RPSBLAST alignment of GI: 254780630 and protein with PDBid: 2nn6

>2nn6_D Exosome complex exonuclease RRP46; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: d.14.1.4 d.101.1.1 Length = 237
 Score =  100 bits (249), Expect = 3e-22
 Identities = 32/245 (13%), Positives = 67/245 (27%), Gaps = 32/245 (13%)

Query: 1   MRLSGRQEN-QMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWI 59
              S R     +R  +  + +    +GS     GDT +L       +V +          
Sbjct: 19  TGSSPRGPGCSLRHFACEQNLLSRPDGSASFLQGDTSVLAGVYGPAEVKVSK-------- 70

Query: 60  TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119
              +         R K     G  G   +  +R+I     +VV  +      I +   V+
Sbjct: 71  -EIFNKATLEVILRPKI----GLPGVAEKSRERLIRNTCEAVVLGTLHPRTSITVVLQVV 125

Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY-PIVDLD 178
              G      +  A +AL D    M                   ++C +      ++D  
Sbjct: 126 SDAGSLLACCLNAACMALVDAGVPMRALFCG-------------VACALDSDGTLVLDPT 172

Query: 179 YGEDSTIDVDANFVMT-DSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
             ++        F +      ++          +S       L  A+     + +  ++ 
Sbjct: 173 SKQEKEARAVLTFALDSVERKLLMSSTKGL---YSDTELQQCLAAAQAASQHVFRFYRES 229

Query: 238 ISNEV 242
           +    
Sbjct: 230 LQRRY 234