RPSBLAST alignment of GI: 254780630 and protein with PDBid: 3cdi

>3cdi_A Polynucleotide phosphorylase; mRNA turnover, RNAse, RNA degradation, kinase, transferase; 2.60A {Escherichia coli} PDB: 1sro_A Length = 723
 Score =  104 bits (262), Expect = 1e-23
 Identities = 49/246 (19%), Positives = 92/246 (37%), Gaps = 24/246 (9%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT----KH 56
            R+ GR+++ +R + +   V     GS L   G+T  L TATL       + +     + 
Sbjct: 320 PRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVLDELMGERT 379

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y   P S G         G    R     R+  R + +V+         + +  
Sbjct: 380 DTFLFHYNFPPYSVGETGMV----GSPKRREIGHGRLAKRGVLAVMPDMDKFPYTVRVVS 435

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY--PI 174
           ++ +++G +  A++ GA +AL D                 +K  VA I+ G++      +
Sbjct: 436 EITESNGSSSMASVCGASLALMDA-------------GVPIKAAVAGIAMGLVKEGDNYV 482

Query: 175 VDLDYGEDSTIDVDANFVMTDSGH-IVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           V  D   D     D +F +  S   I  +Q   +    +++     LN AK     ++ +
Sbjct: 483 VLSDILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGV 542

Query: 234 QKDVIS 239
            +  I+
Sbjct: 543 MEQAIN 548