BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254780633|ref|YP_003065046.1| creatinine amidohydrolase
[Candidatus Liberibacter asiaticus str. psy62]
         (267 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254780633|ref|YP_003065046.1| creatinine amidohydrolase [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 267

 Score =  554 bits (1427), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 267/267 (100%), Positives = 267/267 (100%)

Query: 1   MNPLIIFTDNSLPLCADARKDWIVVLPLGAYEQHGPHLPMNTDTIIAAGLAERIKSILPP 60
           MNPLIIFTDNSLPLCADARKDWIVVLPLGAYEQHGPHLPMNTDTIIAAGLAERIKSILPP
Sbjct: 1   MNPLIIFTDNSLPLCADARKDWIVVLPLGAYEQHGPHLPMNTDTIIAAGLAERIKSILPP 60

Query: 61  RLPVTCMPVEPIGYSIEHMYVDGTKTLTYAEAIEHWLAIIDAIRKMGIRKIVILNAHGGN 120
           RLPVTCMPVEPIGYSIEHMYVDGTKTLTYAEAIEHWLAIIDAIRKMGIRKIVILNAHGGN
Sbjct: 61  RLPVTCMPVEPIGYSIEHMYVDGTKTLTYAEAIEHWLAIIDAIRKMGIRKIVILNAHGGN 120

Query: 121 SPLVSIVSTEARMRFSMLVVSTSWSRFTIPQGIISFPETEIGIHGGEIETSMMLALAPHL 180
           SPLVSIVSTEARMRFSMLVVSTSWSRFTIPQGIISFPETEIGIHGGEIETSMMLALAPHL
Sbjct: 121 SPLVSIVSTEARMRFSMLVVSTSWSRFTIPQGIISFPETEIGIHGGEIETSMMLALAPHL 180

Query: 181 VKMDLAENFSSRQSEFLRNFKYLRAHGSHSFGWSMKDLNPKGVVGNAMDATVKKGEGLLS 240
           VKMDLAENFSSRQSEFLRNFKYLRAHGSHSFGWSMKDLNPKGVVGNAMDATVKKGEGLLS
Sbjct: 181 VKMDLAENFSSRQSEFLRNFKYLRAHGSHSFGWSMKDLNPKGVVGNAMDATVKKGEGLLS 240

Query: 241 YFANCFIQLLNDINSFDVSIFDKDVQK 267
           YFANCFIQLLNDINSFDVSIFDKDVQK
Sbjct: 241 YFANCFIQLLNDINSFDVSIFDKDVQK 267


>gi|254780638|ref|YP_003065051.1| molecular chaperone protein DnaJ [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 384

 Score = 28.1 bits (61), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 23/99 (23%), Positives = 41/99 (41%), Gaps = 4/99 (4%)

Query: 124 VSIVSTEARMRFSMLVVSTSWSRFTIPQGIISFPETEIGIHGGEIETSMMLALAPHLVKM 183
           +SIV+      F +  +  + SR TIP+G  +  +  +   G  +  S         V++
Sbjct: 280 ISIVTVAMGGTFDVATLDATHSRVTIPEGTQTGKQFRLKGKGMPVINSGRKGDLYVQVQV 339

Query: 184 DLAENFSSRQSEFLRNFKYLRAHG----SHSFGWSMKDL 218
           +  +  + RQ E L  F+ + +      S  F   MKD 
Sbjct: 340 ETPQKLNKRQRELLEEFEQISSQDNNPQSTGFFARMKDF 378


>gi|254781047|ref|YP_003065460.1| AFG1-family ATPase [Candidatus Liberibacter asiaticus str. psy62]
          Length = 404

 Score = 26.2 bits (56), Expect = 0.55,   Method: Compositional matrix adjust.
 Identities = 14/55 (25%), Positives = 28/55 (50%), Gaps = 10/55 (18%)

Query: 10  NSLPLCADARKDWI--VVLPLGAYEQHGPHLPMNTDTIIAAGLAERIKSILPPRL 62
           N +PL  + RKDWI   ++ +  + +H   L ++++        E I+ + P +L
Sbjct: 305 NDIPLLKEDRKDWIKRFIMLIDVFYEHKIGLIISSE--------ENIEDLFPYKL 351


>gi|254780695|ref|YP_003065108.1| flagellar MS-ring protein [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 563

 Score = 22.3 bits (46), Expect = 7.9,   Method: Compositional matrix adjust.
 Identities = 9/33 (27%), Positives = 20/33 (60%)

Query: 235 GEGLLSYFANCFIQLLNDINSFDVSIFDKDVQK 267
            +GL S  +N   +L + +NSF ++ F +++ +
Sbjct: 99  AQGLPSSSSNSGYELFDKVNSFGLTSFMQEITR 131


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.322    0.137    0.414 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 172,814
Number of Sequences: 1233
Number of extensions: 6991
Number of successful extensions: 13
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 9
Number of HSP's gapped (non-prelim): 5
length of query: 267
length of database: 328,796
effective HSP length: 72
effective length of query: 195
effective length of database: 240,020
effective search space: 46803900
effective search space used: 46803900
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 37 (18.9 bits)