RPSBLAST alignment of GI: 254780630 and protein with PDBid: 3cdi
>3cdi_A Polynucleotide phosphorylase; mRNA turnover, RNAse, RNA degradation, kinase, transferase; 2.60A {Escherichia coli} PDB: 1sro_A Length = 723
Score = 104 bits (262), Expect = 1e-23
Identities = 49/246 (19%), Positives = 92/246 (37%), Gaps = 24/246 (9%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT----KH 56
R+ GR+++ +R + + V GS L G+T L TATL + + +
Sbjct: 320 PRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVLDELMGERT 379
Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
Y P S G G R R+ R + +V+ + +
Sbjct: 380 DTFLFHYNFPPYSVGETGMV----GSPKRREIGHGRLAKRGVLAVMPDMDKFPYTVRVVS 435
Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY--PI 174
++ +++G + A++ GA +AL D +K VA I+ G++ +
Sbjct: 436 EITESNGSSSMASVCGASLALMDA-------------GVPIKAAVAGIAMGLVKEGDNYV 482
Query: 175 VDLDYGEDSTIDVDANFVMTDSGH-IVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
V D D D +F + S I +Q + +++ LN AK ++ +
Sbjct: 483 VLSDILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGV 542
Query: 234 QKDVIS 239
+ I+
Sbjct: 543 MEQAIN 548