HHsearch alignment for GI: 254780634 and conserved domain: COG2813
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis].
Probab=98.61 E-value=8.4e-07 Score=65.97 Aligned_cols=129 Identities=18% Similarity=0.265 Sum_probs=103.3
Q ss_pred CCCCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHCCCCEEHHHHCCHHHHHHHHHHHHHCCCCCCEEEECCCCCCCC
Q ss_conf 15565421123666662586013468827999999861688100552498999999999875028860882155434457
Q gi|254780634|r 217 DEGSQIVSNLTAITNSSQILDFCAGGGGKTLALSMLLNNKGQIHAWDNNKSRMAPIVARIKRAGIHNVQLHSSWESLRNL 296 (429)
Q Consensus 217 D~aSql~~~~l~~~~g~~vLD~CAapGGKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~~~~~~~~ 296 (429)
T Consensus 144 D~GS~lLl~~l~~~~~~~vlDlGCG~Gvlg~~la~~~p-~~~vtmvDvn~~Av~~ar~Nl~~N~~~~~~v~~s~~~-~~v 221 (300)
T COG2813 144 DKGSRLLLETLPPDLGGKVLDLGCGYGVLGLVLAKKSP-QAKLTLVDVNARAVESARKNLAANGVENTEVWASNLY-EPV 221 (300)
T ss_pred CHHHHHHHHHCCCCCCCCEEEECCCCCHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHCCCCCCEEEEECCC-CCC
T ss_conf 83889999737755699688707884299999998689-8728998266999999887699739876379981244-665
Q ss_pred CCCCCEEEECCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHH
Q ss_conf 23246789627544504444422366724967899999987899999999608983899977588824
Q gi|254780634|r 297 QEHFTTVLVDAPCSGTGTWRRRPDIKWRLSQKNLIERTEEQKKILEESAQFVRPEGYLVYITCSILPE 364 (429)
Q Consensus 297 ~~~fd~vl~DaPCSg~G~~rr~Pe~~w~~~~~~~~~~~~lQ~~iL~~a~~~lk~gG~lvYsTCS~~~~ 364 (429)
T Consensus 222 ~~kfd~IisNPPfh~G-----------------~~v~~~~~~~ii~~A~~~L~~gGeL~iVan~~l~y 272 (300)
T COG2813 222 EGKFDLIISNPPFHAG-----------------KAVVHSLAQEIIAAAARHLKPGGELWIVANRHLPY 272 (300)
T ss_pred CCCCCEEEECCCCCCC-----------------CCHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCH
T ss_conf 4400689848884677-----------------10167889999999997604597799997588896