits (194), Expect = 4e-13, Method: Composition-based stats.
Identities = 43/247 (17%), Positives = 78/247 (31%), Gaps = 24/247 (9%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R GR NQ+R ++ +R + A GS GDT +L + N + I
Sbjct: 7 RDDGRTANQLRPLACSRNILNRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKACIEV 66
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
+ +G+ G +E + ++ R L+S+ L+ + I V+
Sbjct: 67 V-------------WKPKTGQIGKPEKEYEVILKRTLKSICLLNINPNTTTSIIIQVVSD 113
Query: 122 DGGTRTAAITGAWVALHDCLQHMED-----CSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
DG AI A AL D ++ C + V+ M +V
Sbjct: 114 DGALLPCAINAACAALVDAAIPLKHLAVAICCCLTESGYVILDPTKVEEQKMKAFAYLVF 173
Query: 177 LD--YGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
+ + + G I V S D + L + +
Sbjct: 174 PNSAISIIPEGSSHMEGELMEHGIITSV----THGVMSVDDYLHCLERGQAASTKMSAFL 229
Query: 235 KDVISNE 241
+ + ++
Sbjct: 230 RRSLQSQ 236
>gi|322503669|emb|CBZ38755.1| unnamed protein product [Leishmania donovani BPK282A1]
Length = 246
Score = 79.5 bits (194), Expect = 4e-13, Method: Composition-based stats.
Identities = 36/242 (14%), Positives = 77/242 (31%), Gaps = 18/242 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+RL GR+ + R + + +GSC + G + + + +
Sbjct: 13 LRLDGRRPLEARRMDIAFGTLSACDGSCDITLGQSKVCACVFGPRESLHKQEAKHDKGLV 72
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
+ G + + + R++ + LS + QI I +V+Q
Sbjct: 73 TCEVAVAAFAGENRRNPQRRSKLSEDIGAAVVQVARSV---ILLSQYPNSQIHIYIEVLQ 129
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
DG + A + A +AL D M D + + + ++ L V
Sbjct: 130 KDGNEKIACVNAACLALIDANVAMRDAVCCIDAGILDEHMLIDLTNDELRSQCPVIAA-- 187
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK-LQKDVIS 239
F D+ +I+ ++ + D +L A++ L + + +
Sbjct: 188 ---------AFTGHDTRNIIWLE---TASRLPPDSAARLLKCAEEGATKLFETAMRKALE 235
Query: 240 NE 241
Sbjct: 236 EH 237
>gi|328790286|ref|XP_624243.3| PREDICTED: exosome complex exonuclease RRP45-like [Apis mellifera]
Length = 414
Score = 79.5 bits (194), Expect = 4e-13, Method: Composition-based stats.
Identities = 38/259 (14%), Positives = 84/259 (32%), Gaps = 23/259 (8%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+RL GR + R + + GSC+V G T ++ T + + P R G +
Sbjct: 22 IRLDGRSLLEARPVKI---YFASNWGSCMVLLGQTRVIAQVTCDIQQPKTSRP-NEGMLH 77
Query: 61 AEYGMLPRSTGNRVKREAVS-----GRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115
+ P + + RQ + + + I L S+ ++ + +D
Sbjct: 78 INVELNPMAAQHFDSGRQSEISILISRQLEKCYQDSKCID--LESLCIIADKKVWNLRVD 135
Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQV-----------LKGHVAAI 164
+VI DG A AL + + + + V
Sbjct: 136 INVINHDGNLIDCASIATLAALSHFHRPDVTSNGEDIIVHPFSEKDPLPLTLYHYPVCVS 195
Query: 165 SCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAML-NLA 223
G ++D Y E+ + + + + T + + + + + A
Sbjct: 196 FITFESGNTVMDPTYLEERIGVAQLTLGINSYRELCSLHFNYLTKTMTVEDVISAVSSYA 255
Query: 224 KDRIADLIKLQKDVISNEV 242
+ L++ K+ + +++
Sbjct: 256 TNYAVQLVQQIKETVFSDI 274
>gi|15231368|ref|NP_190207.1| 3' exoribonuclease family domain 1-containing protein [Arabidopsis
thaliana]
gi|79314404|ref|NP_001030817.1| 3' exoribonuclease family domain 1-containing protein [Arabidopsis
thaliana]
gi|79314427|ref|NP_001030818.1| 3' exoribonuclease family domain 1-containing protein [Arabidopsis
thaliana]
gi|79314448|ref|NP_001030819.1| 3' exoribonuclease family domain 1-containing protein [Arabidopsis
thaliana]
gi|145332769|ref|NP_001078250.1| 3' exoribonuclease family domain 1-containing protein [Arabidopsis
thaliana]
gi|7799009|emb|CAB90948.1| putative protein [Arabidopsis thaliana]
gi|27808554|gb|AAO24557.1| At3g46210 [Arabidopsis thaliana]
gi|110736314|dbj|BAF00127.1| hypothetical protein [Arabidopsis thaliana]
gi|222423954|dbj|BAH19939.1| AT3G46210 [Arabidopsis thaliana]
gi|222424492|dbj|BAH20201.1| AT3G46210 [Arabidopsis thaliana]
gi|332644608|gb|AEE78129.1| exosome complex component RRP46 [Arabidopsis thaliana]
gi|332644609|gb|AEE78130.1| exosome complex component RRP46 [Arabidopsis thaliana]
gi|332644610|gb|AEE78131.1| exosome complex component RRP46 [Arabidopsis thaliana]
gi|332644611|gb|AEE78132.1| exosome complex component RRP46 [Arabidopsis thaliana]
gi|332644612|gb|AEE78133.1| exosome complex component RRP46 [Arabidopsis thaliana]
gi|332644613|gb|AEE78134.1| exosome complex component RRP46 [Arabidopsis thaliana]
Length = 239
Score = 79.5 bits (194), Expect = 4e-13, Method: Composition-based stats.
Identities = 40/241 (16%), Positives = 72/241 (29%), Gaps = 22/241 (9%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R GR NQ+R ++ +R + GS GDT +L + N +
Sbjct: 5 REDGRTPNQLRPLACSRNILHRPHGSASWSQGDTKVLAAVYGPKAGTKKNENAEKACFEV 64
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
+ SG+ G +E + ++ R ++S+ L+ + + V+
Sbjct: 65 I-------------WKPKSGQIGKVEKEYEMILKRTIQSICVLTVNPNTTTSVIIQVVHD 111
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
DG AI A AL D M+ + + +
Sbjct: 112 DGSLLPCAINAACAALVDAGIPMK---HLAVAICCCLAENGYLVLDPNKLEEKKMTAFAY 168
Query: 182 DSTIDVDANF----VMTDSGHIVE--VQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
+ + G VE + S S D +F + + A L +
Sbjct: 169 LVFPNTTLSVLPEGSSVAEGEPVEHGIITSITHGVMSVDDYFLCVENGRAATASLSAFFR 228
Query: 236 D 236
Sbjct: 229 K 229
>gi|322695534|gb|EFY87340.1| exosome complex exonuclease RRP41 [Metarhizium acridum CQMa 102]
Length = 291
Score = 79.1 bits (193), Expect = 4e-13, Method: Composition-based stats.
Identities = 47/264 (17%), Positives = 83/264 (31%), Gaps = 32/264 (12%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHG--- 57
+R+ GR+ N++R + R A+GS + G T ++ T + +
Sbjct: 13 LRVDGRRWNELRRLHAQIRTQDAADGSSYFEMGHTKVMCVVTGPSEQQQAQVQAQRRGAQ 72
Query: 58 ----------WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGR----------- 96
G R + + GR+ R GR
Sbjct: 73 ASGRDAASIIVNVVIAGFSSVDRKKRGRNDKEGGREIEHRALTWRGYGRRTQEIEITIAK 132
Query: 97 ALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQV 156
AL S V I + V+ DG A I A +A+ D M D ++
Sbjct: 133 ALSSTVHTHLFPHSSITVSLHVLSQDGSLLAALINAATLAVIDAGIPMTDY-----IAAC 187
Query: 157 LKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHF 216
G ++ + G P++DL+ E+ + + DS +V + +
Sbjct: 188 TAGSTSSYAAGDDSADPLLDLNNQEEQELPFLTVASLGDSDRVVALVC---ESRVQVSRL 244
Query: 217 FAMLNLAKDRIADLIKLQKDVISN 240
ML + D + I +
Sbjct: 245 EGMLVVGLDGCKQVKMFLDKTIKD 268
>gi|73983962|ref|XP_533302.2| PREDICTED: similar to exosome component 9 isoform 1 [Canis
familiaris]
Length = 440
Score = 79.1 bits (193), Expect = 4e-13, Method: Composition-based stats.
Identities = 44/257 (17%), Positives = 79/257 (30%), Gaps = 24/257 (9%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
RL GRQ R I ++ G C+V+ G T +L + E V + G +
Sbjct: 23 RLDGRQTYDYRNIKISFGTD---YGCCIVELGKTRVLGQVSCEL-VSPKLNRATEGILFF 78
Query: 62 EYGMLPRSTGNRVKREAVS-----GRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
+ + R R + I VV + QI +D
Sbjct: 79 NLELSQMAAPAFEPGRQSDLLVKLNRLLERCLRNSKCIDTESLCVVAGEKV--WQIRVDL 136
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMED----------CSNKFQLSQVLKGHVAAISC 166
++ DG AA A VAL + + + + +S
Sbjct: 137 HLLNHDGNIIDAASIAAIVALCHFRRPDVSVQGDEVTLYTPEERDPVPLSIHHMPICVSF 196
Query: 167 GMLCGYPIV--DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAK 224
+ D + E+ +D M I +Q S +D +A
Sbjct: 197 AFFQQGTYLLVDPNEREERVMDGLLVIAMNKHREICTIQSSGGIMLL-KDQVLRCSKIAG 255
Query: 225 DRIADLIKLQKDVISNE 241
++ ++ +L + + N+
Sbjct: 256 VKVLEITELIQKALEND 272
>gi|126330624|ref|XP_001362799.1| PREDICTED: similar to polymyositis/scleroderma autoantigen 1
isoform 1 [Monodelphis domestica]
Length = 438
Score = 79.1 bits (193), Expect = 4e-13, Method: Composition-based stats.
Identities = 47/257 (18%), Positives = 78/257 (30%), Gaps = 24/257 (9%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
RL GRQ R I ++ G C+V+ G T +L + E V + G +
Sbjct: 23 RLDGRQTYDYRNIKISFGTD---YGCCIVELGKTRVLGQVSCEL-VSPKLNRATEGILFF 78
Query: 62 EYGMLPRSTGNRVKREAVS-----GRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
+ + R R + I VV + QI +D
Sbjct: 79 NLELSQMAAPAFEPGRQSDLLVKLNRLLERCLRNSKCIDTESLCVVAGEKV--WQIRVDL 136
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQ----------LSQVLKGHVAAISC 166
++ DG AA A VAL + + + IS
Sbjct: 137 HLLNHDGNIIDAASIAAIVALCHFRRPDVSVQGDEITLYALEERDPVPLSIHHMPICISF 196
Query: 167 GMLCGYPIV--DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAK 224
+ D + E+ +D M I +Q S QD +A
Sbjct: 197 AFFQQGTYLLVDPNEREERVMDGLLVIAMNKHREICTIQSSGGIMLL-QDQVLRCSKIAG 255
Query: 225 DRIADLIKLQKDVISNE 241
++A++ +L + N+
Sbjct: 256 VKVAEITELILKALEND 272
>gi|73983964|ref|XP_857380.1| PREDICTED: similar to exosome component 9 isoform 2 [Canis
familiaris]
Length = 403
Score = 79.1 bits (193), Expect = 5e-13, Method: Composition-based stats.
Identities = 44/257 (17%), Positives = 79/257 (30%), Gaps = 24/257 (9%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
RL GRQ R I ++ G C+V+ G T +L + E V + G +
Sbjct: 23 RLDGRQTYDYRNIKISFGTD---YGCCIVELGKTRVLGQVSCEL-VSPKLNRATEGILFF 78
Query: 62 EYGMLPRSTGNRVKREAVS-----GRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
+ + R R + I VV + QI +D
Sbjct: 79 NLELSQMAAPAFEPGRQSDLLVKLNRLLERCLRNSKCIDTESLCVVAGEKV--WQIRVDL 136
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMED----------CSNKFQLSQVLKGHVAAISC 166
++ DG AA A VAL + + + + +S
Sbjct: 137 HLLNHDGNIIDAASIAAIVALCHFRRPDVSVQGDEVTLYTPEERDPVPLSIHHMPICVSF 196
Query: 167 GMLCGYPIV--DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAK 224
+ D + E+ +D M I +Q S +D +A
Sbjct: 197 AFFQQGTYLLVDPNEREERVMDGLLVIAMNKHREICTIQSSGGIMLL-KDQVLRCSKIAG 255
Query: 225 DRIADLIKLQKDVISNE 241
++ ++ +L + + N+
Sbjct: 256 VKVLEITELIQKALEND 272
>gi|321475502|gb|EFX86465.1| hypothetical protein DAPPUDRAFT_222073 [Daphnia pulex]
Length = 290
Score = 79.1 bits (193), Expect = 5e-13, Method: Composition-based stats.
Identities = 32/254 (12%), Positives = 70/254 (27%), Gaps = 20/254 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+R GR R I L + A GS ++ ++ +L +E P+ + G +
Sbjct: 22 LRCDGRTRLDYRPIILETGLVSNASGSARLRLANSDILVGVKVELASPLPDKPQ-EGRLE 80
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGR---ALRSVVDLSALGSRQIIIDCD 117
+T R + L + L+ + +D
Sbjct: 81 FFVDCSANATPEFEGRGGEDLANEICRFLQRSYASGDTINLSELSVLTGQQCWVLYVDIL 140
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNK--------------FQLSQVLKGHVAA 163
+++ G A AL+ + +
Sbjct: 141 ILECGGNLYDAVSLAVKSALYATQIPSIKVATMDGDQPELELSDDPYDTKRLNTENIPCV 200
Query: 164 ISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLA 223
++ + + +VD E+ ++ + I V+ + D +ML
Sbjct: 201 VTLMKIGNHYLVDPTPEEECCSSSGIVVAVSGNKKITAVRKIG-SGSLHPDSLVSMLKTG 259
Query: 224 KDRIADLIKL-QKD 236
+ A + + K
Sbjct: 260 SEVGAVVNTILMKK 273
>gi|39977801|ref|XP_370288.1| hypothetical protein MGG_06785 [Magnaporthe oryzae 70-15]
gi|145013689|gb|EDJ98330.1| hypothetical protein MGG_06785 [Magnaporthe oryzae 70-15]
Length = 280
Score = 79.1 bits (193), Expect = 5e-13, Method: Composition-based stats.
Identities = 44/253 (17%), Positives = 74/253 (29%), Gaps = 21/253 (8%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIR-------- 52
+R+ GR+ N++R R A+GS ++ G T ++ T + R
Sbjct: 13 LRVDGRRWNELRRCHAQIRTQAAADGSSYLEMGHTKVMCVVTGPSEAAPGQRRTGVNITA 72
Query: 53 -----NTKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSAL 107
AE + G GR R QE+Q + AL + +
Sbjct: 73 TATGGGQGAQSKEAEVVVSIVVAGFSSVDRKKRGRGDKRIQELQATVSHALSATLHTHLF 132
Query: 108 GSRQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCG 167
I V+ DG A I A +A D M D A +
Sbjct: 133 QHSTITFSLHVLSQDGSLLAALINAATLAAVDAGIPMADY---VVACSAGSTSSYAAADE 189
Query: 168 MLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRI 227
++ + A TD ++ + ML +A D
Sbjct: 190 SADPLLDLNQQEETELPGLTAATLGATDRVVVLSCES-----RVQASRLEGMLAVAVDGC 244
Query: 228 ADLIKLQKDVISN 240
+ ++ V+
Sbjct: 245 KQVREILDRVVKE 257
>gi|146417428|ref|XP_001484683.1| hypothetical protein PGUG_02412 [Meyerozyma guilliermondii ATCC
6260]
Length = 242
Score = 79.1 bits (193), Expect = 5e-13, Method: Composition-based stats.
Identities = 35/238 (14%), Positives = 67/238 (28%), Gaps = 22/238 (9%)
Query: 1 MRLSGRQENQMREISLTRRVSKYA-EGSCLVKFGDTHLLTTATLE-EKVPMWIRNTKHGW 58
+R+ GR+ N++R + GS V+ G+T ++ E +
Sbjct: 12 LRVDGRRWNELRRFECKINTHPNSLTGSSYVEQGNTKVICMVEGPLEPETRSQVDVSRAT 71
Query: 59 ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDV 118
I + ST R KR R + R V I ++ V
Sbjct: 72 IEVNIAVASFSTIERKKRLKNEKRIIELKATM----ERTFEQSVICKLYPRTVIKVNLHV 127
Query: 119 IQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLD 178
+ DGG I +AL D M D + + ++
Sbjct: 128 LAQDGGMLATMINATTLALIDAGIAMYDYVAAVAAGLHNETPL-----------LDLNTL 176
Query: 179 YGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
D + ++ ++ ++ D +L + + +L
Sbjct: 177 EENDMSHLTLGVIGKSEKLAVLMLE-----DKMPMDRLEPVLAIGIAGSHRIRELMDQ 229
>gi|6321634|ref|NP_011711.1| Ski6p [Saccharomyces cerevisiae S288c]
gi|1176073|sp|P46948|RRP41_YEAST RecName: Full=Exosome complex component SKI6; AltName:
Full=Extracellular mutant protein 20; AltName:
Full=Ribosomal RNA-processing protein 41; AltName:
Full=Superkiller protein 6
gi|791127|emb|CAA58018.1| G7587 [Saccharomyces cerevisiae]
gi|1323347|emb|CAA97221.1| unnamed protein product [Saccharomyces cerevisiae]
gi|45270908|gb|AAS56835.1| YGR195W [Saccharomyces cerevisiae]
gi|151943471|gb|EDN61782.1| superkiller [Saccharomyces cerevisiae YJM789]
gi|207345003|gb|EDZ71963.1| YGR195Wp-like protein [Saccharomyces cerevisiae AWRI1631]
gi|256271491|gb|EEU06540.1| Ski6p [Saccharomyces cerevisiae JAY291]
gi|259146697|emb|CAY79954.1| Ski6p [Saccharomyces cerevisiae EC1118]
gi|285812388|tpg|DAA08288.1| TPA: Ski6p [Saccharomyces cerevisiae S288c]
gi|323304789|gb|EGA58548.1| Ski6p [Saccharomyces cerevisiae FostersB]
gi|323333367|gb|EGA74763.1| Ski6p [Saccharomyces cerevisiae AWRI796]
gi|323337488|gb|EGA78736.1| Ski6p [Saccharomyces cerevisiae Vin13]
gi|323348458|gb|EGA82703.1| Ski6p [Saccharomyces cerevisiae Lalvin QA23]
gi|323354862|gb|EGA86695.1| Ski6p [Saccharomyces cerevisiae VL3]
Length = 246
Score = 79.1 bits (193), Expect = 5e-13, Method: Composition-based stats.
Identities = 37/242 (15%), Positives = 76/242 (31%), Gaps = 19/242 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKY-AEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWI 59
+RL GR+ N++R + + A+GS ++ G+ ++T ++ P
Sbjct: 12 LRLDGRRWNELRRFESSINTHPHAADGSSYMEQGNNKIITLVKGPKE-PRLKSQMDTSKA 70
Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119
+ + S + R EIQ + R V L+ I I+ V+
Sbjct: 71 LLNVSVNITKFSKFERS-KSSHKNERRVLEIQTSLVRMFEKNVMLNIYPRTVIDIEIHVL 129
Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179
+ DGG + I G +AL D M D + + + +
Sbjct: 130 EQDGGIMGSLINGITLALIDAGISMFDYISGISVGLYDTTPLLDT-----------NSLE 178
Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
+ ++ ++ V+ D +L + + L + +
Sbjct: 179 ENAMSTVTLGVVGKSEKLSLLLVE-----DKIPLDRLENVLAIGIAGAHRVRDLMDEELR 233
Query: 240 NE 241
Sbjct: 234 KH 235
>gi|149698257|ref|XP_001503169.1| PREDICTED: similar to Exosome component 9 [Equus caballus]
Length = 440
Score = 79.1 bits (193), Expect = 5e-13, Method: Composition-based stats.
Identities = 44/257 (17%), Positives = 80/257 (31%), Gaps = 24/257 (9%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
RL GRQ R I ++ G C+V+ G T +L + E V + G +
Sbjct: 23 RLDGRQTYDYRNIKISFGTD---YGCCVVELGKTRVLGQVSCEL-VSPKLNRATEGILFF 78
Query: 62 EYGMLPRSTGNRVKREAVS-----GRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
+ + R R + I VV + QI +D
Sbjct: 79 NLELSQMAAPAFEPGRQSDLLVKLNRLLERCLRNSKCIDTESLCVVAGEKV--WQIRVDL 136
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMED----------CSNKFQLSQVLKGHVAAISC 166
++ DG AA A VAL + + + + +S
Sbjct: 137 HLLNHDGNIIDAASIAAIVALCHFRRPDVSVQGDEVTLYTPEERDPVPLSIHHMPICVSF 196
Query: 167 GMLCGYPIV--DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAK 224
+ D + E+ +D M I +Q S ++ +A
Sbjct: 197 AFFQQGTYLLVDPNEREERVMDGLLVLAMNKHREICTIQSSGGIMLL-KEQVLRCSKIAG 255
Query: 225 DRIADLIKLQKDVISNE 241
++A++ +L + + N+
Sbjct: 256 VKVAEITELIQKALEND 272
>gi|159128917|gb|EDP54031.1| exosome complex endonuclease 1/ribosomal RNA processing protein,
putative [Aspergillus fumigatus A1163]
Length = 269
Score = 79.1 bits (193), Expect = 5e-13, Method: Composition-based stats.
Identities = 39/257 (15%), Positives = 81/257 (31%), Gaps = 23/257 (8%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+RL GR+ N++R + + + GS + G+T ++ + +
Sbjct: 14 LRLDGRRWNELRLLQAQISTNPASSGSSFLSMGNTSIMCSVHGPAEGKRGDATGGAAGSA 73
Query: 61 A-----EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115
+ + + +R +R S RQ I ++ A +S + I I
Sbjct: 74 GAVVEVDVNIAGFAGVDRRRRAGGSDRQS---SRIATILRSAFQSHLHTHLYPHSTISIH 130
Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQL------------SQVLKGHVAA 163
V+ ADG AA+ +AL D M + +
Sbjct: 131 VSVLSADGSLLAAAVNACTLALVDAGIPMPGLLSACTSGMSGSASTPRDPRNDFLDPLLD 190
Query: 164 ISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLA 223
+S P + + + DA + + + ++ + ML +
Sbjct: 191 LSLPEEQELPFLTVGTTTAIPVGEDAMDDDDEDMKVSMMVMDSK---VHCTYLETMLAVG 247
Query: 224 KDRIADLIKLQKDVISN 240
D + ++ + VI
Sbjct: 248 IDGCKQIREILEGVIKR 264
>gi|14250906|emb|CAC39258.1| Rrp41p homologue [Trypanosoma brucei]
Length = 252
Score = 79.1 bits (193), Expect = 5e-13, Method: Composition-based stats.
Identities = 41/242 (16%), Positives = 87/242 (35%), Gaps = 18/242 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+RL GR++N+ R ++L +G C V G +H+ T +V + +
Sbjct: 13 LRLDGRRQNEPRRLALEFGKISGCDGCCTVVSGLSHVCATVYGPREVSNRLDGKYNEVTI 72
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
++ G R + + R + R++ V LS + QI I +V++
Sbjct: 73 TCDVVVAAFAGERRREQQRYSRLSEDISASVLDVARSV---VLLSQYPNSQIHICIEVLK 129
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
DG + A I A +AL D M D + + V ++ +
Sbjct: 130 QDGSDKAACINAACLALIDASIAMRDVVYTQTVGLIEGFDVVDLTTEEIHS--------- 180
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK-LQKDVIS 239
+ D +IV ++ ++ + + ++ +A+ D+ + + +
Sbjct: 181 --QCPSICITVQGHDPTNIVWMESNSR---LAPEVITRLVKVAQKASTDVFETALRGPLE 235
Query: 240 NE 241
Sbjct: 236 EH 237
>gi|70989313|ref|XP_749506.1| exosome complex endonuclease 1/ribosomal RNA processing protein
[Aspergillus fumigatus Af293]
gi|66847137|gb|EAL87468.1| exosome complex endonuclease 1/ribosomal RNA processing protein,
putative [Aspergillus fumigatus Af293]
Length = 269
Score = 79.1 bits (193), Expect = 5e-13, Method: Composition-based stats.
Identities = 40/256 (15%), Positives = 81/256 (31%), Gaps = 23/256 (8%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+RL GR+ N++R + + + GS + G+T ++ + +
Sbjct: 14 LRLDGRRWNELRLLQAQISTNPASSGSSFLSMGNTSIMCSVHGPAEGKRGDATGGAAGSA 73
Query: 61 A-----EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115
+ + + +R +R S RQ I ++ A +S + I I
Sbjct: 74 GAVVEVDVNIAGFAGVDRRRRAGGSDRQS---SRIATILRSAFQSHLHTHLYPHSTISIH 130
Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHME------------DCSNKFQLSQVLKGHVAA 163
V+ ADG AA+ +AL D M S +
Sbjct: 131 VSVLSADGSLLAAAVNACTLALVDAGIPMPGLLSACTSGMSGSASTLRDPRNDFLDPLLD 190
Query: 164 ISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLA 223
+S P + + + DA + + + ++ + ML +
Sbjct: 191 LSLPEEQELPFLTVGTTTAIPVGEDAMDDDDEDMKVSMMVMDSK---VHCTYLETMLAVG 247
Query: 224 KDRIADLIKLQKDVIS 239
D + ++ + VI
Sbjct: 248 IDGCKQIREILEGVIK 263
>gi|190406796|gb|EDV10063.1| exosome complex exonuclease RRP41 [Saccharomyces cerevisiae
RM11-1a]
Length = 246
Score = 79.1 bits (193), Expect = 5e-13, Method: Composition-based stats.
Identities = 37/242 (15%), Positives = 76/242 (31%), Gaps = 19/242 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKY-AEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWI 59
+RL GR+ N++R + + A+GS ++ G+ ++T ++ P
Sbjct: 12 LRLDGRRWNELRRFESSINTHPHAADGSSYMEQGNNKIITLVKGPKE-PRLKSQMDTSKA 70
Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119
+ + S + R EIQ + R V L+ I I+ V+
Sbjct: 71 LLNVSVNITKFSKFERS-KSSHKNERRVLEIQTSLVRMFEKNVMLNIYPRTVIDIEIHVL 129
Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179
+ DGG + I G +AL D M D + + + +
Sbjct: 130 EQDGGIMGSLINGITLALIDAGISMFDYISGISVGLYDTTPLLDT-----------NSLE 178
Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
+ ++ ++ V+ D +L + + L + +
Sbjct: 179 ENAMSTVTLGVVGKSEKLSLLLVE-----DKIPLDRLENVLAIGIAGAHRVRDLMDEELR 233
Query: 240 NE 241
Sbjct: 234 KH 235
>gi|147779414|emb|CAN74356.1| hypothetical protein VITISV_000912 [Vitis vinifera]
Length = 476
Score = 78.7 bits (192), Expect = 6e-13, Method: Composition-based stats.
Identities = 46/270 (17%), Positives = 91/270 (33%), Gaps = 40/270 (14%)
Query: 1 MRLSGRQENQMREISLTRRVSKYA--------EGSCLVKFGDTHLLTTATLEEKVPMWIR 52
+R+ GR+ R IS+ + +GS V+ G TH++ T + + +
Sbjct: 27 LRIDGRRPFDFRRISIKFG--RQVFIRTICAEDGSSEVQLGQTHVMGFVTGQL-IQPYRD 83
Query: 53 NTKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALG---- 108
G ++ P + + +GR G + E+ R+I R LR +
Sbjct: 84 RPNEGTLSIYTEFSPMADPSF-----EAGRPGEAAVELGRVIDRGLRESRAVDMESLCVL 138
Query: 109 ----SRQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCS-------------NKF 151
I ID +I G AA A AL + +
Sbjct: 139 AGKLVWSIRIDLHIIDNGGNLIDAANIAALAALLTFRRPECSFGGEDGQELIVHPPEVRE 198
Query: 152 QLSQVLKGHVAAISCGM--LCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERA 209
L ++ A++ + ++D + E++ + + +G + +Q +
Sbjct: 199 PLPLIVHHLPIAVTFAIIGNENIMVIDPTHSEEAVMGGRMTATLNTNGDVCAIQKAGGEG 258
Query: 210 TFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
Q L +A + AD+ K+ +
Sbjct: 259 II-QSVIMQCLRIASVKAADITSKIKNAVE 287
>gi|116181272|ref|XP_001220485.1| hypothetical protein CHGG_01264 [Chaetomium globosum CBS 148.51]
gi|88185561|gb|EAQ93029.1| hypothetical protein CHGG_01264 [Chaetomium globosum CBS 148.51]
Length = 277
Score = 78.7 bits (192), Expect = 6e-13, Method: Composition-based stats.
Identities = 38/255 (14%), Positives = 79/255 (30%), Gaps = 26/255 (10%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+R+ GR+ N++R ++ R A+GS ++ G T ++ T +
Sbjct: 13 LRVDGRRWNELRRVNAQIRTQAAADGSSYLEMGHTKVMCVVTGPSEPGPRRGGVGGAGGG 72
Query: 61 AEYG--------------MLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSA 106
G + S+ +R + R + E+ + AL + +
Sbjct: 73 GGGGGGAGGKAEIVVGIVIAGFSSVDRKRHGRGDKR----TLELASTVANALAASLHTHL 128
Query: 107 LGSRQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISC 166
QI + V+ DG A I A +A D M D A +
Sbjct: 129 FPHSQINVSLHVLSQDGSLLAALINAATLACVDAGIPMTDY---VAACTAGSTSTYAAND 185
Query: 167 GMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226
++ ++ A +D ++ + ML + D
Sbjct: 186 EGADPLLDLNHQEEQELPGLTVATLGESDRVAVLVCES-----RVQVSRLEGMLAVGVDG 240
Query: 227 IADLIKLQKDVISNE 241
+ ++ V+ ++
Sbjct: 241 CKQMREILDRVVRDK 255
>gi|56758238|gb|AAW27259.1| SJCHGC04772 protein [Schistosoma japonicum]
Length = 277
Score = 78.7 bits (192), Expect = 6e-13, Method: Composition-based stats.
Identities = 36/241 (14%), Positives = 78/241 (32%), Gaps = 14/241 (5%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R+ GR ++ R + + + +A GS ++ G+T ++ +E P + G I
Sbjct: 23 RMDGRGPSEYRPLEIETNILSHATGSASIRIGETFIVCCVKMEVGKP-SLTRLNEGRIEI 81
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGS--RQIIIDCDVI 119
P +T ++ A + ++ + G I ID ++
Sbjct: 82 NVECYPTATYRCNEKGASELAERLKTTLQSTYQSEFINLNSLCIQRGRQCWVIYIDLLIL 141
Query: 120 QADGGTRTAAITGAWVALHDCLQHM----------EDCSNKFQLSQVLKGHVAAISCGML 169
+ G A+ AL + Q + S+ + ++ +
Sbjct: 142 EGAGNLLDASSLVIKAALLNATQSNSFLSSVFRNDTNTSDTEIQNCNEDMLPLFVTVHKI 201
Query: 170 CGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIAD 229
I+D E++ + V+ G I ++ + + M LA +
Sbjct: 202 GNAYIIDATKEEEACSLSRLSLVIYPDGSIGFLEHDG-CCSCQLESIVEMSQLATTVGKE 260
Query: 230 L 230
L
Sbjct: 261 L 261
>gi|198419225|ref|XP_002123693.1| PREDICTED: similar to Exosome component 9 [Ciona intestinalis]
Length = 385
Score = 78.7 bits (192), Expect = 6e-13, Method: Composition-based stats.
Identities = 33/255 (12%), Positives = 79/255 (30%), Gaps = 18/255 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+R+ GR + R I++ + G C+V G T ++ E P R ++
Sbjct: 24 IRIDGRGMLEYRGITIHFSLD---HGCCVVNMGGTKVMAQVAAELCRPRESRQSEGSLGV 80
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
+ + + SG + + E ++ +A+ +G + I V
Sbjct: 81 QVEMSMMAAPHLDPAKPGDSGAELQQMLERSIVMSQAVDLEELCVRVGEKSWNIQIFVHV 140
Query: 121 ADGG--TRTAAITGAWVALHDCLQHME------------DCSNKFQLSQVLKGHVAAISC 166
A + +L + + + L+ + +
Sbjct: 141 LSHDGNLLDCATIASMTSLKHFKRPDVSVVGQEVTIHKFEDKHPIPLTLHHVPFCVSFAF 200
Query: 167 GMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226
G +VD E+ +D + + +Q + + S++ N+A +
Sbjct: 201 FQGGGLMVVDPTLNEEKVMDGKLMVAVNKHKEVCCLQMNGQLQ-LSKEQILNCTNIASTK 259
Query: 227 IADLIKLQKDVISNE 241
+ + + N+
Sbjct: 260 AQTFYDIMETSLEND 274
>gi|289810801|ref|ZP_06541430.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Typhi str. AG3]
Length = 210
Score = 78.7 bits (192), Expect = 7e-13, Method: Composition-based stats.
Identities = 36/206 (17%), Positives = 67/206 (32%), Gaps = 27/206 (13%)
Query: 14 ISLTRRV-SKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----HGWITAEYGMLPR 68
++L + ++ A + +V DT + T ++K + T G +P
Sbjct: 27 VTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVNYQERTYAAGRIPG 86
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
S R GR I R+I R +R + + Q+I +
Sbjct: 87 SFFRR------EGRPSEGETLIARLIDRPVRPLFPEGFVNEVQVIATVVSVNPQVNPDIV 140
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+ GA A G + A G + +++ E +D
Sbjct: 141 AMIGASAA-------------LSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLD 187
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQD 214
T++ ++ V+ AE S+D
Sbjct: 188 LVVAGTEA-AVLMVESEAEL--LSED 210
>gi|296810936|ref|XP_002845806.1| exosome complex exonuclease RRP41 [Arthroderma otae CBS 113480]
gi|238843194|gb|EEQ32856.1| exosome complex exonuclease RRP41 [Arthroderma otae CBS 113480]
Length = 298
Score = 78.7 bits (192), Expect = 7e-13, Method: Composition-based stats.
Identities = 40/268 (14%), Positives = 78/268 (29%), Gaps = 32/268 (11%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIR-NTKHGWI 59
+RL GR+ N++R + + + GS + G+T +L T + I
Sbjct: 14 LRLDGRRWNELRLLQAQISTNPASSGSSYLSMGNTTVLCTVHGPAEGKRSETAGATGAVI 73
Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRS--QEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
+ + + +R K+ A G G R E+ +I A + + I I
Sbjct: 74 SVVVNLAGFANVDRKKKSAAGGGGGDRQATTELANLIRDAFQPHIHAHLYPRSTISIHVS 133
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC------- 170
V+ +DG A + +AL D M + + A++
Sbjct: 134 VLSSDGSLFAACLNACTLALVDAGIPMPGLLCACTVGMSGRASTPAVTAESAQMGGVNET 193
Query: 171 ----------GYPIVDLDYGEDSTIDVDANFVMTDSGH---------IVEVQGSAERATF 211
+ ++ D N D + V +
Sbjct: 194 LDPLLDISAPEEVELPYMTVANTNPMPDINIPKDDEDEYDAENENQMLSIVHMDS---GV 250
Query: 212 SQDHFFAMLNLAKDRIADLIKLQKDVIS 239
+ M + D ++ V+
Sbjct: 251 HVSYLETMFAVGIDGCKQTREILNGVLK 278
>gi|119479959|ref|XP_001260008.1| exosome complex endonuclease 1/ribosomal RNA processing protein,
putative [Neosartorya fischeri NRRL 181]
gi|119408162|gb|EAW18111.1| exosome complex endonuclease 1/ribosomal RNA processing protein,
putative [Neosartorya fischeri NRRL 181]
Length = 269
Score = 78.7 bits (192), Expect = 7e-13, Method: Composition-based stats.
Identities = 39/256 (15%), Positives = 81/256 (31%), Gaps = 23/256 (8%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+RL GR+ N++R + + + GS + G+T ++ + +
Sbjct: 14 LRLDGRRWNELRLLQAQISTNPASSGSSFLSMGNTSIMCSVHGPAEGKRGDATGGAAGSA 73
Query: 61 A-----EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115
+ + + +R +R S RQ I ++ A +S + I I
Sbjct: 74 GAVVEVDVNVAGFAGVDRRRRAGGSDRQS---SRIATILRSAFQSHLHTHLYPHSTISIH 130
Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQL------------SQVLKGHVAA 163
V+ ADG AA+ +AL D M + +
Sbjct: 131 VSVLSADGSLLAAAVNACTLALVDAGIPMPGLLSACTSGMSGSASTPRDPRNDFLDPLLD 190
Query: 164 ISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLA 223
+S P + + + DA + + + ++ + ML +
Sbjct: 191 LSLPEEQELPFLTVGTTTAIPVGEDAMDEDDEDMKVSMMVMDSK---VHCTYLETMLAVG 247
Query: 224 KDRIADLIKLQKDVIS 239
D + ++ + VI
Sbjct: 248 IDGCKQIREILEGVIK 263
>gi|50288675|ref|XP_446767.1| hypothetical protein [Candida glabrata CBS 138]
gi|49526075|emb|CAG59694.1| unnamed protein product [Candida glabrata]
Length = 246
Score = 78.3 bits (191), Expect = 7e-13, Method: Composition-based stats.
Identities = 47/243 (19%), Positives = 87/243 (35%), Gaps = 21/243 (8%)
Query: 1 MRLSGRQENQMREISLTRRVSKY-AEGSCLVKFGDTHLLTTATLEEK-VPMWIRNTKHGW 58
+RL GR+ N++R + A+GS ++ G+ ++T ++ + +
Sbjct: 12 LRLDGRRWNELRRFESAINTHPHAADGSSYLEQGNNKVITLVKGPKEPTLKSQMDIQKAI 71
Query: 59 ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDV 118
+ + S R K + R R E+Q + R V L I I+ V
Sbjct: 72 LKVTVNITKFSKFERSKSSHKNER---RVLEMQTALVRTFEKNVMLHVYPRTLIDIEIHV 128
Query: 119 IQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLD 178
+Q DGG + G +AL D M D + IS G+ P++D++
Sbjct: 129 LQQDGGIMGTLLNGISLALIDAGIAMYDYVSG-------------ISVGLYDTTPLLDIN 175
Query: 179 YGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
E++ + V+ S + +Q D +L + + L + I
Sbjct: 176 SLEENAMSAVTLGVVGKSEKLSLLQI---EDKIPLDRIENVLAIGIAGAHRIRDLMEQEI 232
Query: 239 SNE 241
Sbjct: 233 RAH 235
>gi|255716870|ref|XP_002554716.1| KLTH0F11924p [Lachancea thermotolerans]
gi|238936099|emb|CAR24279.1| KLTH0F11924p [Lachancea thermotolerans]
Length = 224
Score = 78.3 bits (191), Expect = 7e-13, Method: Composition-based stats.
Identities = 26/231 (11%), Positives = 71/231 (30%), Gaps = 18/231 (7%)
Query: 14 ISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGNR 73
IS V +GSC ++ G+T ++ + T + + R
Sbjct: 2 ISAQTGVLDQVDGSCKLQCGETTVICSVTGPIEPKARQELPSQLALEVVVRPCKGVPNTR 61
Query: 74 VKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGA 133
K ++ I + V+ + I ++++ +
Sbjct: 62 EK-------------LLEDQIRGVVTPVLAKYLYPRQLCQICFQILESGEPEDEYNVKEL 108
Query: 134 WVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVM 193
++ + D Q S S + P + DST +
Sbjct: 109 NSCINAAYLALIDSGVALQSSFSSVCVSVLGSNNEILVNPTQEQLIKSDSTHILALEVGS 168
Query: 194 TDSG--HIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNEV 242
+++ ++ + + F+++ F +L+ A+ ++ + + +++
Sbjct: 169 GGKKIQNVLLIESNGD---FTEEIMFNVLSRAEKACVEVALELRKAVEDKI 216
>gi|47218201|emb|CAF97065.1| unnamed protein product [Tetraodon nigroviridis]
Length = 556
Score = 78.3 bits (191), Expect = 7e-13, Method: Composition-based stats.
Identities = 38/234 (16%), Positives = 82/234 (35%), Gaps = 25/234 (10%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTA---TLEEKVPMWIRNTKHGWITAEYGMLP 67
R++ ++ ++++A+GS +V+ G+T ++ TA T + A G +P
Sbjct: 1 RKLEISSGRLARFADGSAVVQLGETSVMVTAVSKTKPSPSQFMPLVVDYRQKAAAAGRIP 60
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
+ R R+I R++R + Q++ + +
Sbjct: 61 TNYLRR------ELGTTDNEILTSRLIDRSVRPLFPAGYFYDTQVLCNLLAVDGVNDPDV 114
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
AI A AL G + A+ G++ G +++ E S+ +
Sbjct: 115 LAINAASAAL-------------ALSDIPWNGPIGAVRVGLVDGELLINPTRAEMSSSTL 161
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
+ S +V ++ SAE Q F + + +I + + +
Sbjct: 162 NLVVSGGPSSQVVMIEASAENVL--QQDFCHAVKVGIKHTQQIIHAIQQLAREQ 213
Score = 78.0 bits (190), Expect = 1e-12, Method: Composition-based stats.
Identities = 26/115 (22%), Positives = 43/115 (37%), Gaps = 12/115 (10%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE--------EKVPMWIRN 53
R GR+ +R IS + K GS L + G T +L++ T + + + +
Sbjct: 305 RCDGRELTALRNISCEVDLFKPLHGSALFQRGQTQVLSSVTFDSLESSVKADIITTALSG 364
Query: 54 TKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALG 108
K Y P +T K ++ R+ G +ALRSV+
Sbjct: 365 IKDKNFMLHYEFPPYATNETGKVAGLNRRELGHGAL----AEKALRSVIPKEFPF 415
>gi|313608979|gb|EFR84725.1| polyribonucleotide nucleotidyltransferase [Listeria monocytogenes
FSL F2-208]
Length = 184
Score = 78.3 bits (191), Expect = 8e-13, Method: Composition-based stats.
Identities = 36/187 (19%), Positives = 65/187 (34%), Gaps = 23/187 (12%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKV---PMWIRNTKHGWITAEYGMLPRS 69
+S+ ++K A G+ L+++GDT +LT A +K + + G +P
Sbjct: 16 LSVEVGQLAKQASGAALIRYGDTVVLTAAVGSKKPRPGDFFPLTVNYEEKMYSVGKVPGG 75
Query: 70 TGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAA 129
R GR R+ R+I R +R + QI + D AA
Sbjct: 76 FLKR------EGRPSDRATLTARLIDRPIRPLFAEGFRNEVQITSTVFSVDQDCSPEMAA 129
Query: 130 ITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDA 189
+ G+ VA +G +A + G + G +++ + D+
Sbjct: 130 MLGSSVA-------------LVISDIPFEGPIAGVDVGRIDGKYVINPTIEQAEKSDISL 176
Query: 190 NFVMTDS 196
T
Sbjct: 177 TVAGTYD 183
>gi|291401826|ref|XP_002717277.1| PREDICTED: exosome component 9 [Oryctolagus cuniculus]
Length = 440
Score = 78.3 bits (191), Expect = 8e-13, Method: Composition-based stats.
Identities = 47/260 (18%), Positives = 85/260 (32%), Gaps = 30/260 (11%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
RL GRQ R I ++ G C+V+ G T +L + E P + G +
Sbjct: 23 RLDGRQTYDYRNIRISFGTD---YGCCIVELGKTRVLGQVSCELVAPK-LNRATEGILFC 78
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSA--------LGSRQII 113
+ + GRQ ++ R++ R LR+ + QI
Sbjct: 79 NLELSQMAAPAFEP-----GRQSDLLVKLNRLLERCLRNSKCMDTESLCVVAGEKVWQIR 133
Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMED----------CSNKFQLSQVLKGHVAA 163
+D ++ DG AA A VAL + + + +
Sbjct: 134 VDLHLLNHDGNIIDAASIAAIVALCHFRRPDVSVQGDEVTLYTPEERDPVPLSIHHMPIC 193
Query: 164 ISCGMLCGYPIV--DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLN 221
+S + D E+ +D M I +Q S +D
Sbjct: 194 VSFAFFQQGMYLLVDPTEREERVMDGLLVIAMNKHREICTIQSSGGIMLL-KDQVLRCSK 252
Query: 222 LAKDRIADLIKLQKDVISNE 241
+A ++A++ +L + + N+
Sbjct: 253 IAGVKVAEITELIQKALEND 272
>gi|221114700|ref|XP_002158159.1| PREDICTED: similar to predicted protein [Hydra magnipapillata]
Length = 426
Score = 78.3 bits (191), Expect = 8e-13, Method: Composition-based stats.
Identities = 40/234 (17%), Positives = 61/234 (26%), Gaps = 17/234 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
R GR N R I++ + GS VK T++L E P+ +
Sbjct: 22 FRTDGRSCNDYRAITVQTGIISNTSGSAQVKLAGTNVLIGVKAEISEPLPSKPNLGKVEF 81
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
P R E I ++ A + ID V++
Sbjct: 82 FSANASP-IFEGRGGDELAFELSAALQNTFSGAIDLEKLCIIPGKAC--WILYIDALVLE 138
Query: 121 ADGGTRTAAITGAWVALHDCLQHME------DCSNKFQLSQVLKGHVAAISC-------G 167
G A ALH+ + +S
Sbjct: 139 CGGNLFDALSIAVKAALHNTRIPTLSIIGEGAEKSIEVSDDPYNSTPIDVSNIPVLVTLN 198
Query: 168 MLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLN 221
+ IVD E+ D + G++ VQ + D F ML
Sbjct: 199 KVGERYIVDATAEEEICSDAQLLVSINQKGNVCSVQKHGSGG-INPDLLFEMLK 251
>gi|77812672|ref|NP_001029366.1| exosome complex component RRP45 isoform 1 [Homo sapiens]
gi|28172868|emb|CAD56889.1| polymyositis/scleroderma autoantigen 1 [Homo sapiens]
gi|119625652|gb|EAX05247.1| exosome component 9, isoform CRA_a [Homo sapiens]
Length = 456
Score = 78.3 bits (191), Expect = 8e-13, Method: Composition-based stats.
Identities = 45/257 (17%), Positives = 79/257 (30%), Gaps = 24/257 (9%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
RL GRQ R I ++ G C+V+ G T +L + E V + G +
Sbjct: 23 RLDGRQTYDYRNIRISFGTD---YGCCIVELGKTRVLGQVSCEL-VSPKLNRATEGILFF 78
Query: 62 EYGMLPRSTGNRVKREAVS-----GRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
+ + R R + I VV + QI +D
Sbjct: 79 NLELSQMAAPAFEPGRQSDLLVKLNRLMERCLRNSKCIDTESLCVVAGEKV--WQIRVDL 136
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMED----------CSNKFQLSQVLKGHVAAISC 166
++ DG AA A VAL + + + + +S
Sbjct: 137 HLLNHDGNIIDAASIAAIVALCHFRRPDVSVQGDEVTLYTPEERDPVPLSIHHMPICVSF 196
Query: 167 GMLCGYPIV--DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAK 224
+ D + E+ +D M I +Q S +D +A
Sbjct: 197 AFFQQGTYLLVDPNEREERVMDGLLVIAMNKHREICTIQSSGGIMLL-KDQVLRCSKIAG 255
Query: 225 DRIADLIKLQKDVISNE 241
++A++ +L + N+
Sbjct: 256 VKVAEITELILKALEND 272
>gi|146218577|gb|AAI40040.1| Exosome component 9 [synthetic construct]
gi|146218579|gb|AAI40039.1| Exosome component 9 [synthetic construct]
gi|148745755|gb|AAI42979.1| Exosome component 9 [Homo sapiens]
Length = 439
Score = 78.3 bits (191), Expect = 9e-13, Method: Composition-based stats.
Identities = 45/257 (17%), Positives = 79/257 (30%), Gaps = 24/257 (9%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
RL GRQ R I ++ G C+V+ G T +L + E V + G +
Sbjct: 23 RLDGRQTYDYRNIRISFGTD---YGCCIVELGKTRVLGQVSCEL-VSPKLNRATEGILFF 78
Query: 62 EYGMLPRSTGNRVKREAVS-----GRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
+ + R R + I VV + QI +D
Sbjct: 79 NLELSQMAAPAFEPGRQSDLLVKLNRLMERCLRNSKCIDTESLCVVAGEKV--WQIRVDL 136
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMED----------CSNKFQLSQVLKGHVAAISC 166
++ DG AA A VAL + + + + +S
Sbjct: 137 HLLNHDGNIIDAASIAAIVALCHFRRPDVSVQGDEVTLYTPEERDPVPLSIHHMPICVSF 196
Query: 167 GMLCGYPIV--DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAK 224
+ D + E+ +D M I +Q S +D +A
Sbjct: 197 AFFQQGAYLLVDPNEREERVMDGLLVIAMNKHREICTIQSSGGIMLL-KDQVLRCSKIAG 255
Query: 225 DRIADLIKLQKDVISNE 241
++A++ +L + N+
Sbjct: 256 VKVAEITELILKALEND 272
>gi|124360770|gb|ABD33427.2| Peptidase S8 and S53, subtilisin, kexin, sedolisin; 3
exoribonuclease [Medicago truncatula]
Length = 241
Score = 78.3 bits (191), Expect = 9e-13, Method: Composition-based stats.
Identities = 37/246 (15%), Positives = 66/246 (26%), Gaps = 28/246 (11%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R GR NQ+R ++ + V A GS G+T +L + +N +
Sbjct: 5 RPDGRSPNQLRPLACSHSVLHRAHGSATWAQGETKVLAAVYGPKA--GTKKNENPEKASI 62
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
E P + G +E + ++ + L S+ + + +
Sbjct: 63 EVIWKPNTGH-----------VGQADREYEMILKKTLESICIRTIYPNTTTSVIVVHDDG 111
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
AI A AL D + + V + + Y
Sbjct: 112 A--LLPCAINAACAALVDAGIPLRHLAV-AICCSVTDNNSIILDPSKKEEEKSKAFAYLV 168
Query: 182 DSTIDVDANFVMTD--------SGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
V + G I V S D + L + L +
Sbjct: 169 FPNTTVSVVPEKSSQVGNDPMAHGIITSV----THGAMSVDDYLHCLERGRATTQRLSEF 224
Query: 234 QKDVIS 239
+ I+
Sbjct: 225 LRKNIA 230
>gi|195430734|ref|XP_002063403.1| GK21414 [Drosophila willistoni]
gi|194159488|gb|EDW74389.1| GK21414 [Drosophila willistoni]
Length = 296
Score = 78.3 bits (191), Expect = 9e-13, Method: Composition-based stats.
Identities = 38/260 (14%), Positives = 69/260 (26%), Gaps = 22/260 (8%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R GR R + L + A GS ++ +T +L E VP + + G +
Sbjct: 23 RCDGRSRKDYRPMELETGLVSNASGSARLRLANTDILVGVKTEIDVPDPL-TPEFGKLEF 81
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQII---IDCDV 118
+T R Q L + +Q ID +
Sbjct: 82 FVDCSANATPEFEGRGGSDLAQELILALQNAYESPLSFDYRTLCLIPGQQCWKLYIDILI 141
Query: 119 IQADGGTRTAAITGAWVALHDCLQHMEDCS-------NKFQLSQVLKGH-------VAAI 164
++ G A A AL++ S + +
Sbjct: 142 LECGGNLHDAVSLAAKAALYNTKLPRVTASLLDAGITDLIISDNPYDCTRLEIGTVPILV 201
Query: 165 SCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGH---IVEVQGSAERATFSQDHFFAMLN 221
+ + Y +VD E+ V ++ + + + +D LN
Sbjct: 202 TVCKIGDYCLVDPSAEEEVCSTVSMVVAISMKNKEAYLSGSHMTG-GGSMHRDTMLNSLN 260
Query: 222 LAKDRIADLIKLQKDVISNE 241
L L ++ E
Sbjct: 261 LGLSIGEHLNTHLIKMLKQE 280
>gi|225709084|gb|ACO10388.1| Exosome complex exonuclease RRP42 [Caligus rogercresseyi]
Length = 288
Score = 78.3 bits (191), Expect = 9e-13, Method: Composition-based stats.
Identities = 36/260 (13%), Positives = 69/260 (26%), Gaps = 29/260 (11%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+R+ GRQ +R + L V +A GS ++ +T +L E G +
Sbjct: 22 LRVDGRQRKDVRPMILETDVITHANGSARIRLANTDVLVGVKAELCEDRP------GGLE 75
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIG-RALRSVVDLSALGSRQIIIDCD-- 117
++ R S R V ++ D
Sbjct: 76 FYVDCSANASPEFEGRGGEDLALEISSTLASSYSDPRVFDPSVLHVFKNRYAWVLHVDVL 135
Query: 118 ----VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGH-----------VA 162
+ A+ A H+ D ++ +
Sbjct: 136 ILEVEGGNLFDVSSLAVKSALFCTQVPRVHIVDVDGGVPEIELSEDPEECFRLNVSGAPV 195
Query: 163 AISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNL 222
+S + + IVD E++ +T SG I ++ +F D L
Sbjct: 196 LVSLNRVGHFVIVDASPHEEACSSAAIVVAVTPSGRISSLRKVG-SGSFHIDTLEDALAT 254
Query: 223 AKDRIADLIKLQKDVISNEV 242
A + + ++
Sbjct: 255 A----GHVGTSLNKALFQKL 270
>gi|297674272|ref|XP_002815156.1| PREDICTED: exosome complex exonuclease RRP45-like isoform 5 [Pongo
abelii]
Length = 392
Score = 78.3 bits (191), Expect = 9e-13, Method: Composition-based stats.
Identities = 45/257 (17%), Positives = 79/257 (30%), Gaps = 24/257 (9%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
RL GRQ R I ++ G C+V+ G T +L + E V + G +
Sbjct: 23 RLDGRQTYDYRNIRISFGTD---YGCCIVELGKTRVLGQVSCEL-VSPKLNRATEGILFF 78
Query: 62 EYGMLPRSTGNRVKREAVS-----GRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
+ + R R + I VV + QI +D
Sbjct: 79 NLELSQMAAPAFEPGRQSDLLVKLNRLLERCLRNSKCIDTESLCVVAGEKV--WQIRVDL 136
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMED----------CSNKFQLSQVLKGHVAAISC 166
++ DG AA A VAL + + + + +S
Sbjct: 137 HLLNHDGNIIDAASIAAIVALCHFRRPDVSVQGDEVTLYTPEERDPVPLSIHHMPICVSF 196
Query: 167 GMLCGYPIV--DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAK 224
+ D + E+ +D M I +Q S +D +A
Sbjct: 197 AFFQQGTYLLVDPNEREECVMDGLLVIAMNKHREICTIQSSGGIMLL-KDQVLRCSKIAG 255
Query: 225 DRIADLIKLQKDVISNE 241
++A++ +L + N+
Sbjct: 256 VKVAEITELILKALEND 272
>gi|297674264|ref|XP_002815152.1| PREDICTED: exosome complex exonuclease RRP45-like isoform 1 [Pongo
abelii]
gi|297674266|ref|XP_002815153.1| PREDICTED: exosome complex exonuclease RRP45-like isoform 2 [Pongo
abelii]
Length = 439
Score = 78.0 bits (190), Expect = 9e-13, Method: Composition-based stats.
Identities = 45/257 (17%), Positives = 79/257 (30%), Gaps = 24/257 (9%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
RL GRQ R I ++ G C+V+ G T +L + E V + G +
Sbjct: 23 RLDGRQTYDYRNIRISFGTD---YGCCIVELGKTRVLGQVSCEL-VSPKLNRATEGILFF 78
Query: 62 EYGMLPRSTGNRVKREAVS-----GRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
+ + R R + I VV + QI +D
Sbjct: 79 NLELSQMAAPAFEPGRQSDLLVKLNRLLERCLRNSKCIDTESLCVVAGEKV--WQIRVDL 136
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMED----------CSNKFQLSQVLKGHVAAISC 166
++ DG AA A VAL + + + + +S
Sbjct: 137 HLLNHDGNIIDAASIAAIVALCHFRRPDVSVQGDEVTLYTPEERDPVPLSIHHMPICVSF 196
Query: 167 GMLCGYPIV--DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAK 224
+ D + E+ +D M I +Q S +D +A
Sbjct: 197 AFFQQGTYLLVDPNEREECVMDGLLVIAMNKHREICTIQSSGGIMLL-KDQVLRCSKIAG 255
Query: 225 DRIADLIKLQKDVISNE 241
++A++ +L + N+
Sbjct: 256 VKVAEITELILKALEND 272
>gi|297293310|ref|XP_001101063.2| PREDICTED: exosome complex exonuclease RRP45 [Macaca mulatta]
Length = 432
Score = 78.0 bits (190), Expect = 1e-12, Method: Composition-based stats.
Identities = 45/257 (17%), Positives = 79/257 (30%), Gaps = 24/257 (9%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
RL GRQ R I ++ G C+V+ G T +L + E V + G +
Sbjct: 23 RLDGRQTYDYRNIRISFGTD---YGCCIVELGKTRVLGQVSCEL-VSPKLNRATEGILFF 78
Query: 62 EYGMLPRSTGNRVKREAVS-----GRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
+ + R R + I VV + QI +D
Sbjct: 79 NLELSQMAAPAFEPGRQSDLLVKLNRLLERCLRNSKCIDTESLCVVAGEKV--WQIRVDL 136
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMED----------CSNKFQLSQVLKGHVAAISC 166
++ DG AA A VAL + + + + +S
Sbjct: 137 HLLNHDGNIIDAASIAAIVALCHFRRPDVSVQGDEVTLYTPEERDPVPLSIHHMPICVSF 196
Query: 167 GMLCGYPIV--DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAK 224
+ D + E+ +D M I +Q S +D +A
Sbjct: 197 AFFQQGTYLLVDPNEREERVMDGLLVIAMNKHREICTIQSSGGIMLL-KDQVLRCSKIAG 255
Query: 225 DRIADLIKLQKDVISNE 241
++A++ +L + N+
Sbjct: 256 VKVAEITELILKALEND 272
>gi|332244454|ref|XP_003271389.1| PREDICTED: exosome complex exonuclease RRP45 isoform 3 [Nomascus
leucogenys]
Length = 392
Score = 78.0 bits (190), Expect = 1e-12, Method: Composition-based stats.
Identities = 44/257 (17%), Positives = 79/257 (30%), Gaps = 24/257 (9%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
RL GRQ R I ++ G C+V+ G T +L + E V + G +
Sbjct: 23 RLDGRQTYDYRNIRISFGTD---YGCCIVELGKTRVLGQVSCEL-VSPKLNRATEGILFF 78
Query: 62 EYGMLPRSTGNRVKREAVS-----GRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
+ + R R + I VV + QI +D
Sbjct: 79 NLELSQMAAPAFEPGRQSDLLVKLNRLLERCLRNSKCIDTESLCVVAGEKV--WQIRVDL 136
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMED----------CSNKFQLSQVLKGHVAAISC 166
++ DG AA A V+L + + + + +S
Sbjct: 137 HLLNHDGNIIDAASIAAIVSLCHFRRPDVSVQGDEVTLYTPEERDPVPLSIHHMPICVSF 196
Query: 167 GMLCGYPIV--DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAK 224
+ D + E+ +D M I +Q S +D +A
Sbjct: 197 AFFQQGTYLLVDPNEREERVMDGLLVIAMNKHREICTIQSSGGIMLL-KDQVLRCSKIAG 255
Query: 225 DRIADLIKLQKDVISNE 241
++A++ +L + N+
Sbjct: 256 VKVAEITELILKALEND 272
>gi|291000993|ref|XP_002683063.1| exosome complex exonuclease RRP43 [Naegleria gruberi]
gi|284096692|gb|EFC50319.1| exosome complex exonuclease RRP43 [Naegleria gruberi]
Length = 279
Score = 78.0 bits (190), Expect = 1e-12, Method: Composition-based stats.
Identities = 39/253 (15%), Positives = 70/253 (27%), Gaps = 16/253 (6%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+R GR N +RE ++ EGS LVK G+T ++ E +P K+G +
Sbjct: 27 VRPDGRPLNMIRETVVSSGSLGNCEGSSLVKTGNTSVVCGIKAEVMIP-TEDAPKNGKVV 85
Query: 61 AEYGMLPRSTGNRVKREAVSGR--------------QGGRSQEIQRMIGRALRSVVDLSA 106
+ + Q I V +
Sbjct: 86 ISFDFPSICAADVTGNWEEINEKKSVIQQRLAGIFYNCNVMDLSQLCIEEGKAVWVLYAD 145
Query: 107 LGSRQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISC 166
L + + + + L + +S
Sbjct: 146 LYCLENDGNVFDAALIALLTALKNVSLPTCQITKDDEAIVTNENSNIKLQLDHYPIPLSF 205
Query: 167 GMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226
G L + IVD E+S + V + + + + Q L +AK R
Sbjct: 206 GNLSEFTIVDPTSEEESLLAWKLTIVYNERNELCSLFKPG-GKSIKQSTLNYCLEMAKKR 264
Query: 227 IADLIKLQKDVIS 239
+I + + +S
Sbjct: 265 TGKIISMIEKSVS 277
>gi|119625657|gb|EAX05252.1| exosome component 9, isoform CRA_f [Homo sapiens]
Length = 423
Score = 78.0 bits (190), Expect = 1e-12, Method: Composition-based stats.
Identities = 45/257 (17%), Positives = 79/257 (30%), Gaps = 24/257 (9%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
RL GRQ R I ++ G C+V+ G T +L + E V + G +
Sbjct: 7 RLDGRQTYDYRNIRISFGTD---YGCCIVELGKTRVLGQVSCEL-VSPKLNRATEGILFF 62
Query: 62 EYGMLPRSTGNRVKREAVS-----GRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
+ + R R + I VV + QI +D
Sbjct: 63 NLELSQMAAPAFEPGRQSDLLVKLNRLMERCLRNSKCIDTESLCVVAGEKV--WQIRVDL 120
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMED----------CSNKFQLSQVLKGHVAAISC 166
++ DG AA A VAL + + + + +S
Sbjct: 121 HLLNHDGNIIDAASIAAIVALCHFRRPDVSVQGDEVTLYTPEERDPVPLSIHHMPICVSF 180
Query: 167 GMLCGYPIV--DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAK 224
+ D + E+ +D M I +Q S +D +A
Sbjct: 181 AFFQQGTYLLVDPNEREERVMDGLLVIAMNKHREICTIQSSGGIMLL-KDQVLRCSKIAG 239
Query: 225 DRIADLIKLQKDVISNE 241
++A++ +L + N+
Sbjct: 240 VKVAEITELILKALEND 256
>gi|297674268|ref|XP_002815154.1| PREDICTED: exosome complex exonuclease RRP45-like isoform 3 [Pongo
abelii]
gi|297674270|ref|XP_002815155.1| PREDICTED: exosome complex exonuclease RRP45-like isoform 4 [Pongo
abelii]
Length = 456
Score = 78.0 bits (190), Expect = 1e-12, Method: Composition-based stats.
Identities = 45/257 (17%), Positives = 79/257 (30%), Gaps = 24/257 (9%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
RL GRQ R I ++ G C+V+ G T +L + E V + G +
Sbjct: 23 RLDGRQTYDYRNIRISFGTD---YGCCIVELGKTRVLGQVSCEL-VSPKLNRATEGILFF 78
Query: 62 EYGMLPRSTGNRVKREAVS-----GRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
+ + R R + I VV + QI +D
Sbjct: 79 NLELSQMAAPAFEPGRQSDLLVKLNRLLERCLRNSKCIDTESLCVVAGEKV--WQIRVDL 136
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMED----------CSNKFQLSQVLKGHVAAISC 166
++ DG AA A VAL + + + + +S
Sbjct: 137 HLLNHDGNIIDAASIAAIVALCHFRRPDVSVQGDEVTLYTPEERDPVPLSIHHMPICVSF 196
Query: 167 GMLCGYPIV--DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAK 224
+ D + E+ +D M I +Q S +D +A
Sbjct: 197 AFFQQGTYLLVDPNEREECVMDGLLVIAMNKHREICTIQSSGGIMLL-KDQVLRCSKIAG 255
Query: 225 DRIADLIKLQKDVISNE 241
++A++ +L + N+
Sbjct: 256 VKVAEITELILKALEND 272
>gi|194378034|dbj|BAG63380.1| unnamed protein product [Homo sapiens]
Length = 392
Score = 78.0 bits (190), Expect = 1e-12, Method: Composition-based stats.
Identities = 45/257 (17%), Positives = 79/257 (30%), Gaps = 24/257 (9%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
RL GRQ R I ++ G C+V+ G T +L + E V + G +
Sbjct: 23 RLDGRQTYDYRNIRISFGTD---YGCCIVELGKTRVLGQVSCEL-VSPKLNRATEGILFF 78
Query: 62 EYGMLPRSTGNRVKREAVS-----GRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
+ + R R + I VV + QI +D
Sbjct: 79 NLELSQMAAPAFEPGRQSDLLVKLNRLMERCLRNSKCIDTESLCVVAGEKV--WQIRVDL 136
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMED----------CSNKFQLSQVLKGHVAAISC 166
++ DG AA A VAL + + + + +S
Sbjct: 137 HLLNHDGNIIDAASIAAIVALCHFRRPDVSVQGDEVTLYTPEERDPVPLSIHHMPICVSF 196
Query: 167 GMLCGYPIV--DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAK 224
+ D + E+ +D M I +Q S +D +A
Sbjct: 197 AFFQQGTYLLVDPNEREERVMDGLLVIAMNKHREICTIQSSGGIMLL-KDQVLRCSKIAG 255
Query: 225 DRIADLIKLQKDVISNE 241
++A++ +L + N+
Sbjct: 256 VKVAEITELILKALEND 272
>gi|77812670|ref|NP_005024.2| exosome complex component RRP45 isoform 2 [Homo sapiens]
gi|147744559|sp|Q06265|EXOS9_HUMAN RecName: Full=Exosome complex component RRP45; AltName:
Full=Autoantigen PM/Scl 1; AltName: Full=Exosome
component 9; AltName: Full=P75 polymyositis-scleroderma
overlap syndrome-associated autoantigen; AltName:
Full=Polymyositis/scleroderma autoantigen 1; AltName:
Full=Polymyositis/scleroderma autoantigen 75 kDa;
Short=PM/Scl-75
gi|28172864|emb|CAD44530.1| polymyositis/scleroderma autoantigen 1 [Homo sapiens]
gi|119625653|gb|EAX05248.1| exosome component 9, isoform CRA_b [Homo sapiens]
Length = 439
Score = 78.0 bits (190), Expect = 1e-12, Method: Composition-based stats.
Identities = 45/257 (17%), Positives = 79/257 (30%), Gaps = 24/257 (9%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
RL GRQ R I ++ G C+V+ G T +L + E V + G +
Sbjct: 23 RLDGRQTYDYRNIRISFGTD---YGCCIVELGKTRVLGQVSCEL-VSPKLNRATEGILFF 78
Query: 62 EYGMLPRSTGNRVKREAVS-----GRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
+ + R R + I VV + QI +D
Sbjct: 79 NLELSQMAAPAFEPGRQSDLLVKLNRLMERCLRNSKCIDTESLCVVAGEKV--WQIRVDL 136
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMED----------CSNKFQLSQVLKGHVAAISC 166
++ DG AA A VAL + + + + +S
Sbjct: 137 HLLNHDGNIIDAASIAAIVALCHFRRPDVSVQGDEVTLYTPEERDPVPLSIHHMPICVSF 196
Query: 167 GMLCGYPIV--DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAK 224
+ D + E+ +D M I +Q S +D +A
Sbjct: 197 AFFQQGTYLLVDPNEREERVMDGLLVIAMNKHREICTIQSSGGIMLL-KDQVLRCSKIAG 255
Query: 225 DRIADLIKLQKDVISNE 241
++A++ +L + N+
Sbjct: 256 VKVAEITELILKALEND 272
>gi|327274166|ref|XP_003221849.1| PREDICTED: exosome complex exonuclease RRP45-like [Anolis
carolinensis]
Length = 439
Score = 78.0 bits (190), Expect = 1e-12, Method: Composition-based stats.
Identities = 44/257 (17%), Positives = 79/257 (30%), Gaps = 24/257 (9%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
RL GR+ R + ++ G C+V+ G T +L + E P R G +
Sbjct: 23 RLDGRECYDYRNLRISFG---SDYGCCIVELGKTRILGQVSCELVTPKPNR-ATEGILFF 78
Query: 62 EYGMLPRSTGNRVKREAVS-----GRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
+ P ++ R R + I VV + QI +D
Sbjct: 79 NLELSPMASPAFEPGRQPELLVKLNRLLERCLRNSKCIDTESLCVVAGEKV--WQIRVDL 136
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMED----------CSNKFQLSQVLKGHVAAISC 166
V+ +G AA A VAL + + + + +S
Sbjct: 137 HVLNHNGNLIDAASIAAIVALCHFRRPDVSVQGEEVTLYTPEERDPVPLSIHHMPICVSF 196
Query: 167 GMLCGYPIV--DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAK 224
+ D E+ +D M I +Q S +D +
Sbjct: 197 AFFQQGTFLLVDPSEQEERVMDGLLVIAMNKHREICTIQSSGGIMLL-KDQVLRCSKITG 255
Query: 225 DRIADLIKLQKDVISNE 241
++A++ L + + N+
Sbjct: 256 VKVAEITALIQKALEND 272
>gi|307180205|gb|EFN68238.1| Exosome complex exonuclease RRP45 [Camponotus floridanus]
Length = 387
Score = 78.0 bits (190), Expect = 1e-12, Method: Composition-based stats.
Identities = 43/261 (16%), Positives = 82/261 (31%), Gaps = 29/261 (11%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
RL GR+ Q R + + G C+V G T + + + + P R G I
Sbjct: 23 RLDGRRLLQPRPVKIYFG---SKWGCCMVSLGHTKAIAQVSCDIRQPKTFRP-NEGTIYI 78
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLS--------ALGSRQII 113
+ P + + SGRQ + I R + + + + +
Sbjct: 79 NVELAPLAAQHF-----ESGRQSEAAILISRQLEKCFKDSKCVDLESLCIVADKKVWSLR 133
Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQV-----------LKGHVA 162
ID ++I DG A AL + + + + V
Sbjct: 134 IDINIINHDGNLIDCASIAVLAALMHFHRPDVTSTGEEIIIHPASEKDFLPLTLFHYPVC 193
Query: 163 AISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAML-N 221
G I+D Y E+ + M + + T + + + + N
Sbjct: 194 VSFITFENGNTIMDPTYIEERVGVAELTLGMNSYRELCSLHFDYLTKTMTVEDVISAVSN 253
Query: 222 LAKDRIADLIKLQKDVISNEV 242
A + L++ K+ ++ +V
Sbjct: 254 HAANYATKLVQDIKEAVAKDV 274
>gi|114595918|ref|XP_001153729.1| PREDICTED: exosome component 9 isoform 1 [Pan troglodytes]
Length = 423
Score = 78.0 bits (190), Expect = 1e-12, Method: Composition-based stats.
Identities = 45/257 (17%), Positives = 79/257 (30%), Gaps = 24/257 (9%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
RL GRQ R I ++ G C+V+ G T +L + E V + G +
Sbjct: 7 RLDGRQTYDYRNIRISFGTD---YGCCIVELGKTRVLGQVSCEL-VSPKLNRATEGILFF 62
Query: 62 EYGMLPRSTGNRVKREAVS-----GRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
+ + R R + I VV + QI +D
Sbjct: 63 NLELSQMAAPAFEPGRQSDLLVKLNRLLERCLRNSKCIDTESLCVVAGEKV--WQIRVDL 120
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMED----------CSNKFQLSQVLKGHVAAISC 166
++ DG AA A VAL + + + + +S
Sbjct: 121 HLLNHDGNIIDAASIAAIVALCHFRRPDVSVQGDEVTLYTPEERDPVPLSIHHMPICVSF 180
Query: 167 GMLCGYPIV--DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAK 224
+ D + E+ +D M I +Q S +D +A
Sbjct: 181 AFFQQGTYLLVDPNEREERVMDGLLVIAMNKHREICTIQSSGGIMLL-KDQVLRCSKIAG 239
Query: 225 DRIADLIKLQKDVISNE 241
++A++ +L + N+
Sbjct: 240 VKVAEITELILKALEND 256
>gi|70794772|ref|NP_001020577.1| exosome complex component RRP45 [Rattus norvegicus]
gi|81918190|sp|Q4QR75|EXOS9_RAT RecName: Full=Exosome complex component RRP45; AltName:
Full=Exosome component 9
gi|67678411|gb|AAH97413.1| Exosome component 9 [Rattus norvegicus]
gi|149048739|gb|EDM01280.1| exosome component 9, isoform CRA_b [Rattus norvegicus]
gi|149048740|gb|EDM01281.1| exosome component 9, isoform CRA_b [Rattus norvegicus]
Length = 437
Score = 78.0 bits (190), Expect = 1e-12, Method: Composition-based stats.
Identities = 46/257 (17%), Positives = 81/257 (31%), Gaps = 24/257 (9%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
RL GRQ R I ++ G C+V+ G T +L + E V + G +
Sbjct: 23 RLDGRQTYDYRNIRISFGTD---YGCCIVELGKTRVLGQVSCEL-VSPKLNRATEGILFF 78
Query: 62 EYGMLPRSTGNRVKREAVS-----GRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
+ + R R + I VV + QI +D
Sbjct: 79 NLELSQMAAPAFEPGRQSDLLVKLNRLLERCLRNSKCIDTESLCVVAGEKV--WQIRVDL 136
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMED----------CSNKFQLSQVLKGHVAAISC 166
++ DG AA A VAL + + + + +S
Sbjct: 137 HLLNHDGNIIDAASIAAIVALCHFRRPDVSVQGEEVTLYTPEERDPVPLSIHHMPICVSF 196
Query: 167 GMLCGYPIV--DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAK 224
+ D + E+ +D M I +Q S +D F +A
Sbjct: 197 AFFQQGTYLLVDPNEREERVMDGLLVIAMNKHREICTIQSSGGIMLL-KDQVFRCSKIAG 255
Query: 225 DRIADLIKLQKDVISNE 241
++A++ +L + + N+
Sbjct: 256 VKVAEITELIQKALEND 272
>gi|194757229|ref|XP_001960867.1| GF11284 [Drosophila ananassae]
gi|190622165|gb|EDV37689.1| GF11284 [Drosophila ananassae]
Length = 296
Score = 78.0 bits (190), Expect = 1e-12, Method: Composition-based stats.
Identities = 41/261 (15%), Positives = 67/261 (25%), Gaps = 22/261 (8%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
R GR R + L V A GS ++ +T +L E VP + ++G +
Sbjct: 22 FRCDGRSRRDYRPMELETGVVSNASGSARLRLANTDILVGVKTEIDVPSPLAP-EYGKLE 80
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQII---IDCD 117
+T + R Q L + +Q ID
Sbjct: 81 FFVDCSANATPDFEGRGGSDLAQELILSLQNAYESPQAFDYRSLCLIPGQQCWKLYIDIL 140
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMED-------CSNKFQLSQVLKGHVAAISCGMLC 170
V++ G A A AL + ++ I L
Sbjct: 141 VLECGGNLHDAVSLAAKAALFNTKLPRVTATLLDAGITDLIISDNPYDCTRIGIETAPLL 200
Query: 171 GYPIVDLDY--------GEDSTIDVDANFVMTDSGH--IVEVQGSAERATFSQDHFFAML 220
DY E + V +G + + + +D L
Sbjct: 201 VTVCKIGDYCLVDPTAEEEGCSTVSIVVSVSMRNGEPYLSGTHMTG-GGSMHRDTMQNCL 259
Query: 221 NLAKDRIADLIKLQKDVISNE 241
L L L ++ E
Sbjct: 260 QLGLSIGEQLNTLLTKMLKQE 280
>gi|581223|emb|CAA25332.1| unnamed protein product [Escherichia coli]
Length = 196
Score = 78.0 bits (190), Expect = 1e-12, Method: Composition-based stats.
Identities = 33/199 (16%), Positives = 64/199 (32%), Gaps = 25/199 (12%)
Query: 14 ISLTRRV-SKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----HGWITAEYGMLPR 68
++L + ++ A + +V DT + T ++K + T G +P
Sbjct: 16 VTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVNYQERTYAAGRIPG 75
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
S R GR I R+I R +R + + Q+I +
Sbjct: 76 SFFRR------EGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVNPDIV 129
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+ GA A G + A G + +++ E +D
Sbjct: 130 AMIGASAA-------------LSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLD 176
Query: 189 ANFVMTDSGHIVEVQGSAE 207
T++ ++ V+ A+
Sbjct: 177 LVVAGTEA-AVLMVESEAQ 194
>gi|332244450|ref|XP_003271387.1| PREDICTED: exosome complex exonuclease RRP45 isoform 1 [Nomascus
leucogenys]
Length = 439
Score = 78.0 bits (190), Expect = 1e-12, Method: Composition-based stats.
Identities = 44/257 (17%), Positives = 79/257 (30%), Gaps = 24/257 (9%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
RL GRQ R I ++ G C+V+ G T +L + E V + G +
Sbjct: 23 RLDGRQTYDYRNIRISFGTD---YGCCIVELGKTRVLGQVSCEL-VSPKLNRATEGILFF 78
Query: 62 EYGMLPRSTGNRVKREAVS-----GRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
+ + R R + I VV + QI +D
Sbjct: 79 NLELSQMAAPAFEPGRQSDLLVKLNRLLERCLRNSKCIDTESLCVVAGEKV--WQIRVDL 136
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMED----------CSNKFQLSQVLKGHVAAISC 166
++ DG AA A V+L + + + + +S
Sbjct: 137 HLLNHDGNIIDAASIAAIVSLCHFRRPDVSVQGDEVTLYTPEERDPVPLSIHHMPICVSF 196
Query: 167 GMLCGYPIV--DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAK 224
+ D + E+ +D M I +Q S +D +A
Sbjct: 197 AFFQQGTYLLVDPNEREERVMDGLLVIAMNKHREICTIQSSGGIMLL-KDQVLRCSKIAG 255
Query: 225 DRIADLIKLQKDVISNE 241
++A++ +L + N+
Sbjct: 256 VKVAEITELILKALEND 272
>gi|332820219|ref|XP_001154217.2| PREDICTED: exosome complex component RRP45 isoform 7 [Pan
troglodytes]
Length = 392
Score = 78.0 bits (190), Expect = 1e-12, Method: Composition-based stats.
Identities = 45/257 (17%), Positives = 79/257 (30%), Gaps = 24/257 (9%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
RL GRQ R I ++ G C+V+ G T +L + E V + G +
Sbjct: 23 RLDGRQTYDYRNIRISFGTD---YGCCIVELGKTRVLGQVSCEL-VSPKLNRATEGILFF 78
Query: 62 EYGMLPRSTGNRVKREAVS-----GRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
+ + R R + I VV + QI +D
Sbjct: 79 NLELSQMAAPAFEPGRQSDLLVKLNRLLERCLRNSKCIDTESLCVVAGEKV--WQIRVDL 136
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMED----------CSNKFQLSQVLKGHVAAISC 166
++ DG AA A VAL + + + + +S
Sbjct: 137 HLLNHDGNIIDAASIAAIVALCHFRRPDVSVQGDEVTLYTPEERDPVPLSIHHMPICVSF 196
Query: 167 GMLCGYPIV--DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAK 224
+ D + E+ +D M I +Q S +D +A
Sbjct: 197 AFFQQGTYLLVDPNEREERVMDGLLVIAMNKHREICTIQSSGGIMLL-KDQVLRCSKIAG 255
Query: 225 DRIADLIKLQKDVISNE 241
++A++ +L + N+
Sbjct: 256 VKVAEITELILKALEND 272
>gi|332244452|ref|XP_003271388.1| PREDICTED: exosome complex exonuclease RRP45 isoform 2 [Nomascus
leucogenys]
Length = 456
Score = 78.0 bits (190), Expect = 1e-12, Method: Composition-based stats.
Identities = 44/257 (17%), Positives = 79/257 (30%), Gaps = 24/257 (9%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
RL GRQ R I ++ G C+V+ G T +L + E V + G +
Sbjct: 23 RLDGRQTYDYRNIRISFGTD---YGCCIVELGKTRVLGQVSCEL-VSPKLNRATEGILFF 78
Query: 62 EYGMLPRSTGNRVKREAVS-----GRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
+ + R R + I VV + QI +D
Sbjct: 79 NLELSQMAAPAFEPGRQSDLLVKLNRLLERCLRNSKCIDTESLCVVAGEKV--WQIRVDL 136
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMED----------CSNKFQLSQVLKGHVAAISC 166
++ DG AA A V+L + + + + +S
Sbjct: 137 HLLNHDGNIIDAASIAAIVSLCHFRRPDVSVQGDEVTLYTPEERDPVPLSIHHMPICVSF 196
Query: 167 GMLCGYPIV--DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAK 224
+ D + E+ +D M I +Q S +D +A
Sbjct: 197 AFFQQGTYLLVDPNEREERVMDGLLVIAMNKHREICTIQSSGGIMLL-KDQVLRCSKIAG 255
Query: 225 DRIADLIKLQKDVISNE 241
++A++ +L + N+
Sbjct: 256 VKVAEITELILKALEND 272
>gi|157169424|ref|XP_001651510.1| exosome complex exonuclease rrp42 (ribosomal RNA processing protein
42 [Aedes aegypti]
gi|108878402|gb|EAT42627.1| exosome complex exonuclease rrp42 (ribosomal RNA processing protein
42 [Aedes aegypti]
Length = 299
Score = 78.0 bits (190), Expect = 1e-12, Method: Composition-based stats.
Identities = 35/259 (13%), Positives = 73/259 (28%), Gaps = 23/259 (8%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R GR R + L + +A GS ++ +T +L + P K G I
Sbjct: 23 RNDGRTNRDYRPMELETDIVVHAMGSARLRLANTDILVAVKADIDAP-SPDRPKEGKIEF 81
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRA---LRSVVDLSALGSRQIIIDCDV 118
+T + R + + + + L + L+ ++ +D +
Sbjct: 82 FVDCSANATPDFEGRGGEELATEISNTLSKAYLSQQAFDLSPLCILAKHQCWKLYVDILI 141
Query: 119 IQADGGTRTAAITGAWVALHDCLQHMEDC-------SNKFQLSQVLKGH-------VAAI 164
++ G A AL+ + +
Sbjct: 142 LECGGNLFDAVSLAVKAALYSTKLPRVSSAELDGGAMDIILSDDPYDCERLNIQTAPLLV 201
Query: 165 SCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGH----IVEVQGSAERATFSQDHFFAML 220
+ + Y +VD E+ + ++ + ++ S E +F D L
Sbjct: 202 TVCKIGDYCVVDPSAEEEECSAISVVIGVSRKNGGKSSVTSIRTSGE-GSFHSDTLMKSL 260
Query: 221 NLAKDRIADLIKLQKDVIS 239
+L L K +
Sbjct: 261 DLGVSAATYLDKALMAALK 279
>gi|148703131|gb|EDL35078.1| exosome component 9, isoform CRA_a [Mus musculus]
gi|148703133|gb|EDL35080.1| exosome component 9, isoform CRA_a [Mus musculus]
Length = 437
Score = 78.0 bits (190), Expect = 1e-12, Method: Composition-based stats.
Identities = 46/257 (17%), Positives = 81/257 (31%), Gaps = 24/257 (9%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
RL GRQ R I ++ G C+V+ G T +L + E V + G +
Sbjct: 23 RLDGRQTYDYRNIRISFGTD---YGCCIVELGKTRVLGQVSCEL-VSPKLNRATEGILFF 78
Query: 62 EYGMLPRSTGNRVKREAVS-----GRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
+ + R R + I VV + QI +D
Sbjct: 79 NLELSQMAAPAFEPGRQSDLLVKLNRLLERCLRNSKCIDTESLCVVAGEKV--WQIRVDL 136
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMED----------CSNKFQLSQVLKGHVAAISC 166
++ DG AA A VAL + + + + +S
Sbjct: 137 HLLNHDGNIIDAASIAAIVALCHFRRPDVSVQGEEVTLYTPEERDPVPLSIHHMPICVSF 196
Query: 167 GMLCGYPIV--DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAK 224
+ D + E+ +D M I +Q S +D F +A
Sbjct: 197 AFFQQGTYLLVDPNEREERVMDGLLVIAMNKHREICTIQSSGGIMLL-KDQVFRCSKIAG 255
Query: 225 DRIADLIKLQKDVISNE 241
++A++ +L + + N+
Sbjct: 256 VKVAEITELIQKALEND 272
>gi|187957240|gb|AAI58076.1| Exosc9 protein [Mus musculus]
Length = 438
Score = 77.6 bits (189), Expect = 1e-12, Method: Composition-based stats.
Identities = 46/257 (17%), Positives = 81/257 (31%), Gaps = 24/257 (9%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
RL GRQ R I ++ G C+V+ G T +L + E V + G +
Sbjct: 23 RLDGRQTYDYRNIRISFGTD---YGCCIVELGKTRVLGQVSCEL-VSPKLNRATEGILFF 78
Query: 62 EYGMLPRSTGNRVKREAVS-----GRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
+ + R R + I VV + QI +D
Sbjct: 79 NLELSQMAAPAFEPGRQSDLLVKLNRLLERCLRNSKCIDTESLCVVAGEKV--WQIRVDL 136
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMED----------CSNKFQLSQVLKGHVAAISC 166
++ DG AA A VAL + + + + +S
Sbjct: 137 HLLNHDGNIIDAASIAAIVALCHFRRPDVSVQGEEVTLYTPEERDPVPLSIHHMPICVSF 196
Query: 167 GMLCGYPIV--DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAK 224
+ D + E+ +D M I +Q S +D F +A
Sbjct: 197 AFFQQGTYLLVDPNEREERVMDGLLVIAMNKHREICTIQSSGGIMLL-KDQVFRCSKIAG 255
Query: 225 DRIADLIKLQKDVISNE 241
++A++ +L + + N+
Sbjct: 256 VKVAEITELIQKALEND 272
>gi|9506981|ref|NP_062266.1| exosome complex exonuclease RRP45 [Mus musculus]
gi|14285679|sp|Q9JHI7|EXOS9_MOUSE RecName: Full=Exosome complex exonuclease RRP45; AltName:
Full=Autoantigen PM/Scl 1; AltName: Full=Exosome
component 9; AltName: Full=P75 polymyositis-scleroderma
overlap syndrome-associated autoantigen; AltName:
Full=Polymyositis/scleroderma autoantigen 1; AltName:
Full=Polymyositis/scleroderma autoantigen 75 kDa;
Short=PM/Scl-75
gi|8132103|gb|AAF73218.1|AF152841_1 polymyositis scleroderma overlap syndrome (PM-SCL) antigen 1 a [Mus
musculus]
gi|8132105|gb|AAF73219.1|AF152842_1 polymyositis scleroderma overlap syndrome (PM-SCL) antigen 1 b [Mus
musculus]
gi|13542847|gb|AAH05622.1| Exosome component 9 [Mus musculus]
gi|30354433|gb|AAH52156.1| Exosome component 9 [Mus musculus]
Length = 438
Score = 77.6 bits (189), Expect = 1e-12, Method: Composition-based stats.
Identities = 46/257 (17%), Positives = 81/257 (31%), Gaps = 24/257 (9%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
RL GRQ R I ++ G C+V+ G T +L + E V + G +
Sbjct: 23 RLDGRQTYDYRNIRISFGTD---YGCCIVELGKTRVLGQVSCEL-VSPKLNRATEGILFF 78
Query: 62 EYGMLPRSTGNRVKREAVS-----GRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
+ + R R + I VV + QI +D
Sbjct: 79 NLELSQMAAPAFEPGRQSDLLVKLNRLLERCLRNSKCIDTESLCVVAGEKV--WQIRVDL 136
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMED----------CSNKFQLSQVLKGHVAAISC 166
++ DG AA A VAL + + + + +S
Sbjct: 137 HLLNHDGNIIDAASIAAIVALCHFRRPDVSVQGEEVTLYTPEERDPVPLSIHHMPICVSF 196
Query: 167 GMLCGYPIV--DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAK 224
+ D + E+ +D M I +Q S +D F +A
Sbjct: 197 AFFQQGTYLLVDPNEREERVMDGLLVIAMNKHREICTIQSSGGIMLL-KDQVFRCSKIAG 255
Query: 225 DRIADLIKLQKDVISNE 241
++A++ +L + + N+
Sbjct: 256 VKVAEITELIQKALEND 272
>gi|114595908|ref|XP_001154164.1| PREDICTED: exosome complex component RRP45 isoform 6 [Pan
troglodytes]
Length = 439
Score = 77.6 bits (189), Expect = 1e-12, Method: Composition-based stats.
Identities = 45/257 (17%), Positives = 79/257 (30%), Gaps = 24/257 (9%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
RL GRQ R I ++ G C+V+ G T +L + E V + G +
Sbjct: 23 RLDGRQTYDYRNIRISFGTD---YGCCIVELGKTRVLGQVSCEL-VSPKLNRATEGILFF 78
Query: 62 EYGMLPRSTGNRVKREAVS-----GRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
+ + R R + I VV + QI +D
Sbjct: 79 NLELSQMAAPAFEPGRQSDLLVKLNRLLERCLRNSKCIDTESLCVVAGEKV--WQIRVDL 136
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMED----------CSNKFQLSQVLKGHVAAISC 166
++ DG AA A VAL + + + + +S
Sbjct: 137 HLLNHDGNIIDAASIAAIVALCHFRRPDVSVQGDEVTLYTPEERDPVPLSIHHMPICVSF 196
Query: 167 GMLCGYPIV--DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAK 224
+ D + E+ +D M I +Q S +D +A
Sbjct: 197 AFFQQGTYLLVDPNEREERVMDGLLVIAMNKHREICTIQSSGGIMLL-KDQVLRCSKIAG 255
Query: 225 DRIADLIKLQKDVISNE 241
++A++ +L + N+
Sbjct: 256 VKVAEITELILKALEND 272
>gi|114595906|ref|XP_001154031.1| PREDICTED: exosome complex component RRP45 isoform 4 [Pan
troglodytes]
Length = 456
Score = 77.6 bits (189), Expect = 1e-12, Method: Composition-based stats.
Identities = 45/257 (17%), Positives = 79/257 (30%), Gaps = 24/257 (9%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
RL GRQ R I ++ G C+V+ G T +L + E V + G +
Sbjct: 23 RLDGRQTYDYRNIRISFGTD---YGCCIVELGKTRVLGQVSCEL-VSPKLNRATEGILFF 78
Query: 62 EYGMLPRSTGNRVKREAVS-----GRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
+ + R R + I VV + QI +D
Sbjct: 79 NLELSQMAAPAFEPGRQSDLLVKLNRLLERCLRNSKCIDTESLCVVAGEKV--WQIRVDL 136
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMED----------CSNKFQLSQVLKGHVAAISC 166
++ DG AA A VAL + + + + +S
Sbjct: 137 HLLNHDGNIIDAASIAAIVALCHFRRPDVSVQGDEVTLYTPEERDPVPLSIHHMPICVSF 196
Query: 167 GMLCGYPIV--DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAK 224
+ D + E+ +D M I +Q S +D +A
Sbjct: 197 AFFQQGTYLLVDPNEREERVMDGLLVIAMNKHREICTIQSSGGIMLL-KDQVLRCSKIAG 255
Query: 225 DRIADLIKLQKDVISNE 241
++A++ +L + N+
Sbjct: 256 VKVAEITELILKALEND 272
>gi|24642649|ref|NP_573163.1| Rrp45 [Drosophila melanogaster]
gi|19527801|gb|AAL90015.1| AT07738p [Drosophila melanogaster]
gi|22832411|gb|AAF48665.2| Rrp45 [Drosophila melanogaster]
gi|220949552|gb|ACL87319.1| Rrp45-PA [synthetic construct]
gi|220958432|gb|ACL91759.1| Rrp45-PA [synthetic construct]
Length = 412
Score = 77.6 bits (189), Expect = 1e-12, Method: Composition-based stats.
Identities = 41/252 (16%), Positives = 75/252 (29%), Gaps = 18/252 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
RL GR+ N+ R++ LT GS V GDT +L T E P R +
Sbjct: 29 RLDGRRSNESRDVELTFG---KDWGSVAVSMGDTKVLAQVTCEMGPPALSRPNEGKIHLN 85
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRA--LRSVVDLSALGSRQIIIDCDVI 119
Y + E R+ L S+ I ++ +V+
Sbjct: 86 VYLGGVAFLDEAHTTHDQRSLKLNSLLERTFRSSRSIDLESLCVAVEKHVWCIRVNVNVL 145
Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQ----------LSQVLKGHVAAISCGML 169
DG A+ AL + + + + + +++ +
Sbjct: 146 NHDGNLYDASTIATLAALMHFRRPDVWYKDGELRIFKKKEREFIPLLFHHYPVSVTYCVY 205
Query: 170 CG--YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRI 227
PI+D E++ D + + T ++ N A R
Sbjct: 206 KSSVQPILDPTLLEENAADSVIVLSFNSFQELCSLTAGGTAPTNARIIMQCARNAAV-RC 264
Query: 228 ADLIKLQKDVIS 239
L+ + ++
Sbjct: 265 KSLLNFVRKALA 276
>gi|12847890|dbj|BAB27749.1| unnamed protein product [Mus musculus]
Length = 395
Score = 77.6 bits (189), Expect = 1e-12, Method: Composition-based stats.
Identities = 46/257 (17%), Positives = 81/257 (31%), Gaps = 24/257 (9%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
RL GRQ R I ++ G C+V+ G T +L + E V + G +
Sbjct: 23 RLDGRQTYDYRNIRISFGTD---YGCCIVELGKTRVLGQVSCEL-VSPKLNRATEGILFF 78
Query: 62 EYGMLPRSTGNRVKREAVS-----GRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
+ + R R + I VV + QI +D
Sbjct: 79 NLELSQMAAPAFEPGRQSDLLVKLNRLLERCLRNSKCIDTESLCVVAGEKV--WQIRVDL 136
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMED----------CSNKFQLSQVLKGHVAAISC 166
++ DG AA A VAL + + + + +S
Sbjct: 137 HLLNHDGNIIDAASIAAIVALCHFRRPDVSVQGEEVTLYTPEERDPVPLSIHHMPICVSF 196
Query: 167 GMLCGYPIV--DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAK 224
+ D + E+ +D M I +Q S +D F +A
Sbjct: 197 AFFQQGTYLLVDPNEREERVMDGLLVIAMNKHREICTIQSSGGIMLL-KDQVFRCSKIAG 255
Query: 225 DRIADLIKLQKDVISNE 241
++A++ +L + + N+
Sbjct: 256 VKVAEITELIQKALEND 272
>gi|169778981|ref|XP_001823955.1| exosome complex endonuclease 1 [Aspergillus oryzae RIB40]
gi|238499561|ref|XP_002381015.1| exosome complex endonuclease 1, putative [Aspergillus flavus
NRRL3357]
gi|83772694|dbj|BAE62822.1| unnamed protein product [Aspergillus oryzae]
gi|220692768|gb|EED49114.1| exosome complex endonuclease 1, putative [Aspergillus flavus
NRRL3357]
Length = 269
Score = 77.6 bits (189), Expect = 1e-12, Method: Composition-based stats.
Identities = 36/258 (13%), Positives = 77/258 (29%), Gaps = 27/258 (10%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWI-----RNTK 55
+RL GR+ N++R + + + GS + G+T ++ + + +
Sbjct: 14 LRLDGRRWNELRLLQAQISTNPASSGSSYLAMGNTTIMCSVHGPAEGRRGDATGGAAGSS 73
Query: 56 HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115
+ + + + +R +R S +Q I + A +S + I I
Sbjct: 74 GAVVEVDVNVAGFAGVDRKRRAGGSDKQS---SRIATTLRAAFQSHLHTYLYPHSTISIH 130
Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIV 175
V+ ADG AAI +AL D M + G + +
Sbjct: 131 VSVLSADGSLLAAAINACTLALVDAGIPMPGLLCGCTAG--MSGSASTPRDPRNDELDPL 188
Query: 176 DLDYGEDSTIDVDANFVMT--------------DSGHIVEVQGSAERATFSQDHFFAMLN 221
+ T + + + ++ + L
Sbjct: 189 LDLSLPEEQELPFLTVGTTTSVPVGENAMDDDEEDMKVSMLNMDSKVHCTYVETM---LA 245
Query: 222 LAKDRIADLIKLQKDVIS 239
+ D + ++ + VI
Sbjct: 246 VGIDGCNQIREILEGVIK 263
>gi|170091308|ref|XP_001876876.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164648369|gb|EDR12612.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 276
Score = 77.6 bits (189), Expect = 1e-12, Method: Composition-based stats.
Identities = 40/249 (16%), Positives = 82/249 (32%), Gaps = 23/249 (9%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+R GR N R++++ A+GS LV+ G+T ++ E P G++
Sbjct: 27 VRPDGRPLNVARDLAVNVGSISTADGSALVRLGNTTVVCGVKAEIAEPELDEGV-RGFLV 85
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGS---RQIIIDCD 117
+ + Q + ++ + + LS + + +D
Sbjct: 86 PNLDLPAMCSPRFKPGPPSEEAQVLSDRLNDALVASNILPLTSLSIHPNKAAWVLYVDAI 145
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHM-----------EDCSNKFQLSQVLKGHVAAISC 166
I DG AA+ AL + K L +S
Sbjct: 146 CINYDGNVFDAALIAMVEALRNTQLPKATYDEETGRTTCSRKIKVPLELNHTSLPVPLSF 205
Query: 167 GMLCGYPIV-DLDYGEDSTIDVDANFVMTDS--GHIVEV-QGSAERATFSQDHFFAMLNL 222
G+ ++ D E+ +D + +M+++ ++ V Q A D +
Sbjct: 206 GVFDSTHVLADPTSFEEPLLDTTISIIMSNANPDRLISVSQLGAGGN----DALLTCVEA 261
Query: 223 AKDRIADLI 231
A+ R +++
Sbjct: 262 ARVRCREIV 270
>gi|114595910|ref|XP_001153969.1| PREDICTED: exosome component 9 isoform 3 [Pan troglodytes]
Length = 402
Score = 77.6 bits (189), Expect = 2e-12, Method: Composition-based stats.
Identities = 45/257 (17%), Positives = 79/257 (30%), Gaps = 24/257 (9%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
RL GRQ R I ++ G C+V+ G T +L + E V + G +
Sbjct: 23 RLDGRQTYDYRNIRISFGTD---YGCCIVELGKTRVLGQVSCEL-VSPKLNRATEGILFF 78
Query: 62 EYGMLPRSTGNRVKREAVS-----GRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
+ + R R + I VV + QI +D
Sbjct: 79 NLELSQMAAPAFEPGRQSDLLVKLNRLLERCLRNSKCIDTESLCVVAGEKV--WQIRVDL 136
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMED----------CSNKFQLSQVLKGHVAAISC 166
++ DG AA A VAL + + + + +S
Sbjct: 137 HLLNHDGNIIDAASIAAIVALCHFRRPDVSVQGDEVTLYTPEERDPVPLSIHHMPICVSF 196
Query: 167 GMLCGYPIV--DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAK 224
+ D + E+ +D M I +Q S +D +A
Sbjct: 197 AFFQQGTYLLVDPNEREERVMDGLLVIAMNKHREICTIQSSGGIMLL-KDQVLRCSKIAG 255
Query: 225 DRIADLIKLQKDVISNE 241
++A++ +L + N+
Sbjct: 256 VKVAEITELILKALEND 272
>gi|78045505|ref|NP_001030225.1| exosome complex component RRP45 [Bos taurus]
gi|122140086|sp|Q3SWZ4|EXOS9_BOVIN RecName: Full=Exosome complex component RRP45; AltName:
Full=Exosome component 9
gi|74356309|gb|AAI04588.1| Exosome component 9 [Bos taurus]
Length = 440
Score = 77.6 bits (189), Expect = 2e-12, Method: Composition-based stats.
Identities = 44/257 (17%), Positives = 78/257 (30%), Gaps = 24/257 (9%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
RL GRQ R I ++ G C+V+ G T +L + E V + G +
Sbjct: 23 RLDGRQTYDYRNIKISFGTD---YGCCIVELGKTRVLGQVSCEL-VSPKLNRATEGILFF 78
Query: 62 EYGMLPRSTGNRVKREAVS-----GRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
+ + R R + I VV + QI +D
Sbjct: 79 NLELSQMAAPAFEPGRQSDLLVKLNRLLERCLRNSKCIDTESLCVVAGEKV--WQIRVDL 136
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCS----------NKFQLSQVLKGHVAAISC 166
++ DG AA A VAL + + + + +S
Sbjct: 137 HLLNHDGNIIDAASIAAIVALCHFRRPDVSVQGDEVTLYTLEERDPVPLSIHHMPICVSF 196
Query: 167 GMLCGYPIV--DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAK 224
+ D E+ +D M I +Q S +D +A
Sbjct: 197 AFFQQGTYLLVDPSEREERVMDGLLVIAMNKHREICTIQSSGGIMLL-KDQVLRCSKIAG 255
Query: 225 DRIADLIKLQKDVISNE 241
++ ++ +L + + N+
Sbjct: 256 VKVVEITELIQKALEND 272
>gi|296486842|gb|DAA28955.1| exosome complex exonuclease RRP45 [Bos taurus]
Length = 440
Score = 77.2 bits (188), Expect = 2e-12, Method: Composition-based stats.
Identities = 44/257 (17%), Positives = 78/257 (30%), Gaps = 24/257 (9%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
RL GRQ R I ++ G C+V+ G T +L + E V + G +
Sbjct: 23 RLDGRQTYDYRNIKISFGTD---YGCCIVELGKTRVLGQVSCEL-VSPKLNRATEGILFF 78
Query: 62 EYGMLPRSTGNRVKREAVS-----GRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
+ + R R + I VV + QI +D
Sbjct: 79 NLELSQMAAPAFEPGRQSDLLVKLNRLLERCLRNSKCIDTESLCVVAGEKV--WQIRVDL 136
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCS----------NKFQLSQVLKGHVAAISC 166
++ DG AA A VAL + + + + +S
Sbjct: 137 HLLNHDGNIIDAASIAAIVALCHFRRPDVSVQGDEVTLYTLEERDPVPLSIHHMPICVSF 196
Query: 167 GMLCGYPIV--DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAK 224
+ D E+ +D M I +Q S +D +A
Sbjct: 197 AFFQQGTYLLVDPSEREERVMDGLLVIAMNKHREICTIQSSGGIMLL-KDQVLRCSKIAG 255
Query: 225 DRIADLIKLQKDVISNE 241
++ ++ +L + + N+
Sbjct: 256 VKVVEITELIQKALEND 272
>gi|68074995|ref|XP_679414.1| exosome complex exonuclease [Plasmodium berghei strain ANKA]
gi|56500153|emb|CAI00593.1| exosome complex exonuclease, putative [Plasmodium berghei]
Length = 511
Score = 77.2 bits (188), Expect = 2e-12, Method: Composition-based stats.
Identities = 36/255 (14%), Positives = 76/255 (29%), Gaps = 19/255 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+RL GR R +S+ G+ V G+T ++ T E V + + G I
Sbjct: 19 LRLDGRNFEDSRNVSI---YFLGDYGNVEVSIGNTKVVCKITSEI-VKPYDKKPNEGIIK 74
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
+ +T N + + + + E L + + ++
Sbjct: 75 INLDVESFNTYNDISKISDECLEIKNLIERIFKASNILNFESLCIIPYKKVWCLLINITV 134
Query: 121 ADGGTRTAAIT--GAWVALHDCLQHMEDCSNKFQLSQ-----------VLKGHVAAISCG 167
+ A+ AL D N + V +
Sbjct: 135 IENDGNLYDSCYLSAYSALLHFRNSSVDIDNTGNVIIDEEEVNYTSLSVHNSPILTTFAY 194
Query: 168 MLCGYPIV-DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226
+ D E+ + + + + +++ + S D + LAK R
Sbjct: 195 FNFEEICLIDPSLYEEEFMSSKLSIAINKNENLISILKPG-GLPISYDKILQGIELAKKR 253
Query: 227 IADLIKLQKDVISNE 241
+ ++K+ KD + +
Sbjct: 254 VKSILKILKDALKED 268
>gi|115446633|ref|NP_001047096.1| Os02g0550700 [Oryza sativa Japonica Group]
gi|50725756|dbj|BAD33267.1| putative polymyositis/scleroderma autoantigen 1 [Oryza sativa
Japonica Group]
gi|113536627|dbj|BAF09010.1| Os02g0550700 [Oryza sativa Japonica Group]
Length = 395
Score = 77.2 bits (188), Expect = 2e-12, Method: Composition-based stats.
Identities = 44/263 (16%), Positives = 88/263 (33%), Gaps = 33/263 (12%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+R+ GR+ R + + +GS V+ GDT ++ AT + V + G +
Sbjct: 25 LRVDGRRPFDFRRLKILFG---REDGSAEVQLGDTRVMGYATAQL-VQPYKDRPNEGTLA 80
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSA--------LGSRQI 112
P + GR G + E+ R++ R LR + +
Sbjct: 81 IFTEFSPMADPAFEP-----GRPGESAIELGRVVDRGLRESRAVDMESLCVVAGKHVWSV 135
Query: 113 IIDCDVIQADGGTRTAAITGAWVALHDCLQHM-------------EDCSNKFQLSQVLKG 159
+D ++ G AA A AL + D + L +
Sbjct: 136 RVDLHILDNGGNLIDAANIAALAALSTFRRPECTVGGEDGQQVTVHDPEVRDPLPLTIHH 195
Query: 160 HVAAISCGML--CGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFF 217
A++ ++D Y E++ + + +G + +Q + S
Sbjct: 196 LPIAVTFAYFGEGNIMVIDPTYKEEAVMGGRMTATINSNGDVCSIQKAGGEGVMS-SVIM 254
Query: 218 AMLNLAKDRIADLIKLQKDVISN 240
L +A + AD+ K+ +++
Sbjct: 255 QCLRIASVKAADITSKIKNEVNS 277
>gi|115610673|ref|XP_788833.2| PREDICTED: similar to SCL75 protein [Strongylocentrotus purpuratus]
gi|115958655|ref|XP_001193817.1| PREDICTED: similar to SCL75 protein [Strongylocentrotus purpuratus]
Length = 437
Score = 77.2 bits (188), Expect = 2e-12, Method: Composition-based stats.
Identities = 43/254 (16%), Positives = 80/254 (31%), Gaps = 18/254 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
RL GRQ R + V + G C+V GDT +L + E P R +
Sbjct: 21 RLDGRQPYDYRRTKIEFGVER---GCCMVHMGDTRILAQVSCEVVEPKENRPNEGQLFVN 77
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGS--RQIIIDCDVI 119
ST R + G + R E RA+ G +I +D V+
Sbjct: 78 LELSPMASTTFEAGRLSDYGIELNRLLERTVKDSRAVDVESLCIVAGEKVWKIRLDVHVL 137
Query: 120 QADGGTRTAAITGAWVALHDCLQHM----------EDCSNKFQLSQVLKGHVAAISCGML 169
DG +A A AL + ++ + + ++
Sbjct: 138 NHDGNILDSACLAALAALSHFRRPDVTVIGESVTIHSPQDRDPVPLNVHHIPVCVTFAFY 197
Query: 170 C--GYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRI 227
+VD E+ ++ M + +Q + ++ + ++
Sbjct: 198 HKGKRLLVDPTEKEEKVMEGTMVVGMNVHRELCTMQVTGSMLIL-KEQIIRCCQIGVVKV 256
Query: 228 ADLIKLQKDVISNE 241
++L +L K + +
Sbjct: 257 SELTELIKLALEKD 270
>gi|225023880|ref|ZP_03713072.1| hypothetical protein EIKCOROL_00746 [Eikenella corrodens ATCC
23834]
gi|224943354|gb|EEG24563.1| hypothetical protein EIKCOROL_00746 [Eikenella corrodens ATCC
23834]
Length = 167
Score = 77.2 bits (188), Expect = 2e-12, Method: Composition-based stats.
Identities = 83/158 (52%), Positives = 110/158 (69%), Gaps = 2/158 (1%)
Query: 74 VKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGA 133
++REA G+Q GR+QEIQR+IGR+LR+ VDLS LG RQI+IDCDVIQADGGTRTA+ITGA
Sbjct: 1 MRREAAQGKQSGRTQEIQRLIGRSLRAAVDLSQLGERQILIDCDVIQADGGTRTASITGA 60
Query: 134 WVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVM 193
+VALH + + ++ VAA+S G++ G P++DLDY EDS D D N VM
Sbjct: 61 YVALHLAIGKLLAA--GKLAHNPIREAVAAVSLGIVGGVPLLDLDYPEDSGCDSDINLVM 118
Query: 194 TDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231
T SG+I+E+QG+AE FS +L L + I +L+
Sbjct: 119 TASGNIIEIQGTAEGDAFSPAALTQLLALGQKGIVELL 156
>gi|222626193|gb|EEE60325.1| hypothetical protein OsJ_13416 [Oryza sativa Japonica Group]
Length = 248
Score = 77.2 bits (188), Expect = 2e-12, Method: Composition-based stats.
Identities = 36/256 (14%), Positives = 72/256 (28%), Gaps = 33/256 (12%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R GR NQ+R S TR A GS GDT +L + P + +
Sbjct: 5 RADGRNPNQLRPFSCTRNPLDRAHGSARWAQGDTIVLAAVYGPK--PGTRKGENPEKASI 62
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
E P + G+ G + +E + + R L+S+ L+ + + V+
Sbjct: 63 EVVWKPMT-----------GQIGKQEKEYEMTLKRTLQSICLLTVHPNTTTSVILQVVGN 111
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
DG + L + + L + + +
Sbjct: 112 DGSVSFCRNVLLSIVSGCLLDYEHSLVFAGIPLKHLAVAIGCGVLEDGEVILDTNKAEEQ 171
Query: 182 DSTIDVDANFV----------------MTDSGHIVEVQGSAERATFSQDHFFAMLNLAKD 225
F ++ G I + S++ +F+ +
Sbjct: 172 QLKSFAHLVFPNSRKSASSKEPNQKEEDSERGLITSI----THGVMSEEDYFSCIERGLA 227
Query: 226 RIADLIKLQKDVISNE 241
+ + + + +
Sbjct: 228 ASSRISDFMRTTLQKQ 243
>gi|146104020|ref|XP_001469709.1| exosome complex exonuclease RRP41 [Leishmania infantum]
gi|134074079|emb|CAM72821.1| putative exosome complex exonuclease rrp41 [Leishmania infantum
JPCM5]
Length = 246
Score = 77.2 bits (188), Expect = 2e-12, Method: Composition-based stats.
Identities = 36/242 (14%), Positives = 77/242 (31%), Gaps = 18/242 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+RL GR+ + R + + +GSC + G + + + +
Sbjct: 13 LRLDGRRPLEARRMDIAFSTLSACDGSCDITLGQSKVCACVFGPRESLHKQEAKHDKGLV 72
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
+ G + + + R++ + LS + QI I +V+Q
Sbjct: 73 TCEVAVAAFAGENRRNPQRRSKLSEDIGAAVVQVARSV---ILLSQYPNSQIHIYIEVLQ 129
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
DG + A + A +AL D M D + + + ++ L V
Sbjct: 130 KDGNEKIACVNAACLALIDANVAMRDAVCCIDAGILDEHMLIDLTNDELRSQCPVIAA-- 187
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK-LQKDVIS 239
F D+ +I+ ++ + D +L A++ L + + +
Sbjct: 188 ---------AFTGHDTRNIIWLE---TASRLPPDSAARLLKCAEEGATKLFETAMRKALE 235
Query: 240 NE 241
Sbjct: 236 EH 237
>gi|302791331|ref|XP_002977432.1| hypothetical protein SELMODRAFT_106958 [Selaginella moellendorffii]
gi|300154802|gb|EFJ21436.1| hypothetical protein SELMODRAFT_106958 [Selaginella moellendorffii]
Length = 288
Score = 76.8 bits (187), Expect = 2e-12, Method: Composition-based stats.
Identities = 38/261 (14%), Positives = 68/261 (26%), Gaps = 24/261 (9%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+R GR R +S+ + A GS V+ G T L+ + E P R +G I
Sbjct: 20 LRSDGRGRYHFRNLSIQVGIIPQANGSARVRLGGTDLIVSVKAELGSPRSCRP-NYGSIE 78
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRM------IGRALRSVVDLSALGSRQIII 114
+ R + G A+ +
Sbjct: 79 VMVECSATAGPEFEGRGGEDLNMELSRALQRCFVGGPSGAGAAIDLSTLGIVASKFCWEL 138
Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQL----------------SQVLK 158
D + + AL + +
Sbjct: 139 FVDCLVVNSDGNLLDALSIGAALSNTGIPSVKVTGNTASEDDADLEVGDNPDEFARLDAS 198
Query: 159 GHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFA 218
I+ + + IVD E+ + + + G I+ + +
Sbjct: 199 KVPLIITLTKIGRHYIVDATPEEEMGMSSAVSVAVNSKGLILGLTKRGDGG-LDPSVVTD 257
Query: 219 MLNLAKDRIADLIKLQKDVIS 239
M+++AK DLI L I+
Sbjct: 258 MISVAKHIARDLIVLVDTEIA 278
>gi|254585869|ref|XP_002498502.1| ZYRO0G11814p [Zygosaccharomyces rouxii]
gi|238941396|emb|CAR29569.1| ZYRO0G11814p [Zygosaccharomyces rouxii]
Length = 245
Score = 76.8 bits (187), Expect = 2e-12, Method: Composition-based stats.
Identities = 40/242 (16%), Positives = 79/242 (32%), Gaps = 21/242 (8%)
Query: 1 MRLSGRQENQMREISLTRRVSKY-AEGSCLVKFGDTHLLTTATLEEKVP-MWIRNTKHGW 58
+R+ GR+ N++R + + A+GS ++ G+ ++T ++ +
Sbjct: 12 LRVDGRRWNELRRFDCSINTHSHAADGSSYLEQGNNKIITLVKGPKEPSLRSQMDPTKAL 71
Query: 59 ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDV 118
+ + S R K + R R EIQ + R V L I I+ V
Sbjct: 72 LKVSVNITKFSKTERSKTSHKNER---RVLEIQTALTRTFNKNVMLHIYPRTLIDIEIHV 128
Query: 119 IQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLD 178
+Q DGG I G +AL D M D + + + + +
Sbjct: 129 LQQDGGLVGTLINGITLALIDAGIAMFDYISGVSVGLYDTTPLLEV-----------NSL 177
Query: 179 YGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
+ T+ ++ V+ D ++L + + +L +
Sbjct: 178 EENVMSSVTLGVVGKTEKLSLLLVE-----DKIPLDRLESVLAIGIAGAHRVRELMDSEL 232
Query: 239 SN 240
Sbjct: 233 RK 234
>gi|332376931|gb|AEE63605.1| unknown [Dendroctonus ponderosae]
Length = 269
Score = 76.8 bits (187), Expect = 2e-12, Method: Composition-based stats.
Identities = 43/227 (18%), Positives = 85/227 (37%), Gaps = 16/227 (7%)
Query: 12 REISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG 71
R+I L V A+GS ++ GDT ++ + ++P I G + E+ P S
Sbjct: 47 RKIYLQTGVITQAKGSAYIEIGDTKVIVSVFDPREIPNRIDYGLKGEVYCEFKYAPFSCK 106
Query: 72 NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAIT 131
R+ + + ++ ++ +AL S V L L + Q+ + V++ DG +AAI
Sbjct: 107 KRMMHQQNN-----EEKQSSDIMRKALESTVCLHELPNFQVDVYAMVLEEDGSALSAAII 161
Query: 132 GAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANF 191
VAL M D + G L P D S +
Sbjct: 162 AGGVALTLAGVPMYDQITSVT---------LGVRNGALIEPPFDDSGKEPPSCDNGLVVL 212
Query: 192 VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
S ++ +R S+++ + + + +++ + + +
Sbjct: 213 SKLHSQ--TQICQFYQRGFMSKENVKKCIEVLSKQCDNIVPIVQKCL 257
>gi|114595912|ref|XP_001154097.1| PREDICTED: exosome component 9 isoform 5 [Pan troglodytes]
Length = 363
Score = 76.8 bits (187), Expect = 2e-12, Method: Composition-based stats.
Identities = 45/257 (17%), Positives = 79/257 (30%), Gaps = 24/257 (9%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
RL GRQ R I ++ G C+V+ G T +L + E V + G +
Sbjct: 23 RLDGRQTYDYRNIRISFGTD---YGCCIVELGKTRVLGQVSCEL-VSPKLNRATEGILFF 78
Query: 62 EYGMLPRSTGNRVKREAVS-----GRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
+ + R R + I VV + QI +D
Sbjct: 79 NLELSQMAAPAFEPGRQSDLLVKLNRLLERCLRNSKCIDTESLCVVAGEKV--WQIRVDL 136
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMED----------CSNKFQLSQVLKGHVAAISC 166
++ DG AA A VAL + + + + +S
Sbjct: 137 HLLNHDGNIIDAASIAAIVALCHFRRPDVSVQGDEVTLYTPEERDPVPLSIHHMPICVSF 196
Query: 167 GMLCGYPIV--DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAK 224
+ D + E+ +D M I +Q S +D +A
Sbjct: 197 AFFQQGTYLLVDPNEREERVMDGLLVIAMNKHREICTIQSSGGIMLL-KDQVLRCSKIAG 255
Query: 225 DRIADLIKLQKDVISNE 241
++A++ +L + N+
Sbjct: 256 VKVAEITELILKALEND 272
>gi|290990431|ref|XP_002677840.1| 3' exoribonuclease domain-containing protein [Naegleria gruberi]
gi|284091449|gb|EFC45096.1| 3' exoribonuclease domain-containing protein [Naegleria gruberi]
Length = 367
Score = 76.8 bits (187), Expect = 2e-12, Method: Composition-based stats.
Identities = 37/267 (13%), Positives = 75/267 (28%), Gaps = 30/267 (11%)
Query: 1 MRLSGRQENQMREISLTRRVSKY----AEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKH 56
+R+ GR R I + S G V G+T L + P R +
Sbjct: 58 LRIDGRDLYDYRSIEFSLPTSSQELAVPSGQVQVTLGNTIALGIVSCSIMEPYMDRPNE- 116
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSV--------VDLSALG 108
+ + + G+R + +Q EI R+I R+LR ++
Sbjct: 117 --GFLTFQIDFSTVGSRPIGTKQTSQQRELCIEIGRVIDRSLRGSRSIDTEALCIIAGRK 174
Query: 109 SRQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHME--------------DCSNKFQLS 154
+ +D ++Q DG A AL + +
Sbjct: 175 VWSLRVDVHILQDDGNVFDCCHLAAVAALLHFKRPEVTIEGDRVVVHTVQDRQPVPLSVH 234
Query: 155 QVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQD 214
+ + +VD E+ + + + +Q ++D
Sbjct: 235 HIPICTSFSFFDHDSATLFVVDPCKKEEMIAEGFMTIALNAHKELCAIQKGG-GLALTKD 293
Query: 215 HFFAMLNLAKDRIADLIKLQKDVISNE 241
+ + ++ + K + E
Sbjct: 294 QILECAQIGSVKSKEITETLKQFLQAE 320
>gi|154419828|ref|XP_001582930.1| 3' exoribonuclease family, domain 1 containing protein [Trichomonas
vaginalis G3]
gi|121917168|gb|EAY21944.1| 3' exoribonuclease family, domain 1 containing protein [Trichomonas
vaginalis G3]
Length = 241
Score = 76.8 bits (187), Expect = 2e-12, Method: Composition-based stats.
Identities = 43/239 (17%), Positives = 74/239 (30%), Gaps = 22/239 (9%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+R+ GR N+MR + GS K G T ++ N +T
Sbjct: 10 LRIDGRPPNEMRLVEAKIGTIPGCTGSSHFKIGQTEVIAQIFGPRD-NRSGDNAAEIRVT 68
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
EY + GR+ R + +I+I VIQ
Sbjct: 69 FEYADFAKVPHASDTSMTRRGRESEVIM------KRTFEEAIKRELFPHSKILIAITVIQ 122
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
DG ++AAI A +AL D M D ++ +
Sbjct: 123 DDGSCQSAAINAATLALIDAGIPMFDFVVSMTVALYDD------------KCFLDAGRAE 170
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
++ V + + I+ + +A + + A A D +L + +DV+
Sbjct: 171 SNARFPVLEVSIFPSTSEILSMNLTARIEPQASKNLMAA---AIDGCKELHAIMQDVVR 226
>gi|122920907|pdb|2NN6|A Chain A, Structure Of The Human Rna Exosome Composed Of Rrp41,
Rrp45, Rrp46, Rrp43, Mtr3, Rrp42, Csl4, Rrp4, And Rrp40
Length = 358
Score = 76.8 bits (187), Expect = 2e-12, Method: Composition-based stats.
Identities = 45/257 (17%), Positives = 79/257 (30%), Gaps = 24/257 (9%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
RL GRQ R I ++ G C+V+ G T +L + E V + G +
Sbjct: 40 RLDGRQTYDYRNIRISFGTD---YGCCIVELGKTRVLGQVSCEL-VSPKLNRATEGILFF 95
Query: 62 EYGMLPRSTGNRVKREAVS-----GRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
+ + R R + I VV + QI +D
Sbjct: 96 NLELSQMAAPAFEPGRQSDLLVKLNRLMERCLRNSKCIDTESLCVVAGEKV--WQIRVDL 153
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMED----------CSNKFQLSQVLKGHVAAISC 166
++ DG AA A VAL + + + + +S
Sbjct: 154 HLLNHDGNIIDAASIAAIVALCHFRRPDVSVQGDEVTLYTPEERDPVPLSIHHMPICVSF 213
Query: 167 GMLCGYPIV--DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAK 224
+ D + E+ +D M I +Q S +D +A
Sbjct: 214 AFFQQGTYLLVDPNEREERVMDGLLVIAMNKHREICTIQSSGGIMLL-KDQVLRCSKIAG 272
Query: 225 DRIADLIKLQKDVISNE 241
++A++ +L + N+
Sbjct: 273 VKVAEITELILKALEND 289
>gi|260785852|ref|XP_002587974.1| hypothetical protein BRAFLDRAFT_124886 [Branchiostoma floridae]
gi|229273129|gb|EEN43985.1| hypothetical protein BRAFLDRAFT_124886 [Branchiostoma floridae]
Length = 1444
Score = 76.8 bits (187), Expect = 3e-12, Method: Composition-based stats.
Identities = 39/234 (16%), Positives = 71/234 (30%), Gaps = 14/234 (5%)
Query: 5 GRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYG 64
GR+ R L V A GS ++ G T ++ ++ T G + E
Sbjct: 1198 GRRTAGPRT-DLHAGVVSQATGSAYIEMGQTKVIAAVYGPREIARREEFTMKGRLCCELK 1256
Query: 65 MLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGG 124
+ R + + + G ++ +AL V L Q+ + V+Q DG
Sbjct: 1257 FATFACRRRRQHIQDNQEKDG-----ALIVLQALEPAVCLDRFPKSQVDVYITVLQDDGS 1311
Query: 125 TRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDST 184
AAIT A L D M D + Q + + S G + +
Sbjct: 1312 ALAAAITCAAAGLADAGVMMYDIVAGCSVRQCGERQLLDPSVGE-----ELSQEGESAED 1366
Query: 185 IDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
+ ++ + + Q + + + KD +
Sbjct: 1367 HGMVTVGLLPSLNQVSALTLDGH---LQQQTAVQAVKTCIGGCQGIYPILKDCL 1417
>gi|313240640|emb|CBY32963.1| unnamed protein product [Oikopleura dioica]
Length = 216
Score = 76.8 bits (187), Expect = 3e-12, Method: Composition-based stats.
Identities = 32/152 (21%), Positives = 60/152 (39%), Gaps = 7/152 (4%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRN---TKHG 57
R GR+ + R+I V +A+GS +++ G+T +L + +
Sbjct: 9 FRFDGRRAAEFRKIQGRLGVFDHADGSAILQQGNTKVLAAVFGPRQPMASQHGAVSQEKC 68
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
+ EY ++ R + R ++QEI + + + + + I I +
Sbjct: 69 IVDVEYSRAAFASAERKR----RARGDKKAQEISLSLKKTFEATILTTLYPRSAISIFVE 124
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSN 149
V+QADGG + A +AL D + D
Sbjct: 125 VLQADGGDYAVCVNAATLALIDAGIPIRDVCC 156
>gi|313226557|emb|CBY21703.1| unnamed protein product [Oikopleura dioica]
Length = 216
Score = 76.8 bits (187), Expect = 3e-12, Method: Composition-based stats.
Identities = 32/152 (21%), Positives = 60/152 (39%), Gaps = 7/152 (4%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRN---TKHG 57
R GR+ + R+I V +A+GS +++ G+T +L + +
Sbjct: 9 FRFDGRRAAEFRKIQGRLGVFDHADGSAILQQGNTKVLAAVFGPRQPMASQHGAVSQEKC 68
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
+ EY ++ R + R ++QEI + + + + + I I +
Sbjct: 69 IVDVEYSRAAFASAERKR----RARGDKKAQEISLSLKKTFEATILTTLYPRSAISIFVE 124
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSN 149
V+QADGG + A +AL D + D
Sbjct: 125 VLQADGGDYAVCVNAATLALIDAGIPIRDVCC 156
>gi|297819162|ref|XP_002877464.1| hypothetical protein ARALYDRAFT_485002 [Arabidopsis lyrata subsp.
lyrata]
gi|297323302|gb|EFH53723.1| hypothetical protein ARALYDRAFT_485002 [Arabidopsis lyrata subsp.
lyrata]
Length = 242
Score = 76.4 bits (186), Expect = 3e-12, Method: Composition-based stats.
Identities = 39/241 (16%), Positives = 72/241 (29%), Gaps = 22/241 (9%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R GR NQ+R ++ +R + GS GDT +L + N +
Sbjct: 5 REDGRTPNQLRPLACSRNILHRPHGSASWSQGDTKVLAAVYGPKAGTKKNENAEKACFEV 64
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
+ +G+ G +E + ++ R ++S+ L+ + + V+
Sbjct: 65 I-------------WKPKTGQIGKVEKEYEMIMKRTIQSICVLTVNPNTTTSVIIQVVHD 111
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
DG AI A AL D M+ + + +
Sbjct: 112 DGSLLPCAINAACAALVDAGIPMK---HLAVAICCCLADNGYLVLDPNKLEEKKMTAFAY 168
Query: 182 DSTIDVDANF----VMTDSGHIVE--VQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
+ + G VE + S S D +F + + A L +
Sbjct: 169 LVFPNTTLSVLPEGSSVAEGEPVEHGIITSVTHGVMSVDDYFLCVENGRAATASLSAFFR 228
Query: 236 D 236
Sbjct: 229 K 229
>gi|195170324|ref|XP_002025963.1| GL10119 [Drosophila persimilis]
gi|194110827|gb|EDW32870.1| GL10119 [Drosophila persimilis]
Length = 296
Score = 76.4 bits (186), Expect = 3e-12, Method: Composition-based stats.
Identities = 40/261 (15%), Positives = 66/261 (25%), Gaps = 22/261 (8%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
R GR R + L + A GS ++ +T +L E VP + + G +
Sbjct: 22 FRCDGRSRRDYRPMELETGLVSNASGSARLRLANTDILVGIKTEIDVPDPL-TPEFGKLE 80
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQII---IDCD 117
+T R Q L + +Q ID
Sbjct: 81 FFVDCSANATPEFEGRGGSDLAQELVLALENAYESPLAFDYRTLCLIPGQQCWKLYIDIL 140
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCS-------NKFQLSQVLKG--------HVA 162
+++ G A A ALH+ S + +
Sbjct: 141 ILECGGNLHDAVSLAAKAALHNTKLPRVTASLLDAGVTDLIISDNPYDCTRLTIDTVPLL 200
Query: 163 AISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGH--IVEVQGSAERATFSQDHFFAML 220
C + + E + V +G + + +D L
Sbjct: 201 VTVCKIGDYCLVDPSAEEEACSTVSIVVSVSMRNGEAFLSGSHMTG-GGAMHRDTMRNCL 259
Query: 221 NLAKDRIADLIKLQKDVISNE 241
NL L L V+ E
Sbjct: 260 NLGLSIGEQLNTLLAKVLKQE 280
>gi|154346012|ref|XP_001568943.1| exosome complex exonuclease RRP41 [Leishmania braziliensis
MHOM/BR/75/M2904]
gi|134066285|emb|CAM44076.1| putative exosome complex exonuclease rrp41 [Leishmania braziliensis
MHOM/BR/75/M2904]
Length = 246
Score = 76.4 bits (186), Expect = 3e-12, Method: Composition-based stats.
Identities = 37/242 (15%), Positives = 81/242 (33%), Gaps = 18/242 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+RL GR+ + R + + +GSC + G + + + + +
Sbjct: 13 LRLDGRRPLEARRMDIVFGTLSACDGSCDITVGQSKVCASIFGPRESLHKQEAKHDKVLV 72
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
+ G + + + R++ + LS + QI I +V+Q
Sbjct: 73 TCEVAVAAFAGESRRNPQRRSKLSEDIDAAVVQVARSV---ILLSQYPNSQIHIYIEVLQ 129
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
DG + A I A +AL D M D + + + + ++ L V +
Sbjct: 130 QDGNEKVACINAACLALVDANVAMRDVVCCISVGLLDEHMLIDLANDELRSQCPVIVA-- 187
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK-LQKDVIS 239
F D+ +I+ ++ ++ D +L A+ +L + + +
Sbjct: 188 ---------AFTGHDTQNIIWLETTSR---LPPDSVARLLKCAEQGAQELFETTIRKSLE 235
Query: 240 NE 241
Sbjct: 236 EH 237
>gi|255550900|ref|XP_002516498.1| Exosome complex exonuclease RRP46, putative [Ricinus communis]
gi|223544318|gb|EEF45839.1| Exosome complex exonuclease RRP46, putative [Ricinus communis]
Length = 211
Score = 76.4 bits (186), Expect = 3e-12, Method: Composition-based stats.
Identities = 36/154 (23%), Positives = 58/154 (37%), Gaps = 13/154 (8%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R GR NQ+R ++ +R V A GS GDT +L + P +N
Sbjct: 5 RDDGRTPNQLRPLACSRNVLNRAHGSASWCQGDTKVLAAVYGPK--PGTKKNENPEKACI 62
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
E P +G+ G +E + ++ R L+++ L+ + + V+
Sbjct: 63 EVIWKP-----------KTGQIGKVEKEYEMILKRTLQTICVLTINPNTTTSVIVQVVHD 111
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQ 155
DG T AI A AL D M+ +
Sbjct: 112 DGALLTCAINAACAALVDAGIPMKHLAVAICCCL 145
>gi|326493068|dbj|BAJ84995.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 337
Score = 76.4 bits (186), Expect = 3e-12, Method: Composition-based stats.
Identities = 43/258 (16%), Positives = 86/258 (33%), Gaps = 33/258 (12%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+R+ GR+ R++ + +GS V+ G+T ++ T + V + G +
Sbjct: 24 LRVDGRRPFDFRKLKIAFG---REDGSAEVELGETRVMGYVTAQL-VQPYKDRPNEGTLA 79
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSA--------LGSRQI 112
P + GR G + E+ R+I R LR + +
Sbjct: 80 IFTEFSPMADPAFEP-----GRPGEAAIELGRVIDRGLRESRAVDMESLCVVAGKHVWSV 134
Query: 113 IIDCDVIQADGGTRTAAITGAWVALHDCLQHM-------------EDCSNKFQLSQVLKG 159
+D ++ +G AA A AL + D + L +
Sbjct: 135 RVDLHILDNEGNLIDAANIAALAALSTFRRPECTVGGDDGQQVTVHDSEVRDPLPLTIHH 194
Query: 160 HVAAISCGML--CGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFF 217
A++ ++D Y E++ + + +G + +Q + S
Sbjct: 195 LPIAVTFAYFGDGNIMVIDPTYKEEAVMGGRMTATINSNGDVCAIQKAGGEGVMS-SVIM 253
Query: 218 AMLNLAKDRIADLIKLQK 235
L +A ++AD+ K
Sbjct: 254 QCLRIASVKVADIPSKIK 271
>gi|281202081|gb|EFA76286.1| hypothetical protein PPL_10049 [Polysphondylium pallidum PN500]
Length = 1016
Score = 76.4 bits (186), Expect = 3e-12, Method: Composition-based stats.
Identities = 35/241 (14%), Positives = 72/241 (29%), Gaps = 19/241 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+R GR R L +A GS + +TH+L + P + G +
Sbjct: 775 VRSDGRSRLDYRHFELDVGEIAHACGSARILLSNTHVLVGIKADIGAPTTDKP-NSGVLN 833
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQI--IIDCDV 118
P ++ + A +++++RM+ +L + G ID V
Sbjct: 834 YSVECCPSASPEFEGKGAEQL-NIELAKQLERMLENSLDLESLVIVPGRYCWNLHIDATV 892
Query: 119 IQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGH--------------VAAI 164
+ +DG A AL + + +
Sbjct: 893 LDSDGNLFDALSIVTRAALFNTRLPTIKVVQGEHEQIEFEVSEDSDTYQSLSIENVPICV 952
Query: 165 SCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAK 224
+ + ++D E+ ++ + +I +Q + M+N+AK
Sbjct: 953 TLTKVGTQFLIDSTLEEELCMEARLTIGINKKSNICSIQKGG-MNGLDANTVNQMINVAK 1011
Query: 225 D 225
Sbjct: 1012 Q 1012
>gi|158300785|ref|XP_552338.3| AGAP011906-PA [Anopheles gambiae str. PEST]
gi|157013328|gb|EAL38841.3| AGAP011906-PA [Anopheles gambiae str. PEST]
Length = 308
Score = 76.0 bits (185), Expect = 4e-12, Method: Composition-based stats.
Identities = 37/241 (15%), Positives = 80/241 (33%), Gaps = 12/241 (4%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R GR+ + R+ V A+GS V+ G+T ++ + ++P + + G +
Sbjct: 43 RKDGRRLQESRKYYAKIGVVSTAKGSAYVELGNTKVIVSVFDPREIPKQNKFCELGELFC 102
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
+ P + R + + + + AL V + QI + +V++
Sbjct: 103 DLKFSPFAPAVRKTHQTDARERSMTAALTS-----ALNPSVCRHLFPNLQIDVFANVLED 157
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
DG AIT A +AL D M D + + + L
Sbjct: 158 DGSALAVAITAAGLALGDACVPMFDIVTAATAGVLGDR----VVMDPTAEEEALCLAGHT 213
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
+ + + + E+ + + DL+ + + ++ ++
Sbjct: 214 EENHGLVMLAKLPTLDQVPEIWQYG---FVDVELLWDTCKQLNAACGDLVPVVQHLLVSK 270
Query: 242 V 242
V
Sbjct: 271 V 271
>gi|46135695|ref|XP_389539.1| hypothetical protein FG09363.1 [Gibberella zeae PH-1]
Length = 238
Score = 76.0 bits (185), Expect = 4e-12, Method: Composition-based stats.
Identities = 37/147 (25%), Positives = 56/147 (38%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+R+ GR+ N++R + R A+GS ++ G T ++ T + + G
Sbjct: 13 LRVDGRRWNELRRLHAQIRTQDAADGSSYLEMGHTKVMCVVTGPSEQQQRRGGQQAGRDM 72
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
A + G GR R QEI+ I AL S + + I I V+
Sbjct: 73 AAINVNVVVAGFSSVDRKKRGRNDKRIQEIETTIANALSSNLHTHLFPNSSISISLHVLS 132
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDC 147
DG A I +AL D M D
Sbjct: 133 QDGSLLAALINATTLALIDAGIPMSDY 159
>gi|124487127|ref|NP_001074657.1| exosome complex exonuclease RRP42 [Mus musculus]
gi|66267444|gb|AAH94932.1| Exosome component 7 [Mus musculus]
gi|124376042|gb|AAI32364.1| Exosome component 7 [Mus musculus]
gi|148677125|gb|EDL09072.1| mCG23310, isoform CRA_b [Mus musculus]
gi|148877509|gb|AAI45676.1| Exosome component 7 [Mus musculus]
Length = 291
Score = 76.0 bits (185), Expect = 4e-12, Method: Composition-based stats.
Identities = 35/258 (13%), Positives = 74/258 (28%), Gaps = 19/258 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+R+ GR R + + V GS VK G T +L E P + G++
Sbjct: 22 LRVDGRGCEDYRCVEVETDVVSNTSGSARVKLGHTDILVGVKAEMGTPK-LEKPNEGYLE 80
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRA---LRSVVDLSALGSRQIIIDCD 117
+T R + + ++ LRS+ + +D
Sbjct: 81 FFVDCSANATPEFEGRGGDDLGTEIANTLYRIFNNKSSVDLRSLCISPREHCWVLYVDVL 140
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMED-------CSNKFQLSQVLKGH-------VAA 163
+++ G A AL + +
Sbjct: 141 LLECGGNLFDAISIAVKAALFNTRIPRVRVLEDEEGAKDIELSDDPYDCIRLSVENVPCI 200
Query: 164 ISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLA 223
++ + +VD E++ +T G + ++ + + + F M+ +
Sbjct: 201 VTLCKIGCRHVVDATLQEEACSLASLLVSVTSKGVVTCMRKVGK-GSLDPESIFEMMESS 259
Query: 224 KDRIADLIKLQKDVISNE 241
K L + ++ E
Sbjct: 260 KRVGKVLHVSLQSLLHKE 277
>gi|159481271|ref|XP_001698705.1| polyribonucleotide phosphorylase PNPase [Chlamydomonas reinhardtii]
gi|158273599|gb|EDO99387.1| polyribonucleotide phosphorylase PNPase [Chlamydomonas reinhardtii]
Length = 599
Score = 76.0 bits (185), Expect = 4e-12, Method: Composition-based stats.
Identities = 34/231 (14%), Positives = 65/231 (28%), Gaps = 19/231 (8%)
Query: 13 EISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG 71
EI L + + A G+ + G+T L TA + +
Sbjct: 96 EIKLETGEIGRQANGAIMATAGETMLYATACCS--ASPTGDGSFTPLTVNYAERFSAAGR 153
Query: 72 NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAIT 131
GR + R++ R +R + QI+ AIT
Sbjct: 154 TSGGFVKRDGRPRDAEVLVSRLVDRPIRPMFAKGWANDTQILEWVLSYDGVNDPEPLAIT 213
Query: 132 GAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANF 191
A AL ++ ++ G I++ E T +D
Sbjct: 214 AAAAALLISDIPLKKAVAGVRVGMSAD------------GGFIINPTVEEMETSRLDLMV 261
Query: 192 VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNEV 242
T ++ ++ +++ L + IA L + + +V
Sbjct: 262 AGTRD-AVLMIE--GFCDFLTEEQMIEALGKGSEAIASLCDQM-EAWAKKV 308
>gi|156389595|ref|XP_001635076.1| predicted protein [Nematostella vectensis]
gi|156222166|gb|EDO43013.1| predicted protein [Nematostella vectensis]
Length = 232
Score = 76.0 bits (185), Expect = 4e-12, Method: Composition-based stats.
Identities = 29/233 (12%), Positives = 73/233 (31%), Gaps = 27/233 (11%)
Query: 10 QMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRS 69
++R + + A+GS GDT ++ A +V + + +
Sbjct: 14 ELRAMFCEHGLLDKADGSSKFAQGDTQVMAAAYGPVEVKLNKELIDRATLEVIFRPKIGI 73
Query: 70 TGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAA 129
G + ++ +I + +V + + I V+Q G + A
Sbjct: 74 -------------PGCSEKLVEGIIRNSCEPIVLTALHPRASLTIVVQVVQNSGSLLSCA 120
Query: 130 ITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDA 189
+ A +A+ D M + + + +D ++
Sbjct: 121 VNAACLAMMDAGFPMRCMMCGITCAITEQDELV------------LDPTLEQERKATAVL 168
Query: 190 NFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNEV 242
FV + S+ + +F D + L +K + +++ + + ++
Sbjct: 169 TFVFDSVNQNLL--TSSTKGSFDVDQYNKCLAASKAAMGNILAFYRQSVERKL 219
>gi|291229746|ref|XP_002734834.1| PREDICTED: exosome component 9-like [Saccoglossus kowalevskii]
Length = 421
Score = 76.0 bits (185), Expect = 4e-12, Method: Composition-based stats.
Identities = 48/254 (18%), Positives = 83/254 (32%), Gaps = 18/254 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R+ GRQ R ++ G C V+ GDT +L + E P R T+ G
Sbjct: 53 RVDGRQAYDFRNAKISFG---QDLGHCEVQLGDTRVLCQVSCEIIEPRQNRPTEGGLYFN 109
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGS--RQIIIDCDVI 119
S R++ G + R E RA+ + G +I ID V+
Sbjct: 110 VELSPMASPLFEPGRQSEFGIEIIRFLEKTVRDSRAIDTESLCIVAGEKVWEIRIDIHVL 169
Query: 120 QADGGTRTAAITGAWVALHDCLQHM----------EDCSNKFQLSQVLKGHVAAISCGML 169
DG A AL + +++ +S + +++
Sbjct: 170 NHDGNIMDCVTMAAVTALSHFRRPDVSVVGEDVQVHSAADRDPVSLSVHHLPVSVTFAYF 229
Query: 170 CG--YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRI 227
Y +VD E+ +D M + S + +D A ++
Sbjct: 230 DEGKYLLVDPTEREECVMDGSMILSMNIHRELCTAHMSGDML-LVKDQIIRCTQTAIVKV 288
Query: 228 ADLIKLQKDVISNE 241
++L L K + N+
Sbjct: 289 SELTDLIKKALEND 302
>gi|325185608|emb|CCA20090.1| exosome complex exonuclease MTR3like protein putativ [Albugo
laibachii Nc14]
Length = 251
Score = 76.0 bits (185), Expect = 4e-12, Method: Composition-based stats.
Identities = 39/247 (15%), Positives = 74/247 (29%), Gaps = 25/247 (10%)
Query: 1 MRLSG-RQ-ENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIR-NTKHG 57
+R R +Q+R + V A GS V+ T ++ P R + G
Sbjct: 21 LRADQTRSSMDQIRATYMQVGVIHNASGSAYVELQGTKVICAVYGPRNNPRGRRKFHEGG 80
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
+ + P R + + +++ +AL + L L +
Sbjct: 81 QLICDVKFAP--FAERNRTRNAGQDPDEID--LSQIVTKALLPAIFLDKLPKCVVSCFVV 136
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
++Q+DG AI A +AL D M D V +
Sbjct: 137 ILQSDGSELATAIMCASLALADAAIEMRDLVTACNAGIVDD-----------KLLVDLCT 185
Query: 178 DYGEDSTIDVDANF-VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL-QK 235
S + F V QG+ + M+++ + ++ K
Sbjct: 186 SEERMSQGNTMLAFLPSLQKSTFVMQQGT-----MTHAQVEEMIDVCSIACSSVLNESMK 240
Query: 236 DVISNEV 242
++ +V
Sbjct: 241 VALTQKV 247
>gi|290992775|ref|XP_002679009.1| predicted protein [Naegleria gruberi]
gi|284092624|gb|EFC46265.1| predicted protein [Naegleria gruberi]
Length = 280
Score = 76.0 bits (185), Expect = 4e-12, Method: Composition-based stats.
Identities = 42/267 (15%), Positives = 83/267 (31%), Gaps = 41/267 (15%)
Query: 1 MRLSGRQE-NQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWI 59
+R R+ NQ+R++ + V A+GS G+T ++ + E +
Sbjct: 6 LRRDQRKTSNQLRDMQVELGVLGKADGSVKFSQGNTTVICSVCGPESSMKEKGD----QA 61
Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119
+ PR + +E + +I + L +V+ + I I V+
Sbjct: 62 IIDVMFQPRD-----------KKASEEEKEYELIIRQTLENVILTNIYPRTVITISIQVV 110
Query: 120 QADGGTRTAAITGAWVALHDCLQHME--------DCSNKFQLSQVLKGHVAAISCGMLCG 171
Q DG +A++ A +AL D M+ N S +
Sbjct: 111 QYDGCLLSASLNAASLALLDAGVAMKTTLVSSSCSYLNSGDCLLDPTRIEQDFSSILHND 170
Query: 172 YPIVDLDYGEDSTIDVDANFVM-----------------TDSGHIVEVQGSAERATFSQD 214
+ Y + S+ TDS + S + +
Sbjct: 171 DSSSYIQYYKTSSKGPKVIVPKGFAFFVFDSAPLRNPSKTDSDDDSFLVTSITEGLLTDE 230
Query: 215 HFFAMLNLAKDRIADLIKLQKDVISNE 241
++LAK+ + L + + +
Sbjct: 231 ALRECISLAKEGALSVYSLIRLTLERK 257
>gi|321458150|gb|EFX69223.1| hypothetical protein DAPPUDRAFT_301019 [Daphnia pulex]
Length = 276
Score = 76.0 bits (185), Expect = 5e-12, Method: Composition-based stats.
Identities = 32/253 (12%), Positives = 72/253 (28%), Gaps = 14/253 (5%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R GR+ + R+++L A+GS +VK G+T ++ E P + G+I
Sbjct: 23 RPDGRKLLEFRKMTLNAGSIGTADGSAIVKCGNTTVICGIKAELAAPEREEPS-KGFIIP 81
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQ---EIQRMIGRALRSVVDLSALGSRQIIIDCDV 118
+ + Q + I L ++ + + + D
Sbjct: 82 NVTLPSLCSSQIKSGPPGETAQAATQFIAELVNNNIIMDLETLCIKVSKWAWVLHCDLLC 141
Query: 119 IQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLD 178
I DG A + AL + + + L
Sbjct: 142 INLDGSLLDACVMALVAALKNLKLPIVSYDEEMDKLISNPDEKMGFDTIKQPVTSTFSLF 201
Query: 179 YGEDSTIDVDANFVMTDSGHIVEVQGSAE---------RATFSQDHFFAMLNLAKDRIAD 229
D +G + + T + ++ ++ + +
Sbjct: 202 DNGILISDPTFEEEQLAAG-LTSITMEGTSVTHMYKPGGCTLDEKQVKKLIQQSELKTKE 260
Query: 230 LIKLQKDVISNEV 242
+ +L ++ S+ +
Sbjct: 261 VARLIEEACSSSI 273
>gi|241582682|ref|XP_002403552.1| polyribonucleotide nucleotidyltransferase, putative [Ixodes
scapularis]
gi|215502222|gb|EEC11716.1| polyribonucleotide nucleotidyltransferase, putative [Ixodes
scapularis]
Length = 723
Score = 76.0 bits (185), Expect = 5e-12, Method: Composition-based stats.
Identities = 27/217 (12%), Positives = 69/217 (31%), Gaps = 17/217 (7%)
Query: 20 VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGNRVKREAV 79
++K+A+GS + + GDT ++ T K + L + +
Sbjct: 8 LAKFADGSAVAQIGDTSVMVTVV--SKTKPASATFLPLLLRLLIMRLFGQSESVPHESQS 65
Query: 80 SGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVALHD 139
+Q ++ R+LR + Q++ + + ++ A A
Sbjct: 66 RLPGSSYAQHALDLLNRSLRPLFPAGYFYETQLMCNLLAVDGINDPDIVSLNAASAA--- 122
Query: 140 CLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHI 199
G V A+ G++ G +++ + + ++ + +
Sbjct: 123 ----------LSVSDVPWGGPVGAVRVGLIDGDVVINPTRRQMAQSSLNLIVTGAEHSQV 172
Query: 200 VEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
V ++ S + F + L +++ K+
Sbjct: 173 VMLEASGDNVLL--QDFQKAVRLGVKETQAIVRQIKE 207
Score = 73.7 bits (179), Expect = 2e-11, Method: Composition-based stats.
Identities = 30/189 (15%), Positives = 64/189 (33%), Gaps = 8/189 (4%)
Query: 52 RNTKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQ 111
R K Y P +T + R+ G + + +
Sbjct: 364 RGIKERNFMLHYEFPPYATNETGRSGPTGRRELGHGALAEHGLRPLVPRD------FPFT 417
Query: 112 IIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG 171
I + +V++++G + A++ G +AL D ++ + + V +
Sbjct: 418 IRLTSEVLESNGSSSMASVCGGSMALMDAGVPIQAPAAGVAVGLVSLPDP-DQPHQLKDY 476
Query: 172 YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231
+ DL ED D+D T G I +Q + + A + ++++
Sbjct: 477 RLLTDLLGIEDYLGDMDFKMAGTKKG-ITALQADIKLPGIPVKVVMEAIQQATEGKSEIL 535
Query: 232 KLQKDVISN 240
++ +VIS
Sbjct: 536 RIMNEVISK 544
>gi|213688370|ref|NP_001094195.1| exosome component 7 [Rattus norvegicus]
gi|149018124|gb|EDL76765.1| exosome component 7 [Rattus norvegicus]
Length = 291
Score = 75.7 bits (184), Expect = 5e-12, Method: Composition-based stats.
Identities = 34/248 (13%), Positives = 70/248 (28%), Gaps = 19/248 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+R+ GR R + + V GS VK G T +L E P + G++
Sbjct: 22 LRVDGRGCEDYRCVEVETDVVSNTSGSARVKLGHTDILVGVKAEMGTPK-LERPSEGYLE 80
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRA---LRSVVDLSALGSRQIIIDCD 117
+T R + + ++ LRS+ + +D
Sbjct: 81 FFVDCSANATPEFEGRGGDDLGTEIANTLYRIFNNKSSVDLRSLCISPREHCWVLYVDVL 140
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMED-------CSNKFQLSQVLKGH-------VAA 163
+++ G A AL + +
Sbjct: 141 LLECGGNLFDAISIAVKAALFNTRIPRVRVLEDEEGSKDIELSDDPYDCIRLSVENVPCI 200
Query: 164 ISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLA 223
++ + +VD E++ +T G + ++ + + + F M+ +
Sbjct: 201 VTLCKIGCRHVVDATLQEEACSLASLLVSVTSKGVVTCMRKVGK-GSLDPESIFEMMESS 259
Query: 224 KDRIADLI 231
K L
Sbjct: 260 KRVGKVLH 267
>gi|30962875|gb|AAH52656.1| Exosome component 7 [Mus musculus]
Length = 291
Score = 75.7 bits (184), Expect = 5e-12, Method: Composition-based stats.
Identities = 36/258 (13%), Positives = 74/258 (28%), Gaps = 19/258 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+R+ GR R + + V GS VK G T +L E P + G++
Sbjct: 22 LRVDGRGCEDYRCVEVETDVVSNTSGSARVKLGHTDILVGVKAEMGTPK-LEKPNEGYLE 80
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRA---LRSVVDLSALGSRQIIIDCD 117
+T R + + ++ LRS+ + +D
Sbjct: 81 FFVDCSANATPEFEGRGGDDLGTEIANTLYRIFNNKSSVDLRSLCISPREHCWVLYVDVL 140
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMED-------CSNKFQLSQVLKGH-------VAA 163
+++ G A AL D +
Sbjct: 141 LLECGGNLFDAISIAVKAALFDTRIPRVRVLEDEEGAKDIELSDDPYDCIRLSVENVPCI 200
Query: 164 ISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLA 223
++ + +VD E++ +T G + ++ + + + F M+ +
Sbjct: 201 VTLCKIGCRHVVDATLQEEACSLASLLVSVTSKGVVTCMRKVGK-GSLDPESIFEMMESS 259
Query: 224 KDRIADLIKLQKDVISNE 241
K L + ++ E
Sbjct: 260 KRVGKVLHVSLQSLLHKE 277
>gi|68171420|ref|ZP_00544811.1| Polyribonucleotide nucleotidyltransferase [Ehrlichia chaffeensis
str. Sapulpa]
gi|67999162|gb|EAM85821.1| Polyribonucleotide nucleotidyltransferase [Ehrlichia chaffeensis
str. Sapulpa]
Length = 242
Score = 75.7 bits (184), Expect = 5e-12, Method: Composition-based stats.
Identities = 33/227 (14%), Positives = 68/227 (29%), Gaps = 24/227 (10%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLE---EKVPMWIRNTKHGWITAEYGMLPRS 69
+ L +++ A G+ +V + T +L T E V + + G +P
Sbjct: 16 LVLESGKIARQASGAVMVSYAGTTVLATVVTGKTKEPVDFLPLTVQFVAKSYAVGKIPGG 75
Query: 70 TGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAA 129
R G+ R I R+I R++R + I+ + A
Sbjct: 76 FLKR------EGKPSDRETLISRLIDRSIRPLFPAGFYDEISIVCNLLSYDTVTPPEVTA 129
Query: 130 ITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDA 189
+ GA AL + + G +++ E +D
Sbjct: 130 LVGATAALSISGVPFNGLVVGAR-----------VGYLPSEGKYLLNASADEMLCSSLDL 178
Query: 190 NFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ++ V+ A + + + ++I L K+
Sbjct: 179 FLSGNED-SVLMVESEASELS--ESQMLGAITFGHQHCQEVINLIKE 222
>gi|257062723|gb|ACV40374.1| ribosomal RNA-processing protein 46 [Hordeum vulgare subsp.
vulgare]
Length = 240
Score = 75.7 bits (184), Expect = 6e-12, Method: Composition-based stats.
Identities = 38/244 (15%), Positives = 73/244 (29%), Gaps = 29/244 (11%)
Query: 7 QENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGML 66
+ NQ+R S TR + A GS GDT +L P + + E
Sbjct: 12 KANQLRAYSCTRNPLERAHGSARWAQGDTVVLAAVYGPR--PGTRKGENPEKASLEVVWK 69
Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
P +G+ G + +E + + R L+S+ L+ + I V+ DG
Sbjct: 70 P-----------KTGQIGRQEKEYEMTLKRTLQSICLLTVHPNTTTSIILQVMGDDGSLL 118
Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
AI + AL M+ + ++ + +
Sbjct: 119 PCAINASCAALVFAGIPMK---HLAVAIGCGVLPDGSVILDTSKAEEQQLKSFAHLVFPN 175
Query: 187 VDANFVM---------TDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
+ + ++ G I + S+D +F + A + +
Sbjct: 176 SSLSVDVKEPQQKDGQSERGLITSI----THGVMSEDDYFNCIERGLAASARISDFMRTT 231
Query: 238 ISNE 241
+
Sbjct: 232 LQKH 235
>gi|156845783|ref|XP_001645781.1| hypothetical protein Kpol_1010p39 [Vanderwaltozyma polyspora DSM
70294]
gi|156116449|gb|EDO17923.1| hypothetical protein Kpol_1010p39 [Vanderwaltozyma polyspora DSM
70294]
Length = 246
Score = 75.7 bits (184), Expect = 6e-12, Method: Composition-based stats.
Identities = 47/243 (19%), Positives = 91/243 (37%), Gaps = 21/243 (8%)
Query: 1 MRLSGRQENQMREISLTRRVSKYA-EGSCLVKFGDTHLLTTATLEEKVP-MWIRNTKHGW 58
+RL GR+ N++R + +A +GS ++ G+ ++T ++ +
Sbjct: 12 LRLDGRRWNELRRFECSINTHAHASDGSSYLEQGNNKIVTLVKGPQEPILRSQLDATKAS 71
Query: 59 ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDV 118
+ + S R K + R R E+Q + R V L I I+ V
Sbjct: 72 LNITVNITKFSKMERSKSSHKNER---RVLEMQTALVRTFEKNVMLHLYPRTLIDIEIHV 128
Query: 119 IQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLD 178
+Q DGG + I +AL D M D V+AIS G+ P++D++
Sbjct: 129 LQQDGGILGSLINSITLALIDSGIAMYDY-------------VSAISIGLYDTTPLLDVN 175
Query: 179 YGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
E++ + V+ S + + + D ++L + + +L + +
Sbjct: 176 TLEENAMSTVTLGVIGKSEKLSLL---SVEDKIPLDRLESVLAIGIAGAHRVRELMDNEL 232
Query: 239 SNE 241
Sbjct: 233 RKH 235
>gi|255022817|ref|ZP_05294803.1| ribonuclease PH [Listeria monocytogenes FSL J1-208]
Length = 119
Score = 75.7 bits (184), Expect = 6e-12, Method: Composition-based stats.
Identities = 38/113 (33%), Positives = 64/113 (56%), Gaps = 1/113 (0%)
Query: 130 ITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDA 189
+TGA++A+ + +++ F V A + G ++DL+Y EDS VD
Sbjct: 1 MTGAFIAMVMAIAKLDEAVP-FAKFPVKDFLAATSVGVLEEGGTVLDLNYVEDSAAQVDM 59
Query: 190 NFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNEV 242
N +MT SG VE+QG+ E ATFS+ ++ L K I++LI++QK+ + ++V
Sbjct: 60 NIIMTGSGAFVELQGTGEEATFSETELAELIALGKKGISELIEIQKETLGDKV 112
>gi|82752803|ref|XP_727434.1| hypothetical protein [Plasmodium yoelii yoelii str. 17XNL]
gi|23483275|gb|EAA18999.1| similar to S. cerevisiae RRP45, putative [Plasmodium yoelii yoelii]
Length = 391
Score = 75.7 bits (184), Expect = 6e-12, Method: Composition-based stats.
Identities = 27/255 (10%), Positives = 69/255 (27%), Gaps = 18/255 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+RL GR R +S+ G+ V G+T ++ T E P + +
Sbjct: 19 LRLDGRNFEDSRNVSI---YFLGDYGNVEVSIGNTKVVCKITSEIVKPYDKKPNEGIIKI 75
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
+ N + + + E L + + ++
Sbjct: 76 NLDVESFNTYNNDISKITDECLEIKNLIERIFKASNILNFESLCIIPYKKVWCLLINITV 135
Query: 121 ADGGTRTAAIT-------------GAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCG 167
+ + +++ + V +
Sbjct: 136 IENDGNLYDSCYLSAYSALLHFRNNNVNIDNTGNVIIDEEEVNYTSLSVHNSPILTTFAY 195
Query: 168 MLCGYPIV-DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226
+ D E+ + + + + +++ + S D + LAK R
Sbjct: 196 FNFEEICLIDPSLYEEEFMSSKLSIAINKNENLISILKPG-GLPISYDTILQGIELAKKR 254
Query: 227 IADLIKLQKDVISNE 241
+ ++K+ +D + +
Sbjct: 255 VKSILKILEDALKED 269
>gi|193664372|ref|XP_001942983.1| PREDICTED: exosome complex exonuclease RRP43-like [Acyrthosiphon
pisum]
Length = 267
Score = 75.7 bits (184), Expect = 6e-12, Method: Composition-based stats.
Identities = 37/247 (14%), Positives = 73/247 (29%), Gaps = 13/247 (5%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R GR+ R+ SL A+GS +VK G+T ++ E VP G++
Sbjct: 22 RNDGRELMNFRDASLNLNTIHTADGSAVVKIGNTAVVCGIKAELGVPKA-EAPDIGYLLV 80
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRA---LRSVVDLSALGSRQIIIDCDV 118
+ + S + L+ + + D
Sbjct: 81 NIELPSLCSKKIRPGIPCDEAMQMTSFLNEVCNNCKILDLQQLCISVDKLVWILSCDIYC 140
Query: 119 IQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGH--------VAAISCGMLC 170
+ DG A + AL + + + V++ + + + G+
Sbjct: 141 LNYDGSVLDACLIALLSALQTVKIPEVKYDKETEETTVIENYIPLKVNSLPVSSTFGVFN 200
Query: 171 GYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADL 230
I+ E+ + V V+T+ I + + A +R +
Sbjct: 201 EKYILADPTEEEEQLCVSKLTVVTNGSLIFSLHKPG-GEFIKDSQIQNCIKHANNRAKTI 259
Query: 231 IKLQKDV 237
+L K
Sbjct: 260 CQLIKAA 266
>gi|289740851|gb|ADD19173.1| exosomal 3'-5' exoribonuclease complex subunit Rrp45 [Glossina
morsitans morsitans]
Length = 404
Score = 75.3 bits (183), Expect = 6e-12, Method: Composition-based stats.
Identities = 41/254 (16%), Positives = 73/254 (28%), Gaps = 18/254 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
RL GR ++ R + + GS +V G+T +L + E P R +
Sbjct: 23 RLDGRNNDEFRSLRINYG---SDWGSVIVALGETKVLGQVSSELGEPKATRPNEGILHIN 79
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQII--IDCDVI 119
+ R Q R+ E RA+ R + +D +V+
Sbjct: 80 VELGPMAAAHFEAGRNCELTVQINRTLERTFKDSRAIDLESLCVISEERVWMLRVDLNVL 139
Query: 120 QADGGTRTAAITGAWVALHDCLQHMED----------CSNKFQLSQVLKGHVAAISCGML 169
+G AL + + K L V+ + +S +
Sbjct: 140 NHEGNLIDCCSVATLCALAHFRRPDVSVIEDEIRIHTSAEKEPLKMVMHHYPVCVSYVIF 199
Query: 170 C--GYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRI 227
+ D E+ D F + G + + T S A
Sbjct: 200 DGGRIAVADPTVAEERISDTQMIFGINSFGELCCLNLGGSSLT-SPTLLLQCSKKAAKHA 258
Query: 228 ADLIKLQKDVISNE 241
++K K + N+
Sbjct: 259 KSVVKQVKQSLEND 272
>gi|195351560|ref|XP_002042302.1| GM13365 [Drosophila sechellia]
gi|194124145|gb|EDW46188.1| GM13365 [Drosophila sechellia]
Length = 405
Score = 75.3 bits (183), Expect = 7e-12, Method: Composition-based stats.
Identities = 39/252 (15%), Positives = 75/252 (29%), Gaps = 18/252 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
RL GR+ N+ R++ LT GS V GDT ++ T E P R +
Sbjct: 29 RLDGRRSNESRDVELTFGTD---WGSVAVSMGDTKVMAQVTCEMGPPALSRPNEGKLHLN 85
Query: 62 EY--GMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119
G+ + + + L S+ + I ++ +VI
Sbjct: 86 VLLGGVAFLDEAYSTHDQRSLKLNSLLERTFRSSKSIDLESLCVAAEKHVWCIRVNVNVI 145
Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQ----------LSQVLKGHVAAISCGML 169
DG A+ AL + + + + + +++ +
Sbjct: 146 NHDGNLYDASSIATLAALMHFRRPDVSYKDGELCIFKQNEREFMPLLFHHYPVSVTYCVY 205
Query: 170 CG--YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRI 227
PI+D E++ D + + T + N A R
Sbjct: 206 KSSGQPILDPTLLEENAADSVIVLSFNSYQELCSLTAGGTAPTNAPTVMQCARNAA-ARC 264
Query: 228 ADLIKLQKDVIS 239
L+ + ++
Sbjct: 265 KSLLDFVRKALA 276
>gi|294655825|ref|XP_458018.2| DEHA2C07766p [Debaryomyces hansenii CBS767]
gi|199430635|emb|CAG86078.2| DEHA2C07766p [Debaryomyces hansenii]
Length = 235
Score = 75.3 bits (183), Expect = 7e-12, Method: Composition-based stats.
Identities = 31/229 (13%), Positives = 68/229 (29%), Gaps = 6/229 (2%)
Query: 15 SLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGNRV 74
+ V +GS + G T ++T+ T + + + + R
Sbjct: 4 EVNTSVLSRVDGSAELSVGTTKVITSVTGPIEPKIRQELPNLASLEIIVRPSLGVSTTRE 63
Query: 75 KREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAW 134
K R +S I+ R L +V + I + T T
Sbjct: 64 KALEDKLRSILQSIIIRYKYPRQLIQIVVQFLITENNINDNGSNQHNKDFTSTELNAAIN 123
Query: 135 VALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMT 194
+ N F + + P ++ +S + + +
Sbjct: 124 CCYFALIDANIALYNSFSSTSICI--PLDTKKENYIFNPNMNDLIVSESHHVICFSIKDS 181
Query: 195 DSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK-LQKDVISNEV 242
+ +++ ++ + FS+D + A D + Q+ I+N+V
Sbjct: 182 KAANLLLLESHGK---FSEDQLLLAIRKAGDECESIHNTYQRKCIANKV 227
>gi|302854926|ref|XP_002958966.1| hypothetical protein VOLCADRAFT_108396 [Volvox carteri f.
nagariensis]
gi|300255681|gb|EFJ39971.1| hypothetical protein VOLCADRAFT_108396 [Volvox carteri f.
nagariensis]
Length = 516
Score = 75.3 bits (183), Expect = 7e-12, Method: Composition-based stats.
Identities = 38/268 (14%), Positives = 74/268 (27%), Gaps = 42/268 (15%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
RL GR+ +R+ + S V G T +L+ T +VP + G +
Sbjct: 27 RLDGRRPYDLRKPKFQFSLDDR---SATVALGSTRVLSVVTASLEVP-FPDRPSEGPLRF 82
Query: 62 EYGMLPRSTGNRVKREAVSG--------------------------RQGGRSQEIQRMIG 95
P ++ R R E I
Sbjct: 83 NVEFSPMASPAFEPGRPGRQGEAWDPTQGLGLGLGRRRRFSELLRRRPSCRGCEDAIQIA 142
Query: 96 RALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQ 155
R + + S ++ + + + + + L
Sbjct: 143 RLIERGLRQSGAVDQEALCVVAGRKPEVEV---------GGESGTDILVHPPEVREPLPL 193
Query: 156 VLKGHVAAISCGMLCGYPIV--DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQ 213
+ A++ G+ G ++ D + E++ VM + V A+ +
Sbjct: 194 TIHHLPVAVTFGLFQGGDLLVVDPSWREEAAASGSCTVVMNPGREVCCVHK-ADGIGLTP 252
Query: 214 DHFFAMLNLAKDRIADLIKLQKDVISNE 241
D F + LA D+ L+ K +
Sbjct: 253 DQFMRCVRLAGDKAEQLVADLKAALEQH 280
>gi|195383888|ref|XP_002050657.1| GJ22278 [Drosophila virilis]
gi|194145454|gb|EDW61850.1| GJ22278 [Drosophila virilis]
Length = 296
Score = 75.3 bits (183), Expect = 7e-12, Method: Composition-based stats.
Identities = 36/261 (13%), Positives = 70/261 (26%), Gaps = 22/261 (8%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
R GR R + L + A GS ++ +T +L E VP + G +
Sbjct: 22 FRCDGRSRRDYRPMELETGLVSNASGSARLRLANTDILVGVKTEIDVPNPLTPQF-GKLE 80
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQII---IDCD 117
+T R Q L + +Q ID
Sbjct: 81 FFVDCSANATPEFEGRGGSDLAQELILSLQNAYESPFAFDYRTLCLIPGQQCWKLYIDIL 140
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMED-------CSNKFQLSQVLKGHVAA------- 163
+++ G A A AL++ ++
Sbjct: 141 ILECGGNLYDAVSLAAKAALYNTKLPRVTATLLDAGVTDLIISDNPYDCTRIGIDAVPLL 200
Query: 164 ISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGH---IVEVQGSAERATFSQDHFFAML 220
++ + Y +VD E+ V ++ + + + + +D +
Sbjct: 201 VTVCKIGDYCLVDPTAEEEVCSTVSMVVSVSMRDNEAYLSGTHMTG-GGSMHRDTMLNSI 259
Query: 221 NLAKDRIADLIKLQKDVISNE 241
L L L ++ +E
Sbjct: 260 QLGLSIGEQLNSLLVKMLKSE 280
>gi|270697519|ref|ZP_06222988.1| tRNA nucleotidyltransferase [Haemophilus influenzae HK1212]
gi|270315955|gb|EFA28017.1| tRNA nucleotidyltransferase [Haemophilus influenzae HK1212]
Length = 93
Score = 75.3 bits (183), Expect = 7e-12, Method: Composition-based stats.
Identities = 33/91 (36%), Positives = 52/91 (57%)
Query: 149 NKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAER 208
N + +KG V+AIS G++ G + DL+Y EDS + D N VM + G ++EVQG+AE
Sbjct: 2 NGTLKTNPIKGLVSAISVGIVDGQAVCDLEYVEDSAAETDMNVVMMEDGRMIEVQGTAEG 61
Query: 209 ATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
FS + +L+LAK + Q++ +
Sbjct: 62 EPFSHEELLTLLDLAKQGCNQIFIAQREALG 92
>gi|256066133|ref|XP_002570477.1| exonuclease [Schistosoma mansoni]
gi|227299135|emb|CAY17987.1| exosome complex exonuclease rrp42 (ribosomal rna processing protein
42), putative [Schistosoma mansoni]
Length = 254
Score = 75.3 bits (183), Expect = 8e-12, Method: Composition-based stats.
Identities = 36/248 (14%), Positives = 77/248 (31%), Gaps = 14/248 (5%)
Query: 4 SGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEY 63
GR ++ R + + + +A GS ++ G+T ++ +E P + NT G I
Sbjct: 2 DGRGPSEYRPLEIETNILSHATGSASIRIGETFIVCCVKMEVGKP-SLTNTSEGRIEINV 60
Query: 64 GMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGS--RQIIIDCDVIQA 121
P +T ++ A + ++ + + G I ID +++
Sbjct: 61 ECYPTATHRCNEKAASELEERLKTTLQSAYQLKFIDLSPLCIQRGRQCWVIYIDLLILEG 120
Query: 122 DGGTRTAAITGAWVALHDCL----------QHMEDCSNKFQLSQVLKGHVAAISCGMLCG 171
G A+ AL + Q+ + I+ +
Sbjct: 121 AGNLLDASSLVVKAALLNATQLNSLLLSVFQNNSESLEAGVQQFHGDMLPLFITVHKIGK 180
Query: 172 YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231
++D E++ + V+ G I ++ + + M LA L
Sbjct: 181 AYLIDASKEEEACSLSRLSLVIYPDGSIGSLEQDG-CCSCQLESIVEMSQLASIVGKKLN 239
Query: 232 KLQKDVIS 239
+
Sbjct: 240 HALVKTLE 247
>gi|15218985|ref|NP_176216.1| 3' exoribonuclease family domain 1-containing protein [Arabidopsis
thaliana]
gi|4249388|gb|AAD14485.1| Similar to gb|AF025438 Opa-interacting protein (OIP2) from Homo
sapiens [Arabidopsis thaliana]
gi|28416659|gb|AAO42860.1| At1g60080 [Arabidopsis thaliana]
gi|110735926|dbj|BAE99938.1| hypothetical protein [Arabidopsis thaliana]
gi|332195536|gb|AEE33657.1| 3' exoribonuclease domain 1-containing protein [Arabidopsis
thaliana]
Length = 302
Score = 74.9 bits (182), Expect = 9e-12, Method: Composition-based stats.
Identities = 45/268 (16%), Positives = 81/268 (30%), Gaps = 33/268 (12%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+R GRQ + R+ + + A+GS L K G T +L +E P + G I
Sbjct: 36 LRPDGRQLGKARDTIVNLGLVSTADGSALAKIGSTTMLAAIRMEVMTPST-DSPDEGCIA 94
Query: 61 AEYGMLPRSTGNRVKREAVSGRQ------------------GGRSQEIQRMIGRALRSVV 102
E+ M P + + +
Sbjct: 95 IEFHMPPICSPTVRPGRPAEAAPVISKRLSDTILSSGMIDLKELCLVSGKAAWMGYLDIY 154
Query: 103 DLSALGSRQIIIDCDVIQADGGTRTAAITGAWV----------ALHDCLQHMEDCSNKFQ 152
L A G+ + A + + + L ++ NK +
Sbjct: 155 CLDADGALFDAALLAAVAAFSNLQIPIVALNDNGRIVAVTGEKDQDNALITEKEAVNKEK 214
Query: 153 LSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFS 212
LK +++C + Y + D E+S +D V+ S +V S A
Sbjct: 215 RKLTLKNIPFSLTCILHKNYILADPTTEEESIMDTLVTVVLDSSDQMVSFYKSGGAALAY 274
Query: 213 QDHFFAMLNLAKDRIADLIKLQKDVISN 240
+ + LA+ R +L K ++
Sbjct: 275 SSAIKSCVELARKRAKEL----KQILGE 298
>gi|156542409|ref|XP_001601196.1| PREDICTED: similar to ENSANGP00000023686 [Nasonia vitripennis]
Length = 291
Score = 74.9 bits (182), Expect = 9e-12, Method: Composition-based stats.
Identities = 33/259 (12%), Positives = 70/259 (27%), Gaps = 21/259 (8%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
R GR R + L ++ GS ++ G+T +L +E P + + G I
Sbjct: 22 FRNDGRSRTDYRCMELETKLMDQVHGSARLRIGNTDILVGVKVEIDTP-YPDSPNEGKIE 80
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEI-QRMIGRALRSVVDLSALGSRQIIIDCD-- 117
+T + + + A+ + + D
Sbjct: 81 FFVDCSANATPSFEGKGGEDLANEISNVLALAYQSPHAMNLSQLSILPHKKCWKLYVDIL 140
Query: 118 ---------------VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVA 162
V A T + GA + + + D + + V
Sbjct: 141 ILECGGNLFDAVAVAVKAALYSTEIPKVKGAMLDGGEADIVLSDDIYESEKLDTTNCPVL 200
Query: 163 AISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNL 222
++ + +VD E+ + + +G I + + +L +
Sbjct: 201 -VTLCKIGDNCVVDPSSEEEMCSSANIVVSVMPNGRISSIVKMGY-GSLQPATLSKILKM 258
Query: 223 AKDRIADLIKLQKDVISNE 241
DL + +E
Sbjct: 259 GTSVGIDLNNGILSALKSE 277
>gi|147770895|emb|CAN74168.1| hypothetical protein VITISV_005208 [Vitis vinifera]
Length = 305
Score = 74.9 bits (182), Expect = 9e-12, Method: Composition-based stats.
Identities = 34/245 (13%), Positives = 70/245 (28%), Gaps = 22/245 (8%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+R GR+ R ++ V A GS V+ G T ++ + E P + K
Sbjct: 20 LRTDGRRRLTYRPFNVETGVIPQANGSARVRLGGTDVIASVKAELGKPSPSQPDKGKGRG 79
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
E S + G + + ++G + + G + D +
Sbjct: 80 GEELSTELSGALQHCLLGGKSGAVGDMEVLTNVLGAGIDLSSLVVVEGKVCWDLYIDGLV 139
Query: 121 ADGG--TRTAAITGAWVALHDCLQHMEDCSNKF-------------------QLSQVLKG 159
A AL + + + +
Sbjct: 140 VSSDGNLLDALGAAIKAALTNTGIPKVEVAVGASGDGLPEVDISDDEYLQFDTSGVPVIV 199
Query: 160 HVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAM 219
+ ++ + + IVD E+S + + ++ G I + A M
Sbjct: 200 TLTKVAQYHVGRHYIVDATLEEESQMSSAVSVSVSGQGRICGLIKRG-GAGLDPSVILDM 258
Query: 220 LNLAK 224
+++AK
Sbjct: 259 ISVAK 263
>gi|83283987|gb|ABC01901.1| 3'-5'-exoribonuclease/RNA binding-like protein [Solanum tuberosum]
Length = 303
Score = 74.9 bits (182), Expect = 9e-12, Method: Composition-based stats.
Identities = 46/265 (17%), Positives = 85/265 (32%), Gaps = 26/265 (9%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+R R+ R+ +L AEGS L K G T +L +E P G I
Sbjct: 36 VRPDARKLGSARDTTLALGAVASAEGSALAKIGSTTMLAAIKMEIMTPTVECP-DEGSIA 94
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGS---RQIIIDCD 117
E+ M P + Q ++ + + +L +G +D
Sbjct: 95 IEFHMPPICSPLVRPGRPAEVASVISKQLSDTILSSGMIDLKELCLVGGKAAWMAYLDIY 154
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKG------------------ 159
+ ADG AA+ A + + ++ V +
Sbjct: 155 CLDADGSLFDAALLSTVAAFSHLNIPVVSLNEDGRIVLVSEDNIQLKLEKQPVNTEKRKL 214
Query: 160 ----HVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDH 215
+++C + Y + D E+S ++ V+ S +V +
Sbjct: 215 KLNSPPFSLTCLLHKNYILADPTAEEESIMETAVTVVLDSSYQLVSLYKPGGPVHAHTSV 274
Query: 216 FFAMLNLAKDRIADLIKLQKDVISN 240
+ LAK R+ +L + + IS+
Sbjct: 275 IQDCVALAKRRVKELQSVLNEAISD 299
>gi|156551918|ref|XP_001607202.1| PREDICTED: similar to SCL75 protein [Nasonia vitripennis]
Length = 412
Score = 74.9 bits (182), Expect = 1e-11, Method: Composition-based stats.
Identities = 43/261 (16%), Positives = 83/261 (31%), Gaps = 29/261 (11%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R+ GR + R + + + G C+V G T + + + P R G +
Sbjct: 23 RIDGRTLLEPRPLKINFGTN---WGCCVVSLGQTRAAAQVSCDIQQPKASRP-NEGMLHV 78
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLS--------ALGSRQII 113
+ P + + SGRQ + I R + ++L+ + I
Sbjct: 79 NVELNPLAAQHF-----ESGRQSEAAALINRQLEKSLKESRCVDLESLCIVADKKVWNIR 133
Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQV-----------LKGHVA 162
+D +I DG A A AL + + + + V
Sbjct: 134 VDVSIINHDGNLIDCASIAALAALMHFHRPDVTSTGEEVIIHPFTEKDPLPLTLYHHPVC 193
Query: 163 AISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGS-AERATFSQDHFFAMLN 221
G +VD Y E+ + + + E + D ++ N
Sbjct: 194 ISFITFENGKTVVDPSYLEERVGAAILTLGINAYREVCSLYFDYIEYTSLVADVIPSVSN 253
Query: 222 LAKDRIADLIKLQKDVISNEV 242
A + +LI+ K+++ +V
Sbjct: 254 FAANYAYELIREIKELVKQDV 274
>gi|66809981|ref|XP_638714.1| hypothetical protein DDB_G0284053 [Dictyostelium discoideum AX4]
gi|60467336|gb|EAL65367.1| hypothetical protein DDB_G0284053 [Dictyostelium discoideum AX4]
Length = 237
Score = 74.9 bits (182), Expect = 1e-11, Method: Composition-based stats.
Identities = 42/242 (17%), Positives = 76/242 (31%), Gaps = 28/242 (11%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRN-TKHGWIT 60
R GR EN +R + + A+GS + +L +V + ++
Sbjct: 7 RNDGRCENSIRPVESEQGSLNKADGSAKFSQDKSKVLAAVYGPIEVNSARKEKILKSYVE 66
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
+ +T +E + +I A+ S++ + QI + V
Sbjct: 67 VTFTPAFGNTNY-------------IDKEKELLIKNAVESMILTTLYPRTQISVILQVFS 113
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
DG + AI A +AL D M L G + Y
Sbjct: 114 DDGSIVSCAINAACLALLDAGIEMNGLLGSVTLCFNNDGSIYVDPSTEEENQSKAIAIYS 173
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
+ + +IV S T ++D +F L+ A + +I K + N
Sbjct: 174 -----------FSSINKNIVL---SKTIGTLTEDQYFKGLDKASESCDLIISFIKLAVKN 219
Query: 241 EV 242
+
Sbjct: 220 RI 221
>gi|193645775|ref|XP_001952675.1| PREDICTED: exosome complex exonuclease RRP42-like [Acyrthosiphon
pisum]
Length = 289
Score = 74.5 bits (181), Expect = 1e-11, Method: Composition-based stats.
Identities = 30/257 (11%), Positives = 66/257 (25%), Gaps = 17/257 (6%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
R GR R + L + A GS ++ ++ +L +E P+
Sbjct: 22 FRCDGRSRQDYRPLELEMDIVSNANGSARLRLANSDILVCVKVEIDTPLPEAPKDGKIEY 81
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
+ + + R + L + + ++ +D +++
Sbjct: 82 FVDCSANATPAFEGRGGEHLAAELSRFLCLAHGPVFNLSKLCIVPGQSCWKLFVDVLILE 141
Query: 121 ADGGTRTAAITGAWVALHDCLQH--------------MEDCSNKFQLSQVLKGHVAAISC 166
G A A AL + +S
Sbjct: 142 CGGNLFDAVSLAAKAALCNTSLPNIVGTYEDGQNIDLQISDDPFDTKPLEASDLPVLVSL 201
Query: 167 GMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLA-KD 225
+ + D E+ +T G++ V +F D ++
Sbjct: 202 CKIGNSYVADPTIEEEICGAGCIVVSVTPKGNVTAVLKKG-AGSFMPDTLNEIIMSGSHI 260
Query: 226 RIADLIKLQKDVISNEV 242
I L K + + ++
Sbjct: 261 GIL-LNKALNETLIQDM 276
>gi|73993249|ref|XP_857305.1| PREDICTED: similar to Exosome complex exonuclease RRP43 (Ribosomal
RNA processing protein 43) (Exosome component 8) (p9)
(Opa-interacting protein 2) isoform 3 [Canis familiaris]
Length = 210
Score = 74.5 bits (181), Expect = 1e-11, Method: Composition-based stats.
Identities = 30/187 (16%), Positives = 54/187 (28%), Gaps = 13/187 (6%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R GR+ + R ++ A+GS LVK G+T ++ E P G++
Sbjct: 23 RPDGRELGEFRTTTVNIGSISTADGSALVKLGNTTVICGIKAEFAAPPT-DAPDKGYVVP 81
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGS---RQIIIDCDV 118
+ P + Q + + DL + D
Sbjct: 82 NVDLPPLCSSRFRSGPPGEEAQVASQFIADVIENSQIIQKEDLCISPGKLSWVLYCDIIC 141
Query: 119 IQADGGTRTAAITGAWVALHDCLQHME---------DCSNKFQLSQVLKGHVAAISCGML 169
+ DG A AL + + + K + ++ H A S +
Sbjct: 142 LDYDGNILDACTFALLAALKNAQLPEVTINEETGLAEVNLKKKSYLNIRTHPVATSFAVF 201
Query: 170 CGYPIVD 176
+ D
Sbjct: 202 DEWKWPD 208
>gi|332375881|gb|AEE63081.1| unknown [Dendroctonus ponderosae]
Length = 283
Score = 74.5 bits (181), Expect = 1e-11, Method: Composition-based stats.
Identities = 36/257 (14%), Positives = 76/257 (29%), Gaps = 24/257 (9%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
R+ GR R + L + ++A GS ++ +T +L +E P+ + G I
Sbjct: 19 FRVDGRDREGYRPMELETDIVQHAFGSARLRLANTDVLVAVKIEVDTPLPEKPF-EGKIE 77
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRM---IGRALRSVVDLSALGSRQIIIDCD 117
+T + R S + + LR + L ++ +D
Sbjct: 78 FFVDCSANATPDFEGRGGESLAVELANILSSAYESPLTFDLRKLCILKGKKCWKLYVDVL 137
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHME-------DCSNKFQLSQVLKGH-------VAA 163
+++ G A ALH D ++
Sbjct: 138 ILECGGNLFDAVSLAVKAALHITQVPKIKAVNIDGDNVEIEVSDNIIDCDRLNVENLPVL 197
Query: 164 ISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDS--GHIVEVQGSAERATFSQDHFFAMLN 221
++ + + IVD E+ ++ I + + ++ F L+
Sbjct: 198 VTVCKIGNHCIVDPSLTEEQCAVGSVVVAVSKECFSTITSI----GTGSLHEETLFECLD 253
Query: 222 LAKDRIADLIKLQKDVI 238
L L + ++
Sbjct: 254 LGHKVAIKLNQTLMAIL 270
>gi|326430620|gb|EGD76190.1| hypothetical protein PTSG_00897 [Salpingoeca sp. ATCC 50818]
Length = 304
Score = 74.5 bits (181), Expect = 1e-11, Method: Composition-based stats.
Identities = 35/253 (13%), Positives = 64/253 (25%), Gaps = 21/253 (8%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+R GR R + L A GS V+ T +L +E P R +
Sbjct: 37 IRCDGRDLLDRRPLELETGNITNANGSSRVQLMGTDVLVGVKVEVATPTDDRPDEGMLEF 96
Query: 61 AEYGMLPRSTGNR--VKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDV 118
+ +T + R E + AL G + DV
Sbjct: 97 SISSSSANATVAALDARTADKMTRSLEFLAEQLQKTSHALDLKKLCILPGKAVWCVRVDV 156
Query: 119 ---IQADGGTRTAAITGAWVALHDCLQHME----------------DCSNKFQLSQVLKG 159
G ALHD + + +
Sbjct: 157 LVLQSLGGNVVECVFLAIKAALHDTTIPNCTLIKDSNGEAVDFDISSNAYDVSPIEGVAE 216
Query: 160 HVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAM 219
+ G++ D + E+ D ++ SG + Q
Sbjct: 217 FPVILCFGIIGARVFADPLFEEEECADAFVLVGVSASGAVCLTQQVCAGRGVDPTTIIEA 276
Query: 220 LNLAKDRIADLIK 232
++ A+ + +++
Sbjct: 277 VDTARQAVKGVLE 289
>gi|125811424|ref|XP_001361870.1| GA21043 [Drosophila pseudoobscura pseudoobscura]
gi|54637046|gb|EAL26449.1| GA21043 [Drosophila pseudoobscura pseudoobscura]
Length = 296
Score = 74.5 bits (181), Expect = 1e-11, Method: Composition-based stats.
Identities = 39/261 (14%), Positives = 66/261 (25%), Gaps = 22/261 (8%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
R GR R + L + + GS ++ +T +L E VP + + G +
Sbjct: 22 FRCDGRSRRDYRPMELETGLVSNSSGSARLRLANTDILVGIKTEIDVPDPL-TPEFGKLE 80
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQII---IDCD 117
+T R Q L + +Q ID
Sbjct: 81 FFVDCSANATPEFEGRGGSDLAQELVLALENAYESPLAFDYRTLCLIPGQQCWKLYIDIL 140
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCS-------NKFQLSQVLKG--------HVA 162
+++ G A A ALH+ S + +
Sbjct: 141 ILECGGNLHDAVSLAAKAALHNTKLPQVTASLLDAGVTDLIISDNPYDCTRLTIDTVPLL 200
Query: 163 AISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGH--IVEVQGSAERATFSQDHFFAML 220
C + + E + V +G + + +D L
Sbjct: 201 VTVCKIGDYCLVDPSAEEEACSTVSIVVSVSMRNGEAFLSGSHMTG-GGAMHRDTMRNCL 259
Query: 221 NLAKDRIADLIKLQKDVISNE 241
NL L L V+ E
Sbjct: 260 NLGLSIGEQLNTLLAKVLKQE 280
>gi|326498189|dbj|BAJ94957.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 273
Score = 74.1 bits (180), Expect = 1e-11, Method: Composition-based stats.
Identities = 42/253 (16%), Positives = 84/253 (33%), Gaps = 33/253 (13%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+R+ GR+ R++ + +GS V+ G+T ++ T + V + G +
Sbjct: 24 LRVDGRRPFDFRKLKIAFG---REDGSAEVELGETRVMGYVTAQL-VQPYKDRPNEGTLA 79
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSA--------LGSRQI 112
P + GR G + E+ R+I R LR + +
Sbjct: 80 IFTEFSPMADPAFEP-----GRPGEAAIELGRVIDRGLRESRAVDMESLCVVAGKHVWSV 134
Query: 113 IIDCDVIQADGGTRTAAITGAWVALHDCLQHM-------------EDCSNKFQLSQVLKG 159
+D ++ +G AA A AL + D + L +
Sbjct: 135 RVDLHILDNEGNLIDAANIAALAALSTFRRPECTVGGDDGQQVTVHDSEVRDPLPLTIHH 194
Query: 160 HVAAISCGML--CGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFF 217
A++ ++D Y E++ + + +G + +Q + S
Sbjct: 195 LPIAVTFAYFGDGNIMVIDPTYKEEAVMGGRMTATINSNGDVCAIQKAGGEGVMS-SVIM 253
Query: 218 AMLNLAKDRIADL 230
L +A + AD+
Sbjct: 254 QCLRIASVKAADI 266
>gi|255725122|ref|XP_002547490.1| conserved hypothetical protein [Candida tropicalis MYA-3404]
gi|240135381|gb|EER34935.1| conserved hypothetical protein [Candida tropicalis MYA-3404]
Length = 225
Score = 74.1 bits (180), Expect = 1e-11, Method: Composition-based stats.
Identities = 39/229 (17%), Positives = 77/229 (33%), Gaps = 19/229 (8%)
Query: 14 ISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGNR 73
+ L + + A+GS + G T ++T+ + + + R
Sbjct: 6 VELRTSILENADGSAELTIGGTKVITSISGPIEPKQRQELPNQSSLEIIVRPATGLPTTR 65
Query: 74 VKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGA 133
K R +S I R L VV Q + ++ + AAI
Sbjct: 66 EKLIEDKLRSVLQSVIISYKYPRQLIQVV-------VQFCNTDESVEFNVNELNAAINSC 118
Query: 134 WVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVM 193
+ AL D + V +I+ G L P D+ DS V
Sbjct: 119 YFALIDADVALYSSFASV---------VISINSGNLIKEPTGDVLETSDSFHLVCFTIQD 169
Query: 194 TDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNEV 242
+ ++ ++ E F++ F +L+ + + +L +Q+ I +++
Sbjct: 170 AQAKKLLMLESQGE---FTEQELFTVLSESVHEVENLHTIQRKFIEDKI 215
>gi|193700001|ref|XP_001942946.1| PREDICTED: exosome complex exonuclease MTR3-like [Acyrthosiphon
pisum]
Length = 279
Score = 74.1 bits (180), Expect = 1e-11, Method: Composition-based stats.
Identities = 41/201 (20%), Positives = 68/201 (33%), Gaps = 8/201 (3%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+R GR + R + + + A+GS ++ G T L+ + ++VP + K G +
Sbjct: 40 VRCDGRDISAHRNLCIKTGIVTQAKGSAYLECGSTKLICSVFDPKEVPNKVEYAKTGELQ 99
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
E+ S R R Q + RAL + + +I I+ V++
Sbjct: 100 CEFKFATFSCRQRRTY----TRDSEERQLC-NELRRALEPAICRGEFANFEIHINVLVLE 154
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
DG AAIT A +AL D M D L + + +
Sbjct: 155 NDGSVLAAAITAAGLALMDGCIPMYDVIVATSLGIYKNKILVDPTYDEETLCSSTIDNGE 214
Query: 181 EDSTIDVDANFVMTDSGHIVE 201
M + I E
Sbjct: 215 N---RGTVMLAYMKNLQQITE 232
>gi|328866220|gb|EGG14605.1| Putative exosome complex exonuclease RRP45 [Dictyostelium
fasciculatum]
Length = 469
Score = 74.1 bits (180), Expect = 2e-11, Method: Composition-based stats.
Identities = 43/255 (16%), Positives = 83/255 (32%), Gaps = 17/255 (6%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+R+ GR+ + MR++ ++ G V+ G T + T+ + E P R + ++
Sbjct: 21 LRIDGRRLDDMRDVKISFG---KEYGMVEVQLGRTRVYTSVSCEVAEPRPERPNEGFFVF 77
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALG--SRQIIIDCDV 118
+ + R + + GR E RA+ + G +I+ + +
Sbjct: 78 NTNISQMSNVEVDIGRSNPAELELGRLVERGLKESRAIDTEALCIVAGQKVWRIVTNIHI 137
Query: 119 IQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQ-----------VLKGHVAAISCG 167
+ G A AL + + V+
Sbjct: 138 LDDCGNLLDCASISVITALLHFRKPDVTLVGNEATIHTLEEREPVPLSIHHYPVSVTFGF 197
Query: 168 MLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRI 227
IVD D E+ ID +F++ I V S +T S D +A +R
Sbjct: 198 FPDSLMIVDPDAKEEMVIDGKLSFLVNVHKEICGVSKSGGMST-SIDQVIKCSKMAINRA 256
Query: 228 ADLIKLQKDVISNEV 242
D+ + + +
Sbjct: 257 FDITNKIRIALHESI 271
>gi|270692628|ref|ZP_06222937.1| DNA (cytosine-5-)-methyltransferase [Haemophilus influenzae HK1212]
gi|270316038|gb|EFA28070.1| DNA (cytosine-5-)-methyltransferase [Haemophilus influenzae HK1212]
Length = 181
Score = 74.1 bits (180), Expect = 2e-11, Method: Composition-based stats.
Identities = 16/72 (22%), Positives = 26/72 (36%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R+ GR + +R + + V GS + G+T L ATL + I + +
Sbjct: 39 RIDGRTVDTVRALDICTGVLPRTHGSAIFTRGETQALAVATLGTERDAQIIDEFNNNGKM 98
Query: 62 EYGMLPRSTGNR 73
NR
Sbjct: 99 IKNWFEWEKDNR 110
>gi|168006598|ref|XP_001755996.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162692926|gb|EDQ79281.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 319
Score = 74.1 bits (180), Expect = 2e-11, Method: Composition-based stats.
Identities = 47/275 (17%), Positives = 80/275 (29%), Gaps = 44/275 (16%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+R GR + R S+ A+GS LVK G+T +L LE P G +
Sbjct: 39 VRPDGRPLTRARPTSVNLGSIATADGSALVKIGNTTMLAGVKLEVITPSTASP-NQGQVA 97
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRAL------RSVVDLSALGSRQIII 114
++ M + GR + + + AL G I
Sbjct: 98 VDFQMPSICSP-----LVRPGRPAEAAWVVSEQLSNALVSSNFVNLQQLCIVPGKAAWIA 152
Query: 115 DCDVIQADGG-------------------------TRTAAITGAWVALHDCLQ------- 142
DV D T T + D Q
Sbjct: 153 YVDVYCLDADGSLLDAALLAAVAALTHLQLPAVKVTETGRVVPLKNHNGDAGQEVDSIAK 212
Query: 143 HMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEV 202
ED K + A++C + + D E+S + + +M SG ++
Sbjct: 213 KNEDQIVKSRQRLERSSMPIALTCVSHRKHLLADPSAEEESILQMSLTVIMDTSGRLISF 272
Query: 203 QGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
+ + L K R+A++ + ++
Sbjct: 273 YKPGGAVAATSATVKDCIELTKKRVAEVNSIFEEA 307
>gi|164660188|ref|XP_001731217.1| hypothetical protein MGL_1400 [Malassezia globosa CBS 7966]
gi|159105117|gb|EDP44003.1| hypothetical protein MGL_1400 [Malassezia globosa CBS 7966]
Length = 253
Score = 74.1 bits (180), Expect = 2e-11, Method: Composition-based stats.
Identities = 29/197 (14%), Positives = 56/197 (28%), Gaps = 7/197 (3%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+R GR+ + R + L + A GS L++ G T ++ + +V +
Sbjct: 20 VRPDGRKAEEPRPLYLQTGIIPSASGSTLLESGHTKIVCSVHGPRQV-RGRHYAGKAEVN 78
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
++ M P S R +I +AL + L L I + V+
Sbjct: 79 VQFEMAPFSEKERRSSRDTEAPVP------AALIQQALLPAIRLDLLPKSSIDVHITVLD 132
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
+D A GA A + + + + +
Sbjct: 133 SDTSMLGCAAMGATAASAALAEAGVQMLGLVTGATATAISTLPSTNKAQQLWLVDPTHRE 192
Query: 181 EDSTIDVDANFVMTDSG 197
+ + G
Sbjct: 193 YADSHSHLMICGLPALG 209
>gi|321475274|gb|EFX86237.1| hypothetical protein DAPPUDRAFT_193332 [Daphnia pulex]
Length = 218
Score = 74.1 bits (180), Expect = 2e-11, Method: Composition-based stats.
Identities = 25/233 (10%), Positives = 62/233 (26%), Gaps = 26/233 (11%)
Query: 9 NQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPR 68
N +R + + V A+GS + G+T ++ + + + + +I Y
Sbjct: 6 NSIRALKCEQSVLSRADGSVMFSQGNTVVMASVYGPLEAKIQKELSDRMYIELNYKPKTG 65
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
G + +++I ++ + + I +Q G A
Sbjct: 66 M-------------PGVAERGKEKLIKTTCNHIILTNLHPRTAVCITVQEMQDGGTLLAA 112
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
+I +AL D ++ V K + + +
Sbjct: 113 SINAVCLALLDSGLPLQCLVA-AVTCLVDKKDRIILDPCISTVKEGYKAMFTFAFDSQKY 171
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
+ G + F + L + + + + +
Sbjct: 172 NLILSHCEGQV------------PYQLFQKAMVLCQKASHVIFDFYRQAVLRK 212
>gi|47210411|emb|CAF91679.1| unnamed protein product [Tetraodon nigroviridis]
Length = 276
Score = 74.1 bits (180), Expect = 2e-11, Method: Composition-based stats.
Identities = 44/236 (18%), Positives = 77/236 (32%), Gaps = 15/236 (6%)
Query: 6 RQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIR-NTKHGWITAEYG 64
R++ +R + + + A+GS ++ G T LL + + + G +TA+
Sbjct: 40 REQADVRPVFVRCGLGSQAKGSAYMEAGATKLLCCVYGPRETERKDETDMRCGRLTADVR 99
Query: 65 MLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGG 124
P S R S + ++ M+ +L+ V L QI + V++ G
Sbjct: 100 FAPFSCPERGSWIQGS-----QDRDFSSMLLESLQPAVCLHRYPRSQIEVHLVVLENGGS 154
Query: 125 TRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDST 184
A+T A VAL D M D S Y G
Sbjct: 155 VLAHAVTCASVALADAGIQMYDLVLG------CSLRQDGASFVADPTYAEESGRAGPGGP 208
Query: 185 IDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
+ I ++ E A +D A + + L + + V+S
Sbjct: 209 RGGLTVAFLPSLNQISGLRSDGEMA---EDTLRAGVRTCIEGCYKLYPVVRQVLSR 261
>gi|308801625|ref|XP_003078126.1| Exosomal 3'-5' exoribonuclease complex, subunit Rrp41 and related
exoribonucleases (ISS) [Ostreococcus tauri]
gi|116056577|emb|CAL52866.1| Exosomal 3'-5' exoribonuclease complex, subunit Rrp41 and related
exoribonucleases (ISS) [Ostreococcus tauri]
Length = 378
Score = 73.7 bits (179), Expect = 2e-11, Method: Composition-based stats.
Identities = 38/240 (15%), Positives = 69/240 (28%), Gaps = 22/240 (9%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+R GR +R L R A GS + T ++ ++ W G I
Sbjct: 128 LRPDGRSREMLRRQRLHRSRVPSASGSAEYRIDGTIVVAAVHGPLRIAPWREAHDRGVID 187
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
E + + + R A+ V+L + I V+
Sbjct: 188 VELSAPGWMSRDDQRACEGRLR-------------GAIERCVELRDFPRFGLRISARVVS 234
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
DG A + AL D M + A G + P +
Sbjct: 235 DDGNAEAACVNAVCCALIDANVPMRG--------LICANACALTREGSMVIDPTKREETE 286
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
+ + A + I + G + ++ + + D A ++ +QK I+
Sbjct: 287 ARAVVRACALSKHREKDEI-AIVGCSTTGALTEKEYLDAIAFIVDATAAVVNIQKKSIAR 345
>gi|164428624|ref|XP_964355.2| hypothetical protein NCU00812 [Neurospora crassa OR74A]
gi|157072219|gb|EAA35119.2| conserved hypothetical protein [Neurospora crassa OR74A]
Length = 257
Score = 73.7 bits (179), Expect = 2e-11, Method: Composition-based stats.
Identities = 37/241 (15%), Positives = 67/241 (27%), Gaps = 18/241 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+R+ GR+ N++R I R A+GS ++ G T ++ + P R G
Sbjct: 13 LRVDGRRWNELRRIHAQIRTQAAADGSSYLEMGHTKVMCVVNGPSE-PGPRRGATSGGGG 71
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
K V+ R + I I V+
Sbjct: 72 GGGQ---------SKNAEVAVNIVIAGFSSVDRKRRGRGDNLHTHLFPHSTINISLHVLS 122
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
DG A I A +A D M D A + ++
Sbjct: 123 QDGSLLAALINAATLACVDAGIPMTDY---VAACTAGSTSTYAANDEGADPLLDMNHQEE 179
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
++ A +D ++ + ML + D + ++ V+
Sbjct: 180 QELPGLTVATLGDSDRVAVLVCES-----RVQVSRLEGMLAVGVDGCKQVREILDRVVRE 234
Query: 241 E 241
+
Sbjct: 235 K 235
>gi|37359778|dbj|BAC97867.1| mKIAA0116 protein [Mus musculus]
Length = 286
Score = 73.7 bits (179), Expect = 2e-11, Method: Composition-based stats.
Identities = 35/258 (13%), Positives = 73/258 (28%), Gaps = 19/258 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+R+ GR R + + V GS VK G T L E P + G++
Sbjct: 17 LRVDGRGCEDYRCVEVETDVVSNTSGSARVKLGHTDFLVGVKAEMGTPK-LEKPNEGYLE 75
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRA---LRSVVDLSALGSRQIIIDCD 117
+T R + + ++ LRS+ + +D
Sbjct: 76 FFVDCSANATPEFEGRGGDDLGTEIANTLYRIFNNKSSVDLRSLCISPREHCWVLYVDVL 135
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMED-------CSNKFQLSQVLKGH-------VAA 163
+++ G A AL + +
Sbjct: 136 LLECGGNLFDAISIAVKAALFNTRIPRVRVLEDEEGAKDIELSDDPYDCIRLSVENVPCI 195
Query: 164 ISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLA 223
++ + +VD E++ +T G + ++ + + + F M+ +
Sbjct: 196 VTLCKIGCRHVVDATLQEEACSLASLLVSVTSKGVVTCMRKVGK-GSLDPESIFEMMESS 254
Query: 224 KDRIADLIKLQKDVISNE 241
K L + ++ E
Sbjct: 255 KRVGKVLHVSLQSLLHKE 272
>gi|66814304|ref|XP_641331.1| hypothetical protein DDB_G0280251 [Dictyostelium discoideum AX4]
gi|74855928|sp|Q54VM4|EXOS7_DICDI RecName: Full=Putative exosome complex exonuclease RRP42; AltName:
Full=Exosome component 7; AltName: Full=Ribosomal
RNA-processing protein 42
gi|60469358|gb|EAL67352.1| hypothetical protein DDB_G0280251 [Dictyostelium discoideum AX4]
Length = 324
Score = 73.7 bits (179), Expect = 2e-11, Method: Composition-based stats.
Identities = 35/303 (11%), Positives = 71/303 (23%), Gaps = 64/303 (21%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE------EKVPMWIRNT 54
+R GR R ++ +A GS VK T +L E E ++
Sbjct: 20 IRSDGRNRVDYRNFAIETGEIIHANGSARVKLSQTEVLVGVKAEITHIQSEITSNLQQSD 79
Query: 55 KHGWITAEYGMLPRSTGNRVKR-----EAVSGRQGGRSQEIQRMIGRAL----------- 98
+ P ++ + +Q R +I
Sbjct: 80 TSKRLVFSVNCCPSASPEFEGKGSEFLNIELSKQLERLYSHPNVIKNLKLTNPIISNNNN 139
Query: 99 ---------------------------RSVVDLSALGSRQIIIDCDVIQADGGTRTAAIT 131
+S + +D V+ +DG A
Sbjct: 140 NNNKIKEAEEGKEKEKEGDIITNSGDDNCFSIVSGKYYWTLYVDAIVLDSDGNLFDALSI 199
Query: 132 GAWVALHDCLQHMEDCSNKF--------------QLSQVLKGHVAAISCGMLCGYPIVDL 177
AL + LS + ++ + ++D
Sbjct: 200 ACRSALQNTRIPRVKAIQGEYEEITFEVSDDPEDTLSLSIDNVPICVTLTKIGNQFVIDT 259
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
E+ ++ + +I +Q M+N AK ++ +
Sbjct: 260 TLQEELCMNARLTVGVNSLANICSIQKGG-IDGLDPTTINQMINTAKVVGVKILNIMDKT 318
Query: 238 ISN 240
+
Sbjct: 319 LKE 321
>gi|225441838|ref|XP_002284088.1| PREDICTED: similar to 3-5-exoribonuclease/RNA binding protein-like
protein [Vitis vinifera]
Length = 303
Score = 73.7 bits (179), Expect = 2e-11, Method: Composition-based stats.
Identities = 48/265 (18%), Positives = 88/265 (33%), Gaps = 26/265 (9%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+R R + R+ SL A+GS L K G T +L +E P + G I
Sbjct: 36 IRPDARPLGRARDTSLALGAVASADGSALAKIGCTTMLAAVKMEVMTPP-KESPDEGSIA 94
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGS---RQIIIDCD 117
E+ M P + Q ++ + ++ +LS + +D
Sbjct: 95 IEFYMPPICSPLVRPGRPAEEAPVVSKQLSDTILSSGMINLKELSLVSGKAAWMAYLDIY 154
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHME----------------------DCSNKFQLSQ 155
+ ADG AA+ A A + + NK +
Sbjct: 155 CLDADGSLFDAALLAAVAAFSHLRIPVVSLNEEGRVVVVSEENEEGKSEKEPVNKGKRKL 214
Query: 156 VLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDH 215
L +++C + Y + D E+S ++ V+ SG +V +
Sbjct: 215 TLSSLPFSLTCILHKNYILADPTAEEESIMETLVTVVLDSSGQLVSLYKPGGPVLAYASA 274
Query: 216 FFAMLNLAKDRIADLIKLQKDVISN 240
+ L + R+ +L + + IS+
Sbjct: 275 VQDCIALTRQRVKELKSILNEAISD 299
>gi|293335373|ref|NP_001168912.1| hypothetical protein LOC100382718 [Zea mays]
gi|223973667|gb|ACN31021.1| unknown [Zea mays]
Length = 209
Score = 73.7 bits (179), Expect = 2e-11, Method: Composition-based stats.
Identities = 40/226 (17%), Positives = 77/226 (34%), Gaps = 25/226 (11%)
Query: 16 LTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGNRVK 75
+ + A GS +FG T ++ + + + + G + +T R
Sbjct: 1 MQTGPTTAASGSAYAEFGKTKVIVSVFGPRESKKAMMYSDVGRLNCNVSYTTFATPVRG- 59
Query: 76 REAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWV 135
QG ++E M+ +AL V L + + V+++ G I+ A +
Sbjct: 60 -------QGADNKEYSSMLHKALEGAVMLHTFPKTTVDVFALVLESGGSDLPIIISCASL 112
Query: 136 ALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANF-VMT 194
AL D M D V ++S I+D E++ D M
Sbjct: 113 ALADAGIMMYDL-------------VTSVSVSCFRKNIIIDPTSDEEAWQDGSLVVAFMP 159
Query: 195 DSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
I ++ + E +S + L D + L + +D + +
Sbjct: 160 ARKEITQLTLTGE---WSDGRITNAVELCMDACSKLGDILRDRLKD 202
>gi|226329677|ref|ZP_03805195.1| hypothetical protein PROPEN_03587 [Proteus penneri ATCC 35198]
gi|225202863|gb|EEG85217.1| hypothetical protein PROPEN_03587 [Proteus penneri ATCC 35198]
Length = 267
Score = 73.7 bits (179), Expect = 2e-11, Method: Composition-based stats.
Identities = 35/232 (15%), Positives = 74/232 (31%), Gaps = 27/232 (11%)
Query: 14 ISLTRRV-SKYAEGSCLVKFGDTHLL----TTATLEEKVPMWIRNTKHGWITAEYGMLPR 68
+SL + ++ A + +V T + ++ + + + G +P
Sbjct: 16 VSLETGMMARQATAAVMVDMDGTAVFVTVVAKKKVKAGQDFFPLTVNYQERSYAAGRIPG 75
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
S R GR G I R+I R LR + L QI+ +
Sbjct: 76 SFFRR------EGRPGEGETLIARLIDRPLRPLFPEGFLNEIQIVATVVSVNPQVNPDIV 129
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+ G + G + G + G +++ E +D
Sbjct: 130 AMIG-------------ASAVLALSGVPFNGPIGGARVGFIDGQYVLNPTVDELKVSKLD 176
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
T +G ++ V+ +E S++ + D+ +I+ +++
Sbjct: 177 LVVAGT-AGAVLMVE--SEADLLSEEEMLGAVVFGHDQQQVVIENINALVAE 225
>gi|114649403|ref|XP_001147354.1| PREDICTED: exosome component 8 isoform 2 [Pan troglodytes]
Length = 210
Score = 73.7 bits (179), Expect = 2e-11, Method: Composition-based stats.
Identities = 29/185 (15%), Positives = 53/185 (28%), Gaps = 13/185 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R GR+ + R ++ A+GS LVK G+T ++ E P G++
Sbjct: 23 RPDGRELGEFRTTTVNIGSISTADGSALVKLGNTTVICGVKAEFAAPPT-DAPDKGYVVP 81
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGS---RQIIIDCDV 118
+ P + Q + + DL + D
Sbjct: 82 NVDLPPLCSSRFRSGPPGEEAQVASQFIADVIENSQIIQKEDLCISPGKLVWVLYCDLIC 141
Query: 119 IQADGGTRTAAITGAWVALHDCLQHME---------DCSNKFQLSQVLKGHVAAISCGML 169
+ DG A AL + + + K + ++ H A S +
Sbjct: 142 LDYDGNILDACTFALLAALKNVQLPEVTINEETALAEVNLKKKSYLNIRTHPVATSFAVF 201
Query: 170 CGYPI 174
+
Sbjct: 202 DEWKW 206
>gi|328773489|gb|EGF83526.1| hypothetical protein BATDEDRAFT_9008 [Batrachochytrium
dendrobatidis JAM81]
Length = 285
Score = 73.3 bits (178), Expect = 2e-11, Method: Composition-based stats.
Identities = 36/235 (15%), Positives = 61/235 (25%), Gaps = 12/235 (5%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+R GR R L A GS VK GDT ++ E P + +
Sbjct: 38 VRADGRPLLHFRNTELDFGPITSASGSVSVKVGDTSVICAIKAELAEPAPTLPYQGYLVP 97
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQI--IIDCDV 118
++ R + G L G D
Sbjct: 98 NVDLPALCASHFRPGPPCELAQSISTFLNNIISSGNVLDLESLCVVPGKVVWVLYADIVC 157
Query: 119 IQADGGTRTAAITGAWVALHDCLQHME---DCSNKFQLSQVLKG------HVAAISCGML 169
+ G A++ AL + D S + K +++
Sbjct: 158 LNYAGNIFDASVDALIAALCNVKLPEVTISDESAPVINNLPAKPLKLNRILISSTFAIFD 217
Query: 170 CGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAK 224
+ D + E+ + V+ D I + + ++ L LAK
Sbjct: 218 GQTLLADPTHEEEPLVSSTVTIVVDDKDCICAIHKPG-GVSITKAVIDECLTLAK 271
>gi|115960400|ref|XP_001175624.1| PREDICTED: similar to ENSANGP00000026025, partial
[Strongylocentrotus purpuratus]
Length = 104
Score = 73.3 bits (178), Expect = 2e-11, Method: Composition-based stats.
Identities = 16/75 (21%), Positives = 30/75 (40%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R GR ++R I L A+GSC ++ +T ++ +VP +G +
Sbjct: 7 RQDGRSPLEIRPIFLKAGAVSQAKGSCYMEMKNTKVICAVYGPREVPRRDGFVINGQLRC 66
Query: 62 EYGMLPRSTGNRVKR 76
E+ ++ R
Sbjct: 67 EFKFATFASEVRHGH 81
>gi|239609714|gb|EEQ86701.1| exosome complex endonuclease 1/ribosomal RNA processing protein
[Ajellomyces dermatitidis ER-3]
gi|327355373|gb|EGE84230.1| exosome complex endonuclease 1/ribosomal RNA processing protein
[Ajellomyces dermatitidis ATCC 18188]
Length = 293
Score = 73.3 bits (178), Expect = 3e-11, Method: Composition-based stats.
Identities = 35/266 (13%), Positives = 70/266 (26%), Gaps = 32/266 (12%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE------EKVPMWIRNT 54
+RL GR+ N++R + + + GS + G+T ++ E
Sbjct: 14 LRLDGRRWNELRLMQAQISTNPASSGSSYLSMGNTVVICMVHGPAEGRRSEATGPAREGA 73
Query: 55 KHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIII 114
G R RQ S ++ + A + + I +
Sbjct: 74 VVSVAVNVAGFSGVDRKKRGATGGGGDRQ--ASTDLATALRDAFQPHLHTHLYPHSTISL 131
Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLK-----GHVAAISCGML 169
V+ +DG A I +AL D M + + A G+
Sbjct: 132 HVSVLSSDGSLFAACINACTLALVDAGIPMPGLLCACTVGMSGRASTPAAPELARVGGIN 191
Query: 170 CGYPIVDLDYGEDSTIDVDANFVMT----------------DSGHIVEVQGSAERATFSQ 213
+ + T ++ + VQ +
Sbjct: 192 ESLDPLLDMSMPEEQELPFMTVANTNPAPTGDDSMDDEEGEENQMLSVVQM---ESGVHI 248
Query: 214 DHFFAMLNLAKDRIADLIKLQKDVIS 239
+ M + D + ++ V+
Sbjct: 249 SYLETMFAVGLDGCKQVREILNGVLK 274
>gi|156383487|ref|XP_001632865.1| predicted protein [Nematostella vectensis]
gi|156219927|gb|EDO40802.1| predicted protein [Nematostella vectensis]
Length = 268
Score = 73.3 bits (178), Expect = 3e-11, Method: Composition-based stats.
Identities = 37/253 (14%), Positives = 79/253 (31%), Gaps = 20/253 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
RL GR R++ + V + G C V+ G T +L + E P R G I
Sbjct: 1 RLDGRGIYDYRKLRIAFSVER---GHCEVQLGKTRVLAQVSCEITKPKTNR-QTDGHIYI 56
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIG-RALRSVVDLSALGS--RQIIIDCDV 118
+ P ++ + I RA+ + G + +D V
Sbjct: 57 NVELSPMASPAFEAGRMSELGVELNRFVERFYIESRAIDTESLCIVAGEKVWSVRVDIQV 116
Query: 119 IQADGGTRTAAITGAWVALHDCLQHM----------EDCSNKFQLSQVLKGHVAAISCGM 168
+ G A A AL + +++ + + ++
Sbjct: 117 LDHSGNILDCACISAITALSHFRRPDVSVSGEEVTIHSEADRDPVPLSILHMPICVTFAF 176
Query: 169 LCGYPIV--DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226
++ D + E++ +D + + + D N+A +
Sbjct: 177 FDNGELLLVDPNDKEEAVMDGHMMMALNIHREVCGAVMGG-GVSLETDQIIRCSNIAVVK 235
Query: 227 IADLIKLQKDVIS 239
+A++ +L + ++
Sbjct: 236 VAEITELIEKALA 248
>gi|145344813|ref|XP_001416919.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144577145|gb|ABO95212.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 260
Score = 73.3 bits (178), Expect = 3e-11, Method: Composition-based stats.
Identities = 39/240 (16%), Positives = 69/240 (28%), Gaps = 22/240 (9%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+R GR +R L R A GS T ++ T +KV W + G +
Sbjct: 7 LRGDGRSSEMLRRQRLHRHYVAGAHGSAEYAIDGTIVVATVHGPQKVKPWREEVERGIVE 66
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
E T + R A+ + V + ++
Sbjct: 67 FELTSASGMTREEERACEARVR-------------GAIEATVVRYDFPRLGLRATARIVS 113
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
DG A + AL D M + A +S G P +
Sbjct: 114 DDGNAEAACVNALCCALIDADVAMHG--------LICANACAILSDGTKVIDPTKREENE 165
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
+ + A + I + G + +++ + + D A ++ QK I+
Sbjct: 166 ARAVVRACALSKYREKEEI-AIVGCSTTGALTEEEYLESIAFIVDATASVVNFQKKSIAR 224
>gi|261196958|ref|XP_002624882.1| exosome complex endonuclease 1/ribosomal RNA processing protein
[Ajellomyces dermatitidis SLH14081]
gi|239596127|gb|EEQ78708.1| exosome complex endonuclease 1/ribosomal RNA processing protein
[Ajellomyces dermatitidis SLH14081]
Length = 293
Score = 73.3 bits (178), Expect = 3e-11, Method: Composition-based stats.
Identities = 35/266 (13%), Positives = 70/266 (26%), Gaps = 32/266 (12%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE------EKVPMWIRNT 54
+RL GR+ N++R + + + GS + G+T ++ E
Sbjct: 14 LRLDGRRWNELRLMQAQISTNPASSGSSYLSMGNTVVICMVHGPAEGRRSEATGPAREGA 73
Query: 55 KHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIII 114
G R RQ S ++ + A + + I +
Sbjct: 74 VVSVAVNVAGFSGVDRKKRGATGGGGDRQ--ASTDLATALRDAFQPHLHTHLYPHSTISL 131
Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLK-----GHVAAISCGML 169
V+ +DG A I +AL D M + + A G+
Sbjct: 132 HVSVLSSDGSLFAACINACTLALVDAGIPMPGLLCACTVGMSGRASTPAAPELARVGGIN 191
Query: 170 CGYPIVDLDYGEDSTIDVDANFVMT----------------DSGHIVEVQGSAERATFSQ 213
+ + T ++ + VQ +
Sbjct: 192 ESLDPLLDMSMPEEQELPFMTVANTNPAPTGDDSMDDEEGEENQMLSVVQM---ESGVHI 248
Query: 214 DHFFAMLNLAKDRIADLIKLQKDVIS 239
+ M + D + ++ V+
Sbjct: 249 SYLETMFAVGLDGCKQVREILNGVLK 274
>gi|126697382|gb|ABO26648.1| exosome component 5 [Haliotis discus discus]
Length = 211
Score = 73.3 bits (178), Expect = 3e-11, Method: Composition-based stats.
Identities = 31/234 (13%), Positives = 65/234 (27%), Gaps = 27/234 (11%)
Query: 9 NQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPR 68
+R ++ V +G+ GDT +L +V + + Y
Sbjct: 2 TDLRPMTSDLGVLTRPDGTVTFTQGDTGILAAVYGPGEVKIAREILDRATVEVIYKPKSG 61
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
G + +R I + +V+ S I + +Q G
Sbjct: 62 L-------------PGCSERLHERYIRNTVETVILASLHPRSCISVTVQELQDSGSLLAC 108
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
++ A +AL D +M+ V I + DL + V
Sbjct: 109 SVNAACLALLDACVNMKYLIAG----------VYVIIDREGNTVLVPDLKQEGEKVAGVT 158
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNEV 242
+ + R + + + F L A+ + + + ++
Sbjct: 159 FVLENQTYSVVTM----SSRGSLTTEQFHRCLLHAQAAAKQIFSFYRIAVEKKM 208
>gi|330804424|ref|XP_003290195.1| hypothetical protein DICPUDRAFT_154682 [Dictyostelium purpureum]
gi|325079706|gb|EGC33294.1| hypothetical protein DICPUDRAFT_154682 [Dictyostelium purpureum]
Length = 303
Score = 73.3 bits (178), Expect = 3e-11, Method: Composition-based stats.
Identities = 44/254 (17%), Positives = 80/254 (31%), Gaps = 17/254 (6%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R+ GR MR I + + G V+ G T + T+ T + P R + ++
Sbjct: 22 RIDGRSITDMRSIKIEFG---KSFGLVEVQLGKTRVYTSITCDIVEPKPERPNEGFYVFN 78
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALG--SRQIIIDCDVI 119
S R + GR E RA+ + G I I ++
Sbjct: 79 TDISPMSSVSVDPNRGNPLENELGRIIEKGLKESRAIDTESLCIISGSKVWSIKISIHIL 138
Query: 120 QADGGTRTAAITGAWVALHDCLQHMED----------CSNKFQLSQVLKGHVAAISCGML 169
G A AL + + + + +I+ G
Sbjct: 139 DDCGNLLDCASISVIAALLHFRKPDVTVIGNEATIHPIDEREPVPLSIHHTPISITFGFF 198
Query: 170 CGYPIV-DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIA 228
++ D D E+S +D +F++ I V + S +A + A
Sbjct: 199 PNEIMIVDPDNKEESVMDGKLSFLVNIHKEICGVSKGG-GTSTSVHQVLKCSKIAVIKAA 257
Query: 229 DLIKLQKDVISNEV 242
++ K+ I N++
Sbjct: 258 EITLQIKESIINDI 271
>gi|225718102|gb|ACO14897.1| Exosome complex exonuclease RRP42 [Caligus clemensi]
Length = 289
Score = 73.0 bits (177), Expect = 3e-11, Method: Composition-based stats.
Identities = 32/240 (13%), Positives = 67/240 (27%), Gaps = 22/240 (9%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+R+ GRQ +R + L + +A GS V+ +T +L E + +
Sbjct: 22 IRVDGRQRKDVRPMILETDIITHANGSARVQLSNTDVLVGVKAE--LCEHKPGGGLEFYV 79
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD--- 117
R + S + + I+ D
Sbjct: 80 DCSANASPVFEGRGGEDLALEIASTPSSSYSDN--KLFNRSILNVLQNRYAWILHVDVLI 137
Query: 118 ---VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAA----------- 163
++A+ A A H+ D ++ +
Sbjct: 138 LEVEGGNLFDVASSAVKAALFATQIPKVHIVDVDGGVPEIELSEDPDECFRLDVSNAPVL 197
Query: 164 ISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLA 223
++ + + I D E++ ++ SG I ++ + +F D L+ A
Sbjct: 198 VTLNRIGHFCIADASPNEEACSSAAMVIAVSPSGRISSLRKIGD-GSFHPDTLDDALSTA 256
>gi|71018287|ref|XP_759374.1| hypothetical protein UM03227.1 [Ustilago maydis 521]
gi|46099099|gb|EAK84332.1| hypothetical protein UM03227.1 [Ustilago maydis 521]
Length = 273
Score = 73.0 bits (177), Expect = 3e-11, Method: Composition-based stats.
Identities = 48/242 (19%), Positives = 80/242 (33%), Gaps = 21/242 (8%)
Query: 1 MRLSGRQENQMREISLTRRVSK--YAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW 58
R+ GR++ ++R I + S+ A+G + G T + T +
Sbjct: 12 FRIDGRKQFELRSIGIQLGGSQDTAADGCAQITQGLTIVSATVFGPREARS---GANVMH 68
Query: 59 ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDV 118
A + R R E I V+ QI I V
Sbjct: 69 DRASVNVEVSVAPWGSMERRRRNRGDRRLVEFANSIKSTFEPVIHTHLYPRSQIDIFVQV 128
Query: 119 IQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLD 178
Q DGG AAI + +AL D M+D VA++SCG+ ++DL
Sbjct: 129 HQQDGGVLPAAINASTLALLDAGIAMQDF-------------VASVSCGIHSTSAMLDLS 175
Query: 179 YGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
E+ + V+ + I + + F + LA +A L + +
Sbjct: 176 NTEEQDLPHVTVAVLPRTKQITLA---SLETRLHVERFEQIFTLAIQAVAVLHNEMELAV 232
Query: 239 SN 240
+
Sbjct: 233 RD 234
>gi|327296349|ref|XP_003232869.1| exosome complex endonuclease 1/ribosomal RNA processing protein
[Trichophyton rubrum CBS 118892]
gi|326465180|gb|EGD90633.1| exosome complex endonuclease 1/ribosomal RNA processing protein
[Trichophyton rubrum CBS 118892]
Length = 302
Score = 73.0 bits (177), Expect = 3e-11, Method: Composition-based stats.
Identities = 35/272 (12%), Positives = 75/272 (27%), Gaps = 36/272 (13%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIR-NTKHGWI 59
+RL GR+ N++R + + + GS + G+T +L T + I
Sbjct: 14 LRLDGRRWNELRLLQAQISTNPASSGSSYLSMGNTAVLCTVHGPAEGKRSETAGAAGAVI 73
Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRS--QEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
+ + +R K+ A G R E+ + A + + I +
Sbjct: 74 NVVVNLAGFANVDRKKKSATGSGGGDRQATTELANSLRDAFQPHIHAHLYPRSTITVHVS 133
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC------- 170
V+ +DG A + +AL D M + + A++
Sbjct: 134 VLSSDGSLLAACLNACTLALVDAGIPMPGLLCACTVGMSGRASTPAVTAESAQIGGIKES 193
Query: 171 ----------GYPIVDLDYGEDSTIDVDANFV-------------MTDSGHIVEVQGSAE 207
+ ++ D ++ + V +
Sbjct: 194 LDPLLDISAPEEVELPYMTVANTNPMPDITVPKDEEDEEDDEYDAENENQMLSIVHMDS- 252
Query: 208 RATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
+ M + D ++ V+
Sbjct: 253 --GVHVSYLETMFAVGIDGCKQTREILNGVLK 282
>gi|299753339|ref|XP_001833208.2| mRNA transport regulator 3 [Coprinopsis cinerea okayama7#130]
gi|298410256|gb|EAU88481.2| mRNA transport regulator 3 [Coprinopsis cinerea okayama7#130]
Length = 259
Score = 73.0 bits (177), Expect = 3e-11, Method: Composition-based stats.
Identities = 32/242 (13%), Positives = 68/242 (28%), Gaps = 22/242 (9%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R R +R I L + + A GS ++ G T + + + G +
Sbjct: 38 RQD-RLPLAIRPIFLQPGLIEQANGSAYIETGKTKIACAIYGPRQSKN-VAFHDKGRLNV 95
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
E P S R + + I I +A+ V L L +
Sbjct: 96 ELKFAPFSCPKRRAPIRDAEDRS-----IAMAIHQAILPSVRLETLPKSTV--------- 141
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL-DYG 180
+ + + + + G VA+ S ++ +D +
Sbjct: 142 --DVFITVLEEDGIEGCVAAGSVAASAALVDAGIEVFGIVASTSAAVIGEEIWLDPSEQE 199
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
+ M I + + E A D + + + + D+ + + +
Sbjct: 200 SSQSKGTFVLATMPALNTITSIWQNGEMAP---DQVLKAMEICEKQCVDIHTVVAERLRE 256
Query: 241 EV 242
+
Sbjct: 257 TL 258
>gi|240849627|ref|NP_001155833.1| 3 exoribonuclease-like [Acyrthosiphon pisum]
gi|239791374|dbj|BAH72161.1| ACYPI010191 [Acyrthosiphon pisum]
Length = 400
Score = 73.0 bits (177), Expect = 4e-11, Method: Composition-based stats.
Identities = 44/250 (17%), Positives = 81/250 (32%), Gaps = 22/250 (8%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+RL GR++++ R + + + G+CLV G T + + E P R G +
Sbjct: 22 IRLDGRKKDEYRPLKIAYGLD---WGNCLVTLGCTRVFAQVSCEIYQPNNSRP-NEGVLQ 77
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
+ N++ + R + + I L ++ ++ +I +D V+
Sbjct: 78 ISAELA---GDNKINDLTKINQVLERFYKDSKCID--LEALCIIAEEKVWKIKVDLSVLN 132
Query: 121 ADGGTRTAAITGAWVALHDCLQHME------------DCSNKFQLSQVLKGHVAAISCGM 168
DG T AL + LS +A+ +
Sbjct: 133 MDGNTLGCCSIATLAALMHFRYPDVVSTGEKVVVYSSSERDPIPLSLHHHPVIASFAIFE 192
Query: 169 LCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIA 228
+ I+D ED D + + + V A+ SQ+ N A
Sbjct: 193 KYDFIILDPSLLEDKVCDNKLSICFNNHSEMCGVDIEG-CASLSQNLLMNCSNQAASVAI 251
Query: 229 DLIKLQKDVI 238
L+ K I
Sbjct: 252 KLVDKIKSAI 261
>gi|58381777|ref|XP_311461.2| AGAP010483-PA [Anopheles gambiae str. PEST]
gi|55242661|gb|EAA07136.2| AGAP010483-PA [Anopheles gambiae str. PEST]
Length = 303
Score = 73.0 bits (177), Expect = 4e-11, Method: Composition-based stats.
Identities = 32/265 (12%), Positives = 68/265 (25%), Gaps = 25/265 (9%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR GR R + + +A GS ++ +T +L E P G +
Sbjct: 22 MRNDGRTNRDYRPMEFESEIVVHAAGSARLRLANTDILVGVKAEIDTPN-PDRPNEGKVD 80
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRA---LRSVVDLSALGSRQIIIDCD 117
+T R + + + L + ++ ++ +D
Sbjct: 81 FFIDCSANATPEFEGRGGEQLATEISNTLSKAYESQKGFDLAGLCIMAGHQCWKLYVDVL 140
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHME--DCSNKFQLSQVLKGHVAAISCGMLCGYPIV 175
+++ G A AL + + + +L + PI+
Sbjct: 141 ILECGGNLFDAVSLAVKGALFNTRIPRVSTAMHDGGSMDLILTDDPYDCERLDVTTAPIL 200
Query: 176 DLDYGEDSTIDVDAN--------------FVMTDSGHIVEVQG-----SAERATFSQDHF 216
VD + G+ Q ++ + +
Sbjct: 201 VTVCKIGDQCVVDPSAEEEECSVASVAVGVSCRPDGNTTTKQSITTVRTSGEGSIRLETL 260
Query: 217 FAMLNLAKDRIADLIKLQKDVISNE 241
+ A A L K + +
Sbjct: 261 KKCFDTATTVGASLNKALMKALHED 285
>gi|83283957|gb|ABC01886.1| 3'-5'-exoribonuclease/RNA binding protein-like protein [Solanum
tuberosum]
Length = 314
Score = 72.6 bits (176), Expect = 4e-11, Method: Composition-based stats.
Identities = 43/265 (16%), Positives = 84/265 (31%), Gaps = 26/265 (9%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+R R+ R+ +L A+GS L K G T +L +E P G I
Sbjct: 36 VRPDARKLGSARDTTLALGAVASADGSALAKIGSTTMLAAIKMEVMTPTVECP-DEGSIA 94
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGS---RQIIIDCD 117
E+ M P + Q ++ + + +L +G +D
Sbjct: 95 IEFHMPPICSPLVRPGRPAEAASVISKQLSDTILSSGMIDLKELCLVGGKAAWMAYLDIY 154
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGH----------------- 160
+ ADG A+ A A + ++ ++ V +
Sbjct: 155 CLDADGALFDTALLSAVAAFSHLNIPVVSLNDDGRIVLVSEDTVRLKLEKEPVNTEKRKL 214
Query: 161 -----VAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDH 215
+++C + Y + D E+ ++ V+ S +V +
Sbjct: 215 KLNSLPFSLTCILHKNYILADPTAEEEPIMETIVTVVLDSSHQLVSLNKPGGPVLSHTSV 274
Query: 216 FFAMLNLAKDRIADLIKLQKDVISN 240
+ LA+ R +L + + IS+
Sbjct: 275 IQDCIGLARRRAKELQSVLNEAISD 299
>gi|213408869|ref|XP_002175205.1| exosome complex exonuclease RRP43 [Schizosaccharomyces japonicus
yFS275]
gi|212003252|gb|EEB08912.1| exosome complex exonuclease RRP43 [Schizosaccharomyces japonicus
yFS275]
Length = 274
Score = 72.6 bits (176), Expect = 5e-11, Method: Composition-based stats.
Identities = 40/246 (16%), Positives = 77/246 (31%), Gaps = 16/246 (6%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+R GR ++ R + + A+GSC+V+ G++ + E P + GWI
Sbjct: 31 VRPDGRTVSEFRPRVVNTQCISTADGSCIVRAGESVFVCGIKAEIAEPE-LEAPSRGWIV 89
Query: 61 AEYGMLPRSTGNRVKREAVSGRQ---GGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
M P G Q +Q +++ L S+ + + D
Sbjct: 90 PNVEMGPLCNGKFKPGPPRELAQVVSEQMNQVLEQTCLVPLESLCIREKKAAWCLYADIV 149
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHME-----------DCSNKFQLSQVLKGHVAAISC 166
+ DG A AL + + L H+ + S
Sbjct: 150 CLNYDGNAFDCAWKALMHALETTRLPAVVWDEDEERVVCVHDERAKHPLALSSHIESFSW 209
Query: 167 GMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226
+ + D E+S ++ ++G I ++ + L +AK+
Sbjct: 210 TVFGNCVLADPTDDEESLCVERLTIMLDNAGRICKLVKMG-GTHIQKGLLKGCLQIAKEH 268
Query: 227 IADLIK 232
+ L
Sbjct: 269 VLSLTA 274
>gi|213417627|ref|ZP_03350761.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Typhi str. E01-6750]
Length = 196
Score = 72.6 bits (176), Expect = 5e-11, Method: Composition-based stats.
Identities = 31/188 (16%), Positives = 58/188 (30%), Gaps = 24/188 (12%)
Query: 14 ISLTRRV-SKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----HGWITAEYGMLPR 68
++L + ++ A + +V DT + T ++K + T G +P
Sbjct: 26 VTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVNYQERTYAAGRIPG 85
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
S R GR I R+I R +R + + Q+I +
Sbjct: 86 SFFRR------EGRPSEGETLIARLIDRPVRPLFPEGFVNEVQVIATVVSVNPQVNPDIV 139
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+ GA A G + A G + +++ E +D
Sbjct: 140 AMIGASAA-------------LSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLD 186
Query: 189 ANFVMTDS 196
T++
Sbjct: 187 LVVAGTEA 194
>gi|21362905|sp|Q9D0M0|EXOS7_MOUSE RecName: Full=Exosome complex exonuclease RRP42; AltName:
Full=Exosome component 7; AltName: Full=Ribosomal
RNA-processing protein 42
Length = 291
Score = 72.6 bits (176), Expect = 5e-11, Method: Composition-based stats.
Identities = 35/258 (13%), Positives = 73/258 (28%), Gaps = 19/258 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+R+ GR R + + V GS VK G T +L E P + G++
Sbjct: 22 LRVDGRGCEVYRCVEVETDVVSNTSGSARVKLGHTDILVGVKAEMGTPK-LEKPNEGYLE 80
Query: 61 AEYGMLPRSTGN---RVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
+T R + + + LRS+ + +D
Sbjct: 81 FFVDCSANATPEFEGRGGDDLGTEMLTPSTGIFNNKSSVDLRSLCISPREHCWVLYVDVL 140
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMED-------CSNKFQLSQVLKGH-------VAA 163
+++ G A AL + +
Sbjct: 141 LLECGGNLFDAISIAVKAALFNTRIPRVRVLEDEEGAKDIELSDDPYDCIRLSVENVPCI 200
Query: 164 ISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLA 223
++ + +VD E++ +T G + ++ + + + F M+ +
Sbjct: 201 VTLCKIGCRHVVDATLQEEACSLASLLVSVTSKGVVTCMRKVGK-GSLDPESIFEMMESS 259
Query: 224 KDRIADLIKLQKDVISNE 241
K L + ++ E
Sbjct: 260 KRVGKVLHVSLQSLLHKE 277
>gi|195488381|ref|XP_002092290.1| GE11745 [Drosophila yakuba]
gi|194178391|gb|EDW92002.1| GE11745 [Drosophila yakuba]
Length = 296
Score = 72.2 bits (175), Expect = 5e-11, Method: Composition-based stats.
Identities = 36/259 (13%), Positives = 65/259 (25%), Gaps = 22/259 (8%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
R GR R + L + A GS ++ +T +L E VP + G +
Sbjct: 22 FRCDGRSRRDYRPMDLETGLVSNASGSARLRLANTDILVGVKTEIDVPNPL-TPDFGKLE 80
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQII---IDCD 117
+T R Q L + +Q ID
Sbjct: 81 FFVDCSANATPEFEGRGGSDLAQELILSLQNAYESPLAFDYRTLCLIPGQQCWKLYIDIL 140
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMED-------CSNKFQLSQVLKGHVAAIS----- 165
+++ G A A AL + ++ I
Sbjct: 141 ILECGGNLHDAVSLAAKAALFNTKLPRVTATLLDAGITDLIISDNPYDCTRIGIETVPLL 200
Query: 166 ---CGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGH--IVEVQGSAERATFSQDHFFAML 220
C + + E + V +G + + +D L
Sbjct: 201 VTVCKIGDYCLVDPSAEEEVCSTVSVVVSVSMRNGKAFLSGTHLTG-GGAMHRDTMRNCL 259
Query: 221 NLAKDRIADLIKLQKDVIS 239
+L L +L +++
Sbjct: 260 DLGLAIGEHLDRLLTKMLN 278
>gi|225562674|gb|EEH10953.1| exonuclease [Ajellomyces capsulatus G186AR]
Length = 292
Score = 72.2 bits (175), Expect = 6e-11, Method: Composition-based stats.
Identities = 34/263 (12%), Positives = 75/263 (28%), Gaps = 27/263 (10%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE-EKVPMWIRNTKHGWI 59
+RL GR+ N++R + + + GS + G+T ++ E
Sbjct: 14 LRLDGRRWNELRLMQAQISTNPASSGSSYLSMGNTVVICMVHGPAEGRRSEATGPAREGA 73
Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRSQ---EIQRMIGRALRSVVDLSALGSRQIIIDC 116
+ +++ + GG Q ++ + A + + I +
Sbjct: 74 VVSVAVNVAGFSGVDRKKKSATGGGGDRQASTDLAFALRDAFQPHLHTHIYPHSTISLHV 133
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHM------EDCSNKFQLSQVLKGHVAAISCGMLC 170
V+ +DG A I +AL D M + S + + + G+
Sbjct: 134 SVLSSDGSLFAACINACTLALVDAGIPMPGLLCACTVGMSGRASTPAEPELTRVGGGINE 193
Query: 171 GYPIVDLDYGEDSTIDVDANFVMT--------------DSGHIVEVQGSAERATFSQDHF 216
+ + T ++ + VQ A +
Sbjct: 194 SLDPLLDMSMPEEQELPFMTVANTNPAPTGDDSMDDQEENQMLSIVQMGA---GVHISYL 250
Query: 217 FAMLNLAKDRIADLIKLQKDVIS 239
M + D + ++ V+
Sbjct: 251 ETMFAVGLDGCKQVREILNGVVK 273
>gi|308802860|ref|XP_003078743.1| ribonuclease PH (ISS) [Ostreococcus tauri]
gi|116057196|emb|CAL51623.1| ribonuclease PH (ISS) [Ostreococcus tauri]
Length = 693
Score = 72.2 bits (175), Expect = 6e-11, Method: Composition-based stats.
Identities = 38/247 (15%), Positives = 75/247 (30%), Gaps = 23/247 (9%)
Query: 2 RLSGRQENQ-MREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
R GR ++ +R +S+ + A GS V+ G+T + + + G I
Sbjct: 461 RSDGRASDEHLRALSVALDTNSRASGSSYVELGNTKVSCAVYGPRRPRVDDLTVNTGVID 520
Query: 61 AEYGMLPRSTGN-------RVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQII 113
+ +P + R + E+ I LR+ Q+
Sbjct: 521 VDVFRVPFARKRAIHVERGRENEREKDLNRSAADVELSARIADVLRACALTETFPRAQVD 580
Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP 173
+ ++ +DGG A++ A AL M D + +A +
Sbjct: 581 VYVTIMDSDGGEVVASVLAASAALARAGVEMADLA-------------SACELVRIGERL 627
Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
++D E + S VQG ++ D L +
Sbjct: 628 VLDPTEEECERGNGKVFLAQMSSEE-GMVQGE-TFGRWTADESRRALEQCAAGCNRFDTI 685
Query: 234 QKDVISN 240
++ ++
Sbjct: 686 VREALAK 692
>gi|326477645|gb|EGE01655.1| exosome complex endonuclease 1/ribosomal RNA processing protein
[Trichophyton equinum CBS 127.97]
Length = 302
Score = 72.2 bits (175), Expect = 6e-11, Method: Composition-based stats.
Identities = 34/272 (12%), Positives = 74/272 (27%), Gaps = 36/272 (13%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIR-NTKHGWI 59
+RL GR+ N++R + + + GS + G+T +L T + I
Sbjct: 14 LRLDGRRWNELRLLQAQISTNPASSGSSYLSMGNTAVLCTVHGPAEGKRSETAGAAGAVI 73
Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRS--QEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
+ + +R K+ G R E+ + A + + I +
Sbjct: 74 NVVVNLAGFANVDRKKKSTTGSGGGDRQATTELANSLRDAFQPHIHAHLYPRSTISVHVS 133
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC------- 170
V+ +DG A + +AL D M + + A++
Sbjct: 134 VLSSDGSLFAACLNACTLALVDAGIPMPGLLCACTVGMSGRASSPAVTAESAQIGGINES 193
Query: 171 ----------GYPIVDLDYGEDSTIDVDANFV-------------MTDSGHIVEVQGSAE 207
+ ++ D ++ + V +
Sbjct: 194 LDPLLDISAPEEVELPYMTVANTNPMPDITVPKDGEDEEDDEYDAENENQMLSIVHMDS- 252
Query: 208 RATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
+ M + D ++ V+
Sbjct: 253 --GVHVSYLETMFAVGIDGCKQTREILNGVLK 282
>gi|28573444|ref|NP_725517.2| Rrp42 [Drosophila melanogaster]
gi|28380797|gb|AAF58076.3| Rrp42 [Drosophila melanogaster]
gi|85857716|gb|ABC86393.1| IP10364p [Drosophila melanogaster]
Length = 296
Score = 72.2 bits (175), Expect = 6e-11, Method: Composition-based stats.
Identities = 38/259 (14%), Positives = 65/259 (25%), Gaps = 22/259 (8%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
R GR R + L + A GS ++ +T +L E VP + + G +
Sbjct: 22 FRCDGRSRRDYRPMDLETGLVSNASGSARLRLANTDILVGVKTEIDVPNPL-TPEFGKLE 80
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQII---IDCD 117
+T R Q + L + +Q ID
Sbjct: 81 FFVDCSANATPEFEGRGGSDLAQELILSLQNAYESPLAFNYRTLCLIPGQQCWKLYIDIL 140
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSN-------KFQLSQVLKGHVAAISCGMLC 170
+++ G A A AL + + I L
Sbjct: 141 ILECGGNLHDAVSLAAKAALFNTKLPRVTATMLDAGITDLIISDNPYDCTRIGIETVPLL 200
Query: 171 GYPIVDLDY--------GEDSTIDVDANFVMTDSGH--IVEVQGSAERATFSQDHFFAML 220
DY E + V +G + + +D L
Sbjct: 201 VTVCKIGDYVLVDPSAEEEVCSTVSMVVSVSMRNGQAFLSGTHLTG-GGAMHRDTMRNCL 259
Query: 221 NLAKDRIADLIKLQKDVIS 239
L L +L +++
Sbjct: 260 ELGLAIGEHLDRLLTKMLN 278
>gi|297837509|ref|XP_002886636.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297332477|gb|EFH62895.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 302
Score = 72.2 bits (175), Expect = 6e-11, Method: Composition-based stats.
Identities = 48/268 (17%), Positives = 89/268 (33%), Gaps = 33/268 (12%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+R GRQ + R+ + + A+GS L K G T +L +E P + G I
Sbjct: 36 LRPDGRQLGKARDTIVNLGLVSTADGSALAKIGSTTMLAAIRMEVMTPST-DSPDEGCIA 94
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGS---RQIIIDCD 117
E+ M P + + ++ + + +L + +D
Sbjct: 95 LEFHMPPICSPTVRPGRPADAAPVISKRLSDTILSSGMIDLKELCLVSGKAAWMGYLDIY 154
Query: 118 VIQADGGTRTAAITGAWVA-------------------------LHDCLQHMEDCSNKFQ 152
+ ADG AA+ A A + ++ NK +
Sbjct: 155 CLDADGALFDAALLSAVAAFSNLQIPVVALNDNGRIVAITGGKDQDNASITEKEAVNKEK 214
Query: 153 LSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFS 212
LK +++C + Y + D E+S +D V+ S +V S A
Sbjct: 215 RKLTLKNIPFSLTCILHKTYILADPTTEEESIMDTLVTVVLDSSDQMVSFYKSGGTALAY 274
Query: 213 QDHFFAMLNLAKDRIADLIKLQKDVISN 240
+ + LA+ R ++ K ++
Sbjct: 275 SPAIKSCVELARKRAKEV----KQILGE 298
>gi|312372348|gb|EFR20329.1| hypothetical protein AND_20269 [Anopheles darlingi]
Length = 243
Score = 72.2 bits (175), Expect = 7e-11, Method: Composition-based stats.
Identities = 21/126 (16%), Positives = 45/126 (35%), Gaps = 2/126 (1%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+R GR+ ++R + + V + A+GS + K G+T ++ E P + G++
Sbjct: 55 IRPDGRELEELRPTAFSFGVIQSADGSAIAKIGNTTVVCGIKAELAAPKAVEP-NQGYLI 113
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIG-RALRSVVDLSALGSRQIIIDCDVI 119
+ P S+ + Q R + G ++ CD++
Sbjct: 114 PNVEISPVSSPSYRPGPPSEEAQVYSQSLADVFSKARCIDLAQLCVEPGKLVWVLYCDLV 173
Query: 120 QADGGT 125
+
Sbjct: 174 RTIVDP 179
>gi|194882669|ref|XP_001975433.1| GG20559 [Drosophila erecta]
gi|190658620|gb|EDV55833.1| GG20559 [Drosophila erecta]
Length = 296
Score = 72.2 bits (175), Expect = 7e-11, Method: Composition-based stats.
Identities = 36/259 (13%), Positives = 64/259 (24%), Gaps = 22/259 (8%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
R GR R + L + A GS ++ +T +L E VP + + G +
Sbjct: 22 FRCDGRSRRDYRPMDLETGLVSNASGSARLRLANTDILVGVKTEIDVPNPL-TPEFGKLE 80
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQII---IDCD 117
+T R Q L + +Q ID
Sbjct: 81 FFVDCSANATPEFEGRGGSDLAQELILSLQNAYESPLAFDYRTLCLIPGQQCWKLYIDIL 140
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSN-------KFQLSQVLKGHVAAI------ 164
+++ G A A AL + + +I
Sbjct: 141 ILECGGNLHDAVSLAAKAALFNTKLPRVTATMLDAGITDLIISDNPYDCTRISIETVPLL 200
Query: 165 --SCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGH--IVEVQGSAERATFSQDHFFAML 220
C + + E + V G + + +D L
Sbjct: 201 VTVCKVGDYCLVDPSAEEEVCSTVSVVVSVSMRDGQAFLSGTHLTG-GGAMHRDTMRNCL 259
Query: 221 NLAKDRIADLIKLQKDVIS 239
L L +L +++
Sbjct: 260 ELGLAIGEHLDRLLTKMLN 278
>gi|302502983|ref|XP_003013452.1| hypothetical protein ARB_00270 [Arthroderma benhamiae CBS 112371]
gi|291177016|gb|EFE32812.1| hypothetical protein ARB_00270 [Arthroderma benhamiae CBS 112371]
Length = 302
Score = 71.8 bits (174), Expect = 7e-11, Method: Composition-based stats.
Identities = 35/272 (12%), Positives = 76/272 (27%), Gaps = 36/272 (13%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIR-NTKHGWI 59
+RL GR+ N++R + + + GS + G+T +L T + I
Sbjct: 14 LRLDGRRWNELRLLQAQISTNPASSGSSYLSMGNTAVLCTVHGPAEGKRSETAGAAGAVI 73
Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRS--QEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
+ + +R K+ A G R E+ ++ A + + I +
Sbjct: 74 NVVVNLAGFANVDRKKKSAAGSGGGDRQATTELATLLRDAFQPHIHAHLYPRSTISVHVS 133
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC------- 170
V+ +DG A + +AL D M + + A++
Sbjct: 134 VLSSDGSLFAACLNACTLALVDAGIPMPGLLCACTVGMSGRASTPAVTAESAQIGGINES 193
Query: 171 ----------GYPIVDLDYGEDSTIDVDANFV-------------MTDSGHIVEVQGSAE 207
+ ++ D ++ + V +
Sbjct: 194 LDPLLDISAPEEVELPYMTVANTNPMPDITVPKDEEDEEDDDYDAENENQMLSIVHMDS- 252
Query: 208 RATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
+ M + D ++ V+
Sbjct: 253 --GVHVSYLETMFAVGIDGCKQTREILNGVLK 282
>gi|297847232|ref|XP_002891497.1| hypothetical protein ARALYDRAFT_891796 [Arabidopsis lyrata subsp.
lyrata]
gi|297337339|gb|EFH67756.1| hypothetical protein ARALYDRAFT_891796 [Arabidopsis lyrata subsp.
lyrata]
Length = 159
Score = 71.8 bits (174), Expect = 7e-11, Method: Composition-based stats.
Identities = 21/117 (17%), Positives = 37/117 (31%), Gaps = 2/117 (1%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R GR +Q+R ++ +R + GS GDT +L + P +N
Sbjct: 28 REDGRTPDQLRPLACSRNILHRPHGSASWSQGDTKVLAAVYGPK--PGTRKNENPEKACF 85
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDV 118
E P+S +S G S + + +V + +
Sbjct: 86 EVIWKPKSGQIVFPNTTLSVLPEGSSLVEGEPVEDGIIKLVTHGVMSVDDYFWCVEN 142
>gi|302667165|ref|XP_003025173.1| hypothetical protein TRV_00655 [Trichophyton verrucosum HKI 0517]
gi|291189263|gb|EFE44562.1| hypothetical protein TRV_00655 [Trichophyton verrucosum HKI 0517]
Length = 302
Score = 71.8 bits (174), Expect = 8e-11, Method: Composition-based stats.
Identities = 35/272 (12%), Positives = 76/272 (27%), Gaps = 36/272 (13%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIR-NTKHGWI 59
+RL GR+ N++R + + + GS + G+T +L T + I
Sbjct: 14 LRLDGRRWNELRLLQAQISTNPASSGSSYLSMGNTAVLCTVHGPAEGKRSETAGAAGAVI 73
Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRS--QEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
+ + +R K+ A G R E+ ++ A + + I +
Sbjct: 74 NVVVNLAGFANVDRKKKSATGSGGGDRQATTELATLLRDAFQPHIHAHLYPRSTISVHVS 133
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC------- 170
V+ +DG A + +AL D M + + A++
Sbjct: 134 VLSSDGSLFAACLNACTLALVDAGIPMPGLLCACTVGMSGRASTPAVTAESAQIGEINES 193
Query: 171 ----------GYPIVDLDYGEDSTIDVDANFV-------------MTDSGHIVEVQGSAE 207
+ ++ D ++ + V +
Sbjct: 194 LDPLLDISAPEEVELPYMTVANTNPMPDITVPKDEEDEEEDDYDAENENQMLSIVHMDS- 252
Query: 208 RATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
+ M + D ++ V+
Sbjct: 253 --GVHVSYLETMFAVGIDGCKQTREILNGVLK 282
>gi|326428882|gb|EGD74452.1| hypothetical protein PTSG_05816 [Salpingoeca sp. ATCC 50818]
Length = 280
Score = 71.8 bits (174), Expect = 8e-11, Method: Composition-based stats.
Identities = 34/253 (13%), Positives = 72/253 (28%), Gaps = 20/253 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+RL GR +++MR + +T + G G+T + + V G++
Sbjct: 28 VRLDGRGKSEMRRVLVTLG--RQQYGQATASIGNTQAICRVSCSI-VRPHEDRPTKGFVR 84
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIG--RALRSVVDLSALGSRQIIIDCDV 118
+ P ++ + S ++ ++ + RAL G + + +V
Sbjct: 85 YGVTLSPMASPDYDAGGRPSAASIYLTRLLEHIFREARALDDESLCIVAGEKVWAVSVNV 144
Query: 119 IQADGGTRTAA--ITGAWVALHDCLQHMEDC-SNKFQLSQVLKGHVAAISCGMLCGYPI- 174
+ A L + + + +++
Sbjct: 145 TVTNDDGNMEDACALAALAGLMHFRRPYVSIAGQDVVVHPFDEHEPVSLAINHRPLNVTT 204
Query: 175 ----------VDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAK 224
VD E D + M G I + S+E + A++ K
Sbjct: 205 ALFDNGDLALVDPTKIELKVADGSISVAMNTHGEICGIN-SSEGLAVDPEQMEAIVAATK 263
Query: 225 DRIADLIKLQKDV 237
R+ L
Sbjct: 264 HRVTHLFTALNKA 276
>gi|46202937|ref|ZP_00052357.2| COG1185: Polyribonucleotide nucleotidyltransferase (polynucleotide
phosphorylase) [Magnetospirillum magnetotacticum MS-1]
Length = 218
Score = 71.8 bits (174), Expect = 8e-11, Method: Composition-based stats.
Identities = 29/156 (18%), Positives = 61/156 (39%), Gaps = 10/156 (6%)
Query: 83 QGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVALHDCLQ 142
G R ++ RA+R V+ + I + ++ +++G + A++ G ++L D
Sbjct: 4 PGRREIGHGKLAWRAIRPVLPAAHEFPYTIRVVSEITESNGSSSMASVCGGSLSLMDAGV 63
Query: 143 HMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEV 202
+ + +L+G A+ + ED D+D T+ G I +
Sbjct: 64 PLRRPVAGIAMGLILEGERFAVLSD---------ILGDEDHLGDMDFKVAGTEEG-ITSL 113
Query: 203 QGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
Q + A +++ L AKD A ++ +
Sbjct: 114 QMDIKIAGITEEIMKVALAQAKDGRAHILGEMAQDL 149
>gi|311262607|ref|XP_003129265.1| PREDICTED: exosome complex exonuclease RRP45-like [Sus scrofa]
Length = 414
Score = 71.8 bits (174), Expect = 8e-11, Method: Composition-based stats.
Identities = 46/272 (16%), Positives = 77/272 (28%), Gaps = 39/272 (14%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
RL GRQ R I ++ G C+V+ G T +L + E V + G +
Sbjct: 23 RLDGRQTYDYRNIKISFGTD---YGCCIVELGKTRVLGQVSCEL-VSPKLNRATEGILFF 78
Query: 62 EYGMLPRSTGNRVKREAVS-----GRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
+ + R R + I VV + QI +D
Sbjct: 79 NLELSQMAAPAFEPGRQSDLLVKLNRLLERCLRNSKCIDTESLCVVAGEKV--WQIRVDL 136
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHME------------------------DCSNKFQ 152
++ DG AA A VAL +
Sbjct: 137 HLLNHDGNIIDAASIAAIVALCHFRRPDVSVQGDEVTLPQTGNYPNVHQLVSGKTECGIP 196
Query: 153 LSQVL---KGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERA 209
K Y +VD + E+ +D M I +Q S
Sbjct: 197 NYLAKYSSKKDQTTDVVYTARTYLLVDPNEREERVMDGLLVIAMNKHREICTIQSSGGIM 256
Query: 210 TFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
+D +A ++ ++ +L + + N+
Sbjct: 257 LL-KDQVLRCSKIAGVKVLEITELIQKALEND 287
>gi|297739657|emb|CBI29839.3| unnamed protein product [Vitis vinifera]
Length = 311
Score = 71.8 bits (174), Expect = 9e-11, Method: Composition-based stats.
Identities = 46/273 (16%), Positives = 82/273 (30%), Gaps = 34/273 (12%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+R R + R+ SL A+GS L K G T +L +E P + G I
Sbjct: 36 IRPDARPLGRARDTSLALGAVASADGSALAKIGCTTMLAAVKMEVMTPP-KESPDEGSIA 94
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGS----------- 109
E+ M P + Q ++ +
Sbjct: 95 IEFYMPPICSPLVRPGRPAEEAPVVSKQLSDTILRHVNVVTSFSGMINLKELSLVSGKAA 154
Query: 110 RQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHME----------------------DC 147
+D + ADG AA+ A A + +
Sbjct: 155 WMAYLDIYCLDADGSLFDAALLAAVAAFSHLRIPVVSLNEEGRVVVVSEENEEGKSEKEP 214
Query: 148 SNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAE 207
NK + L +++C + Y + D E+S ++ V+ SG +V +
Sbjct: 215 VNKGKRKLTLSSLPFSLTCILHKNYILADPTAEEESIMETLVTVVLDSSGQLVSLYKPGG 274
Query: 208 RATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
+ L + R+ +L + + IS+
Sbjct: 275 PVLAYASAVQDCIALTRQRVKELKSILNEAISD 307
>gi|239790360|dbj|BAH71746.1| ACYPI003501 [Acyrthosiphon pisum]
Length = 267
Score = 71.4 bits (173), Expect = 9e-11, Method: Composition-based stats.
Identities = 36/247 (14%), Positives = 72/247 (29%), Gaps = 13/247 (5%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R GR+ R+ SL A+GS +VK G+T ++ E VP G++
Sbjct: 22 RNDGRELMNFRDASLNLNTIHTADGSAVVKIGNTAVVCGIKAELGVPKA-EAPDIGYLLV 80
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRA---LRSVVDLSALGSRQIIIDCDV 118
+ + S + L+ + + D
Sbjct: 81 NIELPSLCSKKIRPGIPCDEAMQMTSFLNEVCNNCKILDLQQLCISVDKLVWVLSCDIYC 140
Query: 119 IQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGH--------VAAISCGMLC 170
+ DG A + AL + + + V++ + + + G+
Sbjct: 141 LNYDGSVLDACLIALLSALQTVKIPEVKYDKETEETTVIENYIPLKVNSLPVSSTFGVFN 200
Query: 171 GYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADL 230
I+ E+ + V V+T+ I + + +R +
Sbjct: 201 EKYILADPTEEEEQLCVSKLTVVTNGSLIFSLHKPG-GEFIKDSQIQNCIKHVNNRAKTI 259
Query: 231 IKLQKDV 237
+L K
Sbjct: 260 CQLIKAA 266
>gi|225710860|gb|ACO11276.1| Exosome complex exonuclease RRP45 [Caligus rogercresseyi]
Length = 364
Score = 71.4 bits (173), Expect = 1e-10, Method: Composition-based stats.
Identities = 35/250 (14%), Positives = 77/250 (30%), Gaps = 18/250 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
RL GR+ ++ R+I++ G+ V+ GDT +L + + P +R + T
Sbjct: 20 RLDGRKLDERRDINIHLG---REWGTAEVRLGDTRVLASTSCSVGEPRSVRPNEGILKTH 76
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
+ RS R R + + + + S+ S I ++ ++
Sbjct: 77 IEPLSKRSISTET--LVELNRVIERVLKESKCVD--MESLCISSEEKVWIISLEMTLLND 132
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVL----------KGHVAAISCGMLCG 171
G A AL + H + +
Sbjct: 133 AGNAADCASIAGLAALCHFKRPDVTLKGDKIRIHPFYERDPVSLAIHHHPVLSTFALYGR 192
Query: 172 YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231
++D E+ +D M I + + + + + + A + ++
Sbjct: 193 VALLDPSKEEEIVMDGKVVLGMNPYREICALHLAGQ-KLVDKTLVLQLASKAAEESKRIV 251
Query: 232 KLQKDVISNE 241
K+ +S +
Sbjct: 252 DQLKNALSRD 261
>gi|219130014|ref|XP_002185170.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217403349|gb|EEC43302.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 140
Score = 71.4 bits (173), Expect = 1e-10, Method: Composition-based stats.
Identities = 31/144 (21%), Positives = 49/144 (34%), Gaps = 14/144 (9%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R GR + +R +S A+GS L K G T +L P ++ +
Sbjct: 3 RADGRLASTLRPLSCELGTLHNADGSALWKSGSTQVLAAVHGPV-APRQPQHETQKAKIS 61
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
+ +E + I +AL + + I I ++ A
Sbjct: 62 IIIKSGTTVNT-------------LEREWEAFITKALTACLVTEQYPRSVIQIVLQILSA 108
Query: 122 DGGTRTAAITGAWVALHDCLQHME 145
DG AA+ GA AL D M+
Sbjct: 109 DGSVLGAALNGAVAALMDAGIAMK 132
>gi|66801297|ref|XP_629574.1| hypothetical protein DDB_G0292692 [Dictyostelium discoideum AX4]
gi|60462952|gb|EAL61149.1| hypothetical protein DDB_G0292692 [Dictyostelium discoideum AX4]
Length = 293
Score = 71.4 bits (173), Expect = 1e-10, Method: Composition-based stats.
Identities = 37/254 (14%), Positives = 77/254 (30%), Gaps = 21/254 (8%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRN------- 53
+R GR + +R+ +++ A+GS VK G T ++ E I
Sbjct: 21 VRPDGRSLDDIRKTTISTGSITTADGSSFVKIGSTSVVCGVRAEVGEKPSIDKSKFSTLN 80
Query: 54 -TKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGS--- 109
++ I + P + + S+ + +
Sbjct: 81 VHENKNIFINIELGPICSNTFSSSKPSDIAMSLCSRLNSLINRLEIPETDYYFDEEGKAL 140
Query: 110 RQIIIDCDVIQADGGTRTAAITGAWVALHDCLQH---------MEDCSNKFQLSQVLKGH 160
+ +D + DG AA+ AL + Q ++ +
Sbjct: 141 WYLYVDVYCLDYDGNIYDAAVLSIISALKNVKLPKGIIENNDEFYKDLESPQRKLNIQHY 200
Query: 161 VAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAML 220
+ +S ++ Y + D E+ N + I + S + S+ + +
Sbjct: 201 LIPLSFSVIDDYILADPSLDEEKLSSGTINITYNELNEICLLLSSGT-SLISKTNLKTCM 259
Query: 221 NLAKDRIADLIKLQ 234
AK+R +I L
Sbjct: 260 EKAKERSTFIIDLI 273
>gi|73969676|ref|XP_865517.1| PREDICTED: similar to polyribonucleotide nucleotidyltransferase 1
isoform 3 [Canis familiaris]
Length = 367
Score = 71.4 bits (173), Expect = 1e-10, Method: Composition-based stats.
Identities = 13/43 (30%), Positives = 19/43 (44%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE 44
R GR +R I+ + K GS L + G T + T T +
Sbjct: 278 RCDGRDLTSLRNINCEVDLFKTLHGSALFQRGQTQVFCTVTFD 320
Score = 43.7 bits (101), Expect = 0.021, Method: Composition-based stats.
Identities = 33/191 (17%), Positives = 58/191 (30%), Gaps = 24/191 (12%)
Query: 38 LTTA---TLEEKVPMWIRNTKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMI 94
+ TA T + A G +P + R + R+I
Sbjct: 1 MVTAVSKTKPSPSQFMPLVVDYRQKAAAAGRIPTNYLRR------EVGSSDKEVLTSRVI 54
Query: 95 GRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLS 154
R++R + Q++ + + AI GA VA
Sbjct: 55 DRSIRPLFPAGYFYDTQVLCNLLAVDGVNEPDVLAINGASVA-------------LSLSD 101
Query: 155 QVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQD 214
G + A+ GM+ G +V+ E S+ ++ IV ++ SAE Q
Sbjct: 102 IPWNGPIGAVRIGMIDGECVVNPTRKEMSSSTLNLVVAGAPKSQIVMMEASAEN--ILQQ 159
Query: 215 HFFAMLNLAKD 225
F + +
Sbjct: 160 DFCHAIKVGVK 170
>gi|328875787|gb|EGG24151.1| hypothetical protein DFA_06297 [Dictyostelium fasciculatum]
Length = 329
Score = 71.4 bits (173), Expect = 1e-10, Method: Composition-based stats.
Identities = 37/241 (15%), Positives = 73/241 (30%), Gaps = 27/241 (11%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R R NQ+R I + + A+GS G + +L V +
Sbjct: 85 RDDTRLSNQIRPIESEQALLNKADGSAKFSQGKSSVLAAVYGPIDVKTARKEKISK-SVV 143
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
+ P + +E + ++ A+ S++ QI + V
Sbjct: 144 DVSFTPATGNT-----------TYFDKEREMLVRNAVESIILTLLHPRTQINVIVQVYSN 192
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
DG + AI +AL D + ++ +D E
Sbjct: 193 DGSIISCAINACCLALLDAGI--------ELNCLISSITLSFT----HDNQIYLDPTQKE 240
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
++ A + + IV + + + +F LN+AK + + + N
Sbjct: 241 ENNSKGLAVYAINSKSEIVMTKTTGIIG---ESLYFQGLNIAKQSCEKVSAYTRLAVRNR 297
Query: 242 V 242
+
Sbjct: 298 I 298
>gi|114595916|ref|XP_001153907.1| PREDICTED: similar to exosome component 9 isoform 2 [Pan
troglodytes]
Length = 341
Score = 71.4 bits (173), Expect = 1e-10, Method: Composition-based stats.
Identities = 36/241 (14%), Positives = 70/241 (29%), Gaps = 38/241 (15%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
RL GRQ R I ++ G C+V+ G T +L + E V + G +
Sbjct: 23 RLDGRQTYDYRNIRISFGTD---YGCCIVELGKTRVLGQVSCEL-VSPKLNRATEGILFF 78
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
+ + GRQ ++ R++ R LR+ +
Sbjct: 79 NLELSQMAAPAFEP-----GRQSDLLVKLNRLLERCLRNSKCID---------------- 117
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIV-DLDYG 180
+ + + G ++ D +
Sbjct: 118 -----------TESLCVVAGEKYTPEERDPVPLSIHHMPICVSFAFFQQGTYLLVDPNER 166
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
E+ +D M I +Q S +D +A ++A++ +L + N
Sbjct: 167 EERVMDGLLVIAMNKHREICTIQSSGGIMLL-KDQVLRCSKIAGVKVAEITELILKALEN 225
Query: 241 E 241
+
Sbjct: 226 D 226
>gi|303286137|ref|XP_003062358.1| 3' exoribonuclease [Micromonas pusilla CCMP1545]
gi|226455875|gb|EEH53177.1| 3' exoribonuclease [Micromonas pusilla CCMP1545]
Length = 301
Score = 71.0 bits (172), Expect = 1e-10, Method: Composition-based stats.
Identities = 54/275 (19%), Positives = 89/275 (32%), Gaps = 50/275 (18%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R GR + R++S+ V A+GS LVK G T L A L E P G +
Sbjct: 24 RPDGRPLARARDVSVANGVVTSADGSALVKIGRTTALAAAKL-EPAPPEPTAPDVGVVEV 82
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSAL--------GSRQII 113
+ P + GR SQ R I LR + + ++
Sbjct: 83 TVELPPMCAASARP-----GRPTEESQRCARRIEDVLRDANVVDLRKLCIKRGVYAWRVC 137
Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQ------------------ 155
+D V+ DGG AA+ AL D D ++ +L
Sbjct: 138 VDVYVLDHDGGILDAALCAVVGALKDAKVPRVDVDDRGKLVWGGGERERRPGDADADADA 197
Query: 156 ---------------VLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIV 200
+ H +++ G G +VD ++ E++ ++ + VM + G +V
Sbjct: 198 NGDGDASTSAAACVVDVASHPLSLTIGQYDGKLVVDPNFEEEALMESVVSVVMREDGDLV 257
Query: 201 EVQGSAERATFSQDHFFAMLNLAK---DRIADLIK 232
V S+ + A+
Sbjct: 258 CVSKPGGTREASESTLIKCIAAARLRYPGCKKAFD 292
>gi|125539848|gb|EAY86243.1| hypothetical protein OsI_07612 [Oryza sativa Indica Group]
Length = 408
Score = 71.0 bits (172), Expect = 1e-10, Method: Composition-based stats.
Identities = 39/276 (14%), Positives = 83/276 (30%), Gaps = 46/276 (16%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+R+ GR+ R + + +GS V+ GDT ++ AT + V + G +
Sbjct: 25 LRVDGRRPFDFRRLKILFG---REDGSAEVQLGDTRVMGYATAQL-VQPYKDRPNEGTLA 80
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSA--------LGSRQI 112
P + GR G + E+ R++ R LR + +
Sbjct: 81 IFTEFSPMADPAFEP-----GRPGESAIELGRVVDRGLRESRAVDMESLCVVAGKHVWSV 135
Query: 113 IIDCDVIQADGGTRTAAIT--------------------------GAWVALHDCLQHMED 146
+D ++ G + D
Sbjct: 136 RVDLHILDNGGELNVPDAMVLSLRNLIDAANIAALAALSTFRRPECTVGGEDGQQVTVHD 195
Query: 147 CSNKFQLSQVLKGHVAAISCGML--CGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQG 204
+ L + A++ ++D Y E++ + + +G + +Q
Sbjct: 196 PEVRDPLPLTIHHLPIAVTFAYFGEGNIMVIDPTYKEEAVMGGRMTATINSNGDVCSIQK 255
Query: 205 SAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
+ S L +A + AD+ K+ +++
Sbjct: 256 AGGEGVMS-SVIMQCLRIASVKAADITSKIKNEVNS 290
>gi|195121612|ref|XP_002005314.1| GI19145 [Drosophila mojavensis]
gi|193910382|gb|EDW09249.1| GI19145 [Drosophila mojavensis]
Length = 296
Score = 71.0 bits (172), Expect = 1e-10, Method: Composition-based stats.
Identities = 35/259 (13%), Positives = 69/259 (26%), Gaps = 22/259 (8%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
R GR R + L + A GS ++ +T +L E VP + + G +
Sbjct: 22 FRCDGRSRRDYRPMELETGLVSNASGSARLRLANTDILVGVKTEIDVPNPL-TPEFGKLE 80
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQII---IDCD 117
+T R Q L + +Q ID
Sbjct: 81 FFVDCSANATPEFEGRGGSDLAQELILSLQNAYESPYAFDYRTLCLIPGQQCWKLYIDIL 140
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMED-------CSNKFQLSQVLKGHVAA------- 163
+++ G A A AL++ ++
Sbjct: 141 ILECGGNLHDAVSLAAKAALYNTKLPRVTATLLDAGVTDLIISDNPYDCTRIGIDAVPLL 200
Query: 164 ISCGMLCGYPIVDLDYGEDSTIDVDANFVM---TDSGHIVEVQGSAERATFSQDHFFAML 220
++ + Y +VD E+ V + + ++ + + +D +
Sbjct: 201 VTVCKIGDYCLVDPTAEEEVCSTVSMVVSVSMRNNEAYLSGTHMTG-GGSMHRDTMLNSI 259
Query: 221 NLAKDRIADLIKLQKDVIS 239
L L L ++
Sbjct: 260 QLGLSMGEQLNNLLVTMLK 278
>gi|73993247|ref|XP_857268.1| PREDICTED: similar to Exosome complex exonuclease RRP43 (Ribosomal
RNA processing protein 43) (Exosome component 8) (p9)
(Opa-interacting protein 2) isoform 2 [Canis familiaris]
Length = 200
Score = 71.0 bits (172), Expect = 1e-10, Method: Composition-based stats.
Identities = 25/157 (15%), Positives = 50/157 (31%), Gaps = 2/157 (1%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R GR+ + R ++ A+GS LVK G+T ++ E P G++
Sbjct: 23 RPDGRELGEFRTTTVNIGSISTADGSALVKLGNTTVICGIKAEFAAPPT-DAPDKGYVVP 81
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
+ P + +R + SQ I +I + + + ++
Sbjct: 82 NVDLPPLCS-SRFRSGPPGEEAQVASQFIADVIENSQIIQKEDLCISPGKLSWVLYCDII 140
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLK 158
+ AL L++ +L +
Sbjct: 141 CLDYDGNILDACTFALLAALKNGGSGLTGAKLQDCMS 177
>gi|167537032|ref|XP_001750186.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163771348|gb|EDQ85016.1| predicted protein [Monosiga brevicollis MX1]
Length = 1336
Score = 71.0 bits (172), Expect = 1e-10, Method: Composition-based stats.
Identities = 37/142 (26%), Positives = 57/142 (40%), Gaps = 5/142 (3%)
Query: 9 NQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVP-MWIRNTKHGWITAEYGMLP 67
+++R + V + A+GS V+ G+T +L + H ++ E+
Sbjct: 38 DELRSVKAKLGVFEQADGSAYVEQGNTKVLAIINGPHDSDARGPNASGHLTVSCEFIYAS 97
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
ST R R + E I R L SVV L I ++ V+QADGG
Sbjct: 98 FSTDQRR----ARSRLDRKLAEQGTRIARTLESVVMGQLLSRSTINLNVQVLQADGGVLA 153
Query: 128 AAITGAWVALHDCLQHMEDCSN 149
AI A +A+ D M+D
Sbjct: 154 TAINAASLAMMDAGVPMKDFLC 175
>gi|195583790|ref|XP_002081699.1| GD11151 [Drosophila simulans]
gi|194193708|gb|EDX07284.1| GD11151 [Drosophila simulans]
Length = 281
Score = 71.0 bits (172), Expect = 1e-10, Method: Composition-based stats.
Identities = 38/259 (14%), Positives = 65/259 (25%), Gaps = 22/259 (8%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
R GR R + L + A GS ++ +T +L E VP + + G +
Sbjct: 7 FRCDGRSRRDYRPMDLETGLVSNASGSARLRLANTDILVGVKTEIDVPNPL-TPEFGKLE 65
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQII---IDCD 117
+T R Q + L + +Q ID
Sbjct: 66 FFVDCSANATPEFEGRGGSDLAQELILSLKNAYESPLAFNYRTLCLIPGQQCWKLYIDIL 125
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSN-------KFQLSQVLKGHVAAISCGMLC 170
+++ G A A AL + + I L
Sbjct: 126 ILECGGNLHDAVSLAAKAALFNTKLPRVTATMLDAGITDLIISDNPYDCTRIGIETVPLL 185
Query: 171 GYPIVDLDY--------GEDSTIDVDANFVMTDSGH--IVEVQGSAERATFSQDHFFAML 220
DY E + V +G + + +D L
Sbjct: 186 VTVCKIGDYVLVDPSAEEEVCSTVSMVVSVSMRNGQAFLSGTHLTG-GGAMHRDTMRNCL 244
Query: 221 NLAKDRIADLIKLQKDVIS 239
L L +L +++
Sbjct: 245 ELGLAIGEQLDRLLTKMLN 263
>gi|119625654|gb|EAX05249.1| exosome component 9, isoform CRA_c [Homo sapiens]
Length = 377
Score = 70.6 bits (171), Expect = 2e-10, Method: Composition-based stats.
Identities = 36/241 (14%), Positives = 70/241 (29%), Gaps = 38/241 (15%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
RL GRQ R I ++ G C+V+ G T +L + E V + G +
Sbjct: 7 RLDGRQTYDYRNIRISFGTD---YGCCIVELGKTRVLGQVSCEL-VSPKLNRATEGILFF 62
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
+ + GRQ ++ R++ R LR+ +
Sbjct: 63 NLELSQMAAPAFEP-----GRQSDLLVKLNRLMERCLRNSKCID---------------- 101
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIV-DLDYG 180
+ + + G ++ D +
Sbjct: 102 -----------TESLCVVAGEKYTPEERDPVPLSIHHMPICVSFAFFQQGTYLLVDPNER 150
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
E+ +D M I +Q S +D +A ++A++ +L + N
Sbjct: 151 EERVMDGLLVIAMNKHREICTIQSSGGIMLL-KDQVLRCSKIAGVKVAEITELILKALEN 209
Query: 241 E 241
+
Sbjct: 210 D 210
>gi|195029661|ref|XP_001987690.1| GH22060 [Drosophila grimshawi]
gi|193903690|gb|EDW02557.1| GH22060 [Drosophila grimshawi]
Length = 296
Score = 70.6 bits (171), Expect = 2e-10, Method: Composition-based stats.
Identities = 35/261 (13%), Positives = 70/261 (26%), Gaps = 22/261 (8%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
R GR R + L + A GS ++ +T +L E VP + + G +
Sbjct: 22 FRCDGRSRRDYRPMELETGLVSNASGSARLRLANTDILVGVKTEIDVPNPL-TPEFGKLE 80
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQII---IDCD 117
+T R Q L + +Q ID
Sbjct: 81 FFVDCSANATPEFEGRGGSDLAQELILSLQNAYESPFAFDYRTLCLIPGQQCWKLYIDIL 140
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMED-------CSNKFQLSQVLKGHVAA------- 163
+++ G A A AL + ++
Sbjct: 141 ILECGGNLHDAVSLAAKAALFNTKLPRVTATLMDAGITDLIISDNPYDCTRIGIDAVPLL 200
Query: 164 ISCGMLCGYPIVDLDYGEDSTIDVDANFVM---TDSGHIVEVQGSAERATFSQDHFFAML 220
++ + + +VD E+ V + + ++ + + +D + +
Sbjct: 201 VTVCKIGDFCLVDPSAEEEVCSTVSMVVSVSMRNNEAYLAGTHLTG-GGSMHRDTMLSSI 259
Query: 221 NLAKDRIADLIKLQKDVISNE 241
L L L ++ E
Sbjct: 260 QLGVSIGEQLNSLLVKMLKAE 280
>gi|326435509|gb|EGD81079.1| hypothetical protein PTSG_11024 [Salpingoeca sp. ATCC 50818]
Length = 255
Score = 70.6 bits (171), Expect = 2e-10, Method: Composition-based stats.
Identities = 37/222 (16%), Positives = 63/222 (28%), Gaps = 18/222 (8%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+R GR R ++ ++GSCLV G T ++ LE + N GWI
Sbjct: 27 VRPDGRSREDPRPCAIAPGTITSSDGSCLVTLGKTSVVCGIKLE-FADPPLDNDNVGWIV 85
Query: 61 AEYGMLPRSTGNRVKREAVSGRQG-GRSQEIQRMIGRALRSVVDLSALGS--RQIIIDCD 117
+ P + + Q L G + +D
Sbjct: 86 PTVTLPPLCSDRFTPGPPPAEAQRLSEFITDIFCSDTMLDKHDLCIIPGKLSWALYLDIQ 145
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQL-------------SQVLKGHVAAI 164
+ DG A + A AL + + + LK V +
Sbjct: 146 CVNYDGNVVDACVLAAMAALQSVTLPKVELPSDLSDLEGLPSIDRSAGHALNLKRTVTSC 205
Query: 165 SCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSA 206
+ + + D E+ V+ D+G I +
Sbjct: 206 TFAV-LDDVLTDPCLEEEDLCSASMTVVVDDAGSICSMCSPG 246
>gi|325182492|emb|CCA16947.1| conserved hypothetical protein [Albugo laibachii Nc14]
Length = 251
Score = 70.6 bits (171), Expect = 2e-10, Method: Composition-based stats.
Identities = 33/240 (13%), Positives = 73/240 (30%), Gaps = 7/240 (2%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVP-MWIRNTKHGWI 59
+R GR N++R+IS + A+GS + FGDT +L + I
Sbjct: 5 LRDDGRNCNELRQISSEQGTLHRADGSSNLTFGDTTVLVAVYGPGQAKIARNELVDKAAI 64
Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119
+ + K + R+ ++ R + S+V + I
Sbjct: 65 DVCVRLNQGIAAAKEKEMELIVRRLYEPIIQRQEFPRTVISIVIQIIEDAGSISSLLTSH 124
Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179
G+ + + L + + + +L + C G ++D
Sbjct: 125 TIGFGSCVEFLDRLCLYLVSAVINAVTMALMDAEIAMLGVVTSTTCCLTEDGSVLLDPSQ 184
Query: 180 GEDSTIDVDANFVMT---DSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
E++ + G ++ + + S++ F+ K + +
Sbjct: 185 KEEAECISLVICASSFQLAEGGVLFL---SSEGPLSEEQLFSCAEACKRGSKCVETFIRQ 241
>gi|119625655|gb|EAX05250.1| exosome component 9, isoform CRA_d [Homo sapiens]
Length = 393
Score = 70.6 bits (171), Expect = 2e-10, Method: Composition-based stats.
Identities = 36/241 (14%), Positives = 70/241 (29%), Gaps = 38/241 (15%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
RL GRQ R I ++ G C+V+ G T +L + E V + G +
Sbjct: 23 RLDGRQTYDYRNIRISFGTD---YGCCIVELGKTRVLGQVSCEL-VSPKLNRATEGILFF 78
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
+ + GRQ ++ R++ R LR+ +
Sbjct: 79 NLELSQMAAPAFEP-----GRQSDLLVKLNRLMERCLRNSKCID---------------- 117
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIV-DLDYG 180
+ + + G ++ D +
Sbjct: 118 -----------TESLCVVAGEKYTPEERDPVPLSIHHMPICVSFAFFQQGTYLLVDPNER 166
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
E+ +D M I +Q S +D +A ++A++ +L + N
Sbjct: 167 EERVMDGLLVIAMNKHREICTIQSSGGIMLL-KDQVLRCSKIAGVKVAEITELILKALEN 225
Query: 241 E 241
+
Sbjct: 226 D 226
>gi|1628372|emb|CAA67158.1| polynucleotide phosphorylase [Dichelobacter nodosus]
Length = 251
Score = 70.6 bits (171), Expect = 2e-10, Method: Composition-based stats.
Identities = 17/115 (14%), Positives = 44/115 (38%), Gaps = 10/115 (8%)
Query: 125 TRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDST 184
+ A++ G+ +AL D ++ + + +G AI + ED
Sbjct: 1 SSMASVCGSSLALMDAGVPVQTPVAGIAMGLIKEGDEFAILTD---------ILGDEDHL 51
Query: 185 IDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
D+D + +G + +Q + +++ L+ A + ++++ I+
Sbjct: 52 GDMDFKVAGSATG-VTALQMDIKINGITEEIMRQALSQAHEGRLHILEVMNQAIA 105
>gi|225719528|gb|ACO15610.1| Exosome complex exonuclease MTR3 [Caligus clemensi]
Length = 274
Score = 70.6 bits (171), Expect = 2e-10, Method: Composition-based stats.
Identities = 38/228 (16%), Positives = 74/228 (32%), Gaps = 13/228 (5%)
Query: 2 RLSG-RQENQ-MREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRN-TKHGW 58
R G R ++ +R + V +GS ++ G T ++ + +V + + G
Sbjct: 40 RPDGERDKDSSVRPLFCEVGVLTQCKGSAYIERGRTKVIASVFGPREVNKKLDFSSTTGI 99
Query: 59 ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDV 118
++ EY P S+ + + + + + RS V L +I I V
Sbjct: 100 LSVEYCETPFSSSSSNRSSKSPSNEDKNISLF---LAQTFRSTVCLHLYPKSRIDIFITV 156
Query: 119 IQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLD 178
++ DG AIT +AL D ++ D + K + V
Sbjct: 157 LENDGSAIPTAITAGALALSDASINLFDLVIGASV----KMSLGKALIDPCKAEEEVGDM 212
Query: 179 YGEDSTIDVDANFVMTDSGHIVEVQGSA--ERATFSQDHFFAMLNLAK 224
+ I + E++ S ++ +AK
Sbjct: 213 EDAEDNRGNIIIGYQPSLEQIAALLQDGVLEQSVLS-AQIRDLIKVAK 259
>gi|254580403|ref|XP_002496187.1| ZYRO0C12496p [Zygosaccharomyces rouxii]
gi|238939078|emb|CAR27254.1| ZYRO0C12496p [Zygosaccharomyces rouxii]
Length = 224
Score = 70.6 bits (171), Expect = 2e-10, Method: Composition-based stats.
Identities = 28/231 (12%), Positives = 67/231 (29%), Gaps = 20/231 (8%)
Query: 14 ISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGNR 73
I + + + +GS + T ++ + T + + R
Sbjct: 3 IIASTGILNHVDGSSEFESHSTKVVCSVTGPIEPKARQELPTQLALEIIVRPAKGVPNTR 62
Query: 74 VKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGA 133
K I+ + L ++ R I V++A +
Sbjct: 63 EK-------------LIEDKLRGVLTPLIARYLYPRRLCQITFQVMEAGEPELEFSQREL 109
Query: 134 WVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVM 193
++ + + D AI G L P S +
Sbjct: 110 SCCINAAVLALVDSGIGLLAM--ASSVPLAIIKGQLVVDPNAQQLQESQSVHTLALEITE 167
Query: 194 TDSG--HIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNEV 242
+ +I+ + + F+Q+ F +L+ ++R L++ + V+ + +
Sbjct: 168 SGKNVQNILLLDSTG---AFTQNELFQILSQGEERCLTLVQELRKVLGDRI 215
>gi|221482227|gb|EEE20582.1| conserved hypothetical protein [Toxoplasma gondii GT1]
Length = 392
Score = 70.6 bits (171), Expect = 2e-10, Method: Composition-based stats.
Identities = 27/173 (15%), Positives = 57/173 (32%), Gaps = 24/173 (13%)
Query: 1 MRLSGRQ-ENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWI 59
+R GR+ ++R +++ ++ A GS V G T ++ + P + + G
Sbjct: 27 LRPDGREHARELRPLTVKLGFARTAHGSARVSQGLTSVIALVVGPVEAPPGPKYSSSGCF 86
Query: 60 TAEYGM----LPRSTGNR-------------------VKREAVSGRQGGRSQEIQRMIGR 96
P + R +R + + ++ +
Sbjct: 87 FHVILKPLAGPPMLSAARTAAAIGGCDSAVASGTARGTRRGRGAFGSESFERWMECQLQT 146
Query: 97 ALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSN 149
L+ +V + + ++Q DGG +A I A AL D + +
Sbjct: 147 LLQHMVLPGEYPRCLVQLTLMILQDDGGAESACINAALAALIDAGVSLRFRAW 199
>gi|237842251|ref|XP_002370423.1| 3' exoribonuclease family, domain 1 containing protein [Toxoplasma
gondii ME49]
gi|211968087|gb|EEB03283.1| 3' exoribonuclease family, domain 1 containing protein [Toxoplasma
gondii ME49]
gi|221502879|gb|EEE28593.1| conserved hypothetical protein [Toxoplasma gondii VEG]
Length = 392
Score = 70.3 bits (170), Expect = 2e-10, Method: Composition-based stats.
Identities = 27/173 (15%), Positives = 57/173 (32%), Gaps = 24/173 (13%)
Query: 1 MRLSGRQ-ENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWI 59
+R GR+ ++R +++ ++ A GS V G T ++ + P + + G
Sbjct: 27 LRPDGREHARELRPLTVKLGFARTAHGSARVSQGLTSVIALVVGPVEAPPGPKYSSSGCF 86
Query: 60 TAEYGM----LPRSTGNR-------------------VKREAVSGRQGGRSQEIQRMIGR 96
P + R +R + + ++ +
Sbjct: 87 FHVILKPLAGPPMLSAARTAAAIGGCDSAVASGTARGTRRGRGAFGSESFERWMECQLQT 146
Query: 97 ALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSN 149
L+ +V + + ++Q DGG +A I A AL D + +
Sbjct: 147 LLQHMVLPGEYPRCLVQLTLMILQDDGGAESACINAALAALIDAGVSLRFRAW 199
>gi|153844108|ref|ZP_01993625.1| polyribonucleotide nucleotidyltransferase [Vibrio parahaemolyticus
AQ3810]
gi|149745259|gb|EDM56510.1| polyribonucleotide nucleotidyltransferase [Vibrio parahaemolyticus
AQ3810]
Length = 162
Score = 70.3 bits (170), Expect = 2e-10, Method: Composition-based stats.
Identities = 16/56 (28%), Positives = 26/56 (46%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHG 57
R+ R+++ +R + + V GS L G+T L TATL + I + G
Sbjct: 103 RIDSREKDMVRALDVRTGVLPRTHGSALFTRGETQALVTATLGTQRDAQIIDELTG 158
>gi|237739457|ref|ZP_04569938.1| nucleoside-triphosphatase [Fusobacterium sp. 2_1_31]
gi|229423065|gb|EEO38112.1| nucleoside-triphosphatase [Fusobacterium sp. 2_1_31]
Length = 262
Score = 70.3 bits (170), Expect = 2e-10, Method: Composition-based stats.
Identities = 29/67 (43%), Positives = 40/67 (59%)
Query: 175 VDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
VDL Y EDS +VD N +M G +EVQG+ E +TF++ +L+LA+ I +I LQ
Sbjct: 1 VDLKYSEDSAAEVDMNVIMNKKGEFIEVQGTGEESTFTRTELNGLLDLAEASIKRIINLQ 60
Query: 235 KDVISNE 241
VI E
Sbjct: 61 DKVIEQE 67
>gi|307214871|gb|EFN89739.1| Exosome complex exonuclease RRP45 [Harpegnathos saltator]
Length = 390
Score = 70.3 bits (170), Expect = 2e-10, Method: Composition-based stats.
Identities = 41/258 (15%), Positives = 79/258 (30%), Gaps = 23/258 (8%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
RL GR+ + R + + G C+V G T + + + + P R G I
Sbjct: 23 RLDGRRLLEARSVKIHFG---SNWGCCMVSLGHTKAIAQVSCDIQQPKISRP-NEGMIHI 78
Query: 62 EYGMLPRSTGNRVKREAVS-----GRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
+ + N RQ + + + + L S+ ++ I +D
Sbjct: 79 NVELSQLAAQNFESGRQSEAAVMISRQLEKCFKDSKCVD--LESLCIVADKKVWNIRVDI 136
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQV-----------LKGHVAAIS 165
++I DG A AL + + + + V
Sbjct: 137 NIINHDGNLIDCASIATLAALSHFHRPDVTSTGEEIIIHPASEKDFLSLTLFHYPVCISF 196
Query: 166 CGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAML-NLAK 224
G I+D Y E+ + + + T S + + N A
Sbjct: 197 ITFESGNTIMDPTYIEERIGVARLTLGVNSYKELCSLNFDYLTKTMSVKDVISAVSNHAA 256
Query: 225 DRIADLIKLQKDVISNEV 242
A L++ K+ ++N +
Sbjct: 257 TYAAKLVQQIKETVTNNI 274
>gi|294461855|gb|ADE76485.1| unknown [Picea sitchensis]
Length = 302
Score = 70.3 bits (170), Expect = 2e-10, Method: Composition-based stats.
Identities = 48/267 (17%), Positives = 84/267 (31%), Gaps = 28/267 (10%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+R R + R SL A+GS + K G T +L LE P G I
Sbjct: 33 VRPDARPLGRARATSLALGTVPTADGSAMAKIGHTTMLAGVKLEVMTPAA-EALDEGRIA 91
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGS---RQIIIDCD 117
++ M P + + V Q + + ++ +LS +D
Sbjct: 92 VDFQMPPICSPDVRPGRPVDAAAVISEQLSNVLASSGVINLKELSISKGQAAWMAYLDIY 151
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQL------------------------ 153
+ ADG AA+ A A + + ++
Sbjct: 152 CLDADGALFDAALLAAIGAFAHLRFPAVSMTEEGKVIPLSGDTVLEDGNKEQPKVQEQRQ 211
Query: 154 SQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQ 213
L +++C + + + D E+S V+ SG +V A S
Sbjct: 212 QLTLGKVPFSLTCMLYKKHILADPTAEEESVFQTTITVVLDPSGRLVSFYKPGGSALAST 271
Query: 214 DHFFAMLNLAKDRIADLIKLQKDVISN 240
+ L K R+ +L K+ + +S
Sbjct: 272 STIQDCVALTKYRVKELQKILDEALSE 298
>gi|218186707|gb|EEC69134.1| hypothetical protein OsI_38058 [Oryza sativa Indica Group]
Length = 334
Score = 70.3 bits (170), Expect = 2e-10, Method: Composition-based stats.
Identities = 42/313 (13%), Positives = 82/313 (26%), Gaps = 73/313 (23%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT------------------ 42
+R GR+ Q R IS+ V A GS V+ G T ++ T
Sbjct: 20 LRTDGRRRLQFRAISVETGVIPQANGSARVRLGATEVIATVKDIVQIEVDPAAAAEINAK 79
Query: 43 ------------------LEEKVPMWIRNTKHGW-----------------ITAEYGMLP 67
EE + G A + ++
Sbjct: 80 LTVAVQIEVVVVMRGDDDGEETRKRQRWGEERGCGDDGRGRDEPCGRLSWGNQAFFILIK 139
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
+ + ++ L S + Q+ D + +
Sbjct: 140 GKFPFLLIVAQLQHPCLRVEVLKNFLLSSVLHCKDAYSVVKVGQVCWDLYIDGLVVSSDG 199
Query: 128 AAITGAWVALHDCL------------------QHMEDCSNKFQLSQVLKGHVAAISCGML 169
+ A+ L + D S++ L ++ +
Sbjct: 200 NLLDALAGAIKVALSDTGIPKVNVSLSATTDEEPEVDVSDEEFLQFDTSSVPVIVTLTKV 259
Query: 170 CGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIAD 229
+ IVD E+S + + + G I + A F M+++AK
Sbjct: 260 GKHYIVDATSEEESQMSSAVSVSVNRHGQICGLTKRG-GAGLDPSVIFDMISVAKHVSRQ 318
Query: 230 LIKLQK-DVISNE 241
I + ++++ E
Sbjct: 319 FISVLDSEILAAE 331
>gi|157114354|ref|XP_001658056.1| hypothetical protein AaeL_AAEL006819 [Aedes aegypti]
gi|108877318|gb|EAT41543.1| conserved hypothetical protein [Aedes aegypti]
Length = 217
Score = 70.3 bits (170), Expect = 2e-10, Method: Composition-based stats.
Identities = 28/237 (11%), Positives = 68/237 (28%), Gaps = 34/237 (14%)
Query: 9 NQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPR 68
N +R + + ++GS ++ G+T ++ + +V + N + I +
Sbjct: 8 NSLRPMHCELNLLTRSDGSAMLTQGETAVVASVNGPIEVKLQHMNVEKSHIDIYFKPRSG 67
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
+ ++ +I S + I I +Q GG
Sbjct: 68 MG-------------SVNDRLLESLIKNTYESAILTGLHPRTAISIQLQEMQDQGGLVAC 114
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
AI +AL + M+ G + + +
Sbjct: 115 AINAVCLALMNSGIEMKFLVAAVHSVLREDGDIVLDPDALQSKDA--RAKFTFVFENCTR 172
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIAD-------LIKLQKDVI 238
+ G F+ + + L +A++ + ++ Q++V+
Sbjct: 173 NTVSIYTHGK------------FTTEQYHRALKMAEEAVEKVFGFYADIVGKQREVL 217
>gi|154279662|ref|XP_001540644.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
gi|150412587|gb|EDN07974.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
Length = 291
Score = 70.3 bits (170), Expect = 2e-10, Method: Composition-based stats.
Identities = 36/262 (13%), Positives = 74/262 (28%), Gaps = 26/262 (9%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE-EKVPMWIRNTKHGWI 59
+RL GR+ N++R + + + GS + G+T ++ E
Sbjct: 14 LRLDGRRWNELRLMQAQISTNPASSGSSYLSMGNTVVICMVHGPAEGRRSEATGPAREGA 73
Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRSQ---EIQRMIGRALRSVVDLSALGSRQIIIDC 116
+ +++ + GG Q ++ + A + + I +
Sbjct: 74 VVSVAVNVAGFSGVDRKKKSATGGGGDRQASTDLAFALRDAFQPHLHTHIYPHSTISLHV 133
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHM--------EDCSNKFQLSQVLKGHVAAISCGM 168
V+ +DG A I +AL D M S + +
Sbjct: 134 SVLSSDGSLFAACINACTLALVDAGIPMPGLLCACTVGMSGRASTPAEPELTRVGGINES 193
Query: 169 LCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVE-----------VQGSAERATFSQDHFF 217
L + + ++ AN +G VQ A +
Sbjct: 194 LDPLLDMSMPEEQELPFMTVANTNPAPTGDDSMDDQEENQMLSIVQMGA---GVHISYLE 250
Query: 218 AMLNLAKDRIADLIKLQKDVIS 239
M + D + ++ V+
Sbjct: 251 TMFAVGLDGCKQVREILNGVVK 272
>gi|301099917|ref|XP_002899049.1| exosome complex exonuclease MTR3-like protein [Phytophthora
infestans T30-4]
gi|262104361|gb|EEY62413.1| exosome complex exonuclease MTR3-like protein [Phytophthora
infestans T30-4]
Length = 252
Score = 70.3 bits (170), Expect = 2e-10, Method: Composition-based stats.
Identities = 48/231 (20%), Positives = 75/231 (32%), Gaps = 26/231 (11%)
Query: 2 RLSG-RQE-NQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEE-KVPMWIRNTKHGW 58
RL R ++MR + A GS V+ G T +L +K G
Sbjct: 26 RLDKSRTSSDEMRRPFMQLGAVSGAAGSAYVELGRTRVLCAVYGPRTDTRARREFSKDGQ 85
Query: 59 ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDV 118
+ + P + K Q E+ ++ AL V L L I + +
Sbjct: 86 LVCDVKYAPFA----DKLTRRERGQDPDEMELSAIVEEALAPAVMLHKLPKCIISVFVTI 141
Query: 119 IQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLD 178
++ DGG AA+ A +AL D M D V A S G++ G ++D
Sbjct: 142 LEDDGGVLAAALNCASLALADAAVEMYDV-------------VTASSAGIVNGSVVLDPS 188
Query: 179 YGEDSTIDVDANF-VMTDSGHIV-EVQGSAERATFSQDHFFAMLNLAKDRI 227
E+ D M G + +Q ++L D
Sbjct: 189 REEEQRGDGKLALAYMPSMGRVTYMLQA----GKIHHTQLQEAVDLCTDAC 235
>gi|325092610|gb|EGC45920.1| exonuclease RRP41 [Ajellomyces capsulatus H88]
Length = 291
Score = 69.9 bits (169), Expect = 3e-10, Method: Composition-based stats.
Identities = 36/262 (13%), Positives = 74/262 (28%), Gaps = 26/262 (9%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE-EKVPMWIRNTKHGWI 59
+RL GR+ N++R + + + GS + G+T ++ E
Sbjct: 14 LRLDGRRWNELRLMQAQISTNPASSGSSYLSMGNTVVICMVHGPAEGRRSEATGPAREGA 73
Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRSQ---EIQRMIGRALRSVVDLSALGSRQIIIDC 116
+ +++ + GG Q ++ + A + + I +
Sbjct: 74 VVSVAVNVAGFSGVDRKKKSATGGGGDRQASTDLAFALRDAFQPHLHTHIYPHSTISLHV 133
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHM--------EDCSNKFQLSQVLKGHVAAISCGM 168
V+ +DG A I +AL D M S + +
Sbjct: 134 SVLSSDGSLFAACINACTLALVDAGIPMPGLLCACTVGMSGRASTPAEPELTRVGGINES 193
Query: 169 LCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVE-----------VQGSAERATFSQDHFF 217
L + + ++ AN +G VQ A +
Sbjct: 194 LDPLLDMSMPEEQELPFMTVANTNPAPTGDDSMDDQEENQMLSIVQMGA---GVHISYLE 250
Query: 218 AMLNLAKDRIADLIKLQKDVIS 239
M + D + ++ V+
Sbjct: 251 TMFAVGLDGCKQVREILNGVVK 272
>gi|332374620|gb|AEE62451.1| unknown [Dendroctonus ponderosae]
Length = 174
Score = 69.9 bits (169), Expect = 3e-10, Method: Composition-based stats.
Identities = 24/142 (16%), Positives = 46/142 (32%), Gaps = 2/142 (1%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+R GR+ R + + A+GS + K G T ++ E P G++
Sbjct: 22 IRPDGREFEDYRPVIVNVGSISTADGSAIAKVGKTTVICGVKAELCRPRPECP-NKGFLV 80
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
+ P + Q +Q I +I + ++ L ++
Sbjct: 81 PNLELSPLCSSKFKSGPPGEEAQV-LTQLIADVIENSRCINLEELCLLKDKLAWCLYADL 139
Query: 121 ADGGTRTAAITGAWVALHDCLQ 142
+ + VAL CL+
Sbjct: 140 VCLDYDGSLLDACIVALMACLR 161
>gi|118399581|ref|XP_001032115.1| 3' exoribonuclease family, domain 1 containing protein [Tetrahymena
thermophila]
gi|89286453|gb|EAR84452.1| 3' exoribonuclease family, domain 1 containing protein [Tetrahymena
thermophila SB210]
Length = 240
Score = 69.9 bits (169), Expect = 3e-10, Method: Composition-based stats.
Identities = 49/244 (20%), Positives = 92/244 (37%), Gaps = 23/244 (9%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
R GR++N++R++ + EGSC + G T ++ R G++
Sbjct: 11 FREDGRKKNELRKVDCILGFDQTVEGSCKLIQGLTEIVCLIKGPHN--KSTRRESEGFLN 68
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
+Y + P S +R K + E + + SV+ LGS +I I VIQ
Sbjct: 69 VQYNVAPFSGTDRRKI----SKFDKDWNEFTENLRVSFESVILTEQLGSGEIDIIVSVIQ 124
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADG +++ +AL D M+D + + L ++D Y
Sbjct: 125 ADGSAKSSIFNAISLALMDAGIPMKDF-------------TVSSTVISLNSEILLDATYQ 171
Query: 181 EDSTIDVDANF-VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD-VI 238
E + + S + ++ + + SQ M +A D + ++ + V+
Sbjct: 172 EQKKASAELIISYLPRSDQVDFMEM--KSSKISQQDTKEMCKIAVDGCKQMYQILRTFVL 229
Query: 239 SNEV 242
+ V
Sbjct: 230 ESSV 233
>gi|224001004|ref|XP_002290174.1| predicted protein [Thalassiosira pseudonana CCMP1335]
gi|220973596|gb|EED91926.1| predicted protein [Thalassiosira pseudonana CCMP1335]
Length = 172
Score = 69.9 bits (169), Expect = 3e-10, Method: Composition-based stats.
Identities = 35/163 (21%), Positives = 55/163 (33%), Gaps = 17/163 (10%)
Query: 1 MRLSGRQENQMREISLTRRVSKYA------------EGSCLVKFGDTHLLTTATLE-EKV 47
+R GR+ +++R +S GS LV G T +L +
Sbjct: 8 LRSDGRRPHEIRHMSCHLGALPSTTACGSALPTSACSGSALVSMGLTQVLCVVRGPSDAG 67
Query: 48 PMWIRNTKHGWITAEYGMLPRSTG-NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSA 106
+ P S +R S R R E ++ AL + + L
Sbjct: 68 RRTEELPDRATLEVTMRTSPFSPPGDRRVTNPTSDR---RLIEQSHLLQTALSASILLHL 124
Query: 107 LGSRQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSN 149
+I + V+ DGG AAI A +AL D ++D
Sbjct: 125 YPKSKISVTVMVLADDGGRLEAAINAATLALIDAGIPLKDMVC 167
>gi|325180002|emb|CCA14404.1| exosome complex exonuclease RRP43 putative [Albugo laibachii Nc14]
Length = 293
Score = 69.9 bits (169), Expect = 3e-10, Method: Composition-based stats.
Identities = 41/254 (16%), Positives = 76/254 (29%), Gaps = 17/254 (6%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+R R + R + + V S LVK +T ++T L P I G I
Sbjct: 36 IRTDARTFDASRSMHIQTNVINSCYSSSLVKLKNTSVITGIQLAVGTPA-IDKQTEGDIV 94
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRA--LRSVVDLSALGSRQIIIDCDV 118
+ + P + R S I ++I RA + G + DV
Sbjct: 95 IQIHLTPLCS-TRFNVGRACEEANAVSSHISKIIRRARMIDLTQLSIEKGKSAWNVMIDV 153
Query: 119 IQADGGTRTAAITGAWVAL-------HDCLQHMEDCSNKFQL-----SQVLKGHVAAISC 166
D ++ + D + +++ + A S
Sbjct: 154 YCIDYDGNIFEVSLMSIMTALQKLRLPATRVSEVDHKVEIDSDEESRPLIMQRVLCATSF 213
Query: 167 GMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226
++ + ++D E+ N + T + V S L+ AK+R
Sbjct: 214 AIVNEHVLIDPTSEEEGLASSTFNIIYTTENELFGVYKPG-GTLISPAILKKCLDTAKNR 272
Query: 227 IADLIKLQKDVISN 240
+ K + +S
Sbjct: 273 TKKVAKQLLESLSQ 286
>gi|298710388|emb|CBJ25452.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 230
Score = 69.9 bits (169), Expect = 3e-10, Method: Composition-based stats.
Identities = 40/241 (16%), Positives = 75/241 (31%), Gaps = 23/241 (9%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R GR+ NQ+R ++ + + A+GS G+T +L +R + T
Sbjct: 5 RRDGRRANQIRPLAAEQGILNRADGSARFVQGNTSVLAAVYGPAPAK-SLRMERSEGATL 63
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
+ P S E + ++ R+L VV S + + VI
Sbjct: 64 DVSFKPESGIT-----------SSADAESEALLRRSLEEVVLRSRYPRTVVSVIIQVIVD 112
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
DG +AA+ A +AL + M + ++ E
Sbjct: 113 DGAVLSAALNAATMALLNAGVEMTGMALSVTCCITATVSGRSVLLDPCKA--------EE 164
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
++ G ++ + SQ+ +FA A + + +
Sbjct: 165 IDAAATAVVATLSAGGGVLSCHA---VGSMSQEEYFACCEAASLGTTAVRSFVRLSAEQK 221
Query: 242 V 242
V
Sbjct: 222 V 222
>gi|46122263|ref|XP_385685.1| hypothetical protein FG05509.1 [Gibberella zeae PH-1]
Length = 293
Score = 69.9 bits (169), Expect = 3e-10, Method: Composition-based stats.
Identities = 43/262 (16%), Positives = 79/262 (30%), Gaps = 31/262 (11%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+RL GR+ ++ R + +T G VK+G T +L + E VP R G T
Sbjct: 23 LRLDGRKFDEFRPLEITFG---DEYGVAEVKYGKTRVLAKVSAEVTVPYTDRPFD-GVFT 78
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSV--------VDLSALGSRQI 112
+ P + R + R++ + +R ++ I
Sbjct: 79 ITSELSPMVAPS-----YEVNRPSLEEVLLSRLLEKTIRRSGALDTESLCLIAGKKCWSI 133
Query: 113 IIDCDVIQADGGTRTAAITGAWVALHDCLQH-------------MEDCSNKFQLSQVLKG 159
+D V+ DG AA AL + +
Sbjct: 134 RVDLHVLAHDGNLTDAACVAVIAALRHFRKPDSSIEGETLTIYTPAEREPVPLSWLHSPF 193
Query: 160 HVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAM 219
V G +VD ++ E+ + + G I ++ F
Sbjct: 194 CVTYSFYGEDGSQVLVDTNWLEEKMRVSHCTYSLNKHGEISQISKLG-GKALDAPLFIQC 252
Query: 220 LNLAKDRIADLIKLQKDVISNE 241
A +R DL + + ++ +
Sbjct: 253 AQGALNRSKDLSNIVDNKLAED 274
>gi|71901440|ref|ZP_00683530.1| Polyribonucleotide nucleotidyltransferase [Xylella fastidiosa
Ann-1]
gi|71728811|gb|EAO30952.1| Polyribonucleotide nucleotidyltransferase [Xylella fastidiosa
Ann-1]
Length = 173
Score = 69.5 bits (168), Expect = 3e-10, Method: Composition-based stats.
Identities = 32/137 (23%), Positives = 49/137 (35%), Gaps = 11/137 (8%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTKHGWITAEYGMLPR 68
++L V++ A G+ +VK DT LL T T E + + G +P
Sbjct: 15 VTLETGEVARQASGAVIVKMDDTVLLVTVVAAKTAREGQDFFPLTVDYQEKFYAGGRIPG 74
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
S R GR + I R+I R +R + QII + +
Sbjct: 75 SFFKR------EGRATEKETLISRLIDRPIRPLFPEDYKNEVQIIAMVMSLDPEIDGDIP 128
Query: 129 AITGAWVALHDCLQHME 145
A+ GA AL +
Sbjct: 129 AMIGASAALSLAGIPFK 145
>gi|1323143|emb|CAA97098.1| unnamed protein product [Saccharomyces cerevisiae]
gi|323337705|gb|EGA78950.1| Rrp46p [Saccharomyces cerevisiae Vin13]
Length = 256
Score = 69.5 bits (168), Expect = 3e-10, Method: Composition-based stats.
Identities = 22/229 (9%), Positives = 63/229 (27%), Gaps = 14/229 (6%)
Query: 14 ISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGNR 73
+ + + +GS DT ++ + T + + R
Sbjct: 36 VQAEIGILDHVDGSSEFVSQDTKVICSVTGPIEPKARQELPTQLALEIIVRPAKGVATTR 95
Query: 74 VKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGA 133
K R + R L + + I A
Sbjct: 96 EKVLEDKLRAVLTPLITRHCYPRQLCQITCQILESGEDEAEFSLRE------LSCCINAA 149
Query: 134 WVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVM 193
++AL D + ++ + + + + ++
Sbjct: 150 FLALVDAGIALNSMCASIPIAIIKDTSDIIVDPTAEQLKISLSVHTLALEFVNGGKVV-- 207
Query: 194 TDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNEV 242
+++ + + + F++D F++L L + + +L+ + +I + +
Sbjct: 208 ---KNVLLLDSNGD---FNEDQLFSLLELGEQKCQELVTNIRRIIQDNI 250
>gi|291533814|emb|CBL06927.1| RNase PH [Megamonas hypermegale ART12/1]
Length = 91
Score = 69.5 bits (168), Expect = 4e-10, Method: Composition-based stats.
Identities = 33/72 (45%), Positives = 45/72 (62%)
Query: 171 GYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADL 230
PI+DL Y EDST D N VMT GH VE+QG+ E+ F+ + F ML A+ I +L
Sbjct: 12 NEPILDLCYEEDSTAIADMNIVMTGEGHFVEIQGTGEKQPFTHEQFSKMLAYAQKGIDEL 71
Query: 231 IKLQKDVISNEV 242
I QKD++ N++
Sbjct: 72 ISYQKDILGNDL 83
>gi|57087309|ref|XP_546833.1| PREDICTED: similar to homolog of yeast mRNA transport regulator 3
[Canis familiaris]
Length = 272
Score = 69.5 bits (168), Expect = 4e-10, Method: Composition-based stats.
Identities = 37/245 (15%), Positives = 76/245 (31%), Gaps = 28/245 (11%)
Query: 6 RQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK---------- 55
R ++R + + A+GS ++ G T +L + + R
Sbjct: 31 RDPTRLRPVYARAGLLSQAKGSAYLEAGGTKVLCAVSGPRQAEGSERGGGPAGAGGEAPA 90
Query: 56 --HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQII 113
G + ++ P + R GG +E+ + AL V L Q+
Sbjct: 91 ALRGRLLCDFRRAPFAGRRRRAPPG-----GGEERELALALQEALEPAVRLGRYPRAQLE 145
Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP 173
+ +++ G AA+T A +AL D M D + + +
Sbjct: 146 VSALLLEDGGSALAAALTAAALALADAGVEMYDLVVGC---------GLSRTPEPAPTWL 196
Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
+ E+ +M + + GS E + + + L + L +
Sbjct: 197 LDPTRLEEERAAAGLTVALMPVLNQVAGLLGSGEGGP--PESWAEAVRLGLEGCQRLYPV 254
Query: 234 QKDVI 238
+ +
Sbjct: 255 LQQCL 259
>gi|315050464|ref|XP_003174606.1| exosome complex exonuclease RRP45 [Arthroderma gypseum CBS 118893]
gi|311339921|gb|EFQ99123.1| exosome complex exonuclease RRP45 [Arthroderma gypseum CBS 118893]
Length = 292
Score = 69.5 bits (168), Expect = 4e-10, Method: Composition-based stats.
Identities = 35/224 (15%), Positives = 70/224 (31%), Gaps = 22/224 (9%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+RL GR+ +Q+R + LT GS V+ G T +L + E P R+ G T
Sbjct: 23 VRLDGRRFDQLRPVELTFG---EEHGSVKVQLGKTTVLVRISAELTTPRPERDCD-GIFT 78
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
+ + +GR + R + + + R +D + +
Sbjct: 79 VVVEL-----NDMALPGYETGRPSELEVSLSRTLDKIV----------RRSNALDTESLC 123
Query: 121 ADGGTRTAAITGA-WVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD--L 177
G + + D C + + + G + + +
Sbjct: 124 ISKGMICWNVRADIHILDCDGGLVDASCLAIMAGLLHFRLPESTVRDGEVTVFTTEEKVP 183
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLN 221
+ I + F + D G I+ + + S+ L+
Sbjct: 184 VQLNLTKIPLSVTFNLYDEGKIMLLDATTSEEAVSEGSLVVALD 227
>gi|145344856|ref|XP_001416940.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144577166|gb|ABO95233.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 285
Score = 69.5 bits (168), Expect = 4e-10, Method: Composition-based stats.
Identities = 41/245 (16%), Positives = 84/245 (34%), Gaps = 23/245 (9%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R GR + R + V+ A GS L K G T T P R + G++
Sbjct: 24 RGDGRPLGRARARTCATGVASGALGSALAKHGATTACAGVTATIATPDATRP-EEGFLEI 82
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRM-----IGRALRSVVDLSALGSRQIIIDC 116
P+++ + R+ + + +G+ L+ + + ++ +D
Sbjct: 83 AVDHAPQASEDARDGRTRGRREAAAAACASAVANAAVLGKDLKQLCVERGTFAWRVRVDV 142
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQ-----------------LSQVLKG 159
V+ DGG A+T AL DC+ + ++
Sbjct: 143 IVLCDDGGAADCAVTAVMAALRDCVLPEVAVTRGKVALEGDGTAMNGDGVRKGTRLDVQT 202
Query: 160 HVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAM 219
++ + + +VD E++ + + + V+T+ G + V ++D
Sbjct: 203 MPVCLTTALYREHLLVDPTREEEALSECEVSVVLTEDGLLRGVFKPGGEVEATEDTLMKC 262
Query: 220 LNLAK 224
+ AK
Sbjct: 263 IAAAK 267
>gi|241813566|ref|XP_002416505.1| exosomal 3'-5' exoribonuclease complex, subunit Rrp42, putative
[Ixodes scapularis]
gi|215510969|gb|EEC20422.1| exosomal 3'-5' exoribonuclease complex, subunit Rrp42, putative
[Ixodes scapularis]
Length = 290
Score = 69.5 bits (168), Expect = 4e-10, Method: Composition-based stats.
Identities = 38/259 (14%), Positives = 78/259 (30%), Gaps = 19/259 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW---IRNTKHG 57
+R GR + R+I L V GS V+ +T +L + + P +
Sbjct: 22 LRCDGRSCLEYRDIELETGVVSNCSGSAHVRLANTDILVGIKAQLETPDPGSTDQGRIEF 81
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
++ P R + + +Q + LRS+ + + +D
Sbjct: 82 FVDCTANADP-EFEGRGGEDIAAEISSALAQAYRSPKCLDLRSLAVVPGQQVWVLYVDIL 140
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKF--------------QLSQVLKGHVAA 163
+++ G A AL+D + +
Sbjct: 141 ILECGGSLVDAVSVAVKAALYDLKIPKVSVTVDENGDPEVEVSGDPFDVEKLSTENVPCF 200
Query: 164 ISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLA 223
I+ + I+D E + +T SG I + + + ++ ++ +
Sbjct: 201 ITLSKVGQQFILDATQEEQACAVGSLALAVTASGKIAALFKAGT-GSLHPENVMDVIEVG 259
Query: 224 KDRIADLIKLQKDVISNEV 242
+D A L + EV
Sbjct: 260 RDIGASLNAAVVAELEAEV 278
>gi|198471344|ref|XP_001355587.2| GA21908 [Drosophila pseudoobscura pseudoobscura]
gi|198145876|gb|EAL32646.2| GA21908 [Drosophila pseudoobscura pseudoobscura]
Length = 398
Score = 69.5 bits (168), Expect = 4e-10, Method: Composition-based stats.
Identities = 39/254 (15%), Positives = 74/254 (29%), Gaps = 18/254 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
RL GR+ + R++ LT GS +V GDT ++ T + P R +
Sbjct: 29 RLDGRKSGESRDVQLTFG---GEYGSVVVSLGDTKVMAQVTCDMGTPTTSRPNEGKLQLY 85
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRA--LRSVVDLSALGSRQIIIDCDVI 119
+ K E R L S+ S L I +D +V+
Sbjct: 86 VTLAGVSYLDSVQKTHDKRSLTLNSLLERTFRTSRCVDLESLCVASELHVWCIRVDVNVL 145
Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQ----------LSQVLKGHVAAISCGML 169
DG A+ AL + ++ + + + +++ +
Sbjct: 146 NHDGNLYDASTVAVLAALMHFRRPDVTFTDGELRTYTEKERDMIPLLFLHYPVSVTYCIY 205
Query: 170 --CGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRI 227
P VD E++T D + + A +R
Sbjct: 206 TSNFQPFVDPTLLEENTADSTIILSFNSYQELCTLNAGGT-VPTDVRTIMQCARSAANRC 264
Query: 228 ADLIKLQKDVISNE 241
++ + + +
Sbjct: 265 KAMVTFIRKALDQD 278
>gi|198433180|ref|XP_002130542.1| PREDICTED: similar to predicted protein isoform 1 [Ciona
intestinalis]
Length = 235
Score = 69.1 bits (167), Expect = 4e-10, Method: Composition-based stats.
Identities = 28/227 (12%), Positives = 66/227 (29%), Gaps = 18/227 (7%)
Query: 16 LTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGNRVK 75
K A+GS G+T ++ + + + ++ S
Sbjct: 21 CEMNALKNADGSAFYSQGETSVMVAVYGPGDLKETKQEIDKALVEVDFRPKLGS------ 74
Query: 76 REAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWV 135
+ ++R + + + L+ I ++Q G + AI V
Sbjct: 75 -------PTVNEKYLERFVQGVCENAIMLALHPRTAFAIIVQIMQDQGSLLSCAINAVCV 127
Query: 136 ALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTD 195
AL D M+ ++ K + + + +S + F +
Sbjct: 128 ALQDAGVSMKHLPVAVTVAL-RKESESELEDATDVLIINPTIKEESESFSILTFVFDSVN 186
Query: 196 SGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNEV 242
+ + L AK+ +++K +D ++ +V
Sbjct: 187 KNLLCM----HSQGPLLPKQHERCLKAAKEATEEVLKFFRDSVTQKV 229
>gi|294668515|ref|ZP_06733612.1| tRNA nucleotidyltransferase [Neisseria elongata subsp. glycolytica
ATCC 29315]
gi|291309478|gb|EFE50721.1| tRNA nucleotidyltransferase [Neisseria elongata subsp. glycolytica
ATCC 29315]
Length = 65
Score = 69.1 bits (167), Expect = 5e-10, Method: Composition-based stats.
Identities = 27/64 (42%), Positives = 38/64 (59%)
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+DY EDS D D N VM G I+E+QG+AE A F D ++ LA+ IA+L LQ+
Sbjct: 1 MDYPEDSGCDSDINVVMNGEGKIIEIQGTAEGAPFDFDELAKLIKLAQKGIAELSALQQR 60
Query: 237 VISN 240
++
Sbjct: 61 ALAE 64
>gi|171685834|ref|XP_001907858.1| hypothetical protein [Podospora anserina S mat+]
gi|170942878|emb|CAP68531.1| unnamed protein product [Podospora anserina S mat+]
Length = 297
Score = 69.1 bits (167), Expect = 5e-10, Method: Composition-based stats.
Identities = 43/264 (16%), Positives = 75/264 (28%), Gaps = 35/264 (13%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+RL GR+ Q R + LT G V G T +L A+ E VP R G
Sbjct: 23 VRLDGRELEQYRPLELTFGDQ---YGVADVTLGKTRVLAKASAELTVPYADRPLD-GIFN 78
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSV--------VDLSALGSRQI 112
+ P ++ R I R++ + +R ++ I
Sbjct: 79 IATELSPMTSPAF-----EVNRPTETEVLISRLLEKTVRRSGALDTESLCLVAGQKCWSI 133
Query: 113 IIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKF-------------QLSQVLKG 159
+D V+ DG AA AL +
Sbjct: 134 RVDVHVLSHDGNLIDAACFAVVAALRHFRKPDTSMEGGVLTVYTPAEREPVPLSWLHSPF 193
Query: 160 HVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQD--HFF 217
V G ++D + E+ + G I ++ A+ +
Sbjct: 194 CVTWSFFGEEGDVAVLDATWMEEQVRSGSCTISLNKHGEICQI---AKLGGVPVEAVSLL 250
Query: 218 AMLNLAKDRIADLIKLQKDVISNE 241
N+A + D+ ++ +
Sbjct: 251 QCTNVALVKAKDMSSKLDRWLAED 274
>gi|126136733|ref|XP_001384890.1| Exosome complex exonuclease RRP46 (Ribosomal RNA processing protein
46) [Scheffersomyces stipitis CBS 6054]
gi|126092112|gb|ABN66861.1| Exosome complex exonuclease RRP46 (Ribosomal RNA processing protein
46) [Scheffersomyces stipitis CBS 6054]
Length = 226
Score = 69.1 bits (167), Expect = 5e-10, Method: Composition-based stats.
Identities = 37/229 (16%), Positives = 72/229 (31%), Gaps = 14/229 (6%)
Query: 15 SLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGNRV 74
S+ + + ++GS + G T ++ + T + + R
Sbjct: 3 SVNTSLLQKSDGSAELLLGSTKVIASVTGPIEPKARQELPNQASLEILIRPAVGLATTRE 62
Query: 75 KREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAW 134
K R +S ++ R L VV + + V AAI +
Sbjct: 63 KLLEDKLRSLLQSIIVRFKYPRQLIQVVVQFLISDSKRTETDLVDYTSND-LNAAINCCY 121
Query: 135 VALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMT 194
AL D ++ A+ G L P V DS + N
Sbjct: 122 YALIDAGIALKASFVSLS---------IAVKNGNLTVNPTVYELAQSDSHHVICFNIEKG 172
Query: 195 DSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADL-IKLQKDVISNEV 242
+ I+ ++ + +D FAM++ A + + + Q+ + +V
Sbjct: 173 KANKILLLESQGD---IKEDELFAMISKAVEEAEKVHHEQQRKFVKEKV 218
>gi|255582593|ref|XP_002532079.1| exosome complex exonuclease rrp43, putative [Ricinus communis]
gi|223528261|gb|EEF30313.1| exosome complex exonuclease rrp43, putative [Ricinus communis]
Length = 303
Score = 69.1 bits (167), Expect = 5e-10, Method: Composition-based stats.
Identities = 44/264 (16%), Positives = 88/264 (33%), Gaps = 26/264 (9%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+R GR + R+ +L A+GS + K G T ++ +E P + G I
Sbjct: 36 IRPDGRSLGRARDTTLALGAVVSADGSAIAKIGSTTMMAAIKMEVMTPSS-ESPDEGCIA 94
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGS---RQIIIDCD 117
++ M P + Q ++ A+ + +LS + +D
Sbjct: 95 IDFHMPPICSPLVRPGRPAEAAPVVSKQLSDTIMSSAMIDLKELSLVSGKAAWMAYLDIY 154
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHME----------------------DCSNKFQLSQ 155
+ ADG AA+ A A + + + NK +
Sbjct: 155 CLDADGSLFDAALFSAVAAFTNLQIPIVSLNDDGKVVVVSDENEGGKREKEAVNKEKRKL 214
Query: 156 VLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDH 215
L+ +++C + Y + D E+S ++ V+ S +V
Sbjct: 215 TLRSLPFSLTCVLHKNYILADPTAEEESIMETLVTVVLDSSARLVSFYKPGGPVLAYTSA 274
Query: 216 FFAMLNLAKDRIADLIKLQKDVIS 239
+ L + R+ +L + + +S
Sbjct: 275 VQDCVALTRQRVKELQNILDEALS 298
>gi|158291117|ref|XP_312616.4| AGAP002348-PA [Anopheles gambiae str. PEST]
gi|157018221|gb|EAA07626.4| AGAP002348-PA [Anopheles gambiae str. PEST]
Length = 260
Score = 69.1 bits (167), Expect = 5e-10, Method: Composition-based stats.
Identities = 40/260 (15%), Positives = 78/260 (30%), Gaps = 30/260 (11%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
RL GR ++ R++ ++ G V G+T L T E P R G +
Sbjct: 10 RLDGRTLDEFRKLRISFG---SEWGLVHVILGETRALARITCEVVEPKATRP-NEGMLFL 65
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLS--------ALGSRQII 113
+ P + + GRQ ++ R++ RAL+ + ++
Sbjct: 66 NVELGPMAAPHFDG-----GRQSDECVQLNRILERALKDSNCVDLESLCLVSEEKVWKLR 120
Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMED-CSNKFQLSQVLKGHVAAISCGMLCGY 172
+D V+ +G A AL + + + + ++
Sbjct: 121 VDVTVLNHEGNAIDCCSIAALTALAHFKRPDITVDGEDVIVHTIEEKDPLKVTLFHYPLC 180
Query: 173 PIV-----------DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLN 221
D Y E+ + F + G + + T S +
Sbjct: 181 VSYAIFNQGKIAIADPTYLEERVAEARMVFGLNSYGELCGLHLGGTTLT-SAELLLRTSA 239
Query: 222 LAKDRIADLIKLQKDVISNE 241
A R +++ K I +
Sbjct: 240 KASKRARLVVERIKAAIQKD 259
>gi|73985827|ref|XP_864681.1| PREDICTED: similar to Exosome complex exonuclease RRP42 (Ribosomal
RNA processing protein 42) (Exosome component 7) (p8)
isoform 2 [Canis familiaris]
Length = 224
Score = 69.1 bits (167), Expect = 5e-10, Method: Composition-based stats.
Identities = 32/241 (13%), Positives = 57/241 (23%), Gaps = 52/241 (21%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+R+ GR R + + V GS VK G T +L E P + G++
Sbjct: 22 LRVDGRGCEDYRCVEVETDVVSNTSGSARVKLGHTDILVGVKAEMGTPK-LEKPNEGYLE 80
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
+T
Sbjct: 81 FFVDCSANATPEFEG--------------------------------------------- 95
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
R G +A S + + I + VD
Sbjct: 96 -----RGGDDLGTEIANTLYRIFNNKSSIDLKSLCISPREHCWILYVDVLLLECVDATLQ 150
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
E++ +T G + ++ + + + F M+ K L + V+
Sbjct: 151 EEACSLASLLVSVTSKGVVTCMRKVGK-GSLDPESIFEMMETGKRVGKVLHASLQSVLHK 209
Query: 241 E 241
E
Sbjct: 210 E 210
>gi|322799219|gb|EFZ20634.1| hypothetical protein SINV_00940 [Solenopsis invicta]
Length = 384
Score = 69.1 bits (167), Expect = 5e-10, Method: Composition-based stats.
Identities = 40/261 (15%), Positives = 82/261 (31%), Gaps = 29/261 (11%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
RL GR+ + R + + + G C+V G T ++T + + + P R G I
Sbjct: 23 RLDGRKLLEPRSVKIYFG---SSWGCCMVSLGHTRVVTQVSCDIQQPKASRP-NEGTIRI 78
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLS--------ALGSRQII 113
+ P + + SGR + I R + + + + +
Sbjct: 79 NVELAPLAAQHF-----ESGRPSEAAILISRQLEKCFKDSKCVDLESLCIVADKKVWNLR 133
Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQV-----------LKGHVA 162
ID +VI DG A AL + + + + +
Sbjct: 134 IDVNVINHDGNLIDCASVATLAALIHFHRPDVTSTGEEVIIHPASEKDFLPLTLFHYPIC 193
Query: 163 AISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAML-N 221
G ++D Y E+ + M + + T + + + +
Sbjct: 194 ISFITFQSGNTVMDPTYLEERVGVAELTLGMNSYRELCSLHFDYLTKTMIIEDVISAVSS 253
Query: 222 LAKDRIADLIKLQKDVISNEV 242
A + L++ K+ + +V
Sbjct: 254 HAANYATKLVQQIKETVMKDV 274
>gi|37362654|ref|NP_011609.2| Rrp46p [Saccharomyces cerevisiae S288c]
gi|118595829|sp|P53256|RRP46_YEAST RecName: Full=Exosome complex component RRP46; AltName:
Full=Ribosomal RNA-processing protein 46
gi|151943372|gb|EDN61685.1| 3'-5'-exoribonuclease [Saccharomyces cerevisiae YJM789]
gi|190406885|gb|EDV10152.1| 3'->5' exoribonuclease [Saccharomyces cerevisiae RM11-1a]
gi|207345132|gb|EDZ72051.1| YGR095Cp-like protein [Saccharomyces cerevisiae AWRI1631]
gi|256269404|gb|EEU04701.1| Rrp46p [Saccharomyces cerevisiae JAY291]
gi|259146598|emb|CAY79855.1| Rrp46p [Saccharomyces cerevisiae EC1118]
gi|285812288|tpg|DAA08188.1| TPA: Rrp46p [Saccharomyces cerevisiae S288c]
gi|323348611|gb|EGA82855.1| Rrp46p [Saccharomyces cerevisiae Lalvin QA23]
gi|323355041|gb|EGA86872.1| Rrp46p [Saccharomyces cerevisiae VL3]
Length = 223
Score = 69.1 bits (167), Expect = 5e-10, Method: Composition-based stats.
Identities = 22/229 (9%), Positives = 63/229 (27%), Gaps = 14/229 (6%)
Query: 14 ISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGNR 73
+ + + +GS DT ++ + T + + R
Sbjct: 3 VQAEIGILDHVDGSSEFVSQDTKVICSVTGPIEPKARQELPTQLALEIIVRPAKGVATTR 62
Query: 74 VKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGA 133
K R + R L + + I A
Sbjct: 63 EKVLEDKLRAVLTPLITRHCYPRQLCQITCQILESGEDEAEFSLRE------LSCCINAA 116
Query: 134 WVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVM 193
++AL D + ++ + + + + ++
Sbjct: 117 FLALVDAGIALNSMCASIPIAIIKDTSDIIVDPTAEQLKISLSVHTLALEFVNGGKVV-- 174
Query: 194 TDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNEV 242
+++ + + + F++D F++L L + + +L+ + +I + +
Sbjct: 175 ---KNVLLLDSNGD---FNEDQLFSLLELGEQKCQELVTNIRRIIQDNI 217
>gi|328767537|gb|EGF77586.1| hypothetical protein BATDEDRAFT_91577 [Batrachochytrium
dendrobatidis JAM81]
Length = 276
Score = 69.1 bits (167), Expect = 5e-10, Method: Composition-based stats.
Identities = 44/260 (16%), Positives = 79/260 (30%), Gaps = 30/260 (11%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+R GR N +R I +T G V+ G T +++T + E P + G I
Sbjct: 24 IRTDGRTSNTIRNIKITLG--PQL-GFAQVQLGKTRIMSTVSCEIVRPSSGNPSD-GVIH 79
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALG--------SRQI 112
P ++ I RM+ +ALR + G I
Sbjct: 80 FNTEFSPMASPAFEVDST-----SENEILISRMLEKALRRARVVDTEGLCIVAGEKVWAI 134
Query: 113 IIDCDVIQADGGTRTAAITGAWVALHDCLQHM----------EDCSNKFQLSQVLKGHVA 162
+D V+ +G A A +L + K + +
Sbjct: 135 RVDIRVLNHEGNILDCACIAAMCSLLHFKRPDVTVIGEDVTIHTLEEKNPIGLNIHHIPI 194
Query: 163 AISCGMLCGYPI--VDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAML 220
++ +D E+ D D V+ + + + S +
Sbjct: 195 CVTFAFFHQGEYQVIDPSLLEEQAQDGDMTIVVNIHRELCTLSKAG-GTPISPEQVIHCA 253
Query: 221 NLAKDRIADLIKLQKDVISN 240
N+A + AD+ +L + I
Sbjct: 254 NVAAIKSADITQLIRQAILE 273
>gi|194891452|ref|XP_001977495.1| GG18224 [Drosophila erecta]
gi|190649144|gb|EDV46422.1| GG18224 [Drosophila erecta]
Length = 415
Score = 69.1 bits (167), Expect = 5e-10, Method: Composition-based stats.
Identities = 41/252 (16%), Positives = 75/252 (29%), Gaps = 18/252 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R GR+ N+ R++ LT G+ V GDT +LT T + P R + +
Sbjct: 29 RFDGRRSNECRDVELTFG---SDWGTVAVSMGDTKVLTRVTCDMGTPATSRPNEGKFQLN 85
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRA--LRSVVDLSALGSRQIIIDCDVI 119
E R+ L S+ + I +D +V+
Sbjct: 86 VNLAGVAFLDELQTTHDQRSLTLNSLLERTFRSSRSVDLESLCVAAEHHVWCIRVDVNVL 145
Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQ----------LSQVLKGHVAAISCGML 169
DG A+ AL + ++ + + + +++ +
Sbjct: 146 NHDGNLYDASTIATLAALMHFRRPDVTFADDKLRIYTEKERDFIPLLFLHYPVSVTYCIY 205
Query: 170 C--GYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRI 227
PIVD E++ D + + T + N A R
Sbjct: 206 KSSWQPIVDPTLLEENAADSVIVLSFNSYQELCSLNAGGTAPTNVRTIMQCARNAA-TRC 264
Query: 228 ADLIKLQKDVIS 239
L+ + +S
Sbjct: 265 KSLVDFIRKALS 276
>gi|328771377|gb|EGF81417.1| hypothetical protein BATDEDRAFT_23824 [Batrachochytrium
dendrobatidis JAM81]
Length = 217
Score = 69.1 bits (167), Expect = 5e-10, Method: Composition-based stats.
Identities = 26/205 (12%), Positives = 53/205 (25%), Gaps = 24/205 (11%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R R Q+R + + A+GS G + +L + H I
Sbjct: 18 RPDKRSVTQLRTMGCVVGMLSRADGSARFTLGKSSVLCSVYGPTASRPRDEKLDHAHIQV 77
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
+ + +G + + + I + + ++V + I I V+
Sbjct: 78 VFSPVSGISGTQERTY-------------EHFIRQVVEAIVLSALHPRTTIQITLQVLFD 124
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
DG + AI A +AL D + +
Sbjct: 125 DGSILSTAINAAVLALIDAGIP-----------LSKTCSAVTCMISKEGVLLLDPVLLEC 173
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSA 206
+ ++ V +
Sbjct: 174 SEAQSMHILVPDATFSEVLAVHSTG 198
>gi|303323507|ref|XP_003071745.1| 3' exoribonuclease family, domain 1 containing protein
[Coccidioides posadasii C735 delta SOWgp]
gi|240111447|gb|EER29600.1| 3' exoribonuclease family, domain 1 containing protein
[Coccidioides posadasii C735 delta SOWgp]
gi|320035116|gb|EFW17058.1| exosome complex endonuclease 1/ribosomal RNA processing protein
[Coccidioides posadasii str. Silveira]
Length = 298
Score = 69.1 bits (167), Expect = 5e-10, Method: Composition-based stats.
Identities = 35/265 (13%), Positives = 76/265 (28%), Gaps = 25/265 (9%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPM--WIRNTKHGW 58
+RL GR+ N++R + + + GS + G+T ++ +
Sbjct: 14 LRLDGRRWNELRLVQAQISTNPASSGSSYLAMGNTVVVCNVHGPAEGKRSETAGGGGGAV 73
Query: 59 ITAEYGMLPRSTGNRVKREAVSGRQGGRSQ--------EIQRMIGRALRSVVDLSALGSR 110
++ + + +R K+ ++G GG E+ + A + +
Sbjct: 74 VSVVVNIAGFAGVDRKKKSMMAGGGGGGGGGGDRQATTELSSALRDAFQPHLHTHIYPHS 133
Query: 111 QIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLK---------GHV 161
I + V+ +DG A I +AL D M + +
Sbjct: 134 TISLHVSVLSSDGSIFAACINACTLALVDAGIPMPGLLCACTVGMSGRASTPAAELAQSR 193
Query: 162 AAISCGMLCGYPIVDLDYGEDSTIDVDAN---FVMTDSGHIVEVQGSA---ERATFSQDH 215
L + + AN E Q + + +
Sbjct: 194 VGGINESLDPLLDLSRPEELELPHMTVANTNPVAGASEEGEEEEQMLSIVRMESGVHISY 253
Query: 216 FFAMLNLAKDRIADLIKLQKDVISN 240
M + D + ++ V+ +
Sbjct: 254 LETMFAVGIDGCKQVREILNGVLKS 278
>gi|195567204|ref|XP_002107160.1| GD15722 [Drosophila simulans]
gi|194204561|gb|EDX18137.1| GD15722 [Drosophila simulans]
Length = 407
Score = 69.1 bits (167), Expect = 5e-10, Method: Composition-based stats.
Identities = 37/252 (14%), Positives = 73/252 (28%), Gaps = 18/252 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
RL GR+ N+ R++ LT GS V GDT ++ E +P R +
Sbjct: 29 RLDGRRSNESRDVELTFGTD---WGSVAVSMGDTKVMAQVICEMGLPSLSRPNEGKLQLN 85
Query: 62 EY--GMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119
G+ + + + L S+ + I ++ +VI
Sbjct: 86 VLLGGVAFLDEAYSTHDQRSLKLNSLLERTFRSSKCIDLESLCVAAEKHVWCIRVNVNVI 145
Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQ----------LSQVLKGHVAAISCGML 169
DG A+ AL + + + + +++ +
Sbjct: 146 NHDGNLYDASSIATLAALMHFRRPDVSYKDGELRIFKQNGLEFTPLLFHHYPVSVTYCVY 205
Query: 170 CG--YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRI 227
PI+D E++ D + + A + A R
Sbjct: 206 KSSGQPILDPTLLEENAADSVIVLSFNSYQELCSLTAGGT-APTNAPIVMQCARNAAARC 264
Query: 228 ADLIKLQKDVIS 239
L+ + ++
Sbjct: 265 KSLLDFVRKALA 276
>gi|196007548|ref|XP_002113640.1| hypothetical protein TRIADDRAFT_14906 [Trichoplax adhaerens]
gi|190584044|gb|EDV24114.1| hypothetical protein TRIADDRAFT_14906 [Trichoplax adhaerens]
Length = 267
Score = 69.1 bits (167), Expect = 6e-10, Method: Composition-based stats.
Identities = 42/254 (16%), Positives = 78/254 (30%), Gaps = 21/254 (8%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
RL R R I L V G+ VK G + +L T E + I + G +
Sbjct: 20 RLDSRNLYDYRPIKLQFGV---EYGTAEVKLGASRVLAVTTCE--LIRPITRPEEGRLLF 74
Query: 62 EYGMLPRSTG---------------NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSA 106
+ P ++ R+++ V + V +
Sbjct: 75 NVELSPMASPLNHSNDVIDRRIALERRLEQCFVESAAIDLESLCVIAGEKVWFIRVAIHV 134
Query: 107 LGSRQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISC 166
L I+DC I A V D H + + L+ +
Sbjct: 135 LDDVGNILDCASIAAIASLAHFRRPQVTVVGEDVTIHNRNEKDYIPLNIHHMPLCITFAF 194
Query: 167 GMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226
G +D E++ ++ + I +Q + T D N+A +
Sbjct: 195 FHGNGCMAIDPTDQEEAVMESKLVMALNRHREICTIQFTG-GVTLKVDQVLHCCNIALTK 253
Query: 227 IADLIKLQKDVISN 240
++IKL + ++++
Sbjct: 254 ANEIIKLVQRMLND 267
>gi|209879934|ref|XP_002141407.1| 3' exoribonuclease family protein [Cryptosporidium muris RN66]
gi|209557013|gb|EEA07058.1| 3' exoribonuclease family protein, putative [Cryptosporidium muris
RN66]
Length = 414
Score = 68.7 bits (166), Expect = 6e-10, Method: Composition-based stats.
Identities = 47/273 (17%), Positives = 78/273 (28%), Gaps = 43/273 (15%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+R+ GR N+ R I +T K +G VK G TH+L E +P I G +T
Sbjct: 13 LRIDGRTSNEFRRIQITLN--KTFDG-VEVKIGKTHVLCIIKAELMIPN-IDRPSEGQVT 68
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSAL--------GSRQI 112
P S + + S E+ I R L+ + I
Sbjct: 69 FSVDYGPLSLN--PNGQVYRHERNALSIELANYIERTLKETGAFDTEVLCIISGLCAWSI 126
Query: 113 IIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCS---------------NKFQLSQVL 157
D + DG I A DCS +
Sbjct: 127 RCDIRALCDDGNLFDTCILATLSAFRHFRYKDIDCSSFLNKLKLNKYKNKDYLRIEQAIK 186
Query: 158 KGHVAAISCGMLC-------------GYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQG 204
+ ++ IVD E+S + + + + +
Sbjct: 187 NMDMIPLNIYHFPLSISIGYTRVNNELQYIVDPCSEEESILQAVLHIAINGGQQVCGLSK 246
Query: 205 SAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
+ D + LAK+ +++ + K V
Sbjct: 247 PGGEK-LTIDQINFAIQLAKNHGSNIHEYVKKV 278
>gi|302903929|ref|XP_003048964.1| predicted protein [Nectria haematococca mpVI 77-13-4]
gi|256729898|gb|EEU43251.1| predicted protein [Nectria haematococca mpVI 77-13-4]
Length = 293
Score = 68.7 bits (166), Expect = 6e-10, Method: Composition-based stats.
Identities = 41/262 (15%), Positives = 74/262 (28%), Gaps = 31/262 (11%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+RL GR+ +Q R + LT G VK+G T +L T E VP R G T
Sbjct: 23 LRLDGRKFDQFRPLELTFG---DEYGVAEVKYGKTRVLAKVTAEVTVPYSDRPFD-GVFT 78
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGR------ALRSVVDLSALGSRQIII 114
+ P + R + R++ + AL + G + I
Sbjct: 79 ITSELSPMVAPS-----YEVNRPSLEEVLLSRLLEKTVRRSGALDTESLCLIAGQKCWSI 133
Query: 115 DCDVIQADGGTRTAAI---------------TGAWVALHDCLQHMEDCSNKFQLSQVLKG 159
D+ + + + +
Sbjct: 134 RVDLHVLTHDGNLTDAACLAVVAALRHFRKPDSSIEGENLTVYTPAEREPVPLSWLHSPF 193
Query: 160 HVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAM 219
V G +VD ++ E+ + + G I ++ + F
Sbjct: 194 CVTYSFFGEEGNQVLVDANWLEEQLRVAYCTYSLNKHGEICQIAKLG-GTSLDAPLFIQC 252
Query: 220 LNLAKDRIADLIKLQKDVISNE 241
A +R +L L ++ +
Sbjct: 253 AQGALNRSKELSDLVDRKLAED 274
>gi|218679365|ref|ZP_03527262.1| ribonuclease PH [Rhizobium etli CIAT 894]
Length = 71
Score = 68.7 bits (166), Expect = 6e-10, Method: Composition-based stats.
Identities = 34/68 (50%), Positives = 51/68 (75%)
Query: 172 YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231
P++DLDY EDS+ + DANFVMT +G IVE+QG+AE F+++ F +++ LAK+ I +L+
Sbjct: 3 QPVIDLDYLEDSSAETDANFVMTGAGGIVEIQGTAEGTPFTEEEFSSLMGLAKNGIGELV 62
Query: 232 KLQKDVIS 239
LQK I+
Sbjct: 63 ALQKQAIA 70
>gi|85087002|ref|XP_957805.1| hypothetical protein NCU00334 [Neurospora crassa OR74A]
gi|28918900|gb|EAA28569.1| conserved hypothetical protein [Neurospora crassa OR74A]
Length = 297
Score = 68.7 bits (166), Expect = 6e-10, Method: Composition-based stats.
Identities = 42/264 (15%), Positives = 80/264 (30%), Gaps = 35/264 (13%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+RL GR+ +Q R + LT G V G T +L A+ E VP + G T
Sbjct: 24 IRLDGREFDQYRPLELTFG---DEYGVANVSLGKTKILAKASAEVTVP-FADRPLDGIFT 79
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSV--------VDLSALGSRQI 112
+ P + + R + R++ + +R ++ +
Sbjct: 80 IATELSPMAAPHF-----EVNRPTETEVLLSRLLEKTVRRSGALDTESLCLVAGQKCWSV 134
Query: 113 IIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQL-------------SQVLKG 159
+D V+ DG AA AL + N
Sbjct: 135 RVDVHVLSHDGNLTDAACFAVVAALRHFRKPDTSMENGVLTVYTPAEREPVPLGWLHSPF 194
Query: 160 HVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQD--HFF 217
V G ++D D+ E+ + G I ++ A+ +
Sbjct: 195 CVTWSFFGEEGETALLDADWMEEQVRVASVTISLNRHGEICQI---AKLGGVPVEAVALL 251
Query: 218 AMLNLAKDRIADLIKLQKDVISNE 241
++A ++ + D ++ +
Sbjct: 252 QCTSVALTKVKEFSTYLDDKLAED 275
>gi|321262921|ref|XP_003196179.1| hypothetical Protein CGB_I2130C [Cryptococcus gattii WM276]
gi|317462654|gb|ADV24392.1| conserved hypothetical protein [Cryptococcus gattii WM276]
Length = 299
Score = 68.7 bits (166), Expect = 7e-10, Method: Composition-based stats.
Identities = 35/285 (12%), Positives = 75/285 (26%), Gaps = 44/285 (15%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R GR Q+R + L+ A+GS FG +L + + +V +
Sbjct: 9 RPDGRTPAQLRPLHLSIGELDRADGSARFAFGSNAVLASCSGPIEVRLREELPDKATFEV 68
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALG------------- 108
+ L + + R+L +V S +
Sbjct: 69 NHRPLEGVGATPSRALVTTLETIFPPVLSLEKHPRSLVQLVVQSLMPSTCRAVYGSVIGT 128
Query: 109 ----------------SRQIIIDCDVIQADGGTRTAAITGAWVALHDC-LQHMEDCSNKF 151
+ + A A A + +
Sbjct: 129 EGVGAEQNTWPATDNDEYAYVPESKRDAARISPAAGYTFTARAASINASTLALLSAGTIS 188
Query: 152 QLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDA----NFVMTDSGHIVEV----Q 203
L+ + + + G + P D + + F G+ +EV +
Sbjct: 189 ILALPVAVALVVTTEGSMMLDPEADEEKQAKARFGFGWAWGAIFGTASEGNSMEVAGQSE 248
Query: 204 GSAE------RATFSQDHFFAMLNLAKDRIADLIKLQKDVISNEV 242
G AE F++ + L ++K +++ + + +
Sbjct: 249 GGAELVWVESEGNFTRQEWSEALEMSKTATKAILEFIRIQLDAHL 293
>gi|156366152|ref|XP_001627004.1| predicted protein [Nematostella vectensis]
gi|156213900|gb|EDO34904.1| predicted protein [Nematostella vectensis]
Length = 266
Score = 68.7 bits (166), Expect = 7e-10, Method: Composition-based stats.
Identities = 32/237 (13%), Positives = 60/237 (25%), Gaps = 18/237 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R GR R + + GS ++ DT +L E P + G +
Sbjct: 23 RSDGRSCEDYRYFEVETGIVSNTSGSARLRLSDTDILVGVKAEIGEPN-LLTPGCGRVEF 81
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRA---LRSVVDLSALGSRQIIIDCDV 118
++ R + ++ L S+ + + +D V
Sbjct: 82 FVDCSSNASVEFNGRSGDDLAADLMRSLDRTYSNKSAIDLSSLSIIHGQQCWVLYVDTLV 141
Query: 119 IQADGGTRTAAITGAWVALHDCLQHME-------------DCSNKFQLSQVLKGHVAAIS 165
++ G A AL++ I+
Sbjct: 142 LECGGNLYDALSLAVKAALYNTRIPNVTVSSDGGEVELEISDDPYDCHQLPPDQMPIIIT 201
Query: 166 CGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNL 222
+ G +VD E+ D + G++ Q D ML +
Sbjct: 202 LSKIGGRHVVDASQSEELCSDCHLLVAVNSCGNVCGQQKIG-CGGLEPDTICEMLEV 257
>gi|30794378|ref|NP_082550.1| exosome complex component MTR3 [Mus musculus]
gi|81875189|sp|Q8BTW3|EXOS6_MOUSE RecName: Full=Exosome complex component MTR3; AltName: Full=Exosome
component 6; AltName: Full=mRNA transport regulator 3
homolog
gi|26353554|dbj|BAC40407.1| unnamed protein product [Mus musculus]
gi|109734233|gb|AAI16986.1| Exosome component 6 [Mus musculus]
gi|111599953|gb|AAI19083.1| Exosome component 6 [Mus musculus]
Length = 273
Score = 68.7 bits (166), Expect = 7e-10, Method: Composition-based stats.
Identities = 41/245 (16%), Positives = 81/245 (33%), Gaps = 27/245 (11%)
Query: 6 RQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK---------- 55
R ++R + + A+GS ++ G T +L + + R +
Sbjct: 31 RDPTRLRPVYARAGLLSQAKGSAYLEAGGTKVLCAVSGPRQAEGGERGSGPAGAGGEAPA 90
Query: 56 --HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQII 113
G + ++ P S R + GG +E+ + AL V L Q+
Sbjct: 91 ALRGRLLCDFRRAPFSGRRRRAPQGG----GGEDRELGLALQEALEPAVRLGRYPRAQLE 146
Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP 173
+ +++ G AA+T A +AL D M D LS + G +
Sbjct: 147 VSALLLEDGGCALAAALTAAALALADAGVEMYDLVVGCGLSL---------TPGPSPTWL 197
Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
+ E+ + +M + + GS E + + + L + L +
Sbjct: 198 LDPTRLEEEHSAAGLTVALMPVLNQVAGLLGSGEGG--QTESWTDAVRLGLEGCQRLYPV 255
Query: 234 QKDVI 238
+ +
Sbjct: 256 LQQCL 260
>gi|213417938|ref|ZP_03351026.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar Typhi
str. E01-6750]
Length = 148
Score = 68.7 bits (166), Expect = 7e-10, Method: Composition-based stats.
Identities = 81/145 (55%), Positives = 100/145 (68%), Gaps = 2/145 (1%)
Query: 38 LTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRA 97
L TA++EE VP +++ GWITAEYGMLPR+T R REA G+QGGR+ EIQR+I RA
Sbjct: 2 LCTASIEEGVPRFLKGQGQGWITAEYGMLPRATHTRNAREAAKGKQGGRTMEIQRLIARA 61
Query: 98 LRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVL 157
LR+ VDL LG I +DCDVIQADGGTRTA+ITGA VAL D L + + +
Sbjct: 62 LRAAVDLKTLGEFTITLDCDVIQADGGTRTASITGACVALADALNKLVAN--GKLKTNPM 119
Query: 158 KGHVAAISCGMLCGYPIVDLDYGED 182
KG VAA+S G++ G I DL+Y ED
Sbjct: 120 KGMVAAVSVGIVNGEAICDLEYVED 144
>gi|146414860|ref|XP_001483400.1| hypothetical protein PGUG_04129 [Meyerozyma guilliermondii ATCC
6260]
gi|146391873|gb|EDK40031.1| hypothetical protein PGUG_04129 [Meyerozyma guilliermondii ATCC
6260]
Length = 221
Score = 68.7 bits (166), Expect = 7e-10, Method: Composition-based stats.
Identities = 28/227 (12%), Positives = 63/227 (27%), Gaps = 18/227 (7%)
Query: 16 LTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGNRVK 75
L+ + +GS + G T ++ + T + + + R K
Sbjct: 5 LSTSILTKVDGSSQLTVGGTKVVVSVTGPIEPKLRHELPTQSSFEIIIRPAVGVSSTREK 64
Query: 76 REAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWV 135
+L V RQ+I
Sbjct: 65 LMEDKL--------------LSLLQNVIARFQNPRQLIQIVIQFLITEPIPNHYTNSQLS 110
Query: 136 ALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTD 195
A + + +N L + AI + P + +S V
Sbjct: 111 AAANACYYALIDANVPLLCSFAAVPI-AIYKNEIIANPAPQVITESESNHVVCYGIHDAK 169
Query: 196 SGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNEV 242
+ ++ V+ +F+ + F +L++A+ + + Q+ + +V
Sbjct: 170 ADSLLLVESQG---SFTSEQLFKVLDIAQKECESVHQEQRTYLQEKV 213
>gi|195020434|ref|XP_001985193.1| GH14641 [Drosophila grimshawi]
gi|193898675|gb|EDV97541.1| GH14641 [Drosophila grimshawi]
Length = 415
Score = 68.3 bits (165), Expect = 8e-10, Method: Composition-based stats.
Identities = 34/254 (13%), Positives = 70/254 (27%), Gaps = 20/254 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAE-GSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWI 59
+R GR+ N+ R++ LT A+ G+ + GDT +L + + P R +
Sbjct: 28 IRFDGRKSNEFRDVKLTFG----ADWGTVALSMGDTKVLAQVSCDIGTPSSARGNEGTLH 83
Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLS--ALGSRQIIIDCD 117
E R L + +D +
Sbjct: 84 LNVDIKGVAFLDEVQATHDQRQLTLNSLLERTFRSSRCLDLESLCIATEQHVWCVRVDIN 143
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQ----------LSQVLKGHVAAISCG 167
V+ DG A+ A AL + + + + +++
Sbjct: 144 VLNHDGNLYDASTIAALAALMHFRRPDVSFIEDEIRTYSERERELMPLLFLHYPVSVTYC 203
Query: 168 MLC--GYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKD 225
+ P+VD E++ D + + T + A+
Sbjct: 204 VYKSSTQPLVDPTLLEENAADSIIVLSFNSYQELCTLNAGGTAPTNVRTIMQCAHGAARR 263
Query: 226 RIADLIKLQKDVIS 239
L++ + +
Sbjct: 264 S-KALVQFIRKALE 276
>gi|34787346|dbj|BAC87791.1| polynucleotide phosphorylase [Streptococcus bovis]
Length = 159
Score = 68.3 bits (165), Expect = 9e-10, Method: Composition-based stats.
Identities = 27/149 (18%), Positives = 55/149 (36%), Gaps = 10/149 (6%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKV---PMWIRNTKHGWITAEYGMLP 67
R + + V+K A G+ ++++G++ +L+ A + +K+ + + G P
Sbjct: 13 RPLVVEIGQVAKQANGAAVIRYGESTVLSAAVMSKKMSTGDFFPLQVNYEEKMYAAGKFP 72
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R GR + R+I R +R + Q+I D
Sbjct: 73 GGFNKR------EGRPTTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDEDASAPM 126
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQV 156
AA+ G+ +AL Q++ +
Sbjct: 127 AAMFGSSLALSISDIPFNGPIAGVQVAYI 155
>gi|195168570|ref|XP_002025104.1| GL26867 [Drosophila persimilis]
gi|194108549|gb|EDW30592.1| GL26867 [Drosophila persimilis]
Length = 398
Score = 68.3 bits (165), Expect = 9e-10, Method: Composition-based stats.
Identities = 39/254 (15%), Positives = 74/254 (29%), Gaps = 18/254 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
RL GR+ + R++ LT GS +V GDT ++ T + P R +
Sbjct: 29 RLDGRKSGESRDVQLTFG---GEYGSVVVSLGDTKVMAQVTCDMGTPTTSRPNEGKLQLY 85
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRA--LRSVVDLSALGSRQIIIDCDVI 119
+ K E R L S+ S L I +D +V+
Sbjct: 86 VTLAGVSYLDSVQKTHDKRSLTLNSLLERTFRTSRCVDLESLCVASELHVWCIRVDVNVL 145
Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQ----------LSQVLKGHVAAISCGML 169
DG A+ AL + ++ + + + +++ +
Sbjct: 146 NHDGNLYDASTVAVLAALMHFRRPDVTFTDGELRTYTEKERDMIPLLFLHYPVSVTYCIY 205
Query: 170 --CGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRI 227
P VD E++T D + + A +R
Sbjct: 206 TSNFQPFVDPTLLEENTADSTIILSFNSYQELCTLNAGGT-VPTDVRTIMQCARSAANRC 264
Query: 228 ADLIKLQKDVISNE 241
++ + + +
Sbjct: 265 KAMVTFVRKALDQD 278
>gi|295663905|ref|XP_002792505.1| 3' exoribonuclease family [Paracoccidioides brasiliensis Pb01]
gi|226279175|gb|EEH34741.1| 3' exoribonuclease family [Paracoccidioides brasiliensis Pb01]
Length = 296
Score = 68.3 bits (165), Expect = 9e-10, Method: Composition-based stats.
Identities = 41/266 (15%), Positives = 78/266 (29%), Gaps = 30/266 (11%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRN---TKHG 57
+RL GR+ N++R + + GS + G+T ++ + +
Sbjct: 14 LRLDGRRWNELRLMQAQISTNPATSGSSYLAMGNTVVICMVHGPAEGRRSEATGPAREGA 73
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRM-----IGRALRSVVDLSALGSRQI 112
I+ + S +R K+ +G GG + A + + I
Sbjct: 74 VISVAVNIAGFSGVDRKKKSLAAGGGGGGGDRQASTDLAVALRDAFQPHLHTHLYPHSTI 133
Query: 113 IIDCDVIQADGGTRTAAITGAWVALHDCLQHM--------EDCSNKFQLSQVLKGHVAAI 164
++ V+ +DG A I +AL D M S + +
Sbjct: 134 SLNISVLSSDGSLFAACINACTLALVDAGIPMPGLLCACTVGMSGRASTPATPEMKRVGG 193
Query: 165 SCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVE-----------VQGSAERATFSQ 213
L + + ++ AN SGH VQ +
Sbjct: 194 INESLDPLLDMSMPEEQELPFMTVANSNPAPSGHDSMDDEEDNQMLSVVQM---ESGVHI 250
Query: 214 DHFFAMLNLAKDRIADLIKLQKDVIS 239
+ M + D + ++ VI
Sbjct: 251 SYLETMFAVGLDGCKQVREILNGVIK 276
>gi|311266143|ref|XP_001927006.2| PREDICTED: exosome complex exonuclease RRP43-like [Sus scrofa]
Length = 137
Score = 67.9 bits (164), Expect = 1e-09, Method: Composition-based stats.
Identities = 18/82 (21%), Positives = 29/82 (35%), Gaps = 1/82 (1%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R GR+ + R ++ A+GS LVK G+T ++ E P G+I
Sbjct: 23 RPDGRELGEFRTTTVNVGSIGTADGSSLVKLGNTTVICGIKAEFGAPPT-DAPDKGYIVP 81
Query: 62 EYGMLPRSTGNRVKREAVSGRQ 83
+ P + Q
Sbjct: 82 NVDLSPLCSWRFRSGPPGEEAQ 103
>gi|169642585|gb|AAI60927.1| Pnpt1 protein [Rattus norvegicus]
Length = 383
Score = 67.9 bits (164), Expect = 1e-09, Method: Composition-based stats.
Identities = 34/196 (17%), Positives = 66/196 (33%), Gaps = 9/196 (4%)
Query: 45 EKVPMWIRNTKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDL 104
+++ I K Y P +T K V+ R+ G +AL V+
Sbjct: 8 DQIITAINGVKDKNFMLHYEFPPYATNETGKVTGVNRRELGHGAL----AEKALCPVIPK 63
Query: 105 SALGSRQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAI 164
I + +V++++G + A+ G +AL D + + V K +
Sbjct: 64 DFPF--TIRVTSEVLESNGSSSMASACGGSLALMDAGVPISSAVAGVAVGLVTKSNP--E 119
Query: 165 SCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAK 224
+ + D+ ED D+D T+ G I +Q + + A
Sbjct: 120 KGEIEDYRLLTDILGIEDYNGDMDFKIAGTNKG-ITALQADIKLPGVPVKIIMEAIQQAT 178
Query: 225 DRIADLIKLQKDVISN 240
++++ IS
Sbjct: 179 VAKREILQTMSKTISK 194
>gi|332027278|gb|EGI67362.1| Exosome complex exonuclease RRP45 [Acromyrmex echinatior]
Length = 390
Score = 67.9 bits (164), Expect = 1e-09, Method: Composition-based stats.
Identities = 40/260 (15%), Positives = 81/260 (31%), Gaps = 27/260 (10%)
Query: 2 RLSGRQENQMR--EISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWI 59
RL GR+ + R +I + G C+V G T + + + + P R G I
Sbjct: 23 RLDGRKLLEPRLAKIYFSSNW-----GCCMVSLGHTKAVAQVSCDIQQPKASRP-NEGMI 76
Query: 60 TAEYGMLPRSTGNRVKREAVS-----GRQGGRSQEIQRMIGRALRSVVDLSALGSRQIII 114
+ P + + RQ + + + + L S+ ++ + I
Sbjct: 77 RINVELAPLAAQHFEGGRQSEAAILINRQLEKCFKDSKCVD--LESLCIVADKKVWNLRI 134
Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQV-----------LKGHVAA 163
D ++I DG A AL + + + + V
Sbjct: 135 DINIINHDGNLVDCASIATLAALMHFHRPDVTSTGEEIIIHPASEKDFLPLTLFHYPVCI 194
Query: 164 ISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAML-NL 222
G I+D Y E+ + + + + T + + + N
Sbjct: 195 SFITFKSGNTIMDPTYIEEKVGVAELTLGVNSYRELCSLHFDYLTKTMTVKDVISAVSND 254
Query: 223 AKDRIADLIKLQKDVISNEV 242
A + L++ K+ + +V
Sbjct: 255 AANYATKLVQQIKEAVIKDV 274
>gi|241608403|ref|XP_002405972.1| exosomal 3'-5' exoribonuclease complex, subunit Rrp43, putative
[Ixodes scapularis]
gi|215500728|gb|EEC10222.1| exosomal 3'-5' exoribonuclease complex, subunit Rrp43, putative
[Ixodes scapularis]
Length = 425
Score = 67.9 bits (164), Expect = 1e-09, Method: Composition-based stats.
Identities = 38/257 (14%), Positives = 72/257 (28%), Gaps = 25/257 (9%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R+ GR R + L+ + + G C+ G+T +L + E VP R G +
Sbjct: 24 RVDGRTSKDSRALRLSLGLDR---GCCVASLGETKVLAQVSSEVIVPKPNRP-NEGELFV 79
Query: 62 EYGMLPRSTGNRV-----KREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
+ P + + R R + +V + + +D
Sbjct: 80 NLELSPMAAPHFEAGRLGDFGVEIARLLERCVRDSHCVDLESLCIVAREKV--WSLRVDV 137
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHM----------EDCSNKFQLSQVLKGHVAAISC 166
V+ G A AL + D + + L + +S
Sbjct: 138 QVLNHRGNIAECASVATVAALLHFRRPDVTVVGTEVTVHDPREREPVPLHLHHYPYLMSF 197
Query: 167 GMLCG--YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAK 224
+VD E+ D + I + ++ LA
Sbjct: 198 AFYDEGKTVLVDPSELEERIADGLLTLGVNAHYEICTLHQRGCIIG--KEQVLLCSRLAC 255
Query: 225 DRIADLIKLQKDVISNE 241
R + + K+ I +
Sbjct: 256 VRAKAITEAIKEDIQRD 272
>gi|66824695|ref|XP_645702.1| hypothetical protein DDB_G0271396 [Dictyostelium discoideum AX4]
gi|60473889|gb|EAL71828.1| hypothetical protein DDB_G0271396 [Dictyostelium discoideum AX4]
Length = 217
Score = 67.9 bits (164), Expect = 1e-09, Method: Composition-based stats.
Identities = 31/223 (13%), Positives = 59/223 (26%), Gaps = 18/223 (8%)
Query: 16 LTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGNRVK 75
+ V GS V+ +T +L T + E S+
Sbjct: 1 MKIGVVSQGSGSSYVEMENTKVLCTIHGPRATQKTELFETAK-LNCELKYTTFSSTTEKI 59
Query: 76 REAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWV 135
+ ++ +I +++ + L I I V+ DG A+IT A +
Sbjct: 60 DYVENSKEKDL----SLLISQSIIGSIRLEKYPKTAIDIYILVLNDDGNVLVASITAATM 115
Query: 136 ALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTD 195
AL D M D + + M
Sbjct: 116 ALADAGVEMFDMV----------SSCSVSCTKDNRTLIDPTTLEETIPSSSTVLVAKMPS 165
Query: 196 SGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
I ++ + E + ++L D + + K +
Sbjct: 166 LNEITQIIQTGE---LQYTNVLECVDLCIDGCDKIYSIMKQNL 205
>gi|289613753|emb|CBI61594.1| unnamed protein product [Sordaria macrospora]
Length = 297
Score = 67.9 bits (164), Expect = 1e-09, Method: Composition-based stats.
Identities = 42/264 (15%), Positives = 79/264 (29%), Gaps = 35/264 (13%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+RL GR+ +Q R + LT G V G T +L A+ E VP + G T
Sbjct: 24 IRLDGREFDQYRPLELTFG---DEYGVANVSLGKTKILAKASAEVTVP-FADRPLDGIFT 79
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSV--------VDLSALGSRQI 112
+ P + + R + R++ + +R ++ +
Sbjct: 80 IATELSPMAAPHF-----EVNRPTETEVLLSRLLEKTVRRSGALDTESLCLVAGQKCWSV 134
Query: 113 IIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQL-------------SQVLKG 159
+D V+ DG AA AL + N
Sbjct: 135 RVDVHVLSHDGNLTDAACFAVVAALRHFRKPDTSMENGVLTVYTPAEREPVPLGWLHSPF 194
Query: 160 HVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQD--HFF 217
V G ++D D+ E+ + G I ++ A+ +
Sbjct: 195 CVTWSFFGDEGETALLDADWMEEQVRVASLTISLNRHGEICQI---AKLGGVPVEAVALL 251
Query: 218 AMLNLAKDRIADLIKLQKDVISNE 241
++A ++ D ++ +
Sbjct: 252 QCTSVALTKVKDFSTFLDGKLAED 275
>gi|148703325|gb|EDL35272.1| exosome component 8, isoform CRA_a [Mus musculus]
Length = 119
Score = 67.6 bits (163), Expect = 1e-09, Method: Composition-based stats.
Identities = 17/85 (20%), Positives = 27/85 (31%), Gaps = 3/85 (3%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE---EKVPMWIRNTKHGW 58
R GR+ + R ++ A+GS LVK G+T ++ E V R
Sbjct: 23 RPDGRELGEFRATTVNIGSISTADGSALVKLGNTTVICGVKAEFAAPPVDAPDRGYVVFL 82
Query: 59 ITAEYGMLPRSTGNRVKREAVSGRQ 83
+ P + Q
Sbjct: 83 SVPNVDLPPLCSSRFRTGPPGEEAQ 107
>gi|301109940|ref|XP_002904050.1| exosome complex exonuclease RRP43, putative [Phytophthora infestans
T30-4]
gi|262096176|gb|EEY54228.1| exosome complex exonuclease RRP43, putative [Phytophthora infestans
T30-4]
Length = 283
Score = 67.6 bits (163), Expect = 1e-09, Method: Composition-based stats.
Identities = 44/249 (17%), Positives = 81/249 (32%), Gaps = 15/249 (6%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+R R R + L V + A S LVK G T +LT L P + G +
Sbjct: 35 VRPDTRTIEATRAVQLQTDVIQTAASSSLVKLGKTSVLTAIKLAVGTPA-VATPDQGELA 93
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGS---RQIIIDCD 117
+ + P + Q SQ + + G + + LS + ++++D
Sbjct: 94 IQVHLSPLCSNRFTVGRPSEEAQSIGSQLTRVIAGSRVVEMESLSIVKGQSAWKLMVDVY 153
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCS----------NKFQLSQVLKGHVAAISCG 167
+ DG AA+T AL + + ++ A S
Sbjct: 154 GVDHDGNVLDAALTSIIAALKTLKLPATSVNEVDNVVSIVPDGDATPLRVEHGAYATSFA 213
Query: 168 MLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRI 227
M+ ++D E+ + + G + V + + + + +AK
Sbjct: 214 MVDDVVLIDPTSAEEGLSSAVFSLSYSTDGQLCGVHKAG-GSIVAPSVMQQCMTIAKRNT 272
Query: 228 ADLIKLQKD 236
+L KL
Sbjct: 273 KELAKLVDA 281
>gi|145520971|ref|XP_001446341.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124413818|emb|CAK78944.1| unnamed protein product [Paramecium tetraurelia]
Length = 227
Score = 67.6 bits (163), Expect = 1e-09, Method: Composition-based stats.
Identities = 49/238 (20%), Positives = 84/238 (35%), Gaps = 26/238 (10%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R GR QMR I + +GSCL K G T ++ T+ +
Sbjct: 5 RQDGRNLQQMRNIEFKLAIDLSVDGSCLYKQGLTEVICLVQGPRAK------TQSELLLI 58
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
EY + P S + S + + + +++ L G +I I VIQ
Sbjct: 59 EYSVSPFSNIESKR----SSKFDKDYSMFAENLKESFENLIILDENGKSEISISVCVIQN 114
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
DG +++A +AL D M+D + +++ G+ G IVDL E
Sbjct: 115 DGSSKSAVFNAITLALLDAGVSMKDF-------------LVSVTVGLDQGNLIVDLTQEE 161
Query: 182 DSTIDVDANF-VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
T + + I + + Q + LA + ++ + K+ I
Sbjct: 162 SKTAQGELTISYQSRKQKIDFYEL--KTLKLQQQEMDQLSKLAVSKADEIYQWMKEEI 217
>gi|313230944|emb|CBY18942.1| unnamed protein product [Oikopleura dioica]
Length = 441
Score = 67.6 bits (163), Expect = 1e-09, Method: Composition-based stats.
Identities = 37/265 (13%), Positives = 77/265 (29%), Gaps = 31/265 (11%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
RL GR +MR+ S+ G+C+ G+T L + P +R + G I
Sbjct: 23 RLDGRSYLEMRKCSIEFG---QEFGTCVASIGNTRALAHVSCSLDRPSEVRPS-EGKIVF 78
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMI-GRALRSVVDLSALGS--RQIIIDCDV 118
+ + P ++ + + + + ++ R + G + ++
Sbjct: 79 KVELPPLASPSFELNKKSAFAIDLNRLLEKAIVQSRCIDIEELCVRAGEQCWTLRVEVTA 138
Query: 119 IQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLD 178
+ +G A A AL + + + + V +
Sbjct: 139 LNHEGNLSDALCLAAMGALMHFKRPEV-TVDGHDVKIHTADEKEPTRLTLHHKPFCVTIG 197
Query: 179 YGEDSTIDVD----------------------ANFVMTDSGHIVEVQGSAERATFSQDHF 216
Y ED D D + + I ++ S
Sbjct: 198 YIEDGRTDSDGDRQKILVLDPVRQEEQVLSGIISIAINKHREICAMRVSGN-RELDCSQI 256
Query: 217 FAMLNLAKDRIADLIKLQKDVISNE 241
+ +A ++ DL L + I +
Sbjct: 257 LSCTKIAAAKVKDLQSLIESAIKKD 281
>gi|302837568|ref|XP_002950343.1| hypothetical protein VOLCADRAFT_90878 [Volvox carteri f.
nagariensis]
gi|300264348|gb|EFJ48544.1| hypothetical protein VOLCADRAFT_90878 [Volvox carteri f.
nagariensis]
Length = 311
Score = 67.6 bits (163), Expect = 2e-09, Method: Composition-based stats.
Identities = 17/71 (23%), Positives = 28/71 (39%), Gaps = 1/71 (1%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+RL GR + MR + L V A GS ++ G T ++ +E P G +
Sbjct: 18 VRLDGRSCHDMRPVELELGVIAQAAGSARLRMGATDVIVGVKVEVGSPSSSAP-NQGRLQ 76
Query: 61 AEYGMLPRSTG 71
P ++
Sbjct: 77 VTVEFSPCASP 87
>gi|212532847|ref|XP_002146580.1| exosome complex endonuclease 2/ribosomal RNA processing protein,
putative [Penicillium marneffei ATCC 18224]
gi|210071944|gb|EEA26033.1| exosome complex endonuclease 2/ribosomal RNA processing protein,
putative [Penicillium marneffei ATCC 18224]
Length = 294
Score = 67.6 bits (163), Expect = 2e-09, Method: Composition-based stats.
Identities = 45/262 (17%), Positives = 82/262 (31%), Gaps = 30/262 (11%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+R+ GR + R +S+T G V+ G T L+ + E P R + ++
Sbjct: 23 IRVDGRDADAFRPLSVTFG---EEYGHVKVQLGQTSLVVRISAEVSKPRDDRQSDGTFLI 79
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSV--------VDLSALGSRQI 112
A S + RQ + R++ R +R L I
Sbjct: 80 AMELTAMGSPA------WENLRQSEFETYVSRVLDRVIRHSNALDTESLCILKGKSCWNI 133
Query: 113 IIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNK----------FQLSQVLKGHVA 162
D V DG +A G L + + + + +
Sbjct: 134 RADVHVTNFDGNLIDSACIGIMAGLQHFRRPDIEVKDGQVTVFGINERVPVPLNITHKPL 193
Query: 163 AISCGMLCG--YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAML 220
AI+ I+D E+ D + ++G V SA + S
Sbjct: 194 AITFQSFHEGKVLILDATRKEEQASKGDLIIALNNTGETCAVYKSA-GSPVSALEVINKT 252
Query: 221 NLAKDRIADLIKLQKDVISNEV 242
NLA+ ++ +L + + ++
Sbjct: 253 NLAQQKVLELNGMISKALEADL 274
>gi|119188875|ref|XP_001245044.1| hypothetical protein CIMG_04485 [Coccidioides immitis RS]
Length = 298
Score = 67.6 bits (163), Expect = 2e-09, Method: Composition-based stats.
Identities = 34/265 (12%), Positives = 76/265 (28%), Gaps = 25/265 (9%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPM--WIRNTKHGW 58
+RL GR+ N++R + + + GS + G+T ++ +
Sbjct: 14 LRLDGRRWNELRLVQAQISTNPASSGSSYLAMGNTVVVCNVHGPAEGKRSETAGGGGGAV 73
Query: 59 ITAEYGMLPRSTGNRVKREAVSGRQGGRSQ--------EIQRMIGRALRSVVDLSALGSR 110
++ + + +R K+ ++G GG E+ + A + +
Sbjct: 74 VSVVVNIAGFAGVDRKKKSMMAGGGGGGGGGGDRQATTELSSALRDAFQPHLHTHIYPHS 133
Query: 111 QIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLK---------GHV 161
I + V+ +DG A I +AL D M + +
Sbjct: 134 TISVHVSVLSSDGSIFAACINACTLALVDAGIPMPGLLCACTVGMSGRASTPAAELAQSR 193
Query: 162 AAISCGMLCGYPIVDLDYGEDSTIDVDAN---FVMTDSGHIVEVQGSA---ERATFSQDH 215
L + + AN E Q + + +
Sbjct: 194 VGGINESLDPLLDLSRPEELELPHMTVANTNPVAGASEEGEEEEQMLSIVRMESGVHISY 253
Query: 216 FFAMLNLAKDRIADLIKLQKDVISN 240
+ + D + ++ V+ +
Sbjct: 254 LETVFAVGIDGCKQVREILNGVLKS 278
>gi|219115974|ref|XP_002178782.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217409549|gb|EEC49480.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 956
Score = 67.6 bits (163), Expect = 2e-09, Method: Composition-based stats.
Identities = 35/297 (11%), Positives = 68/297 (22%), Gaps = 64/297 (21%)
Query: 2 RLSGRQE-----NQMREISLTRRVSK-YAEGSCLVKFGDTHLLTTATLEE---------- 45
R GR +R + + GS L GDT +L TATL
Sbjct: 485 RADGRGLPGHGWKTIRPLKVQMPALPDTVHGSALFARGDTQVLCTATLGPPGDGQPMKDP 544
Query: 46 ----KVPMWIRNTKHGWITAEYGMLPRSTGNRVK--------REAVSGRQGGRSQEIQRM 93
P +++ Y LP + ++ + +
Sbjct: 545 YLATDNPRRVKSGAETTAAGYYSELPVGSLRFLRTQESLVSDMNSRKVKADKERTGDSGS 604
Query: 94 IGRALRSVVDLSALG-----------------------------SRQIIIDCDVIQADGG 124
+ R+ +
Sbjct: 605 LAEVKRAFLQYDFPPYATGTVPIGSQAHNRRAIGHGALAEKALLPVLPDAHDFPYAIRIS 664
Query: 125 TRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML-----CGYPIVDLDY 179
+ G+ C + + + G ++ + ++D+
Sbjct: 665 SEVTDSNGSSSMASVCGGTLALLDAGVPIQMPVAGVSVGLARDVDAGEAGVHRLLLDITG 724
Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
ED +D T G I Q ++ + L LA ++ +D
Sbjct: 725 TEDYYGGMDFKIAGTRKG-ITAFQLDVKQL-LPLEIVTEALQLACRGRNVILNEMQD 779
Score = 56.0 bits (133), Expect = 4e-06, Method: Composition-based stats.
Identities = 33/252 (13%), Positives = 67/252 (26%), Gaps = 37/252 (14%)
Query: 13 EISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT-----------KHGWIT 60
I +++ S + + G T +L T + P +
Sbjct: 62 PIQFGTGKLARLTHSSVVGQGGSTVVLATV--AHQPPDTPNGDQNNAASTFLTVDYRQRY 119
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
G +P + G R R I RALR ++ ++ + C V
Sbjct: 120 HGVGKIPSNGGRRDNAV-----LSTPEVLASRAIDRALRPLIRTEDAIDGRLHVTCSVQS 174
Query: 121 AD----------------GGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAI 164
+ + + + L +
Sbjct: 175 YEVFASEVDLRQDGLLDEKDNDATNASHSTHPVAMALNTAAAALLQQGHLTQPVAATVLA 234
Query: 165 SCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAE--RATFSQDHFFAMLNL 222
G D + + + + T GH+V ++ ++ S+ H +L L
Sbjct: 235 VAAHGDGVVWQDPVPEQLADSYGELLYAGTADGHVVMLEWTSHRLATGLSESHMTQLLEL 294
Query: 223 AKDRIADLIKLQ 234
A+ I ++ L
Sbjct: 295 AQTSIRPVLDLL 306
>gi|124514000|ref|XP_001350356.1| exosome complex exonuclease, putative [Plasmodium falciparum 3D7]
gi|23615773|emb|CAD52765.1| exosome complex exonuclease, putative [Plasmodium falciparum 3D7]
Length = 477
Score = 67.2 bits (162), Expect = 2e-09, Method: Composition-based stats.
Identities = 26/255 (10%), Positives = 70/255 (27%), Gaps = 18/255 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+RL GR R + + K G + G T ++ T E P + +
Sbjct: 19 IRLDGRTFEDSRNVCI--NFLKD-YGHVEISIGFTKVICKITSEIVKPHDRKLKEGILKI 75
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
+ + + + G + I +++
Sbjct: 76 NLDIDNFIEDNENSDNMSDECLEIKNIIDRVLKTSNIINFESLCIIPGKKVWCICINIMV 135
Query: 121 ADGGTRTAAIT-----GAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAI---------SC 166
+ V + + + + + +I +
Sbjct: 136 IENDGNLTDACYLSAYCGLVHFKNHQVRVIKNGDIIIDKEEINYSPLSILNSPIVTTFAY 195
Query: 167 GMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226
++D E+ + + + +G+++ + + H + +AK R
Sbjct: 196 YEEHDVCLIDPCLHEEEFMSSKISIALNKNGNLISLLKPG-GIPLACSHIMESIEIAKKR 254
Query: 227 IADLIKLQKDVISNE 241
I ++K+ +D + +
Sbjct: 255 ILTILKILEDTLEED 269
>gi|167465303|ref|ZP_02330392.1| ribonuclease PH [Paenibacillus larvae subsp. larvae BRL-230010]
Length = 71
Score = 67.2 bits (162), Expect = 2e-09, Method: Composition-based stats.
Identities = 26/56 (46%), Positives = 35/56 (62%)
Query: 184 TIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
VD N VMT GH VEVQG+ E + FS+D ML LA++ I LI+LQ++ +
Sbjct: 2 QAHVDMNVVMTGRGHFVEVQGTGEESPFSKDDLDRMLGLAEEGILRLIELQREALG 57
>gi|197127157|gb|ACH43655.1| putative exosome component 5 [Taeniopygia guttata]
Length = 224
Score = 67.2 bits (162), Expect = 2e-09, Method: Composition-based stats.
Identities = 28/237 (11%), Positives = 64/237 (27%), Gaps = 29/237 (12%)
Query: 4 SGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEY 63
GR +R S + +GS GDT +L + + +
Sbjct: 12 DGRCR--LRRFSCELGLLSRPDGSAAFLQGDTSVLAGLYGPAEAKISKELPDRAALDVLL 69
Query: 64 GMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADG 123
G + ++++ + +VV I + V+ G
Sbjct: 70 RPKVGL-------------PGVLERSREQLLQQTCEAVVLGVLHPRTAISLVLQVLSDAG 116
Query: 124 GTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDS 183
+ + A +AL D + + G ++D ++
Sbjct: 117 SLLSCCLNAACMALLDAGLPLSALFCGVTCAL------------QPDGAILLDPTARQEQ 164
Query: 184 TIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
F + + V + + + + S L A+ + + +D +
Sbjct: 165 EARAVLTFAIASADRKVLMVTT--KGSCSVQEMQQCLAAAQRAADTIFQFYRDSVRR 219
>gi|170577726|ref|XP_001894115.1| 3' exoribonuclease family, domain 1 containing protein [Brugia
malayi]
gi|158599437|gb|EDP37044.1| 3' exoribonuclease family, domain 1 containing protein [Brugia
malayi]
Length = 306
Score = 67.2 bits (162), Expect = 2e-09, Method: Composition-based stats.
Identities = 42/273 (15%), Positives = 72/273 (26%), Gaps = 32/273 (11%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE-EKVPMWIRNTKHGWI 59
+R GR R I + V GS V+ G T LL E V + + +
Sbjct: 21 LRADGRGPLDYRPIIVQTGVLATTNGSARVQIGSTDLLIGVKAELISVDTAVYRNRLNFF 80
Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119
R E + LS + + ++ +D ++
Sbjct: 81 VDCSANATPLFAGRGGEEFADELSAALDAAYDNNYVLPDLKKLILSPMHAWKLFVDIVLL 140
Query: 120 QADGGTRTAAITGAWVALHDCLQHME----DCSNKFQLSQVLKGHVAAI----------- 164
Q DG AA G AL D K+ + V +
Sbjct: 141 QCDGNVIDAAGLGVKAALKDTEISKVIVRPADEGKYTIDLPDDNTVWKLDTSRVPLFVSV 200
Query: 165 ----------------SCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAER 208
+C + V + D + + + G I+
Sbjct: 201 NRLGTAKIVDNSLTEEACTRTSVWIAVAPQFVSDINHNQNNQCAVKRDGSIITFMRQCGG 260
Query: 209 ATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
T D M+++ + L + + NE
Sbjct: 261 GTLEIDSLEEMISIGLKAVHQLHEALNQRLMNE 293
>gi|34851927|ref|XP_226471.2| PREDICTED: exosome component 6 [Rattus norvegicus]
gi|109508906|ref|XP_001077520.1| PREDICTED: exosome component 6 [Rattus norvegicus]
Length = 312
Score = 67.2 bits (162), Expect = 2e-09, Method: Composition-based stats.
Identities = 39/245 (15%), Positives = 78/245 (31%), Gaps = 28/245 (11%)
Query: 6 RQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK---------- 55
R ++R + + A+GS ++ G T +L + + R
Sbjct: 71 RDPTRLRPVYARAGLLSQAKGSAYLEAGGTKVLCAVSGPRQAEGGERGGGPAGAGGEAPA 130
Query: 56 --HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQII 113
G + ++ P S R + +E+ + AL V L Q+
Sbjct: 131 ALRGRLLCDFRRAPFSGRRRRAPQG-----SSEDRELGLALQEALEPAVRLGRYPRAQLE 185
Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP 173
+ +++ G AA+T A +AL D M D LS + G +
Sbjct: 186 VSALLLEDGGSALAAALTAAALALADAGVEMYDLVVGCGLSL---------TPGPSPTWL 236
Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
+ E+ + +M + + GS E + + + L + L +
Sbjct: 237 LDPTRLEEEHSEAGLTVALMPVLNQVAGLLGSGEGG--QTESWTDAVRLGLEGCQRLYPV 294
Query: 234 QKDVI 238
+ +
Sbjct: 295 LQQCL 299
>gi|326473180|gb|EGD97189.1| exosome complex endonuclease 1/ribosomal RNA processing protein
[Trichophyton tonsurans CBS 112818]
Length = 286
Score = 67.2 bits (162), Expect = 2e-09, Method: Composition-based stats.
Identities = 30/269 (11%), Positives = 69/269 (25%), Gaps = 46/269 (17%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+RL GR+ N++R + + + GS + G+T +L T +
Sbjct: 14 LRLDGRRWNELRLLQAQISTNPASSGSSYLSMGNTAVLCTVHGPAEGKRS---------- 63
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
+ + G + E+ + A + + I + V+
Sbjct: 64 ---ETAGAAAQKKKSTTGSGGGDRQATTELANSLRDAFQPHIHAHLYPRSTISVHVSVLS 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC---------- 170
+DG A + +AL D M + + A++
Sbjct: 121 SDGSLFAACLNACTLALVDAGIPMPGLLCACTVGMSGRASTPAVTAESAQIGGINESLDP 180
Query: 171 -------GYPIVDLDYGEDSTIDVDANFV-------------MTDSGHIVEVQGSAERAT 210
+ ++ D ++ + V +
Sbjct: 181 LLDISAPEEVELPYMTVANTNPMPDITVPKDGEDEEDDEYDAENENQMLSIVHMDS---G 237
Query: 211 FSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
+ M + D ++ V+
Sbjct: 238 VHVSYLETMFAVGIDGCKQTREILNGVLK 266
>gi|255075435|ref|XP_002501392.1| predicted protein [Micromonas sp. RCC299]
gi|226516656|gb|ACO62650.1| predicted protein [Micromonas sp. RCC299]
Length = 291
Score = 67.2 bits (162), Expect = 2e-09, Method: Composition-based stats.
Identities = 52/260 (20%), Positives = 84/260 (32%), Gaps = 33/260 (12%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+R+ GR R +S +G C V+ GDT +L + + + P R G IT
Sbjct: 25 LRVDGRGPFDTRPVSYRFGP---KDGMCEVQLGDTRVLAVVSAKLEPPSGARG-NEGTIT 80
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALG--------SRQI 112
P ++ N GR G ++QE+ ++ RA+R + +
Sbjct: 81 INVEFSPMASPNFEP-----GRPGEQAQELALVLERAIRETGAVDVESLCVLAGRRVWHV 135
Query: 113 IIDCDVIQADGGTRTAAITGAWVALHDCLQHM------------EDCSNKFQLSQVLKGH 160
D V+ A G AA A AL + + + L
Sbjct: 136 RCDVHVLDACGNIAGAASLAADAALLSFRRPEATVSPDTQLITVHPADVREPVPLALHHL 195
Query: 161 VAAISCGMLCGYPIV---DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFF 217
AI+ G + D E+ I + V+ + V+ E A
Sbjct: 196 PVAITFGYFAEQDGLVIADPTVNEEMVIGSELVVVLNAHDELCAVRYGGEVA-VKPSEIS 254
Query: 218 AMLNLAKDRIADLIKLQKDV 237
+ +A DL K K
Sbjct: 255 RCVRIASRISKDLTKDLKKA 274
>gi|224031563|gb|ACN34857.1| unknown [Zea mays]
Length = 149
Score = 67.2 bits (162), Expect = 2e-09, Method: Composition-based stats.
Identities = 25/156 (16%), Positives = 49/156 (31%), Gaps = 13/156 (8%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R GR NQ+R + T A GS GDT +L + N + I
Sbjct: 7 RADGRNPNQLRPFTCTGNPLHRAHGSARWAQGDTVVLAAVYGPKSGTRKGENPEKASIEV 66
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
+ +G+ G + +E + + R L+S+ L+ + + V+ A
Sbjct: 67 V-------------WKPKTGQIGRQEREYEMTLKRTLQSICLLTVHPNTTTSVVLQVMFA 113
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVL 157
+ +++ + +
Sbjct: 114 WLAAAMLLLICFCCSIYSSTIAVGCVWCNVARCIIY 149
>gi|94469342|gb|ABF18520.1| exosomal 3'-5' exoribonuclease complex subunit Rrp41-like protein
[Aedes aegypti]
Length = 307
Score = 66.8 bits (161), Expect = 2e-09, Method: Composition-based stats.
Identities = 37/241 (15%), Positives = 87/241 (36%), Gaps = 12/241 (4%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R GR++N+ R+ + V A+GS ++ G+T ++ + ++P + G +
Sbjct: 42 RKCGRKDNESRKYFMKLGVVSTAKGSTYLELGNTKVIVSVFDPREIPKQNKFRALGELYC 101
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
++ P + +R + + + + + +AL+ VV + QI I +V++
Sbjct: 102 DFKFSPFACIHRKNPQTDAEERS-----LAAAMTKALQPVVCRHLFPNFQIDIFANVLED 156
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
DG A IT A +AL D M D ++ + +
Sbjct: 157 DGSVLAAVITAAGLALSDATISMFDIVTASTVAVIEDKIYLDPTLAEERLCLEGGKSGNH 216
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
+ + + I+ + S + + ++ + + ++ +
Sbjct: 217 GVITLAKLH-TLDQTSEIL------QAGDISLEKLKEACQRLNEANNEIAPVVQQMLVGK 269
Query: 242 V 242
V
Sbjct: 270 V 270
>gi|330981096|gb|EGH79199.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas syringae
pv. aptata str. DSM 50252]
Length = 288
Score = 66.8 bits (161), Expect = 2e-09, Method: Composition-based stats.
Identities = 22/140 (15%), Positives = 52/140 (37%), Gaps = 10/140 (7%)
Query: 101 VVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGH 160
++ + + I + ++ +++G + A++ GA +AL D M+ + V +G
Sbjct: 2 MLPGADVFPYTIRVVSEITESNGSSSMASVCGASLALMDAGVPMKAPVAGIAMGLVKEGE 61
Query: 161 VAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAML 220
A + ED D+D T G + +Q + +++ L
Sbjct: 62 KFANLTD---------ILGDEDHLGDMDFKVAGTSKG-VTALQMDIKIKGITEEIMEIAL 111
Query: 221 NLAKDRIADLIKLQKDVISN 240
A + +++ +I
Sbjct: 112 GQALEARLNILGQMNQIIGQ 131
>gi|302404108|ref|XP_002999892.1| exosome complex exonuclease RRP41 [Verticillium albo-atrum
VaMs.102]
gi|261361394|gb|EEY23822.1| exosome complex exonuclease RRP41 [Verticillium albo-atrum
VaMs.102]
Length = 155
Score = 66.8 bits (161), Expect = 2e-09, Method: Composition-based stats.
Identities = 30/141 (21%), Positives = 51/141 (36%), Gaps = 1/141 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+R+ GR+ N++R + R A+GS ++ G T ++ T + P
Sbjct: 13 LRVDGRRWNELRRLQAQIRTQDAADGSSYLEIGHTKVMCVVTGPTE-PQRRGPAGGQSKD 71
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
A + G GR R E++ + +A S + I I V+
Sbjct: 72 AAVNVSIVVAGFSSVDRRKYGRNDKRISELEATVSKAFASTLHTHLFPHSSIYISLHVLS 131
Query: 121 ADGGTRTAAITGAWVALHDCL 141
DG A + +AL D
Sbjct: 132 QDGSLLAALLNATTLALVDAG 152
>gi|62858563|ref|NP_001017016.1| exosome complex component MTR3 [Xenopus (Silurana) tropicalis]
gi|123892820|sp|Q28F19|EXOS6_XENTR RecName: Full=Exosome complex component MTR3; AltName: Full=Exosome
component 6; AltName: Full=mRNA transport regulator 3
homolog
gi|89269970|emb|CAJ81566.1| exosome component 6 [Xenopus (Silurana) tropicalis]
gi|134024282|gb|AAI36081.1| rarg protein [Xenopus (Silurana) tropicalis]
Length = 270
Score = 66.8 bits (161), Expect = 2e-09, Method: Composition-based stats.
Identities = 29/150 (19%), Positives = 56/150 (37%), Gaps = 6/150 (4%)
Query: 5 GRQENQMREISLTRRVSKYAEGSCLVK--FGDTHLLTTATLEEKV-PMWIRNTKHGWITA 61
GR ++ R + + + A+GS ++ G T +L + R G +
Sbjct: 34 GRGPSEPRPVFVRAGLLSQAKGSAYLEAGSGGTKVLCAVHGPRERGMGGERAETRGRLLC 93
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
+ P +R + S G ++ + +L V L ++I+ V++
Sbjct: 94 DLRWAPF---SRRGPWSGSCPAGPSPRQAGLQLQESLEPAVRLDRYPRAEVIVWVLVLED 150
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKF 151
G AA++ A +AL D M D +
Sbjct: 151 RGSALPAAVSCASLALADAGIEMFDLALGC 180
>gi|145346010|ref|XP_001417490.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144577717|gb|ABO95783.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 240
Score = 66.8 bits (161), Expect = 2e-09, Method: Composition-based stats.
Identities = 44/246 (17%), Positives = 73/246 (29%), Gaps = 26/246 (10%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R R + R + + V A GS V+ GDT + + G +
Sbjct: 8 REDARADAHCRALVVALDVVPAAAGSAYVELGDTKASCAVYGPRRGRAELAGVDRGTLDV 67
Query: 62 EYGMLPRSTGNR-----VKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
+ P +TG R + A + R + AL + V + Q+
Sbjct: 68 DAYRAPFATGARALDGANRARARGRGARTADDGLARTVKEALSASVLTESFPKTQVDACV 127
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
V+ A GG A + A AL D V+A C ++D
Sbjct: 128 TVLDARGGEAVACVLAASAALARAGVACRDL-------------VSACECARAGERMMLD 174
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQ---DHFFAMLNLAKDRIADLIKL 233
E T D S ++ A+ TF + D L+ +
Sbjct: 175 PTREEIETSDGMVFLAQMSS-----MEAYAKTETFGRWNADETERALDACAAGCNRFDAV 229
Query: 234 QKDVIS 239
++ +
Sbjct: 230 LREALR 235
>gi|168045848|ref|XP_001775388.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162673333|gb|EDQ59858.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 256
Score = 66.8 bits (161), Expect = 3e-09, Method: Composition-based stats.
Identities = 40/250 (16%), Positives = 74/250 (29%), Gaps = 28/250 (11%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R GR +Q+R +SL+R + A GS +T +L +
Sbjct: 19 RADGRSASQLRPLSLSRGLLTRAHGSATWSQENTTVLAAVYGPK---------PAAMKKE 69
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
R K + + ++ R+L ++ + + I + VI
Sbjct: 70 NAERAIIEVVWRAKSGLSGSYEKDA----EVVVRRSLEYIILTALHPNTAISVILQVIND 125
Query: 122 DGGTRTAAITGAWVALHDCLQH---------MEDCSNKFQLSQVLKGHVAAISCGMLCGY 172
DG A+ A AL D + K + +
Sbjct: 126 DGSLLACAMNAACAALVDAGIPLNGLLSAVSCGVTHDGQVFLDPTKPEEQKCKAYVSFVF 185
Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
P L + DVD V + G + V A + +F+ + + A + +
Sbjct: 186 PSRRLSAVPELPADVDGEPV--EYGILTSVTRGAMEV----EEYFSCVENCRAAAAKVSE 239
Query: 233 LQKDVISNEV 242
+ I +
Sbjct: 240 FSRSSIEQSL 249
>gi|326430537|gb|EGD76107.1| hypothetical protein PTSG_00813 [Salpingoeca sp. ATCC 50818]
Length = 219
Score = 66.4 bits (160), Expect = 3e-09, Method: Composition-based stats.
Identities = 27/236 (11%), Positives = 62/236 (26%), Gaps = 24/236 (10%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R+ GR+ ++R + + +GS FGD+ ++ VP+ +
Sbjct: 5 RVDGRKAMELRPMQCDLALLDKPDGSASFSFGDSSVMAAVYGPRDVPLSREKHDRSTVEV 64
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
+ + + + ++ + I + +
Sbjct: 65 A--------------WHSAPDNEQGAALQSHLTEFVVNALASIHDFPRSAIRVVIQELNN 110
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
DGG AI +AL D + + V + + V +
Sbjct: 111 DGGMLACAINATCLALMDAGISLTAMFAAASCAVVDGQLILDPTLIEQNKANAVVVTGAC 170
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
V ++ V + S + +L + A + +
Sbjct: 171 KQASKV-------NAAEFVALHSSG---PCAPKQMVTVLEAVESATAAVAAFLRTA 216
>gi|300121304|emb|CBK21684.2| unnamed protein product [Blastocystis hominis]
Length = 273
Score = 66.4 bits (160), Expect = 3e-09, Method: Composition-based stats.
Identities = 38/256 (14%), Positives = 81/256 (31%), Gaps = 21/256 (8%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAE--GSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW 58
+R+ GR + R+I++ + S +V GDT + T E V + + G
Sbjct: 20 IRVDGRNLTEFRDIAID---LSRTDSQSSSIVSIGDTKV-CAITNCEIVSGYSDHPNEGL 75
Query: 59 ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGS---RQIIID 115
T + P + R + + + V L + +
Sbjct: 76 FTIHVNVTPMGGREYTTELSDDVRFELQRVLERSLKDNNTVDVESLCIIPGEKVFSVHCY 135
Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHM----------EDCSNKFQLSQVLKGHVAAIS 165
++I +G AA+ A +L + + + + L +IS
Sbjct: 136 VNIIDNNGNIFDAAVLAATSSLCYFRRPDYSINGTQVRIYAPNEQEPVPLCLHYQPISIS 195
Query: 166 CGMLCGYPI-VDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAK 224
+L +D + E++ + + V+ G + V S+ +A
Sbjct: 196 FCLLDSELTLLDPNEREEAVKEGMISLVLNAFGELCGVHFLG-GIPVSESLLLRCGQIAS 254
Query: 225 DRIADLIKLQKDVISN 240
+ D+ + K +
Sbjct: 255 AKANDISAILKKALEK 270
>gi|67474914|ref|XP_653189.1| exosome complex exonuclease [Entamoeba histolytica HM-1:IMSS]
gi|56470120|gb|EAL47803.1| exosome complex exonuclease, putative [Entamoeba histolytica
HM-1:IMSS]
Length = 265
Score = 66.4 bits (160), Expect = 3e-09, Method: Composition-based stats.
Identities = 38/247 (15%), Positives = 67/247 (27%), Gaps = 19/247 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+R+ R+ ++ RE+S GS G++ L +E P R + +
Sbjct: 12 IRIDARRLDEFREVS----FVCREPGSVETHIGNSKALGECVVEPVCPGRSRPDQGIFNI 67
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI- 119
+ + R + G+ E + RA+ + G I V
Sbjct: 68 RVNFLEMANPNFYDSRGPRDLIEIGKVVERGLLSTRAIDVDGLVIIRGKLVWKITVCVHI 127
Query: 120 -QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQ-----------VLKGHVAAISCG 167
G A AL ++ + +
Sbjct: 128 INDCGNLMDLVSITAISALLTAVRREVQICGTDVKILTPEERKPVPLAIHHIPITVSFGI 187
Query: 168 MLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRI 227
G P++D E+S + G + VQ S S + A +
Sbjct: 188 TESGVPLLDPSEREESVCKSHLTIAINKEGEVCAVQKSG--TPISMKVIQKCCDTALSKA 245
Query: 228 ADLIKLQ 234
LIK
Sbjct: 246 KMLIKFI 252
>gi|225708764|gb|ACO10228.1| Exosome complex exonuclease MTR3 [Caligus rogercresseyi]
Length = 278
Score = 66.4 bits (160), Expect = 3e-09, Method: Composition-based stats.
Identities = 40/246 (16%), Positives = 86/246 (34%), Gaps = 16/246 (6%)
Query: 2 RLSG-RQEN-QMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKH-GW 58
RL G R+++ +R + + ++GS ++ G T +L + +V + + G
Sbjct: 37 RLDGEREKDISVRPLFCEVGILTQSKGSAYLERGRTKVLASVFGPREVSKKLDFSSTAGS 96
Query: 59 ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDV 118
+ EY P ++ GR + +++ + + LRS V L +I + V
Sbjct: 97 LNVEYKEAPFAS-------RSDGRGEAKERDVGLFLAQTLRSTVCLHLYPKSRIDVCITV 149
Query: 119 IQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLD 178
++ DG AIT A +AL D ++ D + ++
Sbjct: 150 LEDDGSAIPTAITAAALALSDASINLFDLVIGASVKLCGGKALSYPCKAEEGIQAHGSNA 209
Query: 179 YGEDSTIDVDANFVMTDSGHIVEVQGSA--ERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
I I + E + S +++ A+ + + +
Sbjct: 210 EENQGHI---IIGYQPSLEQIAALLQDGVLESSALS-SQMRSLIKAAEATLPSVQECLMR 265
Query: 237 VISNEV 242
+S ++
Sbjct: 266 SLSEKL 271
>gi|258596889|ref|XP_001349602.2| 3' exoribonuclease, putative [Plasmodium falciparum 3D7]
gi|254688464|gb|AAC71872.3| 3' exoribonuclease, putative [Plasmodium falciparum 3D7]
Length = 275
Score = 66.4 bits (160), Expect = 3e-09, Method: Composition-based stats.
Identities = 37/239 (15%), Positives = 82/239 (34%), Gaps = 12/239 (5%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R++ R+ N++R++ + + SC G+T +LTT N + T
Sbjct: 32 RINNRKNNEIRDMFIKLGEDENFGSSCFYSLGNTKILTTVYGP--------NPDSKYATY 83
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
G + + + + +I + +++ L I I C +IQ
Sbjct: 84 SKGKVFLDVKSLNINTIGASDRQRDDDIKSLLIE-CISNIILLEKYPQCSIKIKCLIIQD 142
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
DGG +A +T +AL M+D ++ + V ++ + + Y
Sbjct: 143 DGGCLSATLTCISLALIKAQIQMKDIIISININS-IICPVTKKMYHLVDLDGMEEKYYQS 201
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
++ + + + G+ + F+ + + + L K V+
Sbjct: 202 KYEMNSITLGICLNLKTVCFYHGTG--SFFNSKTLAEITSYGECACKSLGSEIKKVLKQ 258
>gi|196014350|ref|XP_002117034.1| hypothetical protein TRIADDRAFT_61054 [Trichoplax adhaerens]
gi|190580256|gb|EDV20340.1| hypothetical protein TRIADDRAFT_61054 [Trichoplax adhaerens]
Length = 240
Score = 66.4 bits (160), Expect = 3e-09, Method: Composition-based stats.
Identities = 38/230 (16%), Positives = 76/230 (33%), Gaps = 9/230 (3%)
Query: 13 EISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGN 72
+ A GS ++ +T ++ +V + E S
Sbjct: 13 RLVCRTGAVSQAVGSAYIELRNTKIICAVYGPREVAKKQEFNIQATVACELKFATFSCRR 72
Query: 73 RVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITG 132
R + S +E ++I +AL+ VV L QI I V+Q DG AIT
Sbjct: 73 RRRHIQDSQ-----EKEYSQIIVQALQPVVRLDKYPKSQIDIFITVLQNDGSVLGGAITA 127
Query: 133 AWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFV 192
A VAL D + D + L Q+ + + G + + + +V
Sbjct: 128 ASVALADSGIEIFDVAIGCCLRQIGDLSLIDPTYLEEEGRLNNEEEDEIVTNANVTIAL- 186
Query: 193 MTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNEV 242
+ + + + E D ++ + + + ++ ++ +
Sbjct: 187 LPSLNQVSALIMNGE---LDVDSTQRIIKDCLEGCIRIYPVVRECLTKSL 233
>gi|291412161|ref|XP_002722356.1| PREDICTED: exosome component 5-like [Oryctolagus cuniculus]
Length = 235
Score = 66.4 bits (160), Expect = 3e-09, Method: Composition-based stats.
Identities = 31/228 (13%), Positives = 62/228 (27%), Gaps = 27/228 (11%)
Query: 11 MREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRST 70
+R + + + +GS GDT +L +V +
Sbjct: 28 LRHFACEQNLLSRPDGSASFLQGDTSVLAGVYGPAEV---------KVSKEIFNKATLEV 78
Query: 71 GNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAI 130
R K G + +RMI +VV + I + ++ G +
Sbjct: 79 ILRPKIGL----PGVAEKNRERMIRNTCEAVVLGALHPRTSITVVLQIVSDAGSLLACCL 134
Query: 131 TGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDAN 190
A +AL D M + G ++D ++
Sbjct: 135 NAACMALVDAGVPMRALFCGVTCAL------------DSDGTLVLDPTAKQEKEARAVLT 182
Query: 191 FVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
F + + S + +S L A+ + + +D +
Sbjct: 183 FALDSVDRKLL--MSTTKGLYSDAELQQCLAAAQTASQHVFRFYRDSL 228
>gi|320591825|gb|EFX04264.1| exosome subunit rrp45 [Grosmannia clavigera kw1407]
Length = 294
Score = 66.4 bits (160), Expect = 3e-09, Method: Composition-based stats.
Identities = 39/264 (14%), Positives = 74/264 (28%), Gaps = 36/264 (13%)
Query: 2 RLSGRQENQMREISLTRRVSKYAE--GSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWI 59
RL GR R I LT + G V+ G+T ++ AT E P R G
Sbjct: 24 RLDGRSFEDYRPIDLTLG-----DEFGVADVRIGNTRVVAKATAEVTTPFSDRPFD-GIF 77
Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSV--------VDLSALGSRQ 111
+ P ++ + +GR + R++ + +R +
Sbjct: 78 NIVTELSPMASPSF-----EAGRPSEAEVLLSRILEKTIRRSGALDTESLCLAAGNKCWS 132
Query: 112 IIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQ-LSQVLKGHVAAISCGMLC 170
+ +D V+ +G A+ AL + N + + +S
Sbjct: 133 VRVDVHVMSHEGNLVDASCLAVVAALRHFRKAETSIENGVLTVYTPAEREPVPLSWLHSP 192
Query: 171 GYPIVDLDYGEDSTIDVD-------------ANFVMTDSGHIVEVQGSAERATFSQDHFF 217
+D+ I + + G I +V
Sbjct: 193 FCVTFSFFEADDTEITLLDASLLEEQTRVSSCTISINRHGEICQVAKLG-GTPVEAVTIL 251
Query: 218 AMLNLAKDRIADLIKLQKDVISNE 241
++A + DL + +
Sbjct: 252 KCTSIALAKAKDLSVFLDKKLEED 275
>gi|320163129|gb|EFW40028.1| polymyositis/scleroderma autoantigen 1 [Capsaspora owczarzaki ATCC
30864]
Length = 313
Score = 66.4 bits (160), Expect = 4e-09, Method: Composition-based stats.
Identities = 41/271 (15%), Positives = 79/271 (29%), Gaps = 41/271 (15%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAE-GSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWI 59
+R+ GR R I + + E G V+ G T ++ + E P + G +
Sbjct: 22 LRVDGRGVYDFRRIRI----AYQPERGHVEVQLGRTRVMVQVSCELTKP-FPDRPAEGAV 76
Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGR------ALRSVVDLSALGS--RQ 111
+ P ++ GR ++ E+ RM+ R A+ + G
Sbjct: 77 QFNVELSPMASPAFEP-----GRPSEQAIELSRMVERVVKDSNAIDTTSLCVISGEAVWN 131
Query: 112 IIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNK----------FQLSQVLKGHV 161
I +D + DG A A L + + + V +
Sbjct: 132 IRVDLHALDHDGNLSDALCMAALAGLIHFRKPEVSMPSLSSGDESVAGNLIIHDVREREP 191
Query: 162 AAISCGMLCGYPI-----------VDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERAT 210
+S + VD + E+ + M + V
Sbjct: 192 LPLSVHHMPLCVTFAFLDDGEHMVVDPTFQEERVAEGYLIVAMNIHREVCAVHKHG-SVL 250
Query: 211 FSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
+A ++A++ +L + I E
Sbjct: 251 LDASQISRCTKIAAIKVAEMTELLQKSIDEE 281
>gi|194766922|ref|XP_001965573.1| GF22565 [Drosophila ananassae]
gi|190619564|gb|EDV35088.1| GF22565 [Drosophila ananassae]
Length = 412
Score = 66.4 bits (160), Expect = 4e-09, Method: Composition-based stats.
Identities = 38/252 (15%), Positives = 70/252 (27%), Gaps = 20/252 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAE-GSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
RL GR+ N+ R++ LT A+ G+ V G+T +L + + VP R +
Sbjct: 29 RLDGRRSNECRDVQLTFG----ADWGTVAVTLGETKVLAQVSSDIGVPTTARANEGKLQL 84
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDL--SALGSRQIIIDCDV 118
E R L + + +D +V
Sbjct: 85 NVNIGGVAFLDEAQSTHDQRFLTLNSLLERTFRSSRCLDLESLCVAAEQHVWCVRVDINV 144
Query: 119 IQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLK----------GHVAAISCGM 168
+ DG A+ AL + + K + +++ +
Sbjct: 145 LNHDGNLYDASTIATLAALMHYRRPDVTFAEDELRIYTEKEREFQPLLFLHYPVSVTYCI 204
Query: 169 LC--GYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226
PIVD E++ D + + T + N A
Sbjct: 205 YKSSSQPIVDPSLLEENAADSVIVLSFNSYKELCTLNAGGSAPTNVRTIMQCARNAATRS 264
Query: 227 IADLIKLQKDVI 238
L+ + +
Sbjct: 265 -KALVDFIRKAL 275
>gi|303284571|ref|XP_003061576.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226456906|gb|EEH54206.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 318
Score = 66.4 bits (160), Expect = 4e-09, Method: Composition-based stats.
Identities = 41/272 (15%), Positives = 64/272 (23%), Gaps = 37/272 (13%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFG----DTHLLTTATLEEKVPMWIRNTKH 56
MR GR RE++L V A GS + G T ++ T + P
Sbjct: 19 MRNDGRTREDYRELTLDLGVIPQATGSARARLGLDAWSTDVIVTVKADIGAPSAEHPGDG 78
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQ--------------GGRSQEIQRMIGRALRSVV 102
A T + + G + G AL
Sbjct: 79 RLRCAVELSSASDTAYGGRGGEARATELSRALERSLLGATAGSSASLSAHGEGCALDMSA 138
Query: 103 DLSALGSRQIIIDCDVIQADGG--TRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGH 160
G I+ D + A AL D +
Sbjct: 139 LGIQRGKSCWILQVDGLVLADDGNVLDALSMATRAALFDAKIPKVTAVAGPNPDDPAELE 198
Query: 161 ----------------VAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQG 204
++ + + IVD E+S D + +G + V
Sbjct: 199 LDDDPEECSRLDVSGVPVIVTLTRVGKHSIVDATKDEESMRDPRLCVGVDATGKVRSVGK 258
Query: 205 SAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
+ AM A + LI +
Sbjct: 259 RG-GGGIDLNAMCAMTRTACECGKQLIAALDE 289
>gi|326918964|ref|XP_003205754.1| PREDICTED: exosome complex exonuclease RRP45-like, partial
[Meleagris gallopavo]
Length = 403
Score = 66.0 bits (159), Expect = 4e-09, Method: Composition-based stats.
Identities = 39/233 (16%), Positives = 70/233 (30%), Gaps = 21/233 (9%)
Query: 26 GSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGNRVKREAVS----- 80
G C+V+ G T +L + E VP G + + P +
Sbjct: 7 GCCVVELGKTRVLGQVSCEL-VPPKPNRATEGILFCNLELSPMAAPGFEPGRQSELLVKV 65
Query: 81 GRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVALHDC 140
R R + I VV + QI +D ++ DG AA VAL
Sbjct: 66 NRLIERCLRNSKCIDTESLCVVAGEKV--WQIRVDLHLLNHDGNIIDAASIAGIVALCHF 123
Query: 141 LQHMEDCSNKF----------QLSQVLKGHVAAISCGMLCGYPIV--DLDYGEDSTIDVD 188
+ K + + +S + D + E+ +D
Sbjct: 124 RRPDVSVQGKEVTVYSPEERDPVPLSIHHMPICVSFAFFQQGTYLLVDPNEREERVMDGL 183
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
M I +Q S +D + ++A++ +L + + N+
Sbjct: 184 LVIAMNKHREICTIQSSGGIMLL-KDQVLRCSKITAVKVAEITELIQKALEND 235
>gi|242003305|ref|XP_002422688.1| Exosome complex exonuclease RRP45, putative [Pediculus humanus
corporis]
gi|212505510|gb|EEB09950.1| Exosome complex exonuclease RRP45, putative [Pediculus humanus
corporis]
Length = 349
Score = 66.0 bits (159), Expect = 4e-09, Method: Composition-based stats.
Identities = 38/257 (14%), Positives = 74/257 (28%), Gaps = 24/257 (9%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
RL GR+ R++ + G C V G++ +++ E + P +R G
Sbjct: 23 RLDGRKLEGFRDLKIHFG---KDWGLCYVSLGESKVVSQVKCEIQEPQAVRP-NEGLFFM 78
Query: 62 EYGMLPRSTGNRVKREAVS-----GRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
+ ++ A + R + + I L S+ ++ I ID
Sbjct: 79 NVELSLMASPYIEPGRASNLSTHIQRLLDKCLYDSKAID--LESLCIVAEDKVWAIKIDV 136
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQL------------SQVLKGHVAAI 164
V+ DG A A AL + + + +
Sbjct: 137 HVLNHDGSLVDCASISALAALAHFKRPDVTTDGEEIKVHSTAERDPIPLTLHHYPICVSF 196
Query: 165 SCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAK 224
+ D E+ D + F + I + A A
Sbjct: 197 ALLNNSENIFADPTEIEERVSDANLTFGINAYKEICCLHLGGT-ALIKPKLIMTCSLKAA 255
Query: 225 DRIADLIKLQKDVISNE 241
R ++++L + I +
Sbjct: 256 ARAKEVVELINEAIKKD 272
>gi|195457250|ref|XP_002075492.1| GK14785 [Drosophila willistoni]
gi|194171577|gb|EDW86478.1| GK14785 [Drosophila willistoni]
Length = 415
Score = 66.0 bits (159), Expect = 4e-09, Method: Composition-based stats.
Identities = 39/253 (15%), Positives = 64/253 (25%), Gaps = 21/253 (8%)
Query: 2 RLSGRQENQMREISLTRRVSKYAE-GSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
RL GR+ R++ LT A+ G+ +V GDT +L + + P R +
Sbjct: 29 RLDGRKSGDFRDVKLTFG----ADWGTVIVAIGDTKVLAQVSCDIGTPSSARPNEGTLHL 84
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDL--SALGSRQIIIDCDV 118
E R+L + + +D V
Sbjct: 85 NVSLGGVAYLNESQTTHDQRFLTLNSLLERTFRNSRSLDLESLCVAAEQHVWCVRVDITV 144
Query: 119 IQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQ-------------LSQVLKGHVAAIS 165
+ DG A+ A AL + ++ L V
Sbjct: 145 LNHDGNLYDASTVAALAALMHFRRPDVTFLDEEIRIYSDKERELIPLLFLHYPVSVTYCL 204
Query: 166 CGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKD 225
YP VD E++ D + + A
Sbjct: 205 YKSNSHYPYVDPILLEENAADSIIVLSFNSYNELCSLNAGG-STPTKAGIIMQCARNAAK 263
Query: 226 RIADLIKLQKDVI 238
R L+ K +
Sbjct: 264 RSKSLVDFLKKAL 276
>gi|195480861|ref|XP_002101422.1| GE15642 [Drosophila yakuba]
gi|194188946|gb|EDX02530.1| GE15642 [Drosophila yakuba]
Length = 415
Score = 66.0 bits (159), Expect = 4e-09, Method: Composition-based stats.
Identities = 41/252 (16%), Positives = 75/252 (29%), Gaps = 20/252 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAE-GSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
R GR+ N+ R++ LT A+ G+ V GDT +LT T + P R +
Sbjct: 29 RFDGRRSNECRDVELTFG----ADWGTVAVSMGDTKVLTHVTCDMGAPATSRPNEGKLQL 84
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRA--LRSVVDLSALGSRQIIIDCDV 118
E R+ L S+ + I +D +V
Sbjct: 85 NVNLGGVAFLDEVQTTHDQRSLTLNSLLERTFRSSRSVDLESLCVAAEQHVWCIRVDVNV 144
Query: 119 IQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQ----------LSQVLKGHVAAISCGM 168
+ DG A+ AL + ++ + + + +++ +
Sbjct: 145 LNHDGNLYDASTIATLAALMHFRRPDVTFTDDELRIYTEKEREFIPLLFLHYPVSVTYCI 204
Query: 169 LCG--YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226
PIVD E++ D + + T + N A R
Sbjct: 205 YKSSGQPIVDPTLLEENAADSVIVLSFNSYQELCSLNAGGTAPTNVRTIMQCARNAA-TR 263
Query: 227 IADLIKLQKDVI 238
L+ + +
Sbjct: 264 CKSLVDFVRKAL 275
>gi|312371957|gb|EFR20014.1| hypothetical protein AND_20780 [Anopheles darlingi]
Length = 407
Score = 66.0 bits (159), Expect = 4e-09, Method: Composition-based stats.
Identities = 34/240 (14%), Positives = 65/240 (27%), Gaps = 21/240 (8%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R GR R + L + +A GS ++ +T +L E P R +
Sbjct: 131 RNDGRSNRDYRPMELELDIVVHASGSARLRLANTDILVGVKAEIDTPHPDRPNEGKIDFF 190
Query: 62 EYG--MLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119
R + ++ + G L S+ L+ ++ +D V+
Sbjct: 191 IDCSANAAPEFEGRGGEQLAEEISNTLAKAYESQHGFDLSSLCILANHQCWKLYVDVLVL 250
Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSN--KFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ G A AL++ + + +L + P++
Sbjct: 251 ECGGNLFDAISLAVKGALYNTRVPRVSTAMLDGGSMDLILTDDPFDCERLKVDTVPLLVT 310
Query: 178 DYGEDSTIDVDANFV--------------MTDSGH--IVEVQGSAERATFSQDHFFAMLN 221
VD + G I V+ S E + D +
Sbjct: 311 VCKIGEQCVVDPSAEEEECSAVSVVVGVSCRPEGKQSITTVRTSGE-GSIHMDTLQKCFD 369
>gi|302830011|ref|XP_002946572.1| hypothetical protein VOLCADRAFT_86657 [Volvox carteri f.
nagariensis]
gi|300268318|gb|EFJ52499.1| hypothetical protein VOLCADRAFT_86657 [Volvox carteri f.
nagariensis]
Length = 311
Score = 66.0 bits (159), Expect = 4e-09, Method: Composition-based stats.
Identities = 42/269 (15%), Positives = 75/269 (27%), Gaps = 30/269 (11%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+R GR + R +++ A+GS LVK G T +L LE P + G +
Sbjct: 35 VRPDGRPLGRARAVTIGAGAITSADGSALVKIGRTTVLGGVRLEIIRPDETAPS-QGQLA 93
Query: 61 AEYGMLPRSTGNRVKREAVSG-------------------RQGGRSQEIQRMIGRALRSV 101
+ P S+ + + + RA +
Sbjct: 94 LNVELAPFSSQDYRPGRQPDHVSAVTEKLTSALLTGGDAVQLSSLCIAEGKAAWRASLDL 153
Query: 102 VDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQV----- 156
L A G A TR A+ + + S
Sbjct: 154 YVLDADGCVLDTALLAATAALRNTRIPAVRSTREGHYVAVGAGSSGSGGAGGDGGLVAGS 213
Query: 157 -----LKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATF 211
+ ++C + Y +VD E+ + V+ G + V + +
Sbjct: 214 PTAVGMGRCPLGLTCCLYRNYILVDPTAEEERLAACSVSVVLDQHGRLQGVYKAGGKVLA 273
Query: 212 SQDHFFAMLNLAKDRIADLIKLQKDVISN 240
A+ R +L L + +S
Sbjct: 274 DAATLVKCTEAARLRYRELSGLLEQSLSQ 302
>gi|167517347|ref|XP_001743014.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163778113|gb|EDQ91728.1| predicted protein [Monosiga brevicollis MX1]
Length = 256
Score = 66.0 bits (159), Expect = 4e-09, Method: Composition-based stats.
Identities = 34/220 (15%), Positives = 62/220 (28%), Gaps = 26/220 (11%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R GR NQ+RE+S V+ A+GS + G T + + VP+ I
Sbjct: 12 REDGRAPNQLRELSCDFAVNSAADGSARFRLGQTCVEVSVFGFRGVPVRSELPDRSAIEV 71
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
+ G R +A + + + + + Q + V+Q
Sbjct: 72 SFR---GVGGQRKVTDAA----------AENFLRECVDCALQVHEQPRSQCAVAAHVVQD 118
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
DGG A + +AL D M + +
Sbjct: 119 DGGVLAALASATCLALLDAGLPMTNVFVGVSS----------AFDAKGGFLLDPSATEAQ 168
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLN 221
S + G ++ + + + +L
Sbjct: 169 ASANATVVLSCGAEGGRVLACE---QHGPLTPTQLDYVLQ 205
>gi|195128659|ref|XP_002008779.1| GI11625 [Drosophila mojavensis]
gi|193920388|gb|EDW19255.1| GI11625 [Drosophila mojavensis]
Length = 417
Score = 66.0 bits (159), Expect = 5e-09, Method: Composition-based stats.
Identities = 35/252 (13%), Positives = 70/252 (27%), Gaps = 18/252 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R GR+ N+ R++ LT G+ V GDT +L + + P R +
Sbjct: 29 RFDGRKANEFRDVKLTFG---SDWGTVAVSMGDTKVLAQVSCDIGTPSSARANEGTLYLN 85
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLS--ALGSRQIIIDCDVI 119
E R L + +D +V+
Sbjct: 86 VDIKGVAFLDEIQSTHDQRFLTLNSLLERTFRSSRCLDLESLCIAVEQHVWCVRVDINVL 145
Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQ----------LSQVLKGHVAAISCGML 169
DG A+ A AL + + + + + + +++ +
Sbjct: 146 NHDGNLYDASTIAALAALMHFRRPEVSYAEEKIHTFSERERELMPLLFLHYPVSVTYCLY 205
Query: 170 C--GYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRI 227
P+VD E++ D + + T + A +R
Sbjct: 206 KSSSNPLVDPTLLEENAADSIIVLSFNSYQELCTLNAGGTAPTNVRTIM-QCARSAANRS 264
Query: 228 ADLIKLQKDVIS 239
L++ + +
Sbjct: 265 KALVQFIRKALE 276
>gi|302841757|ref|XP_002952423.1| hypothetical protein VOLCADRAFT_105481 [Volvox carteri f.
nagariensis]
gi|300262359|gb|EFJ46566.1| hypothetical protein VOLCADRAFT_105481 [Volvox carteri f.
nagariensis]
Length = 247
Score = 65.6 bits (158), Expect = 5e-09, Method: Composition-based stats.
Identities = 43/235 (18%), Positives = 67/235 (28%), Gaps = 26/235 (11%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R GR Q+R + R V A+GS + +L + + + +
Sbjct: 15 RARGRLPTQLRTLVCERSVLDRADGSAKWTQEGSSVLAAVYGPRQAKPQKEDAEQAVVEV 74
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
Y G+ + + R L V+ L I++ V+Q
Sbjct: 75 VYKPRAGLQGHEDRTFELEVRGI-------------LEGVIPLGMYPRTSIMVVLQVLQG 121
Query: 122 DGGTRTAAITGAWVALHDCLQHM------EDCSNKFQLSQVLKGHVAAISCGMLCGYPIV 175
DG + A+ A AL D M C + +L A C V
Sbjct: 122 DGAVLSCALNAACAALVDAGIAMTSMYASVTCVLTEEERLLLDSDAAEEQAAKACFCFTV 181
Query: 176 DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADL 230
Y ID G S +F+ DH LA+ +
Sbjct: 182 PHHYDLTKAIDGQVVISNAALG-------SRSYGSFTSDHMLDAFMLARLGCERV 229
>gi|148703327|gb|EDL35274.1| exosome component 8, isoform CRA_c [Mus musculus]
gi|148703328|gb|EDL35275.1| exosome component 8, isoform CRA_c [Mus musculus]
Length = 90
Score = 65.6 bits (158), Expect = 5e-09, Method: Composition-based stats.
Identities = 14/48 (29%), Positives = 22/48 (45%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPM 49
R GR+ + R ++ A+GS LVK G+T ++ E P
Sbjct: 23 RPDGRELGEFRATTVNIGSISTADGSALVKLGNTTVICGVKAEFAAPP 70
>gi|327287178|ref|XP_003228306.1| PREDICTED: exosome complex exonuclease RRP42-like [Anolis
carolinensis]
Length = 148
Score = 65.6 bits (158), Expect = 5e-09, Method: Composition-based stats.
Identities = 19/76 (25%), Positives = 27/76 (35%), Gaps = 1/76 (1%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+R+ GR R I + V GS VK G T +L E VP + G++
Sbjct: 22 LRVDGRGCEDYRCIEVETDVVSNTSGSARVKLGHTDILVGVKAEMGVPK-LDRPNEGFLE 80
Query: 61 AEYGMLPRSTGNRVKR 76
+T R
Sbjct: 81 FFVDCSANATPEFEGR 96
>gi|237841089|ref|XP_002369842.1| 3' exoribonuclease, putative [Toxoplasma gondii ME49]
gi|211967506|gb|EEB02702.1| 3' exoribonuclease, putative [Toxoplasma gondii ME49]
gi|221483644|gb|EEE21956.1| 3' exoribonuclease, putative [Toxoplasma gondii GT1]
Length = 303
Score = 65.6 bits (158), Expect = 5e-09, Method: Composition-based stats.
Identities = 45/240 (18%), Positives = 76/240 (31%), Gaps = 10/240 (4%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R GR+ +MR + + A GS V G T L G I
Sbjct: 47 RHDGRRFEEMRAMCMQTHSLAAAAGSAFVSVGKTKLNCAVYGPRPNMKHAS-QDRGSINL 105
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
E+ P +T ++A S R + ++ +AL +VV L I + V++
Sbjct: 106 EFRFAPFAT---TGKDACSERDTAH---LTTLLHQALNAVVRLDLYAKSTIAVSVLVLED 159
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
DGG +AA+T +AL D M D GH + + P +
Sbjct: 160 DGGLISAALTCIGLALADAGIEMLDVVTGASACVFSVGHPDSPPRTCVLLDPDAEERRAF 219
Query: 182 DSTIDVDANF-VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
+ + + S + + ML L + + + +
Sbjct: 220 ADKNCTFVDLGYCPALASVCFIHASG--TLLATESGEQMLRLCEAACYAVADEVRSCLRR 277
>gi|327303316|ref|XP_003236350.1| exosome complex endonuclease 2/ribosomal RNA processing protein
[Trichophyton rubrum CBS 118892]
gi|326461692|gb|EGD87145.1| exosome complex endonuclease 2/ribosomal RNA processing protein
[Trichophyton rubrum CBS 118892]
Length = 292
Score = 65.6 bits (158), Expect = 5e-09, Method: Composition-based stats.
Identities = 47/260 (18%), Positives = 85/260 (32%), Gaps = 28/260 (10%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+RL GR+ +Q+R + LT G+ V+ G T +L + E P R+ G T
Sbjct: 23 LRLDGRRFDQLRPVELTFG---DEHGNVKVQLGKTAVLVRISAELTTPRPERDCD-GIFT 78
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGR------ALRSVVDLSALGSRQIII 114
+ + +GR + R + + AL + A G I
Sbjct: 79 VVVEL-----NDMALPGYETGRPSELEVSLSRTLDKIVRRSNALDTESLCIAKGRICWNI 133
Query: 115 --DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY 172
D ++ DGG A+ L + + V
Sbjct: 134 RADIHILDCDGGLIDASCLAIMAGLLHFRLPESTVRDGEVTVFTTEEKVPVQLNLTKIPL 193
Query: 173 PIVDLDYGEDSTIDVDANFV---MTDSGHIVEVQGSAERATFSQDH--------FFAMLN 221
+ Y E + +DA +++ +V + + E A +S+
Sbjct: 194 SVTFNLYDEGKIMLLDATTSEEAVSEGSLVVALDKTGEIALYSKPDGAPADPVNMVNCST 253
Query: 222 LAKDRIADLIKLQKDVISNE 241
LA +++ +L KL + E
Sbjct: 254 LALEKVRELNKLLAARLEEE 273
>gi|19113177|ref|NP_596385.1| exosome subunit Rrp43 (predicted) [Schizosaccharomyces pombe 972h-]
gi|1723274|sp|Q10205|RRP43_SCHPO RecName: Full=Exosome complex component rrp43; AltName:
Full=Ribosomal RNA-processing protein 43
gi|3451295|emb|CAA20427.1| exosome subunit Rrp43 (predicted) [Schizosaccharomyces pombe]
Length = 270
Score = 65.6 bits (158), Expect = 5e-09, Method: Composition-based stats.
Identities = 32/237 (13%), Positives = 71/237 (29%), Gaps = 16/237 (6%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+R GR ++ REI + A GS +++ G+ + E P + + GWI
Sbjct: 34 VRSDGRSVSEFREIVINDNCISTANGSAIIRAGENVFVCGIKAEIAEP-FENSPNEGWIV 92
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
+ P + Q + Q + ++ + + ++
Sbjct: 93 PNLELSPLCSSKFKPGPPSDLAQVVSQELHQ-TLQQSNLINLQSLCIFEKKAAWVLYADI 151
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVL-------------KGHVAAISCG 167
+A AW AL L+ ++ + + V + S
Sbjct: 152 ICLNYDGSAFDYAWAALFAALKTVKLPTAVWDEDLERVICASTLTRPVQLSTEVRSFSWS 211
Query: 168 MLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAK 224
+ + D E+ ++ S +IV++ + +A+
Sbjct: 212 VFDDKLLADPTDEEEDLSTEFLTIMLNSSKNIVKIIKLG-GTHIQPLLLKKCIEVAR 267
>gi|327276285|ref|XP_003222900.1| PREDICTED: exosome complex exonuclease RRP46-like isoform 1 [Anolis
carolinensis]
Length = 223
Score = 65.6 bits (158), Expect = 5e-09, Method: Composition-based stats.
Identities = 34/226 (15%), Positives = 63/226 (27%), Gaps = 27/226 (11%)
Query: 11 MREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRST 70
+R I + + +GS GDT +L +V Y
Sbjct: 16 LRRIVCEQGLLSRPDGSASWMQGDTSVLAGVYGPSEV---------KVSKEIYDKATLEV 66
Query: 71 GNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAI 130
R K G + ++MI + +VV + I I VI G + +
Sbjct: 67 MLRPKVGL----PGVYERSREQMIKKTCEAVVLGTLHPRSSITIVLQVITDAGSLLASCL 122
Query: 131 TGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDAN 190
A + L D M + G +D ++
Sbjct: 123 NAACMGLMDAGLPMGSLFCGVTCAL------------DADGNFTLDPTAKQEKEAQTVLT 170
Query: 191 FVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
F + V S+ + T S + + ++ + + +D
Sbjct: 171 FAIDSIEKKVL--MSSMKGTCSVEQLQQCVAASQRAADTIFQFYRD 214
>gi|87311732|ref|ZP_01093847.1| polyribonucleotide nucleotidyltransferase [Blastopirellula marina
DSM 3645]
gi|87285516|gb|EAQ77435.1| polyribonucleotide nucleotidyltransferase [Blastopirellula marina
DSM 3645]
Length = 385
Score = 65.6 bits (158), Expect = 5e-09, Method: Composition-based stats.
Identities = 31/200 (15%), Positives = 69/200 (34%), Gaps = 14/200 (7%)
Query: 40 TATLEEKVPMWIRNTKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALR 99
+ +E+ ++ +Y S G R+ G R+++
Sbjct: 2 GTSRDEQRVDGLQEEYAKKFMLDYNFPSYSVGECRPIRGPGRREIGHGAL----AERSVK 57
Query: 100 SVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKG 159
V+ I + D+++++G + A++ A + L + + + V +G
Sbjct: 58 PVLPGPDEFPYTIRVISDILESNGSSSMASVCAATLGLMAAGVPISNPVAGISVGLVKEG 117
Query: 160 HVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAM 219
+ D+ ED D+D T +G I +Q + A S + A
Sbjct: 118 DD---------FILLTDILGDEDHFGDMDFKIAGTQNG-ITGIQLDLKIAGISAEIIKAT 167
Query: 220 LNLAKDRIADLIKLQKDVIS 239
L ++ ++++ IS
Sbjct: 168 LEQSRIARIEILRTMLTTIS 187
>gi|153876840|ref|ZP_02003956.1| polyribonucleotide nucleotidyltransferase [Beggiatoa sp. PS]
gi|152066696|gb|EDN66044.1| polyribonucleotide nucleotidyltransferase [Beggiatoa sp. PS]
Length = 255
Score = 65.6 bits (158), Expect = 6e-09, Method: Composition-based stats.
Identities = 16/114 (14%), Positives = 39/114 (34%), Gaps = 10/114 (8%)
Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
A++ G+ +AL D ++ + + + + ++ ED D
Sbjct: 1 MASVCGSSLALMDAGVQIKAPVAGIAMGLIKEDDQFVVLSDIM---------GDEDHLGD 51
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
+D T G + +Q + + + L AK+ ++ L ++
Sbjct: 52 MDFKVAGTTDG-VTALQMDIKIEGITSEIMETALAQAKEGRLHILSLMCQALAE 104
>gi|331234110|ref|XP_003329715.1| exosome complex exonuclease rrp45 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|309308705|gb|EFP85296.1| exosome complex exonuclease rrp45 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 284
Score = 65.6 bits (158), Expect = 6e-09, Method: Composition-based stats.
Identities = 42/259 (16%), Positives = 78/259 (30%), Gaps = 31/259 (11%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEG-SCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
R+ R + R +SL+ +G S G+T + + P W G
Sbjct: 24 RIDQRALLEQRPVSLSF----AEDGHSVDCSLGNTRVAAHVSASITKP-WADRPFEGLFQ 78
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSA--------LGSRQI 112
+ P +GR +I RM+ ++L + I
Sbjct: 79 ISSEINPM-----ANFIYDTGRSSENEIQISRMLDKSLSRSGVIDKEALCILAGQMVWSI 133
Query: 113 IIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQ------LSQVLKGHVAAISC 166
+D + +G A A AL + + + L +++
Sbjct: 134 RLDLHFLNDEGNLLDCASIAAIAALQTFQRPDVTLVGEEITIERVPVPLTLHHTPISLTY 193
Query: 167 GM-----LCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLN 221
G ++D +Y E+ + I V S S + ++
Sbjct: 194 GFFELDSHKSSVVLDPNYLEEQLSTGTITLALNPQKEICVVNKSG-GVPLSIEEIMNVVK 252
Query: 222 LAKDRIADLIKLQKDVISN 240
L ++ L +L K +ISN
Sbjct: 253 LGSQKVKQLDQLIKSLISN 271
>gi|289524567|ref|ZP_06441421.1| polyribonucleotide nucleotidyltransferase [Anaerobaculum
hydrogeniformans ATCC BAA-1850]
gi|289502193|gb|EFD23357.1| polyribonucleotide nucleotidyltransferase [Anaerobaculum
hydrogeniformans ATCC BAA-1850]
Length = 187
Score = 65.6 bits (158), Expect = 6e-09, Method: Composition-based stats.
Identities = 25/138 (18%), Positives = 49/138 (35%), Gaps = 11/138 (7%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEK----VPMWIRNTKHGWITAEYGML 66
R + + ++K A G+ ++GDT +L TA +E++ V + + G +
Sbjct: 19 RTLVFSTGHLAKQANGAVYARYGDTAVLVTACMEDEPREDVDFFPLIVDYEERFYAAGKI 78
Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
P R G+ + R++ R++RS+ ++ +
Sbjct: 79 PGGFIKR------EGKPSESAILSARLVDRSIRSLFPEHMKNDVHVVATILSVDQTNPPD 132
Query: 127 TAAITGAWVALHDCLQHM 144
AI A AL
Sbjct: 133 VLAINAASAALAISDIPW 150
>gi|157114057|ref|XP_001657962.1| hypothetical protein AaeL_AAEL006697 [Aedes aegypti]
gi|108877466|gb|EAT41691.1| conserved hypothetical protein [Aedes aegypti]
Length = 307
Score = 65.6 bits (158), Expect = 6e-09, Method: Composition-based stats.
Identities = 42/243 (17%), Positives = 93/243 (38%), Gaps = 16/243 (6%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R GR++N+ R+ + V A+GS ++ G+T ++ + ++P + G +
Sbjct: 42 RKCGRKDNESRKYFMKLGVVSTAKGSTYLELGNTKVIVSVFDPREIPKQNKFRALGELYC 101
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
++ P + +R + + + + + +AL+ VV + QI I +V++
Sbjct: 102 DFKFSPFACIHRKNPQTDAEERS-----LAAAMTKALQPVVCRHLFPNFQIDIFANVLED 156
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
DG A IT A +AL D M D ++ A+ + P + +
Sbjct: 157 DGSVLAAVITAAGLALSDATISMFD---------IVTASTVAVIEDKIYLDPTLAEERLC 207
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSA--ERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
+ V+T + Q S + S + + ++ + + ++
Sbjct: 208 LEGGKSGNHGVITLAKLHTLDQTSEIRQAGDISLEKLKEACQRLNEANNEIAPVVQQMLV 267
Query: 240 NEV 242
+V
Sbjct: 268 GKV 270
>gi|167382557|ref|XP_001736162.1| hypothetical protein [Entamoeba dispar SAW760]
gi|165901601|gb|EDR27679.1| hypothetical protein, conserved [Entamoeba dispar SAW760]
Length = 227
Score = 65.6 bits (158), Expect = 6e-09, Method: Composition-based stats.
Identities = 37/240 (15%), Positives = 87/240 (36%), Gaps = 26/240 (10%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R GR+ N++R ++ V A+GSCL++ ++ ++++ +
Sbjct: 7 RGDGREANEIRATTIKIGVISGAKGSCLIQKENSKVISSV-------------QIKTQDE 53
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
+ E S + E+Q ++ ++L S ++ + + I + V++
Sbjct: 54 SIDFEFTVKVTFAQFENNSLFNNRKEIELQEILTQSLTSRINQESNKGKIICLQVFVMEQ 113
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
DG + I + +AL D M+ + V+K + + + E
Sbjct: 114 DGSVEDSIINSSSLALFDAEIQMDS---IIIATTVVKLPI-------YNQVIVDPTAFEE 163
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
+ + + I ++ S + L++A D L K + +I ++
Sbjct: 164 EKKEGSVLIACIPSNSSITQIYMSG---VLDPQDISSCLSIALDSCWKLNKEIELIIQSK 220
>gi|225718446|gb|ACO15069.1| Exosome complex exonuclease RRP42 [Caligus clemensi]
Length = 250
Score = 65.3 bits (157), Expect = 6e-09, Method: Composition-based stats.
Identities = 31/231 (13%), Positives = 67/231 (29%), Gaps = 23/231 (9%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+R+ GRQ +R + L + +A GS V+ +T +L E + G +
Sbjct: 22 IRVDGRQRKDVRPMILETDIITHANGSARVQLSNTDVLVGVKAE-----LCEHKPGGGLE 76
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSV-VDLSALGSRQIIIDCD-- 117
++ R S L + + I+ D
Sbjct: 77 FYVDCSANASPVFEGRGGEDLALEIASTLSSSYSDNKLFNRSILNVFQNRYAWILHVDVL 136
Query: 118 ----VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAA---------- 163
++A+ A A H+ D ++ +
Sbjct: 137 ILEVEGGNLFDVASSAVKAALFATQIPKVHIVDVDGGVPEIELSEDPDECFRLDVSNAPV 196
Query: 164 -ISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQ 213
++ + + I D E++ ++ SG I ++ + + S+
Sbjct: 197 LVTLNRIGHFCIADASPNEEACSSAAMVIAVSPSGRISSLRKIGDGSFSSR 247
>gi|25144570|ref|NP_741217.1| EXOSome (multiexonuclease complex) component family member (exos-9)
[Caenorhabditis elegans]
gi|14625162|gb|AAC48298.2| Exosome (multiexonuclease complex) component protein 9, isoform a,
confirmed by transcript evidence [Caenorhabditis
elegans]
Length = 434
Score = 65.3 bits (157), Expect = 7e-09, Method: Composition-based stats.
Identities = 41/258 (15%), Positives = 76/258 (29%), Gaps = 26/258 (10%)
Query: 2 RLSGRQENQMREISLTRRVSKYAE-GSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
R R + R++ L AE G+ + G+T ++ + E P +R G I
Sbjct: 23 RFDFRSLEEFRDVKLVVG----AEVGTAICTIGNTKVMAAVSAEIAEPSSMRPH-KGVIN 77
Query: 61 AEYGMLPRST----GNRVKRE-AVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115
+ + P + +R+ + R R I + + +I +D
Sbjct: 78 IDVDLSPMANYANEHDRLGSKGMELIRLLELIIRDSRCIDVEALCIRAGKEI--WKIRVD 135
Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHME----------DCSNKFQLSQVLKGHVAAIS 165
++ DG A A AL + K + + +
Sbjct: 136 VRILDEDGSLLDCACLAAITALQHFRRPNVTLEPHHTLIYSEYEKAPVPLNIYHMPICTT 195
Query: 166 CG--MLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLA 223
G ++D E + +D + + S S + LA
Sbjct: 196 IGLLDKGQIVVIDPTDKETACLDGSIVVACNKRREVCALHQSTNLI-LSTKQIERCVKLA 254
Query: 224 KDRIADLIKLQKDVISNE 241
R L + DVI +
Sbjct: 255 MARAEALTAVVSDVIKQD 272
>gi|302654106|ref|XP_003018865.1| exosome complex endonuclease 2/ribosomal RNA processing protein,
putative [Trichophyton verrucosum HKI 0517]
gi|291182546|gb|EFE38220.1| exosome complex endonuclease 2/ribosomal RNA processing protein,
putative [Trichophyton verrucosum HKI 0517]
Length = 292
Score = 65.3 bits (157), Expect = 7e-09, Method: Composition-based stats.
Identities = 45/260 (17%), Positives = 85/260 (32%), Gaps = 28/260 (10%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+RL GR+ +Q+R + LT G+ V+ G T +L + E P R+ G T
Sbjct: 23 VRLDGRRFDQLRPVELTFG---EEHGNVKVQLGKTAVLVRISAELTTPRPERDCD-GIFT 78
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGR------ALRSVVDLSALGSRQIII 114
+ + +GR + R + + AL + A G +
Sbjct: 79 VVVEL-----NDMALPGYETGRPSELEVSLSRTLDKIVRRSNALDTESLCIAKGRICWNV 133
Query: 115 --DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY 172
D ++ DGG A+ L + + V
Sbjct: 134 RADIHILDCDGGLIDASCLAIMAGLLHFRLPESTVRDGEVTVFTTEEKVPVQLNLTKIPL 193
Query: 173 PIVDLDYGEDSTIDVDANFV---MTDSGHIVEVQGSAERATFSQDH--------FFAMLN 221
+ Y E + +DA +++ +V + + E A +S+
Sbjct: 194 SVTFNLYDEGKIMLLDATTSEEAVSEGSLVVALDKTGEIALYSKPDGAPADPVNMVNCST 253
Query: 222 LAKDRIADLIKLQKDVISNE 241
LA +++ +L KL + +
Sbjct: 254 LALEKVRELNKLLAARLEED 273
>gi|302691292|ref|XP_003035325.1| hypothetical protein SCHCODRAFT_50397 [Schizophyllum commune H4-8]
gi|300109021|gb|EFJ00423.1| hypothetical protein SCHCODRAFT_50397 [Schizophyllum commune H4-8]
Length = 259
Score = 65.3 bits (157), Expect = 7e-09, Method: Composition-based stats.
Identities = 33/239 (13%), Positives = 64/239 (26%), Gaps = 21/239 (8%)
Query: 4 SGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEY 63
SGR E +R I L + A GS ++ + + + ++ G + E
Sbjct: 35 SGRGELDIRPIFLRPGLISQANGSAYIEADKIKIACAVYGPRQNKN-VAYSEQGRLNVEV 93
Query: 64 GMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADG 123
P +T R + + I I +AL + V L L +
Sbjct: 94 KYAPYATARRKAPLRDAEDRS-----IGVAIHQALLASVRLELLPKSTV----------- 137
Query: 124 GTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDS 183
I + + + G V++ S + +D E
Sbjct: 138 DIFLVIIEADGKEASIASGAVAASAALADAGIEMLGLVSSCSAAVTGDKIWLDPSAAESE 197
Query: 184 TIDVDANF-VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
D M + V S ++ + + D+ + +
Sbjct: 198 QADGTVILSCMPALDSVTSVWQSGR---LPPQKALECMHACQQKCVDIHSVVAQALLEH 253
>gi|158819077|ref|NP_001103659.1| exosome component 6 [Bos taurus]
gi|157743163|gb|AAI53218.1| EXOSC6 protein [Bos taurus]
Length = 272
Score = 65.3 bits (157), Expect = 7e-09, Method: Composition-based stats.
Identities = 39/245 (15%), Positives = 75/245 (30%), Gaps = 28/245 (11%)
Query: 6 RQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK---------- 55
R ++R + + A+GS ++ G T +L + R
Sbjct: 31 RDPARLRPVYARAGLLSQAKGSAYLEAGGTKVLCAVSGPRPAEGGERGGGPAGAGGEAPA 90
Query: 56 --HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQII 113
G + ++ P S R GG +E+ + AL V L Q+
Sbjct: 91 ALRGRLLCDFRRAPFSGRRRRAPPG-----GGEERELALALQEALEPAVRLGRYPRAQLE 145
Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP 173
+ +++ G AA+T A +AL D M D + + +
Sbjct: 146 VSALLLEDGGSALAAALTAAALALADAGVEMYDLVVGC---------GLSRAPAPAPAWL 196
Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
+ E+ +M + V GS E + + + L + L +
Sbjct: 197 LDPTLLEEERASAGLTVALMPVLNQVAGVLGSGEGGP--TESWAEAVRLGLEGCQRLYPV 254
Query: 234 QKDVI 238
+ +
Sbjct: 255 LQQCL 259
>gi|164657360|ref|XP_001729806.1| hypothetical protein MGL_2792 [Malassezia globosa CBS 7966]
gi|159103700|gb|EDP42592.1| hypothetical protein MGL_2792 [Malassezia globosa CBS 7966]
Length = 313
Score = 65.3 bits (157), Expect = 8e-09, Method: Composition-based stats.
Identities = 33/269 (12%), Positives = 65/269 (24%), Gaps = 32/269 (11%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGD-THLLTTATLEEKVPMWIRNTKHGWI 59
+R GR +Q+R +S+ GS LV+ G+ T + + T P + G++
Sbjct: 42 IREDGRTLDQLRSVSVATGTLSQPFGSALVRLGEGTLVTASVTARIAHP-TLERPNEGFL 100
Query: 60 TAEYGMLPRSTGNRVKREAVSGRQ------------GGRSQEIQRMIGRALRSVVDLSAL 107
+ + Q G I + L +
Sbjct: 101 IPSVDLSSLCSPLYNAGPPEEEGQVLTHNLQMFLNNSGILPRSALCIEKGLAVWAIYVDV 160
Query: 108 GSRQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCG 167
A + L ++ G
Sbjct: 161 VCVSAEGSVLDAAALATVAALHDCQLPRIDRFVNSSQAIFDPDTKERLPLMNLPIFMTLG 220
Query: 168 MLCGYPIVDLDYGEDSTIDV--------DANFVMTDSG---------HIVEVQGSAERAT 210
M ++ + ++ D N + D ++ +
Sbjct: 221 MYESTYVLADLTAFEESLCTGSIQVGLVDVNNEVNDPDIAKYDVFWLKVLGPCTTKHPQP 280
Query: 211 FSQDHFFA-MLNLAKDRIADLIKLQKDVI 238
+ + A+ R L KL KD +
Sbjct: 281 LENEALIEWCIEKAQKRAQKLRKLIKDAL 309
>gi|58266526|ref|XP_570419.1| hypothetical protein [Cryptococcus neoformans var. neoformans
JEC21]
gi|134110532|ref|XP_776093.1| hypothetical protein CNBD1410 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50258761|gb|EAL21446.1| hypothetical protein CNBD1410 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|57226652|gb|AAW43112.1| conserved hypothetical protein [Cryptococcus neoformans var.
neoformans JEC21]
Length = 308
Score = 65.3 bits (157), Expect = 8e-09, Method: Composition-based stats.
Identities = 27/288 (9%), Positives = 68/288 (23%), Gaps = 50/288 (17%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R GR Q+R + L+ A+GS FG +L + + +V +
Sbjct: 18 RPDGRTPAQLRPLHLSIGELDRADGSARFAFGSNAVLASCSGPIEVRLREELPDKATFEV 77
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALG------------- 108
+ L + + R+L +V S +
Sbjct: 78 NHRPLEGVGATPSRALVTTLETIFPPILSLEKHPRSLVQLVVQSLVPSTGRVVYGSVFGA 137
Query: 109 ----------------SRQIIIDCDVIQADGGTRTAAITGAWVALHDC------------ 140
I + A A A +
Sbjct: 138 EGVGAEQNTWPATDKDDYAYIPESRKDAARISPAAGYTFTARAASINASTLALLSAGTIS 197
Query: 141 ------LQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMT 194
+ + + + G+ + + ++
Sbjct: 198 ILALPVAVALVVTTKGRVMLDPEADEEKQAKARLGFGWAWGAVFGTANEENNMGVAGQND 257
Query: 195 DSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNEV 242
+V ++ +F++ + L ++K +++ + + +
Sbjct: 258 GGAELVWIES---EGSFTRQEWSEALQMSKTASKAILEFIRIQLDAHL 302
>gi|217032225|ref|ZP_03437723.1| hypothetical protein HPB128_2g27 [Helicobacter pylori B128]
gi|216946096|gb|EEC24707.1| hypothetical protein HPB128_2g27 [Helicobacter pylori B128]
Length = 292
Score = 65.3 bits (157), Expect = 8e-09, Method: Composition-based stats.
Identities = 33/224 (14%), Positives = 67/224 (29%), Gaps = 26/224 (11%)
Query: 20 VSKYAEGSCLVKFGDTHLLTTATLEEKV---PMWIRNTKHGWITAEYGMLPRSTGNRVKR 76
V+K A S + + G T +L + +E + + + G +P R
Sbjct: 20 VAKQATSSLMYRLGKTIILASVCVEREPVSEDFLPLVVQFLEKSYAAGKIPGGFVKR--- 76
Query: 77 EAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVA 136
GR R+I R LR + QI + + + +A+ A A
Sbjct: 77 ---EGRAQDFEILTSRLIDRTLRPLFPKDYRYPTQITLMVLSHDIENDLQVSALNAASAA 133
Query: 137 LHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDS 196
L V+A + I++ + + +D T
Sbjct: 134 LFLAHIAPIKS-------------VSACRIARVDNEFIINPNTSLLNQSSLDLFVSGTKE 180
Query: 197 GHIVEVQGSAER---ATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
+ ++ + + L LA+ + + L ++
Sbjct: 181 -SLNMIEMRSLGQQLNALEEPLMLKALELAQKSLKETCTLYEEA 223
>gi|76155868|gb|AAX27138.2| SJCHGC06185 protein [Schistosoma japonicum]
Length = 251
Score = 64.9 bits (156), Expect = 8e-09, Method: Composition-based stats.
Identities = 30/156 (19%), Positives = 58/156 (37%), Gaps = 4/156 (2%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHG-WIT 60
R+ GR+ N++R + S ++G + G+T ++ + G I
Sbjct: 3 RVDGRRPNELRRVHCQFG-SGNSDGIVFLHQGNTKVIASVVGPHAPRTKGDGNPDGATII 61
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
++ P ++ + +R+ S + + + I VV QI I +VIQ
Sbjct: 62 CQFTKPPFASTSGERRKVASNDRS--ANDFSTAIEEIFSCVVRTEKYPMSQIDIFLEVIQ 119
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQV 156
+DG A+ +AL D M + +
Sbjct: 120 SDGSEFACAVNATTLALTDAGIEMHYLVSAATVGLW 155
>gi|322790229|gb|EFZ15228.1| hypothetical protein SINV_06363 [Solenopsis invicta]
Length = 139
Score = 64.9 bits (156), Expect = 9e-09, Method: Composition-based stats.
Identities = 23/138 (16%), Positives = 43/138 (31%), Gaps = 2/138 (1%)
Query: 4 SGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEY 63
GR+ R IS+ A+ S + K GDT + E P HG+I
Sbjct: 2 DGRKFLSFRPISINVSSIVQADSSAIFKLGDTTAVCGIKAELATPKA-DTPDHGYIVPNV 60
Query: 64 GMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADG 123
+ P + Q S+ I ++ ++ + + +++
Sbjct: 61 ELSPLCSSKFRPGPPSEQAQV-LSKLIDIILSNSVALDLKDLCICRNKLVWVLYCDILCL 119
Query: 124 GTRTAAITGAWVALHDCL 141
+ I A+ L
Sbjct: 120 NYNGSVIDACTGAMFAAL 137
>gi|113679482|ref|NP_001038817.1| exosome complex exonuclease RRP46 isoform 1 [Danio rerio]
gi|112419436|gb|AAI22388.1| Exosome component 5 [Danio rerio]
gi|182891334|gb|AAI64315.1| Exosc5 protein [Danio rerio]
Length = 218
Score = 64.9 bits (156), Expect = 9e-09, Method: Composition-based stats.
Identities = 29/230 (12%), Positives = 63/230 (27%), Gaps = 27/230 (11%)
Query: 11 MREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRST 70
+RE + + +GS GDT +L +V + +
Sbjct: 10 LREYGSEQSLLSRPDGSSTFVQGDTSILAGVYGPAEVKVSKEIYDRATVEVLIQPKMGLP 69
Query: 71 GNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAI 130
R + R+ + + L+ + + V+ DG + +
Sbjct: 70 SVRERAREQCVRET-------------CEAALLLTLHPRSSLTVILQVVHDDGSLLSCCL 116
Query: 131 TGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDAN 190
A +AL D M + G I D ++
Sbjct: 117 NAACMALMDAGLPMSRLFC------------SVTCAISKEGQIITDPTARQEKVSRALLT 164
Query: 191 FVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
F + + V S+ +FS + +++ + + +D +
Sbjct: 165 FAIDSNERNVL--MSSTTGSFSVQELQQCIAISQKASEQIFQFYRDSVKR 212
>gi|326469540|gb|EGD93549.1| 3' exoribonuclease [Trichophyton tonsurans CBS 112818]
gi|326478933|gb|EGE02943.1| exosome complex exonuclease RRP45 [Trichophyton equinum CBS 127.97]
Length = 292
Score = 64.9 bits (156), Expect = 9e-09, Method: Composition-based stats.
Identities = 45/260 (17%), Positives = 85/260 (32%), Gaps = 28/260 (10%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+RL GR+ +Q+R + LT G+ V+ G T +L + E P R+ G T
Sbjct: 23 VRLDGRRFDQLRPVELTFG---EEHGNVKVQLGKTAVLVRISAELTTPRPERDCD-GIFT 78
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGR------ALRSVVDLSALGSRQIII 114
+ + +GR + R + + AL + A G +
Sbjct: 79 VVVEL-----NDMALPGYETGRPSELEVSLSRTLDKIVRRSNALDTESLCIAKGRICWNV 133
Query: 115 --DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY 172
D ++ DGG A+ L + + V
Sbjct: 134 RADIHILDCDGGLIDASCLAIMAGLLHFRLPESTVRDGEVTVFTTEEKVPVQLNLTKIPL 193
Query: 173 PIVDLDYGEDSTIDVDANFV---MTDSGHIVEVQGSAERATFSQDH--------FFAMLN 221
+ Y E + +DA +++ +V + + E A +S+
Sbjct: 194 SVTFNLYDEGKIMLLDATTSEEAVSEGSLVVALDKTGEIALYSKPDGAPADPVNMVNCST 253
Query: 222 LAKDRIADLIKLQKDVISNE 241
LA +++ +L KL + +
Sbjct: 254 LALEKVRELNKLLAARLEED 273
>gi|307109085|gb|EFN57324.1| hypothetical protein CHLNCDRAFT_21722 [Chlorella variabilis]
Length = 223
Score = 64.9 bits (156), Expect = 9e-09, Method: Composition-based stats.
Identities = 42/226 (18%), Positives = 76/226 (33%), Gaps = 25/226 (11%)
Query: 16 LTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGNRVK 75
L V A GS +FG T ++ + + ++ G + + + ++ R
Sbjct: 5 LKTGVISQASGSAYAEFGHTKVMVGVYGPRQSERRVGYSEQGRVNCDVKLASFASRQRG- 63
Query: 76 REAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWV 135
Q +E+ + AL + DL++ + + V++A GG A T A +
Sbjct: 64 -------QSAEERELSAALQTALEAAADLASFPKASVDVFVLVLEAGGGELGVAATAAAL 116
Query: 136 ALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFV-MT 194
AL D M D VAA S + G ++D E + M
Sbjct: 117 ALADAGVEMFDL-------------VAACSVSRVQGSLVLDPTADEVFREEGGLVLALMP 163
Query: 195 DSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
S + ++ +S + LA A L + +
Sbjct: 164 TSSEVTQMVSRGR---WSSSQLREGMELAMGGCAQLDAAARQCLKE 206
>gi|322818634|gb|EFZ25985.1| ribosomal RNA processing protein 41A, putative [Trypanosoma cruzi]
Length = 252
Score = 64.9 bits (156), Expect = 9e-09, Method: Composition-based stats.
Identities = 36/233 (15%), Positives = 78/233 (33%), Gaps = 17/233 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+RL GR+ + R ++L +G C V G + + +V + + + I
Sbjct: 13 LRLDGRRPQESRRMTLEFGKVLGCDGCCTVMSGLATVCASVYGPREVTNRLESKYNECII 72
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
+ G + + + + R++ V LS + QI I +V++
Sbjct: 73 TCEVAIAAFAGEKRRAPQRRSKLSEEMSAAVLEVARSV---VLLSQYPNSQIHICVEVLR 129
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
DG + A I A +AL D M D + + V ++ +
Sbjct: 130 QDGSDKAACINAACLALVDASVAMRDIVYAQTVGLIHAVDVVDLTTEEMRS--------- 180
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
+ D IV ++ + + + ++ +A+ + +
Sbjct: 181 --QCPTICIAVKGHDPSSIVWMESNCR---VTSEVISRLVTVAQKSSEGVFEA 228
>gi|294654809|ref|XP_456890.2| DEHA2A12914p [Debaryomyces hansenii CBS767]
gi|199429165|emb|CAG84867.2| DEHA2A12914p [Debaryomyces hansenii]
Length = 302
Score = 64.9 bits (156), Expect = 9e-09, Method: Composition-based stats.
Identities = 30/245 (12%), Positives = 75/245 (30%), Gaps = 18/245 (7%)
Query: 7 QENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGML 66
+ +++R++ L + A GS ++ GDT + + P+ + E L
Sbjct: 54 RNDEVRKMFLKSGLVTNANGSAYLEVGDTIIEVSVFGPR--PIRGSFIDRASFSVECKFL 111
Query: 67 PRSTGNRVKREAVSG-------RQGGRSQEI--QRMIGRALRSVVDLSALGSRQIIIDCD 117
P T R + E + +L + L I I
Sbjct: 112 PYVTQPNEITFNGKATNFNNNGRPSLTNIEQKISSYLETSLLPCILLEKYPKSTIDIFVS 171
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAI---SCGMLCGYPI 174
VI + + + + + + +L ++ + S +
Sbjct: 172 VISTNSNPNSNSSLLNLINWIINCSSLALVDSGIELKDIVTSGQVNLNQKSNELTLDPIY 231
Query: 175 VDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
++ +ID +F+ + IV ++ ++ +++ ++ K
Sbjct: 232 PVDTIDKEDSIDCLVSFMNLRNDEIVGFWVEGKQEELNETIVTQLID----GCNEMSKQI 287
Query: 235 KDVIS 239
+ I+
Sbjct: 288 RSNIN 292
>gi|324510352|gb|ADY44328.1| Exosome complex exonuclease RRP45 [Ascaris suum]
Length = 431
Score = 64.9 bits (156), Expect = 1e-08, Method: Composition-based stats.
Identities = 41/259 (15%), Positives = 82/259 (31%), Gaps = 26/259 (10%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAE-GSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWI 59
+RL GR+ ++ R++ + AE G+ LV G T + T P R G +
Sbjct: 22 VRLDGRKCDEFRDLKVVVG----AEFGTSLVMAGSTKVSAQVTCNIVEPKSARGNM-GAV 76
Query: 60 TAEYGMLPRSTGNRV-----KREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIII 114
M P + + R + L ++ + QI +
Sbjct: 77 EVHVDMSPMGSPTHEDGRLGPKGIELTRVLELLCRDCGAVD--LEALCLTAYKKVWQIRV 134
Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHM----------EDCSNKFQLSQVLKGHVAAI 164
D ++QADG A A AL + K + + +
Sbjct: 135 DVHILQADGALIDCASVAAITALAHFRRPDVTVLVDSILVHGSDKKAPIPLTVYHMPICV 194
Query: 165 SCGMLCG--YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNL 222
S G+ ++D E + + + + ++ +++
Sbjct: 195 SFGIAPDGEQVVIDPTEREAMCLKGAFVVAANKRHEVCALHQTGNLL-LNEQLIVRCVDM 253
Query: 223 AKDRIADLIKLQKDVISNE 241
A R D+ +L V++++
Sbjct: 254 AIQRAIDVTELISTVLTDD 272
>gi|221053137|ref|XP_002257943.1| hypothetical protein, conserved in Apicomplexan species [Plasmodium
knowlesi strain H]
gi|193807775|emb|CAQ38480.1| hypothetical protein, conserved in Apicomplexan species [Plasmodium
knowlesi strain H]
Length = 268
Score = 64.9 bits (156), Expect = 1e-08, Method: Composition-based stats.
Identities = 40/239 (16%), Positives = 83/239 (34%), Gaps = 13/239 (5%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R++ R+ N++R++ + Y++ SC G+T +L + P T
Sbjct: 32 RINNRKNNEIRDMFIKLGTDGYSDASCFYSLGNTKILALIYGPK--PDSKNATYDKGKVF 89
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
+R + I+ ++ + SV+ L I I C +IQ
Sbjct: 90 LEIKSLNMNDDRAN--------DESDENIKNLLLECVSSVILLDQYPQCSINIKCLIIQN 141
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
DGG +A +T +AL + M D ++ ++ + + + +
Sbjct: 142 DGGCLSATLTCISLALINAQIKMRDIIVSVNVNSIICPNTKRVFHLVDVDNLEEKYYGEK 201
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
T + + + GS +F+ +++ A+ L K V+ N
Sbjct: 202 YDTNSITLGICLN-LRTVCFFHGSG--NSFNSKTLSEIISYAECACRSLGCEIKTVLKN 257
>gi|224138050|ref|XP_002322717.1| predicted protein [Populus trichocarpa]
gi|222867347|gb|EEF04478.1| predicted protein [Populus trichocarpa]
Length = 439
Score = 64.5 bits (155), Expect = 1e-08, Method: Composition-based stats.
Identities = 44/287 (15%), Positives = 84/287 (29%), Gaps = 48/287 (16%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+R R + R+ +L A GS L K G T +L +E P + G I
Sbjct: 36 IRPDARPLGRARDTTLALGAVASAHGSALAKIGSTTMLAAIKMEVMTPST-ESPDEGCIA 94
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGS----------- 109
++ M P + Q I R ++ + +
Sbjct: 95 IDFHMPPICSPIVRPGRPAEAAPVISKQL-SDTISRQVKFSASIDSPQRLILHAEISGMI 153
Query: 110 -------------RQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQV 156
+D + ADG AA+ A A + ++ ++ V
Sbjct: 154 NLKELSLVSGKAAWMAYLDIYCLDADGALFDAALLSAVAAFSHLQIPIVSLNDDGKIVLV 213
Query: 157 LKGH----------------------VAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMT 194
+ +++C + Y + D E+S ++ V+
Sbjct: 214 SEEDEGAKLEKEPVNKEKRKLTLSSIPFSLTCILHKNYILADPTAEEESIMETLVTVVLD 273
Query: 195 DSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
S +V + L + R+ +L ++ + IS E
Sbjct: 274 SSARLVSFYKPGGSVFAYTSAVKDCVALTRQRVKELQEILDEAISAE 320
>gi|226287267|gb|EEH42780.1| conserved hypothetical protein [Paracoccidioides brasiliensis Pb18]
Length = 300
Score = 64.5 bits (155), Expect = 1e-08, Method: Composition-based stats.
Identities = 37/270 (13%), Positives = 78/270 (28%), Gaps = 34/270 (12%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRN---TKHG 57
+RL GR+ N++R + + GS + G+T ++ + +
Sbjct: 14 LRLDGRRWNELRLMQAQISTNPATSGSSYLAMGNTIVICMVHGPAEGRRSEATGSAREGA 73
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEI---------QRMIGRALRSVVDLSALG 108
I+ + S +R K+ +G GG + A + +
Sbjct: 74 IISVAVNIAGFSGVDRKKKSLAAGAGGGGGGGGGDRQASTDLAIALRDAFQPHLHTHLYP 133
Query: 109 SRQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLK---------- 158
I ++ V+ +DG A I +AL D M + +
Sbjct: 134 HSTISLNISVLSSDGSLFAACINACTLALVDAGIPMPGLLCACTVGMSGRASTPATPEMK 193
Query: 159 ---------GHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERA 209
+ +S P + + + D D+ + VQ +
Sbjct: 194 RVGGINESLDPLLDMSMPEEQELPFMTVANSNPAPPGHDPMDDEEDNQMLSVVQM---ES 250
Query: 210 TFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
+ M + D + ++ V+
Sbjct: 251 GVHISYLETMFAVGFDGCKQVREILNGVLK 280
>gi|195379528|ref|XP_002048530.1| GJ11305 [Drosophila virilis]
gi|194155688|gb|EDW70872.1| GJ11305 [Drosophila virilis]
Length = 423
Score = 64.5 bits (155), Expect = 1e-08, Method: Composition-based stats.
Identities = 36/253 (14%), Positives = 70/253 (27%), Gaps = 20/253 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAE-GSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
R GR+ N+ R++ LT A+ G+ V G+T +L + + P R +
Sbjct: 29 RFDGRKSNEFRDVKLTFG----ADWGTVAVSIGETKVLAQVSCDIGTPSSARANEGTLFL 84
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLS--ALGSRQIIIDCDV 118
E R L + +D +V
Sbjct: 85 NVDIKGVAFLDEAQATHDQRFLTLNSLLERTFKSSRCLDLESLCIAVEQSVWCVRVDINV 144
Query: 119 IQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQ----------LSQVLKGHVAAISCGM 168
+ DG A+ A AL + + L + + +++ +
Sbjct: 145 LNHDGNLYDASTIAALAALMHFRRPEVSYVEEEIRTFSERERELLPLLFLHYPVSVTYCV 204
Query: 169 LC--GYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226
P+VD E++ D + + T + A R
Sbjct: 205 YKSSSQPLVDPTLLEENAADSVIVLSFNSYQELCTLNAGGTAPTNVRTIM-QCARSAASR 263
Query: 227 IADLIKLQKDVIS 239
L++ + +
Sbjct: 264 SKALVQFIRKALE 276
>gi|194381296|dbj|BAG58602.1| unnamed protein product [Homo sapiens]
Length = 164
Score = 64.5 bits (155), Expect = 1e-08, Method: Composition-based stats.
Identities = 17/76 (22%), Positives = 26/76 (34%), Gaps = 1/76 (1%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+R+ GR R + + V GS VK G T +L E P + G++
Sbjct: 22 LRVDGRGCEDYRCVEVETDVVSNTSGSARVKLGHTDILVGVKAEMGTPK-LEKPNEGYLE 80
Query: 61 AEYGMLPRSTGNRVKR 76
+T R
Sbjct: 81 FFVDCSASATPEFEGR 96
>gi|195334771|ref|XP_002034050.1| GM21652 [Drosophila sechellia]
gi|194126020|gb|EDW48063.1| GM21652 [Drosophila sechellia]
Length = 467
Score = 64.5 bits (155), Expect = 1e-08, Method: Composition-based stats.
Identities = 16/76 (21%), Positives = 26/76 (34%), Gaps = 1/76 (1%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
R GR R + L + A GS ++ +T +L E VP + + G +
Sbjct: 22 FRCDGRSRRDYRPMDLETGLVSNASGSARLRLANTDILVGVKTEIDVPNPL-TPEFGKLE 80
Query: 61 AEYGMLPRSTGNRVKR 76
+T R
Sbjct: 81 FFVDCSANATPEFEGR 96
>gi|94733276|emb|CAK04297.1| novel protein similar to mouse and human exosome component 5
(EXOSC5) [Danio rerio]
Length = 222
Score = 64.5 bits (155), Expect = 1e-08, Method: Composition-based stats.
Identities = 29/230 (12%), Positives = 63/230 (27%), Gaps = 27/230 (11%)
Query: 11 MREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRST 70
+RE + + +GS GDT +L +V + +
Sbjct: 14 LREYGSEQSLLSRPDGSSTFVQGDTSILAGVYGPAEVKVSKEIYDRATVEVLIQPKMGLP 73
Query: 71 GNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAI 130
R + R+ + + L+ + + V+ DG + +
Sbjct: 74 SVRERAREQCVRET-------------CEAALLLTLHPRSSLTVILQVVHDDGSLLSCCL 120
Query: 131 TGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDAN 190
A +AL D M + G I D ++
Sbjct: 121 NAACMALMDAGLPMSRLFC------------SVTCAISKEGQIITDPTARQEKESRALLT 168
Query: 191 FVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
F + + V S+ +FS + +++ + + +D +
Sbjct: 169 FAIDSNERNVL--MSSTTGSFSVQELQQCIAISQKASEQIFQFYRDSVKR 216
>gi|170084377|ref|XP_001873412.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164650964|gb|EDR15204.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 284
Score = 64.5 bits (155), Expect = 1e-08, Method: Composition-based stats.
Identities = 35/262 (13%), Positives = 70/262 (26%), Gaps = 29/262 (11%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+RL GR +MR ++T G G T +L + V G IT
Sbjct: 22 LRLDGRLPLEMRSPTITFGPD---LGWVECGLGKTRVLAQVEA-KMVKPAPERPFEGTIT 77
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALG--------SRQI 112
+ P ++ GR I RM+ + L+ + I
Sbjct: 78 IHSEISPMASSEYEP---GRGRPSDEEVAITRMLDKVLKRSDAVDKESLCILAGQRVWHI 134
Query: 113 IIDCDVIQADGGTRTAAITGAWVALHDCLQHMED-CSNKFQLSQVLKGHVAAISCGMLCG 171
+ + G A AL + + ++ + L ++
Sbjct: 135 RLTLHFLADAGNMLDCACLAGITALRHFRRPDVEVVGDEVIVHSPLDRAPVPLAIHHTPF 194
Query: 172 YPIVDLDYGEDSTIDVDAN------------FVMTDSGHIVEVQGSAERATFSQDHFFAM 219
+ +D N + I +Q + ++
Sbjct: 195 CFTFAFFPDITTPPVLDPNQLEQRLSAGLVSIALNAQKEICVLQKLG-GVPLETEEVLSL 253
Query: 220 LNLAKDRIADLIKLQKDVISNE 241
+N+A + +L + +
Sbjct: 254 VNVAVGKAKELHGFLDTQLRED 275
>gi|225718348|gb|ACO15020.1| Exosome complex exonuclease RRP45 [Caligus clemensi]
Length = 366
Score = 64.5 bits (155), Expect = 1e-08, Method: Composition-based stats.
Identities = 34/247 (13%), Positives = 76/247 (30%), Gaps = 18/247 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
RL GR+ ++ R+I + G+ V GDT +L + + P +R + T
Sbjct: 20 RLDGRKVDERRDICIHLG---REWGTAEVSLGDTRVLASTSCSVGEPRSVRPNEGILKTH 76
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
+ RS R R + + + + S+ S I ++ ++
Sbjct: 77 IEPLSKRSMTTEA--LVELNRVIERVLKESKCVD--MESLCISSEEKVWIISLEMTLLSD 132
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVL----------KGHVAAISCGMLCG 171
G A AL + H + +
Sbjct: 133 AGNAADCASIAGLAALCHFKRPDVTLKGDKIRIHPFYGRDPVPLAIHHHPVLSTFALYGR 192
Query: 172 YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231
++D E++ +D M I + + + + + + A + +++
Sbjct: 193 VSLLDPSREEEAVMDGKVVPGMNPYREICALHLAGQ-KLVDKALVLQLASKAAEEAKNIV 251
Query: 232 KLQKDVI 238
K+++
Sbjct: 252 NQLKNIL 258
>gi|326436033|gb|EGD81603.1| hypothetical protein PTSG_02318 [Salpingoeca sp. ATCC 50818]
Length = 221
Score = 64.5 bits (155), Expect = 1e-08, Method: Composition-based stats.
Identities = 36/201 (17%), Positives = 65/201 (32%), Gaps = 18/201 (8%)
Query: 4 SGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEY 63
G + Q R + V A+GS + G+T ++ + + +
Sbjct: 32 DG-AKAQPRSVFAEVGVVSQAKGSAFFEIGNTKVVAACYGPLSTSRRQGFQETCILDCDV 90
Query: 64 GMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADG 123
P + +Q +E+ +++ +L+ V +S I + V+Q DG
Sbjct: 91 KFSP-----FSGVKHQQTKQTALERELSQLLESSLKPCVCVSKYPKSVIQVYATVLQDDG 145
Query: 124 GTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDS 183
+A I A +AL + M D AA C G E++
Sbjct: 146 AAFSAVINAASMALANAGIEMFDLL------------AAASVCFDTSGGLHPHPTRDEEA 193
Query: 184 TIDVDANFVMTDSGHIVEVQG 204
N + G V +Q
Sbjct: 194 AKVHAYNPMRLPKGLFVSLQS 214
>gi|325115863|emb|CBZ51418.1| putative 3' exoribonuclease family, domain 1 containing protein
[Neospora caninum Liverpool]
Length = 384
Score = 64.5 bits (155), Expect = 1e-08, Method: Composition-based stats.
Identities = 13/50 (26%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Query: 1 MRLSGRQ-ENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPM 49
+R GR+ ++R +S+ +K A+GS V G T ++ + P
Sbjct: 28 VRPDGREHAQELRPLSVQLGFAKTADGSARVSQGLTSVIALVVGPVEAPP 77
>gi|149245090|ref|XP_001527079.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL
YB-4239]
gi|146449473|gb|EDK43729.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL
YB-4239]
Length = 234
Score = 64.5 bits (155), Expect = 1e-08, Method: Composition-based stats.
Identities = 35/230 (15%), Positives = 69/230 (30%), Gaps = 15/230 (6%)
Query: 15 SLTRRVSKYAEGSC--LVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGN 72
+ + A+GS + T +L + + + + + +
Sbjct: 4 EVNTSILPNADGSAELVYTNNGTKVLCSVSGPIEPKPRQELPQQASLEIIVRPARGLSTT 63
Query: 73 RVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITG 132
R K R ++ I+ R L +V Q ++ + +AAI
Sbjct: 64 REKLIEDKLRSLLQNIIIRYKYPRQLILIV-------VQFLVVDEDPVYLTNELSAAINC 116
Query: 133 AWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFV 192
+ AL D F V + L P DS V
Sbjct: 117 CFFALVDA---DVALYWSFASVAVCIKGDGSGDGEQLIKSPTGKEIAQSDSFHVVCFGIE 173
Query: 193 MTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNEV 242
++ ++ + + F++ F ML + L +LQ+ I+ +V
Sbjct: 174 NGKVEKLLLLESAGD---FTELQLFDMLGQTVGDVESLHQLQRKAITKKV 220
>gi|330981095|gb|EGH79198.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas syringae
pv. aptata str. DSM 50252]
Length = 137
Score = 64.1 bits (154), Expect = 1e-08, Method: Composition-based stats.
Identities = 23/129 (17%), Positives = 44/129 (34%), Gaps = 12/129 (9%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTH-LLTTATLEEKVP----MWIRNTKHGWITAEYGMLP 67
++L +++ A G+ LV D +L T ++ + + + T G +P
Sbjct: 15 VTLETGRIARQASGAVLVTVDDDVSVLVTVVGAKQADAGKGFFPLSVHYQEKTYAAGKIP 74
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
R GR + R+I R +R + + Q++
Sbjct: 75 GGFFKR------EGRPSEKETLTSRLIDRPIRPLFPEGFMNEVQVVCTVVSTSKKIDPDI 128
Query: 128 AAITGAWVA 136
AA+ G A
Sbjct: 129 AAMIGTSAA 137
>gi|77415113|ref|ZP_00791153.1| polyribonucleotide nucleotidyltransferase [Streptococcus agalactiae
515]
gi|77158837|gb|EAO70108.1| polyribonucleotide nucleotidyltransferase [Streptococcus agalactiae
515]
Length = 190
Score = 64.1 bits (154), Expect = 1e-08, Method: Composition-based stats.
Identities = 20/135 (14%), Positives = 44/135 (32%), Gaps = 10/135 (7%)
Query: 106 ALGSRQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAIS 165
I + +V++++G + A+I +AL ++ + +
Sbjct: 2 EEFPYAIRLVAEVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISD------- 54
Query: 166 CGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKD 225
+ D+ ED D+D T G I +Q + + L AK
Sbjct: 55 --GTNYTVLTDIQGLEDHFGDMDFKVAGTREG-ITALQMDIKIEGITPQILEEALAQAKK 111
Query: 226 RIADLIKLQKDVISN 240
+++ + I+
Sbjct: 112 ARFEILDVLHGAIAE 126
>gi|158284969|ref|XP_308011.4| AGAP002177-PA [Anopheles gambiae str. PEST]
gi|157020848|gb|EAA03766.4| AGAP002177-PA [Anopheles gambiae str. PEST]
Length = 234
Score = 64.1 bits (154), Expect = 1e-08, Method: Composition-based stats.
Identities = 24/231 (10%), Positives = 68/231 (29%), Gaps = 27/231 (11%)
Query: 11 MREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRST 70
+R + V ++ S + G T ++ A +V +++ + +Y
Sbjct: 15 LRRMVCETNVLSRSDCSAALSQGATQVMVAANGPAEVKFKNAESENCHLEVQYRSNAGQ- 73
Query: 71 GNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAI 130
+ + + ++ +I R+ VV A + I + GG +I
Sbjct: 74 ------------EDIQHRLMESLIKRSFVRVVATPAFCRSAVYIYVQEMTDRGGLLACSI 121
Query: 131 TGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDAN 190
+ +AL E + ++ A I + +
Sbjct: 122 NASCLALITSGV--ELNFTVAAVHCIMTEDGAMILDPDHKQLKLARSSFTFVFDSIGKNT 179
Query: 191 FVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
G +F+ + + ++++ + + + + ++
Sbjct: 180 VTSYVHG------------SFTFEEYEQVVSVCRKAVEKIFDFYRKQRASH 218
>gi|254169471|ref|ZP_04876288.1| 3' exoribonuclease family, domain 2 [Aciduliprofundum boonei T469]
gi|197621577|gb|EDY34175.1| 3' exoribonuclease family, domain 2 [Aciduliprofundum boonei T469]
Length = 210
Score = 64.1 bits (154), Expect = 2e-08, Method: Composition-based stats.
Identities = 32/205 (15%), Positives = 66/205 (32%), Gaps = 9/205 (4%)
Query: 35 THLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGNRVKREAVSG-----RQGGRSQE 89
T +L +E P + G +T + P ++ R R
Sbjct: 1 TRVLVGVKIEPGTP-FPDTPNMGILTTNAELAPLASPTFEPGPPGEEAIELARVVDRGIR 59
Query: 90 IQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSN 149
I L +V + ID V+ DG AA GA AL + +
Sbjct: 60 EGHAID--LEKLVIEEGEKVWIVFIDIHVLDYDGNLFDAAGYGALAALTNAIVPASRYDL 117
Query: 150 KFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERA 209
++ + ++ + + + D + E+S + G I +Q
Sbjct: 118 GEDFKLPVQHYPVPVTFAKIGDWIVADPNLDEESIASARLTVATNEEGKINAMQK-GLSG 176
Query: 210 TFSQDHFFAMLNLAKDRIADLIKLQ 234
TF+ + ++N++ + + ++
Sbjct: 177 TFTYEEVKKVINMSMNIGGKVREII 201
>gi|320582164|gb|EFW96382.1| Exosome non-catalytic core component [Pichia angusta DL-1]
Length = 311
Score = 64.1 bits (154), Expect = 2e-08, Method: Composition-based stats.
Identities = 37/240 (15%), Positives = 73/240 (30%), Gaps = 12/240 (5%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+RL GR+ QMR++ + VS+ G V G T + T E P R G
Sbjct: 23 IRLDGRKLLQMRDVQI--SVSRDEYGYAEVSLGKTKVACRVTAEITKPYEDRPFD-GIFQ 79
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSR----QIIIDC 116
+ P + +Q I R+I +A+R L
Sbjct: 80 ISTDISPICSPFFESGLTTGSKQSNDEILISRLIEKAVRRSGALDLESLCIIAGSKCWAV 139
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGH-VAAISCGMLCGYPIV 175
I + +A+ L H + + V+ + + +
Sbjct: 140 RADLQFLNYDGNFIDISSIAVMVALLHFRKPDMEIDGNNVILFDEDQRNPVPLSILHIPL 199
Query: 176 DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
+ + D + N + ++ + + S + L ++ +L ++ K
Sbjct: 200 CFTFQFYNPNDDEENIKGNLNNELILLDANLIEERLS----LGSMTLTINKNKELCQMVK 255
>gi|300121002|emb|CBK21384.2| unnamed protein product [Blastocystis hominis]
Length = 204
Score = 64.1 bits (154), Expect = 2e-08, Method: Composition-based stats.
Identities = 34/213 (15%), Positives = 65/213 (30%), Gaps = 24/213 (11%)
Query: 32 FGDTHLLTTATLEEKV---PMWIRNTKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQ 88
G+T +L + ++A M P R
Sbjct: 1 MGNTKVLAVVYGPRDAGSKSSHDIDNDKATVSAGVTMAPYCGTERRVVHMN----SRICT 56
Query: 89 EIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCS 148
E + I R V+ + I I C + QADGG + A +A+ D + D
Sbjct: 57 EYAQAIRRCFEHVILTTLYPHSTISIHCTIFQADGGELPCCLNAALLAIIDAGIDILDFQ 116
Query: 149 NKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANF-VMTDSGHIVEVQGSAE 207
+++ G + + D++Y E + + S +
Sbjct: 117 -------------VSLNVGYMDNTILFDMNYVESHLNGILLTVAYLPKSDQFTL---TTL 160
Query: 208 RATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
+ + F +L+ AK+ + + KD +
Sbjct: 161 NSNIPLELFEDVLDAAKEGCKQVYAILKDHVLE 193
>gi|256072702|ref|XP_002572673.1| ribonuclease pH related [Schistosoma mansoni]
gi|238657836|emb|CAZ28905.1| ribonuclease pH related [Schistosoma mansoni]
Length = 258
Score = 64.1 bits (154), Expect = 2e-08, Method: Composition-based stats.
Identities = 30/158 (18%), Positives = 56/158 (35%), Gaps = 2/158 (1%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R+ GR+ N++R + S Y++G + G+T ++ + + T G
Sbjct: 10 RVDGRRPNEIRRVDCQFG-SGYSDGIVFLHQGNTKVIASVVGPHAPRVKGDGTPDGATIT 68
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
P +R +S + + + I V+ QI I +VIQ+
Sbjct: 69 CQFTKPPFASTSGERRKLSSK-DRSANDFATAIEEIFSCVIRTEKYPMSQIDIFLEVIQS 127
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKG 159
DG A+ +AL D M+ + +
Sbjct: 128 DGSEFACAVNATTLALTDAGIEMDCLVSAATVGLWGSH 165
>gi|71665831|ref|XP_819881.1| ribosomal RNA processing protein 41A [Trypanosoma cruzi strain CL
Brener]
gi|70885202|gb|EAN98030.1| ribosomal RNA processing protein 41A, putative [Trypanosoma cruzi]
Length = 252
Score = 64.1 bits (154), Expect = 2e-08, Method: Composition-based stats.
Identities = 36/233 (15%), Positives = 77/233 (33%), Gaps = 17/233 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+RL GR+ + R ++L +G C V G + + +V + + + I
Sbjct: 13 LRLDGRRPQESRRMTLEFGKVLGCDGCCTVMSGLATVCASVYGPREVTNRLESKYNECII 72
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
+ G + + + + R++ V LS + QI I +V++
Sbjct: 73 TCEVAIAAFAGEKRRAPQRRSKLSEEMSAAVLEVARSV---VLLSQYPNSQIHICVEVLR 129
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
DG + A I A +AL D M D + + V ++ +
Sbjct: 130 QDGSDKAACINAACLALVDACVAMRDIVYAQTVGLIHAVDVVDLTTEEMRS--------- 180
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
+ D IV ++ + + + ++ +A+ +
Sbjct: 181 --QCPTICIAVKGHDPSSIVWMESNCR---VTSEVVSRLVTVAQKSSEGVFAA 228
>gi|124808870|ref|XP_001348430.1| exosome complex exonuclease rrp41, putative [Plasmodium falciparum
3D7]
gi|23497324|gb|AAN36869.1|AE014820_19 exosome complex exonuclease rrp41, putative [Plasmodium falciparum
3D7]
Length = 246
Score = 64.1 bits (154), Expect = 2e-08, Method: Composition-based stats.
Identities = 39/242 (16%), Positives = 83/242 (34%), Gaps = 25/242 (10%)
Query: 2 RLSGRQENQMREISLTRR---VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW 58
R+ GR+ ++ R I ++ +G + G+T L + + R +
Sbjct: 13 RIDGRKNDECRLIKISLGNGNELIDVDGFSFFEIGNTKLFAYIQGPNE---YRRPDEKCL 69
Query: 59 ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDV 118
+ + P + + ++++ ++EI I ++ L + +I I +
Sbjct: 70 VKCNVFLSPFNILEKKRKKSKDN----VTREISSYIRNICNHIILLDLYKNSEINIFLYI 125
Query: 119 IQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLD 178
I+ DGG + AA+ +AL D + A+ + +
Sbjct: 126 IERDGGLKAAAVNTCILALIDAGIA------------IKYFISASSVLYLQNNIIVDGNQ 173
Query: 179 YGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
+ +S + S +IV ++ AE D F +ML + + K I
Sbjct: 174 FEVNSGSPELTLAIDMSSNNIVLLEFDAE---VPIDIFQSMLKTCAQACIHVGNIMKLSI 230
Query: 239 SN 240
Sbjct: 231 KE 232
>gi|315640904|ref|ZP_07896000.1| ribonuclease PH/Ham1 protein [Enterococcus italicus DSM 15952]
gi|315483322|gb|EFU73822.1| ribonuclease PH/Ham1 protein [Enterococcus italicus DSM 15952]
Length = 432
Score = 64.1 bits (154), Expect = 2e-08, Method: Composition-based stats.
Identities = 46/234 (19%), Positives = 88/234 (37%), Gaps = 21/234 (8%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR GR E R+ + KYA GS + GDT + L + G+
Sbjct: 1 MRYDGRYEKSKRQTKIETNNRKYALGSATIHQGDTIVSCAVNLSDSQD--------GYQL 52
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
++ A + + + + + + L V+ + LG +++ I+ V Q
Sbjct: 53 KLVQLIA--------PMANNQELTKKQKSSELFLEQLLNGVLSDTNLGGKKLHIEVVVEQ 104
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
DG A ++AL + +N+ + +G A + P++D D
Sbjct: 105 DDGSFLAVAANAMYLALQQACDTLTRRNNQSNSG-ISQGFAAIQVAFITPEIPLIDPDRH 163
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAML----NLAKDRIADL 230
E+ V+A + ++G + VQ F + +L +A++ I +L
Sbjct: 164 EELQALVEATVCVNEAGEFLAVQFDNNGRPFGINELNGVLISGTAVAQEEIQEL 217
>gi|321478855|gb|EFX89812.1| hypothetical protein DAPPUDRAFT_40604 [Daphnia pulex]
Length = 279
Score = 64.1 bits (154), Expect = 2e-08, Method: Composition-based stats.
Identities = 32/254 (12%), Positives = 78/254 (30%), Gaps = 18/254 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R+ GR ++ R+ +T G C V G+T ++ + +VP R G +
Sbjct: 23 RVDGRSLSEQRKTCITFG---TEWGCCQVLLGNTRVMAQVSCSVQVPKSSR-ANEGMLFI 78
Query: 62 EYGMLPRSTGNRV-----KREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
M + + ++ R R + R I ++ ++ I
Sbjct: 79 NVEMSTMAAEHFEAGRLGQQGIEVNRLVERCIKDSRCIDLESLCILVEEQAWEVRVDIHI 138
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQ---------VLKGHVAAISCG 167
+ + + D + +L +
Sbjct: 139 LNHEGNLIDAATLAALGALCHFKRPDVTLDGRDVIIHQLDERDPVPLTILHHPLTLSFAL 198
Query: 168 MLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRI 227
G ++D E+ + D + + +Q S + ++ + N+A R
Sbjct: 199 FNQGICVLDPTNLEERSADGKLVMGLNAYRELCTLQISGDGVFIHKEAVISCANVAASRA 258
Query: 228 ADLIKLQKDVISNE 241
++++ K ++++
Sbjct: 259 VQMVEMLKKSLADD 272
>gi|221504332|gb|EEE30007.1| 3' exoribonuclease, putative [Toxoplasma gondii VEG]
Length = 303
Score = 64.1 bits (154), Expect = 2e-08, Method: Composition-based stats.
Identities = 45/240 (18%), Positives = 77/240 (32%), Gaps = 10/240 (4%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R GR+ +MR + + A GS V G T L G I
Sbjct: 47 RHDGRRFEEMRAMCMQTHSLAAAAGSAFVSVGKTKLNCAVYGPRPNMKHAS-QDRGSINL 105
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
E+ P +T ++A S R + ++ +AL +VV L I + V++
Sbjct: 106 EFRFAPFAT---TGKDACSERDTAH---LTTLLHQALNAVVRLDLYAKSTIAVSVLVLED 159
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
DGG +AA+T +AL D M D GH + + P +
Sbjct: 160 DGGLISAALTCIGLALADAGIEMLDVVTGASACVFSVGHPDSPPRTCVLLDPDAEERRAF 219
Query: 182 DSTIDVDANF-VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
+ + ++ S + + ML L + + + +
Sbjct: 220 ADKNCTFVDLGYCPALASVCFIRASG--TLLATESGEQMLRLCEAACYAVADEVRSCLRR 277
>gi|159464609|ref|XP_001690534.1| hypothetical protein CHLREDRAFT_114378 [Chlamydomonas reinhardtii]
gi|158280034|gb|EDP05793.1| predicted protein [Chlamydomonas reinhardtii]
Length = 302
Score = 64.1 bits (154), Expect = 2e-08, Method: Composition-based stats.
Identities = 45/262 (17%), Positives = 76/262 (29%), Gaps = 25/262 (9%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+R GR + R +++ A+GS LVK G T +L LE P G +
Sbjct: 39 VRPDGRPIGRARAVTIGAGTITTADGSALVKVGRTTVLAGVRLEIMRPDETAPAA-GALV 97
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQ--------------RMIGRALRSVVDLSA 106
M P S+ + A + + RAL V L A
Sbjct: 98 LSVEMAPFSSADYRPGRAPDHVSAVVEKLSSALLGSGAALCIAEGKAAWRALLDVYVLDA 157
Query: 107 LGSRQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDC----------SNKFQLSQV 156
G + A TR A+ + + +
Sbjct: 158 DGCVLDAALLAAVAALRDTRIPAVRNTREGHYYAARGAGGRKGGKAGEAGLVEGSPTAVG 217
Query: 157 LKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHF 216
L A++C + + +VD E+ V+ +G + + + R
Sbjct: 218 LGRLPLALTCCLYGKHVLVDPTADEERLAGCGVTVVVDGAGQLQGLYKAGGRVLADTATL 277
Query: 217 FAMLNLAKDRIADLIKLQKDVI 238
A+ R +L L +
Sbjct: 278 VRCTEAARLRHRELSALLDASL 299
>gi|119480721|ref|XP_001260389.1| exosome complex endonuclease 2/ribosomal RNA processing protein,
putative [Neosartorya fischeri NRRL 181]
gi|119408543|gb|EAW18492.1| exosome complex endonuclease 2/ribosomal RNA processing protein,
putative [Neosartorya fischeri NRRL 181]
Length = 292
Score = 63.7 bits (153), Expect = 2e-08, Method: Composition-based stats.
Identities = 41/252 (16%), Positives = 75/252 (29%), Gaps = 18/252 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+RL GR +Q+R +++T G V+ G T L+ + E P R +
Sbjct: 23 VRLDGRHADQLRPLTVTFG---EEYGHVKVQLGKTSLIVRISSEVTKPRDDRPFDGIFTI 79
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQI--IIDCDV 118
A S R+ + AL + G D V
Sbjct: 80 ALELTAMGSPAWDNGRQGDLEAYVAHVLDRLVRHSNALDTESLCILKGVSCWSIRADVHV 139
Query: 119 IQADGGTRTAAITGAWVALHDCLQHMEDCSNK------------FQLSQVLKGHVAAISC 166
DG AA G L + + L+ K
Sbjct: 140 TDYDGNLIDAACIGVMAGLQHFRRPDAVVKDGQVVVYGLDERVPVPLNITHKPLSVTFHT 199
Query: 167 GMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226
I+D E+ + D F M ++G + V + + F + ++A ++
Sbjct: 200 FDEGKRVILDATRKEEQASEADVVFGMNNAGDVCFVSKFS-GSPVDALVFVSKSSVALEK 258
Query: 227 IADLIKLQKDVI 238
+ ++ + +
Sbjct: 259 VKEINAIIDKAL 270
>gi|242786884|ref|XP_002480892.1| exosome complex endonuclease 1/ribosomal RNA processing protein,
putative [Talaromyces stipitatus ATCC 10500]
gi|218721039|gb|EED20458.1| exosome complex endonuclease 1/ribosomal RNA processing protein,
putative [Talaromyces stipitatus ATCC 10500]
Length = 284
Score = 63.7 bits (153), Expect = 2e-08, Method: Composition-based stats.
Identities = 42/253 (16%), Positives = 84/253 (33%), Gaps = 18/253 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+RL GR+ N++R + + + GS + G+T ++ T + +
Sbjct: 14 LRLDGRRWNELRLLQAQISTNSASSGSSYLSMGNTSIMCTVHGPHETSGAGS-ATEALVD 72
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
+ + + +R +R S RQ ++ + A +S + I + V+
Sbjct: 73 IDVNIAGFAGVDRKRRAGGSDRQS---SQLSTALKSAFQSHLHTYLYPHSTITVQVSVLS 129
Query: 121 ADGGTRTAAITGAWVALHDCLQHM----EDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
+DG AAI +AL D M C+ S ++ L +
Sbjct: 130 SDGSLFAAAINACTLALVDAGIPMPGLLCACTAGMSGSASTPRDLSGSDQDQLDPLLDLS 189
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVE----VQGSAERATFSQDH------FFAMLNLAKDR 226
L ++ +G V V + + + AML + D
Sbjct: 190 LPEEQELPFITIGTTTALPAGSAVGAEDDVDDDMKVSVLHMETRAHTSYLDAMLAVGIDG 249
Query: 227 IADLIKLQKDVIS 239
+ ++ + VI
Sbjct: 250 CKQIREILEGVIK 262
>gi|72012895|ref|XP_785829.1| PREDICTED: similar to LOC495942 protein [Strongylocentrotus
purpuratus]
gi|115926426|ref|XP_001179028.1| PREDICTED: similar to LOC495942 protein [Strongylocentrotus
purpuratus]
Length = 192
Score = 63.7 bits (153), Expect = 2e-08, Method: Composition-based stats.
Identities = 39/190 (20%), Positives = 62/190 (32%), Gaps = 21/190 (11%)
Query: 54 TKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQII 113
I +Y M ST R R + + + R + + QI
Sbjct: 13 HDKVIINCQYSMATFSTNERKNRPQGDRKSTE----MSLHLQRTFEATIQTHLYPRSQID 68
Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP 173
I ++QADGG A + A +A+ + M+D V A S G + P
Sbjct: 69 IFVQILQADGGNYCACVNAATLAIINAGIPMKDY-------------VCACSSGYVNNTP 115
Query: 174 IVDLDYGEDSTIDVDANFVM-TDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
+ D+ Y E+S M S I + DH +L +A D+
Sbjct: 116 LTDVSYLEESQGGPVVTVAMLPKSEQIALFKMD---NRLHVDHLEQVLEVASKGCKDMYA 172
Query: 233 LQKDVISNEV 242
+ + V
Sbjct: 173 VMNAAVKEHV 182
>gi|316973204|gb|EFV56824.1| putative exosome complex exonuclease RRP43 [Trichinella spiralis]
Length = 280
Score = 63.7 bits (153), Expect = 2e-08, Method: Composition-based stats.
Identities = 33/249 (13%), Positives = 69/249 (27%), Gaps = 18/249 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+R GR+ NQ R ++ R + A+ S + + G T + LE + + G +
Sbjct: 28 IRYDGRKTNQFRNAAVHRNMITTADSSAVARIGGTAAICGINLEIMENDTLIPSP-GLVV 86
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
+ P T + + + I++ I + + L +
Sbjct: 87 NIESVSP--TIVVSWQNEIDKTKCILKSLIEKNIVNSKSLEIFDGELFWVIYCDFVVLDC 144
Query: 121 ADGGTRTAAITGAWVAL---------------HDCLQHMEDCSNKFQLSQVLKGHVAAIS 165
A G + + D + + VA
Sbjct: 145 AGGILEVCLVALLAALQELRFPVVKVLHEDFKINLKNIKVDTAETSPVLFPNVYPVACSF 204
Query: 166 CGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKD 225
I D E I ++ + + + A+ S+ + A
Sbjct: 205 LKFGDEILICDPTDEETKLIGDAFTIIVGAQKTLCGLFKTGGAASLSKQLIDESVEHALK 264
Query: 226 RIADLIKLQ 234
R +++L
Sbjct: 265 RRRHILQLL 273
>gi|324513828|gb|ADY45664.1| Exosome complex exonuclease RRP45 [Ascaris suum]
Length = 419
Score = 63.3 bits (152), Expect = 2e-08, Method: Composition-based stats.
Identities = 41/259 (15%), Positives = 82/259 (31%), Gaps = 26/259 (10%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAE-GSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWI 59
+RL GR+ ++ R++ + AE G+ LV G T + T P R G +
Sbjct: 22 VRLDGRKCDEFRDLKVVVG----AEFGTSLVMAGSTKVSAQVTCNIVEPKSARGNM-GAV 76
Query: 60 TAEYGMLPRSTGNRV-----KREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIII 114
M P + + R + L ++ + QI +
Sbjct: 77 EVHVDMSPMGSPTHEDGRLGPKGIELTRVLELLCRDCGAVD--LEALCLTAYKKVWQIRV 134
Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHM----------EDCSNKFQLSQVLKGHVAAI 164
D ++QADG A A AL + K + + +
Sbjct: 135 DVHILQADGALIDCASVAAITALAHFRRPDVTVLVDSILVHGSDKKAPIPLTVYHMPICV 194
Query: 165 SCGMLCG--YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNL 222
S G+ ++D E + + + + ++ +++
Sbjct: 195 SFGIAPDGEQVVIDPTEREAMCLKGAFVVAANKRHEVCALHQTGNLL-LNEQLIVRCVDM 253
Query: 223 AKDRIADLIKLQKDVISNE 241
A R D+ +L V++++
Sbjct: 254 AIQRAIDVTELISTVLTDD 272
>gi|328767734|gb|EGF77783.1| hypothetical protein BATDEDRAFT_91450 [Batrachochytrium
dendrobatidis JAM81]
Length = 319
Score = 63.3 bits (152), Expect = 2e-08, Method: Composition-based stats.
Identities = 38/271 (14%), Positives = 69/271 (25%), Gaps = 49/271 (18%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGD-THLLTTA------------------ 41
+R GR R + L + A GSC V T +L
Sbjct: 18 IRADGRGSFDSRPVFLETGMITQASGSCRVTIDHGTDVLAGVKVQVADVEGRVEQYTGDI 77
Query: 42 ---TLEEKVPM----------WIRNTKHGWITAEYGMLPRSTG----NRVKREAVSGRQG 84
T E + G I P ++ ++ Q
Sbjct: 78 VEQTGTEVADDLNTSLADGNGFSNRGNVGRIVCSVECSPAASIILDSRAIEDMCNEYTQV 137
Query: 85 GRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHM 144
G L+ + + + +D ++ G + ALH+
Sbjct: 138 LNRTLNGPHGGIDLQKLCIIPGSTCWVVSVDVLIMDYGGNVLDTVLMAVRGALHNTRLPK 197
Query: 145 ED------------CSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFV 192
++ ++ + A++ + IVD ED
Sbjct: 198 TKVEETDGHFEFDIADDETEVLCGRENIPVALTLSRIGSGHIVDASPLEDMCSSSKITVF 257
Query: 193 MTDSGHIVEVQGSAERATFSQDHFFAMLNLA 223
+ SG I VQ + + + M+ A
Sbjct: 258 VNASGCICGVQKTGK-GSLEPSTLIDMIETA 287
>gi|296812847|ref|XP_002846761.1| exosome complex exonuclease RRP45 [Arthroderma otae CBS 113480]
gi|238842017|gb|EEQ31679.1| exosome complex exonuclease RRP45 [Arthroderma otae CBS 113480]
Length = 292
Score = 63.3 bits (152), Expect = 2e-08, Method: Composition-based stats.
Identities = 37/224 (16%), Positives = 72/224 (32%), Gaps = 22/224 (9%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+RL GR+ +Q+R + LT G+ V+ G T +L + E P R+ G T
Sbjct: 23 VRLDGRKFDQLRSVDLTFG---EEHGTVKVQLGKTAVLVRISAELTTPRPERDCD-GIFT 78
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
+ + +GR + R + + + R +D + +
Sbjct: 79 VVVEL-----NDMALPGYETGRPSELEVSLSRTLDKIV----------RRSNALDTESLC 123
Query: 121 ADGGTRTAAITGA-WVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD--L 177
G I + D C + + + G + + + +
Sbjct: 124 IAKGRICWNIRADIHILDCDGGLIDASCLAIMAGLLHFRLPESTVRDGEVTVFSMEEKVP 183
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLN 221
+ I + F + D G IV + +A S+ L+
Sbjct: 184 VSLNLTKIPLAVTFNLYDEGRIVLLDATAGEEVVSEGSLVIALD 227
>gi|67539882|ref|XP_663715.1| hypothetical protein AN6111.2 [Aspergillus nidulans FGSC A4]
gi|40738896|gb|EAA58086.1| hypothetical protein AN6111.2 [Aspergillus nidulans FGSC A4]
gi|259479699|tpe|CBF70162.1| TPA: exosome complex endonuclease 2/ribosomal RNA processing
protein, putative (AFU_orthologue; AFUA_2G08860)
[Aspergillus nidulans FGSC A4]
Length = 295
Score = 63.3 bits (152), Expect = 3e-08, Method: Composition-based stats.
Identities = 42/262 (16%), Positives = 81/262 (30%), Gaps = 30/262 (11%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+RL GR +Q+R ++L+ G V+ G T L+ + E P R +
Sbjct: 23 VRLDGRGADQLRPLTLSFG---EEYGHVKVQLGKTSLVVRISAEVAKPHDDRPFDGIFNI 79
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSV--------VDLSALGSRQI 112
A S +GRQG + ++ R +R L + I
Sbjct: 80 AMELTAMGSPA------WENGRQGDLETYVTNVLDRVIRHSNALDTESLCILKGVSCWTI 133
Query: 113 IIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNK------------FQLSQVLKGH 160
D + DG A+ G L + + L+ K
Sbjct: 134 RADVHITDYDGNLIDASCIGVMAGLQHFRRPDAVVKDGQVIVYGLDERVPAPLNITHKPL 193
Query: 161 VAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAML 220
I+D E+ + D M ++G + + + + F
Sbjct: 194 SVTFHTFDDGKLAILDATRKEEQASEADVVIGMNNAGDVCYLSKF-QGSPVDALVFITKT 252
Query: 221 NLAKDRIADLIKLQKDVISNEV 242
+LA +++ + + + ++
Sbjct: 253 SLALEKVKYINGIIDKALQADL 274
>gi|324510452|gb|ADY44370.1| Exosome complex exonuclease RRP42 [Ascaris suum]
Length = 303
Score = 63.3 bits (152), Expect = 3e-08, Method: Composition-based stats.
Identities = 36/270 (13%), Positives = 63/270 (23%), Gaps = 30/270 (11%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR GR R I + V GS V+ T LL E V I
Sbjct: 21 MRADGRSLFDYRPIIVETGVLATTNGSARVRLASTDLLIGVKAELTVVEDFE-HYRNRIN 79
Query: 61 AEYGMLPRSTGNRVKREAVSGRQG------------------GRSQEIQRMIGRALRSVV 102
+T V R + + +V
Sbjct: 80 FFVDCSANATPLFVGRGGEDLAVEVTSALDVAYDNPYVLPDLKKLILSPMHAWKLYVDIV 139
Query: 103 DLSALGSRQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVA 162
L G+ V A T + C + + + +++
Sbjct: 140 ILECGGNILDAAGIGVKAALRNTEICNVIVRPADEGKCAVDLANDNTVWKMDVSRAPLFV 199
Query: 163 AISCGMLCGYPIVDLDYGEDSTIDVDANF-----------VMTDSGHIVEVQGSAERATF 211
++ L S V ++ + IV + + +
Sbjct: 200 SVHKLGEANLVDASLTEEACSRCTVSVAVSPTPECSQDGTMLNEEDCIVTMVRQSGGGSL 259
Query: 212 SQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
D M+ + + +L K + E
Sbjct: 260 EMDSLDEMVRMGVRMVDELQKALDKRLKEE 289
>gi|114052969|ref|NP_001040497.1| exosc7 protein [Bombyx mori]
gi|95103140|gb|ABF51511.1| exosc7 protein [Bombyx mori]
Length = 277
Score = 63.3 bits (152), Expect = 3e-08, Method: Composition-based stats.
Identities = 30/212 (14%), Positives = 49/212 (23%), Gaps = 11/212 (5%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
R GR R + L V +A GS ++ +T +L E P G I
Sbjct: 22 FRSDGRSNIDYRPMELETDVVSHASGSARLRLANTDILVGIKTEIDTPK-PDKPDMGKIE 80
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
+T R + I + RA S + +
Sbjct: 81 FLVDGSANATPEFEGRGGENLASS-----ISNTMQRAYHSSQAFD-----LKQLCIVEGK 130
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
+ + + F L + + D+
Sbjct: 131 QCWKLYVDILILECGGNWFDAVSLATKAALFNTRIPLVKALLMDGGNVDLQLSDDPYDFK 190
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFS 212
+ G V SAE + S
Sbjct: 191 FLDVGSAPLLVTLCKIGEKCVVDPSAEEESCS 222
>gi|221119375|ref|XP_002161086.1| PREDICTED: similar to predicted protein [Hydra magnipapillata]
Length = 221
Score = 62.9 bits (151), Expect = 3e-08, Method: Composition-based stats.
Identities = 32/228 (14%), Positives = 69/228 (30%), Gaps = 27/228 (11%)
Query: 11 MREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRST 70
MRE+ + +GS + G T +++ +V M T I
Sbjct: 1 MREMECNLAYLEKPDGSVTLSHGQTKVISAVYGPVEVKMNKEITDKATIICILK------ 54
Query: 71 GNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAI 130
K + ++ + + + +A+ + + I + ++ G + I
Sbjct: 55 ---PKIGMSAVKEKVMEKIVAKTCEQAIIASL----HPRSAIQVVLQIVHDSGSLLSCLI 107
Query: 131 TGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDAN 190
A ++L M + + Y + V
Sbjct: 108 NAACLSLVHAGLPMRNMIV-----------SVCCAVTNNDEYLVDPTIAEIQDCKCVLTF 156
Query: 191 FVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
+ + IV + S F+ + +F L LAK D++ Q+ +
Sbjct: 157 AFESKNLDIVSIFTSG---LFTVEQYFQCLQLAKASAPDILNFQRQSV 201
>gi|68065138|ref|XP_674553.1| exosome complex exonuclease [Plasmodium berghei strain ANKA]
gi|56493201|emb|CAH99095.1| exosome complex exonuclease rrp41, putative [Plasmodium berghei]
Length = 246
Score = 62.9 bits (151), Expect = 4e-08, Method: Composition-based stats.
Identities = 40/242 (16%), Positives = 88/242 (36%), Gaps = 25/242 (10%)
Query: 2 RLSGRQENQMREISLTRR---VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW 58
RL GR+ N+ R I + + A+G + G+T +L+ ++ + +
Sbjct: 13 RLDGRKCNEYRLIKINMGNQNIFNDADGFAFYEIGNTKILSYIQGPTELK---KTDEKCS 69
Query: 59 ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDV 118
I + + P + ++ K++ + EI I +++ L + +I I +
Sbjct: 70 IKCDVFLSPFNVYDKRKKKTKDN----ITNEISAYIRNICENIILLDLYKNSEINIFLYI 125
Query: 119 IQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLD 178
I+ DGG + AAI +AL D + A + +
Sbjct: 126 IERDGGIKHAAINTCILALIDAGIA------------IKYFISACSVLYLQNKIIVDGNQ 173
Query: 179 YGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
+S + ++ I+ ++ AE D F +M+ D ++ ++ + +
Sbjct: 174 LEINSGSPELTMVIELNTHKIILLEFDAE---VPIDIFESMVQTCIDSCVNIGRVMQLTV 230
Query: 239 SN 240
Sbjct: 231 KE 232
>gi|121698408|ref|XP_001267812.1| exosome complex endonuclease 2/ribosomal RNA processing protein,
putative [Aspergillus clavatus NRRL 1]
gi|119395954|gb|EAW06386.1| exosome complex endonuclease 2/ribosomal RNA processing protein,
putative [Aspergillus clavatus NRRL 1]
Length = 292
Score = 62.9 bits (151), Expect = 4e-08, Method: Composition-based stats.
Identities = 39/256 (15%), Positives = 75/256 (29%), Gaps = 18/256 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+RL GRQ +Q+R + +T G V+ G T L+ + E P R +
Sbjct: 23 VRLDGRQADQLRPLKVTFG---EEYGHVKVQLGKTSLIVRISSEVTKPRDDRPFDGLFAI 79
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQI--IIDCDV 118
A S R+ + AL + G D +
Sbjct: 80 ALELTAMGSPAWDNGRQGDLEAYVAHVLDRVVRHSNALDTESLCILKGVSCWSIRADIHI 139
Query: 119 IQADGGTRTAAITGAWVALHDCLQHMEDCSNK------------FQLSQVLKGHVAAISC 166
DG AA G L + + L+ K
Sbjct: 140 TDYDGNLIDAACIGVMAGLQHFRRPDAVVKDGQVIVYGLDERVPVPLNITHKPLSVTFHT 199
Query: 167 GMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226
I+D E+ + D + ++G + V + + F ++A ++
Sbjct: 200 FDEGKRVILDATRKEEQASEADVVIGVNNAGDVCFVSKFS-GSPVDALVFVTKSSVALEK 258
Query: 227 IADLIKLQKDVISNEV 242
+ ++ + + ++
Sbjct: 259 VKEINGIIDKALQTDL 274
>gi|254571745|ref|XP_002492982.1| Protein involved in rRNA processing [Pichia pastoris GS115]
gi|238032780|emb|CAY70803.1| Protein involved in rRNA processing [Pichia pastoris GS115]
gi|328353004|emb|CCA39402.1| Polyribonucleotide nucleotidyltransferase [Pichia pastoris CBS
7435]
Length = 221
Score = 62.9 bits (151), Expect = 4e-08, Method: Composition-based stats.
Identities = 34/226 (15%), Positives = 65/226 (28%), Gaps = 19/226 (8%)
Query: 17 TRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGNRVKR 76
+ +GS + G+ ++ + T + I R K
Sbjct: 7 QTSLLNKVDGSSTISIGEVKVICSVTGPIEAKPRQELPTQCAIEVNIRPEVGVGSTREKN 66
Query: 77 EAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVA 136
R + R L V II + + A I GA++A
Sbjct: 67 MEDKLRVVLNGTINKFQYPRQLIQV-------HLHIISKSQATENNLKDLHACINGAYLA 119
Query: 137 LHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDS 196
L D + A I+ L P + S V + +
Sbjct: 120 LIDANISLLSS---------FLSTYAVINDDRLIFNPTSEQIQSSISHHLVCFDIKSGRA 170
Query: 197 GHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNEV 242
++ V E F++ +L+ + + I + K+ + I+ +V
Sbjct: 171 DELLFVDSVGE---FTEGELMTVLDQSIEEIESMNKIVRKTITEKV 213
>gi|45184700|ref|NP_982418.1| AAL124Wp [Ashbya gossypii ATCC 10895]
gi|44980046|gb|AAS50242.1| AAL124Wp [Ashbya gossypii ATCC 10895]
Length = 305
Score = 62.9 bits (151), Expect = 4e-08, Method: Composition-based stats.
Identities = 28/212 (13%), Positives = 63/212 (29%), Gaps = 5/212 (2%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+RL GR +Q R++ + G + G T + + + P + G
Sbjct: 23 LRLDGRTFDQFRDVEIELG---SEYGDVTITMGKTKIHCRISAQIAQP-YEDRPFEGLFV 78
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
M P + + S+ I++ + R+ ++ + +
Sbjct: 79 ISTEMSPMAGAQFENGNNTGEDEVLISRMIEKAVRRSSAMDLEGLCIIAGSKCWAIRADV 138
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISC-GMLCGYPIVDLDY 179
I + +A+ L H Q QV+ V + + V + +
Sbjct: 139 HFLDCDGGFIDASCIAVMTGLLHFRKPDVSVQGEQVIVHPVDEREPVALGILHIPVCVTF 198
Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATF 211
+ D + N + I + + +
Sbjct: 199 SFYNPEDAEVNVKGDSADEIAIIDATLKEELL 230
>gi|171683893|ref|XP_001906888.1| hypothetical protein [Podospora anserina S mat+]
gi|170941907|emb|CAP67559.1| unnamed protein product [Podospora anserina S mat+]
Length = 358
Score = 62.9 bits (151), Expect = 4e-08, Method: Composition-based stats.
Identities = 15/43 (34%), Positives = 21/43 (48%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE 44
R +GR +Q R I + A GS LV+ GDT ++ E
Sbjct: 46 RNNGRAPHQSRPIQINTSSLSQAHGSSLVRTGDTTVICGVRGE 88
>gi|260948598|ref|XP_002618596.1| hypothetical protein CLUG_02055 [Clavispora lusitaniae ATCC 42720]
gi|238848468|gb|EEQ37932.1| hypothetical protein CLUG_02055 [Clavispora lusitaniae ATCC 42720]
Length = 239
Score = 62.6 bits (150), Expect = 4e-08, Method: Composition-based stats.
Identities = 30/228 (13%), Positives = 64/228 (28%), Gaps = 6/228 (2%)
Query: 16 LTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGNRVK 75
+ +GS + G+T ++ + T + + + K
Sbjct: 7 VELSPLSQVDGSARLTAGNTKVVVSVTGPIEPKPRQELPTQASLEIVVRPSRGLAATKEK 66
Query: 76 REAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWV 135
R +S ++ R L VV V G TA +
Sbjct: 67 VLEDLLRSVLQSAIVRYKYPRQLIQVVVQFLATDVDAEGVVLVSGDSAGGETACNELSAA 126
Query: 136 ALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTD 195
++ F + +A + G L P + S V +
Sbjct: 127 LNCCFFALVDANVALFNSFAAVA--LAVAADGALVPNPPLRALKTAASHHVVCFDVRSRK 184
Query: 196 SGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI-KLQKDVISNEV 242
+ ++ + S +FS+ A++ A ++ Q+ + +V
Sbjct: 185 ASKLLLAESSG---SFSEQDLLAVVERASTLCEEIHTSYQRPAVERKV 229
>gi|70932569|ref|XP_737786.1| exosome complex exonuclease rrp41 [Plasmodium chabaudi chabaudi]
gi|56513462|emb|CAH83474.1| exosome complex exonuclease rrp41, putative [Plasmodium chabaudi
chabaudi]
Length = 227
Score = 62.6 bits (150), Expect = 4e-08, Method: Composition-based stats.
Identities = 40/237 (16%), Positives = 84/237 (35%), Gaps = 25/237 (10%)
Query: 2 RLSGRQENQMREISLTRR---VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW 58
RL GR+ ++ R I + + A+G + G+T +L+ ++
Sbjct: 13 RLDGRKCDEYRLIKINMGNQNIFTDADGFAFYEIGNTKILSYIQGPTELKKSDD---KCS 69
Query: 59 ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDV 118
I + + P + ++ K++ + EI I +++ L + +I I +
Sbjct: 70 IKCDVFLSPFNVYDKRKKKTKDN----ITNEISAYIRNICENIILLDLYKNSEINIFLYI 125
Query: 119 IQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLD 178
I+ DGG + AAI +AL D + A + +
Sbjct: 126 IERDGGIKHAAINTCILALIDAGIA------------IKYFISACSVLYLQNQIIVDGNQ 173
Query: 179 YGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
+S + ++ I+ ++ AE D F +M+ D ++ + K
Sbjct: 174 LEINSGSPELTMVIELNTHKIILLEFDAE---VPIDIFESMVQTCIDSCVNIGGVMK 227
>gi|194740918|ref|XP_001952937.1| GF17467 [Drosophila ananassae]
gi|190625996|gb|EDV41520.1| GF17467 [Drosophila ananassae]
Length = 234
Score = 62.6 bits (150), Expect = 4e-08, Method: Composition-based stats.
Identities = 32/234 (13%), Positives = 73/234 (31%), Gaps = 31/234 (13%)
Query: 9 NQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPR 68
+Q+R + +GS + G + +++ +V + ++ Y
Sbjct: 12 DQLRRMHCEFNPLSRCDGSVMYSQGASVVISAVLGPVEVKSQNLSIDGSYLECNYRPKAG 71
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
+ + + I L V A ++ I ++ G
Sbjct: 72 L-------------PQVKERLREAAIKDILDLTVLSEAYPRSKMSIQVQELEDRGSMDAC 118
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG-YPIVDLDYGEDSTIDV 187
A+ A +A+ LK AA+ C + ++D D+ E +
Sbjct: 119 AVNSACLAM-------------LIGGLPLKCSFAAVHCIIDEQGDYVLDPDHSETAHQRA 165
Query: 188 DANFVMTD-SGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
F G+++ +Q + F + F + L + ++ K + I+
Sbjct: 166 SFTFAFDSMEGNLLLIQ---TKGAFKIEQFNDIECLCRSASQEIFKFYRSQIAK 216
>gi|68533900|gb|AAH99290.1| LOC733302 protein [Xenopus laevis]
Length = 224
Score = 62.6 bits (150), Expect = 4e-08, Method: Composition-based stats.
Identities = 31/230 (13%), Positives = 64/230 (27%), Gaps = 27/230 (11%)
Query: 11 MREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRST 70
+RE + + +GS GDT +L ++ + +
Sbjct: 17 LREYGCEQSLLSRPDGSATFLQGDTSVLAGVYGPAEIKVSREIHNKATLEVILRPKTGL- 75
Query: 71 GNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAI 130
+ + +++I SV+ S I I +I G + +
Sbjct: 76 ------------PAIQEKNHEQLIRETCESVIIGSLHPRTSITIVLQIISDAGSLLSCCL 123
Query: 131 TGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDAN 190
A + L D M + G++ + ++S V
Sbjct: 124 NAACMGLMDAGLPMRSLFCGVTCALDNDGNI----------TLDPNDRQQKESRAVVTFA 173
Query: 191 FVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
T+ V ++ R +S + A+ L + +D I
Sbjct: 174 IESTERK----VLMTSSRGLYSAAELQQCIAAAQLASEKLFQFYRDFIRR 219
>gi|302757249|ref|XP_002962048.1| hypothetical protein SELMODRAFT_77552 [Selaginella moellendorffii]
gi|302775248|ref|XP_002971041.1| hypothetical protein SELMODRAFT_94605 [Selaginella moellendorffii]
gi|300161023|gb|EFJ27639.1| hypothetical protein SELMODRAFT_94605 [Selaginella moellendorffii]
gi|300170707|gb|EFJ37308.1| hypothetical protein SELMODRAFT_77552 [Selaginella moellendorffii]
Length = 377
Score = 62.6 bits (150), Expect = 5e-08, Method: Composition-based stats.
Identities = 35/245 (14%), Positives = 71/245 (28%), Gaps = 33/245 (13%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+R+ GR R + +G+ V+ G+T +L + + P + G +
Sbjct: 23 LRVDGRAPFDSRRSLINF---AREDGAVEVQQGETRVLAVVSAQLGTP-YPDRPNEGSLV 78
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSA--------LGSRQI 112
P + + GR G + E+ R+I R LR + +
Sbjct: 79 INTEFSPMADPSFEP-----GRPGELAVELGRVIDRGLRESRAVDTESLCVLAGKAVWFL 133
Query: 113 IIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCS-------------NKFQLSQVLKG 159
ID ++ G A A L + + L L
Sbjct: 134 RIDIHILDNGGNLIDVANLAALAGLLSFRRPECSIGGADGQDITIHPPEVREPLPLTLHH 193
Query: 160 HVAAISCGM--LCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFF 217
A++ G ++D E++ + + G + +Q +
Sbjct: 194 LPIAVTFGFLADGELVVLDPSLKEEAVMGGRLTVTVNAHGEVCAIQKGG-GVAVRMNEIL 252
Query: 218 AMLNL 222
+ +
Sbjct: 253 RCMRI 257
>gi|41614907|ref|NP_963405.1| exosome complex RNA-binding protein Rrp42 [Nanoarchaeum equitans
Kin4-M]
gi|40068631|gb|AAR38966.1| NEQ111 [Nanoarchaeum equitans Kin4-M]
Length = 218
Score = 62.6 bits (150), Expect = 5e-08, Method: Composition-based stats.
Identities = 31/221 (14%), Positives = 67/221 (30%), Gaps = 23/221 (10%)
Query: 3 LSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAE 62
+ R + R I + ++ + G+T ++ ++ E+ PM +
Sbjct: 14 IDNRPLLEYRPIKIKEDQNR-----VWLSLGNTQVIAGLSISEEEPM---EKGKANLIVN 65
Query: 63 YGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQAD 122
P + G + + R+I RALRS ++ D
Sbjct: 66 ADFSPIAGKE-----YFQGPPTEQDLILARLIDRALRSSNAIALEKHVIDENKVKSFYID 120
Query: 123 GGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGED 182
A + + + +N + IS VD E+
Sbjct: 121 VIVLEDDGN-ILDASMLAVVKLLEKANLL------ERKPLYISFYKYKNIIFVDPTKEEE 173
Query: 183 STIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLA 223
+ + + +IV +Q +F ++ +++LA
Sbjct: 174 QISNAKISIAIDGE-NIVSIQKD--YGSFDENEIEELIDLA 211
>gi|302899909|ref|XP_003048154.1| hypothetical protein NECHADRAFT_40151 [Nectria haematococca mpVI
77-13-4]
gi|256729086|gb|EEU42441.1| hypothetical protein NECHADRAFT_40151 [Nectria haematococca mpVI
77-13-4]
Length = 340
Score = 62.6 bits (150), Expect = 5e-08, Method: Composition-based stats.
Identities = 13/47 (27%), Positives = 19/47 (40%), Gaps = 1/47 (2%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGD-THLLTTATLEEK 46
+R GR Q R ++ V GS V+F D T + E +
Sbjct: 26 IRPDGRTPTQFRPLTAETGVLPGTNGSARVQFADGTEAIVGVKAEIE 72
>gi|119628985|gb|EAX08580.1| exosome component 8, isoform CRA_b [Homo sapiens]
Length = 108
Score = 62.6 bits (150), Expect = 5e-08, Method: Composition-based stats.
Identities = 12/42 (28%), Positives = 20/42 (47%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL 43
R GR+ + R ++ A+GS LVK G+T ++
Sbjct: 60 RPDGRELGEFRTTTVNIGSISTADGSALVKLGNTTVICGVKA 101
>gi|58266980|ref|XP_570646.1| hypothetical protein [Cryptococcus neoformans var. neoformans
JEC21]
gi|134110456|ref|XP_776055.1| hypothetical protein CNBD1030 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50258723|gb|EAL21408.1| hypothetical protein CNBD1030 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|57226879|gb|AAW43339.1| conserved hypothetical protein [Cryptococcus neoformans var.
neoformans JEC21]
Length = 262
Score = 62.6 bits (150), Expect = 5e-08, Method: Composition-based stats.
Identities = 51/241 (21%), Positives = 87/241 (36%), Gaps = 21/241 (8%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVP-MWIRNTKHGWI 59
+R R+ ++R S ++GS G T + + + + + +
Sbjct: 14 LRQDARRPYELRSTSFQLSTHSSSDGSSTATQGLTTVEVSVFGPREPRNRGLASHDRAVV 73
Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119
+ E G++P + G +R R QEI I + V+ +I I V+
Sbjct: 74 SVEVGVVPWAAGAGARRTRGDKRL----QEIGAAIRQTFEPVIMTHLYPRSEIAIHVQVL 129
Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179
ADGG +I +AL D + D V++IS G+ P++DL
Sbjct: 130 SADGGILPTSINATTLALIDAGIALLDY-------------VSSISIGLHLLQPLLDLSQ 176
Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
E+S + + SG I Q D F ML L + L + V+
Sbjct: 177 PEESDLPSLVIASLPSSGKITLAQM---ETRLHVDRFEEMLTLGVEACKVLKEEMDGVVK 233
Query: 240 N 240
+
Sbjct: 234 D 234
>gi|296412418|ref|XP_002835921.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295629718|emb|CAZ80078.1| unnamed protein product [Tuber melanosporum]
Length = 278
Score = 62.2 bits (149), Expect = 5e-08, Method: Composition-based stats.
Identities = 38/215 (17%), Positives = 74/215 (34%), Gaps = 16/215 (7%)
Query: 28 CLVKFGDTHLLTTATLEEKVPM-WIRNTKHGWITAEYGMLPRSTGNRVKREAVSGRQGGR 86
V+ G+T ++ + + RN++ +T + S +R KR R
Sbjct: 69 SYVEHGNTKVICSVNGPIEPRAASARNSERATVTVDVCFAAFSGTDRKKRGKSDKRVLE- 127
Query: 87 SQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMED 146
+Q + R + + + ++ I ++ DG + A +AL D M D
Sbjct: 128 ---MQSALSRTFATTLLTTLHPRSEVHISLHILSQDGSILATCVNAATLALVDAGVPMSD 184
Query: 147 CSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSA 206
V VA+ + G P++D+ E+ + + S I +Q
Sbjct: 185 Y--------VTACTVASYTNPDESGEPLLDMSSAEEMDLPGITLATVGRSDKISLLQLET 236
Query: 207 ERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
+ + ML + D + +L VI
Sbjct: 237 KVR---LERLEGMLAVGIDGCGKIRQLLDGVIREH 268
>gi|145246552|ref|XP_001395525.1| exosome complex endonuclease 2/ribosomal RNA processing protein
[Aspergillus niger CBS 513.88]
gi|134080243|emb|CAK97146.1| unnamed protein product [Aspergillus niger]
Length = 292
Score = 62.2 bits (149), Expect = 5e-08, Method: Composition-based stats.
Identities = 41/262 (15%), Positives = 82/262 (31%), Gaps = 30/262 (11%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+RL GR +Q+R ++++ G V+ G T L+ + E P R +
Sbjct: 23 VRLDGRGFDQLRPLNVSFG---EEYGHVKVQLGKTSLIVRISAEVTKPHDDRPFDGLFTI 79
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSV--------VDLSALGSRQI 112
A S +GRQG + ++ R +R L + I
Sbjct: 80 AMELTAMGSPA------WDNGRQGDFETYVTNVLDRVVRHSNALDTESLCILKGVSCWSI 133
Query: 113 IIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQL------------SQVLKGH 160
D V DG AA G L + + + + K
Sbjct: 134 RADVHVTDYDGNLIDAACIGIMAGLQHFRRQDAVVKDGQVIVYRLDERVPVALNITHKPL 193
Query: 161 VAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAML 220
I+D E+ + D + ++G + V + + F
Sbjct: 194 SVTFHTFDEGKRVIIDATRKEEQAAEADVVIGINNAGDVCFVSKFS-GSPVDAMVFVDKT 252
Query: 221 NLAKDRIADLIKLQKDVISNEV 242
++A +++ ++ + + ++
Sbjct: 253 SVALEKVKEINAIIDKALQADL 274
>gi|126329382|ref|XP_001372178.1| PREDICTED: similar to Chain G, Structure Of The Human Rna Exosome
Composed Of Rrp41, Rrp45, Rrp46, Rrp43, Mtr3, Rrp42,
Csl4, Rrp4, And Rrp40 [Monodelphis domestica]
Length = 237
Score = 62.2 bits (149), Expect = 5e-08, Method: Composition-based stats.
Identities = 28/228 (12%), Positives = 63/228 (27%), Gaps = 27/228 (11%)
Query: 11 MREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRST 70
+R + + + +GS GDT +L +V + +
Sbjct: 30 LRHFACEQNLLSRPDGSASFLQGDTSVLVGVYGPAEVKVSKEIFNKATLEVILKPKIGL- 88
Query: 71 GNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAI 130
G + +R+I +VV + I + ++ G +
Sbjct: 89 ------------PGVAEKSRERLIRTTCEAVVLGTLHPRTSITVVLQIVSDAGSLLACCL 136
Query: 131 TGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDAN 190
A +AL D + + L G + +++ +
Sbjct: 137 NAACLALVDAGVPLRALFCGVTCALDLDGGLV----------LDPTAKQEKEARAILTFA 186
Query: 191 FVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
T+ + S + +S F L A+ + + +D +
Sbjct: 187 LDSTEQKLL----MSTTKGLYSVAEFQQCLAAAQHASLHIFRFYRDSL 230
>gi|170087298|ref|XP_001874872.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164650072|gb|EDR14313.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 255
Score = 62.2 bits (149), Expect = 6e-08, Method: Composition-based stats.
Identities = 33/238 (13%), Positives = 64/238 (26%), Gaps = 19/238 (7%)
Query: 5 GRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYG 64
R +R I L + A GS ++ +T + + + + G + +
Sbjct: 37 NRASVDIRPIFLQPGLINQATGSAYIETQNTKIACAVFGPRQAKN-VAFNEKGRLNVDVK 95
Query: 65 MLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGG 124
P S R + + I I +A+ S V L L I I +
Sbjct: 96 FAPFSCDRRRAPMRDAEDRS-----IAMAIHQAISSSVRLDVLPKSVIDIFITI------ 144
Query: 125 TRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDST 184
+ I G A + V AA+ + +
Sbjct: 145 VESDGIEGCVAAGVIVASTALTDAGIEIFGLVASCSAAAVGEDIWLD----PSLRESQES 200
Query: 185 IDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNEV 242
M + + + T A ++ R D+ + V+ + +
Sbjct: 201 RGTLVLSCMPALSTVSSIWQTGNMNT---GDVLACMDACNSRCTDIHSVIAQVLLDSI 255
>gi|240279480|gb|EER42985.1| exonuclease RRP41 [Ajellomyces capsulatus H143]
Length = 265
Score = 62.2 bits (149), Expect = 6e-08, Method: Composition-based stats.
Identities = 25/148 (16%), Positives = 50/148 (33%), Gaps = 4/148 (2%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE-EKVPMWIRNTKHGWI 59
+RL GR+ N++R + + + GS + G+T ++ E
Sbjct: 14 LRLDGRRWNELRLMQAQISTNPASSGSSYLSMGNTVVICMVHGPAEGRRSEATGPAREGA 73
Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRSQ---EIQRMIGRALRSVVDLSALGSRQIIIDC 116
+ +++ + GG Q ++ + A + + I +
Sbjct: 74 VVSVAVNVAGFSGVDRKKKSATGGGGDRQASTDLAFALRDAFQPHLHTHIYPHSTISLHV 133
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHM 144
V+ +DG A I +AL D M
Sbjct: 134 SVLSSDGSLFAACINACTLALVDAGIPM 161
>gi|326471461|gb|EGD95470.1| 3' exoribonuclease [Trichophyton tonsurans CBS 112818]
gi|326481764|gb|EGE05774.1| 3' exoribonuclease [Trichophyton equinum CBS 127.97]
Length = 334
Score = 62.2 bits (149), Expect = 6e-08, Method: Composition-based stats.
Identities = 33/278 (11%), Positives = 68/278 (24%), Gaps = 52/278 (18%)
Query: 6 RQENQMREISLTRRVSKYAEGSCLVKF-------GDT--------HLLTTATLEEKVPMW 50
R ++R+I L V A GS + G + L+ + + +
Sbjct: 39 RDARELRKIYLKTGVIPSASGSAYFELHPSNSSHGGSLIPPSSSLKLICSVNGPKPLSRS 98
Query: 51 IRNTKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSR 110
+ + ++A P + R +++ + ALR +
Sbjct: 99 TPFSPNLLLSAHVKFAPFAGRRRRAHVRDM-----NERDLGVHLENALRGAIIGDRWPKS 153
Query: 111 QIIIDCDVIQ----------------------ADGGTRTAAITGAWVALHDCLQHMEDCS 148
+ I +++ +T A A+ D D
Sbjct: 154 GLDITIMILEGEDDRWWGDMSTAETLTGSDGWGMMNVLAHCVTVASAAIADARIDCLDLV 213
Query: 149 NKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAER 208
+ V + + + M I E+ +
Sbjct: 214 AGGVAAVVDTCSSGEGATSSTKMVVLDPDPSEHLNISSSCVVGYMPSLDEITELWLKGDM 273
Query: 209 ATFSQD----------HFFAMLNLAKDRIADLIKLQKD 236
S D + AK + LI+ K+
Sbjct: 274 PGASSDGTYDSPNHDALMDGAIAAAKASHSVLIEAVKE 311
>gi|115443084|ref|XP_001218349.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
gi|114188218|gb|EAU29918.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
Length = 294
Score = 62.2 bits (149), Expect = 6e-08, Method: Composition-based stats.
Identities = 35/258 (13%), Positives = 77/258 (29%), Gaps = 20/258 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHL--LTTATLEEKVPMWIRNTKHGW 58
+RL GR+ +Q+R ++++ G V+ G T + + + E P R +
Sbjct: 23 VRLDGREPDQLRPLTVSFG---EEYGHVKVQLGKTRVSLIVRISSEVTKPRDDRPFDGIF 79
Query: 59 ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQI--IIDC 116
A S R+ + AL + G D
Sbjct: 80 TIALELTAMGSPAWDNGRQGDLETYVTNVLDRVVRHSNALDTESLCILKGVSCWSVRADV 139
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQL------------SQVLKGHVAAI 164
+ DG AA G L + + + + K
Sbjct: 140 HITDYDGNLIDAACIGVMAGLQHFRRPDAVVKDGQVIVYGVDERVPVALNITHKPLSVTF 199
Query: 165 SCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAK 224
+ ++D E+ + D M ++G + + + + F +A+
Sbjct: 200 HTFDEGNHVVLDATRKEEQASEADVIIGMNNAGDVCYMSKFS-GSPVDAMVFVRKSAVAQ 258
Query: 225 DRIADLIKLQKDVISNEV 242
D++ ++ + + ++
Sbjct: 259 DKVKEINGIIDKALQADL 276
>gi|310798543|gb|EFQ33436.1| 3' exoribonuclease family protein [Glomerella graminicola M1.001]
Length = 383
Score = 62.2 bits (149), Expect = 6e-08, Method: Composition-based stats.
Identities = 15/82 (18%), Positives = 25/82 (30%), Gaps = 1/82 (1%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGD-THLLTTATLEEKVPMWIRNTKHGWI 59
+R GR+ NQ R ++ + GS V F D T + E + +
Sbjct: 27 IRPDGRKANQFRPLTAETGILPGTNGSARVCFSDGTEAIVGVKAEIEKTRVPPGAETDGE 86
Query: 60 TAEYGMLPRSTGNRVKREAVSG 81
E R + +
Sbjct: 87 ATEKRTEGGDGETRGNNDWLEM 108
>gi|308502001|ref|XP_003113185.1| CRE-EXOS-9 protein [Caenorhabditis remanei]
gi|308265486|gb|EFP09439.1| CRE-EXOS-9 protein [Caenorhabditis remanei]
Length = 432
Score = 62.2 bits (149), Expect = 6e-08, Method: Composition-based stats.
Identities = 35/257 (13%), Positives = 74/257 (28%), Gaps = 24/257 (9%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R R + R++ L G+ + G+T ++ + + P +R G I
Sbjct: 23 RFDFRSLEEFRDVKLVVG---SEVGTAICTIGNTKVMAAVSAQIAEPSSMRP-NKGVINI 78
Query: 62 EYGMLPRST----GNRVKRE-AVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
+ + P + +R+ + R R I + S + ++ +D
Sbjct: 79 DVDLSPMANVANEHDRLGSKGMELIRLLELIIRDSRCIDVESLCIRAGSEI--WKVRVDV 136
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHME----------DCSNKFQLSQVLKGHVAAISC 166
++ DG A A AL + K + + +
Sbjct: 137 RILDEDGSLLDCACLAAITALQHFKRPNVSLEAHHTLIYSEYEKAPVPLNIYHMPICTTI 196
Query: 167 G--MLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAK 224
G ++D E + +D + + S + + LA
Sbjct: 197 GLLDKGQMVVIDPTEKEAACLDGSIVVACNKRREVCALHQS-TNLVLTTKQIERCVKLAM 255
Query: 225 DRIADLIKLQKDVISNE 241
R L + +I +
Sbjct: 256 ARAEALTAVVSSIIKED 272
>gi|258576013|ref|XP_002542188.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
gi|237902454|gb|EEP76855.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
Length = 270
Score = 62.2 bits (149), Expect = 6e-08, Method: Composition-based stats.
Identities = 30/242 (12%), Positives = 71/242 (29%), Gaps = 7/242 (2%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWI--RNTKHGW 58
+RL GR+ N++R I + + GS + G+T ++ + +
Sbjct: 14 LRLDGRRWNELRLIDAQISTNPASSGSSYLATGNTVVVCNVHGPAEGKRSETTGGSGGAV 73
Query: 59 ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDV 118
++ + + +R K+ ++ GG I + +A + + D
Sbjct: 74 VSVVVNIAGFAGIDRRKKSMMASGGGGSDSTISIHVSVLSSDGSIFAACVNACTLALVDA 133
Query: 119 IQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLD 178
G A G + S++ + +S P + +
Sbjct: 134 GIPMPGLLCACTVGMSGRASTPAAELAQSSSRVGGINESLDPLLDMSHPEEMELPHMTVA 193
Query: 179 YGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
+A+ IV ++ + M + D + ++ V+
Sbjct: 194 NTNPVGGGSEADAEEAQMLSIVRMES-----GVHISYLETMFAVGIDGCKQMRQILNGVL 248
Query: 239 SN 240
Sbjct: 249 KR 250
>gi|294893125|ref|XP_002774343.1| Exosome complex exonuclease RRP46, putative [Perkinsus marinus ATCC
50983]
gi|239879681|gb|EER06159.1| Exosome complex exonuclease RRP46, putative [Perkinsus marinus ATCC
50983]
Length = 258
Score = 62.2 bits (149), Expect = 6e-08, Method: Composition-based stats.
Identities = 30/240 (12%), Positives = 71/240 (29%), Gaps = 20/240 (8%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R+ GR+ + MR +L + +GS + FGDT +L + + + G+
Sbjct: 26 RIDGRECSMMRPPTLELGLLPQKDGSARLGFGDTEVLVGVNGPVENRFPLGVSTPGY--- 82
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
P R + ++ + + + +++D L + V
Sbjct: 83 -----PLDVTVRRASGM----PTAEDKSVEYQLTKFINTIIDTHLLPGNTM---VTVAVE 130
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
+ ++ + A L D + + + E
Sbjct: 131 VMNNDGSLLSTIFNAAILALL---DAGSIPLRGTAFAAALGKRYHRGGTQILVDPDQSEE 187
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFF-AMLN-LAKDRIADLIKLQKDVIS 239
+S++ D + S +V + ++ L A + K + ++
Sbjct: 188 ESSVFTDTFVIDIHSQDVVMLVRDVAVGAAAEKEVEADALAPTAVAAVKAFEKYVRSCLA 247
>gi|116207378|ref|XP_001229498.1| hypothetical protein CHGG_02982 [Chaetomium globosum CBS 148.51]
gi|88183579|gb|EAQ91047.1| hypothetical protein CHGG_02982 [Chaetomium globosum CBS 148.51]
Length = 268
Score = 62.2 bits (149), Expect = 6e-08, Method: Composition-based stats.
Identities = 40/223 (17%), Positives = 67/223 (30%), Gaps = 30/223 (13%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+RL GRQ +Q R + LT G V G T +L AT E VP ++ G T
Sbjct: 23 LRLDGRQLDQYRPLELTFGDQ---YGVADVTLGKTRVLAKATAEVTVP-YVDRPLDGIFT 78
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSV--------VDLSALGSRQI 112
+ P ++ R + R++ + +R ++ +
Sbjct: 79 IATELSPMTSPAF-----EVNRPTETEVLLSRLLEKTVRRSGALDTESLCLVAGQKCWSV 133
Query: 113 IIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNK-------------FQLSQVLKG 159
+D V+ DGG AA AL +
Sbjct: 134 RVDVHVVSHDGGLTDAACVAVVAALRHFRKPDTSMEAGRLTVYTPAEREPVPLSWLHSPL 193
Query: 160 HVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEV 202
V G ++D + E+ + G I ++
Sbjct: 194 CVTWSFFGDDGETAVLDATWLEEQVRVASCTVSLNKHGEICQI 236
>gi|167518071|ref|XP_001743376.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163778475|gb|EDQ92090.1| predicted protein [Monosiga brevicollis MX1]
Length = 330
Score = 62.2 bits (149), Expect = 6e-08, Method: Composition-based stats.
Identities = 38/256 (14%), Positives = 76/256 (29%), Gaps = 25/256 (9%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
RL GR ++ RE T G + G T ++ T E V G+
Sbjct: 28 RLDGRHRHEHRECKFTFH---QTPGFVELALGKTRVMAQLTCEV-VAPHPDYDSEGFFRF 83
Query: 62 EYGMLPRSTGNRVKREAVSG------RQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115
+ + + + S R R+ + R I +V + ++ +
Sbjct: 84 NVSIAAGAGIAYAAQRSSSEEIVELTRLLERAFKEARAIDSESLCIVKGEKVWEVRVDVT 143
Query: 116 CDVIQADGGTRTAAITGA--------WVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCG 167
+ A +V+L + +S + A++
Sbjct: 144 VLENGGNMADGVCLAALAGILTFRRPYVSLTGGQVKIHSLEEHEPVSLSVHHRPIAVTIA 203
Query: 168 MLC--GYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKD 225
+ + +VD E++ + + G I + S + +L LAK
Sbjct: 204 SIAGGRHLLVDPTSLEEAVAEGCITVCLNGHGEICSINSGG-GTPLSPEQMKELLQLAKR 262
Query: 226 RIA----DLIKLQKDV 237
+ A L + +D
Sbjct: 263 KHAVFNHTLEQAMRDA 278
>gi|156841697|ref|XP_001644220.1| hypothetical protein Kpol_1051p10 [Vanderwaltozyma polyspora DSM
70294]
gi|156114858|gb|EDO16362.1| hypothetical protein Kpol_1051p10 [Vanderwaltozyma polyspora DSM
70294]
Length = 305
Score = 62.2 bits (149), Expect = 6e-08, Method: Composition-based stats.
Identities = 26/211 (12%), Positives = 60/211 (28%), Gaps = 5/211 (2%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
RL GR+ +Q R++ + G V G+T + + P + G
Sbjct: 24 RLDGREFDQFRDVEIDFG---KEFGDATVTMGNTKVQCRVSCSIAQP-YEDRPFEGLFFI 79
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
P + + ++ I++ + R+ ++ + +
Sbjct: 80 STESSPMAGPQFENGNNTGEDEVLCARIIEKAVRRSGALDIEGLCIVAGSKCWAIRADVH 139
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISC-GMLCGYPIVDLDYG 180
I + +A+ L H QV V + + + + +
Sbjct: 140 FLNCDGGFIDASCIAVMAALMHFRKPDISVFGEQVTVHPVDEREPVPLGILHIPICVTFS 199
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATF 211
+ D + N + I + S +
Sbjct: 200 FFNPEDTEENIKGESNSEITIIDASLKEELL 230
>gi|170067650|ref|XP_001868566.1| exosome complex exonuclease RRP46 [Culex quinquefasciatus]
gi|167863769|gb|EDS27152.1| exosome complex exonuclease RRP46 [Culex quinquefasciatus]
Length = 217
Score = 62.2 bits (149), Expect = 7e-08, Method: Composition-based stats.
Identities = 27/233 (11%), Positives = 63/233 (27%), Gaps = 27/233 (11%)
Query: 9 NQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPR 68
+ +R + + ++GS ++ G+T + + +V +
Sbjct: 8 DSLRPMFCELNILTRSDGSAMLTQGETAVTASVNGPVEVKLQ---------HMNVEKSYV 58
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
R + S I+ AL + + + I +Q GG
Sbjct: 59 EIHFRPRSGMGSVNDRLLENLIRNTYESALLTAL----HPRTAVSIQIQEMQDRGGLVAC 114
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
AI +AL D M+ + VL +
Sbjct: 115 AINAVCLALIDSGIEMKYLV--AAVHSVLDEEGGITLDPDELRAKDARARFTFVFENTSR 172
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
+ G F+ + + L ++ D + + + +++ +
Sbjct: 173 NTVSIYTHGK------------FTSEQYHRALRMSTDAVGRVFDFYRTIVAKQ 213
>gi|294889655|ref|XP_002772906.1| Exosome complex exonuclease RRP46, putative [Perkinsus marinus ATCC
50983]
gi|239877486|gb|EER04722.1| Exosome complex exonuclease RRP46, putative [Perkinsus marinus ATCC
50983]
Length = 258
Score = 61.8 bits (148), Expect = 7e-08, Method: Composition-based stats.
Identities = 30/240 (12%), Positives = 71/240 (29%), Gaps = 20/240 (8%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R+ GR+ + MR +L + +GS + FGDT +L + + + G+
Sbjct: 26 RIDGRECSMMRPPTLELGLLPQKDGSARLGFGDTEVLVGVNGPVENRFPLGVSTPGY--- 82
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
P R + ++ + + + +++D L + V
Sbjct: 83 -----PLDVTVRRASGM----PTAEDKSVEYQLTKFINTIIDAHLLPGNTM---VTVAVE 130
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
+ ++ + A L D + + + E
Sbjct: 131 VMNNDGSLLSTIFNAAILALL---DAGSIPLRGTAFAAALGKRYHRGGTQILVDPDQSEE 187
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFF-AMLN-LAKDRIADLIKLQKDVIS 239
+S++ D + S +V + ++ L A + K + ++
Sbjct: 188 ESSVFTDTFVIDIHSQDVVMLVRDVAVGAAAEKEVEADALAPTAVAAVKAFEKYVRSCLA 247
>gi|71001078|ref|XP_755220.1| exosome complex endonuclease 2/ribosomal RNA processing protein
[Aspergillus fumigatus Af293]
gi|66852858|gb|EAL93182.1| exosome complex endonuclease 2/ribosomal RNA processing protein,
putative [Aspergillus fumigatus Af293]
gi|159129307|gb|EDP54421.1| exosome complex endonuclease 2/ribosomal RNA processing protein,
putative [Aspergillus fumigatus A1163]
Length = 292
Score = 61.8 bits (148), Expect = 8e-08, Method: Composition-based stats.
Identities = 41/252 (16%), Positives = 75/252 (29%), Gaps = 18/252 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+RL GR +Q+R +++T G V+ G T L+ + E P R +
Sbjct: 23 VRLDGRHADQLRPLTVTFG---EEYGHVKVQLGKTGLIVRISSEVTKPRDDRPFDGIFTI 79
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQI--IIDCDV 118
A S R+ + AL + G D V
Sbjct: 80 ALELTAMGSPAWDNGRQGDLEAYVAHVLDRLVRHSNALDTESLCILKGVSCWSIRADVHV 139
Query: 119 IQADGGTRTAAITGAWVALHDCLQHMEDCSNK------------FQLSQVLKGHVAAISC 166
DG AA G L + + L+ K
Sbjct: 140 TDYDGNLVDAACIGVMAGLQHFRRPDAVVKDGQVIVYGLDERVPVPLNITHKPLSVTFHT 199
Query: 167 GMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226
I+D E+ + D F M ++G + V + + F + ++A ++
Sbjct: 200 FDEGKRVILDATRKEEQASEADVVFGMNNAGDVCFVSKFS-GSPVDALVFVSKSSVALEK 258
Query: 227 IADLIKLQKDVI 238
+ ++ + +
Sbjct: 259 VKEINAIIDKAL 270
>gi|66356472|ref|XP_625414.1| archeo-eukaryotic exosomal RNAse [Cryptosporidium parvum Iowa II]
gi|46226443|gb|EAK87443.1| archeo-eukaryotic exosomal RNAse [Cryptosporidium parvum Iowa II]
Length = 351
Score = 61.8 bits (148), Expect = 8e-08, Method: Composition-based stats.
Identities = 46/248 (18%), Positives = 86/248 (34%), Gaps = 14/248 (5%)
Query: 1 MRLSGRQENQMREISLTRRVSKY---AEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHG 57
+R GR+ ++R I +G+ + G L+ + + I T +
Sbjct: 98 IRQDGRKLTEIRRIKCIINEGNQRGIEDGNVYFEQGQNKLIVSIVGPVPISGNINYTNNN 157
Query: 58 ---WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIII 114
I + + P S+ +R K G+ E +I R SV+ QIII
Sbjct: 158 SGVQINCNFRVSPFSSQDRRK----RGKNDRFCIESGLIISRTFSSVICDQYS-KSQIII 212
Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC--GY 172
+ +++ DG R+AAI +AL M+D K + ++ +
Sbjct: 213 NIIILEGDGSVRSAAINATSIALAISGISMKDLIVSATCGLYGKQVLYDLTQSEMESLKG 272
Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
++ + D+ ID D V + I V + ++N
Sbjct: 273 TLLMAIHSTDNDIDTDTENVGNGNSDISPVTIDLNTK-LKPEMIEFLMNETFSACKQFSV 331
Query: 233 LQKDVISN 240
+ +D + N
Sbjct: 332 IIRDFLKN 339
>gi|67473385|ref|XP_652459.1| 3' exoribonuclease family protein [Entamoeba histolytica HM-1:IMSS]
gi|67478768|ref|XP_654766.1| 3' exoribonuclease family protein [Entamoeba histolytica HM-1:IMSS]
gi|56469313|gb|EAL47073.1| 3' exoribonuclease family protein [Entamoeba histolytica HM-1:IMSS]
gi|56471839|gb|EAL49380.1| 3' exoribonuclease family protein [Entamoeba histolytica HM-1:IMSS]
Length = 227
Score = 61.8 bits (148), Expect = 8e-08, Method: Composition-based stats.
Identities = 35/240 (14%), Positives = 84/240 (35%), Gaps = 26/240 (10%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R GR+ N++R ++ V A+GSCL++ ++ ++++ +
Sbjct: 7 RGDGREANEIRATTIKIGVISGAKGSCLIQKENSKVISSV-------------QIKTQDE 53
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
+ + E+Q ++ ++L S ++ + + I + V++
Sbjct: 54 SIDFEFTVKVTFAQFGNNDLLNKRKEVELQEILTQSLVSRINQESNKGKIICLQVFVMEQ 113
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
DG + I + +AL D M+ + V+K + + E
Sbjct: 114 DGSVEDSIINSSSLALFDSEIQMDS---IIIATTVVKLPI-------YNQVIVDPTALEE 163
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
+ + + I ++ S + L++A D L K + +I ++
Sbjct: 164 EKKEGSVLIACIPSNSSITQIYMSG---VLDPQDISSCLSIALDSCWKLNKEIELIIQSK 220
>gi|195443592|ref|XP_002069486.1| GK11547 [Drosophila willistoni]
gi|194165571|gb|EDW80472.1| GK11547 [Drosophila willistoni]
Length = 237
Score = 61.8 bits (148), Expect = 8e-08, Method: Composition-based stats.
Identities = 34/235 (14%), Positives = 74/235 (31%), Gaps = 31/235 (13%)
Query: 8 ENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLP 67
+++RE+ +GS + G T ++ +V + ++ Y
Sbjct: 13 NDKLREMRCEFNPLSRCDGSVMYSQGSTVVIAAVLGPVEVKTQSLSIDGSYLECNYRPKA 72
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
+ + R+ +I L V + ++ + ++ G
Sbjct: 73 G-----LPQVKERIRES--------VIQDVLELAVLGESYPRSKMSVQIQELEDRGSIDA 119
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG-YPIVDLDYGEDSTID 186
A+ A +A+ +K AA+ C + I+D D E
Sbjct: 120 CAVNAACLAM-------------IIGGLPMKYSFAAVQCIINEDGEYILDPDQRETLHQR 166
Query: 187 VDANFVMTD-SGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
F G ++ VQ + +F F + L + A++ + +D I+
Sbjct: 167 ASFTFAFDSLEGDLLLVQ---TKGSFKIAQFNDIECLCRSASANIFQFYRDNIAK 218
>gi|311257022|ref|XP_003126922.1| PREDICTED: exosome complex exonuclease MTR3-like [Sus scrofa]
Length = 254
Score = 61.8 bits (148), Expect = 9e-08, Method: Composition-based stats.
Identities = 38/245 (15%), Positives = 72/245 (29%), Gaps = 46/245 (18%)
Query: 6 RQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK---------- 55
R ++R + + A+GS ++ G T +L + + R
Sbjct: 31 RDPTRLRPVYARAGLLSQAKGSAYLEAGGTKVLCAVSGPRQAEGGERGGGPAGTGGEAPA 90
Query: 56 --HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQII 113
G + ++ P S R GG +E+ + AL V L Q+
Sbjct: 91 ALRGRLLCDFRRAPFSGRRRRAPPG-----GGEERELALALQEALEPAVRLGRYPRAQLE 145
Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP 173
+ +++ G AA+T A +AL D M D
Sbjct: 146 VSALLLEDGGSALAAALTAAALALADAGIEMYDLVVG----------------------- 182
Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
E+ +M + + GS E + + + L + L +
Sbjct: 183 ----CGXEERAAASLTVALMPVLNQVAGLLGSGEGGP--TESWAEAVRLGLEGCQRLYPV 236
Query: 234 QKDVI 238
+ +
Sbjct: 237 LQQCL 241
>gi|328784959|ref|XP_624485.2| PREDICTED: exosome complex exonuclease RRP46 [Apis mellifera]
Length = 229
Score = 61.8 bits (148), Expect = 9e-08, Method: Composition-based stats.
Identities = 26/230 (11%), Positives = 63/230 (27%), Gaps = 26/230 (11%)
Query: 11 MREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRST 70
+R ++ +GS ++ G+T + + + I Y +
Sbjct: 21 LRPMNCELNQLSMPDGSAMLMQGNTAAVAGIYGPIEAKLQKMIYDKASIEVSYIPVKGPA 80
Query: 71 GNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAI 130
+ + I + + ++ + I I+ ++ GG I
Sbjct: 81 KIDDRM-------------TEMYIKETCEAAIIVTFHPATAICINIQEMEDSGGMLACTI 127
Query: 131 TGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDAN 190
A +AL + M+ I G D +D+ +
Sbjct: 128 NAACLALINAGIPMKFTIAAVN---------CMIQEGTNNIILDPDSTQLQDAKAEFTYA 178
Query: 191 FVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
F I F+++ F ++ K + ++++
Sbjct: 179 FDSVKKDIIC----CYTAGCFTEEEFLETIDKCKQASQYVFDFYRNLVKK 224
>gi|327303590|ref|XP_003236487.1| 3' exoribonuclease [Trichophyton rubrum CBS 118892]
gi|326461829|gb|EGD87282.1| 3' exoribonuclease [Trichophyton rubrum CBS 118892]
Length = 379
Score = 61.8 bits (148), Expect = 9e-08, Method: Composition-based stats.
Identities = 12/47 (25%), Positives = 19/47 (40%), Gaps = 1/47 (2%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGD-THLLTTATLEEK 46
+R GR Q R ++ + A GS + F D T + E +
Sbjct: 34 IRPDGRSATQFRPLTAETNIVPNANGSARIGFADGTQAIVGVKAEVE 80
>gi|315050750|ref|XP_003174749.1| hypothetical protein MGYG_02279 [Arthroderma gypseum CBS 118893]
gi|311340064|gb|EFQ99266.1| hypothetical protein MGYG_02279 [Arthroderma gypseum CBS 118893]
Length = 379
Score = 61.8 bits (148), Expect = 9e-08, Method: Composition-based stats.
Identities = 12/47 (25%), Positives = 19/47 (40%), Gaps = 1/47 (2%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGD-THLLTTATLEEK 46
+R GR Q R ++ + A GS + F D T + E +
Sbjct: 34 IRPDGRSATQFRPLTAETNIVPNANGSARIGFADGTQAIVGVKAEVE 80
>gi|302654581|ref|XP_003019094.1| hypothetical protein TRV_06873 [Trichophyton verrucosum HKI 0517]
gi|291182792|gb|EFE38449.1| hypothetical protein TRV_06873 [Trichophyton verrucosum HKI 0517]
Length = 381
Score = 61.8 bits (148), Expect = 9e-08, Method: Composition-based stats.
Identities = 12/47 (25%), Positives = 19/47 (40%), Gaps = 1/47 (2%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGD-THLLTTATLEEK 46
+R GR Q R ++ + A GS + F D T + E +
Sbjct: 34 IRPDGRSATQFRPLTAETNIVPNANGSARIGFADGTQAIVGVKAEVE 80
>gi|302509154|ref|XP_003016537.1| hypothetical protein ARB_04826 [Arthroderma benhamiae CBS 112371]
gi|291180107|gb|EFE35892.1| hypothetical protein ARB_04826 [Arthroderma benhamiae CBS 112371]
Length = 379
Score = 61.8 bits (148), Expect = 9e-08, Method: Composition-based stats.
Identities = 12/47 (25%), Positives = 19/47 (40%), Gaps = 1/47 (2%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGD-THLLTTATLEEK 46
+R GR Q R ++ + A GS + F D T + E +
Sbjct: 34 IRPDGRSATQFRPLTAETNIVPNANGSARIGFADGTQAIVGVKAEVE 80
>gi|225713980|gb|ACO12836.1| Exosome complex exonuclease RRP45 [Lepeophtheirus salmonis]
Length = 363
Score = 61.8 bits (148), Expect = 9e-08, Method: Composition-based stats.
Identities = 32/248 (12%), Positives = 73/248 (29%), Gaps = 18/248 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
RL GR+ ++ R++++ G+ VK G+T +L + + P R +
Sbjct: 20 RLDGRKLDERRDLTIHFG---REWGTTEVKLGETRVLASTSCSVGEPQSSRPNEGVLKIR 76
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
+ RS R R + + + + S+ S I ++ ++
Sbjct: 77 MEPLAKRSMTTEA--LVELNRVIERVLKQSKCLD--MESLCISSEEKVWIISLEMTILND 132
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVL----------KGHVAAISCGMLCG 171
G A AL + H + +
Sbjct: 133 AGNAADCASVAGLAALCHFKRPDVTLKGDKIRIHPFYERDPVSLAVHHHPVLSTFALYGR 192
Query: 172 YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231
+ D E+ +D M I + + + + + + A + +++
Sbjct: 193 VALSDPSRDEEVVMDGKVVLGMNPYREICALHLAGQ-KLVDKRLVLQLASKAAEYAKNIV 251
Query: 232 KLQKDVIS 239
K+ +
Sbjct: 252 NKLKNELK 259
>gi|167519907|ref|XP_001744293.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163777379|gb|EDQ90996.1| predicted protein [Monosiga brevicollis MX1]
Length = 214
Score = 61.8 bits (148), Expect = 9e-08, Method: Composition-based stats.
Identities = 24/141 (17%), Positives = 54/141 (38%), Gaps = 5/141 (3%)
Query: 6 RQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGM 65
R+ + R ++L V A GSC ++ G T ++ E+ + G +
Sbjct: 15 REAGEPRSLALQTGVVSRAAGSCFLEMGRTKVMVACYGPEEAARAGTFSDMGVLECHITR 74
Query: 66 LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125
P + R + ++ + ++R + ++ + L I + +++ DGG
Sbjct: 75 APFAEQKR-----ATLQETDADRGLRRDLDAMIKPAILLEKYPKSTIALQATILEDDGGV 129
Query: 126 RTAAITGAWVALHDCLQHMED 146
A + + AL + + D
Sbjct: 130 LPALVMASSTALVEAGIELRD 150
>gi|316972750|gb|EFV56404.1| 3' exoribonuclease family, domain 1 [Trichinella spiralis]
Length = 309
Score = 61.8 bits (148), Expect = 9e-08, Method: Composition-based stats.
Identities = 34/261 (13%), Positives = 81/261 (31%), Gaps = 21/261 (8%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+R GR ++ R + + V + A GS LV+ G+ + + L+ P+ +
Sbjct: 22 IREDGRSRDRFRPVLIRTNVIESANGSALVQIGEMSVTASVWLDFGTPLETAPDQGMIEF 81
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGS--RQIIIDCDV 118
+ + + R + A G + +D +
Sbjct: 82 KSRFFISEESDEETSNDVKEAENISRIFKQAYYSQSAFDRKQLCLVTGRLCWNLKVDLLI 141
Query: 119 IQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLS--------------QVLKGHVAAI 164
+ G A +ALH+ + + S + + +
Sbjct: 142 MGKGGNLFDVASIAVKMALHNTIIPQVEASCPKNDTRTINIENDINKGFSLNISNVPMLV 201
Query: 165 SCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSG----HIVEVQGSAERATFSQDHFFAML 220
+ G+ I+D++ E + ++ + + GS +R F ++
Sbjct: 202 TIGIYGTMHIIDMNQKESECMHKIMVIGISGDELEYARVTYI-GSLKRGALMNSSFLKVI 260
Query: 221 NLAKDRIADLIKLQKDVISNE 241
A A + ++ + V + +
Sbjct: 261 ATAVHTGAHINRIIESVRAEK 281
>gi|50307491|ref|XP_453725.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|49642859|emb|CAH00821.1| KLLA0D14993p [Kluyveromyces lactis]
Length = 225
Score = 61.8 bits (148), Expect = 9e-08, Method: Composition-based stats.
Identities = 30/229 (13%), Positives = 62/229 (27%), Gaps = 18/229 (7%)
Query: 17 TRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGNRVKR 76
T V + +GS +V T ++ + + + + R K
Sbjct: 4 TTHVLGHVDGSSVVSNSGTKVICSVSGPMEPKSRQELPTQLALEIIVKPAEGVQSTREKL 63
Query: 77 EAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVA 136
R++ + V L RQ + C + G +R + V
Sbjct: 64 MEDQI--------------RSVLTPVLARYLHPRQFVQICLQVLEAGESRDYTVKEVSVC 109
Query: 137 LHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDS 196
++ + + D L P +S ++
Sbjct: 110 VNAAVLALVDAGVPLLSMCSGTCIGITTEGKQLVVNPTESQLAKCESVHVYCLELGTNEN 169
Query: 197 GHI---VEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNEV 242
G I + + +F + F +L + L + VI ++V
Sbjct: 170 GDIDVRNLLLLDS-LGSFDESQLFKVLETGEKECIRLYTELRSVIKDKV 217
>gi|224090167|ref|XP_002308947.1| predicted protein [Populus trichocarpa]
gi|222854923|gb|EEE92470.1| predicted protein [Populus trichocarpa]
Length = 318
Score = 61.4 bits (147), Expect = 1e-07, Method: Composition-based stats.
Identities = 40/279 (14%), Positives = 76/279 (27%), Gaps = 41/279 (14%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+R R + R+ +L A GS L K G T +L +E P + + G I
Sbjct: 36 IRPDARPLGRARDTTLALGAVASAHGSALAKIGSTTMLAAIKMEVMTPST-ESPEEGSIA 94
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSA-------------- 106
++ M P + Q + + +++L
Sbjct: 95 IDFHMPPICSPIVRPGRPAEAAPVISKQLSDTISRQVNSGMINLKELSLVSGKAAWMAYL 154
Query: 107 --------------------------LGSRQIIIDCDVIQADGGTRTAAITGAWVALHDC 140
+ C V D
Sbjct: 155 DIYCLDADGALFDAALLSAVGAFSHSAFIYYRSLICAVQIPIVSLNDDGKIVLVSEEDDG 214
Query: 141 LQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIV 200
+ E+ NK + L +++C + Y + D E+S ++ V+ S +V
Sbjct: 215 TKLEEEPVNKEKRKLTLSSIPFSLTCILHKNYILADPTAEEESIMETLVTVVLDSSSRLV 274
Query: 201 EVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
+ L + R+ +L + + IS
Sbjct: 275 SFYKPGGPVLAQTSAVQDCVALTRQRVKELQDILDETIS 313
>gi|221058609|ref|XP_002259950.1| exoribonuclease PH [Plasmodium knowlesi strain H]
gi|193810023|emb|CAQ41217.1| exoribonuclease PH, putative [Plasmodium knowlesi strain H]
Length = 281
Score = 61.4 bits (147), Expect = 1e-07, Method: Composition-based stats.
Identities = 40/263 (15%), Positives = 80/263 (30%), Gaps = 31/263 (11%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+R+ GR + R I + + + A+GS V + +++ L P + G I
Sbjct: 15 IRVDGRTLSTYRTIEINKNILVSADGSSSVMNEENNVICGIKLSLLTP-SLDAPDEGVIN 73
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEI-QRMIGRALRSVVDLSALGSRQIIIDCDVI 119
+ NR+K++ + + I R ++ + I V+
Sbjct: 74 LQIDCPASVAANRIKKDHLQIMSSIIYDLCLKNNIDRKKLCILPSK--FVWGVDISVMVL 131
Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKF----------------------QLSQVL 157
A GG +VAL D + + K +
Sbjct: 132 NAGGGLLDIISMAIYVALKDTVVPVVKPKRKIDESNTFHHTKCADYQIEIVENQKTDFPY 191
Query: 158 KGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDH-- 215
+ +S G + + D+ E+ ++ +T SG V + S +
Sbjct: 192 ENVPICVSIGEINNKYVYDMSKVEEELVENIFVVAVTSSGKCVAFH---KLYGISMEIAS 248
Query: 216 FFAMLNLAKDRIADLIKLQKDVI 238
M + L + + I
Sbjct: 249 ILNMTENSSKISHHLFEKINEAI 271
>gi|32566065|ref|NP_508024.2| EXOSome (multiexonuclease complex) component family member (exos-7)
[Caenorhabditis elegans]
gi|24817316|emb|CAB07377.2| C. elegans protein F31D4.1, confirmed by transcript evidence
[Caenorhabditis elegans]
gi|24817547|emb|CAB07412.2| C. elegans protein F31D4.1, confirmed by transcript evidence
[Caenorhabditis elegans]
Length = 312
Score = 61.4 bits (147), Expect = 1e-07, Method: Composition-based stats.
Identities = 41/282 (14%), Positives = 68/282 (24%), Gaps = 42/282 (14%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTH-LLTTATLE-EKVPMWIRNTKHGW 58
+R GR R+I L R V GSC V+ G T +L LE E
Sbjct: 21 IRNDGRSCQDFRQIILERGVLSGTNGSCRVQLGQTTDVLAGIKLELESYDAETEKEPKQP 80
Query: 59 ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSV-------VDLSALGSRQ 111
I ++ + + S Q +AL + +
Sbjct: 81 INFNVDFSANASSQFAGKGGDEYAE-ELSAAFQAAYSKALDIMPNLAKTQLADGYRWKIN 139
Query: 112 IIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAA-------I 164
+ I + ++ + + + ++ VLK A +
Sbjct: 140 VDISVLQWDGSVSDAISIAIIGALSDLEFPEGDVAPDDGGKVRIVLKRPKVAGNVRDENV 199
Query: 165 SCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIV----------EVQGSAE------- 207
M + S I T + S+E
Sbjct: 200 QVAMWKLDVMRCPLLLTISKIGTANLVDCTPEEECCIRSQLLVGLAAIADSSENNEPNYD 259
Query: 208 --------RATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
+ ML LA + L + NE
Sbjct: 260 VTCVKQVGGGLLEMESIQEMLELAAKSVGGLYGALAKRLKNE 301
>gi|156093968|ref|XP_001613022.1| hypothetical protein [Plasmodium vivax SaI-1]
gi|148801896|gb|EDL43295.1| hypothetical protein, conserved [Plasmodium vivax]
Length = 271
Score = 61.4 bits (147), Expect = 1e-07, Method: Composition-based stats.
Identities = 39/239 (16%), Positives = 82/239 (34%), Gaps = 10/239 (4%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R++ R+ N++R++ + Y++ SC G+T +L + A
Sbjct: 32 RINNRKNNEIRDMFIKLGSDGYSDASCFYSLGNTKILALIYGPK----------PDSKNA 81
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
Y R G + I+ ++ + SV+ L I I C +IQ
Sbjct: 82 TYDKGKVFLEIRSLNMNDDGANDESDENIKNLLIECVSSVILLDQYPQCSINIKCLIIQN 141
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
DGG +A +T +AL + M D ++ ++ + + + + +
Sbjct: 142 DGGCLSATLTCISLALTNAQIKMRDIIVSVNVNSIICPNTKRVFHLVDVDSLVNTEEKYY 201
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
D ++ + +F+ +++ A+ L K V+ N
Sbjct: 202 GGKYDTNSITLGICLNLRTVCFFHGSGNSFNSKTLSEIISYAECACRSLGCEIKTVLKN 260
>gi|321250323|ref|XP_003191768.1| ribosomal RNA-processing protein 43 [Cryptococcus gattii WM276]
gi|317458235|gb|ADV19981.1| Ribosomal RNA-processing protein 43, putative [Cryptococcus gattii
WM276]
Length = 303
Score = 61.4 bits (147), Expect = 1e-07, Method: Composition-based stats.
Identities = 18/106 (16%), Positives = 32/106 (30%), Gaps = 17/106 (16%)
Query: 2 RLSGR---------------QENQM-REISLTRRVSKYAEGSCLVKFGDTHLLTTATLEE 45
R GR + + R++S+ A GS LV+ GDT ++ E
Sbjct: 47 RPDGRPILSSSSSQPTASASAADDIWRQVSINTGSISTAHGSALVRMGDTTMVCGVKAEI 106
Query: 46 KVPMWIRNTKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQ 91
P G++ + S+ Q + +
Sbjct: 107 GEPDT-ETPGEGFVVPNIDLPALSSPRFKPGPPGDEAQTYSNWLNE 151
>gi|119625656|gb|EAX05251.1| exosome component 9, isoform CRA_e [Homo sapiens]
Length = 242
Score = 61.4 bits (147), Expect = 1e-07, Method: Composition-based stats.
Identities = 40/224 (17%), Positives = 65/224 (29%), Gaps = 23/224 (10%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
RL GRQ R I ++ G C+V+ G T +L + E V + G +
Sbjct: 23 RLDGRQTYDYRNIRISFGTD---YGCCIVELGKTRVLGQVSCEL-VSPKLNRATEGILFF 78
Query: 62 EYGMLPRSTGNRVKREAVS-----GRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
+ + R R + I VV + QI +D
Sbjct: 79 NLELSQMAAPAFEPGRQSDLLVKLNRLMERCLRNSKCIDTESLCVVAGEKV--WQIRVDL 136
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMED----------CSNKFQLSQVLKGHVAAISC 166
++ DG AA A VAL + + + + +S
Sbjct: 137 HLLNHDGNIIDAASIAAIVALCHFRRPDVSVQGDEVTLYTPEERDPVPLSIHHMPICVSF 196
Query: 167 GMLCGYPIV--DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAER 208
+ D + E+ +D M I +Q S
Sbjct: 197 AFFQQGTYLLVDPNEREERVMDGLLVIAMNKHREICTIQSSGSE 240
>gi|316975514|gb|EFV58947.1| exosome complex exonuclease RRP45 [Trichinella spiralis]
Length = 448
Score = 61.4 bits (147), Expect = 1e-07, Method: Composition-based stats.
Identities = 39/255 (15%), Positives = 73/255 (28%), Gaps = 19/255 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R R+ + R + L A GSC+ +FG+T + + P + G +
Sbjct: 39 REDLRENEEFRPVRLCFG---RAFGSCVAEFGNTKVFVKTSCSVVTP-SLTRPSSGILKI 94
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGS--RQIIIDCDVI 119
P++ + + R E R + G QI D V+
Sbjct: 95 NLEFGPQAVAHYEVGRLEKCIEYQRLLERNIKDARCVCLDTLCIISGEKVWQIRCDVYVL 154
Query: 120 QADGGTRTAAITGAWVALHDCLQH----------MEDCSNKFQLSQVLKGHVAAISCGML 169
DG A AL + +K L + + I+ G
Sbjct: 155 NNDGSLVDCACVAILSALRHFRIPSVTRHGTDYTIHSFDDKEPLRLDIFHYPCMITLGYY 214
Query: 170 --CGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRI 227
I + E++ +D M + + + ++ R+
Sbjct: 215 SGKEIFICEPSLLEETVLDQCFILAMNAHFEFTLIH-HLKPQPYKDSLILRAKSIIHSRV 273
Query: 228 ADLIKLQKDVISNEV 242
L+ L I ++
Sbjct: 274 KQLVDLINREIEEDI 288
>gi|170109350|ref|XP_001885882.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164639153|gb|EDR03426.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 282
Score = 61.4 bits (147), Expect = 1e-07, Method: Composition-based stats.
Identities = 35/262 (13%), Positives = 69/262 (26%), Gaps = 31/262 (11%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+RL GR +MR ++T G G T +L + V G IT
Sbjct: 22 LRLDGRLSLEMRLPTITFGPD---FGWVECALGKTRVLAQVEA-KMVKPAPERPFQGTIT 77
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALG--------SRQI 112
+LP ++ GR I RM+ + L+ + I
Sbjct: 78 IHSEILPMASSE-----YEPGRPSDEEVTITRMLDKVLKRSDAVDKESLCILAGQRVWHI 132
Query: 113 IIDCDVIQADGGTRTAAITGAWVALHDCLQHMED-CSNKFQLSQVLKGHVAAISCGMLCG 171
+ + G A AL + + ++ + ++
Sbjct: 133 RLTLHFLADAGNMLDCACLAGITALQHFRRPDVEVVGDEVIVHSPWDRAPVPLAIHHTPF 192
Query: 172 YPIVDLDYGEDSTIDVDAN------------FVMTDSGHIVEVQGSAERATFSQDHFFAM 219
+ +D N + I +Q + +
Sbjct: 193 CFTFAFFPDITTPPVLDPNQLEQRLSAGFVSIALNAQKEICVLQKLG-GVPLETEEVLTL 251
Query: 220 LNLAKDRIADLIKLQKDVISNE 241
+N+A + +L + +
Sbjct: 252 VNVAVGKAKELHGFLDTQLRED 273
>gi|209877631|ref|XP_002140257.1| 3' exoribonuclease family protein [Cryptosporidium muris RN66]
gi|209555863|gb|EEA05908.1| 3' exoribonuclease family protein, putative [Cryptosporidium muris
RN66]
Length = 239
Score = 61.4 bits (147), Expect = 1e-07, Method: Composition-based stats.
Identities = 40/245 (16%), Positives = 75/245 (30%), Gaps = 24/245 (9%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+RL GRQ ++R I++ V GS G + A E+ N G
Sbjct: 3 IRLDGRQYLELRPINIRIGVFHGLSGSSDFSMGLSRATAVAWQPEET-----NNIRGKSY 57
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
+ + P S G + ++ R L ++D + + + VI
Sbjct: 58 LDVIIRPNSGST-----------GDTEKLLELYCTRVLEDIIDFKQIPRCIVSVAIQVIS 106
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
DG A +AL D M +++ + +S I
Sbjct: 107 QDGPIFPICFNAAVLALLDAGIPMTTTPLAISIAEACTYQLNDLS----KHIIIDPNGEE 162
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQ--DHFF-AMLNLAKDRIADLIKLQKDV 237
D I V + S I+ A+ + + +++A L ++
Sbjct: 163 IDKCISCSHYIVSSRSNQIIAC-LIAKGTGITYNDKIYDFDSISIAIAGTKVLCNYIRNY 221
Query: 238 ISNEV 242
+ +
Sbjct: 222 LQKTL 226
>gi|284794093|pdb|3KRN|A Chain A, Crystal Structure Of C. Elegans Cell-Death-Related
Nuclease 5(Crn-5)
gi|284794094|pdb|3KRN|B Chain B, Crystal Structure Of C. Elegans Cell-Death-Related
Nuclease 5(Crn-5)
Length = 222
Score = 61.4 bits (147), Expect = 1e-07, Method: Composition-based stats.
Identities = 40/238 (16%), Positives = 69/238 (28%), Gaps = 31/238 (13%)
Query: 5 GRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYG 64
GR +RE+ K A+GS G T + + + V + + + Y
Sbjct: 3 GR----LREMRCELSFLKNADGSACFSQGATCIWASCSGPGDVHASKASDEAMTLDISYR 58
Query: 65 MLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGG 124
+ + + +I L + ++L I + IQ DG
Sbjct: 59 ---------------ANCGDNKFNVLNNIIHSTLSNAINLELFPHTTISVTVHGIQDDGS 103
Query: 125 TRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDST 184
AI GA AL D E + +V + ST
Sbjct: 104 MGAVAINGACFALLDNGMPFETVFCGVLIVRVKDELI-----------IDPTAKQEAAST 152
Query: 185 IDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNEV 242
V + GH A + A +LA+ + + K V+ ++
Sbjct: 153 GRVLFSVCKGSDGHPEVCAMDA-IGHWDFIQLEAAWSLAQPSASAIFDFYKTVMKRKL 209
>gi|189206730|ref|XP_001939699.1| 3' exoribonuclease [Pyrenophora tritici-repentis Pt-1C-BFP]
gi|187975792|gb|EDU42418.1| 3' exoribonuclease [Pyrenophora tritici-repentis Pt-1C-BFP]
Length = 291
Score = 61.4 bits (147), Expect = 1e-07, Method: Composition-based stats.
Identities = 32/257 (12%), Positives = 75/257 (29%), Gaps = 23/257 (8%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+R+ R + R + LT G V+ G T ++ +++ P+ R G
Sbjct: 23 IRIDRRAFDAFRPLELTFG---DEYGVADVQLGKTRVIARISVDVTTPLPERKFD-GIFQ 78
Query: 61 AEYGMLPRSTGNRVKREAVS-----GRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115
P ++ R ++ + ++ S + D
Sbjct: 79 IVTEFSPMASPAFEVGRPTDAEVILSRILEKAIRRSNALDTESLCIIAGSKCF--ALRAD 136
Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQ-----------VLKGHVAAI 164
+I DGG A+ AL + + +L +
Sbjct: 137 VHIIDHDGGLIDASCIAVMAALQHFRRPDVVVEGEKATILSVRDREPIPLSILHQPLCVT 196
Query: 165 SCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAK 224
++D + E+ + M G + ++ AT + N+A
Sbjct: 197 FSYFEDEIFLIDANLAEEQVRQGEVILTMNKHGELCQIAKYG-GATINPLALLNCTNVAL 255
Query: 225 DRIADLIKLQKDVISNE 241
+++ ++ + + +
Sbjct: 256 EKVKEMSAFIQKRLEED 272
>gi|17531759|ref|NP_496284.1| Cell-death-Related Nuclease family member (crn-5) [Caenorhabditis
elegans]
gi|3874232|emb|CAA90109.1| C. elegans protein C14A4.5, confirmed by transcript evidence
[Caenorhabditis elegans]
gi|31747259|gb|AAP57301.1| cell death-related nuclease 5 [Caenorhabditis elegans]
Length = 214
Score = 61.4 bits (147), Expect = 1e-07, Method: Composition-based stats.
Identities = 40/238 (16%), Positives = 69/238 (28%), Gaps = 31/238 (13%)
Query: 5 GRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYG 64
GR +RE+ K A+GS G T + + + V + + + Y
Sbjct: 3 GR----LREMRCELSFLKNADGSACFSQGATCIWASCSGPGDVHASKASDEAMTLDISYR 58
Query: 65 MLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGG 124
+ + + +I L + ++L I + IQ DG
Sbjct: 59 ---------------ANCGDNKFNVLNNIIHSTLSNAINLELFPHTTISVTVHGIQDDGS 103
Query: 125 TRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDST 184
AI GA AL D E + +V + ST
Sbjct: 104 MGAVAINGACFALLDNGMPFETVFCGVLIVRVKDELI-----------IDPTAKQEAAST 152
Query: 185 IDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNEV 242
V + GH A + A +LA+ + + K V+ ++
Sbjct: 153 GRVLFSVCKGSDGHPEVCAMDA-IGHWDFIQLEAAWSLAQPSASAIFDFYKTVMKRKL 209
>gi|268562221|ref|XP_002638538.1| C. briggsae CBR-EXOS-7 protein [Caenorhabditis briggsae]
Length = 300
Score = 61.4 bits (147), Expect = 1e-07, Method: Composition-based stats.
Identities = 34/271 (12%), Positives = 66/271 (24%), Gaps = 32/271 (11%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTH-LLTTATLE-EKVPMWIRNTKHGW 58
+R GR R I L R V GSC V+ G T +L LE E
Sbjct: 21 IRNDGRTCADFRTIVLERGVLSGTNGSCRVQLGQTTDVLAGIKLELESFDPAAEKEAKQP 80
Query: 59 ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALR-------SVVDLSALGSRQ 111
++ ++ + + S Q R+L +++
Sbjct: 81 MSFHVDFSANASSQFAGKGGDQYGE-EISAAFQVAFSRSLDILPNLSKTLLAEGYRWKIN 139
Query: 112 IIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAA-------- 163
+ + + ++ + + + ++S VLK
Sbjct: 140 VDLSVLQWAGSVPDACSLAIIGALSDLEVPEVEVAPDDGGKVSIVLKRPRTGGNMRDEEV 199
Query: 164 ----------ISCGMLCGYPIVDLDYGEDSTIDVDANFVMT---DSGHIVEVQGSAERAT 210
+S + + D I ++
Sbjct: 200 PVAICPMLLTVSKIGSANLVDCSPEEECCIRSQLLIGVAKNLNVDDYDITCIKQHG-GGL 258
Query: 211 FSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
+ M LA L + + + E
Sbjct: 259 LEMESIQDMTELASKTAGGLYQAIEKRLKTE 289
>gi|268573886|ref|XP_002641920.1| C. briggsae CBR-EXOS-9 protein [Caenorhabditis briggsae]
gi|187026401|emb|CAP34537.1| CBR-EXOS-9 protein [Caenorhabditis briggsae AF16]
Length = 434
Score = 61.4 bits (147), Expect = 1e-07, Method: Composition-based stats.
Identities = 37/257 (14%), Positives = 73/257 (28%), Gaps = 24/257 (9%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R R + R + L G+ + G+T ++ + + P +R G I
Sbjct: 23 RFDFRGLEEFRGVKLVVG---SEIGTAICTIGNTKVIAAVSAQIAEPSSMRPH-KGVIII 78
Query: 62 EYGMLPRST----GNRVKRE-AVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
+ + P + +R+ + R R I + + ++ +D
Sbjct: 79 DVDLSPMANVSNEHDRLGSKGMELIRLLELIIRDSRCIDVESLCIRAGKEI--WKVRVDV 136
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHME----------DCSNKFQLSQVLKGHVAAISC 166
++ DG A A AL + K + + +
Sbjct: 137 RILDEDGSLLDCACLAAITALQHFKRPNVTLEPHHTLIYSEYEKAPVPLNIYHMPICTTI 196
Query: 167 G--MLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAK 224
G ++D E + +D + + S S + LA
Sbjct: 197 GLLDKGQMVVIDPTEKEAACLDGSIVVACNKRREVCALHQS-TNLVLSTKQIERCVKLAM 255
Query: 225 DRIADLIKLQKDVISNE 241
R L + DVI +
Sbjct: 256 SRAEALTAVVSDVIKQD 272
>gi|50305471|ref|XP_452695.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|49641828|emb|CAH01546.1| KLLA0C11099p [Kluyveromyces lactis]
Length = 305
Score = 61.4 bits (147), Expect = 1e-07, Method: Composition-based stats.
Identities = 36/271 (13%), Positives = 78/271 (28%), Gaps = 39/271 (14%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
RL GR +Q R++ + A G V G+T + + E P + G
Sbjct: 24 RLDGRSYDQFRDVKIEIG---EAYGDVTVTMGNTKVHCRISCEIAQP-YEDRPFEGLFHI 79
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGR--ALRSVVDLSALGSRQIIIDCDVI 119
P + + S+ I++ + R AL GS+ + DV
Sbjct: 80 STETTPMAGAQFENGNNTGEEEVLISRMIEKAVRRSGALDVEGLCIIAGSKCWSLRADVH 139
Query: 120 QADGG-TRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLD 178
D A A +A + + +++ +S G+L V
Sbjct: 140 FLDCDGGLIDASCIAVMAGLLHFKKPDVTVLGERVTVHPIDEREPVSLGVLHVPICVTFS 199
Query: 179 Y-------------------------GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQ 213
+ E+ D + + +V++ ++
Sbjct: 200 FFNPDDTEENIKGEDNAEISIIDASLKEELLRDGVLTVTLNKNREVVQI---SKAGGLPM 256
Query: 214 DHFFAMLNLAKDR---IADLIKLQKDVISNE 241
+ ++++ + + V+ +
Sbjct: 257 EAL-SLIDCCHKAYGIVEKITDQIHRVVKQD 286
>gi|115908435|ref|XP_791327.2| PREDICTED: hypothetical protein [Strongylocentrotus purpuratus]
gi|115926434|ref|XP_001179322.1| PREDICTED: hypothetical protein [Strongylocentrotus purpuratus]
Length = 336
Score = 61.4 bits (147), Expect = 1e-07, Method: Composition-based stats.
Identities = 22/143 (15%), Positives = 38/143 (26%), Gaps = 2/143 (1%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+R GR R L V GS +K +T +L E P + ++ G
Sbjct: 162 LRSDGRTCLSYRNFELECGVVSNTSGSARLKLSNTQVLVGVKAEMGPPNPLNPSRGGIEF 221
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSA--LGSRQIIIDCDV 118
S + + + + L + D V
Sbjct: 222 FVDFSANASPKFAGRGGDELAAEISNMLGLVYKNKKMLDYKSLCVIAGQCVWTLYADIVV 281
Query: 119 IQADGGTRTAAITGAWVALHDCL 141
++ G A AL++
Sbjct: 282 LECGGNLLDAIALAVKAALYNTR 304
>gi|312071046|ref|XP_003138427.1| 3' exoribonuclease [Loa loa]
gi|307766409|gb|EFO25643.1| 3' exoribonuclease [Loa loa]
Length = 307
Score = 61.0 bits (146), Expect = 1e-07, Method: Composition-based stats.
Identities = 30/274 (10%), Positives = 69/274 (25%), Gaps = 33/274 (12%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+R GR R + + V GS V+ G T LL E I ++
Sbjct: 21 LRADGRSPFDYRPVIVQTGVLATTNGSARVRIGSTDLLIGVKAELISVENIALYRNRLNF 80
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
+ + + + + L + L + D++
Sbjct: 81 FVDCSANATPLFAGRGGEEFADELSAALDAAYDNNYVLPDLKKLILSPMHVWKLFVDIVL 140
Query: 121 ADGGTRTAAITGAWVAL---------------------------------HDCLQHMEDC 147
G V + +
Sbjct: 141 LQCDGNVIDAAGLGVKAALKDTEISKVIVRPADEGKYTIDLPDDNTVWKLNTSRVPLFVS 200
Query: 148 SNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAE 207
N+ ++++ +A +C + + D+ + V+ +G ++
Sbjct: 201 VNRLGSAKIVDNSLAEEACTRTSVWIAAAPHFVSDTDHNKSNQSVVKRNGGVITFMRQCG 260
Query: 208 RATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
T D M+++ + L + + +E
Sbjct: 261 GGTLEVDSLEEMISIGLKAVRQLHEALDRRLMDE 294
>gi|156839667|ref|XP_001643522.1| hypothetical protein Kpol_473p23 [Vanderwaltozyma polyspora DSM
70294]
gi|156114136|gb|EDO15664.1| hypothetical protein Kpol_473p23 [Vanderwaltozyma polyspora DSM
70294]
Length = 223
Score = 61.0 bits (146), Expect = 1e-07, Method: Composition-based stats.
Identities = 24/225 (10%), Positives = 51/225 (22%), Gaps = 14/225 (6%)
Query: 18 RRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGNRVKRE 77
+ +GS V+ DT ++ T + + R K
Sbjct: 7 IGLLTEVDGSSQVECEDTKVICAVTGPIEPKARQELPTQLALEIIVRPAKGVPSTREKLM 66
Query: 78 AVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVAL 137
R R L + + T
Sbjct: 67 EDRLRSVITPIVSLYQYPRKLCQITCQILESGESEYEFSQKELSCCINATLLALIDSGLA 126
Query: 138 HDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSG 197
+ + + V+ S + V + + V + SG
Sbjct: 127 LNSIASSVSMAILKGSDDVIINPTN--SQLLQSQSVHVLALQLIEGSRKVKNVLFLDSSG 184
Query: 198 HIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNEV 242
F++ F +L + + +L + +I ++V
Sbjct: 185 D------------FTEQQLFNVLEIGEKSCLELGLTLRSIIESKV 217
>gi|303279202|ref|XP_003058894.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226460054|gb|EEH57349.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 292
Score = 61.0 bits (146), Expect = 1e-07, Method: Composition-based stats.
Identities = 45/259 (17%), Positives = 83/259 (32%), Gaps = 33/259 (12%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+R+ R RE++ +G C V G T +L + + + P R + G +T
Sbjct: 27 IRIDLRGPFDAREVAYRFGP---KDGVCEVSLGKTRVLAVTSAKLEPPGGGR-SNEGSVT 82
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALG--------SRQI 112
P ++ N GR G + E+ ++ RA+R + I
Sbjct: 83 INVEFSPMASPNFEP-----GRPGEEASELAVVLERAIRETGAVDVESLCVLAGRRVWNI 137
Query: 113 IIDCDVIQADGGTRTAAITGAWVALHDCLQHM------------EDCSNKFQLSQVLKGH 160
+D V+ A G AA A +L + + + L
Sbjct: 138 RVDVHVLDACGNIAGAASLAANASLLSFRRPEATVDPSTQLVTVHPADAREPIPLALHHL 197
Query: 161 VAAISCGMLCGY---PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFF 217
A+ G + IVD E++ + V+ G + VQ +
Sbjct: 198 PIAVKFGFFAEHEGLLIVDPLVDEEAVMASSLIVVLNAHGELCAVQKGG-GVGVPANEIM 256
Query: 218 AMLNLAKDRIADLIKLQKD 236
+ +A +L ++
Sbjct: 257 RCVRIADKMTKELTTQLRE 275
>gi|145476653|ref|XP_001424349.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124391413|emb|CAK56951.1| unnamed protein product [Paramecium tetraurelia]
Length = 299
Score = 61.0 bits (146), Expect = 1e-07, Method: Composition-based stats.
Identities = 37/251 (14%), Positives = 71/251 (28%), Gaps = 22/251 (8%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R+ GR Q R I + G+ + G+T + T + P IR + G++
Sbjct: 15 RIDGRDPLQQRMIQCHFG--PQSTGAVELSLGETRVFATTSASITTPNPIRPS-EGFLKF 71
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
+ + G + + E +AL + G ID +V
Sbjct: 72 HLDLQVLRDTGYMHNPIKLGMEIEKYIEKVIKGSKALDTESLCILSGKNVWSIDVNVALI 131
Query: 122 DGG--TRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHV------------AAISCG 167
+ A +L + S + +V K V AI
Sbjct: 132 NNDGNLLDAMYLCCIFSLQHFRRPQVSVSLQGVKVEVEKRLVPLSIHHIPLSLTYAILEL 191
Query: 168 MLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAM----LNLA 223
+ D E++ + + + I V + + + L +
Sbjct: 192 NEQTILLQDPCLEEEAVQNGRITYSVNIYNDICHVHKPG-GSPINISILQQLTTVTLMKS 250
Query: 224 KDRIADLIKLQ 234
K ++ L
Sbjct: 251 KPYTEEIRSLL 261
>gi|260791023|ref|XP_002590540.1| hypothetical protein BRAFLDRAFT_124523 [Branchiostoma floridae]
gi|229275734|gb|EEN46551.1| hypothetical protein BRAFLDRAFT_124523 [Branchiostoma floridae]
Length = 219
Score = 61.0 bits (146), Expect = 1e-07, Method: Composition-based stats.
Identities = 31/230 (13%), Positives = 66/230 (28%), Gaps = 27/230 (11%)
Query: 11 MREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRST 70
+R + + +GS V+ GDT +L +V M + +
Sbjct: 11 LRSFECEQNLLSRPDGSASVRQGDTSVLAAVYGPGEVKMSEEIIDKATLKVIFKPKIGL- 69
Query: 71 GNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAI 130
G + +R++ SVV + I VIQ G + I
Sbjct: 70 ------------PGCAEKLQERLLRNTCESVVLAILHPRSGVNIVLQVIQDSGSLLSCCI 117
Query: 131 TGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDAN 190
A +AL D M+ V D ++S+ +
Sbjct: 118 NAACMALVDSAVPMKCLV----------SAVTCAVMEEGRIVLDPDSKQEKESSAVLTFA 167
Query: 191 FVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
F ++ + + + ++ + + L+ ++ + +
Sbjct: 168 FDSRENNVVT----CSTKGCYTPEKYQECLSACGAASKNISSFFRQAVER 213
>gi|169783852|ref|XP_001826388.1| exosome complex endonuclease 2/ribosomal RNA processing protein
[Aspergillus oryzae RIB40]
gi|238493679|ref|XP_002378076.1| exosome complex endonuclease 2, putative [Aspergillus flavus
NRRL3357]
gi|83775132|dbj|BAE65255.1| unnamed protein product [Aspergillus oryzae]
gi|220696570|gb|EED52912.1| exosome complex endonuclease 2, putative [Aspergillus flavus
NRRL3357]
Length = 292
Score = 61.0 bits (146), Expect = 1e-07, Method: Composition-based stats.
Identities = 41/262 (15%), Positives = 83/262 (31%), Gaps = 30/262 (11%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+RL GRQ +Q R ++++ G V+ G T L+ + E P R +
Sbjct: 23 VRLDGRQADQFRPLNVSFG---EEYGHVKVQLGKTSLIVRISSEVTKPHDDRPFDGIFTI 79
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSV--------VDLSALGSRQI 112
A S +GRQG + ++ R +R L + +
Sbjct: 80 ALELTAMGSPA------WENGRQGDLETYVSNVLDRVIRHSNALDTESLCVLKGVSCWNV 133
Query: 113 IIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQL------------SQVLKGH 160
D + DG AA G L + + + + K
Sbjct: 134 RADVHITNYDGNLIDAACIGVMAGLQHFRRPDAVVKDGQVIVYGVDERVPVALNITHKPL 193
Query: 161 VAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAML 220
IVD E+ + D + ++G + + + + S F
Sbjct: 194 SVTFHTFDEGKRVIVDATRKEEQASEADVVMGLNNAGDVCYLSKFS-GSPVSAMVFVNKS 252
Query: 221 NLAKDRIADLIKLQKDVISNEV 242
++A +++ ++ + + ++
Sbjct: 253 SVALEKVKEINGIIDKALQADL 274
>gi|321263017|ref|XP_003196227.1| hypothetical Protein CGB_I3550C [Cryptococcus gattii WM276]
gi|317462702|gb|ADV24440.1| conserved hypothetical protein [Cryptococcus gattii WM276]
Length = 268
Score = 61.0 bits (146), Expect = 1e-07, Method: Composition-based stats.
Identities = 32/238 (13%), Positives = 67/238 (28%), Gaps = 16/238 (6%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R R + + R I L + A GS ++ G + + P + G +
Sbjct: 34 RTD-RTDQESRPIFLKTGLISQAHGSGYIEAGGVKIACSVYG--PRPKPPPYSPQGTLNL 90
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
E P ++ R + + Q ++ ++ S++ +
Sbjct: 91 EVKFAPFASDPRRAPLRDTEPLPLSNLLTQLLLPTLHLHLLPKSSIDVYLL---VLESDT 147
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
+A +T A A+ D M ++ ++D E
Sbjct: 148 LTNVLSAGLTVASAAVADAGIEMAGLGVGGVVA------SLGADEKQGKKRVVIDPSLEE 201
Query: 182 DSTIDVDANF-VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
+ DV M + V + E D M+ A + + + +
Sbjct: 202 EKESDVKVMVGTMPALSKVTNVWLTGE---IEVDEACNMIEQAFEASKQTHSVVAEAL 256
>gi|255935559|ref|XP_002558806.1| Pc13g03690 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211583426|emb|CAP91438.1| Pc13g03690 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 297
Score = 61.0 bits (146), Expect = 1e-07, Method: Composition-based stats.
Identities = 38/256 (14%), Positives = 74/256 (28%), Gaps = 18/256 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+RL GRQ + R ++++ G ++ G T+++ + E P R +
Sbjct: 23 VRLDGRQPDDYRPLNISFG---EEYGHVNLQLGKTNIIVRISAEVTKPREDRPFDGLFNI 79
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQI--IIDCDV 118
S R + + AL + G D V
Sbjct: 80 NLELTAMGSPAWESGRTNDIEAYATNTLDRIIRHSNALDTESLCILKGVSCWSIRADVHV 139
Query: 119 IQADGGTRTAAITGAWVALHDCLQHMEDCSNK------------FQLSQVLKGHVAAISC 166
I DG AA L + + L+ K
Sbjct: 140 IDYDGNITDAACIAIMAGLQHFRRPDAVVRDGRVIVYGVEQRVPVALNITHKPLSVTFHT 199
Query: 167 GMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226
+ IVD E+ + D + +G + + A A N+A ++
Sbjct: 200 FNDSKHVIVDATLKEEQAAEGDLVIGINSAGDVCYLSKYA-GAPADAMVIVKKTNVAWEK 258
Query: 227 IADLIKLQKDVISNEV 242
+ ++ + V+ ++
Sbjct: 259 VKEINAAVEKVLQADL 274
>gi|310789357|gb|EFQ24890.1| 3' exoribonuclease family protein [Glomerella graminicola M1.001]
Length = 298
Score = 61.0 bits (146), Expect = 1e-07, Method: Composition-based stats.
Identities = 38/266 (14%), Positives = 74/266 (27%), Gaps = 39/266 (14%)
Query: 1 MRLSGRQENQMRE--ISL--TRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKH 56
+RL GR+ +Q R+ ++ V+ V+ G T +L + E VP R
Sbjct: 23 LRLDGREFDQYRKAQLTFGDEFGVAN-------VELGKTRVLAKVSAEVTVPYTDRPF-E 74
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSV--------VDLSALG 108
G + P ++ R + R++ + +R ++
Sbjct: 75 GIFQITSELSPMASPAF-----EVNRPTEAEVLLSRILEKTIRRSGALDTESLCLIAGQK 129
Query: 109 SRQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDC-SNKFQLSQVLKGHVAAISCG 167
+ D V+ DG AA AL + + + +S
Sbjct: 130 VWSVRADVHVLSHDGNLTDAACLAVIAALRHFRKPDTSNEGQSLTIFTPAEREPVPLSWL 189
Query: 168 MLCGYPIVDLDYGEDSTIDVD------------ANFVMTDSGHIVEVQGSAERATFSQDH 215
E VD + G I ++
Sbjct: 190 HSPFCVTFSFFGDEGEITLVDANWIEEQLRTSSMTVSLNKHGEISQISKLG-GTPIEAVT 248
Query: 216 FFAMLNLAKDRIADLIKLQKDVISNE 241
N+A + D L + ++++
Sbjct: 249 LLHCGNVALQKSKDFSTLVDEKLADD 274
>gi|327305819|ref|XP_003237601.1| 3' exoribonuclease [Trichophyton rubrum CBS 118892]
gi|326460599|gb|EGD86052.1| 3' exoribonuclease [Trichophyton rubrum CBS 118892]
Length = 335
Score = 61.0 bits (146), Expect = 1e-07, Method: Composition-based stats.
Identities = 32/278 (11%), Positives = 68/278 (24%), Gaps = 52/278 (18%)
Query: 6 RQENQMREISLTRRVSKYAEGSCLVKF-------GDT--------HLLTTATLEEKVPMW 50
R ++R+I L V A GS + G + L+ + + +
Sbjct: 39 RDARELRKIYLKTGVIPSASGSAYFELHPSNSSPGGSLIPPSSSLKLICSVNGPKPLSRS 98
Query: 51 IRNTKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSR 110
+ + ++A P + R + +++ + ALR +
Sbjct: 99 TPFSPNLLLSAHVKFAPFANRRRRAHVRDT-----NERDLGVHLENALRGAIIGDRWPKS 153
Query: 111 QIIIDCDVIQ----------------------ADGGTRTAAITGAWVALHDCLQHMEDCS 148
+ I +++ +T A A+ D D
Sbjct: 154 GLDITIMILEGEDDRWWGDMSTAETLTGSDGWGMMNVLAHCVTVASAAIADARIDCLDLV 213
Query: 149 NKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAER 208
+ V + + + M I E+ +
Sbjct: 214 AGGVAAVVDTCSTGEGATTSTKTVVLDPDPSEHLNISSSCVVGYMPSLDEITELWLKGDM 273
Query: 209 ATFSQ----------DHFFAMLNLAKDRIADLIKLQKD 236
S + AK + LI+ K+
Sbjct: 274 PGASSNGTYDSPNHDALMDGAIAAAKACHSVLIEAVKE 311
>gi|169621181|ref|XP_001804001.1| hypothetical protein SNOG_13798 [Phaeosphaeria nodorum SN15]
gi|160704198|gb|EAT78822.2| hypothetical protein SNOG_13798 [Phaeosphaeria nodorum SN15]
Length = 292
Score = 61.0 bits (146), Expect = 1e-07, Method: Composition-based stats.
Identities = 37/258 (14%), Positives = 74/258 (28%), Gaps = 24/258 (9%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+RL GR + R++ LT G V+ G T ++ +++ P+ R G
Sbjct: 23 IRLDGRAFDAFRKVELTFG---EEYGVADVQLGKTRVVARISIDVTTPLPERKFD-GVFQ 78
Query: 61 AEYGMLPRSTGNRVKREAVS-----GRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115
P ++ R ++ + ++ + D
Sbjct: 79 IVTEFSPMASPAFEIGRPTDAEVILSRILEKAIRRSNALDTESLCIIAGLKCF--ALRAD 136
Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHME-DCSNKFQLSQVLKGHVAAISCGMLCGYPI 174
VI DGG A+ AL + K + V + +S
Sbjct: 137 VHVIDHDGGLIDASCIAVMAALQHFRRPDVLVEGEKATVLSVRERDPIPLSILHQPLCVT 196
Query: 175 VDLDYG-----------EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLA 223
E+ + M G I ++ AT + N+A
Sbjct: 197 FSYFAEGELFLVDANLAEEQVRQGEITITMNKHGEICQIAKYG-GATVNPLAMLQCTNVA 255
Query: 224 KDRIADLIKLQKDVISNE 241
++ ++ K + + +
Sbjct: 256 LQKVKEMSKFIQQKLDED 273
>gi|330935982|ref|XP_003305202.1| hypothetical protein PTT_17982 [Pyrenophora teres f. teres 0-1]
gi|311317878|gb|EFQ86700.1| hypothetical protein PTT_17982 [Pyrenophora teres f. teres 0-1]
Length = 291
Score = 60.6 bits (145), Expect = 2e-07, Method: Composition-based stats.
Identities = 32/257 (12%), Positives = 75/257 (29%), Gaps = 23/257 (8%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+R+ R + R + LT G V+ G T ++ +++ P+ R G
Sbjct: 23 IRIDRRAFDAFRPLELTFG---DEYGVADVQLGKTRVIARISVDVTTPLPERKFD-GIFQ 78
Query: 61 AEYGMLPRSTGNRVKREAVS-----GRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115
P ++ R ++ + ++ S + D
Sbjct: 79 IVTEFSPMASPAFEVGRPTDSEVILSRILEKAIRRSNALDTESLCIIAGSKCF--ALRAD 136
Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQ-----------VLKGHVAAI 164
+I DGG A+ AL + + +L +
Sbjct: 137 VHIIDHDGGLIDASCIAVMAALQHFRRPDVVVEGEKATILSVRDREPIPLSILHQPLCVT 196
Query: 165 SCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAK 224
++D + E+ + M G + ++ AT + N+A
Sbjct: 197 FSYFEDEIFLIDANLAEEQVRQGEIILTMNKHGELCQMAKYG-GATINPLALLNCTNVAL 255
Query: 225 DRIADLIKLQKDVISNE 241
+++ ++ + + +
Sbjct: 256 EKVKEMSAFIQKRLEED 272
>gi|46138729|ref|XP_391055.1| hypothetical protein FG10879.1 [Gibberella zeae PH-1]
Length = 338
Score = 60.6 bits (145), Expect = 2e-07, Method: Composition-based stats.
Identities = 13/47 (27%), Positives = 18/47 (38%), Gaps = 1/47 (2%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGD-THLLTTATLEEK 46
+R GR Q R ++ V GS V F D T + E +
Sbjct: 26 IRPDGRSPTQFRPLTAETGVLPGTNGSARVHFADGTEAIVGVKAEIE 72
>gi|167521539|ref|XP_001745108.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163776722|gb|EDQ90341.1| predicted protein [Monosiga brevicollis MX1]
Length = 313
Score = 60.6 bits (145), Expect = 2e-07, Method: Composition-based stats.
Identities = 28/276 (10%), Positives = 66/276 (23%), Gaps = 35/276 (12%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+R GRQ + R + + A GS + T +L E V + +
Sbjct: 24 IRNDGRQRHHARPYHIETGLVSNANGSARAQHVGTDVLVGVKAERGVALGQNEDEGQIEV 83
Query: 61 AEYGM-----------------------LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRA 97
S R +++ I R
Sbjct: 84 LSRMFKKTQHALGNVVEQFAVQFASSATAMLSGREREDYGRAIALALQEMADVRGAIDRQ 143
Query: 98 LRSVVDLSALG--SRQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQ 155
++ ++I A T A+ A + + ++ +
Sbjct: 144 ALCIIAGREAFTLKVDVMILAANGGAIYDTAAVAVYAALASCDIPSVTLVKDADGDVVDW 203
Query: 156 VLKGHVAA----------ISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGS 205
+ + + ++D E + D + G + +
Sbjct: 204 EFADTPDHQLDVSRLPLLTTIASINDFAVLDATTAEMACADAAMILGIDAQGELCTCRLV 263
Query: 206 AERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
+ M +A++ + ++ + E
Sbjct: 264 GRTGGVDPELLTEMTLMAQEAGKASVASVRNALQQE 299
>gi|320033002|gb|EFW14952.1| 3' exoribonuclease [Coccidioides posadasii str. Silveira]
Length = 404
Score = 60.6 bits (145), Expect = 2e-07, Method: Composition-based stats.
Identities = 11/47 (23%), Positives = 18/47 (38%), Gaps = 1/47 (2%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGD-THLLTTATLEEK 46
+R GR Q R ++ + GS + F D T + E +
Sbjct: 34 IRPDGRSATQFRPLTAETDILPNTNGSARIGFADGTQAIVGVKAEIE 80
>gi|303322567|ref|XP_003071275.1| 3' exoribonuclease family, domain 1 containing protein
[Coccidioides posadasii C735 delta SOWgp]
gi|240110977|gb|EER29130.1| 3' exoribonuclease family, domain 1 containing protein
[Coccidioides posadasii C735 delta SOWgp]
Length = 404
Score = 60.6 bits (145), Expect = 2e-07, Method: Composition-based stats.
Identities = 11/47 (23%), Positives = 18/47 (38%), Gaps = 1/47 (2%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGD-THLLTTATLEEK 46
+R GR Q R ++ + GS + F D T + E +
Sbjct: 34 IRPDGRSATQFRPLTAETDILPNTNGSARIGFADGTQAIVGVKAEIE 80
>gi|119190093|ref|XP_001245653.1| hypothetical protein CIMG_05094 [Coccidioides immitis RS]
Length = 379
Score = 60.6 bits (145), Expect = 2e-07, Method: Composition-based stats.
Identities = 11/47 (23%), Positives = 18/47 (38%), Gaps = 1/47 (2%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGD-THLLTTATLEEK 46
+R GR Q R ++ + GS + F D T + E +
Sbjct: 34 IRPDGRSATQFRPLTAETDILPNTNGSARIGFADGTQAIVGVKAEIE 80
>gi|189441917|gb|AAI67726.1| LOC100170617 protein [Xenopus (Silurana) tropicalis]
Length = 226
Score = 60.6 bits (145), Expect = 2e-07, Method: Composition-based stats.
Identities = 27/230 (11%), Positives = 61/230 (26%), Gaps = 27/230 (11%)
Query: 11 MREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRST 70
+RE + + +GS GDT ++ ++ + +
Sbjct: 19 LREYGCEQSLLSRPDGSATFLQGDTSVMAGVYGPAEIKVSREIHNKATLEVILRPKTGL- 77
Query: 71 GNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAI 130
+ + +++I SV+ S I I ++ G + +
Sbjct: 78 ------------PAIQEKNQEQLIRETCESVIIGSLHPRTSITIVLQIVSDAGSLLSCCL 125
Query: 131 TGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDAN 190
A + L D M V + ++S +
Sbjct: 126 NAACMGLMDAGLPMRALFCG----------VTCAMDNDGTITLDPNFRQQKESRAVLTFA 175
Query: 191 FVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
T+ ++ + R +S + A+ L + +D I
Sbjct: 176 IESTERKVLMM----SNRGVYSATELQQCIAAAQIASEKLFQFYRDFIRR 221
>gi|118484971|gb|ABK94350.1| unknown [Populus trichocarpa]
Length = 53
Score = 60.6 bits (145), Expect = 2e-07, Method: Composition-based stats.
Identities = 14/40 (35%), Positives = 19/40 (47%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTA 41
R GR +Q+R +S + V A GS GDT +L
Sbjct: 5 RDDGRSPSQLRPLSCSHNVLHRAHGSASWSQGDTKVLAAV 44
>gi|328853860|gb|EGG02996.1| hypothetical protein MELLADRAFT_109732 [Melampsora larici-populina
98AG31]
Length = 319
Score = 60.6 bits (145), Expect = 2e-07, Method: Composition-based stats.
Identities = 33/270 (12%), Positives = 71/270 (26%), Gaps = 35/270 (12%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R R +R ++++ A+GSC FGD +L T +V +W KH +
Sbjct: 5 RSDARTNLDIRPLTISLSTLSRADGSCNFAFGDLKVLGAMTGPAEVKVWDEKPKHATVEV 64
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
+ G K A S + R+L + + +
Sbjct: 65 NVLPISSLPGPSSKSSAQSIKSFISPIIYLEQYPRSLIQINLQTLSKPSERWSSTRKPSR 124
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNK---------------FQLSQVLKGHVAAISC 166
G +I+ ++ + D + Q+ +
Sbjct: 125 LGFEENESISERAALMNASSIALLDGGVGMSGVGIAVAVAIVKSELVQQIGEDEDRMKED 184
Query: 167 GMLCGYPIVDLDYGEDSTIDVDANFVM-----------------TDSGHIVEVQGSAERA 209
++D E++ + +
Sbjct: 185 EDQEWVILLDPSPNEEAQATSLHLIGYQFGSHPTPSNPIIDNVRQSEPTLCFCESYG--- 241
Query: 210 TFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
+F Q + +++ IA + L + +
Sbjct: 242 SFDQTQLKGVFEVSQTGIAQIYSLIRTSLE 271
>gi|145231729|ref|XP_001399338.1| 3' exoribonuclease family protein (Rrp42) [Aspergillus niger CBS
513.88]
gi|134056242|emb|CAK37499.1| unnamed protein product [Aspergillus niger]
Length = 385
Score = 60.6 bits (145), Expect = 2e-07, Method: Composition-based stats.
Identities = 12/47 (25%), Positives = 18/47 (38%), Gaps = 1/47 (2%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGD-THLLTTATLEEK 46
+R GR Q R ++ + GS V F D T + E +
Sbjct: 35 IRPDGRSPTQFRPLTAETDILPGTNGSARVGFADGTQAIVGVKAEVE 81
>gi|119481487|ref|XP_001260772.1| 3' exoribonuclease family protein (Rrp42), putative [Neosartorya
fischeri NRRL 181]
gi|119408926|gb|EAW18875.1| 3' exoribonuclease family protein (Rrp42), putative [Neosartorya
fischeri NRRL 181]
Length = 390
Score = 60.6 bits (145), Expect = 2e-07, Method: Composition-based stats.
Identities = 12/47 (25%), Positives = 18/47 (38%), Gaps = 1/47 (2%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGD-THLLTTATLEEK 46
+R GR Q R ++ + GS V F D T + E +
Sbjct: 35 IRPDGRSPTQFRPLTAETDILPGTNGSARVGFADGTQAIVGVKAEVE 81
>gi|115384202|ref|XP_001208648.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
gi|114196340|gb|EAU38040.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
Length = 377
Score = 60.6 bits (145), Expect = 2e-07, Method: Composition-based stats.
Identities = 12/47 (25%), Positives = 18/47 (38%), Gaps = 1/47 (2%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGD-THLLTTATLEEK 46
+R GR Q R ++ + GS V F D T + E +
Sbjct: 34 IRPDGRSPTQFRPLTAETDILPGTNGSARVGFADGTQAIVGVKAEVE 80
>gi|71001928|ref|XP_755645.1| 3' exoribonuclease family protein (Rrp42) [Aspergillus fumigatus
Af293]
gi|66853283|gb|EAL93607.1| 3' exoribonuclease family protein (Rrp42), putative [Aspergillus
fumigatus Af293]
gi|159129702|gb|EDP54816.1| 3' exoribonuclease family protein (Rrp42), putative [Aspergillus
fumigatus A1163]
Length = 390
Score = 60.6 bits (145), Expect = 2e-07, Method: Composition-based stats.
Identities = 12/47 (25%), Positives = 18/47 (38%), Gaps = 1/47 (2%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGD-THLLTTATLEEK 46
+R GR Q R ++ + GS V F D T + E +
Sbjct: 35 IRPDGRSPTQFRPLTAETDILPGTNGSARVGFADGTQAIVGVKAEVE 81
>gi|67540148|ref|XP_663848.1| hypothetical protein AN6244.2 [Aspergillus nidulans FGSC A4]
gi|40739438|gb|EAA58628.1| hypothetical protein AN6244.2 [Aspergillus nidulans FGSC A4]
gi|259479547|tpe|CBF69869.1| TPA: 3' exoribonuclease family protein (Rrp42), putative
(AFU_orthologue; AFUA_2G13130) [Aspergillus nidulans
FGSC A4]
Length = 391
Score = 60.6 bits (145), Expect = 2e-07, Method: Composition-based stats.
Identities = 12/47 (25%), Positives = 18/47 (38%), Gaps = 1/47 (2%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGD-THLLTTATLEEK 46
+R GR Q R ++ + GS V F D T + E +
Sbjct: 35 IRPDGRSPTQFRPLTAETDILPGTNGSARVGFADGTQAIVGVKAEVE 81
>gi|119192860|ref|XP_001247036.1| hypothetical protein CIMG_00807 [Coccidioides immitis RS]
Length = 292
Score = 60.6 bits (145), Expect = 2e-07, Method: Composition-based stats.
Identities = 39/255 (15%), Positives = 74/255 (29%), Gaps = 18/255 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+RL GR +Q R ++LT G V+ G T ++ + E P R++ +
Sbjct: 23 VRLDGRALDQFRPLNLTFG---DEYGHVKVQLGRTTVIVRISAEVTAPRPERDSDGIFTV 79
Query: 61 AEY---GMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
+ LP R + + + + D
Sbjct: 80 SIELNDMALPGFETGRQSDLETQLSRTLDKIVRRSNALDTESLCIAKGLSC-WNVRADVH 138
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
++ ADGG L S+ + V I
Sbjct: 139 IVDADGGLVDICCLAIMAGLLHFRIPESTVSDGKVTVYSPEEKVPVPLNLTKVPLSITFN 198
Query: 178 DYGEDSTIDVDANFV---MTDSGHIVEVQGSAERATFSQDH--------FFAMLNLAKDR 226
Y E +DA +++ I+ + + E A +++ A A +
Sbjct: 199 LYDEGKITLMDATSSEEAVSEGAVIIALDKTGEIALYTKAEGTPADPLNMVACSTAALAK 258
Query: 227 IADLIKLQKDVISNE 241
+ DL L + + +
Sbjct: 259 VRDLNALVQKRLGED 273
>gi|308509680|ref|XP_003117023.1| CRE-CRN-5 protein [Caenorhabditis remanei]
gi|308241937|gb|EFO85889.1| CRE-CRN-5 protein [Caenorhabditis remanei]
Length = 214
Score = 60.2 bits (144), Expect = 2e-07, Method: Composition-based stats.
Identities = 41/237 (17%), Positives = 67/237 (28%), Gaps = 31/237 (13%)
Query: 5 GRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYG 64
GR +RE+ K A+GS G T + + + V N + + Y
Sbjct: 3 GR----LREMRCELSFLKNADGSACFSQGSTCIWASCSGPGDVHASKANEEAMTLDISY- 57
Query: 65 MLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGG 124
+ + + IQ I +A+ I + IQ DG
Sbjct: 58 ----------RANCGDNKFSVLNNIIQSTISKAINL----ELFPHTTIAVTIHGIQDDGS 103
Query: 125 TRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDST 184
AI GA AL D E + +V + ST
Sbjct: 104 IGAVAINGACFALLDNGMPFEAVFCGVLVVRVKDELI-----------IDPTAKQEASST 152
Query: 185 IDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
V GH A + + A +LA+ + + + V+ +
Sbjct: 153 GRVLFAVFNGTDGHPEVCSMDA-IGQWDFNQLEAAWSLAQPSATAIFEFYRSVMQRK 208
>gi|312217389|emb|CBX97337.1| similar to exosome complex endonuclease 2/ribosomal RNA processing
protein [Leptosphaeria maculans]
Length = 291
Score = 60.2 bits (144), Expect = 2e-07, Method: Composition-based stats.
Identities = 36/257 (14%), Positives = 75/257 (29%), Gaps = 23/257 (8%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+RL R + R + LT G V+ G T ++ +++ P+ R G
Sbjct: 23 IRLDKRAFDAFRPVELTFG---DEYGVADVQLGKTRVIARISVDVTTPLPERKFD-GIFQ 78
Query: 61 AEYGMLPRSTGNRVKREAVS-----GRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115
P ++ R ++ + ++ + D
Sbjct: 79 IVSEFSPMASPAFEIGRPTDAEVILSRILEKAIRRSNALDTESLCIIAGLKCF--ALRAD 136
Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQ-----------VLKGHVAAI 164
VI DGG A+ AL + + +L +
Sbjct: 137 VHVIDHDGGLIDASCIAVMAALQHFRRPDVVVEGEKATVLSVRERDPIPLSILHQPLCVT 196
Query: 165 SCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAK 224
+VD + E+ + M G + ++ AT + ++A
Sbjct: 197 FSYFEDEIFLVDANLAEERVRQGEVILTMNKHGELCQIAKYG-GATINPLALLNCTSIAL 255
Query: 225 DRIADLIKLQKDVISNE 241
++A+L L + + +
Sbjct: 256 QKVAELSALIQKRLEED 272
>gi|19075183|ref|NP_587683.1| exosome subunit Rrp45 (predicted) [Schizosaccharomyces pombe 972h-]
gi|21759396|sp|O74918|RRP45_SCHPO RecName: Full=Exosome complex component rrp45; AltName:
Full=Ribosomal RNA-processing protein 45
gi|3702641|emb|CAA21233.1| exosome subunit Rrp45 (predicted) [Schizosaccharomyces pombe]
Length = 291
Score = 60.2 bits (144), Expect = 2e-07, Method: Composition-based stats.
Identities = 35/258 (13%), Positives = 64/258 (24%), Gaps = 22/258 (8%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+RL GRQ + R + + G V FG T ++ T E P R +
Sbjct: 23 LRLDGRQLSDFRSLEIQFG---KEYGQVDVSFGHTRVMARITTEITKPYTDRPFDGIFSI 79
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
+ R + R E AL + G Q
Sbjct: 80 TTELTPLAYSAFEAGRVSDQEIVISRLIEKAVRRSNALDTESLCIISG--QKCWHVRASV 137
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHV----------------AAI 164
+ A +A+ L H +V V
Sbjct: 138 HFINHDGNLVDAACIAVIAALCHFRRPELTVVGEEVTVHPVEERVPVPLSILHMPICVTF 197
Query: 165 SCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAK 224
S IVD E+ + + + + ++ + + A
Sbjct: 198 SFFNNGELAIVDATLEEEDLCNGSMTITLNKNREVCQIYKAG-GIIIDPSKIISCAKTAF 256
Query: 225 DRIADLIKLQKDVISNEV 242
D + + + + ++
Sbjct: 257 DIAVSVCSVIQQALDEDL 274
>gi|116193159|ref|XP_001222392.1| hypothetical protein CHGG_06297 [Chaetomium globosum CBS 148.51]
gi|88182210|gb|EAQ89678.1| hypothetical protein CHGG_06297 [Chaetomium globosum CBS 148.51]
Length = 210
Score = 60.2 bits (144), Expect = 2e-07, Method: Composition-based stats.
Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 4/54 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWI 51
R +GR + R + +A GS LV+ GDT +L E E+VP+W
Sbjct: 38 RTNGRGTQETRPLHAKTSSLSHAHGSSLVRLGDTTVLCGVRGELLPVERVPLWD 91
>gi|71649471|ref|XP_813459.1| exosome complex exonuclease RRP41A [Trypanosoma cruzi strain CL
Brener]
gi|70878342|gb|EAN91608.1| exosome complex exonuclease RRP41A, putative [Trypanosoma cruzi]
Length = 195
Score = 60.2 bits (144), Expect = 2e-07, Method: Composition-based stats.
Identities = 32/177 (18%), Positives = 62/177 (35%), Gaps = 3/177 (1%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+RL GR+ + R ++L +G C V G + + +V + + + I
Sbjct: 13 LRLDGRRPQESRRMTLEFGKVLGCDGCCTVMSGLATVCASVYGPREVTNRLESKYNECII 72
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
+ G + + + + R++ V LS + QI I +V++
Sbjct: 73 TCEVAIAAFAGEKRRAPQRRSKLSEEMSAAVLEVARSV---VLLSQYPNSQIHICVEVLR 129
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
DG + A I A +AL D M D + + V ++ +
Sbjct: 130 QDGSDKAACINAACLALVDASVAMRDIVYAQTVGLINAVDVVDLTTEEMRSQCPTIC 186
>gi|58260288|ref|XP_567554.1| hypothetical protein [Cryptococcus neoformans var. neoformans
JEC21]
gi|134116266|ref|XP_773087.1| hypothetical protein CNBJ0820 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50255708|gb|EAL18440.1| hypothetical protein CNBJ0820 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|57229604|gb|AAW46037.1| conserved hypothetical protein [Cryptococcus neoformans var.
neoformans JEC21]
Length = 268
Score = 60.2 bits (144), Expect = 2e-07, Method: Composition-based stats.
Identities = 32/238 (13%), Positives = 69/238 (28%), Gaps = 16/238 (6%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R R + + R I L + A GS ++ G + + P + G +
Sbjct: 34 RTD-RTDQESRPIFLKTGLISQAHGSGYIEAGGVKIACSVYG--PRPKPPPYSPQGTLNL 90
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
E P ++ R + + Q ++ ++ S++ +
Sbjct: 91 EVKFAPFASDPRRAPLRDTEPLPLSNLLTQLLLPTLHLHLLPKSSIDVYLL---VLESDT 147
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
+A +T A A+ D M ++ V ++D E
Sbjct: 148 LTNVLSAGLTVASAAVADAGIEMAGLGVGGVVASVGGDEKQGRR------RVVIDPSLEE 201
Query: 182 DSTIDVDANF-VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
+ DV M G + + + E D M+ + + + + +
Sbjct: 202 EKESDVKVMVGTMPALGKVTNIWLTGEAEV---DDACNMIEQVIEASKETHSVLAEAL 256
>gi|71003882|ref|XP_756607.1| hypothetical protein UM00460.1 [Ustilago maydis 521]
gi|46096138|gb|EAK81371.1| hypothetical protein UM00460.1 [Ustilago maydis 521]
Length = 379
Score = 60.2 bits (144), Expect = 2e-07, Method: Composition-based stats.
Identities = 12/43 (27%), Positives = 17/43 (39%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE 44
R GR R + + V+ A GS + G T +L E
Sbjct: 25 RSDGRDLLAFRSLDVETGVAAQANGSSRITLGGTEILCGIKAE 67
>gi|195037132|ref|XP_001990019.1| GH18468 [Drosophila grimshawi]
gi|193894215|gb|EDV93081.1| GH18468 [Drosophila grimshawi]
Length = 235
Score = 60.2 bits (144), Expect = 2e-07, Method: Composition-based stats.
Identities = 35/234 (14%), Positives = 77/234 (32%), Gaps = 31/234 (13%)
Query: 9 NQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPR 68
+++RE+ ++GS + G T ++ +V + + ++ Y
Sbjct: 12 DKLREMQCKFNPLSRSDGSVMYSQGATVVIAAVLGPIEVKTQNLSIEGSYLECNY----- 66
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
R K ++ R I+ ++ AL S A ++ + ++ G T
Sbjct: 67 ----RPKAGLPQVKERIREAAIRDVLELALLS----EAYPRSKMSLQVQELEDRGSTDAC 118
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG-YPIVDLDYGEDSTIDV 187
A+ A +A LK AA+ C + ++D + E
Sbjct: 119 ALNSACLA-------------LLIGGLPLKYSFAAVHCIINEQGEFVLDPELNETLRQQA 165
Query: 188 DANFVMTD-SGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
F G+++ VQ + F F + + + A + + ++
Sbjct: 166 SFTFAFDSVDGNLLLVQ---TKGAFKIAQFNDIECICRAASAQIFDFYRSNLAK 216
>gi|322703882|gb|EFY95484.1| 3' exoribonuclease family protein [Metarhizium anisopliae ARSEF
23]
Length = 339
Score = 60.2 bits (144), Expect = 3e-07, Method: Composition-based stats.
Identities = 12/43 (27%), Positives = 21/43 (48%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE 44
R +GR ++R ++ + GS LV+ GDT ++ E
Sbjct: 36 RSNGRAPEEVRPTTVNLSSLSHPHGSSLVRMGDTTVICGVRGE 78
>gi|170086802|ref|XP_001874624.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164649824|gb|EDR14065.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 345
Score = 60.2 bits (144), Expect = 3e-07, Method: Composition-based stats.
Identities = 26/153 (16%), Positives = 45/153 (29%), Gaps = 11/153 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGD--------THLLTTATLEEKVPMWIR 52
+R GR + R ++L ++ A GS + G T +L A +E +
Sbjct: 24 LRTDGRSLHDFRSVALETGIAPLANGSARISIGQDPHDGSGGTEVLAAAKVEVESVEEG- 82
Query: 53 NTKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQI 112
G + P + + + Q + +L G +
Sbjct: 83 GVDAGRVVCTVSCSPAAYPQLATAALEDLQYDMTTIVHQTLSHPSLHPKNLRILPGKKSW 142
Query: 113 --IIDCDVIQADGGTRTAAITGAWVALHDCLQH 143
+D V+ G A A AL D
Sbjct: 143 LLNLDLIVLADSGNIYDALFMAARAALWDTKIP 175
>gi|322698522|gb|EFY90291.1| 3' exoribonuclease family protein (Rrp42), putative [Metarhizium
acridum CQMa 102]
Length = 330
Score = 59.9 bits (143), Expect = 3e-07, Method: Composition-based stats.
Identities = 17/84 (20%), Positives = 31/84 (36%), Gaps = 3/84 (3%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGD-THLLTTATLEEKVPMWIRN--TKHG 57
+R GR Q R ++ + GS V F D T + E + +R+ G
Sbjct: 26 IRPDGRSSTQFRPLTAETGILPGTNGSARVCFSDGTEAIVGVKAEIEKTPGVRDAEDNDG 85
Query: 58 WITAEYGMLPRSTGNRVKREAVSG 81
++A T +R + + +
Sbjct: 86 KLSAIANAAADDTRSRARGDWLEM 109
>gi|289617941|emb|CBI55518.1| unnamed protein product [Sordaria macrospora]
Length = 357
Score = 59.9 bits (143), Expect = 3e-07, Method: Composition-based stats.
Identities = 14/43 (32%), Positives = 22/43 (51%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE 44
R +GR ++ R I + +A GS LV+ GDT ++ E
Sbjct: 38 RTNGRAPHEARPIHIHTSSLAHANGSALVRTGDTTVVCGVRAE 80
>gi|219124479|ref|XP_002182530.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217405876|gb|EEC45817.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 764
Score = 59.9 bits (143), Expect = 3e-07, Method: Composition-based stats.
Identities = 16/47 (34%), Positives = 24/47 (51%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVP 48
R GR +Q R+ ++ R + A GS L+K G T +L T + P
Sbjct: 49 RPDGRLFHQTRQTNIQRGILNNACGSSLIKLGTTQVLAAVTYQVGQP 95
>gi|66357222|ref|XP_625789.1| RPR46-like RNAse PH domain [Cryptosporidium parvum Iowa II]
gi|46226980|gb|EAK87946.1| RPR46-like RNAse PH domain [Cryptosporidium parvum Iowa II]
Length = 244
Score = 59.9 bits (143), Expect = 3e-07, Method: Composition-based stats.
Identities = 38/249 (15%), Positives = 70/249 (28%), Gaps = 28/249 (11%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+R GR + IS + GS G + ++ T E+ +
Sbjct: 8 IRYDGRTNLECGAISANVGIFNSLNGSAEFSIGLSKVIATVWRPEEA------------S 55
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
+ R + G+ + I+ I R V+D ++ I I ++
Sbjct: 56 SNKCKSYLEVILRPRI----GQPQESHKLIEYHILRLFEKVIDFNSFSRCVISITLQIVS 111
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
DG I A +AL D ME + + +
Sbjct: 112 EDGPILPVCINAAVLALIDLGIPME---FFPLAVSIAESSHFYGERDISHLMLDPTQSEF 168
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFA-----MLNLAKDR--IADLIKL 233
E T+ + + + S + L++A I L ++
Sbjct: 169 EQCISCSTIVINTTEKNIFSCI--TNKGTGISHNELLDEIHPISLSIATSNSLIRHLSEI 226
Query: 234 QKDVISNEV 242
D I +V
Sbjct: 227 LLDNIKCKV 235
>gi|303312521|ref|XP_003066272.1| 3' exoribonuclease family, domain 1 containing protein
[Coccidioides posadasii C735 delta SOWgp]
gi|240105934|gb|EER24127.1| 3' exoribonuclease family, domain 1 containing protein
[Coccidioides posadasii C735 delta SOWgp]
Length = 292
Score = 59.9 bits (143), Expect = 3e-07, Method: Composition-based stats.
Identities = 39/255 (15%), Positives = 74/255 (29%), Gaps = 18/255 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+RL GR +Q R ++LT G V+ G T ++ + E P R++ +
Sbjct: 23 VRLDGRALDQFRPLNLTFG---DEYGHVKVQLGRTSVIVRISAEVTAPRPERDSDGIFTV 79
Query: 61 AEY---GMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
+ LP R + + + + D
Sbjct: 80 SIELNDMALPGFETGRQSDLETQLSRTLDKIVRRSNALDTESLCIAKGLSC-WNVRADVH 138
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
++ ADGG L S+ + V I
Sbjct: 139 IVDADGGLVDICCLAIMAGLLHFRIPESTVSDGKVTVYSPEEKVPVPLNLTKVPLSITFN 198
Query: 178 DYGEDSTIDVDANFV---MTDSGHIVEVQGSAERATFSQDH--------FFAMLNLAKDR 226
Y E +DA +++ I+ + + E A +++ A A +
Sbjct: 199 LYDEGKITLMDATSSEEAVSEGAVIIALDKTGEIALYTKAEGTPADPLNMVACSTAALAK 258
Query: 227 IADLIKLQKDVISNE 241
+ DL L + + +
Sbjct: 259 VRDLNALVQKRLGED 273
>gi|194675249|ref|XP_001790575.1| PREDICTED: exosome component 5-like [Bos taurus]
gi|297485653|ref|XP_002695041.1| PREDICTED: exosome component 5-like [Bos taurus]
gi|296477725|gb|DAA19840.1| exosome component 5-like [Bos taurus]
Length = 242
Score = 59.9 bits (143), Expect = 3e-07, Method: Composition-based stats.
Identities = 24/228 (10%), Positives = 55/228 (24%), Gaps = 20/228 (8%)
Query: 11 MREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRST 70
+R + + + +GS GDT +L +V + +
Sbjct: 28 LRHFACEQNLLSRPDGSASFLQGDTSVLAGVYGPAEVKISKEIFNKATLEVILRPKTGLP 87
Query: 71 GNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAI 130
G K R + + + R +VV + + +
Sbjct: 88 GVAEKSRERLIRNTCEAVVLGALHPRTSITVVLQ------VVSDAGSKLNHCLWLLACCL 141
Query: 131 TGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDAN 190
A +AL D M V +++ +
Sbjct: 142 NAACMALVDAGVPMRALFCG----------VTCALDSDGTLMLDPTAKQEKEARAVLTFA 191
Query: 191 FVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
+ + S + +S L A+ + + ++ +
Sbjct: 192 LDSVERKLL----MSTTKGLYSDTELQQCLAAAQTASTHVFRFYRESL 235
>gi|156096300|ref|XP_001614184.1| exosome complex exonuclease [Plasmodium vivax SaI-1]
gi|148803058|gb|EDL44457.1| exosome complex exonuclease, putative [Plasmodium vivax]
Length = 281
Score = 59.9 bits (143), Expect = 3e-07, Method: Composition-based stats.
Identities = 32/263 (12%), Positives = 75/263 (28%), Gaps = 27/263 (10%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+R+ GR + R I + + + A+GS V + +++ L P + G I
Sbjct: 15 IRVDGRTLSTYRTIEINKNILVSADGSSSVMNEENNVICGIKLSLLTP-SLDAPDEGVIN 73
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEI-QRMIGRALRSVVDLSALGSRQIIIDCDVI 119
+ NR+K++ + + I R ++ + + I +
Sbjct: 74 LQIDCPASVVANRIKKDHLQIMSSIIYDLCLKNNIDRKKMCILPSTFVWGVDINVMVLNA 133
Query: 120 QADGGTRTAAIT--------------------GAWVALHDCLQHMEDCSNKFQLSQVLKG 159
+ C + + + + +
Sbjct: 134 GGGLLDIISMAIYVALKDTVVPVVKPKKKIDESNTFHHTKCADYQVEIVENQKTNFPYEN 193
Query: 160 HVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDH--FF 217
+S G + + D+ E+ ++ +T SG V + S +
Sbjct: 194 VPICVSIGEINNKYVYDMSKVEEELVENIFVVAVTSSGKCVAFH---KLYGISMEIASIL 250
Query: 218 AMLNLAKDRIADLIKLQKDVISN 240
M + L + + I+
Sbjct: 251 NMTENSSRISHHLFEKINEAIAK 273
>gi|296423271|ref|XP_002841178.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295637413|emb|CAZ85369.1| unnamed protein product [Tuber melanosporum]
Length = 330
Score = 59.9 bits (143), Expect = 3e-07, Method: Composition-based stats.
Identities = 15/43 (34%), Positives = 21/43 (48%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE 44
R SGR + R SL +A GS +V+ GDT ++ E
Sbjct: 42 RPSGRNPDTFRTPSLHTNSLSHAHGSAVVRTGDTAVVCGVRGE 84
>gi|224001130|ref|XP_002290237.1| predicted protein [Thalassiosira pseudonana CCMP1335]
gi|220973659|gb|EED91989.1| predicted protein [Thalassiosira pseudonana CCMP1335]
Length = 145
Score = 59.9 bits (143), Expect = 3e-07, Method: Composition-based stats.
Identities = 34/144 (23%), Positives = 52/144 (36%), Gaps = 3/144 (2%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R S R+ +R +S A+GS +K G+TH++ + R + A
Sbjct: 5 RPSQRKPTTLRPLSAELSPLHRADGSASLKCGNTHIMVAIHGPIAPRISHR---EKYDRA 61
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
+ + A G G E G AL S + L I + ++QA
Sbjct: 62 VVNVAFSKGLMMMAGSAAGGGSSGDVVEHDTADGDALSSCIMLEKYPRCVIQVVIQIVQA 121
Query: 122 DGGTRTAAITGAWVALHDCLQHME 145
DG +A A +AL D M
Sbjct: 122 DGSVLGSATNCAVMALMDAGVAMR 145
>gi|167392472|ref|XP_001740171.1| exosome complex exonuclease RRP45 [Entamoeba dispar SAW760]
gi|165895849|gb|EDR23438.1| exosome complex exonuclease RRP45, putative [Entamoeba dispar
SAW760]
Length = 244
Score = 59.9 bits (143), Expect = 3e-07, Method: Composition-based stats.
Identities = 34/236 (14%), Positives = 63/236 (26%), Gaps = 19/236 (8%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+R+ R+ ++ RE+S GS G++ L +E P R + +
Sbjct: 12 IRIDARKLDEFREVS----FVCREPGSVETHIGNSKALGECVVEPVSPGRSRPDQGIFNI 67
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI- 119
+ + R + G+ E + RA+ + G I V
Sbjct: 68 RVNFLEMANPNFYDSRGPRDLIEIGKVVERGLLSTRAIDVDGLVIIRGKLVWKITVCVHI 127
Query: 120 -QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQ-----------VLKGHVAAISCG 167
G A AL ++ + +
Sbjct: 128 INDCGNLMDLVSITAISALLTAVRREVQICGTDVKILTPEERKPVPLAIHHIPITVSFGI 187
Query: 168 MLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLA 223
G P++D E+S + G + VQ S S ++
Sbjct: 188 TDSGVPLLDPSEREESVCKSRLTIAINKEGEVCAVQKSG--TPISMKVIQRCCDVC 241
>gi|239614072|gb|EEQ91059.1| 3' exoribonuclease [Ajellomyces dermatitidis ER-3]
gi|327353426|gb|EGE82283.1| 3' exoribonuclease [Ajellomyces dermatitidis ATCC 18188]
Length = 350
Score = 59.9 bits (143), Expect = 3e-07, Method: Composition-based stats.
Identities = 35/288 (12%), Positives = 78/288 (27%), Gaps = 62/288 (21%)
Query: 6 RQENQMREISLTRRVSKYAEGSCLVKFGDTHLL------------------TTATLEEKV 47
R+ +++R+I L + A GS ++F + +L + + +
Sbjct: 41 RKPDELRKIFLKTGLIPSASGSAYLEFQPSAILHRSKSKTLIPPSSSLKLTCSVHGPKPL 100
Query: 48 PMWIRNTKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSAL 107
P + + ++ P ++ R +++ + ALR V+
Sbjct: 101 PRSAPFSPNLLLSTHVKFAPFASRRRRGYIR-----DVNERDLGVHLETALRGVIIGERW 155
Query: 108 GSRQIIIDCDVIQAD----------------------GGTRTAAITGAWVALHDCLQHME 145
+ I V++ + IT A A+ D
Sbjct: 156 PKSGLDITVTVLEGEDDRWWGDVLSSGPLGGIDGWGLMNVLAGCITVASAAIADARIDCM 215
Query: 146 DCSNKFQLSQVLKGHV-------AAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGH 198
D + V V + G + + M
Sbjct: 216 DLITGGIAAFVENPDVDTSERANTSSKKGRGQSLVLDPDPSEHQVIVSACVVGYMPSRDE 275
Query: 199 IVEVQGSAERATFS----------QDHFFAMLNLAKDRIADLIKLQKD 236
I E+ + + S + A ++ A+ A L + ++
Sbjct: 276 ITELWLKGDTSNISAGLQSPSASHEALIDAAVDAARGAQAVLAEAVRE 323
>gi|261204769|ref|XP_002629598.1| 3' exoribonuclease [Ajellomyces dermatitidis SLH14081]
gi|239587383|gb|EEQ70026.1| 3' exoribonuclease [Ajellomyces dermatitidis SLH14081]
Length = 350
Score = 59.9 bits (143), Expect = 3e-07, Method: Composition-based stats.
Identities = 35/288 (12%), Positives = 78/288 (27%), Gaps = 62/288 (21%)
Query: 6 RQENQMREISLTRRVSKYAEGSCLVKFGDTHLL------------------TTATLEEKV 47
R+ +++R+I L + A GS ++F + +L + + +
Sbjct: 41 RKPDELRKIFLKTGLIPSASGSAYLEFQPSAILHRSKSKTLIPPSSSLKLTCSVHGPKPL 100
Query: 48 PMWIRNTKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSAL 107
P + + ++ P ++ R +++ + ALR V+
Sbjct: 101 PRSAPFSPNLLLSTHVKFAPFASRRRRGYIR-----DVNERDLGVHLETALRGVIIGERW 155
Query: 108 GSRQIIIDCDVIQAD----------------------GGTRTAAITGAWVALHDCLQHME 145
+ I V++ + IT A A+ D
Sbjct: 156 PKSGLDITVTVLEGEDDRWWGDVLSSGPLGGIDGWGLMNVLAGCITVASAAIADARIDCM 215
Query: 146 DCSNKFQLSQVLKGHV-------AAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGH 198
D + V V + G + + M
Sbjct: 216 DLITGGIAAFVENPDVDTSERANTSSKKGRGQSLVLDPDPSEHQVIVSACVVGYMPSRDE 275
Query: 199 IVEVQGSAERATFS----------QDHFFAMLNLAKDRIADLIKLQKD 236
I E+ + + S + A ++ A+ A L + ++
Sbjct: 276 ITELWLKGDTSNISAGSQSPSASHEALIDAAVDAARGAQAVLAEAVRE 323
>gi|58259313|ref|XP_567069.1| Opa-interacting protein OIP2 [Cryptococcus neoformans var.
neoformans JEC21]
gi|134107613|ref|XP_777691.1| hypothetical protein CNBA8110 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50260385|gb|EAL23044.1| hypothetical protein CNBA8110 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|57223206|gb|AAW41250.1| Opa-interacting protein OIP2, putative [Cryptococcus neoformans
var. neoformans JEC21]
Length = 297
Score = 59.5 bits (142), Expect = 4e-07, Method: Composition-based stats.
Identities = 31/190 (16%), Positives = 56/190 (29%), Gaps = 22/190 (11%)
Query: 2 RLSGR-----------------QENQM-REISLTRRVSKYAEGSCLVKFGDTHLLTTATL 43
R GR + + R++S+ A GS LV+ GDT ++
Sbjct: 46 RPDGRPILPSSSFQSTASASASAADDVWRQVSINTGSISTAHGSALVRMGDTTMVCGVKA 105
Query: 44 EEKVPMWIRNTKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVD 103
E P G++ + S+ Q + + ++ +
Sbjct: 106 EVGEPDA-EAPGEGFVVPNIDLPALSSPKFKPGPPGDEAQTYSNWLYELLVSSKTIPLSS 164
Query: 104 LSALGS---RQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGH 160
L + ID I DG AA+ AL + + Q + +
Sbjct: 165 LLIAPGKAAWVLYIDVVCINYDGNAFDAAVLAVMAALRNTRLPKAVYDDDTQRTICSRTE 224
Query: 161 VAAISCGMLC 170
+S G +
Sbjct: 225 RYPLSLGRMP 234
>gi|213410258|ref|XP_002175899.1| exosome subunit Rrp45 [Schizosaccharomyces japonicus yFS275]
gi|212003946|gb|EEB09606.1| exosome subunit Rrp45 [Schizosaccharomyces japonicus yFS275]
Length = 291
Score = 59.5 bits (142), Expect = 4e-07, Method: Composition-based stats.
Identities = 32/258 (12%), Positives = 66/258 (25%), Gaps = 22/258 (8%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAE--GSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW 58
+RL GR+ + R+ + + G V G+T +L T + P + +
Sbjct: 23 VRLDGREMHAFRQPVIKFG-----DKFGEVDVSLGETRVLCHITAQIAKPYPDKPFDGIF 77
Query: 59 ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDV 118
R + R E RAL + G + + V
Sbjct: 78 TIHTELTPMAHPSLEAGRLSDQEVLISRLIETSVRRSRALDTESLCILSGQKCWSVRATV 137
Query: 119 IQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLD 178
+ V C D + + V + PI
Sbjct: 138 HFVNHDGNMVDAACLAVVAALCHYRRPDVTVTGEEVVVHSPEERVPVPLSVLHMPICTTF 197
Query: 179 Y--------------GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAK 224
+ E+ + + I + + Q + + A
Sbjct: 198 FFFHDGSISVTDATAEEEELSTGTMTITLNKNREICQFFKAG-GVPIDQTKIISCAHAAF 256
Query: 225 DRIADLIKLQKDVISNEV 242
++ + K V++ ++
Sbjct: 257 KNTQEICEQLKQVLAQDL 274
>gi|313870783|gb|ADR82276.1| exosome complex exonuclease [Blumeria graminis f. sp. tritici]
Length = 303
Score = 59.5 bits (142), Expect = 4e-07, Method: Composition-based stats.
Identities = 38/262 (14%), Positives = 72/262 (27%), Gaps = 25/262 (9%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+RL R +Q R I+L ++ G + G T + + E P R + +
Sbjct: 23 LRLDARPFDQFRPITLA--FAER-YGVVDLSLGGTRIHAHVSAEVTQPYPDRPYEGLFTI 79
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALG--SRQIIIDCDV 118
R + R E AL G I +D V
Sbjct: 80 VTELSPMTHAHLEPGRNSPLEMLVSRLLEKTIRRSGALDPESLCLLAGQTCWSIRVDVHV 139
Query: 119 IQADGGTRTAAITGAWVALHDCLQHMEDCSNK----------FQLSQVLKGHVAAISCGM 168
+ +G AA AL + + + L I+
Sbjct: 140 LSVEGNLIDAASIAVIAALAHFKRPETNTVGGEVTLYTLAEREPVPLSLLHWPLCITFSF 199
Query: 169 LCGY---------PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAM 219
+ ++D + E+ + M G I ++ A
Sbjct: 200 YKDHSEGASGEDTVLLDANELEEHMREGSMTIGMNKHGEICQLVKLG-GAPVDAASLLKC 258
Query: 220 LNLAKDRIADLIKLQKDVISNE 241
+NLA ++ ++ + + +
Sbjct: 259 VNLASMKVKEVSDIIAKQLQED 280
>gi|296423319|ref|XP_002841202.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295637437|emb|CAZ85393.1| unnamed protein product [Tuber melanosporum]
Length = 293
Score = 59.5 bits (142), Expect = 4e-07, Method: Composition-based stats.
Identities = 37/264 (14%), Positives = 82/264 (31%), Gaps = 36/264 (13%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+R+ GR + RE+ L G V+ G T +L + E V + G T
Sbjct: 23 LRIDGRDLDSFRELELNFGDD---YGLADVQLGKTRVLARVSAEV-VKPFTDRPFDGIFT 78
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSV--------VDLSALGSRQI 112
+ P ++ RQ + + R+I +A+R ++ QI
Sbjct: 79 ITTELGPMASPAFEPG-----RQTEQEVLLSRLIEKAIRRSNALDTESLCIVAGQKCWQI 133
Query: 113 IIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY 172
D + DG A+ AL + +++ + +L
Sbjct: 134 RADVHFLSHDGALVDASCIAVVAALQHFRRPDVS-VEGEKVTIHTMTERIPVPLSILHVP 192
Query: 173 PIVDLDYGEDSTIDV-------------DANFVMTDSGHIVEVQGSAERATFSQD--HFF 217
V + D + + D + G + ++ A+ + + +
Sbjct: 193 ICVTFSFYLDGEVCLVDATLQEEQLRQGDMTITLNKFGELCQI---AKAGGLAINGLNLL 249
Query: 218 AMLNLAKDRIADLIKLQKDVISNE 241
+A ++ ++ + + +
Sbjct: 250 RCAKIALVKVGEIAATVQRRLEED 273
>gi|50290581|ref|XP_447723.1| hypothetical protein [Candida glabrata CBS 138]
gi|49527034|emb|CAG60670.1| unnamed protein product [Candida glabrata]
Length = 303
Score = 59.5 bits (142), Expect = 4e-07, Method: Composition-based stats.
Identities = 25/211 (11%), Positives = 63/211 (29%), Gaps = 5/211 (2%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
RL GR+ +Q R++ + G V+ G T + + + P + G
Sbjct: 24 RLDGRRLDQFRDVQIEFG---KEYGDVTVRMGKTLVQCRISCQITEP-YEDRPFEGLFVI 79
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
+ P + + + ++ I++ + R+ V+ + +
Sbjct: 80 STEISPMAGPQFENGNSTGEDEVLCARIIEKAVRRSGALDVEGLCIVAGSKCWAVRADVH 139
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISC-GMLCGYPIVDLDYG 180
I + +A+ L H V+ V + + + + +
Sbjct: 140 YLNCDGGFIDASCIAVMAALSHFRKPDISVHGEDVVVYPVDEREPVPLGILHIPICVTFS 199
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATF 211
+ D + N + I + + +
Sbjct: 200 FFNPQDTEENIKGDSNAEISIIDATTKEELL 230
>gi|302685534|ref|XP_003032447.1| hypothetical protein SCHCODRAFT_15142 [Schizophyllum commune H4-8]
gi|300106141|gb|EFI97544.1| hypothetical protein SCHCODRAFT_15142 [Schizophyllum commune H4-8]
Length = 281
Score = 59.1 bits (141), Expect = 5e-07, Method: Composition-based stats.
Identities = 36/255 (14%), Positives = 72/255 (28%), Gaps = 18/255 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+RL GRQ +MR +T G FG T ++ + P R
Sbjct: 22 LRLDGRQPLEMRTPEITFGP---ELGWVECAFGQTRVVAQVDAKMVRPPPERPFDGIITI 78
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIII--DCDV 118
ST + R + R + A+ G R +
Sbjct: 79 HSELSPMASTEYEIGRASEEEVVITRVLDKLIKRSEAVDRESLCVLAGERVWHVRLTIHC 138
Query: 119 IQADGGTRTAAITGAWVALHDCLQHMED-CSNKFQLSQVLKGHVAAISCGMLCGY----- 172
+ G A A AL + + ++ + + ++
Sbjct: 139 LADAGNMLDCACFAAMAALKHFRRPDVEVVGDEVTIHPPSERAPVPLAINHAPYCLTFAF 198
Query: 173 ------PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226
P++D E + + + I +Q A + D ++++A +
Sbjct: 199 FGSGAPPLLDPSQLEATLALGTLSVALNAQREICVMQKMG-GAPLAADEILGLVDVAVGK 257
Query: 227 IADLIKLQKDVISNE 241
+L L + + +
Sbjct: 258 AKELDGLVERRLKQD 272
>gi|238496865|ref|XP_002379668.1| 3' exoribonuclease family protein (Rrp42), putative [Aspergillus
flavus NRRL3357]
gi|220694548|gb|EED50892.1| 3' exoribonuclease family protein (Rrp42), putative [Aspergillus
flavus NRRL3357]
Length = 358
Score = 59.1 bits (141), Expect = 5e-07, Method: Composition-based stats.
Identities = 12/47 (25%), Positives = 18/47 (38%), Gaps = 1/47 (2%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGD-THLLTTATLEEK 46
+R GR Q R ++ + GS V F D T + E +
Sbjct: 35 IRPDGRSATQFRPLTAETDILPGTNGSARVGFADGTQAIVGVKAEVE 81
>gi|39971537|ref|XP_367159.1| hypothetical protein MGG_07084 [Magnaporthe oryzae 70-15]
gi|145019548|gb|EDK03776.1| hypothetical protein MGG_07084 [Magnaporthe oryzae 70-15]
Length = 302
Score = 59.1 bits (141), Expect = 5e-07, Method: Composition-based stats.
Identities = 40/273 (14%), Positives = 76/273 (27%), Gaps = 43/273 (15%)
Query: 6 RQENQMREISLTRRVSKYAEGSCLVKF---------GDT-----HLLTTATLEEKVPMWI 51
R N +R+I L ++ A GS ++ G+T L T +P
Sbjct: 35 RPPNAIRKIFLKTGITPSASGSAYLEIENPVVSGKEGETSTSGLKLSCTVHGPRALPRST 94
Query: 52 RNTKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQ 111
+ H ++ P +T R S +++ + ALR V+
Sbjct: 95 PFSPHIILSTHIKYAPFATKQRRGYIRDS-----TERDLSVHLETALRGVIIADRWPKSG 149
Query: 112 IIIDCDVIQADGG-------------------TRTAAITGAWVALHDCLQHMEDCSNKFQ 152
+ + VI+ D + IT A AL D D
Sbjct: 150 VDVIVSVIEGDQDRRLPLQDSGSGEEAWSTMSVLSGCITVASAALADAGIDCVDMVAGGV 209
Query: 153 LSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQ----GSAER 208
+ V A S D + + + + + +A
Sbjct: 210 AALVRDDSDGAKSVEGGSIVVDPVPA-EHDKIVAACCVAYLPNRDEVTNLWFKGDAAASD 268
Query: 209 ATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
+ + + +K L+ K+ + +
Sbjct: 269 SALYLNIVNNSVRASKIANRVLVDSLKETLQQQ 301
>gi|169774569|ref|XP_001821752.1| 3' exoribonuclease family protein (Rrp42) [Aspergillus oryzae
RIB40]
gi|83769615|dbj|BAE59750.1| unnamed protein product [Aspergillus oryzae]
Length = 385
Score = 59.1 bits (141), Expect = 5e-07, Method: Composition-based stats.
Identities = 12/47 (25%), Positives = 18/47 (38%), Gaps = 1/47 (2%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGD-THLLTTATLEEK 46
+R GR Q R ++ + GS V F D T + E +
Sbjct: 35 IRPDGRSATQFRPLTAETDILPGTNGSARVGFADGTQAIVGVKAEVE 81
>gi|327276287|ref|XP_003222901.1| PREDICTED: exosome complex exonuclease RRP46-like isoform 2 [Anolis
carolinensis]
Length = 262
Score = 59.1 bits (141), Expect = 5e-07, Method: Composition-based stats.
Identities = 21/240 (8%), Positives = 58/240 (24%), Gaps = 16/240 (6%)
Query: 11 MREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYG------ 64
+R I + + +GS GDT +L +V + +
Sbjct: 16 LRRIVCEQGLLSRPDGSASWMQGDTSVLAGVYGPSEVKVSKEIYDKATLEVMLRPKVGLP 75
Query: 65 -------MLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
+ N ++ + +I++ + + + +
Sbjct: 76 GLQPSLPRSAGVSPNYNSDNSIFVPEDLEVLKIKQSSEQGVYERSREQMIKKTCEAVVLG 135
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML-CGYPIVD 176
+ C + ++C + G +D
Sbjct: 136 TLHPRSSITIVLQVITDAGSLLASCLNAACMGLMDAGLPMGSLFCGVTCALDADGNFTLD 195
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
++ F + V S+ + T S + + ++ + + +D
Sbjct: 196 PTAKQEKEAQTVLTFAIDSIEKKVL--MSSMKGTCSVEQLQQCVAASQRAADTIFQFYRD 253
>gi|321253395|ref|XP_003192721.1| exosome complex exonuclease rrp45 [Cryptococcus gattii WM276]
gi|317459190|gb|ADV20934.1| Exosome complex exonuclease rrp45, putative [Cryptococcus gattii
WM276]
Length = 281
Score = 59.1 bits (141), Expect = 5e-07, Method: Composition-based stats.
Identities = 34/253 (13%), Positives = 71/253 (28%), Gaps = 17/253 (6%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
RL GR QMR++ G + G T +L + P R + +
Sbjct: 24 RLDGRLPLQMRDVRYIFG---DELGCVECRLGKTSILAQVSATIVKPRDDRPYEGFLLIN 80
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGS--RQIIIDCDVI 119
S+ R GR E A+ G Q+ + +
Sbjct: 81 SEIGPMASSVYENGRPGDDEVMIGRLLEKSIRRTEAIDREALCILAGEKVWQLRLTLHFL 140
Query: 120 QADGGTRTAAITGAWVALHDCLQHMED-CSNKFQLSQVLKGHVAAISCGMLCGY------ 172
G A AL + + ++ + + A++
Sbjct: 141 SDSGNLLDCAALAGMAALKHFRKPDVEVIGDEVIIHSPDERAPVALAIHHTPLCLTFAYF 200
Query: 173 ----PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIA 228
PI+D + E + I + + A + ++ D++
Sbjct: 201 ENLPPILDPSHIEAILCSGTLTLTLNAQREICVLSKAG-GAPLGAEEIMGVVKFGVDKVR 259
Query: 229 DLIKLQKDVISNE 241
+L++ ++ + +
Sbjct: 260 ELVRHLEEELEKD 272
>gi|194751933|ref|XP_001958278.1| GF10840 [Drosophila ananassae]
gi|190625560|gb|EDV41084.1| GF10840 [Drosophila ananassae]
Length = 325
Score = 59.1 bits (141), Expect = 5e-07, Method: Composition-based stats.
Identities = 40/238 (16%), Positives = 71/238 (29%), Gaps = 17/238 (7%)
Query: 12 REISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPM-WIRNTKHGWITAEYGMLPRST 70
R+ + V GS +++G+T +L ++ R G I +T
Sbjct: 48 RKTFIRAGVLTTVRGSAYMEYGNTKVLAIVAPPHELMRASARRMNMGVINCYVNFAAFAT 107
Query: 71 GNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAI 130
G R + + M+ +AL VV + + Q+ I ++ DG + AI
Sbjct: 108 GELESVP-------ERERHLGSMLTKALEPVVCRTEFLNFQLDIRVLILDDDGCLLSTAI 160
Query: 131 TGAWVALHDCLQHMEDCSNKFQLSQVLKG------HVAAISCGMLCGYPIVDLDYGEDST 184
VAL +C D G I
Sbjct: 161 NCCGVALVECGISTYDLITASTACIYRNHVFLNPSSKVEELLWKHRGVQIEAASGSAPEE 220
Query: 185 IDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNEV 242
+ M I + Q S + + +L+ L +L + V++ V
Sbjct: 221 HGLVITASMDTFDQIAQCQQCGY---LSPETYVKLLDYTLAVNKSLRQLIRQVLTTRV 275
>gi|299750147|ref|XP_001836568.2| cytidylyltransferase [Coprinopsis cinerea okayama7#130]
gi|298408765|gb|EAU85276.2| cytidylyltransferase [Coprinopsis cinerea okayama7#130]
Length = 646
Score = 59.1 bits (141), Expect = 5e-07, Method: Composition-based stats.
Identities = 32/283 (11%), Positives = 71/283 (25%), Gaps = 45/283 (15%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKF-----------GDTHLLTTATLEEKVPMW 50
R+ GR ++ R ++L V+ A GS V G T ++ LE +
Sbjct: 353 RIDGRALDEYRIVALETGVAPLANGSARVSIGGRTSVEGNGGGGTEVVAATKLEVESVDE 412
Query: 51 IRNTKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRA--LRSVVDLSALG 108
G + ++P + + V G ++ + RA + V + +
Sbjct: 413 GEGVDGGRVNLT--IVPGRKAWCMHLDLVVLADQGNVLDVLFLAARAAVWDTRVPRTKVV 470
Query: 109 SRQIII------------DCDVIQADGGTRTAAI--TGAWVALHDCLQHMEDCSNKFQLS 154
+ D + + T + D Q + +
Sbjct: 471 EWKARPMGGAVVGGGAAKDVGGKEKGKDADRMDVDDTEQPTSGFDTRQLNKAVDFELPDY 530
Query: 155 QVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAER------ 208
+ +C + + + V I + +
Sbjct: 531 WDEGEPLEGSEKWPVCVTLNLVPPIHFLDASSREESAVPLKFLLIYSFEKDGKGDKTERP 590
Query: 209 ----------ATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
+ M+ K + K +++E
Sbjct: 591 VLRGMRFIGPGEVKAEEVKGMVESGKKYAQETFKALNQKLASE 633
>gi|320586226|gb|EFW98905.1| 3 exoribonuclease family protein [Grosmannia clavigera kw1407]
Length = 644
Score = 59.1 bits (141), Expect = 5e-07, Method: Composition-based stats.
Identities = 12/47 (25%), Positives = 18/47 (38%), Gaps = 1/47 (2%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGD-THLLTTATLEEK 46
+R GR Q R + + A GS V F D T + + +
Sbjct: 272 IRPDGRSPTQFRPLRAETGMLPGANGSARVCFSDGTEAIVGVKADVE 318
>gi|47208254|emb|CAF93061.1| unnamed protein product [Tetraodon nigroviridis]
Length = 75
Score = 59.1 bits (141), Expect = 5e-07, Method: Composition-based stats.
Identities = 12/46 (26%), Positives = 18/46 (39%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEK 46
+R+ GR R + + V +GS V G T +L E
Sbjct: 22 LRVDGRGCEDYRHMEIETDVVSNTDGSAKVTLGHTVVLVGIKTEIG 67
>gi|255086427|ref|XP_002509180.1| predicted protein [Micromonas sp. RCC299]
gi|226524458|gb|ACO70438.1| predicted protein [Micromonas sp. RCC299]
Length = 243
Score = 59.1 bits (141), Expect = 5e-07, Method: Composition-based stats.
Identities = 16/71 (22%), Positives = 27/71 (38%), Gaps = 6/71 (8%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKF----GDTH-LLTTATLEEKVPMWIRNTK 55
+R GR R+I++ V + GS V+ G+T ++ + P N
Sbjct: 19 LRNDGRGRLDYRQITIDLGVVPQSSGSARVRLGIIPGETTDVIVAVKADIGTPP-KDNPT 77
Query: 56 HGWITAEYGML 66
HG I +
Sbjct: 78 HGRIQCAVELS 88
>gi|296804100|ref|XP_002842902.1| 3' exoribonuclease family protein [Arthroderma otae CBS 113480]
gi|238845504|gb|EEQ35166.1| 3' exoribonuclease family protein [Arthroderma otae CBS 113480]
Length = 336
Score = 59.1 bits (141), Expect = 5e-07, Method: Composition-based stats.
Identities = 30/278 (10%), Positives = 70/278 (25%), Gaps = 52/278 (18%)
Query: 6 RQENQMREISLTRRVSKYAEGSCLVKF------GDT---------HLLTTATLEEKVPMW 50
R+ ++R+I L V A GS ++ +T L+ + + +P
Sbjct: 41 RRAKELRKIYLKTGVIPSASGSAYLELHPSNPSANTSLIPPASSLKLICSVNGPKPLPRS 100
Query: 51 IRNTKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSR 110
+ + ++A P + R +++ + ALR +
Sbjct: 101 APFSPNLLLSAHVKFAPFANRRRRAHIRDM-----NERDLGVHLENALRGAIIGDRWPKS 155
Query: 111 QIIIDCDVIQ----------------------ADGGTRTAAITGAWVALHDCLQHMEDCS 148
+ + +++ +T A A+ D
Sbjct: 156 GLDVTVMILEGEDDRWWGDMSTAETVTGSDGWGMMNVLAHCVTVASAAIADARIDCLGLV 215
Query: 149 NKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAER 208
+ V + + + M I E+ +
Sbjct: 216 AGGVAAVVEAPSPREGAAASAQTVVLDPDPSEHVNISSACVVGYMPSLDEITELWLKGDL 275
Query: 209 ATFSQD----------HFFAMLNLAKDRIADLIKLQKD 236
+ S D + AK L++ ++
Sbjct: 276 PSASSDGTYASPNHDVLMDGAIAAAKASHTVLVEAVRE 313
>gi|195143763|ref|XP_002012867.1| GL23700 [Drosophila persimilis]
gi|194101810|gb|EDW23853.1| GL23700 [Drosophila persimilis]
Length = 234
Score = 59.1 bits (141), Expect = 5e-07, Method: Composition-based stats.
Identities = 30/232 (12%), Positives = 73/232 (31%), Gaps = 27/232 (11%)
Query: 9 NQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPR 68
+++RE+ +GS + G T +++ +V + ++ Y
Sbjct: 13 DKLREMQCKFNPLSRCDGSVMYCQGATVVISAVLGPIEVKTQNLSIDGSYLECNY----- 67
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
R K ++ R ++ ++ AL S A ++ + ++ G
Sbjct: 68 ----RPKAGLPQVKERIREAAVRDVLELALLS----EAYPRSKMSLQIQELEDRGSIDAC 119
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+ A +A+ Y + +
Sbjct: 120 ALNSACLAMLIGGLP-----------LKCSFAAVHCIINEQGEYILDPDQRETEHERASF 168
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
+ G+++ VQ + +F F + +L + A++++ + ISN
Sbjct: 169 TFAFDSLEGNLLLVQ---TKGSFKIAEFNDVESLCRSASAEILQFYRTSISN 217
>gi|171689454|ref|XP_001909667.1| hypothetical protein [Podospora anserina S mat+]
gi|170944689|emb|CAP70800.1| unnamed protein product [Podospora anserina S mat+]
Length = 376
Score = 59.1 bits (141), Expect = 5e-07, Method: Composition-based stats.
Identities = 12/47 (25%), Positives = 18/47 (38%), Gaps = 1/47 (2%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGD-THLLTTATLEEK 46
+R GR Q R +S + GS + F D T + E +
Sbjct: 27 IRPDGRSPTQYRPLSAETGILPGTNGSARICFADGTEAIVGVKAEVE 73
>gi|254586253|ref|XP_002498694.1| ZYRO0G16412p [Zygosaccharomyces rouxii]
gi|238941588|emb|CAR29761.1| ZYRO0G16412p [Zygosaccharomyces rouxii]
Length = 306
Score = 59.1 bits (141), Expect = 5e-07, Method: Composition-based stats.
Identities = 23/212 (10%), Positives = 60/212 (28%), Gaps = 5/212 (2%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+RL GR +Q R++ + G V G T + + + P + G
Sbjct: 23 LRLDGRSFDQFRDVDIKFG---KEYGDVTVTMGKTKIHCRISCQIAQP-YEDRPFEGLFL 78
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
P + + + + I++ + R+ V+ + +
Sbjct: 79 ISTETSPMAGPQFENGNSTGEDEVLCVRIIEKAVRRSGALDVEGLCIVAGSKCWAIRADV 138
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISC-GMLCGYPIVDLDY 179
+ + +A+ L H + +V + + + + +
Sbjct: 139 HFLDCDGGLLDASCIAVMTALLHFKKPDITVLGDRVTVHPTDEREPVPLGILHIPICVTF 198
Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATF 211
+ D + N + I + + +
Sbjct: 199 SFFNPQDTEENIKGDSNAEIAIIDANLKEELL 230
>gi|221060204|ref|XP_002260747.1| exosome complex exonuclease rrp41 homolog [Plasmodium knowlesi
strain H]
gi|193810821|emb|CAQ42719.1| exosome complex exonuclease rrp41 homolog,putative [Plasmodium
knowlesi strain H]
Length = 246
Score = 59.1 bits (141), Expect = 5e-07, Method: Composition-based stats.
Identities = 43/242 (17%), Positives = 84/242 (34%), Gaps = 25/242 (10%)
Query: 2 RLSGRQENQMREISLTRR---VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW 58
RL GR+E++ R I + + A+G + G+T LL+ ++
Sbjct: 13 RLDGRKEDECRLIKINVGNENIFTDADGFAFYEIGNTKLLSYIQGPTELKKSEE---KCS 69
Query: 59 ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDV 118
I E + P + + K++ + EI I +++ L + +I I +
Sbjct: 70 IKCEVFLSPFNVYEKKKKKTKDS----VTNEISAYIRNICENIILLDLYKNSEINIFLYI 125
Query: 119 IQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLD 178
I+ DGG + AAI +AL D ++ ++ +
Sbjct: 126 IERDGGVKHAAINTCILALIDAGIAIK-----------YFISACSVLYLQNRILVDGNQL 174
Query: 179 YGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
++ + I+ ++ AE D F AM+ D +L + K +
Sbjct: 175 EINSGAPELTMVIELNTH-KIILLEFDAE---VPIDIFEAMVRTCMDCCVNLGNVMKLTV 230
Query: 239 SN 240
Sbjct: 231 KE 232
>gi|62734004|gb|AAX96113.1| expressed protein [Oryza sativa Japonica Group]
Length = 165
Score = 59.1 bits (141), Expect = 5e-07, Method: Composition-based stats.
Identities = 25/123 (20%), Positives = 40/123 (32%), Gaps = 6/123 (4%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+R R+ + R ++ A GS LV+ GDT +L + LE P G I
Sbjct: 39 VRPDARRPAEARPTTVALAAVSSAHGSALVRLGDTAMLASIKLEVMSPSG-EAPDEGSIA 97
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
E+ M P + GR + I + + L + R +
Sbjct: 98 VEFHMPPICSP-----LVRPGRPAEVAPVISKNLEDILMRYIVPCCCSIRHVPCPLTEWA 152
Query: 121 ADG 123
Sbjct: 153 YHC 155
>gi|328862357|gb|EGG11458.1| hypothetical protein MELLADRAFT_70820 [Melampsora larici-populina
98AG31]
Length = 292
Score = 59.1 bits (141), Expect = 6e-07, Method: Composition-based stats.
Identities = 36/208 (17%), Positives = 60/208 (28%), Gaps = 10/208 (4%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+R S R Q+R I + + GS LV G+T +L E P ++ N G+I
Sbjct: 51 IRSSVR---QIRLIKINNNSISTSNGSSLVSIGNTSVLCGIRFEVSEPNFM-NPNQGYII 106
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGS---RQIIIDCD 117
+ + + Q +Q + + L I ID
Sbjct: 107 PNIEIGSLCSSKFKPNQINEQSQTILTQLKMILKSSEIIEPSSLVIQPEKLVWVIYIDVI 166
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCS---NKFQLSQVLKGHVAAISCGMLCGYPI 174
+ DG A+I AL + + N+ L I
Sbjct: 167 CLSNDGNVLDASIISITQALQTAKRPQVEFDIETNEVILLDPNFFEPIPIPLNHTIHPFT 226
Query: 175 VDLDYGEDSTIDVDANFVMTDSGHIVEV 202
+ + +D G + V
Sbjct: 227 FSIFEKREWLVDPTLFEEDHSKGSVTVV 254
>gi|322709846|gb|EFZ01421.1| 3' exoribonuclease family protein (Rrp42), putative [Metarhizium
anisopliae ARSEF 23]
Length = 330
Score = 59.1 bits (141), Expect = 6e-07, Method: Composition-based stats.
Identities = 14/54 (25%), Positives = 21/54 (38%), Gaps = 1/54 (1%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGD-THLLTTATLEEKVPMWIRN 53
+R GR Q R ++ + GS V F D T + E + IR+
Sbjct: 26 IRPDGRSSTQFRPLTAETGILPGTNGSARVCFSDGTEAIVGVKAEIEKTPGIRD 79
>gi|322795793|gb|EFZ18472.1| hypothetical protein SINV_11798 [Solenopsis invicta]
Length = 220
Score = 59.1 bits (141), Expect = 6e-07, Method: Composition-based stats.
Identities = 33/228 (14%), Positives = 67/228 (29%), Gaps = 28/228 (12%)
Query: 11 MREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRST 70
+R I+ + ++GS + GDT ++ + I Y
Sbjct: 12 LRPINCEINLLSRSDGSTMFMQGDTTIIVGVNGPLETRSQKMAYDRASIEVTY------- 64
Query: 71 GNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAI 130
+ G + I+ I S + +S + + I+ +Q GG AI
Sbjct: 65 ------TPLKGPAKIDDRLIETYIKETCESAILVSFHPNTMVCINLQEMQDSGGLLACAI 118
Query: 131 TGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDAN 190
+ +AL + + G I+D D + +
Sbjct: 119 NASCLALINSGLS-----------LKFTIAAVSCMIEKETGQVIIDPDSSQLQNAKAEFT 167
Query: 191 FVMTD-SGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
+ + +V FSQ F A ++ + + ++V
Sbjct: 168 YAFDSINKDLVCCHSVGR---FSQSEFLASVDKCRQVSKYVFDYYREV 212
>gi|156102006|ref|XP_001616696.1| exosome complex exonuclease rrp41 [Plasmodium vivax SaI-1]
gi|148805570|gb|EDL46969.1| exosome complex exonuclease rrp41, putative [Plasmodium vivax]
Length = 246
Score = 58.7 bits (140), Expect = 6e-07, Method: Composition-based stats.
Identities = 44/242 (18%), Positives = 84/242 (34%), Gaps = 25/242 (10%)
Query: 2 RLSGRQENQMREISLTRR---VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW 58
RL GR+E++ R I + + A+G + G+T LL+ ++
Sbjct: 13 RLDGRKEDECRLIKINVGNENIFTDADGFAFYEIGNTKLLSYIQGPTELKKSEE---KCS 69
Query: 59 ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDV 118
I E + P + + K++ + EI I +++ L + +I I +
Sbjct: 70 IKCEVFLSPFNVYEKKKKKTKDS----VTNEISAYIRNICENIILLDLYKNSEINIFLYI 125
Query: 119 IQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLD 178
I+ DGG + AAI +AL D ++ ++ +
Sbjct: 126 IERDGGVKHAAINTCILALIDAGIAIK-----------YFISACSVLFLQNRILVDGNQL 174
Query: 179 YGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
++ + IV ++ AE D F AM+ D +L + K +
Sbjct: 175 EINSGAPELTMVIELNTH-KIVLLEFDAE---VPIDIFEAMVRTCMDCCINLGNVMKLTV 230
Query: 239 SN 240
Sbjct: 231 KE 232
>gi|148679539|gb|EDL11486.1| mCG3764 [Mus musculus]
Length = 253
Score = 58.7 bits (140), Expect = 6e-07, Method: Composition-based stats.
Identities = 37/245 (15%), Positives = 75/245 (30%), Gaps = 47/245 (19%)
Query: 6 RQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK---------- 55
R ++R + + A+GS ++ G T +L + + R +
Sbjct: 31 RDPTRLRPVYARAGLLSQAKGSAYLEAGGTKVLCAVSGPRQAEGGERGSGPAGAGGEAPA 90
Query: 56 --HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQII 113
G + ++ P S R + GG +E+ + AL V L Q+
Sbjct: 91 ALRGRLLCDFRRAPFSGRRRRAPQGG----GGEDRELGLALQEALEPAVRLGRYPRAQLE 146
Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP 173
+ +++ G AA+T A +AL D M D + ++
Sbjct: 147 VSALLLEDGGCALAAALTAAALALADAGVEMYDSGGGLR---PEPHPGITVA-------- 195
Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
+M + + GS E + + + L + L +
Sbjct: 196 ------------------LMPVLNQVAGLLGSGEGG--QTESWTDAVRLGLEGCQRLYPV 235
Query: 234 QKDVI 238
+ +
Sbjct: 236 LQQCL 240
>gi|242793419|ref|XP_002482157.1| 3' exoribonuclease family protein [Talaromyces stipitatus ATCC
10500]
gi|218718745|gb|EED18165.1| 3' exoribonuclease family protein [Talaromyces stipitatus ATCC
10500]
Length = 339
Score = 58.7 bits (140), Expect = 6e-07, Method: Composition-based stats.
Identities = 32/276 (11%), Positives = 66/276 (23%), Gaps = 45/276 (16%)
Query: 6 RQENQMREISLTRRVSKYAEGSCLVKFG------DT-----------HLLTTATLEEKVP 48
R+ ++R+I L + A GS ++ +T + +P
Sbjct: 38 RKPTELRKIFLKTGLIPSASGSSYLEIEPARRPTNTRESLIAPATSLKIACAVHGPRPLP 97
Query: 49 MWIRNTKHGWITAEYGMLPRSTGNRVKR-EAVSGRQGGRSQEIQRMI--------GRALR 99
+ + +T P + R S R G E AL
Sbjct: 98 RSANYSPNLLLTTHVKYAPFAHRRRKGHIRDASERDLGVHLETAIRGAIIAERWPKSALD 157
Query: 100 SVVDLSALGSRQIIIDCDVIQA----DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQ 155
+ + + D IT A A+ D D +
Sbjct: 158 VTITVLEAEDDRWWGDASGSSDASWGMMNVLAGCITAAAAAIADARIDCLDLVAGGVAAL 217
Query: 156 VLKGHVAAISCGMLCGYPIV---DLDYGEDSTIDVDANFVMTDSGHIVEVQGSA------ 206
V + S P + + + + I E+
Sbjct: 218 VTEDEDETDSTNSGSRPPRLLLDPDPAEHQNIVAACVVGYLPSRDEITEIWLKGDTSEVA 277
Query: 207 ------ERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
++ + ++ A+ + L ++
Sbjct: 278 STTPGSKKVPGHEVLLDGAIDAARAARSVLAAAVRE 313
>gi|84043476|ref|XP_951528.1| ribosomal RNA processing protein 41B [Trypanosoma brucei TREU927]
gi|14250914|emb|CAC39262.1| Rrp41p homologue [Trypanosoma brucei]
gi|33348349|gb|AAQ15675.1| ribosomal RNA processing protein 41B [Trypanosoma brucei brucei
strain 927/4 GUTat10.1]
gi|62358716|gb|AAX79172.1| ribosomal RNA processing protein 41B [Trypanosoma brucei]
Length = 256
Score = 58.7 bits (140), Expect = 6e-07, Method: Composition-based stats.
Identities = 35/242 (14%), Positives = 57/242 (23%), Gaps = 14/242 (5%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R GR +MR L +GS G T + N +
Sbjct: 6 RRDGRTAREMRGKELRTSDLSQFDGSAWYSQGLTAVTVAINGP--TAARQENYRRCTTCI 63
Query: 62 EYGMLPRSTGN----RVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
R R+ R+ E+++ + + ++V L +
Sbjct: 64 HVNRAARIPQEGGTGRLIMMERRERERCEDGELKQFLTSLVEAIVCLDRFPRCVLEAHVT 123
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDC--SNKFQLSQVLKGHVAAISCGMLCGYPIV 175
V+ DG A AL D + + L +
Sbjct: 124 VLMDDGALFAVASNAIMCALLDAGVPCRSTIAAVSLIMCNPEASGNEGEPEIFLDPTAVE 183
Query: 176 DLDYGEDSTIDVDANFVMTDSGHIVE--VQG----SAERATFSQDHFFAMLNLAKDRIAD 229
+ S T ++ VQ SA + M LA
Sbjct: 184 ESTDEVRSYASATFVLTNTGGEAVLASRVQARPRSSAYSRPITPKDLSRMFALAAKAAET 243
Query: 230 LI 231
L
Sbjct: 244 LF 245
>gi|62867371|dbj|BAD95986.1| polyribonucleotide nuculeotidyltransferase [Campylobacter lari]
Length = 243
Score = 58.7 bits (140), Expect = 6e-07, Method: Composition-based stats.
Identities = 17/98 (17%), Positives = 30/98 (30%), Gaps = 10/98 (10%)
Query: 140 CLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHI 199
E + V + AI ++ ED D+D + G I
Sbjct: 1 AGIKSEKLVAGVAMGLVFEDEKYAILTDIM---------GLEDHDGDMDFKVAGSYEG-I 50
Query: 200 VEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
+Q + Q L AK+ ++KL ++
Sbjct: 51 TALQMDIKLGGIEQQVLKEALYQAKEAREHILKLMEEA 88
>gi|62733253|gb|AAX95370.1| 3' exoribonuclease family, domain 1, putative [Oryza sativa
Japonica Group]
Length = 185
Score = 58.7 bits (140), Expect = 7e-07, Method: Composition-based stats.
Identities = 20/83 (24%), Positives = 30/83 (36%), Gaps = 1/83 (1%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+R R+ + R ++ A GS LV+ GDT +L + LE P G I
Sbjct: 39 VRPDARRPAEARPTTVALAAVSSAHGSALVRLGDTAMLASIKLEVMSPSG-EAPDEGSIA 97
Query: 61 AEYGMLPRSTGNRVKREAVSGRQ 83
E+ M P +
Sbjct: 98 VEFHMPPICSPLVRPGRPAEVAP 120
>gi|121715958|ref|XP_001275588.1| 3' exoribonuclease family protein (Rrp42), putative [Aspergillus
clavatus NRRL 1]
gi|119403745|gb|EAW14162.1| 3' exoribonuclease family protein (Rrp42), putative [Aspergillus
clavatus NRRL 1]
Length = 391
Score = 58.7 bits (140), Expect = 7e-07, Method: Composition-based stats.
Identities = 13/47 (27%), Positives = 18/47 (38%), Gaps = 1/47 (2%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGD-THLLTTATLEEK 46
+R GR Q R +S + GS V F D T + E +
Sbjct: 35 IRPDGRSSTQFRPLSAETDILPGTNGSARVGFADGTQAIVGVKAEVE 81
>gi|296231558|ref|XP_002761078.1| PREDICTED: exosome complex exonuclease MTR3-like [Callithrix
jacchus]
Length = 271
Score = 58.7 bits (140), Expect = 7e-07, Method: Composition-based stats.
Identities = 37/245 (15%), Positives = 76/245 (31%), Gaps = 28/245 (11%)
Query: 6 RQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK---------- 55
R ++R + + A+GS ++ G T +L + + R
Sbjct: 31 RDPTRLRPVYARAGLLSQAKGSAYLEAGGTKVLCAVSGPRQAEGGERGGGPAGAGGEAPA 90
Query: 56 --HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQII 113
G + ++ P + R + GG +E+ + AL V L Q+
Sbjct: 91 ALRGRLLCDFRRAPFAGRRRRAPQG-----GGEERELALALQEALEPAVRLGRYPRAQLE 145
Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP 173
+ +++ G AA+T A +AL D M D LS
Sbjct: 146 VSALLLEDGGSALAAALTAAALALADAGVEMYDLVVGCGLSL----------APGPASTW 195
Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
++D E+ + + V + ++ + + L + L +
Sbjct: 196 LLDPTRLEEERAAAGLTVALMPVLNQVAGLLGSGEGGLTES-WAEAVRLGLEGCQRLYPV 254
Query: 234 QKDVI 238
+ +
Sbjct: 255 LQQCL 259
>gi|296812517|ref|XP_002846596.1| exosome complex exonuclease RRP42 [Arthroderma otae CBS 113480]
gi|238841852|gb|EEQ31514.1| exosome complex exonuclease RRP42 [Arthroderma otae CBS 113480]
Length = 376
Score = 58.7 bits (140), Expect = 7e-07, Method: Composition-based stats.
Identities = 12/47 (25%), Positives = 19/47 (40%), Gaps = 1/47 (2%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGD-THLLTTATLEEK 46
+R GR Q R ++ + A GS + F D T + E +
Sbjct: 34 IRPDGRSATQFRPLAAETNIVPNAYGSARIGFADGTQAIVGVKAEVE 80
>gi|320033639|gb|EFW15586.1| exosome complex endonuclease 2/ribosomal RNA processing protein
[Coccidioides posadasii str. Silveira]
Length = 265
Score = 58.7 bits (140), Expect = 7e-07, Method: Composition-based stats.
Identities = 36/225 (16%), Positives = 76/225 (33%), Gaps = 24/225 (10%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+RL GR +Q R ++LT G V+ G T ++ + E P R++ G T
Sbjct: 23 VRLDGRALDQFRPLNLTFG---DEYGHVKVQLGRTSVIVRISAEVTAPRPERDSD-GIFT 78
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
+ + + GR +++ + R L +V R +D + +
Sbjct: 79 VSIELNDMALPGF---------ETGRQSDLETQLSRTLDKIV------RRSNALDTESLC 123
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLS--QVLKGHVAAISCGMLCGYPIVD-- 176
G + + D + D ++ + + +S G + Y +
Sbjct: 124 IAKGLSCWNVRADVH-IVDADGGLVDICCLAIMAGLLHFRIPESTVSDGKVTVYSPEEKV 182
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLN 221
+ + + F + D G I + ++ S+ L+
Sbjct: 183 PVPLNLTKVPLSITFNLYDEGKITLMDATSSEEAVSEGAVIIALD 227
>gi|170582819|ref|XP_001896302.1| 3' exoribonuclease family, domain 1 containing protein [Brugia
malayi]
gi|158596526|gb|EDP34857.1| 3' exoribonuclease family, domain 1 containing protein [Brugia
malayi]
Length = 277
Score = 58.7 bits (140), Expect = 7e-07, Method: Composition-based stats.
Identities = 41/241 (17%), Positives = 81/241 (33%), Gaps = 10/241 (4%)
Query: 4 SGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEY 63
G +N R I + V +G+ V+FG T ++ + +++ +
Sbjct: 44 DG--QNTFRSIVMQTGVLHDQKGTVYVEFGSTKIICSVDGPKEITKSADVDPTEGQIYVF 101
Query: 64 GMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADG 123
+ N + S I+ I ALRS+V L QI ++ V+ DG
Sbjct: 102 LKNISAESNSLSGSNSFSASNKESNRIRNAIESALRSIVCLELFCKAQIDVEITVLNDDG 161
Query: 124 GTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDS 183
G A++ + +AL D + D V+ I + +P+ + ED
Sbjct: 162 GVLAASLIASSLALIDSGIQVYDVC--VAAHIVMLTDGRIIVDPSISSFPLSSIPDSEDF 219
Query: 184 TIDVDANFV---MTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
+ + M + + + +A + L L + ++N
Sbjct: 220 PRNAHLSVTVGIMPSLNQLTCCEFVGIAEP---HQLRHAIAVAVENSLKLYPLVRKTLTN 276
Query: 241 E 241
+
Sbjct: 277 K 277
>gi|85113698|ref|XP_964565.1| hypothetical protein NCU03159 [Neurospora crassa OR74A]
gi|28926352|gb|EAA35329.1| conserved hypothetical protein [Neurospora crassa OR74A]
Length = 357
Score = 58.7 bits (140), Expect = 7e-07, Method: Composition-based stats.
Identities = 13/43 (30%), Positives = 22/43 (51%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE 44
R +GR ++ R + + +A GS LV+ GDT ++ E
Sbjct: 38 RTNGRAPHEARPVHIHTSSLAHANGSALVRTGDTTVVCGVRAE 80
>gi|309363703|emb|CAP26025.2| CBR-EXOS-7 protein [Caenorhabditis briggsae AF16]
Length = 307
Score = 58.3 bits (139), Expect = 8e-07, Method: Composition-based stats.
Identities = 34/278 (12%), Positives = 66/278 (23%), Gaps = 39/278 (14%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTH-LLTTATLE-EKVPMWIRNTKHGW 58
+R GR R I L R V GSC V+ G T +L LE E
Sbjct: 21 IRNDGRTCADFRTIVLERGVLSGTNGSCRVQLGQTTDVLAGIKLELESFDPAAEKEAKQP 80
Query: 59 ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALR-------SVVDLSALGSRQ 111
++ ++ + + S Q R+L +++
Sbjct: 81 MSFHVDFSANASSQFAGKGGDQYGE-EISAAFQVAFSRSLDILPNLSKTLLAEGYRWKIN 139
Query: 112 IIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAA-------- 163
+ + + ++ + + + ++S VLK
Sbjct: 140 VDLSVLQWAGSVPDACSLAIIGALSDLEVPEVEVAPDDGGKVSIVLKRPRTGGNMRDEEV 199
Query: 164 -----------------ISCGMLCGYPIVDLDYGEDSTIDVDANFVMT---DSGHIVEVQ 203
+S + + D I ++
Sbjct: 200 PVAMWKLDVQSCPMLLTVSKIGSANLVDCSPEEECCIRSQLLIGVAKNLNVDDYDITCIK 259
Query: 204 GSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
+ M LA L + + + E
Sbjct: 260 QHG-GGLLEMESIQDMTELASKTAGGLYQAIEKRLKTE 296
>gi|240278204|gb|EER41711.1| conserved hypothetical protein [Ajellomyces capsulatus H143]
Length = 129
Score = 58.3 bits (139), Expect = 8e-07, Method: Composition-based stats.
Identities = 12/48 (25%), Positives = 19/48 (39%), Gaps = 1/48 (2%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGD-THLLTTATLEEKV 47
+R GR Q R ++ + A GS + F D T + E +
Sbjct: 35 IRTDGRAATQFRPLTAETDILPGANGSARIGFADGTQAIVGVKAEVER 82
>gi|309266685|ref|XP_001481151.2| PREDICTED: exosome complex component rrp43-like [Mus musculus]
Length = 418
Score = 58.3 bits (139), Expect = 8e-07, Method: Composition-based stats.
Identities = 13/43 (30%), Positives = 22/43 (51%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE 44
R +GR ++ R + + +A GS LV+ GDT ++ E
Sbjct: 99 RTNGRAPHEARPVHIHTSSLAHANGSALVRTGDTTVVCGVRAE 141
>gi|312377314|gb|EFR24174.1| hypothetical protein AND_11431 [Anopheles darlingi]
Length = 269
Score = 58.3 bits (139), Expect = 8e-07, Method: Composition-based stats.
Identities = 24/227 (10%), Positives = 68/227 (29%), Gaps = 27/227 (11%)
Query: 11 MREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRST 70
+R + + ++ S + G T ++ +A +V + +++ + +Y
Sbjct: 7 LRRMICETNILSRSDCSAALSQGATQVMVSANGPAEVKLRNAESENAHLEVQYRSNAGL- 65
Query: 71 GNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAI 130
+ +++ ++ +I R+ VV +A + + + GG I
Sbjct: 66 ------------EDIQNRLVESLIKRSFVRVVASTAFPRSAVYVFVQEMTDKGGLLACCI 113
Query: 131 TGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDAN 190
+AL E + ++ I + +
Sbjct: 114 NATCLALITGGI--ELNFTVAAVHCIIDEDGNMILDPDSKQMKLARSSFTFVYDSIAKNT 171
Query: 191 FVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
G +F+ D + + ++ K+ + + + V
Sbjct: 172 VTSYVYG------------SFTFDEYERVASVCKEAVDKIFNFYRKV 206
>gi|308800668|ref|XP_003075115.1| putative exonuclease RRP41 (ISS) [Ostreococcus tauri]
gi|116061669|emb|CAL52387.1| putative exonuclease RRP41 (ISS) [Ostreococcus tauri]
Length = 321
Score = 58.3 bits (139), Expect = 8e-07, Method: Composition-based stats.
Identities = 40/237 (16%), Positives = 81/237 (34%), Gaps = 10/237 (4%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+RL GR+ N++R + +GS + G+T + +
Sbjct: 60 LRLDGRRANEIRRPRHAFAIDAQCDGSARFELGNTVIECRVDGPSERKFGGAEEG-ASEA 118
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
+ + GRS++ + ++ +AL S V + + ++ + V+
Sbjct: 119 CALTCSHGRSAFASDGVQAGRKGDGRSKQFESVLAKALTSAVCVDLMPRCEVQVRTTVLC 178
Query: 121 ADGGTRTAAITGAWVALHDCLQH--------MEDCSNKFQLSQVLKGHVAAISCGML-CG 171
DGG R A+ A +AL D + L V + + C
Sbjct: 179 DDGGARAASACAAVLALADAGIPLKGIIGSCTVGHLDGEALIDVNRDEERGRGPELWTCA 238
Query: 172 YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIA 228
D+ +++ D + + + HI + ER + + F +M +LA
Sbjct: 239 LSAGDVPDDDENEDDGEDHLMGATGNHITVIVEELERGKTTMETFKSMHDLALAGCE 295
>gi|71020931|ref|XP_760696.1| hypothetical protein UM04549.1 [Ustilago maydis 521]
gi|46100124|gb|EAK85357.1| hypothetical protein UM04549.1 [Ustilago maydis 521]
Length = 297
Score = 58.3 bits (139), Expect = 8e-07, Method: Composition-based stats.
Identities = 16/67 (23%), Positives = 25/67 (37%), Gaps = 1/67 (1%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R R +Q+R I L + A GS V+ GD L + +V + + +
Sbjct: 38 RPDQRSYSQLRPIFLQTHLVPSASGSSYVEIGDLKLACSVFGPRQVK-GRQYSGKAELNV 96
Query: 62 EYGMLPR 68
E P
Sbjct: 97 EVKFAPF 103
>gi|239636248|ref|ZP_04677250.1| polyribonucleotide nucleotidyltransferase [Staphylococcus warneri
L37603]
gi|239597603|gb|EEQ80098.1| polyribonucleotide nucleotidyltransferase [Staphylococcus warneri
L37603]
Length = 89
Score = 58.3 bits (139), Expect = 8e-07, Method: Composition-based stats.
Identities = 15/65 (23%), Positives = 30/65 (46%), Gaps = 4/65 (6%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKV---PMWIRNTKHGWITAEYGMLP 67
R +++ ++K A G+ LV++GDT +L+TAT ++ + + G +P
Sbjct: 15 RSLTIETGQLAKQANGAVLVRYGDTVVLSTATASKEPRDGDFFPLTVNYEEKMYAAGKIP 74
Query: 68 RSTGN 72
Sbjct: 75 GGFKK 79
>gi|308473330|ref|XP_003098890.1| hypothetical protein CRE_31358 [Caenorhabditis remanei]
gi|308268029|gb|EFP11982.1| hypothetical protein CRE_31358 [Caenorhabditis remanei]
Length = 214
Score = 58.3 bits (139), Expect = 8e-07, Method: Composition-based stats.
Identities = 39/237 (16%), Positives = 63/237 (26%), Gaps = 31/237 (13%)
Query: 5 GRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYG 64
GR +RE+ K A+GS G T + + + N + + Y
Sbjct: 3 GR----LREMRCELSFLKNADGSACFSQGSTCIWASCSGPGDGHASKANEEAMTLDISY- 57
Query: 65 MLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGG 124
+ + + IQ I +A+ I + IQ DG
Sbjct: 58 ----------RANCGDNKFSVLNNIIQSTISKAINL----ELFPHTTIAVTIHGIQDDGS 103
Query: 125 TRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDST 184
AI GA AL D E + ST
Sbjct: 104 IGAVAINGACFALLDNGMPFEAVFCGVL-----------VVRLKDELIIDPTTKQEASST 152
Query: 185 IDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
V GH A + + A +LA+ + + + V+ +
Sbjct: 153 GRVLFAVCNGADGHPEVCSMDA-IGQWDFNQLEAAWSLAQPSATAIFEFYRSVMQRK 208
>gi|298711453|emb|CBJ32592.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 239
Score = 58.3 bits (139), Expect = 8e-07, Method: Composition-based stats.
Identities = 30/156 (19%), Positives = 51/156 (32%), Gaps = 6/156 (3%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKF--GDTHLLTTATLEEKVPMWIRNTKHGW 58
MR GR R +S+ V + GS V T +L +E P + G
Sbjct: 27 MRGDGRGRLDYRSLSVQAGVLAQSNGSARVTIAHNGTDVLAAVKVEVGEP-GLEAPGAGR 85
Query: 59 ITAEYGML---PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115
+ R + + G + +Q + G L ++ + + +D
Sbjct: 86 VEVCVSCSNSLFPKFDERSSGDVNAVLSGALERSMQGVGGLDLDALGIVDGKFCWVVFVD 145
Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKF 151
V+QADG A+ A+ AL+
Sbjct: 146 ILVLQADGNLLDASSFAAYTALNTARIPKVTPLVGE 181
>gi|148927324|ref|ZP_01810889.1| Polyribonucleotide nucleotidyltransferase [candidate division TM7
genomosp. GTL1]
gi|147887280|gb|EDK72739.1| Polyribonucleotide nucleotidyltransferase [candidate division TM7
genomosp. GTL1]
Length = 264
Score = 58.3 bits (139), Expect = 8e-07, Method: Composition-based stats.
Identities = 21/122 (17%), Positives = 43/122 (35%), Gaps = 9/122 (7%)
Query: 119 IQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLD 178
+ ++G T A++ +++ D ++ + + + G + D+
Sbjct: 1 MSSNGSTSMASVCSGILSMMDAGVPIKAPVSGIAMGL--------ATDGNGKAIILSDIQ 52
Query: 179 YGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
ED D+D V T G I +Q + S D L AK A +++ +
Sbjct: 53 GIEDFAGDMDFKVVGTTRG-ITALQMDIKVKGISPDLMAKALQQAKTGRAKILEHMLSTL 111
Query: 239 SN 240
Sbjct: 112 PE 113
>gi|255718091|ref|XP_002555326.1| KLTH0G06644p [Lachancea thermotolerans]
gi|238936710|emb|CAR24889.1| KLTH0G06644p [Lachancea thermotolerans]
Length = 305
Score = 58.3 bits (139), Expect = 9e-07, Method: Composition-based stats.
Identities = 25/212 (11%), Positives = 59/212 (27%), Gaps = 5/212 (2%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+RL R+ ++ R + + G V G T + + P + G
Sbjct: 23 LRLDSRKFDEFRSVEIELGDD---YGDVTVTMGKTKVHCRISCTITQP-YEDRPFEGLFF 78
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
P + + S+ I++ + R+ V+ + +
Sbjct: 79 ISTETSPMAGPQFENGNNTGEDEVLCSRIIEKAVRRSGALDVEGLCIVAGSKCWAVRADV 138
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISC-GMLCGYPIVDLDY 179
I + +A+ L H + QV V + + + + +
Sbjct: 139 HFLNCDGGFIDASCIAVMVGLLHFKKPDVSVSGEQVTIHPVDEREPVPLGVLHVPICVSF 198
Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATF 211
+ D + N + I + + +
Sbjct: 199 SFFNPEDAEENIKGESNSEICIIDATLKEELL 230
>gi|308486185|ref|XP_003105290.1| CRE-EXOS-7 protein [Caenorhabditis remanei]
gi|308256798|gb|EFP00751.1| CRE-EXOS-7 protein [Caenorhabditis remanei]
Length = 314
Score = 58.3 bits (139), Expect = 9e-07, Method: Composition-based stats.
Identities = 17/75 (22%), Positives = 25/75 (33%), Gaps = 2/75 (2%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTH-LLTTATLE-EKVPMWIRNTKHGW 58
+R GR R + L R V GSC V+ G T +L LE E
Sbjct: 21 IRNDGRACADFRPMILERGVLSGTNGSCRVQLGQTTDVLAGIKLELEAYDPIAEKQPKQP 80
Query: 59 ITAEYGMLPRSTGNR 73
++ ++
Sbjct: 81 MSFHVDFSANASSQF 95
>gi|295667607|ref|XP_002794353.1| 3' exoribonuclease family protein [Paracoccidioides brasiliensis
Pb01]
gi|226286459|gb|EEH42025.1| 3' exoribonuclease family protein [Paracoccidioides brasiliensis
Pb01]
Length = 350
Score = 58.3 bits (139), Expect = 9e-07, Method: Composition-based stats.
Identities = 37/293 (12%), Positives = 82/293 (27%), Gaps = 64/293 (21%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLL------------------TTAT 42
+R R+ +++R+I L + A GS ++F + +L T
Sbjct: 38 IRS--RKPDELRKIFLKTGLIPSASGSAYLEFQTSTILPRSKLKTLIPPSSSLKLTCTVH 95
Query: 43 LEEKVPMWIRNTKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVV 102
+ +P + + ++ P +T R +++ + AL+ V+
Sbjct: 96 GPKPLPRSAPFSPNLLLSTHVKFAPFATRRRRSYIR-----DVNERDLGVHLETALKGVI 150
Query: 103 DLSALGSRQIIIDCDVIQAD----------------------GGTRTAAITGAWVALHDC 140
+ I +++ + IT A A+ D
Sbjct: 151 IGERWPKSGLDITVTILEGEDDRWWGDALSSSPFGGIDGWGLMNVLAGCITVASAAIVDA 210
Query: 141 LQHMEDCSNKFQLSQVLKGHVAAI-------SCGMLCGYPIVDLDYGEDSTIDVDANFVM 193
D + V H+ G + M
Sbjct: 211 RIDCVDLITGGVAAFVENPHIEVSGEPEETNEKGRDRRLVLDPDPSEHRGIAAACVVGYM 270
Query: 194 TDSGHIVEV---------QGSAERATFSQDHFFA-MLNLAKDRIADLIKLQKD 236
I E+ G +++ + S + +N A+ A L++ ++
Sbjct: 271 PSRDEITELWLKGDTSDFHGGSQKGSLSHEALIDGAVNAARGTQAVLMEASRE 323
>gi|258565497|ref|XP_002583493.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
gi|237907194|gb|EEP81595.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
Length = 403
Score = 58.3 bits (139), Expect = 9e-07, Method: Composition-based stats.
Identities = 11/48 (22%), Positives = 18/48 (37%), Gaps = 1/48 (2%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGD-THLLTTATLEEKV 47
+R GR Q R ++ + GS + F D T + E +
Sbjct: 34 IRPDGRAATQFRPLTAEADILPNTNGSARIGFADGTQAIVGVKAEVER 81
>gi|323338208|gb|EGA79441.1| Rrp45p [Saccharomyces cerevisiae Vin13]
Length = 305
Score = 58.3 bits (139), Expect = 9e-07, Method: Composition-based stats.
Identities = 30/268 (11%), Positives = 75/268 (27%), Gaps = 33/268 (12%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
RL GR +Q R++ +T G VK G+T + + + P + G
Sbjct: 24 RLDGRSFDQFRDVEITFG---KXFGDVSVKMGNTKVHCRISCQIAQP-YEDRPFEGLFVI 79
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
+ P + + S+ I++ + R+ V+ + +
Sbjct: 80 STEISPMAGSQFENGNITGEDEVLCSRIIEKSVRRSGALDVEGLCIVAGSKCWAVRADVH 139
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISC-GMLCGYPIVDLDYG 180
I + +A+ L H + Q++ V + + + + +
Sbjct: 140 FLDCDGGFIDASCIAVMAGLMHFKKPDITVHGEQIIVHPVNEREPVPLGILHIPICVTFS 199
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGS------------------------AERATFSQDHF 216
+ D + N + I + + ++ D
Sbjct: 200 FFNPQDTEENIKGETNSEISIIDATLKEELLRDGVLTVTLNKNREVVQVSKAGGLPMDAL 259
Query: 217 FAMLNLAKDR---IADLIKLQKDVISNE 241
++ + I + ++ +
Sbjct: 260 -TLMKCCHEAYSIIEKITDQILQLLKED 286
>gi|325096264|gb|EGC49574.1| 3' exoribonuclease [Ajellomyces capsulatus H88]
Length = 421
Score = 58.3 bits (139), Expect = 9e-07, Method: Composition-based stats.
Identities = 12/48 (25%), Positives = 19/48 (39%), Gaps = 1/48 (2%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGD-THLLTTATLEEKV 47
+R GR Q R ++ + A GS + F D T + E +
Sbjct: 35 IRTDGRAATQFRPLTAETDILPGANGSARIGFADGTQAIVGVKAEVER 82
>gi|261326393|emb|CBH09353.1| RNase PH-like protein [Trypanosoma brucei gambiense DAL972]
Length = 256
Score = 58.3 bits (139), Expect = 9e-07, Method: Composition-based stats.
Identities = 35/242 (14%), Positives = 57/242 (23%), Gaps = 14/242 (5%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R GR +MR L +GS G T + N +
Sbjct: 6 RRDGRTAREMRGKELRTSDLSQFDGSAWYSQGLTAVTVAINGP--TAARQENYRRCTTCI 63
Query: 62 EYGMLPRSTGN----RVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
R R+ R+ E+++ + + ++V L +
Sbjct: 64 HVNRAARIPQEGGTGRLIMMERRERERCEDGELKQFLASLVEAIVCLDRFPRCVLEAHVT 123
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDC--SNKFQLSQVLKGHVAAISCGMLCGYPIV 175
V+ DG A AL D + + L +
Sbjct: 124 VLMDDGALFAVASNAIMCALLDAGVPCRSTIAAVSLLMCNPEASGNEGEPEIFLDPTAVE 183
Query: 176 DLDYGEDSTIDVDANFVMTDSGHIVE--VQG----SAERATFSQDHFFAMLNLAKDRIAD 229
+ S T ++ VQ SA + M LA
Sbjct: 184 ESTDEVRSYASATFVLTNTGGEAVLASRVQARPRSSAYSRPITPKDLSRMFALAAKAAET 243
Query: 230 LI 231
L
Sbjct: 244 LF 245
>gi|119181425|ref|XP_001241926.1| hypothetical protein CIMG_05822 [Coccidioides immitis RS]
Length = 410
Score = 58.3 bits (139), Expect = 9e-07, Method: Composition-based stats.
Identities = 14/44 (31%), Positives = 23/44 (52%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE 44
+R++GR E+Q R S+ + GS +V+ GDT + E
Sbjct: 49 IRINGRTESQFRPASVNTGSLSHTNGSAVVRIGDTTAVCGVRGE 92
>gi|332020128|gb|EGI60572.1| Exosome complex exonuclease RRP46 [Acromyrmex echinatior]
Length = 220
Score = 58.3 bits (139), Expect = 1e-06, Method: Composition-based stats.
Identities = 34/228 (14%), Positives = 69/228 (30%), Gaps = 28/228 (12%)
Query: 11 MREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRST 70
+R I+ + ++GS + GDT ++ + I Y
Sbjct: 12 LRPINCEINLLSRSDGSTMFMQGDTTIIAGVNGPLEAKSQKMAYDRVSIEVTY------- 64
Query: 71 GNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAI 130
+ G + I+ I S + +S + + I+ +Q GG AI
Sbjct: 65 ------TPLKGPAKVDDRLIETYIKETCESAILVSFHPNTMVCINLQEMQDSGGLLACAI 118
Query: 131 TGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDAN 190
+ +AL + M + G I+D D + +
Sbjct: 119 NASCLALINSGLSMR-----------FTVAAISCMIEKETGDIIMDPDSSQLKNARAEFT 167
Query: 191 FVMTD-SGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
+ + IV + FSQ+ F ++ + + ++V
Sbjct: 168 YAFDSINKDIVCCHSTGR---FSQNEFLTSMDKCRHVSKCVFDYYREV 212
>gi|6320486|ref|NP_010566.1| Rrp45p [Saccharomyces cerevisiae S288c]
gi|14285753|sp|Q05636|RRP45_YEAST RecName: Full=Exosome complex component RRP45; AltName:
Full=Ribosomal RNA-processing protein 45
gi|266618484|pdb|2WP8|A Chain A, Yeast Rrp44 Nuclease
gi|1230649|gb|AAB64446.1| Ydr280wp [Saccharomyces cerevisiae]
gi|45269387|gb|AAS56074.1| YDR280W [Saccharomyces cerevisiae]
gi|151942253|gb|EDN60609.1| 3'-5'-exoribonuclease [Saccharomyces cerevisiae YJM789]
gi|190404776|gb|EDV08043.1| 3'->5' exoribonuclease [Saccharomyces cerevisiae RM11-1a]
gi|256270394|gb|EEU05592.1| Rrp45p [Saccharomyces cerevisiae JAY291]
gi|259145518|emb|CAY78782.1| Rrp45p [Saccharomyces cerevisiae EC1118]
gi|285811296|tpg|DAA12120.1| TPA: Rrp45p [Saccharomyces cerevisiae S288c]
gi|323309622|gb|EGA62830.1| Rrp45p [Saccharomyces cerevisiae FostersO]
gi|323349166|gb|EGA83396.1| Rrp45p [Saccharomyces cerevisiae Lalvin QA23]
Length = 305
Score = 58.3 bits (139), Expect = 1e-06, Method: Composition-based stats.
Identities = 30/268 (11%), Positives = 75/268 (27%), Gaps = 33/268 (12%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
RL GR +Q R++ +T G VK G+T + + + P + G
Sbjct: 24 RLDGRSFDQFRDVEITFG---KEFGDVSVKMGNTKVHCRISCQIAQP-YEDRPFEGLFVI 79
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
+ P + + S+ I++ + R+ V+ + +
Sbjct: 80 STEISPMAGSQFENGNITGEDEVLCSRIIEKSVRRSGALDVEGLCIVAGSKCWAVRADVH 139
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISC-GMLCGYPIVDLDYG 180
I + +A+ L H + Q++ V + + + + +
Sbjct: 140 FLDCDGGFIDASCIAVMAGLMHFKKPDITVHGEQIIVHPVNEREPVPLGILHIPICVTFS 199
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGS------------------------AERATFSQDHF 216
+ D + N + I + + ++ D
Sbjct: 200 FFNPQDTEENIKGETNSEISIIDATLKEELLRDGVLTVTLNKNREVVQVSKAGGLPMDAL 259
Query: 217 FAMLNLAKDR---IADLIKLQKDVISNE 241
++ + I + ++ +
Sbjct: 260 -TLMKCCHEAYSIIEKITDQILQLLKED 286
>gi|225557559|gb|EEH05845.1| conserved hypothetical protein [Ajellomyces capsulatus G186AR]
Length = 425
Score = 57.9 bits (138), Expect = 1e-06, Method: Composition-based stats.
Identities = 12/48 (25%), Positives = 19/48 (39%), Gaps = 1/48 (2%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGD-THLLTTATLEEKV 47
+R GR Q R ++ + A GS + F D T + E +
Sbjct: 35 IRTDGRAATQFRPLTAETDILPGANGSARIGFADGTQAIVGVKAEVER 82
>gi|154274968|ref|XP_001538335.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
gi|150414775|gb|EDN10137.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
Length = 337
Score = 57.9 bits (138), Expect = 1e-06, Method: Composition-based stats.
Identities = 12/45 (26%), Positives = 18/45 (40%), Gaps = 1/45 (2%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGD-THLLTTATLE 44
+R GR Q R ++ + A GS + F D T + E
Sbjct: 35 IRTDGRAATQFRPLTAETDILPGANGSARIGFADGTQAIVGVKAE 79
>gi|125773865|ref|XP_001358191.1| GA17911 [Drosophila pseudoobscura pseudoobscura]
gi|54637926|gb|EAL27328.1| GA17911 [Drosophila pseudoobscura pseudoobscura]
Length = 234
Score = 57.9 bits (138), Expect = 1e-06, Method: Composition-based stats.
Identities = 30/232 (12%), Positives = 74/232 (31%), Gaps = 27/232 (11%)
Query: 9 NQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPR 68
+++RE+ +GS + G T +++ +V + ++ Y
Sbjct: 13 DKLREMQCKFNPLSRCDGSVMYCQGATVVISAVLGPVEVKTQNLSIDGSYLECNY----- 67
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
R K ++ R ++ ++ AL S A ++ + ++ G
Sbjct: 68 ----RPKAGLPQVKERIREAAVRDVLELALLS----EAYPRSKMSLQIQELEDRGSIDAC 119
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+ A +A+ Y + ++
Sbjct: 120 ALNSACLAMLIGGLP-----------LKCSFAAVHCIINEEGDYILDPDQRETENERASF 168
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
+ G+++ VQ + +F F + +L + A++++ + ISN
Sbjct: 169 TFAFDSLEGNLLLVQ---TKGSFKIAEFNDVESLCRSASAEILQFYRTSISN 217
>gi|261190048|ref|XP_002621434.1| exosome complex endonuclease 2/ribosomal RNA processing protein
[Ajellomyces dermatitidis SLH14081]
gi|239591262|gb|EEQ73843.1| exosome complex endonuclease 2/ribosomal RNA processing protein
[Ajellomyces dermatitidis SLH14081]
gi|239606325|gb|EEQ83312.1| exosome complex endonuclease 2/ribosomal RNA processing protein
[Ajellomyces dermatitidis ER-3]
gi|327353102|gb|EGE81959.1| exosome complex exonuclease RRP45 [Ajellomyces dermatitidis ATCC
18188]
Length = 293
Score = 57.9 bits (138), Expect = 1e-06, Method: Composition-based stats.
Identities = 32/223 (14%), Positives = 69/223 (30%), Gaps = 20/223 (8%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+RL GR +Q+R ++++ G ++ G T ++ + E P R +
Sbjct: 23 VRLDGRALDQLRPLTVSFG---DEYGHVKLQLGKTSVVVRISAEVTKPRPERENDGIFTV 79
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
+ S R++ Q R+ + AL + A G
Sbjct: 80 SVELNDMASPAYETGRQSELETQLVRTLDRIIRRSNALDTESLCIAAGK--NCWHVRADV 137
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD--LD 178
+ + +A+ L + A + G + Y +
Sbjct: 138 HVVDSDGGLVDSCCLAIMTGL-------------LHFRLPEAVVRDGRVTVYRPEERVPS 184
Query: 179 YGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLN 221
+ + + F M D G I+ + +++ S+ L+
Sbjct: 185 PLNLTKLPLSTTFNMYDEGRIIVLDATSKEEAVSEGSLIIALD 227
>gi|226291910|gb|EEH47338.1| 3' exoribonuclease family protein [Paracoccidioides brasiliensis
Pb18]
Length = 350
Score = 57.9 bits (138), Expect = 1e-06, Method: Composition-based stats.
Identities = 36/294 (12%), Positives = 82/294 (27%), Gaps = 66/294 (22%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDT-------------------HLLTTA 41
+R R+ +++R+I L + A GS ++F T +
Sbjct: 38 IRS--RKPDELRKIFLKTGLIPSASGSAYLEF-QTSTNLPRSKLKTLIRPSSSLKITCAV 94
Query: 42 TLEEKVPMWIRNTKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSV 101
+ +P + + ++ P +T R +++ + AL+ V
Sbjct: 95 HGPKPLPRSAPFSPNLLLSTHVKFAPFATRRRRGYIR-----DVNERDLGVHLETALKGV 149
Query: 102 VDLSALGSRQIIIDCDVIQAD----------------------GGTRTAAITGAWVALHD 139
+ + I +++ + IT A A+ D
Sbjct: 150 IIGERWPKSGLDITVTILEGEDDRWWGDDLSSSPLGGIDGWGLMNVLAGCITVASAAIVD 209
Query: 140 CLQHMEDCSNKFQLSQVLKGHVAAI-------SCGMLCGYPIVDLDYGEDSTIDVDANFV 192
D + V H+ G + +
Sbjct: 210 ARIDCVDLITGGVAAFVENPHIEVSGEPEETNEKGRDRRLVLDPDPSEHQAIAAACVVGY 269
Query: 193 MTDSGHIVEV---------QGSAERATF-SQDHFFAMLNLAKDRIADLIKLQKD 236
M+ I E+ QG +++ + + +N A+ A L++ ++
Sbjct: 270 MSSRDEITELWLKGDTSDFQGGSQKGSLGHEALIDGAVNAARGTQAVLMEASRE 323
>gi|289620387|emb|CBI53245.1| unnamed protein product [Sordaria macrospora]
Length = 387
Score = 57.9 bits (138), Expect = 1e-06, Method: Composition-based stats.
Identities = 11/56 (19%), Positives = 18/56 (32%), Gaps = 1/56 (1%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGD-THLLTTATLEEKVPMWIRNTK 55
+R GR Q R + + GS + F D T + E + +
Sbjct: 27 IRPDGRSPTQFRPLVAETGILPGTNGSARICFADGTEAIVGVKAEVERTRTRHDFP 82
>gi|85080121|ref|XP_956484.1| hypothetical protein NCU01806 [Neurospora crassa OR74A]
gi|18376105|emb|CAD21171.1| related to rRNA processing protein [Neurospora crassa]
gi|28917550|gb|EAA27248.1| conserved hypothetical protein [Neurospora crassa OR74A]
Length = 391
Score = 57.9 bits (138), Expect = 1e-06, Method: Composition-based stats.
Identities = 11/56 (19%), Positives = 18/56 (32%), Gaps = 1/56 (1%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGD-THLLTTATLEEKVPMWIRNTK 55
+R GR Q R + + GS + F D T + E + +
Sbjct: 27 IRPDGRSPTQFRPLVAETGILPGTNGSARICFADGTEAIVGVKAEVERTRTRHDFP 82
>gi|326469677|gb|EGD93686.1| 3' exoribonuclease [Trichophyton tonsurans CBS 112818]
gi|326478793|gb|EGE02803.1| 3' exoribonuclease [Trichophyton equinum CBS 127.97]
Length = 379
Score = 57.9 bits (138), Expect = 1e-06, Method: Composition-based stats.
Identities = 12/47 (25%), Positives = 19/47 (40%), Gaps = 1/47 (2%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGD-THLLTTATLEEK 46
+R GR Q R ++ + A GS + F D T + E +
Sbjct: 34 IRPDGRSATQFRTLTAETSIVPNANGSARIGFADGTQAIVGVKAEVE 80
>gi|240282302|gb|EER45805.1| exosome complex exonuclease RRP45 [Ajellomyces capsulatus H143]
Length = 293
Score = 57.9 bits (138), Expect = 1e-06, Method: Composition-based stats.
Identities = 32/223 (14%), Positives = 69/223 (30%), Gaps = 20/223 (8%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+RL GR +Q+R ++++ G ++ G T ++ + E P R +
Sbjct: 23 VRLDGRALDQLRPLTVSFG---DEYGHVKLQLGKTSVVVRISAEVTKPRSERENDGIFTV 79
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
+ S R++ Q R+ + AL + A G
Sbjct: 80 SMELNDMASPAYETGRQSELESQLVRTLDRIIRRSNALDTESLCIAAGK--NCWHVRADV 137
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD--LD 178
+ + +A+ L + A + G + Y +
Sbjct: 138 HVVDSDGGLVDSCCLAIMTGL-------------LHFRLPEAVVREGRVTVYRPEERVPS 184
Query: 179 YGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLN 221
+ + + F M D G I+ + +++ S+ L+
Sbjct: 185 PLNLTKLPLSTTFNMYDEGRIIVLDATSKEEAVSEGSLIIALD 227
>gi|320036145|gb|EFW18084.1| 3' exoribonuclease [Coccidioides posadasii str. Silveira]
Length = 410
Score = 57.9 bits (138), Expect = 1e-06, Method: Composition-based stats.
Identities = 14/44 (31%), Positives = 23/44 (52%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE 44
+R++GR E+Q R S+ + GS +V+ GDT + E
Sbjct: 49 IRINGRSESQFRPASVNTGSLSHTNGSAVVRIGDTTAVCGVRGE 92
>gi|331237979|ref|XP_003331645.1| hypothetical protein PGTG_12810 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|309310635|gb|EFP87226.1| hypothetical protein PGTG_12810 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 311
Score = 57.9 bits (138), Expect = 1e-06, Method: Composition-based stats.
Identities = 34/266 (12%), Positives = 71/266 (26%), Gaps = 33/266 (12%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR R E +R +++ + ++GS FGD L T +V + ++
Sbjct: 4 MRSDSRTEADIRSLTMRMSILSRSDGSAQFSFGDLKALGAVTGPAEVRIRDEKPTEAFVD 63
Query: 61 AEY------------GMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALG 108
+ + Q + + + + G
Sbjct: 64 VIVVPVCGLPGPPTKSLAHSIKSFFTPLILLKKYPRSLIQINLQTLSKPSDRWTNGFTTG 123
Query: 109 SRQIIIDCDVIQADGGTRT--AAITGAWVALHDCLQHMEDCSN---KFQLSQVLKGHVAA 163
+ + + + A I A +AL D M C+ L
Sbjct: 124 TLEPSATVPLFEETQSVSEKAALINAASLALLDAGVGMRGCAFAVGLAILPPSAVSPNHN 183
Query: 164 ISCGMLCGYPIVDLDYGEDSTIDVDANF-------------VMTDSGHIVEVQGSAERAT 210
+ ++D E+S+ + G + + + +
Sbjct: 184 NPQALESDLIVLDPSPTEESSAKSLHLVGFHFGHGFNTTTDSGVEIGTVALCESNG---S 240
Query: 211 FSQDHFFAMLNLAKDRIADLIKLQKD 236
FS D +L LA ++ +
Sbjct: 241 FSYDQLQTVLKLASLATQQILAFVRQ 266
>gi|303318537|ref|XP_003069268.1| exosome complex exonuclease rrp43, putative [Coccidioides
posadasii C735 delta SOWgp]
gi|240108954|gb|EER27123.1| exosome complex exonuclease rrp43, putative [Coccidioides
posadasii C735 delta SOWgp]
Length = 410
Score = 57.9 bits (138), Expect = 1e-06, Method: Composition-based stats.
Identities = 14/44 (31%), Positives = 23/44 (52%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE 44
+R++GR E+Q R S+ + GS +V+ GDT + E
Sbjct: 49 IRINGRSESQFRPASVNTGSLSHTNGSAVVRIGDTTAVCGVRGE 92
>gi|325184014|emb|CCA18471.1| exosome complex exonuclease RRP45like protein putati [Albugo
laibachii Nc14]
Length = 473
Score = 57.9 bits (138), Expect = 1e-06, Method: Composition-based stats.
Identities = 43/271 (15%), Positives = 80/271 (29%), Gaps = 47/271 (17%)
Query: 1 MRLSGRQENQMREISLTR---RVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHG 57
+R GR+ Q R+IS+ A + G+T +L E P + G
Sbjct: 28 IRTDGREMMQQRKISIQFRRNSSQSQAS----LCLGNTRVLANVHGEIVTP-FPDRPTEG 82
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSA--------LGS 109
+ + P ++ N +GR S E+ +MI R++R
Sbjct: 83 FFNTSVDLSPMASQNF-----ETGRPSSLSIELAKMIDRSIRDCRAFDTEALAILAGEKV 137
Query: 110 RQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKG---------- 159
I + VI DG A + AL + + + +
Sbjct: 138 WAIYCEVHVIDHDGNLTDAVQIASIAALMHFRRPDLSLELQKENEDIKNFEAYDTIPLSL 197
Query: 160 ---------------HVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQG 204
+ G +D E+ ++ F+ + V
Sbjct: 198 HHIPLSVSFSYMLTRDNMDKNDGSSSPLFFMDPTSREEQVMNGVITFIFNSFRELCAVHK 257
Query: 205 SAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
+ A S + +A R+ +L+ + K
Sbjct: 258 NG-GAPISTEDILRCAQIAAARVGELVSVLK 287
>gi|325095771|gb|EGC49081.1| 3' exoribonuclease [Ajellomyces capsulatus H88]
Length = 421
Score = 57.9 bits (138), Expect = 1e-06, Method: Composition-based stats.
Identities = 12/44 (27%), Positives = 22/44 (50%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE 44
+R++GR +Q R +S+ + S +V+ GDT + E
Sbjct: 59 LRVNGRVPSQFRPVSINTGSLTHTNASAVVRIGDTVAVCGVRGE 102
>gi|240273287|gb|EER36808.1| 3' exoribonuclease [Ajellomyces capsulatus H143]
Length = 367
Score = 57.9 bits (138), Expect = 1e-06, Method: Composition-based stats.
Identities = 12/44 (27%), Positives = 22/44 (50%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE 44
+R++GR +Q R +S+ + S +V+ GDT + E
Sbjct: 59 LRVNGRVPSQFRPVSINTGSLTHTNASAVVRIGDTVAVCGVRGE 102
>gi|225558044|gb|EEH06329.1| 3' exoribonuclease [Ajellomyces capsulatus G186AR]
Length = 437
Score = 57.9 bits (138), Expect = 1e-06, Method: Composition-based stats.
Identities = 12/44 (27%), Positives = 22/44 (50%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE 44
+R++GR +Q R +S+ + S +V+ GDT + E
Sbjct: 59 LRVNGRVPSQFRPVSINTGSLTHTNASAVVRIGDTVAVCGVRGE 102
>gi|154280581|ref|XP_001541103.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
gi|150411282|gb|EDN06670.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
Length = 440
Score = 57.9 bits (138), Expect = 1e-06, Method: Composition-based stats.
Identities = 12/44 (27%), Positives = 22/44 (50%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE 44
+R++GR +Q R +S+ + S +V+ GDT + E
Sbjct: 59 LRVNGRVPSQFRPVSINTGSLTHTNASAVVRIGDTVAVCGVRGE 102
>gi|145606074|ref|XP_370186.2| hypothetical protein MGG_06683 [Magnaporthe oryzae 70-15]
gi|145013801|gb|EDJ98442.1| hypothetical protein MGG_06683 [Magnaporthe oryzae 70-15]
Length = 393
Score = 57.9 bits (138), Expect = 1e-06, Method: Composition-based stats.
Identities = 11/47 (23%), Positives = 18/47 (38%), Gaps = 1/47 (2%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGD-THLLTTATLEEK 46
+R GR Q R ++ + GS + F D T + E +
Sbjct: 28 IRPDGRTATQFRPLTAETGILPGTNGSARICFADGTEAIVGVKAEVE 74
>gi|207109310|ref|ZP_03243472.1| polynucleotide phosphorylase/polyadenylase [Helicobacter pylori
HPKX_438_CA4C1]
Length = 204
Score = 57.9 bits (138), Expect = 1e-06, Method: Composition-based stats.
Identities = 25/150 (16%), Positives = 57/150 (38%), Gaps = 14/150 (9%)
Query: 93 MIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQ 152
M RAL + + + I + ++++++G + A++ +AL+ + D
Sbjct: 1 MAKRALETSIKNK---EQVIRLVSEILESNGSSSMASVCAGSLALYASGVEIYDLVAGVA 57
Query: 153 LSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFS 212
+ V +G AI + ED+ D+D G I +Q + +
Sbjct: 58 MGMVSEGQDHAILSD---------ISGLEDAEGDMDFKIAGNLEG-ITAMQMDTKMSGIQ 107
Query: 213 QDHFFAMLNLAKDRIADLIKLQKDVISNEV 242
+ + L AK ++K+ + ++
Sbjct: 108 LEILYQALLQAKKAREHILKIMHEA-KEKI 136
>gi|59809424|gb|AAH89995.1| Exosc7 protein [Rattus norvegicus]
Length = 257
Score = 57.9 bits (138), Expect = 1e-06, Method: Composition-based stats.
Identities = 30/235 (12%), Positives = 64/235 (27%), Gaps = 19/235 (8%)
Query: 14 ISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGNR 73
+ + V GS VK G T +L E P + G++ +T
Sbjct: 1 VEVETDVVSNTSGSARVKLGHTDILVGVKAEMGTPK-LERPSEGYLEFFVDCSANATPEF 59
Query: 74 VKREAVSGRQGGRSQEIQRMIGRA---LRSVVDLSALGSRQIIIDCDVIQADGGTRTAAI 130
R + + ++ LRS+ + +D +++ G A
Sbjct: 60 EGRGGDDLGTEIANTLYRIFNNKSSVDLRSLCISPREHCWVLYVDVLLLECGGNLFDAIS 119
Query: 131 TGAWVALHDCLQHMED-------CSNKFQLSQVLKGH-------VAAISCGMLCGYPIVD 176
AL + + ++ + +VD
Sbjct: 120 IAVKAALFNTRIPRVRVLEDEEGSKDIELSDDPYDCIRLSVENVPCIVTLCKIGCRHVVD 179
Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231
E++ +T G + ++ + + + F M+ +K L
Sbjct: 180 ATLQEEACSLASLLVSVTSKGVVTCMRKVGK-GSLDPESIFEMMESSKRVGKVLH 233
>gi|328859073|gb|EGG08183.1| hypothetical protein MELLADRAFT_105134 [Melampsora larici-populina
98AG31]
Length = 285
Score = 57.5 bits (137), Expect = 1e-06, Method: Composition-based stats.
Identities = 35/243 (14%), Positives = 65/243 (26%), Gaps = 19/243 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R GR Q R I + +V A GS ++ D L+ + P N+ +
Sbjct: 50 RSDGRTNQQFRPIHVKTKVVSSANGSSYLETTDCKLICAVYGPK--PRTTANSSSSNLNI 107
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
+ P S + Q + L + + + + +
Sbjct: 108 HFKFTPFSLSTSFTSSISTLESNLSQALHQSLAPSLLLNPTEF-----YDLHLTVLQSHS 162
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGH--VAAISCGMLCGYPIVDLDY 179
T I A +AL + + +DL Y
Sbjct: 163 PLSI-THPILAATIALGSAGVPTLGLVIGISAAISSDLELLIDPTFIESQNALAHLDLSY 221
Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
NF ++ + + F L+LA+D L + +
Sbjct: 222 LTSIDSVTHLNFRSHLDFNL---------SKIDLNQFLTYLDLARDVTQSLHPIAVQALQ 272
Query: 240 NEV 242
N++
Sbjct: 273 NDL 275
>gi|327354674|gb|EGE83531.1| 3' exoribonuclease [Ajellomyces dermatitidis ATCC 18188]
Length = 440
Score = 57.5 bits (137), Expect = 1e-06, Method: Composition-based stats.
Identities = 12/48 (25%), Positives = 19/48 (39%), Gaps = 1/48 (2%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGD-THLLTTATLEEKV 47
+R GR Q R ++ + A GS + F D T + E +
Sbjct: 39 VRTDGRSATQFRPLTAETDILPGANGSARIGFADGTQAIVGVKAEVER 86
>gi|239615524|gb|EEQ92511.1| 3' exoribonuclease [Ajellomyces dermatitidis ER-3]
Length = 441
Score = 57.5 bits (137), Expect = 1e-06, Method: Composition-based stats.
Identities = 12/48 (25%), Positives = 19/48 (39%), Gaps = 1/48 (2%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGD-THLLTTATLEEKV 47
+R GR Q R ++ + A GS + F D T + E +
Sbjct: 39 VRTDGRSATQFRPLTAETDILPGANGSARIGFADGTQAIVGVKAEVER 86
>gi|261199498|ref|XP_002626150.1| 3' exoribonuclease [Ajellomyces dermatitidis SLH14081]
gi|239594358|gb|EEQ76939.1| 3' exoribonuclease [Ajellomyces dermatitidis SLH14081]
Length = 436
Score = 57.5 bits (137), Expect = 1e-06, Method: Composition-based stats.
Identities = 12/48 (25%), Positives = 19/48 (39%), Gaps = 1/48 (2%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGD-THLLTTATLEEKV 47
+R GR Q R ++ + A GS + F D T + E +
Sbjct: 39 VRTDGRSATQFRPLTAETDILPGANGSARIGFADGTQAIVGVKAEVER 86
>gi|294945801|ref|XP_002784833.1| Exosome complex exonuclease RRP42, putative [Perkinsus marinus ATCC
50983]
gi|239898075|gb|EER16629.1| Exosome complex exonuclease RRP42, putative [Perkinsus marinus ATCC
50983]
Length = 289
Score = 57.5 bits (137), Expect = 1e-06, Method: Composition-based stats.
Identities = 29/255 (11%), Positives = 66/255 (25%), Gaps = 19/255 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+R GR + R IS+T A S + +TH++ + + +
Sbjct: 28 VRSDGRNCHDRRPISITTNTISAANASATLDCDNTHIIVGIKTDITTLPSGAVNRCRLVR 87
Query: 61 AEYGMLPRSTGN-----------RVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGS 109
+ K + I + V+ S +
Sbjct: 88 IGVECPEQPGEEEQQLNTALDVLMFKGLDETCLIIDNPFAWTISIDILITGVIHPSIV-E 146
Query: 110 RQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML 169
+ + + + I + E+ +N ++ ++ + G+
Sbjct: 147 LSSLAIIAAFKGLWLPKVSVIPPLEEGEKPSINLEEEDTNGHDITPLVSALPICVVSGIN 206
Query: 170 CGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQG-------SAERATFSQDHFFAMLNL 222
+VD+ E + + G IV + A +L
Sbjct: 207 GPRMVVDVSAAEAKSCRGVLAVGVDRKGCIVSIWKWNMIVREEASCMGMDPHLLPELLIH 266
Query: 223 AKDRIADLIKLQKDV 237
A++ + L
Sbjct: 267 AQEEASHLYDALHRA 281
>gi|238567177|ref|XP_002386186.1| hypothetical protein MPER_15667 [Moniliophthora perniciosa FA553]
gi|215437404|gb|EEB87116.1| hypothetical protein MPER_15667 [Moniliophthora perniciosa FA553]
Length = 80
Score = 57.5 bits (137), Expect = 1e-06, Method: Composition-based stats.
Identities = 9/40 (22%), Positives = 16/40 (40%)
Query: 5 GRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE 44
GR+ +R I L + + A GS ++ T +
Sbjct: 41 GRKPADIRPIFLQPGLIRQANGSAYIETEKTKVACAVYGP 80
>gi|147852316|emb|CAN82224.1| hypothetical protein VITISV_011872 [Vitis vinifera]
Length = 1621
Score = 57.5 bits (137), Expect = 1e-06, Method: Composition-based stats.
Identities = 43/265 (16%), Positives = 79/265 (29%), Gaps = 25/265 (9%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKV------------P 48
+R R + R+ SL A+GS L K G T E +
Sbjct: 36 IRPDARPLGRARDTSLALGAVASADGSALAKIGCTQNECQYGGERGLGLCGXGXLQYYLC 95
Query: 49 MWIRNTKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEI------QRMIGRALRSVV 102
+ I G T V A + G + A +
Sbjct: 96 VGIFGHFWGPGPHGTITNADFTKAVVPYWASVLQGSGMINLKELSLVSGKAAWMAYLDIY 155
Query: 103 DLSALGSRQIIIDCDVIQADGGTRTAAITGA-------WVALHDCLQHMEDCSNKFQLSQ 155
L A GS + A R ++ ++ + ++ NK +
Sbjct: 156 CLDADGSLFDAALLAAVAAFSHLRIPVVSLNEEGRVVVVSEENEEGKSEKEPVNKGKRKL 215
Query: 156 VLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDH 215
L +++C + Y + D E+S ++ V+ SG +V +
Sbjct: 216 TLSSLPFSLTCILHKNYILADPTAEEESIMETLVTVVLDSSGQLVSLYKPGGPVLAYASA 275
Query: 216 FFAMLNLAKDRIADLIKLQKDVISN 240
+ L + R+ +L + + IS+
Sbjct: 276 VQDCIALTRQRVKELKSILNEAISD 300
>gi|330930200|ref|XP_003302936.1| hypothetical protein PTT_14933 [Pyrenophora teres f. teres 0-1]
gi|311321403|gb|EFQ88972.1| hypothetical protein PTT_14933 [Pyrenophora teres f. teres 0-1]
Length = 327
Score = 57.5 bits (137), Expect = 1e-06, Method: Composition-based stats.
Identities = 32/272 (11%), Positives = 70/272 (25%), Gaps = 44/272 (16%)
Query: 6 RQENQMREISLTRRVSKYAEGSCLVKFGD------------THLL---TTATLEEKVPMW 50
R N++R I L + A GS ++ T L + + +P
Sbjct: 41 RGPNELRRIFLQTSIIPSASGSAYLEIPSSSPCTTSSLIPPTSSLKITASIQGPKPLPRS 100
Query: 51 IRNTKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSR 110
+ +T P +T +R S +++ + ALR V+
Sbjct: 101 APFSPSLLLTTTVKFAPFATRHRRGYIRDS-----TERDLGVHLETALRGVIIGERWPKS 155
Query: 111 QIIIDCDVIQADGG---------------------TRTAAITGAWVALHDCLQHMEDCSN 149
+ + +++ D IT A A+ D D
Sbjct: 156 GVEVVVTILEGDEDGWWGDSGSEGSASGSGWGLLNVLAGCITVASAAMTDAGIDCVDMVC 215
Query: 150 KFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERA 209
+ G + + + I E+ +
Sbjct: 216 GGVAAITRNP---GSKQGQGLARILDPCPAEHKDVVAACVVGYLGSRDEITEIWMKGDVG 272
Query: 210 TFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
+ ++ A +A + + + + +
Sbjct: 273 SDPDALIEGAIHAAVGSLAVVKDVLLEALQTK 304
>gi|328850748|gb|EGF99909.1| hypothetical protein MELLADRAFT_68249 [Melampsora larici-populina
98AG31]
Length = 271
Score = 57.5 bits (137), Expect = 2e-06, Method: Composition-based stats.
Identities = 44/256 (17%), Positives = 86/256 (33%), Gaps = 42/256 (16%)
Query: 1 MRLSGRQENQMREISLTRRVSKYA----EGSCLVKFGDTHLLTTATLEEKVPMWIRNTKH 56
+R R+ ++R++ + K + +GS +V G T + ++ + +++ +
Sbjct: 12 LRQDNRRPYELRQLDFK--ILKSSPNSLDGSSIVSHGLTKVTSSVSGPKEITSSSSSNHK 69
Query: 57 ----------GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSA 106
G I M S +R K V R I SV+ L
Sbjct: 70 SNLKSHTNNVGSIQVYVNMTNFSQSDRKKLSKVDKRLMDL----SFSIQNTFESVIMLKL 125
Query: 107 LGSRQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISC 166
I I +V+Q DGG AAI ++L ++D +I
Sbjct: 126 YPRSLIEIFIEVLQEDGGLLQAAINATSLSLIASGISIQDYIL-----------AISIGS 174
Query: 167 GMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226
P++D+ E + + S I +Q + + D F + + +
Sbjct: 175 LSNPNLPLLDVTNLEQLDLPSLTIASLPRSSKISLIQV---ESRLNIDEFEKLCRIGLEA 231
Query: 227 IADLIKLQKDVISNEV 242
+V+ +E+
Sbjct: 232 C--------EVLKDEL 239
>gi|116199467|ref|XP_001225545.1| hypothetical protein CHGG_07889 [Chaetomium globosum CBS 148.51]
gi|88179168|gb|EAQ86636.1| hypothetical protein CHGG_07889 [Chaetomium globosum CBS 148.51]
Length = 189
Score = 57.5 bits (137), Expect = 2e-06, Method: Composition-based stats.
Identities = 11/57 (19%), Positives = 17/57 (29%), Gaps = 1/57 (1%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGD-THLLTTATLEEKVPMWIRNTKH 56
+R GR Q R + + GS + F D T + E +
Sbjct: 27 IRPDGRSPTQFRPLVAETGILPGTNGSARICFADGTEAIVGVKAEVERTAQRPGEDT 83
>gi|167537668|ref|XP_001750502.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163771042|gb|EDQ84716.1| predicted protein [Monosiga brevicollis MX1]
Length = 1499
Score = 57.5 bits (137), Expect = 2e-06, Method: Composition-based stats.
Identities = 40/267 (14%), Positives = 78/267 (29%), Gaps = 29/267 (10%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+R GR+ + R ++ V + A GS +V G T ++ + E P N GW+
Sbjct: 1227 VRPDGRELAEPRVTRVSVNVVQSANGSSMVVMGKTSVMASLKAEFANPPLNPNAASGWLV 1286
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIII---DCD 117
A M P + + + + ++ + L ++ + D
Sbjct: 1287 ANVTMPPMCSSTITPGPPSTQARALSTFLSDILLRHNVVRPEQLVIKANKLVWCLFLDVV 1346
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISC----------- 166
V+ DG A + A AL + +++ + + S
Sbjct: 1347 VLNDDGNLPDAILLAAAAALQTATLPTVESADENEDAGEDTIPTVDPSQRVALSLGQLPL 1406
Query: 167 -------GMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHI--------VEVQGSAERATF 211
+VD + E++ VM + V
Sbjct: 1407 AATMAWLHQDAEEILVDPTHEEENMATACMTVVMQGDKVLRTDLPSVHVAPSTMQTVMPL 1466
Query: 212 SQDHFFAMLNLAKDRIADLIKLQKDVI 238
A + A R +L L + +
Sbjct: 1467 PVSAMQAAVRSAAVRTQELQGLLRSAV 1493
>gi|55644221|ref|XP_523406.1| PREDICTED: exosome complex component MTR3 [Pan troglodytes]
Length = 272
Score = 57.5 bits (137), Expect = 2e-06, Method: Composition-based stats.
Identities = 35/245 (14%), Positives = 74/245 (30%), Gaps = 28/245 (11%)
Query: 6 RQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK---------- 55
R ++R + + A+GS ++ G T +L + + R +
Sbjct: 31 RDPTRLRPVYARAGLLSQAKGSAYLEAGGTKVLCAVSGPRQAEGGERGSGPAGAGGEAPA 90
Query: 56 --HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQII 113
G + ++ P + R +E+ + AL V L Q+
Sbjct: 91 ALRGRLLCDFRRAPFAGRRRRAPPGGC-----EERELALALQEALEPAVRLGRYPRAQLE 145
Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP 173
+ +++ G AA+T A +AL D M D LS +
Sbjct: 146 VSALLLEDGGSALAAALTAAALALADAGVEMYDLVVGCGLSLAPGPAPTWL--------- 196
Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
+D E+ + + V + ++ + + L + L +
Sbjct: 197 -LDPTRLEEERAAAGLTVALMPVLNQVAGLLGSGEGGLTES-WAEAVRLGLEGCQRLYPV 254
Query: 234 QKDVI 238
+ +
Sbjct: 255 LQQSL 259
>gi|67623169|ref|XP_667867.1| hypothetical protein [Cryptosporidium hominis TU502]
gi|54659037|gb|EAL37636.1| hypothetical protein Chro.40220 [Cryptosporidium hominis]
Length = 239
Score = 57.2 bits (136), Expect = 2e-06, Method: Composition-based stats.
Identities = 37/249 (14%), Positives = 70/249 (28%), Gaps = 28/249 (11%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+R GR + IS + GS G + ++ T E+ +
Sbjct: 3 IRYDGRTNLECGAISANVGIFNSLNGSAEFSIGLSKVIATVWRPEEA------------S 50
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
+ R + G+ + I+ I R V+D ++ I I ++
Sbjct: 51 SNKCKSYLEVILRPRI----GQPQESHKLIEYHILRLFEKVIDFNSFSRCVISITLQIVS 106
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
DG I A +AL D ME + + +
Sbjct: 107 EDGPILPVCINAAVLALIDSGIPME---FFPLAISIAESSHFYGERDISHLMLDPTQSEF 163
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFA-----MLNLAKDR--IADLIKL 233
E T+ + + + S + L++A + L ++
Sbjct: 164 EQCISCSTIVINTTEKNIFSCI--TNKGTGVSHNKLLDEIHPISLSVATSNSLVKHLSEI 221
Query: 234 QKDVISNEV 242
D I +V
Sbjct: 222 LLDNIKCKV 230
>gi|301095816|ref|XP_002897007.1| conserved hypothetical protein [Phytophthora infestans T30-4]
gi|262108436|gb|EEY66488.1| conserved hypothetical protein [Phytophthora infestans T30-4]
Length = 171
Score = 57.2 bits (136), Expect = 2e-06, Method: Composition-based stats.
Identities = 26/144 (18%), Positives = 44/144 (30%), Gaps = 6/144 (4%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWI-RNTKHGWIT 60
R GR N++R + + A+GS + G + +L + W NT +
Sbjct: 8 RQDGRAGNELRPFASEQGALFRADGSARMSHGSSTVLAAVYGPGQARNWRAENTDKATLD 67
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
+ + ++ K RQ + RA+ S+V
Sbjct: 68 VCFKLEKGIMTSKEKEYEQIIRQTFAPVVLTDSFPRAVISIVVQ-----VIEDNGSISFP 122
Query: 121 ADGGTRTAAITGAWVALHDCLQHM 144
AI +AL D M
Sbjct: 123 LFLIIAALAINAVSLALMDAGVPM 146
>gi|302415791|ref|XP_003005727.1| conserved hypothetical protein [Verticillium albo-atrum VaMs.102]
gi|261355143|gb|EEY17571.1| conserved hypothetical protein [Verticillium albo-atrum VaMs.102]
Length = 373
Score = 57.2 bits (136), Expect = 2e-06, Method: Composition-based stats.
Identities = 12/47 (25%), Positives = 18/47 (38%), Gaps = 1/47 (2%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGD-THLLTTATLEEK 46
+R GR Q R ++ + GS V F D T + E +
Sbjct: 28 IRPDGRTPTQFRPLTAETGILPGTNGSARVCFSDGTEAIVGIKAELE 74
>gi|189205667|ref|XP_001939168.1| 3' exoribonuclease family protein [Pyrenophora tritici-repentis
Pt-1C-BFP]
gi|187975261|gb|EDU41887.1| 3' exoribonuclease family protein [Pyrenophora tritici-repentis
Pt-1C-BFP]
Length = 327
Score = 57.2 bits (136), Expect = 2e-06, Method: Composition-based stats.
Identities = 32/272 (11%), Positives = 70/272 (25%), Gaps = 44/272 (16%)
Query: 6 RQENQMREISLTRRVSKYAEGSCLVKFGD------------THLL---TTATLEEKVPMW 50
R N++R I L + A GS ++ T L + + +P
Sbjct: 41 RDPNELRRIFLQTSIIPSASGSAYLEIPSSSPSATSSLIPPTSSLKITASIQGPKPLPRS 100
Query: 51 IRNTKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSR 110
+ +T P +T +R S +++ + ALR V+
Sbjct: 101 APFSPSLLLTTTVKFAPFATRHRRGYIRDS-----TERDLGVHLETALRGVIIGERWPKS 155
Query: 111 QIIIDCDVIQADGG---------------------TRTAAITGAWVALHDCLQHMEDCSN 149
+ + +++ D IT A A+ D D
Sbjct: 156 GVEVVVTILEGDEDGWWGDSGSEGSASGSGWGLLNVLAGCITVASAAITDAGIDCVDMVC 215
Query: 150 KFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERA 209
+ A + + + I E+ +
Sbjct: 216 GGVAAITRNP---ASKQEQGLARILDPCPAEHKDVVAACVVGYLASRDEITEIWMKGDVG 272
Query: 210 TFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
+ ++ A +A + + + + +
Sbjct: 273 SNPDALIEGAIHAAVGSLAVVKDVLLEALQTK 304
>gi|226293456|gb|EEH48876.1| exosome complex exonuclease RRP45 [Paracoccidioides brasiliensis
Pb18]
Length = 300
Score = 57.2 bits (136), Expect = 2e-06, Method: Composition-based stats.
Identities = 28/221 (12%), Positives = 68/221 (30%), Gaps = 16/221 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+RL GR +Q+R + ++ G ++ G T ++ + E P R G T
Sbjct: 23 IRLDGRALDQLRPLMVSFG---NECGHVKLQLGKTSVVVRISAEVTKPHPEREND-GIFT 78
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
+ ++ + ++ + R+I R+ + + + +
Sbjct: 79 VVVELNDMASPAFKTGWQSEM-ETQLARILDRIIRRSNALDTESLCIAAGKNCWHIRADV 137
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
+ + +A+ L H + +V
Sbjct: 138 HVIDSDGGLVDSCCLAIMTALLHFRLPEAIVREGRVTVFSPEER-----------VPSPL 186
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLN 221
+ + + F + D G I+ + ++ S+ + LN
Sbjct: 187 NLTKLPLSTTFNIYDEGRIIVLDAVSKEEAVSEGNLIIALN 227
>gi|17402904|ref|NP_478126.1| exosome complex component MTR3 [Homo sapiens]
gi|74736141|sp|Q5RKV6|EXOS6_HUMAN RecName: Full=Exosome complex component MTR3; AltName: Full=Exosome
component 6; AltName: Full=mRNA transport regulator 3
homolog; Short=hMtr3; AltName: Full=p11
gi|122920912|pdb|2NN6|F Chain F, Structure Of The Human Rna Exosome Composed Of Rrp41,
Rrp45, Rrp46, Rrp43, Mtr3, Rrp42, Csl4, Rrp4, And Rrp40
gi|55930874|gb|AAH52252.1| Exosome component 6 [Homo sapiens]
gi|119572226|gb|EAW51841.1| exosome component 6 [Homo sapiens]
Length = 272
Score = 57.2 bits (136), Expect = 2e-06, Method: Composition-based stats.
Identities = 35/245 (14%), Positives = 73/245 (29%), Gaps = 28/245 (11%)
Query: 6 RQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK---------- 55
R ++R + + A+GS ++ G T +L + + R
Sbjct: 31 RDPTRLRPVYARAGLLSQAKGSAYLEAGGTKVLCAVSGPRQAEGGERGGGPAGAGGEAPA 90
Query: 56 --HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQII 113
G + ++ P + R +E+ + AL V L Q+
Sbjct: 91 ALRGRLLCDFRRAPFAGRRRRAPPGGC-----EERELALALQEALEPAVRLGRYPRAQLE 145
Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP 173
+ +++ G AA+T A +AL D M D LS +
Sbjct: 146 VSALLLEDGGSALAAALTAAALALADAGVEMYDLVVGCGLSLAPGPAPTWL--------- 196
Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
+D E+ + + V + ++ + + L + L +
Sbjct: 197 -LDPTRLEEERAAAGLTVALMPVLNQVAGLLGSGEGGLTES-WAEAVRLGLEGCQRLYPV 254
Query: 234 QKDVI 238
+ +
Sbjct: 255 LQQSL 259
>gi|190345706|gb|EDK37633.2| hypothetical protein PGUG_01731 [Meyerozyma guilliermondii ATCC
6260]
Length = 312
Score = 57.2 bits (136), Expect = 2e-06, Method: Composition-based stats.
Identities = 37/273 (13%), Positives = 82/273 (30%), Gaps = 41/273 (15%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+R GR+ +++R+ + +S G +++G+T L + E P + G T
Sbjct: 30 VRGDGRRIDEIRDPKII--LSPSEYGYVEIEWGNTKLAVRVSAEIAKP-YDDRPFEGIFT 86
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSAL--------GSRQI 112
+ P ++ +G+ + R++ +A+R L +
Sbjct: 87 INTEISPMASPQF-----ENGKNSDDEVLVSRIVEKAIRRSNALDLESLCIVAGSKVWAV 141
Query: 113 IIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQ-------------------- 152
D + + DGG A G VAL + +
Sbjct: 142 RADVNFLDFDGGLIDACALGVMVALQHFRKPDVSIDGESIVVHSMDERQPVALSILHVPL 201
Query: 153 ----LSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAER 208
+ ++D + E+ D + + I++V S
Sbjct: 202 CVSFSFFNPSDIEETVKGDASDEIAVMDATHEEELVRDGSLVVTLNKNREILQVSKSG-G 260
Query: 209 ATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
+ A ++L K+++ +
Sbjct: 261 LPIDAVVLMDLCRKAYTVTSELTDRVKEILKKD 293
>gi|302682326|ref|XP_003030844.1| hypothetical protein SCHCODRAFT_16010 [Schizophyllum commune
H4-8]
gi|300104536|gb|EFI95941.1| hypothetical protein SCHCODRAFT_16010 [Schizophyllum commune
H4-8]
Length = 341
Score = 57.2 bits (136), Expect = 2e-06, Method: Composition-based stats.
Identities = 16/50 (32%), Positives = 21/50 (42%), Gaps = 7/50 (14%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKF-------GDTHLLTTATLE 44
RL GR ++ REI L V+ A GS + G T + LE
Sbjct: 24 RLDGRALHEFREIQLETGVAPLASGSARLTIGAGKDGSGGTEVWAATKLE 73
>gi|24667071|ref|NP_649157.1| Mtr3 [Drosophila melanogaster]
gi|7293727|gb|AAF49096.1| Mtr3 [Drosophila melanogaster]
gi|157816310|gb|ABV82149.1| FI01414p [Drosophila melanogaster]
Length = 326
Score = 57.2 bits (136), Expect = 2e-06, Method: Composition-based stats.
Identities = 39/244 (15%), Positives = 77/244 (31%), Gaps = 14/244 (5%)
Query: 6 RQENQM--REISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPM-WIRNTKHGWITAE 62
R+ Q+ R + V GS +++G+T +L +++ R G +
Sbjct: 40 REPTQLAPRNTFIRAGVLTTVRGSAYMEYGNTKVLAIVAPPKELIRASARRMNMGVLNCY 99
Query: 63 YGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQAD 122
STG+ R + + M+ +A+ VV + + Q+ I ++ D
Sbjct: 100 VNFAAFSTGDLDSVP-------ERERHLSSMLTKAMEPVVCRTEFLNFQLDIRVLILDDD 152
Query: 123 GGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKG----HVAAISCGMLCGYPIVDLD 178
G + AI VAL +C D A + +
Sbjct: 153 GCLLSTAINCCGVALVECGISTYDLITASTACIYRDHVFLNPSAKVEELLWKHRNSSTDS 212
Query: 179 YGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
S+ + ++ + S + +L+ L +L K V+
Sbjct: 213 TTSPSSAQEHGLIITASMDTFEQIAQCQQCGYLSPATYVKLLDYTLAINKSLRELVKGVL 272
Query: 239 SNEV 242
+ V
Sbjct: 273 TKRV 276
>gi|255932009|ref|XP_002557561.1| Pc12g07260 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211582180|emb|CAP80353.1| Pc12g07260 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 384
Score = 56.8 bits (135), Expect = 3e-06, Method: Composition-based stats.
Identities = 12/47 (25%), Positives = 18/47 (38%), Gaps = 1/47 (2%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGD-THLLTTATLEEK 46
+R GR Q R +S + GS + F D T + E +
Sbjct: 35 IRPDGRSPTQFRPLSAETTILPGTNGSARIGFADGTQAIVGVKAEVE 81
>gi|225680115|gb|EEH18399.1| 3' exoribonuclease family protein [Paracoccidioides brasiliensis
Pb03]
Length = 350
Score = 56.8 bits (135), Expect = 3e-06, Method: Composition-based stats.
Identities = 37/294 (12%), Positives = 82/294 (27%), Gaps = 66/294 (22%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDT-------------------HLLTTA 41
+R R+ +++R+I L + A GS ++F T L
Sbjct: 38 IRS--RKPDELRKIFLKTGLIPSASGSAYLEF-QTSTNLPRSKLKTLIPPSSSLKLTCAV 94
Query: 42 TLEEKVPMWIRNTKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSV 101
+ +P + + ++ P +T R +++ + AL+ V
Sbjct: 95 HGPKPLPRSAPFSPNLLLSTHVKFAPFATRRRRGYIR-----DVNERDLGVHLETALKGV 149
Query: 102 VDLSALGSRQIIIDCDVIQAD----------------------GGTRTAAITGAWVALHD 139
+ + I +++ + IT A A+ D
Sbjct: 150 IIGERWPKSGLDITVTILEGEDDRWWGDALSSSPLGGIDGWGLMNVLAGCITVASAAIVD 209
Query: 140 CLQHMEDCSNKFQLSQVLKGHVAAI-------SCGMLCGYPIVDLDYGEDSTIDVDANFV 192
D + V H+ G + +
Sbjct: 210 ARIDCVDLITGGVAAFVENPHIEVSGEPEETNEKGRDRRLVLDPDPSEHQAIAAACVVGY 269
Query: 193 MTDSGHIVEV---------QGSAERATF-SQDHFFAMLNLAKDRIADLIKLQKD 236
M+ I E+ QG +++ + + +N A+ A L++ ++
Sbjct: 270 MSSRDEITELWLKGDTSDFQGGSQKGSLGHEALIDGAVNAARGTQAVLMEASRE 323
>gi|307185835|gb|EFN71676.1| Exosome complex exonuclease RRP46 [Camponotus floridanus]
Length = 220
Score = 56.8 bits (135), Expect = 3e-06, Method: Composition-based stats.
Identities = 35/228 (15%), Positives = 68/228 (29%), Gaps = 28/228 (12%)
Query: 11 MREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRST 70
+R ++ + ++GS + GDT ++ +V I Y L
Sbjct: 12 LRPMNCEINLLSRSDGSTMFMQGDTTIVAGINGPMEVKSQKMAYDKLSIEVTYTPLTGPA 71
Query: 71 GNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAI 130
+ R+ S + +S + I I+ +Q GG AI
Sbjct: 72 KVDDRLIETYIRES-------------CESAILVSLHPNTMICINLQEVQDSGGLLACAI 118
Query: 131 TGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDAN 190
+ +AL + M+ + G I+D D + +
Sbjct: 119 NASCLALINSGLSMK-----------FTIAAVSCMIEKETGKIIMDPDNTQLKNAKAEFT 167
Query: 191 FVMTD-SGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
+ + IV FSQ F A ++ K + +++
Sbjct: 168 YAFDSINKDIVCCHSVGR---FSQSEFLASVDKCKQVSQFIFDFYREI 212
>gi|193652700|ref|XP_001948203.1| PREDICTED: exosome complex exonuclease RRP46-like [Acyrthosiphon
pisum]
Length = 211
Score = 56.8 bits (135), Expect = 3e-06, Method: Composition-based stats.
Identities = 25/227 (11%), Positives = 59/227 (25%), Gaps = 26/227 (11%)
Query: 14 ISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGNR 73
+ EGS + G + + + + Y R
Sbjct: 6 LKCQLGFLGNTEGSAYLSQGKSTVSVSVVGP---------FEPKASKCMYDRATVDVTFR 56
Query: 74 VKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGA 133
K +++ +Q +AL I++ +Q G + + +
Sbjct: 57 RKTGSITVHDKMLEGIMQSTCEKALVV----EQYPRTTIVVTVQEMQDRGNLLSTCLNAS 112
Query: 134 WVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVM 193
+ L + M V + ++ S + F
Sbjct: 113 CMGLMNSGIAMH-HLYAAVSCAVTEKEEIILNPDE---------TQINSSVAYLTLVFAN 162
Query: 194 TDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
T++ ++ + E FSQ + ++ ++ + VI
Sbjct: 163 TETRCLLTSHTTGE---FSQKTYMDCMDKCYAASKEVFNFYQKVIKK 206
>gi|149038199|gb|EDL92559.1| rCG51656 [Rattus norvegicus]
Length = 252
Score = 56.8 bits (135), Expect = 3e-06, Method: Composition-based stats.
Identities = 36/245 (14%), Positives = 70/245 (28%), Gaps = 48/245 (19%)
Query: 6 RQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK---------- 55
R ++R + + A+GS ++ G T +L + + R
Sbjct: 31 RDPTRLRPVYARAGLLSQAKGSAYLEAGGTKVLCAVSGPRQAEGGERGGGPAGAGGEAPA 90
Query: 56 --HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQII 113
G + ++ P S R + +E+ + AL V L Q+
Sbjct: 91 ALRGRLLCDFRRAPFSGRRRRAPQG-----SSEDRELGLALQEALEPAVRLGRYPRAQLE 145
Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP 173
+ +++ G AA+T A +AL D M D
Sbjct: 146 VSALLLEDGGSALAAALTAAALALADAGVEMYDLVVGC---------------------- 183
Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
S +M + + GS E + + + L + L +
Sbjct: 184 -------GLSLTPGLTVALMPVLNQVAGLLGSGEGG--QTESWTDAVRLGLEGCQRLYPV 234
Query: 234 QKDVI 238
+ +
Sbjct: 235 LQQCL 239
>gi|224537696|ref|ZP_03678235.1| hypothetical protein BACCELL_02578 [Bacteroides cellulosilyticus
DSM 14838]
gi|224520699|gb|EEF89804.1| hypothetical protein BACCELL_02578 [Bacteroides cellulosilyticus
DSM 14838]
Length = 246
Score = 56.8 bits (135), Expect = 3e-06, Method: Composition-based stats.
Identities = 16/75 (21%), Positives = 26/75 (34%), Gaps = 1/75 (1%)
Query: 166 CGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKD 225
G + D+ ED D+D T +G I Q + S + LN AK+
Sbjct: 6 PGEDKYAVLSDILGDEDHLGDMDFKVTGTKNG-ITATQMDIKVDGLSFEILERALNQAKE 64
Query: 226 RIADLIKLQKDVISN 240
++ + I
Sbjct: 65 GRMHILGKILETIQE 79
>gi|225684062|gb|EEH22346.1| exosome component 9 [Paracoccidioides brasiliensis Pb03]
Length = 295
Score = 56.8 bits (135), Expect = 3e-06, Method: Composition-based stats.
Identities = 28/221 (12%), Positives = 68/221 (30%), Gaps = 16/221 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+RL GR +Q+R + ++ G ++ G T ++ + E P R G T
Sbjct: 23 IRLDGRALDQLRPLMVSFG---NECGHVKLQLGKTSVVVRISAEVTKPHPEREND-GIFT 78
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
+ ++ + ++ + R+I R+ + + + +
Sbjct: 79 VVVELNDMASPAFKTGWQSEM-ETQLARILDRIIRRSNALDTESLCIAAGKNCWHIRADV 137
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
+ + +A+ L H + +V
Sbjct: 138 HVIDSDGGLVDSCCLAIMTALLHFRLPEAIVREGRVTVFSPEER-----------VPSPL 186
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLN 221
+ + + F + D G I+ + ++ S+ + LN
Sbjct: 187 NLTKLPLSTTFNIYDEGRIIVLDAVSKEEAVSEGNLIIALN 227
>gi|224014598|ref|XP_002296961.1| predicted protein [Thalassiosira pseudonana CCMP1335]
gi|220968341|gb|EED86689.1| predicted protein [Thalassiosira pseudonana CCMP1335]
Length = 357
Score = 56.8 bits (135), Expect = 3e-06, Method: Composition-based stats.
Identities = 47/278 (16%), Positives = 81/278 (29%), Gaps = 41/278 (14%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R S R +R++ L R + + GS LV+ G T L+ + N +G
Sbjct: 74 RSSKRGPRTLRQLHLARSILSQSTGSSLVECGHTKLIVSVRGPRPANCGGLNGGNGGGLI 133
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEI------------------------------- 90
G R++ A S+
Sbjct: 134 CEVRYMPHIGIRMETLARHSLSHDFSKSSSSSTGARIPRDSLSTSQDTSNLSSGGALCAP 193
Query: 91 ---------QRMIGRAL-RSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVALHDC 140
+ AL +VV + I + V+Q+DGG AA+ GA +AL D
Sbjct: 194 AAFLDESYLSHRLQEALAPAVVLMDNENKMCIEVFVQVLQSDGGVFGAAVMGASLALVDA 253
Query: 141 LQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIV 200
M D + + + + D ED + + +
Sbjct: 254 GVGMRDVVCGSSAAVMKVVEEGDGAKNGTKSKYVAIADPSEDEILQASGVVTIAIMPNWR 313
Query: 201 EVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
EV + + + LA++ + K K +
Sbjct: 314 EVTVWDQFGKMPVESSQEAMELAREGCVTMHKFLKKCV 351
>gi|156056118|ref|XP_001593983.1| hypothetical protein SS1G_05411 [Sclerotinia sclerotiorum 1980]
gi|154703195|gb|EDO02934.1| hypothetical protein SS1G_05411 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 344
Score = 56.4 bits (134), Expect = 3e-06, Method: Composition-based stats.
Identities = 14/43 (32%), Positives = 21/43 (48%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE 44
R +GR Q R + +AEGS +V+ GDT ++ E
Sbjct: 40 RANGRSPTQFRGPHINTGSLTHAEGSAVVRIGDTAVVCGVRGE 82
>gi|66362890|ref|XP_628411.1| RRP45-like archaeo-eukaryotic exosomal rnase, PH domain
[Cryptosporidium parvum Iowa II]
gi|46229803|gb|EAK90621.1| RRP45-like archaeo-eukaryotic exosomal rnase, PH domain
[Cryptosporidium parvum Iowa II]
Length = 432
Score = 56.4 bits (134), Expect = 3e-06, Method: Composition-based stats.
Identities = 42/273 (15%), Positives = 74/273 (27%), Gaps = 43/273 (15%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+RL GR N+ R + + G V G TH+L+ E P R + G+I+
Sbjct: 37 LRLDGRTMNEYRNVKINLN---KNYGEVEVNIGRTHVLSVVKSELVAPSQER-SSEGFIS 92
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGR------ALRSVVDLSALGSRQIII 114
+ P S A + EI I R A+ + + G +
Sbjct: 93 FTVDIGPLSIN--PTSHAFRHNRTTLGTEIANYIERILKETGAIDTEILCILSGVCVWSV 150
Query: 115 DCDVIQADGGTRTAAITGA------------------------WVALHDCLQHMEDCSNK 150
C++ + + + +
Sbjct: 151 KCEIHVLFDDGNLFDACLMATLSGLKHYRYNEIDVDSFLKKSKCEGFGERDYQRLENTIR 210
Query: 151 FQLSQVLKGHVAAIS------CGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQG 204
H +S G IVD + E+S D + + D + +
Sbjct: 211 KLEMIPFNVHHFPLSISIGYINGKEGLSYIVDPNSDEESISDTIIHISINDKQEVCGISK 270
Query: 205 SAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
A S + + +A L + K
Sbjct: 271 FG-GAKLSLNQINFAIQIATIHSEKLHQEFKKA 302
>gi|323509319|dbj|BAJ77552.1| cgd7_2380 [Cryptosporidium parvum]
Length = 408
Score = 56.4 bits (134), Expect = 3e-06, Method: Composition-based stats.
Identities = 42/273 (15%), Positives = 74/273 (27%), Gaps = 43/273 (15%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+RL GR N+ R + + G V G TH+L+ E P R + G+I+
Sbjct: 13 LRLDGRTMNEYRNVKINLN---KNYGEVEVNIGRTHVLSVVKSELVAPSQER-SSEGFIS 68
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGR------ALRSVVDLSALGSRQIII 114
+ P S A + EI I R A+ + + G +
Sbjct: 69 FTVDIGPLSIN--PTSHAFRHNRTTLGTEIANYIERILKETGAIDTEILCILSGVCVWSV 126
Query: 115 DCDVIQADGGTRTAAITGA------------------------WVALHDCLQHMEDCSNK 150
C++ + + + +
Sbjct: 127 KCEIHVLFDDGNLFDACLMATLSGLKHYRYNEIDVDSFLKKSKCEGFGERDYQRLENTIR 186
Query: 151 FQLSQVLKGHVAAIS------CGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQG 204
H +S G IVD + E+S D + + D + +
Sbjct: 187 KLEMIPFNVHHFPLSISIGYINGKEGLSYIVDPNSDEESISDTIIHISINDKQEVCGISK 246
Query: 205 SAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
A S + + +A L + K
Sbjct: 247 FG-GAKLSLNQINFAIQIATIHSEKLHQEFKKA 278
>gi|326422440|gb|EGD71839.1| Putative exosome complex RNA-binding protein [Candidatus
Parvarchaeum acidiphilum ARMAN-4_'5-way FS']
Length = 102
Score = 56.4 bits (134), Expect = 3e-06, Method: Composition-based stats.
Identities = 15/72 (20%), Positives = 30/72 (41%), Gaps = 1/72 (1%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+RL R E + R+I++ V ++GS V+ G T ++ + P + G +
Sbjct: 17 IRLDQRSEFEGRKITIKDNVIHLSDGSAYVEIGGTKVMAGVKVLNGTP-FPDRQNEGALV 75
Query: 61 AEYGMLPRSTGN 72
+ +T
Sbjct: 76 VNFEASELATNY 87
>gi|189067465|dbj|BAG37447.1| unnamed protein product [Homo sapiens]
Length = 235
Score = 56.4 bits (134), Expect = 3e-06, Method: Composition-based stats.
Identities = 24/151 (15%), Positives = 41/151 (27%), Gaps = 16/151 (10%)
Query: 5 GRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYG 64
GR +R + + + +GS GDT +L +V +
Sbjct: 25 GRS---LRHFACEQNLLSRPDGSASFLQGDTSVLAGVYGPAEV---------KVSKEIFN 72
Query: 65 MLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGG 124
R K + R + I +VV + I + V+ G
Sbjct: 73 KATLEVILRPKIGLPGVAEKSRERL----IRNTCEAVVLGTLHPRTSITVVPQVVSDAGS 128
Query: 125 TRTAAITGAWVALHDCLQHMEDCSNKFQLSQ 155
+ A +AL D M +
Sbjct: 129 LLACCLNAACMALVDAGVPMRALFCGVACAL 159
>gi|226286640|gb|EEH42153.1| conserved hypothetical protein [Paracoccidioides brasiliensis
Pb18]
Length = 402
Score = 56.4 bits (134), Expect = 3e-06, Method: Composition-based stats.
Identities = 12/48 (25%), Positives = 19/48 (39%), Gaps = 1/48 (2%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGD-THLLTTATLEEKV 47
+R GR Q R ++ + A GS + F D T + E +
Sbjct: 37 IRTDGRSATQFRPLTAETDILSGANGSARIGFADGTQAIVGVKAEVER 84
>gi|295662903|ref|XP_002792005.1| conserved hypothetical protein [Paracoccidioides brasiliensis
Pb01]
gi|226279657|gb|EEH35223.1| conserved hypothetical protein [Paracoccidioides brasiliensis
Pb01]
Length = 432
Score = 56.4 bits (134), Expect = 3e-06, Method: Composition-based stats.
Identities = 12/48 (25%), Positives = 19/48 (39%), Gaps = 1/48 (2%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGD-THLLTTATLEEKV 47
+R GR Q R ++ + A GS + F D T + E +
Sbjct: 36 IRTDGRSATQFRPLTAETDILSGANGSARIGFADGTQAIVGVKAEVER 83
>gi|225684791|gb|EEH23075.1| conserved hypothetical protein [Paracoccidioides brasiliensis
Pb03]
Length = 430
Score = 56.4 bits (134), Expect = 3e-06, Method: Composition-based stats.
Identities = 12/48 (25%), Positives = 19/48 (39%), Gaps = 1/48 (2%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGD-THLLTTATLEEKV 47
+R GR Q R ++ + A GS + F D T + E +
Sbjct: 37 IRTDGRSATQFRPLTAETDILSGANGSARIGFADGTQAIVGVKAEVER 84
>gi|320591764|gb|EFX04203.1| 3 exoribonuclease family protein [Grosmannia clavigera kw1407]
Length = 317
Score = 56.4 bits (134), Expect = 3e-06, Method: Composition-based stats.
Identities = 34/267 (12%), Positives = 73/267 (27%), Gaps = 39/267 (14%)
Query: 5 GRQENQMREIS----LTRRVSKYAEGSCLVKF--G---DTHLL---TTATLEEKVPMWIR 52
GR E++ R ++ L V+ A GS ++ G T L T +P +
Sbjct: 53 GRDEDEDRLLTARTDLQTGVTPSASGSAYLELSSGAVAGTSGLKLSCTVHGPRALPRSMP 112
Query: 53 NTKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQI 112
+ H ++ P +T R + +++ + +LR + +
Sbjct: 113 FSPHLILSTHVKYAPFATKERRGYLRDT-----SERDLAVHLETSLRGAILGERWPKSGV 167
Query: 113 IIDCDVIQA-----------------DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQ 155
I VI+A + +T A AL D D +
Sbjct: 168 DIVVSVIEADQDRSAPEQDPAEELWGMMNVLSGCVTVASAALADAGIDCVDTVAGGVAAL 227
Query: 156 VLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAER-----AT 210
V + S + + + + + + +
Sbjct: 228 VEETAAEQASPTAEHVLVADPVPAEHGRILAACCVAYLPNRDEVTNLWLKGDMPPSVDGA 287
Query: 211 FSQDHFFAMLNLAKDRIADLIKLQKDV 237
L+ A+ ++ ++
Sbjct: 288 LQLQMIDQALHAARQADQVIVAALQET 314
>gi|84998004|ref|XP_953723.1| 3' exonuclease, exosome component [Theileria annulata]
gi|65304720|emb|CAI73045.1| 3' exonuclease, exosome component, putative [Theileria annulata]
Length = 254
Score = 56.4 bits (134), Expect = 4e-06, Method: Composition-based stats.
Identities = 38/234 (16%), Positives = 70/234 (29%), Gaps = 21/234 (8%)
Query: 7 QENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGML 66
N++R + + S GSC++ G+T L T +
Sbjct: 12 SFNELRPLEIKMSTSSTFSGSCIINLGNTIAKCLVNLP------------KISTKKASTE 59
Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
+ + +I + L S+ I V DGG
Sbjct: 60 YGQFTLELTSNYLFHTPKYLETLKSHIIE-TFERHILLQNYPSQIIEAYIIVSNDDGGLL 118
Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
A I G +AL DC + D + K H + G+ + +D
Sbjct: 119 PALIMGMCLALIDCGIQVYD-VISACSVCIFKDHDGNLVTGLDFNKTELSYYQSKDPYFT 177
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIA----DLIKLQKD 236
V + ++ ++ +S +H L +A+ +L K+ K+
Sbjct: 178 VVNLGYCCNLRNVAFLESKGN---YSAEHIGKALEVAEVACNLISGELFKILKE 228
>gi|298713749|emb|CBJ33722.1| 3'-5'-exoribonuclease/ RNA binding [Ectocarpus siliculosus]
Length = 174
Score = 56.4 bits (134), Expect = 4e-06, Method: Composition-based stats.
Identities = 32/152 (21%), Positives = 52/152 (34%), Gaps = 9/152 (5%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEG--SCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWI 59
R GRQ MR + + V AEG S ++ G T +L T E VP + G++
Sbjct: 26 RADGRQLGDMRLLRM---VFARAEGQASAEIQLGRTRVLGVVTGEV-VPPFPDRPTEGFL 81
Query: 60 TAEYGMLPRSTGNRVKREAVSGR-QGGRSQEIQRMIGRALRSVVDLSALGS--RQIIIDC 116
+ P + + ++ + R EI +AL + G Q+ D
Sbjct: 82 HFNVELGPMAAASVGEQRNSPLSVEIARVIEIGVRDSQALDTEALCIIGGEKVWQLRCDV 141
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCS 148
++ G A AL +
Sbjct: 142 HILDHGGNLIDACTLATMAALRHFRRPEPASW 173
>gi|70944649|ref|XP_742234.1| exoribonuclease PH [Plasmodium chabaudi chabaudi]
gi|56521094|emb|CAH75418.1| exoribonuclease PH, putative [Plasmodium chabaudi chabaudi]
Length = 281
Score = 56.4 bits (134), Expect = 4e-06, Method: Composition-based stats.
Identities = 44/264 (16%), Positives = 81/264 (30%), Gaps = 29/264 (10%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+R+ GR R I + + + A+GS V + +++ L +P + G++
Sbjct: 15 IRVDGRTLLTYRTIEINKNILVSADGSSSVMNEENNVICGIKLSL-LPPDQNSIDEGFVN 73
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
+ NR+K+E + + + V S I I+ V+
Sbjct: 74 LQIDCPASVASNRIKKEHLEIMTSIIYDLCIKNNIDKKKLCVLPSK-FVWGIDINVMVLN 132
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKF----------------------QLSQVLK 158
GG +VAL+D + K +L
Sbjct: 133 GGGGLLDIISIAIYVALNDMNIPVVKAPKKIDELNMFHNTKSKEYELEIVENEKLPFPCD 192
Query: 159 GHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDH--F 216
IS G + I D+ E+ ++ +T SG V + S +
Sbjct: 193 NIPICISIGEINNKYIYDMSKIEEELVENVFVVAVTSSGKCVAFH---KLYGISMEISSI 249
Query: 217 FAMLNLAKDRIADLIKLQKDVISN 240
M + +L K + I
Sbjct: 250 LNMSENSVQISQNLFKKINEAIEK 273
>gi|67609743|ref|XP_667059.1| polymyositis/scleroderma autoantigen 1 [Cryptosporidium hominis
TU502]
gi|54658150|gb|EAL36827.1| polymyositis/scleroderma autoantigen 1 [Cryptosporidium hominis]
Length = 408
Score = 56.4 bits (134), Expect = 4e-06, Method: Composition-based stats.
Identities = 43/273 (15%), Positives = 75/273 (27%), Gaps = 43/273 (15%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+RL GR N+ R + + G V G TH+L+ E P R + G+I+
Sbjct: 13 LRLDGRTMNEYRNVKINLN---KNYGEVEVNIGRTHVLSVVKSELVAPSQER-SSEGFIS 68
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGR------ALRSVVDLSALGSRQIII 114
+ P S A + EI I R A+ + + G +
Sbjct: 69 FTVDIGPLSIN--PTSHAFRHNRTTLGTEIANYIERTLKETGAIDTEILCILSGVCVWSV 126
Query: 115 DCDVIQADGGTRTAAITGA------------------------WVALHDCLQHMEDCSNK 150
C++ L + + + +
Sbjct: 127 KCEIHVLFDDGNLFDACLMATLSGLKHYRYNEIDVDSFLKKSKCEGLEERDYQRLENTIR 186
Query: 151 FQLSQVLKGHVAAIS------CGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQG 204
H +S G IVD + E+S D + + D + +
Sbjct: 187 KLEMIPFNVHHFPLSISIGYINGKEGLSYIVDPNSDEESISDTIIHISINDKQEVCGISK 246
Query: 205 SAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
A S + + +A L + K
Sbjct: 247 FG-GAKLSLNQINFAIQIATIHSEKLHQEFKKA 278
>gi|291226757|ref|XP_002733360.1| PREDICTED: exosome component 5-like, partial [Saccoglossus
kowalevskii]
Length = 198
Score = 56.0 bits (133), Expect = 4e-06, Method: Composition-based stats.
Identities = 22/156 (14%), Positives = 43/156 (27%), Gaps = 13/156 (8%)
Query: 7 QENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGML 66
++R S + + +GS GDT ++ +V + +
Sbjct: 9 GNLELRSQSCEQNLLSRPDGSATYCQGDTSVIVAVYGPAEVKQSKEFLDKATLEVIFKPK 68
Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
G + +R+I ++V + I I V+ G
Sbjct: 69 VGI-------------PGCSEKFQERLIRNTCETIVLTALHPRSSINIIIQVMHNAGSLL 115
Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVA 162
+ + +AL D M S G +
Sbjct: 116 SCCVNSTCMALLDAGLPMSCLVAAVTCSLSCDGDII 151
>gi|254572173|ref|XP_002493196.1| Protein involved in rRNA processing [Pichia pastoris GS115]
gi|238032994|emb|CAY71017.1| Protein involved in rRNA processing [Pichia pastoris GS115]
gi|328352789|emb|CCA39187.1| exosome complex component RRP45 [Pichia pastoris CBS 7435]
Length = 298
Score = 56.0 bits (133), Expect = 4e-06, Method: Composition-based stats.
Identities = 30/267 (11%), Positives = 74/267 (27%), Gaps = 30/267 (11%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+RL GR+ QMR +++ G LV GD ++ + E P R + +
Sbjct: 17 LRLDGRKPMQMRPLNIEVGPD---YGQMLVTLGDAKVVVRISSEIVTPYEDRPFEGIFQV 73
Query: 61 AEYGMLPRST-----GNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115
+ +R + E + R ++ + ++ S + +
Sbjct: 74 SSELDGMGHPSFNEASHRQEEEVMLSRLIEKAIRRSNALDLESLCIIAGQKCWSVRADVH 133
Query: 116 CDVIQADG-GTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPI 174
+ + + + + + + ++ +C
Sbjct: 134 IIDYDGNMTDIVCIGVIAGLLHFKKPDISIRNGTVILHDMSEREPVPLSVLHIPICVTFQ 193
Query: 175 VDLDYGEDSTIDVD--------------------ANFVMTDSGHIVEVQGSAERATFSQD 214
+ + + D + + + ++ S D
Sbjct: 194 IYSSGSMEDNVKGDGREFVIVDATLKEEALTQGTITLTLNSNKELCQMSKSGGIN-LEVD 252
Query: 215 HFFAMLNLAKDRIADLIKLQKDVISNE 241
++ N A+ + D K KD I +
Sbjct: 253 EILSLTNEAQIIVDDFTKYIKDTIKKD 279
>gi|300123363|emb|CBK24636.2| unnamed protein product [Blastocystis hominis]
Length = 304
Score = 56.0 bits (133), Expect = 4e-06, Method: Composition-based stats.
Identities = 13/43 (30%), Positives = 22/43 (51%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL 43
+R GR + R I ++ A+GS LV+ G+T ++ L
Sbjct: 44 VRPDGRGIDDARGILISYGHIGTADGSSLVRIGETGVICGLKL 86
>gi|312072883|ref|XP_003139269.1| hypothetical protein LOAG_03684 [Loa loa]
gi|307765574|gb|EFO24808.1| hypothetical protein LOAG_03684 [Loa loa]
Length = 224
Score = 56.0 bits (133), Expect = 5e-06, Method: Composition-based stats.
Identities = 39/232 (16%), Positives = 69/232 (29%), Gaps = 27/232 (11%)
Query: 11 MREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRST 70
+R++ A+GSC ++ G T + V R ++ I Y
Sbjct: 16 LRDLKAQLSFLPRADGSCALEQGTTVIWCGINGPGNVSSSKRLSERLVIDILYKHAHGLK 75
Query: 71 GNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAI 130
+ R++G AL+ VD + + ++Q
Sbjct: 76 NSVKIN---------------RLLGAALKHSVDHVHYPRVVLNVTLHLLQEG-------- 112
Query: 131 TGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDAN 190
G A + ++ + G A S G L PI D+
Sbjct: 113 -GCEAAAALNAACLAALDLGIIMNGMFCGITVATSQGNLILDPICPQCCSADAVYTFAFY 171
Query: 191 FVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNEV 242
+S V TF F A LAK AD+ ++++ ++
Sbjct: 172 SSGKESTKTVACDTDG---TFEYGTFEAARTLAKQASADIFLFYREILQRKL 220
>gi|242022707|ref|XP_002431780.1| conserved hypothetical protein [Pediculus humanus corporis]
gi|212517105|gb|EEB19042.1| conserved hypothetical protein [Pediculus humanus corporis]
Length = 191
Score = 55.6 bits (132), Expect = 5e-06, Method: Composition-based stats.
Identities = 21/136 (15%), Positives = 42/136 (30%), Gaps = 13/136 (9%)
Query: 10 QMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRS 69
+MR I +GS L GDT L+ +V T++ + +
Sbjct: 5 EMRNIHCELDPLSRPDGSALFALGDTMTLSAVYGPAEVRPQKLLTENATVEVLFKSKNGV 64
Query: 70 TGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAA 129
+ + + ++ + S I I +Q GG +
Sbjct: 65 -------------PSISDKIKEVSLNNICKTAILSSQHPRTSISIIVQEMQDYGGLLACS 111
Query: 130 ITGAWVALHDCLQHME 145
+ A +AL + ++
Sbjct: 112 VNSACLALLNAGIPLK 127
>gi|328861810|gb|EGG10912.1| hypothetical protein MELLADRAFT_33545 [Melampsora larici-populina
98AG31]
Length = 286
Score = 55.6 bits (132), Expect = 5e-06, Method: Composition-based stats.
Identities = 34/260 (13%), Positives = 74/260 (28%), Gaps = 27/260 (10%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEG-SCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWI 59
+RL GR + R ISL +G S G T + + P G +
Sbjct: 23 LRLDGRATFEQRPISL----LISEDGDSVECSLGRTRVSAHVSATITRPR-PDRPFEGLL 77
Query: 60 TAEYGMLPRSTGNRVKREAVSG-----RQGGRSQEIQRMIGRALRSVVDLSALGSRQIII 114
+ P ++ A R ++ +I R ++ + I +
Sbjct: 78 QVSAEINPLASFVYEIGRASEDEVHLSRLLDKTLVRSGVIDREALCILAGQKV--WCIRV 135
Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQL------SQVLKGHVAAISCGM 168
D + +G A A AL + + + + + + +
Sbjct: 136 DLHFLNDEGNMLDCASVAAIAALQNFRRPDITLVGEEITVHSFDERLPIPLTLHHLPICL 195
Query: 169 LCGYPIVDLDYGEDSTIDVD-------ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLN 221
+ + Y ++ + I + S + ++
Sbjct: 196 TFAFFELPASYILLDPSRLEQQLSTGTMTLTLNAQREICVINKSG-GMPSDVEEIMRVVR 254
Query: 222 LAKDRIADLIKLQKDVISNE 241
+ R+ ++ L K+ IS +
Sbjct: 255 IGSRRVQEVDALIKEQISKK 274
>gi|258572452|ref|XP_002544988.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
gi|237905258|gb|EEP79659.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
Length = 1117
Score = 55.6 bits (132), Expect = 5e-06, Method: Composition-based stats.
Identities = 13/44 (29%), Positives = 23/44 (52%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE 44
+R++GR E Q R +++ +A GS +V+ GD + E
Sbjct: 773 VRINGRTEFQFRPVTVNTGSLTHANGSAVVRIGDMTAVCAVRGE 816
>gi|146420206|ref|XP_001486060.1| hypothetical protein PGUG_01731 [Meyerozyma guilliermondii ATCC
6260]
Length = 312
Score = 55.6 bits (132), Expect = 6e-06, Method: Composition-based stats.
Identities = 37/273 (13%), Positives = 81/273 (29%), Gaps = 41/273 (15%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+R GR+ +++R+ + +S G +++G+T L L E + G T
Sbjct: 30 VRGDGRRIDEIRDPKII--LSPSEYGYVEIEWGNTK-LAVRVLAEIAKPYDDRPFEGIFT 86
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSAL--------GSRQI 112
+ P ++ +G+ + R++ +A+R L +
Sbjct: 87 INTEISPMASPQF-----ENGKNSDDEVLVSRIVEKAIRRSNALDLESLCIVAGSKVWAV 141
Query: 113 IIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQ-------------------- 152
D + + DGG A G VAL + +
Sbjct: 142 RADVNFLDFDGGLIDACALGVMVALQHFRKPDVSIDGESIVVHSMDERQPVALSILHVPL 201
Query: 153 ----LSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAER 208
+ ++D + E+ D + + I++V S
Sbjct: 202 CVSFSFFNPSDIEETVKGDASDEIAVMDATHEEELVRDGSLVVTLNKNREILQVSKSG-G 260
Query: 209 ATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
+ A ++L K+++ +
Sbjct: 261 LPIDAVVLMDLCRKAYTVTSELTDRVKEILKKD 293
>gi|330926139|ref|XP_003301342.1| hypothetical protein PTT_12814 [Pyrenophora teres f. teres 0-1]
gi|311324033|gb|EFQ90557.1| hypothetical protein PTT_12814 [Pyrenophora teres f. teres 0-1]
Length = 347
Score = 55.6 bits (132), Expect = 6e-06, Method: Composition-based stats.
Identities = 11/44 (25%), Positives = 21/44 (47%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE 44
+R +GR N+ R + + GS +V+ G+T ++ E
Sbjct: 39 VRANGRTSNEYRTPGINTGSLTHCNGSAVVRLGNTSVVCGVRAE 82
>gi|226287622|gb|EEH43135.1| 3' exoribonuclease family protein [Paracoccidioides brasiliensis
Pb18]
Length = 439
Score = 55.6 bits (132), Expect = 6e-06, Method: Composition-based stats.
Identities = 12/44 (27%), Positives = 22/44 (50%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE 44
+R++GR Q R +S+ + S +V+ GDT ++ E
Sbjct: 58 LRVNGRSTCQFRPVSVNTGSLTHTNASAVVRTGDTVVVCGVRGE 101
>gi|225678125|gb|EEH16409.1| conserved hypothetical protein [Paracoccidioides brasiliensis Pb03]
Length = 352
Score = 55.6 bits (132), Expect = 6e-06, Method: Composition-based stats.
Identities = 12/44 (27%), Positives = 22/44 (50%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE 44
+R++GR Q R +S+ + S +V+ GDT ++ E
Sbjct: 58 LRVNGRSTCQFRPVSVNTGSLTHTNASAVVRTGDTVVVCGVRGE 101
>gi|320586467|gb|EFW99137.1| 3 exoribonuclease family protein [Grosmannia clavigera kw1407]
Length = 389
Score = 55.6 bits (132), Expect = 6e-06, Method: Composition-based stats.
Identities = 10/43 (23%), Positives = 16/43 (37%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE 44
R +GR + R + A GS V+ T ++ E
Sbjct: 42 RPNGRSPEEARAFDVHTGSLSQAHGSAAVRLDRTRVICGVRAE 84
>gi|115386760|ref|XP_001209921.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
gi|114190919|gb|EAU32619.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
Length = 412
Score = 55.6 bits (132), Expect = 6e-06, Method: Composition-based stats.
Identities = 18/103 (17%), Positives = 35/103 (33%), Gaps = 2/103 (1%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+R +GR +Q R S + GS +V+ GDT + E +
Sbjct: 47 IRANGRAPSQFRVTSANTGSLTHTNGSAVVRIGDTTAVCGVRAE--ILPTEDIASWSVSR 104
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVD 103
+E+ + R K + + S + + A ++
Sbjct: 105 SEFSSAASANNKRRKLDDPTRAPAETSPDDEDADDTAHIQDLN 147
>gi|260782066|ref|XP_002586113.1| hypothetical protein BRAFLDRAFT_109996 [Branchiostoma floridae]
gi|229271204|gb|EEN42124.1| hypothetical protein BRAFLDRAFT_109996 [Branchiostoma floridae]
Length = 153
Score = 55.6 bits (132), Expect = 6e-06, Method: Composition-based stats.
Identities = 19/147 (12%), Positives = 39/147 (26%), Gaps = 13/147 (8%)
Query: 16 LTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGNRVK 75
L V A GS ++ G T ++ ++ T G + E + R +
Sbjct: 12 LNAGVVSQATGSAYIEMGQTKVIAAVYGPREIARREEFTMKGRLCCELKFATFACRRRRQ 71
Query: 76 REAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD--------VIQADGGTRT 127
+ + G ++ +AL V L Q+ +
Sbjct: 72 HIQDNQEKDG-----ALIVLQALEPAVCLDRFPKSQVDVYITVLQDDGSGHCAPPPTDDI 126
Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLS 154
+ + + H +D
Sbjct: 127 VTVPPSHLQGHCAPPPTDDIVTVPPSH 153
>gi|322697336|gb|EFY89117.1| 3' exoribonuclease family protein [Metarhizium acridum CQMa 102]
Length = 339
Score = 55.6 bits (132), Expect = 6e-06, Method: Composition-based stats.
Identities = 13/43 (30%), Positives = 21/43 (48%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE 44
R +GR +Q+R ++ + GS LV+ GDT + E
Sbjct: 36 RSNGRAPDQLRLTTVNLSSLSHPHGSSLVRMGDTTAICGVRGE 78
>gi|261192783|ref|XP_002622798.1| 3' exoribonuclease [Ajellomyces dermatitidis SLH14081]
gi|239589280|gb|EEQ71923.1| 3' exoribonuclease [Ajellomyces dermatitidis SLH14081]
Length = 436
Score = 55.6 bits (132), Expect = 6e-06, Method: Composition-based stats.
Identities = 12/44 (27%), Positives = 21/44 (47%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE 44
+R++GR +Q R S+ + S +V+ GDT + E
Sbjct: 66 LRVNGRTPSQFRPASINIGSLTHTNASAVVRMGDTVAVCGVRGE 109
>gi|315055833|ref|XP_003177291.1| 3' exoribonuclease [Arthroderma gypseum CBS 118893]
gi|311339137|gb|EFQ98339.1| 3' exoribonuclease [Arthroderma gypseum CBS 118893]
Length = 415
Score = 55.2 bits (131), Expect = 7e-06, Method: Composition-based stats.
Identities = 13/44 (29%), Positives = 23/44 (52%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE 44
+R++GR + Q R S++ + GS +V+ GDT + E
Sbjct: 52 VRINGRTDAQFRPASVSTGSLTHTNGSAVVRMGDTAAVCGVRAE 95
>gi|327355316|gb|EGE84173.1| 3' exoribonuclease [Ajellomyces dermatitidis ATCC 18188]
Length = 436
Score = 55.2 bits (131), Expect = 7e-06, Method: Composition-based stats.
Identities = 12/44 (27%), Positives = 21/44 (47%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE 44
+R++GR +Q R S+ + S +V+ GDT + E
Sbjct: 66 LRVNGRTPSQFRPASINIGSLTHTNASAVVRMGDTVAVCGVRGE 109
>gi|325088441|gb|EGC41751.1| exosome complex exonuclease RRP45 [Ajellomyces capsulatus H88]
Length = 293
Score = 55.2 bits (131), Expect = 7e-06, Method: Composition-based stats.
Identities = 32/223 (14%), Positives = 69/223 (30%), Gaps = 20/223 (8%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+RL GR +Q+R ++++ G ++ G T ++ + E P R +
Sbjct: 23 VRLDGRALDQLRPLTVSF---SDEYGHVKLQLGKTSVVVRISAEVTKPRSERENDGIFTV 79
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
+ S R++ Q R+ + AL + A G
Sbjct: 80 SVELNDMASPAYETGRQSELESQLVRTLDRIIRRSNALDTESLCIAAGK--NCWHVRADV 137
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD--LD 178
+ + +A+ L + A + G + Y +
Sbjct: 138 HVVDSDGGLVDSCCLAIMTGL-------------LHFRLPEAVVREGRVTVYRPEERVPS 184
Query: 179 YGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLN 221
+ + + F M D G I+ + +++ S+ L+
Sbjct: 185 PLNLTKLPLSTTFNMYDEGRIIVLDATSKEEAVSEGSLIIALD 227
>gi|212535542|ref|XP_002147927.1| 3' exoribonuclease family protein [Penicillium marneffei ATCC
18224]
gi|210070326|gb|EEA24416.1| 3' exoribonuclease family protein [Penicillium marneffei ATCC
18224]
Length = 333
Score = 55.2 bits (131), Expect = 7e-06, Method: Composition-based stats.
Identities = 37/275 (13%), Positives = 69/275 (25%), Gaps = 44/275 (16%)
Query: 6 RQENQMREISLTRRVSKYAEGSCLVKFG------DT-----------HLLTTATLEEKVP 48
R+ ++R+I L + A GS ++ +T + +P
Sbjct: 38 RKPTELRKIFLKTGLIPSASGSSYLEIEPARRPTNTPKSLIAPATSLKIACAVHGPRPLP 97
Query: 49 MWIRNTKHGWITAEYGMLPRSTGNRVKR-EAVSGRQGGRSQEIQRMI--------GRALR 99
+ + +T P + R S R G E AL
Sbjct: 98 RSANYSPNLLLTTHVKYAPFAHRRRKGHIRDASERDLGVHLETAIRGAIIAERWPKSALD 157
Query: 100 SVVDLSALGSRQIIIDCDVIQA----DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQ 155
+ + + D IT A A+ D D +
Sbjct: 158 VTITVLEAEDDRWWGDASGSSDASWGMMNVLAGCITAAAAAIADARIDCLDLVAGGVAAL 217
Query: 156 VLKGHVAAISCGMLCGYPIVDLDYGEDSTID---VDANFVMTDSGHIVEVQG---SAERA 209
V S P + LD + + I E+ ++E A
Sbjct: 218 VADDQQEDKSTEGGVSPPRLFLDPDPSEHKNIVAACVVGYLPGRDEITEIWLKGDTSEVA 277
Query: 210 TFSQDH--------FFAMLNLAKDRIADLIKLQKD 236
+ + ++ A+ + L K+
Sbjct: 278 STTPGEKMSGHDVLIDGAIDAARAARSVLAAAVKE 312
>gi|195388798|ref|XP_002053065.1| GJ23674 [Drosophila virilis]
gi|194151151|gb|EDW66585.1| GJ23674 [Drosophila virilis]
Length = 240
Score = 55.2 bits (131), Expect = 7e-06, Method: Composition-based stats.
Identities = 28/233 (12%), Positives = 61/233 (26%), Gaps = 29/233 (12%)
Query: 9 NQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPR 68
+++RE+ +GS + G T ++ +V + + ++ Y
Sbjct: 12 DKLREMHCKFNALSRCDGSVMYSQGATVVIAAVLGPIEVKTQNLSIEGSYLECNYRPKAG 71
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
+ + + R + RA SV D +
Sbjct: 72 LPQVKERIREAAIRDVLELALLSEAYPRAKMSVQVQELEDR----GSIDACALNAACLAM 127
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
I G + H ++D D E
Sbjct: 128 LIGGLPLKYSFAAVHCIINEQGE---------------------FVLDPDQNETLHQQAS 166
Query: 189 ANFVMTD-SGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
F G+++ VQ + F F + + + A++ + + I+
Sbjct: 167 FTFAFDSVDGNLLLVQ---TKGAFKIAQFNDIECICRAASAEIFEFYRRNIAK 216
>gi|239610182|gb|EEQ87169.1| 3' exoribonuclease [Ajellomyces dermatitidis ER-3]
Length = 435
Score = 55.2 bits (131), Expect = 7e-06, Method: Composition-based stats.
Identities = 12/44 (27%), Positives = 21/44 (47%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE 44
+R++GR +Q R S+ + S +V+ GDT + E
Sbjct: 66 LRVNGRTPSQFRPASINIGSLTHTNASAVVRMGDTVAVCGVRGE 109
>gi|83314648|ref|XP_730452.1| 3' exoribonuclease domain 1 [Plasmodium yoelii yoelii str. 17XNL]
gi|23490177|gb|EAA22017.1| 3' exoribonuclease family, domain 1, putative [Plasmodium yoelii
yoelii]
Length = 281
Score = 55.2 bits (131), Expect = 7e-06, Method: Composition-based stats.
Identities = 44/262 (16%), Positives = 82/262 (31%), Gaps = 29/262 (11%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+R+ GR R I + + + A+GS V + +++ L +P + G++
Sbjct: 15 IRVDGRTLLTYRTIEINKSILVSADGSSSVMNEENNVICGIKLSL-LPPEPHSIDEGFVN 73
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
+ NR+K+E + + + V S I I+ V+
Sbjct: 74 LQIDCPASVASNRIKKEHLQIMTSIIYDLCIKNNIDKKKLCVLPSK-FVWGIDINVMVLN 132
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKF----------------------QLSQVLK 158
GG +VAL+D + K +L +
Sbjct: 133 GGGGLLDIISIAIYVALNDMNIPVVKAPKKIDELNMFHNTKSKEYELEIVENEKLPFPCE 192
Query: 159 GHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDH--F 216
IS G + I D+ E+ ++ +T SG V + S +
Sbjct: 193 NIPICISIGEINNKYIYDMSKIEEELVENVFVVAVTSSGKCVAFH---KLYGISMEVSSI 249
Query: 217 FAMLNLAKDRIADLIKLQKDVI 238
M + +L K + I
Sbjct: 250 LNMSENSVKISQNLFKKINEAI 271
>gi|189198756|ref|XP_001935715.1| 3' exoribonuclease family protein [Pyrenophora tritici-repentis
Pt-1C-BFP]
gi|187982814|gb|EDU48302.1| 3' exoribonuclease family protein [Pyrenophora tritici-repentis
Pt-1C-BFP]
Length = 347
Score = 55.2 bits (131), Expect = 7e-06, Method: Composition-based stats.
Identities = 10/41 (24%), Positives = 20/41 (48%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTA 41
+R +GR N+ R + + GS +V+ G+T ++
Sbjct: 39 VRANGRTSNEYRTPGINTGSLTHCNGSAVVRLGNTSVVCGV 79
>gi|122920910|pdb|2NN6|D Chain D, Structure Of The Human Rna Exosome Composed Of Rrp41,
Rrp45, Rrp46, Rrp43, Mtr3, Rrp42, Csl4, Rrp4, And Rrp40
Length = 237
Score = 55.2 bits (131), Expect = 7e-06, Method: Composition-based stats.
Identities = 22/145 (15%), Positives = 39/145 (26%), Gaps = 13/145 (8%)
Query: 11 MREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRST 70
+R + + + +GS GDT +L +V +
Sbjct: 30 LRHFACEQNLLSRPDGSASFLQGDTSVLAGVYGPAEV---------KVSKEIFNKATLEV 80
Query: 71 GNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAI 130
R K + R + I +VV + I + V+ G +
Sbjct: 81 ILRPKIGLPGVAEKSRERL----IRNTCEAVVLGTLHPRTSITVVLQVVSDAGSLLACCL 136
Query: 131 TGAWVALHDCLQHMEDCSNKFQLSQ 155
A +AL D M +
Sbjct: 137 NAACMALVDAGVPMRALFCGVACAL 161
>gi|295662695|ref|XP_002791901.1| 3' exoribonuclease family protein [Paracoccidioides brasiliensis
Pb01]
gi|226279553|gb|EEH35119.1| 3' exoribonuclease family protein [Paracoccidioides brasiliensis
Pb01]
Length = 436
Score = 55.2 bits (131), Expect = 7e-06, Method: Composition-based stats.
Identities = 12/44 (27%), Positives = 22/44 (50%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE 44
+R++GR Q R +S+ + S +V+ GDT ++ E
Sbjct: 58 LRVNGRSTCQFRPVSVNTGSLTHTNASAVVRTGDTVVVCGVRGE 101
>gi|302420353|ref|XP_003008007.1| exosome complex exonuclease RRP43 [Verticillium albo-atrum
VaMs.102]
gi|261353658|gb|EEY16086.1| exosome complex exonuclease RRP43 [Verticillium albo-atrum
VaMs.102]
Length = 340
Score = 55.2 bits (131), Expect = 8e-06, Method: Composition-based stats.
Identities = 12/43 (27%), Positives = 21/43 (48%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE 44
R +GR ++ R ++ +A GS LV+ GD ++ E
Sbjct: 38 RSNGRAPHEARTPNINTSTLTHAHGSALVRIGDNTVICGIRGE 80
>gi|187469539|gb|AAI67023.1| Exosc5 protein [Rattus norvegicus]
Length = 233
Score = 55.2 bits (131), Expect = 8e-06, Method: Composition-based stats.
Identities = 22/145 (15%), Positives = 39/145 (26%), Gaps = 13/145 (8%)
Query: 11 MREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRST 70
+R + + + +GS GDT +L +V +
Sbjct: 26 LRHFACEQNLLSRPDGSASFLQGDTSVLAGVYGPAEV---------KVSKEIFNKATLEV 76
Query: 71 GNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAI 130
R K + R + I +VV + I + V+ G +
Sbjct: 77 ILRPKIGLPGVAEKSRERL----IRNTCEAVVLGALHPRTSITVVLQVVSDTGSLLACCL 132
Query: 131 TGAWVALHDCLQHMEDCSNKFQLSQ 155
A +AL D M +
Sbjct: 133 NAACMALVDAGVPMRALFCGVTCAL 157
>gi|170067610|ref|XP_001868550.1| mRNA transport regulator 3 [Culex quinquefasciatus]
gi|167863714|gb|EDS27097.1| mRNA transport regulator 3 [Culex quinquefasciatus]
Length = 173
Score = 55.2 bits (131), Expect = 8e-06, Method: Composition-based stats.
Identities = 14/76 (18%), Positives = 33/76 (43%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R RQ+ + R+ + V A+GS ++ G+T ++ + ++P + G +
Sbjct: 43 RKCNRQDTESRKYFMKLGVVSTAKGSAYLELGNTKVIVSVFDPREIPKQNTFRELGELYC 102
Query: 62 EYGMLPRSTGNRVKRE 77
+ P + +R +
Sbjct: 103 DLKFSPFACVHRKNPQ 118
>gi|312596907|ref|NP_001100963.2| exosome complex exonuclease RRP46 [Rattus norvegicus]
Length = 235
Score = 55.2 bits (131), Expect = 8e-06, Method: Composition-based stats.
Identities = 22/145 (15%), Positives = 39/145 (26%), Gaps = 13/145 (8%)
Query: 11 MREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRST 70
+R + + + +GS GDT +L +V +
Sbjct: 28 LRHFACEQNLLSRPDGSASFLQGDTSVLAGVYGPAEV---------KVSKEIFNKATLEV 78
Query: 71 GNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAI 130
R K + R + I +VV + I + V+ G +
Sbjct: 79 ILRPKIGLPGVAEKSRERL----IRNTCEAVVLGALHPRTSITVVLQVVSDTGSLLACCL 134
Query: 131 TGAWVALHDCLQHMEDCSNKFQLSQ 155
A +AL D M +
Sbjct: 135 NAACMALVDAGVPMRALFCGVTCAL 159
>gi|73947485|ref|XP_852838.1| PREDICTED: similar to Exosome complex exonuclease RRP46 (Ribosomal
RNA processing protein 46) (Exosome component 5) (p12B)
(Chronic myelogenous leukemia tumor antigen 28) [Canis
familiaris]
Length = 235
Score = 55.2 bits (131), Expect = 8e-06, Method: Composition-based stats.
Identities = 22/145 (15%), Positives = 39/145 (26%), Gaps = 13/145 (8%)
Query: 11 MREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRST 70
+R + + + +GS GDT +L +V +
Sbjct: 28 LRHFACEQNLLSRPDGSASFLQGDTSVLAGVYGPAEV---------KVSKEIFNKATLEV 78
Query: 71 GNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAI 130
R K + R + I +VV + I + V+ G +
Sbjct: 79 ILRPKIGLPGVAEKSRERL----IRNTCEAVVLGTLHPRTSITVVLQVVSDAGSLLACCL 134
Query: 131 TGAWVALHDCLQHMEDCSNKFQLSQ 155
A +AL D M +
Sbjct: 135 NAACMALVDAGVPMRALFCGVTCAL 159
>gi|47174864|ref|NP_064543.3| exosome complex component RRP46 [Homo sapiens]
gi|14285757|sp|Q9NQT4|EXOS5_HUMAN RecName: Full=Exosome complex component RRP46; AltName:
Full=Chronic myelogenous leukemia tumor antigen 28;
AltName: Full=Exosome component 5; AltName:
Full=Ribosomal RNA-processing protein 46; AltName:
Full=p12B
gi|8927592|gb|AAF82135.1|AF281134_1 exosome component Rrp46 [Homo sapiens]
gi|208966242|dbj|BAG73135.1| exosome component 5 [synthetic construct]
Length = 235
Score = 55.2 bits (131), Expect = 8e-06, Method: Composition-based stats.
Identities = 22/145 (15%), Positives = 39/145 (26%), Gaps = 13/145 (8%)
Query: 11 MREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRST 70
+R + + + +GS GDT +L +V +
Sbjct: 28 LRHFACEQNLLSRPDGSASFLQGDTSVLAGVYGPAEV---------KVSKEIFNKATLEV 78
Query: 71 GNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAI 130
R K + R + I +VV + I + V+ G +
Sbjct: 79 ILRPKIGLPGVAEKSRERL----IRNTCEAVVLGTLHPRTSITVVLQVVSDAGSLLACCL 134
Query: 131 TGAWVALHDCLQHMEDCSNKFQLSQ 155
A +AL D M +
Sbjct: 135 NAACMALVDAGVPMRALFCGVACAL 159
>gi|242781432|ref|XP_002479799.1| 3' exoribonuclease family protein [Talaromyces stipitatus ATCC
10500]
gi|218719946|gb|EED19365.1| 3' exoribonuclease family protein [Talaromyces stipitatus ATCC
10500]
Length = 407
Score = 55.2 bits (131), Expect = 8e-06, Method: Composition-based stats.
Identities = 12/44 (27%), Positives = 19/44 (43%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE 44
+R +GR + R S + GS +V+ GDT + E
Sbjct: 44 IRPNGRAPLEFRATSANLGSLSHTNGSAVVRIGDTAAVCGVRAE 87
>gi|39970415|ref|XP_366598.1| hypothetical protein MGG_02674 [Magnaporthe oryzae 70-15]
gi|149209849|ref|XP_001522299.1| hypothetical protein MGCH7_ch7g406 [Magnaporthe oryzae 70-15]
gi|86196361|gb|EAQ70999.1| hypothetical protein MGCH7_ch7g406 [Magnaporthe oryzae 70-15]
gi|145017527|gb|EDK01890.1| hypothetical protein MGG_02674 [Magnaporthe oryzae 70-15]
Length = 357
Score = 55.2 bits (131), Expect = 8e-06, Method: Composition-based stats.
Identities = 12/43 (27%), Positives = 24/43 (55%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE 44
R +GR + + R +++ +A+GS +V+ GDT ++ E
Sbjct: 43 RTNGRAQTESRVVNVNTGSLSHAQGSAVVRCGDTTVICGVRAE 85
>gi|308807186|ref|XP_003080904.1| putative polymyositis/scleroderma autoantigen (ISS) [Ostreococcus
tauri]
gi|116059365|emb|CAL55072.1| putative polymyositis/scleroderma autoantigen (ISS) [Ostreococcus
tauri]
Length = 869
Score = 54.8 bits (130), Expect = 9e-06, Method: Composition-based stats.
Identities = 37/251 (14%), Positives = 69/251 (27%), Gaps = 36/251 (14%)
Query: 1 MRLSGRQENQMR--------EISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIR 52
R+ GR ++R +I ++ +G C+V+ G T T T + + P
Sbjct: 443 FRIDGRAPGEVRGGGDTFENQIEISFGPL---DGVCVVRLGHTLACATTTGQLERPASAG 499
Query: 53 NTKHGWITAEYGMLPRSTGNR------VKREAVSGRQGGRSQEIQRMIGRALRSVVDLSA 106
+ G + + + + R G E GRA+
Sbjct: 500 ASAEGSLRVDVEFSSGACTGFARDGRASRETRQRSRDLGMLLERGLKDGRAVDVESLCVL 559
Query: 107 LGSRQIIIDCDVIQADGGTRTAAITG--------------AWVALHDCLQHMEDCSNKFQ 152
G R I C V A + V + + + +
Sbjct: 560 AGKRTWAITCSVTILAHDGNLAGVASLAACGSLMTYRRPECSVDPNSGIVTVHSVDAREA 619
Query: 153 LSQVLKGHVAAISCGMLCGYPIV---DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERA 209
++ + A + P + D E+ T D V+ + V S
Sbjct: 620 IALNMHHFPIASTYCFFDEAPGLAVADPTLEEEITADGSVVCVVNSLEEVCAVSTSGNG- 678
Query: 210 TFSQDHFFAML 220
S + +
Sbjct: 679 -VSGEDVKQCV 688
>gi|332242411|ref|XP_003270380.1| PREDICTED: exosome complex exonuclease RRP46-like [Nomascus
leucogenys]
Length = 235
Score = 54.8 bits (130), Expect = 9e-06, Method: Composition-based stats.
Identities = 22/145 (15%), Positives = 39/145 (26%), Gaps = 13/145 (8%)
Query: 11 MREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRST 70
+R + + + +GS GDT +L +V +
Sbjct: 28 LRHFACEQNLLSRPDGSASFLQGDTSVLAGVYGPAEV---------KVSKEIFNKATLEV 78
Query: 71 GNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAI 130
R K + R + I +VV + I + V+ G +
Sbjct: 79 ILRPKIRLPGVAEKSRERL----IRNTCEAVVLGTLHPRTSITVVLQVVSDAGSLLACCL 134
Query: 131 TGAWVALHDCLQHMEDCSNKFQLSQ 155
A +AL D M +
Sbjct: 135 NAACMALVDAGVPMRALFCGVTCAL 159
>gi|268532254|ref|XP_002631255.1| C. briggsae CBR-CRN-5 protein [Caenorhabditis briggsae]
gi|187036905|emb|CAP23570.1| CBR-CRN-5 protein [Caenorhabditis briggsae AF16]
Length = 214
Score = 54.8 bits (130), Expect = 9e-06, Method: Composition-based stats.
Identities = 37/237 (15%), Positives = 67/237 (28%), Gaps = 31/237 (13%)
Query: 5 GRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYG 64
GR +RE+ K A+GS G T + + + V N + + Y
Sbjct: 3 GR----LREMRCELSFLKNADGSACFSQGSTCIWASCSGPGDVHASKANEEAMTLDISY- 57
Query: 65 MLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGG 124
+ + + +I L ++L +++ IQ DG
Sbjct: 58 ----------RANCGDNKFS----VLNNIIQSTLAKAINLELFPHTGLVVTIHGIQDDGS 103
Query: 125 TRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDST 184
++ GA AL D E + +V + ST
Sbjct: 104 MGAVSLNGACFALLDNGMPFETVFCGVLIVRVKDELI-----------IDPTAKQEAAST 152
Query: 185 IDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
V G EV + A +LA+ + + + V+ +
Sbjct: 153 GKVLFAVCKGTDG-FPEVCSMDVIGNWDYLQLEAAWSLAQPSASAIFEFYTSVMKRK 208
>gi|281340717|gb|EFB16301.1| hypothetical protein PANDA_012923 [Ailuropoda melanoleuca]
Length = 206
Score = 54.8 bits (130), Expect = 1e-05, Method: Composition-based stats.
Identities = 23/145 (15%), Positives = 39/145 (26%), Gaps = 13/145 (8%)
Query: 11 MREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRST 70
+R + + + +GS GDT +L +V +
Sbjct: 28 LRHFACEQNLLSRPDGSASFLQGDTSVLAGVYGPAEV---------KVSKEIFNKATLEV 78
Query: 71 GNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAI 130
R K + R + I +VV + I + VI G +
Sbjct: 79 ILRPKIGLPGVAEKSRERL----IRNTCEAVVLGTLHPRTSITVVLQVISDAGSLLACCL 134
Query: 131 TGAWVALHDCLQHMEDCSNKFQLSQ 155
A +AL D M +
Sbjct: 135 NAACMALVDAGVPMRALFCGVTCAL 159
>gi|134080652|emb|CAK41317.1| unnamed protein product [Aspergillus niger]
Length = 285
Score = 54.8 bits (130), Expect = 1e-05, Method: Composition-based stats.
Identities = 36/246 (14%), Positives = 69/246 (28%), Gaps = 12/246 (4%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+R +GR +Q R S + GS +V+ G T + ++ + H
Sbjct: 43 IRANGRAPSQFRVTSANTGSLTHTNGSAVVRVGGTTAVC---GDDAEVEDPEDETHIQQL 99
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALG-SRQIIIDCDVI 119
+ +Q + I L S + + ID +I
Sbjct: 100 NLLVPNLSLSTGCAPGFVPGAPPSALAQSLSHKILNLLHSTKLEKEIKAFWVLYIDIMII 159
Query: 120 QADGGTRTAAITGAWVALHDCLQHM----EDCSNKFQLSQVLKGHVAAISCGMLCGYPIV 175
G AA AL D D V + ++
Sbjct: 160 SLAGNPFDAAWASVLAALRDTKLPRAWWDVDNEMVVCSDAVSESQKLSLRGLPRRWILAD 219
Query: 176 DLDYGEDSTIDVDANFVMTDSG--HIVEVQGSAERATFSQD--HFFAMLNLAKDRIADLI 231
Y E + + V + G +Q + ++ D A+++++ R L
Sbjct: 220 PDGYEEGLSQERVCIVVDKEQGGKGKTVIQNMEKNGGWAVDGKELKALVDISAQRWEQLK 279
Query: 232 KLQKDV 237
+ +
Sbjct: 280 HILEQC 285
>gi|14043511|gb|AAH07742.1| Exosome component 5 [Homo sapiens]
gi|78394993|gb|AAI07697.1| Exosome component 5 [Homo sapiens]
gi|119577442|gb|EAW57038.1| exosome component 5 [Homo sapiens]
gi|325463845|gb|ADZ15693.1| exosome component 5 [synthetic construct]
Length = 235
Score = 54.8 bits (130), Expect = 1e-05, Method: Composition-based stats.
Identities = 22/145 (15%), Positives = 39/145 (26%), Gaps = 13/145 (8%)
Query: 11 MREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRST 70
+R + + + +GS GDT +L +V +
Sbjct: 28 LRHFACEQNLLSRPDGSASFLQGDTSVLAGVYGPAEV---------KVSKEIFNKATLEV 78
Query: 71 GNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAI 130
R K + R + I +VV + I + V+ G +
Sbjct: 79 ILRPKIGLPGVAEKSRERL----IRNTCEAVVLGTLHPRTSITVVLQVVSDAGSLLACCL 134
Query: 131 TGAWVALHDCLQHMEDCSNKFQLSQ 155
A +AL D M +
Sbjct: 135 NAACMALVDAGVPMRALFCGVACAL 159
>gi|317150198|ref|XP_001823860.2| 3' exoribonuclease family protein [Aspergillus oryzae RIB40]
Length = 409
Score = 54.8 bits (130), Expect = 1e-05, Method: Composition-based stats.
Identities = 15/85 (17%), Positives = 25/85 (29%), Gaps = 2/85 (2%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+R +GR +Q R S + GS +V+ GDT + E +
Sbjct: 47 IRANGRAPSQFRVTSANTGSLTHTNGSAVVRLGDTTAVCGVRAE--ILHTEDIASWSVSR 104
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGG 85
R K + +
Sbjct: 105 PPPASSSTPANKRRKLTDPTAKPSE 129
>gi|83772599|dbj|BAE62727.1| unnamed protein product [Aspergillus oryzae]
Length = 414
Score = 54.8 bits (130), Expect = 1e-05, Method: Composition-based stats.
Identities = 15/85 (17%), Positives = 25/85 (29%), Gaps = 2/85 (2%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+R +GR +Q R S + GS +V+ GDT + E +
Sbjct: 47 IRANGRAPSQFRVTSANTGSLTHTNGSAVVRLGDTTAVCGVRAE--ILHTEDIASWSVSR 104
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGG 85
R K + +
Sbjct: 105 PPPASSSTPANKRRKLTDPTAKPSE 129
>gi|50546251|ref|XP_500645.1| YALI0B08514p [Yarrowia lipolytica]
gi|49646511|emb|CAG82887.1| YALI0B08514p [Yarrowia lipolytica]
Length = 299
Score = 54.8 bits (130), Expect = 1e-05, Method: Composition-based stats.
Identities = 28/265 (10%), Positives = 69/265 (26%), Gaps = 31/265 (11%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
RL GR + R + +T G + G T ++ + E P R + ++
Sbjct: 19 RLDGRSMEEQRPMEVTFG---SQFGHVELTMGKTKVVVRISAEITKPNERRPFEGIFVVH 75
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQI--IIDCDVI 119
S ++ + E AL G + D +
Sbjct: 76 TDIGSMASPIFENNHQSEQEIMISQVVEKAVRRSGALDLESLCIVAGKKCWEIRADVHYL 135
Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLK----------GHVAAISCGML 169
DGG A L+ + D ++ +++ G+
Sbjct: 136 DFDGGLVDATCAAVMAGLYHFKKPDVDVDGGAVTVCDMEERHPVALSVLHLPVSVTYGLF 195
Query: 170 CGYPIVDLDYGEDST-----------IDVDANFVMTDSGHIVEVQGSAERATFSQD--HF 216
+ + + + + + I ++ ++ + S +
Sbjct: 196 ELKNDETNEVEKVECVLDCTAIERQVQNAEITITINKNRDICQI---SKPSGVSIEGYRI 252
Query: 217 FAMLNLAKDRIADLIKLQKDVISNE 241
+ A + ++ + +
Sbjct: 253 VELCEKAFQEALKVTEMIDKALKED 277
>gi|50288139|ref|XP_446498.1| hypothetical protein [Candida glabrata CBS 138]
gi|49525806|emb|CAG59425.1| unnamed protein product [Candida glabrata]
Length = 233
Score = 54.8 bits (130), Expect = 1e-05, Method: Composition-based stats.
Identities = 24/230 (10%), Positives = 65/230 (28%), Gaps = 9/230 (3%)
Query: 13 EISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGN 72
+I + + +GS + T++L T + +
Sbjct: 4 DIVVELGLLSEVDGSAKLLMNSTNVLCAVTGPVEPKARQELPTEMALEVIVRPAKGVPTP 63
Query: 73 RVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITG 132
R K R + R L + + + +A +
Sbjct: 64 REKYLEDKIRAIFTPLITRHKYPRQLCQITCQIMEAGE------NEQLHNQKELSACVNS 117
Query: 133 AWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFV 192
A +AL + + D + ++ + + ++ TI ++
Sbjct: 118 ALLALVNAGVALNDLAAAVTIAVIDDQSQENKAQYIIGPSDEELEKSSSVHTIAMEVGDN 177
Query: 193 MTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNEV 242
++ ++ + F+ F +L L++ +L + V++ +
Sbjct: 178 GKKVKRVLLIESNG---IFNDKVIFDILELSESACLNLCSNWRGVLTKHI 224
>gi|302696003|ref|XP_003037680.1| hypothetical protein SCHCODRAFT_35111 [Schizophyllum commune H4-8]
gi|300111377|gb|EFJ02778.1| hypothetical protein SCHCODRAFT_35111 [Schizophyllum commune H4-8]
Length = 206
Score = 54.8 bits (130), Expect = 1e-05, Method: Composition-based stats.
Identities = 26/180 (14%), Positives = 48/180 (26%), Gaps = 2/180 (1%)
Query: 12 REISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG 71
REIS++ +GS FGDT L + + +V + +
Sbjct: 1 REISVSFDGLARVDGSARFSFGDTTALASVSGPIEVRLAAEQPARATFEVNMRPISNVPA 60
Query: 72 NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAIT 131
K A S R + R L ++ + +R D + A +
Sbjct: 61 TEAKSIAASVRAALSPSIFLQQYPRTLIQLMLQALSPARAKSDDSLLAAMINAGSLALLN 120
Query: 132 GAWVALH--DCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDA 189
A+ C + + V+ +S G + +
Sbjct: 121 AGSAAMRGVVCAVPVARIPSGDSTILVVDPDTDELSRARGTGCFAFLFSAATTDCVWMHW 180
>gi|114677471|ref|XP_001152170.1| PREDICTED: exosome complex component RRP46 isoform 2 [Pan
troglodytes]
Length = 235
Score = 54.8 bits (130), Expect = 1e-05, Method: Composition-based stats.
Identities = 22/145 (15%), Positives = 39/145 (26%), Gaps = 13/145 (8%)
Query: 11 MREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRST 70
+R + + + +GS GDT +L +V +
Sbjct: 28 LRHFACEQNLLSRPDGSASFLQGDTSVLAGVYGPAEV---------KVSKEIFNKATLEV 78
Query: 71 GNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAI 130
R K + R + I +VV + I + V+ G +
Sbjct: 79 ILRPKIGLPGVAEKSRERL----IRNTCEAVVLGTLHPRTSITVVLQVVSDAGSLLACCL 134
Query: 131 TGAWVALHDCLQHMEDCSNKFQLSQ 155
A +AL D M +
Sbjct: 135 NAACMALVDAGVPMRALFCGVTCAL 159
>gi|149722162|ref|XP_001500390.1| PREDICTED: similar to Exosome component 5 [Equus caballus]
Length = 235
Score = 54.8 bits (130), Expect = 1e-05, Method: Composition-based stats.
Identities = 23/145 (15%), Positives = 39/145 (26%), Gaps = 13/145 (8%)
Query: 11 MREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRST 70
+R + + + +GS GDT +L +V +
Sbjct: 28 LRHFACEQNLLSRPDGSASFLQGDTSVLAGVYGPAEV---------KVSKEIFNKATLEV 78
Query: 71 GNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAI 130
R K + R + I +VV + I + VI G +
Sbjct: 79 ILRPKIGLPGVAEKSRERL----IRNTCEAVVLGTLHPRTSITVVLQVISDAGSLLACCL 134
Query: 131 TGAWVALHDCLQHMEDCSNKFQLSQ 155
A +AL D M +
Sbjct: 135 NAACMALVDAGVPMRALFCGVTCAL 159
>gi|46128401|ref|XP_388754.1| hypothetical protein FG08578.1 [Gibberella zeae PH-1]
Length = 336
Score = 54.8 bits (130), Expect = 1e-05, Method: Composition-based stats.
Identities = 12/43 (27%), Positives = 23/43 (53%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE 44
R +GR +++R ++ +A GS +V+ GDT ++ E
Sbjct: 36 RSNGRASDEVRTPTVNASSLSHANGSAVVRVGDTTVICGVRAE 78
>gi|320036434|gb|EFW18373.1| 3' exoribonuclease [Coccidioides posadasii str. Silveira]
Length = 312
Score = 54.5 bits (129), Expect = 1e-05, Method: Composition-based stats.
Identities = 35/283 (12%), Positives = 72/283 (25%), Gaps = 61/283 (21%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKF---------GDT--------HLLTTATL 43
+R R+ ++R+I L V A GS ++ T L+ T
Sbjct: 17 IRS--RKAAELRKIFLKSGVIPSASGSAYLELQPSNDPAYKSKTLIPPSSSLKLVCTVHG 74
Query: 44 EEKVPMWIRNTKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVD 103
+P + + ++ P + R +++ + AL ++
Sbjct: 75 PRPLPRSAPFSPNLILSTHVKFAPFAGRRRRGYIRDM-----YERDLAVHLETALGGMII 129
Query: 104 LSALGSRQIIIDCDVIQAD----------------------GGTRTAAITGAWVALHDCL 141
+ + ++++ + + IT A A+ D
Sbjct: 130 GDRWPKSGLDVTVNILEGEDDRWWGDSLSSGPLGGVDGWGLMNVLASCITVASAAIVDAR 189
Query: 142 QHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID---VDANFVMTDSGH 198
D V + + + LD D + M
Sbjct: 190 IDCLDLLAGGVAGIVEEKDRMSQDTNSKEQGRSLVLDPDPSEHRDIASLCIVGYMPSRDE 249
Query: 199 IVEVQGSAERATFSQDHFFA------------MLNLAKDRIAD 229
I EV + + D +L AK+
Sbjct: 250 ITEVWLKGDVSGVGYDSLMDGAVEAARAAQAIVLEAAKESAQR 292
>gi|58268300|ref|XP_571306.1| hypothetical protein [Cryptococcus neoformans var. neoformans
JEC21]
gi|134113196|ref|XP_774623.1| hypothetical protein CNBF3030 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50257267|gb|EAL19976.1| hypothetical protein CNBF3030 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|57227541|gb|AAW43999.1| conserved hypothetical protein [Cryptococcus neoformans var.
neoformans JEC21]
Length = 332
Score = 54.5 bits (129), Expect = 1e-05, Method: Composition-based stats.
Identities = 14/43 (32%), Positives = 19/43 (44%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE 44
R R R I ++ V A GS VK G+T ++ LE
Sbjct: 28 RNDARPLFASRPIQISYGVFPQANGSSQVKLGETEVVCGIKLE 70
>gi|301776621|ref|XP_002923728.1| PREDICTED: exosome complex exonuclease RRP46-like [Ailuropoda
melanoleuca]
Length = 239
Score = 54.5 bits (129), Expect = 1e-05, Method: Composition-based stats.
Identities = 23/145 (15%), Positives = 39/145 (26%), Gaps = 13/145 (8%)
Query: 11 MREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRST 70
+R + + + +GS GDT +L +V +
Sbjct: 32 LRHFACEQNLLSRPDGSASFLQGDTSVLAGVYGPAEV---------KVSKEIFNKATLEV 82
Query: 71 GNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAI 130
R K + R + I +VV + I + VI G +
Sbjct: 83 ILRPKIGLPGVAEKSRERL----IRNTCEAVVLGTLHPRTSITVVLQVISDAGSLLACCL 138
Query: 131 TGAWVALHDCLQHMEDCSNKFQLSQ 155
A +AL D M +
Sbjct: 139 NAACMALVDAGVPMRALFCGVTCAL 163
>gi|119191880|ref|XP_001246546.1| hypothetical protein CIMG_00317 [Coccidioides immitis RS]
Length = 331
Score = 54.5 bits (129), Expect = 1e-05, Method: Composition-based stats.
Identities = 35/283 (12%), Positives = 73/283 (25%), Gaps = 61/283 (21%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKF---------GDT--------HLLTTATL 43
+R R+ ++R+I L V A GS ++ T L+ T
Sbjct: 36 IRS--RKAAELRKIFLKSGVIPSASGSAYLELQPSNDPAYKSRTLIPPSSSLKLVCTVHG 93
Query: 44 EEKVPMWIRNTKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVD 103
+P + + ++ P + R +++ + AL ++
Sbjct: 94 PRPLPRSAPFSPNLLLSTHVKFAPFAGRRRRGYIRDM-----YERDLAVHLETALGGMII 148
Query: 104 LSALGSRQIIIDCDVIQAD----------------------GGTRTAAITGAWVALHDCL 141
+ + ++++ + + IT A A+ D
Sbjct: 149 GDRWPKSGLDVTVNILEGEDDRWWGDSLSSGPLGGVDGWGSMNVLASCITVASAAIVDAR 208
Query: 142 QHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID---VDANFVMTDSGH 198
D + V + + + LD D + M
Sbjct: 209 IDCLDLLAGGVAAIVEEKDRMSQDTNSKEQGRYLVLDPDPSEHRDIASLCIVGYMPSRDE 268
Query: 199 IVEVQGSAERATFSQDHFFA------------MLNLAKDRIAD 229
I EV + + D +L AK+
Sbjct: 269 ITEVWLKGDVSGVGYDSLMDGAVEAARAAQAIVLEAAKESAQR 311
>gi|312213957|emb|CBX93959.1| similar to 3' exoribonuclease family protein [Leptosphaeria
maculans]
Length = 325
Score = 54.5 bits (129), Expect = 1e-05, Method: Composition-based stats.
Identities = 33/273 (12%), Positives = 66/273 (24%), Gaps = 44/273 (16%)
Query: 6 RQENQMREISLTRRVSKYAEGSCLVKFGD------------THLL---TTATLEEKVPMW 50
R N++R I L + A GS ++ T L + + +P
Sbjct: 39 RGPNELRRIFLQTAIIPSASGSAYLEIPSSSPSSKSTLISPTSSLKITASIQGPKPLPRS 98
Query: 51 IRNTKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALG-- 108
+ +T P T R +++ + ALR V+
Sbjct: 99 AAFSPSLLLTTTVKFAPFGTRQRRGYIR-----DAAERDLGVHLETALRGVIIGERWPKS 153
Query: 109 ------------SRQIIIDCDVIQADG-------GTRTAAITGAWVALHDCLQHMEDCSN 149
D + IT A A+ D D +
Sbjct: 154 GVEVVITILEGDEDGWWGDSESEGTSKGSGWGLLNVLAGCITVASAAIIDAGIDCVDIAC 213
Query: 150 KFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERA 209
+ V + P + A + I E+ +
Sbjct: 214 GGVAAIVRNPDLNDDRELARILDPCPA---EHKDVVAACAIGYLASRDEITEIWMKGDVG 270
Query: 210 TFSQDHFFAMLNLAKDRIADLIKLQKDVISNEV 242
+ A +A + ++ + + ++
Sbjct: 271 PDPDALVEGATHAAVGSLAVVKEVLLEALQAKL 303
>gi|21693160|gb|AAM75154.1| chronic myelogenous leukemia tumor antigen 28 [Homo sapiens]
Length = 268
Score = 54.5 bits (129), Expect = 1e-05, Method: Composition-based stats.
Identities = 22/145 (15%), Positives = 39/145 (26%), Gaps = 13/145 (8%)
Query: 11 MREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRST 70
+R + + + +GS GDT +L +V +
Sbjct: 61 LRHFACEQNLLSRPDGSASFLQGDTSVLAGVYGPAEV---------KVSKEIFNKATLEV 111
Query: 71 GNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAI 130
R K + R + I +VV + I + V+ G +
Sbjct: 112 ILRPKIGLPGVAEKSRERL----IRNTCEAVVLGTLHPRTSITVVLQVVSDAGSLLACCL 167
Query: 131 TGAWVALHDCLQHMEDCSNKFQLSQ 155
A +AL D M +
Sbjct: 168 NAACMALVDAGVPMRALFCGVACAL 192
>gi|213417036|ref|ZP_03350180.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Typhi str. E01-6750]
Length = 247
Score = 54.5 bits (129), Expect = 1e-05, Method: Composition-based stats.
Identities = 13/78 (16%), Positives = 28/78 (35%), Gaps = 1/78 (1%)
Query: 162 AAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLN 221
+ + D+ ED D+D + G I +Q + +++ LN
Sbjct: 2 MGLVKEGDNYVVLSDILGDEDHLGDMDFKVAGSRDG-ISALQMDIKIEGITKEIMQVALN 60
Query: 222 LAKDRIADLIKLQKDVIS 239
AK ++ + + I+
Sbjct: 61 QAKGARLHILGVMEQAIN 78
>gi|260950159|ref|XP_002619376.1| hypothetical protein CLUG_00535 [Clavispora lusitaniae ATCC 42720]
gi|238846948|gb|EEQ36412.1| hypothetical protein CLUG_00535 [Clavispora lusitaniae ATCC 42720]
Length = 305
Score = 54.5 bits (129), Expect = 1e-05, Method: Composition-based stats.
Identities = 36/238 (15%), Positives = 71/238 (29%), Gaps = 12/238 (5%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
RL GR ++MR+ +T +SK G V+ GDT L + E P R + +
Sbjct: 23 FRLDGRALDEMRKPLIT--LSKTEYGYVEVELGDTKLAVRVSCEIGKPFEDRPFEGTFTI 80
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
S + + R E AL G +
Sbjct: 81 NTEISSMASPMFENGKNSDEEVLISRLIEKAVRRSNALDLESLCVIAGEKVWH--IRADI 138
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGH-VAAISCGMLCGYPIVDLDY 179
I + + + LQH + Q + V + + + + Y
Sbjct: 139 NFLNYDGGLIDASCIGVMTALQHFKKPDVSIQGTDVTIYSFDERQPVPLSILHVPICVTY 198
Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERAT-------FSQDHFFAMLNLAKDRIADL 230
+ D + N + I + +++ + + ++ L+K+ +
Sbjct: 199 SFFNPGDKEENIKGALNQEIAIMDANSKEEAIRDGSLVITMNKNRELIQLSKNGGLPI 256
>gi|68076189|ref|XP_680014.1| exoribonuclease PH [Plasmodium berghei strain ANKA]
gi|56500878|emb|CAH99972.1| exoribonuclease PH, putative [Plasmodium berghei]
Length = 281
Score = 54.5 bits (129), Expect = 1e-05, Method: Composition-based stats.
Identities = 44/262 (16%), Positives = 82/262 (31%), Gaps = 29/262 (11%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+R+ GR R I + + + A+GS V + +++ L +P + G++
Sbjct: 15 IRVDGRTLLTYRTIEINKSILVSADGSSSVMNEENNVICGIKLSL-LPPEQHSIDEGFVN 73
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
+ NR+K+E + + + V S I I+ V+
Sbjct: 74 LQIDCPASVASNRIKKEHLQIMTSIIYDLCIKNNIDKKKLCVLPSK-FVWGIDINVMVLN 132
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKF----------------------QLSQVLK 158
GG +VAL+D + K +L +
Sbjct: 133 GGGGLLDIISIAIYVALNDMNIPVVKAPKKIDELNMFHNTKSKEYELEIVENEKLPFPCE 192
Query: 159 GHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDH--F 216
IS G + I D+ E+ ++ +T SG V + S +
Sbjct: 193 NIPICISIGEINNKYIYDMSKIEEELVENVFVVAVTSSGKCVAFH---KLYGISMEVSSI 249
Query: 217 FAMLNLAKDRIADLIKLQKDVI 238
M + +L K + I
Sbjct: 250 LNMSENSVKISQNLFKKINEAI 271
>gi|303313275|ref|XP_003066649.1| hypothetical protein CPC735_058740 [Coccidioides posadasii C735
delta SOWgp]
gi|240106311|gb|EER24504.1| hypothetical protein CPC735_058740 [Coccidioides posadasii C735
delta SOWgp]
Length = 790
Score = 54.5 bits (129), Expect = 1e-05, Method: Composition-based stats.
Identities = 32/260 (12%), Positives = 68/260 (26%), Gaps = 49/260 (18%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKF---------GDT--------HLLTTATL 43
+R R+ ++R+I L V A GS ++ T L+ T
Sbjct: 36 IRS--RKAAELRKIFLKSGVIPSASGSAYLELQPSNDPAYKSKTLIPPSSSLKLVCTVHG 93
Query: 44 EEKVPMWIRNTKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVD 103
+P + + ++ P + R +++ + AL ++
Sbjct: 94 PRPLPRSAPFSPNLILSTHVKFAPFAGRRRRGYIRDM-----YERDLAVHLETALGGMII 148
Query: 104 LSALGSRQIIIDCDVIQAD----------------------GGTRTAAITGAWVALHDCL 141
+ + ++++ + + IT A A+ D
Sbjct: 149 GDRWPKSGLDVTVNILEGEDDRWWGDSLSPGPLGGVDGWGLMNVLASCITVASAAIVDAR 208
Query: 142 QHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID---VDANFVMTDSGH 198
D + V + + + LD D + M
Sbjct: 209 IDCLDLLAGGVAAIVEEKDRMSQDTNSKEQGRSLVLDPDPSEHRDIASLCIVGYMPSRDE 268
Query: 199 IVEVQGSAERATFSQDHFFA 218
I EV + + D
Sbjct: 269 ITEVWLKGDVSGVGYDSLMD 288
>gi|299750699|ref|XP_001829767.2| exosome component Rrp46 [Coprinopsis cinerea okayama7#130]
gi|298409029|gb|EAU91989.2| exosome component Rrp46 [Coprinopsis cinerea okayama7#130]
Length = 238
Score = 54.5 bits (129), Expect = 1e-05, Method: Composition-based stats.
Identities = 35/237 (14%), Positives = 62/237 (26%), Gaps = 15/237 (6%)
Query: 6 RQENQ-MREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYG 64
R N+ R + + +GS FG++ L + + +V + +
Sbjct: 8 RSSNEQFRPLHIVYDGLNRVDGSARFGFGNSAALASVSGPIEVRLAAEQSSQATFEVHVR 67
Query: 65 MLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGG 124
K +A R I R L +V Q + G
Sbjct: 68 PFSNVPATDSKSQATVIRSALTPSLILTKNPRTLVQLV-------VQNLSSASTNTERDG 120
Query: 125 TRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDST 184
A I + +AL + V V S G P +
Sbjct: 121 LTAAMINASTLALLNAGSLPMRGV-------VCAVAVGRTSNGEFLVDPTAEEAKDITEG 173
Query: 185 IDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
F + + V + Q+H + +A+ + K K + E
Sbjct: 174 GCFSFMFAGSSASTCVWTNWRSTSGGVKQEHLESGKAMARTAAQRIYKAIKTSLGGE 230
>gi|213409001|ref|XP_002175271.1| exosome complex exonuclease RRP46 [Schizosaccharomyces japonicus
yFS275]
gi|212003318|gb|EEB08978.1| exosome complex exonuclease RRP46 [Schizosaccharomyces japonicus
yFS275]
Length = 214
Score = 54.5 bits (129), Expect = 1e-05, Method: Composition-based stats.
Identities = 29/223 (13%), Positives = 67/223 (30%), Gaps = 19/223 (8%)
Query: 17 TRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGNRVKR 76
+ ++GS K DT +L + +V + +G + +
Sbjct: 3 KIGILSQSDGSSDWKQRDTRVLCSVNGPIEVKPRSEIPNRATFELLVSPISGVSGTKERF 62
Query: 77 EAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ-ADGGTRTAAITGAWV 135
+ I L V + I ++ +++ + AAI +
Sbjct: 63 -------------LASRILSVLEDAVLSTNYPRTLIQVNVQIVEGDENDLLAAAINATVL 109
Query: 136 ALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTD 195
A D M+ +S K + + E V D
Sbjct: 110 AFLDAGIAMKYMPC--AISCAWKNPKETQANENAMVDYPAEKSTIEQPVHITMCYTVSAD 167
Query: 196 SGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
++ ++ S ++ F++L A+ R+ ++ + + V+
Sbjct: 168 PKSLLFLESSGM---IPEEDLFSVLASAESRVDEVAQKLRQVV 207
>gi|237837415|ref|XP_002368005.1| exosome complex exonuclease, putative [Toxoplasma gondii ME49]
gi|211965669|gb|EEB00865.1| exosome complex exonuclease, putative [Toxoplasma gondii ME49]
gi|221509233|gb|EEE34802.1| exosome complex exonuclease, putative [Toxoplasma gondii VEG]
Length = 352
Score = 54.5 bits (129), Expect = 1e-05, Method: Composition-based stats.
Identities = 42/318 (13%), Positives = 80/318 (25%), Gaps = 97/318 (30%)
Query: 1 MRLSGRQENQMREISLTR---------------------------------------RVS 21
+R GR+ +++RE+ + V
Sbjct: 21 LRADGRRPHELRELRFSTCVPSLLPSPSARPASASDPRKADSSVESEENNLAPFASGGVG 80
Query: 22 KYAEGSCLVKFGDTHLLTTATLEEKVP--------------------------------- 48
+A+G LV FG T + +P
Sbjct: 81 THADGRSLVSFGSTKVAAFVFGPRPLPAGAGNASRALVSASGGGWSERGVLEEGFDASGA 140
Query: 49 ----------MWIRNTKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRAL 98
+ + G+ P S R G E+ + + +
Sbjct: 141 DSVLGQGGAAGSGGAAERASLLCRVGIAPFSGDWRADVTRSGGAAEE--HEVALGVRKVV 198
Query: 99 RSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLK 158
SV+ I + V++ DGG A+I+ A +AL D +D
Sbjct: 199 ESVILADTCPRSLICLFVHVVENDGGILAASISAASLALVDAGIATKDFVAAM------- 251
Query: 159 GHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFA 218
+ + + + ++ SG + +Q + S D F
Sbjct: 252 ---SCVYMPRQLTPLLDPPRAELQTGAPSLTLAMLVSSGEVSLLQLDGQ---VSTDVFEQ 305
Query: 219 MLNLAKDRIADLIKLQKD 236
M ++ + K
Sbjct: 306 MYEACAAGCREVGEAMKA 323
>gi|194902325|ref|XP_001980673.1| GG17562 [Drosophila erecta]
gi|190652376|gb|EDV49631.1| GG17562 [Drosophila erecta]
Length = 226
Score = 54.5 bits (129), Expect = 1e-05, Method: Composition-based stats.
Identities = 24/232 (10%), Positives = 64/232 (27%), Gaps = 27/232 (11%)
Query: 9 NQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPR 68
+++R++ +GS + G T L+ +V + ++ Y
Sbjct: 6 DKLRQMHCEFNPLSRCDGSVMYSQGATGLIGAVLGPIEVKTQNLSIDGSYLECNYRPKAG 65
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
+ + + I L + A ++ + ++ G
Sbjct: 66 L-------------PQVKDRIREAAIRDVLELALLAEAHPRSKMSVQIQELEDRGSIDAC 112
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
A+ A +A+ M+ Y +
Sbjct: 113 ALNCACLAMLIGGLPMK-----------YSFAAVHCIINEQGEYVLDPDQSETLHQRASF 161
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
+ + G+++ VQ + F F + L + A++ + + ++
Sbjct: 162 TFVLDSVEGNLLLVQ---TKGAFKIAQFNDIECLCRAASAEIFQFYRSQVAK 210
>gi|315046942|ref|XP_003172846.1| 3' exoribonuclease [Arthroderma gypseum CBS 118893]
gi|311343232|gb|EFR02435.1| 3' exoribonuclease [Arthroderma gypseum CBS 118893]
Length = 369
Score = 54.5 bits (129), Expect = 1e-05, Method: Composition-based stats.
Identities = 33/274 (12%), Positives = 65/274 (23%), Gaps = 44/274 (16%)
Query: 6 RQENQMREISLTRRVSKYAEGSCLVKFG----DT-----------HLLTTATLEEKVPMW 50
R ++R+I L V A GS + +T L+ + + +
Sbjct: 74 RDAKELRKIYLKTGVIPSASGSAYFELHPSNSNTSGSLIPPSSSLKLICSVNGPKPLSRS 133
Query: 51 IRNTKHGWITAEY----------GMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRS 100
+ + ++A R R + G + L
Sbjct: 134 TPFSPNLLLSAHVKFAPFAARRRRAHVRDMNERDLGVHLENALRGAIIGDRWP-KSGLDI 192
Query: 101 VVDLSALGSRQIIIDCDVIQA--------DGGTRTAAITGAWVALHDCLQHMEDCSNKFQ 152
+ + + D + +T A A+ D D
Sbjct: 193 TIMILEGEDDRWWGDMSTAETLTGSDGWGMMNILAHCVTVASAAIADARIDCLDLVAGGV 252
Query: 153 LSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFS 212
+ V A + + + M I E+ + A S
Sbjct: 253 AAVVEPSSSAEGATTSTKMVVLDPDPSEHSNISSACVVGYMPSLDEITELWLKGDMAGAS 312
Query: 213 QD----------HFFAMLNLAKDRIADLIKLQKD 236
D + A+ + LI+ K+
Sbjct: 313 ADGTYASPNHDALMDGAIAAARASHSVLIEAVKE 346
>gi|169762716|ref|XP_001727258.1| 3' exoribonuclease family protein [Aspergillus oryzae RIB40]
gi|83770286|dbj|BAE60419.1| unnamed protein product [Aspergillus oryzae]
Length = 324
Score = 54.5 bits (129), Expect = 1e-05, Method: Composition-based stats.
Identities = 33/272 (12%), Positives = 70/272 (25%), Gaps = 42/272 (15%)
Query: 6 RQENQMREISLTRRVSKYAEGSCLVKFGD------------------THLL---TTATLE 44
RQ N++R+I L + A GS +++ + + L T
Sbjct: 38 RQPNELRKIFLKTGLIPSASGSAYLEY-EPSASLAAARSSPKSLIPPSSALKLACTVHGP 96
Query: 45 EKVPMWIRNTKHGWITAEYGMLPRSTGNRVKR-EAVSGRQGGRSQEIQ----RMIGR--- 96
+ +P + + +T P + R S R G E + R
Sbjct: 97 KPLPRSATFSPNLVLTTHIKYAPFAARKRKGHIRDASERDLGVHLETALRGVIVAERWPK 156
Query: 97 -ALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQ 155
L + + + D + G A +
Sbjct: 157 SGLDITITILEAEDDRWWGDAPDSHDAPWGMMNVLAGCITAASAAISDARIDCLDLIAGG 216
Query: 156 VLKGHVAAISCGMLCGYPIVDLDY-GEDSTIDVDANFVMTDSGHIVEVQGSA-------- 206
V G ++D D + + M I E+
Sbjct: 217 VAAIVADESEDGEAKPKLMLDTDPAEHKAILSACVVAYMPSRDEITEIWLKGDSSKALLG 276
Query: 207 --ERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
++ + + ++ A+ + L + ++
Sbjct: 277 PDDKRSGHEALLDGAVDAARGAHSVLAEAVRE 308
>gi|295664845|ref|XP_002792974.1| exosome complex exonuclease RRP45 [Paracoccidioides brasiliensis
Pb01]
gi|226278495|gb|EEH34061.1| exosome complex exonuclease RRP45 [Paracoccidioides brasiliensis
Pb01]
Length = 295
Score = 54.1 bits (128), Expect = 2e-05, Method: Composition-based stats.
Identities = 28/221 (12%), Positives = 68/221 (30%), Gaps = 16/221 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+RL GR +Q+R + ++ G ++ G T ++ + E P R G T
Sbjct: 23 IRLDGRALDQLRPLMVSFG---NECGHVKLQLGKTSVVVRISAEVTKPHPEREND-GIFT 78
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
+ ++ + ++ + R+I R+ + + + +
Sbjct: 79 VVVELNDMTSPAFKTGWQSEM-ETQLARILDRIIRRSNALDTESLCIAAGKNCWHIRADV 137
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
+ + +A+ L H + +V+
Sbjct: 138 HVIDSDGGLVDSCCLAIMTALLHFRLSEAIVREGRVIVFSPEER-----------VPSPL 186
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLN 221
+ + + F + D G I+ + ++ S + LN
Sbjct: 187 NLTKLPLSTTFNIYDEGRIIVLDAVSKEEAVSDGNLIIALN 227
>gi|21706518|gb|AAH34358.1| Exosome component 5 [Mus musculus]
Length = 235
Score = 54.1 bits (128), Expect = 2e-05, Method: Composition-based stats.
Identities = 21/145 (14%), Positives = 39/145 (26%), Gaps = 13/145 (8%)
Query: 11 MREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRST 70
+R + + + +GS GDT +L +V +
Sbjct: 28 LRHFACEQNLLSRPDGSASFLQGDTSVLAGVYGPAEV---------KVSKEIFNKATLEV 78
Query: 71 GNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAI 130
R K + R + + +VV + I + V+ G +
Sbjct: 79 ILRPKIGLPGVAEKSRERL----VRNTCEAVVLGALHPRTSITVVLQVVSDAGSLLACCL 134
Query: 131 TGAWVALHDCLQHMEDCSNKFQLSQ 155
A +AL D M +
Sbjct: 135 NAACMALVDAGVPMRALFCGVTCAL 159
>gi|74199186|dbj|BAE33136.1| unnamed protein product [Mus musculus]
Length = 235
Score = 54.1 bits (128), Expect = 2e-05, Method: Composition-based stats.
Identities = 21/145 (14%), Positives = 39/145 (26%), Gaps = 13/145 (8%)
Query: 11 MREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRST 70
+R + + + +GS GDT +L +V +
Sbjct: 28 LRHFACEQNLLSRPDGSASFLQGDTSVLAGVYGPAEV---------KVSKEIFNKATLEV 78
Query: 71 GNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAI 130
R K + R + + +VV + I + V+ G +
Sbjct: 79 ILRPKIGLPGVAEKSRERL----VRNTCEAVVLGALHPRTSITVVLQVVSDAGSLLACCL 134
Query: 131 TGAWVALHDCLQHMEDCSNKFQLSQ 155
A +AL D M +
Sbjct: 135 NAACMALVDAGVPMRALFCGVTCAL 159
>gi|20070392|ref|NP_613052.1| exosome complex component RRP46 [Mus musculus]
gi|21759413|sp|Q9CRA8|EXOS5_MOUSE RecName: Full=Exosome complex component RRP46; AltName:
Full=Exosome component 5; AltName: Full=Ribosomal
RNA-processing protein 46
gi|12839596|dbj|BAB24607.1| unnamed protein product [Mus musculus]
gi|12840879|dbj|BAB24993.1| unnamed protein product [Mus musculus]
gi|148692300|gb|EDL24247.1| exosome component 5, isoform CRA_b [Mus musculus]
Length = 235
Score = 54.1 bits (128), Expect = 2e-05, Method: Composition-based stats.
Identities = 21/145 (14%), Positives = 39/145 (26%), Gaps = 13/145 (8%)
Query: 11 MREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRST 70
+R + + + +GS GDT +L +V +
Sbjct: 28 LRHFACEQNLLSRPDGSASFLQGDTSVLAGVYGPAEV---------KVSKEIFNKATLEV 78
Query: 71 GNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAI 130
R K + R + + +VV + I + V+ G +
Sbjct: 79 ILRPKIGLPGVAEKSRERL----VRNTCEAVVLGALHPRTSITVVLQVVSDAGSLLACCL 134
Query: 131 TGAWVALHDCLQHMEDCSNKFQLSQ 155
A +AL D M +
Sbjct: 135 NAACMALVDAGVPMRALFCGVTCAL 159
>gi|71651570|ref|XP_814460.1| ribosomal RNA processing protein 41B [Trypanosoma cruzi strain CL
Brener]
gi|70879434|gb|EAN92609.1| ribosomal RNA processing protein 41B, putative [Trypanosoma cruzi]
Length = 285
Score = 54.1 bits (128), Expect = 2e-05, Method: Composition-based stats.
Identities = 25/148 (16%), Positives = 47/148 (31%), Gaps = 4/148 (2%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHG--- 57
+R GR +MR L +GS G T ++ K G
Sbjct: 6 LRRDGRGHREMRGKELRTSELTQFDGSAWYSQGLTTVVAAVNGPVAA-RQEDYRKCGVQV 64
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
++ + +R+ E Q E++ + ++++VV L + +
Sbjct: 65 YVNRAVRIPRAGGTDRLCVEEQRVEQRRMDAEVEMFLTASIQAVVRLDQFPRCVLEVHVT 124
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHME 145
++ DG + A AL D
Sbjct: 125 ILADDGALLSVATNALMCALLDAGVPCR 152
>gi|195107981|ref|XP_001998571.1| GI24046 [Drosophila mojavensis]
gi|193915165|gb|EDW14032.1| GI24046 [Drosophila mojavensis]
Length = 239
Score = 54.1 bits (128), Expect = 2e-05, Method: Composition-based stats.
Identities = 36/232 (15%), Positives = 74/232 (31%), Gaps = 31/232 (13%)
Query: 11 MREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRST 70
+RE+ +GS + G T ++ +V + + ++ Y
Sbjct: 14 LREMHCKFNPLSRCDGSVMYSQGATVVIAAVLGPIEVKTQNLSIEGSYLECNY------- 66
Query: 71 GNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAI 130
R K ++ R I+ ++ AL S A ++ + ++ G A+
Sbjct: 67 --RPKAGLPQVKERIREAAIRDVLELALLS----EAYPRAKMSLQVQELEDRGSIDACAL 120
Query: 131 TGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG-YPIVDLDYGEDSTIDVDA 189
A +A+ LK AA+ C + I+D + E
Sbjct: 121 NAACLAM-------------LIGGLPLKYSFAAVHCIINEKGDFILDPEESETQHQKASF 167
Query: 190 NFVMTD-SGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
F G ++ VQ + F F + + + A++ + I+
Sbjct: 168 TFAFDSVDGDLLLVQ---TKGAFKIAQFNDIECICRQASAEIFDFYRSNIAK 216
>gi|325088410|gb|EGC41720.1| 3' exoribonuclease [Ajellomyces capsulatus H88]
Length = 350
Score = 54.1 bits (128), Expect = 2e-05, Method: Composition-based stats.
Identities = 35/288 (12%), Positives = 73/288 (25%), Gaps = 62/288 (21%)
Query: 6 RQENQMREISLTRRVSKYAEGSCLVKFG----------DT--------HLLTTATLEEKV 47
R+++++R I L + A GS ++F T L+ + + +
Sbjct: 41 RKQHELRRIFLKTGLIPSASGSAYLEFQPSSFIARSKLKTLIPPSSSLKLICSIHGPKPL 100
Query: 48 PMWIRNTKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSAL 107
P + + ++ P ++ R +++ + ALR +
Sbjct: 101 PRSAPFSPNLLLSTHVKFAPFASRRRRGNIR-----DVNERDLGVHLETALRGAIIAERW 155
Query: 108 GSR--------------QIIIDCDVIQADGGTRTA--------AITGAWVALHDCLQHME 145
D G IT A A+ D
Sbjct: 156 PKSGLDITVTVLEGEDDCWWGDVLSPGPLGSVDGWGLMNVLAGCITVASAAIADARIDCM 215
Query: 146 DCSNKFQLSQVLKGHVAA-------ISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGH 198
D + V +V A G + + M
Sbjct: 216 DLITGGVAAFVESPNVEASGRTKDSSQRGHGYSLVLDPDPSEHLGIVSACVVGYMPSRDE 275
Query: 199 IVEVQGSAERATFS----------QDHFFAMLNLAKDRIADLIKLQKD 236
I E+ + + S + ++ A+ A L + ++
Sbjct: 276 ITELWLKGDTSNISAGSQNAAARHEALIDGAVDAARGAQAVLAEAVRE 323
>gi|240282271|gb|EER45774.1| 3' exoribonuclease [Ajellomyces capsulatus H143]
Length = 350
Score = 54.1 bits (128), Expect = 2e-05, Method: Composition-based stats.
Identities = 35/288 (12%), Positives = 73/288 (25%), Gaps = 62/288 (21%)
Query: 6 RQENQMREISLTRRVSKYAEGSCLVKFG----------DT--------HLLTTATLEEKV 47
R+++++R I L + A GS ++F T L+ + + +
Sbjct: 41 RKQHELRRIFLKTGLIPSASGSAYLEFQPSSFIARSKLKTLIPPSSSLKLICSIHGPKPL 100
Query: 48 PMWIRNTKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSAL 107
P + + ++ P ++ R +++ + ALR +
Sbjct: 101 PRSAPFSPNLLLSTHVKFAPFASRRRRGNIR-----DVNERDLGVHLETALRGAIIAERW 155
Query: 108 GSR--------------QIIIDCDVIQADGGTRTA--------AITGAWVALHDCLQHME 145
D G IT A A+ D
Sbjct: 156 PKSGLDITVTVLEGEDDCWWGDVLSPGPLGSVDGWGLMNVLAGCITVASAAIADARIDCM 215
Query: 146 DCSNKFQLSQVLKGHVAA-------ISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGH 198
D + V +V A G + + M
Sbjct: 216 DLITGGVAAFVESPNVEASGRTKDSSQRGHGYSLVLDPDPSEHLGIVSACVVGYMPSRDE 275
Query: 199 IVEVQGSAERATFS----------QDHFFAMLNLAKDRIADLIKLQKD 236
I E+ + + S + ++ A+ A L + ++
Sbjct: 276 ITELWLKGDTSNISAGSQNAAARHEALIDGAVDAARGAQAVLAEAVRE 323
>gi|312213335|emb|CBX93417.1| similar to 3' exoribonuclease family protein [Leptosphaeria
maculans]
Length = 371
Score = 54.1 bits (128), Expect = 2e-05, Method: Composition-based stats.
Identities = 11/44 (25%), Positives = 21/44 (47%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE 44
+R +GR ++ R L + GS +V+ G+T ++ E
Sbjct: 45 LRANGRTAHEFRTPGLHTGSLTHCNGSAVVRLGNTSVVCGVRGE 88
>gi|123508639|ref|XP_001329682.1| nucleolar autoantigen-like protein [Trichomonas vaginalis G3]
gi|121912729|gb|EAY17547.1| nucleolar autoantigen-like protein, putative [Trichomonas vaginalis
G3]
Length = 315
Score = 54.1 bits (128), Expect = 2e-05, Method: Composition-based stats.
Identities = 25/225 (11%), Positives = 60/225 (26%), Gaps = 15/225 (6%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+R GR N+ R +++ +G+ +VK G T + ++ +V + G+ +
Sbjct: 25 LRPDGRDPNEPRRLTVDFS-----DGAAIVKLGSTIVSCRV-IKNQVLADENHPNQGFFS 78
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
+ + R ++ + + + + I
Sbjct: 79 IGLSSTHKIDSYFRAETLNAVR---DMFKMNNALDLESLVIQIGKLVWELKCEIVILEND 135
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
G + L + + + + + VD
Sbjct: 136 GGLFEAMTLAVGCGL-----LATKLPSTRGDRSLTLHHLPIPITFALIDQRTRFVDPTVL 190
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKD 225
E D G I ++ + T +++A D
Sbjct: 191 EALACDGFLTICANAQGEICSIRKNG-GVTLPSTVMDNCIDIAVD 234
>gi|71022771|ref|XP_761615.1| hypothetical protein UM05468.1 [Ustilago maydis 521]
gi|46101168|gb|EAK86401.1| hypothetical protein UM05468.1 [Ustilago maydis 521]
Length = 332
Score = 54.1 bits (128), Expect = 2e-05, Method: Composition-based stats.
Identities = 14/75 (18%), Positives = 28/75 (37%), Gaps = 1/75 (1%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+R GR R+ ++T A+GS V+ G+T + E P + + G++
Sbjct: 30 IREDGRPLAAFRDATITLGSISTADGSSFVRIGNTSCIAAIKAEVATP-QLSRPREGYLI 88
Query: 61 AEYGMLPRSTGNRVK 75
+ +
Sbjct: 89 PNVELPAVCSSKFKP 103
>gi|71410195|ref|XP_807405.1| ribosomal RNA processing protein 41B [Trypanosoma cruzi strain CL
Brener]
gi|70871397|gb|EAN85554.1| ribosomal RNA processing protein 41B, putative [Trypanosoma cruzi]
Length = 284
Score = 53.7 bits (127), Expect = 2e-05, Method: Composition-based stats.
Identities = 25/149 (16%), Positives = 47/149 (31%), Gaps = 6/149 (4%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+R GR +MR L +GS G T ++ V + + +
Sbjct: 6 LRRDGRGHREMRGKELRTSELTQFDGSAWYSQGLTTVVAAVNGP--VAARQEDYRKCNVQ 63
Query: 61 AEYGMLPRSTG----NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
R +R+ E Q E++ + ++++VV L + +
Sbjct: 64 VYVNRAVRIPRAGGTDRLCVEEQRLEQQRMDAEVEMFLTASIQAVVRLDQFPRCVLEVHV 123
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHME 145
++ DG + A AL D
Sbjct: 124 TILADDGALLSVATNALMCALLDAGVPCR 152
>gi|307200434|gb|EFN80643.1| Exosome complex exonuclease MTR3 [Harpegnathos saltator]
Length = 215
Score = 53.7 bits (127), Expect = 2e-05, Method: Composition-based stats.
Identities = 36/207 (17%), Positives = 69/207 (33%), Gaps = 9/207 (4%)
Query: 32 FGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQ 91
G+T ++ + +VP G + E+ P S R + Q +E
Sbjct: 1 MGNTKVICSVFDPREVPNKTGYCVQGELYCEFKFAPFSYRKRKMHQ-----QDAEEKEYS 55
Query: 92 RMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKF 151
++ RAL V LS + Q+ I V+ G AAI A +AL D M
Sbjct: 56 LVLQRALEPAVCLSEFPNFQVDIYATVLDNGGSALAAAIMAASLALADAGVPMYSLVTAS 115
Query: 152 QLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATF 211
+ ++ + + + + +++ I E+ +F
Sbjct: 116 TIGVYDNTYLVDPTDEEESFCCSKTVL-DANPDHGIIVQAILSQHNQISEMFV---VGSF 171
Query: 212 SQDHFFAMLNLAKDRIADLIKLQKDVI 238
+ D ++L D+ L + +
Sbjct: 172 NTDTIIHSMDLLSTAHKDICPLLEKCL 198
>gi|297277133|ref|XP_001102687.2| PREDICTED: exosome complex exonuclease RRP46 [Macaca mulatta]
Length = 277
Score = 53.7 bits (127), Expect = 2e-05, Method: Composition-based stats.
Identities = 22/145 (15%), Positives = 39/145 (26%), Gaps = 13/145 (8%)
Query: 11 MREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRST 70
+R + + + +GS GDT +L +V +
Sbjct: 70 LRHFACEQNLLSRPDGSASFLQGDTSVLAGVYGPAEV---------KVSKEIFNKATLEV 120
Query: 71 GNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAI 130
R K + R + I +VV + I + V+ G +
Sbjct: 121 ILRPKIGLPGVAEKSRERL----IRNTCEAVVLGTLHPRTSITVVLQVVSDAGSLLACCL 176
Query: 131 TGAWVALHDCLQHMEDCSNKFQLSQ 155
A +AL D M +
Sbjct: 177 NAACMALVDAGVPMRALFCGVTCAL 201
>gi|195496098|ref|XP_002095549.1| GE22455 [Drosophila yakuba]
gi|194181650|gb|EDW95261.1| GE22455 [Drosophila yakuba]
Length = 328
Score = 53.7 bits (127), Expect = 2e-05, Method: Composition-based stats.
Identities = 36/241 (14%), Positives = 69/241 (28%), Gaps = 20/241 (8%)
Query: 12 REISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPM-WIRNTKHGWITAEYGMLPRST 70
R + V GS +++G+T +L +++ R G + +T
Sbjct: 48 RNTFIRAGVLTTVRGSAYMEYGNTKVLAIVAPPKELIRASARRMNMGVLNCYVNFAAFAT 107
Query: 71 GNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAI 130
G+ R + + M+ +A+ VV + + Q+ I ++ DG + AI
Sbjct: 108 GDLDSVP-------ERERHLGSMLTKAMEPVVCRTEFLNFQLDIRVLILDDDGCLLSTAI 160
Query: 131 TGAWVALHDCLQHMEDCSNKFQLSQVLKG---------HVAAISCGMLCGYPIVDLDYGE 181
VAL +C D
Sbjct: 161 NCCGVALVECGISTYDLITASTACIYRDHVFINPSAKVEELLWKHRGNSNTDSTTTSPSS 220
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
+ M I + Q S + +L+ L +L + V++
Sbjct: 221 VQEHGLIITASMDTFEQIAQCQQCGY---LSPATYMKLLDYTVAVNKSLRQLIRGVLTKR 277
Query: 242 V 242
V
Sbjct: 278 V 278
>gi|195476691|ref|XP_002086206.1| GE23007 [Drosophila yakuba]
gi|194185996|gb|EDW99607.1| GE23007 [Drosophila yakuba]
Length = 328
Score = 53.7 bits (127), Expect = 2e-05, Method: Composition-based stats.
Identities = 36/241 (14%), Positives = 69/241 (28%), Gaps = 20/241 (8%)
Query: 12 REISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPM-WIRNTKHGWITAEYGMLPRST 70
R + V GS +++G+T +L +++ R G + +T
Sbjct: 48 RNTFIRAGVLTTVRGSAYMEYGNTKVLAIVAPPKELIRASARRMNMGVLNCYVNFAAFAT 107
Query: 71 GNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAI 130
G+ R + + M+ +A+ VV + + Q+ I ++ DG + AI
Sbjct: 108 GDLDSVP-------ERERHLGSMLTKAMEPVVCRTEFLNFQLDIRVLILDDDGCLLSTAI 160
Query: 131 TGAWVALHDCLQHMEDCSNKFQLSQVLKG---------HVAAISCGMLCGYPIVDLDYGE 181
VAL +C D
Sbjct: 161 NCCGVALVECGISTYDLITASTACIYRDHVFINPSAKVEELLWKHRGNSNTDSTTTSPSS 220
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
+ M I + Q S + +L+ L +L + V++
Sbjct: 221 VQEHGLIITASMDTFEQIAQCQQCGY---LSPATYMKLLDYTLAVNKSLRQLIRGVLTKR 277
Query: 242 V 242
V
Sbjct: 278 V 278
>gi|310797863|gb|EFQ32756.1| exosome complex exonuclease RRP43 [Glomerella graminicola M1.001]
Length = 339
Score = 53.7 bits (127), Expect = 2e-05, Method: Composition-based stats.
Identities = 13/43 (30%), Positives = 22/43 (51%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE 44
R +GR N+ R ++ +A GS +V+ GDT ++ E
Sbjct: 35 RSNGRAPNEARIPNINTSSLTHANGSAVVRTGDTTVICGVRAE 77
>gi|254490936|ref|ZP_05104118.1| S1 RNA binding domain protein [Methylophaga thiooxidans DMS010]
gi|224463845|gb|EEF80112.1| S1 RNA binding domain protein [Methylophaga thiooxydans DMS010]
Length = 208
Score = 53.7 bits (127), Expect = 2e-05, Method: Composition-based stats.
Identities = 10/54 (18%), Positives = 20/54 (37%), Gaps = 1/54 (1%)
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
D T+ G + +Q + +++ L A+D ++ VIS
Sbjct: 1 DFKVAGTEKG-VTALQMDIKIEGINEEIMRTALAQARDGRIHILDKMNAVISTH 53
>gi|306836335|ref|ZP_07469315.1| polyribonucleotide nucleotidyltransferase [Corynebacterium accolens
ATCC 49726]
gi|304567806|gb|EFM43391.1| polyribonucleotide nucleotidyltransferase [Corynebacterium accolens
ATCC 49726]
Length = 255
Score = 53.3 bits (126), Expect = 2e-05, Method: Composition-based stats.
Identities = 17/108 (15%), Positives = 37/108 (34%), Gaps = 6/108 (5%)
Query: 131 TGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDAN 190
+ ++L++ ++ + V + G + D+ ED+ D+D
Sbjct: 1 CASTLSLYNAGVPLKAPVAGIAMGLV-----SGEVKGKEKFVALTDILGAEDAFGDMDFK 55
Query: 191 FVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
T I +Q + L A+D A +++ +VI
Sbjct: 56 VAGTSEF-ITALQLDTKLDGIPSKVLAQALEQARDARATILETMAEVI 102
>gi|16183595|gb|AAL13710.1| GM01970p [Drosophila melanogaster]
Length = 233
Score = 53.3 bits (126), Expect = 2e-05, Method: Composition-based stats.
Identities = 29/234 (12%), Positives = 71/234 (30%), Gaps = 31/234 (13%)
Query: 9 NQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPR 68
+++R++ +GS + G T L+ +V + ++ Y
Sbjct: 12 DKLRQMHCEFNPLSRCDGSVMYSQGATGLIGAVLGPIEVKTQNLSIDGSYLECNYRPKAG 71
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
+ + I L + A ++ + ++ G
Sbjct: 72 L-------------PQVTDRIREAAIRDVLELALLSEAHPRSKMSVQIQELEDRGSIDAC 118
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG-YPIVDLDYGEDSTIDV 187
A+ A +A+ LK AA+ + ++D D E
Sbjct: 119 AVNCACLAM-------------LIGGLPLKYSFAAVHAIINEQGEYVLDPDQSETLHQRA 165
Query: 188 DANFVMTD-SGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
F G+++ +Q + +F F + L + A++ + ++ ++
Sbjct: 166 SFTFAFDSVEGNLLLIQ---TKGSFKIAQFNDIECLCRAASAEIFQFYRNQVAK 216
>gi|331221670|ref|XP_003323509.1| hypothetical protein PGTG_05411 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|309302499|gb|EFP79090.1| hypothetical protein PGTG_05411 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 298
Score = 53.3 bits (126), Expect = 3e-05, Method: Composition-based stats.
Identities = 13/47 (27%), Positives = 21/47 (44%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKV 47
MR R E +R +++ + ++GS FGD L T +V
Sbjct: 4 MRSDSRTEADIRSLTMRMSILSRSDGSAQFSFGDLKALGAVTGPAEV 50
>gi|225559371|gb|EEH07654.1| exosome complex exonuclease RRP45 [Ajellomyces capsulatus G186AR]
Length = 293
Score = 53.3 bits (126), Expect = 3e-05, Method: Composition-based stats.
Identities = 31/223 (13%), Positives = 68/223 (30%), Gaps = 20/223 (8%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+RL R +Q+R ++++ G ++ G T ++ + E P R +
Sbjct: 23 VRLDSRALDQLRPLTVSFG---DEYGHVKLQLGKTSVVVRISAEVTKPRSERENDGIFTV 79
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
+ S R++ Q R+ + AL + A G
Sbjct: 80 SVELNDMASPAYETGRQSELESQLVRTLDRIIRRSNALDTESLCIAAGK--NCWHVRADV 137
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD--LD 178
+ + +A+ L + A + G + Y +
Sbjct: 138 HIVDSDGGLVDSCCLAIMTGL-------------LHFRLPEAVVREGRVTVYRPEERVPS 184
Query: 179 YGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLN 221
+ + + F M D G I+ + +++ S+ L+
Sbjct: 185 PLNLTKLPLSTTFNMYDEGRIIVLDATSKEEAVSEGSLIIALD 227
>gi|307111676|gb|EFN59910.1| hypothetical protein CHLNCDRAFT_132943 [Chlorella variabilis]
Length = 301
Score = 53.3 bits (126), Expect = 3e-05, Method: Composition-based stats.
Identities = 39/261 (14%), Positives = 75/261 (28%), Gaps = 43/261 (16%)
Query: 13 EISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGN 72
S+ V A+ S LVK G T L E +P + G + + + P + +
Sbjct: 27 PTSIGLGVVSTADASALVKVGSTAALAGIKCEV-MPASADTPEEGRLALQVELAPLCSAD 85
Query: 73 RVKREAVSGRQGGRSQEIQRMI------GRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
Q + R L +A + D +
Sbjct: 86 TRPGRPSEAAAVLTEQLSSLLEGAGVVDRRQLCIDPGKAAWAVYVDVYVLDADGSLHDAC 145
Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQL--------------------------------- 153
A+ A +L ++D +
Sbjct: 146 LLAVLAALSSLRLHAVAVDDTGRIQKAPADAAAAGAAGAQRQQGAADGAATALQQQPQGH 205
Query: 154 ---SQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERAT 210
+L H +++CG+ +VD E+ ++ + +SG I+ + AT
Sbjct: 206 QRRPLLLACHPVSLTCGLYRDRLLVDPTAEEEPLLEAAMTTTVDESGDILGFYKAGGSAT 265
Query: 211 FSQDHFFAMLNLAKDRIADLI 231
S++ + AK R ++
Sbjct: 266 LSRERMLECIEAAKQRSREVR 286
>gi|81428020|ref|YP_395019.1| nucleoside triphosphatase [Lactobacillus sakei subsp. sakei 23K]
gi|78609661|emb|CAI54707.1| Putative nucleoside triphosphatase, Ham1 family [Lactobacillus
sakei subsp. sakei 23K]
Length = 410
Score = 53.3 bits (126), Expect = 3e-05, Method: Composition-based stats.
Identities = 10/42 (23%), Positives = 16/42 (38%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT 42
+R R N +R + + S L + G T +L T
Sbjct: 3 VRTDNRAANDVRPVKVQWHYLTKQPASVLWQRGTTKVLAAVT 44
>gi|50556492|ref|XP_505654.1| YALI0F20240p [Yarrowia lipolytica]
gi|49651524|emb|CAG78463.1| YALI0F20240p [Yarrowia lipolytica]
Length = 216
Score = 53.3 bits (126), Expect = 3e-05, Method: Composition-based stats.
Identities = 28/228 (12%), Positives = 62/228 (27%), Gaps = 28/228 (12%)
Query: 19 RVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGNRVKREA 78
+ +GS + G T ++ + T + + R
Sbjct: 2 NILNNVDGSAKWEQG-TSVICSVTGPIETRRRTDEPTLAQVELVIRPAIGQATTRE---- 56
Query: 79 VSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVALH 138
I+ I L + V + + I +++ GT + L
Sbjct: 57 ---------TLIKDRIYSVLAATVVRNLYPRMLLQIVIQILEQGEGT-------GYNVLK 100
Query: 139 DCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDST----IDVDANFVMT 194
C + G A++ ++ I+ + S V
Sbjct: 101 LAACLNAVCLALIDSRTPMTGLFTAVAIAIVDDKLILHPTRKQVSQSTSTHAVSYFVENN 160
Query: 195 DSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNEV 242
+ ++ + E F+++ F +L A D+ ++ I V
Sbjct: 161 KATGLLMCESEGE---FTENQLFEVLEQAARACEDVALDMRERIEKGV 205
>gi|212533875|ref|XP_002147094.1| 3' exoribonuclease family protein (Rrp42), putative [Penicillium
marneffei ATCC 18224]
gi|210072458|gb|EEA26547.1| 3' exoribonuclease family protein (Rrp42), putative [Penicillium
marneffei ATCC 18224]
Length = 401
Score = 53.3 bits (126), Expect = 3e-05, Method: Composition-based stats.
Identities = 11/48 (22%), Positives = 18/48 (37%), Gaps = 1/48 (2%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGD-THLLTTATLEEKV 47
+R GR Q R ++ + GS + F D T + E +
Sbjct: 34 IRPDGRSPTQFRFLTAETGILPGTNGSARIGFADGTEAIVGVKAELER 81
>gi|327291858|ref|XP_003230637.1| PREDICTED: exosome complex exonuclease RRP41-like, partial [Anolis
carolinensis]
Length = 188
Score = 53.3 bits (126), Expect = 3e-05, Method: Composition-based stats.
Identities = 35/190 (18%), Positives = 70/190 (36%), Gaps = 21/190 (11%)
Query: 54 TKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQII 113
+ ++ + STG R +R + + + + + + QI
Sbjct: 10 HDQAVVNCQFSLATFSTGERKRRPHGDRQTSE----MSLHLKQTFEAAILTQLYPRSQID 65
Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP 173
I ++QADGG A++ A +A+ D + D V A S G + P
Sbjct: 66 IYVQILQADGGNYCASVNAATLAVIDAGIPLRDY-------------VCASSAGFIEDTP 112
Query: 174 IVDLDYGEDSTIDVDANFVM-TDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
+ DL+Y E+++ + S I ++ +A +DH ++ A D+
Sbjct: 113 LADLNYVEEASGGPQLALALLPKSEQIALLEMNAR---LHEDHLERIMEAASKACKDVYL 169
Query: 233 LQKDVISNEV 242
+ V+ +
Sbjct: 170 VLDQVVREHL 179
>gi|123427505|ref|XP_001307267.1| 3' exoribonuclease family, domain 1 containing protein [Trichomonas
vaginalis G3]
gi|121888886|gb|EAX94337.1| 3' exoribonuclease family, domain 1 containing protein [Trichomonas
vaginalis G3]
Length = 203
Score = 53.3 bits (126), Expect = 3e-05, Method: Composition-based stats.
Identities = 33/223 (14%), Positives = 66/223 (29%), Gaps = 34/223 (15%)
Query: 13 EISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGN 72
+I + K A GS V+ DT + + ++ TG
Sbjct: 4 KIGVRLGDIKGAAGSAYVELNDTKVFAAVYGPMEPENQQQD-------------SALTGI 50
Query: 73 RVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITG 132
+ + + + S + I I +++ + A
Sbjct: 51 VDCIIEDAWQNTKEYDALCHKLLHTFSSTIFHKKYFKTLIRISITILEKGELVQDATTLA 110
Query: 133 AWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFV 192
+AL D M+D V + +CG++ G + S+ +
Sbjct: 111 GSLALIDAGIEMKDF-------------VVSCNCGLVDGKFLPFT-----SSPRSVRVAI 152
Query: 193 MTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
+ + IVE + S D ++ A D +LI+ +
Sbjct: 153 LPSTNEIVETEV---IGRISPDEMKEAVHTATDGCLNLIESIR 192
>gi|118371223|ref|XP_001018811.1| 3' exoribonuclease family, domain 1 containing protein [Tetrahymena
thermophila]
gi|89300578|gb|EAR98566.1| 3' exoribonuclease family, domain 1 containing protein [Tetrahymena
thermophila SB210]
Length = 776
Score = 53.3 bits (126), Expect = 3e-05, Method: Composition-based stats.
Identities = 30/257 (11%), Positives = 74/257 (28%), Gaps = 22/257 (8%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+RL GR+ R I + G V GDTH++T T E P + G +
Sbjct: 465 IRLDGRKLMDSRNIKVIFG---NNVGEIEVLIGDTHIITKTTAEIIQPKQEKP-NEGSLK 520
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIG--RALRSVVDLSALGS--RQIIIDC 116
+ + + + ++++I +A+ I +D
Sbjct: 521 FNVDLSSMQDEQQPNNVNIKKYSNEIQKLLEKIIKGSKAIDMESLCIVTNKRVWSINVDS 580
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIV- 175
V+ G A ++L + + + + + +S +
Sbjct: 581 SVVSNGGNLIDAIYLSVIISLLHFRKPYVSVEQQSNIKIHTEKNPQPLSIHHIPIPFTFA 640
Query: 176 ----------DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFA--MLNLA 223
D E+ ++ + + + A + ++ +
Sbjct: 641 FFKKSTLLVSDPLVLEEQIMEGRLTISVNIYNDVCNIHKPG-GAPIKLELINKQMLVEVC 699
Query: 224 KDRIADLIKLQKDVISN 240
++I + + ++
Sbjct: 700 LNKIKQMTDFVRQILKE 716
>gi|225559339|gb|EEH07622.1| 3' exoribonuclease [Ajellomyces capsulatus G186AR]
Length = 350
Score = 53.3 bits (126), Expect = 3e-05, Method: Composition-based stats.
Identities = 35/288 (12%), Positives = 74/288 (25%), Gaps = 62/288 (21%)
Query: 6 RQENQMREISLTRRVSKYAEGSCLVKFG----------DT--------HLLTTATLEEKV 47
R+++++R I L + A GS ++F T L+ + + +
Sbjct: 41 RKQHELRRIFLKTGLIPSASGSAYLEFQPSSFIPRSKLKTLIPPSSSLKLICSIHGPKPL 100
Query: 48 PMWIRNTKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSAL 107
P + + ++ P ++ R +++ + ALR +
Sbjct: 101 PRSAPFSPNLLLSTHVKFAPFASRRRRGHIR-----DVNERDLGVHLETALRGAIIAERW 155
Query: 108 GSR--------------QIIIDCDVIQADGGTRTA--------AITGAWVALHDCLQHME 145
D GG IT A A+ D
Sbjct: 156 PKSGLDITVTVLEGEDDCWWGDVLSAGPLGGVDGWGLMNVLAGCITVASAAIADARIDCM 215
Query: 146 DCSNKFQLSQVLKGHV-------AAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGH 198
D + V +V + G + + M
Sbjct: 216 DLITGGVAAFVESPNVETSGRTKDSSQRGHGYSLVLDPDPSEHLGIVSACVVGYMPSRDE 275
Query: 199 IVEVQGSAERATFS----------QDHFFAMLNLAKDRIADLIKLQKD 236
I E+ + + S + ++ A+ A L + ++
Sbjct: 276 ITELWLKGDTSNISAGSQNAAARHEALIDGAVDAARGAQAVLAEAVRE 323
>gi|212526640|ref|XP_002143477.1| 3' exoribonuclease family protein [Penicillium marneffei ATCC
18224]
gi|210072875|gb|EEA26962.1| 3' exoribonuclease family protein [Penicillium marneffei ATCC
18224]
Length = 408
Score = 53.3 bits (126), Expect = 3e-05, Method: Composition-based stats.
Identities = 12/44 (27%), Positives = 19/44 (43%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE 44
+R +GR + R S + GS +V+ GDT + E
Sbjct: 52 LRANGRAPLEFRTTSANLGSLSHTNGSAVVRIGDTAAVCGVRAE 95
>gi|221488740|gb|EEE26954.1| exosome complex exonuclease, putative [Toxoplasma gondii GT1]
Length = 352
Score = 53.3 bits (126), Expect = 3e-05, Method: Composition-based stats.
Identities = 41/318 (12%), Positives = 79/318 (24%), Gaps = 97/318 (30%)
Query: 1 MRLSGRQENQMREISLTR---------------------------------------RVS 21
+R GR+ +++RE+ + V
Sbjct: 21 LRADGRRPHELRELRFSTCVPSLLPSPSARPASASDPRKADSSVESEENNLAPFASGGVG 80
Query: 22 KYAEGSCLVKFGDTHLLTTATLEEKVP--------------------------------- 48
+A+G LV FG T + +P
Sbjct: 81 THADGRSLVSFGSTKVAAFVFGPRPLPAGAGNASRALVSASGGGWSERGVLEEGFDASGA 140
Query: 49 ----------MWIRNTKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRAL 98
+ + G+ P S R G E+ + + +
Sbjct: 141 DSVLGQGGAAGSGGAAERASLLCRVGIAPFSGDWRADVTRSGGAAEE--HEVALGVRKVV 198
Query: 99 RSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLK 158
SV+ I + V++ DGG A+I+ A +AL D +D
Sbjct: 199 ESVILADTCPRSLICLFVHVVENDGGILAASISAASLALVDAGIATKDFVAAM------- 251
Query: 159 GHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFA 218
+ + + + ++ S + +Q + S D F
Sbjct: 252 ---SCVYMPRQLTPLLDPPRAELQTGAPSLTLAMLVSSDEVSLLQLDGQ---VSTDVFEQ 305
Query: 219 MLNLAKDRIADLIKLQKD 236
M ++ + K
Sbjct: 306 MYEACAAGCREVGEAMKA 323
>gi|170067614|ref|XP_001868552.1| exosome component 6 [Culex quinquefasciatus]
gi|167863716|gb|EDS27099.1| exosome component 6 [Culex quinquefasciatus]
Length = 246
Score = 52.9 bits (125), Expect = 4e-05, Method: Composition-based stats.
Identities = 29/131 (22%), Positives = 56/131 (42%), Gaps = 5/131 (3%)
Query: 16 LTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGNRVK 75
+ V A+GS ++ G+T ++ + ++P + G + + P + +R
Sbjct: 1 MKLGVVSTAKGSAYLELGNTKVIVSVFDPREIPKQNTFRELGELYCDLKFSPFACVHRKN 60
Query: 76 REAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWV 135
+ + + + + +AL+ VV + QI I +V++ DG A IT A +
Sbjct: 61 PQTDAEERS-----LAAAMTKALQPVVCRHLFPNFQIDIFANVLEDDGSVLGAVITAAGL 115
Query: 136 ALHDCLQHMED 146
AL D M D
Sbjct: 116 ALSDATISMFD 126
>gi|156086228|ref|XP_001610523.1| exosome complex exonuclease rrp41 [Babesia bovis T2Bo]
gi|154797776|gb|EDO06955.1| exosome complex exonuclease rrp41, putative [Babesia bovis]
Length = 259
Score = 52.9 bits (125), Expect = 4e-05, Method: Composition-based stats.
Identities = 36/213 (16%), Positives = 72/213 (33%), Gaps = 15/213 (7%)
Query: 1 MRLSGRQENQMREISL----TRRV-SKYAEGSCLVKFGDTHLLTTATLEEKVPM--WIRN 53
+R+ GR+ +++R I + V +G V G T + +
Sbjct: 12 LRIDGRRPSEVRHIDILCGPECGVDIINYDGVAQVTQGLTKVQAFINGPTDIGRSKTKEG 71
Query: 54 TKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQII 113
+ E R R + EI R + V+ + I
Sbjct: 72 FETADSPVEIRCEVCIPSERKSM---GHRNNDATVEISRAVVGTFEPVIISHLYKNSTIH 128
Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMED-----CSNKFQLSQVLKGHVAAISCGM 168
I +V++ADGG + I +AL D M+D + + ++ + I+ +
Sbjct: 129 IFVNVLEADGGVKATVINAVLIALIDAGIAMKDIIVACTAVMLNETLLIDPNQLEINASI 188
Query: 169 LCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVE 201
+ + + E ID+ + + + I+E
Sbjct: 189 MELTLALSVSNEELIHIDLRSKYPIKSYAEIIE 221
>gi|312076508|ref|XP_003140893.1| hypothetical protein LOAG_05308 [Loa loa]
gi|307763947|gb|EFO23181.1| hypothetical protein LOAG_05308 [Loa loa]
Length = 264
Score = 52.9 bits (125), Expect = 4e-05, Method: Composition-based stats.
Identities = 38/233 (16%), Positives = 80/233 (34%), Gaps = 4/233 (1%)
Query: 9 NQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPR 68
N R I + +G+ V+FG T ++ + +++ +
Sbjct: 32 NSFRSIVMQTGALHDQKGTVYVEFGSTKIICSVDGPKEITKSADVNPTEGQVYVFLKNIS 91
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
+ GN V S + + ALRS+V L QI ++ V+ DGG A
Sbjct: 92 TEGNAVSGSNSSSVSNKEINGTRNAVESALRSIVCLELFCKAQIDVEITVLNDDGGVLAA 151
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
++ + +AL D + D V+ I YP + E+ + +
Sbjct: 152 SLIASSLALVDSGIQVYDVC--VAAHIVMLTDGRIIVDPSTNSYPFSSIPDSEEFSGNTH 209
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQ-DHFFAMLNLAKDRIADLIKLQKDVISN 240
+ + + ++ E ++ + +A + L L + +++
Sbjct: 210 LSVTVGMMPSLNQL-ACCEFVGIAEPHQLRHAITVAVESSLKLYPLVRKTLTS 261
>gi|195499795|ref|XP_002097098.1| GE26036 [Drosophila yakuba]
gi|194183199|gb|EDW96810.1| GE26036 [Drosophila yakuba]
Length = 227
Score = 52.9 bits (125), Expect = 4e-05, Method: Composition-based stats.
Identities = 31/234 (13%), Positives = 71/234 (30%), Gaps = 31/234 (13%)
Query: 9 NQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPR 68
+++R++ +GS + G T L+ +V + ++ Y
Sbjct: 6 DKLRQMHCEFNPLSRCDGSVMYSQGATGLIGAVLGPIEVKTQNLSIDGSYLECNYRPKAG 65
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
+ + + I L + A ++ + ++ G
Sbjct: 66 L-------------PQVKERIREAAIRDVLELALLSEAHPRSKMSVQIQELEDRGSIDAC 112
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG-YPIVDLDYGEDSTIDV 187
A+ A +A+ LK AA+ C + ++D D E
Sbjct: 113 AVNCACLAM-------------LIGGLPLKCSFAAVHCIINEQGEYVLDPDQSETLHQRA 159
Query: 188 DANFVMTD-SGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
F G+++ VQ + F F + L + A++ + + ++
Sbjct: 160 SFTFAFDSVEGNLLLVQ---TKGAFKIAQFNDIECLCRSASAEIFQFYRSQVAK 210
>gi|300176535|emb|CBK24200.2| unnamed protein product [Blastocystis hominis]
Length = 600
Score = 52.9 bits (125), Expect = 4e-05, Method: Composition-based stats.
Identities = 22/126 (17%), Positives = 49/126 (38%), Gaps = 4/126 (3%)
Query: 16 LTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGNRVK 75
++ V K A GS V+ G+ ++ + + + G + ++ P + K
Sbjct: 7 ISTGVVKNASGSAYVELGNMKIMCSVQGPRDSFRSVDSQDKGALYCDFKYAPFA----QK 62
Query: 76 REAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWV 135
++ + ++ + L + VDL A + + V++ DG ++ A +
Sbjct: 63 DVYQPNLLNRETKSMSLLLEKILSTSVDLEAFPKAVVELYIMVLEVDGDPLGLSLMCASL 122
Query: 136 ALHDCL 141
AL D
Sbjct: 123 ALTDAG 128
>gi|110589244|gb|ABG77131.1| polyribonucleotide nucleotidyltransferase [Endoriftia persephone
'Hot96_1+Hot96_2']
Length = 137
Score = 52.5 bits (124), Expect = 4e-05, Method: Composition-based stats.
Identities = 8/44 (18%), Positives = 17/44 (38%)
Query: 198 HIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
I +Q + +++ L AK+ ++ VIS+
Sbjct: 33 GINALQMDIKINGITKEIMEIALEQAKEGRLHILDEMNRVISSH 76
>gi|145251293|ref|XP_001397160.1| 3' exoribonuclease family protein [Aspergillus niger CBS 513.88]
gi|134082691|emb|CAK42584.1| unnamed protein product [Aspergillus niger]
Length = 324
Score = 52.5 bits (124), Expect = 5e-05, Method: Composition-based stats.
Identities = 33/277 (11%), Positives = 72/277 (25%), Gaps = 51/277 (18%)
Query: 6 RQENQMREISLTRRVSKYAEGSCLVK----------FGDTHLL----------TTATLEE 45
RQ +++R+I L + A GS ++ + L T +
Sbjct: 38 RQPDELRKIFLKTGLIPSASGSSYLEFEPSASLAAARSNPQSLIPPSSALKLACTVHGPK 97
Query: 46 KVPMWIRNTKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLS 105
+P + + +T P + R +++ + ALR V+
Sbjct: 98 PLPRSASFSPNVVLTTHVKYAPFAARQRKGHIR-----DASERDLGVHLETALRGVIVAE 152
Query: 106 ALGSRQIIIDCDVIQADGGTRTAAITGAWVALHD-----CLQHMEDCSNKFQLSQVLKGH 160
+ I +++A+ + A +
Sbjct: 153 RWPKSGLDITITILEAEDDRWWGDAPDSHDAPWGMMNVLAGCITAASAAIADARIDCLDL 212
Query: 161 VAAISCGMLCGYPIVDLDYGEDSTIDVD-----------ANFVMTDSGHIVEVQGSAERA 209
VA ++ P +D D M I E+ + +
Sbjct: 213 VAGGVAAIVSDEPAEGESSTPKLMLDTDPAEHKSILSACVVAYMPSRDEITELWLKGDHS 272
Query: 210 ---------TFSQDHFFA-MLNLAKDRIADLIKLQKD 236
+ + + +N A+ L + K+
Sbjct: 273 KASLGTTDQSLTHESLIDGAVNAARGAHTVLAEAVKE 309
>gi|150864479|ref|XP_001383313.2| exosome exoribonuclease [Scheffersomyces stipitis CBS 6054]
gi|149385735|gb|ABN65284.2| exosome exoribonuclease [Scheffersomyces stipitis CBS 6054]
Length = 289
Score = 52.5 bits (124), Expect = 5e-05, Method: Composition-based stats.
Identities = 26/261 (9%), Positives = 66/261 (25%), Gaps = 32/261 (12%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKV-------------- 47
R+ G +R L + + A GS ++ G+ + + +
Sbjct: 34 RIDG-----LRPFFLKTGIIENANGSSYLEVGNNIIEVSVYGPRPIRGSFIDRASFSVEC 88
Query: 48 -----PMWIRNTKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVV 102
+ + +T +I I +L +
Sbjct: 89 KFLPFISQPNEHLYNNTSISASSAANTTNQTNVNVNGRTGLTSIEHKISSYIETSLLPSI 148
Query: 103 DLSALGSRQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVA 162
L I + +I D + ++L + +K V
Sbjct: 149 VLEKYPKSTIDVFVTIISTDSSLGGSYSDTKMLSLVN-WVLNASSVALVDSGIEVKDVVT 207
Query: 163 AISCGMLCGYPIVDLDYGEDSTIDVDANFVMT---DSGHIVEVQGSAERATFSQDHFFAM 219
+ + ++D ++ + + IV + ++ +
Sbjct: 208 SGVAHLQNDVLVLDPTEIQEKDEGSVSCVASFMNLRNDEIVGIWIEGDQTNLENSQVDHL 267
Query: 220 LNLAKDRIADLIKLQKDVISN 240
L+ D+ K + I++
Sbjct: 268 LD----GCNDMSKKVRANINS 284
>gi|312370650|gb|EFR18995.1| hypothetical protein AND_23239 [Anopheles darlingi]
Length = 261
Score = 52.5 bits (124), Expect = 5e-05, Method: Composition-based stats.
Identities = 30/227 (13%), Positives = 78/227 (34%), Gaps = 12/227 (5%)
Query: 16 LTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGNRVK 75
L V A+GS ++ G+T + + ++P + G + ++ P ++ R
Sbjct: 10 LKVGVVSTAKGSAYIELGNTKAIVSVFDPREIPKQSKYCALGELYCDFKFSPFASHLRKT 69
Query: 76 REAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWV 135
++ + + + + V + Q+ + +V++ DG A IT A +
Sbjct: 70 PQSDTRGRSLAAALASAL-----NPAVCRHLFPNLQLDVFANVLEDDGSVLAAVITAAGL 124
Query: 136 ALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTD 195
AL D M D + + + + ++ + +
Sbjct: 125 ALADACIPMFDIVTATTAGILGDRILVDPTAEEE----RLCMEGFTRDNHGIVMLAKLPT 180
Query: 196 SGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNEV 242
+ E++ S + S + + + + + + V+ ++V
Sbjct: 181 LDQVPEIRHSG---SVSVETLWRACTRLNAACTEQVPIVQHVLVSKV 224
>gi|24645688|ref|NP_650001.2| Rrp46 [Drosophila melanogaster]
gi|23170911|gb|AAF54530.3| Rrp46 [Drosophila melanogaster]
gi|212287964|gb|ACJ23457.1| FI06805p [Drosophila melanogaster]
Length = 233
Score = 52.5 bits (124), Expect = 5e-05, Method: Composition-based stats.
Identities = 29/234 (12%), Positives = 70/234 (29%), Gaps = 31/234 (13%)
Query: 9 NQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPR 68
+++R++ +GS + G T L+ +V + ++ Y
Sbjct: 12 DKLRQMHCEFNPLSRCDGSVMYSQGATGLIGAVLGPIEVKTQNLSIDGSYLECNYRPKAG 71
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
+ + I L + A ++ + ++ G
Sbjct: 72 L-------------PQVTDRIREAAIRDVLELALLSEAHPRSKMSVQIQELEDRGSIDAC 118
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG-YPIVDLDYGEDSTIDV 187
A+ A +A+ LK AA+ + ++D D E
Sbjct: 119 AVNCACLAM-------------LIGGLPLKYSFAAVHAIINEQGEYVLDPDQSETLHQRA 165
Query: 188 DANFVMTD-SGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
F G+++ +Q + +F F + L A++ + ++ ++
Sbjct: 166 SFTFAFDSVEGNLLLIQ---TKGSFKIAQFNDIECLCLAASAEIFQFYRNQVAK 216
>gi|323508000|emb|CBQ67871.1| related to exosome complex exonuclease [Sporisorium reilianum]
Length = 379
Score = 52.5 bits (124), Expect = 5e-05, Method: Composition-based stats.
Identities = 11/43 (25%), Positives = 16/43 (37%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE 44
R GR R + + V+ A GS + G T + E
Sbjct: 25 RSDGRHLLAFRSLDVDTGVAAQANGSSQITLGGTEIFCGIKAE 67
>gi|170103316|ref|XP_001882873.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164642244|gb|EDR06501.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 247
Score = 52.5 bits (124), Expect = 5e-05, Method: Composition-based stats.
Identities = 30/229 (13%), Positives = 57/229 (24%), Gaps = 13/229 (5%)
Query: 11 MREISLTRRVSKYAEGSCLVKFG-DTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRS 69
MR + L+ +GS FG +TH L + + +V + L
Sbjct: 1 MRSLHLSYEHLARTDGSARFGFGPNTHALASLSGPIEVRLAAELPSQATFEVHVRPLSNV 60
Query: 70 TGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAA 129
K A + I R L +V + SR +
Sbjct: 61 PATEAKALASIVKSALSPSLILSRNPRTLVQLVVQALSPSRDGSGMVAAMINAATLAFLN 120
Query: 130 ITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDA 189
+ C + + + V + G +L + E + V
Sbjct: 121 AGSIPMKGIICAMPVGRRVGGELVVDPSEEEVEVEATGCFAFLVTQNLGHQEMTASCVHT 180
Query: 190 NFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
++ + D LAK + ++ +
Sbjct: 181 SW------------KEGGVGSSGLDDLVRATELAKGAALVIADEMRESL 217
>gi|153791339|ref|NP_001093283.1| mRNA transport regulator 3 [Bombyx mori]
gi|95103116|gb|ABF51499.1| mRNA transport regulator 3 [Bombyx mori]
Length = 268
Score = 52.2 bits (123), Expect = 6e-05, Method: Composition-based stats.
Identities = 34/221 (15%), Positives = 75/221 (33%), Gaps = 12/221 (5%)
Query: 18 RRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGNRVKRE 77
+ A+GS V+ T ++ + ++P + G + E P S + +
Sbjct: 21 TDMVSQAKGSAYVELRKTKVVCSVFDPREIPHQNEFRQLGQLYCEVKFAPFSCPRKRRPY 80
Query: 78 AVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVAL 137
+ + + +AL V QI + +++ DG AAI A +AL
Sbjct: 81 V----PDVEEKALSVALRQALEPAVCRHFFPDYQIDVLIYILEHDGSCLAAAINAAGLAL 136
Query: 138 HDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSG 197
+ M D + VA I M P ++ ++ST M+
Sbjct: 137 ANAAVPMFD--------IITSCSVAVIGHQMFIDPPEIEEHIAKNSTEVNPGIITMSVLS 188
Query: 198 HIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
+ ++ + + + ++ + ++ + V+
Sbjct: 189 QLKQISDFTQIGSMDVECVTKVMEVLLKECEIIVPNIQRVL 229
>gi|195354294|ref|XP_002043633.1| GM15571 [Drosophila sechellia]
gi|194127801|gb|EDW49844.1| GM15571 [Drosophila sechellia]
Length = 327
Score = 52.2 bits (123), Expect = 6e-05, Method: Composition-based stats.
Identities = 42/240 (17%), Positives = 72/240 (30%), Gaps = 19/240 (7%)
Query: 12 REISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPM-WIRNTKHGWITAEYGMLPRST 70
R + V GS +++G+T +LT +++ R G + T
Sbjct: 48 RNTFIRAGVLTTVRGSAYMEYGNTKVLTIVAPPKELIRASARRMNMGVLNCYVNFAAFGT 107
Query: 71 GNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAI 130
G+ R + + M+ +AL VV + + Q+ I ++ DG + AI
Sbjct: 108 GDLDSVP-------ERERYLSSMLTKALEPVVCRTEFLNFQLDIRVLILDDDGCLLSTAI 160
Query: 131 TGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAIS--------CGMLCGYPIVDLDYGED 182
VAL +C D S
Sbjct: 161 NCCGVALVECGISTYDLITASTACIYRDHVFLNPSAKIEELLWKHRSNSGTDSTTSSSSV 220
Query: 183 STIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNEV 242
+ M I + Q S D + +L+ D L +L K V++ V
Sbjct: 221 QEHGLIITASMDTFEQIAQCQQCGY---LSPDTYVKLLDYTLDMNKSLRELVKGVLTKRV 277
>gi|322692770|gb|EFY84660.1| 3' exoribonuclease [Metarhizium acridum CQMa 102]
Length = 283
Score = 52.2 bits (123), Expect = 6e-05, Method: Composition-based stats.
Identities = 19/118 (16%), Positives = 34/118 (28%), Gaps = 12/118 (10%)
Query: 6 RQENQMREISLTRRVSKYAEGSCLVKFGDT-------HLLTTATLEEKVPMWIRNTKHGW 58
R N +R L V+ A GS ++ + T +P + H
Sbjct: 31 RNNNDVRPFYLKTGVTPSASGSAYLEIDQSTGSGFGMKFTCTVHGPRSLPRSAPFSPHMV 90
Query: 59 ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
I+ P +T R +++ + ALR V + +
Sbjct: 91 ISTHVKYAPFATRQRRGYLR-----DASERDLSIHLETALRGAVIADRWPKSGVEVVV 143
>gi|322709903|gb|EFZ01478.1| 3' exoribonuclease [Metarhizium anisopliae ARSEF 23]
Length = 283
Score = 52.2 bits (123), Expect = 6e-05, Method: Composition-based stats.
Identities = 19/118 (16%), Positives = 34/118 (28%), Gaps = 12/118 (10%)
Query: 6 RQENQMREISLTRRVSKYAEGSCLVKFGDT-------HLLTTATLEEKVPMWIRNTKHGW 58
R N +R L V+ A GS ++ + T +P + H
Sbjct: 31 RNNNDVRPFYLKTGVTPSASGSAYLEIDQSTGSGFGMKFTCTVHGPRSLPRSAPFSPHMV 90
Query: 59 ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
I+ P +T R +++ + ALR V + +
Sbjct: 91 ISTHVKYAPFATRQRKGYLR-----DASERDLSIHLETALRGAVIADRWPKSGVEVVV 143
>gi|302406703|ref|XP_003001187.1| 3' exoribonuclease family protein [Verticillium albo-atrum
VaMs.102]
gi|261359694|gb|EEY22122.1| 3' exoribonuclease family protein [Verticillium albo-atrum
VaMs.102]
Length = 251
Score = 52.2 bits (123), Expect = 6e-05, Method: Composition-based stats.
Identities = 22/121 (18%), Positives = 39/121 (32%), Gaps = 15/121 (12%)
Query: 6 RQENQMREISLTRRVSKYAEGSCLVKF----G--DTHL----LTTATLEEKVPMWIRNTK 55
R N MR + L ++ A GS + G DTH + T +P +
Sbjct: 53 RPANTMRNLFLKTGIAPAASGSAYAEIEAPAGVSDTHAGMKLICTVHGPRALPRSAPFSP 112
Query: 56 HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115
+ ++ P +T R +++ + ALR VV + +
Sbjct: 113 YLVLSTHVKYAPFATRQRRGYLR-----DASERDLSVHLETALRGVVIGERWPKSGVDVT 167
Query: 116 C 116
Sbjct: 168 V 168
>gi|171185942|ref|YP_001794861.1| exosome complex exonuclease Rrp41 [Thermoproteus neutrophilus
V24Sta]
gi|170935154|gb|ACB40415.1| exosome complex exonuclease Rrp41 [Thermoproteus neutrophilus
V24Sta]
Length = 50
Score = 52.2 bits (123), Expect = 6e-05, Method: Composition-based stats.
Identities = 12/30 (40%), Positives = 19/30 (63%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLV 30
+R GR +QMRE+ ++ V A+GS +V
Sbjct: 13 VRADGRAPDQMREVQISVGVISNADGSAMV 42
>gi|149066120|gb|EDM15993.1| exosome component 4 (predicted), isoform CRA_b [Rattus norvegicus]
Length = 211
Score = 52.2 bits (123), Expect = 6e-05, Method: Composition-based stats.
Identities = 43/189 (22%), Positives = 69/189 (36%), Gaps = 21/189 (11%)
Query: 55 KHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIII 114
+ +Y STG R +R + S E+ + + + + QI I
Sbjct: 34 DRALVNCQYSSATFSTGERKRRPHGDRK----SCEMGLQLRQTFEAAILTQLHPRSQIDI 89
Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPI 174
V+QADGGT A + A +A+ D M D V A S G + G +
Sbjct: 90 YVQVLQADGGTYAACVNAATLAVMDAGIPMRDF-------------VCACSAGFVDGTAL 136
Query: 175 VDLDYGEDSTIDVDANFVM-TDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
DL + E++ + SG I ++ + +DH +L A D+ L
Sbjct: 137 ADLSHVEEAAGGPQLALALLPASGQIALLEMDSR---LHEDHLEQVLEAAAQAARDVHTL 193
Query: 234 QKDVISNEV 242
V+ V
Sbjct: 194 LDRVVRQHV 202
>gi|67903390|ref|XP_681951.1| hypothetical protein AN8682.2 [Aspergillus nidulans FGSC A4]
gi|40740914|gb|EAA60104.1| hypothetical protein AN8682.2 [Aspergillus nidulans FGSC A4]
Length = 413
Score = 52.2 bits (123), Expect = 6e-05, Method: Composition-based stats.
Identities = 13/44 (29%), Positives = 19/44 (43%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE 44
+R +GR Q R S + GS +V+ GDT + E
Sbjct: 47 IRANGRSPQQFRVTSANTGSLTHTNGSAVVRVGDTTAVCGIKAE 90
>gi|323191726|gb|EFZ76978.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Montevideo str. 609458-1]
Length = 222
Score = 52.2 bits (123), Expect = 7e-05, Method: Composition-based stats.
Identities = 10/54 (18%), Positives = 22/54 (40%), Gaps = 1/54 (1%)
Query: 186 DVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
D+D + G I +Q + +++ LN AK ++ + + I+
Sbjct: 1 DMDFKVAGSRDG-ISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQAIN 53
>gi|73974732|ref|XP_857418.1| PREDICTED: similar to Exosome complex exonuclease RRP41 (Ribosomal
RNA processing protein 41) (Exosome component 4) (p12A)
isoform 3 [Canis familiaris]
Length = 226
Score = 52.2 bits (123), Expect = 7e-05, Method: Composition-based stats.
Identities = 42/189 (22%), Positives = 68/189 (35%), Gaps = 21/189 (11%)
Query: 55 KHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIII 114
+ +Y STG R +R + S E+ + + + + QI I
Sbjct: 49 DRALVNCQYSSATFSTGERKRRPHGDRK----SCEMGLHLRQTFEAAILTQLHPRSQIDI 104
Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPI 174
V+QADGGT A + A +A+ D M D V A S G + +
Sbjct: 105 YVQVLQADGGTYAACVNAATLAVLDAGIPMRDF-------------VCACSAGFVDNTAL 151
Query: 175 VDLDYGEDSTIDVDANFVM-TDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
DL + E++ + SG I ++ A +DH +L A D+ +
Sbjct: 152 ADLSHVEEAAGGPQLALALLPASGQIALLEMDAR---LHEDHLEQVLEAAARAARDVHTV 208
Query: 234 QKDVISNEV 242
V+ V
Sbjct: 209 LDRVVRQHV 217
>gi|19113410|ref|NP_596618.1| exosomal 3'-5' exoribonuclease, PH-like [Schizosaccharomyces pombe
972h-]
gi|74638748|sp|Q9P7R3|MTR3_SCHPO RecName: Full=Exosome complex component mtr3
gi|6983772|emb|CAB75416.1| exosomal 3'-5' exoribonuclease, PH-like [Schizosaccharomyces pombe]
Length = 257
Score = 51.8 bits (122), Expect = 8e-05, Method: Composition-based stats.
Identities = 35/229 (15%), Positives = 64/229 (27%), Gaps = 19/229 (8%)
Query: 6 RQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGM 65
R ++ R+I L + A GS + + T + + + E+ +
Sbjct: 30 RDVDRCRKIYLKLGWATKAVGSSYFESEKIKIACTVSGPRPSKTFA-FRSSAKLNCEFRL 88
Query: 66 LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125
P ST R Q + +MI A+ + L I +
Sbjct: 89 SPFSTSVRQGHV-----QTVEEKSYSQMIEAAISPSILLHLYPKSSIDVYIQ-------- 135
Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185
GA L + + + +++ +D DY ++
Sbjct: 136 -VIESDGALATLAAAISCASSAIADANIDCIDLVTGSSVLFNPNTDEYWIDPDYVDERAR 194
Query: 186 DVDANFVMTDSGHIVEVQGSAERATFSQDHF----FAMLNLAKDRIADL 230
+ VM + V ER T S + AKD +
Sbjct: 195 AAKGSVVMGYMASLGHVTQVWERGTCSPSRLSFLTEKCIKNAKDTRLVI 243
>gi|321260198|ref|XP_003194819.1| hypothetical protein CGB_F4390W [Cryptococcus gattii WM276]
gi|317461291|gb|ADV23032.1| conserved hypothetical protein [Cryptococcus gattii WM276]
Length = 332
Score = 51.8 bits (122), Expect = 8e-05, Method: Composition-based stats.
Identities = 14/43 (32%), Positives = 19/43 (44%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE 44
R R R I ++ V A GS VK G T +++ LE
Sbjct: 28 RNDARPLFASRPIQISYGVFPQANGSAQVKLGGTEIVSGVKLE 70
>gi|296823694|ref|XP_002850484.1| 3' exoribonuclease family protein [Arthroderma otae CBS 113480]
gi|238838038|gb|EEQ27700.1| 3' exoribonuclease family protein [Arthroderma otae CBS 113480]
Length = 415
Score = 51.8 bits (122), Expect = 8e-05, Method: Composition-based stats.
Identities = 12/40 (30%), Positives = 20/40 (50%)
Query: 5 GRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE 44
GR + Q R +S++ + GS +V+ GDT + E
Sbjct: 56 GRTDAQFRPVSVSTGSLTHTNGSAVVRIGDTAAVCGVRAE 95
>gi|289742861|gb|ADD20178.1| exosomal 3'-5' exoribonuclease complex subunit Rrp46 [Glossina
morsitans morsitans]
Length = 245
Score = 51.8 bits (122), Expect = 9e-05, Method: Composition-based stats.
Identities = 28/233 (12%), Positives = 59/233 (25%), Gaps = 31/233 (13%)
Query: 7 QENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGML 66
+ ++R ++ +GS L G T +L + +V + + Y
Sbjct: 16 KNTKLRTLNCELNPLTRTDGSTLFIQGATCVLASMLGPVEVKLQNLKIDKAHVDCIYRPK 75
Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
R K + + + + R L S+
Sbjct: 76 AGLPTIRDKIRETMIKDTCEAALLSALHPRTLISIQLQELDDR----------------- 118
Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG-YPIVDLDYGEDSTI 185
D C +K VAA+ C + ++D D + +
Sbjct: 119 ---------GGLDACAINAACMALLIGGVPMKFTVAAVHCVVDKNGEIVLDPDQLQAADN 169
Query: 186 DVDAN-FVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
+ +V V F + F + + L +++
Sbjct: 170 RASFTFVFDSVERDLVAVHSFG---CFKINQFKDAHLICLAASSTLFDFYREI 219
>gi|76157078|gb|AAX28121.2| SJCHGC04363 protein [Schistosoma japonicum]
Length = 103
Score = 51.8 bits (122), Expect = 9e-05, Method: Composition-based stats.
Identities = 18/54 (33%), Positives = 24/54 (44%), Gaps = 2/54 (3%)
Query: 2 RLSGRQENQMREISLTR--RVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRN 53
RL GR N+ REIS G C+VK G T ++ ++E P R
Sbjct: 19 RLDGRSINEYREISFRFPQGKDPNISGCCVVKIGATTVMAQVSVEVIEPKHFRP 72
>gi|195591661|ref|XP_002085557.1| GD12240 [Drosophila simulans]
gi|194197566|gb|EDX11142.1| GD12240 [Drosophila simulans]
Length = 327
Score = 51.4 bits (121), Expect = 9e-05, Method: Composition-based stats.
Identities = 41/240 (17%), Positives = 75/240 (31%), Gaps = 19/240 (7%)
Query: 12 REISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPM-WIRNTKHGWITAEYGMLPRST 70
R + V GS +++G+T +L +++ R G + T
Sbjct: 48 RNTFIRAGVLTTVRGSAYMEYGNTKVLAIVAPPKELIRASARRMNMGVLNCYVNFAAFGT 107
Query: 71 GNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAI 130
G+ R + + M+ +AL VV + + Q+ I ++ DG + AI
Sbjct: 108 GDLESVP-------ERERHLSSMLTKALEPVVCRTEFLNFQLDIRVLILDDDGCLLSTAI 160
Query: 131 TGAWVALHDCLQHMEDCSNKFQLSQVLKG---HVAAISCGMLCGY-----PIVDLDYGED 182
VAL +C D + +A +L +
Sbjct: 161 NCCGVALVECGISTYDLITASTACIYRDHVFLNPSAKIEELLWKHRSNSGTDSTTSPSSA 220
Query: 183 STIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNEV 242
+ M I + Q S + +L+ D L +L K V++ V
Sbjct: 221 QEHGLIITASMDTFEQIAQCQQCGY---LSPATYVKLLDYTLDMNKSLRELVKGVLTKRV 277
>gi|124513540|ref|XP_001350126.1| exoribonuclease PH, putative [Plasmodium falciparum 3D7]
gi|23615543|emb|CAD52535.1| exoribonuclease PH, putative [Plasmodium falciparum 3D7]
Length = 278
Score = 51.4 bits (121), Expect = 1e-04, Method: Composition-based stats.
Identities = 36/264 (13%), Positives = 75/264 (28%), Gaps = 33/264 (12%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+R+ GR R I + + + +GS V + +++ L P + G +
Sbjct: 15 IRIDGRTLLTYRSIEINKNILVSGDGSSSVINEENNVICGIKLSLITPD-VDTYDEGNVN 73
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI- 119
+ NR+K++ + I + + G +D +V+
Sbjct: 74 LQIDCPASVAANRIKKDHLQTMTTIIYNLC---IKNNINKKILCILPGKFAWSVDINVMV 130
Query: 120 -QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQ----------------------LSQV 156
A GG +VAL D + + + ++
Sbjct: 131 LNAGGGLLDIISIAIYVALKDTFFPIVKPKKEIEEENTFHEISNKDYQLEIVENEHVNFP 190
Query: 157 LKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDH- 215
+ IS G + I D+ E+ + +T G V + S +
Sbjct: 191 YENIPICISIGEINNKYIYDMSKVEEELVQNIFVVAITSKGKCVAFH---KLYGISMEIS 247
Query: 216 -FFAMLNLAKDRIADLIKLQKDVI 238
+ + L +
Sbjct: 248 SILNITENSSKISHTLFDKIHQAL 271
>gi|255725482|ref|XP_002547670.1| hypothetical protein CTRG_01977 [Candida tropicalis MYA-3404]
gi|240135561|gb|EER35115.1| hypothetical protein CTRG_01977 [Candida tropicalis MYA-3404]
Length = 299
Score = 51.4 bits (121), Expect = 1e-04, Method: Composition-based stats.
Identities = 30/264 (11%), Positives = 72/264 (27%), Gaps = 27/264 (10%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+RLS R+ +++R I + SKY G + +G T L+ + P + G T
Sbjct: 21 IRLSNRKFDELRSIDIKLSDSKY--GYVELTWGSTKLIVNISARIIEP-YKDRPFEGIFT 77
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQII-IDCDVI 119
+ + E + R +S + ++ + I +
Sbjct: 78 INCELPNNLKSEEIIDENLLSRTLEKSIRRSNSLDLENLCIIAGEKVWEIIIDLNYLNYD 137
Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHV------------------ 161
+ AI + + + +
Sbjct: 138 GNLIDSGCLAIMIGLLDFKKNDISVTSNGGIKIFDLDERQPIELSILHIPICLTFSFFNL 197
Query: 162 ----AAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFF 217
+ + ++D D E+ D + + ++++ +
Sbjct: 198 GSKEMNLKSDEINEIYLLDADSLEEYCRDGFLTITLNQNRDLIQLNKNG-GLPIDAQQLL 256
Query: 218 AMLNLAKDRIADLIKLQKDVISNE 241
+ + + + I L L K +
Sbjct: 257 QLCHNSMEIIDKLTNLIKTTVKTH 280
>gi|156844653|ref|XP_001645388.1| hypothetical protein Kpol_534p9 [Vanderwaltozyma polyspora DSM
70294]
gi|156116050|gb|EDO17530.1| hypothetical protein Kpol_534p9 [Vanderwaltozyma polyspora DSM
70294]
Length = 266
Score = 51.4 bits (121), Expect = 1e-04, Method: Composition-based stats.
Identities = 8/30 (26%), Positives = 14/30 (46%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLV 30
+R GR+ Q R I ++ + GS +
Sbjct: 21 IRPDGRKPYQFRPIEISTDFLPNSNGSSRI 50
>gi|302918312|ref|XP_003052633.1| predicted protein [Nectria haematococca mpVI 77-13-4]
gi|256733573|gb|EEU46920.1| predicted protein [Nectria haematococca mpVI 77-13-4]
Length = 336
Score = 51.4 bits (121), Expect = 1e-04, Method: Composition-based stats.
Identities = 13/43 (30%), Positives = 20/43 (46%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE 44
R + R +R S+ +A GS LV+ GDT ++ E
Sbjct: 35 RSNRRAPTDVRIPSVNASSLSHAHGSSLVRMGDTTVICGVRGE 77
>gi|317033489|ref|XP_001395918.2| 3' exoribonuclease family protein [Aspergillus niger CBS 513.88]
Length = 403
Score = 51.4 bits (121), Expect = 1e-04, Method: Composition-based stats.
Identities = 12/44 (27%), Positives = 19/44 (43%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE 44
+R +GR +Q R S + GS +V+ G T + E
Sbjct: 43 IRANGRAPSQFRVTSANTGSLTHTNGSAVVRVGGTTAVCGVRAE 86
>gi|313895526|ref|ZP_07829082.1| hypothetical protein HMPREF9162_1557 [Selenomonas sp. oral taxon
137 str. F0430]
gi|312975652|gb|EFR41111.1| hypothetical protein HMPREF9162_1557 [Selenomonas sp. oral taxon
137 str. F0430]
Length = 55
Score = 51.0 bits (120), Expect = 1e-04, Method: Composition-based stats.
Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRN 53
R I + ++K A G+ LV++GDT +L TAT +
Sbjct: 11 RNIIVEHGKMAKQANGAALVRYGDTVVLVTATASSAPREGVDF 53
>gi|85108995|ref|XP_962696.1| hypothetical protein NCU08026 [Neurospora crassa OR74A]
gi|28924307|gb|EAA33460.1| conserved hypothetical protein [Neurospora crassa OR74A]
gi|39979134|emb|CAE85508.1| conserved hypothetical protein [Neurospora crassa]
Length = 286
Score = 51.0 bits (120), Expect = 1e-04, Method: Composition-based stats.
Identities = 27/255 (10%), Positives = 62/255 (24%), Gaps = 23/255 (9%)
Query: 6 RQENQMREISLTRRVSKYAEGSCLVKF-----GDT--HLLTTATLEEKVPMWIRNTKHGW 58
R N +R++ L V+ A GS ++ G + L + +P + H
Sbjct: 36 RPANVIRKMYLKTGVTPSASGSAYLEIESSGNGGSGLKLSCSVHGPRALPRSTPFSPHII 95
Query: 59 ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEI-----QRMIGR------ALRSVVDLSAL 107
++ P +T R + + + R + +
Sbjct: 96 LSTHVKFAPFATKQRRGYIRDPIERDLGTHLETALRGSIIADRWPKSGVDIIISIVEGEQ 155
Query: 108 GSRQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCG 167
+ IT A AL D D + V
Sbjct: 156 DRETSKAQGIEAWDTMNALSGCITVASAALADAGIDCVDTVAGGVAALVQD-----AGND 210
Query: 168 MLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRI 227
+ + + + + + + + D + ++
Sbjct: 211 AAPSIVVDPIPSEHEKVLAACCIAYLPTRQEVTNLWFKGDLPASDMDVYTQLIEKGIQAS 270
Query: 228 ADLIKLQKDVISNEV 242
++ D ++ V
Sbjct: 271 KSANRVLVDCLNETV 285
>gi|119467182|ref|XP_001257397.1| 3' exoribonuclease family protein [Neosartorya fischeri NRRL 181]
gi|119405549|gb|EAW15500.1| 3' exoribonuclease family protein [Neosartorya fischeri NRRL 181]
Length = 411
Score = 51.0 bits (120), Expect = 1e-04, Method: Composition-based stats.
Identities = 13/44 (29%), Positives = 20/44 (45%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE 44
+R +GR +Q R S + GS +V+ GDT + E
Sbjct: 48 IRANGRATSQFRVTSANTGSLTHTNGSAVVRIGDTAAVCGVRAE 91
>gi|70984709|ref|XP_747861.1| 3' exoribonuclease family protein [Aspergillus fumigatus Af293]
gi|66845488|gb|EAL85823.1| 3' exoribonuclease family protein [Aspergillus fumigatus Af293]
Length = 411
Score = 51.0 bits (120), Expect = 1e-04, Method: Composition-based stats.
Identities = 13/44 (29%), Positives = 20/44 (45%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE 44
+R +GR +Q R S + GS +V+ GDT + E
Sbjct: 48 IRANGRATSQFRVTSANTGSLTHTNGSAVVRIGDTAAVCGVRAE 91
>gi|159122645|gb|EDP47766.1| 3' exoribonuclease family protein [Aspergillus fumigatus A1163]
Length = 411
Score = 51.0 bits (120), Expect = 1e-04, Method: Composition-based stats.
Identities = 13/44 (29%), Positives = 20/44 (45%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE 44
+R +GR +Q R S + GS +V+ GDT + E
Sbjct: 48 IRANGRATSQFRVTSANTGSLTHTNGSAVVRIGDTAAVCGVRAE 91
>gi|150865099|ref|XP_001384176.2| hypothetical protein PICST_59559 [Scheffersomyces stipitis CBS
6054]
gi|149386355|gb|ABN66147.2| predicted protein [Scheffersomyces stipitis CBS 6054]
Length = 307
Score = 51.0 bits (120), Expect = 2e-04, Method: Composition-based stats.
Identities = 35/269 (13%), Positives = 75/269 (27%), Gaps = 31/269 (11%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+RL R+ +++RE + +SK G + +G T L + + P R + +
Sbjct: 23 LRLDSRRFDEIREPQI--SLSKTEFGYVELDWGLTKLAVRVSAQIGKPYEDRPFEGLFQI 80
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
+ + R E +L G + I D+
Sbjct: 81 NCEISSMAWAHFDNSKNSNEEILIARIIEKAIRRSNSLDLEALCIIAGEKVWNITVDLNF 140
Query: 121 ADGGTRTAAI--TGAWVALHDCLQHMEDCSNKFQLSQVLKGH--------VAAISCGMLC 170
+ + GA +ALH + N + V + + +
Sbjct: 141 LNFDGNFVDVGCFGAMLALHHFKKPDISIVNGGEDIIVHDIDERQPVPLSILHVPICLTY 200
Query: 171 GYPIVDLDYGEDSTIDVD------------------ANFVMTDSGHIVEVQGSAERATFS 212
+ D D + + ++++ + S
Sbjct: 201 SFYNPGNKESNLKGEDDDEIYLLDANLIEEQVREGSIVVTLNKNRELIQLSKNG-GIPIS 259
Query: 213 QDHFFAMLNLAKDRIADLIKLQKDVISNE 241
+ + + + +L +L K VIS
Sbjct: 260 ANVLLDLSFKSMKIVDELTELIKKVISKH 288
>gi|121716694|ref|XP_001275883.1| 3' exoribonuclease family protein [Aspergillus clavatus NRRL 1]
gi|119404040|gb|EAW14457.1| 3' exoribonuclease family protein [Aspergillus clavatus NRRL 1]
Length = 319
Score = 50.6 bits (119), Expect = 2e-04, Method: Composition-based stats.
Identities = 34/280 (12%), Positives = 73/280 (26%), Gaps = 57/280 (20%)
Query: 6 RQENQMREISLTRRVSKYAEGSCLVKFGD------------------THLL---TTATLE 44
R+ N++R+I + + A GS ++F + + L T
Sbjct: 37 RKPNELRKIFIKTGLIPSASGSAYLEF-EPSASLAAARSSPQSLIPPSSALKLACTVHGP 95
Query: 45 EKVPMWIRNTKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDL 104
+ +P + + +T P + R S +++ + ALR +
Sbjct: 96 KPLPRSATFSPNLVLTTHVKYAPFAARRRKGHIRDS-----SERDLGVHLETALRGAIIA 150
Query: 105 SALGSRQIIIDCDVIQA------------------DGGTRTAAITGAWVALHDCLQHMED 146
+ I +++A IT A A+ D D
Sbjct: 151 ERWPKSGLDITITILEAEDDRWWGDAPDSHDAPWGMMNVLAGCITAASAAIADARIDCLD 210
Query: 147 CSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSA 206
+ V +A + S + M I E+
Sbjct: 211 LVAGGVAALV--SDESAEGARSTPQLMLDTDPAEHRSILSACVVAYMPSRDEITELWLKG 268
Query: 207 ERATF----------SQDHFFAMLNLAKDRIADLIKLQKD 236
+ + ++ A+ L + ++
Sbjct: 269 DSSKVQLGSDDRRTGHDALIDGAVDAARGAHTVLAEAVRE 308
>gi|326474396|gb|EGD98405.1| 3' exoribonuclease [Trichophyton tonsurans CBS 112818]
Length = 415
Score = 50.6 bits (119), Expect = 2e-04, Method: Composition-based stats.
Identities = 12/40 (30%), Positives = 19/40 (47%)
Query: 5 GRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE 44
GR + Q R S++ + GS +V+ GDT + E
Sbjct: 56 GRTDTQFRPASVSTGSLTHTNGSAVVRMGDTAAVCGVRAE 95
>gi|121704102|ref|XP_001270315.1| 3' exoribonuclease family protein [Aspergillus clavatus NRRL 1]
gi|119398459|gb|EAW08889.1| 3' exoribonuclease family protein [Aspergillus clavatus NRRL 1]
Length = 416
Score = 50.6 bits (119), Expect = 2e-04, Method: Composition-based stats.
Identities = 13/44 (29%), Positives = 20/44 (45%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE 44
+R +GR +Q R S + GS +V+ GDT + E
Sbjct: 48 VRANGRATSQFRITSANTGSLTHTNGSAVVRIGDTAAVCGVRAE 91
>gi|207346511|gb|EDZ72988.1| YDR280Wp-like protein [Saccharomyces cerevisiae AWRI1631]
Length = 212
Score = 50.6 bits (119), Expect = 2e-04, Method: Composition-based stats.
Identities = 27/192 (14%), Positives = 60/192 (31%), Gaps = 5/192 (2%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
RL GR +Q R++ +T G VK G+T + + + P + G
Sbjct: 24 RLDGRSFDQFRDVEITFG---KEFGDVSVKMGNTKVHCRISCQIAQP-YEDRPFEGLFVI 79
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
+ P + + S+ I++ + R+ V+ + +
Sbjct: 80 STEISPMAGSQFENGNITGEDEVLCSRIIEKSVRRSGALDVEGLCIVAGSKCWAVRADVH 139
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISC-GMLCGYPIVDLDYG 180
I + +A+ L H + Q++ V + + + + +
Sbjct: 140 FLDCDGGFIDASCIAVMAGLMHFKKPDITVHGEQIIVHPVNEREPVPLGILHIPICVTFS 199
Query: 181 EDSTIDVDANFV 192
+ D + N
Sbjct: 200 FFNPQDTEENIK 211
>gi|195330095|ref|XP_002031744.1| GM23883 [Drosophila sechellia]
gi|194120687|gb|EDW42730.1| GM23883 [Drosophila sechellia]
Length = 223
Score = 50.6 bits (119), Expect = 2e-04, Method: Composition-based stats.
Identities = 29/234 (12%), Positives = 69/234 (29%), Gaps = 31/234 (13%)
Query: 9 NQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPR 68
+ +R++ +GS + G T L+ +V + ++ Y
Sbjct: 6 DTLRQMHCEFNPLSRCDGSVMYSQGATGLIGAVLGPIEVKTQNLSIDGSYLECNYRPKAG 65
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
+ + I L + A ++ + ++ G
Sbjct: 66 L-------------PQVIDRIREAAIRDVLELALLSEAHPRSKMSVQIQELEDRGSIDAC 112
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG-YPIVDLDYGEDSTIDV 187
A+ A +A+ LK AA+ + ++D D E
Sbjct: 113 AVNCACLAM-------------LIGGLPLKYSFAAVHAIINEQGEYVLDPDQSETQHQRA 159
Query: 188 DANFVMTD-SGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
F G+++ V+ + +F F + L + A++ + + ++
Sbjct: 160 SFTFAFDSVEGNLLLVR---TKGSFKIAQFNDIECLCRAASAEIFQFYRSQVAK 210
>gi|50552404|ref|XP_503612.1| YALI0E06039p [Yarrowia lipolytica]
gi|49649481|emb|CAG79193.1| YALI0E06039p [Yarrowia lipolytica]
Length = 262
Score = 50.6 bits (119), Expect = 2e-04, Method: Composition-based stats.
Identities = 23/233 (9%), Positives = 63/233 (27%), Gaps = 3/233 (1%)
Query: 10 QMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRS 69
+ I + V + A GS ++ D ++ + + + ++ +
Sbjct: 32 DIGSIFVKTGVVENANGSAYLELDDIKIVAIVHGPRPMRGLFTTSAILNVDTKFLPVSLC 91
Query: 70 TGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAA 129
S + + +L+ V S I + + +
Sbjct: 92 DIESKSAVVSSTQLTQYIRSASTTQSSSLQKNVSSYVHTSLLPSILVEKYPKSTIDVSIS 151
Query: 130 ITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDA 189
+ + + C+ L+ + +L + T ++D
Sbjct: 152 VLSSSNNTKTTVAAAVSCAGAALADSGLECTDIVTAGSVLLDENKATVSPSRAPTSEIDG 211
Query: 190 NF-VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
M S IV E S+ + + ++ ++ + V+ +
Sbjct: 212 VVSYMAASKKIVG--MWIEGGNVSEKQMEEIFDKTEEMAREIRGVMHGVLLEQ 262
>gi|294948902|ref|XP_002785952.1| Exosome complex exonuclease RRP45, putative [Perkinsus marinus ATCC
50983]
gi|239900060|gb|EER17748.1| Exosome complex exonuclease RRP45, putative [Perkinsus marinus ATCC
50983]
Length = 350
Score = 50.6 bits (119), Expect = 2e-04, Method: Composition-based stats.
Identities = 37/267 (13%), Positives = 67/267 (25%), Gaps = 30/267 (11%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT------ 54
+R GR R + L A G C + G T + T E P R
Sbjct: 29 LRADGRTLLDCRRMKLRLGP---ALGQCECRIGSTWVRAVVTGEVITPPPERPNEGKLFV 85
Query: 55 --KHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGS--- 109
+G + + + + +Q + + G V L G
Sbjct: 86 SVDYGAVVSSATLPSGDSAGLPGTAQTPEAVSLCNQLERMLKGSKAVDVEALCIAGGSRV 145
Query: 110 RQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQ---------------LS 154
+ +D V G AA T + AL + +
Sbjct: 146 WSVRLDVHVFTDAGNVGDAAATASVAALMHYRRSEVTTMEGSTVVREELEPMPLSIHHMP 205
Query: 155 QVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQD 214
L + G E + V+ G + + +
Sbjct: 206 LPLTFTLVKSPDGTTSAVLADPTSLEERLSGGALLVVVVNQYGELCSLLKPG-GTSCPLP 264
Query: 215 HFFAMLNLAKDRIADLIKLQKDVISNE 241
++ A R ++ K+ D + +
Sbjct: 265 TVINCIHAAAGRAKEVHKMIADALEKD 291
>gi|323355606|gb|EGA87426.1| Rrp45p [Saccharomyces cerevisiae VL3]
Length = 212
Score = 50.2 bits (118), Expect = 2e-04, Method: Composition-based stats.
Identities = 25/161 (15%), Positives = 51/161 (31%), Gaps = 4/161 (2%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
RL GR +Q R++ +T G VK G+T + + + P + G
Sbjct: 24 RLDGRSFDQFRDVEITFG---KEFGDVSVKMGNTKVHCRISCQIAQP-YEDRPFEGLFVI 79
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
+ P + + S+ I++ + R+ V+ + +
Sbjct: 80 STEISPMAGSQFENGNITGEDEVLCSRIIEKSVRRSGALDVEGLCIVAGSKCWAVRADVH 139
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVA 162
I + +A+ L H + Q++ V
Sbjct: 140 FLDCDGGFIDASCIAVMAGLMHFKKPDITVHGEQIIVHPVN 180
>gi|170592347|ref|XP_001900930.1| 3' exoribonuclease family, domain 2 containing protein [Brugia
malayi]
gi|158591625|gb|EDP30230.1| 3' exoribonuclease family, domain 2 containing protein [Brugia
malayi]
Length = 110
Score = 50.2 bits (118), Expect = 2e-04, Method: Composition-based stats.
Identities = 14/55 (25%), Positives = 24/55 (43%), Gaps = 3/55 (5%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK 55
+R+ GR+ ++ RE+ + GSCLV G+T + + P R
Sbjct: 44 VRVDGRKCDEFREVKVIVG---SELGSCLVMLGETKVSAQVSCSLVEPSTTRGNM 95
>gi|322709290|gb|EFZ00866.1| 3' exoribonuclease [Metarhizium anisopliae ARSEF 23]
Length = 288
Score = 50.2 bits (118), Expect = 2e-04, Method: Composition-based stats.
Identities = 42/264 (15%), Positives = 73/264 (27%), Gaps = 40/264 (15%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFG--DTHLLTTATLEEKVPMWIRNTKHGW 58
+RL R+ Q R + LT +FG D ++ + E VP R G
Sbjct: 23 LRLDNRKFEQFRPLELTFGD----------EFGVADAKIVARVSAEVTVPFTDRPFD-GI 71
Query: 59 ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSV--------VDLSALGSR 110
T + P + + R + + R++ + +R ++
Sbjct: 72 FTISSELSPMAAPSF-----EVNRPTEQEVLLSRILEKTIRRSGALDTESLCLVAGQKCW 126
Query: 111 QIIIDCDVIQADGGTRTAAITGAWVALHDCLQH-------------MEDCSNKFQLSQVL 157
+ D V+ DG A AL + +
Sbjct: 127 SVRADVHVLSHDGNLLDVACFAVVAALRHFRKPETTMDGETLTVYTPAEREPVALSWLHS 186
Query: 158 KGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFF 217
V G ++D + E+ F + G I +V A F
Sbjct: 187 PFCVTFSFFGHDGETVLMDTTWLEEQLRVTSCTFSLNKHGEICQVSKLG-GADVDAPLFV 245
Query: 218 AMLNLAKDRIADLIKLQKDVISNE 241
LA DR+ L + +
Sbjct: 246 RCAQLALDRVKVFTDLVDRKLMED 269
>gi|221221406|gb|ACM09364.1| Exosome complex exonuclease RRP45 [Salmo salar]
Length = 231
Score = 50.2 bits (118), Expect = 2e-04, Method: Composition-based stats.
Identities = 33/149 (22%), Positives = 48/149 (32%), Gaps = 11/149 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
RL GRQ R I ++ G C V G T ++ + E P R G +
Sbjct: 23 RLDGRQTYDYRSIKISFGTD---YGCCFVDLGKTRIMAQVSCELITPKENRP-NEGIMFF 78
Query: 62 EYGMLPRSTGNRVKREAVS-----GRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
+ P ++ RQ R + I VV + QI +D
Sbjct: 79 NIELSPMASPAFEMGRQSELLVKLNRQLERCLRNSKCIDTESLCVVSGEKV--WQIRVDV 136
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHME 145
++ DG AA A AL +
Sbjct: 137 RLLNHDGNLMDAASIAAIAALCHFRRPDV 165
>gi|167377661|ref|XP_001734490.1| hypothetical protein [Entamoeba dispar SAW760]
gi|165904013|gb|EDR29386.1| hypothetical protein, conserved [Entamoeba dispar SAW760]
Length = 150
Score = 50.2 bits (118), Expect = 2e-04, Method: Composition-based stats.
Identities = 26/143 (18%), Positives = 58/143 (40%), Gaps = 13/143 (9%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R GR+ N++R ++ V A+GSCL++ ++ ++++ +
Sbjct: 7 RGDGREANEIRATTIKVGVISGAKGSCLIQKENSKVISSV-------------QIKTQDE 53
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
+ E S + E+Q ++ ++L S ++ + + I + V++
Sbjct: 54 SIDFEFTVKVTFAQFENNSLFNNRKEIELQEILTQSLTSRINQESNKGKIICLQVFVMEQ 113
Query: 122 DGGTRTAAITGAWVALHDCLQHM 144
DG + I + +AL D M
Sbjct: 114 DGSVEDSIINSSSLALFDAEIQM 136
>gi|31335241|gb|AAP44472.1| PNPase [Homo sapiens]
Length = 275
Score = 50.2 bits (118), Expect = 2e-04, Method: Composition-based stats.
Identities = 11/62 (17%), Positives = 21/62 (33%), Gaps = 1/62 (1%)
Query: 179 YGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
ED D+D T+ G I +Q + + A +++++ I
Sbjct: 27 GIEDYNGDMDFKIAGTNKG-ITALQADIKLPGIPIKIVMEAIQQASVAKKEILQIMNKTI 85
Query: 239 SN 240
S
Sbjct: 86 SK 87
>gi|301097178|ref|XP_002897684.1| exosome complex exonuclease RRP45-like protein [Phytophthora
infestans T30-4]
gi|262106705|gb|EEY64757.1| exosome complex exonuclease RRP45-like protein [Phytophthora
infestans T30-4]
Length = 513
Score = 50.2 bits (118), Expect = 2e-04, Method: Composition-based stats.
Identities = 32/238 (13%), Positives = 65/238 (27%), Gaps = 26/238 (10%)
Query: 1 MRLSGRQENQMREISLTRRVSKY--AEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW 58
+R GR Q R+I + + +E V+ G T ++ E VP + G+
Sbjct: 28 LRADGRDLLQQRKIRVQF---RRSESESQAEVQLGRTRVIGNVHGEI-VPPFPDRPTEGF 83
Query: 59 ITAEYGMLPRSTGNRVKREAVSGRQGGRSQ--------EIQRMIGRALRSVVDLSALGSR 110
+ + P ++ + + S E RAL + G +
Sbjct: 84 LHFAVELSPMASPSFEASASASRGAASSVAAAELARLVERGLRESRALDTEALAVVAGEK 143
Query: 111 QIIIDCDVIQADGGTRTAAITGAWVA--------LHDCLQHMEDCSNKFQLSQVLKGHVA 162
I C V D G ++ + + V +
Sbjct: 144 VWAITCHVHVVDHGGNIVDAASLAAIASLMHYRRPEVAVKEGTTGNGGVTVYSVDEHSAV 203
Query: 163 AISCGMLC---GYPIVDLDYGEDSTIDVDANFVMTDSGH-IVEVQGSAERATFSQDHF 216
+S + + + + D D + G I+ + + +
Sbjct: 204 PLSLHHIPISISFCFLQAAGRMQCSSDNDDGVDTDEDGEPIIFMDPTDREERITDARM 261
>gi|224013774|ref|XP_002296551.1| predicted protein [Thalassiosira pseudonana CCMP1335]
gi|220968903|gb|EED87247.1| predicted protein [Thalassiosira pseudonana CCMP1335]
Length = 374
Score = 50.2 bits (118), Expect = 3e-04, Method: Composition-based stats.
Identities = 18/91 (19%), Positives = 28/91 (30%), Gaps = 11/91 (12%)
Query: 1 MRLSGRQENQMREISLTRRVS-KYAEGSCLVKFGD---------THLLTTATLEEKVPMW 50
+R GR + R +++ + + GS +V G T ++ TL P
Sbjct: 50 VRPDGRPFHTSRPVTVLTSFLNRNSSGSAMVTLGGDDGSDNSSSTRVIAACTLLVGHP-G 108
Query: 51 IRNTKHGWITAEYGMLPRSTGNRVKREAVSG 81
HG I P S S
Sbjct: 109 PSTPTHGDIDVLVTASPLSGPRFDCMGRESM 139
>gi|13543675|gb|AAH05986.1| PNPT1 protein [Homo sapiens]
Length = 263
Score = 50.2 bits (118), Expect = 3e-04, Method: Composition-based stats.
Identities = 11/62 (17%), Positives = 21/62 (33%), Gaps = 1/62 (1%)
Query: 179 YGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
ED D+D T+ G I +Q + + A +++++ I
Sbjct: 15 GIEDYNGDMDFKIAGTNKG-ITALQADIKLPGIPIKIVMEAIQQASVAKKEILQIMNKTI 73
Query: 239 SN 240
S
Sbjct: 74 SK 75
>gi|34785309|gb|AAH00862.2| PNPT1 protein [Homo sapiens]
Length = 266
Score = 50.2 bits (118), Expect = 3e-04, Method: Composition-based stats.
Identities = 11/62 (17%), Positives = 21/62 (33%), Gaps = 1/62 (1%)
Query: 179 YGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
ED D+D T+ G I +Q + + A +++++ I
Sbjct: 18 GIEDYNGDMDFKIAGTNKG-ITALQADIKLPGIPIKIVMEAIQQASVAKKEILQIMNKTI 76
Query: 239 SN 240
S
Sbjct: 77 SK 78
>gi|222623035|gb|EEE57167.1| hypothetical protein OsJ_07096 [Oryza sativa Japonica Group]
Length = 417
Score = 50.2 bits (118), Expect = 3e-04, Method: Composition-based stats.
Identities = 38/284 (13%), Positives = 81/284 (28%), Gaps = 53/284 (18%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVK--------FGDTHLLTTATLEEKVPMWIR 52
+R+ GR+ R + + S LV+ DT ++ AT + V +
Sbjct: 25 LRVDGRRPFDFRRLKILFGSSWSV--CVLVQGGRLGGGAARDTRVMGYATAQL-VQPYKD 81
Query: 53 NTKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSA------ 106
G + P + GR G + E+ R++ R LR +
Sbjct: 82 RPNQGTLAIFTEFSPIADPAFEP-----GRPGESAIELGRVVDRGLRESRAVDMESLCVV 136
Query: 107 --LGSRQIIIDCDVIQADGGTRTAAIT--------------------------GAWVALH 138
+ +D ++ G
Sbjct: 137 AGKHVWSVRVDLHILDNGGELNVPDAMVLSLRNLIDAANIAALAALSTFRRPECTVGGED 196
Query: 139 DCLQHMEDCSNKFQLSQVLKGHVAAISCGML--CGYPIVDLDYGEDSTIDVDANFVMTDS 196
+ D + L + A++ ++D Y E++ + + +
Sbjct: 197 GQQVTVHDPEVRDPLPLTIHHLPIAVTFAYFGEGNIMVIDPTYKEEAVMGGRMTATINSN 256
Query: 197 GHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
G + +Q + S L +A + AD+ K+ +++
Sbjct: 257 GDVCSIQKAGGEGVMS-SVIMQCLRIASVKAADITSKIKNEVNS 299
>gi|322699612|gb|EFY91372.1| 3' exoribonuclease [Metarhizium acridum CQMa 102]
Length = 288
Score = 49.8 bits (117), Expect = 3e-04, Method: Composition-based stats.
Identities = 40/264 (15%), Positives = 72/264 (27%), Gaps = 40/264 (15%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFG--DTHLLTTATLEEKVPMWIRNTKHGW 58
+RL R+ Q R + LT +FG D ++ + E VP R G
Sbjct: 23 LRLDNRKFEQFRPLELTFGD----------EFGVADVKIVAKVSAEVTVPFTDRPFD-GI 71
Query: 59 ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSV--------VDLSALGSR 110
+ + P + R + + R++ + +R ++
Sbjct: 72 FSISSELSPMVAPSF-----EVNRPTEQEVLLSRILEKTIRRSGALDTESLCLVAGQKCW 126
Query: 111 QIIIDCDVIQADGGTRTAAITGAWVALHDCLQH-------------MEDCSNKFQLSQVL 157
+ D V+ DG A AL + +
Sbjct: 127 SVRADVHVLSHDGNLLDVACFAVVAALRHFRKPETTMEGETLTIYTPAEREPVALSWLHS 186
Query: 158 KGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFF 217
V G ++D + E+ F + G I +V A F
Sbjct: 187 PFCVTFSFFGHEGETVLMDTTWLEEQLRVSSCTFSLNKHGEICQVSKLG-GADVDAPLFV 245
Query: 218 AMLNLAKDRIADLIKLQKDVISNE 241
LA +R+ L + +
Sbjct: 246 RCAQLALERVKVFTDLVDRKLMED 269
>gi|207108928|ref|ZP_03243090.1| polynucleotide phosphorylase/polyadenylase [Helicobacter pylori
HPKX_438_CA4C1]
Length = 190
Score = 49.8 bits (117), Expect = 3e-04, Method: Composition-based stats.
Identities = 29/188 (15%), Positives = 56/188 (29%), Gaps = 23/188 (12%)
Query: 20 VSKYAEGSCLVKFGDTHLLTTATLEEKV---PMWIRNTKHGWITAEYGMLPRSTGNRVKR 76
V+K A S L + G T +L + +E + + + G +P R
Sbjct: 20 VAKQATSSLLYRLGKTIILASVCVEREPVSEDFLPLVVQFLEKSYAAGKIPGGFVKR--- 76
Query: 77 EAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVA 136
GR R+I R LR + QI + + + +A+ A A
Sbjct: 77 ---EGRAQDFEILTSRLIDRTLRPLFPKDYRYPTQITLMVLSHDIENDLQVSALNAASAA 133
Query: 137 LHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDS 196
L V+A + +++ + + +D T
Sbjct: 134 LFLAHIAPIKS-------------VSACRIARVDNEFLINPNTSLLNQSSLDLFVSGTKE 180
Query: 197 GHIVEVQG 204
+ ++
Sbjct: 181 -SLNMIEM 187
>gi|308157951|gb|EFO60878.1| 3' exoribonuclease, putative [Giardia lamblia P15]
Length = 262
Score = 49.8 bits (117), Expect = 3e-04, Method: Composition-based stats.
Identities = 11/44 (25%), Positives = 22/44 (50%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE 44
+R GR++ + RE ++ + GS + G T L+ + L+
Sbjct: 5 LRPDGREKLEHREPTILFNCISTSTGSVRFRLGGTDLIASVYLD 48
>gi|126654493|ref|XP_001388417.1| exoribonuclease PH [Cryptosporidium parvum Iowa II]
gi|126117122|gb|EAZ51222.1| exoribonuclease PH, putative [Cryptosporidium parvum Iowa II]
Length = 295
Score = 49.8 bits (117), Expect = 3e-04, Method: Composition-based stats.
Identities = 35/261 (13%), Positives = 71/261 (27%), Gaps = 23/261 (8%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----------------E 44
+R GR R I + V A GS ++ + ++ +
Sbjct: 36 IRNDGRDLTDFRPIVIALDVISTANGSSRIRNDELDIIVAVKVSFLNNLFFFIIALILFS 95
Query: 45 EKVPMWIRNTKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDL 104
+ I N + +Y T + + ++ L
Sbjct: 96 SNIMDKISNVAPSFTEEDYSF--YITNIVKDMCFKNFDLSKLTILENKLYWNIYIDATIL 153
Query: 105 SALGSRQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLS----QVLKGH 160
S G+ + + A TR I + + + +
Sbjct: 154 SFGGNMVDWVTIAIHTALRTTRIPKIHVSPSISTKENNKDVSYTVSPSVCSGTPFPFQDI 213
Query: 161 VAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAML 220
IS G + G I D++ E + G V + T + ++
Sbjct: 214 PFIISAGCIRGKVIWDMNMQEQICSKTIIALSINSKGECVAMNKV-YSNTLDLNLIPTII 272
Query: 221 NLAKDRIADLIKLQKDVISNE 241
N A + +++ K + SN+
Sbjct: 273 NKAAEISSEISKSLDEFFSNK 293
>gi|169608692|ref|XP_001797765.1| hypothetical protein SNOG_07432 [Phaeosphaeria nodorum SN15]
gi|111063778|gb|EAT84898.1| hypothetical protein SNOG_07432 [Phaeosphaeria nodorum SN15]
Length = 368
Score = 49.8 bits (117), Expect = 3e-04, Method: Composition-based stats.
Identities = 10/44 (22%), Positives = 20/44 (45%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE 44
+R + R + R + +A GS +V+ G+T ++ E
Sbjct: 74 LRANARSAHAFRRPGINTGSLTHANGSAVVRLGNTSVVCGVRAE 117
>gi|256079241|ref|XP_002575897.1| Exosome complex exonuclease RRP43 [Schistosoma mansoni]
gi|238661151|emb|CAZ32132.1| Exosome complex exonuclease RRP43, putative [Schistosoma mansoni]
Length = 311
Score = 49.8 bits (117), Expect = 3e-04, Method: Composition-based stats.
Identities = 18/84 (21%), Positives = 31/84 (36%), Gaps = 5/84 (5%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+R+ R + +I++ V GS LVK G T ++ KV + + G +T
Sbjct: 21 IRIEDRDCLEFADINVAAGVLTSCHGSALVKVGKTQVIAGV----KVKVIPESGNSGSVT 76
Query: 61 AEYGMLPRST-GNRVKREAVSGRQ 83
G+R+ Q
Sbjct: 77 CNVEFAGLCHRGSRLNTPQPKCAQ 100
>gi|213410246|ref|XP_002175893.1| exosome subunit Rrp42 [Schizosaccharomyces japonicus yFS275]
gi|212003940|gb|EEB09600.1| exosome subunit Rrp42 [Schizosaccharomyces japonicus yFS275]
Length = 300
Score = 49.8 bits (117), Expect = 3e-04, Method: Composition-based stats.
Identities = 34/229 (14%), Positives = 61/229 (26%), Gaps = 21/229 (9%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+R GR NQ+R S V A GS VK G + + G
Sbjct: 22 IRNDGRAANQLRAFSGQVDVLPGANGSARVKCG----------SVVEVVVGVKAEIGEAD 71
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSA--------LGSRQI 112
++ G ++ A R+ +AL +D
Sbjct: 72 SKRGGAFLASVEVPTFIAQQNRENDPVPAFLTRSMQALLDQLDTKYLQFTPSRAWTVYVD 131
Query: 113 IIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY 172
+ AD TA +AL + + + + +
Sbjct: 132 AVVVTCAVADEQLLTALSLATRLALLCTRIPRISTPDVSEDIIGSSKYEPSEEFDADPDW 191
Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLN 221
G D+ + + +V + + E A+ SQ + +
Sbjct: 192 DHALPLQGLDA---MSVIVAASVVDQVVLIDPTPEEASVSQATYAVAVQ 237
>gi|51491297|emb|CAH18709.1| hypothetical protein [Homo sapiens]
Length = 246
Score = 49.8 bits (117), Expect = 3e-04, Method: Composition-based stats.
Identities = 10/59 (16%), Positives = 20/59 (33%), Gaps = 1/59 (1%)
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
D D+D T+ G I +Q + + A +++++ IS
Sbjct: 1 DYNGDMDFKIAGTNKG-ITALQADIKLPGIPIKIVMEAIQQASVAKKEILQIMNKTISK 58
>gi|326482450|gb|EGE06460.1| 3' exoribonuclease [Trichophyton equinum CBS 127.97]
Length = 415
Score = 49.8 bits (117), Expect = 3e-04, Method: Composition-based stats.
Identities = 12/40 (30%), Positives = 19/40 (47%)
Query: 5 GRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE 44
GR + Q R S++ + GS +V+ GDT + E
Sbjct: 56 GRTDTQFRPASVSTGSLTHTNGSAVVRIGDTAAVCGVRAE 95
>gi|156049529|ref|XP_001590731.1| hypothetical protein SS1G_08471 [Sclerotinia sclerotiorum 1980]
gi|154692870|gb|EDN92608.1| hypothetical protein SS1G_08471 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 317
Score = 49.8 bits (117), Expect = 3e-04, Method: Composition-based stats.
Identities = 36/281 (12%), Positives = 66/281 (23%), Gaps = 48/281 (17%)
Query: 2 RLS-GRQENQMREISLTRRVSKYAEGSCLVKF-------------------GDTHLLTTA 41
R S RQ N +R+I L V+ A GS ++ G L T
Sbjct: 33 RPSRNRQPNVLRKIFLKTGVTPSASGSAYLELEPSQPSNQSAPGLASLSTSGL-KLTCTV 91
Query: 42 TLEEKVPMWIRNTKHGWITAEYGMLPRSTGNRVKR-EAVSGRQGGRSQEIQRMI------ 94
+ + H + P ++ R S R G E
Sbjct: 92 HGPRPLSKSAAFSPHMILQTHVKYAPFASRRRRGYIRDTSERDLGVHLETALRGVIIGDR 151
Query: 95 --GRALRSVVDLSALGSRQIIIDCDVIQA-------DGGTRTAAITGAWVALHDCLQHME 145
+ + + D + + IT A A+ D
Sbjct: 152 WPKSGVEINITILEGEEDHWWGDDKSFGSSTAGGWGMMSVLSGCITVASAAIADAGIDCV 211
Query: 146 DCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGS 205
D + + V A + + + + I ++
Sbjct: 212 DVVSGGVAALVRS--PANSEQEDSTSLVLDPVPSEHKEILAACIVAYLPARDEITDLWVK 269
Query: 206 AERATFSQ--------DHFFA-MLNLAKDRIADLIKLQKDV 237
+ ++ + + A LI K+
Sbjct: 270 GDIGHSTESNNDDPSYEELTENAVQAALGAHRVLIGALKET 310
>gi|195571989|ref|XP_002103983.1| GD18693 [Drosophila simulans]
gi|194199910|gb|EDX13486.1| GD18693 [Drosophila simulans]
Length = 223
Score = 49.8 bits (117), Expect = 3e-04, Method: Composition-based stats.
Identities = 27/233 (11%), Positives = 66/233 (28%), Gaps = 29/233 (12%)
Query: 9 NQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPR 68
+R+++ +GS + G T L+ +V + ++ Y
Sbjct: 6 ETLRQMNCEFNPLSRCDGSVMYSQGATGLIGAVLGPIEVKTQNLSIDGSYLECNYRPKAG 65
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
+ + I L + A ++ + ++ G
Sbjct: 66 L-------------PQVIDRIREAAIRDVLELALLSEAHPRSKMSVQIQELEDRGSIDAC 112
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG-YPIVDLDYGEDSTIDV 187
A+ A +A+ LK AA+ + ++D D E
Sbjct: 113 AVNCACLAM-------------LIGGLPLKYSFAAVHAIINEQGEYVLDPDQSETQHQRA 159
Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
F + + + + +F F + L + A++ + + ++
Sbjct: 160 SFTFAFDSVEGNLLLVKT--KGSFKIAQFNDIECLCRAASAEIFQFYRSQVAK 210
>gi|294952965|ref|XP_002787536.1| Exosome complex exonuclease RRP45, putative [Perkinsus marinus ATCC
50983]
gi|239902542|gb|EER19332.1| Exosome complex exonuclease RRP45, putative [Perkinsus marinus ATCC
50983]
Length = 350
Score = 49.8 bits (117), Expect = 3e-04, Method: Composition-based stats.
Identities = 37/267 (13%), Positives = 67/267 (25%), Gaps = 30/267 (11%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT------ 54
+R GR R + L A G C + G T + T E P R
Sbjct: 29 LRADGRTLLDCRRMKLRLGP---ALGQCECRVGSTWVRAVVTGEVITPPPERPNEGKLFV 85
Query: 55 --KHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGS--- 109
+G + + + + +Q + + G V L G
Sbjct: 86 SVDYGAVVSSATLPSGDSAGLPGTAQTPEAVSLCNQLERMLKGSKAVDVEALCIAGGSRV 145
Query: 110 RQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQ---------------LS 154
+ +D V G AA T + AL + +
Sbjct: 146 WSVRLDVHVFTDAGNVGDAAATASVAALMHYRRSEVTTMEGSTVVREELEPMPLSIHHMP 205
Query: 155 QVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQD 214
L + G E + V+ G + + +
Sbjct: 206 LPLTFTLVKSPDGTTSAVLADPTSLEERLSGGALLVVVVNQYGELCSLLKPG-GTSCPLP 264
Query: 215 HFFAMLNLAKDRIADLIKLQKDVISNE 241
++ A R ++ K+ D + +
Sbjct: 265 TVINCIHAAAGRAKEVHKMIADALEKD 291
>gi|195428613|ref|XP_002062366.1| GK17502 [Drosophila willistoni]
gi|194158451|gb|EDW73352.1| GK17502 [Drosophila willistoni]
Length = 326
Score = 49.5 bits (116), Expect = 4e-04, Method: Composition-based stats.
Identities = 34/247 (13%), Positives = 73/247 (29%), Gaps = 18/247 (7%)
Query: 7 QENQM----REISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPM-WIRNTKHGWITA 61
+ +++ R L V GS +++G+T ++ +V R G +
Sbjct: 37 KPDEVVAKPRTTFLRAGVLTTVRGSAYMEYGNTKVMAIVAPPHEVVRASARRMNMGSLNC 96
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
+TG + M+ +AL VV + + Q+ + +I+
Sbjct: 97 YVNYAAFATGELETVPRREKQLS-------SMLTKALEPVVCRNEFLNFQLDVRVLIIED 149
Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKG------HVAAISCGMLCGYPIV 175
DG + AI VAL +C D + +
Sbjct: 150 DGCLLSTAINCCGVALVECGISTYDLITASTACIYRDHVFINPNAMVEELLWKHRAGHAL 209
Query: 176 DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
+ I ++ ++ + S + +L+ + +L +
Sbjct: 210 PSSSDDTKPIQEHGLLIIASMDTFDQLAQCQQCGYLSPATYTRLLDYTLTINKGMRQLIR 269
Query: 236 DVISNEV 242
V+ V
Sbjct: 270 QVLLQRV 276
>gi|331212367|ref|XP_003307453.1| exosome complex exonuclease RRP41 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|309297856|gb|EFP74447.1| exosome complex exonuclease RRP41 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 308
Score = 49.5 bits (116), Expect = 4e-04, Method: Composition-based stats.
Identities = 38/262 (14%), Positives = 74/262 (28%), Gaps = 38/262 (14%)
Query: 1 MRLSGRQENQMREISLTRRVSKYA----EGSCLVKFGDTHLLTTATLEEKVPMWIRN--- 53
+RL R+ ++R S+ + + V+ G T L+ + R
Sbjct: 28 LRLDNRRPYELR--SIDFNILPNPPVGCDSVARVEHGLTKLIGFVSGPRDSVESNRTVAT 85
Query: 54 ---------------TKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRAL 98
+ + +T GR + ++ + I
Sbjct: 86 TLGNPTSNSASSNLNNNNNNQNGSISVHISTTPFSSIDRKKIGRSDKKFADLAQAIQNTF 145
Query: 99 RSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLK 158
VV L I I V+Q DG AAI +AL + D
Sbjct: 146 EPVVMLHLYPRSTIDIYVQVLQQDGALLQAAINVTTLALIGAGVSISDYVL--------- 196
Query: 159 GHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFA 218
++ P++DL E + + V+ + + +Q + F +
Sbjct: 197 --SVSVGALSTPSCPLLDLTNSEQTDLPNLTIAVLPRTQKLTLLQLDTRINILT---FES 251
Query: 219 MLNLAKDRIADLIKLQKDVISN 240
+L + + L +
Sbjct: 252 LLEIGLEACLVLQLEMDREVRR 273
>gi|322491083|emb|CBZ26348.1| putative exosome-associated protein 4 [Leishmania mexicana
MHOM/GT/2001/U1103]
Length = 221
Score = 49.5 bits (116), Expect = 4e-04, Method: Composition-based stats.
Identities = 12/53 (22%), Positives = 19/53 (35%), Gaps = 1/53 (1%)
Query: 2 RLSGR-QENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRN 53
R GR +R I + V S V+ G T +L +++ R
Sbjct: 3 RADGRESPGAVRAIHVATNVLANCHSSACVEIGKTRVLCGVRPPQQLVQEYRG 55
>gi|154346388|ref|XP_001569131.1| exosome-associated protein 4 [Leishmania braziliensis
MHOM/BR/75/M2904]
gi|134066473|emb|CAM44266.1| putative exosome-associated protein 4 [Leishmania braziliensis
MHOM/BR/75/M2904]
Length = 221
Score = 49.5 bits (116), Expect = 4e-04, Method: Composition-based stats.
Identities = 11/53 (20%), Positives = 19/53 (35%), Gaps = 1/53 (1%)
Query: 2 RLSGR-QENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRN 53
R GR +R I + + S V+ G T +L +++ R
Sbjct: 3 RADGRESPEAVRAIHVATNMLANCHSSACVEIGQTRVLCGVRPPQQLVQEYRG 55
>gi|50308723|ref|XP_454365.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|49643500|emb|CAG99452.1| KLLA0E09219p [Kluyveromyces lactis]
Length = 264
Score = 49.5 bits (116), Expect = 4e-04, Method: Composition-based stats.
Identities = 9/43 (20%), Positives = 18/43 (41%), Gaps = 1/43 (2%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKF-GDTHLLTTAT 42
+R GR +Q R + ++ + GS V G + + +
Sbjct: 21 LRPDGRGPHQFRPLEVSTDFLPNSNGSSRVILSGGSECIVSVK 63
>gi|262281983|ref|ZP_06059752.1| polynucleotide phosphorylase [Streptococcus sp. 2_1_36FAA]
gi|262262437|gb|EEY81134.1| polynucleotide phosphorylase [Streptococcus sp. 2_1_36FAA]
Length = 75
Score = 49.5 bits (116), Expect = 4e-04, Method: Composition-based stats.
Identities = 14/37 (37%), Positives = 26/37 (70%), Gaps = 1/37 (2%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKV 47
RE+ + V+K A GS +V++G++ +LT AT+ +K+
Sbjct: 13 RELVVETGQVAKQANGSAVVRYGESTVLTAATMSKKM 49
>gi|302667970|ref|XP_003025563.1| hypothetical protein TRV_00203 [Trichophyton verrucosum HKI 0517]
gi|291189678|gb|EFE44952.1| hypothetical protein TRV_00203 [Trichophyton verrucosum HKI 0517]
Length = 304
Score = 49.1 bits (115), Expect = 5e-04, Method: Composition-based stats.
Identities = 30/270 (11%), Positives = 63/270 (23%), Gaps = 52/270 (19%)
Query: 14 ISLTRRVSKYAEGSCLVKF-------GDT--------HLLTTATLEEKVPMWIRNTKHGW 58
+ L V A GS + G + L+ + + + + +
Sbjct: 17 LDLKTGVIPSASGSAYFELHPSNSSSGGSLIPPSSSLKLICSVNGPKPLSRSTPFSPNLL 76
Query: 59 ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDV 118
++A P + R +++ + ALR + + I +
Sbjct: 77 LSAHVKFAPFANRRRRAHVRDM-----NERDLGVHLENALRGAIIGDRWPKSGLDITIMI 131
Query: 119 IQ----------------------ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQV 156
++ +T A A+ D D + V
Sbjct: 132 LEGEDDRWWGDMSTAETLTGSDGWGMMNVLAHCVTVASAAIADARIDCLDLVAGGVAAVV 191
Query: 157 LKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQD-- 214
+ + + M I E+ + S D
Sbjct: 192 DTCSSGEGATSSTKTVVLDPDPSEHLNISSSCVVGYMPSLDEITELWLKGDMPGASSDGT 251
Query: 215 --------HFFAMLNLAKDRIADLIKLQKD 236
+ AK + LI+ K+
Sbjct: 252 YDSPNHDALMGGAIAAAKASHSVLIEAVKE 281
>gi|253745727|gb|EET01463.1| 3' exoribonuclease, putative [Giardia intestinalis ATCC 50581]
Length = 265
Score = 49.1 bits (115), Expect = 5e-04, Method: Composition-based stats.
Identities = 11/44 (25%), Positives = 21/44 (47%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE 44
+R GR+ + RE ++ + GS + G T L+ + L+
Sbjct: 5 LRPDGRERLEHREPTVLFNCISTSTGSVRFRLGGTDLIASVYLD 48
>gi|71409477|ref|XP_807083.1| exosome-associated protein 1 [Trypanosoma cruzi strain CL Brener]
gi|70871001|gb|EAN85232.1| exosome-associated protein 1, putative [Trypanosoma cruzi]
Length = 383
Score = 49.1 bits (115), Expect = 5e-04, Method: Composition-based stats.
Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 8/50 (16%)
Query: 1 MRLSGRQENQMREISLTRRVSKYA-------EGSCL-VKFGDTHLLTTAT 42
+R GR Q R ++ S A +GSC+ V+ G T +L AT
Sbjct: 23 VRGDGRTLTQRRPFTIRTNYSAGASIVDVEYDGSCVEVQCGATTVLAAAT 72
>gi|115735795|ref|XP_001191677.1| PREDICTED: similar to conserved hypothetical protein, partial
[Strongylocentrotus purpuratus]
Length = 84
Score = 49.1 bits (115), Expect = 5e-04, Method: Composition-based stats.
Identities = 11/61 (18%), Positives = 23/61 (37%)
Query: 16 LTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGNRVK 75
L A+GSC ++ +T ++ +VP +G + E+ ++ R
Sbjct: 1 LKAGAVSQAKGSCYMEMKNTKVICAVYGPREVPRRDGFVINGQLRCEFKFATFASEVRHG 60
Query: 76 R 76
Sbjct: 61 H 61
>gi|157877516|ref|XP_001687075.1| exosome-associated protein 4 [Leishmania major strain Friedlin]
gi|68130150|emb|CAJ09461.1| putative exosome-associated protein 4 [Leishmania major strain
Friedlin]
Length = 221
Score = 49.1 bits (115), Expect = 6e-04, Method: Composition-based stats.
Identities = 11/41 (26%), Positives = 15/41 (36%), Gaps = 1/41 (2%)
Query: 2 RLSGR-QENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTA 41
R GR +R I + V S V+ G T +L
Sbjct: 3 RADGRESPRAVRAIHVATNVLANCHSSACVEIGKTRVLCGV 43
>gi|76154707|gb|AAX26137.2| SJCHGC06449 protein [Schistosoma japonicum]
Length = 170
Score = 49.1 bits (115), Expect = 6e-04, Method: Composition-based stats.
Identities = 19/70 (27%), Positives = 25/70 (35%), Gaps = 4/70 (5%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+RL R + EI +T V GS LVK G T ++ KV + N G I
Sbjct: 21 IRLEERDCLEFAEIDVTADVLTSCHGSALVKVGRTQVIAGV----KVKVIPENGNSGSII 76
Query: 61 AEYGMLPRST 70
Sbjct: 77 CNVEFAGLCH 86
>gi|225712550|gb|ACO12121.1| Exosome complex exonuclease RRP45 [Lepeophtheirus salmonis]
Length = 210
Score = 49.1 bits (115), Expect = 6e-04, Method: Composition-based stats.
Identities = 13/54 (24%), Positives = 26/54 (48%), Gaps = 3/54 (5%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK 55
RL GR+ ++ R++++ G+ VK G+T +L + + P R +
Sbjct: 20 RLDGRKLDERRDLTIHFG---REWGTTEVKLGETRVLASTSCSVGEPQSSRPNE 70
>gi|71002504|ref|XP_755933.1| 3' exoribonuclease family protein [Aspergillus fumigatus Af293]
gi|66853571|gb|EAL93895.1| 3' exoribonuclease family protein [Aspergillus fumigatus Af293]
gi|159129990|gb|EDP55104.1| 3' exoribonuclease family protein [Aspergillus fumigatus A1163]
Length = 320
Score = 49.1 bits (115), Expect = 6e-04, Method: Composition-based stats.
Identities = 37/280 (13%), Positives = 74/280 (26%), Gaps = 57/280 (20%)
Query: 6 RQENQMREISLTRRVSKYAEGSCLVKFGD------------------THLL---TTATLE 44
RQ N++R+I L + A GS ++F + + L T
Sbjct: 38 RQPNELRKIFLKTGLIPSASGSSYLEF-EPSASLAAARSSPQSLIPPSSALKLACTVHGP 96
Query: 45 EKVPMWIRNTKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDL 104
+ +P + + +T P + R + +++ + ALR V+
Sbjct: 97 KPLPRSATFSPNLVLTTHVKYAPFAARRRKGHIRDT-----SERDLGVHLETALRGVIVA 151
Query: 105 SALGSRQIIIDCDVIQA------------------DGGTRTAAITGAWVALHDCLQHMED 146
+ I +++A IT A A+ D D
Sbjct: 152 ERWPKSGLDITITILEAEDDRWWGDAPDSHDAPWGMMNVLAGCITAASAAIADARIDCLD 211
Query: 147 CSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQ--G 204
+ V + S + M I E+ G
Sbjct: 212 LVAGGVAALVSDESPEGERSA--PKLMLDTDPAEHRSILSACVVAYMPSRDEITEIWLKG 269
Query: 205 SAERATFSQDH--------FFAMLNLAKDRIADLIKLQKD 236
+ + D ++ A+ L + ++
Sbjct: 270 DSSKVLLGPDDKRTGHDALINGAVDAARGAHMVLAEAVRE 309
>gi|146104665|ref|XP_001469886.1| exosome-associated protein 4 [Leishmania infantum]
gi|134074256|emb|CAM73000.1| putative exosome-associated protein 4 [Leishmania infantum JPCM5]
gi|322503863|emb|CBZ38949.1| unnamed protein product [Leishmania donovani BPK282A1]
Length = 221
Score = 49.1 bits (115), Expect = 6e-04, Method: Composition-based stats.
Identities = 11/41 (26%), Positives = 15/41 (36%), Gaps = 1/41 (2%)
Query: 2 RLSGR-QENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTA 41
R GR +R I + V S V+ G T +L
Sbjct: 3 RADGRESPRAVRAIHVATNVLANCHSSACVEIGKTRVLCGV 43
>gi|255950938|ref|XP_002566236.1| Pc22g23450 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211593253|emb|CAP99633.1| Pc22g23450 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 387
Score = 48.7 bits (114), Expect = 6e-04, Method: Composition-based stats.
Identities = 13/44 (29%), Positives = 20/44 (45%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE 44
+R +GR +Q R S + GS +V+ GDT + E
Sbjct: 46 VRANGRATSQFRVTSANAGSLTHTNGSAVVRIGDTAAVCGVRAE 89
>gi|255953039|ref|XP_002567272.1| Pc21g02070 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211588983|emb|CAP95104.1| Pc21g02070 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 315
Score = 48.7 bits (114), Expect = 6e-04, Method: Composition-based stats.
Identities = 32/281 (11%), Positives = 71/281 (25%), Gaps = 51/281 (18%)
Query: 6 RQENQMREISLTRRVSKYAEGSCLVKFGDTHLL--------------------TTATLEE 45
RQ ++R+I L + A GS ++F + L T +
Sbjct: 37 RQPTELRKIFLKAGLIPTASGSSYLEFEPSASLAAARSNPKSLIPPSSALKLACTVHGPK 96
Query: 46 KVPMWIRNTKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLS 105
+P + + +T P + R +++ + ALR +
Sbjct: 97 PLPRSAAFSPNLVLTTHVKYAPFAARKRKGHIR-----DASERDLGVHLETALRGAIIAE 151
Query: 106 ALGSRQIIIDCDVIQADGGTRTAAITGAWVALHD-----CLQHMEDCSNKFQLSQVLKGH 160
+ I +I+A+ + A +
Sbjct: 152 RWPKSGLDITLTIIEAEDDRWWGDAPDSHDASWGMMNVLAGCITAASAAIADAHIDCLDL 211
Query: 161 VAAISCGMLCGYPIVDLDYGEDSTIDVD-----------ANFVMTDSGHIVEVQGSA--- 206
V+ ++ +D+D M I E+
Sbjct: 212 VSGGVAALVSDDSSQSASSAPRLMLDIDPAEHRSILSACVVAYMPARDEITELWLKGDSS 271
Query: 207 -------ERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
+ T + ++ A+ L + ++ I+
Sbjct: 272 RAALDRNDGRTGHEALIDGAVDAARGANTVLAEAVRESIAR 312
>gi|260944648|ref|XP_002616622.1| hypothetical protein CLUG_03863 [Clavispora lusitaniae ATCC 42720]
gi|238850271|gb|EEQ39735.1| hypothetical protein CLUG_03863 [Clavispora lusitaniae ATCC 42720]
Length = 288
Score = 48.7 bits (114), Expect = 6e-04, Method: Composition-based stats.
Identities = 23/259 (8%), Positives = 68/259 (26%), Gaps = 19/259 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGD-THLLTTAT-----LEEKVPMWIRNT 54
+R GR++ Q R + T + GS ++ D + + + L ++ + +
Sbjct: 21 IRPDGRKKFQCRPLEATTAFLPSSNGSARIRMADGSECIVSVKSKVVLLAKESNLIECDI 80
Query: 55 KHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIII 114
+ + + + + + +V + +
Sbjct: 81 DVTGFRDDSNFVSNLKFSLTNLFVKNFPTKNLHLTTKYAFKLFIDCIVVSHSCYPLTLAT 140
Query: 115 DCDVIQADGGTRTAAITGAWVA-----LHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML 169
+ ++ A + + I+ G++
Sbjct: 141 FTSYLALKTTRLPLLVSEVDDADIEEQPTFSDDWDQAQYLAEVFNMEYFSPPLFITLGVV 200
Query: 170 CGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEV--QGSAERA------TFSQDHFFAMLN 221
I++ E+ ++ ++ I V Q A + L
Sbjct: 201 GNNLIMEPSAEEEQVLENGLLIGWHNNKVITPVTNQYLASGSNNTSFKGLQSSVLAKALQ 260
Query: 222 LAKDRIADLIKLQKDVISN 240
+ + ++K D++
Sbjct: 261 MVSEYCPKIVKALDDLVDQ 279
>gi|209876656|ref|XP_002139770.1| 3' exoribonuclease family protein [Cryptosporidium muris RN66]
gi|209555376|gb|EEA05421.1| 3' exoribonuclease family protein, putative [Cryptosporidium muris
RN66]
Length = 272
Score = 48.7 bits (114), Expect = 6e-04, Method: Composition-based stats.
Identities = 25/145 (17%), Positives = 39/145 (26%), Gaps = 7/145 (4%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+R GR R + V A GS ++ + +LTT E P +N G I
Sbjct: 21 IRNDGRDIFDFRIPLVELGVITSANGSARIRNDEVDILTTIKCEVSSPT--KNPTWGDII 78
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
+ +S + + S I ID +I
Sbjct: 79 INIDCPINDKNDEDYTLDLSNTIKDLCFNNFDLSKLCILSNYLC-----WNIFIDIMIIS 133
Query: 121 ADGGTRTAAITGAWVALHDCLQHME 145
G + AL +
Sbjct: 134 NGGNILDWLVFSIHCALRNSRIPQV 158
>gi|308809605|ref|XP_003082112.1| Exosomal 3'-5' exoribonuclease complex, subunit Rrp42 (ISS)
[Ostreococcus tauri]
gi|116060579|emb|CAL55915.1| Exosomal 3'-5' exoribonuclease complex, subunit Rrp42 (ISS)
[Ostreococcus tauri]
Length = 314
Score = 48.7 bits (114), Expect = 7e-04, Method: Composition-based stats.
Identities = 41/279 (14%), Positives = 71/279 (25%), Gaps = 39/279 (13%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPM------------ 49
R GR R + + V A GSC V G+T + +
Sbjct: 17 REDGRGRATRRALRMAIGVVPNANGSCAVTLGETSCVAAVRCDVTAIEAWEASDVGAIVL 76
Query: 50 WIRNTKHGWITAEYGMLPRSTGNR----------VKREAVSGRQGGRSQEIQRMIGRALR 99
+ + A T R SGR G + G LR
Sbjct: 77 RVDASSIATTRAGRAAAVGETLRRRLESVVAGRERGVSDASGRASGSGVDAWDGGGIDLR 136
Query: 100 SVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHME---------DCSNK 150
S+ + +D G A AL D +
Sbjct: 137 SLCVRPGRARWTLAVDAVCACDRGSMLDALSVAVRGALADTKIPKVSLVGVGSDGEGGEL 196
Query: 151 FQLSQVLKGHVAAISCG-------MLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQ 203
+S + + +VD E++ + + + G + +
Sbjct: 197 EIDDDPDACTRVDVSRCGVVATTTKIGKHGVVDATDEEEACAEASMSVGVDRDGMVCG-E 255
Query: 204 GSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNEV 242
+ T + AM L+ +LI+ ++ V
Sbjct: 256 FTTGGETLDRGTADAMRKLSCRVGVELIEAMDAFLATAV 294
>gi|225711778|gb|ACO11735.1| Exosome complex exonuclease RRP43 [Caligus rogercresseyi]
Length = 279
Score = 48.7 bits (114), Expect = 7e-04, Method: Composition-based stats.
Identities = 36/232 (15%), Positives = 74/232 (31%), Gaps = 21/232 (9%)
Query: 24 AEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGNRVKREAVSGRQ 83
A+GS +V+ G T ++ TL+ + G+I + K + + +
Sbjct: 49 ADGSAIVRKGHTTVICGITLQI-ASLDEETPTKGYIVPHVDLPSMCHPRIYKSKGPTAEE 107
Query: 84 GGRSQEIQRMI---GRALRSVVDLSALGS--RQIIIDCDVIQADGGTRTAAITGAWVALH 138
+ + + G + ID + DG R A +T +AL
Sbjct: 108 AMILTKFIMDVILNSEVVDPKDLCIVPGEIVWVLKIDLTCLNQDGNLRDALVTALILALK 167
Query: 139 DCLQHME-------------DCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185
+ K S LK ++S ++ G ++ E+ T
Sbjct: 168 SLRFPKVVSYKAEDEDKTQINVFEKEHSSLRLKNIPVSVSIAVMEGERLLVDPTDEEETF 227
Query: 186 DVD-ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
D V+ + + + F + +++LA+ + + KL
Sbjct: 228 ATDSITVVLNAEEELCYLSKNGGEPIFD-ELMNKVIDLARAQALTVRKLINK 278
>gi|159111134|ref|XP_001705799.1| 3' exoribonuclease, putative [Giardia lamblia ATCC 50803]
gi|157433889|gb|EDO78125.1| 3 exoribonuclease, putative [Giardia lamblia ATCC 50803]
Length = 261
Score = 48.7 bits (114), Expect = 7e-04, Method: Composition-based stats.
Identities = 11/44 (25%), Positives = 22/44 (50%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE 44
+R GR++ + RE ++ + GS + G T L+ + L+
Sbjct: 5 LRPDGREKLEHREPTVLFNCISTSTGSVRFRLGGTDLIASVYLD 48
>gi|109129258|ref|XP_001101736.1| PREDICTED: exosome complex exonuclease MTR3-like [Macaca mulatta]
Length = 185
Score = 48.7 bits (114), Expect = 7e-04, Method: Composition-based stats.
Identities = 8/35 (22%), Positives = 16/35 (45%)
Query: 6 RQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTT 40
R ++R + + A+GS ++ G T +L
Sbjct: 31 RDPTRLRPVYARAGLLSQAKGSAYLEAGGTKVLCA 65
>gi|320582632|gb|EFW96849.1| hypothetical protein HPODL_1559 [Pichia angusta DL-1]
Length = 222
Score = 48.7 bits (114), Expect = 7e-04, Method: Composition-based stats.
Identities = 34/229 (14%), Positives = 71/229 (31%), Gaps = 17/229 (7%)
Query: 14 ISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGNR 73
I + +GS +FG T ++++ T + R
Sbjct: 3 IIVENDPLDQVDGSASYEFGATKVISSVTGPIESARPRNELPTK--------AYLDINIR 54
Query: 74 VKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGA 133
S R+ ++ +G+ L +V++L + I I +++ A
Sbjct: 55 PSSGVPSTRET----LLEHKLGQLLPTVINLDQYPRQTIQIAVQILKNGEPKEYTARQLV 110
Query: 134 WVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVM 193
+ + + + ++ + G + P G S V +
Sbjct: 111 AIINSVFVALINSGISLKSSFMATCCSIS--TEGEIKTSPTSSDLSGSVSHFVVVYSIKN 168
Query: 194 TDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNEV 242
+++ G TF Q F +L+ A I + + VIS+ V
Sbjct: 169 HQIDNLLFCDGLG---TFKQKQLFDVLDRAASEIHLNFQQIRQVISSHV 214
>gi|226480868|emb|CAX73531.1| hypothetical protein [Schistosoma japonicum]
Length = 310
Score = 48.7 bits (114), Expect = 8e-04, Method: Composition-based stats.
Identities = 18/70 (25%), Positives = 25/70 (35%), Gaps = 4/70 (5%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+RL R + +I +T V GS LVK G T ++ KV + N G I
Sbjct: 21 IRLEERDCLEFADIDVTADVLTSCHGSALVKVGRTQVIAGV----KVKVIPENGNSGSII 76
Query: 61 AEYGMLPRST 70
Sbjct: 77 CNVEFAGLCH 86
>gi|148697599|gb|EDL29546.1| exosome component 4, isoform CRA_c [Mus musculus]
Length = 211
Score = 48.7 bits (114), Expect = 8e-04, Method: Composition-based stats.
Identities = 42/189 (22%), Positives = 68/189 (35%), Gaps = 21/189 (11%)
Query: 55 KHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIII 114
+ +Y STG R +R + S E+ + + + + QI I
Sbjct: 34 DRALVNCQYSSATFSTGERKRRPHGDRK----SCEMGLQLRQTFEAAILTQLHPRSQIDI 89
Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPI 174
V+QADGGT A + A +A+ D M D V A S G + G +
Sbjct: 90 YVQVLQADGGTYAACVNAATLAVMDAGIPMRDF-------------VCACSAGFVDGTAL 136
Query: 175 VDLDYGEDSTIDVDANFVM-TDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
DL + E++ + SG I ++ + +DH +L A + L
Sbjct: 137 ADLSHVEEAAGGPQLALALLPASGQIALLEMDSR---LHEDHLEQVLEAAAQAARGVHTL 193
Query: 234 QKDVISNEV 242
V+ V
Sbjct: 194 LDLVVRQHV 202
>gi|58264608|ref|XP_569460.1| exosome complex exonuclease rrp45 [Cryptococcus neoformans var.
neoformans JEC21]
gi|134109839|ref|XP_776469.1| hypothetical protein CNBC5230 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50259145|gb|EAL21822.1| hypothetical protein CNBC5230 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|57225692|gb|AAW42153.1| exosome complex exonuclease rrp45, putative [Cryptococcus
neoformans var. neoformans JEC21]
Length = 281
Score = 48.7 bits (114), Expect = 8e-04, Method: Composition-based stats.
Identities = 33/253 (13%), Positives = 68/253 (26%), Gaps = 17/253 (6%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
RL GR QMR++ G + G T +L + P R + +
Sbjct: 24 RLDGRLPLQMRDVHYIFG---DELGCVECRLGKTAILAQVSATIVKPRDDRPYEGFLLIN 80
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGS--RQIIIDCDVI 119
S+ R GR E A+ G Q+ + +
Sbjct: 81 SEIGPMASSVYENGRPGDDEVMIGRLLEKSIRRTEAIDREALCILAGEKVWQLRLTLHFL 140
Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQ-----------VLKGHVAAISCGM 168
G A AL + + + + +
Sbjct: 141 SDSGNLLDCAALAGMAALKHFRKPDVEVIGDEVIIHSPEERAPVPLAIHHTPLCLTFAYF 200
Query: 169 LCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIA 228
PI+D + E + I + + A + ++ + D++
Sbjct: 201 ENLPPILDPSHVEMMLCSGTLTLTLNAQREICVLSKAG-GAPLGAEEIMGVVKVGVDKVR 259
Query: 229 DLIKLQKDVISNE 241
+L++ ++ + +
Sbjct: 260 ELVRHLEEELEKD 272
>gi|67585452|ref|XP_665105.1| exosome complex exonuclease RRP41 [Cryptosporidium hominis TU502]
gi|54655533|gb|EAL34876.1| exosome complex exonuclease RRP41 [Cryptosporidium hominis]
Length = 140
Score = 48.3 bits (113), Expect = 0.001, Method: Composition-based stats.
Identities = 21/112 (18%), Positives = 39/112 (34%), Gaps = 10/112 (8%)
Query: 1 MRLSGRQENQMREISLTRRVSKY---AEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHG 57
+R GR+ ++R I +G+ + G L+ + + I T +
Sbjct: 10 IRQDGRKLTEIRRIKCIINEGNQRGIEDGNVYFEQGQNKLIVSIIGPVPISGNINYTNNN 69
Query: 58 ---WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSA 106
I + + P S+ +R K G+ E +I R SV+
Sbjct: 70 SGVQINCNFRVSPFSSQDRRK----RGKNDRFCIESGLIISRTFSSVICDQY 117
>gi|118388111|ref|XP_001027156.1| 3' exoribonuclease family, domain 1 containing protein [Tetrahymena
thermophila]
gi|89308926|gb|EAS06914.1| 3' exoribonuclease family, domain 1 containing protein [Tetrahymena
thermophila SB210]
Length = 270
Score = 48.3 bits (113), Expect = 0.001, Method: Composition-based stats.
Identities = 29/252 (11%), Positives = 65/252 (25%), Gaps = 26/252 (10%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+R GR+ +Q RE + K A GS + D + KV + + G I
Sbjct: 21 IRGDGRKNDQSREYLIQTGQLKQANGSSFISLNDNSV--NIYTGIKVEIGETDNDEGKII 78
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSAL-GSRQIIIDCDVI 119
+ R+ NR + ++ + + ++++ S ++ ++
Sbjct: 79 LKIESAQRTEQNRDQENHINSDKNTLIYLEALLNKYLIQNICKKSLCIVEKKKCWILNID 138
Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHV---------AAISCGMLC 170
+ A A + L + S
Sbjct: 139 VFILESVEIAYLNLMAAGINAALEDLVLPKISITHNNLTNEDEITLIEEQFQSFSISRDF 198
Query: 171 GYPIVDLDYGEDSTIDVDANFV-------------MTDSGHIVEVQGSAERATFSQDHFF 217
P + L D + D I+ ++ + + +
Sbjct: 199 KMPKILLIGQIDRILVGDLTVDEYYSVENKYIVVVDVYENKIISIKKTG-SGFLPPEDYA 257
Query: 218 AMLNLAKDRIAD 229
++ A
Sbjct: 258 KIVQFALSSALK 269
>gi|289617251|emb|CBI56018.1| unnamed protein product [Sordaria macrospora]
Length = 286
Score = 48.3 bits (113), Expect = 0.001, Method: Composition-based stats.
Identities = 29/255 (11%), Positives = 63/255 (24%), Gaps = 23/255 (9%)
Query: 6 RQENQMREISLTRRVSKYAEGSCLVKF-----GDT--HLLTTATLEEKVPMWIRNTKHGW 58
R N +R++ L V+ A GS ++ G + L + +P + H
Sbjct: 36 RPANVIRKMYLKTGVTPSASGSAYLEIESSGNGGSGLKLSCSVHGPRALPRSTPFSPHII 95
Query: 59 ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEI-----QRMIGR------ALRSVVDLSAL 107
++ P +T R + + + R + +
Sbjct: 96 LSTHVKFAPFATKQRRGYIRDPIERDLGTHLEAALRGSIIADRWPKSGVDIIISIVEGEQ 155
Query: 108 GSRQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCG 167
+ IT A AL D D + V A
Sbjct: 156 DRETSKAQGIEAWDTMNALSGCITVASAALADAGIDCVDTVAGGVAALVQDACDDAAPSI 215
Query: 168 MLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRI 227
++ P + + + + + D + ++
Sbjct: 216 VVDPIPS-----EHEKVLAACCIAYLPTRQEVTNFWFKGDLPASDMDLYSQLVEKGIQAS 270
Query: 228 ADLIKLQKDVISNEV 242
++ D ++ V
Sbjct: 271 KSANRVLVDCLNETV 285
>gi|194874459|ref|XP_001973402.1| GG13362 [Drosophila erecta]
gi|190655185|gb|EDV52428.1| GG13362 [Drosophila erecta]
Length = 319
Score = 48.3 bits (113), Expect = 0.001, Method: Composition-based stats.
Identities = 26/151 (17%), Positives = 52/151 (34%), Gaps = 8/151 (5%)
Query: 10 QMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPM-WIRNTKHGWITAEYGMLPR 68
+ R + V GS +++G+T +L +++ R G +
Sbjct: 46 EPRNTFIRAGVLTTVRGSAYMEYGNTKVLAIVAPPKELLRASARRMNMGVLNCYVNFAAF 105
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
++G+ R + + M+ +A+ VV + + Q+ I ++ DG +
Sbjct: 106 ASGD-------LDSVTERERHLSGMLTKAMEPVVCRTEFLNFQLDIRVLILDDDGCLLST 158
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKG 159
AI VAL +C D
Sbjct: 159 AINCCGVALVECGISTYDLVTASTACIYRDH 189
>gi|171690730|ref|XP_001910290.1| hypothetical protein [Podospora anserina S mat+]
gi|170945313|emb|CAP71425.1| unnamed protein product [Podospora anserina S mat+]
Length = 287
Score = 47.9 bits (112), Expect = 0.001, Method: Composition-based stats.
Identities = 31/172 (18%), Positives = 47/172 (27%), Gaps = 19/172 (11%)
Query: 6 RQENQMREISLTRRVSKYAEGSCLVKFGDT--------HLLTTATLEEKVPMWIRNTKHG 57
R N +R+ L V+ A GS ++F + L T +P + H
Sbjct: 36 RAPNIIRKTFLKTGVTPSASGSAYLEFEGSSKSGVSGLKLSCTVHGPRSLPRSSPFSPHI 95
Query: 58 WITAEYGMLPRSTGNRVKR-EAVSGRQGGRSQEI----QRMIGR------ALRSVVDLSA 106
++A P +T R S R G E + R + +
Sbjct: 96 VLSAHVKYAPFATKQRRGYLRDPSERDLGTHLETALRGAIIADRWPKSGVDIIISIIEGD 155
Query: 107 LGSRQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLK 158
D + IT A AL D D + V
Sbjct: 156 QDRETSKSQGDETWDMMNVLSGCITVASAALADAGIDCVDTVAGGVAALVQD 207
>gi|119482067|ref|XP_001261062.1| 3' exoribonuclease family protein [Neosartorya fischeri NRRL 181]
gi|119409216|gb|EAW19165.1| 3' exoribonuclease family protein [Neosartorya fischeri NRRL 181]
Length = 320
Score = 47.9 bits (112), Expect = 0.001, Method: Composition-based stats.
Identities = 34/278 (12%), Positives = 74/278 (26%), Gaps = 53/278 (19%)
Query: 6 RQENQMREISLTRRVSKYAEGSCLVKFGD------------------THLL---TTATLE 44
RQ N++R+I L + A GS ++F + + L T
Sbjct: 38 RQPNELRKIFLKTGLIPSASGSSYLEF-EPSASLAAARSSPQSLIPPSSALKLACTVHGP 96
Query: 45 EKVPMWIRNTKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDL 104
+ +P + + +T P + R + +++ + ALR V+
Sbjct: 97 KPLPRSATFSPNLVLTTHVKYAPFAARRRKGHIRDT-----SERDLGVHLETALRGVIVA 151
Query: 105 SALGSRQIIIDCDVIQADGGTRTAAITGAWVALHD-----CLQHMEDCSNKFQLSQVLKG 159
+ I +++A+ + A +
Sbjct: 152 ERWPKSGLDITITILEAEDDRWWGDAPDSHDAPWGMMNVLAGCITAASAAIADARIDCLD 211
Query: 160 HVAAISCGMLCGYPIVDLDYGEDSTIDVD-----------ANFVMTDSGHIVEVQ--GSA 206
VA ++ +D D M I E+ G +
Sbjct: 212 LVAGGVAALVSDELPEGERSAPKLMLDTDPAEHRSILSACVVAYMPSRDEITEIWLKGDS 271
Query: 207 ERATFSQDH--------FFAMLNLAKDRIADLIKLQKD 236
+ + D ++ A+ L + ++
Sbjct: 272 SKVLLAPDDKRSGHDALIDGAVDAARGAHTVLAEAVRE 309
>gi|19113551|ref|NP_596759.1| exosome subunit Rrp42 (predicted) [Schizosaccharomyces pombe
972h-]
gi|21759395|sp|O60124|RRP42_SCHPO RecName: Full=Exosome complex component rrp42; AltName:
Full=Ribosomal RNA-processing protein 42
gi|3133104|emb|CAA19030.1| exosome subunit Rrp42 (predicted) [Schizosaccharomyces pombe]
Length = 299
Score = 47.9 bits (112), Expect = 0.001, Method: Composition-based stats.
Identities = 11/32 (34%), Positives = 16/32 (50%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKF 32
+R GR +Q+R +S V GS VK+
Sbjct: 22 IRNDGRSIDQLRPLSGQVDVLPGTNGSARVKW 53
>gi|195379434|ref|XP_002048484.1| GJ13996 [Drosophila virilis]
gi|194155642|gb|EDW70826.1| GJ13996 [Drosophila virilis]
Length = 329
Score = 47.9 bits (112), Expect = 0.001, Method: Composition-based stats.
Identities = 39/245 (15%), Positives = 74/245 (30%), Gaps = 24/245 (9%)
Query: 12 REISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEK-VPMWIRNTKHGWITAEYGMLPRST 70
R + V GS +++G+T +L + V R G I ++
Sbjct: 46 RSTFIRAGVLTTVRGSAYMEYGNTKVLAIVAPPRELVRSSARRVNMGVINCYVNFAAFAS 105
Query: 71 GNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAI 130
G R + + M+ +AL +V + + Q+ I ++ DG + AI
Sbjct: 106 GELESVP-------EREKHLGSMLTKALEPLVCRNEFLNFQLDIRVLILDDDGCLLSTAI 158
Query: 131 TGAWVALHDCLQHMEDCSNKFQLSQ----VLKGHVAAISCGMLCGYPIVDLDYGE----- 181
VAL +C D V A + + L
Sbjct: 159 NCCGVALIECGISTYDLITASTACIYRGYVFVNPSAKVEELLWQHRGGNALVGSSSSDSN 218
Query: 182 ----DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
+ N M + + Q + + +L+ + L +L + V
Sbjct: 219 KEAAIQEHGLLINASMDTFEQLAQCQQCGY---LKPETYVRLLDYTLEINKSLRQLIRRV 275
Query: 238 ISNEV 242
++ V
Sbjct: 276 LTERV 280
>gi|68066783|ref|XP_675365.1| hypothetical protein [Plasmodium berghei strain ANKA]
gi|56494511|emb|CAH99589.1| hypothetical protein PB107493.00.0 [Plasmodium berghei]
Length = 71
Score = 47.9 bits (112), Expect = 0.001, Method: Composition-based stats.
Identities = 10/38 (26%), Positives = 23/38 (60%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLT 39
R++ R+ N++R++ + + Y++ SC G+T +L
Sbjct: 32 RINNRKNNEIRDMFIKLGENGYSDASCFYSLGNTKILC 69
>gi|156083393|ref|XP_001609180.1| 3' exoribonuclease family, domain 1 containing protein [Babesia
bovis T2Bo]
gi|154796431|gb|EDO05612.1| 3' exoribonuclease family, domain 1 containing protein [Babesia
bovis]
Length = 196
Score = 47.9 bits (112), Expect = 0.001, Method: Composition-based stats.
Identities = 27/147 (18%), Positives = 48/147 (32%), Gaps = 7/147 (4%)
Query: 2 RLSGRQENQMREISLTRRVSKYAE-GSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
RL GR Q R+I + + A G+ +V GDT + + E VP + + G +T
Sbjct: 34 RLDGRTSIQPRKIHVE----QLANPGNVIVSLGDTIVFVAVSSEI-VPPNVEHPTEGIVT 88
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
+ P + N +A Q + + V L + + + V
Sbjct: 89 FSVELSPMCSLNYEPGKASDVEQEISYAIEKIYKDSGIIDVESLCIVSRKHVWC-LRVNI 147
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDC 147
+ +A+ L
Sbjct: 148 HILQNDGNLLDATNIAVFKALMSYRKP 174
>gi|255716660|ref|XP_002554611.1| KLTH0F09372p [Lachancea thermotolerans]
gi|238935994|emb|CAR24174.1| KLTH0F09372p [Lachancea thermotolerans]
Length = 263
Score = 47.5 bits (111), Expect = 0.001, Method: Composition-based stats.
Identities = 11/43 (25%), Positives = 17/43 (39%), Gaps = 1/43 (2%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSC-LVKFGDTHLLTTATL 43
R GR+ +Q R I + + GS +V T L +
Sbjct: 22 RPDGRKADQFRPIEVFTDFLPASNGSSKVVASDGTECLVSVKC 64
>gi|322815775|gb|EFZ24333.1| exosome-associated protein 1, putative [Trypanosoma cruzi]
Length = 383
Score = 47.5 bits (111), Expect = 0.001, Method: Composition-based stats.
Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 8/50 (16%)
Query: 1 MRLSGRQENQMREISLTRRVSKYA-------EGSCL-VKFGDTHLLTTAT 42
+R GR Q R ++ S A +GSC+ V+ G T +L AT
Sbjct: 23 VRGDGRTLTQRRPFAIRTNYSAGASIVEVEYDGSCVEVQCGATTVLAAAT 72
>gi|164660754|ref|XP_001731500.1| hypothetical protein MGL_1683 [Malassezia globosa CBS 7966]
gi|159105400|gb|EDP44286.1| hypothetical protein MGL_1683 [Malassezia globosa CBS 7966]
Length = 330
Score = 47.5 bits (111), Expect = 0.001, Method: Composition-based stats.
Identities = 34/258 (13%), Positives = 74/258 (28%), Gaps = 24/258 (9%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+R GR+ Q R + S+ G C V+ GDT + + P R +
Sbjct: 26 LRPDGRRFFQSRPV--QVNFSERL-GWCQVQLGDTIAVASVEAALSEPRRDRPYEGLVQI 82
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSA--------LGSRQI 112
+ R+ +R++ RA+R+ + +
Sbjct: 83 HADISPMAGVEYDSGGMFGASESRERAALFERLLERAVRNTEAVDREALCVIAGKVVWCV 142
Query: 113 IIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY 172
+ ++ G + AA+ + +AL + N V
Sbjct: 143 SLTVHLLADQGASVDAAVLASMLALRQYRRPEVTVENGVVTVHSSDERVPVPLACHHVPL 202
Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIV-------EVQGS---AERATFSQDHFF-AMLN 221
+ + + + + + S + +Q A ++L
Sbjct: 203 CVSYAVFLLEPKTEQEHALLQAQSLAVTARQQQQLAMQVDDAPANAIAVPVTLLDPSLLE 262
Query: 222 --LAKDRIADLIKLQKDV 237
LA I ++ Q+++
Sbjct: 263 KTLAHSTITFVMNAQREI 280
>gi|255721201|ref|XP_002545535.1| hypothetical protein CTRG_00316 [Candida tropicalis MYA-3404]
gi|240136024|gb|EER35577.1| hypothetical protein CTRG_00316 [Candida tropicalis MYA-3404]
Length = 291
Score = 47.5 bits (111), Expect = 0.001, Method: Composition-based stats.
Identities = 26/261 (9%), Positives = 65/261 (24%), Gaps = 20/261 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGD-THLLTT----ATLEEKVPMWIRNTK 55
+R R +Q R + + GS ++ GD + + + L + I
Sbjct: 22 IRPDLRSIHQYRPLVAKTSFLPGSNGSARIRTGDGSECIVSVKSKVVLMSQESNLIEVDV 81
Query: 56 HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115
+ + ++ + R + + +S ++
Sbjct: 82 DIIGHRDDSNYVSNLKFQLMNLLQQNFPHEILKLTTRYAFKLYIDCIVISHTSYPLSLLS 141
Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLK-------GHVAAISCGM 168
A TR + Q I+ G+
Sbjct: 142 LTTYLALKTTRLPLLISDVNDEEIAEQPTFSDDWDNAKLLQDCLENGKTFQPPIFITIGV 201
Query: 169 LCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGS--------AERATFSQDHFFAML 220
+ I+D E+ ++ ++ I + + + Q +
Sbjct: 202 IGNNLILDPSIEEEQVLENGLIVSFYNNKVITPISNTNFAVNSNNSNFKGLKQSLVVKSI 261
Query: 221 NLAKDRIADLIKLQKDVISNE 241
L ++K ++I +
Sbjct: 262 ALCNKYCPSIVKALDNLIEED 282
>gi|115388037|ref|XP_001211524.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
gi|114195608|gb|EAU37308.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
Length = 246
Score = 47.5 bits (111), Expect = 0.001, Method: Composition-based stats.
Identities = 23/153 (15%), Positives = 47/153 (30%), Gaps = 25/153 (16%)
Query: 6 RQENQMREISLTRRVSKYAEGSCLVK----------FGDTHLL----------TTATLEE 45
RQ N++R+I L + A GS ++ + L T +
Sbjct: 37 RQPNELRKIFLKTGLIPSASGSAYLEFEPSPSLAAARSNPKSLIPPSSALKLACTVHGPK 96
Query: 46 KVPMWIRNTKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLS 105
+P + + +T P + R +++ + ALR V+
Sbjct: 97 PLPRSATFSPNLVLTTHVKYAPFAARQRKGHIR-----DASERDLGVHLETALRGVIVAE 151
Query: 106 ALGSRQIIIDCDVIQADGGTRTAAITGAWVALH 138
+ I +++A+ A + A
Sbjct: 152 RWPKSGLDITITILEAEDDRWWADAPDSHDAAW 184
>gi|115608225|ref|XP_793149.2| PREDICTED: similar to Exosome component 5, partial
[Strongylocentrotus purpuratus]
gi|115608377|ref|XP_001181744.1| PREDICTED: similar to Exosome component 5, partial
[Strongylocentrotus purpuratus]
Length = 185
Score = 47.5 bits (111), Expect = 0.001, Method: Composition-based stats.
Identities = 29/209 (13%), Positives = 67/209 (32%), Gaps = 27/209 (12%)
Query: 34 DTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRM 93
DT ++ V +T Y +G R K ++RM
Sbjct: 1 DTSVMAAVYGPGDVKPNKALMDKATVTVTYKPKIGISGVREKA-------------LERM 47
Query: 94 IGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQL 153
I +V+ + + I IQ G +I A +A+ + M+
Sbjct: 48 IRNTCETVLLTTLFPRSSVDIIVQEIQDAGALLACSINAACLAMINAGIPMKCT------ 101
Query: 154 SQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQ 213
A SC M+ + +D ++ T D + + S+ + + S
Sbjct: 102 --------VAASCCMMGKDEELIMDPTKEQTKDAECVLTSAIDSSAHSLIASSMQGSCSV 153
Query: 214 DHFFAMLNLAKDRIADLIKLQKDVISNEV 242
+ + ++++ + + + ++ + +
Sbjct: 154 EQYHKLMSVCQKACDKVFEFYREAMERTL 182
>gi|162605798|ref|XP_001713414.1| hypothetical protein GTHECHR3079 [Guillardia theta]
gi|13794346|gb|AAK39723.1|AF083031_80 hypothetical protein [Guillardia theta]
Length = 209
Score = 47.5 bits (111), Expect = 0.002, Method: Composition-based stats.
Identities = 12/38 (31%), Positives = 19/38 (50%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLL 38
+RL GR N++R I + + K S + G T +L
Sbjct: 4 IRLDGRACNEIRPIKIKSNIFKNYAFSTEISIGATKIL 41
>gi|25152573|ref|NP_497279.2| EXOSome (multiexonuclease complex) component family member
(exos-4.2) [Caenorhabditis elegans]
gi|16950528|gb|AAL32260.1|AC006815_1 Arp2/3 complex component protein 4 [Caenorhabditis elegans]
Length = 241
Score = 47.5 bits (111), Expect = 0.002, Method: Composition-based stats.
Identities = 11/51 (21%), Positives = 19/51 (37%)
Query: 6 RQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKH 56
R R + + V +GS +FG+T +L T + W +
Sbjct: 32 RANTAFRPLCVKCGVFGAQDGSGYAEFGNTRVLAQITGPDGDGKWEEDRAK 82
>gi|67470372|ref|XP_651154.1| 3' exoribonuclease family protein [Entamoeba histolytica HM-1:IMSS]
gi|56467852|gb|EAL45767.1| 3' exoribonuclease family protein [Entamoeba histolytica HM-1:IMSS]
Length = 223
Score = 47.5 bits (111), Expect = 0.002, Method: Composition-based stats.
Identities = 36/241 (14%), Positives = 70/241 (29%), Gaps = 27/241 (11%)
Query: 4 SGRQENQ---MREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
R + +R IS R VS ++G + K G + +++ P N +
Sbjct: 4 DKRTIIESGKIRSISYVRDVSSKSDGCYMFKQGKSCVISGVNAPRDCPKKEANPDRAIVK 63
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
E R + + + ++S V+ + L + +V
Sbjct: 64 VEVY----------------ERCSSFDNQRRTELEEFIKSGVEWTVLSEQYPNGLINVCN 107
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
+ A L + + ++ G A IV
Sbjct: 108 QIVKDDGSIEAVTMNAAMCALL-----FSGVDMKGIVVGMCVAGKINDKGTIEIVIDPDD 162
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
S T G IV ++ + S D ++++K ++K K VI
Sbjct: 163 SISYKWKLFTIWDTVKGEIVAMKMKGK---CSDDQLKMSMDVSKKNAVKIVKAIKMVIEK 219
Query: 241 E 241
+
Sbjct: 220 Q 220
>gi|302505236|ref|XP_003014839.1| hypothetical protein ARB_07400 [Arthroderma benhamiae CBS 112371]
gi|291178145|gb|EFE33936.1| hypothetical protein ARB_07400 [Arthroderma benhamiae CBS 112371]
Length = 293
Score = 47.5 bits (111), Expect = 0.002, Method: Composition-based stats.
Identities = 30/270 (11%), Positives = 63/270 (23%), Gaps = 52/270 (19%)
Query: 14 ISLTRRVSKYAEGSCLVKF-------GDT--------HLLTTATLEEKVPMWIRNTKHGW 58
+ L V A GS + G + L+ + + + + +
Sbjct: 6 LDLKTGVIPSASGSAYFELHPSNSSSGGSLIPPSSSLKLICSVNGPKPLSRSTPFSPNLL 65
Query: 59 ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDV 118
++A P + R +++ + ALR + + I +
Sbjct: 66 LSAHVKFAPFANRRRRAHVRDM-----NERDLGVHLENALRGAIIGDRWPKSGLDITIMI 120
Query: 119 IQ----------------------ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQV 156
++ +T A A+ D D + V
Sbjct: 121 LEGEDDRWWGDMSTAETLTGSDGWGMMNVLAHCVTVASAAIADARIDCLDLVAGGVAAVV 180
Query: 157 LKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQD-- 214
+ + + M I E+ + S D
Sbjct: 181 GTCSSGEGATSSTKTVVLDPDPSEHLNISSSCVVGYMPSLDEITELWLKGDMPGASSDGT 240
Query: 215 --------HFFAMLNLAKDRIADLIKLQKD 236
+ AK + LI+ K+
Sbjct: 241 YDSRNHDALMGGAIAAAKASHSVLIEAVKE 270
>gi|313212644|emb|CBY36592.1| unnamed protein product [Oikopleura dioica]
gi|313225048|emb|CBY20841.1| unnamed protein product [Oikopleura dioica]
Length = 232
Score = 47.1 bits (110), Expect = 0.002, Method: Composition-based stats.
Identities = 30/248 (12%), Positives = 67/248 (27%), Gaps = 34/248 (13%)
Query: 5 GRQENQMRE--------ISLTRRVSKYAEGSCLV--KFGDTHLLTTATLEEKVPMWIRNT 54
GR+E ++ + + +GS ++ + G ++ + ++
Sbjct: 2 GRREAEIHPSQVQKQKEVQVRLGCLSRCDGSAMLVSELG--TVVCGVNGPVEAKEREQD- 58
Query: 55 KHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIII 114
P V S +Q G L + + R I
Sbjct: 59 ------------PTRVTVNVILHPPSNQQTGPIHRQIERTISGLLASLVQKEANPRCQIQ 106
Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPI 174
T + A +A+ D M + ++ V I
Sbjct: 107 IILQPLESEFCVTPLVNCAILAMLDAGIQMHHVAAGGTVALVENKIE-----EKQQLDLI 161
Query: 175 VDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
+ + + V + +G ++ VQ + H L+ A + + L
Sbjct: 162 GNPTLEDIEKSIGSIHAVFSRTGKLLAVQSDGDFQG----HLMDALHKAANSAKPVFNLF 217
Query: 235 KDVISNEV 242
+D + +
Sbjct: 218 QDAVQKRL 225
>gi|219118941|ref|XP_002180237.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217408494|gb|EEC48428.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 212
Score = 47.1 bits (110), Expect = 0.002, Method: Composition-based stats.
Identities = 40/223 (17%), Positives = 67/223 (30%), Gaps = 21/223 (9%)
Query: 20 VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGNRVKREAV 79
V + A+GS LV+ G T ++ E M
Sbjct: 1 VLEAAQGSALVELGHTKVIGQVLGPVTASSSHLPPSLQLNMEEGVMHFELLSTGKINSWT 60
Query: 80 SGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVALHD 139
R+ + AL + V L +++ V+Q DG A IT A +AL D
Sbjct: 61 IARETDL----ASNLSDALSASVPLRQYPKCALLVKITVLQDDGSILPACITAATLALAD 116
Query: 140 CLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVM-TDSGH 198
M D VAA + + G + D E S D + +
Sbjct: 117 ASVEMYDV-------------VAASTVAVCDGLLVADPTLREVSAADAVMTLAILPNWKE 163
Query: 199 IVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
Q S + + L ++ + + ++ + E
Sbjct: 164 STLWQQSGR---LNPQRANEAMELCRNGCRTMHRFLREHLIQE 203
>gi|47210410|emb|CAF91678.1| unnamed protein product [Tetraodon nigroviridis]
Length = 260
Score = 47.1 bits (110), Expect = 0.002, Method: Composition-based stats.
Identities = 9/52 (17%), Positives = 19/52 (36%)
Query: 6 RQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHG 57
R++ +R + + + A+GS ++ G T LL +
Sbjct: 40 REQADVRPVFVRCGLGSQAKGSAYMEAGATKLLCCVYGPRETERKDETDMRC 91
>gi|71656277|ref|XP_816688.1| exosome-associated protein 1 [Trypanosoma cruzi strain CL Brener]
gi|70881833|gb|EAN94837.1| exosome-associated protein 1, putative [Trypanosoma cruzi]
Length = 383
Score = 47.1 bits (110), Expect = 0.002, Method: Composition-based stats.
Identities = 15/50 (30%), Positives = 23/50 (46%), Gaps = 8/50 (16%)
Query: 1 MRLSGRQENQMREISLTRRVSKYA-------EGSCL-VKFGDTHLLTTAT 42
+R GR Q R ++ S A +GSC+ V+ G T ++ AT
Sbjct: 23 VRGDGRTLTQRRPFTIRTNYSAGASIVDVEYDGSCVEVQCGATTVVAAAT 72
>gi|67523393|ref|XP_659757.1| hypothetical protein AN2153.2 [Aspergillus nidulans FGSC A4]
gi|40745041|gb|EAA64197.1| hypothetical protein AN2153.2 [Aspergillus nidulans FGSC A4]
gi|259487532|tpe|CBF86279.1| TPA: 3' exoribonuclease family protein (AFU_orthologue;
AFUA_2G15980) [Aspergillus nidulans FGSC A4]
Length = 324
Score = 47.1 bits (110), Expect = 0.002, Method: Composition-based stats.
Identities = 38/274 (13%), Positives = 70/274 (25%), Gaps = 44/274 (16%)
Query: 6 RQENQMREISLTRRVSKYAEGSCLVKFGD---------------T------HLLTTATLE 44
RQ N++R+I L + A GS ++F + T L T
Sbjct: 39 RQPNELRKIFLKTGLIPSASGSSYLEF-EPSASLSAARASPKFITPPSSSLKLACTVHGP 97
Query: 45 EKVPMWIRNTKHGWITAEYGMLPRSTGNRVKR-EAVSGRQGGRSQEIQ----RMIGR--- 96
+ +P + + +T P + R S R G E + R
Sbjct: 98 KPLPRSATFSPNLVLTTHVKYAPFAARKRKGHIRDASERDLGVHLETALRGVIVAERWPK 157
Query: 97 -ALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQ 155
L + + + D + G A +
Sbjct: 158 SGLDITITILEAEDDRWWGDAPDSHDAAWGMMNVLAGCITAASAAIADARIDCLDLVAGG 217
Query: 156 VLKGHVAAISCGMLCGYPIVDL---DYGEDSTIDVDANFVMTDSGHIVEVQGSAERAT-- 210
V V ++ G + L S + M I E+ + +
Sbjct: 218 VAAVVVDKLADGNGNSCARLMLDTDPAEHQSILSACVVAYMPGRDEITELWLKGDNSKAA 277
Query: 211 -------FSQDHFFA-MLNLAKDRIADLIKLQKD 236
S D + A+ + L + ++
Sbjct: 278 VGTTDQNLSHDALIDGAVVAARGAHSVLAEAVRE 311
>gi|156065953|ref|XP_001598898.1| hypothetical protein SS1G_00987 [Sclerotinia sclerotiorum 1980]
gi|154691846|gb|EDN91584.1| hypothetical protein SS1G_00987 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 377
Score = 47.1 bits (110), Expect = 0.002, Method: Composition-based stats.
Identities = 11/51 (21%), Positives = 16/51 (31%), Gaps = 1/51 (1%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGD-THLLTTATLEEKVPMW 50
+R R Q R + V GS + F D T + E +
Sbjct: 29 IRPDARTSTQFRPLIAECDVLPGTNGSARICFADGTEAIVGVKCEVEKSRP 79
>gi|116195962|ref|XP_001223793.1| hypothetical protein CHGG_04579 [Chaetomium globosum CBS 148.51]
gi|88180492|gb|EAQ87960.1| hypothetical protein CHGG_04579 [Chaetomium globosum CBS 148.51]
Length = 286
Score = 47.1 bits (110), Expect = 0.002, Method: Composition-based stats.
Identities = 22/137 (16%), Positives = 43/137 (31%), Gaps = 15/137 (10%)
Query: 6 RQENQMREISLTRRVSKYAEGSCLVKFGDTHLL---------TTATLEEKVPMWIRNTKH 56
R N R++ L V+ A GS ++ +T + +P + H
Sbjct: 35 RPPNTTRKMYLKTGVTPSASGSAYLEI-ETSATPGVSGLKLSCSVHGPRSLPRSAPFSPH 93
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
++ P +T R R + + ALR + + I
Sbjct: 94 IVLSTHVKYAPFATKQRRGYLRD---PSERD--LGIHLEAALRGAIIADRWPKSGVDIII 148
Query: 117 DVIQADGGTRTAAITGA 133
+++ D T+ + G
Sbjct: 149 SIVEGDQDRETSQLQGD 165
>gi|241952166|ref|XP_002418805.1| exosome complex exonuclease, putative; ribosomal RNA-processing
protein, putative [Candida dubliniensis CD36]
gi|223642144|emb|CAX44110.1| exosome complex exonuclease, putative [Candida dubliniensis CD36]
Length = 331
Score = 47.1 bits (110), Expect = 0.002, Method: Composition-based stats.
Identities = 45/285 (15%), Positives = 80/285 (28%), Gaps = 57/285 (20%)
Query: 6 RQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGM 65
R+ NQ R I + ++Y GS + G T ++ T P R +
Sbjct: 36 RKFNQFRPIDIKLSNTRY--GSVELSLGKTKVMVNITSRITEPYQDRPFEGIMTINCE-- 91
Query: 66 LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALG--------SRQIIIDCD 117
+ + + + I R + RA+R + ++IID
Sbjct: 92 ---IPNHIKIQSNDNDNEDEFINLINRALDRAIRRSNAVDLENLCIIAGEKVWELIIDLQ 148
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPI--- 174
V+ DG + AL D + +N S I + I
Sbjct: 149 VLNYDGNLIDSGCLAIITALLDFKKPDVTINNNNTSSNSSTSGNIIIHDDEMKRPFIELS 208
Query: 175 ---------------------------------VDLDYGEDSTIDVDANFVMTDSGHIVE 201
+D D E+S D M + +++
Sbjct: 209 ILHIPICLTFSLFNLGSKETNLKTNDIDQEIWLLDGDVMEESCRDGYLIMTMNQNHELIQ 268
Query: 202 VQGSAER--ATFSQDHFFAMLNLAKDRIADL---IKLQKDVISNE 241
+ S D ++NL + I ++ L K + N
Sbjct: 269 LSKIGGGINGGVSIDG-QQLINLCHESIDEINRLTNLVKSTVKNH 312
>gi|115705881|ref|XP_001204175.1| PREDICTED: similar to exosome component 6, partial
[Strongylocentrotus purpuratus]
gi|115757243|ref|XP_789674.2| PREDICTED: similar to exosome component 6, partial
[Strongylocentrotus purpuratus]
Length = 203
Score = 46.8 bits (109), Expect = 0.002, Method: Composition-based stats.
Identities = 10/53 (18%), Positives = 20/53 (37%)
Query: 16 LTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPR 68
L A+GSC ++ +T ++ +VP +G + E+
Sbjct: 1 LKAGAVSQAKGSCYMEMKNTKVICAVYGPREVPRRDGFIINGQLRCEFKFATF 53
>gi|296421352|ref|XP_002840229.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295636443|emb|CAZ84420.1| unnamed protein product [Tuber melanosporum]
Length = 279
Score = 46.8 bits (109), Expect = 0.003, Method: Composition-based stats.
Identities = 8/34 (23%), Positives = 13/34 (38%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGD 34
+R R Q R + + GS + +GD
Sbjct: 32 IRPDSRTPTQFRPLVAESDILPSTNGSARMIWGD 65
>gi|242779049|ref|XP_002479363.1| 3' exoribonuclease family protein (Rrp42), putative [Talaromyces
stipitatus ATCC 10500]
gi|218722982|gb|EED22400.1| 3' exoribonuclease family protein (Rrp42), putative [Talaromyces
stipitatus ATCC 10500]
Length = 401
Score = 46.8 bits (109), Expect = 0.003, Method: Composition-based stats.
Identities = 10/48 (20%), Positives = 18/48 (37%), Gaps = 1/48 (2%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGD-THLLTTATLEEKV 47
+R GR Q R ++ + GS + F D + + E +
Sbjct: 34 IRPDGRSPTQFRFLTAETGILPGTIGSARIGFADGSEAIVGVKAELER 81
>gi|238571033|ref|XP_002386955.1| hypothetical protein MPER_14569 [Moniliophthora perniciosa FA553]
gi|215440457|gb|EEB87885.1| hypothetical protein MPER_14569 [Moniliophthora perniciosa FA553]
Length = 81
Score = 46.8 bits (109), Expect = 0.003, Method: Composition-based stats.
Identities = 12/80 (15%), Positives = 24/80 (30%), Gaps = 1/80 (1%)
Query: 16 LTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGNRVK 75
T A GS LV+ G+T ++ E P + G++ + +
Sbjct: 3 FTIGSISTANGSALVRMGNTTVVCGVKAEIAEPE-LDKPNDGFLVPNIDLPAICSSKFKP 61
Query: 76 REAVSGRQGGRSQEIQRMIG 95
Q + ++
Sbjct: 62 GPPSEEAQVISERLNDALVE 81
>gi|308481633|ref|XP_003103021.1| CRE-EXOS-4.2 protein [Caenorhabditis remanei]
gi|308260397|gb|EFP04350.1| CRE-EXOS-4.2 protein [Caenorhabditis remanei]
Length = 273
Score = 46.8 bits (109), Expect = 0.003, Method: Composition-based stats.
Identities = 12/47 (25%), Positives = 18/47 (38%)
Query: 6 RQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIR 52
R R + + V +GS +FG+T +L T E W
Sbjct: 64 RSATAFRPLCVKCGVFGAQDGSGYAEFGNTRVLAQITGPEGDGKWEE 110
>gi|169839599|ref|ZP_02872787.1| polynucleotide phosphorylase/polyadenylase [candidate division TM7
single-cell isolate TM7a]
Length = 70
Score = 46.8 bits (109), Expect = 0.003, Method: Composition-based stats.
Identities = 7/62 (11%), Positives = 22/62 (35%), Gaps = 3/62 (4%)
Query: 175 VDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
++ + ++ + T + V+ A+ S++ + +RI ++ Q
Sbjct: 1 MNPTGEQLLESEIQLSVAGTKD-AVTMVEAGAKE--VSEEVMLEAIMFGHERIKEICAEQ 57
Query: 235 KD 236
Sbjct: 58 DK 59
>gi|115947457|ref|XP_794197.2| PREDICTED: similar to Exosc7 protein, partial [Strongylocentrotus
purpuratus]
Length = 209
Score = 46.8 bits (109), Expect = 0.003, Method: Composition-based stats.
Identities = 11/38 (28%), Positives = 15/38 (39%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLL 38
+R GR R L V GS +K +T +L
Sbjct: 3 LRSDGRTCLSYRNFELECGVVSNTSGSARLKLSNTQML 40
>gi|159469337|ref|XP_001692824.1| exosome complex exonuclease [Chlamydomonas reinhardtii]
gi|158278077|gb|EDP03843.1| exosome complex exonuclease [Chlamydomonas reinhardtii]
Length = 242
Score = 46.8 bits (109), Expect = 0.003, Method: Composition-based stats.
Identities = 27/241 (11%), Positives = 52/241 (21%), Gaps = 17/241 (7%)
Query: 12 REISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG 71
R + R V A+GS + +L + + + + +
Sbjct: 3 RTLVCERAVLDRADGSAKWTQEGSSVLAAVYGPRQAKLQKEDAERAVVEV-------VFK 55
Query: 72 NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAIT 131
R + R L S + Q++ D + AA
Sbjct: 56 PRAGLQGHEDRSLELEIRGILEGVIPLGMFPRTSVMVVLQVLQDDGGALSCALNAAAAAL 115
Query: 132 GAWVALHDCLQHMEDCSNKFQLSQVLKGH-----VAAISCGMLCGYPIVDLDYGEDSTID 186
+ + C VL AA + +
Sbjct: 116 VDAGVPLNSMFSSVSCVLTSDRRLVLDPDALEEQAAAARFCFTYPHHFDLTTAVPAAATG 175
Query: 187 VDANFVMTDSGHIVEVQGSA-----ERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
D V G + FS D L + + + ++
Sbjct: 176 ATTASPGADDASATAVVGESVLGSRCVGAFSGDELLDAAALCRRGCERVATFARLSLAKS 235
Query: 242 V 242
+
Sbjct: 236 L 236
>gi|223557964|gb|ACM90971.1| polyribonucleotide nucleotidyltransferase [uncultured bacterium
URE12]
Length = 208
Score = 46.4 bits (108), Expect = 0.003, Method: Composition-based stats.
Identities = 6/53 (11%), Positives = 17/53 (32%), Gaps = 2/53 (3%)
Query: 187 VDANFVMTDSGHIVEVQGSAE-RATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
+D + +G + Q + + D + A ++ L + +
Sbjct: 1 MDFKLAGSRNG-VTAFQMDVKLASGIPMDIMKEAIEQATRGREHILGLMEKAL 52
>gi|323334326|gb|EGA75707.1| Rrp42p [Saccharomyces cerevisiae AWRI796]
Length = 265
Score = 46.4 bits (108), Expect = 0.003, Method: Composition-based stats.
Identities = 8/30 (26%), Positives = 13/30 (43%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLV 30
+R GR +Q R I + + GS +
Sbjct: 21 IRPDGRLPHQFRPIEIFTDFLPSSNGSSRI 50
>gi|323305688|gb|EGA59428.1| Rrp42p [Saccharomyces cerevisiae FostersB]
Length = 106
Score = 46.4 bits (108), Expect = 0.003, Method: Composition-based stats.
Identities = 8/30 (26%), Positives = 13/30 (43%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLV 30
+R GR +Q R I + + GS +
Sbjct: 21 IRPDGRLPHQFRPIEIFTDFLPSSNGSSRI 50
>gi|151941892|gb|EDN60248.1| exosome 3'-5'-exoribonuclease complex component [Saccharomyces
cerevisiae YJM789]
gi|190405114|gb|EDV08381.1| exosome 3->5 exoribonuclease complex component with Rrp4p
[Saccharomyces cerevisiae RM11-1a]
gi|207347024|gb|EDZ73342.1| YDL111Cp-like protein [Saccharomyces cerevisiae AWRI1631]
gi|256274098|gb|EEU09009.1| Rrp42p [Saccharomyces cerevisiae JAY291]
gi|259145134|emb|CAY78398.1| Rrp42p [Saccharomyces cerevisiae EC1118]
gi|323338437|gb|EGA79662.1| Rrp42p [Saccharomyces cerevisiae Vin13]
gi|323349440|gb|EGA83664.1| Rrp42p [Saccharomyces cerevisiae Lalvin QA23]
gi|323355827|gb|EGA87640.1| Rrp42p [Saccharomyces cerevisiae VL3]
Length = 265
Score = 46.4 bits (108), Expect = 0.003, Method: Composition-based stats.
Identities = 8/30 (26%), Positives = 13/30 (43%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLV 30
+R GR +Q R I + + GS +
Sbjct: 21 IRPDGRLPHQFRPIEIFTDFLPSSNGSSRI 50
>gi|6320092|ref|NP_010172.1| Rrp42p [Saccharomyces cerevisiae S288c]
gi|2498862|sp|Q12277|RRP42_YEAST RecName: Full=Exosome complex component RRP42; AltName:
Full=Ribosomal RNA-processing protein 42
gi|1199537|emb|CAA64901.1| ORF 2315 [Saccharomyces cerevisiae]
gi|1431160|emb|CAA98678.1| RRP42 [Saccharomyces cerevisiae]
gi|285810925|tpg|DAA11749.1| TPA: Rrp42p [Saccharomyces cerevisiae S288c]
Length = 265
Score = 46.4 bits (108), Expect = 0.003, Method: Composition-based stats.
Identities = 8/30 (26%), Positives = 13/30 (43%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLV 30
+R GR +Q R I + + GS +
Sbjct: 21 IRPDGRLPHQFRPIEIFTDFLPSSNGSSRI 50
>gi|320167933|gb|EFW44832.1| conserved hypothetical protein [Capsaspora owczarzaki ATCC 30864]
Length = 229
Score = 46.4 bits (108), Expect = 0.003, Method: Composition-based stats.
Identities = 33/228 (14%), Positives = 64/228 (28%), Gaps = 18/228 (7%)
Query: 16 LTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPM---WIRNTKHGWITAEYGMLPRSTGN 72
++ +A GS ++ T ++ + + + + + P ++
Sbjct: 1 MSTGTVSHANGSAYLELAGTRVMAAVYGPRENTRAGGLQQFNEQAVLQCDVARAPFASPR 60
Query: 73 RVKREAVSGRQG--GRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAI 130
R ++ + AL+S V L I + +I DGG AAI
Sbjct: 61 DDARIGTDANTSAAAADRQFATSVATALQSSVRLEKYAKSSIDLFVTIIGDDGGALAAAI 120
Query: 131 TGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDAN 190
+AL D M D ++ AA + +L ++
Sbjct: 121 NCCTLALADAGIEMNDMVTAASVAL------AANTNIVLWDPTHLEESRASAIATQALRV 174
Query: 191 FVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
+ + S E S L L L + +
Sbjct: 175 ----SDNLVTLLDQSGES---SLKLSVKALEACSSMSVQLHGLMQQTL 215
>gi|115922537|ref|XP_001179844.1| PREDICTED: hypothetical protein [Strongylocentrotus purpuratus]
Length = 229
Score = 46.4 bits (108), Expect = 0.003, Method: Composition-based stats.
Identities = 11/38 (28%), Positives = 15/38 (39%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLL 38
+R GR R L V GS +K +T +L
Sbjct: 23 LRSDGRTCLSYRNFELECGVVSNTSGSARLKLSNTQML 60
>gi|94502417|ref|ZP_01308863.1| polyribonucleotide nucleotidyltransferase [Candidatus Sulcia
muelleri str. Hc (Homalodisca coagulata)]
gi|94451026|gb|EAT14005.1| polyribonucleotide nucleotidyltransferase [Candidatus Sulcia
muelleri str. Hc (Homalodisca coagulata)]
Length = 267
Score = 46.4 bits (108), Expect = 0.003, Method: Composition-based stats.
Identities = 18/111 (16%), Positives = 38/111 (34%), Gaps = 8/111 (7%)
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
+ + +AL D ++ + + ++ + DL ED D+D
Sbjct: 2 TVCASTLALMDSGIIVKRPVSGISMGLIMNYLTGEA-------IILSDLLGDEDYIGDMD 54
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
T+ G + Q + + + D + AK + +IK +S
Sbjct: 55 FKITGTEYG-MTACQMDIKISGITYDVLSYTIFKAKKGLLFIIKKMLTTLS 104
>gi|219129572|ref|XP_002184959.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217403454|gb|EEC43406.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 269
Score = 46.4 bits (108), Expect = 0.004, Method: Composition-based stats.
Identities = 37/273 (13%), Positives = 75/273 (27%), Gaps = 37/273 (13%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGS-CLVKFGD-THLLTTATLEEKVPMWIRNTKHGW 58
+R GR NQ+R S ++++ G+ C ++G T + T T E +P G
Sbjct: 1 LRTDGRVWNQLR--SSRLSLTRWENGATCTTQWGKGTRVSCTCTAEL-LPPNPDRPNEGM 57
Query: 59 ITAEYGMLPRSTGNRVKREAVSG-----RQGGRSQEIQRMIGRALRSVVDLSALGSRQII 113
+ + P ++ + V+ R R + V + +
Sbjct: 58 VALSVDLSPSASTAFRQAAPVTTGGSILRSLERVLLTGGALDTEALCVTPQYWVWKLSLA 117
Query: 114 IDC--------------DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKG 159
+ + + A + K + L
Sbjct: 118 VTVLDDGGNLMDASVLAALAALRHYRKPHVELAAEGSNSGVPPRWIQSDLKEPVPLPLHH 177
Query: 160 HVAAISCGMLCGY------------PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAE 207
+IS +L +VD D E+ + M G + +
Sbjct: 178 TPLSISFALLPHDTAAQSTASAKVTLLVDPDAREELVSVGTLSIAMNVHGEVCLLDFGG- 236
Query: 208 RATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
+ + LA + DL + + +
Sbjct: 237 GCELATERLREAYRLAAQHVQDLCQALETSLQQ 269
>gi|190348048|gb|EDK40434.2| hypothetical protein PGUG_04533 [Meyerozyma guilliermondii ATCC
6260]
Length = 314
Score = 46.4 bits (108), Expect = 0.004, Method: Composition-based stats.
Identities = 29/262 (11%), Positives = 69/262 (26%), Gaps = 26/262 (9%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKF--G-------DTHLLTTA--TLEEKVPM 49
+R R + Q R + + GS ++ G + ++ TA + + +
Sbjct: 50 IRPDRRADYQFRPLEAKTGFLPGSNGSARIRLMDGSECIVSVKSKVVITALESALIECDV 109
Query: 50 WIRNTKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGS 109
I + T + + + + +V A
Sbjct: 110 DISGHRDDSNYVSNLKYNLET-----VLLENFPTSCLNLTSKYSYKLFIDCIVISHASYP 164
Query: 110 RQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKF--QLSQVLKGHVAAISCG 167
++ + I+ A + D ++ +I G
Sbjct: 165 LGLMSLACYLALKTSRLPLLISEVNDADIEEQPTFSDDWDEARNLAEMQDFHPPISIVAG 224
Query: 168 MLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEV--------QGSAERATFSQDHFFAM 219
++ + D E ++ + I V + S
Sbjct: 225 LIGSNILFDPSAEEVQVLENGLLLTWYNGKVISPVSNVNLATNSKNTNFKGLSPHLITKS 284
Query: 220 LNLAKDRIADLIKLQKDVISNE 241
+++A+ D++K VI +E
Sbjct: 285 ISMAQKYCGDIVKALDSVIDSE 306
>gi|45187578|ref|NP_983801.1| ADL295Wp [Ashbya gossypii ATCC 10895]
gi|44982316|gb|AAS51625.1| ADL295Wp [Ashbya gossypii ATCC 10895]
Length = 263
Score = 46.4 bits (108), Expect = 0.004, Method: Composition-based stats.
Identities = 8/43 (18%), Positives = 16/43 (37%), Gaps = 1/43 (2%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSC-LVKFGDTHLLTTAT 42
+R GR Q R + + + GS ++ + L +
Sbjct: 21 IRADGRAAAQFRPLDVAVDFLPNSNGSARIITSDGSEALVSVK 63
>gi|221219924|gb|ACM08623.1| Exosome complex exonuclease RRP45 [Salmo salar]
Length = 114
Score = 46.0 bits (107), Expect = 0.004, Method: Composition-based stats.
Identities = 17/74 (22%), Positives = 26/74 (35%), Gaps = 4/74 (5%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
RL GRQ R I ++ G C V G T ++ + E P R G +
Sbjct: 23 RLDGRQTYDYRSIKISFGTD---YGCCFVDLGKTRIMAQVSCELITPKENRP-NEGIMFF 78
Query: 62 EYGMLPRSTGNRVK 75
+ P ++
Sbjct: 79 NIELSPMASPAFEM 92
>gi|207111841|ref|ZP_03246003.1| polynucleotide phosphorylase/polyadenylase [Helicobacter pylori
HPKX_438_CA4C1]
Length = 37
Score = 46.0 bits (107), Expect = 0.004, Method: Composition-based stats.
Identities = 7/31 (22%), Positives = 12/31 (38%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVK 31
+R R ++R I + + A S L
Sbjct: 7 IRPDKRALEEVRPILIESDLLPMAHSSILFT 37
>gi|213402699|ref|XP_002172122.1| conserved hypothetical protein [Schizosaccharomyces japonicus
yFS275]
gi|212000169|gb|EEB05829.1| conserved hypothetical protein [Schizosaccharomyces japonicus
yFS275]
Length = 251
Score = 46.0 bits (107), Expect = 0.004, Method: Composition-based stats.
Identities = 31/222 (13%), Positives = 65/222 (29%), Gaps = 14/222 (6%)
Query: 19 RVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGNRVKREA 78
+ A G+ ++ G+ + + +T E P + R
Sbjct: 18 GWTTKANGNAYLESGNIKIACSVFGPRPTKTS-SFHSIAKLTCELKFSPFAQTVRKSNV- 75
Query: 79 VSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVALH 138
Q ++ + I R+L + L I + ++++DG T A +L
Sbjct: 76 ----QDINERDFSQHIERSLAPSIMLHLYPKSSIDVYIQILESDGQLATIAAAITCASLA 131
Query: 139 DCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGH 198
++ S + K A+ P + D + M G
Sbjct: 132 IANAKIDCIDIVTGASALYKQPSAS-----CIVDPEESDERDADRSTSFMLVGYMASLGQ 186
Query: 199 IVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
+ EV + S +L D + + +V++
Sbjct: 187 VTEVW---TEGSLSSTDLSKLLEKCTDVASKTRLVANNVLAE 225
>gi|327306900|ref|XP_003238141.1| 3' exoribonuclease [Trichophyton rubrum CBS 118892]
gi|326458397|gb|EGD83850.1| 3' exoribonuclease [Trichophyton rubrum CBS 118892]
Length = 415
Score = 46.0 bits (107), Expect = 0.004, Method: Composition-based stats.
Identities = 11/40 (27%), Positives = 18/40 (45%)
Query: 5 GRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE 44
GR + Q R S++ + G +V+ GDT + E
Sbjct: 56 GRTDTQFRPASVSTGSLTHTNGGAVVRMGDTAAVCGVRAE 95
>gi|84998310|ref|XP_953876.1| exosome ribonuclease PH (Rrp42 ) [Theileria annulata]
gi|65304873|emb|CAI73198.1| exosome ribonuclease PH (Rrp42 homologue), putative [Theileria
annulata]
Length = 268
Score = 46.0 bits (107), Expect = 0.005, Method: Composition-based stats.
Identities = 15/41 (36%), Positives = 23/41 (56%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTA 41
+RL GR+ Q+ +++ +S A GS V FGD + TT
Sbjct: 12 LRLDGRKFEQLYSLNIIPNISSIAHGSSQVTFGDNIVQTTV 52
>gi|68483592|ref|XP_714249.1| potential exosome component Rrp45p [Candida albicans SC5314]
gi|68483865|ref|XP_714111.1| potential exosome component Rrp45p [Candida albicans SC5314]
gi|46435645|gb|EAK95022.1| potential exosome component Rrp45p [Candida albicans SC5314]
gi|46435802|gb|EAK95176.1| potential exosome component Rrp45p [Candida albicans SC5314]
gi|238883782|gb|EEQ47420.1| conserved hypothetical protein [Candida albicans WO-1]
Length = 337
Score = 46.0 bits (107), Expect = 0.005, Method: Composition-based stats.
Identities = 18/95 (18%), Positives = 31/95 (32%), Gaps = 2/95 (2%)
Query: 6 RQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGM 65
R+ NQ R I + ++Y GS + G T ++ T P R +
Sbjct: 33 RKFNQFRPIDIKLSNTRY--GSVELSLGKTKVMVNITSRITEPYQDRPFEGIMTINCEIP 90
Query: 66 LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRS 100
+ + + I R + RA+R
Sbjct: 91 NHIKLQSNDTTNNNNDNEDEFINLINRALDRAIRR 125
>gi|167947925|ref|ZP_02534999.1| polynucleotide phosphorylase/polyadenylase [Endoriftia persephone
'Hot96_1+Hot96_2']
Length = 99
Score = 46.0 bits (107), Expect = 0.005, Method: Composition-based stats.
Identities = 6/38 (15%), Positives = 14/38 (36%)
Query: 204 GSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
+ +++ L AK+ ++ VIS+
Sbjct: 1 MDIKINGITKEIMEIALEQAKEGRLHILDEMNRVISSH 38
>gi|195020230|ref|XP_001985151.1| GH16904 [Drosophila grimshawi]
gi|193898633|gb|EDV97499.1| GH16904 [Drosophila grimshawi]
Length = 331
Score = 45.6 bits (106), Expect = 0.005, Method: Composition-based stats.
Identities = 35/252 (13%), Positives = 78/252 (30%), Gaps = 22/252 (8%)
Query: 7 QENQM----REISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAE 62
+ ++ R + V GS +++G+T ++ P + + G +
Sbjct: 37 KPTELVVAPRSTFIRAGVLTTVRGSAYMEYGNTKMMAIV----APPRELVRSSAGRVNMG 92
Query: 63 YGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQAD 122
+ E S + + + M+ +AL +V + + Q+ I ++ D
Sbjct: 93 VLNCYVNFAAFASGELASLPEREKH--LGSMLTKALEPLVCRNEFLNFQLDIRVLILDDD 150
Query: 123 GGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKG----HVAAISCGMLCGYPIVDLD 178
G + AI VAL +C D A + + L
Sbjct: 151 GCLLSTAINCCGVALVECGISTYDLIAASTACIYRDQVFLNPSAKVEELLWQHRGGNALL 210
Query: 179 YGEDSTIDVDANFVMTDSGHIVEVQGSAER--------ATFSQDHFFAMLNLAKDRIADL 230
S+ + + + G ++ + + + +L+ L
Sbjct: 211 GSSSSSKKDEKAATIQEYGLLINASMDSFEQLAQCQQCGYLKPETYVRLLDYTLQINKSL 270
Query: 231 IKLQKDVISNEV 242
+L K V++ V
Sbjct: 271 RELIKRVLTERV 282
>gi|71033555|ref|XP_766419.1| hypothetical protein [Theileria parva strain Muguga]
gi|68353376|gb|EAN34136.1| hypothetical protein TP01_0898 [Theileria parva]
Length = 88
Score = 45.6 bits (106), Expect = 0.006, Method: Composition-based stats.
Identities = 14/41 (34%), Positives = 23/41 (56%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTA 41
+RL GR+ ++ +++ +S A GS V FGD + TT
Sbjct: 12 LRLDGRKLDEQYSLNIIPNISSIAHGSSQVTFGDNIVQTTV 52
>gi|156086782|ref|XP_001610798.1| hypothetical protein [Babesia bovis T2Bo]
gi|154798051|gb|EDO07230.1| conserved hypothetical protein [Babesia bovis]
Length = 267
Score = 45.6 bits (106), Expect = 0.006, Method: Composition-based stats.
Identities = 15/40 (37%), Positives = 21/40 (52%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTA 41
RL GR+ + +I + VS A GS V DT ++TT
Sbjct: 13 RLDGRRLDDNPKILIEPNVSTGAHGSAKVILDDTVVITTI 52
>gi|148692299|gb|EDL24246.1| exosome component 5, isoform CRA_a [Mus musculus]
Length = 128
Score = 45.6 bits (106), Expect = 0.006, Method: Composition-based stats.
Identities = 8/38 (21%), Positives = 15/38 (39%)
Query: 11 MREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVP 48
+R + + + +GS GDT +L +V
Sbjct: 28 LRHFACEQNLLSRPDGSASFLQGDTSVLAGVYGPAEVK 65
>gi|302925936|ref|XP_003054194.1| predicted protein [Nectria haematococca mpVI 77-13-4]
gi|256735135|gb|EEU48481.1| predicted protein [Nectria haematococca mpVI 77-13-4]
Length = 250
Score = 45.2 bits (105), Expect = 0.007, Method: Composition-based stats.
Identities = 23/217 (10%), Positives = 55/217 (25%), Gaps = 15/217 (6%)
Query: 15 SLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGNRV 74
+ A+GS +G ++ + N + G R
Sbjct: 8 TAELSHLPKADGSATFSYGGYTIVAAVNGPVEAQRRDENAFEALVDVIVRPAAGVGGTRE 67
Query: 75 KREAVSGRQGGRSQEIQRMIGRA-LRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGA 133
++ + R R R ++ + ++ + A+ +
Sbjct: 68 RQLESILQAALRQLIPVRDYPRCVIQITLQVAETPENAYVNTKLSQSQLNLPIIPALLHS 127
Query: 134 -WVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFV 192
++L ++ L+ + IVD E
Sbjct: 128 AILSLLSAAISLKAIGAATVLAIPEE----------EGKDIIVDPTAVEVDHAKSVHALG 177
Query: 193 MTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIAD 229
T ++ + +FS D + +L L + +
Sbjct: 178 FTSHDELLLAES---EGSFSPDEWAKVLQLGQRICCE 211
>gi|268570481|ref|XP_002640755.1| C. briggsae CBR-ARX-4 protein [Caenorhabditis briggsae]
gi|187040399|emb|CAP20857.1| CBR-ARX-4 protein [Caenorhabditis briggsae AF16]
Length = 539
Score = 45.2 bits (105), Expect = 0.007, Method: Composition-based stats.
Identities = 11/51 (21%), Positives = 19/51 (37%)
Query: 6 RQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKH 56
R R +S+ V +GS +FG+T +L + W +
Sbjct: 31 RSSTAFRPLSVKCGVFGAQDGSGYAEFGNTRVLAQILGPDGDGKWEEDHAK 81
>gi|325116021|emb|CBZ51575.1| GF22565, related [Neospora caninum Liverpool]
Length = 552
Score = 45.2 bits (105), Expect = 0.007, Method: Composition-based stats.
Identities = 12/72 (16%), Positives = 25/72 (34%), Gaps = 3/72 (4%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+R+ GR + R + ++ + + G + G T L+ T + G I+
Sbjct: 21 LRVDGRSPDHFRRLQISF---RRSNGHAEIALGRTRCLSQVTASPFALLPTDRASDGEIS 77
Query: 61 AEYGMLPRSTGN 72
+ P
Sbjct: 78 FRVALSPSIPPT 89
>gi|46108418|ref|XP_381267.1| hypothetical protein FG01091.1 [Gibberella zeae PH-1]
Length = 250
Score = 45.2 bits (105), Expect = 0.007, Method: Composition-based stats.
Identities = 25/220 (11%), Positives = 56/220 (25%), Gaps = 21/220 (9%)
Query: 15 SLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGNRV 74
+ + ++GS +G ++ + N + G R
Sbjct: 8 TAEISLLAKSDGSATFSYGGYAVIAAVNGPVEAQRRDENAFEALVDVIVRPAAGVGGTRE 67
Query: 75 KREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAA-ITGA 133
++ + ALR ++ + I I V + A I A
Sbjct: 68 RQLESIMQA-------------ALRQLIPVRDYPRSVIQITLQVAETPENAYVNAKIVQA 114
Query: 134 WVALHDCLQHMEDCSNKFQLSQVLKGHVAAIS----CGMLCGYPIVDLDYGEDSTIDVDA 189
+ L + + + + A + IVD +
Sbjct: 115 QLNLPIIPALLHSAILGLLSAAIPLKTIGAATLIAVPEEEGKDIIVDPSAVDIDRAKSVH 174
Query: 190 NFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIAD 229
T ++ + F+ D + +L L + +
Sbjct: 175 ALAFTSHDELLLSES---EGAFTPDEWTKVLQLGQRVCCE 211
>gi|70948509|ref|XP_743754.1| exosome complex exonuclease [Plasmodium chabaudi chabaudi]
gi|56523406|emb|CAH76566.1| exosome complex exonuclease, putative [Plasmodium chabaudi
chabaudi]
Length = 434
Score = 44.8 bits (104), Expect = 0.009, Method: Composition-based stats.
Identities = 12/134 (8%), Positives = 39/134 (29%), Gaps = 2/134 (1%)
Query: 109 SRQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGM 168
+ + + + +++ + V +
Sbjct: 65 ENDGNLYDSCYLSAYSALVHFRNNSVNIDNAGNVIIDEEEVNYSSLSVHNSPILTTFAYF 124
Query: 169 LCGYPIV-DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRI 227
+ D E+ + + + +G+++ + S D + LAK R+
Sbjct: 125 NFEEICLIDPSSYEEEFMSSKLSIAINKNGNLISILKPG-GLPISYDKILHGIELAKKRV 183
Query: 228 ADLIKLQKDVISNE 241
++K+ +D + +
Sbjct: 184 KSILKILEDALKED 197
>gi|154337667|ref|XP_001565066.1| exosome complex exonuclease RRP45 homolog [Leishmania braziliensis
MHOM/BR/75/M2904]
gi|134062106|emb|CAM45222.1| putative exosome complex exonuclease RRP45 homolog [Leishmania
braziliensis MHOM/BR/75/M2904]
Length = 363
Score = 44.8 bits (104), Expect = 0.009, Method: Composition-based stats.
Identities = 34/241 (14%), Positives = 68/241 (28%), Gaps = 19/241 (7%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+R R+ NQ+R + + + VK G+T T + + P R +
Sbjct: 30 LRPDQREANQLRVVEINFPLLSRDV--VQVKCGNTVATATVSCDLVEPSPYRPKHGFFEV 87
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
+L R + + + G L + G R ID +VI
Sbjct: 88 HARQLL----HERDPLDQSKEIKRISMYLTRLFTGSVLETEGLCIIPGRRVWSIDAEVII 143
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
+ + V + + + V H L P+
Sbjct: 144 MNNDGNVQDVGQWAVMAALQHVRRPELTIRGDDVIVHPPHEREPVPLPLHHIPLSFTFAV 203
Query: 181 EDSTIDVDANFV-------------MTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRI 227
+ +V + ++ E G + +S D +++ A + +
Sbjct: 204 CANPQEVQLAVRASTLRRGQTPRAGASSDANVDEDDGEEKELGWSSDALQVVVDPALEEV 263
Query: 228 A 228
A
Sbjct: 264 A 264
>gi|195128573|ref|XP_002008737.1| GI13661 [Drosophila mojavensis]
gi|193920346|gb|EDW19213.1| GI13661 [Drosophila mojavensis]
Length = 329
Score = 44.8 bits (104), Expect = 0.010, Method: Composition-based stats.
Identities = 39/245 (15%), Positives = 76/245 (31%), Gaps = 24/245 (9%)
Query: 12 REISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEK-VPMWIRNTKHGWITAEYGMLPRST 70
R + V GS +++G+T L+ + V G I +T
Sbjct: 46 RSTFIRAGVLTTVRGSAYMEYGNTKLMAIVAPPRELVRSSAHRVSMGVINCYVNFAAFAT 105
Query: 71 GNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAI 130
G+ R + + M+ +AL +V + + Q+ I ++ DG + AI
Sbjct: 106 GDLESVP-------EREKHLGSMLTKALEPLVCRNEFLNFQLDIRVLILDDDGCLLSTAI 158
Query: 131 TGAWVALHDCLQHMEDCSNKFQLSQ----VLKGHVAAISCGMLCGY---------PIVDL 177
VAL +C D V A + + +
Sbjct: 159 NCCGVALIECGISTYDLITASTACIYRGYVFINPTAKVEELLWQHRGGNALLGSSSASSV 218
Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
+ + N M + + + Q + + +L+ + L L + V
Sbjct: 219 KDNDIQEHGLLINASMDNFEQLAQCQQCGY---LKPETYVRLLDYTLEINKSLRHLIRRV 275
Query: 238 ISNEV 242
+S+ V
Sbjct: 276 LSDRV 280
>gi|145521242|ref|XP_001446476.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124413954|emb|CAK79079.1| unnamed protein product [Paramecium tetraurelia]
Length = 984
Score = 44.8 bits (104), Expect = 0.010, Method: Composition-based stats.
Identities = 21/159 (13%), Positives = 43/159 (27%), Gaps = 11/159 (6%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R+ GR Q+R I G+ + G+T + ++ G++
Sbjct: 785 RIDGRDPLQLRMIQSHFG--PQITGAVELSLGETSV-------SRMSPNPIRPSEGFLKF 835
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
+ + + + E +AL + G ID +V
Sbjct: 836 HLDLQVLRDTGYMHNPIKLDMEIEKYIEKVIKGSKALDTESLCILSGKNVWSIDVNVALI 895
Query: 122 DGG--TRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLK 158
+ A + + S + +V K
Sbjct: 896 NNDGNLLDAMYLCCIFSQQHFRRPQVSVSLQGVKVEVEK 934
>gi|213024825|ref|ZP_03339272.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Typhi str. 404ty]
Length = 208
Score = 44.8 bits (104), Expect = 0.011, Method: Composition-based stats.
Identities = 6/39 (15%), Positives = 16/39 (41%)
Query: 201 EVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
+Q + +++ LN AK ++ + + I+
Sbjct: 1 ALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQAIN 39
>gi|270010733|gb|EFA07181.1| hypothetical protein TcasGA2_TC010182 [Tribolium castaneum]
Length = 175
Score = 44.8 bits (104), Expect = 0.011, Method: Composition-based stats.
Identities = 12/95 (12%), Positives = 25/95 (26%)
Query: 15 SLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGNRV 74
S + +GS L +T ++ + + + A + G +
Sbjct: 7 SCKLGILSRPDGSVLFSQDETTVVAGVYGPVESKANKALVEKACVEAHFRPKSGLPGVKD 66
Query: 75 KREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGS 109
+ R + M R VV +
Sbjct: 67 RLNESIIRNVCEAAIATAMYPRTSVVVVIQEMQNN 101
>gi|146415666|ref|XP_001483803.1| hypothetical protein PGUG_04533 [Meyerozyma guilliermondii ATCC
6260]
Length = 314
Score = 44.8 bits (104), Expect = 0.011, Method: Composition-based stats.
Identities = 29/259 (11%), Positives = 68/259 (26%), Gaps = 26/259 (10%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKF--G-------DTHLLTTA--TLEEKVPM 49
+R R + Q R + + GS ++ G + ++ TA + + +
Sbjct: 50 IRPDRRADYQFRPLEAKTGFLPGSNGSARIRLMDGSECIVSVKSKVVITALESALIECDV 109
Query: 50 WIRNTKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGS 109
I + T + + + + +V AL
Sbjct: 110 DISGHRDDSNYVSNLKYNLET-----VLLENFPTSCLNLTSKYSYKLFIDCIVISHALYP 164
Query: 110 RQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKF--QLSQVLKGHVAAISCG 167
++ + I+ A + D ++ +I G
Sbjct: 165 LGLMSLACYLALKTSRLPLLISEVNDADIEEQPTFSDDWDEARNLAEMQDFHPPISIVAG 224
Query: 168 MLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEV--------QGSAERATFSQDHFFAM 219
++ + D E ++ + I V + S
Sbjct: 225 LIGSNILFDPSAEEVQVLENGLLLTWYNGKVISPVSNVNLATNSKNTNFKGLSPHLITKS 284
Query: 220 LNLAKDRIADLIKLQKDVI 238
+++A+ D++K VI
Sbjct: 285 ISMAQKYCGDIVKALDSVI 303
>gi|171694984|ref|XP_001912416.1| hypothetical protein [Podospora anserina S mat+]
gi|170947734|emb|CAP59897.1| unnamed protein product [Podospora anserina S mat+]
Length = 262
Score = 44.4 bits (103), Expect = 0.012, Method: Composition-based stats.
Identities = 21/211 (9%), Positives = 51/211 (24%), Gaps = 14/211 (6%)
Query: 19 RVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGNRVKREA 78
V A+GS + + + + + G R +
Sbjct: 21 GVLPRADGSAKYSHAGYTVTASVNGPIEAQRRDEHPYEAHVDVIVRPAAGVGGTRERHLE 80
Query: 79 VSGRQGGRSQEIQRMIGRALRSVV-DLSALGSRQIIID-CDVIQADGGTRTAAITGAWVA 136
+ + + R+L +V + + + A A +A
Sbjct: 81 SILQSSLSQIILVKNFPRSLIQIVLQVEDSPENDYVNTKLVQASLNFSIMPALFQTAVLA 140
Query: 137 LHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDS 196
L + + ++ V + +VD + T
Sbjct: 141 LLSAGVPIRATATATAVAIVPQ---------DGTKRSVVDPSPRDVEIAQSVHVLAFTSH 191
Query: 197 GHIVEVQGSAERATFSQDHFFAMLNLAKDRI 227
++ + + F+ + + AKD
Sbjct: 192 DELLLAESEGD---FTVKEWDDVYETAKDVC 219
>gi|328850724|gb|EGF99885.1| hypothetical protein MELLADRAFT_68277 [Melampsora larici-populina
98AG31]
Length = 252
Score = 44.4 bits (103), Expect = 0.012, Method: Composition-based stats.
Identities = 10/32 (31%), Positives = 14/32 (43%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKF 32
+R GR R I++ VS A GS +
Sbjct: 25 LRADGRPLLSFRPINIITNVSAQANGSARCQL 56
>gi|258574161|ref|XP_002541262.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
gi|237901528|gb|EEP75929.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
Length = 282
Score = 44.4 bits (103), Expect = 0.012, Method: Composition-based stats.
Identities = 35/255 (13%), Positives = 69/255 (27%), Gaps = 28/255 (10%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWI---RNTKHG 57
+RL GR +Q R ++LT ++G ++ + E P
Sbjct: 23 VRLDGRPLDQFRSLNLTFGD----------EYG---VIVRISAEVTAPRPERESDGIFTV 69
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
I +P R + + + + D
Sbjct: 70 SIELNDMAIPGFETGRQSDSETQLSRTLDKIVRRSNALDTESLCIAKGLSC-WNVRADVH 128
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
++ ADGG AL + + V +
Sbjct: 129 IVDADGGLVDICCLAIMAALLHFRLPESTVRDGKVTVYSAEEKVPVPLNLTKVPLSVTFN 188
Query: 178 DYGEDSTIDVDANFV---MTDSGHIVEVQGSAERATFSQDH--------FFAMLNLAKDR 226
Y E T +DA +++ I+ + + E A +S+ A A +
Sbjct: 189 LYDEGKTTLLDATSSEEAVSEGSLIIALDKTGEIALYSKADGTPADPLNMVACSATALAK 248
Query: 227 IADLIKLQKDVISNE 241
+ +L L + + +
Sbjct: 249 VRELNALIQRKLEED 263
>gi|149240693|ref|XP_001526201.1| hypothetical protein LELG_02759 [Lodderomyces elongisporus NRRL
YB-4239]
gi|146450324|gb|EDK44580.1| hypothetical protein LELG_02759 [Lodderomyces elongisporus NRRL
YB-4239]
Length = 341
Score = 44.4 bits (103), Expect = 0.012, Method: Composition-based stats.
Identities = 28/198 (14%), Positives = 59/198 (29%), Gaps = 3/198 (1%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+RL+GR Q+R+IS+ +S G V FG T L + P + G
Sbjct: 23 LRLNGRSLMQLRDISI--YLSPTEYGYVEVSFGSTKLSVRISASITKP-YEDRPFEGIFV 79
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
+ P ++ + + S+ I++ I R+ ++ + + + +
Sbjct: 80 INSEISPMASLKFDTTRSQQQDEVLISRIIEKSIRRSNALDLENLCIIAGEQCWEITADL 139
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
I A L H + ++ ++
Sbjct: 140 NFWNYDGGMIDIGCFATMLALSHFKKPDVSITHGGFGGSGNGGVNGVIIHDVNERQPVGL 199
Query: 181 EDSTIDVDANFVMTDSGH 198
I + + + G
Sbjct: 200 SILHIPICLTYSFFNLGS 217
>gi|255029855|ref|ZP_05301806.1| polynucleotide phosphorylase/polyadenylase [Listeria
monocytogenes LO28]
Length = 50
Score = 44.4 bits (103), Expect = 0.013, Method: Composition-based stats.
Identities = 12/35 (34%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKV 47
+S+ ++K A G+ L+++GDT +LT A +K
Sbjct: 16 LSVEVGQLAKQASGAALIRYGDTVVLTAAVGSKKP 50
>gi|149237382|ref|XP_001524568.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL
YB-4239]
gi|146452103|gb|EDK46359.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL
YB-4239]
Length = 292
Score = 44.4 bits (103), Expect = 0.014, Method: Composition-based stats.
Identities = 30/268 (11%), Positives = 61/268 (22%), Gaps = 32/268 (11%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+R R +Q R + T + GS ++ D +++ KV
Sbjct: 21 IRPDSRSTHQYRPLEATTSFLPGSNGSARIRLSD-GSECIVSVKSKVV----TYDARINH 75
Query: 61 AEYGMLPRSTGNRVKREA------------VSGRQGGRSQEIQRMIGRALRSVVDLSALG 108
+ G R + R + + +S
Sbjct: 76 NAVELDIDIVGYRDDSNYVANLRYQLSNLLQQNFPHDVLKLTSRYAFKLFIDCIVISHTS 135
Query: 109 SRQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLK---------- 158
+I A T+ + S
Sbjct: 136 YPLSLISFATYLALKLTKLPLLISDVNDEEVAELPTFSDDWDNATSLSQILQEKQIASAD 195
Query: 159 -GHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEV----QGSAERATFSQ 213
++ G++ I D E+ ++ + I + S F +
Sbjct: 196 FQPPVLVTIGVVGSNLIFDPSLEEEQVLENSLIVGFYNGKVITPILNANFSSNNYKGFDK 255
Query: 214 DHFFAMLNLAKDRIADLIKLQKDVISNE 241
L L+ +IK ++ E
Sbjct: 256 SLMIKALTLSNKFCPYIIKALDTLVEQE 283
>gi|131888895|ref|NP_001076540.1| exosome complex exonuclease RRP46 isoform 2 [Danio rerio]
gi|94733275|emb|CAK04296.1| novel protein similar to mouse and human exosome component 5
(EXOSC5) [Danio rerio]
Length = 128
Score = 44.4 bits (103), Expect = 0.014, Method: Composition-based stats.
Identities = 11/74 (14%), Positives = 21/74 (28%)
Query: 11 MREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRST 70
+RE + + +GS GDT +L +V + +
Sbjct: 14 LREYGSEQSLLSRPDGSSTFVQGDTSILAGVYGPAEVKVSKEIYDRATVEVLIQPKMGLP 73
Query: 71 GNRVKREAVSGRQG 84
R + R+
Sbjct: 74 SVRERAREQCVRET 87
>gi|310798246|gb|EFQ33139.1| 3' exoribonuclease [Glomerella graminicola M1.001]
Length = 291
Score = 44.4 bits (103), Expect = 0.015, Method: Composition-based stats.
Identities = 21/124 (16%), Positives = 39/124 (31%), Gaps = 18/124 (14%)
Query: 6 RQENQMREISLTRRVSKYAEGSCLVKFG----------DT---HLLTTATLEEKVPMWIR 52
R N +R + L V+ A GS ++ T L+ T +P
Sbjct: 31 RPANGIRGLFLKTGVTPTASGSAYMEIEPPHSHVKSKSKTNGMKLICTVHGPRSLPRSAP 90
Query: 53 NTKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQI 112
+ + ++ P +T R S ++I + ALR V+ +
Sbjct: 91 FSPYLVLSTHVKYAPFATRQRRSYLRDS-----SERDIGVHLDTALRGVIIADRWPKSGV 145
Query: 113 IIDC 116
+
Sbjct: 146 DVIV 149
>gi|73969674|ref|XP_865499.1| PREDICTED: similar to polyribonucleotide nucleotidyltransferase 1
isoform 2 [Canis familiaris]
Length = 209
Score = 44.4 bits (103), Expect = 0.015, Method: Composition-based stats.
Identities = 33/191 (17%), Positives = 58/191 (30%), Gaps = 24/191 (12%)
Query: 38 LTTA---TLEEKVPMWIRNTKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMI 94
+ TA T + A G +P + R + R+I
Sbjct: 1 MVTAVSKTKPSPSQFMPLVVDYRQKAAAAGRIPTNYLRR------EVGSSDKEVLTSRVI 54
Query: 95 GRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLS 154
R++R + Q++ + + AI GA VA
Sbjct: 55 DRSIRPLFPAGYFYDTQVLCNLLAVDGVNEPDVLAINGASVA-------------LSLSD 101
Query: 155 QVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQD 214
G + A+ GM+ G +V+ E S+ ++ IV ++ SAE Q
Sbjct: 102 IPWNGPIGAVRIGMIDGECVVNPTRKEMSSSTLNLVVAGAPKSQIVMMEASAEN--ILQQ 159
Query: 215 HFFAMLNLAKD 225
F + +
Sbjct: 160 DFCHAIKVGVK 170
>gi|47218202|emb|CAF97066.1| unnamed protein product [Tetraodon nigroviridis]
Length = 239
Score = 44.4 bits (103), Expect = 0.015, Method: Composition-based stats.
Identities = 7/54 (12%), Positives = 17/54 (31%), Gaps = 1/54 (1%)
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
+D T+ G I +Q + + A +++ + I+
Sbjct: 1 MDFKLAGTNKG-ITALQADVKIPGLPLKLVMEAIQQATVAKREILAIMNKCIAK 53
>gi|82793240|ref|XP_727962.1| exonuclease RRP41 [Plasmodium yoelii yoelii str. 17XNL]
gi|23484066|gb|EAA19527.1| exonuclease RRP41, putative [Plasmodium yoelii yoelii]
Length = 218
Score = 44.1 bits (102), Expect = 0.015, Method: Composition-based stats.
Identities = 35/222 (15%), Positives = 77/222 (34%), Gaps = 22/222 (9%)
Query: 19 RVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGNRVKREA 78
+S A+G + G+T +L+ ++ I + + P + ++ K++
Sbjct: 5 NISNDADGFAFYEIGNTKILSYIQGPTELKKTDD---KCSIKCDVFLSPFNVYDKRKKKT 61
Query: 79 VSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVALH 138
+ EI I +++ L + +I I +I+ DGG + AAI +AL
Sbjct: 62 KDN----ITNEISAYIRNICENIILLDLYKNSEINIFLYIIERDGGIKHAAINTCILALI 117
Query: 139 DCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGH 198
D + A + + +S + ++
Sbjct: 118 DAGIA------------IKYFISACSVLYLQNKIIVDGNQLEINSGSPELTMVIELNTHK 165
Query: 199 IVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
I+ ++ AE D F +M+ D ++ ++ K +
Sbjct: 166 IILLEFDAE---IPIDIFESMVQTCIDSCINIGRVMKLTVKE 204
>gi|325116874|emb|CBZ52427.1| putative exosome complex exonuclease [Neospora caninum Liverpool]
Length = 294
Score = 44.1 bits (102), Expect = 0.017, Method: Composition-based stats.
Identities = 22/242 (9%), Positives = 60/242 (24%), Gaps = 2/242 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+R GR +R + S +V+ + +L +++ P + ++T
Sbjct: 35 VREDGRACIDVRPSQVDTFALPKCSASSIVRSSENTVLCGVSMQLARPTNAPDEGEVFVT 94
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
+ G R G G S + + + +
Sbjct: 95 VDCSAALGVDGARGAAFDSVGIGEGSSSTSLQALVGDMVLSSVDKKKLCLVPGKLMWKVF 154
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML-CGYPIVDLDY 179
D A + + + ++ G + Y
Sbjct: 155 VDCMVLKAGGCLLDAVSLSVHAALRTTTEVAGEPFPAEDVPIIVTVGEIANRYVWDMTSN 214
Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
E + V V +Q + ++ ++ ++ + ++
Sbjct: 215 EESACTGRLLVAVSPREHKCVGIQKLG-ASLVDISTLPTVMVNSQRVCREIFERLDRQVA 273
Query: 240 NE 241
++
Sbjct: 274 SQ 275
>gi|322696851|gb|EFY88637.1| hypothetical protein MAC_05255 [Metarhizium acridum CQMa 102]
Length = 271
Score = 44.1 bits (102), Expect = 0.017, Method: Composition-based stats.
Identities = 25/215 (11%), Positives = 56/215 (26%), Gaps = 11/215 (5%)
Query: 21 SKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGNRVKREAVS 80
A+GS + + + P N I G
Sbjct: 14 LPNADGSATFSYCGYVVTAAVNGPIEAPRRDENPFEALIDVVVRPAAGVGGKDRPFHLNL 73
Query: 81 G----RQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAA--ITGAW 134
G ++++ ++ ALR ++ + I + +++A +
Sbjct: 74 QSLIIWPGTAERQLESILQAALRQLIPIRNFPRCMIQVTLQIMEAPENAYQNTKLLQAQS 133
Query: 135 VALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML--CGYPIVDLDYGEDSTIDVDANFV 192
+ LK A + + G I+D E +
Sbjct: 134 NLAIIPALFHAAILGLLTAAVPLKTIATATTLAIPAGSGALIIDPSPEESAQARSLHALA 193
Query: 193 MTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRI 227
T ++ + S +FS + + +L +
Sbjct: 194 FTSHDELLLAESSG---SFSIEDWDRVLETGQRVC 225
>gi|260584869|ref|ZP_05852614.1| polyribonucleotide nucleotidyltransferase [Granulicatella elegans
ATCC 700633]
gi|260157526|gb|EEW92597.1| polyribonucleotide nucleotidyltransferase [Granulicatella elegans
ATCC 700633]
Length = 51
Score = 44.1 bits (102), Expect = 0.017, Method: Composition-based stats.
Identities = 12/37 (32%), Positives = 25/37 (67%), Gaps = 1/37 (2%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKV 47
RE+ + V+K A G+ +V++G++ +LT A + +K+
Sbjct: 13 RELIVETGQVAKQANGAVVVRYGESTVLTAAVMSKKM 49
>gi|302306331|ref|NP_982576.2| AAR035Cp [Ashbya gossypii ATCC 10895]
gi|299788466|gb|AAS50400.2| AAR035Cp [Ashbya gossypii ATCC 10895]
Length = 214
Score = 44.1 bits (102), Expect = 0.018, Method: Composition-based stats.
Identities = 26/224 (11%), Positives = 54/224 (24%), Gaps = 21/224 (9%)
Query: 19 RVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGNRVKREA 78
+ + +GS + + + +H + R K
Sbjct: 4 GILSHVDGSSKFSTAAASAICGVSGPIEPKARQEIPQHLALDVIVRPAAGPPTTREKLLE 63
Query: 79 VSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVALH 138
R + VV+ + I V+++ G + A A +
Sbjct: 64 DKVRAT-------------ITPVVETFLHPRQLCQITLQVLKSVGQHEHMELAVALNAAY 110
Query: 139 DCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGH 198
L + +A + G L P S + G
Sbjct: 111 LALLDAGVPLRAVLSAV----SIAVSTEGELTQNPSPAELQDARSVFTAAFSVA---DGV 163
Query: 199 IVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNEV 242
+ TF + +L LA+ L + + ++
Sbjct: 164 NTLLLLDGN-GTFEESTVSKVLELAEKECVRLAGELRHAVKEKL 206
>gi|320166868|gb|EFW43767.1| opa-interacting protein 2 [Capsaspora owczarzaki ATCC 30864]
Length = 269
Score = 44.1 bits (102), Expect = 0.019, Method: Composition-based stats.
Identities = 35/244 (14%), Positives = 63/244 (25%), Gaps = 23/244 (9%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+R GR + R+ SL+ A S TAT
Sbjct: 41 LRPDGRGLERFRDTSLSINPLATAHASS-----------TATAPSVPAPTTPLKSQSAQA 89
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
P G R + + V L G+ ++
Sbjct: 90 GMAESNPADAGARGIVDLNELCITRGELCWCLYVD-----AVCLDDAGNSTDAALLAIVG 144
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
A A+T + N QL+ A S + + D
Sbjct: 145 ALHALVLPAVTLDAASGKPGFNP---SGNSTQLTLPATPFAATFSLFDGNAFTLADPTAE 201
Query: 181 EDSTIDVDANF---VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
E++ V +++ + V S ++ A +RI L L +
Sbjct: 202 EEAMQSGAVTIVADVSSENPTLWTVHKPG-GTPLSATALRQCISQAVERIKTLDALLQAE 260
Query: 238 ISNE 241
++++
Sbjct: 261 LASQ 264
>gi|322828940|gb|EFZ32541.1| exosome-associated protein 4, putative [Trypanosoma cruzi]
Length = 259
Score = 43.7 bits (101), Expect = 0.020, Method: Composition-based stats.
Identities = 10/53 (18%), Positives = 20/53 (37%), Gaps = 1/53 (1%)
Query: 2 RLSGR-QENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRN 53
R GR + +R + V S V+ G+T ++ +++ R
Sbjct: 33 RNGGREAPDGVRYPHIALDVLGQCHSSACVELGNTRVICAVHHPQQLVDEYRG 85
>gi|198466492|ref|XP_001354017.2| GA20773 [Drosophila pseudoobscura pseudoobscura]
gi|198150625|gb|EAL29754.2| GA20773 [Drosophila pseudoobscura pseudoobscura]
Length = 328
Score = 43.7 bits (101), Expect = 0.022, Method: Composition-based stats.
Identities = 28/145 (19%), Positives = 48/145 (33%), Gaps = 8/145 (5%)
Query: 16 LTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPM-WIRNTKHGWITAEYGMLPRSTGNRV 74
L V GS +++G+T ++ ++ R G I +TG
Sbjct: 49 LRAGVLTTVRGSAYMEYGNTKVMAIVAPPHEMMRATARRMNMGVINCFVNFAAFATGELE 108
Query: 75 KREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAW 134
R + + M+ +AL VV + + Q+ I ++ DG + AI
Sbjct: 109 SVP-------EREKHLGSMLSKALEPVVCRTEFLNFQLDIRVLILDDDGCLLSTAINCCG 161
Query: 135 VALHDCLQHMEDCSNKFQLSQVLKG 159
VAL +C D
Sbjct: 162 VALVECGISTYDLVTASTACIYRDN 186
>gi|213423108|ref|ZP_03356125.1| hypothetical protein Salmonentericaenterica_37027 [Salmonella
enterica subsp. enterica serovar Typhi str. E01-6750]
Length = 34
Score = 43.7 bits (101), Expect = 0.022, Method: Composition-based stats.
Identities = 16/34 (47%), Positives = 21/34 (61%)
Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAML 220
D N VMT+ G I+EVQG+AE FS + +L
Sbjct: 1 TDMNVVMTEDGRIIEVQGTAEGEPFSHEELLTLL 34
>gi|167396187|ref|XP_001741945.1| hypothetical protein [Entamoeba dispar SAW760]
gi|165893254|gb|EDR21576.1| hypothetical protein, conserved [Entamoeba dispar SAW760]
Length = 223
Score = 43.7 bits (101), Expect = 0.022, Method: Composition-based stats.
Identities = 35/241 (14%), Positives = 70/241 (29%), Gaps = 27/241 (11%)
Query: 4 SGRQENQ---MREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
R + +R IS R VS ++G + K G + +++ P N +
Sbjct: 4 DKRTIIESGKIRSISYVRDVSSKSDGCYMFKQGKSCIISGVNAPRDCPKREANPDRAVVK 63
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
E R + + + ++S V+ + + + +V
Sbjct: 64 VEVY----------------ERCSSFDSQRRTELEEFIKSGVEWTVISEQYPNGLINVCN 107
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
+ A L + + ++ G A IV
Sbjct: 108 QIVKDDGSIEAVTMNAAMCALL-----FSGVDMKGIVVGMCVAGKIDNNGTIEIVIDPDD 162
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
S T G IV ++ + S D ++++K ++K K VI
Sbjct: 163 SISYKWKLFTIWDTIKGEIVAMKMKGK---CSDDQLKMSMDISKKNAVKMVKAIKMVIEK 219
Query: 241 E 241
+
Sbjct: 220 Q 220
>gi|237843665|ref|XP_002371130.1| exosome complex exonuclease, putative [Toxoplasma gondii ME49]
gi|211968794|gb|EEB03990.1| exosome complex exonuclease, putative [Toxoplasma gondii ME49]
Length = 447
Score = 43.7 bits (101), Expect = 0.023, Method: Composition-based stats.
Identities = 21/110 (19%), Positives = 41/110 (37%), Gaps = 13/110 (11%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+R+ GR + R + ++ + + G + G T ++ T + G ++
Sbjct: 21 LRVDGRGPDHFRRLQISF---RQSNGYAEIALGHTRCVSQVTARPFALLPTDRASDGELS 77
Query: 61 AEYGMLP----------RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRS 100
+ P A S R+GG+S E++R + R LR
Sbjct: 78 FRVSLSPSIPATSAELAGQVALAASLAADSRRRGGKSSELERELERMLRR 127
>gi|316977092|gb|EFV60250.1| exosome complex exonuclease MTR3 [Trichinella spiralis]
Length = 232
Score = 43.7 bits (101), Expect = 0.023, Method: Composition-based stats.
Identities = 25/150 (16%), Positives = 50/150 (33%), Gaps = 7/150 (4%)
Query: 26 GSCLVKFGDTHLLTTATLEEKVP------MWIRNTKHGWITAEYGMLPRSTGNRVKREAV 79
GS ++ T +L T + M + G +T P + R++R
Sbjct: 36 GSAYIEMNKTKILCTVIGPREAHKSSEDSMGMLLANCGKLTVSVRFAPFAKTPRLQRRRK 95
Query: 80 SGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVALHD 139
+I +A SVV + +I++ ++Q G A++ +AL
Sbjct: 96 EVALSEEQNL-ATLIQQAFDSVVLVERYPKAEIVLIISILQDSGNVLCASLNCCTMALVS 154
Query: 140 CLQHMEDCSNKFQLSQVLKGHVAAISCGML 169
+ D + K ++ G +
Sbjct: 155 AGIEIYDLLTSASETLEDKSDNGTLTIGYM 184
>gi|221484708|gb|EEE23002.1| exosome complex exonuclease, putative [Toxoplasma gondii GT1]
Length = 449
Score = 43.7 bits (101), Expect = 0.023, Method: Composition-based stats.
Identities = 21/110 (19%), Positives = 41/110 (37%), Gaps = 13/110 (11%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+R+ GR + R + ++ + + G + G T ++ T + G ++
Sbjct: 21 LRVDGRGPDHFRRLQISF---RQSNGYAEIALGHTRCVSQVTARPFALLPTDRASDGELS 77
Query: 61 AEYGMLP----------RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRS 100
+ P A S R+GG+S E++R + R LR
Sbjct: 78 FRVSLSPSIPATSAELAGQVALAASLAADSRRRGGKSSELERELERMLRR 127
>gi|71410043|ref|XP_807336.1| exosome-associated protein 4 [Trypanosoma cruzi strain CL Brener]
gi|70871314|gb|EAN85485.1| exosome-associated protein 4, putative [Trypanosoma cruzi]
Length = 229
Score = 43.7 bits (101), Expect = 0.023, Method: Composition-based stats.
Identities = 34/230 (14%), Positives = 63/230 (27%), Gaps = 22/230 (9%)
Query: 2 RLSGR-QENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
R GR + +R + V S V+ G+T ++ +++ R ++
Sbjct: 3 RNGGRETPDGVRYPHIALDVLGQCHSSACVELGNTRVICAVHHPQQLVDEYRGSRGRVAC 62
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
+ + + + VV L + + + +++
Sbjct: 63 TVRRSASAGSHSAGSAQPSVVTPEKDMSL---ALEGVAEEVVILEKIPQLLVEVVVEILA 119
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
DGG A T AL M D + +
Sbjct: 120 EDGGVWDAVATSMSAALVSGGFEMHDL-----------FSACGSALLSDGAVVLDPDAAE 168
Query: 181 EDSTIDVDANFVMTDSGHIVEV--QGSAERATFSQDHFFAMLNLAKDRIA 228
E + VM +SG I QGS E T +++ A
Sbjct: 169 ESNAQASALVCVMLNSGEICYARHQGSCEPGT-----VLELVSSAMKGCL 213
>gi|29351673|gb|AAH49283.1| Pnpt1 protein [Mus musculus]
Length = 235
Score = 43.7 bits (101), Expect = 0.025, Method: Composition-based stats.
Identities = 5/45 (11%), Positives = 14/45 (31%)
Query: 196 SGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
+ I +Q + + A +++++ IS
Sbjct: 3 NKGITALQADIKLPGVPIKIIMEAIQQASVAKKEILQIMNKTISK 47
>gi|270717143|ref|ZP_06223257.1| polyribonucleotide nucleotidyltransferase [Haemophilus influenzae
HK1212]
gi|270315521|gb|EFA27748.1| polyribonucleotide nucleotidyltransferase [Haemophilus influenzae
HK1212]
Length = 82
Score = 43.7 bits (101), Expect = 0.025, Method: Composition-based stats.
Identities = 11/71 (15%), Positives = 24/71 (33%), Gaps = 5/71 (7%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----HGWITAEYGMLPR 68
++L +++ A + + DT + T ++ V + T G +P
Sbjct: 7 VTLETGAIARQATAAVMASMDDTTVFVTVVAKKDVKEGQDFFPLTVNYQERTYAAGKIPG 66
Query: 69 STGNRVKREAV 79
R R +
Sbjct: 67 GFFKREGRPSE 77
>gi|221484017|gb|EEE22321.1| exosome complex exonuclease, putative [Toxoplasma gondii GT1]
gi|221505289|gb|EEE30943.1| exosome complex exonuclease, putative [Toxoplasma gondii VEG]
Length = 291
Score = 43.7 bits (101), Expect = 0.025, Method: Composition-based stats.
Identities = 8/48 (16%), Positives = 19/48 (39%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVP 48
+R GR ++R + S +V+ + +L +++ P
Sbjct: 56 VREDGRACVEVRPSQVETFALPKCSASAIVRSSENTVLCGVSMQLARP 103
>gi|237836521|ref|XP_002367558.1| exosome complex exonuclease, putative [Toxoplasma gondii ME49]
gi|211965222|gb|EEB00418.1| exosome complex exonuclease, putative [Toxoplasma gondii ME49]
Length = 297
Score = 43.7 bits (101), Expect = 0.025, Method: Composition-based stats.
Identities = 8/48 (16%), Positives = 19/48 (39%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVP 48
+R GR ++R + S +V+ + +L +++ P
Sbjct: 62 VREDGRACVEVRPSQVETFALPKCSASAIVRSSENTVLCGVSMQLARP 109
>gi|46116870|ref|XP_384453.1| hypothetical protein FG04277.1 [Gibberella zeae PH-1]
Length = 283
Score = 43.3 bits (100), Expect = 0.026, Method: Composition-based stats.
Identities = 19/120 (15%), Positives = 37/120 (30%), Gaps = 15/120 (12%)
Query: 6 RQENQMREISLTRRVSKYAEGSCLVKFGDTH---------LLTTATLEEKVPMWIRNTKH 56
R N +R L V+ A GS ++ ++ L T +P + H
Sbjct: 31 RAANGIRAQYLKTGVTPSASGSAYLEI-ESQDASGSKGMKLTCTVHGPRSLPRSAPFSPH 89
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
++ P +T R S +++ + ALR + + +
Sbjct: 90 MVLSTHVKYAPFATRQRRGYLRDS-----SERDLSSHLEAALRGAIIADRWPKSGVDVIV 144
>gi|324518003|gb|ADY46978.1| Exosome complex exonuclease RRP43 [Ascaris suum]
Length = 277
Score = 43.3 bits (100), Expect = 0.027, Method: Composition-based stats.
Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
Query: 3 LSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE 44
GR R ISL V++ A GSC+ + G + TA +E
Sbjct: 25 PDGRSIGSFRPISLQMGVTQSAAGSCVSRQGG--AMVTARIE 64
>gi|238583089|ref|XP_002390134.1| hypothetical protein MPER_10647 [Moniliophthora perniciosa FA553]
gi|215453188|gb|EEB91064.1| hypothetical protein MPER_10647 [Moniliophthora perniciosa FA553]
Length = 172
Score = 43.3 bits (100), Expect = 0.029, Method: Composition-based stats.
Identities = 32/148 (21%), Positives = 51/148 (34%), Gaps = 16/148 (10%)
Query: 93 MIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQ 152
+ V+ S QI I V+Q DGG A I +AL + + D
Sbjct: 16 NAEVNIEPVIQTSLYPRSQIDIYVQVLQQDGGVLQACINATTLALANAGIPLLDF----- 70
Query: 153 LSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFS 212
V A++ G+ P++DL E++ + VM SG + V
Sbjct: 71 --------VCAVTGGVHSTSPLLDLTQLEENDLPNVTVAVMPRSGKVTLVSM---ETRLH 119
Query: 213 QDHFFAMLNLAKDRIADLIKLQKDVISN 240
D F + LA + + K +
Sbjct: 120 VDRFEEIFRLAGEAGTVIHGEMKRAVKE 147
>gi|77410282|ref|ZP_00786723.1| polyribonucleotide nucleotidyltransferase [Streptococcus agalactiae
COH1]
gi|77171109|gb|EAO74537.1| polyribonucleotide nucleotidyltransferase [Streptococcus agalactiae
COH1]
Length = 182
Score = 43.3 bits (100), Expect = 0.029, Method: Composition-based stats.
Identities = 11/67 (16%), Positives = 26/67 (38%), Gaps = 3/67 (4%)
Query: 172 YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231
I++ E ++ T I V+ A+ S++ L + + +LI
Sbjct: 6 NFIINPTAQEQEASALELTVAGTKE-AINMVESGAKE--LSEEIMLEALLKGHEAVCELI 62
Query: 232 KLQKDVI 238
Q++++
Sbjct: 63 AFQEEIV 69
>gi|77412776|ref|ZP_00788989.1| polyribonucleotide nucleotidyltransferase [Streptococcus
agalactiae CJB111]
gi|77161173|gb|EAO72271.1| polyribonucleotide nucleotidyltransferase [Streptococcus
agalactiae CJB111]
Length = 87
Score = 43.3 bits (100), Expect = 0.032, Method: Composition-based stats.
Identities = 12/36 (33%), Positives = 24/36 (66%), Gaps = 1/36 (2%)
Query: 13 EISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKV 47
++ + V+K A GS +V++GD+ +LT A + +K+
Sbjct: 21 KLVVETGQVAKQANGSVVVRYGDSTVLTAAVMSKKM 56
>gi|195166781|ref|XP_002024213.1| GL22907 [Drosophila persimilis]
gi|194107568|gb|EDW29611.1| GL22907 [Drosophila persimilis]
Length = 328
Score = 43.3 bits (100), Expect = 0.032, Method: Composition-based stats.
Identities = 28/145 (19%), Positives = 48/145 (33%), Gaps = 8/145 (5%)
Query: 16 LTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPM-WIRNTKHGWITAEYGMLPRSTGNRV 74
L V GS +++G+T ++ ++ R G I +TG
Sbjct: 49 LRAGVLTTVRGSAYMEYGNTKVMAIVAPPHELMRATARRMNMGVINCFVNFAAFATGELE 108
Query: 75 KREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAW 134
R + + M+ +AL VV + + Q+ I ++ DG + AI
Sbjct: 109 SVP-------EREKHLGSMLSKALEPVVCRTEFLNFQLDIRVLILDDDGCLLSTAINCCG 161
Query: 135 VALHDCLQHMEDCSNKFQLSQVLKG 159
VAL +C D
Sbjct: 162 VALVECGISTYDLVTASTACIYRDN 186
>gi|156320322|ref|XP_001618165.1| hypothetical protein NEMVEDRAFT_v1g225439 [Nematostella vectensis]
gi|156197791|gb|EDO26065.1| predicted protein [Nematostella vectensis]
Length = 122
Score = 42.9 bits (99), Expect = 0.042, Method: Composition-based stats.
Identities = 21/93 (22%), Positives = 36/93 (38%), Gaps = 4/93 (4%)
Query: 150 KFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVM-TDSGHIVEVQGSAER 208
LK +V+A + + P++D++Y E+ST + S IV Q +
Sbjct: 20 LINAGIPLKDYVSACTVSFVNDTPLMDINYLEESTGGPQLTLAILPKSDKIVLFQMDSR- 78
Query: 209 ATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
D+ +L LA D+ L I +
Sbjct: 79 --LHMDNMDKVLALAMKGCKDIYVLLHRTILED 109
>gi|71415718|ref|XP_809916.1| exosome-associated protein 4 [Trypanosoma cruzi strain CL Brener]
gi|70874370|gb|EAN88065.1| exosome-associated protein 4, putative [Trypanosoma cruzi]
Length = 229
Score = 42.5 bits (98), Expect = 0.044, Method: Composition-based stats.
Identities = 9/50 (18%), Positives = 19/50 (38%), Gaps = 1/50 (2%)
Query: 5 GR-QENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRN 53
GR + +R + V S V+ G+T ++ +++ R
Sbjct: 6 GRETPDGVRYPHIALDVLGQCHSSACVELGNTRVICAVHHPQQLVDEYRG 55
>gi|37675466|gb|AAQ97229.1| YGR095Cp [Saccharomyces cerevisiae]
Length = 67
Score = 42.5 bits (98), Expect = 0.048, Method: Composition-based stats.
Identities = 7/62 (11%), Positives = 16/62 (25%)
Query: 14 ISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGNR 73
+ + + +GS DT ++ + T + + R
Sbjct: 3 VQAEIGILDHVDGSSEFVSQDTKVICSVTGPIEPKARQELPTQLALEIIVRPAKGVATTR 62
Query: 74 VK 75
K
Sbjct: 63 EK 64
>gi|254583946|ref|XP_002497541.1| ZYRO0F07920p [Zygosaccharomyces rouxii]
gi|238940434|emb|CAR28608.1| ZYRO0F07920p [Zygosaccharomyces rouxii]
Length = 265
Score = 42.5 bits (98), Expect = 0.052, Method: Composition-based stats.
Identities = 7/29 (24%), Positives = 12/29 (41%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLV 30
R GR +Q R + + + GS +
Sbjct: 22 RPDGRLPHQFRPLEVYTDFLPSSNGSSRI 50
>gi|68491283|ref|XP_710552.1| potential exosome component Rrp42p [Candida albicans SC5314]
gi|68491306|ref|XP_710541.1| potential exosome component Rrp42p [Candida albicans SC5314]
gi|46431757|gb|EAK91287.1| potential exosome component Rrp42p [Candida albicans SC5314]
gi|46431769|gb|EAK91298.1| potential exosome component Rrp42p [Candida albicans SC5314]
Length = 330
Score = 42.5 bits (98), Expect = 0.052, Method: Composition-based stats.
Identities = 26/277 (9%), Positives = 65/277 (23%), Gaps = 36/277 (12%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGD-THLLTTATLEEKVPMWIRNTKHGWI 59
+R R +Q R + + GS V+ D + + + + + +
Sbjct: 45 IRPDLRSIHQYRPLVAKTSFLPGSNGSARVRTEDGSECIVSVKSKVVLISEEEEEQQQQG 104
Query: 60 TAEYGMLPRSTGNRVKREA------------VSGRQGGRSQEIQRMIGRALRSVVDLSAL 107
+ G+R + + + + +S
Sbjct: 105 HNLIEVDIDIVGHRDDSNYVANLKFQLTNLLQQNFPFEVLKLTSKYTFKLYIDCIIISHS 164
Query: 108 GSRQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKG-------- 159
+I A TR + +
Sbjct: 165 CYPLSLISIANYLALKTTRLPLLISDVNDEEIAELPTFSDDWENAKLIQDYHLNANTRKG 224
Query: 160 -------HVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGS------- 205
I+ G++ I+D + E+ ++ ++ I + +
Sbjct: 225 GSSTKFQPPIFITIGVIGKNLILDPSFEEEQVLENGLIISFYNNKVITPISNTNFAVNSN 284
Query: 206 -AERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
+ Q L L ++I+ +I +
Sbjct: 285 NSNFKGLDQSLLIQSLTLCNKYCPNIIRALDSLIEED 321
>gi|308161157|gb|EFO63615.1| Exosome complex exonuclease, putative [Giardia lamblia P15]
Length = 315
Score = 42.5 bits (98), Expect = 0.053, Method: Composition-based stats.
Identities = 13/39 (33%), Positives = 23/39 (58%), Gaps = 3/39 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTT 40
R+ GR + R+ISL+ ++ GS LV+ G T ++ +
Sbjct: 16 RIDGRGIAETRDISLSFFTAR---GSVLVEKGKTKVVAS 51
>gi|50550415|ref|XP_502680.1| YALI0D11000p [Yarrowia lipolytica]
gi|49648548|emb|CAG80868.1| YALI0D11000p [Yarrowia lipolytica]
Length = 312
Score = 42.5 bits (98), Expect = 0.053, Method: Composition-based stats.
Identities = 31/252 (12%), Positives = 68/252 (26%), Gaps = 28/252 (11%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKF---GDTHLLTTA------TLEE--KVPM 49
+R R+ NQ R + + GS ++ G+ + A +++E V +
Sbjct: 21 IRPDAREPNQFRPVDAAQNFLPATNGSARIRTSDGGECIVGVKAKVVKNSSVDELIAVEV 80
Query: 50 WIRNTKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGS 109
I + + + T + R + + I + S
Sbjct: 81 DIDDIRDDSPLPKLLSAVLQTLILSSIDTNRLRLTRSNYAFKLHIDALVLSHTSFPLNLV 140
Query: 110 RQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDC---------SNKFQLSQVLKGH 160
I ++A + E+ +N +
Sbjct: 141 SLAIFLALKCTRLPLLVSSANDEEHEEVPVFSDDWEESLALCGGEILANNSGSEAISWTP 200
Query: 161 VAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVE----VQGSAERATFSQDHF 216
S ++ +VD + E+S D+ +G + + ++ S +
Sbjct: 201 PLVFSLAVVGNNILVDPTHEEESVSDLGLIMGWC-NGQVCAPLRIIDLASAGGNVSPEQL 259
Query: 217 FA---MLNLAKD 225
ML D
Sbjct: 260 SQQQSMLEQGID 271
>gi|19112052|ref|NP_595260.1| exosome subunit Rrp46 (predicted) [Schizosaccharomyces pombe 972h-]
gi|29336579|sp|O42894|RRP46_SCHPO RecName: Full=Exosome complex component rrp46; AltName:
Full=Ribosomal RNA-processing protein 46
gi|2956749|emb|CAA17913.1| exosome subunit Rrp46 (predicted) [Schizosaccharomyces pombe]
Length = 226
Score = 42.5 bits (98), Expect = 0.053, Method: Composition-based stats.
Identities = 30/222 (13%), Positives = 65/222 (29%), Gaps = 26/222 (11%)
Query: 18 RRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGNRVKRE 77
+ ++GS K G ++ V + + + K
Sbjct: 4 IGILSRSDGSSEWKQGSARVICGVNGPIDVKIRDERLNKATVEVLVQPVSGVAETLEKMI 63
Query: 78 AVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQAD-GGTRTAAITGAWVA 136
I L + L+ I + +I+ D T A I GA +A
Sbjct: 64 -------------SSRIVGILEDAIFLNTYPRTLIQVSIQIIEEDGTDTLAAVINGAVLA 110
Query: 137 LHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDS 196
L D ++ + + P VD + +I + ++
Sbjct: 111 LLDAGISLK---------YIPCAINCHWKNKITQDEPDVDGTINKLESIITICYSISSEP 161
Query: 197 GHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
++ ++ ++ FF +L A ++ K K+++
Sbjct: 162 AKLIFLE---TAGPIPEEDFFRVLETAPLHAEEVSKKMKELL 200
>gi|238881478|gb|EEQ45116.1| conserved hypothetical protein [Candida albicans WO-1]
Length = 307
Score = 42.5 bits (98), Expect = 0.054, Method: Composition-based stats.
Identities = 26/277 (9%), Positives = 65/277 (23%), Gaps = 36/277 (12%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGD-THLLTTATLEEKVPMWIRNTKHGWI 59
+R R +Q R + + GS V+ D + + + + + +
Sbjct: 22 IRPDLRSIHQYRPLVAKTSFLPGSNGSARVRTEDGSECIVSVKSKVVLISEEEEVQQQQG 81
Query: 60 TAEYGMLPRSTGNRVKREA------------VSGRQGGRSQEIQRMIGRALRSVVDLSAL 107
+ G+R + + + + +S
Sbjct: 82 HNLIEVDIDIVGHRDDSNYVANLKFQLTNLLQQNFPFEVLKLTSKYTFKLYIDCIIISHS 141
Query: 108 GSRQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKG-------- 159
+I A TR + +
Sbjct: 142 CYPLSLISIANYLALKTTRLPLLISDVNDEEIAELPTFSDDWENAKLIQDYHLNANTRGG 201
Query: 160 -------HVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGS------- 205
I+ G++ I+D + E+ ++ ++ I + +
Sbjct: 202 GSSTKFQPPIFITIGVIGKNLILDPSFEEEQVLENGLIISFYNNKVITPISNTNFAVNSN 261
Query: 206 -AERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
+ Q L L ++I+ +I +
Sbjct: 262 NSNFKGLDQSLLIQSLTLCNKYCPNIIRALDSLIEED 298
>gi|255024685|ref|ZP_05296671.1| polynucleotide phosphorylase/polyadenylase [Listeria monocytogenes
FSL J1-208]
Length = 199
Score = 42.5 bits (98), Expect = 0.054, Method: Composition-based stats.
Identities = 7/37 (18%), Positives = 13/37 (35%)
Query: 203 QGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
Q + S+ L AK+ +++ IS
Sbjct: 1 QMDIKIDGLSRQILDEALTQAKEGRLHILEHLTSTIS 37
>gi|123974777|ref|XP_001314009.1| hypothetical protein [Trichomonas vaginalis G3]
gi|121895992|gb|EAY01157.1| hypothetical protein TVAG_189430 [Trichomonas vaginalis G3]
Length = 329
Score = 42.5 bits (98), Expect = 0.056, Method: Composition-based stats.
Identities = 15/109 (13%), Positives = 32/109 (29%), Gaps = 17/109 (15%)
Query: 1 MRLSGRQENQMREI---SLTR-RVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKH 56
+R GR+ ++ R++ +T V+ V+ G+T + T +P K
Sbjct: 19 IRGDGRRFDESRKLIVQEITTPGVAN-------VQLGNTRVTAITTARLAMPALSTPKKG 71
Query: 57 GWITAEYGMLPRS------TGNRVKREAVSGRQGGRSQEIQRMIGRALR 99
+ P + S R ++ +
Sbjct: 72 THNIYIFNDTPVQKSTAEAFQTYFRMIWKSCRILEDESLCVKVGEKVWM 120
>gi|255085244|ref|XP_002505053.1| predicted protein [Micromonas sp. RCC299]
gi|226520322|gb|ACO66311.1| predicted protein [Micromonas sp. RCC299]
Length = 168
Score = 42.1 bits (97), Expect = 0.061, Method: Composition-based stats.
Identities = 25/152 (16%), Positives = 44/152 (28%), Gaps = 15/152 (9%)
Query: 11 MREISLTRRVSKYAEGSCLVKFG--DTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPR 68
MR++ R + AEGS + G + ++ + + I
Sbjct: 1 MRQMKTERNPLQRAEGSARWEQGTHRSVVMAAVYGPTQTQARKEDVDKLAIEVC------ 54
Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
G Q + +R + R L +V + + + VI ADG
Sbjct: 55 -------WRPPFGLQTPADVDAERALRRTLEQIVLTAKYPRLGLRVVVQVISADGAVEAC 107
Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGH 160
A+ AL D M ++
Sbjct: 108 AMNATCHALMDAGVEMFGTLVAATVAIPKIID 139
>gi|146086838|ref|XP_001465658.1| exosome complex exonuclease RRP45 homolog [Leishmania infantum
JPCM5]
gi|134069757|emb|CAM68083.1| putative exosome complex exonuclease RRP45 homolog [Leishmania
infantum JPCM5]
gi|322499112|emb|CBZ34184.1| unnamed protein product [Leishmania donovani BPK282A1]
Length = 363
Score = 42.1 bits (97), Expect = 0.074, Method: Composition-based stats.
Identities = 23/181 (12%), Positives = 47/181 (25%), Gaps = 9/181 (4%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+R R+ NQ+R + + + VK G+T T + + P R +
Sbjct: 30 LRPDQREANQLRVVEMDFPLLSRDV--VQVKCGNTVATATVSCDLVEPSPYRPKHGFFEV 87
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
+L R + + + + L + G R ID +VI
Sbjct: 88 HARQLL----HERDPLDQFKEIKRISMYLTRLLSSSVLETEGLCVIPGRRVWSIDAEVII 143
Query: 121 ADGGTRTAAIT--GAWVALHDCLQHMED-CSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ + AL + + + + +
Sbjct: 144 VNNDGNVQDVAQWAVMAALQHVRRPELTIRGEDVIVHPPHERDPVPLPLHHTPLSFTFAV 203
Query: 178 D 178
Sbjct: 204 C 204
>gi|157869515|ref|XP_001683309.1| exosome complex exonuclease RRP45 homolog [Leishmania major strain
Friedlin]
gi|68224193|emb|CAJ04881.1| putative exosome complex exonuclease RRP45 [Leishmania major strain
Friedlin]
Length = 363
Score = 41.8 bits (96), Expect = 0.079, Method: Composition-based stats.
Identities = 24/181 (13%), Positives = 48/181 (26%), Gaps = 9/181 (4%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+R R NQ+R + + + VK G+T T + + P R +
Sbjct: 30 LRPDQRDANQLRVVEIDFPLLSRDV--VQVKCGNTVATATISCDLVEPSPYRPKHGFFEV 87
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
+L R + + + + G L + G R ID +VI
Sbjct: 88 HARQLL----NERDPLDQSKEIKRISMYLTRLLSGSVLETESLCVIPGRRVWSIDAEVII 143
Query: 121 ADGGTRTAAIT--GAWVALHDCLQHMED-CSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ + AL + + + + + +
Sbjct: 144 VNNDGNAQDVAQWAVMTALQHVRRPELTIRGEDVIVHPPHERDPVPLPLHHIPLSFTFAV 203
Query: 178 D 178
Sbjct: 204 C 204
>gi|281348318|gb|EFB23902.1| hypothetical protein PANDA_021543 [Ailuropoda melanoleuca]
Length = 196
Score = 41.8 bits (96), Expect = 0.083, Method: Composition-based stats.
Identities = 23/141 (16%), Positives = 42/141 (29%), Gaps = 12/141 (8%)
Query: 110 RQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHME---------DCSNKFQLSQVLKGH 160
+ D + DG A AL + + K + ++ H
Sbjct: 54 WVLYCDIICLDYDGNILDACTFALLAALKNVQLPEVTINEETGLAEVHLKKKSYLNIRTH 113
Query: 161 VAAISCGMLCGYP-IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAM 219
A S + IVD E+ VM + G + + +
Sbjct: 114 PVATSFAVFDDTLLIVDPTGEEEHLATGTLTVVMDEEGKLCCLHKPG--IGLTGAKLQDC 171
Query: 220 LNLAKDRIADLIKLQKDVISN 240
++ A R ++ KL +VI +
Sbjct: 172 MSRAVTRHKEVKKLMDEVIKS 192
>gi|198433182|ref|XP_002130561.1| PREDICTED: similar to predicted protein isoform 2 [Ciona
intestinalis]
Length = 193
Score = 41.8 bits (96), Expect = 0.086, Method: Composition-based stats.
Identities = 21/160 (13%), Positives = 50/160 (31%), Gaps = 5/160 (3%)
Query: 83 QGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVALHDCLQ 142
+ ++R + + + L+ I ++Q G + AI VAL D
Sbjct: 33 PTVNEKYLERFVQGVCENAIMLALHPRTAFAIIVQIMQDQGSLLSCAINAVCVALQDAGV 92
Query: 143 HMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEV 202
M+ ++ K + + + +S + F + +
Sbjct: 93 SMKHLPVAVTVAL-RKESESELEDATDVLIINPTIKEESESFSILTFVFDSVNKNLLCM- 150
Query: 203 QGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNEV 242
+ L AK+ +++K +D ++ +V
Sbjct: 151 ---HSQGPLLPKQHERCLKAAKEATEEVLKFFRDSVTQKV 187
>gi|145349570|ref|XP_001419203.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144579434|gb|ABO97496.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 257
Score = 41.8 bits (96), Expect = 0.086, Method: Composition-based stats.
Identities = 30/249 (12%), Positives = 64/249 (25%), Gaps = 33/249 (13%)
Query: 25 EGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGNR------VKREA 78
EG C+V+ G T + + + P + G + + + +
Sbjct: 7 EGVCVVRLGRTIACASTSAMLERPQSAGASSEGVLRVDCEFSSGACEGFAREGRANRETR 66
Query: 79 VSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITG------ 132
+ G E RA+ G R ++ C V A
Sbjct: 67 QRAKDLGALLERGLKDARAVDVESLCVLAGKRVWVVTCAVTILAHDGNLAGAASLAACGS 126
Query: 133 --------AWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIV---DLDYGE 181
V + + + + + A + P + D E
Sbjct: 127 LMTYRRPECAVDPNTGTVTVHSADAREAIPLNMHHFPIASTYCFFDEVPGLAVADPTLEE 186
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV---- 237
+ T D V+ + + + + + A + +L K+
Sbjct: 187 EVTADASIVVVVNTHDEVCALSKTGNGVP--SEDLKRCVRNASRTAREWTELLKEAAADF 244
Query: 238 ----ISNEV 242
++N+V
Sbjct: 245 EADRLANKV 253
>gi|241954590|ref|XP_002420016.1| exosome complex exonuclease rrp42 (ec 3.1.13.-) (ribosomal rna
processing protein 42); exosome complex exonuclease,
putative; ribosomal RNA processing protein, putative
[Candida dubliniensis CD36]
gi|223643357|emb|CAX42232.1| exosome complex exonuclease rrp42 (ec 3.1.13.-) (ribosomal rna
processing protein 42) [Candida dubliniensis CD36]
Length = 304
Score = 41.8 bits (96), Expect = 0.088, Method: Composition-based stats.
Identities = 28/275 (10%), Positives = 65/275 (23%), Gaps = 35/275 (12%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGD-THLLTTATLEEKVPMWIRNTKHGWI 59
+R R +Q R + + GS V+ D + + + + V + +
Sbjct: 22 IRPDLRSIHQYRPLVAKTSFLPGSNGSARVRTEDGSECIVSVK-SKVVLISEEEEEKNQS 80
Query: 60 TAEYGMLPRSTGNRVKREA------------VSGRQGGRSQEIQRMIGRALRSVVDLSAL 107
+ G+R + R + + +S
Sbjct: 81 QNLIEVDIDIVGHRDDSNYVANLKFQLTNLLQQNFPFEVLKLTSRYTFKLYIDCIIISHS 140
Query: 108 GSRQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKG-------- 159
+I A TR + +
Sbjct: 141 CYPLSLISLTNYLALKTTRLPLLISDVNDEEIAELPTFSDDWENAKLIQDYHLNDTKEGQ 200
Query: 160 -----HVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGS--------A 206
I+ G++ I D + E+ ++ ++ I + + +
Sbjct: 201 PSKFQPPIFITIGVIGKNLIFDPSFEEEQVLENGLIISFYNNKVITPISNTNFAVNSNNS 260
Query: 207 ERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
Q L L ++I+ +I +
Sbjct: 261 NFKGLDQSLLIQSLALCNKYCPNIIRALDSLIEED 295
>gi|167384641|ref|XP_001737034.1| hypothetical protein [Entamoeba dispar SAW760]
gi|165900310|gb|EDR26654.1| hypothetical protein EDI_271600 [Entamoeba dispar SAW760]
Length = 232
Score = 41.8 bits (96), Expect = 0.088, Method: Composition-based stats.
Identities = 24/217 (11%), Positives = 53/217 (24%), Gaps = 7/217 (3%)
Query: 16 LTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGNRVK 75
+ + V + S + G+T ++ + E V M + I E +
Sbjct: 15 IKKNVIHNLQSSASYRIGNTQVVCGISTEI-VQMIQDGKEPQHIEVEIKRSGLNEDKSAM 73
Query: 76 REAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWV 135
E++ + R + + ++ + A +
Sbjct: 74 IESIQKWIEEVLNDKDLFGNR--EKFIVSTEDKETSFYQKIRLVNYIIDDDGSVFDVAIL 131
Query: 136 ALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTD 195
A L +E K L + +PI + E+ T +
Sbjct: 132 ASITALLTLELQEMKIGLDGLCSYDKTKKYQLHFNYHPIPFSFFMENGTKTTAYLSFILT 191
Query: 196 SGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
I + + S + R +
Sbjct: 192 ETEINHIHIHGGESVISPELLLGC----TSRCRTIFD 224
>gi|84999936|ref|XP_954689.1| exosome complex exonuclease [Theileria annulata]
gi|65305684|emb|CAI74009.1| exosome complex exonuclease, putative [Theileria annulata]
Length = 322
Score = 41.4 bits (95), Expect = 0.098, Method: Composition-based stats.
Identities = 22/258 (8%), Positives = 63/258 (24%), Gaps = 28/258 (10%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIR------NT 54
+R+ GR + + ++ G+ L+ FG+T + T + E P R
Sbjct: 32 LRIDGRSLDSY--LYVSVDF-DGPPGNSLISFGNTVIFTCVSQEIVEPNSERPNEGFLFF 88
Query: 55 KHGWITAEYGMLPRSTGNRVKREA----VSGRQGGRSQEIQRMIGRA-------LRSVVD 103
P T ++ ++ I + V
Sbjct: 89 NVETSFTSECYEPGKTTDQEHNLIYFLENMFKESSCLDLETLCITSGKQVLALRVYVHVL 148
Query: 104 LSALGSRQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHME-------DCSNKFQLSQV 156
+ + + + + +
Sbjct: 149 QDDGNLLSACSFSALASLLHYRKPLMELSDELNYSFYGLWHKGTPLNIYHVPILVTVWLL 208
Query: 157 LKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHF 216
+ + +++ + E + + G ++ + + + F
Sbjct: 209 ETRDHSFLDHNSSEYTFVLEPNSFEQKLLKTQIIILFNQFGEVLWIYKNG-STPVPLETF 267
Query: 217 FAMLNLAKDRIADLIKLQ 234
+ ++ +K R + L +
Sbjct: 268 ESAISASKQRASQLYSIL 285
>gi|255522516|ref|ZP_05389753.1| ribonuclease PH [Listeria monocytogenes FSL J1-175]
Length = 31
Score = 41.4 bits (95), Expect = 0.099, Method: Composition-based stats.
Identities = 12/30 (40%), Positives = 18/30 (60%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLV 30
MR+ GR+ N +R I +T + EGS L+
Sbjct: 1 MRVDGRESNALRNIEVTPDYLMHPEGSVLI 30
>gi|50427333|ref|XP_462279.1| DEHA2G17028p [Debaryomyces hansenii CBS767]
gi|49657949|emb|CAG90781.1| DEHA2G17028p [Debaryomyces hansenii]
Length = 288
Score = 41.4 bits (95), Expect = 0.10, Method: Composition-based stats.
Identities = 6/32 (18%), Positives = 13/32 (40%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKF 32
+R R ++Q R + + GS ++
Sbjct: 21 IRPDSRSDHQFRPLEAKTSFLPASNGSARIRL 52
>gi|497643|gb|AAA18832.1| PM-Scl-75 autoantigen [Homo sapiens]
Length = 372
Score = 41.4 bits (95), Expect = 0.10, Method: Composition-based stats.
Identities = 29/173 (16%), Positives = 53/173 (30%), Gaps = 15/173 (8%)
Query: 81 GRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVALHDC 140
R R + I VV + QI +D ++ DG AA A VAL
Sbjct: 19 NRLMERCLRNSKCIDTESLCVVAGEKV--WQIRVDLHLLNHDGNIIDAASIAAIVALCHF 76
Query: 141 LQHMED----------CSNKFQLSQVLKGHVAAISCGMLCGYPIV--DLDYGEDSTIDVD 188
+ + + + +S + D + E+ +D
Sbjct: 77 RRPDVSVQGDEVTLYTPEERDPVPLSIHHMPICVSFAFFQQGTYLLVDPNEREERVMDGL 136
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
M I +Q S +D +A ++A++ +L + N+
Sbjct: 137 LVIAMNKHREICTIQSSGGIMLL-KDQVLRCSKIAGVKVAEITELILKALEND 188
>gi|179287|gb|AAA58384.1| autoantigen [Homo sapiens]
gi|63992811|gb|AAY40968.1| unknown [Homo sapiens]
Length = 355
Score = 41.4 bits (95), Expect = 0.11, Method: Composition-based stats.
Identities = 29/173 (16%), Positives = 53/173 (30%), Gaps = 15/173 (8%)
Query: 81 GRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVALHDC 140
R R + I VV + QI +D ++ DG AA A VAL
Sbjct: 19 NRLMERCLRNSKCIDTESLCVVAGEKV--WQIRVDLHLLNHDGNIIDAASIAAIVALCHF 76
Query: 141 LQHMED----------CSNKFQLSQVLKGHVAAISCGMLCGYPIV--DLDYGEDSTIDVD 188
+ + + + +S + D + E+ +D
Sbjct: 77 RRPDVSVQGDEVTLYTPEERDPVPLSIHHMPICVSFAFFQQGTYLLVDPNEREERVMDGL 136
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
M I +Q S +D +A ++A++ +L + N+
Sbjct: 137 LVIAMNKHREICTIQSSGGIMLL-KDQVLRCSKIAGVKVAEITELILKALEND 188
>gi|146414660|ref|XP_001483300.1| hypothetical protein PGUG_04029 [Meyerozyma guilliermondii ATCC
6260]
gi|146391773|gb|EDK39931.1| hypothetical protein PGUG_04029 [Meyerozyma guilliermondii ATCC
6260]
Length = 252
Score = 41.4 bits (95), Expect = 0.11, Method: Composition-based stats.
Identities = 31/228 (13%), Positives = 59/228 (25%), Gaps = 36/228 (15%)
Query: 14 ISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGNR 73
+ L + A GS V+ D + + P IR + + +
Sbjct: 42 MFLKTGLVDTASGSAYVEADDCIVQVSVYG----PRPIRGSFIEKASFSVECKFLPYVTK 97
Query: 74 VKREAVSGRQGGRS------QEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
V E + G+ Q I + AL + L I I VI +
Sbjct: 98 VAAEHQNTNPNGKPGMNSIEQRISTYVETALLPCLLLENYPKSTIDIYVTVIANKSASLL 157
Query: 128 ----AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDS 183
+ + +AL D ++D + +
Sbjct: 158 ELTNWIVNCSSLALVDSAIEIKDIVTGGVATIEDENDS---------------------K 196
Query: 184 TIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231
A+F+ + IV ++ L ++R +
Sbjct: 197 NSQCLASFMNLRNNEIVGFWIDG-GQELNEKVLTKTLETCQERAQVVR 243
>gi|50289635|ref|XP_447249.1| hypothetical protein [Candida glabrata CBS 138]
gi|49526558|emb|CAG60182.1| unnamed protein product [Candida glabrata]
Length = 264
Score = 41.4 bits (95), Expect = 0.12, Method: Composition-based stats.
Identities = 9/30 (30%), Positives = 13/30 (43%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLV 30
+R GR+ Q R I L + GS +
Sbjct: 21 IRPDGREAYQNRPIELFVNFLPSSNGSSRI 50
>gi|281200684|gb|EFA74902.1| hypothetical protein PPL_11936 [Polysphondylium pallidum PN500]
Length = 262
Score = 41.4 bits (95), Expect = 0.13, Method: Composition-based stats.
Identities = 34/233 (14%), Positives = 63/233 (27%), Gaps = 47/233 (20%)
Query: 6 RQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGM 65
R + Q R+I + + A GS ++ T ++ + + E
Sbjct: 56 RSDEQFRQIFMNTGIISSASGSSYIEIEQTKIICSVHGPRATHKTELFETAK-LNCELKY 114
Query: 66 LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125
ST + S ++ +I +A+ + L I I V+ G
Sbjct: 115 ASFSTHDARSDYVESTKEKD----YSLIITQAIIGAIRLEKYPKAAIDIYILVLCDAGSA 170
Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185
A+I A +AL D M D
Sbjct: 171 LAASIVAASMALADAGVEMYDLVAACSS-------------------------------- 198
Query: 186 DVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
M I ++ + E S + ++L D + + K +
Sbjct: 199 -------MPSHNEITQLLQTGE---LSYTNIVDGIDLCIDGCDKVYSIMKQNL 241
>gi|253743571|gb|EES99934.1| Hypothetical protein GL50581_2832 [Giardia intestinalis ATCC 50581]
Length = 227
Score = 41.4 bits (95), Expect = 0.13, Method: Composition-based stats.
Identities = 16/87 (18%), Positives = 29/87 (33%), Gaps = 7/87 (8%)
Query: 1 MRLSGRQENQMREI-SLTRRVSKYAEGSCLVKFGDTHLLTTA-TLE----EKVPMWIRNT 54
+R+ GR N R + V + S + G+ +L TL+ E++P
Sbjct: 18 VRIDGRDTNTFRSVLREQSGVLCGVDASSSCQIGEAQVLCFTRTLDLQGQEELPDEAETE 77
Query: 55 KH-GWITAEYGMLPRSTGNRVKREAVS 80
+Y + NR +
Sbjct: 78 GEAAHTKIQYLPTSLAPHNRTRLAYCQ 104
>gi|159118611|ref|XP_001709524.1| Exosome complex exonuclease, putative [Giardia lamblia ATCC
50803]
gi|157437641|gb|EDO81850.1| Exosome complex exonuclease, putative [Giardia lamblia ATCC
50803]
Length = 314
Score = 41.0 bits (94), Expect = 0.13, Method: Composition-based stats.
Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 3/36 (8%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHL 37
R+ GR + R+ISL+ ++ GS LV+ G T +
Sbjct: 16 RIDGRGIGETRDISLSFFTAR---GSVLVEKGKTKV 48
>gi|308497422|ref|XP_003110898.1| hypothetical protein CRE_04585 [Caenorhabditis remanei]
gi|308242778|gb|EFO86730.1| hypothetical protein CRE_04585 [Caenorhabditis remanei]
Length = 526
Score = 41.0 bits (94), Expect = 0.13, Method: Composition-based stats.
Identities = 11/38 (28%), Positives = 18/38 (47%)
Query: 6 RQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL 43
R E R + + V +GS +FG+T +L T+
Sbjct: 31 RSETTFRPLCVKCGVFGAQDGSGYAEFGNTRVLAQITV 68
>gi|67466709|ref|XP_649496.1| hypothetical protein [Entamoeba histolytica HM-1:IMSS]
gi|56465950|gb|EAL44110.1| hypothetical protein EHI_092720 [Entamoeba histolytica HM-1:IMSS]
Length = 232
Score = 41.0 bits (94), Expect = 0.13, Method: Composition-based stats.
Identities = 20/218 (9%), Positives = 50/218 (22%), Gaps = 7/218 (3%)
Query: 16 LTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGNRVK 75
+ + V + S + G+T ++ + E + + E +
Sbjct: 15 IKKNVIHNLKSSASYRIGNTQIICGISTE---IVQMIQDGKEPQYIEVEIKRSGLNEDKS 71
Query: 76 REAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWV 135
S + + ++ + ++ + A +
Sbjct: 72 PMIESIPMWIEEVLNDKDLFENREKLLVSTEDKETSFYQKIHLVNYIIDDDGSVFDVAIL 131
Query: 136 ALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTD 195
A L +E K L + +PI + E+ T +
Sbjct: 132 ASIKALLTLELQEMKIGLDGLCSYDETKKYQLHFNYHPIPFSFFMENGTKTTAHLSFILT 191
Query: 196 SGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
I + + S + R +
Sbjct: 192 ETEINHIHIHGGESVISPELLLGC----TSRCRTIFDA 225
>gi|149048738|gb|EDM01279.1| exosome component 9, isoform CRA_a [Rattus norvegicus]
Length = 353
Score = 41.0 bits (94), Expect = 0.14, Method: Composition-based stats.
Identities = 30/173 (17%), Positives = 55/173 (31%), Gaps = 15/173 (8%)
Query: 81 GRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVALHDC 140
R R + I VV + QI +D ++ DG AA A VAL
Sbjct: 19 NRLLERCLRNSKCIDTESLCVVAGEKV--WQIRVDLHLLNHDGNIIDAASIAAIVALCHF 76
Query: 141 LQHMED----------CSNKFQLSQVLKGHVAAISCGMLCGYPIV--DLDYGEDSTIDVD 188
+ + + + +S + D + E+ +D
Sbjct: 77 RRPDVSVQGEEVTLYTPEERDPVPLSIHHMPICVSFAFFQQGTYLLVDPNEREERVMDGL 136
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
M I +Q S +D F +A ++A++ +L + + N+
Sbjct: 137 LVIAMNKHREICTIQSSGGIMLL-KDQVFRCSKIAGVKVAEITELIQKALEND 188
>gi|148703132|gb|EDL35079.1| exosome component 9, isoform CRA_b [Mus musculus]
Length = 353
Score = 41.0 bits (94), Expect = 0.14, Method: Composition-based stats.
Identities = 30/173 (17%), Positives = 55/173 (31%), Gaps = 15/173 (8%)
Query: 81 GRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVALHDC 140
R R + I VV + QI +D ++ DG AA A VAL
Sbjct: 19 NRLLERCLRNSKCIDTESLCVVAGEKV--WQIRVDLHLLNHDGNIIDAASIAAIVALCHF 76
Query: 141 LQHMED----------CSNKFQLSQVLKGHVAAISCGMLCGYPIV--DLDYGEDSTIDVD 188
+ + + + +S + D + E+ +D
Sbjct: 77 RRPDVSVQGEEVTLYTPEERDPVPLSIHHMPICVSFAFFQQGTYLLVDPNEREERVMDGL 136
Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
M I +Q S +D F +A ++A++ +L + + N+
Sbjct: 137 LVIAMNKHREICTIQSSGGIMLL-KDQVFRCSKIAGVKVAEITELIQKALEND 188
>gi|261326152|emb|CBH08978.1| RNasePH-like protein [Trypanosoma brucei gambiense DAL972]
Length = 397
Score = 41.0 bits (94), Expect = 0.15, Method: Composition-based stats.
Identities = 10/45 (22%), Positives = 16/45 (35%), Gaps = 3/45 (6%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAE---GSCLVKFGDTHLLTTAT 42
+R GR Q R ++ S V+ T ++ AT
Sbjct: 23 VRSDGRSLTQRRPFTVVTNRGSTTHFEGSSVEVQCDGTTVVAAAT 67
>gi|325116060|emb|CBZ51614.1| conserved hypothetical protein [Neospora caninum Liverpool]
Length = 368
Score = 41.0 bits (94), Expect = 0.16, Method: Composition-based stats.
Identities = 11/48 (22%), Positives = 18/48 (37%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVP 48
+R GR R+ ++ GS V+ G+ + L E P
Sbjct: 23 VRADGRSFLTYRQPLISSNTLTNCCGSASVRAGNNYYLAGVKCEVGPP 70
>gi|261335123|emb|CBH18117.1| exosome-associated protein 4, putative [Trypanosoma brucei
gambiense DAL972]
Length = 232
Score = 40.6 bits (93), Expect = 0.17, Method: Composition-based stats.
Identities = 9/53 (16%), Positives = 22/53 (41%), Gaps = 1/53 (1%)
Query: 2 RLSGRQ-ENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRN 53
R GR+ +++R + V + S ++ G T ++ +++ R
Sbjct: 8 RSHGRRSPDEVRYPHIVLNVLGQSYSSACIEVGSTRVVCAVHHPQQLIDEYRG 60
>gi|25136928|emb|CAD56698.1| exosome-associated protein 4 [Trypanosoma brucei]
Length = 227
Score = 40.6 bits (93), Expect = 0.17, Method: Composition-based stats.
Identities = 9/53 (16%), Positives = 22/53 (41%), Gaps = 1/53 (1%)
Query: 2 RLSGRQ-ENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRN 53
R GR+ +++R + V + S ++ G T ++ +++ R
Sbjct: 3 RSHGRRSPDEVRYPHIVLNVLGQSYSSACIEVGSTRVVCAVHHPQQLIDEYRG 55
>gi|255722417|ref|XP_002546143.1| hypothetical protein CTRG_00925 [Candida tropicalis MYA-3404]
gi|240136632|gb|EER36185.1| hypothetical protein CTRG_00925 [Candida tropicalis MYA-3404]
Length = 288
Score = 40.6 bits (93), Expect = 0.17, Method: Composition-based stats.
Identities = 29/248 (11%), Positives = 65/248 (26%), Gaps = 36/248 (14%)
Query: 20 VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGNRVKREAV 79
V A GS ++ +T + + P+ ++ E LP +
Sbjct: 44 VITNANGSAYLEINNTIIEVSIFGPR--PIRGSFIDRATLSIECKFLPHISPQPQSNIFN 101
Query: 80 ------SGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADG---------- 123
++ + + L I I +I D
Sbjct: 102 DGSKNIRTGMTNVEHKLSNYLESCFLPCLVLEKYPKSTIDIQVSIISVDKEMLNDDDGRT 161
Query: 124 --------GTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIV 175
+ +AL D M D QV + +
Sbjct: 162 NNDNSSLLWLCQWMVCCCSLALVDSGIEMRD---IVSSGQVRYTKSGKVLINPIGNTTNE 218
Query: 176 DLDYGEDSTIDVDANFVMTDSGHIVEVQGSA---ERATFSQDHFFAMLNLAKDRIADLIK 232
+ E+ +D +F+ + IV + + E+ + ++ + + K
Sbjct: 219 KEEDDEEEGVDALVSFMNLKNDEIVGIWFESNDDEKVPLDESQMEKLI----EECNKMSK 274
Query: 233 LQKDVISN 240
+ + I++
Sbjct: 275 IVRANINS 282
>gi|303389534|ref|XP_003072999.1| RNase PH-like exoribonuclease [Encephalitozoon intestinalis ATCC
50506]
gi|303302143|gb|ADM11639.1| RNase PH-like exoribonuclease [Encephalitozoon intestinalis ATCC
50506]
Length = 223
Score = 40.6 bits (93), Expect = 0.18, Method: Composition-based stats.
Identities = 29/225 (12%), Positives = 60/225 (26%), Gaps = 32/225 (14%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R GR+ + R++ + + SCL+ G + LL ++ G
Sbjct: 12 RFDGRKIKETRKLEVEK--ISN---SCLISMGKSRLLAV-------------SQKGISRP 53
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIG-RALRSVVDLSALGSRQIIIDCDVIQ 120
N + + + I +++ L ++I D+
Sbjct: 54 YVDKSHEGIVNFSISMGGKRHERLVNFLHKVYIKQKSIDLESLCIKLNEEVVLIHIDLRI 113
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
++ V S L + S + I D
Sbjct: 114 LSCDGSIYSLIVQGVN-----------SVLETLGVKMNYMPQCFSYCSIDNVVITDPSEN 162
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKD 225
E D + VM IV ++ + + F ++ +
Sbjct: 163 EQIEEDWNCVVVMKSPKEIVFLEKIGRECSI--EQVFETIDRSVK 205
>gi|74025204|ref|XP_829168.1| exosome-associated protein 4 [Trypanosoma brucei TREU927]
gi|70834554|gb|EAN80056.1| exosome-associated protein 4 [Trypanosoma brucei]
Length = 227
Score = 40.6 bits (93), Expect = 0.19, Method: Composition-based stats.
Identities = 9/53 (16%), Positives = 22/53 (41%), Gaps = 1/53 (1%)
Query: 2 RLSGRQ-ENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRN 53
R GR+ +++R + V + S ++ G T ++ +++ R
Sbjct: 3 RSHGRRSPDEVRYPHIVLNVLGQSYSSACIEVGSTRVVCAVHHPQQLIDEYRG 55
>gi|322491850|emb|CBZ27123.1| exosome complex exonuclease RRP45 homolog,putative [Leishmania
mexicana MHOM/GT/2001/U1103]
Length = 363
Score = 40.6 bits (93), Expect = 0.20, Method: Composition-based stats.
Identities = 24/181 (13%), Positives = 50/181 (27%), Gaps = 9/181 (4%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+R R+ NQ+R + + + VK G+T T + + P R +
Sbjct: 30 LRPDQREANQLRVVEMDFPLLSRDV--VQVKCGNTVATATVSCDLVEPSPYRPKHGFFEV 87
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
+L R + + + + + G L + G R ID +VI
Sbjct: 88 HARQLL----HERDPLDQLKEIKRISMYLTRLLSGSVLETEGLCVIPGRRVWSIDAEVII 143
Query: 121 ADGGTRTAAIT--GAWVALHDCLQHMED-CSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
+ + AL + + + + + +
Sbjct: 144 VNNDGNVQDVAQWAVMAALQHVRRPELTIRGEDVVVHPPHERDPVPLPLHHIPLSFTFAV 203
Query: 178 D 178
Sbjct: 204 C 204
>gi|289672871|ref|ZP_06493761.1| ribonuclease PH [Pseudomonas syringae pv. syringae FF5]
Length = 30
Score = 40.6 bits (93), Expect = 0.21, Method: Composition-based stats.
Identities = 9/30 (30%), Positives = 18/30 (60%)
Query: 211 FSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
F + AML LA+ + +L +LQ+ +++
Sbjct: 1 FQPEELNAMLALAQKGMTELFELQRAALAD 30
>gi|218678596|ref|ZP_03526493.1| polynucleotide phosphorylase/polyadenylase [Rhizobium etli CIAT
894]
Length = 112
Score = 40.6 bits (93), Expect = 0.21, Method: Composition-based stats.
Identities = 5/62 (8%), Positives = 20/62 (32%), Gaps = 3/62 (4%)
Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
+++ E +D T ++ V+ A+ +++ + + ++
Sbjct: 1 YVLNPHLDEMDESSLDLVVAGTYD-AVLMVESEAKE--LNEEVMLGAVMFGHNGFQPVLD 57
Query: 233 LQ 234
Sbjct: 58 AI 59
>gi|299755052|ref|XP_002912058.1| hypothetical protein CC1G_13591 [Coprinopsis cinerea okayama7#130]
gi|298411047|gb|EFI28564.1| hypothetical protein CC1G_13591 [Coprinopsis cinerea okayama7#130]
Length = 189
Score = 40.2 bits (92), Expect = 0.22, Method: Composition-based stats.
Identities = 22/100 (22%), Positives = 34/100 (34%), Gaps = 9/100 (9%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+RL GR QMR+ +T G G T ++ + V G IT
Sbjct: 22 LRLDGRLPLQMRDPVITFGP---ELGYVECALGKTRVIANVEA-KMVKPTPERPFEGIIT 77
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRS 100
+ P ++ GR I RM+ + L+
Sbjct: 78 IHSEISPMASSE-----YEPGRPSEEEVTITRMLDKVLKR 112
>gi|124487858|gb|ABN12012.1| hypothetical protein [Maconellicoccus hirsutus]
Length = 138
Score = 40.2 bits (92), Expect = 0.22, Method: Composition-based stats.
Identities = 27/138 (19%), Positives = 45/138 (32%), Gaps = 14/138 (10%)
Query: 105 SALGSRQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAI 164
QI I +V+QADG + A +AL D +++ +
Sbjct: 1 ELYPFSQIDIYLEVLQADGSNYCTCVNAATLALIDAGIPLKEYII-----------ACSA 49
Query: 165 SCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAK 224
S G I E + SG I ++ S + F DH +LN A
Sbjct: 50 SLGNGDVPLIDVSHLEESLGGSNLTIAALPLSGQITVLEMSQK---FHIDHLPQVLNEAM 106
Query: 225 DRIADLIKLQKDVISNEV 242
+ + K+ + +
Sbjct: 107 NGCQQIYKILDSAVKTHL 124
>gi|238488533|ref|XP_002375504.1| 3' exoribonuclease family protein [Aspergillus flavus NRRL3357]
gi|220697892|gb|EED54232.1| 3' exoribonuclease family protein [Aspergillus flavus NRRL3357]
Length = 313
Score = 40.2 bits (92), Expect = 0.23, Method: Composition-based stats.
Identities = 29/266 (10%), Positives = 64/266 (24%), Gaps = 42/266 (15%)
Query: 12 REISLTRRVSKYAEGSCLVKFGD------------------THLL---TTATLEEKVPMW 50
R L + A GS +++ + + L T + +P
Sbjct: 33 RPQLLKTGLIPSASGSAYLEY-EPSASLAAARSSPKSLIPPSSALKLACTVHGPKPLPRS 91
Query: 51 IRNTKHGWITAEYGMLPRSTGNRVKR-EAVSGRQGGRSQEIQ----RMIGR----ALRSV 101
+ + +T P + R S R G E + R L
Sbjct: 92 ATFSPNLVLTTHIKYAPFAARKRKGHIRDASERDLGVHLETALRGVIVAERWPKSGLDIT 151
Query: 102 VDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHV 161
+ + + D + G A + V
Sbjct: 152 ITILEAEDDRWWGDAPDSHDAPWGMMNVLAGCITAASAAISDARIDCLDLIAGGVAAIVA 211
Query: 162 AAISCGMLCGYPIVDLDY-GEDSTIDVDANFVMTDSGHIVEVQGSA----------ERAT 210
G ++D D + + M+ I E+ ++ +
Sbjct: 212 DESEDGEAKPKLMLDTDPAEHKAILSACVVAYMSSRDEITEIWLKGDSSKALLGPDDKRS 271
Query: 211 FSQDHFFAMLNLAKDRIADLIKLQKD 236
+ ++ A+ + L + ++
Sbjct: 272 GHEALLDGAVDAARGAHSVLAEAVRE 297
>gi|308162901|gb|EFO65269.1| Hypothetical protein GLP15_106 [Giardia lamblia P15]
Length = 228
Score = 40.2 bits (92), Expect = 0.24, Method: Composition-based stats.
Identities = 26/232 (11%), Positives = 57/232 (24%), Gaps = 26/232 (11%)
Query: 1 MRLSGRQENQMREISLTR-RVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWI 59
+R R R + R + S + G+ +L + K
Sbjct: 18 VRPDDRAPETFRPVVRERSGTLCGVDVSSSCQIGEAQVLCFT-------RALDMQKQEEE 70
Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119
E +T +++ R +S L ++ V+
Sbjct: 71 PNEAEAEVEATHTKIQYIPTLLAP--------HNKKRLAYCQSIVSMLSRNTVLPKSVVL 122
Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179
+ A + DC + + V A G D
Sbjct: 123 YLSLLAYGPSYCTA------ASIAVVDCLRQLDSTLAPLILVGAWKLGGCWVC---DASL 173
Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231
E+ + + ++ + G + ++ + A L + + L
Sbjct: 174 VEEESAEASVLALLDEEGQVQDISKHGN-RPITMADLDAALEMCRTAAQALY 224
>gi|123464254|ref|XP_001317083.1| 3' exoribonuclease family, domain 1 containing protein
[Trichomonas vaginalis G3]
gi|121899808|gb|EAY04860.1| 3' exoribonuclease family, domain 1 containing protein
[Trichomonas vaginalis G3]
Length = 203
Score = 40.2 bits (92), Expect = 0.24, Method: Composition-based stats.
Identities = 11/47 (23%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Query: 2 RLS-GRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKV 47
RL R + REI+ + + ++GS V+ G T ++ +++
Sbjct: 3 RLDTSRVYEEEREIACEKGLCISSQGSSRVRVGKTEVIVNIVGPKQM 49
>gi|254572397|ref|XP_002493308.1| Protein involved in rRNA processing [Pichia pastoris GS115]
gi|238033106|emb|CAY71129.1| Protein involved in rRNA processing [Pichia pastoris GS115]
gi|328352675|emb|CCA39073.1| Polyribonucleotide nucleotidyltransferase [Pichia pastoris CBS
7435]
Length = 291
Score = 40.2 bits (92), Expect = 0.25, Method: Composition-based stats.
Identities = 7/32 (21%), Positives = 12/32 (37%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKF 32
+R R Q R + T + GS ++
Sbjct: 24 IRPDARLNKQFRPLEATCSFLPGSNGSARIRM 55
>gi|150864875|ref|XP_001383874.2| hypothetical protein PICST_43184 [Scheffersomyces stipitis CBS
6054]
gi|149386131|gb|ABN65845.2| predicted protein [Scheffersomyces stipitis CBS 6054]
Length = 288
Score = 40.2 bits (92), Expect = 0.25, Method: Composition-based stats.
Identities = 6/32 (18%), Positives = 13/32 (40%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKF 32
+R R ++Q R + + GS ++
Sbjct: 21 IRPDSRSDHQFRPLEAKTAFLPGSNGSARIRL 52
>gi|2275200|gb|AAB63822.1| putative polyribonucleotide phosphorylase [Arabidopsis thaliana]
Length = 171
Score = 40.2 bits (92), Expect = 0.25, Method: Composition-based stats.
Identities = 11/85 (12%), Positives = 22/85 (25%), Gaps = 1/85 (1%)
Query: 12 REISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRST 70
REI + + + A + V G+T + T+ L + E T
Sbjct: 29 REILVETGLMGRQASSAVTVTDGETIVFTSVCLADVPSEPSDFLPLYVHYQERFSAVGRT 88
Query: 71 GNRVKREAVSGRQGGRSQEIQRMIG 95
+ + +
Sbjct: 89 SGGFFKREGRTKDHEVTFLCLPAAS 113
>gi|42570002|ref|NP_182244.2| 3' exoribonuclease family domain 1 protein-related [Arabidopsis
thaliana]
gi|330255721|gb|AEC10815.1| uncharacterized protein [Arabidopsis thaliana]
Length = 469
Score = 40.2 bits (92), Expect = 0.25, Method: Composition-based stats.
Identities = 11/85 (12%), Positives = 22/85 (25%), Gaps = 1/85 (1%)
Query: 12 REISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRST 70
REI + + + A + V G+T + T+ L + E T
Sbjct: 29 REILVETGLMGRQASSAVTVTDGETIVFTSVCLADVPSEPSDFLPLYVHYQERFSAVGRT 88
Query: 71 GNRVKREAVSGRQGGRSQEIQRMIG 95
+ + +
Sbjct: 89 SGGFFKREGRTKDHEVTFLCLPAAS 113
>gi|320581846|gb|EFW96065.1| hypothetical protein HPODL_2348 [Pichia angusta DL-1]
Length = 292
Score = 40.2 bits (92), Expect = 0.27, Method: Composition-based stats.
Identities = 28/267 (10%), Positives = 75/267 (28%), Gaps = 29/267 (10%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKF--GDTHLLTTATLEEKVPMWIRNTKHGWI 59
R R+ N+ R + GS V G + +++ KV ++ +
Sbjct: 22 RTDSRKTNEFRPLKAVCSFVPNCNGSSRVYNPDG---IECITSVKAKVIRTKDISELINV 78
Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQR-MIGRALRSVVDLSALGSRQIIIDCDV 118
+ ++ + A+ R + + + + + + L +
Sbjct: 79 DVDVEGQRDNSTLCLNLSAMIQRALVNNFDFEVLRLTDKYYFQLYVDILVLSVPGDFKNS 138
Query: 119 IQADGGTRTAAITGAWVALHDCLQH-------------------MEDCSNKFQLSQVLKG 159
+ G ++AL + S +
Sbjct: 139 SYTLYSLLSLISMGTYLALKSAKLPLLTSTTNDREIEEEPSFADDWELSTNLIPADSKFQ 198
Query: 160 HVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQ----GSAERATFSQDH 215
+ G++ +VD E+ ++ + +Q +A+ F++
Sbjct: 199 PMLIFVVGLVGSNVLVDPSLDEEEVLESGLCIGYCQGNIVAPIQSVALSTADGQAFNRKT 258
Query: 216 FFAMLNLAKDRIADLIKLQKDVISNEV 242
L K +++ + +++ EV
Sbjct: 259 LNKALETVKQIGQPVVEALESILNTEV 285
>gi|167945861|ref|ZP_02532935.1| polynucleotide phosphorylase/polyadenylase [Endoriftia persephone
'Hot96_1+Hot96_2']
Length = 205
Score = 40.2 bits (92), Expect = 0.27, Method: Composition-based stats.
Identities = 7/23 (30%), Positives = 10/23 (43%)
Query: 2 RLSGRQENQMREISLTRRVSKYA 24
R+ GR +R IS+ V
Sbjct: 180 RIDGRDTRTVRPISVRTGVLPRT 202
Score = 37.1 bits (84), Expect = 2.3, Method: Composition-based stats.
Identities = 16/91 (17%), Positives = 33/91 (36%), Gaps = 5/91 (5%)
Query: 153 LSQVLKGHVAAISCGMLCGYPIVDLDYGEDS-TIDVDANFVMTDSGHIVEVQGSAERATF 211
+ V + V A G G I++ S D+D T+ ++ V+ A
Sbjct: 1 MPAVQRVLVGACRVGYKDGEYILNAASTGLSADSDLDLIVAGTEE-AVLMVESEANE--L 57
Query: 212 SQDHFFAMLNLAKDRIADLIKLQKDVISNEV 242
S++ + ++ +I ++ EV
Sbjct: 58 SEEVMLGAVLFGHEQSQIVIDTIN-ALAAEV 87
>gi|320582330|gb|EFW96547.1| Protein involved in rRNA processing [Pichia angusta DL-1]
Length = 357
Score = 40.2 bits (92), Expect = 0.28, Method: Composition-based stats.
Identities = 13/71 (18%), Positives = 26/71 (36%), Gaps = 15/71 (21%)
Query: 1 MRLSGRQENQMREISLTR-RVSKY--------------AEGSCLVKFGDTHLLTTATLEE 45
+R S R+ ++ R + ++R V +Y GS +VK G T ++ +
Sbjct: 34 LRPSLRKFDEFRPVVISRAGVGRYEASEPNGDINGVGSVLGSSIVKSGKTTVICLISGAI 93
Query: 46 KVPMWIRNTKH 56
+
Sbjct: 94 VEDDHELVNDY 104
>gi|85014283|ref|XP_955637.1| ribonuclease [Encephalitozoon cuniculi GB-M1]
gi|19171331|emb|CAD27056.1| RIBONUCLEASE PH-LIKE PROTEIN [Encephalitozoon cuniculi GB-M1]
Length = 209
Score = 40.2 bits (92), Expect = 0.28, Method: Composition-based stats.
Identities = 9/50 (18%), Positives = 20/50 (40%), Gaps = 7/50 (14%)
Query: 1 MRLSGRQENQMREISLT---RRVSKYAEGSCLVKFGDTHLLTTATLEEKV 47
R GR+ N++R I T + ++ G+T + + ++
Sbjct: 8 FREDGRRPNELRRIEATKRRIGEKGRVD----MRQGNTQVSVICSGPREI 53
>gi|308481795|ref|XP_003103102.1| hypothetical protein CRE_25738 [Caenorhabditis remanei]
gi|308260478|gb|EFP04431.1| hypothetical protein CRE_25738 [Caenorhabditis remanei]
Length = 256
Score = 39.8 bits (91), Expect = 0.28, Method: Composition-based stats.
Identities = 9/34 (26%), Positives = 15/34 (44%)
Query: 6 RQENQMREISLTRRVSKYAEGSCLVKFGDTHLLT 39
R R + + V +GS +FG+T +L
Sbjct: 31 RSATAFRPLCVKCGVFGAQDGSGYAEFGNTRVLA 64
>gi|303390958|ref|XP_003073709.1| exosome RNAse PH-like protein [Encephalitozoon intestinalis ATCC
50506]
gi|303302857|gb|ADM12349.1| exosome RNAse PH-like protein [Encephalitozoon intestinalis ATCC
50506]
Length = 188
Score = 39.8 bits (91), Expect = 0.30, Method: Composition-based stats.
Identities = 21/145 (14%), Positives = 35/145 (24%), Gaps = 12/145 (8%)
Query: 14 ISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGNR 73
I V + GS + +T + + M R
Sbjct: 4 IRSMMSVIPHCTGSSRFTYNNTTVFCIVHGPSDSISRQEDP---------EMAILDVKWR 54
Query: 74 VKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGA 133
+ R I + L + L R I I +V+ T A+ A
Sbjct: 55 DIILING---RIYDKYFSREIEKILSKRIILELDPCRSIQISFNVVGEVRNTLFCAVNAA 111
Query: 134 WVALHDCLQHMEDCSNKFQLSQVLK 158
+AL D + +
Sbjct: 112 LLALSDAGIPLISMFYASSSFTHEE 136
>gi|147749|gb|AAA24596.1| polynucleotide phosphorylase [Escherichia coli]
Length = 62
Score = 39.8 bits (91), Expect = 0.30, Method: Composition-based stats.
Identities = 7/43 (16%), Positives = 17/43 (39%), Gaps = 1/43 (2%)
Query: 14 ISLTRRV-SKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK 55
++L + ++ A + +V DT + T ++K
Sbjct: 16 VTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFP 58
>gi|302410689|ref|XP_003003178.1| exosome complex exonuclease RRP45 [Verticillium albo-atrum
VaMs.102]
gi|261358202|gb|EEY20630.1| exosome complex exonuclease RRP45 [Verticillium albo-atrum
VaMs.102]
Length = 271
Score = 39.8 bits (91), Expect = 0.31, Method: Composition-based stats.
Identities = 24/227 (10%), Positives = 44/227 (19%), Gaps = 19/227 (8%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+RL GR +Q R I ++ G V G T + P R
Sbjct: 23 VRLDGRPFDQYRTIDISFG---DEYGVVDVSLGKTS-----SPPSSRPWRRRTWSRASPP 74
Query: 61 AEYGMLPRSTGNRV----KREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
+ R + + V + +
Sbjct: 75 TRRCCCRGCSRRRSAAPAPSTWSRSASSPAPKVWSVRAD--VHVVSHDGNIVDAACLAAV 132
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY---- 172
++ + V H AA
Sbjct: 133 AALRHFRKPDAQVEGEDLTVFTPAEREPVPLGWLHSPFCVTFAHFAAKDDSSPDHDGGDV 192
Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAM 219
++D D+ E+ + G + +V
Sbjct: 193 TLLDPDWREEQLRVASCTISLNKLGEVCQVSKLG-GDAVEATTLLQC 238
>gi|71018123|ref|XP_759292.1| hypothetical protein UM03145.1 [Ustilago maydis 521]
gi|46099142|gb|EAK84375.1| hypothetical protein UM03145.1 [Ustilago maydis 521]
Length = 332
Score = 39.8 bits (91), Expect = 0.31, Method: Composition-based stats.
Identities = 8/62 (12%), Positives = 21/62 (33%)
Query: 7 QENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGML 66
+R +S + ++ S FG +++ + + +V + T + Y
Sbjct: 18 SPTALRSLSAEFGILARSDASASFSFGPVNVVASVSGPTEVRIRDELTDRATLDVIYQPQ 77
Query: 67 PR 68
Sbjct: 78 HG 79
>gi|322830681|gb|EFZ33623.1| ribosomal RNA processing protein 41B, putative [Trypanosoma cruzi]
Length = 270
Score = 39.8 bits (91), Expect = 0.32, Method: Composition-based stats.
Identities = 22/138 (15%), Positives = 42/138 (30%), Gaps = 4/138 (2%)
Query: 11 MREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHG---WITAEYGMLP 67
MR L +GS G T ++ K G ++ +
Sbjct: 1 MRGKELRTSELTQFDGSAWYSQGLTTVVAAVNGPVAA-RQEDYRKCGVQVYVNRAVRIPR 59
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
+R+ E Q E++ + ++++VV L + + ++ DG +
Sbjct: 60 AGGTDRLCVEEQRVEQRRMDAEVEMFLTASIQAVVRLDQFPRCVLEVHVTILADDGALLS 119
Query: 128 AAITGAWVALHDCLQHME 145
A AL D
Sbjct: 120 VATNALMCALLDAGVPCR 137
>gi|290791729|gb|EFD95388.1| hypothetical protein GL50803_9847 [Giardia lamblia ATCC 50803]
Length = 229
Score = 39.4 bits (90), Expect = 0.37, Method: Composition-based stats.
Identities = 23/232 (9%), Positives = 54/232 (23%), Gaps = 26/232 (11%)
Query: 1 MRLSGRQENQMREISLTR-RVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWI 59
+R+ R + R + R + S + G+ +L + K
Sbjct: 18 VRIDNRAPDAFRSVVRERSGTLCGVDASSSCQIGEAQVLCFT-------RALDTQKQEEE 70
Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119
E +T +++ S R + A + +
Sbjct: 71 PNEAEAEVEATHTKIQYIPTSLAPHNRERL----------------AYCQSIVSMLSRNT 114
Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179
G A+ + + QL + + + +
Sbjct: 115 ILPKGVVLYLSLLAYGPSYCTTASIAVADCLRQLDGTFAPLIFVGAWKLGGRWICDASLV 174
Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231
E+S + G + ++ + A L + + L
Sbjct: 175 EEESAEASVLAL-LDREGQVQDISKHGSC-PITVADLDAALEICRAAAQALY 224
>gi|256079799|ref|XP_002576172.1| exonuclease rrp45 [Schistosoma mansoni]
gi|238661434|emb|CAZ32407.1| exosome complex exonuclease rrp45 (polymyositis/scleroderma
autoantigen 1) (ribosomal rna processing protein 45),
putative [Schistosoma mansoni]
Length = 446
Score = 39.4 bits (90), Expect = 0.38, Method: Composition-based stats.
Identities = 30/238 (12%), Positives = 63/238 (26%), Gaps = 17/238 (7%)
Query: 19 RVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAE-----------YGMLP 67
G C+VK G T ++ ++E P R ++ Y
Sbjct: 13 GKDPNVSGCCVVKIGATTVMAQVSVEVIEPKHFRPSQGMLFVHFDASILKLSKTLYRKQK 72
Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMI---GRALRSVVDLSALGSRQIIIDCDVIQADGG 124
R R + I R V+L AL + DC + A
Sbjct: 73 RDDEGRRLSAVLQTLLRDSIDLDALCIVAWERVFAVRVELRALSYDGNLGDCGTLAAVAA 132
Query: 125 TRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG---YPIVDLDYGE 181
+V + + + ++ ++ ++ G+ + E
Sbjct: 133 LAAFRRPDVYVDDMGKVLVDFEAKFRPRVPLGIRRTPVLVTLGLTADAKVVLVDPTAREE 192
Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
+T++ I + + ++LA + L+ L +
Sbjct: 193 LILTGGRVLLGLTNTSEICCLYTTGLSVPIQCSSLSRCIHLANSKAKSLVSLINWALE 250
>gi|308477282|ref|XP_003100855.1| hypothetical protein CRE_16179 [Caenorhabditis remanei]
gi|308264429|gb|EFP08382.1| hypothetical protein CRE_16179 [Caenorhabditis remanei]
Length = 185
Score = 39.4 bits (90), Expect = 0.38, Method: Composition-based stats.
Identities = 10/34 (29%), Positives = 16/34 (47%)
Query: 6 RQENQMREISLTRRVSKYAEGSCLVKFGDTHLLT 39
R E R + + V +GS +FG+T +L
Sbjct: 31 RSETTFRPLCVKCGVFGAQDGSGYAEFGNTRVLA 64
>gi|294873385|ref|XP_002766601.1| Exosome complex exonuclease RRP45, putative [Perkinsus marinus ATCC
50983]
gi|239867633|gb|EEQ99318.1| Exosome complex exonuclease RRP45, putative [Perkinsus marinus ATCC
50983]
Length = 418
Score = 39.4 bits (90), Expect = 0.40, Method: Composition-based stats.
Identities = 32/256 (12%), Positives = 63/256 (24%), Gaps = 32/256 (12%)
Query: 16 LTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGNRVK 75
++ A G G T + T + P R G ++ P + +
Sbjct: 16 FHTG-TRPALGQAECSIGKTRIRAVVTGQLTSPPSNRPR-EGRLSINVEAGPMAAPAVLP 73
Query: 76 REAVS----GRQGGRSQEIQRMIGRALRSV--------VDLSALGSRQIIIDCDVIQADG 123
S Q + + R L+ S ++ +D V+ +G
Sbjct: 74 SGNSSGLVGSAQTPEGISLCNQLERMLKGSNAVDVEALCIQSGSLVWELRLDVHVLSDNG 133
Query: 124 GTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVL--------KGHVAAISCGMLCGYPIV 175
AA + VAL + N + + ++ +
Sbjct: 134 NVGDAAAIASTVALRHYRRAEVSVVNGEIIYKPDLDPIPLSVHHMPIPVTFASIPSSLGE 193
Query: 176 DL--------DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRI 227
+ VM G + S + + LA R+
Sbjct: 194 NPLLLADPSSLEESLQGDGGQLVVVMNQYGELCGALKSGGASLMLHRDLMPAIRLATARV 253
Query: 228 ADLIKLQKD--VISNE 241
++ L + I
Sbjct: 254 KEVTALIDEKLAIDEH 269
>gi|302891493|ref|XP_003044628.1| predicted protein [Nectria haematococca mpVI 77-13-4]
gi|256725553|gb|EEU38915.1| predicted protein [Nectria haematococca mpVI 77-13-4]
Length = 283
Score = 39.4 bits (90), Expect = 0.40, Method: Composition-based stats.
Identities = 18/120 (15%), Positives = 36/120 (30%), Gaps = 15/120 (12%)
Query: 6 RQENQMREISLTRRVSKYAEGSCLVKFGDTH---------LLTTATLEEKVPMWIRNTKH 56
R N +R L V+ A GS ++ ++ L T +P + H
Sbjct: 31 RPPNGVRSQYLRTGVTASASGSAYLEI-ESQDASGSKGMKLTCTVHGPRSLPRSAPFSPH 89
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
++ P +T R +++ + ALR + + +
Sbjct: 90 MVLSTHVKYAPFATRQRRGYLR-----DASERDLSSHLEAALRGALIADRWPKSGVDVIV 144
>gi|50427219|ref|XP_462222.1| DEHA2G15620p [Debaryomyces hansenii CBS767]
gi|49657892|emb|CAG90716.1| DEHA2G15620p [Debaryomyces hansenii]
Length = 347
Score = 39.4 bits (90), Expect = 0.41, Method: Composition-based stats.
Identities = 12/49 (24%), Positives = 23/49 (46%), Gaps = 5/49 (10%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEG-----SCLVKFGDTHLLTTATLE 44
+R R N+ + + ++ + EG S +VK G+T ++ TL
Sbjct: 32 LRPCLRNFNEFKPLEVSTGNLQELEGNFTVGSSIVKNGNTTVICGITLG 80
>gi|115504329|ref|XP_001218957.1| RNasePH-like protein; exosome-associated protein 1; Rrp42
homologue [Trypanosoma brucei]
gi|83642439|emb|CAJ16398.1| RNasePH-like protein; exosome-associated protein 1; Rrp42
homologue [Trypanosoma brucei brucei strain 927/4
GUTat10.1]
Length = 397
Score = 39.4 bits (90), Expect = 0.42, Method: Composition-based stats.
Identities = 10/45 (22%), Positives = 15/45 (33%), Gaps = 3/45 (6%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAE---GSCLVKFGDTHLLTTAT 42
+R GR Q R ++ S V T ++ AT
Sbjct: 23 VRSDGRSLTQRRPFTVVTNRGSTTHFEGSSVEVHCDGTTVVAAAT 67
>gi|319411528|emb|CBQ73572.1| conserved hypothetical protein [Sporisorium reilianum]
Length = 332
Score = 39.4 bits (90), Expect = 0.42, Method: Composition-based stats.
Identities = 9/61 (14%), Positives = 20/61 (32%)
Query: 8 ENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLP 67
+R +S ++ S FG H++ + + +V + T + Y
Sbjct: 14 PTALRPLSADLGTLARSDASASFSFGPVHVVASVSGPTEVRIRDELTDRATLDVIYQPQH 73
Query: 68 R 68
Sbjct: 74 G 74
>gi|66362500|ref|XP_628216.1| RPR45-like archaeo-eukaryotic exosomal RNAse PH [Cryptosporidium
parvum Iowa II]
gi|46229700|gb|EAK90518.1| RPR45-like archaeo-eukaryotic exosomal RNAse PH [Cryptosporidium
parvum Iowa II]
gi|323509167|dbj|BAJ77476.1| cgd7_230 [Cryptosporidium parvum]
Length = 291
Score = 39.4 bits (90), Expect = 0.43, Method: Composition-based stats.
Identities = 34/264 (12%), Positives = 69/264 (26%), Gaps = 32/264 (12%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAE-GSCLVKFGDTHLLTTA------TLEEKVPMWIRN 53
+R GR+ R L + G+ V+ G++ + T ++
Sbjct: 23 VRCDGRKPEVCRNFKLELNELSSSNYGAVSVRIGNSSYIACCSPQIIHTGLDQESNNAIT 82
Query: 54 TKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQII 113
++ E + TGN VS + + + A + L I
Sbjct: 83 NTRINVSLELPTICGFTGNPNHSNFVSNSITECLNDSRIINKEAFITKFQGKELHWLIDI 142
Query: 114 IDCDVIQADGGTRTAAITG----AWVALHDCLQHMEDCSNKFQLSQVLKGHVA------- 162
+ I L L +D + S +
Sbjct: 143 KVVCLSYDGNPLDYTLIASIASLRNTILPKNLVWDDDYNWFRISSDPISKDEVKREQMMQ 202
Query: 163 -AISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSG-HIVEVQGSAERATFS-------- 212
+ S + V Y DS D N++ G + + T
Sbjct: 203 DSSSFFLKKVPIFVSFSYLNDSIWVCDPNYMEDSIGSSVTICCVDNQINTLQTQCISKYT 262
Query: 213 ----QDHFFAMLNLAKDRIADLIK 232
+ + ++++A R ++
Sbjct: 263 PGKLKSNLSQLIDVASKRADEIRA 286
>gi|238599743|ref|XP_002394962.1| hypothetical protein MPER_05068 [Moniliophthora perniciosa FA553]
gi|215464853|gb|EEB95892.1| hypothetical protein MPER_05068 [Moniliophthora perniciosa FA553]
Length = 94
Score = 39.4 bits (90), Expect = 0.46, Method: Composition-based stats.
Identities = 18/73 (24%), Positives = 26/73 (35%), Gaps = 6/73 (8%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAE-GSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWI 59
+RL GR +MR T AE G+ G T +L + V G I
Sbjct: 22 LRLDGRLPFEMR----TPDFIFSAELGTVECALGKTRVLANVDA-KMVKPPPERPFEGLI 76
Query: 60 TAEYGMLPRSTGN 72
T + P ++
Sbjct: 77 TIHSEISPMASSE 89
>gi|90085152|dbj|BAE91317.1| unnamed protein product [Macaca fascicularis]
Length = 250
Score = 39.4 bits (90), Expect = 0.47, Method: Composition-based stats.
Identities = 14/81 (17%), Positives = 30/81 (37%), Gaps = 1/81 (1%)
Query: 161 VAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAML 220
+ + Y +VD + E+ +D M I +Q S +D
Sbjct: 4 CVSFTFFQQGTYLLVDPNEREERVMDGLLVIAMNKHREICTIQSSGGIMLL-KDQVLRCS 62
Query: 221 NLAKDRIADLIKLQKDVISNE 241
+A ++A++ +L + N+
Sbjct: 63 KIAGVKVAEITELILKALEND 83
>gi|71746002|ref|XP_822231.1| ribosomal RNA processing protein [Leishmania major strain Friedlin]
gi|321438170|emb|CBZ11922.1| putative ribosomal RNA processing protein [Leishmania major strain
Friedlin]
Length = 324
Score = 39.4 bits (90), Expect = 0.47, Method: Composition-based stats.
Identities = 22/150 (14%), Positives = 44/150 (29%), Gaps = 5/150 (3%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWI-RNTKHGWI 59
+R GR ++R + +GS G T ++ +
Sbjct: 6 VRRDGRTALELRGKEMKLSDMTTFDGSSWYAQGQTAVMVSIHGPTIAKNDEYDTCIVQVR 65
Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRSQEI----QRMIGRALRSVVDLSALGSRQIIID 115
G+L + G K + ++ ++ L +V +++D
Sbjct: 66 IQHAGVLAPAAGGAEKALYEERKLELLTRTDALALGSLLESTLNAVFLRERFPRCVLVVD 125
Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHME 145
V++ DG A+ AL D
Sbjct: 126 VIVVRDDGSLPAVALNAVMSALLDAGLPCR 155
>gi|313217648|emb|CBY38696.1| unnamed protein product [Oikopleura dioica]
gi|313233490|emb|CBY09662.1| unnamed protein product [Oikopleura dioica]
Length = 224
Score = 39.4 bits (90), Expect = 0.48, Method: Composition-based stats.
Identities = 28/138 (20%), Positives = 49/138 (35%), Gaps = 6/138 (4%)
Query: 20 VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGNRVKREAV 79
V K A GS V++ ++ + + + G + + + +R R A
Sbjct: 40 VIKNANGSSYVEYNGAKVMVACIGPKDLAKREDFSLSGLLKI--ELSYCAFASRASRRAP 97
Query: 80 SGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA---DGGTRTAAITGAWVA 136
S + +E ++I AL+SV+ L QI + VI + T A +T +A
Sbjct: 98 S-KTTEEEKEQAQIIEEALKSVILLKRYPKSQIDMRVQVICEGLAETTTMAAIVTACGLA 156
Query: 137 LHDCLQHMEDCSNKFQLS 154
D M
Sbjct: 157 AADAGLDMYGVVIGAATM 174
>gi|149246481|ref|XP_001527695.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL
YB-4239]
gi|146447649|gb|EDK42037.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL
YB-4239]
Length = 308
Score = 39.4 bits (90), Expect = 0.48, Method: Composition-based stats.
Identities = 19/243 (7%), Positives = 64/243 (26%), Gaps = 25/243 (10%)
Query: 19 RVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG------- 71
+ + + GS ++ G T + + + + + + ++
Sbjct: 59 GIIQNSNGSAYLEIGRTIIEVSVFGPKPIRGSFIDKATLSVETKFLPHVLQPCGDLFNNN 118
Query: 72 ------NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIII-------DCDV 118
N ++A I + + + L I I D
Sbjct: 119 SIDNALNNKHQQAQGTGMSAIEHRISSYVENCILPSIILEKYPKSTIDIQISVISLDEQE 178
Query: 119 IQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLD 178
++ + + + + S + + +
Sbjct: 179 VRNNESGLLWLLHWITICTSMAVLDTGLEVRDIVSSGCVNFTKLGNILVGGGHSASFNAE 238
Query: 179 YGEDSTIDVDANFVMTDSGHIVEVQGS-AERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
+D + +F+ + IV + ++ S++ +++ + KL +
Sbjct: 239 NDDDRVVSALFSFMNMKNDEIVGLWIEGGDKVELSEEKLTKLID----ECCKMSKLIRAN 294
Query: 238 ISN 240
+++
Sbjct: 295 LNS 297
>gi|85112835|ref|XP_964421.1| hypothetical protein NCU03268 [Neurospora crassa OR74A]
gi|28926202|gb|EAA35185.1| predicted protein [Neurospora crassa OR74A]
Length = 251
Score = 39.4 bits (90), Expect = 0.48, Method: Composition-based stats.
Identities = 18/219 (8%), Positives = 52/219 (23%), Gaps = 14/219 (6%)
Query: 19 RVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGNRVKREA 78
A+GS + + + + + + G R +
Sbjct: 11 NALPRADGSARYSYAGYTVTASVNGPIEAQRRDEHAYEAHVDVIVRPSAGVGGTRERHLE 70
Query: 79 VSGRQG-GRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGA-WVA 136
+ + ++ ++ V+ + + + V + A+ +A
Sbjct: 71 FILQSSLSQIILVKNFPRSVIQIVLQVESTPENAYVNTKLVQASLNLPIIPALFQTAVLA 130
Query: 137 LHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDS 196
L M+ + V A+ + D + T
Sbjct: 131 LLSAAVPMKATA---------TSTVVAVVSDDGSKKIVADPSPQDIREATSLHVLAFTSH 181
Query: 197 GHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
++ + + F+ + + A+ Q
Sbjct: 182 DELLLSESEGD---FTVKEWDGVYENAQKICCQTASKQD 217
>gi|223997282|ref|XP_002288314.1| predicted protein [Thalassiosira pseudonana CCMP1335]
gi|220975422|gb|EED93750.1| predicted protein [Thalassiosira pseudonana CCMP1335]
Length = 576
Score = 39.1 bits (89), Expect = 0.53, Method: Composition-based stats.
Identities = 16/74 (21%), Positives = 25/74 (33%), Gaps = 6/74 (8%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAE--GSCLVKFGD-THLLTTATLEEKVPMWIRNTKHG 57
+RL GRQ ++ R I L+ C V+ G+ T + E P G
Sbjct: 36 LRLDGRQPSESRPIRLSF---SRCHNRSECTVQLGNGTRSAASVRAELVPPPNADRPNDG 92
Query: 58 WITAEYGMLPRSTG 71
+ + P
Sbjct: 93 QVKFGVEVGPMGCM 106
>gi|254571439|ref|XP_002492829.1| Protein involved in rRNA processing [Pichia pastoris GS115]
gi|238032627|emb|CAY70650.1| Protein involved in rRNA processing [Pichia pastoris GS115]
gi|328353162|emb|CCA39560.1| exosome complex component RRP43 [Pichia pastoris CBS 7435]
Length = 368
Score = 39.1 bits (89), Expect = 0.54, Method: Composition-based stats.
Identities = 14/85 (16%), Positives = 27/85 (31%), Gaps = 10/85 (11%)
Query: 1 MRLSGRQENQMREISL---------TRRVSKY-AEGSCLVKFGDTHLLTTATLEEKVPMW 50
+R + R+ + R + + +K GS +VK G T ++ T
Sbjct: 33 IRPNLRKYEEFRSVQVNNKGFGRYDESNPTKSSVLGSSVVKVGKTTVICAITGGIVSDDD 92
Query: 51 IRNTKHGWITAEYGMLPRSTGNRVK 75
I + + P R +
Sbjct: 93 ILDQATTSSNPFATVYPLVEIARGR 117
>gi|207093020|ref|ZP_03240807.1| polynucleotide phosphorylase/polyadenylase [Helicobacter pylori
HPKX_438_AG0C1]
Length = 102
Score = 39.1 bits (89), Expect = 0.56, Method: Composition-based stats.
Identities = 19/89 (21%), Positives = 30/89 (33%), Gaps = 9/89 (10%)
Query: 20 VSKYAEGSCLVKFGDTHLLTTATLEEKV---PMWIRNTKHGWITAEYGMLPRSTGNRVKR 76
V+K A S L + G T +L + +E + + + G +P R
Sbjct: 20 VAKQATSSLLYRLGKTIILASVCVEREPVSEDFLPLVVQFLEKSYAAGKIPGGFVKR--- 76
Query: 77 EAVSGRQGGRSQEIQRMIGRALRSVVDLS 105
GR R+I R LR +
Sbjct: 77 ---EGRAQDFEILTSRLIDRTLRPLFPKD 102
>gi|303390675|ref|XP_003073568.1| ribonuclease [Encephalitozoon intestinalis ATCC 50506]
gi|303302715|gb|ADM12208.1| ribonuclease [Encephalitozoon intestinalis ATCC 50506]
Length = 209
Score = 39.1 bits (89), Expect = 0.60, Method: Composition-based stats.
Identities = 11/47 (23%), Positives = 21/47 (44%), Gaps = 1/47 (2%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKV 47
R GR+ ++R + RR+ EG ++ G+T + +V
Sbjct: 8 FREDGRKPKELRRVEARRRMVGD-EGIVEIRQGNTQVSAACRGSREV 53
>gi|253742831|gb|EES99498.1| Exosome complex exonuclease, putative [Giardia intestinalis ATCC
50581]
Length = 315
Score = 39.1 bits (89), Expect = 0.62, Method: Composition-based stats.
Identities = 12/36 (33%), Positives = 20/36 (55%), Gaps = 3/36 (8%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHL 37
R+ GR + R+I+L+ + GS LV+ G T +
Sbjct: 16 RIDGRGIGETRDIALSF-FTTR--GSVLVEKGKTKV 48
>gi|62733251|gb|AAX95368.1| 3' exoribonuclease family, domain 2, putative [Oryza sativa
Japonica Group]
gi|62734006|gb|AAX96115.1| 3' exoribonuclease family, domain 2, putative [Oryza sativa
Japonica Group]
Length = 129
Score = 39.1 bits (89), Expect = 0.63, Method: Composition-based stats.
Identities = 19/94 (20%), Positives = 37/94 (39%), Gaps = 1/94 (1%)
Query: 141 LQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIV 200
+ + N+ + + +++C + + D E+S I+ V+ S IV
Sbjct: 24 GKAKYELVNREKRKLTITNVPFSLTCALHKDNVLADPTAEEESIIETSVTIVLDSSDQIV 83
Query: 201 EVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
+Q T S ++LAKDR L ++
Sbjct: 84 SIQKPGGAVT-SMTTIKECISLAKDRRRKLREIL 116
>gi|310793767|gb|EFQ29228.1| exosome complex subunit Rrp46 [Glomerella graminicola M1.001]
Length = 243
Score = 38.7 bits (88), Expect = 0.63, Method: Composition-based stats.
Identities = 20/217 (9%), Positives = 52/217 (23%), Gaps = 20/217 (9%)
Query: 21 SKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGNRVKREAVS 80
A+GS G ++++ +V N + G ++
Sbjct: 14 LPRADGSATFSRGGYCVVSSVNGPMEVQRRDENPFESVVDVVVRPAAGVGGTGERQ---- 69
Query: 81 GRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAA--ITGAWVALH 138
++ ++ ALR ++ + I I V + + +
Sbjct: 70 ---------LENILQSALRQLIPVKNFPRCLIQITLQVTETPQNDYANSKVVQAQSSLTL 120
Query: 139 DCLQHMEDCSNKFQLSQVLKGHVAAISCG--MLCGYPIVDLDYGEDSTIDVDANFVMTDS 196
+ + LK + I D E T
Sbjct: 121 LPALFHSAVLSLLSAAVPLKAIATCTTLAILEDGSKIIADPSPLEADHAKSLHVLSFTSQ 180
Query: 197 GHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
++ + F+ + +++ + +
Sbjct: 181 DDLLLAES---EGAFTIAEWDKVVSTGQKVCGQHREA 214
>gi|156088851|ref|XP_001611832.1| hypothetical protein [Babesia bovis T2Bo]
gi|154799086|gb|EDO08264.1| hypothetical protein BBOV_III007030 [Babesia bovis]
Length = 374
Score = 38.7 bits (88), Expect = 0.63, Method: Composition-based stats.
Identities = 10/55 (18%), Positives = 23/55 (41%), Gaps = 13/55 (23%)
Query: 1 MRLSGRQENQMREISLT--------RRVSKYAEGSCL----VKFGDTHLLTTATL 43
+R GR+ R +S++ + + +G+ + + GDTH+ +
Sbjct: 36 VRPDGRKLRAFRTVSVSDLEGRYTPPNLLEG-DGAVISSTRLTLGDTHVYCSVKA 89
>gi|209881309|ref|XP_002142093.1| 3' exoribonuclease family protein [Cryptosporidium muris RN66]
gi|209557699|gb|EEA07744.1| 3' exoribonuclease family protein, putative [Cryptosporidium muris
RN66]
Length = 287
Score = 38.7 bits (88), Expect = 0.64, Method: Composition-based stats.
Identities = 25/174 (14%), Positives = 52/174 (29%), Gaps = 6/174 (3%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+R GR R I + + + S +K G++ + +T K+ ++
Sbjct: 23 IRPDGRTSEISRSICIQKNTIPNYDCSVSIKAGNSSYMAGST--NKIAANESDSDIQRRI 80
Query: 61 AEYGMLP---RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
P T + + ++ + + + L S V+ + I ID
Sbjct: 81 IVNIDFPKVCGLTVSTNQSIYIANTIMECLNDTRILNKDLLYSKVNDKDIF-WVIYIDIV 139
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG 171
+ DG A +L D +K + ++ G
Sbjct: 140 CLSYDGNALDYCFLAAVASLIDTNIPKNIEWDKEYSWYRISSDNISLEPGENIY 193
>gi|296413553|ref|XP_002836475.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295630299|emb|CAZ80666.1| unnamed protein product [Tuber melanosporum]
Length = 336
Score = 38.7 bits (88), Expect = 0.72, Method: Composition-based stats.
Identities = 22/119 (18%), Positives = 41/119 (34%), Gaps = 12/119 (10%)
Query: 6 RQENQMREISLTRRVSKYAEGSCLVKF-----GDT---HLLTTATLEEKVPMWIRNTKHG 57
R +R+I L ++ A GS ++ T L ++ +P + +
Sbjct: 31 RSPTTLRKIFLKTGLTPPATGSAFLELPTPSTHSTPTLKLTSSVYGPRPLPSSTTFSSNA 90
Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
+TAE P ST R + G +++ + AL V + I +
Sbjct: 91 RLTAELKFSPFSTPGRRRGYIR----DGVERDLSAQLSIALGKSVAVGKYPKSAIDVFV 145
>gi|330942981|ref|XP_003306185.1| hypothetical protein PTT_19268 [Pyrenophora teres f. teres 0-1]
gi|311316418|gb|EFQ85727.1| hypothetical protein PTT_19268 [Pyrenophora teres f. teres 0-1]
Length = 366
Score = 38.7 bits (88), Expect = 0.72, Method: Composition-based stats.
Identities = 12/54 (22%), Positives = 16/54 (29%), Gaps = 6/54 (11%)
Query: 1 MRLS---GRQENQMREISLTRRVSKYAEGSCLVKFGD-THLLTTATLEEKVPMW 50
+RL G R + V A GS + D T L E +
Sbjct: 28 IRLDVTKG--PRDFRSMRAEYDVLPTANGSARIALEDGTEALVGVKAEVERSRQ 79
>gi|189189548|ref|XP_001931113.1| conserved hypothetical protein [Pyrenophora tritici-repentis
Pt-1C-BFP]
gi|187972719|gb|EDU40218.1| conserved hypothetical protein [Pyrenophora tritici-repentis
Pt-1C-BFP]
Length = 368
Score = 38.7 bits (88), Expect = 0.72, Method: Composition-based stats.
Identities = 12/54 (22%), Positives = 16/54 (29%), Gaps = 6/54 (11%)
Query: 1 MRLS---GRQENQMREISLTRRVSKYAEGSCLVKFGD-THLLTTATLEEKVPMW 50
+RL G R + V A GS + D T L E +
Sbjct: 28 IRLDVTKG--PRDFRSMRAEYDVLPTANGSARIALEDGTEALVGVKAEVERSRQ 79
>gi|71031797|ref|XP_765540.1| exosome complex exonuclease Rrp45 [Theileria parva strain Muguga]
gi|68352497|gb|EAN33257.1| exosome complex exonuclease rrp45, putative [Theileria parva]
Length = 276
Score = 38.7 bits (88), Expect = 0.78, Method: Composition-based stats.
Identities = 27/248 (10%), Positives = 77/248 (31%), Gaps = 31/248 (12%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+R+ GR + +S+ G+ L+ FG+T + T + +E V G++
Sbjct: 32 LRIDGRSLDSHVYVSIDFDGPP---GTSLISFGNTVVFTCIS-QEIVEPNSERPNEGFLF 87
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRA---LRSVVDLSALGSRQIIIDCD 117
P ++ + + + L ++ S + +
Sbjct: 88 FNVETSPFTSESYEPGKTTDQEHNLIYFLENMFKESSCLDLETLCITSGKQVWALRVYVH 147
Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCS-----------------------NKFQLS 154
V+Q DG +A A +L + + + S +
Sbjct: 148 VLQDDGNLLSACSLSALASLLHYRKPLMELSDELNHSFYGLWHKGTPLNIYHVPMFVTVW 207
Query: 155 QVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQD 214
+ + + + +++ + E+ + + + G ++ + + +
Sbjct: 208 LLEAPDHSLLDHNLSEYKFVLEPNSFEEKLLKTQVSILFNQFGEVLWIYKNG-STPVPLE 266
Query: 215 HFFAMLNL 222
F + +++
Sbjct: 267 TFESAISV 274
>gi|123419905|ref|XP_001305647.1| hypothetical protein [Trichomonas vaginalis G3]
gi|121887178|gb|EAX92717.1| hypothetical protein TVAG_220800 [Trichomonas vaginalis G3]
Length = 262
Score = 38.7 bits (88), Expect = 0.81, Method: Composition-based stats.
Identities = 13/39 (33%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTT 40
R GR N R I +T + K + S L+ G T ++ T
Sbjct: 20 RNDGRSFNDSRPIRITEKCFKDGQSSSLISLGKT-IIAT 57
>gi|219129727|ref|XP_002185033.1| ribosomal RNA processing protein [Phaeodactylum tricornutum CCAP
1055/1]
gi|217403528|gb|EEC43480.1| ribosomal RNA processing protein [Phaeodactylum tricornutum CCAP
1055/1]
Length = 354
Score = 38.7 bits (88), Expect = 0.82, Method: Composition-based stats.
Identities = 19/221 (8%), Positives = 51/221 (23%), Gaps = 32/221 (14%)
Query: 2 RLSGRQENQMREISLTR-RVSKYAE-------------GSCL-----------VKFGDTH 36
R+ GR ++ R + + + GS V H
Sbjct: 25 RVDGRGRDEYRGYRIVTEGSMSHEDNSSTSNPPLILSNGSARLFEAARHAHEDVSL---H 81
Query: 37 LLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGR 96
+L + E P + + + ++ ++ ++ ++
Sbjct: 82 MLCSVKAEVVHPSALHPAQGAMELHVESLTSSGPNSQRRKTQDELEATLSKLLMRDLVDL 141
Query: 97 ALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQV 156
+V + D+ G+ ++ A + +
Sbjct: 142 EALCIVPYH----YVWRLHVDLFVLTAGSSHGSLCDAASHVIRAALQCTRLPAITSSTAT 197
Query: 157 LKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSG 197
++ + G + +D D G
Sbjct: 198 ANESHNGLAKASFRNKNPLFPHGGVELMVDGDLAVASPPPG 238
>gi|219856000|ref|YP_002473122.1| hypothetical protein CKR_2657 [Clostridium kluyveri NBRC 12016]
gi|219569724|dbj|BAH07708.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
Length = 430
Score = 38.3 bits (87), Expect = 0.93, Method: Composition-based stats.
Identities = 12/68 (17%), Positives = 29/68 (42%)
Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
I+ I E+Q S+++ TFS ++ ++ A ++ ++ +
Sbjct: 98 IETIQHGEAGQMIESLLKAKNNLKNLISEIQKSSKKVTFSSENLNNVIVQASTQVNEINE 157
Query: 233 LQKDVISN 240
K++IS+
Sbjct: 158 GIKELISD 165
>gi|153955621|ref|YP_001396386.1| methyl-accepting transducer [Clostridium kluyveri DSM 555]
gi|146348479|gb|EDK35015.1| Predicted methyl-accepting transducer [Clostridium kluyveri DSM
555]
Length = 426
Score = 38.3 bits (87), Expect = 0.93, Method: Composition-based stats.
Identities = 12/68 (17%), Positives = 29/68 (42%)
Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
I+ I E+Q S+++ TFS ++ ++ A ++ ++ +
Sbjct: 94 IETIQHGEAGQMIESLLKAKNNLKNLISEIQKSSKKVTFSSENLNNVIVQASTQVNEINE 153
Query: 233 LQKDVISN 240
K++IS+
Sbjct: 154 GIKELISD 161
>gi|312212804|emb|CBX92887.1| similar to 3' exoribonuclease family protein (Rrp42)
[Leptosphaeria maculans]
Length = 363
Score = 38.3 bits (87), Expect = 1.1, Method: Composition-based stats.
Identities = 15/69 (21%), Positives = 21/69 (30%), Gaps = 8/69 (11%)
Query: 1 MRLS---GRQENQMREISLTRRVSKYAEGSCLVKFGD-THLLTTATLEEKVPMWIRNTKH 56
+RL G R + V A GS + D T L E V +++
Sbjct: 29 IRLDVTKG--PRDFRSMRAEYDVLPTANGSARIALEDGTEALVGVKAE--VDKSLQSPVL 84
Query: 57 GWITAEYGM 65
G M
Sbjct: 85 GDPAQNVRM 93
>gi|194686833|ref|XP_001789385.1| PREDICTED: protein phosphatase 1B-like [Bos taurus]
Length = 375
Score = 37.9 bits (86), Expect = 1.2, Method: Composition-based stats.
Identities = 26/201 (12%), Positives = 53/201 (26%), Gaps = 8/201 (3%)
Query: 21 SKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGNRVKREAVS 80
+ A GS +++ V + + + + + + E +
Sbjct: 180 IQNAGGSVMIQR--------VNGSLAVSRALGDYDYKCVDGKGPTEQLVSPEPEVYEILR 231
Query: 81 GRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVALHDC 140
+ I + + + SR + D + T +
Sbjct: 232 AEEDEFIILACDGIWDVMSNEELCEFVKSRLEVSDDLENVCNWVVDTCLHKVSCCIFFAS 291
Query: 141 LQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIV 200
L + Q+ + IS +L+ + V A DS H V
Sbjct: 292 LDELSTEILMVVSDQIWEVKSEMISSYGRKITLENELEAKVEEGPLVIAVVYAVDSDHFV 351
Query: 201 EVQGSAERATFSQDHFFAMLN 221
VQ + QD F ++
Sbjct: 352 MVQLQMRDVGWIQDIFRDKID 372
>gi|221484661|gb|EEE22955.1| exosome complex exonuclease rrp43, putative [Toxoplasma gondii
GT1]
gi|221504847|gb|EEE30512.1| exosome complex exonuclease, putative [Toxoplasma gondii VEG]
Length = 366
Score = 37.9 bits (86), Expect = 1.2, Method: Composition-based stats.
Identities = 10/44 (22%), Positives = 17/44 (38%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE 44
+R GR R+ ++ GS V+ G+ + L E
Sbjct: 35 VRSDGRYFLTYRQPRISSNTLTNCCGSASVRAGNNYYLAGVRGE 78
>gi|237839967|ref|XP_002369281.1| hypothetical protein, conserved [Toxoplasma gondii ME49]
gi|211966945|gb|EEB02141.1| hypothetical protein, conserved [Toxoplasma gondii ME49]
Length = 366
Score = 37.9 bits (86), Expect = 1.2, Method: Composition-based stats.
Identities = 10/44 (22%), Positives = 17/44 (38%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE 44
+R GR R+ ++ GS V+ G+ + L E
Sbjct: 35 VRSDGRYFLTYRQPRISSNTLTNCCGSASVRAGNNYYLAGVRGE 78
>gi|60677861|gb|AAX33437.1| RE29317p [Drosophila melanogaster]
Length = 261
Score = 37.9 bits (86), Expect = 1.2, Method: Composition-based stats.
Identities = 33/217 (15%), Positives = 67/217 (30%), Gaps = 12/217 (5%)
Query: 31 KFGDTHLLTTATLEEKVPM-WIRNTKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQE 89
++G+T +L +++ R G + STG+ R +
Sbjct: 2 EYGNTKVLAIVAPPKELIRASARRMNMGVLNCYVNFAAFSTGDLDSVP-------ERERH 54
Query: 90 IQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSN 149
+ M+ +A+ VV + + Q+ I ++ DG + AI VAL +C D
Sbjct: 55 LSSMLTKAMEPVVCRTEFLNFQLDIRVLILDDDGCLLSTAINCCGVALVECGISTYDLIT 114
Query: 150 KFQLSQVLKG----HVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGS 205
A + + S+ + ++
Sbjct: 115 ASTACIYRDHVFLNPSAKVEELLWKHRNSSTDSTTSPSSAQEHGLIITASMDTFEQIAQC 174
Query: 206 AERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNEV 242
+ S + +L+ L +L K V++ V
Sbjct: 175 QQCGYLSPATYVKLLDYTLAINKSLRELVKGVLTKRV 211
>gi|330877229|gb|EGH11378.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas syringae
pv. morsprunorum str. M302280PT]
Length = 71
Score = 37.9 bits (86), Expect = 1.2, Method: Composition-based stats.
Identities = 8/37 (21%), Positives = 17/37 (45%), Gaps = 2/37 (5%)
Query: 14 ISLTRR-VSKYAEGSCLVKFGDTH-LLTTATLEEKVP 48
++L +++ A G+ LV D +L T ++
Sbjct: 15 VTLETGRIARQASGAVLVTVDDDVSVLVTVVGAKQAD 51
>gi|260944050|ref|XP_002616323.1| hypothetical protein CLUG_03564 [Clavispora lusitaniae ATCC
42720]
gi|238849972|gb|EEQ39436.1| hypothetical protein CLUG_03564 [Clavispora lusitaniae ATCC
42720]
Length = 355
Score = 37.9 bits (86), Expect = 1.2, Method: Composition-based stats.
Identities = 12/57 (21%), Positives = 19/57 (33%), Gaps = 5/57 (8%)
Query: 1 MRLSGRQENQMREISLTRRVSKY-----AEGSCLVKFGDTHLLTTATLEEKVPMWIR 52
+R R + R + + GS VK G+TH+L T+
Sbjct: 32 LRPCLRGFEEFRPLLASPGTLNSYGPNIVVGSSTVKNGNTHILCEITMGITESSGPD 88
>gi|194694796|gb|ACF81482.1| unknown [Zea mays]
Length = 218
Score = 37.9 bits (86), Expect = 1.2, Method: Composition-based stats.
Identities = 17/79 (21%), Positives = 32/79 (40%), Gaps = 1/79 (1%)
Query: 161 VAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAML 220
+++C + + D E+S I+ V+ S +V +Q T +
Sbjct: 133 PLSLTCALHKDEILADPTSEEESIIETYVTVVVDSSDRLVSLQKLGGAVTC-MATIKECI 191
Query: 221 NLAKDRIADLIKLQKDVIS 239
+LAK+R L ++ D I
Sbjct: 192 SLAKERRRSLREILLDSIK 210
>gi|325115026|emb|CBZ50582.1| putative 3' exoribonuclease [Neospora caninum Liverpool]
Length = 214
Score = 37.9 bits (86), Expect = 1.3, Method: Composition-based stats.
Identities = 36/196 (18%), Positives = 59/196 (30%), Gaps = 7/196 (3%)
Query: 11 MREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRST 70
MR + L A GS V G T L + G I E+ P +T
Sbjct: 1 MRTMCLQTHSLAGATGSAFVSVGKTKLNCAVYGPR-PNTKAASQDRGSINLEFKYAPFAT 59
Query: 71 GNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAI 130
+ + + + + ++ +A+ +VV L I + V++ DGG +AA+
Sbjct: 60 TS-----KGACNERDSAHLVT-LLHQAVNAVVRLDLYRKSTIAVSVLVLEDDGGVISAAL 113
Query: 131 TGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDAN 190
T +AL D M D V + P D V
Sbjct: 114 TCIGLALADAGIEMLDVLTGASGCAVALEQPDGPPRICVLLDPDADERRAFADKCTVVDL 173
Query: 191 FVMTDSGHIVEVQGSA 206
+ +
Sbjct: 174 GYCPAQSSACFIHATG 189
>gi|19074289|ref|NP_585795.1| similarity to HYPOTHETICAL PROTEIN OF THE RNASE PH FAMILY
YBX3_SCHPO [Encephalitozoon cuniculi GB-M1]
gi|19068931|emb|CAD25399.1| similarity to HYPOTHETICAL PROTEIN OF THE RNASE PH FAMILY
YBX3_SCHPO [Encephalitozoon cuniculi GB-M1]
Length = 218
Score = 37.9 bits (86), Expect = 1.3, Method: Composition-based stats.
Identities = 28/232 (12%), Positives = 67/232 (28%), Gaps = 35/232 (15%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R R+ + R + + R SCLV G + LL T + +I G ++
Sbjct: 12 RFDNRKIEEARRLEVER--ISN---SCLVTMGASQLL-TVFQKSTSRPYIDRPHEGIVSF 65
Query: 62 EYGMLPRSTGN---RVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDV 118
+ + + + + R+ + +
Sbjct: 66 SVSTGAKKYERLVNFLHKVYIKQKSIDLESLCIRLNEEVVLIHI---------------- 109
Query: 119 IQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLD 178
R + G+ +L + + +++ V + G+ + D
Sbjct: 110 -----DLRVLSGDGSIYSLAISGVNSVLEALGVRMNYVPQCFFYCSIGGV----VVTDPS 160
Query: 179 YGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADL 230
E + D +M +V ++ + + + AKD + ++
Sbjct: 161 EDEQNKGDWSCVVIMKSPKEVVLLEKMGRECSV-EAVLETVYKSAKDSVVEV 211
>gi|116855852|gb|ABK30462.1| ribonuclease PH [Legionella pneumophila]
Length = 30
Score = 37.9 bits (86), Expect = 1.3, Method: Composition-based stats.
Identities = 11/29 (37%), Positives = 19/29 (65%)
Query: 209 ATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
+FS++ ML+LA+ I LI++QK+
Sbjct: 2 NSFSREQLNNMLSLAEIGIPQLIEIQKNA 30
>gi|331231511|ref|XP_003328419.1| hypothetical protein PGTG_09713 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|309307409|gb|EFP84000.1| hypothetical protein PGTG_09713 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 429
Score = 37.9 bits (86), Expect = 1.3, Method: Composition-based stats.
Identities = 13/57 (22%), Positives = 21/57 (36%), Gaps = 6/57 (10%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGD------THLLTTATLEEKVPMWI 51
+R GR R I+L VS + GS + T ++ LE + +
Sbjct: 133 IRADGRTPFSYRPINLIDEVSLQSNGSARCQLKTSSENIITDVIVGCKLEVEQRDFD 189
>gi|255716180|ref|XP_002554371.1| KLTH0F03718p [Lachancea thermotolerans]
gi|238935754|emb|CAR23934.1| KLTH0F03718p [Lachancea thermotolerans]
Length = 379
Score = 37.9 bits (86), Expect = 1.3, Method: Composition-based stats.
Identities = 39/239 (16%), Positives = 71/239 (29%), Gaps = 20/239 (8%)
Query: 1 MRLSGRQENQMREISLTRR---VSKYAE---------GSCLVKFGDTHLLTTATL---EE 45
+R S R + R + ++ + A+ GS ++K G T ++T+ T EE
Sbjct: 34 LRPSLRSFEEFRNVEISDGGLSFASNADIDRKGNNILGSNVLKCGKTMVVTSITGGIVEE 93
Query: 46 KVPMWIRNTKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLS 105
+ + + + L R E GR G + E + R V+
Sbjct: 94 NISGSRVDDESTESSNRADRLSRFAQVHPVVEVERGRVGAPTDEEMTLSQRLRDCVLHSG 153
Query: 106 ALGSRQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAIS 165
+ + +D V + + + + K+ K V +
Sbjct: 154 LIPKKA--LDVAVGIRSTDSEGISSILYPDEEENTISSGLKSRRKWSYVLYAKIQVFS-R 210
Query: 166 CGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATF--SQDHFFAMLNL 222
G L L Y +T A + + V ATF + D
Sbjct: 211 DGPLFEICWNSLIYALKTTQLPRAFVDERTADLKIPVSMRGRSATFRETFDIICDASKF 269
>gi|312095655|ref|XP_003148426.1| hypothetical protein LOAG_12866 [Loa loa]
gi|307756410|gb|EFO15644.1| hypothetical protein LOAG_12866 [Loa loa]
Length = 276
Score = 37.9 bits (86), Expect = 1.4, Method: Composition-based stats.
Identities = 20/244 (8%), Positives = 51/244 (20%), Gaps = 11/244 (4%)
Query: 3 LSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTA------TLEEKVPMWIRNTKH 56
GR ++ R I L V+ + GS + G + + + M I
Sbjct: 25 PDGRSISRFRPIMLRMGVNGRSAGSSFARQGGATVTCNIEALLAPVSDAPIIMPIIQAAP 84
Query: 57 GWITAEYGMLPRSTGN--RVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIII 114
+ ++ + + A+
Sbjct: 85 NIPKNLVEDAMVMVNQLVAQNAFCTKDALKTAGGRLTWLLNLHIMILNVDGAICDALCTC 144
Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQH-MEDCSNKFQLSQVLKGHVAAISCGMLCGYP 173
+ + + E + + +
Sbjct: 145 IAGALVDLRLPDVCTDCEEDIPIDINKVKLSETFHHIEIVDIPVSSTFIVYEPPNEEVKI 204
Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
+ D V+ ++ I + S ++ M+ +A R + +
Sbjct: 205 LCDPVSELFRVAPNTVMIVVGNNARIHRISQSGICG--DENTMRHMVEMAVGRQKVVAES 262
Query: 234 QKDV 237
Sbjct: 263 MLKA 266
>gi|157737634|ref|YP_001490317.1| HAD-superfamily hydrolase [Arcobacter butzleri RM4018]
gi|157699488|gb|ABV67648.1| HAD-superfamily hydrolase [Arcobacter butzleri RM4018]
Length = 667
Score = 37.5 bits (85), Expect = 1.4, Method: Composition-based stats.
Identities = 11/53 (20%), Positives = 23/53 (43%), Gaps = 3/53 (5%)
Query: 185 IDVDANFVMTDSGHIVEVQGSAE---RATFSQDHFFAMLNLAKDRIADLIKLQ 234
D+D T+ + +Q +++ + S++ L L+ +LIK Q
Sbjct: 13 FDMDGTMFDTEKLRMRMIQQASKQIFGESLSEEILTQCLGLSAKASEELIKKQ 65
>gi|269859975|ref|XP_002649711.1| hypothetical protein EBI_26050 [Enterocytozoon bieneusi H348]
gi|220066906|gb|EED44376.1| hypothetical protein EBI_26050 [Enterocytozoon bieneusi H348]
Length = 222
Score = 37.5 bits (85), Expect = 1.5, Method: Composition-based stats.
Identities = 9/45 (20%), Positives = 17/45 (37%), Gaps = 8/45 (17%)
Query: 2 RLSGRQENQMREISL----TRRVSKYAEGSCLVKFGDTHLLTTAT 42
R GR+ + R + ++K +V G + L+ T
Sbjct: 18 RCDGRKFEENRPLRCVTNNETGINKQ----VVVDNGQSKLIIGIT 58
>gi|169607985|ref|XP_001797412.1| hypothetical protein SNOG_07057 [Phaeosphaeria nodorum SN15]
gi|111064588|gb|EAT85708.1| hypothetical protein SNOG_07057 [Phaeosphaeria nodorum SN15]
Length = 356
Score = 37.5 bits (85), Expect = 1.7, Method: Composition-based stats.
Identities = 12/50 (24%), Positives = 16/50 (32%), Gaps = 6/50 (12%)
Query: 1 MRLS---GRQENQMREISLTRRVSKYAEGSCLVKFGD-THLLTTATLEEK 46
+RL G R + V A GS + D T L E +
Sbjct: 29 IRLDVTKG--PRDFRSMRAEYDVLPGANGSARIALEDGTEALVGVKAEVE 76
>gi|297704868|ref|XP_002829311.1| PREDICTED: exosome complex exonuclease RRP46-like [Pongo abelii]
Length = 232
Score = 37.5 bits (85), Expect = 1.8, Method: Composition-based stats.
Identities = 20/126 (15%), Positives = 32/126 (25%), Gaps = 13/126 (10%)
Query: 30 VKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQE 89
V GDT +L +V + R K + R +
Sbjct: 44 VSSGDTSVLAGVYGPAEV---------KVSKEIFNKATLEVILRPKIGLPGVAEKSRERL 94
Query: 90 IQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSN 149
I +VV + I + V+ G + A +AL D M
Sbjct: 95 ----IRNTCEAVVLGTLHPRTSITVVLQVVSDAGSLLACCLNAACMALVDAGVPMRALFC 150
Query: 150 KFQLSQ 155
+
Sbjct: 151 GVTCAL 156
>gi|322487849|emb|CBZ23093.1| putative ribosomal RNA processing protein [Leishmania mexicana
MHOM/GT/2001/U1103]
Length = 324
Score = 37.5 bits (85), Expect = 1.8, Method: Composition-based stats.
Identities = 23/149 (15%), Positives = 43/149 (28%), Gaps = 5/149 (3%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWI-RNTKHGWIT 60
R GR ++R + +GS G T ++ +
Sbjct: 7 RRDGRTALELRGKEMRLSDMTAFDGSSWYAQGQTAVMVSIHGPTIAKNDEYDTCIVQVRI 66
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEI----QRMIGRALRSVVDLSALGSRQIIIDC 116
G+L + G K + ++ ++ L +V +++D
Sbjct: 67 QHAGVLAPAAGGAEKALYEERKLELLTRTDALALGSLLESTLNAVFVRERFPRCVLVVDV 126
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHME 145
VI+ DG A+ AL D
Sbjct: 127 VVIRDDGSLPAVALNAVMSALLDAGLPCR 155
>gi|67624141|ref|XP_668353.1| exosome complex exonuclease RRP43 (Ribosomal RNA processing protein
43) [Cryptosporidium hominis TU502]
gi|54659558|gb|EAL38129.1| exosome complex exonuclease RRP43 (Ribosomal RNA processing protein
43) [Cryptosporidium hominis]
Length = 291
Score = 37.5 bits (85), Expect = 1.8, Method: Composition-based stats.
Identities = 34/264 (12%), Positives = 67/264 (25%), Gaps = 32/264 (12%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAE-GSCLVKFGDTHLLTTA------TLEEKVPMWIRN 53
+R GR+ R L + G+ V+ G + + T ++
Sbjct: 23 VRCDGRKPEVCRNFKLELNELSSSNYGAISVRIGKSSYIACCNPQIIHTGLDQESNNAIT 82
Query: 54 TKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQII 113
++ E + TGN VS + + + A + L I
Sbjct: 83 NTRINVSLELPTICGFTGNPNHSNFVSNSITECLNDSRIINKEAFITKFQGKELHWLIDI 142
Query: 114 IDCDVIQADGGTRTAAITG----AWVALHDCLQHMEDCSNKFQLSQVLKGHVA------- 162
+ I L L +D + S +
Sbjct: 143 KVVCLSYDGNPLDYTLIASIASLRNTILPKNLVWDDDYNWFRISSDPVSKDEVKREQMMQ 202
Query: 163 -AISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSG-HIVEVQGSAERATFSQD------ 214
+ S + V Y DS D N++ G + ++ T
Sbjct: 203 DSSSFFLKKVPIFVSFSYLNDSIWVCDPNYMEDSIGSSVTICCVDSQINTLQTQCISKYT 262
Query: 215 ------HFFAMLNLAKDRIADLIK 232
++++A R ++
Sbjct: 263 PGKLKNDLSQLIDVASKRADEIRA 286
>gi|71033863|ref|XP_766573.1| hypothetical protein [Theileria parva strain Muguga]
gi|68353530|gb|EAN34290.1| hypothetical protein TP01_1052 [Theileria parva]
Length = 148
Score = 37.1 bits (84), Expect = 1.9, Method: Composition-based stats.
Identities = 9/39 (23%), Positives = 17/39 (43%)
Query: 7 QENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEE 45
N++R + + S GSC++ G+T L +
Sbjct: 13 SFNELRPLEIRMSTSSAFSGSCMISLGNTIAKCLVNLPK 51
>gi|145517534|ref|XP_001444650.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124412072|emb|CAK77253.1| unnamed protein product [Paramecium tetraurelia]
Length = 233
Score = 37.1 bits (84), Expect = 2.0, Method: Composition-based stats.
Identities = 27/235 (11%), Positives = 64/235 (27%), Gaps = 34/235 (14%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+R GR+ N++RE+ L R GSC + G+ + T LE I+
Sbjct: 18 IRSDGRKNNEVREVKLLRSHLICTSGSCKYE-GEITIYTGIKLELGDQSSIKINVSSMKR 76
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
+ + + +L ++ + +
Sbjct: 77 TNDEK--------------------QKALYLQELLESLYKTDMSELKVGQKGWVLVVEVF 116
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
A + ++++ + + + K + + + + D Y
Sbjct: 117 LLCQIDIAYLEAICTSIYEAMADLRIPTIKVTKNLLTEIEEYELLPNEPTKSFKCDKIYV 176
Query: 181 -----EDSTIDVDANFVMTDSGHIVEVQG--------SAERATFSQDHFFAMLNL 222
+ D+ + ++ QG + + F D +L
Sbjct: 177 VGKVGTELVKDMSLEEFYSVDQKLILAQGRNGYNKLRTFDSCGFDADDLLRVLMF 231
>gi|269860957|ref|XP_002650195.1| hypothetical protein EBI_22736 [Enterocytozoon bieneusi H348]
gi|220066369|gb|EED43853.1| hypothetical protein EBI_22736 [Enterocytozoon bieneusi H348]
Length = 217
Score = 37.1 bits (84), Expect = 2.1, Method: Composition-based stats.
Identities = 10/41 (24%), Positives = 18/41 (43%), Gaps = 3/41 (7%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDT--HLLTT 40
R+ GR + R I + + GS + G T +++T
Sbjct: 9 RVDGRTSTEQRNIKIQFGFDE-TGGSIDLSQGLTAIKVVST 48
>gi|322496128|emb|CBZ31199.1| unnamed protein product [Leishmania donovani BPK282A1]
Length = 324
Score = 37.1 bits (84), Expect = 2.3, Method: Composition-based stats.
Identities = 22/149 (14%), Positives = 43/149 (28%), Gaps = 5/149 (3%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWI-RNTKHGWIT 60
R GR ++R + +GS G T ++ +
Sbjct: 7 RRDGRTALELRGKEMRLSDMTAFDGSSWYAQGQTAVMASIHGPTVAKNDEYDTCIVQVRV 66
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEI----QRMIGRALRSVVDLSALGSRQIIIDC 116
G+L + G K + ++ ++ L +V +++D
Sbjct: 67 QHAGVLAPAAGGAEKVLYEERKLEVLTRTDALALGSLLESTLNAVFIRERFPRCVLVVDV 126
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHME 145
V++ DG A+ AL D
Sbjct: 127 VVVRDDGSLPAVALNAVMSALLDAGLPCR 155
>gi|146075517|ref|XP_001462721.1| ribosomal RNA processing protein [Leishmania infantum JPCM5]
gi|134066800|emb|CAM65260.1| putative ribosomal RNA processing protein [Leishmania infantum
JPCM5]
Length = 324
Score = 37.1 bits (84), Expect = 2.3, Method: Composition-based stats.
Identities = 22/149 (14%), Positives = 43/149 (28%), Gaps = 5/149 (3%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWI-RNTKHGWIT 60
R GR ++R + +GS G T ++ +
Sbjct: 7 RRDGRTALELRGKEMRLSDMTAFDGSSWYAQGQTAVMASIHGPTVAKNDEYDTCIVQVRV 66
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEI----QRMIGRALRSVVDLSALGSRQIIIDC 116
G+L + G K + ++ ++ L +V +++D
Sbjct: 67 QHAGVLAPAAGGAEKVLYEERKLEVLTRTDALALGSLLESTLNAVFIRERFPRCVLVVDV 126
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHME 145
V++ DG A+ AL D
Sbjct: 127 VVVRDDGSLPAVALNAVMSALLDAGLPCR 155
>gi|14250910|emb|CAC39260.1| Rrp45p homologue [Trypanosoma brucei]
Length = 363
Score = 36.7 bits (83), Expect = 2.6, Method: Composition-based stats.
Identities = 13/56 (23%), Positives = 21/56 (37%), Gaps = 5/56 (8%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGD---THLLTTATLEEKVPMWIRN 53
+R R QMRE+S+ + +V+ G T + TA +E
Sbjct: 31 LRPDQRTAQQMREVSVEFPLLSRDV--VVVRCGGSVVTAAIATALVEPTPQRPKHG 84
>gi|261328578|emb|CBH11556.1| ribosomal RNA processing protein 45 [Trypanosoma brucei gambiense
DAL972]
Length = 363
Score = 36.7 bits (83), Expect = 2.7, Method: Composition-based stats.
Identities = 13/56 (23%), Positives = 21/56 (37%), Gaps = 5/56 (8%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGD---THLLTTATLEEKVPMWIRN 53
+R R QMRE+S+ + +V+ G T + TA +E
Sbjct: 31 LRPDQRTAQQMREVSVEFPLLSRDV--VVVRCGGSVVTAAIATALVEPTPQRPKHG 84
>gi|72389791|ref|XP_845190.1| ribosomal RNA processing protein 45 [Trypanosoma brucei TREU927]
gi|62360049|gb|AAX80471.1| ribosomal RNA processing protein 45 [Trypanosoma brucei]
gi|70801725|gb|AAZ11631.1| ribosomal RNA processing protein 45 [Trypanosoma brucei brucei
strain 927/4 GUTat10.1]
Length = 363
Score = 36.7 bits (83), Expect = 2.7, Method: Composition-based stats.
Identities = 13/56 (23%), Positives = 21/56 (37%), Gaps = 5/56 (8%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGD---THLLTTATLEEKVPMWIRN 53
+R R QMRE+S+ + +V+ G T + TA +E
Sbjct: 31 LRPDQRTAQQMREVSVEFPLLSRDV--VVVRCGGSVVTAAIATALVEPTPQRPKHG 84
>gi|147806031|emb|CAN66429.1| hypothetical protein VITISV_005744 [Vitis vinifera]
Length = 1026
Score = 36.7 bits (83), Expect = 3.0, Method: Composition-based stats.
Identities = 9/28 (32%), Positives = 14/28 (50%), Gaps = 1/28 (3%)
Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLL 38
R I + + + A GS V G+T +L
Sbjct: 87 RHILVETGHIGRQASGSVTVTDGETAIL 114
>gi|116855762|gb|ABK30402.1| ribonuclease PH [Legionella pneumophila]
gi|116855765|gb|ABK30404.1| ribonuclease PH [Legionella pneumophila]
gi|116855768|gb|ABK30406.1| ribonuclease PH [Legionella pneumophila]
gi|116855771|gb|ABK30408.1| ribonuclease PH [Legionella pneumophila]
gi|116855774|gb|ABK30410.1| ribonuclease PH [Legionella pneumophila]
gi|116855777|gb|ABK30412.1| ribonuclease PH [Legionella pneumophila]
gi|116855780|gb|ABK30414.1| ribonuclease PH [Legionella pneumophila]
gi|116855783|gb|ABK30416.1| ribonuclease PH [Legionella pneumophila]
gi|116855786|gb|ABK30418.1| ribonuclease PH [Legionella pneumophila]
gi|116855789|gb|ABK30420.1| ribonuclease PH [Legionella pneumophila]
gi|116855792|gb|ABK30422.1| ribonuclease PH [Legionella pneumophila]
gi|116855795|gb|ABK30424.1| ribonuclease PH [Legionella pneumophila]
gi|116855798|gb|ABK30426.1| ribonuclease PH [Legionella pneumophila]
gi|116855801|gb|ABK30428.1| ribonuclease PH [Legionella pneumophila]
gi|116855804|gb|ABK30430.1| ribonuclease PH [Legionella pneumophila]
gi|116855807|gb|ABK30432.1| ribonuclease PH [Legionella pneumophila]
gi|116855810|gb|ABK30434.1| ribonuclease PH [Legionella pneumophila]
gi|116855813|gb|ABK30436.1| ribonuclease PH [Legionella pneumophila]
gi|116855816|gb|ABK30438.1| ribonuclease PH [Legionella pneumophila]
gi|116855819|gb|ABK30440.1| ribonuclease PH [Legionella pneumophila]
gi|116855822|gb|ABK30442.1| ribonuclease PH [Legionella pneumophila]
gi|116855825|gb|ABK30444.1| ribonuclease PH [Legionella pneumophila]
gi|116855828|gb|ABK30446.1| ribonuclease PH [Legionella pneumophila]
gi|116855831|gb|ABK30448.1| ribonuclease PH [Legionella pneumophila]
gi|116855834|gb|ABK30450.1| ribonuclease PH [Legionella pneumophila]
gi|116855837|gb|ABK30452.1| ribonuclease PH [Legionella pneumophila]
gi|116855840|gb|ABK30454.1| ribonuclease PH [Legionella pneumophila]
gi|116855843|gb|ABK30456.1| ribonuclease PH [Legionella pneumophila]
gi|116855846|gb|ABK30458.1| ribonuclease PH [Legionella pneumophila]
gi|116855849|gb|ABK30460.1| ribonuclease PH [Legionella pneumophila]
Length = 30
Score = 36.7 bits (83), Expect = 3.1, Method: Composition-based stats.
Identities = 10/29 (34%), Positives = 20/29 (68%)
Query: 209 ATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
+F+++ +ML+LA+ I LI++QK+
Sbjct: 2 NSFNREQLNSMLSLAEIGIPQLIEIQKNA 30
>gi|322708621|gb|EFZ00198.1| hypothetical protein MAA_03975 [Metarhizium anisopliae ARSEF 23]
Length = 254
Score = 36.4 bits (82), Expect = 3.9, Method: Composition-based stats.
Identities = 25/211 (11%), Positives = 53/211 (25%), Gaps = 20/211 (9%)
Query: 21 SKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGNRVKREAVS 80
A+GS + + P N I G ++
Sbjct: 14 LPNADGSATFSNCGYAVTAAVNGPIEAPRRDENPFEALIDVVVRPAAGVGGTAERQI--- 70
Query: 81 GRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAA--ITGAWVALH 138
+ M+ ALR ++ + I + +++A +
Sbjct: 71 ----------ESMLQAALRQLIPIRNFPRCTIQVTLQIMEAPENAYQNTKLLQPQQNLAI 120
Query: 139 DCLQHMEDCSNKFQLSQVLKGHVAAISCGML--CGYPIVDLDYGEDSTIDVDANFVMTDS 196
+ LK A + + G I+D E + T
Sbjct: 121 IPALFHAAILGLLTAAIPLKTIATATTIAIPAGSGALIIDPSTEESAKATSLHALAFTSH 180
Query: 197 GHIVEVQGSAERATFSQDHFFAMLNLAKDRI 227
++ + S +FS + + +L +
Sbjct: 181 DELLLAESSG---SFSIEDWDRVLETGQRVC 208
>gi|156086764|ref|XP_001610789.1| hypothetical protein [Babesia bovis T2Bo]
gi|154798042|gb|EDO07221.1| hypothetical protein BBOV_IV008670 [Babesia bovis]
Length = 250
Score = 36.0 bits (81), Expect = 4.1, Method: Composition-based stats.
Identities = 22/161 (13%), Positives = 51/161 (31%), Gaps = 25/161 (15%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEG-SCLVKFGD-----------THLLTTATLEEKVP 48
+R GR R + + G SC + GD T +++
Sbjct: 5 LRPDGRNLYDPRRFKVELNPLR--TGPSCRLTVGDSSPNSPVYRDRTSVISLIYFSADNK 62
Query: 49 MWIRNTKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALG 108
+ T E + P R G + + M+ + ++S++D ++LG
Sbjct: 63 NRNTVGSYHRPTFEVYIRPAVGPVR-----------GYIRGYECMLLKCMQSIIDGTSLG 111
Query: 109 SRQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSN 149
+ +++ G + ++L + + +
Sbjct: 112 RVLVSARIQILEDGSGLLATCMNALIISLVVAALPLREIPH 152
>gi|328723389|ref|XP_003247830.1| PREDICTED: hypothetical protein LOC100571999 [Acyrthosiphon pisum]
Length = 178
Score = 36.0 bits (81), Expect = 5.0, Method: Composition-based stats.
Identities = 11/110 (10%), Positives = 25/110 (22%), Gaps = 2/110 (1%)
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
I A+H D + V + +
Sbjct: 1 MNRGFVFSPSVVVILVLSAAVHYACGDCWDTGCQPDSWLVKGCATYGMKEIKHTPCGGGN 60
Query: 177 LDYGEDSTIDVDANFVMTDSGHIV--EVQGSAERATFSQDHFFAMLNLAK 224
+ VD + + G + E+ +A ++ + A +
Sbjct: 61 VYSCCHQHNSVDTSLQLNKIGDLTYYELGLTACGQVYTNEDMVAAIAFGH 110
>gi|300706046|ref|XP_002995335.1| hypothetical protein NCER_101813 [Nosema ceranae BRL01]
gi|239604368|gb|EEQ81664.1| hypothetical protein NCER_101813 [Nosema ceranae BRL01]
Length = 195
Score = 35.6 bits (80), Expect = 6.3, Method: Composition-based stats.
Identities = 12/41 (29%), Positives = 22/41 (53%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTA 41
+R R + REI +T + + +GS +K G +H+L +
Sbjct: 19 IRPDLRNNLEKREIQITLLDNPHLDGSLDIKMGYSHILLSV 59
>gi|164661509|ref|XP_001731877.1| hypothetical protein MGL_1145 [Malassezia globosa CBS 7966]
gi|159105778|gb|EDP44663.1| hypothetical protein MGL_1145 [Malassezia globosa CBS 7966]
Length = 291
Score = 35.6 bits (80), Expect = 6.4, Method: Composition-based stats.
Identities = 7/22 (31%), Positives = 10/22 (45%)
Query: 23 YAEGSCLVKFGDTHLLTTATLE 44
A+G V G T ++ LE
Sbjct: 4 QADGCARVTLGSTEVMCGVKLE 25
>gi|330914844|ref|XP_003296808.1| hypothetical protein PTT_06997 [Pyrenophora teres f. teres 0-1]
gi|311330886|gb|EFQ95093.1| hypothetical protein PTT_06997 [Pyrenophora teres f. teres 0-1]
Length = 262
Score = 35.6 bits (80), Expect = 6.8, Method: Composition-based stats.
Identities = 20/208 (9%), Positives = 51/208 (24%), Gaps = 11/208 (5%)
Query: 21 SKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGNRVKREAVS 80
A+GS ++ +V + I R +
Sbjct: 11 LNRADGSATYIHNGYSIIGAVNGPIEVQRRDELPEEAAIEVNVRPAMGVGSPRERHLETL 70
Query: 81 GRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDV-IQADGGTRTAAITGAWVALHD 139
RS + + I R L V ++ D + + + +AL
Sbjct: 71 VHNTMRSIILTQSIPRTL---VQVTLQVRSLPEEDSTTGVNTSLTLLPHLLHTSLLALLS 127
Query: 140 CLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHI 199
+ ++Q + + + + F + + +
Sbjct: 128 ASIPLRTTLTSVIIAQPASPSTNSFPPLLSPTANELL----RAKPVRAIHVFAFSGNRKM 183
Query: 200 VEVQGSAERATFSQDHFFAMLNLAKDRI 227
+ + + FS + + +A+
Sbjct: 184 LLSESDGK---FSYEEWAEACEMAETAC 208
>gi|308801701|ref|XP_003078164.1| Exosc8 protein (ISS) [Ostreococcus tauri]
gi|116056615|emb|CAL52904.1| Exosc8 protein (ISS) [Ostreococcus tauri]
Length = 294
Score = 35.2 bits (79), Expect = 7.0, Method: Composition-based stats.
Identities = 11/97 (11%), Positives = 34/97 (35%), Gaps = 4/97 (4%)
Query: 141 LQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIV 200
D + ++ ++ + + +VD + E++ + + + V+T+ G I
Sbjct: 192 GVDGADDGMRKGTPLNVRTTPVCLTTALYKEHLLVDPTHAEEALSECEVSVVLTEDGMIR 251
Query: 201 EVQGSAERATFSQDHFFAMLNLAK----DRIADLIKL 233
V + ++D + A+ ++
Sbjct: 252 GVFKNGGEVEATEDILMKCIAAARLQYAASAKVILDA 288
>gi|213023528|ref|ZP_03337975.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Typhi str. 404ty]
Length = 83
Score = 35.2 bits (79), Expect = 7.5, Method: Composition-based stats.
Identities = 7/35 (20%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Query: 14 ISLTRRV-SKYAEGSCLVKFGDTHLLTTATLEEKV 47
++L + ++ A + +V DT + T +K
Sbjct: 41 VTLETGMMARQATAAVMVSMDDTAVFVTVVGRKKP 75
>gi|328723391|ref|XP_003247831.1| PREDICTED: hypothetical protein LOC100168183 [Acyrthosiphon pisum]
Length = 178
Score = 35.2 bits (79), Expect = 8.8, Method: Composition-based stats.
Identities = 10/110 (9%), Positives = 25/110 (22%), Gaps = 2/110 (1%)
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
I ++H D + V + +
Sbjct: 1 MSRGFVFSPSVVVILVLSASVHYACGDCWDTGCQPDSWLVKGCDEYGMKEIKRTPCGGGN 60
Query: 177 LDYGEDSTIDVDANFVMTDSGHIV--EVQGSAERATFSQDHFFAMLNLAK 224
+ VD + + G + E+ +A ++ + A +
Sbjct: 61 VYSCCHQYNSVDPSLQLNKIGDLTYYELGLTACGQVYTNEDMVAAIAFGH 110
>gi|145518614|ref|XP_001445179.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124412623|emb|CAK77782.1| unnamed protein product [Paramecium tetraurelia]
Length = 233
Score = 34.8 bits (78), Expect = 9.5, Method: Composition-based stats.
Identities = 27/235 (11%), Positives = 65/235 (27%), Gaps = 34/235 (14%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+R GR+ N++RE L R GSC + G+ + T LE I+
Sbjct: 18 IRSDGRKNNEVRETKLLRSHLICTSGSCKYE-GEITIYTGIKLELGDQSQIKINVSSMKR 76
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
+ + + + +L ++ + +
Sbjct: 77 TNDEK--------------------QKAQYLQELLESLYKTDMSELKVGQKGWVLVVEVF 116
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
A + ++++ + ++ + K + + + + D Y
Sbjct: 117 LLCQIDIAYLEAICTSIYEAMADLKIPTIKVTKNLLTEIEEYELQPNEPTKSFKCDKIYV 176
Query: 181 -----EDSTIDVDANFVMTDSGHIVEVQG--------SAERATFSQDHFFAMLNL 222
+ D+ + ++ QG + + F D +L
Sbjct: 177 VGKVGTELVKDMSLEEFYSVDQKLILAQGRNGYNKLRTFDSCGFDGDDLLRVLMF 231
Database: nr
Posted date: May 22, 2011 12:22 AM
Number of letters in database: 999,999,966
Number of sequences in database: 2,987,313
Database: /data/usr2/db/fasta/nr.01
Posted date: May 22, 2011 12:30 AM
Number of letters in database: 999,999,796
Number of sequences in database: 2,903,041
Database: /data/usr2/db/fasta/nr.02
Posted date: May 22, 2011 12:36 AM
Number of letters in database: 999,999,281
Number of sequences in database: 2,904,016
Database: /data/usr2/db/fasta/nr.03
Posted date: May 22, 2011 12:41 AM
Number of letters in database: 999,999,960
Number of sequences in database: 2,935,328
Database: /data/usr2/db/fasta/nr.04
Posted date: May 22, 2011 12:46 AM
Number of letters in database: 842,794,627
Number of sequences in database: 2,394,679
Lambda K H
0.313 0.119 0.311
Lambda K H
0.267 0.0366 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,667,572,253
Number of Sequences: 14124377
Number of extensions: 88314303
Number of successful extensions: 247390
Number of sequences better than 10.0: 5186
Number of HSP's better than 10.0 without gapping: 4828
Number of HSP's successfully gapped in prelim test: 358
Number of HSP's that attempted gapping in prelim test: 233412
Number of HSP's gapped (non-prelim): 7586
length of query: 242
length of database: 4,842,793,630
effective HSP length: 135
effective length of query: 107
effective length of database: 2,936,002,735
effective search space: 314152292645
effective search space used: 314152292645
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 79 (35.2 bits)