RPSBLAST alignment of GI: 254780630 and protein with PDBid: 2nn6
>2nn6_D Exosome complex exonuclease RRP46; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: d.14.1.4 d.101.1.1 Length = 237
Score = 100 bits (249), Expect = 3e-22
Identities = 32/245 (13%), Positives = 67/245 (27%), Gaps = 32/245 (13%)
Query: 1 MRLSGRQEN-QMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWI 59
S R +R + + + +GS GDT +L +V +
Sbjct: 19 TGSSPRGPGCSLRHFACEQNLLSRPDGSASFLQGDTSVLAGVYGPAEVKVSK-------- 70
Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119
+ R K G G + +R+I +VV + I + V+
Sbjct: 71 -EIFNKATLEVILRPKI----GLPGVAEKSRERLIRNTCEAVVLGTLHPRTSITVVLQVV 125
Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY-PIVDLD 178
G + A +AL D M ++C + ++D
Sbjct: 126 SDAGSLLACCLNAACMALVDAGVPMRALFCG-------------VACALDSDGTLVLDPT 172
Query: 179 YGEDSTIDVDANFVMT-DSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
++ F + ++ +S L A+ + + ++
Sbjct: 173 SKQEKEARAVLTFALDSVERKLLMSSTKGL---YSDTELQQCLAAAQAASQHVFRFYRES 229
Query: 238 ISNEV 242
+
Sbjct: 230 LQRRY 234