RPSBLAST alignment of GI: 254780630 and protein with PDBid: 2nn6

>2nn6_F MTR3, exosome component 6; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: d.14.1.4 d.101.1.1 Length = 272

 Score =  124 bits (311), Expect = 2e-29
 Identities = 36/255 (14%), Positives = 74/255 (29%), Gaps = 30/255 (11%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----- 55
                R   ++R +     +   A+GS  ++ G T +L   +   +     R        
Sbjct: 26  EAPGTRDPTRLRPVYARAGLLSQAKGSAYLEAGGTKVLCAVSGPRQAEGGERGGGPAGAG 85

Query: 56  -------HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALG 108
                   G +  ++   P +          +   G   +E+   +  AL   V L    
Sbjct: 86  GEAPAALRGRLLCDFRRAPFAGR-----RRRAPPGGCEERELALALQEALEPAVRLGRYP 140

Query: 109 SRQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGM 168
             Q+ +   +++  G    AA+T A +AL D    M D                      
Sbjct: 141 RAQLEVSALLLEDGGSALAAALTAAALALADAGVEMYDLVV----------GCGLSLAPG 190

Query: 169 LCGYPIVDLDYGEDSTIDVDANF-VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRI 227
                ++D    E+          +M     +  + GS E      + +   + L  +  
Sbjct: 191 PAPTWLLDPTRLEEERAAAGLTVALMPVLNQVAGLLGSGE--GGLTESWAEAVRLGLEGC 248

Query: 228 ADLIKLQKDVISNEV 242
             L  + +  +    
Sbjct: 249 QRLYPVLQQSLVRAA 263