HHsearch alignment for GI: 254780634 and conserved domain: COG0270
>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair].
Probab=91.09 E-value=0.36 Score=27.69 Aligned_cols=83 Identities=17% Similarity=0.202 Sum_probs=55.5
Q ss_pred CCEEEECCCCCCHHHHHHHHHHCCCCEEHHHHCCHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCC-CCCEEEECCCCC
Q ss_conf 6258601346882799999986168810055249899999999987502886088215543445723-246789627544
Q gi|254780634|r 232 SSQILDFCAGGGGKTLALSMLLNNKGQIHAWDNNKSRMAPIVARIKRAGIHNVQLHSSWESLRNLQE-HFTTVLVDAPCS 310 (429)
Q Consensus 232 g~~vLD~CAapGGKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~~~~~~~~~~-~fd~vl~DaPCS 310 (429)
T Consensus 3 ~~~~idLFsG~GG~~lGf~~a--gf~~~~a~Eid~~a~~ty~~n~~~-~~~-~~~di~~~~~~~~~~~~~DvligGpPCQ 78 (328)
T COG0270 3 KMKVIDLFAGIGGLSLGFEEA--GFEIVFANEIDPPAVATYKANFPH-GDI-ILGDIKELDGEALRKSDVDVLIGGPPCQ 78 (328)
T ss_pred CCEEEEECCCCCHHHHHHHHC--CCEEEEEEECCHHHHHHHHHHCCC-CCC-HHHHHHHHCHHHCCCCCCCEEEECCCCC
T ss_conf 854998658756588999864--984899874698899999985888-742-0303766052223556763798589972
Q ss_pred CCHHHHHH
Q ss_conf 50444442
Q gi|254780634|r 311 GTGTWRRR 318 (429)
Q Consensus 311 g~G~~rr~ 318 (429)
T Consensus 79 ~FS~aG~r 86 (328)
T COG0270 79 DFSIAGKR 86 (328)
T ss_pred CHHHHCCC
T ss_conf 13340776