RPSBLAST alignment of GI: 254780630 and protein with PDBid: 1udn

>1udn_A Ribonuclease PH, RNAse PH; transferase, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Aquifex aeolicus} SCOP: d.14.1.4 d.101.1.1 PDB: 1udq_A 1uds_A 1udo_A Length = 255

 Score =  156 bits (395), Expect = 4e-39
 Identities = 115/239 (48%), Positives = 158/239 (66%), Gaps = 2/239 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR  GR+E+Q+R +S+ R   +Y EGSCL+ FG T ++ TA++ E VP W++    GWIT
Sbjct: 1   MRSDGRKEDQLRPVSIQRDFLEYPEGSCLISFGKTKVICTASVIENVPNWLKGKGQGWIT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPR+T  R  RE+V GR GGR+ EIQRMIGRA+R+ V+L+ +G R I +DCDVIQ
Sbjct: 61  AEYSMLPRATQQRTIRESVQGRIGGRTHEIQRMIGRAMRTAVELTKIGERTIWVDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTAAITGA+VA+ D +  +            +K  VAA+S G++    ++DL++ 
Sbjct: 121 ADGGTRTAAITGAFVAVADAIIKLHK--EGIIEETPIKDFVAAVSVGIVNDRILLDLNFE 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           EDS   VD N V T SG + EV    E  +F++D    ML+LA+  I +LI+LQK +  
Sbjct: 179 EDSAAQVDMNVVGTGSGRLSEVHTMGEEYSFTKDELIKMLDLAQKGINELIELQKKLYV 237