HHsearch alignment for GI: 254780634 and conserved domain: TIGR02085
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB; InterPro: IPR011825 This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA .; GO: 0016436 rRNA (uridine) methyltransferase activity, 0016070 RNA metabolic process.
Probab=94.83 E-value=0.026 Score=35.43 Aligned_cols=129 Identities=18% Similarity=0.252 Sum_probs=92.9
Q ss_pred CCCCCCCCEEEECCCCCCHHHHHHH----HHHCCCCEEHHHHCCHHHHHHHHHHHHHCCCCCCEEEECCCCC--CCCC-C
Q ss_conf 2366666258601346882799999----9861688100552498999999999875028860882155434--4572-3
Q gi|254780634|r 226 LTAITNSSQILDFCAGGGGKTLALS----MLLNNKGQIHAWDNNKSRMAPIVARIKRAGIHNVQLHSSWESL--RNLQ-E 298 (429)
Q Consensus 226 ~l~~~~g~~vLD~CAapGGKt~~la----~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~~~~~--~~~~-~ 298 (429)
T Consensus 232 WV~e~~~~~mWDLFCGVGGFgLHCAkalqekw~p~~~lTGIEI~~eAIa~A~~SA~~lGl~~~~F~aLDsa~f~~~~~e~ 311 (386)
T TIGR02085 232 WVRELPVKQMWDLFCGVGGFGLHCAKALQEKWGPDTQLTGIEIESEAIACAKQSAKILGLENLSFAALDSAKFATAQAES 311 (386)
T ss_pred HHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEEEEECHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHCCC
T ss_conf 99745711032010465412789989876415897044313437789999999998735332104544579999862368
Q ss_pred CCCEEEECCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHCHHHHHHHHHHCC
Q ss_conf 24678962754450444442236672496789999998789999999960898389997758882429998999998579
Q gi|254780634|r 299 HFTTVLVDAPCSGTGTWRRRPDIKWRLSQKNLIERTEEQKKILEESAQFVRPEGYLVYITCSILPEENIQQINYFLSKNP 378 (429)
Q Consensus 299 ~fd~vl~DaPCSg~G~~rr~Pe~~w~~~~~~~~~~~~lQ~~iL~~a~~~lk~gG~lvYsTCS~~~~Ene~vv~~fL~~~~ 378 (429)
T Consensus 312 ~PeLVlVNPPRRGiG~--------------e-----------L~~~L~~~aP~-fILYSSCNa------~TM~KDi~~L~ 359 (386)
T TIGR02085 312 VPELVLVNPPRRGIGK--------------E-----------LCDYLSQLAPK-FILYSSCNA------QTMAKDIAELS 359 (386)
T ss_pred CCCEEEECCCCCCCCH--------------H-----------HHHHHHHCCCC-EEEECCCCH------HHHHHHHHHCC
T ss_conf 8965776788888760--------------6-----------89999750886-266216772------25899997556
Q ss_pred CCEEEECC
Q ss_conf 97994143
Q gi|254780634|r 379 HFSIDSII 386 (429)
Q Consensus 379 ~~~~~~~~ 386 (429)
T Consensus 360 ~Y~~~rvQ 367 (386)
T TIGR02085 360 GYKIERVQ 367 (386)
T ss_pred CCCEEEEE
T ss_conf 88357765