HHsearch alignment for GI: 254780634 and conserved domain: TIGR00438
>TIGR00438 rrmJ ribosomal RNA large subunit methyltransferase J; InterPro: IPR004512 The ribosomal RNA large subunit methyltransferase J 2.1.1 from EC methylates the 23S rRNA. It specifically methylates the uridine in position 2552 of 23s rRNA in the 50S particle using S-adenosyl-L-methionine as a substrate. It was previously known as cell division protein ftsJ.; GO: 0016436 rRNA (uridine) methyltransferase activity, 0006364 rRNA processing.
Probab=98.31 E-value=2.4e-06 Score=62.89 Aligned_cols=134 Identities=20% Similarity=0.277 Sum_probs=92.9
Q ss_pred CCCCCEEEECCCCCCHHHHHHHHHHCCCCEEHHHHCCHHHHHHHHHHHHHCCCCCCEEEECCCCCCC--------CC---
Q ss_conf 6666258601346882799999986168810055249899999999987502886088215543445--------72---
Q gi|254780634|r 229 ITNSSQILDFCAGGGGKTLALSMLLNNKGQIHAWDNNKSRMAPIVARIKRAGIHNVQLHSSWESLRN--------LQ--- 297 (429)
Q Consensus 229 ~~~g~~vLD~CAapGGKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~~~~~~~--------~~--- 297 (429)
T Consensus 30 ik~G~~VlDLGAAPGGWsQva~~~~G~kG~ViA~Dl~~~k---------~FP~~nv~fi~GDftdee~l~ki~~~~g~de 100 (192)
T TIGR00438 30 IKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK---------GFPIENVDFIRGDFTDEEVLNKILERVGDDE 100 (192)
T ss_pred EECCCEEEECCCCCCCHHHHHHHHHCCCCEEEEEECCCCC---------CCCCCCEEEEECCCCCHHHHHHHHHHCCCCC
T ss_conf 1078867865789873877887760685338998545578---------8564661475447678789999998578987
Q ss_pred CCCCEEEECCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHCHHHHHHHH-HH
Q ss_conf 32467896275445044444223667249678999999878999999996089838999775888242999899999-85
Q gi|254780634|r 298 EHFTTVLVDAPCSGTGTWRRRPDIKWRLSQKNLIERTEEQKKILEESAQFVRPEGYLVYITCSILPEENIQQINYFL-SK 376 (429)
Q Consensus 298 ~~fd~vl~DaPCSg~G~~rr~Pe~~w~~~~~~~~~~~~lQ~~iL~~a~~~lk~gG~lvYsTCS~~~~Ene~vv~~fL-~~ 376 (429)
T Consensus 101 kk~DVV~SDaaP~~SG~--------~~iDh~Rs~dLv~~aL~i---a~~vL~~~GnfvvKv---FqG--e~-~d~y~~e~ 163 (192)
T TIGR00438 101 KKVDVVMSDAAPNISGI--------WDIDHLRSIDLVELALDI---AKEVLKPKGNFVVKV---FQG--EE-IDEYLNEL 163 (192)
T ss_pred CEEEEEEECCCCCCCCC--------CCCCHHHHHHHHHHHHHH---HHHHHHCCCCEEEEE---EEC--CC-HHHHHHHH
T ss_conf 43778985268887898--------754344379999999999---999861589899998---537--42-88999976
Q ss_pred CCCCEEEECCCC
Q ss_conf 799799414300
Q gi|254780634|r 377 NPHFSIDSIIDD 388 (429)
Q Consensus 377 ~~~~~~~~~~~~ 388 (429)
T Consensus 164 r~~F~~~k~~kP 175 (192)
T TIGR00438 164 RKLFEKVKVTKP 175 (192)
T ss_pred HHCCCEEEEECC
T ss_conf 520547674478