HHsearch alignment for GI: 254780634 and conserved domain: TIGR01177
>TIGR01177 TIGR01177 conserved hypothetical protein TIGR01177; InterPro: IPR005885 This family of largely hypothetical proteins is found exclusively in the Archaea and contain a putative RNA methylase domain..
Probab=94.90 E-value=0.083 Score=32.02 Aligned_cols=134 Identities=19% Similarity=0.206 Sum_probs=100.9
Q ss_pred CCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHCCCCEEHHH-HCCHHHHHHHHHHHHHCCCCC--CEEEECCCCCCC
Q ss_conf 56542112366666258601346882799999986168810055-249899999999987502886--088215543445
Q gi|254780634|r 219 GSQIVSNLTAITNSSQILDFCAGGGGKTLALSMLLNNKGQIHAW-DNNKSRMAPIVARIKRAGIHN--VQLHSSWESLRN 295 (429)
Q Consensus 219 aSql~~~~l~~~~g~~vLD~CAapGGKt~~la~~~~~~g~i~A~-D~~~~Rl~~l~~~~~r~g~~~--v~~~~~~~~~~~ 295 (429)
T Consensus 191 ~~~~~~~~~~~~~g~~~~dp~~g~gg~~~~-~gl~g--~~~~g~gd~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~ 267 (358)
T TIGR01177 191 LARALVNLAGVKEGDRLLDPFCGTGGFLIE-AGLLG--AKPIGCGDLDWKLVEGARLNLEHYGIEDKVFSVKRGDAKDLP 267 (358)
T ss_pred HHHHHHHHHHCCCCCCEECCCCCCCCHHHH-HHHHC--CCCCCCCHHHHHHHCCCHHHHHHCCCCCCEEEEEECCCHHCC
T ss_conf 777776542024675100422266603323-33321--100024403567642521113330554315676403300111
Q ss_pred C---C--CCCCEEEECCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHCHH
Q ss_conf 7---2--32467896275445044444223667249678999999878999999996089838999775888242999
Q gi|254780634|r 296 L---Q--EHFTTVLVDAPCSGTGTWRRRPDIKWRLSQKNLIERTEEQKKILEESAQFVRPEGYLVYITCSILPEENIQ 368 (429)
Q Consensus 296 ~---~--~~fd~vl~DaPCSg~G~~rr~Pe~~w~~~~~~~~~~~~lQ~~iL~~a~~~lk~gG~lvYsTCS~~~~Ene~ 368 (429)
T Consensus 268 ~~~~~~~~~~~~~~~d~p~g~~~~-------------~~~~~~~~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 332 (358)
T TIGR01177 268 LRLPGLDESVDAIATDPPYGRSTT-------------AAGDGLEELYEKSLEELHEVLKGGGWLAVAVPTDLDLESLA 332 (358)
T ss_pred CCCCCCHHHHHHHHCCCCCCCCCC-------------CCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHH
T ss_conf 003531011222212565453111-------------22103688888888888886426871799740334646654