HHsearch alignment for GI: 254780634 and conserved domain: PRK03522
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed.
Probab=99.02 E-value=1.5e-08 Score=77.84 Aligned_cols=149 Identities=18% Similarity=0.236 Sum_probs=106.4
Q ss_pred CCCCCCCCCCCEEEECCCCCCHHHHHHHHHHCCCCEEHHHHCCHHHHHHHHHHHHHCCCCCCEEEECCCC--CCCCCCCC
Q ss_conf 2112366666258601346882799999986168810055249899999999987502886088215543--44572324
Q gi|254780634|r 223 VSNLTAITNSSQILDFCAGGGGKTLALSMLLNNKGQIHAWDNNKSRMAPIVARIKRAGIHNVQLHSSWES--LRNLQEHF 300 (429)
Q Consensus 223 ~~~~l~~~~g~~vLD~CAapGGKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~~~~--~~~~~~~f 300 (429)
T Consensus 225 ~~~~~~~~~~~~vlDlycG~G~~sl~lA~~---~~~V~gvE~~~~av~~A~~na~~ngi~nv~f~~~d~~~~~~~~~~~~ 301 (375)
T PRK03522 225 ARDWVRELPPKSMWDLFCGVGGFGLHCATP---DMQLTGIEISAEAIACAKQSAAELGLTNVQFQALDSTQFATAQGEVP 301 (375)
T ss_pred HHHHHHCCCCCEEEEECCCCCHHHHHHHHC---CCEEEEEEECHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHCCCCC
T ss_conf 999863158978999657853888987641---78899998459999999999998699876999737788876345689
Q ss_pred CEEEECCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHCHHHHHHHHHHCCCC
Q ss_conf 67896275445044444223667249678999999878999999996089838999775888242999899999857997
Q gi|254780634|r 301 TTVLVDAPCSGTGTWRRRPDIKWRLSQKNLIERTEEQKKILEESAQFVRPEGYLVYITCSILPEENIQQINYFLSKNPHF 380 (429)
Q Consensus 301 d~vl~DaPCSg~G~~rr~Pe~~w~~~~~~~~~~~~lQ~~iL~~a~~~lk~gG~lvYsTCS~~~~Ene~vv~~fL~~~~~~ 380 (429)
T Consensus 302 d~vvvDPPR~Gl~~-------------~~~~~l~~------------~~p-~~IvYVSCnP~Tla------RDl~~L~gy 349 (375)
T PRK03522 302 ELVLVNPPRRGIGK-------------PLCDYLSQ------------MAP-RFILYSSCNAQTMA------KDLAHLPGY 349 (375)
T ss_pred CEEEECCCCCCCHH-------------HHHHHHHH------------CCC-CEEEEEECCHHHHH------HHHHHHCCC
T ss_conf 78998999777519-------------99999986------------599-96999907989999------998884397
Q ss_pred EEEECCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCEEEEEEEEEC
Q ss_conf 994143002223455555555676984998044798621589999626
Q gi|254780634|r 381 SIDSIIDDWNQLYDLKNHPSLFIENGCCVLTPFLTNTDGFFFCRLKRH 428 (429)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~dGff~a~l~k~ 428 (429)
T Consensus 350 ~l~~v~--------------------~~DmFPqT~HvE--~v~lL~Rk 375 (375)
T PRK03522 350 RIERVQ--------------------LFDMFPHTAHYE--VLTLLVRQ 375 (375)
T ss_pred EEEEEE--------------------EECCCCCCCCEE--EEEEEEEC
T ss_conf 688999--------------------953698997189--99999959