HHsearch alignment for GI: 254780634 and conserved domain: COG2226
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism].
Probab=98.89 E-value=7.5e-09 Score=79.91 Aligned_cols=122 Identities=22% Similarity=0.343 Sum_probs=94.3
Q ss_pred CCCCCCCCCCCEEEECCCCCCHHHHHHHHHHCCCCEEHHHHCCHHHHHHHHHHHHHCCCCCCEEEECCC-CCCCCCCCCC
Q ss_conf 211236666625860134688279999998616881005524989999999998750288608821554-3445723246
Q gi|254780634|r 223 VSNLTAITNSSQILDFCAGGGGKTLALSMLLNNKGQIHAWDNNKSRMAPIVARIKRAGIHNVQLHSSWE-SLRNLQEHFT 301 (429)
Q Consensus 223 ~~~~l~~~~g~~vLD~CAapGGKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~~~-~~~~~~~~fd 301 (429)
T Consensus 43 ~i~~~~~~~g~~vLDva~GTGd~a~~~~k~~g-~g~v~~~D~s~~ML~~a~~k~~~~~~~~i~fv~~dAe~LPf~D~sFD 121 (238)
T COG2226 43 LISLLGIKPGDKVLDVACGTGDMALLLAKSVG-TGEVVGLDISESMLEVAREKLKKKGVQNVEFVVGDAENLPFPDNSFD 121 (238)
T ss_pred HHHHHCCCCCCEEEEECCCCCHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHCCCCCCEEEEEECHHHCCCCCCCCC
T ss_conf 99860789998799966873199999999658-84499997999999999987432476632799705654988887658
Q ss_pred EEEECCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHCHHH
Q ss_conf 78962754450444442236672496789999998789999999960898389997758882429998
Q gi|254780634|r 302 TVLVDAPCSGTGTWRRRPDIKWRLSQKNLIERTEEQKKILEESAQFVRPEGYLVYITCSILPEENIQQ 369 (429)
Q Consensus 302 ~vl~DaPCSg~G~~rr~Pe~~w~~~~~~~~~~~~lQ~~iL~~a~~~lk~gG~lvYsTCS~~~~Ene~v 369 (429)
T Consensus 122 ~vt~~---fgl---rnv~d----------------~~~aL~E~~RVlKpgG--~~~vle~~~p~~~~~ 165 (238)
T COG2226 122 AVTIS---FGL---RNVTD----------------IDKALKEMYRVLKPGG--RLLVLEFSKPDNPVL 165 (238)
T ss_pred EEEEE---EHH---HCCCC----------------HHHHHHHHHHHHCCCE--EEEEEECCCCCCCHH
T ss_conf 89865---123---52787----------------8999999987626874--999987689986016