BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254780631|ref|YP_003065044.1| hypothetical protein
CLIBASIA_02590 [Candidatus Liberibacter asiaticus str. psy62]
         (62 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254780631|ref|YP_003065044.1| hypothetical protein CLIBASIA_02590 [Candidatus Liberibacter
          asiaticus str. psy62]
          Length = 62

 Score =  128 bits (322), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 62/62 (100%), Positives = 62/62 (100%)

Query: 1  MSGCSDNIDREHKAGIEVEKNAITTKDNEKKRNPFQGRSSRNPCQGGDIKAPETVVEIKT 60
          MSGCSDNIDREHKAGIEVEKNAITTKDNEKKRNPFQGRSSRNPCQGGDIKAPETVVEIKT
Sbjct: 1  MSGCSDNIDREHKAGIEVEKNAITTKDNEKKRNPFQGRSSRNPCQGGDIKAPETVVEIKT 60

Query: 61 DL 62
          DL
Sbjct: 61 DL 62


>gi|254780206|ref|YP_003064619.1| phosphoribosylamine--glycine ligase [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 424

 Score = 20.8 bits (42), Expect = 4.9,   Method: Composition-based stats.
 Identities = 7/14 (50%), Positives = 11/14 (78%)

Query: 24  TTKDNEKKRNPFQG 37
           T +  +K++NPFQG
Sbjct: 248 TIEGMQKEQNPFQG 261


>gi|254781005|ref|YP_003065418.1| hypothetical protein CLIBASIA_04530 [Candidatus Liberibacter
          asiaticus str. psy62]
          Length = 85

 Score = 20.4 bits (41), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 3/37 (8%)

Query: 1  MSGCSDNIDREHKAGIEVEKNAITTKDNEKKRNPFQG 37
          MSGCS+ +D E+  GI  E  A   ++ +K   P  G
Sbjct: 18 MSGCSETLDPEN--GIR-ELGARMKQERKKADQPIGG 51


>gi|254780596|ref|YP_003065009.1| ABC transporter nucleotide binding/ATPase protein [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 438

 Score = 20.0 bits (40), Expect = 6.7,   Method: Composition-based stats.
 Identities = 7/15 (46%), Positives = 10/15 (66%)

Query: 22  AITTKDNEKKRNPFQ 36
           A+ TK  EK+ NP +
Sbjct: 256 ALMTKKEEKRLNPLE 270


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.308    0.129    0.366 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 39,596
Number of Sequences: 1233
Number of extensions: 1213
Number of successful extensions: 7
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of query: 62
length of database: 328,796
effective HSP length: 34
effective length of query: 28
effective length of database: 286,874
effective search space:  8032472
effective search space used:  8032472
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (20.3 bits)
S2: 31 (16.5 bits)