HHsearch alignment for GI: 254780634 and conserved domain: COG0421
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism].
Probab=93.90 E-value=0.17 Score=29.83 Aligned_cols=123 Identities=17% Similarity=0.215 Sum_probs=79.9
Q ss_pred CCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHCCCCEEHHHHCCHHHHHHHHHHHHHCC--CC--CCEEE--ECCCCCCC
Q ss_conf 42112366666258601346882799999986168810055249899999999987502--88--60882--15543445
Q gi|254780634|r 222 IVSNLTAITNSSQILDFCAGGGGKTLALSMLLNNKGQIHAWDNNKSRMAPIVARIKRAG--IH--NVQLH--SSWESLRN 295 (429)
Q Consensus 222 l~~~~l~~~~g~~vLD~CAapGGKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g--~~--~v~~~--~~~~~~~~ 295 (429)
T Consensus 68 h~~~~ah~~p-k~VLiiGgGdG~tlRevlkh~-~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~ 145 (282)
T COG0421 68 HVPLLAHPNP-KRVLIIGGGDGGTLREVLKHL-PVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRD 145 (282)
T ss_pred HCHHHHCCCC-CEEEEECCCCCHHHHHHHHCC-CCCEEEEEECCHHHHHHHHHHCCCCCCCCCCCCEEEEECCHHHHHHH
T ss_conf 0306437997-769998897669999998368-84337999708899999998666754335797368996107999874
Q ss_pred CCCCCCEEEECCC-CCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHH
Q ss_conf 7232467896275-445044444223667249678999999878999999996089838999775888242
Q gi|254780634|r 296 LQEHFTTVLVDAP-CSGTGTWRRRPDIKWRLSQKNLIERTEEQKKILEESAQFVRPEGYLVYITCSILPEE 365 (429)
Q Consensus 296 ~~~~fd~vl~DaP-CSg~G~~rr~Pe~~w~~~~~~~~~~~~lQ~~iL~~a~~~lk~gG~lvYsTCS~~~~E 365 (429)
T Consensus 146 ~~~~fDvIi~D~tdp~gp~~-------------------~Lft~eFy~~~~~~L~~~Gi~v~q~~~~~~~~ 197 (282)
T COG0421 146 CEEKFDVIIVDSTDPVGPAE-------------------ALFTEEFYEGCRRALKEDGIFVAQAGSPFLQD 197 (282)
T ss_pred CCCCCCEEEECCCCCCCCCC-------------------CCCCHHHHHHHHHHCCCCCEEEEECCCCCCCH
T ss_conf 88767789985889988430-------------------23779999999986288968999447843240