RPS-BLAST 2.2.22 [Sep-27-2009] Database: scop70_1_75 13,730 sequences; 2,407,596 total letters Searching..................................................done Query= gi|254780630|ref|YP_003065043.1| ribonuclease PH [Candidatus Liberibacter asiaticus str. psy62] (242 letters) >d1r6la1 d.14.1.4 (A:1-151) Ribonuclease PH, domain 1 {Pseudomonas aeruginosa [TaxId: 287]} Length = 151 Score = 113 bits (282), Expect = 2e-26 Identities = 85/143 (59%), Positives = 108/143 (75%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R SGR +Q+R I +TR +K+AEGS LV+FGDT ++ T + E VP +++ GW+TA Sbjct: 3 RPSGRAADQLRPIRITRHYTKHAEGSVLVEFGDTKVICTVSAESGVPRFLKGQGQGWLTA 62 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EYGMLPRSTG R +REA G+QGGR+ EIQR+IGR+LR+ +DLS LG + IDCDVIQA Sbjct: 63 EYGMLPRSTGERNQREASRGKQGGRTLEIQRLIGRSLRAALDLSKLGENTLYIDCDVIQA 122 Query: 122 DGGTRTAAITGAWVALHDCLQHM 144 DGGTRTA+ITGA VAL D L + Sbjct: 123 DGGTRTASITGATVALIDALAVL 145 >d1oysa1 d.14.1.4 (A:1-151) Ribonuclease PH, domain 1 {Bacillus subtilis [TaxId: 1423]} Length = 151 Score = 111 bits (278), Expect = 6e-26 Identities = 71/144 (49%), Positives = 101/144 (70%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR GRQ +++R I+ + EGS L+ G+T ++ A++E++VP ++R GWIT Sbjct: 1 MRHDGRQHDELRPITFDLDFISHPEGSVLITAGNTKVICNASVEDRVPPFLRGGGKGWIT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLP++T + +E+ G+ GR+ EIQR+IGRALR+VVDL LG R I IDCDVIQ Sbjct: 61 AEYSMLPQATNQQTIQESSKGKISGRTMEIQRLIGRALRAVVDLEKLGERTIWIDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHM 144 ADGGTRTA+ITGA++A+ + + Sbjct: 121 ADGGTRTASITGAFLAMAIAIGKL 144 >d2je6b1 d.14.1.4 (B:8-155) Exosome complex exonuclease 1, ECX1 {Sulfolobus solfataricus [TaxId: 2287]} Length = 148 Score = 105 bits (262), Expect = 4e-24 Identities = 36/140 (25%), Positives = 63/140 (45%), Gaps = 6/140 (4%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKV-PMWIRNTKHGWIT 60 R GR+ +++R I + V K A+GS + + G+T + +++ P + + Sbjct: 12 RTDGRKPDELRSIKIELGVLKNADGSAIFEMGNTKAIAAVYGPKEMHPRHLSLPDRAVLR 71 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 Y M P ST R R E+ ++I AL S V + I + +++Q Sbjct: 72 VRYHMTPFSTDERKNP-----APSRREIELSKVIREALESAVLVELFPRTAIDVFTEILQ 126 Query: 121 ADGGTRTAAITGAWVALHDC 140 AD G+R ++ A +AL D Sbjct: 127 ADAGSRLVSLMAASLALADA 146 >d2nn6e1 d.14.1.4 (E:5-191) Exosome complex exonuclease RRP42 {Human (Homo sapiens) [TaxId: 9606]} Length = 187 Score = 104 bits (261), Expect = 6e-24 Identities = 29/147 (19%), Positives = 47/147 (31%), Gaps = 14/147 (9%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 +R+ GR R + + V GS VK G T +L E P + + G++ Sbjct: 18 LRVDGRGCEDYRCVEVETDVVSNTSGSARVKLGHTDILVGVKAEMGTPKLEKPNE-GYLE 76 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSV--VDLSALG------SRQI 112 +T R EI + R + VDL L + Sbjct: 77 FFVDCSASATPEFEGR-----GGDDLGTEIANTLYRIFNNKSSVDLKTLCISPREHCWVL 131 Query: 113 IIDCDVIQADGGTRTAAITGAWVALHD 139 +D +++ G A AL + Sbjct: 132 YVDVLLLECGGNLFDAISIAVKAALFN 158 >d2ba0g1 d.14.1.4 (G:3-178) Exosome complex exonuclease 2,ECX2 {Archaeoglobus fulgidus [TaxId: 2234]} Length = 176 Score = 104 bits (260), Expect = 8e-24 Identities = 37/148 (25%), Positives = 62/148 (41%), Gaps = 14/148 (9%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 R+ GR ++ R++ + V + AEGS LVK GDT ++ ++ P + G I Sbjct: 20 ERIDGRGFDEFRKVEIIPNVIEKAEGSALVKLGDTQVVVGVKMQPGEPYPDTPDR-GVII 78 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRS--VVDLSALGSR------QI 112 ++P ++ G S E+ R++ R +R VDLS L + Sbjct: 79 VNAELVPLASPTF-----EPGPPDENSIELARVVDRGIRESEAVDLSKLVIEEGEKVWIV 133 Query: 113 IIDCDVIQADGGTRTAAITGAWVALHDC 140 +D + DG A+ A AL + Sbjct: 134 FVDIHALDDDGNLLDASALAAIAALMNT 161 >d1udsa1 d.14.1.4 (A:2-150) Ribonuclease PH, domain 1 {Aquifex aeolicus [TaxId: 63363]} Length = 149 Score = 102 bits (254), Expect = 4e-23 Identities = 80/145 (55%), Positives = 106/145 (73%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR+E+Q+R +S+ R +Y EGSCL+ FG T ++ TA++ E VP W++ GWITA Sbjct: 1 RSDGRKEDQLRPVSIQRDFLEYPEGSCLISFGKTKVICTASVIENVPNWLKGKGQGWITA 60 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLPR+T R RE+V GR GGR+ EIQRMIGRA+R+ V+L+ +G R I +DCDVIQA Sbjct: 61 EYSMLPRATQQRTIRESVQGRIGGRTHEIQRMIGRAMRTAVELTKIGERTIWVDCDVIQA 120 Query: 122 DGGTRTAAITGAWVALHDCLQHMED 146 DGGT TAAITGA+VA+ D + + Sbjct: 121 DGGTATAAITGAFVAVADAIIKLHK 145 >d2nn6c1 d.14.1.4 (C:7-187) Exosome complex exonuclease RRP43 {Human (Homo sapiens) [TaxId: 9606]} Length = 181 Score = 100 bits (250), Expect = 9e-23 Identities = 26/147 (17%), Positives = 46/147 (31%), Gaps = 14/147 (9%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 R GR+ + R ++ A+GS LVK G+T ++ E P K G++ Sbjct: 16 CRPDGRELGEFRTTTVNIGSISTADGSALVKLGNTTVICGVKAEFAAPSTDAPDK-GYVV 74 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRS--------VVDLSALGSRQI 112 + P + G +Q + I + + + + Sbjct: 75 PNVDLPPLCSSRFRSG-----PPGEEAQVASQFIADVIENSQIIQKEDLCISPGKLVWVL 129 Query: 113 IIDCDVIQADGGTRTAAITGAWVALHD 139 D + DG A AL + Sbjct: 130 YCDLICLDYDGNILDACTFALLAALKN 156 >d1e3ha3 d.14.1.4 (A:346-482) Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domains 1 and 4 {Streptomyces antibioticus [TaxId: 1890]} Length = 137 Score = 100 bits (249), Expect = 1e-22 Identities = 21/130 (16%), Positives = 41/130 (31%) Query: 10 QMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRS 69 +R ++ GS L + G+T +L TL +T Y Sbjct: 2 DIRTLAAEVEAIPRVHGSALFERGETQILGVTTLNMLRMEQQLDTLSPVTRKRYMHNYNF 61 Query: 70 TGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAA 129 V G R + RA+ V+ I + + ++G T + Sbjct: 62 PPYSVGETGRVGSPKRREIGHGALAERAIVPVLPTREEFPYAIRQVSEALGSNGSTSMGS 121 Query: 130 ITGAWVALHD 139 + + ++L + Sbjct: 122 VCASTMSLLN 131 >d2ba0d1 d.14.1.4 (D:10-153) Exosome complex exonuclease 1, ECX1 {Archaeoglobus fulgidus [TaxId: 2234]} Length = 144 Score = 95.3 bits (236), Expect = 4e-21 Identities = 41/141 (29%), Positives = 65/141 (46%), Gaps = 6/141 (4%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPM-WIRNTKHGWI 59 +RL GR+ +++R I + V K A+GSC ++ G ++ +V +++ I Sbjct: 7 LRLDGRKFDELRPIKIEASVLKRADGSCYLEMGKNKVIAAVFGPREVHPRHLQDPSKAII 66 Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119 Y M P S R + RS EI ++ A +V+ I I +V+ Sbjct: 67 RYRYNMAPFSVEERKRP-----GPDRRSIEISKVSKEAFEAVIMKELFPRSAIDIFVEVL 121 Query: 120 QADGGTRTAAITGAWVALHDC 140 QAD G+RTA + A VAL D Sbjct: 122 QADAGSRTACLNAASVALVDA 142 >d2nn6b1 d.14.1.4 (B:6-150) Exosome complex exonuclease RRP41 {Human (Homo sapiens) [TaxId: 9606]} Length = 145 Score = 92.3 bits (228), Expect = 3e-20 Identities = 34/142 (23%), Positives = 58/142 (40%), Gaps = 6/142 (4%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVP--MWIRNTKHGW 58 R+ GR+ ++R+I V A+GS ++ G+T L ++ Sbjct: 6 YRVDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVVYGPHEIRGSRARALPDRAL 65 Query: 59 ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDV 118 + +Y STG R +R +S E+ + + + + QI I V Sbjct: 66 VNCQYSSATFSTGERKRR----PHGDRKSCEMGLQLRQTFEAAILTQLHPRSQIDIYVQV 121 Query: 119 IQADGGTRTAAITGAWVALHDC 140 +QADGGT A + A +A+ D Sbjct: 122 LQADGGTYAACVNAATLAVLDA 143 >d2nn6f1 d.14.1.4 (F:29-175) Exosome complex exonuclease MTR3 {Human (Homo sapiens) [TaxId: 9606]} Length = 147 Score = 90.3 bits (223), Expect = 1e-19 Identities = 26/148 (17%), Positives = 49/148 (33%), Gaps = 17/148 (11%) Query: 5 GRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT------------LEEKVPMWIR 52 R ++R + + A+GS ++ G T +L + Sbjct: 2 TRDPTRLRPVYARAGLLSQAKGSAYLEAGGTKVLCAVSGPRQAEGGERGGGPAGAGGEAP 61 Query: 53 NTKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQI 112 G + ++ P + R G +E+ + AL V L Q+ Sbjct: 62 AALRGRLLCDFRRAPFAGRRRRAP-----PGGCEERELALALQEALEPAVRLGRYPRAQL 116 Query: 113 IIDCDVIQADGGTRTAAITGAWVALHDC 140 + +++ G AA+T A +AL D Sbjct: 117 EVSALLLEDGGSALAAALTAAALALADA 144 >d2nn6d1 d.14.1.4 (D:25-146) Exosome complex exonuclease RRP46 {Human (Homo sapiens) [TaxId: 9606]} Length = 122 Score = 89.8 bits (222), Expect = 2e-19 Identities = 23/130 (17%), Positives = 41/130 (31%), Gaps = 13/130 (10%) Query: 10 QMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRS 69 +R + + + +GS GDT +L +V + + Sbjct: 3 SLRHFACEQNLLSRPDGSASFLQGDTSVLAGVYGPAEVKVS---------KEIFNKATLE 53 Query: 70 TGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAA 129 R K G G + +R+I +VV + I + V+ G Sbjct: 54 VILRPKI----GLPGVAEKSRERLIRNTCEAVVLGTLHPRTSITVVLQVVSDAGSLLACC 109 Query: 130 ITGAWVALHD 139 + A +AL D Sbjct: 110 LNAACMALVD 119 >d2nn6a1 d.14.1.4 (A:1-184) Exosome complex exonuclease RRP45 {Human (Homo sapiens) [TaxId: 9606]} Length = 184 Score = 86.7 bits (214), Expect = 2e-18 Identities = 37/146 (25%), Positives = 57/146 (39%), Gaps = 17/146 (11%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 RL GRQ R I ++ G C+V+ G T +L + E P R T+ + Sbjct: 23 RLDGRQTYDYRNIRISF---GTDYGCCIVELGKTRVLGQVSCELVSPKLNRATEG-ILFF 78 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRS--VVDLSALGS------RQII 113 + + GRQ ++ R++ R LR+ +D +L QI Sbjct: 79 NLELSQMAA-----PAFEPGRQSDLLVKLNRLMERCLRNSKCIDTESLCVVAGEKVWQIR 133 Query: 114 IDCDVIQADGGTRTAAITGAWVALHD 139 +D ++ DG AA A VAL Sbjct: 134 VDLHLLNHDGNIIDAASIAAIVALCH 159 >d2je6a1 d.14.1.4 (A:1-191) Exosome complex exonuclease 2,ECX2 {Sulfolobus solfataricus [TaxId: 2287]} Length = 191 Score = 85.3 bits (210), Expect = 4e-18 Identities = 33/148 (22%), Positives = 55/148 (37%), Gaps = 14/148 (9%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 +R GR+ R +S+T +K A+GS LVK G T +L LE P + I Sbjct: 27 IRQDGRKLTDYRPLSITLDYAKKADGSALVKLGTTMVLAGTKLEIDKPYEDTPNQGNLIV 86 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRS--------VVDLSALGSRQI 112 + P + + E+ R++ R+LR +V + Sbjct: 87 NVELL-PLAYETFEPG-----PPDENAIELARVVDRSLRDSKALDLTKLVIEPGKSVWTV 140 Query: 113 IIDCDVIQADGGTRTAAITGAWVALHDC 140 +D V+ G A + AL++ Sbjct: 141 WLDVYVLDYGGNVLDACTLASVAALYNT 168 >d1udsa2 d.101.1.1 (A:151-255) Ribonuclease PH, domain 2 {Aquifex aeolicus [TaxId: 63363]} Length = 105 Score = 82.3 bits (203), Expect = 3e-17 Identities = 33/86 (38%), Positives = 51/86 (59%) Query: 157 LKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHF 216 +K VAA+S G++ ++DL++ EDS VD N V T SG + EV E +F++D Sbjct: 5 IKDFVAAVSVGIVNDRILLDLNFEEDSAAQVDMNVVGTGSGRLSEVHTMGEEYSFTKDEL 64 Query: 217 FAMLNLAKDRIADLIKLQKDVISNEV 242 ML+LA+ I +LI+LQK + + Sbjct: 65 IKMLDLAQKGINELIELQKKLYVIQD 90 >d2ba0g2 d.101.1.1 (G:179-257) Exosome complex exonuclease 2, ECX2 {Archaeoglobus fulgidus [TaxId: 2234]} Length = 79 Score = 81.4 bits (201), Expect = 7e-17 Identities = 11/79 (13%), Positives = 30/79 (37%), Gaps = 1/79 (1%) Query: 157 LKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHF 216 ++ +++ ++ +VD E S D ++V +Q + + F Sbjct: 2 VRDLPVSVTSLIVGNKYLVDPSREEMSVGDTTLTITTDKDDNVVAMQK-SGGYLLDEKLF 60 Query: 217 FAMLNLAKDRIADLIKLQK 235 +L+++ + L + K Sbjct: 61 DELLDVSINCARKLREKFK 79 >d1r6la2 d.101.1.1 (A:152-239) Ribonuclease PH, domain 2 {Pseudomonas aeruginosa [TaxId: 287]} Length = 88 Score = 78.5 bits (193), Expect = 5e-16 Identities = 39/83 (46%), Positives = 54/83 (65%) Query: 157 LKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHF 216 LK VAA+S G+ G P++DLDY EDS + D N VMTD+G +EVQG+AE A F Sbjct: 5 LKQMVAAVSVGIYQGVPVLDLDYLEDSAAETDLNVVMTDAGGFIEVQGTAEGAPFRPAEL 64 Query: 217 FAMLNLAKDRIADLIKLQKDVIS 239 AML LA+ + +L +LQ+ ++ Sbjct: 65 NAMLELAQQGMQELFELQRAALA 87 >d2nn6c2 d.101.1.1 (C:188-276) Exosome complex exonuclease RRP43 {Human (Homo sapiens) [TaxId: 9606]} Length = 89 Score = 78.3 bits (193), Expect = 5e-16 Identities = 16/86 (18%), Positives = 31/86 (36%), Gaps = 2/86 (2%) Query: 157 LKGHVAAISCGMLCG-YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDH 215 ++ H A S + IVD E+ VM + G + + + + Sbjct: 2 IRTHPVATSFAVFDDTLLIVDPTGEEEHLATGTLTIVMDEEGKLCCLHKPGG-SGLTGAK 60 Query: 216 FFAMLNLAKDRIADLIKLQKDVISNE 241 ++ A R ++ KL +VI + Sbjct: 61 LQDCMSRAVTRHKEVKKLMDEVIKSM 86 >d1oysa2 d.101.1.1 (A:152-237) Ribonuclease PH, domain 2 {Bacillus subtilis [TaxId: 1423]} Length = 86 Score = 76.5 bits (188), Expect = 2e-15 Identities = 37/83 (44%), Positives = 54/83 (65%), Gaps = 1/83 (1%) Query: 157 LKGHVAAISCGMLCGYPI-VDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDH 215 + +AAIS G+ I +DL+Y EDS+ +VD N +MT SG VE+QG+ E ATFS++ Sbjct: 4 ITDFLAAISVGIDKEQGILLDLNYEEDSSAEVDMNVIMTGSGRFVELQGTGEEATFSRED 63 Query: 216 FFAMLNLAKDRIADLIKLQKDVI 238 +L LA+ I +LI QK+V+ Sbjct: 64 LNGLLGLAEKGIQELIDKQKEVL 86 >d1e3ha2 d.14.1.4 (A:3-151) Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domains 1 and 4 {Streptomyces antibioticus [TaxId: 1890]} Length = 149 Score = 72.1 bits (176), Expect = 4e-14 Identities = 24/129 (18%), Positives = 40/129 (31%), Gaps = 2/129 (1%) Query: 12 REISL-TRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRST 70 R I T R+++ A GS + D ++ +AT K P + + + Sbjct: 18 RTIRFETGRLARQAAGSAVAYLDDDTMVLSATTASKNPKDQLDF-FPLTVDVEERMYAAG 76 Query: 71 GNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAI 130 GR + R+I R LR Q++ + D AI Sbjct: 77 KIPGSFFRREGRPSEDAILTCRLIDRPLRPSFKKGLRNEIQVVATIMALNPDHLYDVVAI 136 Query: 131 TGAWVALHD 139 A + Sbjct: 137 NAASASTQL 145 >d2nn6d2 d.101.1.1 (D:147-235) Exosome complex exonuclease RRP46 {Human (Homo sapiens) [TaxId: 9606]} Length = 89 Score = 70.0 bits (171), Expect = 2e-13 Identities = 8/87 (9%), Positives = 29/87 (33%), Gaps = 3/87 (3%) Query: 157 LKGHVAAISCGMLC-GYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDH 215 ++ ++C + G ++D ++ F + ++ S+ + +S Sbjct: 2 MRALFCGVACALDSDGTLVLDPTSKQEKEARAVLTFALDSVER--KLLMSSTKGLYSDTE 59 Query: 216 FFAMLNLAKDRIADLIKLQKDVISNEV 242 L A+ + + ++ + Sbjct: 60 LQQCLAAAQAASQHVFRFYRESLQRRY 86 >d2nn6a2 d.101.1.1 (A:185-302) Exosome complex exonuclease RRP45 {Human (Homo sapiens) [TaxId: 9606]} Length = 118 Score = 69.5 bits (170), Expect = 3e-13 Identities = 15/87 (17%), Positives = 31/87 (35%), Gaps = 3/87 (3%) Query: 157 LKGHVAAISCGML--CGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQD 214 + +S Y +VD + E+ +D M I +Q S +D Sbjct: 3 IHHMPICVSFAFFQQGTYLLVDPNEREERVMDGLLVIAMNKHREICTIQSSGG-IMLLKD 61 Query: 215 HFFAMLNLAKDRIADLIKLQKDVISNE 241 +A ++A++ +L + N+ Sbjct: 62 QVLRCSKIAGVKVAEITELILKALEND 88 >d2je6a2 d.101.1.1 (A:192-275) Exosome complex exonuclease 2, ECX2 {Sulfolobus solfataricus [TaxId: 2287]} Length = 84 Score = 68.4 bits (167), Expect = 5e-13 Identities = 22/82 (26%), Positives = 34/82 (41%), Gaps = 1/82 (1%) Query: 157 LKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHF 216 L V IS + Y +VD D E+S +D +F T IV +Q S + + S Sbjct: 2 LNYPVVTISVAKVDKYLVVDPDLDEESIMDAKISFSYTPDLKIVGIQKSGKG-SMSLQDI 60 Query: 217 FAMLNLAKDRIADLIKLQKDVI 238 N A+ L++ K + Sbjct: 61 DQAENTARSTAVKLLEELKKHL 82 >d2nn6e2 d.101.1.1 (E:192-285) Exosome complex exonuclease RRP42 {Human (Homo sapiens) [TaxId: 9606]} Length = 94 Score = 68.0 bits (166), Expect = 7e-13 Identities = 11/85 (12%), Positives = 29/85 (34%), Gaps = 1/85 (1%) Query: 157 LKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHF 216 ++ ++ + +VD E++ +T G + ++ + + + Sbjct: 3 VENVPCIVTLCKIGYRHVVDATLQEEACSLASLLVSVTSKGVVTCMRKVGKG-SLDPESI 61 Query: 217 FAMLNLAKDRIADLIKLQKDVISNE 241 F M+ K L + V+ E Sbjct: 62 FEMMETGKRVGKVLHASLQSVVHKE 86 >d2je6b2 d.101.1.1 (B:156-241) Exosome complex exonuclease 1, ECX1 {Sulfolobus solfataricus [TaxId: 2287]} Length = 86 Score = 66.5 bits (162), Expect = 2e-12 Identities = 17/85 (20%), Positives = 36/85 (42%), Gaps = 4/85 (4%) Query: 157 LKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDS-GHIVEVQGSAERATFSQDH 215 ++ +A ++ G G I+DL+ E + D M S + Q + + + D Sbjct: 2 MRDLIAGVAVGKADGVIILDLNETEAMWGEADMPIAMMPSLNQVTLFQLN---GSMTPDE 58 Query: 216 FFAMLNLAKDRIADLIKLQKDVISN 240 F +LA I + L+++ + + Sbjct: 59 FRQAFDLAVKGINIIYNLEREALKS 83 >d2ba0d2 d.101.1.1 (D:154-252) Exosome complex exonuclease 1, ECX1 {Archaeoglobus fulgidus [TaxId: 2234]} Length = 99 Score = 61.6 bits (149), Expect = 6e-11 Identities = 16/85 (18%), Positives = 34/85 (40%), Gaps = 1/85 (1%) Query: 157 LKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGH-IVEVQGSAERATFSQDH 215 +KG + +++ G G ++D ED+ + D F I + ++D Sbjct: 2 MKGMITSVAVGKADGQLVLDPMKEEDNFGEADMPFAFLIRNGKIESIALLQMDGRMTRDE 61 Query: 216 FFAMLNLAKDRIADLIKLQKDVISN 240 + LAK + ++Q++ I Sbjct: 62 VKQAIELAKKGALQIYEMQREAILR 86 >d2nn6b2 d.101.1.1 (B:151-240) Exosome complex exonuclease RRP41 {Human (Homo sapiens) [TaxId: 9606]} Length = 90 Score = 58.9 bits (142), Expect = 3e-10 Identities = 19/85 (22%), Positives = 34/85 (40%), Gaps = 4/85 (4%) Query: 157 LKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANF-VMTDSGHIVEVQGSAERATFSQDH 215 ++ V A S G + G + DL + E++ ++ SG I ++ A +DH Sbjct: 2 MRDFVCACSAGFVDGTALADLSHVEEAAGGPQLALALLPASGQIALLEMDAR---LHEDH 58 Query: 216 FFAMLNLAKDRIADLIKLQKDVISN 240 +L A D+ L V+ Sbjct: 59 LERVLEAAAQAARDVHTLLDRVVRQ 83 >d2nn6f2 d.101.1.1 (F:176-270) Exosome complex exonuclease MTR3 {Human (Homo sapiens) [TaxId: 9606]} Length = 95 Score = 55.0 bits (132), Expect = 5e-09 Identities = 9/87 (10%), Positives = 24/87 (27%), Gaps = 6/87 (6%) Query: 157 LKGHVAAISCGM---LCGYPIVDLDYGEDSTIDVDANF-VMTDSGHIVEVQGSAERATFS 212 + V + ++D E+ +M + + GS E Sbjct: 1 MYDLVVGCGLSLAPGPAPTWLLDPTRLEEERAAAGLTVALMPVLNQVAGLLGSGEG--GL 58 Query: 213 QDHFFAMLNLAKDRIADLIKLQKDVIS 239 + + + L + L + + + Sbjct: 59 TESWAEAVRLGLEGCQRLYPVLQQSLV 85 >d2zdra2 c.1.10.6 (A:2-281) Capsule biosynthesis protein SiaC, N-terminal domain {Neisseria meningitidis [TaxId: 487]} Length = 280 Score = 25.3 bits (54), Expect = 5.0 Identities = 7/24 (29%), Positives = 13/24 (54%) Query: 212 SQDHFFAMLNLAKDRIADLIKLQK 235 S F M++ A + A+++K Q Sbjct: 32 SLKTAFEMVDAAYNAGAEVVKHQT 55 >d1ivha1 a.29.3.1 (A:242-392) Isovaleryl-CoA dehydrogenase, C-domain {Human (Homo sapiens) [TaxId: 9606]} Length = 151 Score = 25.0 bits (53), Expect = 6.4 Identities = 11/39 (28%), Positives = 17/39 (43%), Gaps = 1/39 (2%) Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRM-IGRAL 98 G + R R+A G + E++R+ IGRA Sbjct: 110 GGNGYINDFPMGRFLRDAKLYEIGAGTSEVRRLVIGRAF 148 Database: scop70_1_75 Posted date: Mar 27, 2010 6:21 PM Number of letters in database: 2,407,596 Number of sequences in database: 13,730 Lambda K H 0.321 0.134 0.393 Gapped Lambda K H 0.267 0.0433 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 13730 Number of Hits to DB: 859,864 Number of extensions: 38054 Number of successful extensions: 154 Number of sequences better than 10.0: 1 Number of HSP's gapped: 130 Number of HSP's successfully gapped: 33 Length of query: 242 Length of database: 2,407,596 Length adjustment: 83 Effective length of query: 159 Effective length of database: 1,268,006 Effective search space: 201612954 Effective search space used: 201612954 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 52 (24.6 bits)