RPSBLAST alignment of GI: 254780630 and protein with PDBid: 2nn6
>2nn6_E Exosome complex exonuclease RRP42; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: d.14.1.4 d.101.1.1 Length = 305
Score = 138 bits (347), Expect = 1e-33
Identities = 39/263 (14%), Positives = 75/263 (28%), Gaps = 29/263 (11%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+R+ GR R + + V GS VK G T +L E + G++
Sbjct: 36 LRVDGRGCEDYRCVEVETDVVSNTSGSARVKLGHTDILVGVKA-EMGTPKLEKPNEGYLE 94
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRS--VVDLSAL------GSRQI 112
+T R EI + R + VDL L +
Sbjct: 95 FFVDCSASATPEFEGR-----GGDDLGTEIANTLYRIFNNKSSVDLKTLCISPREHCWVL 149
Query: 113 IIDCDVIQADGGTRTAAITGAWVALHDC--------------LQHMEDCSNKFQLSQVLK 158
+D +++ G A AL + + ++
Sbjct: 150 YVDVLLLECGGNLFDAISIAVKAALFNTRIPRVRVLEDEEGSKDIELSDDPYDCIRLSVE 209
Query: 159 GHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFA 218
++ + +VD E++ +T G + ++ + + + F
Sbjct: 210 NVPCIVTLCKIGYRHVVDATLQEEACSLASLLVSVTSKGVVTCMR-KVGKGSLDPESIFE 268
Query: 219 MLNLAKDRIADLIKLQKDVISNE 241
M+ K L + V+ E
Sbjct: 269 MMETGKRVGKVLHASLQSVVHKE 291