HHsearch alignment for GI: 254780634 and conserved domain: COG1889
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis].
Probab=96.25 E-value=0.064 Score=32.77 Aligned_cols=131 Identities=20% Similarity=0.267 Sum_probs=87.2
Q ss_pred CCCCCCCEEEECCCCCCHHHHHHHHHHCCCCEEHHHHCCHHHHHHHHHHHHHCCCCCCE-EEECCCCCC----CCCCCCC
Q ss_conf 36666625860134688279999998616881005524989999999998750288608-821554344----5723246
Q gi|254780634|r 227 TAITNSSQILDFCAGGGGKTLALSMLLNNKGQIHAWDNNKSRMAPIVARIKRAGIHNVQ-LHSSWESLR----NLQEHFT 301 (429)
Q Consensus 227 l~~~~g~~vLD~CAapGGKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~-~~~~~~~~~----~~~~~fd 301 (429)
T Consensus 72 ~pi~~g~~VLYLGAasGTTvSHVSDIv~-~G~iYaVEfs~R~~reLl~~a~~R--~Ni~PIL-~DA~~P~~Y~~~Ve~VD 147 (231)
T COG1889 72 FPIKEGSKVLYLGAASGTTVSHVSDIVG-EGRIYAVEFSPRPMRELLDVAEKR--PNIIPIL-EDARKPEKYRHLVEKVD 147 (231)
T ss_pred CCCCCCCEEEEEECCCCCCHHHHHHCCC-CCCEEEEEECCHHHHHHHHHHHHC--CCCEEEE-CCCCCCHHHHHHCCCCC
T ss_conf 7769998789950367985767776047-870899996444699999998747--8740020-13688377653124543
Q ss_pred EEEECCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-HHHHHHHCCCCEEEE--EECCCCHHHCHH-HHHHHHHH-
Q ss_conf 7896275445044444223667249678999999878999-999996089838999--775888242999-89999985-
Q gi|254780634|r 302 TVLVDAPCSGTGTWRRRPDIKWRLSQKNLIERTEEQKKIL-EESAQFVRPEGYLVY--ITCSILPEENIQ-QINYFLSK- 376 (429)
Q Consensus 302 ~vl~DaPCSg~G~~rr~Pe~~w~~~~~~~~~~~~lQ~~iL-~~a~~~lk~gG~lvY--sTCS~~~~Ene~-vv~~fL~~- 376 (429)
T Consensus 148 viy~DVA-----------------Qp--------~Qa~I~~~Na~~FLk~~G~~~i~iKArSIdvT~dp~~vf~~ev~kL 202 (231)
T COG1889 148 VIYQDVA-----------------QP--------NQAEILADNAEFFLKKGGYVVIAIKARSIDVTADPEEVFKDEVEKL 202 (231)
T ss_pred EEEEECC-----------------CC--------HHHHHHHHHHHHHCCCCCEEEEEEEEECCCCCCCHHHHHHHHHHHH
T ss_conf 8998368-----------------81--------0789999889973216973999998512304589899999999999
Q ss_pred -CCCCEEEECC
Q ss_conf -7997994143
Q gi|254780634|r 377 -NPHFSIDSII 386 (429)
Q Consensus 377 -~~~~~~~~~~ 386 (429)
T Consensus 203 ~~~~f~i~e~~ 213 (231)
T COG1889 203 EEGGFEILEVV 213 (231)
T ss_pred HHCCCEEEEEE
T ss_conf 85695046776