RPSBLAST alignment of GI: 254780630 and protein with PDBid: 3cdi

>3cdi_A Polynucleotide phosphorylase; mRNA turnover, RNAse, RNA degradation, kinase, transferase; 2.60A {Escherichia coli} PDB: 1sro_A Length = 723

 Score = 46.3 bits (110), Expect = 6e-06
 Identities = 43/246 (17%), Positives = 84/246 (34%), Gaps = 55/246 (22%)

Query: 12  REISL-TRRVSKYAEGSCLVKFGDTHLLTTATLEEKV-------PMWIRNTKHGWITAEY 63
             ++L T  +++ A  + +V   DT +  T   ++K        P+          T  Y
Sbjct: 20  HTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPL----------TVNY 69

Query: 64  -------GMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                  G +P   G+  +RE   GR       I R+I R +R +     +   Q+I   
Sbjct: 70  QERTYAAGRIP---GSFFRRE---GRPSEGETLIARLIDRPIRPLFPEGFVNEVQVI--A 121

Query: 117 DVIQADGGTRT--AAITGAWVALHDCLQHMEDCSNKFQLSQV-LKGHVAAISCGMLCGYP 173
            V+  +        A+ GA  AL               LS +   G + A   G +    
Sbjct: 122 TVVSVNPQVNPDIVAMIGASAAL--------------SLSGIPFNGPIGAARVGYINDQY 167

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATF-SQDHFFAMLNLAKDRIADLIK 232
           +++    E      ++   +  +G    V      A   S+D     +    ++   +I+
Sbjct: 168 VLNPTQDELK----ESKLDLVVAGTEAAVLMVESEAQLLSEDQMLGAVVFGHEQQQVVIQ 223

Query: 233 LQKDVI 238
              +++
Sbjct: 224 NINELV 229