RPSBLAST alignment of GI: 254780630 and protein with PDBid: 2nn6

>2nn6_E Exosome complex exonuclease RRP42; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: d.14.1.4 d.101.1.1 Length = 305
 Score =  138 bits (347), Expect = 1e-33
 Identities = 39/263 (14%), Positives = 75/263 (28%), Gaps = 29/263 (11%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R+ GR     R + +   V     GS  VK G T +L      E     +     G++ 
Sbjct: 36  LRVDGRGCEDYRCVEVETDVVSNTSGSARVKLGHTDILVGVKA-EMGTPKLEKPNEGYLE 94

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRS--VVDLSAL------GSRQI 112
                   +T     R            EI   + R   +   VDL  L          +
Sbjct: 95  FFVDCSASATPEFEGR-----GGDDLGTEIANTLYRIFNNKSSVDLKTLCISPREHCWVL 149

Query: 113 IIDCDVIQADGGTRTAAITGAWVALHDC--------------LQHMEDCSNKFQLSQVLK 158
            +D  +++  G    A       AL +                           +   ++
Sbjct: 150 YVDVLLLECGGNLFDAISIAVKAALFNTRIPRVRVLEDEEGSKDIELSDDPYDCIRLSVE 209

Query: 159 GHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFA 218
                ++   +    +VD    E++         +T  G +  ++    + +   +  F 
Sbjct: 210 NVPCIVTLCKIGYRHVVDATLQEEACSLASLLVSVTSKGVVTCMR-KVGKGSLDPESIFE 268

Query: 219 MLNLAKDRIADLIKLQKDVISNE 241
           M+   K     L    + V+  E
Sbjct: 269 MMETGKRVGKVLHASLQSVVHKE 291