HHsearch alignment for GI: 254780634 and conserved domain: COG2265
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis].
Probab=98.64 E-value=8.8e-08 Score=72.63 Aligned_cols=88 Identities=18% Similarity=0.247 Sum_probs=74.1
Q ss_pred CCCCCCCCCCCEEEECCCCCCHHHHHHHHHHCCCCEEHHHHCCHHHHHHHHHHHHHCCCCCCEEEECCCCC--CCC--CC
Q ss_conf 21123666662586013468827999999861688100552498999999999875028860882155434--457--23
Q gi|254780634|r 223 VSNLTAITNSSQILDFCAGGGGKTLALSMLLNNKGQIHAWDNNKSRMAPIVARIKRAGIHNVQLHSSWESL--RNL--QE 298 (429)
Q Consensus 223 ~~~~l~~~~g~~vLD~CAapGGKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~~~~~--~~~--~~ 298 (429)
T Consensus 285 a~~~~~~~~~~~vlDlYCGvG~f~l~lA~---~~~~V~gvEi~~~aV~~A~~NA~~n~i~N~~f~~~~ae~~~~~~~~~~ 361 (432)
T COG2265 285 ALEWLELAGGERVLDLYCGVGTFGLPLAK---RVKKVHGVEISPEAVEAAQENAAANGIDNVEFIAGDAEEFTPAWWEGY 361 (432)
T ss_pred HHHHHHCCCCCEEEECCCCCCHHHHHHCC---CCCEEEEEECCHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHCCCC
T ss_conf 99997436997799935588701355312---465799996489999999999997398877999586888865100257
Q ss_pred CCCEEEECCCCCCCH
Q ss_conf 246789627544504
Q gi|254780634|r 299 HFTTVLVDAPCSGTG 313 (429)
Q Consensus 299 ~fd~vl~DaPCSg~G 313 (429)
T Consensus 362 ~~d~VvvDPPR~G~~ 376 (432)
T COG2265 362 KPDVVVVDPPRAGAD 376 (432)
T ss_pred CCCEEEECCCCCCCC
T ss_conf 999899899999999