RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddA
21,609 sequences; 6,263,737 total letters
Searching..................................................done
Query= gi|254780633|ref|YP_003065046.1| creatinine amidohydrolase
[Candidatus Liberibacter asiaticus str. psy62]
(267 letters)
>gnl|CDD|145669 pfam02633, Creatininase, Creatinine amidohydrolase. Creatinine
amidohydrolase (EC:3.5.2.10), or creatininase, catalyses
the hydrolysis of creatinine to creatine.
Length = 235
Score = 237 bits (608), Expect = 2e-63
Identities = 91/236 (38%), Positives = 125/236 (52%), Gaps = 13/236 (5%)
Query: 16 ADARKDWIVVLPLGAYEQHGPHLPMNTDTIIAAGLAERIKSILPPRLPVTCMPVEPIGYS 75
A ++ +LP+G+ EQHGPHLP+ TDT+IA +AER+ L V +P P GYS
Sbjct: 11 ALLKRGDTAILPVGSTEQHGPHLPLGTDTLIAEAIAERVAERLGD---VLVLPTIPYGYS 67
Query: 76 IEHMYVDGTKTLTYAEAIEHWLAIIDAIRKMGIRKIVILNAHGGNSPLVSIVSTEARMRF 135
EHM GT +L+ I I ++ + G R++VI+N HGGN L+ + E R +
Sbjct: 68 PEHMGFPGTISLSPETLIALLRDIGRSLARHGFRRLVIVNGHGGNIALLQEAARELRAEY 127
Query: 136 -SMLVVSTSWSRFTIPQGIISFPETEIGIHGGEIETSMMLALAPHLVKMDLAENFSSRQS 194
M VV SW R P+G+ E GIH GE ETS+MLAL P LV+MD
Sbjct: 128 PDMAVVPCSWWRLGPPEGLAGAFEDAEGIHAGEAETSLMLALHPELVRMDR--------- 178
Query: 195 EFLRNFKYLRAHGSHSFGWSMKDLNPKGVVGNAMDATVKKGEGLLSYFANCFIQLL 250
E L G W +DL+P GV+G+ A+ +KGE LL + ++LL
Sbjct: 179 EGGEPDALLSLGGGALLAWDARDLSPDGVIGDPTLASAEKGERLLEAAVDGLVELL 234
>gnl|CDD|31592 COG1402, COG1402, Uncharacterized protein, putative amidase
[General function prediction only].
Length = 250
Score = 186 bits (474), Expect = 4e-48
Identities = 85/239 (35%), Positives = 127/239 (53%), Gaps = 11/239 (4%)
Query: 21 DWIVVLPLGAYEQHGPHLPMNTDTIIAAGLAERIKSILPPRLPVTCMPVEPIGYSIEHMY 80
I++LP+G+ EQHGPHLP+ TD +IA +AE++ L +P G S+EHM
Sbjct: 19 TTIIILPVGSTEQHGPHLPLGTDALIAEAIAEKVAERLGAE--ALVLPTIYYGVSLEHMG 76
Query: 81 VDGTKTLTYAEAIEHWLAIIDAIRKMGIRKIVILNAHGGNSPLVSIVSTEARMRFSMLVV 140
GT TL+ I + +++++ + G RK VI+N HGGNS + IV+ E R L V
Sbjct: 77 FPGTITLSPETLIALLVELVESLARHGFRKFVIVNGHGGNSAALEIVARELRAELGDLAV 136
Query: 141 STSWSRFTIPQGIISFPETEIGIHGGEIETSMMLALAPHLVKMDLA-ENFSSRQSEFLRN 199
+ + + P+GI GIH G+IETS+ML L P LV M+ A + F Q+
Sbjct: 137 AVFFP-WQRPEGIWGLLSGIYGIHAGDIETSLMLHLGPELVDMERAVDPFPIEQAPESPL 195
Query: 200 FKYLRAHGSHSFGWSMKDLNPKGVVG-NAMDATVKKGEGLLSYFANCFIQLLNDINSFD 257
G H F W + + GVVG + AT +KGE +L + ++L+ + +FD
Sbjct: 196 V------GLHPFAWDARAFSKDGVVGSDPTLATAEKGEKILEAAVDGLVELIREFMAFD 248
>gnl|CDD|73366 cd00429, RPE, Ribulose-5-phosphate 3-epimerase (RPE). This enzyme
catalyses the interconversion of D-ribulose 5-phosphate
(Ru5P) into D-xylulose 5-phosphate, as part of the
Calvin cycle (reductive pentose phosphate pathway) in
chloroplasts and in the oxidative pentose phosphate
pathway. In the Calvin cycle Ru5P is phosphorylated by
phosphoribulose kinase to ribulose-1,5-bisphosphate,
which in turn is used by RubisCO
(ribulose-1,5-bisphosphate carboxylase/oxygenase) to
incorporate CO2 as the central step in carbohydrate
synthesis..
Length = 211
Score = 30.8 bits (70), Expect = 0.45
Identities = 19/65 (29%), Positives = 30/65 (46%), Gaps = 2/65 (3%)
Query: 52 ERIKSILPPRLPVTCMPVEPIGYSIEHMYVDGTKTLT-YAEAIEHWLAIIDAIRKMGIRK 110
+ ++ L V M P Y IE G +T +AEA +H I I+++G++
Sbjct: 50 KALRKHTDLPLDVHLMVENPERY-IEAFAKAGADIITFHAEATDHLHRTIQLIKELGMKA 108
Query: 111 IVILN 115
V LN
Sbjct: 109 GVALN 113
>gnl|CDD|163613 cd00144, MPP_PPP_family, phosphoprotein phosphatases of the
metallophosphatase superfamily, metallophosphatase
domain. The PPP (phosphoprotein phosphatase) family is
one of two known protein phosphatase families specific
for serine and threonine. This family includes: PP1,
PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1,
RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP
catalytic domain is defined by three conserved motifs
(-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family
is ancient with members found in all eukaryotes, and in
most bacterial and archeal genomes. Dephosphorylation
of phosphoserines and phosphothreonines on target
proteins plays a central role in the regulation of many
cellular processes. PPPs belong to the
metallophosphatase (MPP) superfamily. MPPs are
functionally diverse, but all share a conserved domain
with an active site consisting of two metal ions
(usually manganese, iron, or zinc) coordinated with
octahedral geometry by a cage of histidine, aspartate,
and asparagine residues. The MPP superfamily includes:
Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat
debranching enzymes, YfcE-like phosphodiesterases,
purple acid phosphatases (PAPs), YbbF-like
UDP-2,3-diacylglucosamine hydrolases, and acid
sphingomyelinases (ASMases). The conserved domain is a
double beta-sheet sandwich with a di-metal active site
made up of residues located at the C-terminal side of
the sheets. This domain is thought to allow for
productive metal coordination.
Length = 225
Score = 30.1 bits (68), Expect = 0.62
Identities = 18/94 (19%), Positives = 29/94 (30%), Gaps = 4/94 (4%)
Query: 73 GYSIEHMYVDGTKTLTYAEAIEHWLAIIDAIRKMGIRKIV----ILNAHGGNSPLVSIVS 128
G+ E ++ GT L + W D + + ++ +L HGG SP + +
Sbjct: 75 GFYDEDEWIGGTLRLLKKLGEDLWEEFNDVFFYLPLAALIETKKVLCVHGGLSPGLPLEE 134
Query: 129 TEARMRFSMLVVSTSWSRFTIPQGIISFPETEIG 162
L WS G G
Sbjct: 135 QIKEEPEDQLPEDLLWSDPLELPGGFGSSRRGGG 168
>gnl|CDD|36470 KOG1256, KOG1256, KOG1256, Long-chain acyl-CoA synthetases
(AMP-forming) [Lipid transport and metabolism].
Length = 691
Score = 28.3 bits (63), Expect = 2.4
Identities = 20/84 (23%), Positives = 34/84 (40%), Gaps = 8/84 (9%)
Query: 61 RLPVTCMPVEP-IGYSIEHMYVDGTKTLTYAEAIEHWLAIIDAIRKMGIR---KIVILNA 116
R V P +G + + LTY + E + +RK+G++ K+ I
Sbjct: 82 RRSVEKSGNGPMLGTRVIVDGKGPYEWLTYKQVYERAENLGSGLRKLGVKEDSKVGIY-- 139
Query: 117 HGGNSPLVSIVSTEARMRFSMLVV 140
N P I+S A +S++ V
Sbjct: 140 -AFNRP-EWIISEMACYAYSLVNV 161
>gnl|CDD|133024 cd04181, NTP_transferase, NTP_transferases catalyze the transfer of
nucleotides onto phosphosugars. Nucleotidyltransferases
transfer nucleotides onto phosphosugars. The enzyme
family includes Alpha-D-Glucose-1-Phosphate
Cytidylyltransferase, Mannose-1-phosphate
guanyltransferase, and Glucose-1-phosphate
thymidylyltransferase. The products are activated sugars
that are precursors for synthesis of lipopolysaccharide,
glycolipids and polysaccharides.
Length = 217
Score = 27.9 bits (63), Expect = 2.7
Identities = 17/80 (21%), Positives = 33/80 (41%), Gaps = 30/80 (37%)
Query: 45 IIAAGLAERIKSI---LP-PRLPVTCMPVEPIGYSIEHMYVDGTKTLTYAEAIEHWLAII 100
I+AAG R++ + P P LP+ P+ +E+ II
Sbjct: 3 ILAAGKGTRLRPLTDTRPKPLLPIAGKPI-----------------------LEY---II 36
Query: 101 DAIRKMGIRKIVILNAHGGN 120
+ + + GI +I+++ + G
Sbjct: 37 ERLARAGIDEIILVVGYLGE 56
>gnl|CDD|31400 COG1207, GlmU, N-acetylglucosamine-1-phosphate uridyltransferase
(contains nucleotidyltransferase and I-patch
acetyltransferase domains) [Cell envelope biogenesis,
outer membrane].
Length = 460
Score = 27.4 bits (61), Expect = 4.2
Identities = 22/76 (28%), Positives = 30/76 (39%), Gaps = 25/76 (32%)
Query: 45 IIAAGLAERIKSILPPRLPVTCMPVEPIGYSIEHMYVDGTKTLTYAEAIEHWLAIIDAIR 104
I+AAG R+KS LP L G + +EH +IDA R
Sbjct: 7 ILAAGKGTRMKSDLPKVLHPVA------GKPM----------------LEH---VIDAAR 41
Query: 105 KMGIRKIVILNAHGGN 120
+G IV++ HG
Sbjct: 42 ALGPDDIVVVVGHGAE 57
>gnl|CDD|133044 cd06422, NTP_transferase_like_1, NTP_transferase_like_1 is a member
of the nucleotidyl transferase family. This is a
subfamily of nucleotidyl transferases. Nucleotidyl
transferases transfer nucleotides onto phosphosugars.
The activated sugars are precursors for synthesis of
lipopolysaccharide, glycolipids and polysaccharides.
Other subfamilies of nucleotidyl transferases include
Alpha-D-Glucose-1-Phosphate Cytidylyltransferase,
Mannose-1-phosphate guanyltransferase, and
Glucose-1-phosphate thymidylyltransferase.
Length = 221
Score = 27.2 bits (61), Expect = 4.7
Identities = 23/77 (29%), Positives = 32/77 (41%), Gaps = 31/77 (40%)
Query: 45 IIAAGLAERIKSI---LP-PRLPVTCMPVEPIGYSIEHMYVDGTKTLTYAEAIEHWLAII 100
I+AAGL R++ + P P +PV K L I+H L
Sbjct: 4 ILAAGLGTRMRPLTDTRPKPLVPV------------------AGKPL-----IDHAL--- 37
Query: 101 DAIRKMGIRKIVILNAH 117
D + GIR+IV+ N H
Sbjct: 38 DRLAAAGIRRIVV-NTH 53
>gnl|CDD|32275 COG2092, EFB1, Translation elongation factor EF-1beta [Translation,
ribosomal structure and biogenesis].
Length = 88
Score = 27.1 bits (60), Expect = 5.0
Identities = 15/68 (22%), Positives = 31/68 (45%), Gaps = 3/68 (4%)
Query: 38 LPMNTDTIIAAGLAERIKSILPPRLPVTCMPVEPIGYSIE--HMYVDGTKTLTYAEAIEH 95
+P + + + L E+IK LP + + EPI + ++ +YV +A+E
Sbjct: 11 MPDDPEVDLE-ELEEKIKEKLPEGYELIKIEEEPIAFGLKALKLYVVVEDKEGGTDALEE 69
Query: 96 WLAIIDAI 103
L ++ +
Sbjct: 70 ALEEVEGV 77
>gnl|CDD|153312 cd07628, BAR_Atg24p, The Bin/Amphiphysin/Rvs (BAR) domain of yeast
Sorting Nexin Atg24p. BAR domains are dimerization,
lipid binding and curvature sensing modules found in
many different proteins with diverse functions. Sorting
nexins (SNXs) are Phox homology (PX) domain containing
proteins that are involved in regulating membrane
traffic and protein sorting in the endosomal system.
SNXs differ from each other in their lipid-binding
specificity, subcellular localization and specific
function in the endocytic pathway. A subset of SNXs also
contain BAR domains. The PX-BAR structural unit
determines the specific membrane targeting of SNXs.
Atg24p is involved in membrane fusion events at the
vacuolar surface during pexophagy. BAR domains form
dimers that bind to membranes, induce membrane bending
and curvature, and may also be involved in
protein-protein interactions.
Length = 185
Score = 26.8 bits (60), Expect = 5.7
Identities = 11/43 (25%), Positives = 20/43 (46%), Gaps = 3/43 (6%)
Query: 179 HLVKMDLAEN---FSSRQSEFLRNFKYLRAHGSHSFGWSMKDL 218
L ++ E FS S+F + + L + ++ S+KDL
Sbjct: 53 SLESGEITEPFKIFSESLSQFSTSLRVLNKYTDENYLTSLKDL 95
>gnl|CDD|147394 pfam05185, PRMT5, PRMT5 arginine-N-methyltransferase. The human
homologue of yeast Skb1 (Shk1 kinase-binding protein 1)
is PRMT5, an arginine-N-methyltransferase. These
proteins appear to be key mitotic regulators. They play
a role in Jak signalling in higher eukaryotes.
Length = 447
Score = 26.8 bits (60), Expect = 5.7
Identities = 14/55 (25%), Positives = 19/55 (34%), Gaps = 3/55 (5%)
Query: 89 YAEAIEHWLAIIDAIRKMGIRKIVILNAHGGNSPLVSIV---STEARMRFSMLVV 140
Y AI L +K +VIL G PLV + E + + V
Sbjct: 166 YERAIRKALLDWVPEKKKTSGTLVILVVGAGRGPLVDRALRAAEETGRKVKIYAV 220
>gnl|CDD|144433 pfam00834, Ribul_P_3_epim, Ribulose-phosphate 3 epimerase family.
This enzyme catalyses the conversion of D-ribulose
5-phosphate into D-xylulose 5-phosphate.
Length = 201
Score = 26.9 bits (60), Expect = 6.8
Identities = 12/38 (31%), Positives = 21/38 (55%), Gaps = 3/38 (7%)
Query: 89 YAEAIEHWLAIIDAIRKMGIRKIVILNAHGGNSPLVSI 126
+AEA +H I I++ G + ++LN +PL +I
Sbjct: 87 HAEASDHPHRTIQLIKEAGAKAGLVLNPA---TPLDAI 121
>gnl|CDD|133075 cd03864, M14_CPN, Peptidase M14 Carboxypeptidase N (CPN, also known
as kininase I, creatine kinase conversion factor, plasma
carboxypeptidase B, arginine carboxypeptidase, and
protaminase; EC 3.4.17.3) is an extracellular
glycoprotein synthesized in the liver and released into
the blood, where it is present in high concentrations.
CPN belongs to the N/E subfamily of the M14 family of
metallocarboxypeptidases (MCPs).The M14 family are
zinc-binding carboxypeptidases (CPs) which hydrolyze
single, C-terminal amino acids from polypeptide chains,
and have a recognition site for the free C-terminal
carboxyl group, which is a key determinant of
specificity. CPN plays an important role in protecting
the body from excessive buildup of potentially
deleterious peptides that normally act as local
autocrine or paracrine hormones. It specifically removes
C-terminal basic residues. As CPN can cleave lysine more
avidly than arginine residues it is also called lysine
carboxypeptidase. CPN substrates include peptides found
in the bloodstream, such as kinins (e.g. bradykinin,
kalinin, met-lys-bradykinin), complement anaphylatoxins
and creatine kinase MM (CK-MM). By removing just one
amino acid, CPN can alter peptide activity and receptor
binding. For example Bradykinin, a nine-residue peptide
released from kiningen in response to tissue injury
which is inactivated by CPN, anaphylatoxins which are
regulated by CPN by the cleaving and removal of their
C-terminal arginines resulting in a reduction in their
biological activities of 10-100-fold, and creatine
kinase MM, a cytosolic enzyme that catalyzes the
reversible transfer of a phosphate group from ATP to
creatine, and is regulated by CPN by the cleavage of
C-terminal lysines. Like the other N/E subfamily
members, two surface loops surrounding the active-site
groove restrict access to the catalytic center, thus
restricting larger protein carboxypeptidase inhibitors
from inhibiting CPN.
Length = 392
Score = 26.4 bits (58), Expect = 7.9
Identities = 15/46 (32%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
Query: 202 YLRAHGSHSFGWSMKDLNPKGVVGNAMDATVKKGEGLLSY-FANCF 246
Y AHG GW+ D +G+ A ++ KG +Y NCF
Sbjct: 234 YSYAHGWMHKGWNCGDYFDEGITNGASWYSLSKGMQDFNYLHTNCF 279
>gnl|CDD|37132 KOG1921, KOG1921, KOG1921, Endonuclease III [Replication,
recombination and repair].
Length = 286
Score = 26.5 bits (58), Expect = 8.9
Identities = 19/89 (21%), Positives = 34/89 (38%), Gaps = 14/89 (15%)
Query: 51 AERIKSILPPRLPVTCMPVEPIGYSIEHMYVDGTKTLTYAEAIEHWLAIIDAIRKMGIRK 110
R + +P P EP+G + + E+WL + + IRKM +
Sbjct: 9 IVRRRVNVPNTWSTPADPSEPMGSA-------------SGKPPENWLEVYERIRKMRSKI 55
Query: 111 IVILNAHGGNSPLVSIVSTEARMRFSMLV 139
+ ++ G + + R RF +LV
Sbjct: 56 VAPVDTMGCSRIPSLKADPKER-RFQVLV 83
>gnl|CDD|35094 COG5535, RAD4, DNA repair protein RAD4 [DNA replication,
recombination, and repair].
Length = 650
Score = 26.2 bits (57), Expect = 9.2
Identities = 7/38 (18%), Positives = 15/38 (39%)
Query: 186 AENFSSRQSEFLRNFKYLRAHGSHSFGWSMKDLNPKGV 223
+++S R+S + + L G W + G+
Sbjct: 127 FKDWSVRKSAHIMDSTCLLLLGFIRNLWFRSKMLSNGL 164
>gnl|CDD|35123 COG5564, COG5564, Predicted TIM-barrel enzyme, possibly a
dioxygenase [General function prediction only].
Length = 276
Score = 26.1 bits (57), Expect = 9.3
Identities = 14/45 (31%), Positives = 21/45 (46%), Gaps = 4/45 (8%)
Query: 81 VDGTKTLTYAEAIEHWLAIIDAIRKMGIRKIVILNAHGGNSPLVS 125
+ L+ A+ +E +A R G+RK VI HGG P+
Sbjct: 192 IGARSALSLADCVELIELAAEAAR--GVRKDVIPLCHGG--PISM 232
Database: CddA
Posted date: Feb 4, 2011 9:38 PM
Number of letters in database: 6,263,737
Number of sequences in database: 21,609
Lambda K H
0.322 0.137 0.414
Gapped
Lambda K H
0.267 0.0758 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 3,362,280
Number of extensions: 177961
Number of successful extensions: 498
Number of sequences better than 10.0: 1
Number of HSP's gapped: 490
Number of HSP's successfully gapped: 28
Length of query: 267
Length of database: 6,263,737
Length adjustment: 92
Effective length of query: 175
Effective length of database: 4,275,709
Effective search space: 748249075
Effective search space used: 748249075
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (25.3 bits)