HHsearch alignment for GI: 254780634 and conserved domain: PRK03522

>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed.
Probab=99.02  E-value=1.5e-08  Score=77.84  Aligned_cols=149  Identities=18%  Similarity=0.236  Sum_probs=106.4

Q ss_pred             CCCCCCCCCCCEEEECCCCCCHHHHHHHHHHCCCCEEHHHHCCHHHHHHHHHHHHHCCCCCCEEEECCCC--CCCCCCCC
Q ss_conf             2112366666258601346882799999986168810055249899999999987502886088215543--44572324
Q gi|254780634|r  223 VSNLTAITNSSQILDFCAGGGGKTLALSMLLNNKGQIHAWDNNKSRMAPIVARIKRAGIHNVQLHSSWES--LRNLQEHF  300 (429)
Q Consensus       223 ~~~~l~~~~g~~vLD~CAapGGKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~~~~--~~~~~~~f  300 (429)
T Consensus       225 ~~~~~~~~~~~~vlDlycG~G~~sl~lA~~---~~~V~gvE~~~~av~~A~~na~~ngi~nv~f~~~d~~~~~~~~~~~~  301 (375)
T PRK03522        225 ARDWVRELPPKSMWDLFCGVGGFGLHCATP---DMQLTGIEISAEAIACAKQSAAELGLTNVQFQALDSTQFATAQGEVP  301 (375)
T ss_pred             HHHHHHCCCCCEEEEECCCCCHHHHHHHHC---CCEEEEEEECHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHCCCCC
T ss_conf             999863158978999657853888987641---78899998459999999999998699876999737788876345689


Q ss_pred             CEEEECCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHCHHHHHHHHHHCCCC
Q ss_conf             67896275445044444223667249678999999878999999996089838999775888242999899999857997
Q gi|254780634|r  301 TTVLVDAPCSGTGTWRRRPDIKWRLSQKNLIERTEEQKKILEESAQFVRPEGYLVYITCSILPEENIQQINYFLSKNPHF  380 (429)
Q Consensus       301 d~vl~DaPCSg~G~~rr~Pe~~w~~~~~~~~~~~~lQ~~iL~~a~~~lk~gG~lvYsTCS~~~~Ene~vv~~fL~~~~~~  380 (429)
T Consensus       302 d~vvvDPPR~Gl~~-------------~~~~~l~~------------~~p-~~IvYVSCnP~Tla------RDl~~L~gy  349 (375)
T PRK03522        302 ELVLVNPPRRGIGK-------------PLCDYLSQ------------MAP-RFILYSSCNAQTMA------KDLAHLPGY  349 (375)
T ss_pred             CEEEECCCCCCCHH-------------HHHHHHHH------------CCC-CEEEEEECCHHHHH------HHHHHHCCC
T ss_conf             78998999777519-------------99999986------------599-96999907989999------998884397


Q ss_pred             EEEECCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCEEEEEEEEEC
Q ss_conf             994143002223455555555676984998044798621589999626
Q gi|254780634|r  381 SIDSIIDDWNQLYDLKNHPSLFIENGCCVLTPFLTNTDGFFFCRLKRH  428 (429)
Q Consensus       381 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~dGff~a~l~k~  428 (429)
T Consensus       350 ~l~~v~--------------------~~DmFPqT~HvE--~v~lL~Rk  375 (375)
T PRK03522        350 RIERVQ--------------------LFDMFPHTAHYE--VLTLLVRQ  375 (375)
T ss_pred             EEEEEE--------------------EECCCCCCCCEE--EEEEEEEC
T ss_conf             688999--------------------953698997189--99999959