HHsearch alignment for GI: 254780634 and conserved domain: COG2265

>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis].
Probab=98.64  E-value=8.8e-08  Score=72.63  Aligned_cols=88  Identities=18%  Similarity=0.247  Sum_probs=74.1

Q ss_pred             CCCCCCCCCCCEEEECCCCCCHHHHHHHHHHCCCCEEHHHHCCHHHHHHHHHHHHHCCCCCCEEEECCCCC--CCC--CC
Q ss_conf             21123666662586013468827999999861688100552498999999999875028860882155434--457--23
Q gi|254780634|r  223 VSNLTAITNSSQILDFCAGGGGKTLALSMLLNNKGQIHAWDNNKSRMAPIVARIKRAGIHNVQLHSSWESL--RNL--QE  298 (429)
Q Consensus       223 ~~~~l~~~~g~~vLD~CAapGGKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~~~~~--~~~--~~  298 (429)
T Consensus       285 a~~~~~~~~~~~vlDlYCGvG~f~l~lA~---~~~~V~gvEi~~~aV~~A~~NA~~n~i~N~~f~~~~ae~~~~~~~~~~  361 (432)
T COG2265         285 ALEWLELAGGERVLDLYCGVGTFGLPLAK---RVKKVHGVEISPEAVEAAQENAAANGIDNVEFIAGDAEEFTPAWWEGY  361 (432)
T ss_pred             HHHHHHCCCCCEEEECCCCCCHHHHHHCC---CCCEEEEEECCHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHCCCC
T ss_conf             99997436997799935588701355312---465799996489999999999997398877999586888865100257


Q ss_pred             CCCEEEECCCCCCCH
Q ss_conf             246789627544504
Q gi|254780634|r  299 HFTTVLVDAPCSGTG  313 (429)
Q Consensus       299 ~fd~vl~DaPCSg~G  313 (429)
T Consensus       362 ~~d~VvvDPPR~G~~  376 (432)
T COG2265         362 KPDVVVVDPPRAGAD  376 (432)
T ss_pred             CCCEEEECCCCCCCC
T ss_conf             999899899999999