HHsearch alignment for GI: 254780634 and conserved domain: COG1041
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair].
Probab=98.76 E-value=8.7e-08 Score=72.68 Aligned_cols=138 Identities=16% Similarity=0.211 Sum_probs=102.1
Q ss_pred CCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHCCCCEEHHHHCCHHHHHHHHHHHHHCCCCCCEEEEC-CCCCCCCCC-C
Q ss_conf 42112366666258601346882799999986168810055249899999999987502886088215-543445723-2
Q gi|254780634|r 222 IVSNLTAITNSSQILDFCAGGGGKTLALSMLLNNKGQIHAWDNNKSRMAPIVARIKRAGIHNVQLHSS-WESLRNLQE-H 299 (429)
Q Consensus 222 l~~~~l~~~~g~~vLD~CAapGGKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~-~~~~~~~~~-~ 299 (429)
T Consensus 188 ~mVNLa~v~~G~~vlDPFcGTGgiLiE-agl~G--~~viG~Did~~mv~gak~Nl~~y~i~~~~~~~~~Da~~lpl~~~~ 264 (347)
T COG1041 188 AMVNLARVKRGELVLDPFCGTGGILIE-AGLMG--ARVIGSDIDERMVRGAKINLEYYGIEDYPVLKVLDATNLPLRDNS 264 (347)
T ss_pred HHHHHHCCCCCCEEECCCCCCCHHHHH-HHHCC--CEEEECCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCC
T ss_conf 987774164698764576783488883-66427--567603237999855664156627676168873022127788774
Q ss_pred CCEEEECCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHCHHHHHHHHHHCCC
Q ss_conf 46789627544504444422366724967899999987899999999608983899977588824299989999985799
Q gi|254780634|r 300 FTTVLVDAPCSGTGTWRRRPDIKWRLSQKNLIERTEEQKKILEESAQFVRPEGYLVYITCSILPEENIQQINYFLSKNPH 379 (429)
Q Consensus 300 fd~vl~DaPCSg~G~~rr~Pe~~w~~~~~~~~~~~~lQ~~iL~~a~~~lk~gG~lvYsTCS~~~~Ene~vv~~fL~~~~~ 379 (429)
T Consensus 265 vdaIatDPPYGrst~~~-------------~~~l~~Ly~~~le~~~evLk~gG~~vf~~p~~~~~~~~---------~~~ 322 (347)
T COG1041 265 VDAIATDPPYGRSTKIK-------------GEGLDELYEEALESASEVLKPGGRIVFAAPRDPRHELE---------ELG 322 (347)
T ss_pred CCEEEECCCCCCCCCCC-------------CCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHH---------HCC
T ss_conf 23588469987100245-------------55289999999999998730484899961786055676---------439
Q ss_pred CEEEE
Q ss_conf 79941
Q gi|254780634|r 380 FSIDS 384 (429)
Q Consensus 380 ~~~~~ 384 (429)
T Consensus 323 f~v~~ 327 (347)
T COG1041 323 FKVLG 327 (347)
T ss_pred CEEEE
T ss_conf 65999