Query gi|254780634|ref|YP_003065047.1| NOL1/NOP2/SUN family signature protein [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 429
No_of_seqs 162 out of 2516
Neff 8.1
Searched_HMMs 39220
Date Sun May 29 21:13:37 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780634.hhm -d /home/congqian_1/database/cdd/Cdd.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK10901 16S rRNA methyltransf 100.0 0 0 754.4 36.6 396 4-428 5-428 (428)
2 TIGR00563 rsmB ribosomal RNA s 100.0 0 0 752.6 24.1 413 10-429 4-487 (487)
3 COG0144 Sun tRNA and rRNA cyto 100.0 0 0 601.8 28.6 298 122-429 50-355 (355)
4 PRK11933 yebU rRNA (cytosine-C 100.0 0 0 593.2 26.2 298 124-429 2-308 (471)
5 pfam01189 Nol1_Nop2_Fmu NOL1/N 100.0 0 0 572.1 23.8 272 145-426 1-277 (277)
6 TIGR00446 nop2p NOL1/NOP2/sun 100.0 0 0 540.8 14.4 269 157-427 1-284 (284)
7 KOG1122 consensus 100.0 0 0 522.6 18.2 305 120-429 131-442 (460)
8 KOG2198 consensus 100.0 1.4E-45 0 330.5 15.6 255 139-393 39-332 (375)
9 KOG2360 consensus 100.0 2E-41 0 301.4 21.2 399 9-428 3-413 (413)
10 pfam05175 MTS Methyltransferas 99.4 9.8E-12 2.5E-16 99.5 10.4 132 217-366 17-148 (170)
11 PRK11873 arsM arsenite S-adeno 99.2 1.8E-10 4.7E-15 90.9 10.7 120 222-363 64-184 (258)
12 cd00620 Methyltransferase_Sun 99.2 1.3E-10 3.3E-15 91.9 9.3 108 3-113 1-121 (126)
13 PRK08317 hypothetical protein; 99.2 2.9E-10 7.5E-15 89.5 10.7 129 223-375 11-145 (241)
14 COG2242 CobL Precorrin-6B meth 99.2 9.8E-10 2.5E-14 85.9 12.5 133 223-386 26-160 (187)
15 PRK08287 cobalt-precorrin-6Y C 99.1 4.7E-09 1.2E-13 81.3 14.7 134 223-386 22-157 (186)
16 PRK07402 precorrin-6B methylas 99.1 4.2E-09 1.1E-13 81.6 14.1 133 223-385 32-168 (196)
17 PRK00216 ubiE ubiquinone/menaq 99.1 8E-10 2E-14 86.5 8.7 116 223-360 43-160 (239)
18 pfam08704 GCD14 tRNA methyltra 99.1 1.4E-09 3.5E-14 84.9 9.6 120 222-375 93-219 (309)
19 pfam01209 Ubie_methyltran ubiE 99.1 1.2E-09 3.1E-14 85.2 9.2 127 223-374 39-166 (233)
20 TIGR03533 L3_gln_methyl protei 99.0 1.2E-08 2.9E-13 78.6 13.2 159 227-422 117-281 (284)
21 TIGR02469 CbiT precorrin-6Y C5 99.0 3.2E-09 8.2E-14 82.4 9.9 108 224-356 12-131 (135)
22 PRK00377 cbiT cobalt-precorrin 99.0 6.4E-09 1.6E-13 80.4 11.3 136 222-385 31-170 (198)
23 PRK03522 rumB 23S rRNA methylu 99.0 1.5E-08 3.9E-13 77.8 13.2 149 223-428 225-375 (375)
24 pfam02475 Met_10 Met-10+ like- 99.0 3.6E-09 9.1E-14 82.1 8.9 101 229-356 98-199 (199)
25 pfam01135 PCMT Protein-L-isoas 99.0 5.8E-09 1.5E-13 80.7 9.8 109 223-359 65-174 (205)
26 COG1092 Predicted SAM-dependen 99.0 1.1E-08 2.9E-13 78.7 11.2 160 207-384 196-365 (393)
27 PRK11805 N5-glutamine S-adenos 98.9 2E-08 5E-13 77.0 11.4 129 228-359 130-264 (307)
28 COG2519 GCD14 tRNA(1-methylade 98.9 6.7E-09 1.7E-13 80.3 8.9 126 208-360 71-198 (256)
29 PRK13943 protein-L-isoaspartat 98.9 1.1E-08 2.8E-13 78.8 9.8 106 224-357 68-174 (317)
30 PRK13942 protein-L-isoaspartat 98.9 1.3E-08 3.4E-13 78.2 9.7 109 223-359 68-177 (214)
31 cd02440 AdoMet_MTases S-adenos 98.9 1.1E-08 2.9E-13 78.7 9.0 102 234-358 1-104 (107)
32 COG2226 UbiE Methylase involve 98.9 7.5E-09 1.9E-13 79.9 7.9 122 223-369 43-165 (238)
33 pfam10672 Methyltrans_SAM S-ad 98.9 8.7E-08 2.2E-12 72.7 12.7 156 207-384 102-263 (286)
34 PTZ00098 phosphoethanolamine N 98.8 5E-08 1.3E-12 74.3 10.5 128 224-376 45-176 (263)
35 cd00447 NusB_Sun RNA binding d 98.8 7.5E-08 1.9E-12 73.1 11.0 107 4-112 1-123 (129)
36 PRK13944 protein-L-isoaspartat 98.8 5.1E-08 1.3E-12 74.2 9.6 110 223-360 64-175 (205)
37 PRK13168 rumA 23S rRNA 5-methy 98.8 2E-07 5E-12 70.3 12.5 150 223-428 286-440 (440)
38 smart00828 PKS_MT Methyltransf 98.8 6.1E-08 1.5E-12 73.7 9.2 129 233-385 1-142 (224)
39 PRK05134 3-demethylubiquinone- 98.8 3.8E-08 9.6E-13 75.1 7.9 108 227-360 44-153 (233)
40 COG1041 Predicted DNA modifica 98.8 8.7E-08 2.2E-12 72.7 9.5 138 222-384 188-327 (347)
41 PRK09489 rsmC 16S ribosomal RN 98.7 1.4E-07 3.5E-12 71.3 10.0 140 198-366 171-311 (342)
42 PRK11188 rrmJ 23S rRNA methylt 98.7 1E-07 2.6E-12 72.2 9.1 130 229-383 49-188 (209)
43 pfam05958 tRNA_U5-meth_tr tRNA 98.7 3.5E-07 8.8E-12 68.6 11.8 147 223-428 190-353 (353)
44 PRK09328 N5-glutamine S-adenos 98.7 2.2E-07 5.7E-12 69.9 10.6 150 231-390 109-265 (277)
45 COG2890 HemK Methylase of poly 98.7 5.7E-07 1.5E-11 67.1 12.2 145 234-388 113-264 (280)
46 PRK11207 tellurite resistance 98.7 5.8E-07 1.5E-11 67.1 11.8 135 229-392 29-175 (198)
47 TIGR03534 RF_mod_HemK protein- 98.7 4.1E-07 1E-11 68.1 10.9 152 231-389 87-243 (251)
48 PRK00312 pcm protein-L-isoaspa 98.7 1.9E-07 4.9E-12 70.3 9.2 105 223-358 70-175 (213)
49 COG2518 Pcm Protein-L-isoaspar 98.7 2E-07 5E-12 70.3 9.1 106 223-359 64-170 (209)
50 PRK01544 bifunctional N5-gluta 98.7 4.6E-07 1.2E-11 67.8 10.7 138 229-384 342-482 (503)
51 pfam01170 UPF0020 Putative RNA 98.6 3.7E-07 9.5E-12 68.4 10.1 124 223-363 20-145 (171)
52 COG2265 TrmA SAM-dependent met 98.6 8.8E-08 2.2E-12 72.6 6.7 88 223-313 285-376 (432)
53 COG4123 Predicted O-methyltran 98.6 5.4E-07 1.4E-11 67.3 10.5 143 220-375 33-184 (248)
54 COG2813 RsmC 16S RNA G1207 met 98.6 8.4E-07 2.1E-11 66.0 11.0 129 217-364 144-272 (300)
55 pfam09445 Methyltransf_15 RNA 98.6 2.3E-07 5.8E-12 69.8 8.0 108 233-343 2-116 (165)
56 PRK05031 tRNA (uracil-5-)-meth 98.6 4.1E-07 1E-11 68.1 8.6 147 223-428 200-363 (363)
57 pfam02384 N6_Mtase N-6 DNA Met 98.5 6.5E-07 1.6E-11 66.8 8.3 168 211-380 26-208 (312)
58 PRK09329 N5-glutamine S-adenos 98.5 2.6E-06 6.7E-11 62.6 11.1 142 232-382 110-256 (285)
59 KOG1540 consensus 98.5 1.4E-06 3.6E-11 64.4 9.6 140 222-387 91-239 (296)
60 TIGR00479 rumA 23S rRNA (uraci 98.5 1.6E-07 4.1E-12 70.9 4.6 108 224-362 287-401 (434)
61 COG2520 Predicted methyltransf 98.5 1.8E-06 4.5E-11 63.8 9.9 139 211-377 159-311 (341)
62 PRK01683 trans-aconitate 2-met 98.4 2.4E-06 6E-11 62.9 9.4 105 226-358 26-130 (252)
63 pfam01029 NusB NusB family. Th 98.4 5.3E-06 1.3E-10 60.5 10.8 105 4-111 2-121 (126)
64 pfam01728 FtsJ FtsJ-like methy 98.4 8.4E-06 2.1E-10 59.2 11.6 128 230-383 20-157 (176)
65 PRK00517 prmA ribosomal protei 98.3 2.3E-05 5.9E-10 56.2 12.8 143 207-386 140-285 (298)
66 COG2264 PrmA Ribosomal protein 98.3 1.2E-05 3.1E-10 58.1 11.0 145 207-386 140-287 (300)
67 COG4122 Predicted O-methyltran 98.3 3.2E-06 8.2E-11 62.0 7.8 121 217-362 45-170 (219)
68 TIGR00438 rrmJ ribosomal RNA l 98.3 2.4E-06 6.1E-11 62.9 7.0 134 229-388 30-175 (192)
69 pfam01596 Methyltransf_3 O-met 98.3 3.2E-06 8.2E-11 62.0 7.5 139 220-383 33-190 (204)
70 COG0293 FtsJ 23S rRNA methylas 98.3 8.4E-06 2.1E-10 59.2 9.2 130 230-386 44-182 (205)
71 COG2227 UbiG 2-polyprenyl-3-me 98.3 3.2E-06 8.1E-11 62.1 6.8 107 230-362 58-165 (243)
72 pfam03848 TehB Tellurite resis 98.3 1.2E-05 3E-10 58.2 9.8 138 226-392 25-174 (192)
73 PRK10258 biotin biosynthesis p 98.2 2.2E-06 5.7E-11 63.1 5.8 116 215-360 26-142 (251)
74 PRK00202 nusB transcription an 98.2 2.5E-05 6.4E-10 55.9 11.0 109 2-112 3-126 (132)
75 pfam06325 PrmA Ribosomal prote 98.2 5E-05 1.3E-09 53.9 12.3 141 207-386 138-281 (294)
76 PRK10909 rsmD 16S rRNA m(2)G96 98.2 4.3E-06 1.1E-10 61.2 6.5 106 230-358 51-158 (198)
77 PRK11036 putative metallothion 98.2 1.5E-05 3.9E-10 57.4 9.1 116 230-374 43-161 (256)
78 pfam01269 Fibrillarin Fibrilla 98.2 0.00019 4.7E-09 50.0 14.3 132 227-385 69-210 (229)
79 pfam02353 CMAS Cyclopropane-fa 98.2 1.3E-05 3.4E-10 57.8 8.2 118 221-362 52-170 (273)
80 COG2230 Cfa Cyclopropane fatty 98.2 2.1E-05 5.3E-10 56.5 9.1 136 222-382 63-201 (283)
81 KOG2904 consensus 98.1 4.2E-05 1.1E-09 54.4 10.4 146 231-379 148-304 (328)
82 pfam08242 Methyltransf_12 Meth 98.1 1.1E-05 2.7E-10 58.5 6.5 96 236-354 1-98 (98)
83 TIGR00080 pimt protein-L-isoas 98.1 9.9E-06 2.5E-10 58.7 6.2 122 223-377 72-203 (228)
84 PRK07580 Mg-protoporphyrin IX 98.1 8.5E-06 2.2E-10 59.1 5.7 72 229-305 61-133 (230)
85 PRK04338 N(2),N(2)-dimethylgua 98.0 3.3E-05 8.5E-10 55.1 7.8 109 227-363 47-157 (376)
86 TIGR02752 MenG_heptapren 2-hep 98.0 4.1E-05 1.1E-09 54.5 8.1 128 223-372 37-165 (231)
87 TIGR01983 UbiG ubiquinone bios 98.0 1.2E-05 2.9E-10 58.2 5.1 120 225-375 78-207 (275)
88 TIGR01934 MenG_MenH_UbiE ubiqu 98.0 8.2E-06 2.1E-10 59.3 4.2 131 223-377 31-178 (242)
89 COG2263 Predicted RNA methylas 98.0 4.3E-05 1.1E-09 54.3 7.8 135 217-383 29-165 (198)
90 pfam03602 Cons_hypoth95 Conser 97.9 2.9E-05 7.4E-10 55.5 6.3 106 231-359 43-152 (181)
91 KOG2915 consensus 97.9 3.5E-05 9E-10 54.9 6.6 88 222-309 96-187 (314)
92 pfam05401 NodS Nodulation prot 97.9 0.00011 2.9E-09 51.5 9.0 114 220-357 32-145 (201)
93 COG0742 N6-adenine-specific me 97.9 4.1E-05 1E-09 54.5 6.7 111 226-358 36-154 (187)
94 PRK04266 fibrillarin; Provisio 97.9 0.00083 2.1E-08 45.6 13.2 131 227-385 68-208 (226)
95 PRK11783 rlmL 23S rRNA m(2)G24 97.9 3.7E-05 9.4E-10 54.8 6.2 159 209-386 511-693 (716)
96 pfam08241 Methyltransf_11 Meth 97.9 5.7E-05 1.5E-09 53.5 7.1 93 236-355 1-94 (95)
97 pfam02005 TRM N2,N2-dimethylgu 97.9 0.00017 4.2E-09 50.4 9.5 107 230-363 48-157 (375)
98 PTZ00146 fibrillarin; Provisio 97.8 0.00062 1.6E-08 46.5 11.5 131 227-385 131-272 (296)
99 PRK00121 trmB tRNA (guanine-N( 97.8 0.00028 7E-09 48.9 8.9 141 230-388 53-197 (229)
100 KOG1270 consensus 97.7 0.0004 1E-08 47.8 8.7 107 228-359 86-196 (282)
101 cd00619 Terminator_NusB Transc 97.7 0.0014 3.5E-08 44.1 11.2 108 2-111 1-123 (130)
102 TIGR00095 TIGR00095 putative m 97.6 0.00037 9.4E-09 48.0 8.1 115 226-356 50-175 (210)
103 TIGR02072 BioC biotin biosynth 97.6 0.00019 4.7E-09 50.0 5.8 135 215-375 15-161 (272)
104 pfam02390 Methyltransf_4 Putat 97.6 0.00083 2.1E-08 45.6 9.0 139 231-386 20-163 (199)
105 KOG1271 consensus 97.5 0.00039 1E-08 47.8 6.7 119 234-372 70-195 (227)
106 KOG2187 consensus 97.5 0.00032 8.2E-09 48.4 6.0 127 216-371 362-501 (534)
107 COG0220 Predicted S-adenosylme 97.5 0.00088 2.2E-08 45.4 8.1 134 233-383 50-187 (227)
108 PRK00107 gidB glucose-inhibite 97.4 0.0013 3.2E-08 44.3 8.4 129 226-383 64-192 (216)
109 TIGR02143 trmA_only tRNA (urac 97.4 0.00079 2E-08 45.8 7.3 123 223-378 195-336 (361)
110 KOG1099 consensus 97.4 0.00056 1.4E-08 46.8 6.3 115 232-375 42-177 (294)
111 KOG1253 consensus 97.4 0.00059 1.5E-08 46.6 6.1 110 225-361 103-218 (525)
112 TIGR00406 prmA ribosomal prote 97.3 0.0005 1.3E-08 47.1 5.6 146 207-387 172-325 (330)
113 pfam03291 Pox_MCEL mRNA cappin 97.3 0.0037 9.4E-08 41.2 9.6 121 229-359 61-188 (327)
114 PRK00050 mraW S-adenosyl-methy 97.3 0.00061 1.6E-08 46.5 5.5 87 223-310 15-105 (309)
115 KOG1663 consensus 97.3 0.0016 4E-08 43.8 7.4 119 215-358 57-183 (237)
116 COG0286 HsdM Type I restrictio 97.2 0.00093 2.4E-08 45.3 6.2 167 211-382 166-352 (489)
117 TIGR00006 TIGR00006 S-adenosyl 97.2 0.0009 2.3E-08 45.4 6.1 158 224-386 20-276 (323)
118 TIGR02021 BchM-ChlM magnesium 97.2 0.00075 1.9E-08 45.9 5.3 106 229-360 52-161 (224)
119 pfam01795 Methyltransf_5 MraW 97.2 0.00094 2.4E-08 45.3 5.6 88 223-311 12-105 (310)
120 pfam05219 DREV DREV methyltran 97.1 0.0026 6.7E-08 42.2 7.6 178 124-358 6-188 (265)
121 COG0275 Predicted S-adenosylme 97.1 0.00089 2.3E-08 45.4 4.8 151 223-379 15-262 (314)
122 PRK12335 tellurite resistance 97.1 0.00096 2.5E-08 45.2 5.0 135 229-393 121-267 (289)
123 KOG1098 consensus 97.1 0.00089 2.3E-08 45.4 4.8 19 42-60 21-39 (780)
124 PRK11705 cyclopropane fatty ac 97.0 0.0046 1.2E-07 40.6 7.9 126 222-376 158-283 (383)
125 COG2521 Predicted archaeal met 97.0 0.00052 1.3E-08 47.0 3.0 141 224-386 127-276 (287)
126 PRK05785 hypothetical protein; 97.0 0.0014 3.7E-08 44.0 4.8 77 228-321 48-124 (225)
127 pfam02527 GidB rRNA small subu 96.9 0.013 3.3E-07 37.5 9.6 127 231-386 48-174 (184)
128 COG4076 Predicted RNA methylas 96.8 0.0024 6E-08 42.5 5.0 99 233-355 34-132 (252)
129 COG0116 Predicted N6-adenine-s 96.8 0.027 6.8E-07 35.4 10.0 125 223-361 183-347 (381)
130 COG3897 Predicted methyltransf 96.7 0.0026 6.5E-08 42.3 4.7 71 231-306 79-149 (218)
131 TIGR01951 nusB transcription a 96.7 0.029 7.4E-07 35.1 9.9 108 2-110 1-134 (140)
132 PRK09880 L-idonate 5-dehydroge 96.6 0.016 4.1E-07 36.8 7.7 102 226-360 164-268 (343)
133 pfam04445 DUF548 Protein of un 96.5 0.0058 1.5E-07 39.9 5.2 86 220-308 62-160 (235)
134 PRK01544 bifunctional N5-gluta 96.5 0.054 1.4E-06 33.3 10.2 139 230-376 134-281 (503)
135 pfam07021 MetW Methionine bios 96.4 0.0049 1.2E-07 40.4 4.4 71 229-305 11-81 (193)
136 KOG2899 consensus 96.3 0.0091 2.3E-07 38.5 5.4 108 231-358 58-209 (288)
137 PRK11088 rrmA 23S rRNA methylt 96.3 0.016 4.1E-07 36.9 6.6 98 209-312 63-165 (272)
138 KOG2730 consensus 96.3 0.0017 4.5E-08 43.4 1.6 108 208-318 69-184 (263)
139 PRK04457 spermidine synthase; 96.3 0.071 1.8E-06 32.5 9.7 138 221-379 57-197 (262)
140 KOG1596 consensus 96.3 0.044 1.1E-06 33.9 8.5 122 227-375 152-281 (317)
141 TIGR00537 hemK_rel_arch methyl 96.3 0.021 5.3E-07 36.1 6.9 148 222-383 11-165 (183)
142 COG1889 NOP1 Fibrillarin-like 96.3 0.064 1.6E-06 32.8 9.4 131 227-386 72-213 (231)
143 COG4106 Tam Trans-aconitate me 96.2 0.021 5.5E-07 36.0 6.9 103 227-357 26-128 (257)
144 pfam12147 Hydrolase_5 Putative 96.2 0.12 3E-06 30.9 12.0 129 230-379 134-268 (311)
145 pfam08003 Methyltransf_9 Prote 96.2 0.12 3.1E-06 30.9 13.4 203 124-368 15-229 (315)
146 PRK06202 hypothetical protein; 96.1 0.018 4.7E-07 36.5 6.0 75 229-305 59-136 (233)
147 KOG2671 consensus 96.1 0.014 3.6E-07 37.3 5.3 158 220-384 197-376 (421)
148 TIGR03451 mycoS_dep_FDH mycoth 96.0 0.035 8.9E-07 34.6 7.1 100 227-359 172-277 (358)
149 TIGR00536 hemK_fam methyltrans 95.9 0.05 1.3E-06 33.5 7.6 142 228-370 122-275 (311)
150 PHA02056 putative methyltransf 95.9 0.013 3.3E-07 37.5 4.6 129 227-363 60-217 (279)
151 KOG3420 consensus 95.9 0.0093 2.4E-07 38.5 3.8 92 227-323 44-135 (185)
152 PRK06922 hypothetical protein; 95.9 0.075 1.9E-06 32.3 8.4 133 225-371 414-550 (679)
153 pfam04989 CmcI Cephalosporin h 95.9 0.064 1.6E-06 32.8 8.0 144 214-385 14-184 (202)
154 PRK10083 putative dehydrogenas 95.9 0.037 9.5E-07 34.4 6.7 104 224-360 153-261 (339)
155 pfam10354 DUF2431 Domain of un 95.8 0.18 4.5E-06 29.8 11.3 79 297-386 73-151 (166)
156 cd00315 Cyt_C5_DNA_methylase C 95.8 0.022 5.7E-07 35.9 5.2 80 233-318 1-81 (275)
157 COG0030 KsgA Dimethyladenosine 95.7 0.041 1.1E-06 34.1 6.4 129 221-361 20-151 (259)
158 pfam00145 DNA_methylase C-5 cy 95.7 0.02 5.1E-07 36.2 4.7 78 233-317 1-78 (319)
159 KOG1661 consensus 95.6 0.12 3.1E-06 30.9 8.6 108 224-359 73-194 (237)
160 TIGR03366 HpnZ_proposed putati 95.6 0.044 1.1E-06 33.9 6.3 101 226-359 115-219 (280)
161 COG1063 Tdh Threonine dehydrog 95.6 0.044 1.1E-06 33.9 6.3 106 227-363 164-274 (350)
162 PRK11760 putative RNA 2'-O-rib 95.6 0.018 4.6E-07 36.5 4.2 78 228-314 207-284 (356)
163 PRK10742 putative methyltransf 95.6 0.025 6.4E-07 35.5 4.8 85 220-307 75-172 (250)
164 COG0357 GidB Predicted S-adeno 95.6 0.035 8.9E-07 34.6 5.6 114 232-372 68-182 (215)
165 KOG1541 consensus 95.4 0.14 3.6E-06 30.4 8.3 140 212-376 29-174 (270)
166 pfam10294 Methyltransf_16 Puta 95.4 0.24 6.2E-06 28.8 10.2 122 230-380 43-171 (171)
167 COG1064 AdhP Zn-dependent alco 95.4 0.083 2.1E-06 32.0 7.0 140 227-377 162-302 (339)
168 PRK10309 galactitol-1-phosphat 95.2 0.06 1.5E-06 33.0 5.9 101 225-357 154-259 (347)
169 COG1867 TRM1 N2,N2-dimethylgua 95.2 0.024 6.1E-07 35.7 3.8 75 232-307 53-129 (380)
170 TIGR00138 gidB methyltransfera 95.2 0.1 2.5E-06 31.5 7.0 107 231-363 49-158 (197)
171 KOG4589 consensus 95.2 0.28 7.1E-06 28.4 13.6 136 230-387 68-211 (232)
172 TIGR01177 TIGR01177 conserved 94.9 0.083 2.1E-06 32.0 5.8 134 219-368 191-332 (358)
173 smart00650 rADc Ribosomal RNA 94.9 0.11 2.9E-06 31.1 6.5 85 223-312 5-90 (169)
174 TIGR02085 meth_trns_rumB 23S r 94.8 0.026 6.7E-07 35.4 3.1 129 226-386 232-367 (386)
175 KOG0024 consensus 94.5 0.18 4.6E-06 29.7 6.8 134 208-376 146-289 (354)
176 pfam01861 DUF43 Protein of unk 94.3 0.39 1E-05 27.4 8.1 88 254-342 65-168 (243)
177 PRK09422 alcohol dehydrogenase 94.1 0.15 3.9E-06 30.2 5.7 100 226-358 157-261 (338)
178 COG0421 SpeE Spermidine syntha 93.9 0.17 4.4E-06 29.8 5.6 123 222-365 68-197 (282)
179 PTZ00338 dimethyladenosine tra 93.8 0.2 5.2E-06 29.4 5.9 84 222-309 29-113 (296)
180 TIGR00477 tehB tellurite resis 93.8 0.081 2.1E-06 32.1 3.8 142 223-393 65-219 (239)
181 pfam00398 RrnaAD Ribosomal RNA 93.8 0.22 5.6E-06 29.1 5.9 129 222-362 21-152 (258)
182 TIGR03438 probable methyltrans 93.7 0.6 1.5E-05 26.2 9.3 123 230-374 62-190 (301)
183 PRK11524 putative methyltransf 93.5 0.14 3.5E-06 30.6 4.5 61 217-280 188-254 (284)
184 TIGR02081 metW methionine bios 93.4 0.18 4.7E-06 29.7 5.1 74 229-306 11-90 (205)
185 KOG1975 consensus 93.4 0.099 2.5E-06 31.5 3.6 129 229-377 115-250 (389)
186 TIGR03201 dearomat_had 6-hydro 93.3 0.39 1E-05 27.4 6.6 114 227-376 162-288 (349)
187 KOG2361 consensus 93.2 0.028 7.2E-07 35.2 0.7 133 207-358 50-183 (264)
188 TIGR01444 fkbM_fam methyltrans 93.2 0.23 5.9E-06 29.0 5.3 56 234-289 1-59 (142)
189 PRK00811 spermidine synthase; 93.1 0.75 1.9E-05 25.5 9.0 123 230-375 77-208 (283)
190 pfam04816 DUF633 Family of unk 92.9 0.79 2E-05 25.4 11.6 118 237-385 3-122 (204)
191 PRK03612 spermidine synthase; 92.9 0.36 9.3E-06 27.7 5.9 128 228-375 290-429 (516)
192 pfam01564 Spermine_synth Sperm 92.8 0.83 2.1E-05 25.2 9.6 126 230-376 74-205 (240)
193 PRK05396 tdh L-threonine 3-deh 92.4 0.4 1E-05 27.4 5.6 96 229-358 161-263 (341)
194 TIGR00308 TRM1 N2,N2-dimethylg 92.4 0.062 1.6E-06 32.9 1.5 80 228-307 91-178 (462)
195 PRK13699 putative methylase; P 92.2 0.28 7.3E-06 28.4 4.7 56 219-277 145-206 (227)
196 KOG4300 consensus 91.8 0.72 1.8E-05 25.6 6.4 123 226-376 71-197 (252)
197 KOG3191 consensus 91.2 0.84 2.1E-05 25.2 6.2 136 232-377 44-184 (209)
198 COG1352 CheR Methylase of chem 91.1 1.3 3.2E-05 24.0 7.5 106 232-357 97-240 (268)
199 COG0270 Dcm Site-specific DNA 91.1 0.36 9.1E-06 27.7 4.2 83 232-318 3-86 (328)
200 KOG2782 consensus 91.0 0.2 5.1E-06 29.4 2.9 90 223-313 35-132 (303)
201 KOG1709 consensus 91.0 0.84 2.1E-05 25.2 6.0 110 230-366 100-212 (271)
202 pfam06080 DUF938 Protein of un 90.7 1.4 3.5E-05 23.8 8.4 137 229-386 23-171 (201)
203 pfam00107 ADH_zinc_N Zinc-bind 90.3 1.3 3.2E-05 24.0 6.4 86 243-361 3-94 (131)
204 COG3963 Phospholipid N-methylt 90.2 1.4 3.6E-05 23.7 6.6 114 222-360 39-158 (194)
205 pfam11599 AviRa RRNA methyltra 89.7 0.37 9.4E-06 27.6 3.3 152 188-366 20-222 (249)
206 KOG3010 consensus 89.4 0.35 8.8E-06 27.8 3.0 122 229-376 30-155 (261)
207 COG4098 comFA Superfamily II D 88.8 0.64 1.6E-05 26.0 4.0 126 215-364 101-246 (441)
208 TIGR00073 hypB hydrogenase acc 88.5 0.73 1.9E-05 25.6 4.1 141 230-376 31-220 (225)
209 PRK10611 chemotaxis methyltran 88.5 0.86 2.2E-05 25.1 4.5 106 232-357 116-261 (287)
210 PRK00274 ksgA dimethyladenosin 88.1 1.4 3.6E-05 23.7 5.3 82 222-312 30-115 (267)
211 PRK00536 speE spermidine synth 87.7 2.2 5.6E-05 22.3 7.6 122 230-383 71-195 (262)
212 COG0781 NusB Transcription ter 87.5 2.3 5.8E-05 22.2 10.1 64 3-68 11-80 (151)
213 pfam01739 CheR CheR methyltran 87.5 2.3 5.8E-05 22.2 8.2 110 230-359 29-174 (194)
214 smart00829 PKS_ER Enoylreducta 87.3 2.3 6E-05 22.1 6.9 94 227-355 100-202 (288)
215 smart00138 MeTrc Methyltransfe 87.2 2.4 6.1E-05 22.1 8.8 107 231-357 99-241 (264)
216 pfam10237 N6-adenineMlase Prob 86.1 2.2 5.5E-05 22.4 5.4 55 295-375 81-135 (161)
217 KOG0820 consensus 85.6 2.8 7.2E-05 21.6 6.0 127 223-363 50-181 (315)
218 TIGR00091 TIGR00091 tRNA (guan 84.9 1.5 3.9E-05 23.4 4.1 146 232-392 20-179 (216)
219 COG2933 Predicted SAM-dependen 84.7 1.4 3.6E-05 23.6 3.9 70 229-307 209-278 (358)
220 PRK11519 tyrosine kinase; Prov 84.6 3.1 8E-05 21.3 5.7 118 212-329 496-674 (720)
221 pfam01555 N6_N4_Mtase DNA meth 82.7 1.4 3.7E-05 23.6 3.3 51 220-273 164-220 (221)
222 PRK10754 quinone oxidoreductas 82.4 3.8 9.8E-05 20.7 6.0 53 226-284 135-189 (327)
223 TIGR01425 SRP54_euk signal rec 82.3 2.6 6.6E-05 21.8 4.4 129 217-377 117-260 (453)
224 KOG1227 consensus 82.3 0.57 1.5E-05 26.3 1.1 82 231-314 194-277 (351)
225 PHA02518 ParA-like protein; Pr 82.0 4 0.0001 20.6 8.5 133 243-378 12-161 (211)
226 KOG1499 consensus 82.0 4 0.0001 20.6 8.3 112 229-364 58-173 (346)
227 pfam05891 Hydroxy-O-Methy Puta 81.2 4.2 0.00011 20.4 8.9 102 233-356 57-159 (217)
228 TIGR00755 ksgA dimethyladenosi 80.9 4 0.0001 20.6 5.0 121 221-361 19-160 (277)
229 COG4976 Predicted methyltransf 79.9 4.7 0.00012 20.1 8.8 129 228-386 122-264 (287)
230 COG1568 Predicted methyltransf 79.9 2.2 5.6E-05 22.3 3.4 55 257-311 176-233 (354)
231 PRK13771 putative alcohol dehy 79.6 4.7 0.00012 20.1 8.2 109 226-373 157-269 (332)
232 KOG2078 consensus 79.4 0.97 2.5E-05 24.7 1.4 60 229-291 247-308 (495)
233 PRK01581 speE spermidine synth 78.7 5 0.00013 19.9 8.7 114 230-363 138-262 (363)
234 pfam01234 NNMT_PNMT_TEMT NNMT/ 78.6 5.1 0.00013 19.9 9.0 178 229-427 54-261 (261)
235 PRK10463 hydrogenase nickel in 78.6 3.4 8.6E-05 21.1 4.0 141 229-375 100-285 (290)
236 KOG3115 consensus 77.7 5.4 0.00014 19.7 8.4 137 232-386 61-208 (249)
237 COG0500 SmtA SAM-dependent met 77.3 5.5 0.00014 19.6 9.7 108 235-366 52-163 (257)
238 PRK11630 hypothetical protein; 76.8 4.2 0.00011 20.4 4.1 42 116-160 61-102 (206)
239 pfam09243 Rsm22 Mitochondrial 76.6 5.8 0.00015 19.5 10.1 73 232-305 35-109 (275)
240 PRK05876 short chain dehydroge 76.5 5.8 0.00015 19.5 5.2 50 232-282 6-56 (275)
241 TIGR00740 TIGR00740 methyltran 76.4 5.8 0.00015 19.4 5.2 145 215-383 39-192 (247)
242 TIGR00675 dcm DNA-cytosine met 75.9 4.9 0.00013 20.0 4.2 78 235-312 1-88 (425)
243 COG1062 AdhC Zn-dependent alco 75.1 4.7 0.00012 20.1 4.0 106 223-360 177-287 (366)
244 pfam04378 DUF519 Protein of un 74.2 6.6 0.00017 19.1 4.8 109 241-376 65-178 (245)
245 PRK10634 putative ribosome mat 73.3 5.8 0.00015 19.5 4.0 42 117-159 55-97 (190)
246 TIGR01862 N2-ase-Ialpha nitrog 72.8 3.8 9.8E-05 20.7 3.0 81 299-383 376-459 (510)
247 cd03115 SRP The signal recogni 72.2 7.4 0.00019 18.8 8.0 113 243-376 11-138 (173)
248 pfam00448 SRP54 SRP54-type pro 71.3 7.4 0.00019 18.8 4.2 116 239-376 6-139 (196)
249 cd01126 TraG_VirD4 The TraG/Tr 71.3 7.7 0.0002 18.6 4.3 25 43-67 34-58 (384)
250 COG1189 Predicted rRNA methyla 71.0 7.8 0.0002 18.6 8.9 142 230-386 78-223 (245)
251 pfam07015 VirC1 VirC1 protein. 70.8 7.9 0.0002 18.6 4.5 144 234-378 2-170 (231)
252 TIGR00064 ftsY signal recognit 70.7 5.5 0.00014 19.6 3.5 65 242-306 92-172 (284)
253 pfam00891 Methyltransf_2 O-met 70.6 8 0.0002 18.5 7.7 110 228-368 98-207 (239)
254 PRK11361 acetoacetate metaboli 70.4 3.7 9.4E-05 20.8 2.5 14 362-375 361-374 (457)
255 KOG1500 consensus 68.1 9 0.00023 18.2 7.9 100 230-356 176-280 (517)
256 KOG3673 consensus 66.8 1.7 4.4E-05 23.1 0.2 19 356-374 438-456 (845)
257 PRK13849 putative crown gall t 65.1 10 0.00026 17.8 5.0 144 234-378 2-170 (231)
258 cd02042 ParA ParA and ParB of 64.5 4.1 0.0001 20.5 1.8 16 300-315 40-55 (104)
259 COG0745 OmpR Response regulato 64.2 5.7 0.00015 19.5 2.4 24 259-282 3-26 (229)
260 COG4798 Predicted methyltransf 63.9 11 0.00027 17.6 11.3 178 224-428 41-237 (238)
261 COG1192 Soj ATPases involved i 63.5 11 0.00028 17.6 3.9 23 297-320 117-139 (259)
262 TIGR01284 alt_nitrog_alph nitr 63.0 6.8 0.00017 19.0 2.7 21 209-229 384-404 (468)
263 PRK10610 chemotaxis regulatory 62.7 7.4 0.00019 18.7 2.8 64 253-316 1-70 (129)
264 COG4262 Predicted spermidine s 62.6 11 0.00029 17.5 5.0 128 229-376 287-426 (508)
265 TIGR03439 methyl_EasF probable 62.1 12 0.00029 17.4 9.9 109 230-356 75-195 (319)
266 pfam06962 rRNA_methylase Putat 61.8 8.6 0.00022 18.3 3.0 113 258-384 1-122 (140)
267 TIGR01283 nifE nitrogenase MoF 61.4 5.8 0.00015 19.5 2.1 53 208-269 384-436 (470)
268 PRK06731 flhF flagellar biosyn 61.3 12 0.00031 17.3 6.4 111 243-373 86-208 (270)
269 PRK10867 signal recognition pa 61.2 12 0.00029 17.4 3.6 27 349-376 213-239 (453)
270 TIGR02216 phage_TIGR02216 phag 61.1 3.8 9.7E-05 20.7 1.1 26 310-335 10-35 (62)
271 PRK13255 thiopurine S-methyltr 60.7 12 0.00031 17.3 7.9 115 227-365 33-162 (218)
272 PRK09841 cryptic autophosphory 60.6 12 0.00031 17.3 7.8 102 229-330 528-680 (726)
273 pfam03141 DUF248 Putative meth 60.0 5.8 0.00015 19.4 1.9 29 338-373 447-475 (506)
274 KOG1969 consensus 59.9 8.1 0.00021 18.5 2.6 46 299-344 458-507 (877)
275 PRK12723 flagellar biosynthesi 59.3 12 0.00031 17.3 3.4 66 243-308 185-263 (388)
276 KOG0022 consensus 59.1 13 0.00033 17.1 3.6 52 227-282 188-239 (375)
277 pfam05185 PRMT5 PRMT5 arginine 58.5 13 0.00034 17.0 6.4 101 234-355 189-294 (447)
278 TIGR02987 met_A_Alw26 type II 57.6 4.3 0.00011 20.4 0.9 172 213-390 7-234 (603)
279 PRK10923 glnG nitrogen regulat 56.3 8.6 0.00022 18.3 2.2 13 362-374 356-368 (469)
280 TIGR00677 fadh2_euk methylenet 56.0 15 0.00037 16.7 3.6 14 129-142 126-139 (312)
281 COG2961 ComJ Protein involved 55.9 15 0.00037 16.7 4.3 148 203-382 55-215 (279)
282 PRK11091 aerobic respiration c 54.6 9.4 0.00024 18.0 2.2 114 257-377 526-646 (779)
283 PRK06113 7-alpha-hydroxysteroi 54.5 15 0.00039 16.6 7.3 122 232-359 11-146 (255)
284 cd02038 FleN-like FleN is a me 54.4 11 0.00028 17.6 2.5 15 299-313 44-58 (139)
285 KOG0780 consensus 54.0 16 0.0004 16.5 7.1 115 242-377 111-240 (483)
286 COG0552 FtsY Signal recognitio 53.3 16 0.00041 16.5 3.4 121 242-377 149-284 (340)
287 TIGR00972 3a0107s01c2 phosphat 52.3 12 0.0003 17.4 2.4 45 299-364 162-206 (248)
288 COG5459 Predicted rRNA methyla 52.1 17 0.00043 16.3 6.4 19 300-319 361-379 (484)
289 KOG3987 consensus 51.8 12 0.00029 17.4 2.3 119 232-383 113-256 (288)
290 PRK10963 hypothetical protein; 51.8 7.8 0.0002 18.6 1.4 10 242-251 198-207 (223)
291 PRK10919 ATP-dependent DNA hel 51.4 17 0.00044 16.3 3.5 13 269-281 355-367 (672)
292 PRK07576 short chain dehydroge 51.0 17 0.00044 16.2 6.4 50 232-282 8-58 (260)
293 PRK06101 short chain dehydroge 49.7 18 0.00047 16.1 3.5 19 257-275 26-44 (241)
294 PRK09468 ompR osmolarity respo 49.4 11 0.00029 17.5 1.9 24 258-281 7-30 (239)
295 pfam04340 DUF484 Protein of un 48.9 9.8 0.00025 17.9 1.6 10 27-36 10-19 (219)
296 PTZ00336 elongation factor 1-a 48.8 19 0.00048 16.0 4.3 14 229-245 260-273 (449)
297 cd01976 Nitrogenase_MoFe_alpha 48.7 19 0.00048 16.0 3.0 24 357-383 352-375 (421)
298 COG4152 ABC-type uncharacteriz 48.1 19 0.00049 15.9 5.3 45 297-362 146-191 (300)
299 TIGR03499 FlhF flagellar biosy 47.5 20 0.0005 15.9 3.2 74 234-308 195-281 (282)
300 TIGR01447 recD exodeoxyribonuc 47.5 12 0.00029 17.4 1.7 67 238-306 281-356 (753)
301 COG1861 SpsF Spore coat polysa 47.5 20 0.0005 15.9 3.9 64 297-383 168-232 (241)
302 cd03067 PDI_b_PDIR_N PDIb fami 47.4 20 0.0005 15.8 3.9 36 334-371 33-68 (112)
303 pfam07091 FmrO Ribosomal RNA m 46.8 18 0.00046 16.1 2.6 72 231-305 102-174 (248)
304 TIGR00057 TIGR00057 Sua5/YciO/ 46.4 13 0.00032 17.2 1.8 18 139-157 79-96 (215)
305 PRK13435 response regulator; P 46.3 20 0.00052 15.7 3.1 109 257-379 2-120 (141)
306 PTZ00141 elongation factor 1 a 46.1 21 0.00053 15.7 4.4 14 230-246 259-272 (443)
307 PRK06949 short chain dehydroge 45.9 21 0.00053 15.7 6.8 49 232-282 9-59 (258)
308 pfam09140 MipZ ATPase MipZ. Mi 44.9 22 0.00055 15.6 5.4 38 351-388 174-214 (261)
309 TIGR02028 ChlP geranylgeranyl 44.5 21 0.00054 15.6 2.7 194 123-363 50-263 (401)
310 pfam01959 DHQS 3-dehydroquinat 44.1 9.8 0.00025 17.9 0.9 59 207-267 201-262 (343)
311 PTZ00065 60S ribosomal protein 44.0 11 0.00028 17.5 1.2 12 300-311 34-46 (130)
312 COG4555 NatA ABC-type Na+ tran 43.8 22 0.00057 15.5 4.7 64 297-382 149-212 (245)
313 PRK05786 fabG 3-ketoacyl-(acyl 43.6 23 0.00057 15.5 10.4 117 232-359 5-136 (238)
314 PRK06124 gluconate 5-dehydroge 43.5 23 0.00058 15.4 6.2 130 232-367 14-160 (259)
315 cd05565 PTS_IIB_lactose PTS_II 43.4 23 0.00058 15.4 3.3 53 233-306 1-54 (99)
316 PRK08643 acetoin reductase; Va 43.3 23 0.00058 15.4 5.1 34 249-282 18-52 (256)
317 PRK05632 phosphate acetyltrans 42.7 20 0.00051 15.8 2.4 27 348-374 531-557 (702)
318 TIGR00959 ffh signal recogniti 42.3 24 0.0006 15.3 3.9 178 130-376 46-246 (439)
319 TIGR02699 archaeo_AfpA archaeo 42.2 18 0.00046 16.1 2.0 10 240-249 135-144 (176)
320 PRK11773 uvrD DNA-dependent he 42.1 24 0.00061 15.3 3.6 13 167-179 361-373 (722)
321 PRK11727 putative SAM-dependen 41.8 24 0.00061 15.3 7.6 151 229-384 115-297 (326)
322 pfam05724 TPMT Thiopurine S-me 41.7 24 0.00061 15.3 11.9 136 226-386 17-174 (203)
323 PRK02290 3-dehydroquinate synt 40.6 15 0.00038 16.7 1.4 59 207-267 205-266 (347)
324 TIGR01768 GGGP-family geranylg 40.4 25 0.00064 15.1 5.8 120 261-383 36-163 (242)
325 TIGR01969 minD_arch cell divis 40.4 7 0.00018 18.9 -0.3 13 297-309 107-119 (258)
326 TIGR00452 TIGR00452 methyltran 40.1 25 0.00065 15.1 7.6 122 223-370 113-239 (316)
327 cd02036 MinD Bacterial cell di 40.0 15 0.00038 16.7 1.3 17 300-317 63-79 (179)
328 PRK12317 elongation factor 1-a 39.9 26 0.00065 15.1 5.0 16 229-247 253-268 (426)
329 KOG1197 consensus 39.8 26 0.00065 15.1 3.7 129 226-377 141-292 (336)
330 PRK13557 histidine kinase; Pro 39.5 20 0.00051 15.8 2.0 53 256-308 413-467 (538)
331 pfam11899 DUF3419 Protein of u 39.1 26 0.00067 15.0 3.6 65 280-365 270-338 (376)
332 PRK00771 signal recognition pa 39.0 26 0.00067 15.0 3.4 23 354-376 211-233 (433)
333 PRK10693 response regulator of 38.3 20 0.00052 15.8 1.8 15 267-281 243-257 (337)
334 PRK04333 50S ribosomal protein 38.1 11 0.00028 17.6 0.5 23 300-323 30-52 (83)
335 COG0677 WecC UDP-N-acetyl-D-ma 36.5 29 0.00073 14.7 7.3 43 240-286 204-246 (436)
336 PRK12569 hypothetical protein; 36.4 29 0.00074 14.7 2.8 16 328-343 85-100 (245)
337 PRK08277 D-mannonate oxidoredu 36.1 29 0.00074 14.7 6.7 49 232-281 10-59 (278)
338 pfam06859 Bin3 Bicoid-interact 35.8 29 0.00075 14.7 2.7 18 339-356 25-42 (110)
339 pfam08399 VWA_N VWA N-terminal 35.6 7.9 0.0002 18.6 -0.6 15 309-323 109-123 (123)
340 KOG1678 consensus 35.5 14 0.00035 16.9 0.6 27 298-327 128-154 (204)
341 TIGR00750 lao LAO/AO transport 35.4 14 0.00035 16.9 0.6 45 137-181 85-140 (333)
342 pfam09033 DFF-C DNA Fragmentat 34.6 21 0.00054 15.6 1.4 60 303-370 50-116 (164)
343 KOG3350 consensus 34.5 8.8 0.00022 18.2 -0.5 103 210-321 51-157 (217)
344 PRK11107 hybrid sensory histid 34.4 27 0.00069 14.9 1.9 52 258-312 538-589 (920)
345 pfam03746 LamB_YcsF LamB/YcsF 34.3 31 0.00079 14.5 2.9 58 325-383 77-141 (242)
346 cd03466 Nitrogenase_NifN_2 Nit 33.9 32 0.00081 14.5 2.7 42 143-184 142-188 (429)
347 COG2384 Predicted SAM-dependen 33.7 32 0.00081 14.4 5.1 122 230-383 15-139 (226)
348 PRK12809 putative oxidoreducta 33.4 32 0.00082 14.4 5.3 158 121-305 224-401 (639)
349 cd01981 Pchlide_reductase_B Pc 32.7 33 0.00084 14.3 3.6 69 164-244 179-247 (430)
350 pfam00072 Response_reg Respons 32.6 23 0.00059 15.4 1.4 48 260-307 2-50 (111)
351 PRK10701 DNA-binding transcrip 32.5 29 0.00073 14.8 1.8 13 403-415 226-238 (240)
352 COG3706 PleD Response regulato 32.5 31 0.00079 14.5 2.0 11 298-308 300-310 (435)
353 pfam03511 Fanconi_A Fanconi an 32.5 33 0.00085 14.3 3.1 38 240-279 13-50 (64)
354 KOG3421 consensus 31.9 12 0.00032 17.2 -0.1 12 301-312 34-45 (136)
355 cd00740 MeTr MeTr subgroup of 31.9 34 0.00087 14.2 4.4 18 228-245 35-52 (252)
356 pfam06564 YhjQ YhjQ protein. T 31.5 26 0.00067 15.0 1.5 20 298-318 116-135 (244)
357 TIGR03172 probable selenium-de 31.4 28 0.00071 14.8 1.6 40 340-379 174-220 (232)
358 PRK13837 two-component VirA-li 31.3 35 0.00089 14.2 2.5 31 331-361 562-592 (831)
359 cd01974 Nitrogenase_MoFe_beta 31.3 35 0.00089 14.2 2.6 27 351-377 326-352 (435)
360 TIGR02868 CydC ABC transporter 30.6 36 0.00091 14.1 3.0 58 213-270 360-429 (566)
361 PRK10841 hybrid sensory kinase 30.5 36 0.00091 14.1 2.2 15 269-283 719-733 (947)
362 COG2189 Adenine specific DNA m 30.4 30 0.00076 14.6 1.6 26 228-254 450-475 (590)
363 pfam02702 KdpD Osmosensitive K 30.2 36 0.00092 14.1 7.5 136 232-388 4-166 (211)
364 KOG3124 consensus 30.1 36 0.00093 14.1 2.1 40 234-273 222-265 (267)
365 PRK13591 ubiA prenyltransferas 29.8 37 0.00094 14.0 2.1 15 361-375 269-283 (304)
366 TIGR01627 A_thal_3515 uncharac 29.6 29 0.00074 14.7 1.5 10 299-308 147-156 (238)
367 pfam05971 Methyltransf_10 Prot 29.6 37 0.00094 14.0 11.4 145 230-384 64-237 (254)
368 PRK11145 pflA pyruvate formate 29.5 37 0.00095 14.0 6.1 105 264-384 83-198 (246)
369 TIGR01974 NDH_I_L proton-trans 29.5 8.9 0.00023 18.2 -1.2 41 21-62 238-285 (691)
370 PRK11517 transcriptional regul 29.4 36 0.00091 14.1 1.9 11 163-173 80-90 (223)
371 TIGR02767 TraG-Ti Ti-type conj 29.3 22 0.00057 15.5 0.8 102 238-344 225-340 (641)
372 smart00448 REC cheY-homologous 29.0 33 0.00084 14.4 1.6 52 258-309 2-54 (55)
373 KOG1645 consensus 28.8 28 0.00072 14.8 1.3 15 413-427 364-378 (463)
374 PRK08862 short chain dehydroge 28.7 38 0.00098 13.9 6.1 53 232-286 5-59 (227)
375 PRK04554 consensus 28.6 38 0.00098 13.9 2.0 56 264-320 172-236 (327)
376 cd03114 ArgK-like The function 28.6 26 0.00066 15.1 1.0 30 239-268 5-41 (148)
377 PRK09836 DNA-binding transcrip 28.5 38 0.00097 13.9 1.9 10 164-173 82-91 (226)
378 pfam02254 TrkA_N TrkA-N domain 28.4 39 0.00099 13.9 2.6 63 241-307 5-69 (115)
379 TIGR00421 ubiX_pad polyprenyl 28.0 39 0.001 13.8 2.6 10 300-310 76-85 (181)
380 COG2204 AtoC Response regulato 27.8 39 0.001 13.8 1.9 16 362-377 359-374 (464)
381 TIGR01968 minD_bact septum sit 27.6 29 0.00073 14.8 1.1 45 213-257 193-250 (272)
382 cd04166 CysN_ATPS CysN_ATPS su 27.5 40 0.001 13.7 4.0 56 261-336 142-204 (208)
383 pfam06725 3D 3D domain. This s 27.4 40 0.001 13.7 2.9 44 209-261 29-72 (74)
384 pfam08123 DOT1 Histone methyla 27.3 40 0.001 13.7 6.5 81 225-306 36-129 (205)
385 TIGR02250 FCP1_euk FCP1-like p 27.0 22 0.00057 15.5 0.5 46 220-265 98-150 (170)
386 PRK06853 indolepyruvate oxidor 26.7 41 0.0011 13.7 4.1 42 345-386 84-135 (197)
387 PRK05506 bifunctional sulfate 26.7 42 0.0011 13.7 4.6 30 340-369 504-533 (613)
388 PRK07890 short chain dehydroge 26.6 42 0.0011 13.6 10.5 26 257-282 30-55 (258)
389 PRK06198 short chain dehydroge 26.1 42 0.0011 13.6 6.1 22 259-280 34-55 (268)
390 PRK07535 methyltetrahydrofolat 26.1 43 0.0011 13.6 3.9 17 229-245 35-51 (268)
391 TIGR00274 TIGR00274 glucokinas 26.0 43 0.0011 13.6 2.1 45 11-63 19-63 (291)
392 KOG3349 consensus 25.9 42 0.0011 13.6 1.8 31 327-363 108-138 (170)
393 KOG0023 consensus 25.9 43 0.0011 13.6 5.1 129 228-387 178-333 (360)
394 cd01966 Nitrogenase_NifN_1 Nit 25.7 43 0.0011 13.5 4.8 21 164-184 171-191 (417)
395 KOG4174 consensus 25.4 44 0.0011 13.5 9.0 102 274-384 109-214 (282)
396 TIGR00417 speE spermidine synt 25.2 44 0.0011 13.5 2.2 120 222-362 64-200 (284)
397 pfam11523 DUF3223 Protein of u 25.1 44 0.0011 13.5 4.1 49 361-424 14-62 (76)
398 PRK09959 hybrid sensory histid 25.1 44 0.0011 13.5 1.9 50 258-307 960-1010(1197)
399 PRK05421 hypothetical protein; 25.0 45 0.0011 13.4 3.2 51 254-305 170-224 (254)
400 pfam02006 DUF137 Protein of un 24.9 45 0.0011 13.4 5.6 37 139-179 20-59 (178)
401 PRK05038 consensus 24.8 32 0.00081 14.4 0.9 22 299-320 213-234 (315)
402 COG3911 Predicted ATPase [Gene 24.7 45 0.0011 13.4 3.0 28 235-264 13-40 (183)
403 PRK12769 putative oxidoreducta 24.7 45 0.0011 13.4 5.4 158 121-305 241-418 (654)
404 PRK05867 short chain dehydroge 24.7 45 0.0011 13.4 6.3 50 231-282 8-59 (253)
405 pfam02977 CarbpepA_inh Carboxy 24.3 27 0.00068 15.0 0.5 20 344-363 21-40 (40)
406 PRK05703 flhF flagellar biosyn 24.2 46 0.0012 13.4 3.3 125 233-379 210-348 (412)
407 COG1117 PstB ABC-type phosphat 24.0 40 0.001 13.8 1.3 45 298-363 166-210 (253)
408 PRK05866 short chain dehydroge 24.0 46 0.0012 13.3 5.6 52 231-283 39-91 (290)
409 PRK06139 short chain dehydroge 24.0 46 0.0012 13.3 10.6 26 40-65 64-89 (324)
410 pfam05148 Methyltransf_8 Hypot 23.9 47 0.0012 13.3 2.6 108 232-384 68-177 (214)
411 KOG3222 consensus 23.9 27 0.00069 14.9 0.4 44 231-278 144-189 (195)
412 TIGR02207 lipid_A_htrB lipid A 23.9 24 0.00061 15.3 0.2 14 214-227 215-228 (308)
413 TIGR02740 TraF-like TraF-like 23.8 47 0.0012 13.3 3.3 59 330-392 177-238 (306)
414 KOG3178 consensus 23.6 47 0.0012 13.3 2.5 108 226-362 168-279 (342)
415 TIGR01326 OAH_OAS_sulfhy O-ace 23.4 42 0.0011 13.6 1.4 38 330-387 293-330 (434)
416 cd01983 Fer4_NifH The Fer4_Nif 23.4 48 0.0012 13.3 2.2 14 301-314 35-48 (99)
417 KOG2305 consensus 23.4 43 0.0011 13.5 1.4 14 140-153 167-180 (313)
418 KOG2651 consensus 23.2 43 0.0011 13.5 1.4 43 222-266 144-186 (476)
419 cd01883 EF1_alpha Eukaryotic e 23.1 48 0.0012 13.2 4.9 75 242-334 121-213 (219)
420 PRK09634 nusB transcription an 23.1 48 0.0012 13.2 5.7 22 43-64 114-135 (206)
421 TIGR02402 trehalose_TreZ malto 23.0 49 0.0012 13.2 3.5 14 300-313 154-167 (564)
422 PRK08945 short chain dehydroge 22.9 49 0.0012 13.2 11.5 125 231-359 12-153 (245)
423 cd01977 Nitrogenase_VFe_alpha 22.8 49 0.0012 13.2 4.7 18 164-181 175-192 (415)
424 COG2103 Predicted sugar phosph 22.6 49 0.0013 13.1 4.0 12 300-311 218-229 (298)
425 COG1759 5-formaminoimidazole-4 22.6 41 0.0011 13.7 1.2 22 330-351 268-289 (361)
426 pfam00799 Gemini_AL1 Geminivir 22.3 42 0.0011 13.6 1.2 24 351-374 7-30 (114)
427 PTZ00088 adenylate kinase 1; P 22.3 50 0.0013 13.1 3.6 14 330-343 181-194 (225)
428 cd02035 ArsA ArsA ATPase funct 21.9 50 0.0013 13.1 1.5 15 298-312 112-126 (217)
429 PRK13761 hypothetical protein; 21.8 51 0.0013 13.0 5.3 36 139-178 83-121 (248)
430 PRK06995 flhF flagellar biosyn 21.7 51 0.0013 13.0 1.9 120 239-378 181-313 (404)
431 pfam04189 Gcd10p Gcd10p family 21.7 51 0.0013 13.0 2.8 35 226-262 197-233 (300)
432 pfam07327 Neuroparsin Neuropar 21.6 51 0.0013 13.0 2.1 11 1-11 1-11 (103)
433 COG0009 SUA5 Putative translat 21.5 52 0.0013 13.0 2.7 22 138-160 80-101 (211)
434 cd03470 Rieske_cytochrome_bc1 21.5 29 0.00073 14.7 0.2 47 314-360 18-70 (126)
435 pfam03091 CutA1 CutA1 divalent 21.4 52 0.0013 13.0 2.9 23 353-376 2-24 (102)
436 pfam06626 DUF1152 Protein of u 21.2 52 0.0013 13.0 3.5 47 337-386 174-221 (297)
437 TIGR00497 hsdM type I restrict 21.1 48 0.0012 13.2 1.3 165 212-378 203-391 (516)
438 PRK08072 nicotinate-nucleotide 21.1 53 0.0013 12.9 2.9 58 293-383 202-259 (277)
439 TIGR03029 EpsG chain length de 21.0 40 0.001 13.8 0.8 24 297-320 210-237 (274)
440 pfam06801 consensus 20.8 34 0.00086 14.3 0.4 10 354-363 87-96 (96)
441 pfam04669 DUF579 Protein of un 20.7 54 0.0014 12.9 3.4 12 297-308 110-121 (187)
442 PRK04841 transcriptional regul 20.7 54 0.0014 12.9 2.4 28 339-371 752-779 (903)
443 pfam06306 CgtA Beta-1,4-N-acet 20.5 54 0.0014 12.9 3.0 12 301-312 228-239 (347)
444 TIGR03587 Pse_Me-ase pseudamin 20.3 55 0.0014 12.8 5.5 135 230-391 42-187 (204)
445 PRK10458 DNA cytosine methylas 20.2 55 0.0014 12.8 5.7 16 314-329 318-333 (470)
446 COG3914 Spy Predicted O-linked 20.1 55 0.0014 12.8 1.5 23 330-352 443-468 (620)
447 PRK06096 molybdenum transport 20.1 55 0.0014 12.8 4.1 70 285-384 195-264 (284)
448 PRK00258 aroE shikimate 5-dehy 20.0 55 0.0014 12.8 5.6 83 229-319 119-201 (275)
No 1
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=100.00 E-value=0 Score=754.40 Aligned_cols=396 Identities=26% Similarity=0.389 Sum_probs=334.1
Q ss_pred HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC-------HH-----
Q ss_conf 689999999999999569978999999998685889557999999999999758999997056896-------79-----
Q gi|254780634|r 4 GGQIAAAIEILKDIRTHKKPITNSLKDWGMSHRFAGSSDRASISNIVHDVLRKYLSSAYIMDSDDP-------ES----- 71 (429)
Q Consensus 4 ~aR~~AA~eiL~~v~~~~~~ad~~L~~~~~~~r~lgs~DR~~i~~lvyg~lR~~~~ld~il~~~~~-------r~----- 71 (429)
-+|. .|+++|.+|+.+|++++.+|....+ .++++||+|+++||||++|++++|||++++... +.
T Consensus 5 n~R~-~A~~~L~~v~~~g~~~~~~L~~~~~---~l~~~Dr~l~~elvyG~lR~~~~LD~il~~~~~~p~~~~~~~v~~lL 80 (428)
T PRK10901 5 NLRS-IAAQAVEQVVEQGQSLSNVLPPLQQ---KVSDKDKALLQELCFGVLRTLSQLEWLINKLMARPMTGKQRTVHYLI 80 (428)
T ss_pred CHHH-HHHHHHHHHHHCCCCHHHHHHHHHC---CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHH
T ss_conf 4999-9999999999869929999999870---59998899999999999976899999999983799854347999999
Q ss_pred --HHHHHHHHHCCCCHHHHHHHHHHHHHCCCCC-HHHHHHHHHC---CCCC-----CCCCHHHHCCCHHHHHHHHHHCCH
Q ss_conf --9999999743889899999885433034332-0467754420---3433-----679123508998899999985744
Q gi|254780634|r 72 --LVYAVIMKDWDIPWEKMLSMLKEDLFSPPLP-KESVIKSFHS---RQLE-----NAPLHIQGNIPQWLQSSFQSYFKD 140 (429)
Q Consensus 72 --~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~~-~~~~~~~~~~---~~~~-----~~~~~i~~s~P~WL~~~~~~~~ge 140 (429)
.+|++ +.+++|.+++++.+++........ ...+++++.. +..+ ....+++||||+||+++|.+.||+
T Consensus 81 rlg~yQl--l~~~iP~~AaVne~Ve~ak~~~~~~~~glVNAVLR~~~r~~~~~~~~~~~~~~~~s~P~Wlv~~~~~~~~~ 158 (428)
T PRK10901 81 MVGLYQL--LYTRIPPHAALAETVEGAVAIKRPQLKGLINGVLRQFQRQQEELLAEFNTSDARYLHPSWLLKRLQKAYPE 158 (428)
T ss_pred HHHHHHH--HHCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHCCCCCCCCHHHHCCHHHHHHHHHHHHH
T ss_conf 9999999--61799951479899999986166304678899999986043211033246212430987899999997589
Q ss_pred HHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCC--CCCCCCCCCCCCCCCCCCCHHCCHHHCCCEEEEECC
Q ss_conf 899999986289861112477889989999989871887545--475431134566544461011096312654898415
Q gi|254780634|r 141 TWLKEAKSLSMRAPLDLRTNTLKVNRCKLFKNLCHYGVHHSS--ISRFGLRIPATKGKSRLPNVMNDITFQRGWFEIQDE 218 (429)
Q Consensus 141 ~~~~~l~a~~~~~pl~iRvN~~k~~~~~~~~~L~~~gi~~~~--~~~~~~~l~~~~~~~~~~~~~~~~~f~~G~~~VQD~ 218 (429)
+++++++++|++||++||||+.|++++++.+.|.+.|++.++ ..|.++++.... .+..++.|++|+|+|||+
T Consensus 159 ~~~~ll~a~n~~pp~~lRvN~~k~~~~~~~~~L~~~gi~~~~~~~~~~~l~l~~~~------~i~~l~~f~~G~~~VQD~ 232 (428)
T PRK10901 159 QWQSIVEANNQRPPMWLRVNRTHHSRDEWLALLEEAGMKGFPHPDYPDAVRLETPA------PVHALPGFEEGWVTVQDA 232 (428)
T ss_pred HHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCEEEECCCC------CHHHCCCCCCCEEEEECH
T ss_conf 99999996089998378835776999999999985899735268899769987999------811081001681898172
Q ss_pred CCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHCCCCEEHHHHCCHHHHHHHHHHHHHCCCCCCEEEECCCCCCC---
Q ss_conf 56542112366666258601346882799999986168810055249899999999987502886088215543445---
Q gi|254780634|r 219 GSQIVSNLTAITNSSQILDFCAGGGGKTLALSMLLNNKGQIHAWDNNKSRMAPIVARIKRAGIHNVQLHSSWESLRN--- 295 (429)
Q Consensus 219 aSql~~~~l~~~~g~~vLD~CAapGGKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~~~~~~~--- 295 (429)
|||+++.+|+|++|++|||+||||||||+||++++ ++|.|+|+|++++|++.+++|++|+|+. +.+...|...+.
T Consensus 233 aSql~~~ll~p~~g~~VLD~CAaPGGKt~~la~~~-~~~~v~A~D~~~~Rl~~l~~n~~Rlg~~-~~v~~~d~~~~~~~~ 310 (428)
T PRK10901 233 SAQGCVTLLAPQNGEHILDLCAAPGGKTTHILEVA-PEAQVLAVDIDEQRLSRVYDNLKRLGMK-ATVKQGDGRYPSQWC 310 (428)
T ss_pred HHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHC-CCCCEEEEECCHHHHHHHHHHHHHCCCC-EEEEECCCCCHHHHC
T ss_conf 76789986498889879871688766899999964-5892899969888999999999975997-399977655723313
Q ss_pred CCCCCCEEEECCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHCHHHHHHHHH
Q ss_conf 72324678962754450444442236672496789999998789999999960898389997758882429998999998
Q gi|254780634|r 296 LQEHFTTVLVDAPCSGTGTWRRRPDIKWRLSQKNLIERTEEQKKILEESAQFVRPEGYLVYITCSILPEENIQQINYFLS 375 (429)
Q Consensus 296 ~~~~fd~vl~DaPCSg~G~~rr~Pe~~w~~~~~~~~~~~~lQ~~iL~~a~~~lk~gG~lvYsTCS~~~~Ene~vv~~fL~ 375 (429)
...+||+|||||||||+||||||||+||+++++++.+++.+|.+||++|+++|||||+|||||||++|+|||+||++||+
T Consensus 311 ~~~~fD~ILlDaPCSg~G~lrR~Pdikw~~~~~di~~l~~lQ~~iL~~a~~~lk~gG~LvYsTCSi~~eENe~~I~~FL~ 390 (428)
T PRK10901 311 GEQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIAELAQLQSEILDAIWPHLKSGGTLVYATCSVLPEENSQQIKAFLQ 390 (428)
T ss_pred CCCCCCEEEECCCCCCCEEECCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHHH
T ss_conf 44567879975898887244468542112899999999999999999999866889889999899995778999999998
Q ss_pred HCCCCEEEECCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCEEEEEEEEEC
Q ss_conf 57997994143002223455555555676984998044798621589999626
Q gi|254780634|r 376 KNPHFSIDSIIDDWNQLYDLKNHPSLFIENGCCVLTPFLTNTDGFFFCRLKRH 428 (429)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~dGff~a~l~k~ 428 (429)
+||||++++... ...++++++||.|++||||+|+|+||
T Consensus 391 ~~~d~~l~~~~~---------------~~~~~~~~~P~~~~~DGFf~a~L~kk 428 (428)
T PRK10901 391 RTPDAELCETGT---------------PEQPGKQNLPGAEEGDGFFYAKLIKK 428 (428)
T ss_pred HCCCCEECCCCC---------------CCCCCEEECCCCCCCCCEEEEEEEEC
T ss_conf 599978606778---------------89998788999999873799999849
No 2
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase B; InterPro: IPR004573 This family consists of bacterial sequences related to Escherichia coli rsmB, an rRNA SAM-dependent methyltransferase. All, are likely to be functionally equivalent and based on comparison of core motifs would appear to belong to a larger superfamily of S-adenosyl-methionine (AdoMet)-dependent RNA m5C methyltransferases . In E. coli, originally, the reading frame, encoding this protein, was interpreted as two reading frames, fmu and fmv. It has since been renamed, rsmB (Alternate Gene Symbols: rrmB, sun, fmu, fmv, yhdB). The recombinant protein, commonly referred to as Fmu, has been demonstrated to methylate only C967 of the 16S ribosomal RNA and to produce only m5C at that position. . The structure of the E. coli protein (Fmu) has been determined . Fmu contains three subdomains which share structural homology to DNA m5C methyltransferases and two RNA binding protein families. The N-terminal sequence of Fmu shares homology to another (noncatalytic) RNA binding protein, e.g. the ribosomal RNA antiterminator protein NusB (IPR011605 from INTERPRO). The catalytic lobe of Fmu, N1 domain, comprises the conserved core identified in all of the putative RNA m5C MTase sequences. Although the N1 domain is structurally homologous to known RNA binding proteins, there is no clear sequence motif that defines its role in RNA binding and recognition. At the functional centre of the catalytic lobe is the MTase domain of Fmu (residues 232-429), which adopts a fold typical of known AdoMet-dependent methyltransferases. In spite of the lack of a conserved RNA binding motif in the N1 domain, the close association of the N1 and MTase domains suggest that any RNA bound in the active site of the MTase domain is likely to interact with the N1 domain. ; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing.
Probab=100.00 E-value=0 Score=752.61 Aligned_cols=413 Identities=26% Similarity=0.370 Sum_probs=338.1
Q ss_pred HHHHHHH-HHHCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-------CHHH----H--HH
Q ss_conf 9999999-9956997899999999868588955799999999999975899999705689-------6799----9--99
Q gi|254780634|r 10 AIEILKD-IRTHKKPITNSLKDWGMSHRFAGSSDRASISNIVHDVLRKYLSSAYIMDSDD-------PESL----V--YA 75 (429)
Q Consensus 10 A~eiL~~-v~~~~~~ad~~L~~~~~~~r~lgs~DR~~i~~lvyg~lR~~~~ld~il~~~~-------~r~~----~--~~ 75 (429)
|+++|.+ |..++.|+|.++...+++++ ++.+||+|++||||||+|.+..||++|++.. ++.+ . ..
T Consensus 4 A~~~l~~V~~~~~sys~~~~~~~~~~~~-ls~~dr~Ll~ELvyGv~r~~~~Ld~li~~L~~kP~~~k~~~~~r~l~L~ly 82 (487)
T TIGR00563 4 AAEALIQVLEQGQSYSNLLPDLVLKQNE-LSDQDRRLLTELVYGVLRRLRALDYLIKKLIDKPLKGKPRVVHRLLRLVLY 82 (487)
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHH
T ss_conf 8999999973155145678998863057-883003231112223213504578999997417888874899999999999
Q ss_pred HHHHHCCCCHHHHHHHHHHHHHCCCCC-HHHHHHHHHCCCCCC------------CCCHHHHCCCHHHHH-HHHHHCC-H
Q ss_conf 999743889899999885433034332-046775442034336------------791235089988999-9998574-4
Q gi|254780634|r 76 VIMKDWDIPWEKMLSMLKEDLFSPPLP-KESVIKSFHSRQLEN------------APLHIQGNIPQWLQS-SFQSYFK-D 140 (429)
Q Consensus 76 ~l~~~~~~~~~~~v~~~~~~~~~~~~~-~~~~~~~~~~~~~~~------------~~~~i~~s~P~WL~~-~~~~~~g-e 140 (429)
.+.+..++|.++++++.|+.....+.. ...++|.+..+-..+ ......||||+||++ .|.+.|| .
T Consensus 83 ~~~yl~~vP~~AAv~e~V~~Ak~~g~~~l~~lVNGvLR~~qR~~~~~~~~l~~~~~~~~~~y~hP~WL~~~l~~~~~~~~ 162 (487)
T TIGR00563 83 QQLYLERVPAHAAVNEAVELAKALGLKGLKGLVNGVLRRFQREQVQSKDELLAEVRKLAEEYSHPEWLVKKLKKAYPGKW 162 (487)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCHH
T ss_conf 99997507824678899899997167522367888888886035765547888987411233586899999987244755
Q ss_pred HHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHC-----------------CCCCCCCC--CCCCCCCCCCCCCCCCC
Q ss_conf 899999986289861112477889989999989871-----------------88754547--54311345665444610
Q gi|254780634|r 141 TWLKEAKSLSMRAPLDLRTNTLKVNRCKLFKNLCHY-----------------GVHHSSIS--RFGLRIPATKGKSRLPN 201 (429)
Q Consensus 141 ~~~~~l~a~~~~~pl~iRvN~~k~~~~~~~~~L~~~-----------------gi~~~~~~--~~~~~l~~~~~~~~~~~ 201 (429)
+++.+++++|++||++||||..|++++++...|.+. |++..+.. |..++|..+ ..
T Consensus 163 ~~E~i~~~~nq~P~~~LRvN~~k~~r~~~~~~L~e~nltttamaGlPqGlrlGG~~~~~~~~~pdAv~L~~p------~~ 236 (487)
T TIGR00563 163 EAESICEANNQKPPMWLRVNQLKASREELLDLLAEENLTTTAMAGLPQGLRLGGIEGEKGDLAPDAVKLEKP------IA 236 (487)
T ss_pred HHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEECCCCCCCCCCCHHHHHCCCC------CH
T ss_conf 789999986777784402130034589999999885435777632765404356145566661456640465------23
Q ss_pred HHCCHHH-----CCCEEEEECCCCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHCCCCEEHHHHCCHHHHHHHHHHH
Q ss_conf 1109631-----26548984155654211236666625860134688279999998616881005524989999999998
Q gi|254780634|r 202 VMNDITF-----QRGWFEIQDEGSQIVSNLTAITNSSQILDFCAGGGGKTLALSMLLNNKGQIHAWDNNKSRMAPIVARI 276 (429)
Q Consensus 202 ~~~~~~f-----~~G~~~VQD~aSql~~~~l~~~~g~~vLD~CAapGGKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~ 276 (429)
+..++.| .+|+|+|||+|||+++.+|+|+++|.|||+||||||||+||+|+|+++|.|+|.|+|.+||+++.+|+
T Consensus 237 ~~~lp~fnGevseeGwvTvQD~Saq~va~~L~P~~~E~iLD~CAAPGGKttHI~EL~~~~g~v~a~D~~~~rl~~~~~~~ 316 (487)
T TIGR00563 237 VTKLPGFNGEVSEEGWVTVQDASAQWVATLLDPKNEETILDACAAPGGKTTHIAELMPDQGQVVALDLHKHRLKRVKENL 316 (487)
T ss_pred HHHCCCCCCCCCCCCCEEHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHH
T ss_conf 44377978723168532132168999999738898874773114845704767742479720898862125788999999
Q ss_pred HHCCCCCCEEE--ECCCCCCC----CCC----CCCEEEECCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 75028860882--15543445----723----246789627544504444422366724967899999987899999999
Q gi|254780634|r 277 KRAGIHNVQLH--SSWESLRN----LQE----HFTTVLVDAPCSGTGTWRRRPDIKWRLSQKNLIERTEEQKKILEESAQ 346 (429)
Q Consensus 277 ~r~g~~~v~~~--~~~~~~~~----~~~----~fd~vl~DaPCSg~G~~rr~Pe~~w~~~~~~~~~~~~lQ~~iL~~a~~ 346 (429)
+|+|++.+.+. +.+...+. .-+ .||||||||||||+||||||||+||+++|.|+.+|+.||.+||++-|+
T Consensus 317 ~RLGl~~i~~~~~~~~~~~~~~W~~e~~ksaa~fDRiLlDaPCSg~GvirR~PD~kw~~~~~diA~L~~LQ~~iL~aiaP 396 (487)
T TIGR00563 317 DRLGLTIIKVEEVDGDKAGPKEWLAEVEKSAAQFDRILLDAPCSGTGVIRRHPDIKWLRKPADIARLAELQKEILKAIAP 396 (487)
T ss_pred HHHCCEEEEEEEECCCCCCCCCCCCCCHHHHHHHCEEEECCCCCCCCCEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 86188378877202567766544452010233314215607877443300178755566856517899999999998856
Q ss_pred HHCCCCEEEEEECCCCHHHCHHHHHHHHHHCCCCEE-----EE-C--CCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCC
Q ss_conf 608983899977588824299989999985799799-----41-4--300222345555555567698499804479862
Q gi|254780634|r 347 FVRPEGYLVYITCSILPEENIQQINYFLSKNPHFSI-----DS-I--IDDWNQLYDLKNHPSLFIENGCCVLTPFLTNTD 418 (429)
Q Consensus 347 ~lk~gG~lvYsTCS~~~~Ene~vv~~fL~~~~~~~~-----~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~d 418 (429)
.||+||+|||||||++|+||++||++||.+|.+-+. .+ . ++++..++..+.........++++++||.+++|
T Consensus 397 ~vK~GGtLvYsTCt~~p~EN~~qI~aFL~~~A~~e~cetGt~dW~sepPdlsfE~~~P~~~~~~~~~g~lq~LP~~~~~D 476 (487)
T TIGR00563 397 LVKKGGTLVYSTCTVLPEENEEQIEAFLNATADQEHCETGTEDWLSEPPDLSFEKRLPEKVTESVRSGGLQILPHAEEGD 476 (487)
T ss_pred HHCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 53579758886145884432899999976535578751587433578887410023778889862236301068887877
Q ss_pred EEEEEEEEECC
Q ss_conf 15899996269
Q gi|254780634|r 419 GFFFCRLKRHT 429 (429)
Q Consensus 419 Gff~a~l~k~~ 429 (429)
|||+|.|+||+
T Consensus 477 GFFiA~L~Kka 487 (487)
T TIGR00563 477 GFFIAKLKKKA 487 (487)
T ss_pred CEEEEEEECCC
T ss_conf 41552110379
No 3
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=0 Score=601.80 Aligned_cols=298 Identities=33% Similarity=0.536 Sum_probs=261.3
Q ss_pred HHHCCCHHHHHHHHHHCCHH-HHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCC--CCCCCCCCCCCCCCCC
Q ss_conf 35089988999999857448-99999986289861112477889989999989871887545--4754311345665444
Q gi|254780634|r 122 IQGNIPQWLQSSFQSYFKDT-WLKEAKSLSMRAPLDLRTNTLKVNRCKLFKNLCHYGVHHSS--ISRFGLRIPATKGKSR 198 (429)
Q Consensus 122 i~~s~P~WL~~~~~~~~ge~-~~~~l~a~~~~~pl~iRvN~~k~~~~~~~~~L~~~gi~~~~--~~~~~~~l~~~~~~~~ 198 (429)
++|++|+|+++.|.+.||++ ++.++.+++.++|+++|||++|++++++.+.|...++...+ +.+.+.++...
T Consensus 50 ~~~~~p~w~~~~~~~~~~~~~~~~~~~a~~~~~~~~~Rvn~lk~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~----- 124 (355)
T COG0144 50 FRYSHPEWLVEKLPDALGEDEAEAIAAALLRPPPRSLRVNTLKADVEELLEALEEAGVLDEKPWVLDEVLRIEAS----- 124 (355)
T ss_pred HHHHCCHHHHHHHHHHHCHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCEEEEECC-----
T ss_conf 122063999999998826447999999715688725775264478789999864425534466655645897158-----
Q ss_pred CCCHHCCHHHCCCEEEEECCCCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHCCCCEE-HHHHCCHHHHHHHHHHHH
Q ss_conf 6101109631265489841556542112366666258601346882799999986168810-055249899999999987
Q gi|254780634|r 199 LPNVMNDITFQRGWFEIQDEGSQIVSNLTAITNSSQILDFCAGGGGKTLALSMLLNNKGQI-HAWDNNKSRMAPIVARIK 277 (429)
Q Consensus 199 ~~~~~~~~~f~~G~~~VQD~aSql~~~~l~~~~g~~vLD~CAapGGKt~~la~~~~~~g~i-~A~D~~~~Rl~~l~~~~~ 277 (429)
..+..++.|++|+|+|||+|||+++.+|+|+||++|||+||||||||+|||++|.|+|.+ +|+|++++|++.|++|++
T Consensus 125 -~~~~~~~~~~~G~~~vQd~sS~l~a~~L~p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~ 203 (355)
T COG0144 125 -GPIGRLPEFAEGLIYVQDEASQLPALVLDPKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLK 203 (355)
T ss_pred -CCCCCCHHHCCEEEEEECHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHHHH
T ss_conf -8765683560448999677876679971999979688807999769999999668998769974498789999999999
Q ss_pred HCCCCCCEEEECCCC-CCC---CCCCCCEEEECCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCE
Q ss_conf 502886088215543-445---7232467896275445044444223667249678999999878999999996089838
Q gi|254780634|r 278 RAGIHNVQLHSSWES-LRN---LQEHFTTVLVDAPCSGTGTWRRRPDIKWRLSQKNLIERTEEQKKILEESAQFVRPEGY 353 (429)
Q Consensus 278 r~g~~~v~~~~~~~~-~~~---~~~~fd~vl~DaPCSg~G~~rr~Pe~~w~~~~~~~~~~~~lQ~~iL~~a~~~lk~gG~ 353 (429)
|+|+.|+.+...|+. ... ..++||+|||||||||+||||||||+||+.+++++.+++.+|++||.+|+++|||||+
T Consensus 204 RlG~~nv~~~~~d~~~~~~~~~~~~~fD~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~ 283 (355)
T COG0144 204 RLGVRNVIVVNKDARRLAELLPGGEKFDRILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGV 283 (355)
T ss_pred HHCCCCEEEEECCCCCCCCCCCCCCCCCEEEECCCCCCCEEECCCCCHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCE
T ss_conf 71998348995133014311345577785998799987711335812320389999999999999999999984487988
Q ss_pred EEEEECCCCHHHCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCEEEEEEEEECC
Q ss_conf 9997758882429998999998579979941430022234555555556769849980447986215899996269
Q gi|254780634|r 354 LVYITCSILPEENIQQINYFLSKNPHFSIDSIIDDWNQLYDLKNHPSLFIENGCCVLTPFLTNTDGFFFCRLKRHT 429 (429)
Q Consensus 354 lvYsTCS~~~~Ene~vv~~fL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~dGff~a~l~k~~ 429 (429)
|||||||++|||||+||++||++|++|++++....+........ ...+++.|++||.|++||||+|+|+|..
T Consensus 284 LVYSTCS~~~eENE~vV~~~L~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~r~~p~~~~~dGFFia~l~k~~ 355 (355)
T COG0144 284 LVYSTCSLTPEENEEVVERFLERHPDFELEPVRLPWGPLFEGLG----SELGKTRRLYPHVHGTDGFFIAKLRKKR 355 (355)
T ss_pred EEEEECCCCHHCCHHHHHHHHHHCCCCEEECCCCCCCCCCCCCC----CCCCCEEEECCCCCCCCCEEEEEEEECC
T ss_conf 99990237500288999999985899544114455444444445----4556617867877897867999999679
No 4
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=100.00 E-value=0 Score=593.21 Aligned_cols=298 Identities=25% Similarity=0.366 Sum_probs=261.5
Q ss_pred HCCCHHHHHHHHHHCCH--HHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHCCC--CCCCCCCCCCCCCCCCCCCCC
Q ss_conf 08998899999985744--89999998628986111247788998999998987188--754547543113456654446
Q gi|254780634|r 124 GNIPQWLQSSFQSYFKD--TWLKEAKSLSMRAPLDLRTNTLKVNRCKLFKNLCHYGV--HHSSISRFGLRIPATKGKSRL 199 (429)
Q Consensus 124 ~s~P~WL~~~~~~~~ge--~~~~~l~a~~~~~pl~iRvN~~k~~~~~~~~~L~~~gi--~~~~~~~~~~~l~~~~~~~~~ 199 (429)
..+|+|++++++..+|+ +++++++++++++|..||||++|++++++.+.|...|+ ++.||++.|+++..... ..
T Consensus 2 ~~LP~~F~~~~~~llg~~~~~~~fl~~~~~p~~~~lRvN~lK~~~~~~~~~l~~~g~~~~pvpw~~~g~~~~~~~~--~~ 79 (471)
T PRK11933 2 VYLPDAFLTQMREAMPSHLSMDDFIAACQRPLRRSIRVNTLKISVADFLQLMAPKGWTLTPIPWCEEGFWIERDDE--DA 79 (471)
T ss_pred CCCCHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCC--CC
T ss_conf 7683999999999867840399999985699886598679879999999987765996322686787069841554--56
Q ss_pred CCHHCCHHHCCCEEEEECCCCCCCCCCC--CCCCCCEEEECCCCCCHHHHHHHHHHCCCCEEHHHHCCHHHHHHHHHHHH
Q ss_conf 1011096312654898415565421123--66666258601346882799999986168810055249899999999987
Q gi|254780634|r 200 PNVMNDITFQRGWFEIQDEGSQIVSNLT--AITNSSQILDFCAGGGGKTLALSMLLNNKGQIHAWDNNKSRMAPIVARIK 277 (429)
Q Consensus 200 ~~~~~~~~f~~G~~~VQD~aSql~~~~l--~~~~g~~vLD~CAapGGKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~ 277 (429)
..+..++.|..|+|+|||+|||+++.+| +|+||++|||+||||||||+|||++|.++|.|+|+|++.+|++.|.+|++
T Consensus 80 ~~lg~~~~~~aG~~yiQe~ssm~~~~~l~~~p~pge~VLDlCAAPGGKtt~la~~m~~~G~lvAnd~~~~R~~~L~~n~~ 159 (471)
T PRK11933 80 LPLGNTAEHLSGLFYIQEASSMLPVAALFADDNAPQRVLDMAAAPGSKTTQIAALMNNQGALVANEYSASRVKVLHANIS 159 (471)
T ss_pred CCCCCCHHHHCCEEEEECHHHHHHHHHHCCCCCCCCEEEEECCCCCHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHH
T ss_conf 78889836648549997768855788852488999989995778548999999975899669998388999999999999
Q ss_pred HCCCCCCEEEECCCCC--CCCCCCCCEEEECCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEE
Q ss_conf 5028860882155434--45723246789627544504444422366724967899999987899999999608983899
Q gi|254780634|r 278 RAGIHNVQLHSSWESL--RNLQEHFTTVLVDAPCSGTGTWRRRPDIKWRLSQKNLIERTEEQKKILEESAQFVRPEGYLV 355 (429)
Q Consensus 278 r~g~~~v~~~~~~~~~--~~~~~~fd~vl~DaPCSg~G~~rr~Pe~~w~~~~~~~~~~~~lQ~~iL~~a~~~lk~gG~lv 355 (429)
|+|+.|+.+...|... ..+.+.||+|||||||||+||+||+||++|+.+++++.+++.+|++||.+|+++|||||+||
T Consensus 160 r~G~~n~~vt~~d~~~~~~~~~~~FD~ILvDaPCSG~G~~rk~p~~~~~w~~~~~~~~~~~Q~~iL~~A~~~LkpGG~LV 239 (471)
T PRK11933 160 RCGVSNVALTHFDGRVFGAALPEMFDAILLDAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLV 239 (471)
T ss_pred HCCCCCEEEEECCHHHHHHHCCCCCCEEEECCCCCCCEEECCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEE
T ss_conf 71998479993586674032301066799878888873355597576418987999999999999999998738896899
Q ss_pred EEECCCCHHHCHHHHHHHHHHCCC-CEEEECCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCEEEEEEEEECC
Q ss_conf 977588824299989999985799-79941430022234555555556769849980447986215899996269
Q gi|254780634|r 356 YITCSILPEENIQQINYFLSKNPH-FSIDSIIDDWNQLYDLKNHPSLFIENGCCVLTPFLTNTDGFFFCRLKRHT 429 (429)
Q Consensus 356 YsTCS~~~~Ene~vv~~fL~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~dGff~a~l~k~~ 429 (429)
|||||++|+|||+||++||++||+ ++++++...++. .......++++|+|||+.+++|||+|+|||.+
T Consensus 240 YSTCT~~peENE~vv~~~l~~~p~~v~~~~l~~~~p~------~~~~~~~~g~~RlwPH~~~GEGhF~A~LrK~~ 308 (471)
T PRK11933 240 YSTCTLNREENQAVCLWLKETYGDAVEFESLGDLFPG------AEKALTEEGFLHVFPQIYDSEGFFVARLRKTA 308 (471)
T ss_pred EECCCCCHHHHHHHHHHHHHHCCCCEECCCCCCCCCC------CCCCCCCCCCEEECCCCCCCCCEEEEEEEECC
T ss_conf 9817999566799999999868863310334445777------54456767747868886587744999998657
No 5
>pfam01189 Nol1_Nop2_Fmu NOL1/NOP2/sun family.
Probab=100.00 E-value=0 Score=572.13 Aligned_cols=272 Identities=34% Similarity=0.504 Sum_probs=241.9
Q ss_pred HHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCC--CCCCCCCCCCCCCCCCCCCHHCCHHHCCCEEEEECCCCCC
Q ss_conf 99986289861112477889989999989871887545--4754311345665444610110963126548984155654
Q gi|254780634|r 145 EAKSLSMRAPLDLRTNTLKVNRCKLFKNLCHYGVHHSS--ISRFGLRIPATKGKSRLPNVMNDITFQRGWFEIQDEGSQI 222 (429)
Q Consensus 145 ~l~a~~~~~pl~iRvN~~k~~~~~~~~~L~~~gi~~~~--~~~~~~~l~~~~~~~~~~~~~~~~~f~~G~~~VQD~aSql 222 (429)
+|+++|++||++||||++|++++++.+.|...|++.++ +.+.++.+.... ..+..++.|++|+|+|||+|||+
T Consensus 1 il~a~n~~~p~~lRvN~lk~~~e~~~~~L~~~gi~~~~~~~~~~~~~~~~~~-----~~~~~l~~~~~G~~~vQD~aS~l 75 (277)
T pfam01189 1 ILEANNCSPPGTLRKNVLKTKRWSLLQALELAGVQLEPLGRYPHALPVGDLP-----YSIGSLPPFENGAVTVQDASSQL 75 (277)
T ss_pred CHHHCCCCCCEEEEECCCCCCHHHHHHHHHHCCCEEEECCCCCCEEEECCCC-----CCCCCCHHHHCCEEEEECHHHHH
T ss_conf 9444099998599976876999999999987799589888998717972688-----78121926559179998806778
Q ss_pred CCCCCCCCCCCEEEECCCCCCHHHHHHHHHHCCCCEEHHHHCCHHHHHHHHHHHHHCCCCCCEEEECCCCCC---CCCCC
Q ss_conf 211236666625860134688279999998616881005524989999999998750288608821554344---57232
Q gi|254780634|r 223 VSNLTAITNSSQILDFCAGGGGKTLALSMLLNNKGQIHAWDNNKSRMAPIVARIKRAGIHNVQLHSSWESLR---NLQEH 299 (429)
Q Consensus 223 ~~~~l~~~~g~~vLD~CAapGGKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~~~~~~---~~~~~ 299 (429)
++.+|+|+||++|||+||||||||+|||++|.++|.|+|+|++++|++.+++|++|+|+.|+.+...+.... ...+.
T Consensus 76 ~~~~L~p~~g~~VLD~CAaPGgKt~~la~l~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~~~~~~~d~~~~~~~~~~~~ 155 (277)
T pfam01189 76 DAIALNPQEDEFILDMCAAPGGKTTHIAELMKNEGTVVAVDRNKQRLKRVYANIQRLGVFNIIVQEGDARQIDQKLLGGE 155 (277)
T ss_pred HHHHHCCCCCCEEEEECCCCCCHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCC
T ss_conf 99971889999898836788816999998758987799837978999999999997599747999664445574346666
Q ss_pred CCEEEECCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHCHHHHHHHHHHCCC
Q ss_conf 46789627544504444422366724967899999987899999999608983899977588824299989999985799
Q gi|254780634|r 300 FTTVLVDAPCSGTGTWRRRPDIKWRLSQKNLIERTEEQKKILEESAQFVRPEGYLVYITCSILPEENIQQINYFLSKNPH 379 (429)
Q Consensus 300 fd~vl~DaPCSg~G~~rr~Pe~~w~~~~~~~~~~~~lQ~~iL~~a~~~lk~gG~lvYsTCS~~~~Ene~vv~~fL~~~~~ 379 (429)
||+||+||||||+||+||+||++|+.+++++.+++.+|++||++|+++|||||+|||||||++++|||+||++||++||+
T Consensus 156 fD~vLvDaPCSg~G~~rr~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lk~gG~lvYsTCSi~~eENe~vV~~fL~~~~~ 235 (277)
T pfam01189 156 FDRILLDAPCSGTGVIRRDPDIKWLRREADIAQLAELQKELLKAAWDLVKPGGVLVYSTCSVLPEENEAVIKYFLQKRPD 235 (277)
T ss_pred CCEEEECCCCCCCCEECCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHHCCC
T ss_conf 65799728988986345585312119999999999999999999999717699899994999989989999999986999
Q ss_pred CEEEECCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCEEEEEEEE
Q ss_conf 79941430022234555555556769849980447986215899996
Q gi|254780634|r 380 FSIDSIIDDWNQLYDLKNHPSLFIENGCCVLTPFLTNTDGFFFCRLK 426 (429)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~dGff~a~l~ 426 (429)
|++++.....+.. .......++++|+|||.|++||||+|+||
T Consensus 236 ~~~~~~~~~~~~~-----~~~~~~~~~~~r~~P~~~~~dGFF~A~Lr 277 (277)
T pfam01189 236 VELVPTGLSEGKI-----ALAKRIVKGGLQSLPHELNRDGFFFAKLR 277 (277)
T ss_pred CEEECCCCCCCCC-----CCCCCCCCCEEEECCCCCCCCCEEEEEEC
T ss_conf 8990466654543-----33455779907989899997727999859
No 6
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase; InterPro: IPR011023 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are primarily restricted to the euryarchaeota and proteobacteria respectively; where they are either described as either nucleolar protein or tRNA/rRNA cytosine-C5-methylase. They all have the S-adenosyl methionine (SAM) binding domain and are related to bacterial Fmu (16S rRNA m5C 967 methyltransferase) where the structure of the methyl transferase domain has been determined . In the eukaryota, the majority are annotated as being 'nucleolar protein'. None of the eukaryotic members in this family have a the SAM binding signature. Despite this, the yeast Nop2p is a probable RNA m(5)C methyltransferase, essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis ; localised to the nucleolus and is essential for viability . Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing . There is substantial identity between Nop2p and human p120 (NOL1), which is also called the proliferation-associated nucleolar antigen , . .
Probab=100.00 E-value=0 Score=540.76 Aligned_cols=269 Identities=28% Similarity=0.408 Sum_probs=238.1
Q ss_pred CCCCCCCCCHHHHHHHHHHCCCCC--CCCCCCCCCCCCCCCCCCCCCHHCCHHHCCCEEEEECCCCCCCCCCCCCC--CC
Q ss_conf 124778899899999898718875--45475431134566544461011096312654898415565421123666--66
Q gi|254780634|r 157 LRTNTLKVNRCKLFKNLCHYGVHH--SSISRFGLRIPATKGKSRLPNVMNDITFQRGWFEIQDEGSQIVSNLTAIT--NS 232 (429)
Q Consensus 157 iRvN~~k~~~~~~~~~L~~~gi~~--~~~~~~~~~l~~~~~~~~~~~~~~~~~f~~G~~~VQD~aSql~~~~l~~~--~g 232 (429)
|||||+|++++++.+.|...|+.. .||...+.++.... . ..-.+..+|.|..|+|.+|+.||++|+.+|+|+ ++
T Consensus 1 IRvNTLKi~~~~l~~~L~~~G~~LtP~p~~~~~~~~~~v~-~-s~~~iG~tPEyL~G~y~~q~aSSmiPp~aL~p~Gn~~ 78 (284)
T TIGR00446 1 IRVNTLKIEVEDLLERLENRGVKLTPKPTCEEGFFIEEVK-E-SPLSIGSTPEYLLGYYYVQEASSMIPPLALEPEGNEK 78 (284)
T ss_pred CCCCCCCCCHHHHHHHHHHCCEEECCCCCCCCCEEEEEEE-C-CCCCCCCCHHHHHHHHHHHHHHHCCCCEEECCCCCCC
T ss_conf 9001212588999988774470006722002742776540-2-6776465167885378998787367603017787688
Q ss_pred CEEEECCCCCCHHHHHHHHHHCCCCEEHHHHCCHHHHHHHHHHHHHCCCCCCEEEECCC-CCCCCCCC----CCEEEECC
Q ss_conf 25860134688279999998616881005524989999999998750288608821554-34457232----46789627
Q gi|254780634|r 233 SQILDFCAGGGGKTLALSMLLNNKGQIHAWDNNKSRMAPIVARIKRAGIHNVQLHSSWE-SLRNLQEH----FTTVLVDA 307 (429)
Q Consensus 233 ~~vLD~CAapGGKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~~~-~~~~~~~~----fd~vl~Da 307 (429)
++|||+||||||||+|||++|+|+|.|+|+|+++.|++.|..|+.|+|+.|+.+..-|. ..+....+ ||+|||||
T Consensus 79 ~~vlD~AAaPGgKTT~is~~m~N~G~i~Ane~~ksR~k~L~~NI~R~G~~n~~v~~~DgR~f~~~~~~~eifFD~iLLDA 158 (284)
T TIGR00446 79 ERVLDMAAAPGGKTTQISALMKNEGAIVANEVSKSRTKVLIANINRMGVLNVAVINVDGRKFGAVVLKMEIFFDRILLDA 158 (284)
T ss_pred CEEEEEECCCCCHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHEEEEEEECCCCHHHHHHCCCEEEEEEEEECC
T ss_conf 87999740889648999998658851899737634106678655562100333241376300123144303432145257
Q ss_pred CCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCC----CCEEEEEECCCCHHHCHHHHHHHHHHCCCCEEE
Q ss_conf 5445044444223667249678999999878999999996089----838999775888242999899999857997994
Q gi|254780634|r 308 PCSGTGTWRRRPDIKWRLSQKNLIERTEEQKKILEESAQFVRP----EGYLVYITCSILPEENIQQINYFLSKNPHFSID 383 (429)
Q Consensus 308 PCSg~G~~rr~Pe~~w~~~~~~~~~~~~lQ~~iL~~a~~~lk~----gG~lvYsTCS~~~~Ene~vv~~fL~~~~~~~~~ 383 (429)
||||.|+++|+|+.+-..+++|+..++.+|++||..|.++||+ ||.|||||||+++||||+||.|+|+++++...+
T Consensus 159 PCSG~GvI~KD~~~~~~~~~eD~~~~s~lQkeL~~~A~d~lk~nskhGGv~VYSTCsl~~eENE~V~dy~L~~r~~v~e~ 238 (284)
T TIGR00446 159 PCSGEGVIRKDPSRKKNRSEEDILEISKLQKELILAAFDALKPNSKHGGVLVYSTCSLEVEENEEVVDYLLRKRPDVVEE 238 (284)
T ss_pred CCCCCCEEEECHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCHHHHHHHHCCCCCEEEE
T ss_conf 87988337657233114772457764676799999998750445666888898503277122748999986179970775
Q ss_pred ECCCCCCCCCCCCCCCC--CCCCCCEEEEECCCCCCCEEEEEEEEE
Q ss_conf 14300222345555555--567698499804479862158999962
Q gi|254780634|r 384 SIIDDWNQLYDLKNHPS--LFIENGCCVLTPFLTNTDGFFFCRLKR 427 (429)
Q Consensus 384 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~P~~~~~dGff~a~l~k 427 (429)
.-...++.++....... ...-.+++|++||.++|||||+|+|||
T Consensus 239 ~~~~~~G~E~~~~~~~k~y~~~v~~~lR~~P~~~~~~GFFVAklRK 284 (284)
T TIGR00446 239 VNLLVKGDEAFTANKGKEYSEEVKKALRVFPQSYDCEGFFVAKLRK 284 (284)
T ss_pred ECCCHHCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCEEEEEECC
T ss_conf 2330000113466542100200210000287888977017754129
No 7
>KOG1122 consensus
Probab=100.00 E-value=0 Score=522.62 Aligned_cols=305 Identities=27% Similarity=0.365 Sum_probs=271.8
Q ss_pred CHHHHCCCHHHHHHHHHHCC-HHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCC---CCCCCCCCCCCCC
Q ss_conf 12350899889999998574-4899999986289861112477889989999989871887545---4754311345665
Q gi|254780634|r 120 LHIQGNIPQWLQSSFQSYFK-DTWLKEAKSLSMRAPLDLRTNTLKVNRCKLFKNLCHYGVHHSS---ISRFGLRIPATKG 195 (429)
Q Consensus 120 ~~i~~s~P~WL~~~~~~~~g-e~~~~~l~a~~~~~pl~iRvN~~k~~~~~~~~~L~~~gi~~~~---~~~~~~~l~~~~~ 195 (429)
.+..|.+-.++.+.+...++ .+..+++++++.+.|++||.||+|+-+.+....|...|+...| |+..|+++.....
T Consensus 131 ~~~~y~y~~~l~~~~~e~~~~~ev~~~~e~~~~~rp~tir~ntlk~~rrd~~~~L~nrgv~~~pl~~ws~vgl~v~~s~v 210 (460)
T KOG1122 131 GAHYYAYGVFLAEKLMELFPLVEVYEFLEANEKPRPVTIRTNTLKTRRRDLAVELSNRGVNLDPLGKWSKVGLVVFDSVV 210 (460)
T ss_pred CCCEECHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCC
T ss_conf 15000408899987545456999999987105789816872455101344799997456676654400042089953731
Q ss_pred CCCCCCHHCCHHHCCCEEEEECCCCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHCCCCEEHHHHCCHHHHHHHHHH
Q ss_conf 44461011096312654898415565421123666662586013468827999999861688100552498999999999
Q gi|254780634|r 196 KSRLPNVMNDITFQRGWFEIQDEGSQIVSNLTAITNSSQILDFCAGGGGKTLALSMLLNNKGQIHAWDNNKSRMAPIVAR 275 (429)
Q Consensus 196 ~~~~~~~~~~~~f~~G~~~VQD~aSql~~~~l~~~~g~~vLD~CAapGGKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~ 275 (429)
.+..++.|.+|++.+|+++|.+++..|+||||++||||||||||||+|||++|+|+|.|+|+|.+..|++.++.|
T Consensus 211 -----pigat~e~lag~~~LQ~~sS~Lpv~aL~Pq~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n 285 (460)
T KOG1122 211 -----PIGATPEYLAGHYMLQNASSFLPVMALDPQPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKAN 285 (460)
T ss_pred -----CCCCCHHHCCCCEEECCCCCCCEEEECCCCCCCEECCHHCCCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHH
T ss_conf -----157753323551242267623524520799887112121079950778999872774699613543779999988
Q ss_pred HHHCCCCCCEEEECCCCC---CCCCCCCCEEEECCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 875028860882155434---45723246789627544504444422366724967899999987899999999608983
Q gi|254780634|r 276 IKRAGIHNVQLHSSWESL---RNLQEHFTTVLVDAPCSGTGTWRRRPDIKWRLSQKNLIERTEEQKKILEESAQFVRPEG 352 (429)
Q Consensus 276 ~~r~g~~~v~~~~~~~~~---~~~~~~fd~vl~DaPCSg~G~~rr~Pe~~w~~~~~~~~~~~~lQ~~iL~~a~~~lk~gG 352 (429)
+.|+|+.|..+.+.+... .-+.+.|||||+||||||+|++.|.+..+|..+.+++.+++.+|++||.+|.++|++||
T Consensus 286 ~~rlGv~ntiv~n~D~~ef~~~~~~~~fDRVLLDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GG 365 (460)
T KOG1122 286 LHRLGVTNTIVSNYDGREFPEKEFPGSFDRVLLDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGG 365 (460)
T ss_pred HHHHCCCCEEEECCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 99748774489736763255333676423145348777775554551013301299998727999999999873115770
Q ss_pred EEEEEECCCCHHHCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCEEEEEEEEECC
Q ss_conf 89997758882429998999998579979941430022234555555556769849980447986215899996269
Q gi|254780634|r 353 YLVYITCSILPEENIQQINYFLSKNPHFSIDSIIDDWNQLYDLKNHPSLFIENGCCVLTPFLTNTDGFFFCRLKRHT 429 (429)
Q Consensus 353 ~lvYsTCS~~~~Ene~vv~~fL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~dGff~a~l~k~~ 429 (429)
+||||||||+++|||+||+|+|.++|+++++|....++..+..........-....|++||.|++||||+|+|+|-+
T Consensus 366 vLVYSTCSI~~~ENE~vV~yaL~K~p~~kL~p~~~~iG~~G~~~~~~~~psl~~~~r~yPh~hnmdgffvaKl~k~s 442 (460)
T KOG1122 366 VLVYSTCSITVEENEAVVDYALKKRPEVKLVPTGLDIGGEGRFRGGRFHPSLKLTRRFYPHVHNMDGFFVAKLKKAS 442 (460)
T ss_pred EEEEEEEECCHHHHHHHHHHHHHHCCCEEECCCCCCCCCCCCCCCCCCCCCHHHEEEECCCCCCCCHHHHHHHHHHC
T ss_conf 89998532260122899999997098627525656678887646754575333403306755577517999988650
No 8
>KOG2198 consensus
Probab=100.00 E-value=1.4e-45 Score=330.49 Aligned_cols=255 Identities=25% Similarity=0.282 Sum_probs=185.3
Q ss_pred CHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHH-----------CC-----CCCCCCCCCCCCCCCCCCC---CCC
Q ss_conf 4489999998628986111247788998999998987-----------18-----8754547543113456654---446
Q gi|254780634|r 139 KDTWLKEAKSLSMRAPLDLRTNTLKVNRCKLFKNLCH-----------YG-----VHHSSISRFGLRIPATKGK---SRL 199 (429)
Q Consensus 139 ge~~~~~l~a~~~~~pl~iRvN~~k~~~~~~~~~L~~-----------~g-----i~~~~~~~~~~~l~~~~~~---~~~ 199 (429)
+++|..+++....+-|...|+......-+++...+++ +| +...+|+|.+..+...... .+.
T Consensus 39 ~~e~~~~~~~ir~~Lps~fr~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~e~~~~~p~~p~~~a~~~~~~~~~~r~~ 118 (375)
T KOG2198 39 EDEFGDFWETIRKPLPSTFRYTALVNNADALLSIFEEYEFESLKDRVIEGLKFEAPFELPWYPDNLAFEKDVKLDEIRKS 118 (375)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCC
T ss_conf 57899999998861540366887503338888777520212556553244566764468999643001203764534057
Q ss_pred CCHHCCHH-----HCCCEEEEECCCCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHC---CCCEEHHHHCCHHHHHH
Q ss_conf 10110963-----12654898415565421123666662586013468827999999861---68810055249899999
Q gi|254780634|r 200 PNVMNDIT-----FQRGWFEIQDEGSQIVSNLTAITNSSQILDFCAGGGGKTLALSMLLN---NKGQIHAWDNNKSRMAP 271 (429)
Q Consensus 200 ~~~~~~~~-----f~~G~~~VQD~aSql~~~~l~~~~g~~vLD~CAapGGKt~~la~~~~---~~g~i~A~D~~~~Rl~~ 271 (429)
+.+.+.+. ...|.++-||.+|++++.+|+++||++||||||||||||.+|.+-.- +.|.|+|||.+.+|+..
T Consensus 119 ~~l~rf~~fl~~e~~vg~i~rqeavSmlPvL~L~v~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~ 198 (375)
T KOG2198 119 PPLSRFHGFLKLETGVGNIYRQEAVSMLPVLALGVKPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNM 198 (375)
T ss_pred CCHHHCCHHHHHHCCCCCCHHHHHHHCCCHHHCCCCCCCEEEEECCCCCCCHHHHHHHHHCCCCCCEEEECCCCHHHHHH
T ss_conf 70555026766421445211242442264020226799844420138984489999997237777736753457889999
Q ss_pred HHHHHHHCCCCCCEEEECCCCCC----------CCCCCCCEEEECCCCCCCHHHHHHHHHH-HHCCHHHHHHHHHHHHHH
Q ss_conf 99998750288608821554344----------5723246789627544504444422366-724967899999987899
Q gi|254780634|r 272 IVARIKRAGIHNVQLHSSWESLR----------NLQEHFTTVLVDAPCSGTGTWRRRPDIK-WRLSQKNLIERTEEQKKI 340 (429)
Q Consensus 272 l~~~~~r~g~~~v~~~~~~~~~~----------~~~~~fd~vl~DaPCSg~G~~rr~Pe~~-w~~~~~~~~~~~~lQ~~i 340 (429)
|.+.++|+-..|..+...+.... .....||+|||||||||.||+|++|++. |-.+.+.-..|+.||..|
T Consensus 199 L~~q~~~l~~~~~~v~~~~~~~~p~~~~~~~~~~~~~~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~i 278 (375)
T KOG2198 199 LVHQLKRLPSPNLLVTNHDASLFPNIYLKDGNDKEQLKFDRVLVDVPCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRI 278 (375)
T ss_pred HHHHHHCCCCCCEEEECCCCEECCCCCCCCCCHHHHHHCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHH
T ss_conf 99998526984333431211005641014676033441253687145689843022802766655541135973899999
Q ss_pred HHHHHHHHCCCCEEEEEECCCCHHHCHHHHHHHHHHCC-CCEEEECCCCCCCCC
Q ss_conf 99999960898389997758882429998999998579-979941430022234
Q gi|254780634|r 341 LEESAQFVRPEGYLVYITCSILPEENIQQINYFLSKNP-HFSIDSIIDDWNQLY 393 (429)
Q Consensus 341 L~~a~~~lk~gG~lvYsTCS~~~~Ene~vv~~fL~~~~-~~~~~~~~~~~~~~~ 393 (429)
|.++.++||+||+|||||||++|.|||.||+..|+.+. .+++++....++...
T Consensus 279 L~rgl~lLk~GG~lVYSTCSLnpieNEaVV~~~L~~~~~~~~lv~~~~~lp~l~ 332 (375)
T KOG2198 279 LRRGLRLLKVGGRLVYSTCSLNPIENEAVVQEALQKVGGAVELVDVSGDLPGLK 332 (375)
T ss_pred HHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCEEECCCCCCCE
T ss_conf 999998725787799942578720027999999998368543223036565525
No 9
>KOG2360 consensus
Probab=100.00 E-value=2e-41 Score=301.43 Aligned_cols=399 Identities=21% Similarity=0.203 Sum_probs=263.8
Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCH-HHHHHHHHHHCCCCHHH
Q ss_conf 99999999995699789999999986858895579999999999997589999970568967-99999999743889899
Q gi|254780634|r 9 AAIEILKDIRTHKKPITNSLKDWGMSHRFAGSSDRASISNIVHDVLRKYLSSAYIMDSDDPE-SLVYAVIMKDWDIPWEK 87 (429)
Q Consensus 9 AA~eiL~~v~~~~~~ad~~L~~~~~~~r~lgs~DR~~i~~lvyg~lR~~~~ld~il~~~~~r-~~~~~~l~~~~~~~~~~ 87 (429)
.|.+||..+..+...+..+.-. +++ ++--.+..++-.++|.+..++.++...... .....-... ...-.+.
T Consensus 3 ~~~~~l~~~~~~~~s~k~l~~~---s~~----q~~k~~l~~v~~~~k~r~~l~~i~~d~~~~~~~~~~~~~~-~~~l~~~ 74 (413)
T KOG2360 3 EAAEILRDVEKKEGSIKMLVYE---SSK----QNPKRTLALVCETLKYRPVLDEILEDSELKDAKMLARLVH-MVVLVHD 74 (413)
T ss_pred CCHHHHHHHHHHHHHHHHHHHH---HHC----CCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCC-CEEEHHH
T ss_conf 4116666477643079999876---511----0539999999988764489999972024344566465435-3200334
Q ss_pred HHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCHHHHCCCHHHHHHHHHHCC-HHHHHHHHHHCCCCCCCCCCCCCCCCH
Q ss_conf 9998854330343320467754420343367912350899889999998574-489999998628986111247788998
Q gi|254780634|r 88 MLSMLKEDLFSPPLPKESVIKSFHSRQLENAPLHIQGNIPQWLQSSFQSYFK-DTWLKEAKSLSMRAPLDLRTNTLKVNR 166 (429)
Q Consensus 88 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~P~WL~~~~~~~~g-e~~~~~l~a~~~~~pl~iRvN~~k~~~ 166 (429)
....... ................+... ...+ =.+.+-. ..+ +....+....+.++|.++|+|++|.+.
T Consensus 75 ll~~~~~--~~~~~~~~~el~~~~~~~~~-------e~~~-~~v~~~~-k~~~~~~~~l~~t~~~~~pr~vRINtlk~~~ 143 (413)
T KOG2360 75 LLLSKIK--RSGLMIDKRELKVIRLRLIL-------RLKI-ETVMLKK-KRKVKSLRELKLTMKIPLPRYVRINTLKGTT 143 (413)
T ss_pred HHHCCCC--CCCCEECCCHHHHHHHHHHH-------HHHH-HHHHHHH-HHHHHHHHHHHCCCCCCCCEEEEEECCCCCH
T ss_conf 4310246--53222304314444487775-------6679-9988876-3137888876305777775357850344741
Q ss_pred HHHHHHHHHCCCC-CCCCCCCCCC----CCCCCCCCCCCCHHCCHHHCCCEEEEECCCCCCCCCCCCCCCCCEEEECCCC
Q ss_conf 9999989871887-5454754311----3456654446101109631265489841556542112366666258601346
Q gi|254780634|r 167 CKLFKNLCHYGVH-HSSISRFGLR----IPATKGKSRLPNVMNDITFQRGWFEIQDEGSQIVSNLTAITNSSQILDFCAG 241 (429)
Q Consensus 167 ~~~~~~L~~~gi~-~~~~~~~~~~----l~~~~~~~~~~~~~~~~~f~~G~~~VQD~aSql~~~~l~~~~g~~vLD~CAa 241 (429)
++....|..++.. .+...|..+. .+..........+...++|++|.+.+||.+|.+++++|+|.+|..|+|.|||
T Consensus 144 ~e~~~~L~~e~~~~~~~l~p~~~~~D~~~~~ll~~~~~n~i~~~~ly~~g~~ilqd~asclpA~ll~p~~g~~v~d~caa 223 (413)
T KOG2360 144 DEALDYLDYEKWKMITELKPDEFYVDPHVENLIIFPPSNFIVEHELYKNGKFILQDKASCLPAHLLDPRPGSRVIDTCAA 223 (413)
T ss_pred HHHHHHHHHHHHHHHHHCCCCCEECCCCCHHHCCCCCCCCEEECCCCCCCCEEEECHHHCCHHHHCCCCCCCCEEEECCC
T ss_conf 54400331444555654078605406300645302787522441121158647702210353654389998823554146
Q ss_pred CCHHHHHHHHHHCCCCEEHHHHCCHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCC---CCCCEEEECCCCCCCHHHHHH
Q ss_conf 88279999998616881005524989999999998750288608821554344572---324678962754450444442
Q gi|254780634|r 242 GGGKTLALSMLLNNKGQIHAWDNNKSRMAPIVARIKRAGIHNVQLHSSWESLRNLQ---EHFTTVLVDAPCSGTGTWRRR 318 (429)
Q Consensus 242 pGGKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~~~~~~~~~---~~fd~vl~DaPCSg~G~~rr~ 318 (429)
||-||.|+|..|.|+|+|+|.|.++.|.+.+.+-+..+|..+++....|....... .....||+|.+|||+|+..|.
T Consensus 224 pg~KTsH~a~i~~n~gki~afe~d~~r~~tl~~~l~~ag~~~~~~~~~df~~t~~~~~~~~v~~iL~DpscSgSgm~~r~ 303 (413)
T KOG2360 224 PGNKTSHLAAIMRNQGKIYAFERDAKRAATLRKLLKIAGVSIVESVEGDFLNTATPEKFRDVTYILVDPSCSGSGMVSRQ 303 (413)
T ss_pred CCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCE
T ss_conf 65321129988622487213234168899999999871787453201444477781002650599857987877652232
Q ss_pred HHHH--HHCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHCHHHHHHHHHHCCCCEEEECCCCCCCCCCCC
Q ss_conf 2366--72496789999998789999999960898389997758882429998999998579979941430022234555
Q gi|254780634|r 319 PDIK--WRLSQKNLIERTEEQKKILEESAQFVRPEGYLVYITCSILPEENIQQINYFLSKNPHFSIDSIIDDWNQLYDLK 396 (429)
Q Consensus 319 Pe~~--w~~~~~~~~~~~~lQ~~iL~~a~~~lk~gG~lvYsTCS~~~~Ene~vv~~fL~~~~~~~~~~~~~~~~~~~~~~ 396 (429)
-++. =..+++.+..|...|..++.+|..+- .=-++||||||+.+||||+||+..|..+|++....... .-..|...
T Consensus 304 ~~~~~~e~~~~~rL~~L~~fq~~~~~hal~fp-~~k~vvystcs~~reene~vv~d~l~~~p~~~~l~~kK-~~p~w~~r 381 (413)
T KOG2360 304 DEDPGAETESPERLENLQSFQIRILKHALTFP-NLKRLVYSTCSLHREENEQVVQEVLQQNPDAKRLAPKK-VLPAWPHR 381 (413)
T ss_pred EECCCCCCCCHHHHHHHHHHHHHHHHHHHCCC-CHHHEEEECCHHHHHHHHHHHHHHHHHCHHHHHHHHHH-CCHHHHHC
T ss_conf 42267775357999987877999999886077-53240110232545441599999875181776633343-23345534
Q ss_pred CCCCCCCCCCEEEEECCCCCCCEEEEEEEEEC
Q ss_conf 55555676984998044798621589999626
Q gi|254780634|r 397 NHPSLFIENGCCVLTPFLTNTDGFFFCRLKRH 428 (429)
Q Consensus 397 ~~~~~~~~~~~~~~~P~~~~~dGff~a~l~k~ 428 (429)
........++++|-.|...+++|||+|.+.|+
T Consensus 382 g~~~~~~~e~~lr~~p~~~~~~gffva~fer~ 413 (413)
T KOG2360 382 GLSTFSGAEHCLRASPKSTLTIGFFVALFERV 413 (413)
T ss_pred CCCCCCCCCCCEECCCCCCCCCEEEEEEEECC
T ss_conf 77545421133042557887532799985049
No 10
>pfam05175 MTS Methyltransferase small domain. This domain is found in ribosomal RNA small subunit methyltransferase C as well as other methyltransferases .
Probab=99.35 E-value=9.8e-12 Score=99.51 Aligned_cols=132 Identities=17% Similarity=0.184 Sum_probs=110.3
Q ss_pred CCCCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHCCCCEEHHHHCCHHHHHHHHHHHHHCCCCCCEEEECCCCCCCC
Q ss_conf 15565421123666662586013468827999999861688100552498999999999875028860882155434457
Q gi|254780634|r 217 DEGSQIVSNLTAITNSSQILDFCAGGGGKTLALSMLLNNKGQIHAWDNNKSRMAPIVARIKRAGIHNVQLHSSWESLRNL 296 (429)
Q Consensus 217 D~aSql~~~~l~~~~g~~vLD~CAapGGKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~~~~~~~~ 296 (429)
|.+|++....++..++.+|||+|||.|-=++.+|.... ..+|+++|+++.-++..++|+++.|+.|+++...|......
T Consensus 17 D~Gt~lLl~~l~~~~~g~vLDlGcG~G~i~~~la~~~p-~~~v~~vDi~~~Al~~a~~N~~~n~l~~v~v~~~D~~~~~~ 95 (170)
T pfam05175 17 DIGSRLLLSHLPKPLGGKVLDLGCGYGVLGAALAKRSP-DLEVTMVDINARALESARANLAANGLENGEVFWSDLYSAVE 95 (170)
T ss_pred CHHHHHHHHCCCCCCCCCEEEECCCCCHHHHHHHHHCC-CCEEEECHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCC
T ss_conf 98999999708977899499977648298999999789-86798515449999999999998099848999744666577
Q ss_pred CCCCCEEEECCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHC
Q ss_conf 2324678962754450444442236672496789999998789999999960898389997758882429
Q gi|254780634|r 297 QEHFTTVLVDAPCSGTGTWRRRPDIKWRLSQKNLIERTEEQKKILEESAQFVRPEGYLVYITCSILPEEN 366 (429)
Q Consensus 297 ~~~fd~vl~DaPCSg~G~~rr~Pe~~w~~~~~~~~~~~~lQ~~iL~~a~~~lk~gG~lvYsTCS~~~~En 366 (429)
.++||.|+..+|= +... ..-..+...++..|.+.|+|||.|.-.+=+..+.|.
T Consensus 96 ~~~fD~IvsNPP~--------------h~g~---~~~~~~~~~~i~~A~~~L~pgG~l~~V~n~~l~y~~ 148 (170)
T pfam05175 96 PGKFDLIISNPPF--------------HAGK---ATDYDVAQRFIAGAARHLKPGGELWIVANRHLGYPS 148 (170)
T ss_pred CCCEEEEEECCCC--------------CCCC---CCCHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCHH
T ss_conf 8866089989772--------------1142---032899999999999961649799999989999479
No 11
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=99.22 E-value=1.8e-10 Score=90.85 Aligned_cols=120 Identities=15% Similarity=0.238 Sum_probs=97.2
Q ss_pred CCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHCCCCEEHHHHCCHHHHHHHHHHHHHCCCCCCEEEECCCCC-CCCCCCC
Q ss_conf 421123666662586013468827999999861688100552498999999999875028860882155434-4572324
Q gi|254780634|r 222 IVSNLTAITNSSQILDFCAGGGGKTLALSMLLNNKGQIHAWDNNKSRMAPIVARIKRAGIHNVQLHSSWESL-RNLQEHF 300 (429)
Q Consensus 222 l~~~~l~~~~g~~vLD~CAapGGKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~~~~~-~~~~~~f 300 (429)
-+......+||++|||+.+|+|--++..|.+.+.+|+|+.+|+++.-+...++|+++.|+.||++...+... +...+.|
T Consensus 64 nP~~~a~l~pGe~VLDLGcG~G~d~~~aA~~VG~~G~ViGVD~s~~ML~~Ar~~a~~~G~~NVeF~~Gdae~LPl~D~Sf 143 (258)
T PRK11873 64 NPTALAELKPGETVLDLGSGAGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYTNVEFRLGEIEALPVADGSV 143 (258)
T ss_pred CCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCE
T ss_conf 85454657999989994788777599999986999779998599999999999999759975599995553136898835
Q ss_pred CEEEECCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCH
Q ss_conf 678962754450444442236672496789999998789999999960898389997758882
Q gi|254780634|r 301 TTVLVDAPCSGTGTWRRRPDIKWRLSQKNLIERTEEQKKILEESAQFVRPEGYLVYITCSILP 363 (429)
Q Consensus 301 d~vl~DaPCSg~G~~rr~Pe~~w~~~~~~~~~~~~lQ~~iL~~a~~~lk~gG~lvYsTCS~~~ 363 (429)
|.|+.- .++.--||- .+.|.++.+.|||||+|+.|-=-...
T Consensus 144 DvViSn------cVlnl~pDk----------------~~vl~E~~RVLKPGGRl~ISDiv~~~ 184 (258)
T PRK11873 144 DVIISN------CVINLSPDK----------------ERVFREAFRVLKPGGRFAISDVVLTG 184 (258)
T ss_pred EEEEEC------CEEECCCCH----------------HHHHHHHHHHCCCCCEEEEEEEECCC
T ss_conf 199882------467607987----------------99999999962889789999741277
No 12
>cd00620 Methyltransferase_Sun N-terminal RNA binding domain of the methyltransferase Sun. The rRNA-specific 5-methylcytidine transferase Sun, also known as RrmB or Fmu shares the RNA-binding non-catalytic domain with the transcription termination factor NusB. The precise biological role of this domain in Sun is unknown, although it is likely to be involved in sequence-specific RNA binding. The C-terminal methyltransferase domain of Sun has been shown to catalyze formation of m5C at position 967 of 16S rRNA in Escherichia coli.
Probab=99.20 E-value=1.3e-10 Score=91.86 Aligned_cols=108 Identities=16% Similarity=0.172 Sum_probs=77.0
Q ss_pred HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCH----------HH
Q ss_conf 16899999999999995699789999999986858895579999999999997589999970568967----------99
Q gi|254780634|r 3 LGGQIAAAIEILKDIRTHKKPITNSLKDWGMSHRFAGSSDRASISNIVHDVLRKYLSSAYIMDSDDPE----------SL 72 (429)
Q Consensus 3 ~~aR~~AA~eiL~~v~~~~~~ad~~L~~~~~~~r~lgs~DR~~i~~lvyg~lR~~~~ld~il~~~~~r----------~~ 72 (429)
+.||. +|+++|.+|+.++++++.+++... .+ .++++||+|+++||||++||++++|+++++..++ .+
T Consensus 1 mnaR~-~A~~iL~~V~~~~~~~~~~l~~~~-~~-~l~~~Dra~~~~lv~g~lR~~~~ld~~l~~~l~~p~~~~~~~~~~l 77 (126)
T cd00620 1 MNARS-TAAEVLRDVLQRGASLNAVLSALQ-KK-DKSDRDRGLATELVYGTLRWLALLDWIINPLLKKPDVGKDPDVRNL 77 (126)
T ss_pred CCHHH-HHHHHHHHHHHCCCCHHHHHHHHH-HC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHH
T ss_conf 98999-999999999967998999999988-65-7998889999999999998199999999998577711079999999
Q ss_pred -HHH-HHHHHCCCCHHHHHHHHHHHHHCCC-CCHHHHHHHHHCC
Q ss_conf -999-9997438898999998854330343-3204677544203
Q gi|254780634|r 73 -VYA-VIMKDWDIPWEKMLSMLKEDLFSPP-LPKESVIKSFHSR 113 (429)
Q Consensus 73 -~~~-~l~~~~~~~~~~~v~~~~~~~~~~~-~~~~~~~~~~~~~ 113 (429)
..+ .......+|.+++++++++...... .....+++++..+
T Consensus 78 Lrlg~yql~~~~~p~~A~VneaV~lak~~~~~~~~~lVNAVLR~ 121 (126)
T cd00620 78 LRLGLYQLLYLDVPPHAAVDETVEIAKIRKDLGRAGLVNAVLRR 121 (126)
T ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHH
T ss_conf 99999998707999610699999999986899766613898308
No 13
>PRK08317 hypothetical protein; Provisional
Probab=99.19 E-value=2.9e-10 Score=89.48 Aligned_cols=129 Identities=22% Similarity=0.255 Sum_probs=98.3
Q ss_pred CCCCCCCCCCCEEEECCCCCCHHHHHHHHHHCCCCEEHHHHCCHHHHHHHHHHHHHCCCCCCEEEECCCC-CCCCCCCCC
Q ss_conf 2112366666258601346882799999986168810055249899999999987502886088215543-445723246
Q gi|254780634|r 223 VSNLTAITNSSQILDFCAGGGGKTLALSMLLNNKGQIHAWDNNKSRMAPIVARIKRAGIHNVQLHSSWES-LRNLQEHFT 301 (429)
Q Consensus 223 ~~~~l~~~~g~~vLD~CAapGGKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~~~~-~~~~~~~fd 301 (429)
...+|+++||++|||++||+|.=+..|+.+++..|+|+++|+++.-+...++++...+ .|+.+...+.. ++...++||
T Consensus 11 ~l~~L~l~pG~~vLDiGcG~G~~~~~la~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~-~~v~~~~~d~~~lp~~d~sfD 89 (241)
T PRK08317 11 TFELLAVQPGERVLDVGCGPGNDLRELADRVGPEGRVVGIDRSEAMLALARERAAGLL-SNVEFVRGDADGLPFPDESFD 89 (241)
T ss_pred HHHHCCCCCCCEEEEECCCCCHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHCC-CCEEEEECCHHHCCCCCCCCC
T ss_conf 9973699997999996641749999999974999789999698899999999986228-964999554643589888704
Q ss_pred EEEECCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEE-----EECCCCHHHCHHHHHHHHH
Q ss_conf 7896275445044444223667249678999999878999999996089838999-----7758882429998999998
Q gi|254780634|r 302 TVLVDAPCSGTGTWRRRPDIKWRLSQKNLIERTEEQKKILEESAQFVRPEGYLVY-----ITCSILPEENIQQINYFLS 375 (429)
Q Consensus 302 ~vl~DaPCSg~G~~rr~Pe~~w~~~~~~~~~~~~lQ~~iL~~a~~~lk~gG~lvY-----sTCS~~~~Ene~vv~~fL~ 375 (429)
.|.+. .++..-|| ..+.|.++.+.|||||++|- .||.+.+. +.+..+.+++
T Consensus 90 ~v~~~------~~l~h~~d----------------~~~~l~e~~RvLkPGG~~vi~d~Dw~~~~~~~~-~~~~~~~i~~ 145 (241)
T PRK08317 90 AVRSD------RVLQHLED----------------PRRALAEMARVLRPGGRAVVLDTDWDTLVIHSG-DRALMRKILN 145 (241)
T ss_pred EEEHH------HHHHHCCC----------------HHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCC-CHHHHHHHHH
T ss_conf 56221------15762258----------------999999999981888389999667886742898-8899999999
No 14
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=99.17 E-value=9.8e-10 Score=85.91 Aligned_cols=133 Identities=20% Similarity=0.255 Sum_probs=109.0
Q ss_pred CCCCCCCCCCCEEEECCCCCCHHHHHHHHHHCCCCEEHHHHCCHHHHHHHHHHHHHCCCCCCEEEECCCC--CCCCCCCC
Q ss_conf 2112366666258601346882799999986168810055249899999999987502886088215543--44572324
Q gi|254780634|r 223 VSNLTAITNSSQILDFCAGGGGKTLALSMLLNNKGQIHAWDNNKSRMAPIVARIKRAGIHNVQLHSSWES--LRNLQEHF 300 (429)
Q Consensus 223 ~~~~l~~~~g~~vLD~CAapGGKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~~~~--~~~~~~~f 300 (429)
....|.|+||+++||.-||-|+=|..++ ++.+.++++|.|.++.+++.+++|++|+|+.|+++...++. +.... +|
T Consensus 26 ~ls~L~~~~g~~l~DIGaGtGsi~iE~a-~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~Ap~~L~~~~-~~ 103 (187)
T COG2242 26 TLSKLRPRPGDRLWDIGAGTGSITIEWA-LAGPSGRVIAIERDEEALELIERNAARFGVDNLEVVEGDAPEALPDLP-SP 103 (187)
T ss_pred HHHHHCCCCCCEEEEECCCCCHHHHHHH-HHCCCCEEEEEECCHHHHHHHHHHHHHHCCCCEEEEECCCHHHHCCCC-CC
T ss_conf 8986088999989995788668999999-739885599992588899999999998499967999546457636999-99
Q ss_pred CEEEECCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHCHHHHHHHHHHCCCC
Q ss_conf 67896275445044444223667249678999999878999999996089838999775888242999899999857997
Q gi|254780634|r 301 TTVLVDAPCSGTGTWRRRPDIKWRLSQKNLIERTEEQKKILEESAQFVRPEGYLVYITCSILPEENIQQINYFLSKNPHF 380 (429)
Q Consensus 301 d~vl~DaPCSg~G~~rr~Pe~~w~~~~~~~~~~~~lQ~~iL~~a~~~lk~gG~lvYsTCS~~~~Ene~vv~~fL~~~~~~ 380 (429)
|+|++- |+|.+ ..||+.+|..|||||+||--.- ..||+...-..++++..+
T Consensus 104 daiFIG----Gg~~i----------------------~~ile~~~~~l~~ggrlV~nai---tlE~~~~a~~~~~~~g~~ 154 (187)
T COG2242 104 DAIFIG----GGGNI----------------------EEILEAAWERLKPGGRLVANAI---TLETLAKALEALEQLGGR 154 (187)
T ss_pred CEEEEC----CCCCH----------------------HHHHHHHHHHCCCCCEEEEEEE---CHHHHHHHHHHHHHCCCC
T ss_conf 999987----98777----------------------8999999997186876999860---088899999999972985
Q ss_pred EEEECC
Q ss_conf 994143
Q gi|254780634|r 381 SIDSII 386 (429)
Q Consensus 381 ~~~~~~ 386 (429)
+++.+.
T Consensus 155 ei~~v~ 160 (187)
T COG2242 155 EIVQVQ 160 (187)
T ss_pred EEEEEE
T ss_conf 699998
No 15
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=99.13 E-value=4.7e-09 Score=81.31 Aligned_cols=134 Identities=18% Similarity=0.235 Sum_probs=104.9
Q ss_pred CCCCCCCCCCCEEEECCCCCCHHHHHHHHHHCCCCEEHHHHCCHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCCE
Q ss_conf 21123666662586013468827999999861688100552498999999999875028860882155434457232467
Q gi|254780634|r 223 VSNLTAITNSSQILDFCAGGGGKTLALSMLLNNKGQIHAWDNNKSRMAPIVARIKRAGIHNVQLHSSWESLRNLQEHFTT 302 (429)
Q Consensus 223 ~~~~l~~~~g~~vLD~CAapGGKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~~~~~~~~~~~fd~ 302 (429)
+...|+++||+.|||.-||.|.=|...|-+ ...|+|+|+|.++.++..+++|++|.|+.|+.+....+. ..+.+.+|+
T Consensus 22 ~LskL~l~~~~vvwDIGaGsGsvsiEaa~~-~p~~~V~AvE~~~~~~~~i~~N~~~fg~~nv~~i~g~Ap-~~l~~~pD~ 99 (186)
T PRK08287 22 SLSKLELHRAKHLIDVGAGTGSVSIEAALQ-FPSLQVTAIERNPAALRLIKENRQRFGCGNIDIIPGEAP-ITLTGKADA 99 (186)
T ss_pred HHHHCCCCCCCEEEEECCCCCHHHHHHHHH-CCCCEEEEEECCHHHHHHHHHHHHHHCCCCEEEEECCCC-HHCCCCCCE
T ss_conf 999719999999999578877899999997-899889999379899999999899729998799937781-103578984
Q ss_pred EEECCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHCHHHHHHHHHHCC--CC
Q ss_conf 8962754450444442236672496789999998789999999960898389997758882429998999998579--97
Q gi|254780634|r 303 VLVDAPCSGTGTWRRRPDIKWRLSQKNLIERTEEQKKILEESAQFVRPEGYLVYITCSILPEENIQQINYFLSKNP--HF 380 (429)
Q Consensus 303 vl~DaPCSg~G~~rr~Pe~~w~~~~~~~~~~~~lQ~~iL~~a~~~lk~gG~lvYsTCS~~~~Ene~vv~~fL~~~~--~~ 380 (429)
|++- |+|- .+ .+||+.++..|+|||+||-+.-|+ |+...+-.+++++. ++
T Consensus 100 vFIG----Gsgg--------------~l-------~~il~~~~~~L~~gGriVinavtl---et~~~a~~~~~~~~~~~~ 151 (186)
T PRK08287 100 IFMG----GSGG--------------HL-------TAIIDWALGHLHPGGRLVLNFILQ---ENLHSALAHLEKIGACEL 151 (186)
T ss_pred EEEE----CCCC--------------CH-------HHHHHHHHHHCCCCCEEEEEEEEH---HHHHHHHHHHHHCCCCCE
T ss_conf 9997----4789--------------88-------999999997579998999982608---779999999997699761
Q ss_pred EEEECC
Q ss_conf 994143
Q gi|254780634|r 381 SIDSII 386 (429)
Q Consensus 381 ~~~~~~ 386 (429)
+++.+.
T Consensus 152 e~~qv~ 157 (186)
T PRK08287 152 DCVQLQ 157 (186)
T ss_pred EEEEEE
T ss_conf 599999
No 16
>PRK07402 precorrin-6B methylase; Provisional
Probab=99.12 E-value=4.2e-09 Score=81.63 Aligned_cols=133 Identities=22% Similarity=0.314 Sum_probs=102.4
Q ss_pred CCCCCCCCCCCEEEECCCCCCHHHHHHHHHHCCCCEEHHHHCCHHHHHHHHHHHHHCCCCCCEEEECCC--CCCCCCCCC
Q ss_conf 211236666625860134688279999998616881005524989999999998750288608821554--344572324
Q gi|254780634|r 223 VSNLTAITNSSQILDFCAGGGGKTLALSMLLNNKGQIHAWDNNKSRMAPIVARIKRAGIHNVQLHSSWE--SLRNLQEHF 300 (429)
Q Consensus 223 ~~~~l~~~~g~~vLD~CAapGGKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~~~--~~~~~~~~f 300 (429)
....|+++||+.+||.-||.|.=|...|-+ ...|+|+|+|.++.++..+++|++|.|+.|+++...++ .+..+...+
T Consensus 32 ~l~kL~l~~~~~vwDIGaGtGsVsiEaa~~-~~~g~V~AIE~~~~a~~li~~N~~rfgv~nv~ii~g~ape~L~~l~p~p 110 (196)
T PRK07402 32 LISQLRLEPDSVLWDIGAGTGTIPVEAALL-CPKGRVIAIERDEEVANLIRRNCDRFGVKNVEVIEGSAPECLAQLAPAP 110 (196)
T ss_pred HHHHHCCCCCCEEEEECCCCCHHHHHHHHH-CCCCEEEEEECCHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHCCCCC
T ss_conf 999708999999999478877999999987-8998899997688899999998997299987999726366684089999
Q ss_pred CEEEECCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHCHHHHHHHHHHCC--
Q ss_conf 678962754450444442236672496789999998789999999960898389997758882429998999998579--
Q gi|254780634|r 301 TTVLVDAPCSGTGTWRRRPDIKWRLSQKNLIERTEEQKKILEESAQFVRPEGYLVYITCSILPEENIQQINYFLSKNP-- 378 (429)
Q Consensus 301 d~vl~DaPCSg~G~~rr~Pe~~w~~~~~~~~~~~~lQ~~iL~~a~~~lk~gG~lvYsTCS~~~~Ene~vv~~fL~~~~-- 378 (429)
|+|++- |.|- + .+||+.++..|+|||++|-.+-|+ ||-..+..+|++..
T Consensus 111 D~vFIG----Gg~~---------------l-------~~il~~~~~~L~pgGriVinaitL---etl~~~~~~l~~~~~~ 161 (196)
T PRK07402 111 DRICIE----GGRP---------------I-------KEILQAVWQYLKPGGRLVATASSL---EGLYAISEGLAQLQAR 161 (196)
T ss_pred CEEEEC----CCCC---------------H-------HHHHHHHHHHCCCCCEEEEEEEEH---HHHHHHHHHHHHCCCC
T ss_conf 999984----8968---------------8-------999999998679998999985709---8899999999973887
Q ss_pred CCEEEEC
Q ss_conf 9799414
Q gi|254780634|r 379 HFSIDSI 385 (429)
Q Consensus 379 ~~~~~~~ 385 (429)
+++++.+
T Consensus 162 ~~e~~qv 168 (196)
T PRK07402 162 NVEVVQA 168 (196)
T ss_pred CEEEEEE
T ss_conf 6379999
No 17
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=99.08 E-value=8e-10 Score=86.53 Aligned_cols=116 Identities=24% Similarity=0.371 Sum_probs=90.6
Q ss_pred CCCCCCCCCCCEEEECCCCCCHHHHHHHHHHCCCCEEHHHHCCHHHHHHHHHHHHHCCC-CCCEEEECCC-CCCCCCCCC
Q ss_conf 21123666662586013468827999999861688100552498999999999875028-8608821554-344572324
Q gi|254780634|r 223 VSNLTAITNSSQILDFCAGGGGKTLALSMLLNNKGQIHAWDNNKSRMAPIVARIKRAGI-HNVQLHSSWE-SLRNLQEHF 300 (429)
Q Consensus 223 ~~~~l~~~~g~~vLD~CAapGGKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~-~~v~~~~~~~-~~~~~~~~f 300 (429)
.+..++++||++|||+|||.|-=+..++......+.|+++|+++.=++..++++...+. .|++....+. .++...+.|
T Consensus 43 ~v~~l~~~~g~~vLDvgcGTG~~~~~l~~~~~~~~~v~g~D~S~~ML~~A~~k~~~~~~~~~i~~~~~da~~lpf~d~sf 122 (239)
T PRK00216 43 TIKWLGVRPGDKVLDLACGTGDLAIALAKAVGETGEVVGLDFSEGMLAVGREKLLDKGLSGNVEFVQGDAEALPFPDNSF 122 (239)
T ss_pred HHHHCCCCCCCEEEEECCCCCHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCC
T ss_conf 99862789999898845776387999999729976799991988999999999997389888507982355688876667
Q ss_pred CEEEECCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECC
Q ss_conf 678962754450444442236672496789999998789999999960898389997758
Q gi|254780634|r 301 TTVLVDAPCSGTGTWRRRPDIKWRLSQKNLIERTEEQKKILEESAQFVRPEGYLVYITCS 360 (429)
Q Consensus 301 d~vl~DaPCSg~G~~rr~Pe~~w~~~~~~~~~~~~lQ~~iL~~a~~~lk~gG~lvYsTCS 360 (429)
|.|. ++-|. |.-||. .+.|.+..+.|||||+++=.-=|
T Consensus 123 D~v~-----~~f~l-~~~~d~----------------~~~l~E~~RVLkPGG~l~ilefs 160 (239)
T PRK00216 123 DAVT-----IAFGL-RNVPDI----------------DKALREMYRVLKPGGRLVILEFS 160 (239)
T ss_pred CCCC-----CCCEE-EECCCH----------------HHHHHHHHHHCCCCEEEEEEECC
T ss_conf 6500-----26156-714867----------------99999999876648089999758
No 18
>pfam08704 GCD14 tRNA methyltransferase complex GCD14 subunit. GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA.
Probab=99.07 E-value=1.4e-09 Score=84.90 Aligned_cols=120 Identities=14% Similarity=0.306 Sum_probs=97.3
Q ss_pred CCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHCCCCEEHHHHCCHHHHHHHHHHHHHCCCC-CCEEEECCCCC----CCC
Q ss_conf 4211236666625860134688279999998616881005524989999999998750288-60882155434----457
Q gi|254780634|r 222 IVSNLTAITNSSQILDFCAGGGGKTLALSMLLNNKGQIHAWDNNKSRMAPIVARIKRAGIH-NVQLHSSWESL----RNL 296 (429)
Q Consensus 222 l~~~~l~~~~g~~vLD~CAapGGKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~-~v~~~~~~~~~----~~~ 296 (429)
+++..++..||.+|+++-.|.|+=|..||...+.+|+|+..|.++.|.+..++|+++.|+. ||.+...|... ...
T Consensus 93 ~I~~~ldi~PG~~VlEaGtGSGsLT~~Laravgp~G~v~t~E~~e~r~~~A~~n~~~~g~~~~v~~~~rDv~~~gf~~~~ 172 (309)
T pfam08704 93 LIIMMLELKPGSVVCESGTGSGSLSHAIARTVAPTGHLYTFEFHEQRADKAREEFREHGLDSLVTVTHRDVCKSGFDTEV 172 (309)
T ss_pred HHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHCCCCCCEEEEECCHHCCCCCCCC
T ss_conf 99998098999999983678429999999974888659998447899999999998749875058898520013666445
Q ss_pred CCCCCEEEECCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHC-CCCEEE-EEECCCCHHHCHHHHHHHH
Q ss_conf 23246789627544504444422366724967899999987899999999608-983899-9775888242999899999
Q gi|254780634|r 297 QEHFTTVLVDAPCSGTGTWRRRPDIKWRLSQKNLIERTEEQKKILEESAQFVR-PEGYLV-YITCSILPEENIQQINYFL 374 (429)
Q Consensus 297 ~~~fd~vl~DaPCSg~G~~rr~Pe~~w~~~~~~~~~~~~lQ~~iL~~a~~~lk-~gG~lv-YsTCS~~~~Ene~vv~~fL 374 (429)
.+.+|+|+||-|- .| .-+.++.+.|| |||.|+ ||.|. +||+..+
T Consensus 173 ~~~~D~VfLDlp~------------PW---------------~ai~~~~~~Lk~~Gg~l~~f~P~i-------eQv~r~~ 218 (309)
T pfam08704 173 SNKADAVFLDLPA------------PW---------------EAIPHAAKALKVEGGRLCSFSPCI-------EQVQRTC 218 (309)
T ss_pred CCCCCEEEECCCC------------HH---------------HHHHHHHHHHCCCCCEEEEECCCH-------HHHHHHH
T ss_conf 6643589975899------------79---------------988999986068996899991989-------9999999
Q ss_pred H
Q ss_conf 8
Q gi|254780634|r 375 S 375 (429)
Q Consensus 375 ~ 375 (429)
+
T Consensus 219 ~ 219 (309)
T pfam08704 219 L 219 (309)
T ss_pred H
T ss_conf 9
No 19
>pfam01209 Ubie_methyltran ubiE/COQ5 methyltransferase family.
Probab=99.06 E-value=1.2e-09 Score=85.24 Aligned_cols=127 Identities=22% Similarity=0.315 Sum_probs=96.0
Q ss_pred CCCCCCCCCCCEEEECCCCCCHHHHHHHHHHCCCCEEHHHHCCHHHHHHHHHHHHHCCCCCCEEEECCCC-CCCCCCCCC
Q ss_conf 2112366666258601346882799999986168810055249899999999987502886088215543-445723246
Q gi|254780634|r 223 VSNLTAITNSSQILDFCAGGGGKTLALSMLLNNKGQIHAWDNNKSRMAPIVARIKRAGIHNVQLHSSWES-LRNLQEHFT 301 (429)
Q Consensus 223 ~~~~l~~~~g~~vLD~CAapGGKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~~~~-~~~~~~~fd 301 (429)
++..+++++|++|||+|||.|-=|..++......+.|+++|+++.=++..++++++.+..|++....+.. ++...++||
T Consensus 39 ~v~~~~~~~g~~vLDl~cGTG~~~~~l~~~~~~~~~v~gvD~S~~ML~~a~~k~~~~~~~~i~~~~~da~~lpf~d~sfD 118 (233)
T pfam01209 39 TMKCMGVKRGNKFLDVAGGTGDWTFGLSDSAGSSGKVVGLDINENMLKEGEKKAKEEGKYNIEFLQGNAEELPFEDDSFD 118 (233)
T ss_pred HHHHCCCCCCCEEEEECCCCCHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCC
T ss_conf 99861899999899825405889999999849997499996999999999999985699983699821666886665657
Q ss_pred EEEECCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHCHHHHHHHH
Q ss_conf 7896275445044444223667249678999999878999999996089838999775888242999899999
Q gi|254780634|r 302 TVLVDAPCSGTGTWRRRPDIKWRLSQKNLIERTEEQKKILEESAQFVRPEGYLVYITCSILPEENIQQINYFL 374 (429)
Q Consensus 302 ~vl~DaPCSg~G~~rr~Pe~~w~~~~~~~~~~~~lQ~~iL~~a~~~lk~gG~lvYsTCS~~~~Ene~vv~~fL 374 (429)
.|.+ +-|. |.-|| ..+.|.+..+.|||||+++=-- +.+-+|. .+..|-
T Consensus 119 ~v~~-----~fgl-rn~~d----------------~~~al~E~~RVLKPGG~l~ile--fs~P~~~-~~~~~~ 166 (233)
T pfam01209 119 IVTI-----SFGL-RNFPD----------------YLKVLKEAFRVLKPGGRVVCLE--FSKPENP-LLSQAY 166 (233)
T ss_pred HHHH-----HHHH-HCCCC----------------HHHHHHHHHHHCCCCCEEEEEE--CCCCCCH-HHHHHH
T ss_conf 3142-----1012-12588----------------8999999998727897899997--8888777-999999
No 20
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=99.03 E-value=1.2e-08 Score=78.65 Aligned_cols=159 Identities=19% Similarity=0.248 Sum_probs=110.6
Q ss_pred CCCCCCCEEEECCCCCCHHHHHHHHHHCCCCEEHHHHCCHHHHHHHHHHHHHCCCCC-CEEEECCCCCCCCCCCCCEEEE
Q ss_conf 366666258601346882799999986168810055249899999999987502886-0882155434457232467896
Q gi|254780634|r 227 TAITNSSQILDFCAGGGGKTLALSMLLNNKGQIHAWDNNKSRMAPIVARIKRAGIHN-VQLHSSWESLRNLQEHFTTVLV 305 (429)
Q Consensus 227 l~~~~g~~vLD~CAapGGKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~-v~~~~~~~~~~~~~~~fd~vl~ 305 (429)
.......+|||+|+|.|-=++.+|.... ...|+|+|+|+.=++..++|++++|+.+ +.+...|....-...+||.|+.
T Consensus 117 ~~~~~~~~iLDlGtGSG~Iai~la~~~p-~~~v~a~DiS~~Al~~A~~N~~~~~l~~rv~~~~~D~~~~~~~~~fDlIVS 195 (284)
T TIGR03533 117 LEPEPVKRILDLCTGSGCIAIACAYAFP-EAEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFAALPGRKYDLIVS 195 (284)
T ss_pred HCCCCCCEEEEECCCCHHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHHCCCCCEEEEECCHHHHCCCCCCCEEEE
T ss_conf 4236777155521680799999998789-987999989999999999999860854336888351433145777787997
Q ss_pred CCCCCCCHHHHHH-HHHHHHCCHHHH----HHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHCHHHHHHHHHHCCCC
Q ss_conf 2754450444442-236672496789----99999878999999996089838999775888242999899999857997
Q gi|254780634|r 306 DAPCSGTGTWRRR-PDIKWRLSQKNL----IERTEEQKKILEESAQFVRPEGYLVYITCSILPEENIQQINYFLSKNPHF 380 (429)
Q Consensus 306 DaPCSg~G~~rr~-Pe~~w~~~~~~~----~~~~~lQ~~iL~~a~~~lk~gG~lvYsTCS~~~~Ene~vv~~fL~~~~~~ 380 (429)
-.|-=.+..+..- ||+++ -|..- ..=-..-+.|+.+|.++|+|||.|+. |=+++| +.+.+..|+
T Consensus 196 NPPYI~~~e~~~l~~ev~~--EP~~AL~gG~dGL~~yr~Ii~~a~~~L~pgG~l~l-------EiG~~Q-~~~~~~~~~- 264 (284)
T TIGR03533 196 NPPYVDAEDMADLPAEYHH--EPELALASGEDGLDLVRRILAEAADHLNENGVLVV-------EVGNSM-EALEEAYPD- 264 (284)
T ss_pred CCCCCCHHHHHHCCHHHCC--CCHHHHCCCCCHHHHHHHHHHHHHHHCCCCCEEEE-------EECCCH-HHHHHHCCC-
T ss_conf 7997884655449764115--86998758955879999999988984256978999-------979788-999986689-
Q ss_pred EEEECCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCEEEE
Q ss_conf 994143002223455555555676984998044798621589
Q gi|254780634|r 381 SIDSIIDDWNQLYDLKNHPSLFIENGCCVLTPFLTNTDGFFF 422 (429)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~dGff~ 422 (429)
-.+.++|...|+||-|+
T Consensus 265 -------------------------~~~~~~~~~~~~~~~~~ 281 (284)
T TIGR03533 265 -------------------------VPFTWLEFENGGDGVFL 281 (284)
T ss_pred -------------------------CCCEEEEECCCCCEEEE
T ss_conf -------------------------99647741589836999
No 21
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit; InterPro: IPR014008 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase . In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase . There are at least two distinct cobalamin biosynthetic pathways in bacteria : Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway ; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis ; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) . There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CbiT subunit of precorrin-6Y C5,15-methyltransferase (2.1.1.132 from EC) from the anaerobic pathway, a bifunctional enzyme that catalyses two methylations (at C-5 and C-15) in precorrin-6Y, as well as the decarboxylation of the acetate side chain located in ring C, in order to generate precorrin-8X. In the anaerobic pathway, two enzymes are required to produce precorrin-8X: CbiE and CbiT, which can be fused as CbiET (sometimes called CobL) . In the aerobic pathway, the bifunctional enzyme is CobL .; GO: 0008276 protein methyltransferase activity, 0009236 cobalamin biosynthetic process.
Probab=99.02 E-value=3.2e-09 Score=82.43 Aligned_cols=108 Identities=23% Similarity=0.331 Sum_probs=91.4
Q ss_pred CCCCCCCCCC-EEEECCCCCCHHHHHHHHHHCCCCEEHHHHCCHHHHHHHHHHHHHC-CCCCCEEEECCCC------C-C
Q ss_conf 1123666662-5860134688279999998616881005524989999999998750-2886088215543------4-4
Q gi|254780634|r 224 SNLTAITNSS-QILDFCAGGGGKTLALSMLLNNKGQIHAWDNNKSRMAPIVARIKRA-GIHNVQLHSSWES------L-R 294 (429)
Q Consensus 224 ~~~l~~~~g~-~vLD~CAapGGKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~-g~~~v~~~~~~~~------~-~ 294 (429)
-..|.++|++ ++||.-||-|+=|.-++-++++.|+|+|.|.++.++..+++|++|+ ++.|+.+...+.. . +
T Consensus 12 L~~L~l~~~~~v~wDIGaGtGS~~iE~~~~~p~~g~v~aiEr~~~~~~~~~~N~~~~c~~~~~~i~~g~ap~~~~~~~~~ 91 (135)
T TIGR02469 12 LAKLRLRPGDSVLWDIGAGTGSVTIEAARLVPNSGRVYAIERNPEALRLIERNLRRFCGVSNIVIVEGDAPEELLNSDAP 91 (135)
T ss_pred HHHHCCCCCCCEEEEECCCCCHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCC
T ss_conf 98717899994688960574838999997359860799985376898799999998289996325635568433367777
Q ss_pred CC---CCCCCEEEECCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEE
Q ss_conf 57---232467896275445044444223667249678999999878999999996089838999
Q gi|254780634|r 295 NL---QEHFTTVLVDAPCSGTGTWRRRPDIKWRLSQKNLIERTEEQKKILEESAQFVRPEGYLVY 356 (429)
Q Consensus 295 ~~---~~~fd~vl~DaPCSg~G~~rr~Pe~~w~~~~~~~~~~~~lQ~~iL~~a~~~lk~gG~lvY 356 (429)
.. -..||+|++- |+|. .+| +||+.+++.|+|||+||=
T Consensus 92 ~~~~~~~~~Da~fvG----Gs~~--------------------~~~-~il~~~~~~l~~GGr~v~ 131 (135)
T TIGR02469 92 EDSAKLPEPDAVFVG----GSGG--------------------KLE-EILEAVERRLRPGGRIVL 131 (135)
T ss_pred HHHCCCCCCCEEEEC----CCCH--------------------HHH-HHHHHHHHCCCCCCEEEE
T ss_conf 100588746888883----8971--------------------789-999999850596888888
No 22
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=99.02 E-value=6.4e-09 Score=80.38 Aligned_cols=136 Identities=15% Similarity=0.279 Sum_probs=106.6
Q ss_pred CCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHCCCCEEHHHHCCHHHHHHHHHHHHHCCC-CCCEEEECCCC--CCCCCC
Q ss_conf 421123666662586013468827999999861688100552498999999999875028-86088215543--445723
Q gi|254780634|r 222 IVSNLTAITNSSQILDFCAGGGGKTLALSMLLNNKGQIHAWDNNKSRMAPIVARIKRAGI-HNVQLHSSWES--LRNLQE 298 (429)
Q Consensus 222 l~~~~l~~~~g~~vLD~CAapGGKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~-~~v~~~~~~~~--~~~~~~ 298 (429)
+....|++.+|+.+||.-||-|.=|..+|-++...|+|+|+|.++.++..+++|++|.|+ .|+.+...++. +..+..
T Consensus 31 ~~l~~L~l~~~~~vwDIGaGsGsvsiEaa~~~~~~~~V~aIE~~~e~~~~~~~N~~kfg~~~nv~~i~G~ap~~l~~l~p 110 (198)
T PRK00377 31 LALSKLRLFKGGKLVDVGCGTGSVSVEAALIVGEGGKVYAIDKDELAVELTKKNAEKFGVGDNVVLIEGEAPEVLPKLNP 110 (198)
T ss_pred HHHHHHCCCCCCEEEEECCCEEHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCCEEEEECCHHHHHHCCCC
T ss_conf 99997099998999991770329999999966978759999678889999999999809998859995254887720899
Q ss_pred CCCEEEECCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHCHHHHHHHHHHCC
Q ss_conf 24678962754450444442236672496789999998789999999960898389997758882429998999998579
Q gi|254780634|r 299 HFTTVLVDAPCSGTGTWRRRPDIKWRLSQKNLIERTEEQKKILEESAQFVRPEGYLVYITCSILPEENIQQINYFLSKNP 378 (429)
Q Consensus 299 ~fd~vl~DaPCSg~G~~rr~Pe~~w~~~~~~~~~~~~lQ~~iL~~a~~~lk~gG~lvYsTCS~~~~Ene~vv~~fL~~~~ 378 (429)
.||+|+++ |.|- .+ .+||+.+++.|+|||+||-..-|+ |+....-.+|++..
T Consensus 111 ~pD~vFIG----G~~g--------------~l-------~~il~~~~~~L~~gGriVinaVtl---et~~~~~~~l~~~~ 162 (198)
T PRK00377 111 KSDRYFIG----GGGE--------------EL-------PEIIQAALEKIGKGGRIVADAILL---ESLNKALSALEELG 162 (198)
T ss_pred CCCEEEEE----CCCC--------------CH-------HHHHHHHHHHCCCCCEEEEEEECH---HHHHHHHHHHHHCC
T ss_conf 88989997----8877--------------78-------999999998579998999983629---88999999999769
Q ss_pred -CCEEEEC
Q ss_conf -9799414
Q gi|254780634|r 379 -HFSIDSI 385 (429)
Q Consensus 379 -~~~~~~~ 385 (429)
+++++.+
T Consensus 163 ~~~ev~qv 170 (198)
T PRK00377 163 YKYEVTEV 170 (198)
T ss_pred CCCEEEEE
T ss_conf 98149999
No 23
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=99.02 E-value=1.5e-08 Score=77.84 Aligned_cols=149 Identities=18% Similarity=0.236 Sum_probs=106.4
Q ss_pred CCCCCCCCCCCEEEECCCCCCHHHHHHHHHHCCCCEEHHHHCCHHHHHHHHHHHHHCCCCCCEEEECCCC--CCCCCCCC
Q ss_conf 2112366666258601346882799999986168810055249899999999987502886088215543--44572324
Q gi|254780634|r 223 VSNLTAITNSSQILDFCAGGGGKTLALSMLLNNKGQIHAWDNNKSRMAPIVARIKRAGIHNVQLHSSWES--LRNLQEHF 300 (429)
Q Consensus 223 ~~~~l~~~~g~~vLD~CAapGGKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~~~~--~~~~~~~f 300 (429)
+..+++..++++|||++||-|+=|+.||.. ..+|+++|+++.=++.+++|+++.|+.|+++...|.. .....+.+
T Consensus 225 ~~~~~~~~~~~~vlDlycG~G~~sl~lA~~---~~~V~gvE~~~~av~~A~~na~~ngi~nv~f~~~d~~~~~~~~~~~~ 301 (375)
T PRK03522 225 ARDWVRELPPKSMWDLFCGVGGFGLHCATP---DMQLTGIEISAEAIACAKQSAAELGLTNVQFQALDSTQFATAQGEVP 301 (375)
T ss_pred HHHHHHCCCCCEEEEECCCCCHHHHHHHHC---CCEEEEEEECHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHCCCCC
T ss_conf 999863158978999657853888987641---78899998459999999999998699876999737788876345689
Q ss_pred CEEEECCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHCHHHHHHHHHHCCCC
Q ss_conf 67896275445044444223667249678999999878999999996089838999775888242999899999857997
Q gi|254780634|r 301 TTVLVDAPCSGTGTWRRRPDIKWRLSQKNLIERTEEQKKILEESAQFVRPEGYLVYITCSILPEENIQQINYFLSKNPHF 380 (429)
Q Consensus 301 d~vl~DaPCSg~G~~rr~Pe~~w~~~~~~~~~~~~lQ~~iL~~a~~~lk~gG~lvYsTCS~~~~Ene~vv~~fL~~~~~~ 380 (429)
|.|++|.|=||.+- +-++.+.. ++| .++||.-|....-- +=|+.-.+|
T Consensus 302 d~vvvDPPR~Gl~~-------------~~~~~l~~------------~~p-~~IvYVSCnP~Tla------RDl~~L~gy 349 (375)
T PRK03522 302 ELVLVNPPRRGIGK-------------PLCDYLSQ------------MAP-RFILYSSCNAQTMA------KDLAHLPGY 349 (375)
T ss_pred CEEEECCCCCCCHH-------------HHHHHHHH------------CCC-CEEEEEECCHHHHH------HHHHHHCCC
T ss_conf 78998999777519-------------99999986------------599-96999907989999------998884397
Q ss_pred EEEECCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCEEEEEEEEEC
Q ss_conf 994143002223455555555676984998044798621589999626
Q gi|254780634|r 381 SIDSIIDDWNQLYDLKNHPSLFIENGCCVLTPFLTNTDGFFFCRLKRH 428 (429)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~dGff~a~l~k~ 428 (429)
++..+. .+=++||.+..+ =+|+|+||
T Consensus 350 ~l~~v~--------------------~~DmFPqT~HvE--~v~lL~Rk 375 (375)
T PRK03522 350 RIERVQ--------------------LFDMFPHTAHYE--VLTLLVRQ 375 (375)
T ss_pred EEEEEE--------------------EECCCCCCCCEE--EEEEEEEC
T ss_conf 688999--------------------953698997189--99999959
No 24
>pfam02475 Met_10 Met-10+ like-protein. The methionine-10 mutant allele of N. crassa codes for a protein of unknown function. However, homologous proteins have been found in yeast suggesting this protein may be involved in methionine biosynthesis, transport and/or utilisation.
Probab=98.98 E-value=3.6e-09 Score=82.10 Aligned_cols=101 Identities=16% Similarity=0.210 Sum_probs=82.1
Q ss_pred CCCCCEEEECCCCCCHHHHHHHHHHCCCCEEHHHHCCHHHHHHHHHHHHHCCCCC-CEEEECCCCCCCCCCCCCEEEECC
Q ss_conf 6666258601346882799999986168810055249899999999987502886-088215543445723246789627
Q gi|254780634|r 229 ITNSSQILDFCAGGGGKTLALSMLLNNKGQIHAWDNNKSRMAPIVARIKRAGIHN-VQLHSSWESLRNLQEHFTTVLVDA 307 (429)
Q Consensus 229 ~~~g~~vLD~CAapGGKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~-v~~~~~~~~~~~~~~~fd~vl~Da 307 (429)
.++|+.|+|++||-|+=++.+|.. ....+|+|+|+++.-++.+++|++..++.+ +.....|....-..++||+|+++-
T Consensus 98 ~~~ge~VlD~faGvG~f~l~~ak~-~~~~~V~a~DlNp~a~~~l~~N~~lN~v~~~i~~~~gD~~~~~~~~~~Drvimnl 176 (199)
T pfam02475 98 VKEGEVVVDMFAGIGPFSIPIAKH-SKAKRVYAVELNPEAVKYLKENIKLNKVEGVISPILGDVRDVILEGVADRVIMNL 176 (199)
T ss_pred CCCCCEEEECCCCCCHHHHHHHHC-CCCCEEEEEECCHHHHHHHHHHHHHHCCCCCEEEEECCHHHHCCCCCCCEEEECC
T ss_conf 489988998168865778998640-7864899982899999999999998099983699928787860467400999489
Q ss_pred CCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEE
Q ss_conf 5445044444223667249678999999878999999996089838999
Q gi|254780634|r 308 PCSGTGTWRRRPDIKWRLSQKNLIERTEEQKKILEESAQFVRPEGYLVY 356 (429)
Q Consensus 308 PCSg~G~~rr~Pe~~w~~~~~~~~~~~~lQ~~iL~~a~~~lk~gG~lvY 356 (429)
|=+. .+-|.+|..++|+||.+=|
T Consensus 177 P~~a--------------------------~~fL~~A~~~lk~gg~iHy 199 (199)
T pfam02475 177 PKSA--------------------------HEFLDKALRAVKDGGVIHY 199 (199)
T ss_pred CCCH--------------------------HHHHHHHHHHHCCCCEEEC
T ss_conf 7316--------------------------9999999998558989839
No 25
>pfam01135 PCMT Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT).
Probab=98.98 E-value=5.8e-09 Score=80.69 Aligned_cols=109 Identities=14% Similarity=0.195 Sum_probs=89.9
Q ss_pred CCCCCCCCCCCEEEECCCCCCHHHHHHHHHHCCCCEEHHHHCCHHHHHHHHHHHHHCCCCCCEEEECCCCCC-CCCCCCC
Q ss_conf 211236666625860134688279999998616881005524989999999998750288608821554344-5723246
Q gi|254780634|r 223 VSNLTAITNSSQILDFCAGGGGKTLALSMLLNNKGQIHAWDNNKSRMAPIVARIKRAGIHNVQLHSSWESLR-NLQEHFT 301 (429)
Q Consensus 223 ~~~~l~~~~g~~vLD~CAapGGKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~~~~~~-~~~~~fd 301 (429)
...+|+++||++|||..+|-|==|..||.+.+..|+|++.|+++.-++..++|++++|+.||.+...+.... +..+.||
T Consensus 65 ml~~L~l~~g~~VLeIGtGsGY~tAlLa~l~~~~g~V~~iE~~~~l~~~A~~~l~~~~~~nV~~~~gdg~~g~~~~apfD 144 (205)
T pfam01135 65 MLELLELKPGMRVLEIGSGSGYLTACFARMVGEVGRVVSIEHIPELVEIARRNLEKLGLENVIVVVGDGRQGWPEFAPYD 144 (205)
T ss_pred HHHHCCCCCCCEEEEECCCCCHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCC
T ss_conf 99970789999899966996599999999838787699983589999999999998488865898456455883339805
Q ss_pred EEEECCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEC
Q ss_conf 7896275445044444223667249678999999878999999996089838999775
Q gi|254780634|r 302 TVLVDAPCSGTGTWRRRPDIKWRLSQKNLIERTEEQKKILEESAQFVRPEGYLVYITC 359 (429)
Q Consensus 302 ~vl~DaPCSg~G~~rr~Pe~~w~~~~~~~~~~~~lQ~~iL~~a~~~lk~gG~lvYsTC 359 (429)
+|++.+-|.- -|+ . -.+.|++||+||--..
T Consensus 145 ~Iiv~aa~~~------iP~--------~--------------l~~qL~~gGrLv~pvg 174 (205)
T pfam01135 145 AIHVGAAAPE------IPE--------A--------------LIDQLKEGGRLVIPVG 174 (205)
T ss_pred EEEEEEECCC------CCH--------H--------------HHHHCCCCCEEEEEEC
T ss_conf 8999750676------889--------9--------------9996287978999987
No 26
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=98.97 E-value=1.1e-08 Score=78.69 Aligned_cols=160 Identities=16% Similarity=0.250 Sum_probs=115.3
Q ss_pred HHCCCEEEEECCCCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHCCCCEEHHHHCCHHHHHHHHHHHHHCCCCC--C
Q ss_conf 31265489841556542112366666258601346882799999986168810055249899999999987502886--0
Q gi|254780634|r 207 TFQRGWFEIQDEGSQIVSNLTAITNSSQILDFCAGGGGKTLALSMLLNNKGQIHAWDNNKSRMAPIVARIKRAGIHN--V 284 (429)
Q Consensus 207 ~f~~G~~~VQD~aSql~~~~l~~~~g~~vLD~CAapGGKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~--v 284 (429)
.-+-|+|.=|=.+=..+...+. |.+|||+||=-||=|.|- .+++...++++|.|.+=++..++|++-.|+.- +
T Consensus 196 g~kTGfFlDqR~~R~~l~~~~~---GkrvLNlFsYTGgfsv~A--a~gGA~~vt~VD~S~~al~~a~~N~~LNg~~~~~~ 270 (393)
T COG1092 196 GLKTGFFLDQRDNRRALGELAA---GKRVLNLFSYTGGFSVHA--ALGGASEVTSVDLSKRALEWARENAELNGLDGDRH 270 (393)
T ss_pred CCCCEEEHHHHHHHHHHHHHCC---CCEEEEECCCCCHHHHHH--HHCCCCCEEEEECCHHHHHHHHHHHHHCCCCCCCE
T ss_conf 4200452876799999861316---876788646676999999--86699714898265789999999998629971010
Q ss_pred EEEECCCC--CCC---CCCCCCEEEECCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEC
Q ss_conf 88215543--445---7232467896275445044444223667249678999999878999999996089838999775
Q gi|254780634|r 285 QLHSSWES--LRN---LQEHFTTVLVDAPCSGTGTWRRRPDIKWRLSQKNLIERTEEQKKILEESAQFVRPEGYLVYITC 359 (429)
Q Consensus 285 ~~~~~~~~--~~~---~~~~fd~vl~DaPCSg~G~~rr~Pe~~w~~~~~~~~~~~~lQ~~iL~~a~~~lk~gG~lvYsTC 359 (429)
.+...|.. +.. -..+||.|++|+| ++.|++...|+ ...-=..|+..+.++|+|||+++-|||
T Consensus 271 ~~i~~Dvf~~l~~~~~~g~~fDlIilDPP-----sF~r~k~~~~~--------~~rdy~~l~~~~~~lL~pgG~l~~~s~ 337 (393)
T COG1092 271 RFIVGDVFKWLRKAERRGEKFDLIILDPP-----SFARSKKQEFS--------AQRDYKDLNDLALRLLAPGGTLVTSSC 337 (393)
T ss_pred EEEHHHHHHHHHHHHHCCCCCCEEEECCC-----CCCCCCCCCHH--------HHHHHHHHHHHHHHHCCCCCEEEEEEC
T ss_conf 56722399999999855995568997881-----00358210053--------898999999999997079968999936
Q ss_pred CCCHHHCH---HHHHHHHHHCCCCEEEE
Q ss_conf 88824299---98999998579979941
Q gi|254780634|r 360 SILPEENI---QQINYFLSKNPHFSIDS 384 (429)
Q Consensus 360 S~~~~Ene---~vv~~fL~~~~~~~~~~ 384 (429)
|-.-...+ .+.+.+.......+...
T Consensus 338 ~~~~~~~~f~~~i~~a~~~~~~~~~~~~ 365 (393)
T COG1092 338 SRHFSSDLFLEIIARAAAAAGRRAQEIE 365 (393)
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCEEEEE
T ss_conf 7766989999999999986487579961
No 27
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=98.94 E-value=2e-08 Score=77.05 Aligned_cols=129 Identities=19% Similarity=0.278 Sum_probs=97.0
Q ss_pred CCCCCCEEEECCCCCCHHHHHHHHHHCCCCEEHHHHCCHHHHHHHHHHHHHCCCCC-CEEEECCCCCCCCCCCCCEEEEC
Q ss_conf 66666258601346882799999986168810055249899999999987502886-08821554344572324678962
Q gi|254780634|r 228 AITNSSQILDFCAGGGGKTLALSMLLNNKGQIHAWDNNKSRMAPIVARIKRAGIHN-VQLHSSWESLRNLQEHFTTVLVD 306 (429)
Q Consensus 228 ~~~~g~~vLD~CAapGGKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~-v~~~~~~~~~~~~~~~fd~vl~D 306 (429)
......+|||+|+|.|-=.+.+|.... ...|+|+|+|+.=++..++|++|.|+.+ |.+...|....-..++||.|+.-
T Consensus 130 ~~~~~~rilDlGtGSG~Iaisla~~~p-~~~v~a~Dis~~AL~vA~~N~~~~~l~~rv~~~~~D~~~~l~~~~fDlIvSN 208 (307)
T PRK11805 130 EDEQPTRILDLCTGSGCIAIACAYAFP-DAEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFAALPGRRYDLIVSN 208 (307)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHHCCCCCEEEEECCHHHCCCCCCCCEEEEC
T ss_conf 357887277742782799999998789-9889998589999999999999838877389980402212688750779967
Q ss_pred CCCCCCHHHHHH-HHHHHHCCHHHH----HHHHHHHHHHHHHHHHHHCCCCEEEEEEC
Q ss_conf 754450444442-236672496789----99999878999999996089838999775
Q gi|254780634|r 307 APCSGTGTWRRR-PDIKWRLSQKNL----IERTEEQKKILEESAQFVRPEGYLVYITC 359 (429)
Q Consensus 307 aPCSg~G~~rr~-Pe~~w~~~~~~~----~~~~~lQ~~iL~~a~~~lk~gG~lvYsTC 359 (429)
.|-=.+..+..- ||+++ -|..- ..=-..-+.|+.+|.+.|+|||.|+.=.=
T Consensus 209 PPYI~~~~~~~L~~ev~~--EP~~AL~gG~DGLd~~r~i~~~A~~~L~pgG~L~~EiG 264 (307)
T PRK11805 209 PPYVDAEDMADLPAEYRH--EPELALAAGDDGLDLVRRILAEAADYLTEDGVLVCEVG 264 (307)
T ss_pred CCCCCHHHHHHCCHHHCC--CCHHHHCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEEC
T ss_conf 997885656339775315--87888768924889999999988974476968999979
No 28
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=98.94 E-value=6.7e-09 Score=80.26 Aligned_cols=126 Identities=19% Similarity=0.297 Sum_probs=101.0
Q ss_pred HCCCEEEEECCCCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHCCCCEEHHHHCCHHHHHHHHHHHHHCCCCC-CEE
Q ss_conf 1265489841556542112366666258601346882799999986168810055249899999999987502886-088
Q gi|254780634|r 208 FQRGWFEIQDEGSQIVSNLTAITNSSQILDFCAGGGGKTLALSMLLNNKGQIHAWDNNKSRMAPIVARIKRAGIHN-VQL 286 (429)
Q Consensus 208 f~~G~~~VQD~aSql~~~~l~~~~g~~vLD~CAapGGKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~-v~~ 286 (429)
|+.+-=.|--.-|.+++.-++..||++|+|+..|.|-=|..||-..+..|+|+..|+++..++...+|++.+|+.| |.+
T Consensus 71 ~~R~tQiIyPKD~~~I~~~~gi~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~ 150 (256)
T COG2519 71 MKRRTQIIYPKDAGYIVARLGISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVTL 150 (256)
T ss_pred CCCCCCEECCCCHHHHHHHCCCCCCCEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECHHHHHHHHHHHHHHCCCCCEEE
T ss_conf 76787333577799999870999887899815680599999999648884599999527899999999998424561378
Q ss_pred EECCCCCCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCC-EEEEEECC
Q ss_conf 215543445723246789627544504444422366724967899999987899999999608983-89997758
Q gi|254780634|r 287 HSSWESLRNLQEHFTTVLVDAPCSGTGTWRRRPDIKWRLSQKNLIERTEEQKKILEESAQFVRPEG-YLVYITCS 360 (429)
Q Consensus 287 ~~~~~~~~~~~~~fd~vl~DaPCSg~G~~rr~Pe~~w~~~~~~~~~~~~lQ~~iL~~a~~~lk~gG-~lvYsTCS 360 (429)
...|....-....||.|.||-|= -|+ .|+++++.|+||| ..+|+.|.
T Consensus 151 ~~~Dv~~~~~~~~vDav~LDmp~------------PW~---------------~le~~~~~Lkpgg~~~~y~P~v 198 (256)
T COG2519 151 KLGDVREGIDEEDVDAVFLDLPD------------PWN---------------VLEHVSDALKPGGVVVVYSPTV 198 (256)
T ss_pred EECCCCCCCCCCCCCEEEECCCC------------HHH---------------HHHHHHHHHCCCCEEEEECCCH
T ss_conf 70540002465546779975898------------489---------------9999998717996799983978
No 29
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=98.93 E-value=1.1e-08 Score=78.79 Aligned_cols=106 Identities=12% Similarity=0.179 Sum_probs=86.8
Q ss_pred CCCCCCCCCCEEEECCCCCCHHHHHHHHHHCCCCEEHHHHCCHHHHHHHHHHHHHCCCCCCEEEECCCCCC-CCCCCCCE
Q ss_conf 11236666625860134688279999998616881005524989999999998750288608821554344-57232467
Q gi|254780634|r 224 SNLTAITNSSQILDFCAGGGGKTLALSMLLNNKGQIHAWDNNKSRMAPIVARIKRAGIHNVQLHSSWESLR-NLQEHFTT 302 (429)
Q Consensus 224 ~~~l~~~~g~~vLD~CAapGGKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~~~~~~-~~~~~fd~ 302 (429)
.++++++||++||+..+|.|=-|..||++.+.+|.|+++|+++.=....+++++++|++||.+..+|.... +....||+
T Consensus 68 lElL~l~pg~rVLEIGTGSGYqAAlLA~Lvg~~G~V~TIE~~~~L~~~Ar~~L~~lG~~NV~vv~GDG~~G~pe~APYD~ 147 (317)
T PRK13943 68 MEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENVIFVCGDGYYGVPEFSPYDV 147 (317)
T ss_pred HHHHCCCCCCEEEEECCCCCHHHHHHHHHHCCCCEEEEEEECHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCE
T ss_conf 99717899986899657743899999998487875999986799999999999977998649997998888866799778
Q ss_pred EEECCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 8962754450444442236672496789999998789999999960898389997
Q gi|254780634|r 303 VLVDAPCSGTGTWRRRPDIKWRLSQKNLIERTEEQKKILEESAQFVRPEGYLVYI 357 (429)
Q Consensus 303 vl~DaPCSg~G~~rr~Pe~~w~~~~~~~~~~~~lQ~~iL~~a~~~lk~gG~lvYs 357 (429)
|++-|-..-. |.. -.+.|||||+||--
T Consensus 148 IIVTAaa~~I--------------P~a--------------LldQLk~GGRLViP 174 (317)
T PRK13943 148 IFVTVGVDEV--------------PET--------------WFTQLKEGGRVIVP 174 (317)
T ss_pred EEEEECCCCC--------------CHH--------------HHHHCCCCCEEEEE
T ss_conf 9998527648--------------999--------------99961859699998
No 30
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=98.91 E-value=1.3e-08 Score=78.24 Aligned_cols=109 Identities=13% Similarity=0.228 Sum_probs=90.1
Q ss_pred CCCCCCCCCCCEEEECCCCCCHHHHHHHHHHCCCCEEHHHHCCHHHHHHHHHHHHHCCCCCCEEEECCCCCC-CCCCCCC
Q ss_conf 211236666625860134688279999998616881005524989999999998750288608821554344-5723246
Q gi|254780634|r 223 VSNLTAITNSSQILDFCAGGGGKTLALSMLLNNKGQIHAWDNNKSRMAPIVARIKRAGIHNVQLHSSWESLR-NLQEHFT 301 (429)
Q Consensus 223 ~~~~l~~~~g~~vLD~CAapGGKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~~~~~~-~~~~~fd 301 (429)
...+|++++|++|||.-+|.|==|..||.+++..|.|+++|+++.-++..++|+.++|+.|+.+...+.... +..+.||
T Consensus 68 ml~~L~l~~~~~VLeIGtGsGY~tAlla~lvg~~g~V~siE~~~~l~~~A~~~l~~~~~~nv~~~~gdg~~G~~~~apfD 147 (214)
T PRK13942 68 MCELLDLDEGQKVLEIGTGSGYHAAVVAEIVGKSGKVTTIERIPELAEKAKKNLKKLGYENVEVILGDGTKGYEENAPYD 147 (214)
T ss_pred HHHHHCCCCCCEEEEECCCCCHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCC
T ss_conf 99972799999799967995299999999747678579997179999999999986376875898567566784459812
Q ss_pred EEEECCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEC
Q ss_conf 7896275445044444223667249678999999878999999996089838999775
Q gi|254780634|r 302 TVLVDAPCSGTGTWRRRPDIKWRLSQKNLIERTEEQKKILEESAQFVRPEGYLVYITC 359 (429)
Q Consensus 302 ~vl~DaPCSg~G~~rr~Pe~~w~~~~~~~~~~~~lQ~~iL~~a~~~lk~gG~lvYsTC 359 (429)
+|++.+-+.- -|+ . -.+.|++||+||.-..
T Consensus 148 ~Iiv~aa~~~------iP~--------~--------------l~~qL~~gGrLV~Pvg 177 (214)
T PRK13942 148 RIYVTAAGPD------IPK--------P--------------LLEQLKDGGIMVIPVG 177 (214)
T ss_pred EEEEEECCCC------CCH--------H--------------HHHHCCCCCEEEEEEC
T ss_conf 7999851765------789--------9--------------9996288958999988
No 31
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=98.90 E-value=1.1e-08 Score=78.72 Aligned_cols=102 Identities=22% Similarity=0.299 Sum_probs=81.4
Q ss_pred EEEECCCCCCHHHHHHHHHHCCCCEEHHHHCCHHHHHHHHHHHHHCCCCCCEEEECCCCC-C-CCCCCCCEEEECCCCCC
Q ss_conf 586013468827999999861688100552498999999999875028860882155434-4-57232467896275445
Q gi|254780634|r 234 QILDFCAGGGGKTLALSMLLNNKGQIHAWDNNKSRMAPIVARIKRAGIHNVQLHSSWESL-R-NLQEHFTTVLVDAPCSG 311 (429)
Q Consensus 234 ~vLD~CAapGGKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~~~~~-~-~~~~~fd~vl~DaPCSg 311 (429)
+|||++||+|.-+..+++. ...+++++|+++.-++.++++....+..++.+...+... . ...++||.|+.+.++..
T Consensus 1 rVLDiGcG~G~~~~~l~~~--~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~V~~~~~~~~ 78 (107)
T cd02440 1 RVLDLGCGTGALALALASG--PGARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELPPEADESFDVIISDPPLHH 78 (107)
T ss_pred CEEEEECCCCHHHHHHHHC--CCCEEEEEECCHHHHHHHHHHHHHCCCCCEEEECCCHHHCCHHHCCCEEEEEEECCEEC
T ss_conf 9999988879999999956--89889999898889999999875327886467148867886320575319999175010
Q ss_pred CHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEE
Q ss_conf 04444422366724967899999987899999999608983899977
Q gi|254780634|r 312 TGTWRRRPDIKWRLSQKNLIERTEEQKKILEESAQFVRPEGYLVYIT 358 (429)
Q Consensus 312 ~G~~rr~Pe~~w~~~~~~~~~~~~lQ~~iL~~a~~~lk~gG~lvYsT 358 (429)
. ..-+.++|.+..+.|||||+++.++
T Consensus 79 ~---------------------~~~~~~~l~~~~~~LkpgG~~~is~ 104 (107)
T cd02440 79 L---------------------VEDLARFLEEARRLLKPGGVLVLTL 104 (107)
T ss_pred C---------------------CCCHHHHHHHHHHHCCCCCEEEEEE
T ss_conf 6---------------------5189999999998748581999999
No 32
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=98.89 E-value=7.5e-09 Score=79.91 Aligned_cols=122 Identities=22% Similarity=0.343 Sum_probs=94.3
Q ss_pred CCCCCCCCCCCEEEECCCCCCHHHHHHHHHHCCCCEEHHHHCCHHHHHHHHHHHHHCCCCCCEEEECCC-CCCCCCCCCC
Q ss_conf 211236666625860134688279999998616881005524989999999998750288608821554-3445723246
Q gi|254780634|r 223 VSNLTAITNSSQILDFCAGGGGKTLALSMLLNNKGQIHAWDNNKSRMAPIVARIKRAGIHNVQLHSSWE-SLRNLQEHFT 301 (429)
Q Consensus 223 ~~~~l~~~~g~~vLD~CAapGGKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~~~-~~~~~~~~fd 301 (429)
.+.++.+.+|++|||+|||.|-=|++++...+ +|.|++.|+++.-|...++++...|..+++....++ .++.....||
T Consensus 43 ~i~~~~~~~g~~vLDva~GTGd~a~~~~k~~g-~g~v~~~D~s~~ML~~a~~k~~~~~~~~i~fv~~dAe~LPf~D~sFD 121 (238)
T COG2226 43 LISLLGIKPGDKVLDVACGTGDMALLLAKSVG-TGEVVGLDISESMLEVAREKLKKKGVQNVEFVVGDAENLPFPDNSFD 121 (238)
T ss_pred HHHHHCCCCCCEEEEECCCCCHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHCCCCCCEEEEEECHHHCCCCCCCCC
T ss_conf 99860789998799966873199999999658-84499997999999999987432476632799705654988887658
Q ss_pred EEEECCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHCHHH
Q ss_conf 78962754450444442236672496789999998789999999960898389997758882429998
Q gi|254780634|r 302 TVLVDAPCSGTGTWRRRPDIKWRLSQKNLIERTEEQKKILEESAQFVRPEGYLVYITCSILPEENIQQ 369 (429)
Q Consensus 302 ~vl~DaPCSg~G~~rr~Pe~~w~~~~~~~~~~~~lQ~~iL~~a~~~lk~gG~lvYsTCS~~~~Ene~v 369 (429)
.|.+. .|+ |-=|| -.+.|.++.+.||||| .+.++.+.+-++...
T Consensus 122 ~vt~~---fgl---rnv~d----------------~~~aL~E~~RVlKpgG--~~~vle~~~p~~~~~ 165 (238)
T COG2226 122 AVTIS---FGL---RNVTD----------------IDKALKEMYRVLKPGG--RLLVLEFSKPDNPVL 165 (238)
T ss_pred EEEEE---EHH---HCCCC----------------HHHHHHHHHHHHCCCE--EEEEEECCCCCCCHH
T ss_conf 89865---123---52787----------------8999999987626874--999987689986016
No 33
>pfam10672 Methyltrans_SAM S-adenosylmethionine-dependent methyltransferase. Members of this family are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases.
Probab=98.87 E-value=8.7e-08 Score=72.66 Aligned_cols=156 Identities=17% Similarity=0.162 Sum_probs=110.6
Q ss_pred HHCCCEEEEECCCCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHCCCCEEHHHHCCHHHHHHHHHHHHHCCCC--CC
Q ss_conf 3126548984155654211236666625860134688279999998616881005524989999999998750288--60
Q gi|254780634|r 207 TFQRGWFEIQDEGSQIVSNLTAITNSSQILDFCAGGGGKTLALSMLLNNKGQIHAWDNNKSRMAPIVARIKRAGIH--NV 284 (429)
Q Consensus 207 ~f~~G~~~VQD~aSql~~~~l~~~~g~~vLD~CAapGGKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~--~v 284 (429)
.-+-|+|.=|=+.=+++... -.|.+|||+||=-||=+++ +..++...|+++|.|+.=+...++|++..|+. .+
T Consensus 102 gqktG~flDqR~nR~~~~~~---~~g~rvLn~Fsytg~fsv~--A~~~GA~~v~~vD~S~~al~~a~~N~~lN~~~~~~~ 176 (286)
T pfam10672 102 NQNFGLFLDMRLGRRWVQEN---AKGKNVLNLFAYTCGFSVA--AIAGGASQVVNVDMARGSLSKGRDNHRLNGHDLGRV 176 (286)
T ss_pred CCCCEEEHHHHHHHHHHHHH---CCCCCEEEECCCCCHHHHH--HHHCCCCEEEEEECCHHHHHHHHHHHHHCCCCCCCE
T ss_conf 86667834238889999987---2898325311478699999--876798779999198899999999999769995436
Q ss_pred EEEECCCC--CC--CCCCCCCEEEECCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECC
Q ss_conf 88215543--44--572324678962754450444442236672496789999998789999999960898389997758
Q gi|254780634|r 285 QLHSSWES--LR--NLQEHFTTVLVDAPCSGTGTWRRRPDIKWRLSQKNLIERTEEQKKILEESAQFVRPEGYLVYITCS 360 (429)
Q Consensus 285 ~~~~~~~~--~~--~~~~~fd~vl~DaPCSg~G~~rr~Pe~~w~~~~~~~~~~~~lQ~~iL~~a~~~lk~gG~lvYsTCS 360 (429)
++...|.. +. .-.+.||.|++|+|-=.-| +|.. .+==.+|+..|.++|+|||.|+-++||
T Consensus 177 ~~~~~D~f~~l~~~~~~~~fD~VilDPPsf~k~--------~~~~--------~~~Y~~l~~~a~~ll~~gG~L~~~s~s 240 (286)
T pfam10672 177 SFLGHDIFKSWGKIKKLGPYDLVIIDPPSFQKG--------SFAL--------TKDYKKILRRLPELLVEGGTVLACVNS 240 (286)
T ss_pred EEEEEHHHHHHHHHHCCCCCCEEEECCCCCCCC--------HHHH--------HHHHHHHHHHHHHHCCCCCEEEEECCC
T ss_conf 999830999999986179998799879998887--------2478--------878999999999860899689998188
Q ss_pred CCHHHCHHHHHHHHHHCCCCEEEE
Q ss_conf 882429998999998579979941
Q gi|254780634|r 361 ILPEENIQQINYFLSKNPHFSIDS 384 (429)
Q Consensus 361 ~~~~Ene~vv~~fL~~~~~~~~~~ 384 (429)
-.-.+ +...+.+.+..++++++.
T Consensus 241 ~~l~~-~~~~~~~~~~~~~~~~~~ 263 (286)
T pfam10672 241 PAVGP-DFLIEEMAEEAPSLHFVE 263 (286)
T ss_pred CCCCH-HHHHHHHHHHCCCEEEEE
T ss_conf 65899-999999998587629999
No 34
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=98.84 E-value=5e-08 Score=74.29 Aligned_cols=128 Identities=13% Similarity=0.224 Sum_probs=90.2
Q ss_pred CCCCCCCCCCEEEECCCCCCHHHHHHHHHHCCCCEEHHHHCCHHHHHHHHHHHHHCCCCCCEEEECCCCC-CCCCCCCCE
Q ss_conf 1123666662586013468827999999861688100552498999999999875028860882155434-457232467
Q gi|254780634|r 224 SNLTAITNSSQILDFCAGGGGKTLALSMLLNNKGQIHAWDNNKSRMAPIVARIKRAGIHNVQLHSSWESL-RNLQEHFTT 302 (429)
Q Consensus 224 ~~~l~~~~g~~vLD~CAapGGKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~~~~~-~~~~~~fd~ 302 (429)
+.-++..||++|||.+||-||=+.+||+..+ ..|+.+|+++.-++..+++....+ .+++...+... +...++||.
T Consensus 45 l~~l~L~~~~kVLDvGCG~GG~a~~LA~~yg--~~V~GiDls~~~~~~A~er~~~~~--~v~f~~~d~~~~~f~d~sFDv 120 (263)
T PTZ00098 45 LSDIELDANSKVLDIGSGLGGGCKYINEKYG--AHTHGIDICEKIVNIAKERNQDKA--KIEFEAKDILKKDFPENNFDL 120 (263)
T ss_pred HHCCCCCCCCEEEEECCCCCHHHHHHHHHCC--CEEEEEECCHHHHHHHHHHCCCCC--CEEEEECCCCCCCCCCCCEEE
T ss_conf 8504889998688868887889999999749--879998588999999998551258--548996785367788674558
Q ss_pred EEECCCCCCCHHHHHHHHHHHHCCHHHHHHHH-HHHHHHHHHHHHHHCCCCEEEEEE--CCCCHHHCHHHHHHHHHH
Q ss_conf 89627544504444422366724967899999-987899999999608983899977--588824299989999985
Q gi|254780634|r 303 VLVDAPCSGTGTWRRRPDIKWRLSQKNLIERT-EEQKKILEESAQFVRPEGYLVYIT--CSILPEENIQQINYFLSK 376 (429)
Q Consensus 303 vl~DaPCSg~G~~rr~Pe~~w~~~~~~~~~~~-~lQ~~iL~~a~~~lk~gG~lvYsT--CS~~~~Ene~vv~~fL~~ 376 (429)
|.- .+.+..+. .=...++.+..+.|||||+|+.++ |+=...=.++..+++.++
T Consensus 121 V~S---------------------~dailHip~~DK~~l~~e~~RvLKPGG~llitDw~~~~~~~~s~~~~~yi~~r 176 (263)
T PTZ00098 121 IYS---------------------RDAILHLSLADKKKLFEKCYKWLKPNGILLITDYCADEIENWDDEFKAYIKKR 176 (263)
T ss_pred EEE---------------------EHHHHCCCHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCHHHHHHHHHC
T ss_conf 987---------------------50223088243999999999984688789997501357899739899999846
No 35
>cd00447 NusB_Sun RNA binding domain of NusB (N protein-Utilization Substance B) and Sun (also known as RrmB or Fmu) proteins. This family includes two orthologous groups exemplified by the transcription termination factor NusB and the N-terminal domain of the rRNA-specific 5-methylcytidine transferase (m5C-methyltransferase) Sun. The NusB protein plays a key role in the regulation of ribosomal RNA biosynthesis in eubacteria by modulating the efficiency of transcriptional antitermination. NusB along with other Nus factors (NusA, NusE/S10 and NusG) forms the core complex with the boxA element of the nut site of the rRNA operons. These interactions help RNA polymerase to counteract polarity during transcription of rRNA operons and allow stable antitermination. The transcription antitermination system can be appropriated by some bacteriophages such as lambda, which use the system to switch between the lysogenic and lytic modes of phage propagation. The m5C-methyltransferase Sun shares the
Probab=98.82 E-value=7.5e-08 Score=73.11 Aligned_cols=107 Identities=13% Similarity=0.053 Sum_probs=78.6
Q ss_pred HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC-----------HH-
Q ss_conf 689999999999999569978999999998685889557999999999999758999997056896-----------79-
Q gi|254780634|r 4 GGQIAAAIEILKDIRTHKKPITNSLKDWGMSHRFAGSSDRASISNIVHDVLRKYLSSAYIMDSDDP-----------ES- 71 (429)
Q Consensus 4 ~aR~~AA~eiL~~v~~~~~~ad~~L~~~~~~~r~lgs~DR~~i~~lvyg~lR~~~~ld~il~~~~~-----------r~- 71 (429)
+||- .|+++|.++..++.+++.++.+++..++ +++.|++|++++|||++|++..+|+++++... +.
T Consensus 1 ~AR~-~a~~~L~~~~~~~~~~~~~l~~~~~~~~-l~~~d~~~~~~lv~gv~~~~~~ld~~i~~~l~~~~~~~~~~i~~~i 78 (129)
T cd00447 1 SARE-IAFQALYQVEIRNGISLEAVLSALEKLQ-LAKKDRPFALELVYGVLRNLPELDDIISPLLKKWLLDRLDKVDRAI 78 (129)
T ss_pred CHHH-HHHHHHHHHHHHCCCHHHHHHHHHHHCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
T ss_conf 9899-9999999998209999999999998778-9778999999999999996999999999982788031100888999
Q ss_pred ---HHHHHHHHHCCCCHHHHHHHHHHHHHCC-CCCHHHHHHHHHC
Q ss_conf ---9999999743889899999885433034-3320467754420
Q gi|254780634|r 72 ---LVYAVIMKDWDIPWEKMLSMLKEDLFSP-PLPKESVIKSFHS 112 (429)
Q Consensus 72 ---~~~~~l~~~~~~~~~~~v~~~~~~~~~~-~~~~~~~~~~~~~ 112 (429)
.+++++++...+|.+.++++.++....- ......+++++..
T Consensus 79 Lrl~~~el~~~~~~ip~~~~InE~v~lak~~~~~~~~~fvNavLr 123 (129)
T cd00447 79 LRLLLYELYQLLYDVPPPVAINEAVELAKRFGDDDSAKFVNGVLR 123 (129)
T ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHH
T ss_conf 999999999850589851678999999998678863200799977
No 36
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=98.80 E-value=5.1e-08 Score=74.23 Aligned_cols=110 Identities=17% Similarity=0.209 Sum_probs=88.0
Q ss_pred CCCCCCCCCCCEEEECCCCCCHHHHHHHHHHCCCCEEHHHHCCHHHHHHHHHHHHHCCCCC-CEEEECCCCCC-CCCCCC
Q ss_conf 2112366666258601346882799999986168810055249899999999987502886-08821554344-572324
Q gi|254780634|r 223 VSNLTAITNSSQILDFCAGGGGKTLALSMLLNNKGQIHAWDNNKSRMAPIVARIKRAGIHN-VQLHSSWESLR-NLQEHF 300 (429)
Q Consensus 223 ~~~~l~~~~g~~vLD~CAapGGKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~-v~~~~~~~~~~-~~~~~f 300 (429)
...+|++++|++|||.-+|.|==|..||.+++..|.|+++|+++.-....++|+.++|+.| +.+...|.... +..+.|
T Consensus 64 ml~~L~~~~~~~VLeIGtGsGY~tAlla~l~~~~g~V~siE~~~~L~~~A~~~l~~l~~~n~v~v~~gdg~~G~~~~apf 143 (205)
T PRK13944 64 MCELIEPRPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGLEKHAPF 143 (205)
T ss_pred HHHHHCCCCCCEEEEECCCCCHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCCC
T ss_conf 99970689999899978985199999999837477179995369999999999998598633067976556577434980
Q ss_pred CEEEECCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECC
Q ss_conf 678962754450444442236672496789999998789999999960898389997758
Q gi|254780634|r 301 TTVLVDAPCSGTGTWRRRPDIKWRLSQKNLIERTEEQKKILEESAQFVRPEGYLVYITCS 360 (429)
Q Consensus 301 d~vl~DaPCSg~G~~rr~Pe~~w~~~~~~~~~~~~lQ~~iL~~a~~~lk~gG~lvYsTCS 360 (429)
|+|++.+-+.-. |..+ .+.|++||+||--.-.
T Consensus 144 D~Iiv~aa~~~i--------------P~~l--------------~~QL~~gGrLV~Pvg~ 175 (205)
T PRK13944 144 DAIIVTAAASTI--------------PSAL--------------VRQLKDGGVLVIPVEE 175 (205)
T ss_pred CEEEEEEECCCC--------------CHHH--------------HHHCCCCCEEEEEECC
T ss_conf 489998507768--------------9999--------------9854879799999878
No 37
>PRK13168 rumA 23S rRNA 5-methyluridine methyltransferase; Reviewed
Probab=98.80 E-value=2e-07 Score=70.27 Aligned_cols=150 Identities=15% Similarity=0.252 Sum_probs=104.9
Q ss_pred CCCCCCCCCCCEEEECCCCCCHHHHHHHHHHCCCCEEHHHHCCHHHHHHHHHHHHHCCCCCCEEEECCCC--CC---CCC
Q ss_conf 2112366666258601346882799999986168810055249899999999987502886088215543--44---572
Q gi|254780634|r 223 VSNLTAITNSSQILDFCAGGGGKTLALSMLLNNKGQIHAWDNNKSRMAPIVARIKRAGIHNVQLHSSWES--LR---NLQ 297 (429)
Q Consensus 223 ~~~~l~~~~g~~vLD~CAapGGKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~~~~--~~---~~~ 297 (429)
+..+++++++++|||+-||-|.=|+.||.. ...|+++|.++.=++.+++|+++.|+.|+++...+.. +. ...
T Consensus 286 a~~~l~~~~~~~VlDLYcGvGtfsl~LA~~---~~~V~gvE~~~~av~~A~~Na~~n~i~n~~f~~~d~~~~l~~~~~~~ 362 (440)
T PRK13168 286 ALEWLDPQPGDRVLDLFCGLGNFTLPLARQ---AAEVVGVEGVPAMVERARENARRNGLDNVTFYHANLFEDFTDQPWAK 362 (440)
T ss_pred HHHHHCCCCCCEEEEEECCCCCCCHHHHHC---CCEEEEEECCHHHHHHHHHHHHHCCCCCCEEEECCHHHHHHHHHHHC
T ss_conf 999852678988998623856211113530---67688760579999999999997499987899746456635578637
Q ss_pred CCCCEEEECCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHCHHHHHHHHHHC
Q ss_conf 32467896275445044444223667249678999999878999999996089838999775888242999899999857
Q gi|254780634|r 298 EHFTTVLVDAPCSGTGTWRRRPDIKWRLSQKNLIERTEEQKKILEESAQFVRPEGYLVYITCSILPEENIQQINYFLSKN 377 (429)
Q Consensus 298 ~~fd~vl~DaPCSg~G~~rr~Pe~~w~~~~~~~~~~~~lQ~~iL~~a~~~lk~gG~lvYsTCS~~~~Ene~vv~~fL~~~ 377 (429)
..||.|++|.|=+|.. +-+..+.+ ++| -++||.-|-...- --=++.+++
T Consensus 363 ~~~D~vi~DPPR~G~~--------------~~i~~l~~------------~~p-~~IvYVSCnPaTl--ARDl~~L~~-- 411 (440)
T PRK13168 363 GGFDKVLLDPPRAGAF--------------EVMQALAK------------LKP-KRIVYVSCNPATL--ARDAGVLVE-- 411 (440)
T ss_pred CCCCEEEECCCCCCHH--------------HHHHHHHH------------CCC-CEEEEECCCHHHH--HHHHHHHHH--
T ss_conf 9999899998852789--------------99999984------------798-9799993898999--999999987--
Q ss_pred CCCEEEECCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCEEEEEEEEEC
Q ss_conf 997994143002223455555555676984998044798621589999626
Q gi|254780634|r 378 PHFSIDSIIDDWNQLYDLKNHPSLFIENGCCVLTPFLTNTDGFFFCRLKRH 428 (429)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~dGff~a~l~k~ 428 (429)
.+|++..+. .+-++||.+..+ =+|+|+|.
T Consensus 412 ~GY~l~~i~--------------------~vDmFP~T~HvE--~vall~R~ 440 (440)
T PRK13168 412 AGYRLKRAG--------------------VLDMFPHTGHVE--SMALFERD 440 (440)
T ss_pred CCCEEEEEE--------------------EEECCCCCCEEE--EEEEEEEC
T ss_conf 894895999--------------------960699998389--99999839
No 38
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=98.77 E-value=6.1e-08 Score=73.73 Aligned_cols=129 Identities=16% Similarity=0.251 Sum_probs=94.7
Q ss_pred CEEEECCCCCCHHHHHHHHHHCCCCEEHHHHCCHHHHHHHHHHHHHCCCCC-CEEEECCCCCCCCCCCCCEEEECCCCCC
Q ss_conf 258601346882799999986168810055249899999999987502886-0882155434457232467896275445
Q gi|254780634|r 233 SQILDFCAGGGGKTLALSMLLNNKGQIHAWDNNKSRMAPIVARIKRAGIHN-VQLHSSWESLRNLQEHFTTVLVDAPCSG 311 (429)
Q Consensus 233 ~~vLD~CAapGGKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~-v~~~~~~~~~~~~~~~fd~vl~DaPCSg 311 (429)
++|||+.||-|+-+..||....+ .+|+++|+++.-++..+++++..|+.+ +.+...+....++.+.||.|+.-
T Consensus 1 krVLDiGCG~G~~~~~LA~~~p~-~~v~GvDiS~~~ie~Ar~r~~~~gl~~rv~~~~~Da~~lpf~d~FD~V~s~----- 74 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERHPH-LQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKDPFPDTYDLVFGF----- 74 (224)
T ss_pred CEEEEEECCCCHHHHHHHHHCCC-CEEEEEECCHHHHHHHHHHHHHCCCCCCEEEEECCHHCCCCCCCCCEEEHH-----
T ss_conf 90899836688889999997799-889999799999999999999729986514785211039999983567685-----
Q ss_pred CHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEE-C--CCCHHHCHHHHHH---------HHHHCCC
Q ss_conf 04444422366724967899999987899999999608983899977-5--8882429998999---------9985799
Q gi|254780634|r 312 TGTWRRRPDIKWRLSQKNLIERTEEQKKILEESAQFVRPEGYLVYIT-C--SILPEENIQQINY---------FLSKNPH 379 (429)
Q Consensus 312 ~G~~rr~Pe~~w~~~~~~~~~~~~lQ~~iL~~a~~~lk~gG~lvYsT-C--S~~~~Ene~vv~~---------fL~~~~~ 379 (429)
.++.+=|| -...|.+..+.|||||++|.+. | +..|.+-+++-.+ +|..| +
T Consensus 75 -evl~Hi~D----------------~~~~l~ei~RvLKPGG~lviaD~~~n~~~~i~~~~~~~~~~t~~eW~~ll~~~-~ 136 (224)
T smart00828 75 -EVIHHIKD----------------KMDLFSNISRHLKDGGHLVLADFIANLLSAIEHEETTSYLVTREEWAELLARN-N 136 (224)
T ss_pred -HHHHCCCC----------------HHHHHHHHHHHCCCCEEEEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHC-C
T ss_conf -35765399----------------99999999987179849999985337888777876300247899999999767-8
Q ss_pred CEEEEC
Q ss_conf 799414
Q gi|254780634|r 380 FSIDSI 385 (429)
Q Consensus 380 ~~~~~~ 385 (429)
|.+++.
T Consensus 137 l~~~~~ 142 (224)
T smart00828 137 LRVVEG 142 (224)
T ss_pred CEEEEE
T ss_conf 536652
No 39
>PRK05134 3-demethylubiquinone-9 3-methyltransferase; Provisional
Probab=98.76 E-value=3.8e-08 Score=75.14 Aligned_cols=108 Identities=15% Similarity=0.249 Sum_probs=80.6
Q ss_pred CCCCCCCEEEECCCCCCHHHHHHHHHHCCCCEEHHHHCCHHHHHHHHHHHHHCCCCCCEEEECC--CCCCCCCCCCCEEE
Q ss_conf 3666662586013468827999999861688100552498999999999875028860882155--43445723246789
Q gi|254780634|r 227 TAITNSSQILDFCAGGGGKTLALSMLLNNKGQIHAWDNNKSRMAPIVARIKRAGIHNVQLHSSW--ESLRNLQEHFTTVL 304 (429)
Q Consensus 227 l~~~~g~~vLD~CAapGGKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~~--~~~~~~~~~fd~vl 304 (429)
+.|-.|.+|||..||.|-=|-.||.+ .+.|+++|.++.-++..+.+++..|+ ++.....+ .......++||.|.
T Consensus 44 ~~~l~G~~ILDVGCGgG~lse~LAr~---Ga~VtGID~S~~~I~~Ar~ha~~~~l-~i~y~~~~~e~l~~~~~~~FDvV~ 119 (233)
T PRK05134 44 AGGLFGKRVLDVGCGGGILSESMARL---GATVTGIDASEENIEVARLHALESGL-KIDYRQITAEELAAEHPGQFDVVT 119 (233)
T ss_pred CCCCCCCEEEEECCCCCHHHHHHHHC---CCEEEEECCCHHHHHHHHHHHHHCCC-CCEEEECCHHHHHHHCCCCEEEEE
T ss_conf 14668998999755897112899967---99799987998999999998564434-511675147665430578634774
Q ss_pred ECCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECC
Q ss_conf 62754450444442236672496789999998789999999960898389997758
Q gi|254780634|r 305 VDAPCSGTGTWRRRPDIKWRLSQKNLIERTEEQKKILEESAQFVRPEGYLVYITCS 360 (429)
Q Consensus 305 ~DaPCSg~G~~rr~Pe~~w~~~~~~~~~~~~lQ~~iL~~a~~~lk~gG~lvYsTCS 360 (429)
+ +.++-+= .=....+.+++++|||||.|++||=-
T Consensus 120 ~------~EVlEHV----------------~d~~~~l~~~~rlLKPGG~l~lsTiN 153 (233)
T PRK05134 120 C------MEMLEHV----------------PDPASFIRACAKLVKPGGLVFFSTLN 153 (233)
T ss_pred E------EHHHHHC----------------CCHHHHHHHHHHHHCCCCEEEEECCC
T ss_conf 4------2147753----------------89999999999973899149997267
No 40
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=98.76 E-value=8.7e-08 Score=72.68 Aligned_cols=138 Identities=16% Similarity=0.211 Sum_probs=102.1
Q ss_pred CCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHCCCCEEHHHHCCHHHHHHHHHHHHHCCCCCCEEEEC-CCCCCCCCC-C
Q ss_conf 42112366666258601346882799999986168810055249899999999987502886088215-543445723-2
Q gi|254780634|r 222 IVSNLTAITNSSQILDFCAGGGGKTLALSMLLNNKGQIHAWDNNKSRMAPIVARIKRAGIHNVQLHSS-WESLRNLQE-H 299 (429)
Q Consensus 222 l~~~~l~~~~g~~vLD~CAapGGKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~-~~~~~~~~~-~ 299 (429)
..+.+..+++|+.|||-.||-||=-.. |.+|+ ..++.+|++.+.+...+.|++..|+....+... |....++.+ .
T Consensus 188 ~mVNLa~v~~G~~vlDPFcGTGgiLiE-agl~G--~~viG~Did~~mv~gak~Nl~~y~i~~~~~~~~~Da~~lpl~~~~ 264 (347)
T COG1041 188 AMVNLARVKRGELVLDPFCGTGGILIE-AGLMG--ARVIGSDIDERMVRGAKINLEYYGIEDYPVLKVLDATNLPLRDNS 264 (347)
T ss_pred HHHHHHCCCCCCEEECCCCCCCHHHHH-HHHCC--CEEEECCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCC
T ss_conf 987774164698764576783488883-66427--567603237999855664156627676168873022127788774
Q ss_pred CCEEEECCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHCHHHHHHHHHHCCC
Q ss_conf 46789627544504444422366724967899999987899999999608983899977588824299989999985799
Q gi|254780634|r 300 FTTVLVDAPCSGTGTWRRRPDIKWRLSQKNLIERTEEQKKILEESAQFVRPEGYLVYITCSILPEENIQQINYFLSKNPH 379 (429)
Q Consensus 300 fd~vl~DaPCSg~G~~rr~Pe~~w~~~~~~~~~~~~lQ~~iL~~a~~~lk~gG~lvYsTCS~~~~Ene~vv~~fL~~~~~ 379 (429)
||.|..|+|--=+-... ...+..|=.+.|+.+.+.||+||++|+++==...+|++ ..+
T Consensus 265 vdaIatDPPYGrst~~~-------------~~~l~~Ly~~~le~~~evLk~gG~~vf~~p~~~~~~~~---------~~~ 322 (347)
T COG1041 265 VDAIATDPPYGRSTKIK-------------GEGLDELYEEALESASEVLKPGGRIVFAAPRDPRHELE---------ELG 322 (347)
T ss_pred CCEEEECCCCCCCCCCC-------------CCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHH---------HCC
T ss_conf 23588469987100245-------------55289999999999998730484899961786055676---------439
Q ss_pred CEEEE
Q ss_conf 79941
Q gi|254780634|r 380 FSIDS 384 (429)
Q Consensus 380 ~~~~~ 384 (429)
|.++.
T Consensus 323 f~v~~ 327 (347)
T COG1041 323 FKVLG 327 (347)
T ss_pred CEEEE
T ss_conf 65999
No 41
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=98.73 E-value=1.4e-07 Score=71.30 Aligned_cols=140 Identities=19% Similarity=0.321 Sum_probs=109.6
Q ss_pred CCCCHHCCHHHCCCEEEEECCCCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHCCCCEEHHHHCCHHHHHHHHHHHH
Q ss_conf 46101109631265489841556542112366666258601346882799999986168810055249899999999987
Q gi|254780634|r 198 RLPNVMNDITFQRGWFEIQDEGSQIVSNLTAITNSSQILDFCAGGGGKTLALSMLLNNKGQIHAWDNNKSRMAPIVARIK 277 (429)
Q Consensus 198 ~~~~~~~~~~f~~G~~~VQD~aSql~~~~l~~~~g~~vLD~CAapGGKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~ 277 (429)
..|+++..... |.||++....+++....+|||++||-|-=+..++.... ..+|+++|++..=+...+.|++
T Consensus 171 slPGVFS~~~l--------D~GS~lLL~~l~~~~~g~VLDlGCG~Gvi~~~la~~~p-~~~v~l~Dv~a~Al~~ar~nl~ 241 (342)
T PRK09489 171 TLPGVFSRDGL--------DVGSQLLLSTLTPHTKGKVLDVGCGAGVLSAVLAQHSP-KIRLTLCDVSAPAVEASRATLA 241 (342)
T ss_pred CCCCCCCCCCC--------CHHHHHHHHHCCCCCCCCEEEECCCHHHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHH
T ss_conf 36875789997--------87999999737832488478606781799999998699-9769999688999999999899
Q ss_pred HCCCCCCEEEECCCCCCCCCCCCCEEEECCCC-CCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEE
Q ss_conf 50288608821554344572324678962754-45044444223667249678999999878999999996089838999
Q gi|254780634|r 278 RAGIHNVQLHSSWESLRNLQEHFTTVLVDAPC-SGTGTWRRRPDIKWRLSQKNLIERTEEQKKILEESAQFVRPEGYLVY 356 (429)
Q Consensus 278 r~g~~~v~~~~~~~~~~~~~~~fd~vl~DaPC-Sg~G~~rr~Pe~~w~~~~~~~~~~~~lQ~~iL~~a~~~lk~gG~lvY 356 (429)
+.++.+ ++...+. .....++||.|+.-.|= +|..| + ..+=.+++..|.+.|+|||.|.-
T Consensus 242 ~N~l~~-~v~~sd~-~~~v~~~fD~IvsNPPFH~G~~~-----------~-------~~i~~~fi~~A~~~L~~gG~L~i 301 (342)
T PRK09489 242 ANGLEG-EVFASNV-FSEIKGRFDMIISNPPFHDGIQT-----------S-------LDAAQTLIRGAVRHLNSGGELRI 301 (342)
T ss_pred HHCCCC-EEEECCC-CCCCCCCCCEEEECCCCCCCCCC-----------C-------HHHHHHHHHHHHHHHHCCCEEEE
T ss_conf 809886-8997564-45655678989968852157526-----------5-------89999999999986124988999
Q ss_pred EECCCCHHHC
Q ss_conf 7758882429
Q gi|254780634|r 357 ITCSILPEEN 366 (429)
Q Consensus 357 sTCS~~~~En 366 (429)
..=+..|-|.
T Consensus 302 VANr~LpY~~ 311 (342)
T PRK09489 302 VANAFLPYPD 311 (342)
T ss_pred EECCCCCCHH
T ss_conf 9818989689
No 42
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=98.73 E-value=1e-07 Score=72.25 Aligned_cols=130 Identities=15% Similarity=0.144 Sum_probs=85.0
Q ss_pred CCCCCEEEECCCCCCHHHHHHHHHHCCCCEEHHHHCCHHHHHHHHHHHHHCCCCCCEEEECCCCCC--------CC-CCC
Q ss_conf 666625860134688279999998616881005524989999999998750288608821554344--------57-232
Q gi|254780634|r 229 ITNSSQILDFCAGGGGKTLALSMLLNNKGQIHAWDNNKSRMAPIVARIKRAGIHNVQLHSSWESLR--------NL-QEH 299 (429)
Q Consensus 229 ~~~g~~vLD~CAapGGKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~~~~~~--------~~-~~~ 299 (429)
.++|+.|||+||||||=|-.+++.++..|.|+++|+.+-. -+.++.+...|.+.+ .. ..+
T Consensus 49 ~~~~~~VlDLGaAPG~WsQva~~~~~~~g~VigVDl~~~~-----------pi~gv~~i~gDi~~~~~~~~i~~~~~~~~ 117 (209)
T PRK11188 49 FKPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILPMD-----------PIVGVDFLQGDFRDELVLKALLERVGDSK 117 (209)
T ss_pred CCCCCEEEEECCCCCHHHHHHHHHCCCCCEEEEEECCCCC-----------CCCCCEEECCCCCCHHHHHHHHHHHCCCC
T ss_conf 5789989980689975789999973999739998653045-----------37896764034458899999999858987
Q ss_pred CCEEEECCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHCHHHHHHHHHHC-C
Q ss_conf 467896275445044444223667249678999999878999999996089838999775888242999899999857-9
Q gi|254780634|r 300 FTTVLVDAPCSGTGTWRRRPDIKWRLSQKNLIERTEEQKKILEESAQFVRPEGYLVYITCSILPEENIQQINYFLSKN-P 378 (429)
Q Consensus 300 fd~vl~DaPCSg~G~~rr~Pe~~w~~~~~~~~~~~~lQ~~iL~~a~~~lk~gG~lvYsTCS~~~~Ene~vv~~fL~~~-~ 378 (429)
||.||-|.-=.-+|.- . -|-..-..|=...|+-|.+.|+|||.+|- =++.-+.++.+...++++ .
T Consensus 118 ~DvVlSDmAPn~tG~~--------~---~D~~~s~~L~~~al~~a~~~Lk~gG~fv~---K~F~G~~~~~~~~~~k~~F~ 183 (209)
T PRK11188 118 VDVVMSDMAPNMSGTP--------A---VDIPRAMYLVELALDMCRQVLAPGGSFVV---KVFQGEGFDEYLREIRSLFT 183 (209)
T ss_pred CCEEECCCCCCCCCCH--------H---HHHHHHHHHHHHHHHHHHHHCCCCCEEEE---EEECCCCHHHHHHHHHCCCC
T ss_conf 3089666665667870--------3---35999999999999999986267988999---99648799999999970259
Q ss_pred CCEEE
Q ss_conf 97994
Q gi|254780634|r 379 HFSID 383 (429)
Q Consensus 379 ~~~~~ 383 (429)
.+...
T Consensus 184 ~V~~~ 188 (209)
T PRK11188 184 KVKVR 188 (209)
T ss_pred EEEEE
T ss_conf 78899
No 43
>pfam05958 tRNA_U5-meth_tr tRNA (Uracil-5-)-methyltransferase. This family consists of (Uracil-5-)-methyltransferases EC:2.1.1.35 from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity.
Probab=98.73 E-value=3.5e-07 Score=68.59 Aligned_cols=147 Identities=19% Similarity=0.257 Sum_probs=99.0
Q ss_pred CCCCCCCCCCCEEEECCCCCCHHHHHHHHHHCCCCEEHHHHCCHHHHHHHHHHHHHCCCCCCEEEECCCC--C-------
Q ss_conf 2112366666258601346882799999986168810055249899999999987502886088215543--4-------
Q gi|254780634|r 223 VSNLTAITNSSQILDFCAGGGGKTLALSMLLNNKGQIHAWDNNKSRMAPIVARIKRAGIHNVQLHSSWES--L------- 293 (429)
Q Consensus 223 ~~~~l~~~~g~~vLD~CAapGGKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~~~~--~------- 293 (429)
+..++++.+++ |||+.||-|+=|+.||... .+|+++|+++.=++.+++|++..|+.|++....+.. .
T Consensus 190 a~~~~~~~~~~-vlDlYcG~Gtfsl~lA~~~---~~V~GvE~~~~AV~~A~~Na~~N~i~Nv~f~~~~~~~~~~~~~~~~ 265 (353)
T pfam05958 190 ACEVTQGSKGD-LLELYCGNGNFSLALAQNF---RRVLATEIAKPSVNAAQYNIAANNIDNVQIIRMSAEEFTQAMNGVR 265 (353)
T ss_pred HHHHHHCCCCC-EEEEECCCCHHHHHHHHHC---CEEEEEECCHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHCCC
T ss_conf 99986268995-8998468888889998647---8799996259999999998998699864999728999999875242
Q ss_pred --CC------CCCCCCEEEECCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHH
Q ss_conf --45------7232467896275445044444223667249678999999878999999996089838999775888242
Q gi|254780634|r 294 --RN------LQEHFTTVLVDAPCSGTGTWRRRPDIKWRLSQKNLIERTEEQKKILEESAQFVRPEGYLVYITCSILPEE 365 (429)
Q Consensus 294 --~~------~~~~fd~vl~DaPCSg~G~~rr~Pe~~w~~~~~~~~~~~~lQ~~iL~~a~~~lk~gG~lvYsTCS~~~~E 365 (429)
.. ....||.|++|+|=+|.+- +-+. + + .++ ..+||.-|-...-
T Consensus 266 ~~~~~~~i~~~~~~~d~vvlDPPR~G~~~-------------~~~~-~-------i------~~~-~rIvYVSCnP~Tl- 316 (353)
T pfam05958 266 EFRRLKGIDLKSYNCSTIFVDPPRAGLDP-------------DTCK-L-------V------QAY-ERILYISCNPETL- 316 (353)
T ss_pred HHHHCCCCCCCCCCCCCEEECCCCCCCHH-------------HHHH-H-------H------HCC-CCEEEEECCHHHH-
T ss_conf 23320366632246772584898777739-------------9999-9-------8------469-9689994899999-
Q ss_pred CHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCEEEEEEEEEC
Q ss_conf 999899999857997994143002223455555555676984998044798621589999626
Q gi|254780634|r 366 NIQQINYFLSKNPHFSIDSIIDDWNQLYDLKNHPSLFIENGCCVLTPFLTNTDGFFFCRLKRH 428 (429)
Q Consensus 366 ne~vv~~fL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~dGff~a~l~k~ 428 (429)
-.-++. |.+ ++++..+. .+=++||.+..+ =+++|.||
T Consensus 317 -aRDl~~-L~~--~Y~l~~v~--------------------pvDmFPqT~HvE--~V~lL~rK 353 (353)
T pfam05958 317 -KANLEQ-LSE--THRVERFA--------------------LFDQFPYTHHME--CGVLLERK 353 (353)
T ss_pred -HHHHHH-HHC--CCEEEEEE--------------------EECCCCCCCEEE--EEEEEECC
T ss_conf -999999-840--64787999--------------------823699997189--89999809
No 44
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=98.72 E-value=2.2e-07 Score=69.87 Aligned_cols=150 Identities=19% Similarity=0.225 Sum_probs=105.4
Q ss_pred CCCEEEECCCCCCHHHHHHHHHHCCCCEEHHHHCCHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCCEEEECCCCC
Q ss_conf 66258601346882799999986168810055249899999999987502886088215543445723246789627544
Q gi|254780634|r 231 NSSQILDFCAGGGGKTLALSMLLNNKGQIHAWDNNKSRMAPIVARIKRAGIHNVQLHSSWESLRNLQEHFTTVLVDAPCS 310 (429)
Q Consensus 231 ~g~~vLD~CAapGGKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~~~~~~~~~~~fd~vl~DaPCS 310 (429)
...+|||+|+|.|-=.+.|+.... ...++|+|+|+.=++..++|++++|+.|+.+...+....-...+||.|+.-.|-=
T Consensus 109 ~~~~ilDlgtGSGcI~isLa~~~p-~~~v~a~DiS~~Al~~A~~Na~~~~l~~v~~~~~d~~~~~~~~~fDlIVSNPPYI 187 (277)
T PRK09328 109 QPCRILDLGTGTGAIALALASERP-DCEVTAVDRMPDAVALAQRNAQHLAIKNVRILQSDWFSALSGQQFAMIVSNPPYI 187 (277)
T ss_pred CCCEEEEECCCHHHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHCCCCEEEEEECCCHHHCCCCCCCEEEECCCCC
T ss_conf 788189954556999999998677-9899996489999999999999809886999944752113787778899789987
Q ss_pred CCHH-------HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHCHHHHHHHHHHCCCCEEE
Q ss_conf 5044-------444223667249678999999878999999996089838999775888242999899999857997994
Q gi|254780634|r 311 GTGT-------WRRRPDIKWRLSQKNLIERTEEQKKILEESAQFVRPEGYLVYITCSILPEENIQQINYFLSKNPHFSID 383 (429)
Q Consensus 311 g~G~-------~rr~Pe~~w~~~~~~~~~~~~lQ~~iL~~a~~~lk~gG~lvYsTCS~~~~Ene~vv~~fL~~~~~~~~~ 383 (429)
.+.- ++..|..-.- ..+|- -..-+.|+..+.++|+|||.|+-= +...-. +.|..++++ .+|.-+
T Consensus 188 ~~~~~~~~~~~v~~EP~~AL~-gg~dG---l~~~~~ii~~a~~~L~~~G~l~~E---ig~~Q~-~~v~~l~~~-~gf~~i 258 (277)
T PRK09328 188 DAQDPHLQQGDVRFEPLSALV-AADNG---MADLAHIIEQARQYLVPGGWLLLE---HGWQQG-EAVRQLFIR-AGYSDV 258 (277)
T ss_pred CCCHHHHCCHHCCCCCHHHHH-CCCCH---HHHHHHHHHHHHHHCCCCCEEEEE---ECHHHH-HHHHHHHHH-CCCCEE
T ss_conf 700034382421668389981-79758---999999999999844669899999---681589-999999996-799704
Q ss_pred ECCCCCC
Q ss_conf 1430022
Q gi|254780634|r 384 SIIDDWN 390 (429)
Q Consensus 384 ~~~~~~~ 390 (429)
.+..++.
T Consensus 259 ~~~kDl~ 265 (277)
T PRK09328 259 ETCRDYG 265 (277)
T ss_pred EEECCCC
T ss_conf 7861789
No 45
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=98.70 E-value=5.7e-07 Score=67.10 Aligned_cols=145 Identities=21% Similarity=0.297 Sum_probs=101.4
Q ss_pred EEEECCCCCCHHHHHHHHHHCCCCEEHHHHCCHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCCEEEECCCCC-CC
Q ss_conf 58601346882799999986168810055249899999999987502886088215543445723246789627544-50
Q gi|254780634|r 234 QILDFCAGGGGKTLALSMLLNNKGQIHAWDNNKSRMAPIVARIKRAGIHNVQLHSSWESLRNLQEHFTTVLVDAPCS-GT 312 (429)
Q Consensus 234 ~vLD~CAapGGKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~~~~~~~~~~~fd~vl~DaPCS-g~ 312 (429)
+|||+|+|-|-=++.++.... ...|+|+|+|+.=++..++|+.+.|+.++..... +......++||.|+.-+|-= ..
T Consensus 113 ~ilDlGTGSG~iai~la~~~~-~~~V~a~Dis~~Al~~A~~Na~~~~l~~~~~~~~-dlf~~~~~~fDlIVsNPPYip~~ 190 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEGP-DAEVIAVDISPDALALARENAERNGLVRVLVVQS-DLFEPLRGKFDLIVSNPPYIPAE 190 (280)
T ss_pred CEEEECCCCCHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHHCCCCEEEEEC-CHHHCCCCCCCEEEECCCCCCCC
T ss_conf 189965883199999996189-8879999899999999999999828974798740-03334688857799689988885
Q ss_pred ------HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHCHHHHHHHHHHCCCCEEEECC
Q ss_conf ------44444223667249678999999878999999996089838999775888242999899999857997994143
Q gi|254780634|r 313 ------GTWRRRPDIKWRLSQKNLIERTEEQKKILEESAQFVRPEGYLVYITCSILPEENIQQINYFLSKNPHFSIDSII 386 (429)
Q Consensus 313 ------G~~rr~Pe~~w~~~~~~~~~~~~lQ~~iL~~a~~~lk~gG~lvYsTCS~~~~Ene~vv~~fL~~~~~~~~~~~~ 386 (429)
++++..|..----.. + =-..=+.|+..+...++|||.++. -++.+. .+.|.+.|.+... |..+...
T Consensus 191 ~~~~~~~~~~~EP~~Al~~g~-d---Gl~~~~~i~~~a~~~l~~~g~l~l-e~g~~q--~~~v~~~~~~~~~-~~~v~~~ 262 (280)
T COG2890 191 DPELLPEVVRYEPLLALVGGG-D---GLEVYRRILGEAPDILKPGGVLIL-EIGLTQ--GEAVKALFEDTGF-FEIVETL 262 (280)
T ss_pred CCCCCCCCCCCCHHHHHHCCC-C---HHHHHHHHHHHHHHHCCCCCEEEE-EECCCC--HHHHHHHHHHCCC-CEEEEEE
T ss_conf 211374213589799872487-7---789999999989987286828999-976984--8999999997498-4476655
Q ss_pred CC
Q ss_conf 00
Q gi|254780634|r 387 DD 388 (429)
Q Consensus 387 ~~ 388 (429)
..
T Consensus 263 ~d 264 (280)
T COG2890 263 KD 264 (280)
T ss_pred EC
T ss_conf 14
No 46
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=98.68 E-value=5.8e-07 Score=67.08 Aligned_cols=135 Identities=17% Similarity=0.279 Sum_probs=98.2
Q ss_pred CCCCCEEEECCCCCCHHHHHHHHHHCCCCEEHHHHCCHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCCEEEECCC
Q ss_conf 66662586013468827999999861688100552498999999999875028860882155434457232467896275
Q gi|254780634|r 229 ITNSSQILDFCAGGGGKTLALSMLLNNKGQIHAWDNNKSRMAPIVARIKRAGIHNVQLHSSWESLRNLQEHFTTVLVDAP 308 (429)
Q Consensus 229 ~~~g~~vLD~CAapGGKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~~~~~~~~~~~fd~vl~DaP 308 (429)
.+| .++||+.||.|.-++.||++ .-.|+|+|+|+.-+..+++.+...|+.++.....|.....+.+.||.|+.
T Consensus 29 ~~~-g~~LDlgcG~Grna~~La~~---G~~VtavD~s~~al~~~~~~a~~~~l~~v~~~~~Dl~~~~~~~~yDlIls--- 101 (198)
T PRK11207 29 VKP-GRTLDLGCGNGRNSLYLAAN---GYDVTAWDKNPMSIANLERIKAAENLDNLHTRVVDLNNLTFDGEYDFILS--- 101 (198)
T ss_pred CCC-CCEEEECCCCCHHHHHHHHC---CCEEEEEECCHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCEEEE---
T ss_conf 899-74777247887869999868---98599997999999999999987599824656203123887777058978---
Q ss_pred CCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEE--------CCC----CHHHCHHHHHHHHHH
Q ss_conf 44504444422366724967899999987899999999608983899977--------588----824299989999985
Q gi|254780634|r 309 CSGTGTWRRRPDIKWRLSQKNLIERTEEQKKILEESAQFVRPEGYLVYIT--------CSI----LPEENIQQINYFLSK 376 (429)
Q Consensus 309 CSg~G~~rr~Pe~~w~~~~~~~~~~~~lQ~~iL~~a~~~lk~gG~lvYsT--------CS~----~~~Ene~vv~~fL~~ 376 (429)
++++ -.+.|..+ -.++.+..+.++|||+++... |++ .-.||| ..+-
T Consensus 102 ---tvv~-------~fl~p~~~-------p~iia~mq~~t~PGG~~LIV~~~dt~d~p~~~~fpf~f~~gE-----L~~y 159 (198)
T PRK11207 102 ---TVVL-------MFLEAKTI-------PGLIANMQRCTKPGGYNLIVAAMDTADYPCTVGFPFAFKEGE-----LRRY 159 (198)
T ss_pred ---EEEE-------EECCHHHH-------HHHHHHHHHHCCCCCEEEEEEECCHHHCCCCCCCCCCCCHHH-----HHHH
T ss_conf ---6452-------10486678-------999999999608994899999745423789989777668579-----9987
Q ss_pred CCCCEEEECCCCCCCC
Q ss_conf 7997994143002223
Q gi|254780634|r 377 NPHFSIDSIIDDWNQL 392 (429)
Q Consensus 377 ~~~~~~~~~~~~~~~~ 392 (429)
..+|+++......++.
T Consensus 160 y~~W~il~YnE~~g~l 175 (198)
T PRK11207 160 YEGWEMVKYNEDVGEL 175 (198)
T ss_pred HCCCEEEEECCCHHHH
T ss_conf 2799799843156888
No 47
>TIGR03534 RF_mod_HemK protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK, a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. However, the family is diverse enough that even many members of the seed alignment do not score above the seed alignment, which was set high enough to exclude all instances of PrmB.
Probab=98.67 E-value=4.1e-07 Score=68.09 Aligned_cols=152 Identities=18% Similarity=0.260 Sum_probs=107.7
Q ss_pred CCCEEEECCCCCCHHHHHHHHHHCCCCEEHHHHCCHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCCEEEECCCCC
Q ss_conf 66258601346882799999986168810055249899999999987502886088215543445723246789627544
Q gi|254780634|r 231 NSSQILDFCAGGGGKTLALSMLLNNKGQIHAWDNNKSRMAPIVARIKRAGIHNVQLHSSWESLRNLQEHFTTVLVDAPCS 310 (429)
Q Consensus 231 ~g~~vLD~CAapGGKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~~~~~~~~~~~fd~vl~DaPCS 310 (429)
.+.+|||+|+|.|-=++.+|.... ...++|+|+++.-++..++|+++.|+.|+.+...+....-..++||.|+.-+|-=
T Consensus 87 ~~~~ilDlgtGSG~I~i~la~~~~-~~~v~~~Dis~~Al~~A~~N~~~~~~~~v~~~~~d~~~~~~~~~fDlIvsNPPYI 165 (251)
T TIGR03534 87 GPLKVLDLGTGSGAIALALAKERP-DARVTAVDISPEALAVARKNAKRLGLENVRFLKSDWFEPLPGGKFDLIVSNPPYI 165 (251)
T ss_pred CCCEEEEECCCHHHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHCCCCEEEEEECCHHHCCCCCCCCEEEECCCCC
T ss_conf 898699955671699999999679-9789999898799999999999809982686513143215689866899789988
Q ss_pred CCHHHHH-HHHHHHHCCHHHH----HHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHCHHHHHHHHHHCCCCEEEEC
Q ss_conf 5044444-2236672496789----9999987899999999608983899977588824299989999985799799414
Q gi|254780634|r 311 GTGTWRR-RPDIKWRLSQKNL----IERTEEQKKILEESAQFVRPEGYLVYITCSILPEENIQQINYFLSKNPHFSIDSI 385 (429)
Q Consensus 311 g~G~~rr-~Pe~~w~~~~~~~----~~~~~lQ~~iL~~a~~~lk~gG~lvYsTCS~~~~Ene~vv~~fL~~~~~~~~~~~ 385 (429)
.+..+.. .||++.. .|..- ..=-..=+.|+..+.++|+|||.++-= +.+. ..+.|..+++++ +|..+..
T Consensus 166 ~~~e~~~l~~eV~~~-EP~~AL~gg~dGl~~~~~ii~~a~~~L~~~G~l~~E---ig~~-q~~~v~~l~~~~-gf~~i~~ 239 (251)
T TIGR03534 166 PEADIHLLDPEVRFH-EPKLALFAGEDGLDFYRRIIAQAPRYLKPGGWLLLE---IGYD-QGEAVRALFEAA-GFADVET 239 (251)
T ss_pred CHHHHHHCCCHHCCC-CHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCEEEEE---ECHH-HHHHHHHHHHHC-CCCEEEE
T ss_conf 745666328601026-729997179846999999999999853679889999---6837-899999999968-9970688
Q ss_pred CCCC
Q ss_conf 3002
Q gi|254780634|r 386 IDDW 389 (429)
Q Consensus 386 ~~~~ 389 (429)
..++
T Consensus 240 ~kDl 243 (251)
T TIGR03534 240 RKDL 243 (251)
T ss_pred EECC
T ss_conf 5078
No 48
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=98.67 E-value=1.9e-07 Score=70.34 Aligned_cols=105 Identities=20% Similarity=0.279 Sum_probs=84.4
Q ss_pred CCCCCCCCCCCEEEECCCCCCHHHHHHHHHHCCCCEEHHHHCCHHHHHHHHHHHHHCCCCCCEEEECCCCCC-CCCCCCC
Q ss_conf 211236666625860134688279999998616881005524989999999998750288608821554344-5723246
Q gi|254780634|r 223 VSNLTAITNSSQILDFCAGGGGKTLALSMLLNNKGQIHAWDNNKSRMAPIVARIKRAGIHNVQLHSSWESLR-NLQEHFT 301 (429)
Q Consensus 223 ~~~~l~~~~g~~vLD~CAapGGKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~~~~~~-~~~~~fd 301 (429)
..++|++++|++||+.-+|.|==|..||.+. ++|+++|+++.=....++|+..+|+.||.+...+.... +..+.||
T Consensus 70 ml~~L~l~~~~~VLeIGtGsGY~tAlLa~l~---~~V~siE~~~~l~~~a~~~l~~~~~~nv~~~~gdg~~g~~~~~pfD 146 (213)
T PRK00312 70 MTELLELKPGDRVLEIGTGSGYQAAVLAHLV---ERVFSVERIKTLQWQAKRRLKQLGLHNVSVRHGDGWKGWPAYAPFD 146 (213)
T ss_pred HHHHHCCCCCCEEEEECCCCCHHHHHHHHHC---CCEEEEECCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCC
T ss_conf 9998436899759996598609999999862---9289994289999999999998499876999688766787669724
Q ss_pred EEEECCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEE
Q ss_conf 789627544504444422366724967899999987899999999608983899977
Q gi|254780634|r 302 TVLVDAPCSGTGTWRRRPDIKWRLSQKNLIERTEEQKKILEESAQFVRPEGYLVYIT 358 (429)
Q Consensus 302 ~vl~DaPCSg~G~~rr~Pe~~w~~~~~~~~~~~~lQ~~iL~~a~~~lk~gG~lvYsT 358 (429)
+|++.+.|.. -| .. -.+.|++||+||--.
T Consensus 147 ~Iii~~a~~~------~P--------~~--------------l~~qL~~gGrLV~Pi 175 (213)
T PRK00312 147 RILVTAAAPE------IP--------RA--------------LLDQLAEGGILVAPI 175 (213)
T ss_pred EEEEEECCHH------HH--------HH--------------HHHHCCCCCEEEEEE
T ss_conf 8999843412------25--------99--------------998453297999998
No 49
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.67 E-value=2e-07 Score=70.29 Aligned_cols=106 Identities=16% Similarity=0.246 Sum_probs=87.4
Q ss_pred CCCCCCCCCCCEEEECCCCCCHHHHHHHHHHCCCCEEHHHHCCHHHHHHHHHHHHHCCCCCCEEEECCCCCCCC-CCCCC
Q ss_conf 21123666662586013468827999999861688100552498999999999875028860882155434457-23246
Q gi|254780634|r 223 VSNLTAITNSSQILDFCAGGGGKTLALSMLLNNKGQIHAWDNNKSRMAPIVARIKRAGIHNVQLHSSWESLRNL-QEHFT 301 (429)
Q Consensus 223 ~~~~l~~~~g~~vLD~CAapGGKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~~~~~~~~-~~~fd 301 (429)
...+|+++||++||+..+|.|=-|..||++.. +|+++|+++.=....++|++++|+.||.+...|...... .+.||
T Consensus 64 m~~~L~~~~g~~VLEIGtGsGY~aAvla~l~~---~V~siEr~~~L~~~A~~~L~~lg~~nV~v~~gDG~~G~~~~aPyD 140 (209)
T COG2518 64 MLQLLELKPGDRVLEIGTGSGYQAAVLARLVG---RVVSIERIEELAEQARRNLETLGYENVTVRHGDGSKGWPEEAPYD 140 (209)
T ss_pred HHHHHCCCCCCEEEEECCCCHHHHHHHHHHHC---EEEEEEECHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCC
T ss_conf 99974899998688877783099999999748---499999719999999999997698734999788556887779847
Q ss_pred EEEECCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEC
Q ss_conf 7896275445044444223667249678999999878999999996089838999775
Q gi|254780634|r 302 TVLVDAPCSGTGTWRRRPDIKWRLSQKNLIERTEEQKKILEESAQFVRPEGYLVYITC 359 (429)
Q Consensus 302 ~vl~DaPCSg~G~~rr~Pe~~w~~~~~~~~~~~~lQ~~iL~~a~~~lk~gG~lvYsTC 359 (429)
+|++-|-+.-. |+.+ .+.||+||+||--.=
T Consensus 141 ~I~Vtaaa~~v--------------P~~L--------------l~QL~~gGrlv~PvG 170 (209)
T COG2518 141 RIIVTAAAPEV--------------PEAL--------------LDQLKPGGRLVIPVG 170 (209)
T ss_pred EEEEEECCCCC--------------CHHH--------------HHHCCCCCEEEEEEC
T ss_conf 89995035779--------------9899--------------985065988999985
No 50
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=98.65 E-value=4.6e-07 Score=67.77 Aligned_cols=138 Identities=14% Similarity=0.102 Sum_probs=84.8
Q ss_pred CCCCCEEEECCCCCCHHHHHHHHHHCCCCEEHHHHCCHHHHHHHHHHHHHCCCCCCEEEECCCCC--C-CCCCCCCEEEE
Q ss_conf 66662586013468827999999861688100552498999999999875028860882155434--4-57232467896
Q gi|254780634|r 229 ITNSSQILDFCAGGGGKTLALSMLLNNKGQIHAWDNNKSRMAPIVARIKRAGIHNVQLHSSWESL--R-NLQEHFTTVLV 305 (429)
Q Consensus 229 ~~~g~~vLD~CAapGGKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~~~~~--~-~~~~~fd~vl~ 305 (429)
.+....||...=|-|--..++|..-.+. -.+.+|++..-+..+...+...++.|+.+..+|... . -....+|+|.+
T Consensus 342 ~~k~kv~LEIGFG~Ge~L~~~A~~nP~~-~fIG~Evy~nGva~ll~~i~~~~l~Niri~~~D~~~ll~~lp~~sld~i~i 420 (503)
T PRK01544 342 NEKRKVFLEIGFGMGEHFINQAKMNPDA-LFIGVEVYLNGVANVLKLAGEQNITNFLLFPNNLDLILNDLPNNSLDGIYI 420 (503)
T ss_pred CCCCEEEEEECCCCCHHHHHHHHHCCCC-CEEEEEECHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHCCCCCCCEEEE
T ss_conf 5567089995369879999999968988-889994065669999999998699759987335999998566204041678
Q ss_pred CCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHCHHHHHHHHHHCCCCEEEE
Q ss_conf 2754450444442236672496789999998789999999960898389997758882429998999998579979941
Q gi|254780634|r 306 DAPCSGTGTWRRRPDIKWRLSQKNLIERTEEQKKILEESAQFVRPEGYLVYITCSILPEENIQQINYFLSKNPHFSIDS 384 (429)
Q Consensus 306 DaPCSg~G~~rr~Pe~~w~~~~~~~~~~~~lQ~~iL~~a~~~lk~gG~lvYsTCS~~~~Ene~vv~~fL~~~~~~~~~~ 384 (429)
==| +|.-|=|-. +---+|.+.|..-.+.||+||.+..+|=.-+.. +++-..+++|++|+...
T Consensus 421 lfP---------DPWpKkRH~-----KRRli~~efl~~l~~~Lk~~G~l~~aTD~~~Y~---~~~le~~~~~~~f~~~~ 482 (503)
T PRK01544 421 LFP---------DPWIKNKQK-----KKRIFNKERLKILQDKLKDNGNLVFASDIENYF---YEAIELIQQNGNFEIIN 482 (503)
T ss_pred ECC---------CCCCCCCHH-----HHCCCCHHHHHHHHHHHCCCCEEEEECCCHHHH---HHHHHHHHHCCCCEEEC
T ss_conf 789---------999755322-----001779999999999714698899976788999---99999998679965662
No 51
>pfam01170 UPF0020 Putative RNA methylase family UPF0020. This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains.
Probab=98.65 E-value=3.7e-07 Score=68.37 Aligned_cols=124 Identities=19% Similarity=0.253 Sum_probs=91.6
Q ss_pred CCCCCCCCCCCEEEECCCCCCHHHHHHHHHHCCCCEEHHHHCCHHHHHHHHHHHHHCCCCC-CEEEECCCC-CCCCCCCC
Q ss_conf 2112366666258601346882799999986168810055249899999999987502886-088215543-44572324
Q gi|254780634|r 223 VSNLTAITNSSQILDFCAGGGGKTLALSMLLNNKGQIHAWDNNKSRMAPIVARIKRAGIHN-VQLHSSWES-LRNLQEHF 300 (429)
Q Consensus 223 ~~~~l~~~~g~~vLD~CAapGGKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~-v~~~~~~~~-~~~~~~~f 300 (429)
.+.+.++++|+.|||.|||-|+=.+. |.++.....++++|+++.=++..+.|++++|+.+ |.+...|.. ++...+.|
T Consensus 20 l~~la~~~~g~~vlDP~CGSGtilIE-Aa~~~~~~~~~G~Did~~~v~~A~~N~~~~g~~~~i~~~~~D~~~l~~~~~~~ 98 (171)
T pfam01170 20 MVNLAGWKPGDPLLDPFCGSGTILIE-AALMGANVALYGSDIDRRMVRGARINAEAAGVGDKIEFVQADAADLPLLNGSV 98 (171)
T ss_pred HHHHHCCCCCCEEEECCCCCCHHHHH-HHHHHCCCCCEEEECCHHHHHHHHHHHHHHCCCCCEEEEECCHHHCCCCCCCC
T ss_conf 99985899999788689987899999-99961358953675879999999999998289984699976665387987883
Q ss_pred CEEEECCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCH
Q ss_conf 678962754450444442236672496789999998789999999960898389997758882
Q gi|254780634|r 301 TTVLVDAPCSGTGTWRRRPDIKWRLSQKNLIERTEEQKKILEESAQFVRPEGYLVYITCSILP 363 (429)
Q Consensus 301 d~vl~DaPCSg~G~~rr~Pe~~w~~~~~~~~~~~~lQ~~iL~~a~~~lk~gG~lvYsTCS~~~ 363 (429)
|.|+.|.|== . |. .+-.++.++=.++++.+.+.++ |..||.+.+-..
T Consensus 99 d~Iv~nPPYG---~---------r~--~~~~~~~~ly~~~~~~~~~~~~--g~~~~i~~~~~~ 145 (171)
T pfam01170 99 DTIVTDPPYG---I---------RI--GSKGALEKLYPAFLDEAKRVLR--GRLVFATPEKKD 145 (171)
T ss_pred EEEEECCCCC---C---------CC--CCHHHHHHHHHHHHHHHHHHCC--CCEEEEEECCHH
T ss_conf 1899889820---1---------13--6545699999999999998689--978999968689
No 52
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=98.64 E-value=8.8e-08 Score=72.63 Aligned_cols=88 Identities=18% Similarity=0.247 Sum_probs=74.1
Q ss_pred CCCCCCCCCCCEEEECCCCCCHHHHHHHHHHCCCCEEHHHHCCHHHHHHHHHHHHHCCCCCCEEEECCCCC--CCC--CC
Q ss_conf 21123666662586013468827999999861688100552498999999999875028860882155434--457--23
Q gi|254780634|r 223 VSNLTAITNSSQILDFCAGGGGKTLALSMLLNNKGQIHAWDNNKSRMAPIVARIKRAGIHNVQLHSSWESL--RNL--QE 298 (429)
Q Consensus 223 ~~~~l~~~~g~~vLD~CAapGGKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~~~~~--~~~--~~ 298 (429)
+..+++..++++|||+-||-|+=|+.||. ...+|+++|+++.=+..+++|+++.|+.|+.+...+... ..+ ..
T Consensus 285 a~~~~~~~~~~~vlDlYCGvG~f~l~lA~---~~~~V~gvEi~~~aV~~A~~NA~~n~i~N~~f~~~~ae~~~~~~~~~~ 361 (432)
T COG2265 285 ALEWLELAGGERVLDLYCGVGTFGLPLAK---RVKKVHGVEISPEAVEAAQENAAANGIDNVEFIAGDAEEFTPAWWEGY 361 (432)
T ss_pred HHHHHHCCCCCEEEECCCCCCHHHHHHCC---CCCEEEEEECCHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHCCCC
T ss_conf 99997436997799935588701355312---465799996489999999999997398877999586888865100257
Q ss_pred CCCEEEECCCCCCCH
Q ss_conf 246789627544504
Q gi|254780634|r 299 HFTTVLVDAPCSGTG 313 (429)
Q Consensus 299 ~fd~vl~DaPCSg~G 313 (429)
.||.|++|.|=+|.+
T Consensus 362 ~~d~VvvDPPR~G~~ 376 (432)
T COG2265 362 KPDVVVVDPPRAGAD 376 (432)
T ss_pred CCCEEEECCCCCCCC
T ss_conf 999899899999999
No 53
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=98.63 E-value=5.4e-07 Score=67.30 Aligned_cols=143 Identities=15% Similarity=0.295 Sum_probs=100.8
Q ss_pred CCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHCCCCEEHHHHCCHHHHHHHHHHHHHCCCC-CCEEEECCCCC--CC-
Q ss_conf 654211236666625860134688279999998616881005524989999999998750288-60882155434--45-
Q gi|254780634|r 220 SQIVSNLTAITNSSQILDFCAGGGGKTLALSMLLNNKGQIHAWDNNKSRMAPIVARIKRAGIH-NVQLHSSWESL--RN- 295 (429)
Q Consensus 220 Sql~~~~l~~~~g~~vLD~CAapGGKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~-~v~~~~~~~~~--~~- 295 (429)
|.|.+.+..+....+|||+|||-|.=.+.+|++... .+|+++|+.+.=.+...+|++-.++. .+++...|... +.
T Consensus 33 aiLL~~~~~~~~~~~IlDlGaG~G~l~L~la~r~~~-a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~~ 111 (248)
T COG4123 33 AILLAAFAPVPKKGRILDLGAGNGALGLLLAQRTEK-AKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKAL 111 (248)
T ss_pred HHHHHHHCCCCCCCEEEEECCCCCHHHHHHHCCCCC-CCEEEEEECHHHHHHHHHHHHHCCCHHHEEEEHHHHHHHHHCC
T ss_conf 999976526566876988368946899997455877-8079998179999999998861861340167643088765423
Q ss_pred CCCCCCEEEECCCCCCCHHHHHHHH-----HHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHCHHHH
Q ss_conf 7232467896275445044444223-----66724967899999987899999999608983899977588824299989
Q gi|254780634|r 296 LQEHFTTVLVDAPCSGTGTWRRRPD-----IKWRLSQKNLIERTEEQKKILEESAQFVRPEGYLVYITCSILPEENIQQI 370 (429)
Q Consensus 296 ~~~~fd~vl~DaPCSg~G~~rr~Pe-----~~w~~~~~~~~~~~~lQ~~iL~~a~~~lk~gG~lvYsTCS~~~~Ene~vv 370 (429)
...+||.|++-.|-=-.|.- ++|+ .||.. ...=.+++..|.++||+||++.+.- -++.-.+++
T Consensus 112 ~~~~fD~Ii~NPPyf~~~~~-~~~~~~~~~Ar~e~--------~~~le~~i~~a~~~lk~~G~l~~V~---r~erl~ei~ 179 (248)
T COG4123 112 VFASFDLIICNPPYFKQGSR-LNENPLRAIARHEI--------TLDLEDLIRAAAKLLKPGGRLAFVH---RPERLAEII 179 (248)
T ss_pred CCCCCCEEEECCCCCCCCCC-CCCCHHHHHHHHHH--------CCCHHHHHHHHHHHCCCCCEEEEEE---CHHHHHHHH
T ss_conf 65654789959898787533-48674665566322--------2889999999999746797899995---588889999
Q ss_pred HHHHH
Q ss_conf 99998
Q gi|254780634|r 371 NYFLS 375 (429)
Q Consensus 371 ~~fL~ 375 (429)
+..-.
T Consensus 180 ~~l~~ 184 (248)
T COG4123 180 ELLKS 184 (248)
T ss_pred HHHHH
T ss_conf 99986
No 54
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=98.61 E-value=8.4e-07 Score=65.97 Aligned_cols=129 Identities=18% Similarity=0.265 Sum_probs=103.3
Q ss_pred CCCCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHCCCCEEHHHHCCHHHHHHHHHHHHHCCCCCCEEEECCCCCCCC
Q ss_conf 15565421123666662586013468827999999861688100552498999999999875028860882155434457
Q gi|254780634|r 217 DEGSQIVSNLTAITNSSQILDFCAGGGGKTLALSMLLNNKGQIHAWDNNKSRMAPIVARIKRAGIHNVQLHSSWESLRNL 296 (429)
Q Consensus 217 D~aSql~~~~l~~~~g~~vLD~CAapGGKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~~~~~~~~ 296 (429)
|.+|++...-+++.++.+|||++||-|-=.+.++.... ...|+-+|++..=++..++|++-.++.|+++...+.. .+.
T Consensus 144 D~GS~lLl~~l~~~~~~~vlDlGCG~Gvlg~~la~~~p-~~~vtmvDvn~~Av~~ar~Nl~~N~~~~~~v~~s~~~-~~v 221 (300)
T COG2813 144 DKGSRLLLETLPPDLGGKVLDLGCGYGVLGLVLAKKSP-QAKLTLVDVNARAVESARKNLAANGVENTEVWASNLY-EPV 221 (300)
T ss_pred CHHHHHHHHHCCCCCCCCEEEECCCCCHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHCCCCCCEEEEECCC-CCC
T ss_conf 83889999737755699688707884299999998689-8728998266999999887699739876379981244-665
Q ss_pred CCCCCEEEECCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHH
Q ss_conf 23246789627544504444422366724967899999987899999999608983899977588824
Q gi|254780634|r 297 QEHFTTVLVDAPCSGTGTWRRRPDIKWRLSQKNLIERTEEQKKILEESAQFVRPEGYLVYITCSILPE 364 (429)
Q Consensus 297 ~~~fd~vl~DaPCSg~G~~rr~Pe~~w~~~~~~~~~~~~lQ~~iL~~a~~~lk~gG~lvYsTCS~~~~ 364 (429)
.++||.|+.-.|=.-- ..-...+=.+|+..|.+.|++||.|--..=...+-
T Consensus 222 ~~kfd~IisNPPfh~G-----------------~~v~~~~~~~ii~~A~~~L~~gGeL~iVan~~l~y 272 (300)
T COG2813 222 EGKFDLIISNPPFHAG-----------------KAVVHSLAQEIIAAAARHLKPGGELWIVANRHLPY 272 (300)
T ss_pred CCCCCEEEECCCCCCC-----------------CCHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCH
T ss_conf 4400689848884677-----------------10167889999999997604597799997588896
No 55
>pfam09445 Methyltransf_15 RNA cap guanine-N2 methyltransferase. RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe Tgs1 and Giardia lamblia Tgs2 catalyse methylation of the exocyclic N2 amine of 7-methylguanosine.
Probab=98.61 E-value=2.3e-07 Score=69.81 Aligned_cols=108 Identities=19% Similarity=0.249 Sum_probs=81.0
Q ss_pred CEEEECCCCCCHHHHHHHHHHCCCCEEHHHHCCHHHHHHHHHHHHHCCCC-CCEEEECCCC-----CCCCCCCCCEEEEC
Q ss_conf 25860134688279999998616881005524989999999998750288-6088215543-----44572324678962
Q gi|254780634|r 233 SQILDFCAGGGGKTLALSMLLNNKGQIHAWDNNKSRMAPIVARIKRAGIH-NVQLHSSWES-----LRNLQEHFTTVLVD 306 (429)
Q Consensus 233 ~~vLD~CAapGGKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~-~v~~~~~~~~-----~~~~~~~fd~vl~D 306 (429)
..|||+|||-||-|.++|... .+|+|+|+++.+++..++|++-.|+. +|.+...|.. +.....+||.|++|
T Consensus 2 ~ivlD~fcG~Ggn~I~fA~~~---~~Vi~vDi~~~~l~~A~~NA~iyGV~drI~fi~gD~f~~~~~l~~~~~~~DvVf~s 78 (165)
T pfam09445 2 RIILDVFCGAGGNTIQFANVF---CSVIGIDINPEHLACAQHNAEVYGVSDRIWFILGDWFELLAKLKFGKIPYDCVFLS 78 (165)
T ss_pred CEEEECCCCCCHHHHHHHHHC---CEEEEEECCHHHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHCCCCCCEEEEC
T ss_conf 799993778079999999758---98999979899999999989983987317999775999978876358875589977
Q ss_pred CCCCCCHHHHHH-HHHHHHCCHHHHHHHHHHHHHHHHH
Q ss_conf 754450444442-2366724967899999987899999
Q gi|254780634|r 307 APCSGTGTWRRR-PDIKWRLSQKNLIERTEEQKKILEE 343 (429)
Q Consensus 307 aPCSg~G~~rr~-Pe~~w~~~~~~~~~~~~lQ~~iL~~ 343 (429)
.|=-|-+-.+.. -|+.-.++|-++.++.+.=.+|-.+
T Consensus 79 PPWGGp~Y~~~~~fdl~~~~~p~~~~~l~~~~~~it~n 116 (165)
T pfam09445 79 PPWGGPSYKRQNVYDLEKKLKPYGLYQLLKESTEISKN 116 (165)
T ss_pred CCCCCCCCCCCCCCCHHHCCCCCCHHHHHHHHHHHCCC
T ss_conf 99999885656766877726877999999999863625
No 56
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=98.58 E-value=4.1e-07 Score=68.13 Aligned_cols=147 Identities=21% Similarity=0.326 Sum_probs=97.9
Q ss_pred CCCCCCCCCCCEEEECCCCCCHHHHHHHHHHCCCCEEHHHHCCHHHHHHHHHHHHHCCCCCCEEEECCCC----------
Q ss_conf 2112366666258601346882799999986168810055249899999999987502886088215543----------
Q gi|254780634|r 223 VSNLTAITNSSQILDFCAGGGGKTLALSMLLNNKGQIHAWDNNKSRMAPIVARIKRAGIHNVQLHSSWES---------- 292 (429)
Q Consensus 223 ~~~~l~~~~g~~vLD~CAapGGKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~~~~---------- 292 (429)
+..++++..++ |||++||-|+=|+.||... ++|+++|+++.=++.+++|+++.|+.|+++...+..
T Consensus 200 a~~~~~~~~~~-vlDLYcG~Gtfsl~LA~~~---~~V~gVE~~~~aV~~A~~NA~~N~i~N~~fi~~~a~~~~~~~~~~~ 275 (363)
T PRK05031 200 ALDATKGSKGD-LLELYCGNGNFTLALARNF---RRVLATEISKPSVAAAQYNIAANGIDNVQIIRMSAEEFTQAMNGVR 275 (363)
T ss_pred HHHHHHCCCCC-EEEEECCCCHHHHHHHHHC---CEEEEEECCHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHCCC
T ss_conf 99976138982-8986058664269988626---8799995389999999999998699864999658999999873431
Q ss_pred ----CC---CCCCCCCEEEECCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHH
Q ss_conf ----44---57232467896275445044444223667249678999999878999999996089838999775888242
Q gi|254780634|r 293 ----LR---NLQEHFTTVLVDAPCSGTGTWRRRPDIKWRLSQKNLIERTEEQKKILEESAQFVRPEGYLVYITCSILPEE 365 (429)
Q Consensus 293 ----~~---~~~~~fd~vl~DaPCSg~G~~rr~Pe~~w~~~~~~~~~~~~lQ~~iL~~a~~~lk~gG~lvYsTCS~~~~E 365 (429)
+. .....||.|++|.|=+|.+- + +.++ +. + ++ ++||.-|-...--
T Consensus 276 ~~~~l~~~~~~~~~~d~vvvDPPR~Gl~~-------------~-~~~~-------i~---~-~~---rIVYVSCnP~Tla 327 (363)
T PRK05031 276 EFRRLKGIDLKSYNFSTIFVDPPRAGLDE-------------E-TLKL-------VQ---N-YE---RILYISCNPETLK 327 (363)
T ss_pred HHHCCCCCCCCCCCCCEEEECCCCCCCCH-------------H-HHHH-------HH---C-CC---EEEEEECCHHHHH
T ss_conf 01001246644355864898999888749-------------9-9999-------83---6-89---0999928989999
Q ss_pred CHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCEEEEEEEEEC
Q ss_conf 999899999857997994143002223455555555676984998044798621589999626
Q gi|254780634|r 366 NIQQINYFLSKNPHFSIDSIIDDWNQLYDLKNHPSLFIENGCCVLTPFLTNTDGFFFCRLKRH 428 (429)
Q Consensus 366 ne~vv~~fL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~dGff~a~l~k~ 428 (429)
= -++ .|.+ ++++..+. .+=++||.+..+ =+|+|+||
T Consensus 328 R--Dl~-~L~~--~y~l~~v~--------------------~vDmFPqT~HvE--~valL~rk 363 (363)
T PRK05031 328 E--NLE-TLSQ--THKVERFA--------------------LFDQFPYTHHME--CGVLLEKK 363 (363)
T ss_pred H--HHH-HHHH--CCEEEEEE--------------------EECCCCCCCCEE--EEEEEEEC
T ss_conf 9--999-9874--46588999--------------------842699997278--99999809
No 57
>pfam02384 N6_Mtase N-6 DNA Methylase. Restriction-modification (R-M) systems protect a bacterial cell against invasion of foreign DNA by endonucleolytic cleavage of DNA that lacks a site specific modification. The R-M system is a complex containing three polypeptides: M (this family), S (pfam01420), and R. This family consists of N-6 adenine-specific DNA methylase EC:2.1.1.72 from Type I and Type IC restriction systems. These methylases have the same sequence specificity as their corresponding restriction enzymes.
Probab=98.52 E-value=6.5e-07 Score=66.76 Aligned_cols=168 Identities=15% Similarity=0.175 Sum_probs=102.9
Q ss_pred CEEEEECCCCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHCC------CCEEHHHHCCHHHHHHHHHHHHHCCCC--
Q ss_conf 548984155654211236666625860134688279999998616------881005524989999999998750288--
Q gi|254780634|r 211 GWFEIQDEGSQIVSNLTAITNSSQILDFCAGGGGKTLALSMLLNN------KGQIHAWDNNKSRMAPIVARIKRAGIH-- 282 (429)
Q Consensus 211 G~~~VQD~aSql~~~~l~~~~g~~vLD~CAapGGKt~~la~~~~~------~g~i~A~D~~~~Rl~~l~~~~~r~g~~-- 282 (429)
|.|.--..-+.+.+.+++|++|++|+|.|||-||=-+...+.+.. .-.++..|+++.-....+-|+-=.|+.
T Consensus 26 GeffTPr~Vv~lmv~ll~p~~~~~V~DPacGtGgfLi~a~~~i~~~~~~~~~~~i~G~E~~~~~~~la~mNm~lhgi~~~ 105 (312)
T pfam02384 26 GEFYTPREVSKLIVELLEPKPGESIYDPACGSGGFLIQADKFVKSHDGDTNDISIYGQELNPTTYRLARMNMILHGIEYN 105 (312)
T ss_pred CEECCCHHHHHHHHHHHCCCCCCEEECCCCCCCHHHHHHHHHHHHHCCCCCCCEEECCCCCHHHHHHHHHHHHHHCCCCC
T ss_conf 63588789999999982899999882168773378999999999843785565563688998999999999998479887
Q ss_pred CCEEEECCCCCC---CCCCCCCEEEECCCCCCCHHHHHHH--HHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 608821554344---5723246789627544504444422--36672496789999998789999999960898389997
Q gi|254780634|r 283 NVQLHSSWESLR---NLQEHFTTVLVDAPCSGTGTWRRRP--DIKWRLSQKNLIERTEEQKKILEESAQFVRPEGYLVYI 357 (429)
Q Consensus 283 ~v~~~~~~~~~~---~~~~~fd~vl~DaPCSg~G~~rr~P--e~~w~~~~~~~~~~~~lQ~~iL~~a~~~lk~gG~lvYs 357 (429)
+..+...+.... ....+||.||...|=++..--.+.. +-+|+.. .+..-..-+..-+.++...|++||+++-.
T Consensus 106 ~~~i~~gdsl~~~~~~~~~kfD~IlsNPPFg~k~~~~~~~~~~~~~~~~--~~~~~~~~e~~Fiqh~l~~Lk~~GraaiV 183 (312)
T pfam02384 106 DFGIRHGDTLLSPKFEEDKKFDVVVANPPFNQKWDANDNLENDPRFRAY--GVPPKSNADFAFLQHIIYHLSPNGRAAVV 183 (312)
T ss_pred CCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCHHCC--CCCCCCCHHHHHHHHHHHHCCCCCEEEEE
T ss_conf 4552147765576766545511898378646676654321027211036--87888744299999999856999769999
Q ss_pred E--CCCCHHHCHHHHHHHHHHCCCC
Q ss_conf 7--5888242999899999857997
Q gi|254780634|r 358 T--CSILPEENIQQINYFLSKNPHF 380 (429)
Q Consensus 358 T--CS~~~~Ene~vv~~fL~~~~~~ 380 (429)
. -.++..-.|..|+..|-++...
T Consensus 184 lp~g~Lf~~~~e~~iR~~lle~~~l 208 (312)
T pfam02384 184 LPNGVLFRGGAEGDIRKALVEKDLI 208 (312)
T ss_pred ECCCCCCCCCHHHHHHHHHHHCCCE
T ss_conf 5582310465088999999975976
No 58
>PRK09329 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=98.50 E-value=2.6e-06 Score=62.60 Aligned_cols=142 Identities=15% Similarity=0.155 Sum_probs=98.8
Q ss_pred CCEEEECCCCCCHHHHHHHHHHCCCCEEHHHHCCHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCCEEEECCCCCC
Q ss_conf 62586013468827999999861688100552498999999999875028860882155434457232467896275445
Q gi|254780634|r 232 SSQILDFCAGGGGKTLALSMLLNNKGQIHAWDNNKSRMAPIVARIKRAGIHNVQLHSSWESLRNLQEHFTTVLVDAPCSG 311 (429)
Q Consensus 232 g~~vLD~CAapGGKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~~~~~~~~~~~fd~vl~DaPCSg 311 (429)
...+||+|+|.|-=.+.|+....+ ..++|+|+++.=++..++|+++.++ ++.+...+.. .+...+||.|+.-.|.=.
T Consensus 110 ~~~~lDlGtGSG~I~isla~~~p~-~~v~avDiS~~Al~~A~~Na~~~~~-~v~~~~~dl~-~~~~~~~DlIvSNPPYI~ 186 (285)
T PRK09329 110 IQTFYDVCCGSGCIGLAIKKHCPH-VHVVLSDICPQALAVAKSNAKSNGL-DVDFLLGDLF-APFSRPADAFVCNPPYLS 186 (285)
T ss_pred CCEEEEECCCHHHHHHHHHHHCCC-CEEEHHHCCHHHHHHHHHHHHHCCC-CEEEEECCHH-HHHCCCCCEEEECCCCCC
T ss_conf 777888454179999999985898-6588033769999999999997299-4799976300-333476788998999888
Q ss_pred CHHHH-HHHHHHHHCCHHHH----HHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHCHHHHHHHHHHCCCCEE
Q ss_conf 04444-42236672496789----9999987899999999608983899977588824299989999985799799
Q gi|254780634|r 312 TGTWR-RRPDIKWRLSQKNL----IERTEEQKKILEESAQFVRPEGYLVYITCSILPEENIQQINYFLSKNPHFSI 382 (429)
Q Consensus 312 ~G~~r-r~Pe~~w~~~~~~~----~~~~~lQ~~iL~~a~~~lk~gG~lvYsTCS~~~~Ene~vv~~fL~~~~~~~~ 382 (429)
+..+. -.||++-. -|..- ..=-..=+.|+..+..+|+|||.++- =+.....+. |..+++.+ +|..
T Consensus 187 ~~e~~~l~~eV~~~-EP~~AL~gg~dGl~~~r~i~~~a~~~L~~~G~l~~---Eig~~Q~~~-v~~l~~~~-g~~~ 256 (285)
T PRK09329 187 FKEFFHVDPEVRCH-EPWKALVGGSSGLEFYQRIAQELPKILVPGGVGWL---EIGSSQGES-VKKIFAKH-GISG 256 (285)
T ss_pred HHHHHHCCHHHHHC-CCHHHHHCCCCHHHHHHHHHHHHHHHCCCCCEEEE---EECCHHHHH-HHHHHHHC-CCCC
T ss_conf 44454498755436-70998847973899999999999996004988999---968548999-99999966-9964
No 59
>KOG1540 consensus
Probab=98.50 E-value=1.4e-06 Score=64.45 Aligned_cols=140 Identities=17% Similarity=0.285 Sum_probs=104.9
Q ss_pred CCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHCCC-----CEEHHHHCCHHHHHHHHHHHHHCCCCC---CEEEECCC-C
Q ss_conf 42112366666258601346882799999986168-----810055249899999999987502886---08821554-3
Q gi|254780634|r 222 IVSNLTAITNSSQILDFCAGGGGKTLALSMLLNNK-----GQIHAWDNNKSRMAPIVARIKRAGIHN---VQLHSSWE-S 292 (429)
Q Consensus 222 l~~~~l~~~~g~~vLD~CAapGGKt~~la~~~~~~-----g~i~A~D~~~~Rl~~l~~~~~r~g~~~---v~~~~~~~-~ 292 (429)
+.+..|+|..|+++||+|.|-|--|+-|....+++ ++|+.+|++++-|...+++.++.++.. +.....|+ .
T Consensus 91 ~~v~~L~p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dAE~ 170 (296)
T KOG1540 91 MFVSKLGPGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGDAED 170 (296)
T ss_pred HHHHCCCCCCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCCCCEEEEECCCCC
T ss_conf 76621587778758983477525677798761134577776179993898999999877751597768716999477010
Q ss_pred CCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHCHHHHHH
Q ss_conf 44572324678962754450444442236672496789999998789999999960898389997758882429998999
Q gi|254780634|r 293 LRNLQEHFTTVLVDAPCSGTGTWRRRPDIKWRLSQKNLIERTEEQKKILEESAQFVRPEGYLVYITCSILPEENIQQINY 372 (429)
Q Consensus 293 ~~~~~~~fd~vl~DaPCSg~G~~rr~Pe~~w~~~~~~~~~~~~lQ~~iL~~a~~~lk~gG~lvYsTCS~~~~Ene~vv~~ 372 (429)
++.....||..-+ +-| ||- +...|+ -|++|.+.|||||+.. |=-++.+|.+.+++
T Consensus 171 LpFdd~s~D~yTi-----afG-IRN---------------~th~~k-~l~EAYRVLKpGGrf~---cLeFskv~~~~l~~ 225 (296)
T KOG1540 171 LPFDDDSFDAYTI-----AFG-IRN---------------VTHIQK-ALREAYRVLKPGGRFS---CLEFSKVENEPLKW 225 (296)
T ss_pred CCCCCCCCEEEEE-----ECC-EEC---------------CCCHHH-HHHHHHHHCCCCCEEE---EEECCCCCCHHHHH
T ss_conf 8999775115888-----421-114---------------787789-9999987527786799---99735454077899
Q ss_pred HHHHCCCCEEEECCC
Q ss_conf 998579979941430
Q gi|254780634|r 373 FLSKNPHFSIDSIID 387 (429)
Q Consensus 373 fL~~~~~~~~~~~~~ 387 (429)
|-.... |.++|...
T Consensus 226 fy~~ys-f~VlpvlG 239 (296)
T KOG1540 226 FYDQYS-FDVLPVLG 239 (296)
T ss_pred HHHHHH-HHHHCHHH
T ss_conf 997122-23211055
No 60
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA; InterPro: IPR001566 This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA .; GO: 0003723 RNA binding, 0008173 RNA methyltransferase activity, 0006396 RNA processing.
Probab=98.49 E-value=1.6e-07 Score=70.88 Aligned_cols=108 Identities=19% Similarity=0.258 Sum_probs=85.0
Q ss_pred CCCCCCCCCCEEEECCCCCCHHHHHHHHHHCCCCEEHHHHCCHHHHHHHHHHHHHCCCCCCEEEECCC--CCCCC---CC
Q ss_conf 11236666625860134688279999998616881005524989999999998750288608821554--34457---23
Q gi|254780634|r 224 SNLTAITNSSQILDFCAGGGGKTLALSMLLNNKGQIHAWDNNKSRMAPIVARIKRAGIHNVQLHSSWE--SLRNL---QE 298 (429)
Q Consensus 224 ~~~l~~~~g~~vLD~CAapGGKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~~~--~~~~~---~~ 298 (429)
-.+|+.++.++|+|+-||=|+=|+-||...+ .++++|+.+.-++..++|+++.|+.||+....+. .++.+ ..
T Consensus 287 ~~~l~Lqg~e~V~DayCG~GtftLpLA~qak---~v~G~E~v~e~v~~a~~NAe~Ng~~N~~F~~g~~E~~~p~~~~e~~ 363 (434)
T TIGR00479 287 LEALELQGEEKVVDAYCGVGTFTLPLAKQAK---SVVGVEVVPESVEDAKRNAELNGIANVEFLAGTLETVLPKQPWEGI 363 (434)
T ss_pred HHHHHCCCCCEEEEEECCCCCCHHHHHHCCC---EEEEEECCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCC
T ss_conf 9997159865578631575520044440121---8888714376789998888860353201333123211014422267
Q ss_pred CCCEEEECCCCCC-C-HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCC
Q ss_conf 2467896275445-0-44444223667249678999999878999999996089838999775888
Q gi|254780634|r 299 HFTTVLVDAPCSG-T-GTWRRRPDIKWRLSQKNLIERTEEQKKILEESAQFVRPEGYLVYITCSIL 362 (429)
Q Consensus 299 ~fd~vl~DaPCSg-~-G~~rr~Pe~~w~~~~~~~~~~~~lQ~~iL~~a~~~lk~gG~lvYsTCS~~ 362 (429)
.||.||||+|=+| . ++| ..+.+ +||- ++||.-|-.-
T Consensus 364 ~~D~~llDPPR~GCa~~~L---------------~~I~~------------~kP~-rivYVSCNP~ 401 (434)
T TIGR00479 364 SPDVVLLDPPRKGCAAEVL---------------RTIIK------------LKPK-RIVYVSCNPA 401 (434)
T ss_pred CCCEEEECCCCCCCHHHHH---------------HHHHH------------CCCE-EEEEEECCCH
T ss_conf 7898888888987458999---------------98862------------0770-5999844853
No 61
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=98.49 E-value=1.8e-06 Score=63.77 Aligned_cols=139 Identities=14% Similarity=0.106 Sum_probs=96.7
Q ss_pred CEEEEECCCCCCCCCCC---------CCCCCCEEEECCCCCCHHHHHHHHHHCCCCEEHHHHCCHHHHHHHHHHHHHCCC
Q ss_conf 54898415565421123---------666662586013468827999999861688100552498999999999875028
Q gi|254780634|r 211 GWFEIQDEGSQIVSNLT---------AITNSSQILDFCAGGGGKTLALSMLLNNKGQIHAWDNNKSRMAPIVARIKRAGI 281 (429)
Q Consensus 211 G~~~VQD~aSql~~~~l---------~~~~g~~vLD~CAapGGKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~ 281 (429)
|...-.|.+.-+-..-+ ...+|+.|+||.||=|-=|+.+|-.-. -.|+|+|+++.=.+-|++|++..++
T Consensus 159 G~~f~vD~~Kv~Fsprl~~ER~Rva~~v~~GE~V~DmFAGVGpfsi~~Ak~g~--~~V~A~diNP~A~~~L~eNi~LN~v 236 (341)
T COG2520 159 GCRFKVDVAKVYFSPRLSTERARVAELVKEGETVLDMFAGVGPFSIPIAKKGR--PKVYAIDINPDAVEYLKENIRLNKV 236 (341)
T ss_pred CEEEEECHHHEEECCCCHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHCCC--CEEEEEECCHHHHHHHHHHHHHCCC
T ss_conf 88999724784877874478999986306998899835786540124665478--6399994598999999999985576
Q ss_pred CC-CEEEECCCCCCCCC-CCCCEEEECCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEC
Q ss_conf 86-08821554344572-32467896275445044444223667249678999999878999999996089838999775
Q gi|254780634|r 282 HN-VQLHSSWESLRNLQ-EHFTTVLVDAPCSGTGTWRRRPDIKWRLSQKNLIERTEEQKKILEESAQFVRPEGYLVYITC 359 (429)
Q Consensus 282 ~~-v~~~~~~~~~~~~~-~~fd~vl~DaPCSg~G~~rr~Pe~~w~~~~~~~~~~~~lQ~~iL~~a~~~lk~gG~lvYsTC 359 (429)
.+ +.....|....... +.||+|+.--|= .+.+.|..|..++++||.+.|=+-
T Consensus 237 ~~~v~~i~gD~rev~~~~~~aDrIim~~p~--------------------------~a~~fl~~A~~~~k~~g~iHyy~~ 290 (341)
T COG2520 237 EGRVEPILGDAREVAPELGVADRIIMGLPK--------------------------SAHEFLPLALELLKDGGIIHYYEF 290 (341)
T ss_pred CCEEEEEECCHHHHHHCCCCCCEEEECCCC--------------------------CCHHHHHHHHHHHHCCCEEEEEEC
T ss_conf 551567966488850204667889838987--------------------------202338999998514867999962
Q ss_pred CCCHHH---CHHHHHHHHHHC
Q ss_conf 888242---999899999857
Q gi|254780634|r 360 SILPEE---NIQQINYFLSKN 377 (429)
Q Consensus 360 S~~~~E---ne~vv~~fL~~~ 377 (429)
.-..+. .+..++.+..+.
T Consensus 291 ~~e~~~~~~~~~~i~~~~~~~ 311 (341)
T COG2520 291 VPEDDIEERPEKRIKSAARKG 311 (341)
T ss_pred CCHHHCCCCHHHHHHHHHHHC
T ss_conf 243411112599999987643
No 62
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=98.43 E-value=2.4e-06 Score=62.92 Aligned_cols=105 Identities=14% Similarity=0.234 Sum_probs=80.5
Q ss_pred CCCCCCCCEEEECCCCCCHHHHHHHHHHCCCCEEHHHHCCHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCCEEEE
Q ss_conf 23666662586013468827999999861688100552498999999999875028860882155434457232467896
Q gi|254780634|r 226 LTAITNSSQILDFCAGGGGKTLALSMLLNNKGQIHAWDNNKSRMAPIVARIKRAGIHNVQLHSSWESLRNLQEHFTTVLV 305 (429)
Q Consensus 226 ~l~~~~g~~vLD~CAapGGKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~~~~~~~~~~~fd~vl~ 305 (429)
.++++++++|||+.||+|.=|..|+++.. .++|+.+|.|+.-+...+++. .++++...|.......+.||.|+-
T Consensus 26 ~l~~~~~~~vlDlGCG~G~~t~~l~~r~p-~a~v~GiD~S~~Ml~~Ar~~~-----~~~~f~~~D~~~~~~~~~~D~ifS 99 (252)
T PRK01683 26 RVPLENVEYVADLGCGPGNSTALLHQRWP-AARITGIDSSPAMLAEARQAL-----PDCQFVEADIRNWQPEQALDLIYA 99 (252)
T ss_pred CCCCCCCCEEEEECCCCCHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHC-----CCCEEEECCHHCCCCCCCCCEEEE
T ss_conf 18888999899937749899999999779-987999989899999999758-----998387250420787678788956
Q ss_pred CCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEE
Q ss_conf 27544504444422366724967899999987899999999608983899977
Q gi|254780634|r 306 DAPCSGTGTWRRRPDIKWRLSQKNLIERTEEQKKILEESAQFVRPEGYLVYIT 358 (429)
Q Consensus 306 DaPCSg~G~~rr~Pe~~w~~~~~~~~~~~~lQ~~iL~~a~~~lk~gG~lvYsT 358 (429)
-| + .-|-.. +..++.+.++.|+|||.|+-=.
T Consensus 100 Na------a------lhW~~d----------~~~~~~~~~~~L~PGG~la~Q~ 130 (252)
T PRK01683 100 NA------S------LQWLPD----------HYELFPHLVSLLAPQGVLAVQM 130 (252)
T ss_pred EE------E------HHHCCC----------HHHHHHHHHHHCCCCCEEEEEC
T ss_conf 10------0------450787----------7999999998248787999988
No 63
>pfam01029 NusB NusB family. The NusB protein is involved in the regulation of rRNA biosynthesis by transcriptional antitermination.
Probab=98.41 E-value=5.3e-06 Score=60.54 Aligned_cols=105 Identities=14% Similarity=0.061 Sum_probs=73.8
Q ss_pred HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCC---C--------HHH
Q ss_conf 68999999999999956997899999999868588955799999999999975899999705689---6--------799
Q gi|254780634|r 4 GGQIAAAIEILKDIRTHKKPITNSLKDWGMSHRFAGSSDRASISNIVHDVLRKYLSSAYIMDSDD---P--------ESL 72 (429)
Q Consensus 4 ~aR~~AA~eiL~~v~~~~~~ad~~L~~~~~~~r~lgs~DR~~i~~lvyg~lR~~~~ld~il~~~~---~--------r~~ 72 (429)
.||. .|+++|.++...+.+++.++..+.. + .++++|++|+++++||++|++..+|+++++.. + +.+
T Consensus 2 ~aR~-~a~q~L~~~~~~~~~~~~~l~~~~~-~-~~~~~d~~~~~~l~~gv~~~~~~id~~i~~~~~~~~~~~l~~~~~~i 78 (126)
T pfam01029 2 NARE-LALQALYAVEERGASLNELLDKLLE-A-DLDERDRAFATELVYGVLRNLEELDALIAKLLENWPLERLDPVDRAI 78 (126)
T ss_pred HHHH-HHHHHHHHHHHCCCCHHHHHHHHHH-C-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCHHHHHH
T ss_conf 4999-9999999998609899999999987-1-89889999999999999998999999999885599966659999999
Q ss_pred HHHHHH--H-HCCCCHHHHHHHHHHHHHC-CCCCHHHHHHHHH
Q ss_conf 999999--7-4388989999988543303-4332046775442
Q gi|254780634|r 73 VYAVIM--K-DWDIPWEKMLSMLKEDLFS-PPLPKESVIKSFH 111 (429)
Q Consensus 73 ~~~~l~--~-~~~~~~~~~v~~~~~~~~~-~~~~~~~~~~~~~ 111 (429)
+...++ . ...+|.+.++++.++.... .......+++++.
T Consensus 79 Lr~a~~El~~~~~~p~~~~InE~v~lak~~~~~~~~~fvNaVL 121 (126)
T pfam01029 79 LRLAAYELLYLDDIPPHVAINEAVELAKKFGGEKSAGFVNGVL 121 (126)
T ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHH
T ss_conf 9999999985789982445899999999877886430289998
No 64
>pfam01728 FtsJ FtsJ-like methyltransferase. This family consists of FtsJ from various bacterial and archaeal sources FtsJ is a methyltransferase, but actually has no effect on cell division. FtsJ's substrate is the 23S rRNA. The 1.5 A crystal structure of FtsJ in complex with its cofactor S-adenosylmethionine revealed that FtsJ has a methyltransferase fold. This family also includes the N terminus of flaviviral NS5 protein. It has been hypothesized that the N-terminal domain of NS5 is a methyltransferase involved in viral RNA capping.
Probab=98.40 E-value=8.4e-06 Score=59.17 Aligned_cols=128 Identities=20% Similarity=0.149 Sum_probs=75.3
Q ss_pred CCCCEEEECCCCCCHHHHHHHHHHCCCCEEHHHHCCHHHHHHHHHHHHHCCCCCCEEEECCCC--------CCCCCCCCC
Q ss_conf 666258601346882799999986168810055249899999999987502886088215543--------445723246
Q gi|254780634|r 230 TNSSQILDFCAGGGGKTLALSMLLNNKGQIHAWDNNKSRMAPIVARIKRAGIHNVQLHSSWES--------LRNLQEHFT 301 (429)
Q Consensus 230 ~~g~~vLD~CAapGGKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~~~~--------~~~~~~~fd 301 (429)
.++..|||+||||||=|-.+.+... +++|+|+|+.+-. ...++.....|.. .....++||
T Consensus 20 ~~~~~vlDLg~aPGgwsq~~~~~~~-~~~v~~vDl~~~~-----------~~~~~~~i~gDi~~~~~~~~i~~~~~~~~D 87 (176)
T pfam01728 20 PGGKTVLDLGAAPGGFSQVLLERGA-KGRVVAVDLGPMK-----------PIQGVTFLRGDITDPETLEKLLELLPGKVD 87 (176)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHCC-CCEEEEEECCCCC-----------CCCCCEEECCCCCCHHHHHHHHHHCCCCCC
T ss_conf 7999999968999769999998566-8739999734465-----------677845651676687899999997399846
Q ss_pred EEEECC--CCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHCHHHHHHHHHHCCC
Q ss_conf 789627--544504444422366724967899999987899999999608983899977588824299989999985799
Q gi|254780634|r 302 TVLVDA--PCSGTGTWRRRPDIKWRLSQKNLIERTEEQKKILEESAQFVRPEGYLVYITCSILPEENIQQINYFLSKNPH 379 (429)
Q Consensus 302 ~vl~Da--PCSg~G~~rr~Pe~~w~~~~~~~~~~~~lQ~~iL~~a~~~lk~gG~lvYsTCS~~~~Ene~vv~~fL~~~~~ 379 (429)
.|+.|. +|||. ++- ...... .|=...+.-|...|++||.+|--+..-.. .+.+.+..+-.....
T Consensus 88 lV~sD~a~~~~g~----~~~------d~~~s~---~L~~~~l~~a~~~L~~gG~fv~K~f~~~~-~~~~l~~~l~~~F~~ 153 (176)
T pfam01728 88 LVLCDGAPNVSGL----ENT------DSFISL---RLVLAALLLALEVLRPGGNFVVKLFKGFE-FSVELLYKLKKGFEK 153 (176)
T ss_pred EEEECCCCCCCCC----CCH------HHHHHH---HHHHHHHHHHHHHHCCCCEEEEEEEECCC-CHHHHHHHHHHCCCE
T ss_conf 8973366565677----334------789999---99999999999982437639999982787-649999999831788
Q ss_pred CEEE
Q ss_conf 7994
Q gi|254780634|r 380 FSID 383 (429)
Q Consensus 380 ~~~~ 383 (429)
+.+.
T Consensus 154 v~~~ 157 (176)
T pfam01728 154 VGIF 157 (176)
T ss_pred EEEE
T ss_conf 9998
No 65
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=98.35 E-value=2.3e-05 Score=56.16 Aligned_cols=143 Identities=15% Similarity=0.225 Sum_probs=97.9
Q ss_pred HHCCCEEEEECCCCCCCCCCCC--CCCCCEEEECCCCCCHHHHHHHHHHCCCCEEHHHHCCHHHHHHHHHHHHHCCCCCC
Q ss_conf 3126548984155654211236--66662586013468827999999861688100552498999999999875028860
Q gi|254780634|r 207 TFQRGWFEIQDEGSQIVSNLTA--ITNSSQILDFCAGGGGKTLALSMLLNNKGQIHAWDNNKSRMAPIVARIKRAGIHNV 284 (429)
Q Consensus 207 ~f~~G~~~VQD~aSql~~~~l~--~~~g~~vLD~CAapGGKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v 284 (429)
+|-.|. -+..+++..+|. ..+|++|||+.+|.|-=+ ||+..-+...|+|+|+++.=++..++|+++.|+.+.
T Consensus 140 AFGTG~----H~TT~lcl~~l~~~~~~~~~vLDvG~GSGILa--IaA~klGa~~v~a~DiD~~Av~~a~eN~~lN~v~~~ 213 (298)
T PRK00517 140 AFGTGT----HPTTRLCLEWLEKLVLPGKTVLDVGCGSGILA--IAAAKLGAKPVLAIDIDPQAVEAARENAELNGVDDR 213 (298)
T ss_pred CCCCCC----CHHHHHHHHHHHHHCCCCCEEEEECCCCHHHH--HHHHHCCCCEEEEEECCHHHHHHHHHHHHHCCCCCC
T ss_conf 456777----74799999999843546886887157706999--999974998499998989999999999998699842
Q ss_pred E-EEECCCCCCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCH
Q ss_conf 8-821554344572324678962754450444442236672496789999998789999999960898389997758882
Q gi|254780634|r 285 Q-LHSSWESLRNLQEHFTTVLVDAPCSGTGTWRRRPDIKWRLSQKNLIERTEEQKKILEESAQFVRPEGYLVYITCSILP 363 (429)
Q Consensus 285 ~-~~~~~~~~~~~~~~fd~vl~DaPCSg~G~~rr~Pe~~w~~~~~~~~~~~~lQ~~iL~~a~~~lk~gG~lvYsTCS~~~ 363 (429)
. +...+ .....++||.|+.- | ++..-..+.....+.|+|||+|+-|= |..
T Consensus 214 ~~~~~~~--~~~~~~~~DlvvAN--------I-----------------la~vl~~l~~~~~~~l~~~G~lilSG--Il~ 264 (298)
T PRK00517 214 LELYLPE--DQPLEGKADVIVAN--------I-----------------LANPLIELAPDLAALVKPGGRLILSG--ILA 264 (298)
T ss_pred EEEECCC--CCCCCCCCCEEEEE--------C-----------------CHHHHHHHHHHHHHHHCCCCEEEEEC--CCH
T ss_conf 6896166--43446764689973--------1-----------------58999999999999738997999927--848
Q ss_pred HHCHHHHHHHHHHCCCCEEEECC
Q ss_conf 42999899999857997994143
Q gi|254780634|r 364 EENIQQINYFLSKNPHFSIDSII 386 (429)
Q Consensus 364 ~Ene~vv~~fL~~~~~~~~~~~~ 386 (429)
++-++|++.| ..+ +|+++...
T Consensus 265 ~~~~~v~~~~-~~~-g~~~~~~~ 285 (298)
T PRK00517 265 EQADEVLEAY-EDA-GFTLDEVA 285 (298)
T ss_pred HHHHHHHHHH-HHC-CCEEEEEE
T ss_conf 8999999999-987-99897886
No 66
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=98.32 E-value=1.2e-05 Score=58.06 Aligned_cols=145 Identities=12% Similarity=0.196 Sum_probs=104.4
Q ss_pred HHCCCEEEEECCCCCCCCCCCC--CCCCCEEEECCCCCCHHHHHHHHHHCCCCEEHHHHCCHHHHHHHHHHHHHCCCCC-
Q ss_conf 3126548984155654211236--6666258601346882799999986168810055249899999999987502886-
Q gi|254780634|r 207 TFQRGWFEIQDEGSQIVSNLTA--ITNSSQILDFCAGGGGKTLALSMLLNNKGQIHAWDNNKSRMAPIVARIKRAGIHN- 283 (429)
Q Consensus 207 ~f~~G~~~VQD~aSql~~~~l~--~~~g~~vLD~CAapGGKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~- 283 (429)
+|-.|. -+..+++..+|. .++|++|||+.+|.|-=+ ||+..-+..+++++|+++.=++..++|+++.|+..
T Consensus 140 AFGTG~----HpTT~lcL~~Le~~~~~g~~vlDvGcGSGILa--IAa~kLGA~~v~g~DiDp~AV~aa~eNa~~N~v~~~ 213 (300)
T COG2264 140 AFGTGT----HPTTSLCLEALEKLLKKGKTVLDVGCGSGILA--IAAAKLGAKKVVGVDIDPQAVEAARENARLNGVELL 213 (300)
T ss_pred CCCCCC----CHHHHHHHHHHHHHHCCCCEEEEECCCHHHHH--HHHHHCCCCEEEEECCCHHHHHHHHHHHHHCCCCHH
T ss_conf 367887----80179999999986058987998267815999--999981986689971888999999999997699602
Q ss_pred CEEEECCCCCCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCH
Q ss_conf 08821554344572324678962754450444442236672496789999998789999999960898389997758882
Q gi|254780634|r 284 VQLHSSWESLRNLQEHFTTVLVDAPCSGTGTWRRRPDIKWRLSQKNLIERTEEQKKILEESAQFVRPEGYLVYITCSILP 363 (429)
Q Consensus 284 v~~~~~~~~~~~~~~~fd~vl~DaPCSg~G~~rr~Pe~~w~~~~~~~~~~~~lQ~~iL~~a~~~lk~gG~lvYsTCS~~~ 363 (429)
+.............++||.|..- | |+..=.++.......+||||+++-|= |..
T Consensus 214 ~~~~~~~~~~~~~~~~~DvIVAN-----------------------I--LA~vl~~La~~~~~~lkpgg~lIlSG--Il~ 266 (300)
T COG2264 214 VQAKGFLLLEVPENGPFDVIVAN-----------------------I--LAEVLVELAPDIKRLLKPGGRLILSG--ILE 266 (300)
T ss_pred HHCCCCCCHHHCCCCCCCEEEEH-----------------------H--HHHHHHHHHHHHHHHCCCCCEEEEEE--ECH
T ss_conf 20034563000136865689860-----------------------5--27899999999998708893699986--207
Q ss_pred HHCHHHHHHHHHHCCCCEEEECC
Q ss_conf 42999899999857997994143
Q gi|254780634|r 364 EENIQQINYFLSKNPHFSIDSII 386 (429)
Q Consensus 364 ~Ene~vv~~fL~~~~~~~~~~~~ 386 (429)
+.-+.|.+ .+.+ .+|.+++..
T Consensus 267 ~q~~~V~~-a~~~-~gf~v~~~~ 287 (300)
T COG2264 267 DQAESVAE-AYEQ-AGFEVVEVL 287 (300)
T ss_pred HHHHHHHH-HHHH-CCCEEEEEE
T ss_conf 58999999-9985-897686897
No 67
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=98.31 E-value=3.2e-06 Score=62.03 Aligned_cols=121 Identities=20% Similarity=0.321 Sum_probs=92.8
Q ss_pred CCCCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHCCCCEEHHHHCCHHHHHHHHHHHHHCCCCC-CEEEEC-CC--C
Q ss_conf 1556542112366666258601346882799999986168810055249899999999987502886-088215-54--3
Q gi|254780634|r 217 DEGSQIVSNLTAITNSSQILDFCAGGGGKTLALSMLLNNKGQIHAWDNNKSRMAPIVARIKRAGIHN-VQLHSS-WE--S 292 (429)
Q Consensus 217 D~aSql~~~~l~~~~g~~vLD~CAapGGKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~-v~~~~~-~~--~ 292 (429)
.+.-++...++......+||....+-|==|+.||.-+...|+|+++|+++++.+..++|++++|+.+ |++... +. .
T Consensus 45 ~e~g~~L~~L~~~~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~ 124 (219)
T COG4122 45 PETGALLRLLARLSGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDALDV 124 (219)
T ss_pred HHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCEEEEEECCCHHHH
T ss_conf 14899999999734986499963523799999996388897699970798999999999997597652898835747999
Q ss_pred CC-CCCCCCCEEEECCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCC
Q ss_conf 44-57232467896275445044444223667249678999999878999999996089838999775888
Q gi|254780634|r 293 LR-NLQEHFTTVLVDAPCSGTGTWRRRPDIKWRLSQKNLIERTEEQKKILEESAQFVRPEGYLVYITCSIL 362 (429)
Q Consensus 293 ~~-~~~~~fd~vl~DaPCSg~G~~rr~Pe~~w~~~~~~~~~~~~lQ~~iL~~a~~~lk~gG~lvYsTCS~~ 362 (429)
+. ...+.||.|++||-=+ ....-++.+.++|+|||.+|--.-...
T Consensus 125 l~~~~~~~fDliFIDadK~-------------------------~yp~~le~~~~lLr~GGliv~DNvl~~ 170 (219)
T COG4122 125 LSRLLDGSFDLVFIDADKA-------------------------DYPEYLERALPLLRPGGLIVADNVLFG 170 (219)
T ss_pred HHHCCCCCCCEEEEECCHH-------------------------HCHHHHHHHHHHHCCCCEEEEEECCCC
T ss_conf 9733478856899837843-------------------------599999999997378968998303567
No 68
>TIGR00438 rrmJ ribosomal RNA large subunit methyltransferase J; InterPro: IPR004512 The ribosomal RNA large subunit methyltransferase J 2.1.1 from EC methylates the 23S rRNA. It specifically methylates the uridine in position 2552 of 23s rRNA in the 50S particle using S-adenosyl-L-methionine as a substrate. It was previously known as cell division protein ftsJ.; GO: 0016436 rRNA (uridine) methyltransferase activity, 0006364 rRNA processing.
Probab=98.31 E-value=2.4e-06 Score=62.89 Aligned_cols=134 Identities=20% Similarity=0.277 Sum_probs=92.9
Q ss_pred CCCCCEEEECCCCCCHHHHHHHHHHCCCCEEHHHHCCHHHHHHHHHHHHHCCCCCCEEEECCCCCCC--------CC---
Q ss_conf 6666258601346882799999986168810055249899999999987502886088215543445--------72---
Q gi|254780634|r 229 ITNSSQILDFCAGGGGKTLALSMLLNNKGQIHAWDNNKSRMAPIVARIKRAGIHNVQLHSSWESLRN--------LQ--- 297 (429)
Q Consensus 229 ~~~g~~vLD~CAapGGKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~~~~~~~--------~~--- 297 (429)
.++|+.|||+.|||||=+-.-.+..+++|.|+|+|+.+=+ -.-+.|+....+|.+.+. ..
T Consensus 30 ik~G~~VlDLGAAPGGWsQva~~~~G~kG~ViA~Dl~~~k---------~FP~~nv~fi~GDftdee~l~ki~~~~g~de 100 (192)
T TIGR00438 30 IKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK---------GFPIENVDFIRGDFTDEEVLNKILERVGDDE 100 (192)
T ss_pred EECCCEEEECCCCCCCHHHHHHHHHCCCCEEEEEECCCCC---------CCCCCCEEEEECCCCCHHHHHHHHHHCCCCC
T ss_conf 1078867865789873877887760685338998545578---------8564661475447678789999998578987
Q ss_pred CCCCEEEECCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHCHHHHHHHH-HH
Q ss_conf 32467896275445044444223667249678999999878999999996089838999775888242999899999-85
Q gi|254780634|r 298 EHFTTVLVDAPCSGTGTWRRRPDIKWRLSQKNLIERTEEQKKILEESAQFVRPEGYLVYITCSILPEENIQQINYFL-SK 376 (429)
Q Consensus 298 ~~fd~vl~DaPCSg~G~~rr~Pe~~w~~~~~~~~~~~~lQ~~iL~~a~~~lk~gG~lvYsTCS~~~~Ene~vv~~fL-~~ 376 (429)
.+.|.|+=||-=+=+|+ |...--.-..|+++-.+| |-+.|+++|-.|==+ +.= |+ ++.|+ +-
T Consensus 101 kk~DVV~SDaaP~~SG~--------~~iDh~Rs~dLv~~aL~i---a~~vL~~~GnfvvKv---FqG--e~-~d~y~~e~ 163 (192)
T TIGR00438 101 KKVDVVMSDAAPNISGI--------WDIDHLRSIDLVELALDI---AKEVLKPKGNFVVKV---FQG--EE-IDEYLNEL 163 (192)
T ss_pred CEEEEEEECCCCCCCCC--------CCCCHHHHHHHHHHHHHH---HHHHHHCCCCEEEEE---EEC--CC-HHHHHHHH
T ss_conf 43778985268887898--------754344379999999999---999861589899998---537--42-88999976
Q ss_pred CCCCEEEECCCC
Q ss_conf 799799414300
Q gi|254780634|r 377 NPHFSIDSIIDD 388 (429)
Q Consensus 377 ~~~~~~~~~~~~ 388 (429)
.+.|..+.+..+
T Consensus 164 r~~F~~~k~~kP 175 (192)
T TIGR00438 164 RKLFEKVKVTKP 175 (192)
T ss_pred HHCCCEEEEECC
T ss_conf 520547674478
No 69
>pfam01596 Methyltransf_3 O-methyltransferase. Members of this family are O-methyltransferases. The family includes catechol o-methyltransferase, caffeoyl-CoA O-methyltransferase, and a family of bacterial O-methyltransferases that may be involved in antibiotic production.
Probab=98.30 E-value=3.2e-06 Score=62.00 Aligned_cols=139 Identities=18% Similarity=0.277 Sum_probs=97.8
Q ss_pred CCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHCCCCEEHHHHCCHHHHHHHHHHHHHCCCCC-CEEEECCC--CCCC-
Q ss_conf 6542112366666258601346882799999986168810055249899999999987502886-08821554--3445-
Q gi|254780634|r 220 SQIVSNLTAITNSSQILDFCAGGGGKTLALSMLLNNKGQIHAWDNNKSRMAPIVARIKRAGIHN-VQLHSSWE--SLRN- 295 (429)
Q Consensus 220 Sql~~~~l~~~~g~~vLD~CAapGGKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~-v~~~~~~~--~~~~- 295 (429)
.|+...++......+||....+-|==|+.||+-+...|+|+++|.++.+....+++++++|+.+ |++...++ .++.
T Consensus 33 g~~L~~l~~~~~ak~iLEiGT~~GySal~lA~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gdA~~~l~~l 112 (204)
T pfam01596 33 GQFLSMLVKLVGAKRTLEIGVFTGYSLLATALALPEDGKITACDIDREAYEIGLPFIQKAGVADKIEFRVGDALKTLEQL 112 (204)
T ss_pred HHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHCCCCCEEEEEEECHHHHHHHHHHHHHCCCCCEEEEEEECHHHHHHHH
T ss_conf 99999999975987899983432599999998489996899998048999999999997798744799987499999999
Q ss_pred ----CCCCCCEEEECCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECC-----CCHHHC
Q ss_conf ----72324678962754450444442236672496789999998789999999960898389997758-----882429
Q gi|254780634|r 296 ----LQEHFTTVLVDAPCSGTGTWRRRPDIKWRLSQKNLIERTEEQKKILEESAQFVRPEGYLVYITCS-----ILPEEN 366 (429)
Q Consensus 296 ----~~~~fd~vl~DaPCSg~G~~rr~Pe~~w~~~~~~~~~~~~lQ~~iL~~a~~~lk~gG~lvYsTCS-----~~~~En 366 (429)
..++||.|++||- ..+. ...++.+.++|+|||.+|.--.= +.|.-+
T Consensus 113 ~~~~~~~~fD~vFiDad------------------K~~Y-------~~y~e~~~~lL~~gGiii~DNvL~~G~V~~~~~~ 167 (204)
T pfam01596 113 VEDKPLGEFDFAFVDAD------------------KSSY-------PNYYERLLELVKVGGLIAIDNTLWFGKVAEPDDE 167 (204)
T ss_pred HHCCCCCCCCEEEEECC------------------HHHH-------HHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCC
T ss_conf 84477776438998188------------------8777-------9999999986369809999445346856786668
Q ss_pred H---HHHHHHHH---HCCCCEEE
Q ss_conf 9---98999998---57997994
Q gi|254780634|r 367 I---QQINYFLS---KNPHFSID 383 (429)
Q Consensus 367 e---~vv~~fL~---~~~~~~~~ 383 (429)
. .-|+.|.+ .+|.|+..
T Consensus 168 ~~~~~~ir~fn~~i~~d~r~~~~ 190 (204)
T pfam01596 168 VPETVRVRELNKLLASDERVEIS 190 (204)
T ss_pred CHHHHHHHHHHHHHHHCCCEEEE
T ss_conf 77889999999998539996999
No 70
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.28 E-value=8.4e-06 Score=59.19 Aligned_cols=130 Identities=19% Similarity=0.190 Sum_probs=85.9
Q ss_pred CCCCEEEECCCCCCHHHHHHHHHHCCCCEEHHHHCCHHHHHHHHHHHHHCCCCCCEEEECCCCCC--------CCC-CCC
Q ss_conf 66625860134688279999998616881005524989999999998750288608821554344--------572-324
Q gi|254780634|r 230 TNSSQILDFCAGGGGKTLALSMLLNNKGQIHAWDNNKSRMAPIVARIKRAGIHNVQLHSSWESLR--------NLQ-EHF 300 (429)
Q Consensus 230 ~~g~~vLD~CAapGGKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~~~~~~--------~~~-~~f 300 (429)
++|+.|+|+||||||=|-..+..++.++.|+|+|+.+-.. +.+|.....|.+.+ ... ..+
T Consensus 44 ~~~~~ViDLGAAPGgWsQva~~~~~~~~~vvavDi~p~~~-----------~~~V~~iq~d~~~~~~~~~l~~~l~~~~~ 112 (205)
T COG0293 44 KPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMKP-----------IPGVIFLQGDITDEDTLEKLLEALGGAPV 112 (205)
T ss_pred CCCCEEEECCCCCCCHHHHHHHHHCCCCCEEEEECCCCCC-----------CCCCEEEEEECCCCCHHHHHHHHCCCCCC
T ss_conf 5898799838799849999999738888489997754556-----------78946884132484379999987077876
Q ss_pred CEEEECCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHCHHHHHHHHHHCCCC
Q ss_conf 67896275445044444223667249678999999878999999996089838999775888242999899999857997
Q gi|254780634|r 301 TTVLVDAPCSGTGTWRRRPDIKWRLSQKNLIERTEEQKKILEESAQFVRPEGYLVYITCSILPEENIQQINYFLSKNPHF 380 (429)
Q Consensus 301 d~vl~DaPCSg~G~~rr~Pe~~w~~~~~~~~~~~~lQ~~iL~~a~~~lk~gG~lvYsTCS~~~~Ene~vv~~fL~~~~~~ 380 (429)
|.|+.|+-=--+|+ |.. |-.....|=...++-|...|+|||..| |.++.-|+++.+-+-+.++ |
T Consensus 113 DvV~sD~ap~~~g~--------~~~---Dh~r~~~L~~~a~~~a~~vL~~~G~fv---~K~fqg~~~~~~l~~~~~~--F 176 (205)
T COG0293 113 DVVLSDMAPNTSGN--------RSV---DHARSMYLCELALEFALEVLKPGGSFV---AKVFQGEDFEDLLKALRRL--F 176 (205)
T ss_pred CEEEECCCCCCCCC--------CCC---CHHHHHHHHHHHHHHHHHEECCCCEEE---EEEEECCCHHHHHHHHHHH--H
T ss_conf 66872588776787--------220---088999999999999987257898399---9997579879999999986--3
Q ss_pred EEEECC
Q ss_conf 994143
Q gi|254780634|r 381 SIDSII 386 (429)
Q Consensus 381 ~~~~~~ 386 (429)
+.+...
T Consensus 177 ~~v~~~ 182 (205)
T COG0293 177 RKVKIF 182 (205)
T ss_pred CEEEEE
T ss_conf 206773
No 71
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=98.26 E-value=3.2e-06 Score=62.05 Aligned_cols=107 Identities=20% Similarity=0.302 Sum_probs=76.8
Q ss_pred CCCCEEEECCCCCCHHHHHHHHHHCCCCEEHHHHCCHHHHHHHHHHHHHCCCCCCEEEECC-CCCCCCCCCCCEEEECCC
Q ss_conf 6662586013468827999999861688100552498999999999875028860882155-434457232467896275
Q gi|254780634|r 230 TNSSQILDFCAGGGGKTLALSMLLNNKGQIHAWDNNKSRMAPIVARIKRAGIHNVQLHSSW-ESLRNLQEHFTTVLVDAP 308 (429)
Q Consensus 230 ~~g~~vLD~CAapGGKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~~-~~~~~~~~~fd~vl~DaP 308 (429)
-+|.+|||..||-|-=|.-||.+ ...|+++|.+++=++..+..+.+.|+. +.-.... ..+....++||.|++=
T Consensus 58 l~g~~vLDvGCGgG~Lse~mAr~---Ga~VtgiD~se~~I~~Ak~ha~e~gv~-i~y~~~~~edl~~~~~~FDvV~cm-- 131 (243)
T COG2227 58 LPGLRVLDVGCGGGILSEPLARL---GASVTGIDASEKPIEVAKLHALESGVN-IDYRQATVEDLASAGGQFDVVTCM-- 131 (243)
T ss_pred CCCCEEEEECCCCCHHHHHHHHC---CCEEEEECCCHHHHHHHHHHHHHCCCC-CCCHHHHHHHHHHCCCCCCEEEEH--
T ss_conf 77770887458832864999977---994697438767789998754424632-252233299997248974489773--
Q ss_pred CCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCC
Q ss_conf 445044444223667249678999999878999999996089838999775888
Q gi|254780634|r 309 CSGTGTWRRRPDIKWRLSQKNLIERTEEQKKILEESAQFVRPEGYLVYITCSIL 362 (429)
Q Consensus 309 CSg~G~~rr~Pe~~w~~~~~~~~~~~~lQ~~iL~~a~~~lk~gG~lvYsTCS~~ 362 (429)
-|+-+=| --..++.+++++|||||.|+-||=.-+
T Consensus 132 ----EVlEHv~----------------dp~~~~~~c~~lvkP~G~lf~STinrt 165 (243)
T COG2227 132 ----EVLEHVP----------------DPESFLRACAKLVKPGGILFLSTINRT 165 (243)
T ss_pred ----HHHHCCC----------------CHHHHHHHHHHHCCCCCEEEEECCCCC
T ss_conf ----5877169----------------999999999986299928999420138
No 72
>pfam03848 TehB Tellurite resistance protein TehB.
Probab=98.26 E-value=1.2e-05 Score=58.18 Aligned_cols=138 Identities=16% Similarity=0.215 Sum_probs=99.1
Q ss_pred CCCCCCCCEEEECCCCCCHHHHHHHHHHCCCCEEHHHHCCHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCCEEEE
Q ss_conf 23666662586013468827999999861688100552498999999999875028860882155434457232467896
Q gi|254780634|r 226 LTAITNSSQILDFCAGGGGKTLALSMLLNNKGQIHAWDNNKSRMAPIVARIKRAGIHNVQLHSSWESLRNLQEHFTTVLV 305 (429)
Q Consensus 226 ~l~~~~g~~vLD~CAapGGKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~~~~~~~~~~~fd~vl~ 305 (429)
++..-++.++||+.||.|--++.||++ .-.|+|+|+++.-+..++..+++-|+ ++.+...|.....+.+.||.|+-
T Consensus 25 a~~~i~pgk~LDlgcG~GRNslyLa~~---G~~VtavD~n~~aL~~l~~ia~~e~l-~i~~~~~Din~~~~~e~YD~Iis 100 (192)
T pfam03848 25 AVKTVKPGKALDLGCGQGRNSLFLSLL---GYDVTAVDHNENSIANLQDIKEKENL-DIPTALYDINSASIDENYDFILS 100 (192)
T ss_pred HHHHCCCCCEEEECCCCCHHHHHHHHC---CCEEEEEECCHHHHHHHHHHHHHCCC-CCEEEEECCCCCCCCCCCCEEEE
T ss_conf 986379974666047897318999868---99179997999999999999997099-75268731555687677687988
Q ss_pred CCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEC------------CCCHHHCHHHHHHH
Q ss_conf 275445044444223667249678999999878999999996089838999775------------88824299989999
Q gi|254780634|r 306 DAPCSGTGTWRRRPDIKWRLSQKNLIERTEEQKKILEESAQFVRPEGYLVYITC------------SILPEENIQQINYF 373 (429)
Q Consensus 306 DaPCSg~G~~rr~Pe~~w~~~~~~~~~~~~lQ~~iL~~a~~~lk~gG~lvYsTC------------S~~~~Ene~vv~~f 373 (429)
|.++. -+.++.+. .|+.+.-+..+|||+.++.+- ++.-.||| .
T Consensus 101 ------TVvfm-------FL~~~~ip-------~iI~~mq~~T~pGGynlIv~am~t~d~pc~~~f~ftfk~gE-----L 155 (192)
T pfam03848 101 ------TVVLM-------FLQAERIP-------AIIANMQEHTNVGGYNLIVAAMSTADYPCTVPFSFTFKEGE-----L 155 (192)
T ss_pred ------EEEEE-------ECCHHHHH-------HHHHHHHHHCCCCCEEEEEEEECCCCCCCCCCCCCCCCHHH-----H
T ss_conf ------88777-------31867877-------99999998528998899997614553789989887788018-----9
Q ss_pred HHHCCCCEEEECCCCCCCC
Q ss_conf 9857997994143002223
Q gi|254780634|r 374 LSKNPHFSIDSIIDDWNQL 392 (429)
Q Consensus 374 L~~~~~~~~~~~~~~~~~~ 392 (429)
.+-..+|+++.....++..
T Consensus 156 ~~yy~~WeilkYnE~~g~l 174 (192)
T pfam03848 156 KRYYQDWELLKYNENVGEL 174 (192)
T ss_pred HHHHCCCEEEEECCCCCHH
T ss_conf 9973898799853776576
No 73
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=98.25 E-value=2.2e-06 Score=63.07 Aligned_cols=116 Identities=18% Similarity=0.182 Sum_probs=82.3
Q ss_pred EECCCCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHCCCCEEHHHHCCHHHHHHHHHHHHHCCCCCCEEEECCC-CC
Q ss_conf 84155654211236666625860134688279999998616881005524989999999998750288608821554-34
Q gi|254780634|r 215 IQDEGSQIVSNLTAITNSSQILDFCAGGGGKTLALSMLLNNKGQIHAWDNNKSRMAPIVARIKRAGIHNVQLHSSWE-SL 293 (429)
Q Consensus 215 VQD~aSql~~~~l~~~~g~~vLD~CAapGGKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~~~-~~ 293 (429)
||-..++-....|.+.+..+|||++||+|-=|.++++. .+.++++|+++.-+...+++.. +......|. .+
T Consensus 26 ~Q~~~a~~Ll~~l~~~~~~~vLDlGcGtG~~t~~l~~~---~~~v~~~Dls~~Ml~~a~~~~~-----~~~~~~~D~e~L 97 (251)
T PRK10258 26 LQRQSADALLAMLPQRKFTHVLDAGCGPGWMSRYWRER---GSQVTALDLSPPMLAQARQKDA-----ADHYLAGDIESL 97 (251)
T ss_pred HHHHHHHHHHHHCCCCCCCCEEEEEEHHHHHHHHHHHC---CCEEEEEECCHHHHHHHHHHCC-----CHHHHHCHHHHC
T ss_conf 99999999997366578993999831002789999974---9969999598999999987486-----334353606309
Q ss_pred CCCCCCCCEEEECCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECC
Q ss_conf 4572324678962754450444442236672496789999998789999999960898389997758
Q gi|254780634|r 294 RNLQEHFTTVLVDAPCSGTGTWRRRPDIKWRLSQKNLIERTEEQKKILEESAQFVRPEGYLVYITCS 360 (429)
Q Consensus 294 ~~~~~~fd~vl~DaPCSg~G~~rr~Pe~~w~~~~~~~~~~~~lQ~~iL~~a~~~lk~gG~lvYsTCS 360 (429)
+...+.||.|+ |+.. +-|--.+. ..|.+..+.|||||.++.||-.
T Consensus 98 p~~~~sfDli~-----S~~~-------lqW~~d~~----------~~l~e~~rvLkPgG~l~fst~g 142 (251)
T PRK10258 98 PLATATFDLAW-----SNLA-------VQWCGNLS----------TALRELYRVVRPGGVVAFTTLV 142 (251)
T ss_pred CCCCCCCCEEE-----ECCC-------HHHCCCHH----------HHHHHHHHHCCCCCEEEEECCC
T ss_conf 99878821785-----5040-------45259999----------9999999645899499998157
No 74
>PRK00202 nusB transcription antitermination protein NusB; Reviewed
Probab=98.24 E-value=2.5e-05 Score=55.95 Aligned_cols=109 Identities=12% Similarity=0.125 Sum_probs=75.9
Q ss_pred CHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC-----------H
Q ss_conf 71689999999999999569978999999998685889557999999999999758999997056896-----------7
Q gi|254780634|r 2 RLGGQIAAAIEILKDIRTHKKPITNSLKDWGMSHRFAGSSDRASISNIVHDVLRKYLSSAYIMDSDDP-----------E 70 (429)
Q Consensus 2 ~~~aR~~AA~eiL~~v~~~~~~ad~~L~~~~~~~r~lgs~DR~~i~~lvyg~lR~~~~ld~il~~~~~-----------r 70 (429)
|-.||. +|+++|.++..++.+++.++.++...+. ....|+.|++++|+|+++++..+|.++++... +
T Consensus 3 R~~aR~-~A~q~Ly~~~~~~~~~~~il~~~~~~~~-~~~~d~~~~~~lv~gv~~~~~~iD~~I~~~l~~w~~~rl~~v~~ 80 (132)
T PRK00202 3 RRKARE-AAVQALYQWELSGNDIAEIEAEFLEEQD-GADADVAYFRELVSGVVENQEELDELISPHLKDWTLERLDPVER 80 (132)
T ss_pred HHHHHH-HHHHHHHHHHHCCCCHHHHHHHHHHHCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHH
T ss_conf 799999-9999999998519999999999998745-65577999999999999969999999999855999642468999
Q ss_pred HHH-HHH--HHHHCCCCHHHHHHHHHHHHHC-CCCCHHHHHHHHHC
Q ss_conf 999-999--9974388989999988543303-43320467754420
Q gi|254780634|r 71 SLV-YAV--IMKDWDIPWEKMLSMLKEDLFS-PPLPKESVIKSFHS 112 (429)
Q Consensus 71 ~~~-~~~--l~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~~~~~~~ 112 (429)
+++ .++ +.....+|...++++.++.... .......+++++..
T Consensus 81 ~ILr~a~yEl~~~~~~p~~v~InE~v~lak~~~~~~~~~fVNgVLd 126 (132)
T PRK00202 81 AILRLAAYELLFRDDVPYKVVINEAIELAKKFGDEDSHKFVNGVLD 126 (132)
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHH
T ss_conf 9999999999857577547799999999999778972133699999
No 75
>pfam06325 PrmA Ribosomal protein L11 methyltransferase (PrmA). This family consists of several Ribosomal protein L11 methyltransferase (EC:2.1.1.-) sequences.
Probab=98.23 E-value=5e-05 Score=53.93 Aligned_cols=141 Identities=14% Similarity=0.213 Sum_probs=96.4
Q ss_pred HHCCCEEEEECCCCCCCCCCCC--CCCCCEEEECCCCCCHHHHHHHHHHCCCCEEHHHHCCHHHHHHHHHHHHHCCCCCC
Q ss_conf 3126548984155654211236--66662586013468827999999861688100552498999999999875028860
Q gi|254780634|r 207 TFQRGWFEIQDEGSQIVSNLTA--ITNSSQILDFCAGGGGKTLALSMLLNNKGQIHAWDNNKSRMAPIVARIKRAGIHNV 284 (429)
Q Consensus 207 ~f~~G~~~VQD~aSql~~~~l~--~~~g~~vLD~CAapGGKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v 284 (429)
+|-.|. -+..+++..+|. ..+|++|||+.+|.|-=+ ||+..-+.+.|+|+|+++.=++..++|+++.|+...
T Consensus 138 AFGTG~----H~TT~lcl~~l~~~~~~~~~vlD~GcGSGILa--IaA~klGa~~v~a~DiDp~Av~~a~eN~~~N~v~~~ 211 (294)
T pfam06325 138 AFGTGT----HPTTALCLEALESLVKPGETVLDVGCGSGILA--IAALKLGAKKVVGVDIDPVAVRAAKENAELNGVEAQ 211 (294)
T ss_pred CCCCCC----CHHHHHHHHHHHHHCCCCCEEEEECCCHHHHH--HHHHHCCCCCEEEEECCHHHHHHHHHHHHHCCCCCC
T ss_conf 456777----75799999999865036986785056508999--999975999689998889999999999997699831
Q ss_pred -EEEECCCCCCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCH
Q ss_conf -8821554344572324678962754450444442236672496789999998789999999960898389997758882
Q gi|254780634|r 285 -QLHSSWESLRNLQEHFTTVLVDAPCSGTGTWRRRPDIKWRLSQKNLIERTEEQKKILEESAQFVRPEGYLVYITCSILP 363 (429)
Q Consensus 285 -~~~~~~~~~~~~~~~fd~vl~DaPCSg~G~~rr~Pe~~w~~~~~~~~~~~~lQ~~iL~~a~~~lk~gG~lvYsTCS~~~ 363 (429)
.+.... ....++||.|+.- + ++..-.++.....+.|+|||+|+-|= |..
T Consensus 212 ~~~~~~~---~~~~~~~DlIvAN-----------------------I--la~~L~~l~~~~~~~l~~~G~lilSG--il~ 261 (294)
T pfam06325 212 LEVYLPG---DLPEGKADVVVAN-----------------------I--LADPLIELAPDIYALVKPGGYLILSG--ILE 261 (294)
T ss_pred EEEECCC---CCCCCCCCEEEEH-----------------------H--CHHHHHHHHHHHHHHHCCCCEEEECC--CCH
T ss_conf 7996443---1556645789841-----------------------0--89999999999999738998999917--828
Q ss_pred HHCHHHHHHHHHHCCCCEEEECC
Q ss_conf 42999899999857997994143
Q gi|254780634|r 364 EENIQQINYFLSKNPHFSIDSII 386 (429)
Q Consensus 364 ~Ene~vv~~fL~~~~~~~~~~~~ 386 (429)
+. ++.|...++ ++|+++...
T Consensus 262 ~q-~~~v~~a~~--~g~~~~~~~ 281 (294)
T pfam06325 262 EQ-ADDVAEAYS--QGFELITVE 281 (294)
T ss_pred HH-HHHHHHHHH--CCCEEEEEE
T ss_conf 99-999999998--699774377
No 76
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=98.21 E-value=4.3e-06 Score=61.17 Aligned_cols=106 Identities=14% Similarity=0.183 Sum_probs=76.4
Q ss_pred CCCCEEEECCCCCCHHHHHHHHHHCCCCEEHHHHCCHHHHHHHHHHHHHCCCCCCEEEECCC--CCCCCCCCCCEEEECC
Q ss_conf 66625860134688279999998616881005524989999999998750288608821554--3445723246789627
Q gi|254780634|r 230 TNSSQILDFCAGGGGKTLALSMLLNNKGQIHAWDNNKSRMAPIVARIKRAGIHNVQLHSSWE--SLRNLQEHFTTVLVDA 307 (429)
Q Consensus 230 ~~g~~vLD~CAapGGKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~~~--~~~~~~~~fd~vl~Da 307 (429)
-.|.+|||+|||-|.=.+-- +-.+...++.+|.+..-++.+++|++.++..++++...+. .+......||.|++|+
T Consensus 51 i~~~~vLDLFAGSGalGlEA--LSRGA~~v~fVE~~~~~~~~i~~N~~~l~~~~~~ii~~da~~~L~~~~~~fDlIF~DP 128 (198)
T PRK10909 51 IVDARCLDCFAGSGALGLEA--LSRYAAGATLLEMDRAVSQQLIKNLATLKAGNARVVNTNALSFLAQPGTPHNVVFVDP 128 (198)
T ss_pred CCCCEEEECCCCCCHHHHHH--HHCCCCEEEEEECCHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHCCCCCEEEEEECC
T ss_conf 29987998277746889999--9879978999978999999999999984888679995569998625599521899899
Q ss_pred CCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEE
Q ss_conf 544504444422366724967899999987899999999608983899977
Q gi|254780634|r 308 PCSGTGTWRRRPDIKWRLSQKNLIERTEEQKKILEESAQFVRPEGYLVYIT 358 (429)
Q Consensus 308 PCSg~G~~rr~Pe~~w~~~~~~~~~~~~lQ~~iL~~a~~~lk~gG~lvYsT 358 (429)
|-. .+. +..+...|.. ..+|+++|.+|+=+
T Consensus 129 PY~-~~~------------------~~~~l~~l~~--~~~L~~~gliiiE~ 158 (198)
T PRK10909 129 PFR-KGL------------------LEETINLLEQ--NGWLADDALIYVES 158 (198)
T ss_pred CCC-CCH------------------HHHHHHHHHH--CCCCCCCCEEEEEE
T ss_conf 976-555------------------9999999998--88918996999995
No 77
>PRK11036 putative metallothionein SmtA; Provisional
Probab=98.20 E-value=1.5e-05 Score=57.43 Aligned_cols=116 Identities=18% Similarity=0.277 Sum_probs=82.2
Q ss_pred CCCCEEEECCCCCCHHHHHHHHHHCCCCEEHHHHCCHHHHHHHHHHHHHCCCC-CCEEEECCC-CC-CCCCCCCCEEEEC
Q ss_conf 66625860134688279999998616881005524989999999998750288-608821554-34-4572324678962
Q gi|254780634|r 230 TNSSQILDFCAGGGGKTLALSMLLNNKGQIHAWDNNKSRMAPIVARIKRAGIH-NVQLHSSWE-SL-RNLQEHFTTVLVD 306 (429)
Q Consensus 230 ~~g~~vLD~CAapGGKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~-~v~~~~~~~-~~-~~~~~~fd~vl~D 306 (429)
...-+|||+.+|.|.=|..||++ .-.|+.+|+|+.=+...++++...|+. +++....+. .+ ....+.||.|||-
T Consensus 43 ~~plrVLDvG~G~G~~a~~lA~~---Gh~Vt~~D~S~~mL~~A~~~a~~~gv~~~~~~v~~~~q~l~~~~~~~fDlVlcH 119 (256)
T PRK11036 43 PRPLRVLDAGGGEGQTAIKMAEL---GHQVTLCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQHLETPVDLILFH 119 (256)
T ss_pred CCCCEEEEECCCCCHHHHHHHHC---CCEEEEECCCHHHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHCCCCCCEEEEE
T ss_conf 99983998379877989999977---997998669999999999998864966127988568998854236886678651
Q ss_pred CCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHCHHHHHHHH
Q ss_conf 75445044444223667249678999999878999999996089838999775888242999899999
Q gi|254780634|r 307 APCSGTGTWRRRPDIKWRLSQKNLIERTEEQKKILEESAQFVRPEGYLVYITCSILPEENIQQINYFL 374 (429)
Q Consensus 307 aPCSg~G~~rr~Pe~~w~~~~~~~~~~~~lQ~~iL~~a~~~lk~gG~lvYsTCS~~~~Ene~vv~~fL 374 (429)
+ + ..|--.|. .+|...+++|||||.| |.+-.|+ |-.+....+
T Consensus 120 a------V------LE~v~dP~----------~~l~~l~~~lkPGG~l--SLmfyN~--~alv~~n~l 161 (256)
T PRK11036 120 A------V------LEWVADPK----------SVLQTLWSVLRPGGAL--SLMFYNA--NGLLMHNMV 161 (256)
T ss_pred H------H------HHHCCCHH----------HHHHHHHHHHCCCCEE--EEEECCH--HHHHHHHHH
T ss_conf 3------6------77237899----------9999999975899379--9984285--169999998
No 78
>pfam01269 Fibrillarin Fibrillarin.
Probab=98.17 E-value=0.00019 Score=50.02 Aligned_cols=132 Identities=21% Similarity=0.239 Sum_probs=88.3
Q ss_pred CCCCCCCEEEECCCCCCHHHHHHHHHHCCCCEEHHHHCCHHHHHHHHHHHH-HCCCCCCEEEECCCCC---CCCCCCCCE
Q ss_conf 366666258601346882799999986168810055249899999999987-5028860882155434---457232467
Q gi|254780634|r 227 TAITNSSQILDFCAGGGGKTLALSMLLNNKGQIHAWDNNKSRMAPIVARIK-RAGIHNVQLHSSWESL---RNLQEHFTT 302 (429)
Q Consensus 227 l~~~~g~~vLD~CAapGGKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~-r~g~~~v~~~~~~~~~---~~~~~~fd~ 302 (429)
+.++||.+||=+.||-|+--.|+++..+.+|.|+|+|.++.=+..|..-++ |-++ +-+..+.... ..+-+..|.
T Consensus 69 ~~i~~gskVLYLGAasGTTVSHvsDIvg~~G~VyAVE~spr~~RdL~~la~~R~NI--vPIl~DAr~P~~Y~~lv~~VD~ 146 (229)
T pfam01269 69 IPIKPGSKVLYLGAASGTTVSHVSDIVGPEGVVYAVEFSPRVGRELINVAKKRPNI--VPILEDARHPQKYRMLVEMVDV 146 (229)
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHCCCCC--EEEECCCCCHHHHHHHCCCCCE
T ss_conf 68589987999447779857678872288953999971735578999997427994--4576677875676542556668
Q ss_pred EEECCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH-HHHCCCCEEEEEE--CCCCH-HHCHHHHHHHHHH--
Q ss_conf 8962754450444442236672496789999998789999999-9608983899977--58882-4299989999985--
Q gi|254780634|r 303 VLVDAPCSGTGTWRRRPDIKWRLSQKNLIERTEEQKKILEESA-QFVRPEGYLVYIT--CSILP-EENIQQINYFLSK-- 376 (429)
Q Consensus 303 vl~DaPCSg~G~~rr~Pe~~w~~~~~~~~~~~~lQ~~iL~~a~-~~lk~gG~lvYsT--CS~~~-~Ene~vv~~fL~~-- 376 (429)
|+.|+.=. -|.+|+...+ .+||+||.++-|. -|+.- .+.+++.+.-.++
T Consensus 147 ifqDvaQ~-------------------------~Qa~i~~~Na~~FLk~gG~~~l~iKA~Sid~t~~p~~vf~~e~~~L~ 201 (229)
T pfam01269 147 IFADVAQP-------------------------DQARILALNAKYFLKNGGYFMISIKARSIDVTKEPEEVFAREVEKLK 201 (229)
T ss_pred EEECCCCH-------------------------HHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCHHHHHHHHHHHHH
T ss_conf 99627877-------------------------78999999999861269889999971342167898999999999998
Q ss_pred CCCCEEEEC
Q ss_conf 799799414
Q gi|254780634|r 377 NPHFSIDSI 385 (429)
Q Consensus 377 ~~~~~~~~~ 385 (429)
..+|++.+.
T Consensus 202 ~~~~~~~e~ 210 (229)
T pfam01269 202 EEGFKPKEQ 210 (229)
T ss_pred HCCCCEEEE
T ss_conf 769965899
No 79
>pfam02353 CMAS Cyclopropane-fatty-acyl-phospholipid synthase. This family consist of Cyclopropane-fatty-acyl-phospholipid synthase or CFA synthase EC:2.1.1.79 this enzyme catalyse the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid <= S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid.
Probab=98.16 E-value=1.3e-05 Score=57.83 Aligned_cols=118 Identities=14% Similarity=0.240 Sum_probs=89.7
Q ss_pred CCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHCCCCEEHHHHCCHHHHHHHHHHHHHCCCCC-CEEEECCCCCCCCCCC
Q ss_conf 542112366666258601346882799999986168810055249899999999987502886-0882155434457232
Q gi|254780634|r 221 QIVSNLTAITNSSQILDFCAGGGGKTLALSMLLNNKGQIHAWDNNKSRMAPIVARIKRAGIHN-VQLHSSWESLRNLQEH 299 (429)
Q Consensus 221 ql~~~~l~~~~g~~vLD~CAapGGKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~-v~~~~~~~~~~~~~~~ 299 (429)
..++..++.+||++|||+-||=||=+.++|+..+ .+|+++.+|+.-.+-.++++++.|+.+ +++...|-. ...++
T Consensus 52 ~~i~~~l~l~~g~~vLDiGCGWG~~a~~~a~~~g--~~v~giTlS~~Q~~~~~~r~~~~gl~~~v~v~~~Dyr--d~~~~ 127 (273)
T pfam02353 52 DLILDKLGLKPGMTLLDIGCGWGGLMRRAAERYD--VNVVGLTLSKNQYKLARQRVAAEGLQRKVEVLLQDYR--DFDEP 127 (273)
T ss_pred HHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHCC--CEEEEEECCHHHHHHHHHHHHHCCCCCCCCEEECCHH--HCCCC
T ss_conf 9999865889999899978880899999998479--5189997978999999999987087432120006265--47666
Q ss_pred CCEEEECCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCC
Q ss_conf 467896275445044444223667249678999999878999999996089838999775888
Q gi|254780634|r 300 FTTVLVDAPCSGTGTWRRRPDIKWRLSQKNLIERTEEQKKILEESAQFVRPEGYLVYITCSIL 362 (429)
Q Consensus 300 fd~vl~DaPCSg~G~~rr~Pe~~w~~~~~~~~~~~~lQ~~iL~~a~~~lk~gG~lvYsTCS~~ 362 (429)
||+|.- .|++-+=+.-.| ...+....++|||||.++=-|.+..
T Consensus 128 fD~IvS------iem~Ehvg~~~~--------------~~~f~~i~~~LkpgG~~~iq~i~~~ 170 (273)
T pfam02353 128 FDRIVS------VGMFEHVGHENY--------------DTFFKKLYNLLPPGGLMLLHTITGL 170 (273)
T ss_pred CCEEEE------EHHHHHCCHHHH--------------HHHHHHHHHHCCCCCEEEEEEEECC
T ss_conf 666776------516876287779--------------9999999986588973999999425
No 80
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=98.16 E-value=2.1e-05 Score=56.51 Aligned_cols=136 Identities=15% Similarity=0.254 Sum_probs=98.4
Q ss_pred CCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHCCCCEEHHHHCCHHHHHHHHHHHHHCCCC-CCEEEECCCCCCCCCCCC
Q ss_conf 4211236666625860134688279999998616881005524989999999998750288-608821554344572324
Q gi|254780634|r 222 IVSNLTAITNSSQILDFCAGGGGKTLALSMLLNNKGQIHAWDNNKSRMAPIVARIKRAGIH-NVQLHSSWESLRNLQEHF 300 (429)
Q Consensus 222 l~~~~l~~~~g~~vLD~CAapGGKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~-~v~~~~~~~~~~~~~~~f 300 (429)
+++..|..+||++|||.-||-||=+..+|+.. ..+|+++++|+.-....+++++..|+. +|++.-.|-. .+.+.|
T Consensus 63 ~~~~kl~L~~G~~lLDiGCGWG~l~~~aA~~y--~v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~r--d~~e~f 138 (283)
T COG2230 63 LILEKLGLKPGMTLLDIGCGWGGLAIYAAEEY--GVTVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYR--DFEEPF 138 (283)
T ss_pred HHHHHCCCCCCCEEEEECCCHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHHCCCCCCCEEEECCCC--CCCCCC
T ss_conf 99975699999989874788449999999984--99799966899999999999997599766079965621--032434
Q ss_pred CEEEECCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHCHHHHHHHHHH--CC
Q ss_conf 6789627544504444422366724967899999987899999999608983899977588824299989999985--79
Q gi|254780634|r 301 TTVLVDAPCSGTGTWRRRPDIKWRLSQKNLIERTEEQKKILEESAQFVRPEGYLVYITCSILPEENIQQINYFLSK--NP 378 (429)
Q Consensus 301 d~vl~DaPCSg~G~~rr~Pe~~w~~~~~~~~~~~~lQ~~iL~~a~~~lk~gG~lvYsTCS~~~~Ene~vv~~fL~~--~~ 378 (429)
|+|. ..|++-. .+++... .-+..+.+.|+|||.++--|=+-...+-.. ...|+.+ .|
T Consensus 139 DrIv------SvgmfEh-------vg~~~~~-------~ff~~~~~~L~~~G~~llh~I~~~~~~~~~-~~~~i~~yiFP 197 (283)
T COG2230 139 DRIV------SVGMFEH-------VGKENYD-------DFFKKVYALLKPGGRMLLHSITGPDQEFRR-FPDFIDKYIFP 197 (283)
T ss_pred CEEE------EHHHHHH-------HCCCCHH-------HHHHHHHHHCCCCCEEEEEEECCCCCCCCC-CHHHHHHHCCC
T ss_conf 2055------6006887-------3710289-------999999964599965999996678855443-32789985789
Q ss_pred CCEE
Q ss_conf 9799
Q gi|254780634|r 379 HFSI 382 (429)
Q Consensus 379 ~~~~ 382 (429)
+..+
T Consensus 198 gG~l 201 (283)
T COG2230 198 GGEL 201 (283)
T ss_pred CCCC
T ss_conf 9848
No 81
>KOG2904 consensus
Probab=98.14 E-value=4.2e-05 Score=54.39 Aligned_cols=146 Identities=14% Similarity=0.210 Sum_probs=103.9
Q ss_pred CCCEEEECCCCCCHHHHHHHHHHCCCCEEHHHHCCHHHHHHHHHHHHHCCCCC-CEEEEC----CC--CCCCCCCCCCEE
Q ss_conf 66258601346882799999986168810055249899999999987502886-088215----54--344572324678
Q gi|254780634|r 231 NSSQILDFCAGGGGKTLALSMLLNNKGQIHAWDNNKSRMAPIVARIKRAGIHN-VQLHSS----WE--SLRNLQEHFTTV 303 (429)
Q Consensus 231 ~g~~vLD~CAapGGKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~-v~~~~~----~~--~~~~~~~~fd~v 303 (429)
.+..+||+|+|.|--++.|+.-+. .++++|+|.++.-++...+|+.|+++.+ +.+... +. ..+...++.|.+
T Consensus 148 ~~~~ildlgtGSGaIslsll~~L~-~~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~v~~~~me~d~~~~~~l~~~~~dll 226 (328)
T KOG2904 148 KHTHILDLGTGSGAISLSLLHGLP-QCTVTAIDVSKAAIKLAKENAQRLKLSGRIEVIHNIMESDASDEHPLLEGKIDLL 226 (328)
T ss_pred CCCEEEEECCCCCHHHHHHHHCCC-CCEEEEEECCHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCEEEE
T ss_conf 666688705783188999983478-7348998532889999998899874158468984122201256554545752488
Q ss_pred EECCCCCCCH-HHHHHHHHHHHCCHHHH---HHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHCHHHHHHHHHHCCC
Q ss_conf 9627544504-44442236672496789---9999987899999999608983899977588824299989999985799
Q gi|254780634|r 304 LVDAPCSGTG-TWRRRPDIKWRLSQKNL---IERTEEQKKILEESAQFVRPEGYLVYITCSILPEENIQQINYFLSKNPH 379 (429)
Q Consensus 304 l~DaPCSg~G-~~rr~Pe~~w~~~~~~~---~~~~~lQ~~iL~~a~~~lk~gG~lvYsTCS~~~~Ene~vv~~fL~~~~~ 379 (429)
+...|-=-+- .=.=+||++-.-.+-.+ .+--..=..+..-|.++|+|||.++..+--. .+.-..|...+.-.++
T Consensus 227 vsNPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~~le~~~~--~~~~~lv~~~m~s~~~ 304 (328)
T KOG2904 227 VSNPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGFEQLELVER--KEHSYLVRIWMISLKD 304 (328)
T ss_pred ECCCCCCCCCCHHHCCCHHEECCCHHHHCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCC--CCCCHHHHHHHHHCHH
T ss_conf 53899655551223271330237445430666326999999876675456688588973355--6681999999871322
No 82
>pfam08242 Methyltransf_12 Methyltransferase domain. Members of this family are SAM dependent methyltransferases.
Probab=98.09 E-value=1.1e-05 Score=58.50 Aligned_cols=96 Identities=18% Similarity=0.254 Sum_probs=70.7
Q ss_pred EECCCCCCHHHHHHHHHHCCCCEEHHHHCCHHHHHHHHHHHHHCCCCCCEEEE-C-CCCCCCCCCCCCEEEECCCCCCCH
Q ss_conf 60134688279999998616881005524989999999998750288608821-5-543445723246789627544504
Q gi|254780634|r 236 LDFCAGGGGKTLALSMLLNNKGQIHAWDNNKSRMAPIVARIKRAGIHNVQLHS-S-WESLRNLQEHFTTVLVDAPCSGTG 313 (429)
Q Consensus 236 LD~CAapGGKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~-~-~~~~~~~~~~fd~vl~DaPCSg~G 313 (429)
||+.||.|.-+.+++.... .++|+++|+++.-++.+++++.+.+..+..... . ........++||.|++ .+
T Consensus 1 LDvGcG~G~~~~~l~~~~~-~~~v~giD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~------~~ 73 (98)
T pfam08242 1 LDIGCGTGTLLRALLEALP-GLEYTGVDISPAALEAAAERLAALGLLDAVRVRLDVLDAIDLDPGSFDVVVA------SN 73 (98)
T ss_pred CCCCCCCCHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHHCCCCCHHHEEECCCHHHCCCCCCCEEEE------CC
T ss_conf 9886337999999998789-9889998598899999999998713453111000000022203589889961------04
Q ss_pred HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCEE
Q ss_conf 44442236672496789999998789999999960898389
Q gi|254780634|r 314 TWRRRPDIKWRLSQKNLIERTEEQKKILEESAQFVRPEGYL 354 (429)
Q Consensus 314 ~~rr~Pe~~w~~~~~~~~~~~~lQ~~iL~~a~~~lk~gG~l 354 (429)
++..-|+ ..+.|.++.+.|||||+|
T Consensus 74 vl~~~~~----------------~~~~l~~~~r~LkpgG~l 98 (98)
T pfam08242 74 VLHHLAD----------------PRAVLRNLRRLLKPGGVL 98 (98)
T ss_pred CHHHCCC----------------HHHHHHHHHHHCCCCCCC
T ss_conf 1772589----------------999999999974999899
No 83
>TIGR00080 pimt protein-L-isoaspartate O-methyltransferase; InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase () (PCMT) (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyzes the transfer of a methyl group from S- adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerization of normal L-aspartyl and L- asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process.
Probab=98.08 E-value=9.9e-06 Score=58.70 Aligned_cols=122 Identities=17% Similarity=0.247 Sum_probs=97.6
Q ss_pred CCCCCC--CCCCCEEEECCCCCCHHHHHHHHHHCCCCEEHHHHCCHHHHHHHHHHHHH-----CCCCCCEEEECCCCCCC
Q ss_conf 211236--66662586013468827999999861688100552498999999999875-----02886088215543445
Q gi|254780634|r 223 VSNLTA--ITNSSQILDFCAGGGGKTLALSMLLNNKGQIHAWDNNKSRMAPIVARIKR-----AGIHNVQLHSSWESLRN 295 (429)
Q Consensus 223 ~~~~l~--~~~g~~vLD~CAapGGKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r-----~g~~~v~~~~~~~~~~~ 295 (429)
.+.+|+ ..++++|||..+|.|=.|.-||++.+..|.|+++|.-+.=....+.|++. +|.+||.+...|.....
T Consensus 72 m~~yL~nhL~~~~~vLeiG~GSGY~aavlA~~v~~~G~V~SiEri~~L~~~A~~~Lk~hhseqL~~~NV~v~~GDG~~G~ 151 (228)
T TIGR00080 72 MTEYLENHLKPGAKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELVEKARRRLKKHHSEQLGLDNVIVIEGDGRQGW 151 (228)
T ss_pred HHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEEECHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCH
T ss_conf 99988852140355665047855899999998713971899853578899999876543144406886589977886571
Q ss_pred C-CCCCCEEEECCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHH--CHHHHHH
Q ss_conf 7-232467896275445044444223667249678999999878999999996089838999775888242--9998999
Q gi|254780634|r 296 L-QEHFTTVLVDAPCSGTGTWRRRPDIKWRLSQKNLIERTEEQKKILEESAQFVRPEGYLVYITCSILPEE--NIQQINY 372 (429)
Q Consensus 296 ~-~~~fd~vl~DaPCSg~G~~rr~Pe~~w~~~~~~~~~~~~lQ~~iL~~a~~~lk~gG~lvYsTCS~~~~E--ne~vv~~ 372 (429)
. ...||+|++-|=--+. |+-| .+.|+.||+||-= -+| |++++..
T Consensus 152 ~~~APYd~I~~~AA~k~i--------------P~AL--------------~~QL~eGG~L~~P-----v~~~d~~Q~l~~ 198 (228)
T TIGR00080 152 EEKAPYDAILVTAAAKEI--------------PKAL--------------IDQLEEGGILVLP-----VGEVDEEQVLKR 198 (228)
T ss_pred HHCCCCCEEEEECCCCCC--------------CHHH--------------HHHHHHCCEEEEC-----CEEECCCEEEEE
T ss_conf 024883527752378987--------------6578--------------9999728988620-----000067537999
Q ss_pred HHHHC
Q ss_conf 99857
Q gi|254780634|r 373 FLSKN 377 (429)
Q Consensus 373 fL~~~ 377 (429)
|-+++
T Consensus 199 ~~k~n 203 (228)
T TIGR00080 199 VEKRN 203 (228)
T ss_pred EEEEC
T ss_conf 98708
No 84
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=98.07 E-value=8.5e-06 Score=59.12 Aligned_cols=72 Identities=24% Similarity=0.279 Sum_probs=61.9
Q ss_pred CCCCCEEEECCCCCCHHHHHHHHHHCCCCEEHHHHCCHHHHHHHHHHHHHCCCC-CCEEEECCCCCCCCCCCCCEEEE
Q ss_conf 666625860134688279999998616881005524989999999998750288-60882155434457232467896
Q gi|254780634|r 229 ITNSSQILDFCAGGGGKTLALSMLLNNKGQIHAWDNNKSRMAPIVARIKRAGIH-NVQLHSSWESLRNLQEHFTTVLV 305 (429)
Q Consensus 229 ~~~g~~vLD~CAapGGKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~-~v~~~~~~~~~~~~~~~fd~vl~ 305 (429)
.-.|.+|||+.||.|.=++.+|.+ ...|+|+|+++.=++..++++...|+. ||++...| +....+.||.|++
T Consensus 61 dl~G~rVLDaGCGtG~la~~LA~~---Ga~V~avDiS~~mi~~A~~Ra~~~g~~~~v~F~~gD--le~~~G~FD~Vv~ 133 (230)
T PRK07580 61 DLTGLSILDAGCGTGSLSIPLARR---GAKVVASDISPQMVEEARERAPEAGLDGNITFEVGD--LESLLGSFDTVVC 133 (230)
T ss_pred CCCCCEEEECCCCCCHHHHHHHHC---CCEEEEEECCHHHHHHHHHHHHHHCCCCCCEEEECC--CCCCCCCCCCHHH
T ss_conf 978998988187867879999977---998999838999999999755862787675389667--6545798660233
No 85
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=98.01 E-value=3.3e-05 Score=55.11 Aligned_cols=109 Identities=16% Similarity=0.204 Sum_probs=79.9
Q ss_pred CCCCCCCEEEECCCCCCHHHHHHHHHHCCCCEEHHHHCCHHHHHHHHHHHHHCCCCCCEEEECCCCCC--CCCCCCCEEE
Q ss_conf 36666625860134688279999998616881005524989999999998750288608821554344--5723246789
Q gi|254780634|r 227 TAITNSSQILDFCAGGGGKTLALSMLLNNKGQIHAWDNNKSRMAPIVARIKRAGIHNVQLHSSWESLR--NLQEHFTTVL 304 (429)
Q Consensus 227 l~~~~g~~vLD~CAapGGKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~~~~~~--~~~~~fd~vl 304 (429)
+..+.+.+|||+-||-|-.++-.+--.+ ...|++||+++.-++.+++|++..|+.++++...|+... .....||.|=
T Consensus 47 ~~~~~~~~ilDalsasGiR~iRy~~E~~-~~~v~~NDi~~~a~~~i~~N~~~N~~~~~~v~~~dAn~lm~~~~~~fD~ID 125 (376)
T PRK04338 47 FGPKRRKSVLDALSASGIRGIRYALETG-VEKVILNDINPDAVELIKKNLELNGLENAEVFNEDANVLLHENERKFDVVD 125 (376)
T ss_pred HHCCCCCEEEECCCCCCHHHHHHHHHCC-CCEEEEECCCHHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHCCCCCCEEE
T ss_conf 7420697687406765499999987279-987999569999999999999982998269813248999983787587786
Q ss_pred ECCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCH
Q ss_conf 62754450444442236672496789999998789999999960898389997758882
Q gi|254780634|r 305 VDAPCSGTGTWRRRPDIKWRLSQKNLIERTEEQKKILEESAQFVRPEGYLVYITCSILP 363 (429)
Q Consensus 305 ~DaPCSg~G~~rr~Pe~~w~~~~~~~~~~~~lQ~~iL~~a~~~lk~gG~lvYsTCS~~~ 363 (429)
+|+==| |. .-|+.|.+.++.|| |+|.|||=..
T Consensus 126 lDPfGS----------------p~----------pflDsAi~~v~~~G-lL~vTaTD~a 157 (376)
T PRK04338 126 IDPFGS----------------PA----------PFLDSAIRALRRGG-LLCVTATDTA 157 (376)
T ss_pred ECCCCC----------------CC----------HHHHHHHHHHHCCC-EEEEEECCCC
T ss_conf 789999----------------20----------87999999840398-8999946861
No 86
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase; InterPro: IPR014122 MenG is a generic term for a methyltransferase that catalyses the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species..
Probab=98.00 E-value=4.1e-05 Score=54.48 Aligned_cols=128 Identities=23% Similarity=0.361 Sum_probs=100.5
Q ss_pred CCCCCCCCCCCEEEECCCCCCHHHHHHHHHHCCCCEEHHHHCCHHHHHHHHHHHHHCCCCCCEEEECCC-CCCCCCCCCC
Q ss_conf 211236666625860134688279999998616881005524989999999998750288608821554-3445723246
Q gi|254780634|r 223 VSNLTAITNSSQILDFCAGGGGKTLALSMLLNNKGQIHAWDNNKSRMAPIVARIKRAGIHNVQLHSSWE-SLRNLQEHFT 301 (429)
Q Consensus 223 ~~~~l~~~~g~~vLD~CAapGGKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~~~-~~~~~~~~fd 301 (429)
....++++.|..+||.|||-+-=++.|++..+.+|.|...|.+++-|..-++..+...+.++.+..+.+ .++.....||
T Consensus 37 ~m~~m~v~~G~~~ldvCCGt~dW~~~l~~~~G~~G~v~Gldfs~nml~~~~~k~~~~~~~~~~l~hGnam~lP~~~~~fd 116 (231)
T TIGR02752 37 TMKRMNVQKGKKALDVCCGTADWAIALAEAVGKEGEVKGLDFSENMLSVGKQKVKDAKLSNVELVHGNAMELPYDDNSFD 116 (231)
T ss_pred HHHHHHHHHCCHHHHHCCCCHHHHHHHHHHHCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHEEEECCCHHCCCCCCCCCC
T ss_conf 98776564041211210373378889888617777167400358899999988875432002223052001787766612
Q ss_pred EEEECCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHCHHHHHH
Q ss_conf 78962754450444442236672496789999998789999999960898389997758882429998999
Q gi|254780634|r 302 TVLVDAPCSGTGTWRRRPDIKWRLSQKNLIERTEEQKKILEESAQFVRPEGYLVYITCSILPEENIQQINY 372 (429)
Q Consensus 302 ~vl~DaPCSg~G~~rr~Pe~~w~~~~~~~~~~~~lQ~~iL~~a~~~lk~gG~lvYsTCS~~~~Ene~vv~~ 372 (429)
.|-+- -|. |.-|| + .++|.+..+.+||||.+|-.-.|--.--.=.++-.
T Consensus 117 yvtiG-----fGl-rnvPd------------y----~~vl~em~rv~kPGG~~~C~~tsqP~~~~~~q~y~ 165 (231)
T TIGR02752 117 YVTIG-----FGL-RNVPD------------Y----MTVLKEMARVVKPGGKVVCLETSQPTLPGFKQLYF 165 (231)
T ss_pred EEEEC-----CCC-CCHHH------------H----HHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHH
T ss_conf 57752-----551-23026------------9----99999988862799717986257762579999999
No 87
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase; InterPro: IPR010233 This entry represents an O-methyltransferase, which is believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and mitochondria (COQ3) , . A separate methylase (MenG/UbiE) catalyses the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.; GO: 0008425 2-polyprenyl-6-methoxy-14-benzoquinone methyltransferase activity, 0006744 ubiquinone biosynthetic process.
Probab=97.99 E-value=1.2e-05 Score=58.24 Aligned_cols=120 Identities=18% Similarity=0.299 Sum_probs=87.6
Q ss_pred CCCCCCCCCEEEECCCCCCHHHHHHHHHHCCCCE-EHHHHCCHHHHHHHHHHHHHCCCC-----CCE--EEECCCCCCCC
Q ss_conf 1236666625860134688279999998616881-005524989999999998750288-----608--82155434457
Q gi|254780634|r 225 NLTAITNSSQILDFCAGGGGKTLALSMLLNNKGQ-IHAWDNNKSRMAPIVARIKRAGIH-----NVQ--LHSSWESLRNL 296 (429)
Q Consensus 225 ~~l~~~~g~~vLD~CAapGGKt~~la~~~~~~g~-i~A~D~~~~Rl~~l~~~~~r~g~~-----~v~--~~~~~~~~~~~ 296 (429)
.-++-.+|.+|||.-||.|==|=-||- ..+. |+++|.+++=++.++..+..-++. .|+ ..+..+.....
T Consensus 78 ~~~~~~~G~~vLDVGCGGGlLsE~lAR---~Ga~~V~GID~~~~~i~~Ak~Ha~~~~~~~~~~K~i~Y~~~~~E~l~~~~ 154 (275)
T TIGR01983 78 DELLKDSGLRVLDVGCGGGLLSEPLAR---LGANKVTGIDASEENIEVAKLHAKKDPLQEALDKKIEYRCTSVEELAEEQ 154 (275)
T ss_pred HHHHCCCCCEEEEECCCHHHHHHHHHH---CCCCEEEEEECHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 634117897799842785788899975---58842577521177999999888733402331111454443078873055
Q ss_pred --CCCCCEEEECCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHCHHHHHHHH
Q ss_conf --232467896275445044444223667249678999999878999999996089838999775888242999899999
Q gi|254780634|r 297 --QEHFTTVLVDAPCSGTGTWRRRPDIKWRLSQKNLIERTEEQKKILEESAQFVRPEGYLVYITCSILPEENIQQINYFL 374 (429)
Q Consensus 297 --~~~fd~vl~DaPCSg~G~~rr~Pe~~w~~~~~~~~~~~~lQ~~iL~~a~~~lk~gG~lvYsTCS~~~~Ene~vv~~fL 374 (429)
++.||.|++= .+-|.+.==.+++.+++++|||||.|+-|| ||+ ....+|+
T Consensus 155 h~~~~FD~V~~m----------------------EvlEHV~dp~~f~~~c~~llkPgG~lF~ST--INR----t~kS~~~ 206 (275)
T TIGR01983 155 HTKKSFDVVTCM----------------------EVLEHVPDPQAFIKACAQLLKPGGILFFST--INR----TPKSYLL 206 (275)
T ss_pred CCCCCCCEEEEE----------------------EEEECCCCHHHHHHHHHHHCCCCCCEEEEC--CCH----HHHHHHH
T ss_conf 784157337643----------------------200002788899999998508998489730--002----1899999
Q ss_pred H
Q ss_conf 8
Q gi|254780634|r 375 S 375 (429)
Q Consensus 375 ~ 375 (429)
.
T Consensus 207 a 207 (275)
T TIGR01983 207 A 207 (275)
T ss_pred H
T ss_conf 9
No 88
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities . Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity.
Probab=97.98 E-value=8.2e-06 Score=59.25 Aligned_cols=131 Identities=18% Similarity=0.234 Sum_probs=92.8
Q ss_pred CCCCCCC----CCCCEEEECCCCCCHHHHHHHHHHC--------CCCEEHHHHCCHHHHHHHHHHHHHCC----CCCCEE
Q ss_conf 2112366----6662586013468827999999861--------68810055249899999999987502----886088
Q gi|254780634|r 223 VSNLTAI----TNSSQILDFCAGGGGKTLALSMLLN--------NKGQIHAWDNNKSRMAPIVARIKRAG----IHNVQL 286 (429)
Q Consensus 223 ~~~~l~~----~~g~~vLD~CAapGGKt~~la~~~~--------~~g~i~A~D~~~~Rl~~l~~~~~r~g----~~~v~~ 286 (429)
++..+.+ +++.+|||+|||-|==|..++...+ +.+.|+..|+|++=|+..+++..-.+ ..|++.
T Consensus 31 ~~~~~~~~~E~k~~~~~LDvA~GTGD~a~~~~k~~~~~~~a~~~~~~~vtg~D~S~~ML~~a~kk~~~~~r~~~~~~~~f 110 (242)
T TIGR01934 31 AVKLIGVQLEGKKGQKVLDVACGTGDLAIELAKKAGKVGKAAETERAKVTGVDFSEEMLEVAKKKAPNEERKALSANVSF 110 (242)
T ss_pred HHHHHHHHCCCCCCCCEEEEECCHHHHHHHHHHHCCCCCCCCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCHH
T ss_conf 99987862368888977887238399999998635755533577633789870798899999874134200333216421
Q ss_pred EECCC-CCCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHH
Q ss_conf 21554-34457232467896275445044444223667249678999999878999999996089838999775888242
Q gi|254780634|r 287 HSSWE-SLRNLQEHFTTVLVDAPCSGTGTWRRRPDIKWRLSQKNLIERTEEQKKILEESAQFVRPEGYLVYITCSILPEE 365 (429)
Q Consensus 287 ~~~~~-~~~~~~~~fd~vl~DaPCSg~G~~rr~Pe~~w~~~~~~~~~~~~lQ~~iL~~a~~~lk~gG~lvYsTCS~~~~E 365 (429)
...++ .+|....+||.|=+ |=|. ..++..| +-|+++++-|||||.|| .|=+.+-.
T Consensus 111 ~~~dA~~LPF~D~sFD~~Ti-----aFGl----------------RN~~d~~-~aL~E~~RVLKpgG~l~--iLEf~~P~ 166 (242)
T TIGR01934 111 IEADAEALPFEDNSFDAVTI-----AFGL----------------RNVTDIQ-KALREMYRVLKPGGRLV--ILEFSKPA 166 (242)
T ss_pred EECHHHCCCCCCCCEEEEEE-----ECCC----------------CCCCCHH-HHHHHHHHCCCCCCEEE--EECCCCCC
T ss_conf 10005508799862444664-----0255----------------4746867-89877311018898799--84078676
Q ss_pred CHHHHHHHHHHC
Q ss_conf 999899999857
Q gi|254780634|r 366 NIQQINYFLSKN 377 (429)
Q Consensus 366 ne~vv~~fL~~~ 377 (429)
|-..++.|=+-+
T Consensus 167 ~~~~~~~~Y~~Y 178 (242)
T TIGR01934 167 NGAFLKKFYKFY 178 (242)
T ss_pred CHHHHHHHHHHH
T ss_conf 416889999988
No 89
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.97 E-value=4.3e-05 Score=54.33 Aligned_cols=135 Identities=18% Similarity=0.216 Sum_probs=94.8
Q ss_pred CCCCCCC--CCCCCCCCCCEEEECCCCCCHHHHHHHHHHCCCCEEHHHHCCHHHHHHHHHHHHHCCCCCCEEEECCCCCC
Q ss_conf 1556542--11236666625860134688279999998616881005524989999999998750288608821554344
Q gi|254780634|r 217 DEGSQIV--SNLTAITNSSQILDFCAGGGGKTLALSMLLNNKGQIHAWDNNKSRMAPIVARIKRAGIHNVQLHSSWESLR 294 (429)
Q Consensus 217 D~aSql~--~~~l~~~~g~~vLD~CAapGGKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~~~~~~ 294 (429)
+.++++. +.+.+.-.|..|+|+|||-|-=++ +...-+--+|+|+|+++.-++.+++|+.++ ..++.+...|..
T Consensus 29 ~~Aa~il~~a~~~g~l~g~~V~DlG~GTG~La~--ga~~lGa~~V~~vdiD~~a~ei~r~N~~~l-~g~v~f~~~dv~-- 103 (198)
T COG2263 29 PLAAYILWVAYLRGDLEGKTVLDLGAGTGILAI--GAALLGASRVLAVDIDPEALEIARANAEEL-LGDVEFVVADVS-- 103 (198)
T ss_pred HHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHH--HHHHCCCCEEEEEECCHHHHHHHHHHHHHH-CCCEEEEECCHH--
T ss_conf 899999999987388478888882788478899--998629717999936989999999888860-884699982101--
Q ss_pred CCCCCCCEEEECCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHCHHHHHHHH
Q ss_conf 57232467896275445044444223667249678999999878999999996089838999775888242999899999
Q gi|254780634|r 295 NLQEHFTTVLVDAPCSGTGTWRRRPDIKWRLSQKNLIERTEEQKKILEESAQFVRPEGYLVYITCSILPEENIQQINYFL 374 (429)
Q Consensus 295 ~~~~~fd~vl~DaPCSg~G~~rr~Pe~~w~~~~~~~~~~~~lQ~~iL~~a~~~lk~gG~lvYsTCS~~~~Ene~vv~~fL 374 (429)
...++||.|+-+.|- |+++||+|...- +.|.+.- ..|||- ...-+++-++.+-
T Consensus 104 ~~~~~~dtvimNPPF---G~~~rhaDr~Fl-----------------~~Ale~s----~vVYsi---H~a~~~~f~~~~~ 156 (198)
T COG2263 104 DFRGKFDTVIMNPPF---GSQRRHADRPFL-----------------LKALEIS----DVVYSI---HKAGSRDFVEKFA 156 (198)
T ss_pred HCCCCCCEEEECCCC---CCCCCCCCHHHH-----------------HHHHHHH----HEEEEE---ECCCCHHHHHHHH
T ss_conf 147766669978997---322136888999-----------------9999740----147874---0166079999998
Q ss_pred HHCCCCEEE
Q ss_conf 857997994
Q gi|254780634|r 375 SKNPHFSID 383 (429)
Q Consensus 375 ~~~~~~~~~ 383 (429)
+.+......
T Consensus 157 ~~~G~~v~~ 165 (198)
T COG2263 157 ADLGGTVTH 165 (198)
T ss_pred HHCCCEEEE
T ss_conf 854970899
No 90
>pfam03602 Cons_hypoth95 Conserved hypothetical protein 95.
Probab=97.93 E-value=2.9e-05 Score=55.51 Aligned_cols=106 Identities=20% Similarity=0.301 Sum_probs=73.3
Q ss_pred CCCEEEECCCCCCHHHHHHHHHHCCCCEEHHHHCCHHHHHHHHHHHHHCCCCCCEEEECCC----CCCCCCCCCCEEEEC
Q ss_conf 6625860134688279999998616881005524989999999998750288608821554----344572324678962
Q gi|254780634|r 231 NSSQILDFCAGGGGKTLALSMLLNNKGQIHAWDNNKSRMAPIVARIKRAGIHNVQLHSSWE----SLRNLQEHFTTVLVD 306 (429)
Q Consensus 231 ~g~~vLD~CAapGGKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~~~----~~~~~~~~fd~vl~D 306 (429)
.|..|||+|||-|.=.+-- +-.+...++.+|.+.+-++.+++|++.++..+..+...+. ......+.||.|++|
T Consensus 43 ~~~~~LDLFaGSGslglEA--lSRGA~~v~fvE~~~~a~~~i~~N~~~l~~~~~~~~~~~~~~~~~~~~~~~~fdiIF~D 120 (181)
T pfam03602 43 GGARVLDLFAGSGALGLEA--LSRGASSVVFVEKDKKAVATLKENLEALGLEGAVLRMDAARALLRLAGKGPPFDLVFLD 120 (181)
T ss_pred CCCEEEECCCCCCHHHHHH--HHCCCCEEEEEECCHHHHHHHHHHHHHHCCCCEEEECCHHHHHHHHCCCCCCCCEEECC
T ss_conf 8987998278726989999--97699889999699999999999999858997799810899998753357888766359
Q ss_pred CCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEC
Q ss_conf 75445044444223667249678999999878999999996089838999775
Q gi|254780634|r 307 APCSGTGTWRRRPDIKWRLSQKNLIERTEEQKKILEESAQFVRPEGYLVYITC 359 (429)
Q Consensus 307 aPCSg~G~~rr~Pe~~w~~~~~~~~~~~~lQ~~iL~~a~~~lk~gG~lvYsTC 359 (429)
+|=... . +..+-..|.. ..+++++|.+|+=+=
T Consensus 121 PPY~~~----------------~---~~~~l~~l~~--~~~l~~~~iiiiE~~ 152 (181)
T pfam03602 121 PPYAKG----------------L---IEEALELLAE--KGWLNPNALIVVETE 152 (181)
T ss_pred CCCCCH----------------H---HHHHHHHHHH--CCCCCCCEEEEEEEC
T ss_conf 975420----------------6---9999999996--666579809999966
No 91
>KOG2915 consensus
Probab=97.92 E-value=3.5e-05 Score=54.93 Aligned_cols=88 Identities=17% Similarity=0.290 Sum_probs=74.3
Q ss_pred CCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHCCCCEEHHHHCCHHHHHHHHHHHHHCCCC-CCEEEECCC---CCCCCC
Q ss_conf 4211236666625860134688279999998616881005524989999999998750288-608821554---344572
Q gi|254780634|r 222 IVSNLTAITNSSQILDFCAGGGGKTLALSMLLNNKGQIHAWDNNKSRMAPIVARIKRAGIH-NVQLHSSWE---SLRNLQ 297 (429)
Q Consensus 222 l~~~~l~~~~g~~vLD~CAapGGKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~-~v~~~~~~~---~~~~~~ 297 (429)
++...|+..||.+|+....|.|+=|..|+-..+.+|.++..|.|..|.+...+..++.|+. |+.+...|- ...-..
T Consensus 96 ~I~~~L~i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi~~~vt~~hrDVc~~GF~~ks 175 (314)
T KOG2915 96 MILSMLEIRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGIGDNVTVTHRDVCGSGFLIKS 175 (314)
T ss_pred HHHHHHCCCCCCEEEECCCCCCHHHHHHHHHHCCCCCEEEEEECHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCC
T ss_conf 99998657999789863788634889999863767626999832878999999999737786348999641567735313
Q ss_pred CCCCEEEECCCC
Q ss_conf 324678962754
Q gi|254780634|r 298 EHFTTVLVDAPC 309 (429)
Q Consensus 298 ~~fd~vl~DaPC 309 (429)
.++|.|+||.|-
T Consensus 176 ~~aDaVFLDlPa 187 (314)
T KOG2915 176 LKADAVFLDLPA 187 (314)
T ss_pred CCCCEEEECCCC
T ss_conf 423569975898
No 92
>pfam05401 NodS Nodulation protein S (NodS). This family consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors.
Probab=97.91 E-value=0.00011 Score=51.47 Aligned_cols=114 Identities=18% Similarity=0.206 Sum_probs=88.0
Q ss_pred CCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHCCCCEEHHHHCCHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCC
Q ss_conf 65421123666662586013468827999999861688100552498999999999875028860882155434457232
Q gi|254780634|r 220 SQIVSNLTAITNSSQILDFCAGGGGKTLALSMLLNNKGQIHAWDNNKSRMAPIVARIKRAGIHNVQLHSSWESLRNLQEH 299 (429)
Q Consensus 220 Sql~~~~l~~~~g~~vLD~CAapGGKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~~~~~~~~~~~ 299 (429)
.|+....|.-..-.++|...||-|-=|-.||.+.. .++|+|+++.-+...++|+. +..||.+...+.......++
T Consensus 32 ~~~l~aaLp~~ry~~alE~GCa~G~lT~~LA~RCd---rLla~Dvs~~Av~~Ar~Rla--~~~hV~v~~~~vp~~wP~~~ 106 (201)
T pfam05401 32 TQMLRLSLAQGTIANALEVGCAAGAFTERLAPYCQ---RLTVIDVMPEAIARARLRMK--KWSHISWIVSDVQQFSTNEL 106 (201)
T ss_pred HHHHHHHCCCHHHHHHCCCCCCCCHHHHHHHHHHH---HHHHHCCCHHHHHHHHHHHC--CCCCCEEEECCCCCCCCCCC
T ss_conf 99999867834330020435662487899999874---67321362999999999855--79982898256666599888
Q ss_pred CCEEEECCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 4678962754450444442236672496789999998789999999960898389997
Q gi|254780634|r 300 FTTVLVDAPCSGTGTWRRRPDIKWRLSQKNLIERTEEQKKILEESAQFVRPEGYLVYI 357 (429)
Q Consensus 300 fd~vl~DaPCSg~G~~rr~Pe~~w~~~~~~~~~~~~lQ~~iL~~a~~~lk~gG~lvYs 357 (429)
||.|.+- |+-|.+ .|+.++ +.++.+...+|.|||.||+.
T Consensus 107 FDLIV~S-------------EVlYYL--~d~a~l----r~~~~~~v~~LaP~G~Lvfg 145 (201)
T pfam05401 107 FDLIVVA-------------EVLYYL--GDVAEM----RGAVRNLVSMLAPDGQLVFG 145 (201)
T ss_pred EEEEEEE-------------HHHHHH--CCHHHH----HHHHHHHHHHHCCCCEEEEE
T ss_conf 6279751-------------477861--879999----99999999971899659973
No 93
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=97.90 E-value=4.1e-05 Score=54.49 Aligned_cols=111 Identities=19% Similarity=0.358 Sum_probs=73.6
Q ss_pred CCCC--CCCCEEEECCCCCCHHHHHHHHHHCCCCEEHHHHCCHHHHHHHHHHHHHCCCC-CCEEEECCCC--CCCCCC--
Q ss_conf 2366--66625860134688279999998616881005524989999999998750288-6088215543--445723--
Q gi|254780634|r 226 LTAI--TNSSQILDFCAGGGGKTLALSMLLNNKGQIHAWDNNKSRMAPIVARIKRAGIH-NVQLHSSWES--LRNLQE-- 298 (429)
Q Consensus 226 ~l~~--~~g~~vLD~CAapGGKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~-~v~~~~~~~~--~~~~~~-- 298 (429)
++.+ -.|.+|||+|||.|+=.+-- +-.+-..++.+|.+.+=.+.+++|++.++.. ++.+...+.. +.....
T Consensus 36 il~~~~i~g~~~LDlFAGSGaLGlEA--lSRGA~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~~~L~~~~~~~ 113 (187)
T COG0742 36 ILAPDEIEGARVLDLFAGSGALGLEA--LSRGAARVVFVEKDRKAVKILKENLKALGLEGEARVLRNDALRALKQLGTRE 113 (187)
T ss_pred HCCCCCCCCCEEEEECCCCCHHHHHH--HHCCCCEEEEEECCHHHHHHHHHHHHHHCCCCCEEEEEECHHHHHHHCCCCC
T ss_conf 73434457988999468764768999--8578856999965989999999999984876125998400899987227788
Q ss_pred CCCEEEECCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHH-HHHHHHHHCCCCEEEEEE
Q ss_conf 246789627544504444422366724967899999987899-999999608983899977
Q gi|254780634|r 299 HFTTVLVDAPCSGTGTWRRRPDIKWRLSQKNLIERTEEQKKI-LEESAQFVRPEGYLVYIT 358 (429)
Q Consensus 299 ~fd~vl~DaPCSg~G~~rr~Pe~~w~~~~~~~~~~~~lQ~~i-L~~a~~~lk~gG~lvYsT 358 (429)
.||.|++|+|-- .|.+ ..+..+ +...-.+|+|+|.+|-=+
T Consensus 114 ~FDlVflDPPy~-~~l~-------------------~~~~~~~~~~~~~~L~~~~~iv~E~ 154 (187)
T COG0742 114 PFDLVFLDPPYA-KGLL-------------------DKELALLLLEENGWLKPGALIVVEH 154 (187)
T ss_pred CCCEEEECCCCC-CCHH-------------------HHHHHHHHHHHCCCCCCCCEEEEEE
T ss_conf 512899689975-3606-------------------6899998887658778896899982
No 94
>PRK04266 fibrillarin; Provisional
Probab=97.89 E-value=0.00083 Score=45.62 Aligned_cols=131 Identities=21% Similarity=0.296 Sum_probs=85.9
Q ss_pred CCCCCCCEEEECCCCCCHHHHHHHHHHCCCCEEHHHHCCHHHHHHHHHHHH-HCCCCCCEEEECCCC---CCCCCCCCCE
Q ss_conf 366666258601346882799999986168810055249899999999987-502886088215543---4457232467
Q gi|254780634|r 227 TAITNSSQILDFCAGGGGKTLALSMLLNNKGQIHAWDNNKSRMAPIVARIK-RAGIHNVQLHSSWES---LRNLQEHFTT 302 (429)
Q Consensus 227 l~~~~g~~vLD~CAapGGKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~-r~g~~~v~~~~~~~~---~~~~~~~fd~ 302 (429)
+.++||.+||=+.||-|+--.|+++..+ +|.|+|+|.++.=+..|..-++ |-++ +-+..+... ...+-+..|.
T Consensus 68 ~~i~~gskVLYLGAasGTTVSHvsDiV~-~G~VyAVE~spr~~RdL~~la~~R~Ni--vPIl~DAr~P~~Y~~~v~~VD~ 144 (226)
T PRK04266 68 FPIKKGSKVLYLGAASGTTVSHVSDIVE-EGRVYAVEFAPRVMRELLLVAEERKNI--IPILGDARKPEEYAHLVEKVDV 144 (226)
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHCC-CCEEEEEEECCHHHHHHHHHHHHCCCC--EEEECCCCCHHHHHHHCCCCCE
T ss_conf 6758998799954777984888987517-964999982707789999998508996--2575467884564420565658
Q ss_pred EEECCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH-HHHCCCCEEEE--EECCCCHHHCH-HHHHHHHHH--
Q ss_conf 8962754450444442236672496789999998789999999-96089838999--77588824299-989999985--
Q gi|254780634|r 303 VLVDAPCSGTGTWRRRPDIKWRLSQKNLIERTEEQKKILEESA-QFVRPEGYLVY--ITCSILPEENI-QQINYFLSK-- 376 (429)
Q Consensus 303 vl~DaPCSg~G~~rr~Pe~~w~~~~~~~~~~~~lQ~~iL~~a~-~~lk~gG~lvY--sTCS~~~~Ene-~vv~~fL~~-- 376 (429)
|+.|+. +.-|.+|+...+ .+||+||.++- =+-|+.-.++. ++.+.-.++
T Consensus 145 i~qDvA-------------------------Q~dQa~I~~~Na~~FLk~gG~~~l~iKA~Sid~t~~p~~vf~~~~~~L~ 199 (226)
T PRK04266 145 IYQDVA-------------------------QPNQAEIAADNADIFLKPGGYLMLAIKARSIDVTKDPKEIFKEEIKKLE 199 (226)
T ss_pred EEEECC-------------------------CHHHHHHHHHHHHHHHHCCCEEEEEEEEEEEECCCCHHHHHHHHHHHHH
T ss_conf 996067-------------------------7428999999999860159889999974235646898999999999998
Q ss_pred CCCCEEEEC
Q ss_conf 799799414
Q gi|254780634|r 377 NPHFSIDSI 385 (429)
Q Consensus 377 ~~~~~~~~~ 385 (429)
..+|++.+.
T Consensus 200 ~~~~~~~e~ 208 (226)
T PRK04266 200 EGGFEILEV 208 (226)
T ss_pred HCCCCEEEE
T ss_conf 769966899
No 95
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=97.89 E-value=3.7e-05 Score=54.81 Aligned_cols=159 Identities=13% Similarity=0.247 Sum_probs=108.0
Q ss_pred CCCEEEEECCCCCCCCCCC---------C----------CCCCCEEEECCCCCCHHHHHHHHHHCCCCEEHHHHCCHHHH
Q ss_conf 2654898415565421123---------6----------66662586013468827999999861688100552498999
Q gi|254780634|r 209 QRGWFEIQDEGSQIVSNLT---------A----------ITNSSQILDFCAGGGGKTLALSMLLNNKGQIHAWDNNKSRM 269 (429)
Q Consensus 209 ~~G~~~VQD~aSql~~~~l---------~----------~~~g~~vLD~CAapGGKt~~la~~~~~~g~i~A~D~~~~Rl 269 (429)
..-.++|+.-+..+-+.+- | --.|.++|.+.|=-|.=|.|-| . ++....+++|.|..=+
T Consensus 511 ~~~~~~v~E~~~~f~vNl~dYlDtGLFLDhR~~R~~i~~~a~gk~fLNLF~YTgt~sv~Aa-~-gGA~~t~sVD~S~tyl 588 (716)
T PRK11783 511 KGEFLIVTEYGAKLWVNLTDYLDTGLFLDHRPTRRMIGQMAKGKRFLNLFAYTGTASVHAA-L-GGAKSTTTVDMSNTYL 588 (716)
T ss_pred CCCEEEEEECCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEEEECCCCEEHHHH-H-CCCCEEEEECCCHHHH
T ss_conf 7876999957868999777202267454437999999997078846431222561021335-2-7961227862708799
Q ss_pred HHHHHHHHHCCCCC--CEEEECC--CCCCCCCCCCCEEEECCCC-CCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
Q ss_conf 99999987502886--0882155--4344572324678962754-45044444223667249678999999878999999
Q gi|254780634|r 270 APIVARIKRAGIHN--VQLHSSW--ESLRNLQEHFTTVLVDAPC-SGTGTWRRRPDIKWRLSQKNLIERTEEQKKILEES 344 (429)
Q Consensus 270 ~~l~~~~~r~g~~~--v~~~~~~--~~~~~~~~~fd~vl~DaPC-Sg~G~~rr~Pe~~w~~~~~~~~~~~~lQ~~iL~~a 344 (429)
.=.++|+...|+.. -++...| ..+....+.||.|++|+|- |.+-. .++.-..+.=+..|+..+
T Consensus 589 ~Wa~~N~~lN~~~~~~h~~v~aD~~~wl~~~~~~fDli~~DPPtFSnSk~------------m~~~~dvqrDh~~li~~~ 656 (716)
T PRK11783 589 EWAERNFALNGLSGRQHRFIQADCLAWLKEAREQFDLIFIDPPTFSNSKR------------MEDSFDVQRDHVALIKLA 656 (716)
T ss_pred HHHHHHHHHCCCCCCCCEEEECCHHHHHHHCCCCCCEEEECCCCCCCCCC------------CCCCCCCCCCHHHHHHHH
T ss_conf 99999998549996347389640899998577766789988999987666------------788632203099999999
Q ss_pred HHHHCCCCEEEEEECCCCHHHCHHHHHHHHHHCCCCEEEECC
Q ss_conf 996089838999775888242999899999857997994143
Q gi|254780634|r 345 AQFVRPEGYLVYITCSILPEENIQQINYFLSKNPHFSIDSII 386 (429)
Q Consensus 345 ~~~lk~gG~lvYsTCS~~~~Ene~vv~~fL~~~~~~~~~~~~ 386 (429)
.++|+|||.|++||=.=.=.=+++.+.. .+|.+.++.
T Consensus 657 ~~~L~~~G~l~FS~N~r~F~ld~~~l~~-----~~~~~~dit 693 (716)
T PRK11783 657 MRLLRPGGTLYFSNNKRGFKMDEEGLAK-----LGLAVEEIT 693 (716)
T ss_pred HHHCCCCCEEEEECCCCCCCCCHHHHHH-----CCCEEEECC
T ss_conf 9860899689996288763428767521-----596068775
No 96
>pfam08241 Methyltransf_11 Methyltransferase domain. Members of this family are SAM dependent methyltransferases.
Probab=97.88 E-value=5.7e-05 Score=53.50 Aligned_cols=93 Identities=28% Similarity=0.329 Sum_probs=66.0
Q ss_pred EECCCCCCHHHHHHHHHHCCCCEEHHHHCCHHHHHHHHHHHHHCCCCCCEEEECCC-CCCCCCCCCCEEEECCCCCCCHH
Q ss_conf 60134688279999998616881005524989999999998750288608821554-34457232467896275445044
Q gi|254780634|r 236 LDFCAGGGGKTLALSMLLNNKGQIHAWDNNKSRMAPIVARIKRAGIHNVQLHSSWE-SLRNLQEHFTTVLVDAPCSGTGT 314 (429)
Q Consensus 236 LD~CAapGGKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~~~-~~~~~~~~fd~vl~DaPCSg~G~ 314 (429)
||++||.|.-+..+++. ....++++|+++.=++.++++....++ .+...+. ..+...++||.|++ .++
T Consensus 1 LDiGcG~G~~~~~l~~~--~~~~v~giD~s~~~i~~a~~~~~~~~~---~~~~~d~~~~~~~~~~fD~I~~------~~~ 69 (95)
T pfam08241 1 LDVGCGTGLLTEALARL--PGAQVTGVDLSPEMLALARKRAQEDGL---TFVVGDAEDLPFPDESFDVVVS------SLV 69 (95)
T ss_pred CCCCCCCCHHHHHHHHC--CCCEEEEEECCHHHHHHHHHHCCCCCC---EEEEECCCCCCCCCCCCCEEEE------CCC
T ss_conf 96462499999999845--799999994978998776631026694---7998033246755456859998------330
Q ss_pred HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEE
Q ss_conf 44422366724967899999987899999999608983899
Q gi|254780634|r 315 WRRRPDIKWRLSQKNLIERTEEQKKILEESAQFVRPEGYLV 355 (429)
Q Consensus 315 ~rr~Pe~~w~~~~~~~~~~~~lQ~~iL~~a~~~lk~gG~lv 355 (429)
+..-+| ..+++.++.+.|||||+++
T Consensus 70 l~~~~~----------------~~~~l~~~~r~LkpgG~l~ 94 (95)
T pfam08241 70 LHHLPD----------------PERALREIARVLKPGGKLV 94 (95)
T ss_pred HHHCCC----------------HHHHHHHHHHHCCCCEEEE
T ss_conf 664689----------------9999999998778694997
No 97
>pfam02005 TRM N2,N2-dimethylguanosine tRNA methyltransferase. This enzyme EC:2.1.1.32 used S-AdoMet to methylate tRNA. The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs. The enzyme is found in both eukaryotes and archaebacteria
Probab=97.88 E-value=0.00017 Score=50.36 Aligned_cols=107 Identities=17% Similarity=0.247 Sum_probs=77.6
Q ss_pred CCCCEEEECCCCCCHHHHHHHHHHCCCCEEHHHHCCHHHHHHHHHHHHHCCCCCC-EEEECCCCC--CCCCCCCCEEEEC
Q ss_conf 6662586013468827999999861688100552498999999999875028860-882155434--4572324678962
Q gi|254780634|r 230 TNSSQILDFCAGGGGKTLALSMLLNNKGQIHAWDNNKSRMAPIVARIKRAGIHNV-QLHSSWESL--RNLQEHFTTVLVD 306 (429)
Q Consensus 230 ~~g~~vLD~CAapGGKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v-~~~~~~~~~--~~~~~~fd~vl~D 306 (429)
..+-+|||+-||-|-.++-.+--..+...|++||+++.-++.+++|++..++.+. .+...|+.. ......||.|=+|
T Consensus 48 ~~~~~iLDalsasGiR~iRya~E~~~~~~V~~NDi~~~a~~~i~~N~~lN~~~~~~~~~~~DAn~lm~~~~~~fD~IDlD 127 (375)
T pfam02005 48 GRGIIVLDALSASGIRAIRFALEVPGVEEVFANDISPKAVELIKENVKLNEVENIVVINGDDANMLMRENHRRFDVIDLD 127 (375)
T ss_pred CCCCEEEECCCCCHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHHCCCCCEEEECHHHHHHHHHHCCCCCCEEEEC
T ss_conf 58866975467541999999974699866999559989999999988865998737875475999998558867568678
Q ss_pred CCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCH
Q ss_conf 754450444442236672496789999998789999999960898389997758882
Q gi|254780634|r 307 APCSGTGTWRRRPDIKWRLSQKNLIERTEEQKKILEESAQFVRPEGYLVYITCSILP 363 (429)
Q Consensus 307 aPCSg~G~~rr~Pe~~w~~~~~~~~~~~~lQ~~iL~~a~~~lk~gG~lvYsTCS~~~ 363 (429)
+==| |. .-|+.|.+.++.|| |+|.|||=..
T Consensus 128 PfGS----------------p~----------pfldsAi~av~~~G-lL~vTaTD~a 157 (375)
T pfam02005 128 PFGS----------------PA----------PFLDSAVQSVKRGG-LLCVTATDTA 157 (375)
T ss_pred CCCC----------------CC----------HHHHHHHHHHCCCC-EEEEEECCCH
T ss_conf 9999----------------21----------77999999831598-8999944633
No 98
>PTZ00146 fibrillarin; Provisional
Probab=97.82 E-value=0.00062 Score=46.48 Aligned_cols=131 Identities=17% Similarity=0.176 Sum_probs=89.9
Q ss_pred CCCCCCCEEEECCCCCCHHHHHHHHHHCCCCEEHHHHCCHHHHHHHHHHHHHCCCCCCE-EEECCCCCC----CCCCCCC
Q ss_conf 36666625860134688279999998616881005524989999999998750288608-821554344----5723246
Q gi|254780634|r 227 TAITNSSQILDFCAGGGGKTLALSMLLNNKGQIHAWDNNKSRMAPIVARIKRAGIHNVQ-LHSSWESLR----NLQEHFT 301 (429)
Q Consensus 227 l~~~~g~~vLD~CAapGGKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~-~~~~~~~~~----~~~~~fd 301 (429)
+..+||.+||=+-||-|+--.|+++....+|.|+|+|.++.-...|..-+++- .||. +.. |+..+ .+-+..|
T Consensus 131 i~Ik~GskVLYLGAasGTTVSHVSDIVG~~G~VYAVEfSpr~~RdLl~lA~~R--~NIvPIle-DAr~P~kYr~lV~~VD 207 (296)
T PTZ00146 131 IPIKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLVEMAKRR--TNIVPIIE-DARYPQKYRMLVPMVD 207 (296)
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHCCCCCEEEEEEECCHHHHHHHHHHHCC--CCCEEEEC-CCCCHHHHHHHCCCCC
T ss_conf 44379998998514679865566650178861999970646688999997227--98335777-7897467554245555
Q ss_pred EEEECCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-HHHHHHHCCCCEEEEE---ECCCCHHHCHHHHHHHHHHC
Q ss_conf 7896275445044444223667249678999999878999-9999960898389997---75888242999899999857
Q gi|254780634|r 302 TVLVDAPCSGTGTWRRRPDIKWRLSQKNLIERTEEQKKIL-EESAQFVRPEGYLVYI---TCSILPEENIQQINYFLSKN 377 (429)
Q Consensus 302 ~vl~DaPCSg~G~~rr~Pe~~w~~~~~~~~~~~~lQ~~iL-~~a~~~lk~gG~lvYs---TCS~~~~Ene~vv~~fL~~~ 377 (429)
.|+.|+.=. -|.+|+ .+|-.+||+||.++-| .|-=...+.++|.+.-.++-
T Consensus 208 vIf~DVAQp-------------------------dQarI~~~Na~~FLK~gG~~~i~IKArsIDst~~p~~VF~~Ev~kL 262 (296)
T PTZ00146 208 CIFADVAQP-------------------------DQARIVALNAQHFLKNGGHFVISIKANCIDSTADPEVVFASEVQKL 262 (296)
T ss_pred EEEECCCCH-------------------------HHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCHHHHHHHHHHHH
T ss_conf 899617876-------------------------5899999999985316988999997266325679899999999999
Q ss_pred --CCCEEEEC
Q ss_conf --99799414
Q gi|254780634|r 378 --PHFSIDSI 385 (429)
Q Consensus 378 --~~~~~~~~ 385 (429)
..|++.+.
T Consensus 263 ~~~~f~~~e~ 272 (296)
T PTZ00146 263 KKEGLKPKEQ 272 (296)
T ss_pred HHCCCCEEEE
T ss_conf 8728963688
No 99
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=97.75 E-value=0.00028 Score=48.86 Aligned_cols=141 Identities=16% Similarity=0.220 Sum_probs=103.4
Q ss_pred CCCCEEEECCCCCCHHHHHHHHHHCCCCEEHHHHCCHHHHHHHHHHHHHCCCCCCEEEECCCCC--CC--CCCCCCEEEE
Q ss_conf 6662586013468827999999861688100552498999999999875028860882155434--45--7232467896
Q gi|254780634|r 230 TNSSQILDFCAGGGGKTLALSMLLNNKGQIHAWDNNKSRMAPIVARIKRAGIHNVQLHSSWESL--RN--LQEHFTTVLV 305 (429)
Q Consensus 230 ~~g~~vLD~CAapGGKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~~~~~--~~--~~~~fd~vl~ 305 (429)
.....+||.++|-|.-++++|..-.+ -..+++|++...+..+...+...++.|+.+...|+.. .. ..+.+|.|.+
T Consensus 53 ~~~p~~lEIGfG~G~~l~~~A~~~P~-~~fIGiE~~~~gv~~~~~~~~~~~l~Ni~i~~~da~~~l~~~~~~~s~~~i~i 131 (229)
T PRK00121 53 NDAPIHLEIGFGRGEFLVEMAKANPD-INFIGIEIHEPGVAKALKKIEEAGLKNLRLLCGDAVEVLEHFLPDGSLDRIYL 131 (229)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHCCC-CCEEEEEEEHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHCCCCCCCEEEE
T ss_conf 99943999615896999999986888-86899996169999999999982998389883478999997146454140467
Q ss_pred CCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHCHHHHHHHHHHCCCCEEEEC
Q ss_conf 27544504444422366724967899999987899999999608983899977588824299989999985799799414
Q gi|254780634|r 306 DAPCSGTGTWRRRPDIKWRLSQKNLIERTEEQKKILEESAQFVRPEGYLVYITCSILPEENIQQINYFLSKNPHFSIDSI 385 (429)
Q Consensus 306 DaPCSg~G~~rr~Pe~~w~~~~~~~~~~~~lQ~~iL~~a~~~lk~gG~lvYsTCS~~~~Ene~vv~~fL~~~~~~~~~~~ 385 (429)
==|.- |-|.-+.|. --+|...|+...+.|++||.+.-+|=.-.-. +.+...+..+++|+....
T Consensus 132 ~FPDP----WpKkrH~KR----------Rli~~~fl~~~~~~Lk~~G~i~~~TD~~~Y~---~~~~e~~~~~~~f~~~~~ 194 (229)
T PRK00121 132 NFPDP----WPKKRHHKR----------RLVQPEFLELYARVLKPGGEFHFATDWEEYA---EYMLEVFGAHPGFKNLDL 194 (229)
T ss_pred CCCCC----CCCCCCCCC----------CCCCHHHHHHHHHHCCCCCEEEEEECCHHHH---HHHHHHHHHCCCCEECCC
T ss_conf 17999----976320240----------1289999999998579998899981879999---999999986869374267
Q ss_pred CCC
Q ss_conf 300
Q gi|254780634|r 386 IDD 388 (429)
Q Consensus 386 ~~~ 388 (429)
...
T Consensus 195 ~~~ 197 (229)
T PRK00121 195 ADD 197 (229)
T ss_pred CCC
T ss_conf 877
No 100
>KOG1270 consensus
Probab=97.68 E-value=0.0004 Score=47.80 Aligned_cols=107 Identities=21% Similarity=0.285 Sum_probs=77.4
Q ss_pred CCCCCCEEEECCCCCCHHHHHHHHHHCCCCEEHHHHCCHHHHHHHHHHHHHCCCCC----CEEEECCCCCCCCCCCCCEE
Q ss_conf 66666258601346882799999986168810055249899999999987502886----08821554344572324678
Q gi|254780634|r 228 AITNSSQILDFCAGGGGKTLALSMLLNNKGQIHAWDNNKSRMAPIVARIKRAGIHN----VQLHSSWESLRNLQEHFTTV 303 (429)
Q Consensus 228 ~~~~g~~vLD~CAapGGKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~----v~~~~~~~~~~~~~~~fd~v 303 (429)
-|-.|++|||..||-|==|-+||-+ ...|+++|+++.=++..++...-.=..+ ..+.-.+.......++||.|
T Consensus 86 k~~~g~~ilDvGCGgGLLSepLArl---ga~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~~~~fDaV 162 (282)
T KOG1270 86 KPLLGMKILDVGCGGGLLSEPLARL---GAQVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGLTGKFDAV 162 (282)
T ss_pred CCCCCCEEEEECCCCCCCCHHHHHH---CCEEEEECCHHHHHHHHHHHHHCCCHHCCCCCEEEEHHHCCHHHCCCCCCEE
T ss_conf 4557864787236755023235750---8856852655999999987510490330564146302015332145656454
Q ss_pred EECCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEC
Q ss_conf 96275445044444223667249678999999878999999996089838999775
Q gi|254780634|r 304 LVDAPCSGTGTWRRRPDIKWRLSQKNLIERTEEQKKILEESAQFVRPEGYLVYITC 359 (429)
Q Consensus 304 l~DaPCSg~G~~rr~Pe~~w~~~~~~~~~~~~lQ~~iL~~a~~~lk~gG~lvYsTC 359 (429)
.+ | ++-+.++--.++|...++.|||||.|+-+|=
T Consensus 163 vc----s------------------evleHV~dp~~~l~~l~~~lkP~G~lfitti 196 (282)
T KOG1270 163 VC----S------------------EVLEHVKDPQEFLNCLSALLKPNGRLFITTI 196 (282)
T ss_pred EE----H------------------HHHHHHHCHHHHHHHHHHHHCCCCCEEEEEH
T ss_conf 41----9------------------8999874789999999998488982586411
No 101
>cd00619 Terminator_NusB Transcription termination factor NusB (N protein-Utilization Substance B). NusB plays a key role in the regulation of ribosomal RNA biosynthesis in eubacteria by modulating the efficiency of transcriptional antitermination. NusB along with other Nus factors (NusA, NusE/S10 and NusG) forms the core complex with the boxA element of the nut site of the rRNA operons. These interactions help RNA polymerase to counteract polarity during transcription of rRNA operons and allow stable antitermination. The transcription antitermination system can be appropriated by some bacteriophages such as lambda, which use the system to switch between the lysogenic and lytic modes of phage propagation.
Probab=97.65 E-value=0.0014 Score=44.15 Aligned_cols=108 Identities=10% Similarity=0.060 Sum_probs=72.5
Q ss_pred CHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC-----------H
Q ss_conf 71689999999999999569978999999998685889557999999999999758999997056896-----------7
Q gi|254780634|r 2 RLGGQIAAAIEILKDIRTHKKPITNSLKDWGMSHRFAGSSDRASISNIVHDVLRKYLSSAYIMDSDDP-----------E 70 (429)
Q Consensus 2 ~~~aR~~AA~eiL~~v~~~~~~ad~~L~~~~~~~r~lgs~DR~~i~~lvyg~lR~~~~ld~il~~~~~-----------r 70 (429)
|-.||. .|+++|.+...++.+++.++..+.. ....+..|+.|++++++|+++++..+|.++++..+ +
T Consensus 1 R~~aRe-~a~q~LYq~~~~~~~~~~i~~~~~~-~~~~~~~d~~f~~~l~~gv~~~~~~iD~~I~~~l~~w~~~rl~~i~~ 78 (130)
T cd00619 1 RRRARE-LAVQALYAWELAPEILAEVVSLLEL-LQYKSKKVLPFALKLVRGVLENIEEIDELIEKHLRNWSLDRLAIVER 78 (130)
T ss_pred CCHHHH-HHHHHHHHHHCCCCCHHHHHHHHHH-HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHCCHHHH
T ss_conf 919999-9999999967079999999999987-51133468999999999999849999999998718999676679999
Q ss_pred HHH-HHH--HHHHCCCCHHHHHHHHHHHHHC-CCCCHHHHHHHHH
Q ss_conf 999-999--9974388989999988543303-4332046775442
Q gi|254780634|r 71 SLV-YAV--IMKDWDIPWEKMLSMLKEDLFS-PPLPKESVIKSFH 111 (429)
Q Consensus 71 ~~~-~~~--l~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~~~~~~ 111 (429)
+++ .++ +.....+|...++++.++.... .......+++.+.
T Consensus 79 ~ILr~a~~El~~~~~~p~~v~InEavelak~f~~~~~~~fiNgVL 123 (130)
T cd00619 79 AILRLAVYELLFLPDVPHPVVINEAIELAKRFGGDDSHKFVNGVL 123 (130)
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHH
T ss_conf 999999999986867634679999999999857786204489999
No 102
>TIGR00095 TIGR00095 putative methyltransferase; InterPro: IPR004398 This is a family of conserved hypothetical proteins, which includes a putative methylase..
Probab=97.63 E-value=0.00037 Score=48.01 Aligned_cols=115 Identities=19% Similarity=0.258 Sum_probs=82.9
Q ss_pred CCCCCCCCEEEECCCCCCHHHHHHHHHHCCCCEEHHHHCCHHHHHHHHHHHHHCC----CCC--CEEEECCC----CCCC
Q ss_conf 2366666258601346882799999986168810055249899999999987502----886--08821554----3445
Q gi|254780634|r 226 LTAITNSSQILDFCAGGGGKTLALSMLLNNKGQIHAWDNNKSRMAPIVARIKRAG----IHN--VQLHSSWE----SLRN 295 (429)
Q Consensus 226 ~l~~~~g~~vLD~CAapGGKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g----~~~--v~~~~~~~----~~~~ 295 (429)
+-.--.|.++||+|||-|+=.+ =+|-.+-..++.+|.+.+=...+++|++-++ ..+ ..+..++. ....
T Consensus 50 ~~~~i~~~~~LD~FAGsG~LG~--EALSRgA~~~~f~E~d~~~~~~l~~N~~~L~nrlk~~~~~~~~~~~~~~~~~~~~~ 127 (210)
T TIGR00095 50 LRPEIVGAHFLDLFAGSGSLGL--EALSRGAKSAVFVEQDKKVAQTLKENLSTLKNRLKLSGEQATVLNDAERALLFLAK 127 (210)
T ss_pred HHHHHCCCEEEEEECCCHHHHH--HHHHHCCCEEEEEECCHHHHHHHHHHHHHHHHHHCCCCCEEEEHHHHHHHHHHHHC
T ss_conf 9876368727885406446537--66401416237873686799999999999888715853000000025666577651
Q ss_pred CCC-CCCEEEECCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEE
Q ss_conf 723-2467896275445044444223667249678999999878999999996089838999
Q gi|254780634|r 296 LQE-HFTTVLVDAPCSGTGTWRRRPDIKWRLSQKNLIERTEEQKKILEESAQFVRPEGYLVY 356 (429)
Q Consensus 296 ~~~-~fd~vl~DaPCSg~G~~rr~Pe~~w~~~~~~~~~~~~lQ~~iL~~a~~~lk~gG~lvY 356 (429)
-.. .||.|++|+|=. .+..|+..+-.+=.+-|++-.++|+|+|.+|=
T Consensus 128 ~~ts~~d~iylDPPf~--------------~~~ad~~~~l~l~~~alerl~~~L~~~~~i~v 175 (210)
T TIGR00095 128 KQTSPFDIIYLDPPFN--------------TGLADLEAILELLGEALERLNKWLNPKGLIVV 175 (210)
T ss_pred CCCCCEEEEEECCCCC--------------CCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEE
T ss_conf 7996114787148888--------------76103799999999999987310487857998
No 103
>TIGR02072 BioC biotin biosynthesis protein BioC; InterPro: IPR011814 This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulphur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.; GO: 0009102 biotin biosynthetic process.
Probab=97.57 E-value=0.00019 Score=50.03 Aligned_cols=135 Identities=19% Similarity=0.265 Sum_probs=90.7
Q ss_pred EECCCCCCCCCCCCC-----CCCCEEEECCCCCCHHHHHHHHHHCCCCEEHHHHCCHHHHHHHHHHHH----HCCCCCCE
Q ss_conf 841556542112366-----666258601346882799999986168810055249899999999987----50288608
Q gi|254780634|r 215 IQDEGSQIVSNLTAI-----TNSSQILDFCAGGGGKTLALSMLLNNKGQIHAWDNNKSRMAPIVARIK----RAGIHNVQ 285 (429)
Q Consensus 215 VQD~aSql~~~~l~~-----~~g~~vLD~CAapGGKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~----r~g~~~v~ 285 (429)
||....--.+.+|.- ....+|||+.||+|==|-++.+... ...++|+|+++..+...++... ...+.++.
T Consensus 15 ~Qr~~~~~Ll~~L~~~~~~~~~~~~vLd~GcGTG~~t~~l~~~~~-~~~~~a~D~~~~ml~~a~~~~~~GWW~~~~~~~~ 93 (272)
T TIGR02072 15 IQREMAKRLLALLKEKRPSHFEPASVLDIGCGTGYLTRALLKRFP-QAELIALDISEEMLAQAKEKLSEGWWQKNLKAVQ 93 (272)
T ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCHHHHHHHHHHCC-CCEEHHHHCCHHHHHHHHHHCCCCCCCCCCHHHH
T ss_conf 999999999998874076544554356512685489999998688-0012333325678999997446788657604566
Q ss_pred EEECCCCCCC-CCCC--CCEEEECCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCC
Q ss_conf 8215543445-7232--467896275445044444223667249678999999878999999996089838999775888
Q gi|254780634|r 286 LHSSWESLRN-LQEH--FTTVLVDAPCSGTGTWRRRPDIKWRLSQKNLIERTEEQKKILEESAQFVRPEGYLVYITCSIL 362 (429)
Q Consensus 286 ~~~~~~~~~~-~~~~--fd~vl~DaPCSg~G~~rr~Pe~~w~~~~~~~~~~~~lQ~~iL~~a~~~lk~gG~lvYsTCS~~ 362 (429)
....|...-+ .... ||.|. |.+. +-|-..+. +.|.+..+.|||||.|+.|| +
T Consensus 94 f~~gD~E~l~~~~~~~~~DLI~-----Sn~a-------~QW~~~~~----------~~l~~l~~~lk~gG~l~FSt---f 148 (272)
T TIGR02072 94 FICGDIEKLPLEDSSFKFDLIV-----SNLA-------LQWCDDLS----------QALSELARVLKPGGLLAFST---F 148 (272)
T ss_pred HHHHHHHHCCCCCCCCEEEHHH-----HHHH-------HHHCCCHH----------HHHHHHHHHCCCCCEEEEEE---C
T ss_conf 6663777178876630341275-----6358-------87104788----------99999997528796899861---3
Q ss_pred HHHCHHHHHHHHH
Q ss_conf 2429998999998
Q gi|254780634|r 363 PEENIQQINYFLS 375 (429)
Q Consensus 363 ~~Ene~vv~~fL~ 375 (429)
-.+|=.-+...-.
T Consensus 149 ~~~~l~El~~~~~ 161 (272)
T TIGR02072 149 GPGTLKELRQSFG 161 (272)
T ss_pred CCHHHHHHHHHHH
T ss_conf 5413499999999
No 104
>pfam02390 Methyltransf_4 Putative methyltransferase. This is a family of putative methyltransferases. The aligned region contains the GXGXG S-AdoMet binding site suggesting a putative methyltransferase activity.
Probab=97.56 E-value=0.00083 Score=45.61 Aligned_cols=139 Identities=17% Similarity=0.207 Sum_probs=99.8
Q ss_pred CCCEEEECCCCCCHHHHHHHHHHCCCCEEHHHHCCHHHHHHHHHHHHHC-CCCCCEEEECCCC--CCC--CCCCCCEEEE
Q ss_conf 6625860134688279999998616881005524989999999998750-2886088215543--445--7232467896
Q gi|254780634|r 231 NSSQILDFCAGGGGKTLALSMLLNNKGQIHAWDNNKSRMAPIVARIKRA-GIHNVQLHSSWES--LRN--LQEHFTTVLV 305 (429)
Q Consensus 231 ~g~~vLD~CAapGGKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~-g~~~v~~~~~~~~--~~~--~~~~fd~vl~ 305 (429)
++-.+||.++|-|+-++.+|..-.+ -..+++|+..+++..+.+++.+. ++.|+.+...++. +.. ..+.+|.|.+
T Consensus 20 ~~pi~lEIG~G~G~~l~~~A~~~p~-~n~iGiEi~~~~v~~~~~k~~~~~~l~Ni~~~~~da~~~l~~~~~~~~l~~i~i 98 (199)
T pfam02390 20 EQPLFLEIGCGMGDFLVAMAKKNPD-KLFIGIEIRVPGVDKALKKIIALRGLQNLRILCGDAMKLLPNLFPDGSLQKIFI 98 (199)
T ss_pred CCCEEEEECCCCCHHHHHHHHHCCC-CCEEEEEECHHHHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHCCCCCEEEEEE
T ss_conf 9944999736888999999997899-878999950599999999999845777378760479999997579886427999
Q ss_pred CCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHCHHHHHHHHHHCCCCEEEEC
Q ss_conf 27544504444422366724967899999987899999999608983899977588824299989999985799799414
Q gi|254780634|r 306 DAPCSGTGTWRRRPDIKWRLSQKNLIERTEEQKKILEESAQFVRPEGYLVYITCSILPEENIQQINYFLSKNPHFSIDSI 385 (429)
Q Consensus 306 DaPCSg~G~~rr~Pe~~w~~~~~~~~~~~~lQ~~iL~~a~~~lk~gG~lvYsTCS~~~~Ene~vv~~fL~~~~~~~~~~~ 385 (429)
==|.- |-|....|+|+ +|.+.|+...+.|++||.+.-+|=.-.-. +.+.+.|.+..+.|+.+..
T Consensus 99 ~FPDP----WpKkrH~KRRl----------i~~~fl~~~~~~Lk~gG~l~~~TD~~~y~--~~~~e~~~~~~~~~~~~~~ 162 (199)
T pfam02390 99 NFPDP----WPKKRHHKRRL----------LQPEFLKEYARVLKPGGVLHLATDVEEYF--EWMLEHLSENHPLFERIHE 162 (199)
T ss_pred ECCCC----CCCCCCCCCCC----------CCHHHHHHHHHHCCCCCEEEEEECCHHHH--HHHHHHHHHCCHHHEECCC
T ss_conf 67999----87644244000----------79999999999638898999982899999--9999999965613411357
Q ss_pred C
Q ss_conf 3
Q gi|254780634|r 386 I 386 (429)
Q Consensus 386 ~ 386 (429)
.
T Consensus 163 ~ 163 (199)
T pfam02390 163 S 163 (199)
T ss_pred C
T ss_conf 7
No 105
>KOG1271 consensus
Probab=97.50 E-value=0.00039 Score=47.81 Aligned_cols=119 Identities=20% Similarity=0.298 Sum_probs=87.7
Q ss_pred EEEECCCCCCHHHHHHHHHHCCCCEEHHHHCCHHHHHHHHHHHHHCCCCC-CEEEECCCCCC-CCCCCCCEEE----ECC
Q ss_conf 58601346882799999986168810055249899999999987502886-08821554344-5723246789----627
Q gi|254780634|r 234 QILDFCAGGGGKTLALSMLLNNKGQIHAWDNNKSRMAPIVARIKRAGIHN-VQLHSSWESLR-NLQEHFTTVL----VDA 307 (429)
Q Consensus 234 ~vLD~CAapGGKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~-v~~~~~~~~~~-~~~~~fd~vl----~Da 307 (429)
+|||+.+|-|-=-..|++-- =++.++.+|.+++-++..+.-++|-|..| |+....|...+ ...++||.|| +||
T Consensus 70 ~VlDLGtGNG~~L~~L~~eg-f~~~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~DI~~~~~~~~qfdlvlDKGT~DA 148 (227)
T KOG1271 70 RVLDLGTGNGHLLFQLAKEG-FQSKLTGVDYSEKAVELAQNIAERDGFSNEIRFQQLDITDPDFLSGQFDLVLDKGTLDA 148 (227)
T ss_pred CEEECCCCCHHHHHHHHHHC-CCCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCEEEEEECCCEEE
T ss_conf 11661579618899988713-88886453157889999987887527885316887322577555543238960574122
Q ss_pred CC-CCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHCHHHHHH
Q ss_conf 54-450444442236672496789999998789999999960898389997758882429998999
Q gi|254780634|r 308 PC-SGTGTWRRRPDIKWRLSQKNLIERTEEQKKILEESAQFVRPEGYLVYITCSILPEENIQQINY 372 (429)
Q Consensus 308 PC-Sg~G~~rr~Pe~~w~~~~~~~~~~~~lQ~~iL~~a~~~lk~gG~lvYsTCS~~~~Ene~vv~~ 372 (429)
-. ||.|.-.|. .--+...-++|+|||+.|-..|-.+..|=.+.++.
T Consensus 149 isLs~d~~~~r~-------------------~~Y~d~v~~ll~~~gifvItSCN~T~dELv~~f~~ 195 (227)
T KOG1271 149 ISLSPDGPVGRL-------------------VVYLDSVEKLLSPGGIFVITSCNFTKDELVEEFEN 195 (227)
T ss_pred EECCCCCCCCCE-------------------EEEHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHC
T ss_conf 550777766543-------------------44355686303889679998557658999999725
No 106
>KOG2187 consensus
Probab=97.48 E-value=0.00032 Score=48.40 Aligned_cols=127 Identities=20% Similarity=0.298 Sum_probs=86.9
Q ss_pred ECCCCCC------CCCCCCCCCCCEEEECCCCCCHHHHHHHHHHCCCCEEHHHHCCHHHHHHHHHHHHHCCCCCCEEEEC
Q ss_conf 4155654------2112366666258601346882799999986168810055249899999999987502886088215
Q gi|254780634|r 216 QDEGSQI------VSNLTAITNSSQILDFCAGGGGKTLALSMLLNNKGQIHAWDNNKSRMAPIVARIKRAGIHNVQLHSS 289 (429)
Q Consensus 216 QD~aSql------~~~~l~~~~g~~vLD~CAapGGKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~ 289 (429)
|-=.|++ +..+++..++..++|+|||-|.=.+.+|.. .+.|+-+++++.-+.-.+.|+.+.|++|.+.+.+
T Consensus 362 Q~Nt~~aevLys~i~e~~~l~~~k~llDv~CGTG~iglala~~---~~~ViGvEi~~~aV~dA~~nA~~NgisNa~Fi~g 438 (534)
T KOG2187 362 QTNTSAAEVLYSTIGEWAGLPADKTLLDVCCGTGTIGLALARG---VKRVIGVEISPDAVEDAEKNAQINGISNATFIVG 438 (534)
T ss_pred CCCCHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCEEHHHHCC---CCCEEEEECCHHHCCHHHHCCHHCCCCCCEEEEC
T ss_conf 1470888999999999708998847998630688400001026---6612102338454443554001158654024306
Q ss_pred -CCCCCC--CC---CCCC-EEEECCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCC
Q ss_conf -543445--72---3246-7896275445044444223667249678999999878999999996089838999775888
Q gi|254780634|r 290 -WESLRN--LQ---EHFT-TVLVDAPCSGTGTWRRRPDIKWRLSQKNLIERTEEQKKILEESAQFVRPEGYLVYITCSIL 362 (429)
Q Consensus 290 -~~~~~~--~~---~~fd-~vl~DaPCSg~G~~rr~Pe~~w~~~~~~~~~~~~lQ~~iL~~a~~~lk~gG~lvYsTCS~~ 362 (429)
+..... +. +.-+ .+++|.|=+|.-. .-+ .+....+.=-++||.+|.+.
T Consensus 439 qaE~~~~sl~~~~~~~~~~v~iiDPpR~Glh~-------------~~i------------k~l~~~~~~~rlvyvSCn~~ 493 (534)
T KOG2187 439 QAEDLFPSLLTPCCDSETLVAIIDPPRKGLHM-------------KVI------------KALRAYKNPRRLVYVSCNPH 493 (534)
T ss_pred CHHHCCCHHCCCCCCCCCEEEEECCCCCCCCH-------------HHH------------HHHHHCCCCCCEEEEECCHH
T ss_conf 42001501205678887568997888676109-------------999------------99985347550589971667
Q ss_pred HHHCHHHHH
Q ss_conf 242999899
Q gi|254780634|r 363 PEENIQQIN 371 (429)
Q Consensus 363 ~~Ene~vv~ 371 (429)
-+ --+++.
T Consensus 494 t~-ar~v~~ 501 (534)
T KOG2187 494 TA-ARNVID 501 (534)
T ss_pred HH-HHHHHH
T ss_conf 75-303787
No 107
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=97.46 E-value=0.00088 Score=45.43 Aligned_cols=134 Identities=18% Similarity=0.180 Sum_probs=96.0
Q ss_pred CEEEECCCCCCHHHHHHHHHHCCCCEEHHHHCCHHHHHHHHHHHHHCCCCCCEEEECCCCC--C--CCCCCCCEEEECCC
Q ss_conf 2586013468827999999861688100552498999999999875028860882155434--4--57232467896275
Q gi|254780634|r 233 SQILDFCAGGGGKTLALSMLLNNKGQIHAWDNNKSRMAPIVARIKRAGIHNVQLHSSWESL--R--NLQEHFTTVLVDAP 308 (429)
Q Consensus 233 ~~vLD~CAapGGKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~~~~~--~--~~~~~fd~vl~DaP 308 (429)
-.+|+.|+|-|.=++++|..-... -.+++|++...+..+...+.++|+.|+.+.+.|+.. . ...+..|+|.+-=|
T Consensus 50 pi~lEIGfG~G~~l~~~A~~nP~~-nfiGiEi~~~~v~~~l~k~~~~~l~Nlri~~~DA~~~l~~~~~~~sl~~I~i~FP 128 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKNPEK-NFLGIEIRVPGVAKALKKIKELGLKNLRLLCGDAVEVLDYLIPDGSLDKIYINFP 128 (227)
T ss_pred CEEEEECCCCCHHHHHHHHHCCCC-CEEEEEEEHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHCCCCCCEEEEEEECC
T ss_conf 669996888987899999878987-7899997348999999999982998469980779999973589885657999799
Q ss_pred CCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHCHHHHHHHHHHCCCCEEE
Q ss_conf 445044444223667249678999999878999999996089838999775888242999899999857997994
Q gi|254780634|r 309 CSGTGTWRRRPDIKWRLSQKNLIERTEEQKKILEESAQFVRPEGYLVYITCSILPEENIQQINYFLSKNPHFSID 383 (429)
Q Consensus 309 CSg~G~~rr~Pe~~w~~~~~~~~~~~~lQ~~iL~~a~~~lk~gG~lvYsTCS~~~~Ene~vv~~fL~~~~~~~~~ 383 (429)
+ |.-|=|-... --+|...|...++.|+|||.+-.+|=.=.-.|- .+..++...++....
T Consensus 129 D---------PWpKkRH~KR-----Rl~~~~fl~~~a~~Lk~gG~l~~aTD~~~y~e~--~~~~~~~~~~~~~~~ 187 (227)
T COG0220 129 D---------PWPKKRHHKR-----RLTQPEFLKLYARKLKPGGVLHFATDNEEYFEW--MMLEVLEHPPFLKFE 187 (227)
T ss_pred C---------CCCCCCCCCC-----CCCCHHHHHHHHHHCCCCCEEEEEECCHHHHHH--HHHHHHHCCHHHHCC
T ss_conf 9---------9987664332-----147889999999972689789997267999999--999987343233145
No 108
>PRK00107 gidB glucose-inhibited division protein B; Reviewed
Probab=97.41 E-value=0.0013 Score=44.35 Aligned_cols=129 Identities=18% Similarity=0.214 Sum_probs=85.5
Q ss_pred CCCCCCCCEEEECCCCCCHHHHHHHHHHCCCCEEHHHHCCHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCCEEEE
Q ss_conf 23666662586013468827999999861688100552498999999999875028860882155434457232467896
Q gi|254780634|r 226 LTAITNSSQILDFCAGGGGKTLALSMLLNNKGQIHAWDNNKSRMAPIVARIKRAGIHNVQLHSSWESLRNLQEHFTTVLV 305 (429)
Q Consensus 226 ~l~~~~g~~vLD~CAapGGKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~~~~~~~~~~~fd~vl~ 305 (429)
.+...++.+|+|+.+|+|==-+-+|-... ...++-+|...+|..-|++-..++|+.||++............+||.|..
T Consensus 64 ~~~~~~~~~vlDiGSGaGfPGiplAI~~p-~~~~~Lves~~KK~~FL~~~~~~L~L~nv~v~~~R~E~~~~~~~fD~its 142 (216)
T PRK00107 64 YLQGEKPIRVLDVGSGAGFPGIPLAIARP-DLQVTLVDSLGKKIAFLRQVAAELGLKNVTVVHGRAEEFGQEEKFDVVTS 142 (216)
T ss_pred HCCCCCCCEEEECCCCCCCHHHHHHHHCC-CCCEEEECHHHHHHHHHHHHHHHCCCCCEEEEEHHHHCCCCCCCCCEEEE
T ss_conf 33766587799707999942678999778-77299973876999999999997699987998635440465678668986
Q ss_pred CCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHCHHHHHHHHHHCCCCEEE
Q ss_conf 275445044444223667249678999999878999999996089838999775888242999899999857997994
Q gi|254780634|r 306 DAPCSGTGTWRRRPDIKWRLSQKNLIERTEEQKKILEESAQFVRPEGYLVYITCSILPEENIQQINYFLSKNPHFSID 383 (429)
Q Consensus 306 DaPCSg~G~~rr~Pe~~w~~~~~~~~~~~~lQ~~iL~~a~~~lk~gG~lvYsTCS~~~~Ene~vv~~fL~~~~~~~~~ 383 (429)
=| ++.+. .+++-+.+++++||+++.--=. ..+|--+-.+.-++.. ++++.
T Consensus 143 RA-------------------------va~l~-~l~~~~~~~l~~~g~~i~~KG~-~~~~Ei~~a~~~~~~~-~~~~~ 192 (216)
T PRK00107 143 RA-------------------------VASLS-DLVELCLPLLKPGGRFLALKGQ-DPEEEIAELPKAIKKL-GGKVE 192 (216)
T ss_pred EH-------------------------HHCHH-HHHHHHHHHCCCCCEEEEECCC-CHHHHHHHHHHHHHHC-CCEEE
T ss_conf 05-------------------------40699-9999999754889799998799-9599999989899983-97599
No 109
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase; InterPro: IPR011869 This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of this entry belong to the Proteobacteria. ; GO: 0009021 tRNA (uracil-5-)-methyltransferase activity, 0008033 tRNA processing.
Probab=97.41 E-value=0.00079 Score=45.76 Aligned_cols=123 Identities=23% Similarity=0.399 Sum_probs=100.0
Q ss_pred CCCCCCCCCCCEEEECCCCCCHHHHHHHHHHCCCCEEHHHHCCHHHHHHHHHHHHHCCCCCCEEE-----------ECCC
Q ss_conf 21123666662586013468827999999861688100552498999999999875028860882-----------1554
Q gi|254780634|r 223 VSNLTAITNSSQILDFCAGGGGKTLALSMLLNNKGQIHAWDNNKSRMAPIVARIKRAGIHNVQLH-----------SSWE 291 (429)
Q Consensus 223 ~~~~l~~~~g~~vLD~CAapGGKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~-----------~~~~ 291 (429)
++..+.-..|+=.|.+=||=|-=|+.||.... +|.|.|+++.=+.....|++.-++.||++. ....
T Consensus 195 A~~~~~~~~g~DLLELYCGNGNFsLaLA~~f~---rVLATEiaK~SV~aAq~Ni~~N~idNv~i~RlSAEEft~A~~~~R 271 (361)
T TIGR02143 195 ALEVTQNSKGMDLLELYCGNGNFSLALAQNFE---RVLATEIAKPSVNAAQYNIAANKIDNVQIIRLSAEEFTEAMNGVR 271 (361)
T ss_pred HHHHHCCCCCCCCCEEECCCCCCHHHHHHHHH---HHHHHHCCCCCHHHHHHHHHCCCCCCEEHHHHHHHHHHHHHCCCC
T ss_conf 99983588887201000267531044565333---455430240247999999871798831010232799999860377
Q ss_pred CCCCCC--C------CCCEEEECCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCH
Q ss_conf 344572--3------24678962754450444442236672496789999998789999999960898389997758882
Q gi|254780634|r 292 SLRNLQ--E------HFTTVLVDAPCSGTGTWRRRPDIKWRLSQKNLIERTEEQKKILEESAQFVRPEGYLVYITCSILP 363 (429)
Q Consensus 292 ~~~~~~--~------~fd~vl~DaPCSg~G~~rr~Pe~~w~~~~~~~~~~~~lQ~~iL~~a~~~lk~gG~lvYsTCS~~~ 363 (429)
...+++ | .|..|+||+|=||+ .+ ...++|+.-+.++|.-| ||
T Consensus 272 ~F~RL~d~gIdL~~Y~f~tiFVDPPRaGl-------------D~---------------~t~~Lv~~y~rIlYISC--NP 321 (361)
T TIGR02143 272 EFRRLKDGGIDLKSYNFNTIFVDPPRAGL-------------DP---------------DTVKLVQKYERILYISC--NP 321 (361)
T ss_pred CCCCCCCCCCCCCCCCCCEEEECCCCCCC-------------CH---------------HHHHHHHHCCCEEEEEC--CH
T ss_conf 65465668863342025602677988888-------------98---------------99999962598799846--96
Q ss_pred HHCHHHHHHHHHHCC
Q ss_conf 429998999998579
Q gi|254780634|r 364 EENIQQINYFLSKNP 378 (429)
Q Consensus 364 ~Ene~vv~~fL~~~~ 378 (429)
+==.++++..-++|.
T Consensus 322 ~TL~~NL~~L~~TH~ 336 (361)
T TIGR02143 322 ETLKENLEQLSETHR 336 (361)
T ss_pred HHHHHHHHHHHHCCE
T ss_conf 899999998860653
No 110
>KOG1099 consensus
Probab=97.38 E-value=0.00056 Score=46.76 Aligned_cols=115 Identities=24% Similarity=0.289 Sum_probs=68.5
Q ss_pred CCEEEECCCCCCHHHHHHHHHHCC----CC----EEHHHHCCHHHHHHHHHHHHHCCCCCCEEEECCCC--------CCC
Q ss_conf 625860134688279999998616----88----10055249899999999987502886088215543--------445
Q gi|254780634|r 232 SSQILDFCAGGGGKTLALSMLLNN----KG----QIHAWDNNKSRMAPIVARIKRAGIHNVQLHSSWES--------LRN 295 (429)
Q Consensus 232 g~~vLD~CAapGGKt~~la~~~~~----~g----~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~~~~--------~~~ 295 (429)
-.+|.|+|||||.=+-.++..+.. .+ .|+|+|+.+- +-+.-|.....|.+ +.-
T Consensus 42 v~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~M-----------aPI~GV~qlq~DIT~~stae~Ii~h 110 (294)
T KOG1099 42 VKRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPM-----------APIEGVIQLQGDITSASTAEAIIEH 110 (294)
T ss_pred HHHHHHHHCCCCCHHHHHHHHHHCCCCCCCHHHCCEEEEECCCC-----------CCCCCEEEEECCCCCHHHHHHHHHH
T ss_conf 36774353089839999999973248874201162799855657-----------7667627850455777689999998
Q ss_pred C-CCCCCEEEECCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH----HHCCCCEEEEEECCCCHHHCHHHH
Q ss_conf 7-23246789627544504444422366724967899999987899999999----608983899977588824299989
Q gi|254780634|r 296 L-QEHFTTVLVDAPCSGTGTWRRRPDIKWRLSQKNLIERTEEQKKILEESAQ----FVRPEGYLVYITCSILPEENIQQI 370 (429)
Q Consensus 296 ~-~~~fd~vl~DaPCSg~G~~rr~Pe~~w~~~~~~~~~~~~lQ~~iL~~a~~----~lk~gG~lvYsTCS~~~~Ene~vv 370 (429)
+ .++.|.|.+|--=--||. .+++++. |.+||.+|.. .|||||..|= -|++-++...+
T Consensus 111 fggekAdlVvcDGAPDvTGl-------------Hd~DEy~--Q~qLllaAl~i~t~Vlk~Gg~FVa---KifRg~~tslL 172 (294)
T KOG1099 111 FGGEKADLVVCDGAPDVTGL-------------HDLDEYV--QAQLLLAALNIATCVLKPGGSFVA---KIFRGRDTSLL 172 (294)
T ss_pred HCCCCCCEEEECCCCCCCCC-------------CCHHHHH--HHHHHHHHHHHHHHEECCCCEEEH---HHHCCCCHHHH
T ss_conf 57997667884799874453-------------2088999--999999998777420147875255---46426750789
Q ss_pred HHHHH
Q ss_conf 99998
Q gi|254780634|r 371 NYFLS 375 (429)
Q Consensus 371 ~~fL~ 375 (429)
-.=|.
T Consensus 173 ysql~ 177 (294)
T KOG1099 173 YSQLR 177 (294)
T ss_pred HHHHH
T ss_conf 99999
No 111
>KOG1253 consensus
Probab=97.35 E-value=0.00059 Score=46.64 Aligned_cols=110 Identities=23% Similarity=0.289 Sum_probs=82.3
Q ss_pred CCCCCCCCCEEEECCCCCCHHHHHHHHHHCCCCEEHHHHCCHHHHHHHHHHHHHCCCCCCE-EEECCC-----CCCCCCC
Q ss_conf 1236666625860134688279999998616881005524989999999998750288608-821554-----3445723
Q gi|254780634|r 225 NLTAITNSSQILDFCAGGGGKTLALSMLLNNKGQIHAWDNNKSRMAPIVARIKRAGIHNVQ-LHSSWE-----SLRNLQE 298 (429)
Q Consensus 225 ~~l~~~~g~~vLD~CAapGGKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~-~~~~~~-----~~~~~~~ 298 (429)
.+-.-.++-+|||+-+|-|--++.-|....+-+.|+|+|.++.-+..+++|++..++.++. ....|+ ..+....
T Consensus 103 ~~~~~~~~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV~~i~~Nv~~N~v~~ive~~~~DA~~lM~~~~~~~~ 182 (525)
T KOG1253 103 LLKREEKSLRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAVTSIQRNVELNGVEDIVEPHHSDANVLMYEHPMVAK 182 (525)
T ss_pred HHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCCHHHHHHHHHHHHHCCCHHHCCCCCCHHHHHHHHCCCCCC
T ss_conf 13432675008987645517888998870424531036787778899986655067322112441027789875645212
Q ss_pred CCCEEEECCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCC
Q ss_conf 246789627544504444422366724967899999987899999999608983899977588
Q gi|254780634|r 299 HFTTVLVDAPCSGTGTWRRRPDIKWRLSQKNLIERTEEQKKILEESAQFVRPEGYLVYITCSI 361 (429)
Q Consensus 299 ~fd~vl~DaPCSg~G~~rr~Pe~~w~~~~~~~~~~~~lQ~~iL~~a~~~lk~gG~lvYsTCS~ 361 (429)
.||.|=+|.==|.+ .-|+.|.+.++.|| |++.|||=
T Consensus 183 ~FDvIDLDPyGs~s--------------------------~FLDsAvqav~~gG-LL~vT~TD 218 (525)
T KOG1253 183 FFDVIDLDPYGSPS--------------------------PFLDSAVQAVRDGG-LLCVTCTD 218 (525)
T ss_pred CCCEEECCCCCCCC--------------------------HHHHHHHHHHHCCC-EEEEEECC
T ss_conf 46667237889962--------------------------77999999864087-79998233
No 112
>TIGR00406 prmA ribosomal protein L11 methyltransferase; InterPro: IPR004498 Ribosomal protein L11 methyltransferase (2.1.1 from EC) is required for the methylation of ribosomal protein L11. It forms a bifunctional operon in Escherichia coli with panF (pantothenate transport).; GO: 0008276 protein methyltransferase activity, 0006479 protein amino acid methylation.
Probab=97.33 E-value=0.0005 Score=47.09 Aligned_cols=146 Identities=13% Similarity=0.203 Sum_probs=111.5
Q ss_pred HHCCCEEEEECCCCCCCCCCCC--CCCC--CEEEECCCCCCHHHHHHHHHHCCCCEEHHHHCCHHHHHHHHHHHHHCCCC
Q ss_conf 3126548984155654211236--6666--25860134688279999998616881005524989999999998750288
Q gi|254780634|r 207 TFQRGWFEIQDEGSQIVSNLTA--ITNS--SQILDFCAGGGGKTLALSMLLNNKGQIHAWDNNKSRMAPIVARIKRAGIH 282 (429)
Q Consensus 207 ~f~~G~~~VQD~aSql~~~~l~--~~~g--~~vLD~CAapGGKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~ 282 (429)
+|-.|. =++.+|+.++|+ .+++ ..|+|+.||.|-=+ ||..+-+...++|+|+++-=++..+.|+++-+++
T Consensus 172 AFGTGt----H~TT~LCLe~L~~~d~k~kh~~viD~GCGSGIL~--IAa~~LGa~~~~g~D~DP~Ave~~r~N~~lN~v~ 245 (330)
T TIGR00406 172 AFGTGT----HPTTSLCLELLEDLDLKDKHKKVIDVGCGSGILS--IAALKLGAAKVVGIDIDPLAVESARKNAELNQVS 245 (330)
T ss_pred CCCCCC----CHHHHHHHHHHHCCCCCCCCCEEEEECCCHHHHH--HHHHHHHHHHEEEECCCHHHHHHHHHHHHHCCCC
T ss_conf 568897----4578999998740147776654787126717899--9999751231122137728999999768745886
Q ss_pred CCE-EEEC---CCCCCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEE
Q ss_conf 608-8215---543445723246789627544504444422366724967899999987899999999608983899977
Q gi|254780634|r 283 NVQ-LHSS---WESLRNLQEHFTTVLVDAPCSGTGTWRRRPDIKWRLSQKNLIERTEEQKKILEESAQFVRPEGYLVYIT 358 (429)
Q Consensus 283 ~v~-~~~~---~~~~~~~~~~fd~vl~DaPCSg~G~~rr~Pe~~w~~~~~~~~~~~~lQ~~iL~~a~~~lk~gG~lvYsT 358 (429)
... +... ........+++|.|.+- | ++..=++++....+++|++|.++-|=
T Consensus 246 ~~~~~~~~~~vPe~~~~~e~~~DViVAN-----------------------i--LA~vi~~L~p~~~~L~~~~G~lilSG 300 (330)
T TIGR00406 246 DRLQVKLENSVPELEQPIEGKADVIVAN-----------------------I--LAEVIKELYPQFSRLVKPGGHLILSG 300 (330)
T ss_pred HHHHHHHCCCCCCCCCCCCCCCCEEEEC-----------------------C--HHHHHHHHHHHHHHHCCCCCCEEEHH
T ss_conf 4576432057875345322566757880-----------------------0--24578764135513106899657413
Q ss_pred CCCCHHHCHHHHHHHHHHCCCCEEEECCC
Q ss_conf 58882429998999998579979941430
Q gi|254780634|r 359 CSILPEENIQQINYFLSKNPHFSIDSIID 387 (429)
Q Consensus 359 CS~~~~Ene~vv~~fL~~~~~~~~~~~~~ 387 (429)
--++-.+.|...+++. +|.++++..
T Consensus 301 ---Il~~~~~sV~~ay~q~-GF~~~~~~~ 325 (330)
T TIGR00406 301 ---ILETQAQSVCEAYEQA-GFTVVEILK 325 (330)
T ss_pred ---HHHHHHHHHHHHHHCC-CCEEHHHHH
T ss_conf ---4764799999998557-946343464
No 113
>pfam03291 Pox_MCEL mRNA capping enzyme. This family of enzymes are related to pfam03919.
Probab=97.29 E-value=0.0037 Score=41.20 Aligned_cols=121 Identities=14% Similarity=0.200 Sum_probs=70.6
Q ss_pred CCCCCEEEECCCCCCHHHHHHHHHHCCCCEEHHHHCCHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCCEEEECCC
Q ss_conf 66662586013468827999999861688100552498999999999875028860882155434457232467896275
Q gi|254780634|r 229 ITNSSQILDFCAGGGGKTLALSMLLNNKGQIHAWDNNKSRMAPIVARIKRAGIHNVQLHSSWESLRNLQEHFTTVLVDAP 308 (429)
Q Consensus 229 ~~~g~~vLD~CAapGGKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~~~~~~~~~~~fd~vl~DaP 308 (429)
..++.+|||+|+|-||=-.=- .-.+-+.++.+|++..=++..++|-..+...+- .......|...+...-
T Consensus 61 ~~~~~~VLDl~CGkGGDL~Kw--~~~~i~~~vgiDis~~sI~~A~~RY~~~~~~~~--------~~~~~~~f~~~f~~~D 130 (327)
T pfam03291 61 DKPKRKVLDLDCGKGGDLEKY--FKGGISGLIGTDIAEVSIEQAQERYNDLNSRSK--------SKYYKFDFIAEFITGD 130 (327)
T ss_pred CCCCCEEEEECCCCCCCHHHH--HHCCCCEEEEECCCHHHHHHHHHHHHHHHHCCC--------CCCCCCCCCEEEEECC
T ss_conf 688987998368664457889--747986899966899999999999998642114--------4445667500123156
Q ss_pred CCCCHHHHHHHH--HH-----HHCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEC
Q ss_conf 445044444223--66-----7249678999999878999999996089838999775
Q gi|254780634|r 309 CSGTGTWRRRPD--IK-----WRLSQKNLIERTEEQKKILEESAQFVRPEGYLVYITC 359 (429)
Q Consensus 309 CSg~G~~rr~Pe--~~-----w~~~~~~~~~~~~lQ~~iL~~a~~~lk~gG~lvYsTC 359 (429)
|++.-.-..-++ .+ |+..-.-.-+=.+.=+.+|.+++..|+|||+.+=.|=
T Consensus 131 ~~~~~l~~~~~~~~~~FDvVS~QFAiHY~Fese~~a~~~l~Nvs~~Lk~GG~FIGT~~ 188 (327)
T pfam03291 131 CFVSSVREVFEPGQRKFDIVSWQFAIHYSFESEEKARTMLRNLAELLASGGKFIGTTP 188 (327)
T ss_pred CCHHHHHHHCCCCCCCCCEEEHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCEEEEEEC
T ss_conf 2156787753577885037751787898764899999999999986058988999966
No 114
>PRK00050 mraW S-adenosyl-methyltransferase MraW; Provisional
Probab=97.27 E-value=0.00061 Score=46.51 Aligned_cols=87 Identities=23% Similarity=0.204 Sum_probs=66.3
Q ss_pred CCCCCCCCCCCEEEECCCCCCHHHHHHHHHHCCCCEEHHHHCCHHHHHHHHHHHHHCCCCCCEEEECCCC-C---CCCCC
Q ss_conf 2112366666258601346882799999986168810055249899999999987502886088215543-4---45723
Q gi|254780634|r 223 VSNLTAITNSSQILDFCAGGGGKTLALSMLLNNKGQIHAWDNNKSRMAPIVARIKRAGIHNVQLHSSWES-L---RNLQE 298 (429)
Q Consensus 223 ~~~~l~~~~g~~vLD~CAapGGKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~~~~-~---~~~~~ 298 (429)
+...|.+++|..++|+--|.||.|..|.+.....|+|+|.|.++.=+...++++...+- ++.+...... + -...+
T Consensus 15 vl~~L~~~~~g~yvD~T~G~GGHS~~iL~~l~~~~~li~iDrD~~ai~~a~~~l~~~~~-r~~~~~~nF~~l~~~l~~~~ 93 (309)
T PRK00050 15 VVDGLAIKPDGIYVDGTFGRGGHSRAILSQLGPGGRLIAIDRDPQAIAAAKERLDPFGG-RFTIVHGNFSDLAEYLAEVG 93 (309)
T ss_pred HHHHCCCCCCCEEEEECCCCCHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHCCC-CEEEEECCHHHHHHHHHHCC
T ss_conf 99836828999999938898399999997279998899998988999999998652588-28999277988999998638
Q ss_pred CCCEEEECCCCC
Q ss_conf 246789627544
Q gi|254780634|r 299 HFTTVLVDAPCS 310 (429)
Q Consensus 299 ~fd~vl~DaPCS 310 (429)
++|.||+|-=+|
T Consensus 94 ~vdgil~DLGvS 105 (309)
T PRK00050 94 KVDGILLDLGVS 105 (309)
T ss_pred CCCEEEEEEECC
T ss_conf 877899972248
No 115
>KOG1663 consensus
Probab=97.25 E-value=0.0016 Score=43.76 Aligned_cols=119 Identities=19% Similarity=0.245 Sum_probs=90.7
Q ss_pred EECCCCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHCCCCEEHHHHCCHHHHHHHHHHHHHCCCCC-CEEEECC---
Q ss_conf 841556542112366666258601346882799999986168810055249899999999987502886-0882155---
Q gi|254780634|r 215 IQDEGSQIVSNLTAITNSSQILDFCAGGGGKTLALSMLLNNKGQIHAWDNNKSRMAPIVARIKRAGIHN-VQLHSSW--- 290 (429)
Q Consensus 215 VQD~aSql~~~~l~~~~g~~vLD~CAapGGKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~-v~~~~~~--- 290 (429)
|-+.-.|+...++..-...++||+..=-|=-++..|-.....|+|+|+|+++.-.+.-.+-.+++|+.- |.+....
T Consensus 57 v~~d~g~fl~~li~~~~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a~e 136 (237)
T KOG1663 57 VGPDKGQFLQMLIRLLNAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGPALE 136 (237)
T ss_pred CCHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCEEEEEECCHHH
T ss_conf 37688799999999858733899812127899999974599965999961868888759999860633034234252566
Q ss_pred ---CCCCC-CCCCCCEEEECCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEE
Q ss_conf ---43445-723246789627544504444422366724967899999987899999999608983899977
Q gi|254780634|r 291 ---ESLRN-LQEHFTTVLVDAPCSGTGTWRRRPDIKWRLSQKNLIERTEEQKKILEESAQFVRPEGYLVYIT 358 (429)
Q Consensus 291 ---~~~~~-~~~~fd~vl~DaPCSg~G~~rr~Pe~~w~~~~~~~~~~~~lQ~~iL~~a~~~lk~gG~lvYsT 358 (429)
..... ..++||.+++|| |+. .+. ...+++.+++|+||.|+|=.
T Consensus 137 sLd~l~~~~~~~tfDfaFvDa---------------dK~------nY~----~y~e~~l~Llr~GGvi~~DN 183 (237)
T KOG1663 137 SLDELLADGESGTFDFAFVDA---------------DKD------NYS----NYYERLLRLLRVGGVIVVDN 183 (237)
T ss_pred HHHHHHHCCCCCCEEEEEECC---------------CHH------HHH----HHHHHHHHHCCCCCEEEEEC
T ss_conf 699998557998425999736---------------667------789----99999985621353899922
No 116
>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]
Probab=97.25 E-value=0.00093 Score=45.27 Aligned_cols=167 Identities=19% Similarity=0.184 Sum_probs=104.6
Q ss_pred CEEEEECCCCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHCC---CCEEHHHHCCHHHHHHHHHHHHHCCCC-CCEE
Q ss_conf 548984155654211236666625860134688279999998616---881005524989999999998750288-6088
Q gi|254780634|r 211 GWFEIQDEGSQIVSNLTAITNSSQILDFCAGGGGKTLALSMLLNN---KGQIHAWDNNKSRMAPIVARIKRAGIH-NVQL 286 (429)
Q Consensus 211 G~~~VQD~aSql~~~~l~~~~g~~vLD~CAapGGKt~~la~~~~~---~g~i~A~D~~~~Rl~~l~~~~~r~g~~-~v~~ 286 (429)
|.|.-==.-+.+.+.++.|++..+|+|.|||-||=-+..+..++. ...++..|++..-....+-|+-=.|+. ++.+
T Consensus 166 GEfyTP~~v~~liv~~l~~~~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lhgi~~~~~i 245 (489)
T COG0286 166 GEFYTPREVSELIVELLDPEPRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILHGIEGDANI 245 (489)
T ss_pred CCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEECCHHHHHHHHHHHHHHCCCCCCCC
T ss_conf 86058799999999975776565234733540379999999997515550499895668899999961166278742234
Q ss_pred EECCCCCCC------CCCCCCEEEECCCCCCCHHHHHH-HH-HHHHC------CHHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 215543445------72324678962754450444442-23-66724------967899999987899999999608983
Q gi|254780634|r 287 HSSWESLRN------LQEHFTTVLVDAPCSGTGTWRRR-PD-IKWRL------SQKNLIERTEEQKKILEESAQFVRPEG 352 (429)
Q Consensus 287 ~~~~~~~~~------~~~~fd~vl~DaPCSg~G~~rr~-Pe-~~w~~------~~~~~~~~~~lQ~~iL~~a~~~lk~gG 352 (429)
...+-...+ ..+.||.|+.-+|=|+.|-..-. .. -.|+. .+..-.. ..-+.+....++|||
T Consensus 246 ~~~dtl~~~~~~~~~~~~~~D~viaNPPf~~~~w~~~~~~~~~~~~~~~~g~~~~~~~~d-----~afi~h~~~~l~~~g 320 (489)
T COG0286 246 RHGDTLSNPKHDDKDDKGKFDFVIANPPFSGKGWGGDLLESEQDERFFFYGVFPTKNSAD-----LAFLQHILYKLKPGG 320 (489)
T ss_pred CCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCHHH-----HHHHHHHHHHCCCCC
T ss_conf 334423687332346655501686579955444344331002432000257788895278-----999999999718677
Q ss_pred E--EEEEECCCCHHHCHHHHHHHHHHCCCCEE
Q ss_conf 8--99977588824299989999985799799
Q gi|254780634|r 353 Y--LVYITCSILPEENIQQINYFLSKNPHFSI 382 (429)
Q Consensus 353 ~--lvYsTCS~~~~Ene~vv~~fL~~~~~~~~ 382 (429)
+ +|-..=.++..=+|..|...|-....+..
T Consensus 321 ~aaivl~~gvlfr~~~e~~IR~~l~~~~~~~~ 352 (489)
T COG0286 321 RAAIVLPDGVLFRGGAEKDIRKDLLEDNLLEA 352 (489)
T ss_pred CEEEEECCCCCCCCCCHHHHHHHHHHHHHHEE
T ss_conf 05899258866277722579999875031335
No 117
>TIGR00006 TIGR00006 S-adenosyl-methyltransferase MraW; InterPro: IPR002903 This is a family of methyltransferases. Methyltransferases are responsible for the transfer of methyl groups between two molecules.; GO: 0008168 methyltransferase activity.
Probab=97.25 E-value=0.0009 Score=45.38 Aligned_cols=158 Identities=20% Similarity=0.232 Sum_probs=106.0
Q ss_pred CCCCCCCCCCEEEECCCCCCHHHHHHHHHHCCCCEEHHHHCCHHHHHHHHHHHHHCCCCCCEEEECCCC-C-----CC-C
Q ss_conf 112366666258601346882799999986168810055249899999999987502886088215543-4-----45-7
Q gi|254780634|r 224 SNLTAITNSSQILDFCAGGGGKTLALSMLLNNKGQIHAWDNNKSRMAPIVARIKRAGIHNVQLHSSWES-L-----RN-L 296 (429)
Q Consensus 224 ~~~l~~~~g~~vLD~CAapGGKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~~~~-~-----~~-~ 296 (429)
++-|+++|+...+|+-.|.||.|-+|.+.....|+++++|.++.=+...++.+.-..-..+.+..+... . .. .
T Consensus 20 v~~L~ik~~G~YiD~T~G~GGHS~~iL~ql~~~g~L~~iD~D~~ai~~A~~~l~~~~~~~~~~~~~~F~~~~~~~~~~~~ 99 (323)
T TIGR00006 20 VEGLNIKPDGIYIDCTLGRGGHSKAILEQLSEKGRLIGIDRDKQAIAFAKELLKDFEGRRVVLIHDNFANFFEYLKELDL 99 (323)
T ss_pred HHCCCCCCCCEEEEECCCCHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHCCCC
T ss_conf 72765488873654025851789999852399950788747989999999985321067578850760342003211588
Q ss_pred CCCCCEEEECCCCCCC--------------HH-----------------HH-----------------------------
Q ss_conf 2324678962754450--------------44-----------------44-----------------------------
Q gi|254780634|r 297 QEHFTTVLVDAPCSGT--------------GT-----------------WR----------------------------- 316 (429)
Q Consensus 297 ~~~fd~vl~DaPCSg~--------------G~-----------------~r----------------------------- 316 (429)
-.+||.||+|==-|.- |. +.
T Consensus 100 ~~k~dGIL~DLGVSS~QLD~~~RGFSF~~d~PLDMRMD~s~~~~sA~e~~~~~~~~dL~~il~~yGEe~~~KrIA~~I~e 179 (323)
T TIGR00006 100 VTKIDGILVDLGVSSPQLDDPERGFSFKHDGPLDMRMDQSSQKLSAAEVLNTYSEEDLERILKKYGEEKFSKRIARAIVE 179 (323)
T ss_pred EEEEEEEEECCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCHHHHHHHHHHHCCCCCCCHHHHHHHH
T ss_conf 15774588615776031187888826467879665456555657789998400089999999872520243067899999
Q ss_pred -----------------------------HHHHHHHHCCHHH--H-HHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHH
Q ss_conf -----------------------------4223667249678--9-9999987899999999608983899977588824
Q gi|254780634|r 317 -----------------------------RRPDIKWRLSQKN--L-IERTEEQKKILEESAQFVRPEGYLVYITCSILPE 364 (429)
Q Consensus 317 -----------------------------r~Pe~~w~~~~~~--~-~~~~~lQ~~iL~~a~~~lk~gG~lvYsTCS~~~~ 364 (429)
+||-.|- .+.=. | +||..| .+.|..+..+|+|||+|. .=|+.--
T Consensus 180 ~~~~~p~~tT~~Lae~i~~a~p~f~K~k~~hPAtrv-FQAiRI~vNdEL~~L-e~~L~~~~~~L~~~Grl~--vIsFHSL 255 (323)
T TIGR00006 180 ARKKKPIQTTKELAELISKAVPGFSKHKSIHPATRV-FQAIRIYVNDELEEL-EEALQQAPNLLKPGGRLS--VISFHSL 255 (323)
T ss_pred HHHCCCCCCHHHHHHHHHHHCCCCCCCCCCCCHHHH-HHHHHHHHHHHHHHH-HHHHHHHHHHHCCCCEEE--EEEHHHH
T ss_conf 984278875778999999744761004788851255-535677888789999-999999998417897189--8740005
Q ss_pred HCHHHHHHHHHHCCCCEEEECC
Q ss_conf 2999899999857997994143
Q gi|254780634|r 365 ENIQQINYFLSKNPHFSIDSII 386 (429)
Q Consensus 365 Ene~vv~~fL~~~~~~~~~~~~ 386 (429)
|. ..|+.|.++...+.-+|..
T Consensus 256 ED-riVK~~f~~~s~~~~~P~~ 276 (323)
T TIGR00006 256 ED-RIVKNFFKELSKFPQVPPG 276 (323)
T ss_pred HH-HHHHHHHHHHCCCCCCCCC
T ss_conf 67-9999999861476678776
No 118
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase; InterPro: IPR010251 Chlorophyll and bacteriochlorophyll are essential photosynthetic pigments involved in oxygenic and non-oxygenic photosythesis respectively. They are both synthesised from protoporphyrin IX in complex pathways which share many common steps. The second committed step in both pathways is the methylation of magnesium protoporphyrin IX, catalysed by magnesium protoporphyrin O-methyltransferase with S-adenosyl methionine (SAM) as the methyl donor , , .Sequence alignments suggest that the protein contains the characteristic seven-stranded beta-sheet fold found in other SAM-dependent methyltransferases. This entry represents magnesium protoporphyrin O-methyltransferase from cyanobacteria and plants, where it is known as ChlM, and from other photosynthetic bacteria, where it is known as BchM.; GO: 0046406 magnesium protoporphyrin IX methyltransferase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process.
Probab=97.21 E-value=0.00075 Score=45.89 Aligned_cols=106 Identities=17% Similarity=0.216 Sum_probs=75.3
Q ss_pred CCCCCEEEECCCCCCHHHHHHHHHHCCCCEEHHHHCCHHHHHHHHHHHHHCCC-CC-CEEEECCCCCCCCC-CCCCEEEE
Q ss_conf 66662586013468827999999861688100552498999999999875028-86-08821554344572-32467896
Q gi|254780634|r 229 ITNSSQILDFCAGGGGKTLALSMLLNNKGQIHAWDNNKSRMAPIVARIKRAGI-HN-VQLHSSWESLRNLQ-EHFTTVLV 305 (429)
Q Consensus 229 ~~~g~~vLD~CAapGGKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~-~~-v~~~~~~~~~~~~~-~~fd~vl~ 305 (429)
+-.|.+|||+.||.|==|..||.. ...|.|+|++++=++..+++.+..+. .| +++..+|... .. |+||.|++
T Consensus 52 ~l~G~~vlDAGCGtGllsi~LAk~---GA~V~A~DIS~~mv~~A~~r~~~~~~~~nl~~FeV~Dl~s--~~~G~fD~VV~ 126 (224)
T TIGR02021 52 SLKGKKVLDAGCGTGLLSIELAKR---GAIVKAVDISEQMVELARERAEKEDEAGNLVEFEVNDLES--LELGKFDAVVA 126 (224)
T ss_pred CCCCCEEEECCCCCCHHHHHHHHC---CCEEEEEHHHHHHHHHHHHHCCCCCCCCCCCEEEECCHHH--HCCCCCCEEEE
T ss_conf 987677775588931544988847---9868662376899999986210021016700354530444--13898555675
Q ss_pred -CCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECC
Q ss_conf -2754450444442236672496789999998789999999960898389997758
Q gi|254780634|r 306 -DAPCSGTGTWRRRPDIKWRLSQKNLIERTEEQKKILEESAQFVRPEGYLVYITCS 360 (429)
Q Consensus 306 -DaPCSg~G~~rr~Pe~~w~~~~~~~~~~~~lQ~~iL~~a~~~lk~gG~lvYsTCS 360 (429)
| ++ -+-..+|+ ..+|.+-+.+.+.-=++-|+=-|
T Consensus 127 mD-------vl-------IHYp~~d~-------~~~l~~Laslt~~~~~ftfAP~T 161 (224)
T TIGR02021 127 MD-------VL-------IHYPAEDI-------AKALEHLASLTKERVIFTFAPKT 161 (224)
T ss_pred EH-------HH-------HHCCHHHH-------HHHHHHHHHHHCCCEEEEECCCC
T ss_conf 21-------22-------32022227-------99999988743586489867876
No 119
>pfam01795 Methyltransf_5 MraW methylase family. Members of this family are probably SAM dependent methyltransferases based on Escherichia coli mraW. This family appears to be related to pfam01596.
Probab=97.18 E-value=0.00094 Score=45.26 Aligned_cols=88 Identities=25% Similarity=0.266 Sum_probs=66.2
Q ss_pred CCCCCCCCCCCEEEECCCCCCHHHHHHHHHHCCCCEEHHHHCCHHHHHHHHHHHHHCCCCCCEEEECCC-----CCCC-C
Q ss_conf 211236666625860134688279999998616881005524989999999998750288608821554-----3445-7
Q gi|254780634|r 223 VSNLTAITNSSQILDFCAGGGGKTLALSMLLNNKGQIHAWDNNKSRMAPIVARIKRAGIHNVQLHSSWE-----SLRN-L 296 (429)
Q Consensus 223 ~~~~l~~~~g~~vLD~CAapGGKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~~~-----~~~~-~ 296 (429)
+...|.+++|..++|+--|.||.|..|.+.....|+|+|.|.++.=++..++++...+- ++.+..... .+.. .
T Consensus 12 vi~~L~~~~~g~yvD~T~G~GGHS~~iL~~~~~~~~li~iDrD~~ai~~a~~~l~~~~~-r~~~~~~nF~~l~~~l~~~~ 90 (310)
T pfam01795 12 VVELLNIKPDGIYIDCTLGGGGHSEAILEQLPEEGRLIGIDRDPQAIANAKERLKPFKG-RVTLIHSNFANLFAYLKELG 90 (310)
T ss_pred HHHHCCCCCCCEEEEECCCCCHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHCCCCCC-CEEEEECCHHHHHHHHHHCC
T ss_conf 99726838999999958897199999998489999799998989999999985302588-58999253757999998759
Q ss_pred CCCCCEEEECCCCCC
Q ss_conf 232467896275445
Q gi|254780634|r 297 QEHFTTVLVDAPCSG 311 (429)
Q Consensus 297 ~~~fd~vl~DaPCSg 311 (429)
-.++|.||+|-=+|.
T Consensus 91 ~~~vdGil~DLGvSS 105 (310)
T pfam01795 91 VGKVDGILFDLGVSS 105 (310)
T ss_pred CCCCCEEEEECCCCC
T ss_conf 876678999644681
No 120
>pfam05219 DREV DREV methyltransferase. This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown. However, these proteins appear to be related to other methyltransferases (Bateman A pers obs).
Probab=97.15 E-value=0.0026 Score=42.23 Aligned_cols=178 Identities=16% Similarity=0.213 Sum_probs=96.9
Q ss_pred HCCCHHHHHHHHHHCCH-HHHHHHHHHCCCCC-CCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 08998899999985744-89999998628986-11124778899899999898718875454754311345665444610
Q gi|254780634|r 124 GNIPQWLQSSFQSYFKD-TWLKEAKSLSMRAP-LDLRTNTLKVNRCKLFKNLCHYGVHHSSISRFGLRIPATKGKSRLPN 201 (429)
Q Consensus 124 ~s~P~WL~~~~~~~~ge-~~~~~l~a~~~~~p-l~iRvN~~k~~~~~~~~~L~~~gi~~~~~~~~~~~l~~~~~~~~~~~ 201 (429)
.++|+.+..++.....+ ++.+++........ ++..+ .+ .-....|.-. ...+.+ .|+ + +..+. .
T Consensus 6 ~~L~~~l~skFv~l~~D~eT~~FL~~s~~~S~~~~~q~--~h---sl~~~~L~~f-ms~Tdi--NG~-L----gRGsM-f 71 (265)
T pfam05219 6 HELPPRFQSKFVPSEPDATTQSFLENSKALSANIFTQL--WH---ALARSILSFF-MSQTDI--NGF-L----GRGSM-F 71 (265)
T ss_pred CCCCHHHHHHHHHCCCCHHHHHHHHHHHHCCHHHHHHH--HH---HHHHHHHHHH-HHHHHH--HHH-H----CCCCE-E
T ss_conf 54898899766622878889999996243126799999--99---9999999989-624216--656-4----57765-8
Q ss_pred HHCCHHHCCCEEEEECCCCCCCCCCC---CCCCCCEEEECCCCCCHHHHHHHHHHCCCCEEHHHHCCHHHHHHHHHHHHH
Q ss_conf 11096312654898415565421123---666662586013468827999999861688100552498999999999875
Q gi|254780634|r 202 VMNDITFQRGWFEIQDEGSQIVSNLT---AITNSSQILDFCAGGGGKTLALSMLLNNKGQIHAWDNNKSRMAPIVARIKR 278 (429)
Q Consensus 202 ~~~~~~f~~G~~~VQD~aSql~~~~l---~~~~g~~vLD~CAapGGKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r 278 (429)
++...-|.. -+-+... +.....++||+.||-|+=|.+|+.... .|+|.|.|.. ++.++++
T Consensus 72 V~S~~Q~~~----------LL~~~~~~~~~~~~~~~LLDlGAGdG~VT~~la~~F~---~V~aTE~S~~----Mr~rL~~ 134 (265)
T pfam05219 72 IFSEEQFRK----------LLVIGGFQPASGQEPVTLLDLGAGDGEITLRMAPTFE---EVYATELSWT----MRDRLKK 134 (265)
T ss_pred EECHHHHHH----------HHHCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHC---EEEEEECCHH----HHHHHHH
T ss_conf 844999999----------9724376788887766478835899789999997523---5888727899----9999997
Q ss_pred CCCCCCEEEECCCCCCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEE
Q ss_conf 02886088215543445723246789627544504444422366724967899999987899999999608983899977
Q gi|254780634|r 279 AGIHNVQLHSSWESLRNLQEHFTTVLVDAPCSGTGTWRRRPDIKWRLSQKNLIERTEEQKKILEESAQFVRPEGYLVYIT 358 (429)
Q Consensus 279 ~g~~~v~~~~~~~~~~~~~~~fd~vl~DaPCSg~G~~rr~Pe~~w~~~~~~~~~~~~lQ~~iL~~a~~~lk~gG~lvYsT 358 (429)
-|...+...+. .....+||.|-| .-++-|.- --..||+...+.|+|+|+||-++
T Consensus 135 rgf~vl~~~~~----~~~~~~fDvIsc------LNvLDRc~----------------~P~~LL~~i~~~L~P~G~lilAv 188 (265)
T pfam05219 135 KNYNVLTEIEW----QETDVNLDLILC------LNLLDRCF----------------DPFKLLEDIHLALAPNGRVIVAL 188 (265)
T ss_pred CCCEEEEEHHC----CCCCCCEEEEHH------HHHHHCCC----------------CHHHHHHHHHHHCCCCCEEEEEE
T ss_conf 59868750120----356874455422------24453138----------------86999999997249996799999
No 121
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=97.10 E-value=0.00089 Score=45.42 Aligned_cols=151 Identities=23% Similarity=0.269 Sum_probs=102.3
Q ss_pred CCCCCCCCCCCEEEECCCCCCHHHHHHHHHHCCCCEEHHHHCCHHHHHHHHHHHHHCCCCCCEEEECCC-----CCCC-C
Q ss_conf 211236666625860134688279999998616881005524989999999998750288608821554-----3445-7
Q gi|254780634|r 223 VSNLTAITNSSQILDFCAGGGGKTLALSMLLNNKGQIHAWDNNKSRMAPIVARIKRAGIHNVQLHSSWE-----SLRN-L 296 (429)
Q Consensus 223 ~~~~l~~~~g~~vLD~CAapGGKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~~~-----~~~~-~ 296 (429)
++.+|.+.|+...+|+--|.||.|-.|.+.....|+++++|.++.-+...++++...+- ++.+..... .+.. .
T Consensus 15 ~i~~L~~~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~~~-r~~~v~~~F~~l~~~l~~~~ 93 (314)
T COG0275 15 VVELLAPKPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEFDG-RVTLVHGNFANLAEALKELG 93 (314)
T ss_pred HHHHCCCCCCCEEEEECCCCCHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHCCCC-CEEEEECCHHHHHHHHHHCC
T ss_conf 99852648994799823777476899998589887089976898999999998530378-48999576878998887638
Q ss_pred CCCCCEEEECCCCCCC--------------HH--HHHH--------------HH------------HH-----------H
Q ss_conf 2324678962754450--------------44--4442--------------23------------66-----------7
Q gi|254780634|r 297 QEHFTTVLVDAPCSGT--------------GT--WRRR--------------PD------------IK-----------W 323 (429)
Q Consensus 297 ~~~fd~vl~DaPCSg~--------------G~--~rr~--------------Pe------------~~-----------w 323 (429)
.+++|.||+|-=-|.. |- +|=+ ++ .| .
T Consensus 94 i~~vDGiL~DLGVSS~QLD~~eRGFSf~~d~pLDMRMd~~~~lsA~evvN~~~e~~L~~I~~~yGEEr~arrIA~aIv~~ 173 (314)
T COG0275 94 IGKVDGILLDLGVSSPQLDDAERGFSFRKDGPLDMRMDQTQGLSAAEVVNTYSEEDLARIFKEYGEERFAKRIARAIVER 173 (314)
T ss_pred CCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_conf 87222799953678320288767860278898656748888978999985599999999999845176689999999998
Q ss_pred HC-----CHHHH--------------------------------HHHHHHHHHHHHHHHHHHCCCCEEEEE-ECCCCHHH
Q ss_conf 24-----96789--------------------------------999998789999999960898389997-75888242
Q gi|254780634|r 324 RL-----SQKNL--------------------------------IERTEEQKKILEESAQFVRPEGYLVYI-TCSILPEE 365 (429)
Q Consensus 324 ~~-----~~~~~--------------------------------~~~~~lQ~~iL~~a~~~lk~gG~lvYs-TCS~~~~E 365 (429)
|. |-.++ ++|..| .+.|.+|.++|+|||+|+-. =||+..
T Consensus 174 R~~~pi~tT~eLaeiI~~~~p~~~~~k~~hPAtr~FQAiRI~VNdEL~~L-~~~L~~a~~~L~~~GRl~VIsFHSLED-- 250 (314)
T COG0275 174 RKKKPIETTKELAEIIKSAIPAKEKRKKIHPATRTFQAIRIYVNDELEEL-EEALEAALDLLKPGGRLAVISFHSLED-- 250 (314)
T ss_pred HCCCCCCCHHHHHHHHHHHCCCHHCCCCCCCCHHHHHHHEEEEHHHHHHH-HHHHHHHHHHHCCCCEEEEEEECCHHH--
T ss_conf 62698766999999999867701113678950665634100005679999-999999999618896799999534289--
Q ss_pred CHHHHHHHHHHCCC
Q ss_conf 99989999985799
Q gi|254780634|r 366 NIQQINYFLSKNPH 379 (429)
Q Consensus 366 ne~vv~~fL~~~~~ 379 (429)
-.|+.|.+++..
T Consensus 251 --RiVK~ff~~~s~ 262 (314)
T COG0275 251 --RIVKNFFKELSK 262 (314)
T ss_pred --HHHHHHHHHHCC
T ss_conf --999999998404
No 122
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=97.09 E-value=0.00096 Score=45.18 Aligned_cols=135 Identities=19% Similarity=0.269 Sum_probs=96.9
Q ss_pred CCCCCEEEECCCCCCHHHHHHHHHHCCCCEEHHHHCCHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCCEEEECCC
Q ss_conf 66662586013468827999999861688100552498999999999875028860882155434457232467896275
Q gi|254780634|r 229 ITNSSQILDFCAGGGGKTLALSMLLNNKGQIHAWDNNKSRMAPIVARIKRAGIHNVQLHSSWESLRNLQEHFTTVLVDAP 308 (429)
Q Consensus 229 ~~~g~~vLD~CAapGGKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~~~~~~~~~~~fd~vl~DaP 308 (429)
.+|| ++||+.||-|--++.||.+ .-.|+|+|+++.-+..+.+-+..-|+ ++.+...|.....+.+.||.|+.-
T Consensus 121 i~pg-kaLDLGCG~GRNsLyLa~~---GfdVTA~D~N~~sl~~L~~ia~~E~L-~i~~~~yDIN~a~l~~~YDfI~ST-- 193 (289)
T PRK12335 121 VKPG-KALDLGCGQGRNSLYLALL---GFDVTAVDINQASLENLQQIAEKENL-NIRAGSYDINSASLQEEYDFILST-- 193 (289)
T ss_pred CCCC-CEEEECCCCCCCHHHHHHC---CCCEEEEECCHHHHHHHHHHHHHCCC-CCCCEEECCCCCCCCCCCCEEEEE--
T ss_conf 6887-4666047888227889757---98425886899999999999997198-877257516666667776789996--
Q ss_pred CCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCEE--EEEE------C----CCCHHHCHHHHHHHHHH
Q ss_conf 4450444442236672496789999998789999999960898389--9977------5----88824299989999985
Q gi|254780634|r 309 CSGTGTWRRRPDIKWRLSQKNLIERTEEQKKILEESAQFVRPEGYL--VYIT------C----SILPEENIQQINYFLSK 376 (429)
Q Consensus 309 CSg~G~~rr~Pe~~w~~~~~~~~~~~~lQ~~iL~~a~~~lk~gG~l--vYsT------C----S~~~~Ene~vv~~fL~~ 376 (429)
.|+ --+.|+.+. +|+.+.-..-.|||+= |-+- | |++-.|||- -.=
T Consensus 194 ----VV~-------mFL~~~~ip-------~iI~nMQ~~T~~gGyNlIV~am~T~d~pc~~pF~ftfk~gEL-----~~Y 250 (289)
T PRK12335 194 ----VVL-------MFLNPERIP-------DIIKNMQEHTNPGGYNLIVCAMDTEDYPCPMPFPFTFKEGEL-----KDY 250 (289)
T ss_pred ----EEE-------EEECHHHHH-------HHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCCCCCCCCHHH-----HHH
T ss_conf ----788-------642877869-------999999984479986899987147778899886625672068-----887
Q ss_pred CCCCEEEECCCCCCCCC
Q ss_conf 79979941430022234
Q gi|254780634|r 377 NPHFSIDSIIDDWNQLY 393 (429)
Q Consensus 377 ~~~~~~~~~~~~~~~~~ 393 (429)
..||+++......+.+.
T Consensus 251 Y~dWeiikYnE~~G~lH 267 (289)
T PRK12335 251 YQDWEILKYNENLGHLH 267 (289)
T ss_pred HCCCEEEEECCCCCHHH
T ss_conf 47877998326610433
No 123
>KOG1098 consensus
Probab=97.09 E-value=0.00089 Score=45.42 Aligned_cols=19 Identities=11% Similarity=-0.036 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q ss_conf 7999999999999758999
Q gi|254780634|r 42 DRASISNIVHDVLRKYLSS 60 (429)
Q Consensus 42 DR~~i~~lvyg~lR~~~~l 60 (429)
.+++.+.-.|-.|.....|
T Consensus 21 e~GyrsRsaFKLlQln~ky 39 (780)
T KOG1098 21 ELGYRSRSAFKLLQLNKKY 39 (780)
T ss_pred HHCHHHHHHHHHHHHHHHH
T ss_conf 8432678778999888775
No 124
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=97.02 E-value=0.0046 Score=40.57 Aligned_cols=126 Identities=15% Similarity=0.261 Sum_probs=84.9
Q ss_pred CCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHCCCCEEHHHHCCHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCC
Q ss_conf 42112366666258601346882799999986168810055249899999999987502886088215543445723246
Q gi|254780634|r 222 IVSNLTAITNSSQILDFCAGGGGKTLALSMLLNNKGQIHAWDNNKSRMAPIVARIKRAGIHNVQLHSSWESLRNLQEHFT 301 (429)
Q Consensus 222 l~~~~l~~~~g~~vLD~CAapGGKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~~~~~~~~~~~fd 301 (429)
.++.-|+.+||++|||.-||=||=+.+.|+..+ .+|+.+-+|+.-..-.+++++ |+. |++.-.| ...+.++||
T Consensus 158 ~i~~kl~l~~G~~VLeIGcGWGgla~~aA~~~g--~~VtgiTlS~eQ~~~a~~r~~--gl~-v~v~l~D--YRd~~g~fD 230 (383)
T PRK11705 158 LICRKLQLKPGMRVLDIGCGWGGLARYAAEHYG--VSVVGVTISAEQQKLAQERCA--GLP-VEIRLQD--YRDLNGQFD 230 (383)
T ss_pred HHHHHCCCCCCCEEEEECCCHHHHHHHHHHHCC--CEEEEEECCHHHHHHHHHHHC--CCC-CEEEECC--HHHCCCCCC
T ss_conf 999864899999798857874999999999749--759998588999999999973--898-7899715--244367735
Q ss_pred EEEECCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHCHHHHHHHHHH
Q ss_conf 789627544504444422366724967899999987899999999608983899977588824299989999985
Q gi|254780634|r 302 TVLVDAPCSGTGTWRRRPDIKWRLSQKNLIERTEEQKKILEESAQFVRPEGYLVYITCSILPEENIQQINYFLSK 376 (429)
Q Consensus 302 ~vl~DaPCSg~G~~rr~Pe~~w~~~~~~~~~~~~lQ~~iL~~a~~~lk~gG~lvYsTCS~~~~Ene~vv~~fL~~ 376 (429)
+|. ..|++-.= .++. -..-.....++|||||.++-=|=+... ....+..|..+
T Consensus 231 ~Iv------SIeM~EhV-------G~~~-------~~~yF~~i~~lLkp~G~~~lqtI~~~~--~~~~~d~fI~k 283 (383)
T PRK11705 231 RIV------SVGMFEHV-------GPKN-------YRTYFEVVDRCLKPDGLFLLHTIGSNK--TDTNVDPWINK 283 (383)
T ss_pred EEE------EEEHHHHC-------CHHH-------HHHHHHHHHHHCCCCCEEEEEEECCCC--CCCCCCHHHHH
T ss_conf 599------97148652-------8777-------999999999856999739999933667--77765512888
No 125
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=97.02 E-value=0.00052 Score=47.02 Aligned_cols=141 Identities=12% Similarity=0.184 Sum_probs=86.5
Q ss_pred CCCCCCCCCCEEEECCCCCCHHHHHHHHHHCCCCEEHHHHCCHHHHHHHHHHHHHCCC--CCCEEEECCC--CCCCCC-C
Q ss_conf 1123666662586013468827999999861688100552498999999999875028--8608821554--344572-3
Q gi|254780634|r 224 SNLTAITNSSQILDFCAGGGGKTLALSMLLNNKGQIHAWDNNKSRMAPIVARIKRAGI--HNVQLHSSWE--SLRNLQ-E 298 (429)
Q Consensus 224 ~~~l~~~~g~~vLD~CAapGGKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~--~~v~~~~~~~--~~~~~~-~ 298 (429)
+.+..|+.|++|||.|-|-|=-+ |.++-.+.-.|+.++.+++-|...+-|==--++ ..+++.-.|. ..+.+. +
T Consensus 127 v~~V~~~~G~rVLDtC~GLGYtA--i~a~~rGA~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e~V~~~~D~ 204 (287)
T COG2521 127 VELVKVKRGERVLDTCTGLGYTA--IEALERGAIHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAYEVVKDFDDE 204 (287)
T ss_pred HHEECCCCCCEEEEECCCCCHHH--HHHHHCCCCEEEEEEECCCEEEEECCCCCCCCCCCCCCEEECCCHHHHHHCCCCC
T ss_conf 62444366878443246713899--9998758748999960877277413588984202003178616599997418865
Q ss_pred CCCEEEECCCCCCC-HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCC-HHHCHHHHHHHHHH
Q ss_conf 24678962754450-44444223667249678999999878999999996089838999775888-24299989999985
Q gi|254780634|r 299 HFTTVLVDAPCSGT-GTWRRRPDIKWRLSQKNLIERTEEQKKILEESAQFVRPEGYLVYITCSIL-PEENIQQINYFLSK 376 (429)
Q Consensus 299 ~fd~vl~DaPCSg~-G~~rr~Pe~~w~~~~~~~~~~~~lQ~~iL~~a~~~lk~gG~lvYsTCS~~-~~Ene~vv~~fL~~ 376 (429)
.||.|+-|.|-=+. |-+ | + .+.-++-.+.|||||+|.-=|-..- .--+-++-+...++
T Consensus 205 sfDaIiHDPPRfS~AgeL-------Y--s-----------eefY~El~RiLkrgGrlFHYvG~Pg~ryrG~d~~~gVa~R 264 (287)
T COG2521 205 SFDAIIHDPPRFSLAGEL-------Y--S-----------EEFYRELYRILKRGGRLFHYVGNPGKRYRGLDLPKGVAER 264 (287)
T ss_pred CCCEEEECCCCCCHHHHH-------H--H-----------HHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCHHHHHHHH
T ss_conf 301686079733102357-------6--8-----------9999999997076980799727987402467714789999
Q ss_pred --CCCCEEEECC
Q ss_conf --7997994143
Q gi|254780634|r 377 --NPHFSIDSII 386 (429)
Q Consensus 377 --~~~~~~~~~~ 386 (429)
.-+|..+..-
T Consensus 265 Lr~vGF~~v~~~ 276 (287)
T COG2521 265 LRRVGFEVVKKV 276 (287)
T ss_pred HHHCCCEEEEEE
T ss_conf 986173444323
No 126
>PRK05785 hypothetical protein; Provisional
Probab=96.95 E-value=0.0014 Score=44.00 Aligned_cols=77 Identities=19% Similarity=0.229 Sum_probs=50.1
Q ss_pred CCCCCCEEEECCCCCCHHHHHHHHHHCCCCEEHHHHCCHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCCEEEECC
Q ss_conf 66666258601346882799999986168810055249899999999987502886088215543445723246789627
Q gi|254780634|r 228 AITNSSQILDFCAGGGGKTLALSMLLNNKGQIHAWDNNKSRMAPIVARIKRAGIHNVQLHSSWESLRNLQEHFTTVLVDA 307 (429)
Q Consensus 228 ~~~~g~~vLD~CAapGGKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~~~~~~~~~~~fd~vl~Da 307 (429)
+.+++.+|||+|+|.|-=+.++ .....++++|+++.=++..+....+ +..+...++.....||.|.+
T Consensus 48 ~~~~~~~vLDva~GTGd~a~~l----~~~~~v~~~D~s~~ML~~a~~~~~~-------v~~~ae~LPf~d~sFD~vt~-- 114 (225)
T PRK05785 48 DGKSPLKVLDAGAGPGNMAYHL----RKIRYVVALDYTEEMLRLNLVADDK-------VVGSFEAMPFRDKSFDLVMS-- 114 (225)
T ss_pred CCCCCCEEEEECCCCHHHHHHH----HCCCEEEEEECCHHHHHHHHHCCCC-------EEEHHHHCCCCCCCEEEEEE--
T ss_conf 6788882899568843999996----3478699998899999987643211-------37318539999882527763--
Q ss_pred CCCCCHHHHHHHHH
Q ss_conf 54450444442236
Q gi|254780634|r 308 PCSGTGTWRRRPDI 321 (429)
Q Consensus 308 PCSg~G~~rr~Pe~ 321 (429)
+-|. |.-||+
T Consensus 115 ---~Fgl-RN~~d~ 124 (225)
T PRK05785 115 ---GYAL-HASDDI 124 (225)
T ss_pred ---EEEE-ECCCCH
T ss_conf ---4430-048889
No 127
>pfam02527 GidB rRNA small subunit methyltransferase G. This is a family of bacterial glucose inhibited division proteins these are probably involved in the regulation of cell devision. GidB has been shown to be a methyltransferase G specific to the rRNA small subunit. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. GidB specifically methylates the N7 position of a guanosine in 16S rRNA.
Probab=96.95 E-value=0.013 Score=37.51 Aligned_cols=127 Identities=12% Similarity=0.148 Sum_probs=87.0
Q ss_pred CCCEEEECCCCCCHHHHHHHHHHCCCCEEHHHHCCHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCCEEEECCCCC
Q ss_conf 66258601346882799999986168810055249899999999987502886088215543445723246789627544
Q gi|254780634|r 231 NSSQILDFCAGGGGKTLALSMLLNNKGQIHAWDNNKSRMAPIVARIKRAGIHNVQLHSSWESLRNLQEHFTTVLVDAPCS 310 (429)
Q Consensus 231 ~g~~vLD~CAapGGKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~~~~~~~~~~~fd~vl~DaPCS 310 (429)
.+..|+|+.+|+|==.+-||-.+. ...++-+|.+.+|..-+++-..++|+.|+++.............||.|..=|=
T Consensus 48 ~~~~ilDiGSGaGfPGi~LAI~~p-~~~~~LvEs~~KK~~FL~~v~~~L~L~nv~v~~~R~E~~~~~~~~D~v~aRA~-- 124 (184)
T pfam02527 48 IRIKVADVGSGAGFPGIPLAIAFP-DKKLTLLESLLKKINFLEELKKELNLENVTIVHARAEEYQHEEQYDVITSRAV-- 124 (184)
T ss_pred CCCEEEECCCCCCCHHHHHHHHCC-CCEEEEEECHHHHHHHHHHHHHHCCCCCEEEEECCHHHCCCCCCCCEEEECHH--
T ss_conf 798688347988846799999677-85599992828999999999998599976999560441464467878998100--
Q ss_pred CCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHCHHHHHHHHHHCCCCEEEECC
Q ss_conf 5044444223667249678999999878999999996089838999775888242999899999857997994143
Q gi|254780634|r 311 GTGTWRRRPDIKWRLSQKNLIERTEEQKKILEESAQFVRPEGYLVYITCSILPEENIQQINYFLSKNPHFSIDSII 386 (429)
Q Consensus 311 g~G~~rr~Pe~~w~~~~~~~~~~~~lQ~~iL~~a~~~lk~gG~lvYsTCS~~~~Ene~vv~~fL~~~~~~~~~~~~ 386 (429)
+.+. .+++-+.+++++||+++.--=--..+|-++- +.-++. -+.+++.+.
T Consensus 125 -----------------------a~l~-~ll~~~~~~l~~~g~~i~~KG~~~~~El~~a-~~~~~~-l~~~~~~v~ 174 (184)
T pfam02527 125 -----------------------ASLN-ELTEWALPLLKPGGYFLAYKGKQAEDEIEEL-DKACQK-LGVEVLFVP 174 (184)
T ss_pred -----------------------CCHH-HHHHHHHHHCCCCCEEEEECCCCHHHHHHHH-HHHHHH-HCCEEEECC
T ss_conf -----------------------5799-9999999863889899998899989999987-877998-297797648
No 128
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=96.81 E-value=0.0024 Score=42.53 Aligned_cols=99 Identities=14% Similarity=0.167 Sum_probs=79.2
Q ss_pred CEEEECCCCCCHHHHHHHHHHCCCCEEHHHHCCHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCCEEEECCCCCCC
Q ss_conf 25860134688279999998616881005524989999999998750288608821554344572324678962754450
Q gi|254780634|r 233 SQILDFCAGGGGKTLALSMLLNNKGQIHAWDNNKSRMAPIVARIKRAGIHNVQLHSSWESLRNLQEHFTTVLVDAPCSGT 312 (429)
Q Consensus 233 ~~vLD~CAapGGKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~~~~~~~~~~~fd~vl~DaPCSg~ 312 (429)
+.+.|+.||.|-=+..-|+. .-+|+|.+.+++|...+.+|++-.|..|+++...|+....+ +..|.|+|.-
T Consensus 34 d~~~DLGaGsGiLs~~Aa~~---A~rViAiE~dPk~a~~a~eN~~v~g~~n~evv~gDA~~y~f-e~ADvvicEm----- 104 (252)
T COG4076 34 DTFADLGAGSGILSVVAAHA---AERVIAIEKDPKRARLAEENLHVPGDVNWEVVVGDARDYDF-ENADVVICEM----- 104 (252)
T ss_pred HCEEECCCCCCHHHHHHHHH---HCEEEEEECCCHHHHHHHHCCCCCCCCCEEEEECCCCCCCC-CCCCEEHHHH-----
T ss_conf 10563468863288988753---20278874180787776505777887646898055321332-3453408777-----
Q ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEE
Q ss_conf 4444422366724967899999987899999999608983899
Q gi|254780634|r 313 GTWRRRPDIKWRLSQKNLIERTEEQKKILEESAQFVRPEGYLV 355 (429)
Q Consensus 313 G~~rr~Pe~~w~~~~~~~~~~~~lQ~~iL~~a~~~lk~gG~lv 355 (429)
-|..-+-+-|-..++++.++|+-.++++
T Consensus 105 ---------------lDTaLi~E~qVpV~n~vleFLr~d~tii 132 (252)
T COG4076 105 ---------------LDTALIEEKQVPVINAVLEFLRYDPTII 132 (252)
T ss_pred ---------------HHHHHHCCCCCHHHHHHHHHHHCCCCCC
T ss_conf ---------------6677633421289999999863388252
No 129
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=96.75 E-value=0.027 Score=35.38 Aligned_cols=125 Identities=14% Similarity=0.181 Sum_probs=85.2
Q ss_pred CCCCCCCCCCCEEEECCCCCCHHHHHHHHHHCCC-------------------------------C-------EEHHHHC
Q ss_conf 2112366666258601346882799999986168-------------------------------8-------1005524
Q gi|254780634|r 223 VSNLTAITNSSQILDFCAGGGGKTLALSMLLNNK-------------------------------G-------QIHAWDN 264 (429)
Q Consensus 223 ~~~~l~~~~g~~vLD~CAapGGKt~~la~~~~~~-------------------------------g-------~i~A~D~ 264 (429)
+..+.+.++++..+|.-||.|+=..--|.+..|- + .++++|+
T Consensus 183 il~lagw~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~~G~Di 262 (381)
T COG0116 183 ILLLAGWKPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPIIYGSDI 262 (381)
T ss_pred HHHHCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCEEEEECC
T ss_conf 99973999998341688773479999997344568763322004554321388899999999998651476665898748
Q ss_pred CHHHHHHHHHHHHHCCCCC-CEEEECCCCCCCCC-CCCCEEEECCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
Q ss_conf 9899999999987502886-08821554344572-324678962754450444442236672496789999998789999
Q gi|254780634|r 265 NKSRMAPIVARIKRAGIHN-VQLHSSWESLRNLQ-EHFTTVLVDAPCSGTGTWRRRPDIKWRLSQKNLIERTEEQKKILE 342 (429)
Q Consensus 265 ~~~Rl~~l~~~~~r~g~~~-v~~~~~~~~~~~~~-~~fd~vl~DaPCSg~G~~rr~Pe~~w~~~~~~~~~~~~lQ~~iL~ 342 (429)
+++=++..+.|++++|+.. |++...+....... +.+|.|+.++|-- . |+..+ ....+|=.++..
T Consensus 263 d~r~i~~Ak~NA~~AGv~d~I~f~~~d~~~l~~~~~~~gvvI~NPPYG---e---------Rlg~~--~~v~~LY~~fg~ 328 (381)
T COG0116 263 DPRHIEGAKANARAAGVGDLIEFKQADATDLKEPLEEYGVVISNPPYG---E---------RLGSE--ALVAKLYREFGR 328 (381)
T ss_pred CHHHHHHHHHHHHHCCCCCEEEEEECCHHHCCCCCCCCCEEEECCCCH---H---------HCCCH--HHHHHHHHHHHH
T ss_conf 989999999989976988328999744321668766699899589830---1---------11770--469999999999
Q ss_pred HHHHHHCCCCEEEEEECCC
Q ss_conf 9999608983899977588
Q gi|254780634|r 343 ESAQFVRPEGYLVYITCSI 361 (429)
Q Consensus 343 ~a~~~lk~gG~lvYsTCS~ 361 (429)
...+.++--+..|.+|-.-
T Consensus 329 ~lk~~~~~ws~~v~tt~e~ 347 (381)
T COG0116 329 TLKRLLAGWSRYVFTTSED 347 (381)
T ss_pred HHHHHHCCCCEEEEECCHH
T ss_conf 9998725773699976677
No 130
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=96.74 E-value=0.0026 Score=42.30 Aligned_cols=71 Identities=15% Similarity=0.137 Sum_probs=55.0
Q ss_pred CCCEEEECCCCCCHHHHHHHHHHCCCCEEHHHHCCHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCCEEEEC
Q ss_conf 6625860134688279999998616881005524989999999998750288608821554344572324678962
Q gi|254780634|r 231 NSSQILDFCAGGGGKTLALSMLLNNKGQIHAWDNNKSRMAPIVARIKRAGIHNVQLHSSWESLRNLQEHFTTVLVD 306 (429)
Q Consensus 231 ~g~~vLD~CAapGGKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~~~~~~~~~~~fd~vl~D 306 (429)
.|.+|||+|||+|=-+ ||+...+...+++.|+.+.....+.-|.+-.|+. +.+...+... ..+.||.||+-
T Consensus 79 rgkrVLd~gagsgLva--IAaa~aGA~~v~a~d~~P~~~~ai~lNa~angv~-i~~~~~d~~g--~~~~~Dl~Lag 149 (218)
T COG3897 79 RGKRVLDLGAGSGLVA--IAAARAGAAEVVAADIDPWLEQAIRLNAAANGVS-ILFTHADLIG--SPPAFDLLLAG 149 (218)
T ss_pred CCCEEEECCCCCCHHH--HHHHHHHHHHHHHCCCCHHHHHHHHCCHHHCCCE-EEEEECCCCC--CCCCEEEEEEE
T ss_conf 3653244156667088--9999850378876278847888853062215621-6774313368--98640389850
No 131
>TIGR01951 nusB transcription antitermination factor NusB; InterPro: IPR011605 The NusB protein is involved in the regulation of rRNA biosynthesis by transcriptional antitermination. The antitermination proteins of Escherichia coli are recruited in the replication cycle of Bacteriophage lambda, where they play an important role in switching from the lysogenic to the lytic cycle. The solution structure indicates that the protein folds into an alpha/alpha-helical topology consisting of six helices; the arginine-rich N-terminus appears to be disordered .; GO: 0003715 transcription termination factor activity, 0006353 transcription termination.
Probab=96.71 E-value=0.029 Score=35.10 Aligned_cols=108 Identities=12% Similarity=0.152 Sum_probs=75.0
Q ss_pred CHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCC----CCCHHHHHHHHH---HHHHHHHHHHHHHHHHCCCC-C----
Q ss_conf 71689999999999999569978999999998685----889557999999---99999975899999705689-6----
Q gi|254780634|r 2 RLGGQIAAAIEILKDIRTHKKPITNSLKDWGMSHR----FAGSSDRASISN---IVHDVLRKYLSSAYIMDSDD-P---- 69 (429)
Q Consensus 2 ~~~aR~~AA~eiL~~v~~~~~~ad~~L~~~~~~~r----~lgs~DR~~i~~---lvyg~lR~~~~ld~il~~~~-~---- 69 (429)
|-.||. .|++.|.+++-++...+.+...+..... ..+.+|..++.. ++-|+++|.-.||.+|++.. .
T Consensus 1 R~~aR~-~a~q~Ly~~e~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~f~~l~~Gv~~~~~~iD~~I~~~La~~W~l 79 (140)
T TIGR01951 1 RRKARE-LAFQALYQLELRGEDIDSLVEELALEEDDEAEDIDKKDKEYAEKFAELVRGVLENLEEIDELIEKHLAKDWTL 79 (140)
T ss_pred CHHHHH-HHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH
T ss_conf 958889-9999999985279988899999998873168984646689899999999899999998899998886347972
Q ss_pred -------HH----HHHHHHHHHCCCCHHH--HHHHHHHHHHC-CCCCHHHHHHHH
Q ss_conf -------79----9999999743889899--99988543303-433204677544
Q gi|254780634|r 70 -------ES----LVYAVIMKDWDIPWEK--MLSMLKEDLFS-PPLPKESVIKSF 110 (429)
Q Consensus 70 -------r~----~~~~~l~~~~~~~~~~--~v~~~~~~~~~-~~~~~~~~~~~~ 110 (429)
|+ -+|.+++....+|..- ++++.++.... .......+++.+
T Consensus 80 ~RL~~VdraILRl~~yEl~~~~~D~P~~VA~~InEAielAK~ys~~~s~kFiNGv 134 (140)
T TIGR01951 80 ERLSKVDRAILRLAAYELLYLKKDVPVKVAVVINEAIELAKKYSDDKSSKFINGV 134 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHH
T ss_conf 3512878999999999998636898940543257899999984268764137877
No 132
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=96.55 E-value=0.016 Score=36.82 Aligned_cols=102 Identities=11% Similarity=0.135 Sum_probs=67.9
Q ss_pred CCCCCCCCEEEECCCCCCHHHHHHHHHHCCCCEEHHHHCCHHHHHHHHHHHHHCCCCCCEEEECCCC---CCCCCCCCCE
Q ss_conf 2366666258601346882799999986168810055249899999999987502886088215543---4457232467
Q gi|254780634|r 226 LTAITNSSQILDFCAGGGGKTLALSMLLNNKGQIHAWDNNKSRMAPIVARIKRAGIHNVQLHSSWES---LRNLQEHFTT 302 (429)
Q Consensus 226 ~l~~~~g~~vLD~CAapGGKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~~~~---~~~~~~~fd~ 302 (429)
..+..+|++|+=.-+||.|=......+..+..+|++.|++++|++..+ ++|...+ +...+.. .....+.||.
T Consensus 164 ~~~~~~g~~VlV~G~G~iGl~~~~~ak~~Ga~~Vi~~d~~~~rl~~a~----~~Ga~~~-i~~~~~~~~~~~~~~g~~Dv 238 (343)
T PRK09880 164 QAGDLQGKRVFISGVGPIGCLIVSAVKTLGAAEIVCADLSPRSLSLAR----QMGADVL-VNPQNDDMDHWKAEKGYFDV 238 (343)
T ss_pred HCCCCCCCEEEEECCCHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHH----HCCCCEE-ECCCCCCHHHHHHHCCCCCE
T ss_conf 247756988999847767999999999869987999979789999999----7299799-87987439999963699778
Q ss_pred EEECCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECC
Q ss_conf 8962754450444442236672496789999998789999999960898389997758
Q gi|254780634|r 303 VLVDAPCSGTGTWRRRPDIKWRLSQKNLIERTEEQKKILEESAQFVRPEGYLVYITCS 360 (429)
Q Consensus 303 vl~DaPCSg~G~~rr~Pe~~w~~~~~~~~~~~~lQ~~iL~~a~~~lk~gG~lvYsTCS 360 (429)
|+ | |+|... .++.+.+++++||+++..-..
T Consensus 239 vi-e--~~G~~~-------------------------~~~~al~~~r~gG~iv~vG~~ 268 (343)
T PRK09880 239 SF-E--VSGHPS-------------------------SVNTCLEVTRAKGVMVQVGMG 268 (343)
T ss_pred EE-E--ECCCHH-------------------------HHHHHHHHCCCCEEEEEEECC
T ss_conf 99-9--219999-------------------------999999737798399999727
No 133
>pfam04445 DUF548 Protein of unknown function (DUF548). Protein of unknown function found in proteobacteria. In Salmonella typhimurium, expression of this protein is regulated by heat shock.
Probab=96.51 E-value=0.0058 Score=39.89 Aligned_cols=86 Identities=17% Similarity=0.207 Sum_probs=66.7
Q ss_pred CCCCCCCCCCCCCC--EEEECCCCCCHHHHHHHHHHCCCCEEHHHHCCHHHHHHHHHHHHHCCC---------CCCEEEE
Q ss_conf 65421123666662--586013468827999999861688100552498999999999875028---------8608821
Q gi|254780634|r 220 SQIVSNLTAITNSS--QILDFCAGGGGKTLALSMLLNNKGQIHAWDNNKSRMAPIVARIKRAGI---------HNVQLHS 288 (429)
Q Consensus 220 Sql~~~~l~~~~g~--~vLD~CAapGGKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~---------~~v~~~~ 288 (429)
+|+++.+++.+++. +|||+.||=|.-++.||++ + -.|+++|.|+-=...|.+.++|+-. .+.++..
T Consensus 62 ~e~l~KAvG~k~~~~p~VlDATAGLG~DafiLAsL-G--~~VtliEr~pvl~~LL~Dal~RA~~~~~~~~~~~~rm~L~~ 138 (235)
T pfam04445 62 GEAIAKAVGIKGGYLPTVLDATAGLGRDAFVLASL-G--CRVRLVERHPVVAALLEDGLQRAYQDPEIGAWLQARLHLLH 138 (235)
T ss_pred HHHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHC-C--CEEEEEECCHHHHHHHHHHHHHHHHCCHHHHHHHHHCEEEC
T ss_conf 15899986678899983898787757889999818-9--96999978899999999999998748155799996289983
Q ss_pred CCCC--CCCCCCCCCEEEECCC
Q ss_conf 5543--4457232467896275
Q gi|254780634|r 289 SWES--LRNLQEHFTTVLVDAP 308 (429)
Q Consensus 289 ~~~~--~~~~~~~fd~vl~DaP 308 (429)
.+.. +......||.|.+|.=
T Consensus 139 gds~~~l~~~~~~~DvIYLDPM 160 (235)
T pfam04445 139 GSSADQLEPNIDQPDVVYLDPM 160 (235)
T ss_pred CCHHHHHHHCCCCCCEEEECCC
T ss_conf 8879997524689878997376
No 134
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=96.51 E-value=0.054 Score=33.25 Aligned_cols=139 Identities=18% Similarity=0.200 Sum_probs=100.7
Q ss_pred CCCCEEEECCCCCCHHHHHHHHHHCCCCEEHHHHCCHHHHHHHHHHHHHCCCCC-CEEEECCCCCCCCCCCCCEEEECCC
Q ss_conf 666258601346882799999986168810055249899999999987502886-0882155434457232467896275
Q gi|254780634|r 230 TNSSQILDFCAGGGGKTLALSMLLNNKGQIHAWDNNKSRMAPIVARIKRAGIHN-VQLHSSWESLRNLQEHFTTVLVDAP 308 (429)
Q Consensus 230 ~~g~~vLD~CAapGGKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~-v~~~~~~~~~~~~~~~fd~vl~DaP 308 (429)
....+|||+|.|.|-=.+.|+....+ ..++|+|+|+.-|+..++|+.+.++.+ +.+...+....-..++||.|+--+|
T Consensus 134 ~~~~~ILDLGTGSGcIaISLa~e~p~-a~v~avDIS~~AL~vAk~Na~~~~v~~ri~fi~sdwfe~l~~~kFDlIVSNPP 212 (503)
T PRK01544 134 DKFLNILELGTGSGCIAISLLCELPN-ANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFENIGKQKFDFIVSNPP 212 (503)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHCCC-CEEEEEECCHHHHHHHHHHHHHCCCCCCEEEEECCCHHCCCCCCCCEEEECCC
T ss_conf 55772788466679999999986789-98999989899999999999980882017999655310158887247983899
Q ss_pred CCCCHHH--------HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHCHHHHHHHHHH
Q ss_conf 4450444--------4422366724967899999987899999999608983899977588824299989999985
Q gi|254780634|r 309 CSGTGTW--------RRRPDIKWRLSQKNLIERTEEQKKILEESAQFVRPEGYLVYITCSILPEENIQQINYFLSK 376 (429)
Q Consensus 309 CSg~G~~--------rr~Pe~~w~~~~~~~~~~~~lQ~~iL~~a~~~lk~gG~lvYsTCS~~~~Ene~vv~~fL~~ 376 (429)
-=.+..+ ...|.+-.--....+.. =+.|..+|.++|+|||.|+.= +=-...|.|-+=|+..
T Consensus 213 YI~~~e~~~L~~eV~~yEP~lAL~ggeDGL~~----Yr~Ia~~a~~~Lkp~G~l~lE---IGy~Q~e~V~~IF~~~ 281 (503)
T PRK01544 213 YISHSEKSEMAIETINYEPSIALFAEEDGLQA----YFIIAENAKQFLKPNGKIILE---IGFKQAEAVTQIFLDH 281 (503)
T ss_pred CCCHHHHHHCCHHHHCCCCHHHHCCCCCCHHH----HHHHHHHHHHHCCCCCEEEEE---ECCCHHHHHHHHHHHC
T ss_conf 88756666527665316937886488762899----999999889852889889999---7878689999999965
No 135
>pfam07021 MetW Methionine biosynthesis protein MetW. This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In Pseudomonas putida, as in gram-positive bacteria and certain fungi, the second and third steps are a direct sulfhydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells.
Probab=96.42 E-value=0.0049 Score=40.38 Aligned_cols=71 Identities=20% Similarity=0.221 Sum_probs=47.0
Q ss_pred CCCCCEEEECCCCCCHHHHHHHHHHCCCCEEHHHHCCHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCCEEEE
Q ss_conf 66662586013468827999999861688100552498999999999875028860882155434457232467896
Q gi|254780634|r 229 ITNSSQILDFCAGGGGKTLALSMLLNNKGQIHAWDNNKSRMAPIVARIKRAGIHNVQLHSSWESLRNLQEHFTTVLV 305 (429)
Q Consensus 229 ~~~g~~vLD~CAapGGKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~~~~~~~~~~~fd~vl~ 305 (429)
.+||.+|||+.||.|.=..+|.+. ..-.++.+|+++..+....++ |+..++..-+....+...++||.|++
T Consensus 11 I~~~srVLDlGCG~G~ll~~L~~~--k~v~~~GvEid~~~v~~a~~k----g~~Vi~~D~d~~l~~f~d~sFD~VIl 81 (193)
T pfam07021 11 IPPGSRVLDLGCGDGSLLYLLQEE--KQVDGRGIELDAAGVAECVAK----GLSVIQGDADKGLEHFPDKSFDYVIL 81 (193)
T ss_pred CCCCCEEEEECCCCCHHHHHHHHC--CCCCEEEECCCHHHHHHHHHC----CCCEECCCHHHCHHHCCCCCCCEEEH
T ss_conf 589698998368898999999876--698769833899999999864----79545077445974577678037869
No 136
>KOG2899 consensus
Probab=96.33 E-value=0.0091 Score=38.53 Aligned_cols=108 Identities=23% Similarity=0.294 Sum_probs=72.3
Q ss_pred CCCEEEECCCCCCHHHHHHHHHHCCCCEEHHHHCCHHHHHHHHHHHHHCCC-----C-----------------------
Q ss_conf 662586013468827999999861688100552498999999999875028-----8-----------------------
Q gi|254780634|r 231 NSSQILDFCAGGGGKTLALSMLLNNKGQIHAWDNNKSRMAPIVARIKRAGI-----H----------------------- 282 (429)
Q Consensus 231 ~g~~vLD~CAapGGKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~-----~----------------------- 282 (429)
.+..+||..|-.|.=|.+||...+.. .|+.+||++..++..+++++-.-- .
T Consensus 58 ~~~~~LDIGCNsG~lt~~iak~F~~r-~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~a~~a 136 (288)
T KOG2899 58 EPKQALDIGCNSGFLTLSIAKDFGPR-RILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNEADRA 136 (288)
T ss_pred CCCEEEECCCCCCHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 76205750677546589999860643-34676156899999997356601010334578754335444541012446651
Q ss_pred -------CCEE------EECCCCCCCCCCCCCEEEECCCCCCCHHHHHHHHHHHH-C--CHHHHHHHHHHHHHHHHHHHH
Q ss_conf -------6088------21554344572324678962754450444442236672-4--967899999987899999999
Q gi|254780634|r 283 -------NVQL------HSSWESLRNLQEHFTTVLVDAPCSGTGTWRRRPDIKWR-L--SQKNLIERTEEQKKILEESAQ 346 (429)
Q Consensus 283 -------~v~~------~~~~~~~~~~~~~fd~vl~DaPCSg~G~~rr~Pe~~w~-~--~~~~~~~~~~lQ~~iL~~a~~ 346 (429)
|+.. ...++.+.-...+||.|||= | . .||- + .-+.+ +.++.+.++
T Consensus 137 ~t~~~p~n~~f~~~n~vle~~dfl~~~~~~fDiIlcL---S-i--------TkWIHLNwgD~GL-------~~ff~kis~ 197 (288)
T KOG2899 137 FTTDFPDNVWFQKENYVLESDDFLDMIQPEFDIILCL---S-I--------TKWIHLNWGDDGL-------RRFFRKISS 197 (288)
T ss_pred CCCCCCCCHHCCCCCEEEECCHHHHHCCCCCCEEEEE---E-E--------EEEEECCCCCHHH-------HHHHHHHHH
T ss_conf 0036772010132337986004555056542279997---7-3--------3467645645789-------999999998
Q ss_pred HHCCCCEEEEEE
Q ss_conf 608983899977
Q gi|254780634|r 347 FVRPEGYLVYIT 358 (429)
Q Consensus 347 ~lk~gG~lvYsT 358 (429)
+|.|||+||---
T Consensus 198 ll~pgGiLvvEP 209 (288)
T KOG2899 198 LLHPGGILVVEP 209 (288)
T ss_pred HHCCCCEEEECC
T ss_conf 608685799758
No 137
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=96.33 E-value=0.016 Score=36.88 Aligned_cols=98 Identities=21% Similarity=0.323 Sum_probs=59.1
Q ss_pred CCCEEE-EECCCCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHCC--CCEEHHHHCCHHHHHHHHHHHHHCCCCCCE
Q ss_conf 265489-84155654211236666625860134688279999998616--881005524989999999998750288608
Q gi|254780634|r 209 QRGWFE-IQDEGSQIVSNLTAITNSSQILDFCAGGGGKTLALSMLLNN--KGQIHAWDNNKSRMAPIVARIKRAGIHNVQ 285 (429)
Q Consensus 209 ~~G~~~-VQD~aSql~~~~l~~~~g~~vLD~CAapGGKt~~la~~~~~--~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~ 285 (429)
..|+|. +.|.-.+++...+ +.....|||+.||-|-=+.+|++.+.. ...++..|+++.=+....++-. ++.
T Consensus 63 ~~G~y~pl~~~i~~~~~~~~-~~~~~~ilD~GCGEGyYl~~l~~~l~~~~~~~~~G~DiSK~ai~~Aak~~~-----~~~ 136 (272)
T PRK11088 63 DAGHYQPLRDAVANLLAERL-DEKATAILDIGCGEGYYTHALADALPEVTTCQLFGLDISKVAIKYAAKRYP-----QVT 136 (272)
T ss_pred HCCCCHHHHHHHHHHHHHHC-CCCCCEEEEECCCCCHHHHHHHHHHHCCCCCCEEEEECCHHHHHHHHCCCC-----CCE
T ss_conf 76884799999999999756-777864888158777899999997411578737998117999999962688-----854
Q ss_pred E-EECCCCCCCCCCCCCEEE-ECCCCCCC
Q ss_conf 8-215543445723246789-62754450
Q gi|254780634|r 286 L-HSSWESLRNLQEHFTTVL-VDAPCSGT 312 (429)
Q Consensus 286 ~-~~~~~~~~~~~~~fd~vl-~DaPCSg~ 312 (429)
. ..+...++-..+.+|.|| +++|-.+.
T Consensus 137 ~~Va~~~~lP~~d~s~D~vl~vFsP~~~~ 165 (272)
T PRK11088 137 FCVASSHRLPFADQSLDAIIRIYAPCKAE 165 (272)
T ss_pred EEEEECCCCCCCCCCCEEEEEEECCCCHH
T ss_conf 99961001888766540899984378858
No 138
>KOG2730 consensus
Probab=96.31 E-value=0.0017 Score=43.41 Aligned_cols=108 Identities=19% Similarity=0.288 Sum_probs=72.4
Q ss_pred HCCCEEEEECCCCC--CCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHCCCCEEHHHHCCHHHHHHHHHHHHHCCCCC-C
Q ss_conf 12654898415565--42112366666258601346882799999986168810055249899999999987502886-0
Q gi|254780634|r 208 FQRGWFEIQDEGSQ--IVSNLTAITNSSQILDFCAGGGGKTLALSMLLNNKGQIHAWDNNKSRMAPIVARIKRAGIHN-V 284 (429)
Q Consensus 208 f~~G~~~VQD~aSq--l~~~~l~~~~g~~vLD~CAapGGKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~-v 284 (429)
..+|+|+|--+.=. ++-.....-.-+.|+|+.+|-||-|++.|... -.|+|+|+++-|+...++|++-.|+.+ |
T Consensus 69 d~e~wfsvTpe~ia~~iA~~v~~~~~~~~iidaf~g~gGntiqfa~~~---~~VisIdiDPikIa~AkhNaeiYGI~~rI 145 (263)
T KOG2730 69 DREGWFSVTPEKIAEHIANRVVACMNAEVIVDAFCGVGGNTIQFALQG---PYVIAIDIDPVKIACARHNAEVYGVPDRI 145 (263)
T ss_pred CCCCEEEECCHHHHHHHHHHHHHHCCCCHHHHHHHCCCCHHHHHHHHC---CEEEEEECCHHHHHHHHCCCEEECCCCEE
T ss_conf 424547725189999998788873374300254536884288998718---80799852678888776065032577505
Q ss_pred EEEECCCCC-----CCCCCCCCEEEECCCCCCCHHHHHH
Q ss_conf 882155434-----4572324678962754450444442
Q gi|254780634|r 285 QLHSSWESL-----RNLQEHFTTVLVDAPCSGTGTWRRR 318 (429)
Q Consensus 285 ~~~~~~~~~-----~~~~~~fd~vl~DaPCSg~G~~rr~ 318 (429)
.+..+|... +..+...|.|.+-.|=+|.|-.+..
T Consensus 146 tFI~GD~ld~~~~lq~~K~~~~~vf~sppwggp~y~~~~ 184 (263)
T KOG2730 146 TFICGDFLDLASKLKADKIKYDCVFLSPPWGGPSYLRAD 184 (263)
T ss_pred EEEECHHHHHHHHHHHHHHEEEEEECCCCCCCCCHHHHH
T ss_conf 888330999999886410104566169999996313320
No 139
>PRK04457 spermidine synthase; Provisional
Probab=96.28 E-value=0.071 Score=32.46 Aligned_cols=138 Identities=16% Similarity=0.103 Sum_probs=94.3
Q ss_pred CCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHCCCCEEHHHHCCHHHHHHHHHHHHHC-CCCCCEEEECC--CCCCCCC
Q ss_conf 54211236666625860134688279999998616881005524989999999998750-28860882155--4344572
Q gi|254780634|r 221 QIVSNLTAITNSSQILDFCAGGGGKTLALSMLLNNKGQIHAWDNNKSRMAPIVARIKRA-GIHNVQLHSSW--ESLRNLQ 297 (429)
Q Consensus 221 ql~~~~l~~~~g~~vLD~CAapGGKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~-g~~~v~~~~~~--~~~~~~~ 297 (429)
|+...++.|.| .+||-+.-|.|+=+-.+..... ..+|+++|+++.=+...++-+.=- .-...++...| .......
T Consensus 57 Mm~~LLf~p~P-k~vl~iGLGgGsl~k~~~~~~P-~~~i~~VEIdp~Vi~vAr~~F~lP~dd~Rl~V~~~Dg~~fv~~~~ 134 (262)
T PRK04457 57 MMGFLLFNPRP-QHILQIGLGGGSFAKFIDTYLP-DTRQTAVEINPQVIAVARNHFELPFEDEKFEIIEADGAEYIKVFP 134 (262)
T ss_pred HHHHHHCCCCC-CEEEEEECCHHHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHCCCCCCCCCEEEEECCHHHHHHHCC
T ss_conf 99998658997-8699992570199999998398-675899987889999999865799999726999553899985486
Q ss_pred CCCCEEEECCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHCHHHHHHHHHHC
Q ss_conf 32467896275445044444223667249678999999878999999996089838999775888242999899999857
Q gi|254780634|r 298 EHFTTVLVDAPCSGTGTWRRRPDIKWRLSQKNLIERTEEQKKILEESAQFVRPEGYLVYITCSILPEENIQQINYFLSKN 377 (429)
Q Consensus 298 ~~fd~vl~DaPCSg~G~~rr~Pe~~w~~~~~~~~~~~~lQ~~iL~~a~~~lk~gG~lvYsTCS~~~~Ene~vv~~fL~~~ 377 (429)
++||.|++|+- .+.|. |+ .-.+.+-++.+...|+|||.||==+.+-.+. .+..++.+....
T Consensus 135 ~~~DvI~vD~f-d~~g~----~~-------------~L~t~~Fy~~c~~~L~~~Gvlv~Nl~~~~~~-~~~~l~~i~~~F 195 (262)
T PRK04457 135 ASTDVILVDGF-DGEQI----VD-------------ALVTQPFFRDCRNALSSDGVFVTNLWSGDKR-YQRYIERLLSVF 195 (262)
T ss_pred CCCCEEEEECC-CCCCC----CC-------------CCCCHHHHHHHHHHCCCCCEEEEECCCCCCC-HHHHHHHHHHHH
T ss_conf 77788999688-98888----60-------------0082999999998649893999986889986-599999999972
Q ss_pred CC
Q ss_conf 99
Q gi|254780634|r 378 PH 379 (429)
Q Consensus 378 ~~ 379 (429)
.+
T Consensus 196 ~~ 197 (262)
T PRK04457 196 EG 197 (262)
T ss_pred CC
T ss_conf 87
No 140
>KOG1596 consensus
Probab=96.25 E-value=0.044 Score=33.92 Aligned_cols=122 Identities=14% Similarity=0.126 Sum_probs=85.0
Q ss_pred CCCCCCCEEEECCCCCCHHHHHHHHHHCCCCEEHHHHCCHHHHHHHHHHHH-HCCCCCCEEEECCCCCC----CCCCCCC
Q ss_conf 366666258601346882799999986168810055249899999999987-50288608821554344----5723246
Q gi|254780634|r 227 TAITNSSQILDFCAGGGGKTLALSMLLNNKGQIHAWDNNKSRMAPIVARIK-RAGIHNVQLHSSWESLR----NLQEHFT 301 (429)
Q Consensus 227 l~~~~g~~vLD~CAapGGKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~-r~g~~~v~~~~~~~~~~----~~~~~fd 301 (429)
+-.+||.+||=+-||.|.--.|+++.....|.|+|++.+..-=+.|..-++ |.. .|-+.. |+..+ -+-+-.|
T Consensus 152 ihikpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAkkRtN--iiPIiE-DArhP~KYRmlVgmVD 228 (317)
T KOG1596 152 IHIKPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAKKRTN--IIPIIE-DARHPAKYRMLVGMVD 228 (317)
T ss_pred EEECCCCEEEEEECCCCCEEEHHHCCCCCCCEEEEEEECCCCHHHHHHHHHCCCC--CEEEEE-CCCCCHHEEEEEEEEE
T ss_conf 2535886699963367843330000307774399998435532889987642687--002450-4778500356610577
Q ss_pred EEEECCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEE---EECCCCHHHCHHHHHHHHH
Q ss_conf 7896275445044444223667249678999999878999999996089838999---7758882429998999998
Q gi|254780634|r 302 TVLVDAPCSGTGTWRRRPDIKWRLSQKNLIERTEEQKKILEESAQFVRPEGYLVY---ITCSILPEENIQQINYFLS 375 (429)
Q Consensus 302 ~vl~DaPCSg~G~~rr~Pe~~w~~~~~~~~~~~~lQ~~iL~~a~~~lk~gG~lvY---sTCS~~~~Ene~vv~~fL~ 375 (429)
.|+.|+|-+ | .. +-+..+|..+||+||-.|- +.|+=....+|.|-+.=.+
T Consensus 229 vIFaDvaqp---------d---------q~------RivaLNA~~FLk~gGhfvisikancidstv~ae~vFa~Ev~ 281 (317)
T KOG1596 229 VIFADVAQP---------D---------QA------RIVALNAQYFLKNGGHFVISIKANCIDSTVFAEAVFAAEVK 281 (317)
T ss_pred EEECCCCCC---------H---------HH------HHHHHHHHHHHCCCCEEEEEEECCCCCCCCCHHHHHHHHHH
T ss_conf 896268970---------3---------44------54533466650268718999854654444547888999999
No 141
>TIGR00537 hemK_rel_arch methylase, putative; InterPro: IPR004557 These proteins exhibit homology to the Saccharomyces cerevisiae (yeast) ORF YDR140w (FYV9). No known function has been described for this yeast ORF though the null mutant is viable and exhibits K1 killer toxin hypersensitivity. Members of this entry are weakly related to the yeast ORF YNL063w which is a putative S-adenosyl-methionine-dependent methyltransferase . Members of this entry are found in archaeal, bacterial and eukaryotic lineages.; GO: 0008168 methyltransferase activity.
Probab=96.25 E-value=0.021 Score=36.09 Aligned_cols=148 Identities=15% Similarity=0.231 Sum_probs=97.5
Q ss_pred CCCCCCCCCCCCE-EEECCCCCCHHHHHHHHHHCCCCE--EHHHHCCHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCC
Q ss_conf 4211236666625-860134688279999998616881--0055249899999999987502886088215543445723
Q gi|254780634|r 222 IVSNLTAITNSSQ-ILDFCAGGGGKTLALSMLLNNKGQ--IHAWDNNKSRMAPIVARIKRAGIHNVQLHSSWESLRNLQE 298 (429)
Q Consensus 222 l~~~~l~~~~g~~-vLD~CAapGGKt~~la~~~~~~g~--i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~~~~~~~~~~ 298 (429)
|....|....++. ||...+|-|== |.++..+|. |+++|++|-=++.+++|+.=.|. ++.+...|.. .+..+
T Consensus 11 LL~~nL~~~k~ddeVlEiG~GtGlv----air~~~Kg~k~i~~tDinP~Avk~~~~NA~~N~~-~l~v~~~Dlf-~~v~g 84 (183)
T TIGR00537 11 LLEANLRELKPDDEVLEIGAGTGLV----AIRLKEKGKKKILTTDINPFAVKLLRENAKLNNV-ELDVLETDLF-EGVRG 84 (183)
T ss_pred HHHHHHHHHCCCCEEEEEECCHHHH----HHHHHCCCCCEEEEEECCHHHHHHHHHCCHHCCC-CEEEEECCCC-CCCCC
T ss_conf 9999867516995289971680489----9998515882078863687999987731000266-4047611135-78555
Q ss_pred -CCCEEEECCCC---CCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHCHHHHHHHH
Q ss_conf -24678962754---45044444223667249678999999878999999996089838999775888242999899999
Q gi|254780634|r 299 -HFTTVLVDAPC---SGTGTWRRRPDIKWRLSQKNLIERTEEQKKILEESAQFVRPEGYLVYITCSILPEENIQQINYFL 374 (429)
Q Consensus 299 -~fd~vl~DaPC---Sg~G~~rr~Pe~~w~~~~~~~~~~~~lQ~~iL~~a~~~lk~gG~lvYsTCS~~~~Ene~vv~~fL 374 (429)
+||.||=-.|- |+.-...--=|.-|.=.+.-. .+=.+-|++.-.+||+||+..-.--|++-++ ++++.+-
T Consensus 85 eKFdviLFNpPYlp~~~d~~~gd~Ld~A~dGGkdGr----~vidrFldelp~~lk~gGrv~l~~SSl~~e~--~~~~kl~ 158 (183)
T TIGR00537 85 EKFDVILFNPPYLPLEDDEKRGDYLDLAIDGGKDGR----KVIDRFLDELPEYLKEGGRVQLIQSSLSDEK--DTLDKLD 158 (183)
T ss_pred CCEEEEEECCCCCCCCCCCCCCCEEEEEECCCCCCH----HHHHHHHHHHHHHHCCCCEEEEEEECCCCCH--HHHHHHH
T ss_conf 510277307898888765234766443331787305----7888887656888705998999960668868--8998876
Q ss_pred HHCCCCEEE
Q ss_conf 857997994
Q gi|254780634|r 375 SKNPHFSID 383 (429)
Q Consensus 375 ~~~~~~~~~ 383 (429)
.. +|+..
T Consensus 159 ~~--GF~~e 165 (183)
T TIGR00537 159 EL--GFKVE 165 (183)
T ss_pred HC--CCCEE
T ss_conf 15--88479
No 142
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=96.25 E-value=0.064 Score=32.77 Aligned_cols=131 Identities=20% Similarity=0.267 Sum_probs=87.2
Q ss_pred CCCCCCCEEEECCCCCCHHHHHHHHHHCCCCEEHHHHCCHHHHHHHHHHHHHCCCCCCE-EEECCCCCC----CCCCCCC
Q ss_conf 36666625860134688279999998616881005524989999999998750288608-821554344----5723246
Q gi|254780634|r 227 TAITNSSQILDFCAGGGGKTLALSMLLNNKGQIHAWDNNKSRMAPIVARIKRAGIHNVQ-LHSSWESLR----NLQEHFT 301 (429)
Q Consensus 227 l~~~~g~~vLD~CAapGGKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~-~~~~~~~~~----~~~~~fd 301 (429)
+..++|++||=+.||.|+-..|+++..+ .|.|+|++.++.-...|..-+++- .|+- +. .|+..+ .+-+..|
T Consensus 72 ~pi~~g~~VLYLGAasGTTvSHVSDIv~-~G~iYaVEfs~R~~reLl~~a~~R--~Ni~PIL-~DA~~P~~Y~~~Ve~VD 147 (231)
T COG1889 72 FPIKEGSKVLYLGAASGTTVSHVSDIVG-EGRIYAVEFSPRPMRELLDVAEKR--PNIIPIL-EDARKPEKYRHLVEKVD 147 (231)
T ss_pred CCCCCCCEEEEEECCCCCCHHHHHHCCC-CCCEEEEEECCHHHHHHHHHHHHC--CCCEEEE-CCCCCCHHHHHHCCCCC
T ss_conf 7769998789950367985767776047-870899996444699999998747--8740020-13688377653124543
Q ss_pred EEEECCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-HHHHHHHCCCCEEEE--EECCCCHHHCHH-HHHHHHHH-
Q ss_conf 7896275445044444223667249678999999878999-999996089838999--775888242999-89999985-
Q gi|254780634|r 302 TVLVDAPCSGTGTWRRRPDIKWRLSQKNLIERTEEQKKIL-EESAQFVRPEGYLVY--ITCSILPEENIQ-QINYFLSK- 376 (429)
Q Consensus 302 ~vl~DaPCSg~G~~rr~Pe~~w~~~~~~~~~~~~lQ~~iL-~~a~~~lk~gG~lvY--sTCS~~~~Ene~-vv~~fL~~- 376 (429)
.|..|+- +| -|.+|+ .||-.+||+||+++- -.-|+..-+... |-+.-.++
T Consensus 148 viy~DVA-----------------Qp--------~Qa~I~~~Na~~FLk~~G~~~i~iKArSIdvT~dp~~vf~~ev~kL 202 (231)
T COG1889 148 VIYQDVA-----------------QP--------NQAEILADNAEFFLKKGGYVVIAIKARSIDVTADPEEVFKDEVEKL 202 (231)
T ss_pred EEEEECC-----------------CC--------HHHHHHHHHHHHHCCCCCEEEEEEEEECCCCCCCHHHHHHHHHHHH
T ss_conf 8998368-----------------81--------0789999889973216973999998512304589899999999999
Q ss_pred -CCCCEEEECC
Q ss_conf -7997994143
Q gi|254780634|r 377 -NPHFSIDSII 386 (429)
Q Consensus 377 -~~~~~~~~~~ 386 (429)
..+|++.+..
T Consensus 203 ~~~~f~i~e~~ 213 (231)
T COG1889 203 EEGGFEILEVV 213 (231)
T ss_pred HHCCCEEEEEE
T ss_conf 85695046776
No 143
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=96.24 E-value=0.021 Score=36.00 Aligned_cols=103 Identities=15% Similarity=0.258 Sum_probs=69.8
Q ss_pred CCCCCCCEEEECCCCCCHHHHHHHHHHCCCCEEHHHHCCHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCCEEEEC
Q ss_conf 36666625860134688279999998616881005524989999999998750288608821554344572324678962
Q gi|254780634|r 227 TAITNSSQILDFCAGGGGKTLALSMLLNNKGQIHAWDNNKSRMAPIVARIKRAGIHNVQLHSSWESLRNLQEHFTTVLVD 306 (429)
Q Consensus 227 l~~~~g~~vLD~CAapGGKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~~~~~~~~~~~fd~vl~D 306 (429)
+.+.+-.+|.|+.||||.-|-+|+++.. ...|+..|.|+.=+....+++- |..+...|...-.....+|.+..-
T Consensus 26 Vp~~~~~~v~DLGCGpGnsTelL~~RwP-~A~i~GiDsS~~Mla~Aa~rlp-----~~~f~~aDl~~w~p~~~~dllfaN 99 (257)
T COG4106 26 VPLERPRRVVDLGCGPGNSTELLARRWP-DAVITGIDSSPAMLAKAAQRLP-----DATFEEADLRTWKPEQPTDLLFAN 99 (257)
T ss_pred CCCCCCCEEEECCCCCCHHHHHHHHHCC-CCEEEECCCCHHHHHHHHHHCC-----CCCEECCCHHHCCCCCCCCHHHHH
T ss_conf 7866641034557788778899998688-8867604699999999997489-----973210527544998763303344
Q ss_pred CCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 754450444442236672496789999998789999999960898389997
Q gi|254780634|r 307 APCSGTGTWRRRPDIKWRLSQKNLIERTEEQKKILEESAQFVRPEGYLVYI 357 (429)
Q Consensus 307 aPCSg~G~~rr~Pe~~w~~~~~~~~~~~~lQ~~iL~~a~~~lk~gG~lvYs 357 (429)
| + .-|- |+. -++|.+-+..|.|||.|.--
T Consensus 100 A------v------lqWl--pdH--------~~ll~rL~~~L~Pgg~LAVQ 128 (257)
T COG4106 100 A------V------LQWL--PDH--------PELLPRLVSQLAPGGVLAVQ 128 (257)
T ss_pred H------H------HHHC--CCC--------HHHHHHHHHHHCCCCEEEEE
T ss_conf 3------6------6443--640--------89999999850888569997
No 144
>pfam12147 Hydrolase_5 Putative lysophospholipase. This domain is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with pfam00561. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins.
Probab=96.19 E-value=0.12 Score=30.94 Aligned_cols=129 Identities=25% Similarity=0.298 Sum_probs=89.7
Q ss_pred CCCCEEEECCCCCCHHHHHHHHHHCC-CCEEHHHHCCHHHHHHHHHHHHHCCCCCC-EEEECCCC----CCCCCCCCCEE
Q ss_conf 66625860134688279999998616-88100552498999999999875028860-88215543----44572324678
Q gi|254780634|r 230 TNSSQILDFCAGGGGKTLALSMLLNN-KGQIHAWDNNKSRMAPIVARIKRAGIHNV-QLHSSWES----LRNLQEHFTTV 303 (429)
Q Consensus 230 ~~g~~vLD~CAapGGKt~~la~~~~~-~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v-~~~~~~~~----~~~~~~~fd~v 303 (429)
...-+|||..||+|-=-+-..+.... .-.|.-.|.++--++.-++-++..|+.+| .+...|+. +.......+.+
T Consensus 134 g~~v~ilDIAaG~GRYvldal~~~~~~~~~illRDys~~NV~~G~~li~ergl~~ia~Fe~gdAFd~~~la~l~p~P~l~ 213 (311)
T pfam12147 134 GRPVRILDIAAGHGRYVLDALAKAPQRPDSILLRDYSPLNVEQGRALIAERGLEDIARFEQGDAFDPASLAALTPAPTLA 213 (311)
T ss_pred CCCEEEEEECCCCCHHHHHHHHHCCCCCCEEEECCCCHHHHHHHHHHHHHCCCCHHEEEEECCCCCHHHHHCCCCCCCEE
T ss_conf 99569998516861629999985798874588514888779999999997496200067405767976763269999789
Q ss_pred EECCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHCHHHHHHHHHHCCC
Q ss_conf 9627544504444422366724967899999987899999999608983899977588824299989999985799
Q gi|254780634|r 304 LVDAPCSGTGTWRRRPDIKWRLSQKNLIERTEEQKKILEESAQFVRPEGYLVYITCSILPEENIQQINYFLSKNPH 379 (429)
Q Consensus 304 l~DaPCSg~G~~rr~Pe~~w~~~~~~~~~~~~lQ~~iL~~a~~~lk~gG~lvYsTCS~~~~Ene~vv~~fL~~~~~ 379 (429)
+| ||+ . .+-|.+ .+=..=|.-.+..+.|||+|||..=.-.|. -+.|...|..|.+
T Consensus 214 IV----SGL--y--------ELF~dN-----~lv~~sl~Gl~~ai~~gGyLIYTgQPWHPQ--Le~IAr~LtSHr~ 268 (311)
T pfam12147 214 IV----SGL--Y--------ELFPDN-----DLVRRSLAGLAQAVEPGGYLIYTGQPWHPQ--LEMIARALTSHRG 268 (311)
T ss_pred EE----ECH--H--------HHCCCH-----HHHHHHHHHHHHHCCCCCEEEECCCCCCHH--HHHHHHHHHCCCC
T ss_conf 97----012--6--------636872-----999999999997508997899829988667--9999999725668
No 145
>pfam08003 Methyltransf_9 Protein of unknown function (DUF1698). This family contains many hypothetical proteins. It also includes two putative methyltransferase proteins.
Probab=96.18 E-value=0.12 Score=30.91 Aligned_cols=203 Identities=19% Similarity=0.159 Sum_probs=106.8
Q ss_pred HCCCHHHHHHHHHHCC--HHHHHHHHHHCCCCCCCCCCCCC-------CCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCC
Q ss_conf 0899889999998574--48999999862898611124778-------89989999989871887545475431134566
Q gi|254780634|r 124 GNIPQWLQSSFQSYFK--DTWLKEAKSLSMRAPLDLRTNTL-------KVNRCKLFKNLCHYGVHHSSISRFGLRIPATK 194 (429)
Q Consensus 124 ~s~P~WL~~~~~~~~g--e~~~~~l~a~~~~~pl~iRvN~~-------k~~~~~~~~~L~~~gi~~~~~~~~~~~l~~~~ 194 (429)
..+|.+|-+...+..| ..|.+.+.++-.-.|..+-.+.. ..+.+ -.+.|...=-...||-..++.+....
T Consensus 15 ~~lp~ql~~~~~~~hGd~~~W~~al~~LP~~~~~~~~l~~~v~i~~~~~ls~~-~~~~l~~~L~~l~PWRKGPF~l~gi~ 93 (315)
T pfam08003 15 NTLPAQLQTWQEQEHGDFKRWRKALEKLPELKPDSIDLKNSVTAGTEEPLSHG-EQKKLEQLLRALMPWRKGPFHLHGVH 93 (315)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCEEECCCCEEECCCCCCCHH-HHHHHHHHHHHCCCCCCCCEEECCCC
T ss_conf 98799999887621799899999998657899776633696585578889989-99999999984299777981206800
Q ss_pred CCCCCCCHHCCHHHCCCEEEEECCCCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHCCCCEEHHHHCCHHHHHHHHH
Q ss_conf 54446101109631265489841556542112366666258601346882799999986168810055249899999999
Q gi|254780634|r 195 GKSRLPNVMNDITFQRGWFEIQDEGSQIVSNLTAITNSSQILDFCAGGGGKTLALSMLLNNKGQIHAWDNNKSRMAPIVA 274 (429)
Q Consensus 195 ~~~~~~~~~~~~~f~~G~~~VQD~aSql~~~~l~~~~g~~vLD~CAapGGKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~ 274 (429)
--++ ++. |--=..+...+.+-.|.+|||..||-|=-..-|+. .+.-.|+..|.+..=+-....
T Consensus 94 IDtE---------WrS------d~KW~Rl~~~i~~L~gk~VlDVGcgNGYy~~RMlg--~ga~~viGiDPs~lf~~QF~a 156 (315)
T pfam08003 94 IDTE---------WRS------DWKWDRVLPHLSPLKGRTILDVGCGNGYHMWRMLG--EGAALVVGIDPSELFLCQFEA 156 (315)
T ss_pred CCCC---------CCC------CCCHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHH--CCCCEEEEECCHHHHHHHHHH
T ss_conf 4421---------004------22299887342242689887517786499998622--399879988981999999999
Q ss_pred HHHH-CCCCC-CEEEE-CCCCCCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 9875-02886-08821-554344572324678962754450444442236672496789999998789999999960898
Q gi|254780634|r 275 RIKR-AGIHN-VQLHS-SWESLRNLQEHFTTVLVDAPCSGTGTWRRRPDIKWRLSQKNLIERTEEQKKILEESAQFVRPE 351 (429)
Q Consensus 275 ~~~r-~g~~~-v~~~~-~~~~~~~~~~~fd~vl~DaPCSg~G~~rr~Pe~~w~~~~~~~~~~~~lQ~~iL~~a~~~lk~g 351 (429)
+++ +|-.+ +.+.. ....++.. ..||.|+. +|++-++ ++|-+ .|..--+.|+||
T Consensus 157 -i~~~~~~~~~~~~lPlg~E~lp~~-~~FDtVFs------MGVLYHr------rsP~~----------hL~~Lk~~L~~g 212 (315)
T pfam08003 157 -VRKLLGNDQRAHLLPLGIEQLPAL-EAFDTVFS------MGVLYHR------RSPLD----------HLLQLKDQLVKG 212 (315)
T ss_pred -HHHHCCCCCCEEEECCCHHHCCCC-CCCCEEEE------EEEEECC------CCHHH----------HHHHHHHHCCCC
T ss_conf -999708987568853676548663-42155776------5444326------89899----------999999852879
Q ss_pred CEEEEEECCCCHHHCHH
Q ss_conf 38999775888242999
Q gi|254780634|r 352 GYLVYITCSILPEENIQ 368 (429)
Q Consensus 352 G~lvYsTCS~~~~Ene~ 368 (429)
|.||--|=-+.-+|+..
T Consensus 213 GeLvLETlvi~gd~~~~ 229 (315)
T pfam08003 213 GELVLETLVIEGDENTV 229 (315)
T ss_pred CEEEEEEEEECCCCCEE
T ss_conf 78999987765988725
No 146
>PRK06202 hypothetical protein; Provisional
Probab=96.12 E-value=0.018 Score=36.47 Aligned_cols=75 Identities=23% Similarity=0.310 Sum_probs=56.3
Q ss_pred CCCCCEEEECCCCCCHHHHHHHHHHCCCC---EEHHHHCCHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCCEEEE
Q ss_conf 66662586013468827999999861688---100552498999999999875028860882155434457232467896
Q gi|254780634|r 229 ITNSSQILDFCAGGGGKTLALSMLLNNKG---QIHAWDNNKSRMAPIVARIKRAGIHNVQLHSSWESLRNLQEHFTTVLV 305 (429)
Q Consensus 229 ~~~g~~vLD~CAapGGKt~~la~~~~~~g---~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~~~~~~~~~~~fd~vl~ 305 (429)
+...-+|||+.||.|.=+..||......| .|+++|+++.=+...+++.+..|+. ++....+.. ....+.||.|++
T Consensus 59 ~~r~~~VLDlGcG~Gdl~~~lar~a~~~g~~l~v~GiD~~~~ai~~Ar~~a~~~~~~-~~~~~~d~l-~~~~~~~DvV~~ 136 (233)
T PRK06202 59 PDRPLTVLDLGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAIRFARANARRRGVT-FRFAVSDEL-VAEGERFDVVYS 136 (233)
T ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHCCCCCCC-EEEEEHHHH-CCCCCCCCEEEH
T ss_conf 788728998347875799999999975599638999779889999998734036983-699734320-245788757603
No 147
>KOG2671 consensus
Probab=96.08 E-value=0.014 Score=37.28 Aligned_cols=158 Identities=16% Similarity=0.132 Sum_probs=98.2
Q ss_pred CCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHCCCCEEHHHHCCHHHHH-------HHHHHHHHCCCCC--CEEEECC
Q ss_conf 654211236666625860134688279999998616881005524989999-------9999987502886--0882155
Q gi|254780634|r 220 SQIVSNLTAITNSSQILDFCAGGGGKTLALSMLLNNKGQIHAWDNNKSRMA-------PIVARIKRAGIHN--VQLHSSW 290 (429)
Q Consensus 220 Sql~~~~l~~~~g~~vLD~CAapGGKt~~la~~~~~~g~i~A~D~~~~Rl~-------~l~~~~~r~g~~~--v~~~~~~ 290 (429)
|-+-+....++||+-|+|-..|-||=- +++.-- .+-++..||+..-+. .++.|++..|... ..+...|
T Consensus 197 Sli~AN~Amv~pGdivyDPFVGTGslL--vsaa~F-Ga~viGtDIDyr~vragrg~~~si~aNFkQYg~~~~fldvl~~D 273 (421)
T KOG2671 197 SLIMANQAMVKPGDIVYDPFVGTGSLL--VSAAHF-GAYVIGTDIDYRTVRAGRGEDESIKANFKQYGSSSQFLDVLTAD 273 (421)
T ss_pred HHHHHHHHCCCCCCEEECCCCCCCCEE--EEHHHH-CCEEECCCCCHHEEECCCCCCCCHHHHHHHHCCCCHHHHEEEEC
T ss_conf 888755530679988744765667426--662230-63564124531201134577742667687747753203204510
Q ss_pred CCCCCC--CCCCCEEEECCCCC---CCHHH-HHHHHH---HH-H---CCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 434457--23246789627544---50444-442236---67-2---496789999998789999999960898389997
Q gi|254780634|r 291 ESLRNL--QEHFTTVLVDAPCS---GTGTW-RRRPDI---KW-R---LSQKNLIERTEEQKKILEESAQFVRPEGYLVYI 357 (429)
Q Consensus 291 ~~~~~~--~~~fd~vl~DaPCS---g~G~~-rr~Pe~---~w-~---~~~~~~~~~~~lQ~~iL~~a~~~lk~gG~lvYs 357 (429)
.+-+++ ...||.|++|.|-- |.-.. .|.+.- +. + .--...-.+..+=.++|.-+++.|.-||+||.=
T Consensus 274 ~sn~~~rsn~~fDaIvcDPPYGVRe~~rk~~~k~~~r~~~~~~~~~h~p~~~~ysl~~~v~dll~fss~~L~~ggrlv~w 353 (421)
T KOG2671 274 FSNPPLRSNLKFDAIVCDPPYGVREGARKTGKKKSVRTTEESSRGDHYPSTEQYSLSSLVYDLLCFSSRRLVDGGRLVFW 353 (421)
T ss_pred CCCCCHHHCCEEEEEEECCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEE
T ss_conf 56763010323337872798114566665414576557521243355776446679999750887637663028558983
Q ss_pred ECCCCHHHCHHHHHHHHHHCCCCEEEE
Q ss_conf 758882429998999998579979941
Q gi|254780634|r 358 TCSILPEENIQQINYFLSKNPHFSIDS 384 (429)
Q Consensus 358 TCS~~~~Ene~vv~~fL~~~~~~~~~~ 384 (429)
-= --+|+..+.-+-.|+.+++.-
T Consensus 354 ~p----~~~e~~~~~~~P~h~~lsl~~ 376 (421)
T KOG2671 354 LP----TITEEYGEDDIPSHPYLSLIY 376 (421)
T ss_pred CC----CHHHCCCCCCCCCCCCHHHHH
T ss_conf 47----412125743477773310020
No 148
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=96.03 E-value=0.035 Score=34.58 Aligned_cols=100 Identities=16% Similarity=0.192 Sum_probs=64.1
Q ss_pred CCCCCCCEEEECCCCCCHHHHHHHHHHCCCCEEHHHHCCHHHHHHHHHHHHHCCCCCCEEEECC-CC---CCCC-CC-CC
Q ss_conf 3666662586013468827999999861688100552498999999999875028860882155-43---4457-23-24
Q gi|254780634|r 227 TAITNSSQILDFCAGGGGKTLALSMLLNNKGQIHAWDNNKSRMAPIVARIKRAGIHNVQLHSSW-ES---LRNL-QE-HF 300 (429)
Q Consensus 227 l~~~~g~~vLD~CAapGGKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~~-~~---~~~~-~~-~f 300 (429)
..+++|++||=.-|||.|=......+..+..+|++.|.+++|++..+ ++|...+ +.... .. ...+ .+ .+
T Consensus 172 ~~~~~g~~VlV~GaG~iGl~a~~~ak~~Ga~~Vi~~d~~~~rl~~A~----~lGa~~~-i~~~~~~~~~~v~~~t~g~G~ 246 (358)
T TIGR03451 172 GGVKRGDSVAVIGCGGVGDAAIAGAALAGASKIIAVDIDDRKLEWAR----EFGATHT-VNSSGTDPVEAIRALTGGFGA 246 (358)
T ss_pred CCCCCCCEEEEECCCHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHH----HCCCEEE-ECCCCCCHHHHHHHHHCCCCC
T ss_conf 07999988999673769999999999839918999919889999999----6599099-739987889999998589887
Q ss_pred CEEEECCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEC
Q ss_conf 67896275445044444223667249678999999878999999996089838999775
Q gi|254780634|r 301 TTVLVDAPCSGTGTWRRRPDIKWRLSQKNLIERTEEQKKILEESAQFVRPEGYLVYITC 359 (429)
Q Consensus 301 d~vl~DaPCSg~G~~rr~Pe~~w~~~~~~~~~~~~lQ~~iL~~a~~~lk~gG~lvYsTC 359 (429)
|.|+ -|+|.. +.++.+..++++||++|..-+
T Consensus 247 Dvvi---e~~G~~-------------------------~~~~~al~~~~~gG~iv~~G~ 277 (358)
T TIGR03451 247 DVVI---DAVGRP-------------------------ETYKQAFYARDLAGTVVLVGV 277 (358)
T ss_pred CEEE---ECCCCH-------------------------HHHHHHHHHHCCCCEEEEEEC
T ss_conf 4999---999998-------------------------999999997627969999922
No 149
>TIGR00536 hemK_fam methyltransferase, HemK family; InterPro: IPR004556 The gene hemK from Escherichia coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase . Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity . Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both Escherichia coli and Haemophilus influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.; GO: 0008276 protein methyltransferase activity, 0006479 protein amino acid methylation.
Probab=95.94 E-value=0.05 Score=33.50 Aligned_cols=142 Identities=18% Similarity=0.189 Sum_probs=101.0
Q ss_pred CCCCC-CEEEECCCCCCHHHHHHHHHHC--CCCEEHHHHCCHHHHHHHHHHHHHCCCCC-CEEEECCCCC--CCCCC-CC
Q ss_conf 66666-2586013468827999999861--68810055249899999999987502886-0882155434--45723-24
Q gi|254780634|r 228 AITNS-SQILDFCAGGGGKTLALSMLLN--NKGQIHAWDNNKSRMAPIVARIKRAGIHN-VQLHSSWESL--RNLQE-HF 300 (429)
Q Consensus 228 ~~~~g-~~vLD~CAapGGKt~~la~~~~--~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~-v~~~~~~~~~--~~~~~-~f 300 (429)
.-.+- ..++|+|.|.|.-++.++.... + ..+.+.|++..-+.....|..+.++.. +.....+... ..... ++
T Consensus 122 ~~~~~p~~~~d~~~g~g~~~~~~~~~~~pc~-~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 200 (311)
T TIGR00536 122 SQPPLPLHILDLGTGSGCIALALAYEFPPCN-AEVIAVDLSPDALALAEENAEKLGLEGRVELLQSDLLEPLPGLGGPKL 200 (311)
T ss_pred CCCCCCCHHHHCCCCCHHHHHHHHHCCCCCC-CEEEEECCCHHHHHHHHHHHHHHHHHCCCEEEHHHHHHHHHHCCCCCE
T ss_conf 1477650111014563156665543046666-226641122367888887677643201200101124443320366522
Q ss_pred CEEEECCCCCCCHHHHHH-HHHHHHC---CHHH-HHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHCHHHH
Q ss_conf 678962754450444442-2366724---9678-99999987899999999608983899977588824299989
Q gi|254780634|r 301 TTVLVDAPCSGTGTWRRR-PDIKWRL---SQKN-LIERTEEQKKILEESAQFVRPEGYLVYITCSILPEENIQQI 370 (429)
Q Consensus 301 d~vl~DaPCSg~G~~rr~-Pe~~w~~---~~~~-~~~~~~lQ~~iL~~a~~~lk~gG~lvYsTCS~~~~Ene~vv 370 (429)
|.+.-..|--..--+... |.....- .... -.+=...-+.++..+...+.++|.+++..-.-...+-.+..
T Consensus 201 ~~~~~~ppy~~~~~~~~~~~~~~~~~p~~~l~~~g~~g~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~ 275 (311)
T TIGR00536 201 DLLVSNPPYIDEEDLADLSPGVVLFEPLLALVGFGDDGLKILKRILELAPDYLKPGGFLLLEIGNWQLGLLKELL 275 (311)
T ss_pred EEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHH
T ss_conf 366458865441345553112343200345430474007899999875454305675589961622356778766
No 150
>PHA02056 putative methyltransferase
Probab=95.93 E-value=0.013 Score=37.47 Aligned_cols=129 Identities=14% Similarity=0.180 Sum_probs=75.3
Q ss_pred CCCCCCCEEEECCCCCCHHHHHHHHHHCCCCEEHHHHCCHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCCEEEEC
Q ss_conf 36666625860134688279999998616881005524989999999998750288608821554344572324678962
Q gi|254780634|r 227 TAITNSSQILDFCAGGGGKTLALSMLLNNKGQIHAWDNNKSRMAPIVARIKRAGIHNVQLHSSWESLRNLQEHFTTVLVD 306 (429)
Q Consensus 227 l~~~~g~~vLD~CAapGGKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~~~~~~~~~~~fd~vl~D 306 (429)
++.--+.+|+|+|||=|+=|.+|.++.... +|++++.++.=+..-++-+- .....+.|.......+.||.++-.
T Consensus 60 IDa~~tG~iiDLCAGIG~LSy~~~~r~kp~-~ivCVErN~~y~~vGkkilP-----eAtWI~~Dv~~~~~~~~FD~aIsN 133 (279)
T PHA02056 60 IDAHCTGKVLDLCAGIGRLSFCMLHRCKPE-KIVCVELNPEFARIGKRLLP-----EAEWITSDVFEFESNEKFDVVISN 133 (279)
T ss_pred EECCCCCEEEEECCCCCHHHHHHHHCCCCC-CEEEEEECHHHHHHHHHCCC-----CCEEEECCEECCCCCCCEEEEECC
T ss_conf 502578538882146123579998506886-35899408579886432076-----402773231303566620045338
Q ss_pred CCCCCCHHHHHHHHHHHHCCHHHH-------------------------HHHHHHH----HHHHHHHHHHHCCCCEEEEE
Q ss_conf 754450444442236672496789-------------------------9999987----89999999960898389997
Q gi|254780634|r 307 APCSGTGTWRRRPDIKWRLSQKNL-------------------------IERTEEQ----KKILEESAQFVRPEGYLVYI 357 (429)
Q Consensus 307 aPCSg~G~~rr~Pe~~w~~~~~~~-------------------------~~~~~lQ----~~iL~~a~~~lk~gG~lvYs 357 (429)
.|--..-+-+-+---++ +-.++ -.+...| ..-=..+.++++.-|...|.
T Consensus 134 PPFG~i~~~~sK~~~~y--tg~~FE~~Vi~~a~~~Ad~G~FIiPqmSA~F~YSG~~~y~~~~~s~k~~Kf~~qTGl~~~~ 211 (279)
T PHA02056 134 PPFGKINTTDTKDVFEY--TGGEFEFKVMTLGQKFADVGYFIVPSGSAGFAYSGRPYYDGTMKSNKYLKWSKQTGLVTYA 211 (279)
T ss_pred CCCCCCCCCCCCCCCCC--CCCCEEEEEEHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCEEECC
T ss_conf 99764333335788664--5761157732456676306349961466676757873336666642667678644747407
Q ss_pred ECCCCH
Q ss_conf 758882
Q gi|254780634|r 358 TCSILP 363 (429)
Q Consensus 358 TCS~~~ 363 (429)
-|-+..
T Consensus 212 gCGiDT 217 (279)
T PHA02056 212 GCGIDT 217 (279)
T ss_pred CCCCCC
T ss_conf 977440
No 151
>KOG3420 consensus
Probab=95.93 E-value=0.0093 Score=38.47 Aligned_cols=92 Identities=13% Similarity=0.232 Sum_probs=68.8
Q ss_pred CCCCCCCEEEECCCCCCHHHHHHHHHHCCCCEEHHHHCCHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCCEEEEC
Q ss_conf 36666625860134688279999998616881005524989999999998750288608821554344572324678962
Q gi|254780634|r 227 TAITNSSQILDFCAGGGGKTLALSMLLNNKGQIHAWDNNKSRMAPIVARIKRAGIHNVQLHSSWESLRNLQEHFTTVLVD 306 (429)
Q Consensus 227 l~~~~g~~vLD~CAapGGKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~~~~~~~~~~~fd~vl~D 306 (429)
.+--.|++++|+|+|-|-=+ ++..|...-.|+..|+++.-|+....|++.+.+..--+.+.-.......+.||.++.+
T Consensus 44 ygdiEgkkl~DLgcgcGmLs--~a~sm~~~e~vlGfDIdpeALEIf~rNaeEfEvqidlLqcdildle~~~g~fDtaviN 121 (185)
T KOG3420 44 YGDIEGKKLKDLGCGCGMLS--IAFSMPKNESVLGFDIDPEALEIFTRNAEEFEVQIDLLQCDILDLELKGGIFDTAVIN 121 (185)
T ss_pred HCCCCCCCHHHHCCCHHHHH--HHHHCCCCCEEEEEECCHHHHHHHHHCHHHHHHHHHEEEEECCCHHCCCCEEEEEEEC
T ss_conf 01204746225247611567--7750578733786405889999986166875233421222215511058767667866
Q ss_pred CCCCCCHHHHHHHHHHH
Q ss_conf 75445044444223667
Q gi|254780634|r 307 APCSGTGTWRRRPDIKW 323 (429)
Q Consensus 307 aPCSg~G~~rr~Pe~~w 323 (429)
.|- ||=.|+.|.+.
T Consensus 122 ppF---GTk~~~aDm~f 135 (185)
T KOG3420 122 PPF---GTKKKGADMEF 135 (185)
T ss_pred CCC---CCCCCCCCHHH
T ss_conf 898---76434433899
No 152
>PRK06922 hypothetical protein; Provisional
Probab=95.92 E-value=0.075 Score=32.31 Aligned_cols=133 Identities=15% Similarity=0.159 Sum_probs=82.0
Q ss_pred CCCCCCCCCEEEECCCCCCHHHHHHHHHHCCCCEEHHHHCCHHHHHHHHHHHHHCCCCCCEEEECCCC-C--CCCCCCCC
Q ss_conf 12366666258601346882799999986168810055249899999999987502886088215543-4--45723246
Q gi|254780634|r 225 NLTAITNSSQILDFCAGGGGKTLALSMLLNNKGQIHAWDNNKSRMAPIVARIKRAGIHNVQLHSSWES-L--RNLQEHFT 301 (429)
Q Consensus 225 ~~l~~~~g~~vLD~CAapGGKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~~~~-~--~~~~~~fd 301 (429)
..++--.|+.++|..||.|----.+.+...+ ..|+..|+|.+-++.|+++-.+-|- +.++..+|+. + ....++.|
T Consensus 414 iIldyi~G~~ivdiG~GGGVMldli~E~~p~-~~i~GIDiS~NVIe~L~kkK~~e~k-sW~V~~gDAL~l~d~f~~eSvd 491 (679)
T PRK06922 414 IILDYIKGDTIVDVGAGGGVMLDMIEEETED-KRIYGIDISENVIDTLKKKKQNEGR-SWNVIKGDAINLSSSFEKESVD 491 (679)
T ss_pred EEEECCCCCEEEEECCCCCHHHHHHHHHCCC-CCCEEEECCHHHHHHHHHHHHHCCC-CCEEECCCCCCCHHHCCCCCCC
T ss_conf 5420014767998669962148766765899-8614666608899999887775489-8423214303615434756664
Q ss_pred EEEECCCCCCCHHHHHHHHHHHHCCHHHH-HHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHCHHHHH
Q ss_conf 78962754450444442236672496789-99999878999999996089838999775888242999899
Q gi|254780634|r 302 TVLVDAPCSGTGTWRRRPDIKWRLSQKNL-IERTEEQKKILEESAQFVRPEGYLVYITCSILPEENIQQIN 371 (429)
Q Consensus 302 ~vl~DaPCSg~G~~rr~Pe~~w~~~~~~~-~~~~~lQ~~iL~~a~~~lk~gG~lvYsTCS~~~~Ene~vv~ 371 (429)
.|. ||+. + -|+ +.--|-+- .--...=.+.|.+|...|||||+++-----++ |+.+-.+
T Consensus 492 Tiv----~sSI--l---HEl-fSYie~dGkkfN~~vi~~~l~Saf~vLkpGGRiIIRDGImT--E~kd~~r 550 (679)
T PRK06922 492 TIV----YSSI--L---HEL-FSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRDGIMT--EDKRLMR 550 (679)
T ss_pred EEE----EHHH--H---HHH-HHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCC--CCHHHHH
T ss_conf 687----4277--8---888-86345667134799999999999987288864999457536--8887787
No 153
>pfam04989 CmcI Cephalosporin hydroxylase. Members of this family are about 220 amino acids long. The CmcI protein is presumed to represent the cephalosporin-7--hydroxylase. However this has not been experimentally verified.
Probab=95.91 E-value=0.064 Score=32.77 Aligned_cols=144 Identities=19% Similarity=0.226 Sum_probs=86.8
Q ss_pred EEECCCCCCCC-CCCCCCCCCEEEECCCCCCHHHHHHHHHHC---CCCEEHHHHCCHHHHHHHHHHHHHCCCCCCEEEEC
Q ss_conf 98415565421-123666662586013468827999999861---68810055249899999999987502886088215
Q gi|254780634|r 214 EIQDEGSQIVS-NLTAITNSSQILDFCAGGGGKTLALSMLLN---NKGQIHAWDNNKSRMAPIVARIKRAGIHNVQLHSS 289 (429)
Q Consensus 214 ~VQD~aSql~~-~~l~~~~g~~vLD~CAapGGKt~~la~~~~---~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~ 289 (429)
.+|.+.-+++- +++---..+.|.....|-||=++.+|++|. .+|+|+++|++-+...+-. ...+.+++...
T Consensus 14 iik~P~Dl~~~qeii~~~kPd~IIE~G~a~GGS~l~~A~~l~~~~~~~~VigiDi~i~~~~~~~-----i~~~~I~lieg 88 (202)
T pfam04989 14 IIKLPQDMVAYQELIWELKPDLIIETGIAHGGSALFFASMLELLGSDGKVLGIDIDIREHNRPA-----IEAPRITFIQG 88 (202)
T ss_pred CCCCHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCHHH-----HCCCCEEEEEC
T ss_conf 0249899999999999859998999616766289999999997389987999957644335435-----31687699976
Q ss_pred CCCCC-------CCCCCCC--EEEECCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECC
Q ss_conf 54344-------5723246--78962754450444442236672496789999998789999999960898389997758
Q gi|254780634|r 290 WESLR-------NLQEHFT--TVLVDAPCSGTGTWRRRPDIKWRLSQKNLIERTEEQKKILEESAQFVRPEGYLVYITCS 360 (429)
Q Consensus 290 ~~~~~-------~~~~~fd--~vl~DaPCSg~G~~rr~Pe~~w~~~~~~~~~~~~lQ~~iL~~a~~~lk~gG~lvYsTCS 360 (429)
+.... ......+ .|++|+.+|-..|+ +.|+.-+++|++|.++|=----
T Consensus 89 ~s~d~~~~~~v~~~~~~~~~vlVilDs~Ht~~hVl-----------------------~eL~~y~~lv~~GsY~IVeDTi 145 (202)
T pfam04989 89 SSTDPEIIEQVRSLAEPPHPVLVILDSDHTHEHVL-----------------------AELRAYAPLVSEGSYLVVEDTI 145 (202)
T ss_pred CCCCHHHHHHHHHHHCCCCCEEEEECCCCCHHHHH-----------------------HHHHHHHHHCCCCCEEEEECCC
T ss_conf 85678899889998537985899964886568899-----------------------9999875215768899995762
Q ss_pred CCH--H-----------HC-HHHHHHHHHHCCCCEEEEC
Q ss_conf 882--4-----------29-9989999985799799414
Q gi|254780634|r 361 ILP--E-----------EN-IQQINYFLSKNPHFSIDSI 385 (429)
Q Consensus 361 ~~~--~-----------En-e~vv~~fL~~~~~~~~~~~ 385 (429)
+.- + -| -.-|+.||++|++|++...
T Consensus 146 i~~~p~~~~~~r~w~~gnnP~~Av~eFL~~~~~F~iD~~ 184 (202)
T pfam04989 146 IEDLPESPFPDRPWGKGNNPKTAVTEFLAEHPEFEIDTA 184 (202)
T ss_pred HHHCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEECCC
T ss_conf 431755667888687898979999999987899386532
No 154
>PRK10083 putative dehydrogenase; Provisional
Probab=95.88 E-value=0.037 Score=34.38 Aligned_cols=104 Identities=22% Similarity=0.212 Sum_probs=63.7
Q ss_pred CCCCCCCCCCEEEECCCCCCHH-HHHHHHHHCCCCEEHHHHCCHHHHHHHHHHHHHCCCCCCEEEECCCCCC----CCCC
Q ss_conf 1123666662586013468827-9999998616881005524989999999998750288608821554344----5723
Q gi|254780634|r 224 SNLTAITNSSQILDFCAGGGGK-TLALSMLLNNKGQIHAWDNNKSRMAPIVARIKRAGIHNVQLHSSWESLR----NLQE 298 (429)
Q Consensus 224 ~~~l~~~~g~~vLD~CAapGGK-t~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~~~~~~----~~~~ 298 (429)
....++++|++|+=.-+||-|= +.+++..+.+...|++.|.++.|++..+ ++|...+ +........ ....
T Consensus 153 ~~~~~~~~g~~VlV~G~G~iGl~~~~~~~~~~ga~~Vi~~d~~~~rl~~A~----~~GAd~v-i~~~~~~~~~~~~~~G~ 227 (339)
T PRK10083 153 TGRTGPTEQDVALIYGAGPVGLTIVQVLKGVYGVKNVIVADRIDERLALAK----ESGADWV-INNAQESLAEALAEKGV 227 (339)
T ss_pred HHHHCCCCCCEEEEECCCHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHH----HCCCCEE-ECCCCCCHHHHHHHCCC
T ss_conf 986189999889995876599999999998569978999379899999999----7199899-84887669999985399
Q ss_pred CCCEEEECCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECC
Q ss_conf 24678962754450444442236672496789999998789999999960898389997758
Q gi|254780634|r 299 HFTTVLVDAPCSGTGTWRRRPDIKWRLSQKNLIERTEEQKKILEESAQFVRPEGYLVYITCS 360 (429)
Q Consensus 299 ~fd~vl~DaPCSg~G~~rr~Pe~~w~~~~~~~~~~~~lQ~~iL~~a~~~lk~gG~lvYsTCS 360 (429)
.+|. .+| |+|.. ..++.+.+++++||+++..-.+
T Consensus 228 ~~dv-vid--~~g~~-------------------------~~~~~a~~~~~~gG~iv~~G~~ 261 (339)
T PRK10083 228 KPTL-IFD--AACHP-------------------------SILEEAVTLASPAARIVLMGFS 261 (339)
T ss_pred CCCE-EEE--CCCCH-------------------------HHHHHHHHHHHCCEEEEEEECC
T ss_conf 9619-996--66688-------------------------9999999985188099999258
No 155
>pfam10354 DUF2431 Domain of unknown function (DUF2431). This is the N-terminal domain of a family of proteins found from plants to humans. The function is not known.
Probab=95.79 E-value=0.18 Score=29.76 Aligned_cols=79 Identities=15% Similarity=0.294 Sum_probs=62.2
Q ss_pred CCCCCEEEECCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHCHHHHHHHHHH
Q ss_conf 23246789627544504444422366724967899999987899999999608983899977588824299989999985
Q gi|254780634|r 297 QEHFTTVLVDAPCSGTGTWRRRPDIKWRLSQKNLIERTEEQKKILEESAQFVRPEGYLVYITCSILPEENIQQINYFLSK 376 (429)
Q Consensus 297 ~~~fd~vl~DaPCSg~G~~rr~Pe~~w~~~~~~~~~~~~lQ~~iL~~a~~~lk~gG~lvYsTCS~~~~Ene~vv~~fL~~ 376 (429)
..+||+|+--=|++|-+. +.....+.....|=...+.+|.++|+++|.+.=+-|+-.|- |..+|+ -|+.
T Consensus 73 ~~~fD~IiFNFPH~G~~~---------~~~~~~i~~nr~Ll~~Ff~sa~~~l~~~G~i~vTl~~g~py-~~W~i~-~lA~ 141 (166)
T pfam10354 73 KNRFDRIIFNFPHAGGKI---------KDSDRNIRLNRELLRGFFKNASELLKPGGEIHVTLKDGEPY-NSWNIE-ALAA 141 (166)
T ss_pred CCCCCEEEECCCCCCCCC---------CCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCC-CEECHH-HHHH
T ss_conf 783578998799888877---------41255589999999999999999827998999995389998-730388-9997
Q ss_pred CCCCEEEECC
Q ss_conf 7997994143
Q gi|254780634|r 377 NPHFSIDSII 386 (429)
Q Consensus 377 ~~~~~~~~~~ 386 (429)
+.++.+....
T Consensus 142 ~~gl~l~~~~ 151 (166)
T pfam10354 142 EAGLKLEESV 151 (166)
T ss_pred HCCCEEEEEE
T ss_conf 4795898875
No 156
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=95.77 E-value=0.022 Score=35.89 Aligned_cols=80 Identities=19% Similarity=0.195 Sum_probs=54.0
Q ss_pred CEEEECCCCCCHHHHHHHHHHCCCCEEHHHHCCHHHHHHHHHHHHHCCC-CCCEEEECCCCCCCCCCCCCEEEECCCCCC
Q ss_conf 2586013468827999999861688100552498999999999875028-860882155434457232467896275445
Q gi|254780634|r 233 SQILDFCAGGGGKTLALSMLLNNKGQIHAWDNNKSRMAPIVARIKRAGI-HNVQLHSSWESLRNLQEHFTTVLVDAPCSG 311 (429)
Q Consensus 233 ~~vLD~CAapGGKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~-~~v~~~~~~~~~~~~~~~fd~vl~DaPCSg 311 (429)
++|+|+|||.||=++.+.+. +--.+.|+|+++.-.+..+.|..-..+ ..|. +.......+.+|.|+.-.||.+
T Consensus 1 l~v~dLFsG~GG~s~Gl~~a--G~~~~~a~e~d~~a~~t~~~N~~~~~~~~Di~----~~~~~~~~~~vDll~ggpPCQ~ 74 (275)
T cd00315 1 LRVIDLFAGIGGFRLGLEKA--GFEIVAANEIDKSAAETYEANFPNKLIEGDIT----KIDEKDFIPDIDLLTGGFPCQP 74 (275)
T ss_pred CCEEEECCCCCHHHHHHHHC--CCEEEEEEECCHHHHHHHHHHCCCCCCCCCHH----HCCCCCCCCCCCEEEECCCCCC
T ss_conf 95999767807899999986--99899999689999999998879995258864----4653213788788986899987
Q ss_pred CHHHHHH
Q ss_conf 0444442
Q gi|254780634|r 312 TGTWRRR 318 (429)
Q Consensus 312 ~G~~rr~ 318 (429)
.=..+++
T Consensus 75 fS~ag~~ 81 (275)
T cd00315 75 FSIAGKR 81 (275)
T ss_pred CCCCCCC
T ss_conf 3547863
No 157
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=95.72 E-value=0.041 Score=34.08 Aligned_cols=129 Identities=15% Similarity=0.093 Sum_probs=85.7
Q ss_pred CCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHCCCCEEHHHHCCHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCC--
Q ss_conf 542112366666258601346882799999986168810055249899999999987502886088215543445723--
Q gi|254780634|r 221 QIVSNLTAITNSSQILDFCAGGGGKTLALSMLLNNKGQIHAWDNNKSRMAPIVARIKRAGIHNVQLHSSWESLRNLQE-- 298 (429)
Q Consensus 221 ql~~~~l~~~~g~~vLD~CAapGGKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~~~~~~~~~~-- 298 (429)
+-++...++.+++.||...+|.|.=|..|++. ...|+|+|+++.-+..|++.+. ...|+++...|....++..
T Consensus 20 ~kIv~~a~~~~~d~VlEIGpG~GaLT~~Ll~~---~~~v~aiEiD~~l~~~L~~~~~--~~~n~~vi~~DaLk~d~~~l~ 94 (259)
T COG0030 20 DKIVEAANISPGDNVLEIGPGLGALTEPLLER---AARVTAIEIDRRLAEVLKERFA--PYDNLTVINGDALKFDFPSLA 94 (259)
T ss_pred HHHHHHCCCCCCCEEEEECCCCCHHHHHHHHH---CCEEEEEEECHHHHHHHHHHHC--CCCCEEEEECCHHCCCCHHHC
T ss_conf 99998557899986999789877889999960---6957999968899999997506--566559994724247513515
Q ss_pred CCCEEEECCCCCCCHHHHHHHHHHHHCCHHHH-HHHHHHHHHHHHHHHHHHCCCCEEEEEECCC
Q ss_conf 24678962754450444442236672496789-9999987899999999608983899977588
Q gi|254780634|r 299 HFTTVLVDAPCSGTGTWRRRPDIKWRLSQKNL-IERTEEQKKILEESAQFVRPEGYLVYITCSI 361 (429)
Q Consensus 299 ~fd~vl~DaPCSg~G~~rr~Pe~~w~~~~~~~-~~~~~lQ~~iL~~a~~~lk~gG~lvYsTCS~ 361 (429)
.+++|.---|-+=+.-+=. +|-.....+ .-..-+|++.-++ ++.+-|.=-|+-=|+
T Consensus 95 ~~~~vVaNlPY~Isspii~----kll~~~~~~~~~v~M~QkEvaeR---l~A~pgsk~Yg~LsV 151 (259)
T COG0030 95 QPYKVVANLPYNISSPILF----KLLEEKFIIQDMVLMVQKEVAER---LVAKPGSKDYGRLSV 151 (259)
T ss_pred CCCEEEECCCCCCCHHHHH----HHHHCCCCCCEEEEEEHHHHHHH---HHCCCCCCCCCHHHH
T ss_conf 7888998089765679999----99846676542899829999999---717889865206655
No 158
>pfam00145 DNA_methylase C-5 cytosine-specific DNA methylase.
Probab=95.69 E-value=0.02 Score=36.22 Aligned_cols=78 Identities=19% Similarity=0.215 Sum_probs=51.3
Q ss_pred CEEEECCCCCCHHHHHHHHHHCCCCEEHHHHCCHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCCEEEECCCCCCC
Q ss_conf 25860134688279999998616881005524989999999998750288608821554344572324678962754450
Q gi|254780634|r 233 SQILDFCAGGGGKTLALSMLLNNKGQIHAWDNNKSRMAPIVARIKRAGIHNVQLHSSWESLRNLQEHFTTVLVDAPCSGT 312 (429)
Q Consensus 233 ~~vLD~CAapGGKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~~~~~~~~~~~fd~vl~DaPCSg~ 312 (429)
++|+|++||.||=++.+... +=-.+.|+|+++.-++..+.|....-..+|...+ . ..-..+|.|.--.||-|-
T Consensus 1 ~~vidlF~G~GG~s~G~~~a--G~~~~~a~e~d~~a~~ty~~N~~~~~~~Di~~~~----~-~~~~~~Dvl~ggpPCQ~f 73 (319)
T pfam00145 1 FKFIDLFAGIGGFRLGLEQA--GFECVAANEIDKSAAKTYEANFPKVPIGDITLID----I-KDIPDIDILTGGFPCQDF 73 (319)
T ss_pred CCEEEECCCCCHHHHHHHHC--CCEEEEEEECCHHHHHHHHHHCCCCCCCCCCCCC----H-HHCCCCCEEEECCCCCCC
T ss_conf 95899780707899999987--9929999838999999999877999617754088----7-478886889868999872
Q ss_pred HHHHH
Q ss_conf 44444
Q gi|254780634|r 313 GTWRR 317 (429)
Q Consensus 313 G~~rr 317 (429)
=+.++
T Consensus 74 S~ag~ 78 (319)
T pfam00145 74 SIAGK 78 (319)
T ss_pred CCCCC
T ss_conf 40155
No 159
>KOG1661 consensus
Probab=95.64 E-value=0.12 Score=30.87 Aligned_cols=108 Identities=14% Similarity=0.142 Sum_probs=76.8
Q ss_pred CCCCC--CCCCCEEEECCCCCCHHHHHHHHHHCCCCEE-HHHHCCHHHHHHHHHHHHHCCC----------CCCEEEECC
Q ss_conf 11236--6666258601346882799999986168810-0552498999999999875028----------860882155
Q gi|254780634|r 224 SNLTA--ITNSSQILDFCAGGGGKTLALSMLLNNKGQI-HAWDNNKSRMAPIVARIKRAGI----------HNVQLHSSW 290 (429)
Q Consensus 224 ~~~l~--~~~g~~vLD~CAapGGKt~~la~~~~~~g~i-~A~D~~~~Rl~~l~~~~~r~g~----------~~v~~~~~~ 290 (429)
...|+ .+||.+.||...|.|==|..++-+...+|.+ +-+|.++.=+..-++|+...-. ....+...|
T Consensus 73 le~L~~~L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivvGD 152 (237)
T KOG1661 73 LEYLDDHLQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVVGD 152 (237)
T ss_pred HHHHHHHHCCCCCEEECCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCEEEEECC
T ss_conf 99999862347310133787408999999994577766514441599999999877765047304556414864799677
Q ss_pred C-CCCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEC
Q ss_conf 4-34457232467896275445044444223667249678999999878999999996089838999775
Q gi|254780634|r 291 E-SLRNLQEHFTTVLVDAPCSGTGTWRRRPDIKWRLSQKNLIERTEEQKKILEESAQFVRPEGYLVYITC 359 (429)
Q Consensus 291 ~-~~~~~~~~fd~vl~DaPCSg~G~~rr~Pe~~w~~~~~~~~~~~~lQ~~iL~~a~~~lk~gG~lvYsTC 359 (429)
. ........||+|-|-|--|.+ | .+-.+.|++||.|+--.=
T Consensus 153 gr~g~~e~a~YDaIhvGAaa~~~--------------p--------------q~l~dqL~~gGrllip~~ 194 (237)
T KOG1661 153 GRKGYAEQAPYDAIHVGAAASEL--------------P--------------QELLDQLKPGGRLLIPVG 194 (237)
T ss_pred CCCCCCCCCCCCEEEECCCCCCC--------------H--------------HHHHHHHCCCCEEEEEEC
T ss_conf 62347756876657876676224--------------7--------------999986343872898611
No 160
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=95.63 E-value=0.044 Score=33.90 Aligned_cols=101 Identities=15% Similarity=0.062 Sum_probs=66.6
Q ss_pred CCCCCCCCEEEECCCCCCHHHHHHHHHHCCCCEEHHHHCCHHHHHHHHHHHHHCCCCCCEEEECCC--CC--CCCCCCCC
Q ss_conf 236666625860134688279999998616881005524989999999998750288608821554--34--45723246
Q gi|254780634|r 226 LTAITNSSQILDFCAGGGGKTLALSMLLNNKGQIHAWDNNKSRMAPIVARIKRAGIHNVQLHSSWE--SL--RNLQEHFT 301 (429)
Q Consensus 226 ~l~~~~g~~vLD~CAapGGKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~~~--~~--~~~~~~fd 301 (429)
...+.+|++|+=.-|||.|=...++.+..+..+|++.|.+++|++..+ ++|...+ +..... .. ......||
T Consensus 115 ~~~~~~g~~V~V~G~G~iGl~~~~~a~~~Ga~~Vi~~d~~~~rl~~a~----~~Ga~~~-i~~~~~~~~~~~~~~g~g~D 189 (280)
T TIGR03366 115 AAGDLKGRRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSPDRRELAL----SFGATAL-AEPEVLAERQGGLQNGRGVD 189 (280)
T ss_pred HCCCCCCCEEEEEECCHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHH----HCCCCEE-ECCCCHHHHHHHHHCCCCCC
T ss_conf 717899998999907868999999999849987999919989999999----7399898-37757799999972788870
Q ss_pred EEEECCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEC
Q ss_conf 7896275445044444223667249678999999878999999996089838999775
Q gi|254780634|r 302 TVLVDAPCSGTGTWRRRPDIKWRLSQKNLIERTEEQKKILEESAQFVRPEGYLVYITC 359 (429)
Q Consensus 302 ~vl~DaPCSg~G~~rr~Pe~~w~~~~~~~~~~~~lQ~~iL~~a~~~lk~gG~lvYsTC 359 (429)
.|+ -|+|.. ..++.+.+++++||++|..--
T Consensus 190 ~vi---e~~G~~-------------------------~~~~~a~~~l~~gG~iv~vG~ 219 (280)
T TIGR03366 190 VAL---EFSGAT-------------------------AAVRACLESLDVGGTAVLAGS 219 (280)
T ss_pred EEE---ECCCCH-------------------------HHHHHHHHHHHCCCEEEEECC
T ss_conf 999---878988-------------------------999999998604989999804
No 161
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=95.62 E-value=0.044 Score=33.87 Aligned_cols=106 Identities=17% Similarity=0.096 Sum_probs=69.2
Q ss_pred CCCCCCCEEEECCCCCCHHHHHHHHHHCCCCEEHHHHCCHHHHHHHHHHHHHCCCCCCEEEEC-CC---CCCCCC-CCCC
Q ss_conf 366666258601346882799999986168810055249899999999987502886088215-54---344572-3246
Q gi|254780634|r 227 TAITNSSQILDFCAGGGGKTLALSMLLNNKGQIHAWDNNKSRMAPIVARIKRAGIHNVQLHSS-WE---SLRNLQ-EHFT 301 (429)
Q Consensus 227 l~~~~g~~vLD~CAapGGKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~-~~---~~~~~~-~~fd 301 (429)
...+++.+|+=++|||=|=-+..+....+..+|++.|.++.|++..++.. |...+..... +. ...... ..||
T Consensus 164 ~~~~~~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~---g~~~~~~~~~~~~~~~~~~~t~g~g~D 240 (350)
T COG1063 164 AAVRPGGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAG---GADVVVNPSEDDAGAEILELTGGRGAD 240 (350)
T ss_pred CCCCCCCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHC---CCCEEECCCCHHHHHHHHHHCCCCCCC
T ss_conf 45788998999888899999999998769827999799989999999877---971872463014788999860898799
Q ss_pred EEEECCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCH
Q ss_conf 78962754450444442236672496789999998789999999960898389997758882
Q gi|254780634|r 302 TVLVDAPCSGTGTWRRRPDIKWRLSQKNLIERTEEQKKILEESAQFVRPEGYLVYITCSILP 363 (429)
Q Consensus 302 ~vl~DaPCSg~G~~rr~Pe~~w~~~~~~~~~~~~lQ~~iL~~a~~~lk~gG~lvYsTCS~~~ 363 (429)
.|+ -|||+.. .+..+.+++++||++++.-=+-..
T Consensus 241 ~vi---e~~G~~~-------------------------~~~~ai~~~r~gG~v~~vGv~~~~ 274 (350)
T COG1063 241 VVI---EAVGSPP-------------------------ALDQALEALRPGGTVVVVGVYGGE 274 (350)
T ss_pred EEE---ECCCCHH-------------------------HHHHHHHHCCCCCEEEEEECCCCC
T ss_conf 999---9989979-------------------------999999960259899999515886
No 162
>PRK11760 putative RNA 2'-O-ribose methyltransferase; Provisional
Probab=95.60 E-value=0.018 Score=36.51 Aligned_cols=78 Identities=17% Similarity=0.127 Sum_probs=52.2
Q ss_pred CCCCCCEEEECCCCCCHHHHHHHHHHCCCCEEHHHHCCHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCCEEEECC
Q ss_conf 66666258601346882799999986168810055249899999999987502886088215543445723246789627
Q gi|254780634|r 228 AITNSSQILDFCAGGGGKTLALSMLLNNKGQIHAWDNNKSRMAPIVARIKRAGIHNVQLHSSWESLRNLQEHFTTVLVDA 307 (429)
Q Consensus 228 ~~~~g~~vLD~CAapGGKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~~~~~~~~~~~fd~vl~Da 307 (429)
-..+|++.+|+.|+|||=|-+|..+ ...|+|+|.-+=. +.+--.|. ..+...+.....+....+|.+.||-
T Consensus 207 rl~~Gm~aVDLGAaPGGWT~qLv~r---g~~V~AVDnG~m~-----~~L~~~~~-V~H~~~dgf~f~P~~~~vdwlVCDm 277 (356)
T PRK11760 207 RLASGMRAVDLGACPGGWTYQLVRR---GMFVTAVDNGPMA-----ESLMDTGQ-VEHLRADGFKFRPTRKNVDWLVCDM 277 (356)
T ss_pred HCCCCCEEEECCCCCCHHHHHHHHC---CCEEEEECCCCCC-----HHHHCCCC-EEEEECCCEEECCCCCCEEEEEEEC
T ss_conf 2169975875586997058999977---9889986587678-----75752887-5788146705636998520899705
Q ss_pred CCCCCHH
Q ss_conf 5445044
Q gi|254780634|r 308 PCSGTGT 314 (429)
Q Consensus 308 PCSg~G~ 314 (429)
-..-.-+
T Consensus 278 vekP~rv 284 (356)
T PRK11760 278 VEKPARV 284 (356)
T ss_pred CCCHHHH
T ss_conf 3688999
No 163
>PRK10742 putative methyltransferase; Provisional
Probab=95.57 E-value=0.025 Score=35.53 Aligned_cols=85 Identities=18% Similarity=0.249 Sum_probs=65.6
Q ss_pred CCCCCCCCCCCCCC--EEEECCCCCCHHHHHHHHHHCCCCEEHHHHCCHHHHHHHHHHHHHCCC---------CCCEEEE
Q ss_conf 65421123666662--586013468827999999861688100552498999999999875028---------8608821
Q gi|254780634|r 220 SQIVSNLTAITNSS--QILDFCAGGGGKTLALSMLLNNKGQIHAWDNNKSRMAPIVARIKRAGI---------HNVQLHS 288 (429)
Q Consensus 220 Sql~~~~l~~~~g~--~vLD~CAapGGKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~---------~~v~~~~ 288 (429)
.|.++.+++.+.|. +|||+.||=|.-++.||++ + -+|+.+|.|+-=...|.+-++|+-. ...++..
T Consensus 75 gq~lakAvG~k~~~~P~VlDATAGLGrDAfvLAsl-G--c~VtliER~Pvv~aLL~DgL~RA~~~~e~~~~i~~Rm~L~~ 151 (250)
T PRK10742 75 GEAVAKAVGIKGDYLPDVVDATAGLGRDAFVLASV-G--CRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIH 151 (250)
T ss_pred CCHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHC-C--CEEEEEECCHHHHHHHHHHHHHHHHCCHHHHHHHHHCEEEC
T ss_conf 62667875667899981898788746889999817-9--86999978899999999999998738155899996167865
Q ss_pred CCC--CCCCCCCCCCEEEECC
Q ss_conf 554--3445723246789627
Q gi|254780634|r 289 SWE--SLRNLQEHFTTVLVDA 307 (429)
Q Consensus 289 ~~~--~~~~~~~~fd~vl~Da 307 (429)
.+. .+......+|.|.+|.
T Consensus 152 gds~~~L~~~~~~~DVIYLDP 172 (250)
T PRK10742 152 ASSLTALTDITPRPQVVYLDP 172 (250)
T ss_pred CCHHHHHHHCCCCCCEEEECC
T ss_conf 868999973588988899736
No 164
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=95.57 E-value=0.035 Score=34.58 Aligned_cols=114 Identities=15% Similarity=0.144 Sum_probs=80.2
Q ss_pred CCEEEECCCCCCHHHHHHHHHHCCCCEEHHHHCCHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCC-CCEEEECCCCC
Q ss_conf 62586013468827999999861688100552498999999999875028860882155434457232-46789627544
Q gi|254780634|r 232 SSQILDFCAGGGGKTLALSMLLNNKGQIHAWDNNKSRMAPIVARIKRAGIHNVQLHSSWESLRNLQEH-FTTVLVDAPCS 310 (429)
Q Consensus 232 g~~vLD~CAapGGKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~~~~~~~~~~~-fd~vl~DaPCS 310 (429)
+.+|+|..+|+|==..-|| .+.....++-.|...||+.=|++-.+.+|+.|+++............. ||.|..=|=+|
T Consensus 68 ~~~~~DIGSGaGfPGipLA-I~~p~~~vtLles~~Kk~~FL~~~~~eL~L~nv~i~~~RaE~~~~~~~~~D~vtsRAva~ 146 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLA-IAFPDLKVTLLESLGKKIAFLREVKKELGLENVEIVHGRAEEFGQEKKQYDVVTSRAVAS 146 (215)
T ss_pred CCEEEEECCCCCCCHHHHH-HHCCCCCEEEECCCCHHHHHHHHHHHHHCCCCEEEEHHHHHHCCCCCCCCCEEEEEEECC
T ss_conf 8879985799997317688-856688189971675079999999998599974986312766014466575898542025
Q ss_pred CCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHCHHHHHH
Q ss_conf 50444442236672496789999998789999999960898389997758882429998999
Q gi|254780634|r 311 GTGTWRRRPDIKWRLSQKNLIERTEEQKKILEESAQFVRPEGYLVYITCSILPEENIQQINY 372 (429)
Q Consensus 311 g~G~~rr~Pe~~w~~~~~~~~~~~~lQ~~iL~~a~~~lk~gG~lvYsTCS~~~~Ene~vv~~ 372 (429)
-. .+++-+.+++|+||.++--.=+-..+|=++.-++
T Consensus 147 L~--------------------------~l~e~~~pllk~~g~~~~~k~~~~~~e~~e~~~a 182 (215)
T COG0357 147 LN--------------------------VLLELCLPLLKVGGGFLAYKGLAGKDELPEAEKA 182 (215)
T ss_pred HH--------------------------HHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 68--------------------------8999999843468832026587655568999999
No 165
>KOG1541 consensus
Probab=95.44 E-value=0.14 Score=30.43 Aligned_cols=140 Identities=24% Similarity=0.207 Sum_probs=88.2
Q ss_pred EEEEECCCCCCCCCCCCCCC--CCEEEECCCCCCHHHHHHHHHHCCCCEEHHHHCCHHHHHHHHHHHHHCCCCCCEEEEC
Q ss_conf 48984155654211236666--6258601346882799999986168810055249899999999987502886088215
Q gi|254780634|r 212 WFEIQDEGSQIVSNLTAITN--SSQILDFCAGGGGKTLALSMLLNNKGQIHAWDNNKSRMAPIVARIKRAGIHNVQLHSS 289 (429)
Q Consensus 212 ~~~VQD~aSql~~~~l~~~~--g~~vLD~CAapGGKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~ 289 (429)
..+||-+=++-+.++|+.++ ...|||..||.|=-+..|.+ ..-..+-+|+|+.=|+...++.-. | ...+.+-
T Consensus 29 i~~IQ~em~eRaLELLalp~~~~~~iLDIGCGsGLSg~vL~~---~Gh~wiGvDiSpsML~~a~~~e~e-g--dlil~DM 102 (270)
T KOG1541 29 IVLIQAEMAERALELLALPGPKSGLILDIGCGSGLSGSVLSD---SGHQWIGVDISPSMLEQAVERELE-G--DLILCDM 102 (270)
T ss_pred EEEEHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCHHEECC---CCCEEEEECCCHHHHHHHHHHHHH-C--CEEEEEC
T ss_conf 432217788878987608998871799834577743200216---895588622898999999976640-4--7663124
Q ss_pred CCCCCCCCCCCCEEEE----CCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHH
Q ss_conf 5434457232467896----275445044444223667249678999999878999999996089838999775888242
Q gi|254780634|r 290 WESLRNLQEHFTTVLV----DAPCSGTGTWRRRPDIKWRLSQKNLIERTEEQKKILEESAQFVRPEGYLVYITCSILPEE 365 (429)
Q Consensus 290 ~~~~~~~~~~fd~vl~----DaPCSg~G~~rr~Pe~~w~~~~~~~~~~~~lQ~~iL~~a~~~lk~gG~lvYsTCS~~~~E 365 (429)
...++.-.++||.+|- --+|-..-.. .+|- ..+..+- ..-..++++|++-|.- +..|
T Consensus 103 G~GlpfrpGtFDg~ISISAvQWLcnA~~s~-~~P~-------~Rl~~FF-------~tLy~~l~rg~raV~Q----fYpe 163 (270)
T KOG1541 103 GEGLPFRPGTFDGVISISAVQWLCNADKSL-HVPK-------KRLLRFF-------GTLYSCLKRGARAVLQ----FYPE 163 (270)
T ss_pred CCCCCCCCCCCCEEEEEEEEEEECCCCCCC-CCHH-------HHHHHHH-------HHHHHHHCCCCEEEEE----ECCC
T ss_conf 788788997412478862032101468444-6738-------9999986-------6453210368615888----5245
Q ss_pred CHHHHHHHHHH
Q ss_conf 99989999985
Q gi|254780634|r 366 NIQQINYFLSK 376 (429)
Q Consensus 366 ne~vv~~fL~~ 376 (429)
|+++++-++..
T Consensus 164 n~~q~d~i~~~ 174 (270)
T KOG1541 164 NEAQIDMIMQQ 174 (270)
T ss_pred CHHHHHHHHHH
T ss_conf 46799999999
No 166
>pfam10294 Methyltransf_16 Putative methyltransferase.
Probab=95.40 E-value=0.24 Score=28.83 Aligned_cols=122 Identities=12% Similarity=0.112 Sum_probs=71.9
Q ss_pred CCCCEEEECCCCCCHHHHHHHHHHCCCCEEHHHHCCHHHHHHHHHHHHHCCC--CCCEEEE--CCCCCC---CCCCCCCE
Q ss_conf 6662586013468827999999861688100552498999999999875028--8608821--554344---57232467
Q gi|254780634|r 230 TNSSQILDFCAGGGGKTLALSMLLNNKGQIHAWDNNKSRMAPIVARIKRAGI--HNVQLHS--SWESLR---NLQEHFTT 302 (429)
Q Consensus 230 ~~g~~vLD~CAapGGKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~--~~v~~~~--~~~~~~---~~~~~fd~ 302 (429)
..|.+||++-||.|-=++.+|.. .+...|+..|. +.=+..+++|++..+. .++++.. +..... ...++||.
T Consensus 43 ~~~k~VLELGaG~GL~Gi~~a~~-~~~~~V~lTD~-~~~l~~l~~Nv~~N~~~~~~v~~~~LdWg~~~~~~~~~~~~fD~ 120 (171)
T pfam10294 43 LSGKNVLELGSGCGLVGIAVALL-LPGASVTITDL-EEAIELMKKNIELNKALSSKVTAKVLDWGEELPDDVFDPHPVDL 120 (171)
T ss_pred CCCCEEEEECCCCCHHHHHHHHH-CCCCEEEECCC-HHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCHHHCCCCCCCE
T ss_conf 06876787056657589999985-79858996383-78999999999970578996699981108988433314677678
Q ss_pred EEECCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHCHHHHHHHHHHCCCC
Q ss_conf 896275445044444223667249678999999878999999996089838999775888242999899999857997
Q gi|254780634|r 303 VLVDAPCSGTGTWRRRPDIKWRLSQKNLIERTEEQKKILEESAQFVRPEGYLVYITCSILPEENIQQINYFLSKNPHF 380 (429)
Q Consensus 303 vl~DaPCSg~G~~rr~Pe~~w~~~~~~~~~~~~lQ~~iL~~a~~~lk~gG~lvYsTCS~~~~Ene~vv~~fL~~~~~~ 380 (429)
||.= |+-| .++ ....+++-...+++|+|.++++. ..-. + -...|++.-.+|
T Consensus 121 Il~s-------------D~iY--~~~-------~~~~L~~ti~~ll~~~g~~lla~-~~R~---~-~~~~F~~~~~~~ 171 (171)
T pfam10294 121 ILAA-------------DCVY--NED-------AFPLLVKTLKDLLGKETVILVAY-KKRR---E-AEKRFFKLLKEF 171 (171)
T ss_pred EEEE-------------CEEE--CHH-------HHHHHHHHHHHHHCCCCEEEEEE-CCCC---H-HHHHHHHHHHHC
T ss_conf 9971-------------2133--577-------79999999999958998999997-8206---7-799999998639
No 167
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=95.39 E-value=0.083 Score=32.01 Aligned_cols=140 Identities=11% Similarity=0.058 Sum_probs=74.1
Q ss_pred CCCCCCCEEEECCCC-CCHHHHHHHHHHCCCCEEHHHHCCHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCCEEEE
Q ss_conf 366666258601346-8827999999861688100552498999999999875028860882155434457232467896
Q gi|254780634|r 227 TAITNSSQILDFCAG-GGGKTLALSMLLNNKGQIHAWDNNKSRMAPIVARIKRAGIHNVQLHSSWESLRNLQEHFTTVLV 305 (429)
Q Consensus 227 l~~~~g~~vLD~CAa-pGGKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~~~~~~~~~~~fd~vl~ 305 (429)
.+.+||++|+=.-+| -|-=+.++|..|. .+|+|.|+++.+++..+ ++|...+....+.+......+.||.||.
T Consensus 162 ~~~~pG~~V~I~G~GGlGh~avQ~Aka~g--a~Via~~~~~~K~e~a~----~lGAd~~i~~~~~~~~~~~~~~~d~ii~ 235 (339)
T COG1064 162 ANVKPGKWVAVVGAGGLGHMAVQYAKAMG--AEVIAITRSEEKLELAK----KLGADHVINSSDSDALEAVKEIADAIID 235 (339)
T ss_pred CCCCCCCEEEEECCCHHHHHHHHHHHHCC--CEEEEEECCHHHHHHHH----HHCCCEEEECCCCHHHHHHHHHCCEEEE
T ss_conf 38999989999877489999999999869--96999957877999999----8488289976781166776734739999
Q ss_pred CCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHCHHHHHHHHHHC
Q ss_conf 275445044444223667249678999999878999999996089838999775888242999899999857
Q gi|254780634|r 306 DAPCSGTGTWRRRPDIKWRLSQKNLIERTEEQKKILEESAQFVRPEGYLVYITCSILPEENIQQINYFLSKN 377 (429)
Q Consensus 306 DaPCSg~G~~rr~Pe~~w~~~~~~~~~~~~lQ~~iL~~a~~~lk~gG~lvYsTCS~~~~Ene~vv~~fL~~~ 377 (429)
-+| .- ++..-...-.+...--+--+.. ...++.--...+--+++-++...+-++.|.++..+ |..++
T Consensus 236 tv~-~~--~~~~~l~~l~~~G~~v~vG~~~-~~~~~~~~~~~li~~~~~i~GS~~g~~~d~~e~l~-f~~~g 302 (339)
T COG1064 236 TVG-PA--TLEPSLKALRRGGTLVLVGLPG-GGPIPLLPAFLLILKEISIVGSLVGTRADLEEALD-FAAEG 302 (339)
T ss_pred CCC-HH--HHHHHHHHHHCCCEEEEECCCC-CCCCCCCCHHHHHHCCCEEEEEECCCHHHHHHHHH-HHHHC
T ss_conf 877-45--5999999864297899978888-76666678778632670899972489999999999-99818
No 168
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=95.25 E-value=0.06 Score=32.98 Aligned_cols=101 Identities=16% Similarity=0.188 Sum_probs=59.9
Q ss_pred CCCCCCCCCEEEECCCCCCHHHHHHHHHHCCCCEEHHHHCCHHHHHHHHHHHHHCCCCCCEEEECCCCC----CC-CCCC
Q ss_conf 123666662586013468827999999861688100552498999999999875028860882155434----45-7232
Q gi|254780634|r 225 NLTAITNSSQILDFCAGGGGKTLALSMLLNNKGQIHAWDNNKSRMAPIVARIKRAGIHNVQLHSSWESL----RN-LQEH 299 (429)
Q Consensus 225 ~~l~~~~g~~vLD~CAapGGKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~~~~~----~~-~~~~ 299 (429)
......+|++||=.-|||=|-.........+-..|++.|.++.|++.++ ++|...+ +...+... .. ....
T Consensus 154 ~~~~~~~g~~vlV~GaG~vGl~aiq~ak~~Ga~~V~~~d~~~~kl~~a~----~lGAd~~-i~~~~~~~~~~~~~~~~~~ 228 (347)
T PRK10309 154 HLAQGCEGKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDINSEKLALAK----SLGAMQT-FNSREMSAPQIQSVLRELR 228 (347)
T ss_pred HHCCCCCCCEEEEECCCCHHHHHHHHHHHCCCCEEEEEECCHHHHHHHH----HCCCCEE-ECCCCCCHHHHHHHHCCCC
T ss_conf 6505888986999899838999999999859976999928999999999----7299899-8688779999999862998
Q ss_pred CCEEEECCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 4678962754450444442236672496789999998789999999960898389997
Q gi|254780634|r 300 FTTVLVDAPCSGTGTWRRRPDIKWRLSQKNLIERTEEQKKILEESAQFVRPEGYLVYI 357 (429)
Q Consensus 300 fd~vl~DaPCSg~G~~rr~Pe~~w~~~~~~~~~~~~lQ~~iL~~a~~~lk~gG~lvYs 357 (429)
||.|.+|+ +|.. ..++.+.++++++|+++-.
T Consensus 229 ~d~vvid~--~G~~-------------------------~~~~~a~~~~~~~G~iv~~ 259 (347)
T PRK10309 229 FDQLILET--AGVP-------------------------QTVELAIEIAGPRAQLALV 259 (347)
T ss_pred CCEEEEEC--CCCH-------------------------HHHHHHHHHHCCCEEEEEE
T ss_conf 88699979--9998-------------------------9999999961897499998
No 169
>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=95.24 E-value=0.024 Score=35.70 Aligned_cols=75 Identities=11% Similarity=0.145 Sum_probs=57.7
Q ss_pred CCEEEECCCCCCHHHHHHHHHHCCCCEEHHHHCCHHHHHHHHHHHHHCCCCCCEEEECCCCC--CCCCCCCCEEEECC
Q ss_conf 62586013468827999999861688100552498999999999875028860882155434--45723246789627
Q gi|254780634|r 232 SSQILDFCAGGGGKTLALSMLLNNKGQIHAWDNNKSRMAPIVARIKRAGIHNVQLHSSWESL--RNLQEHFTTVLVDA 307 (429)
Q Consensus 232 g~~vLD~CAapGGKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~~~~~--~~~~~~fd~vl~Da 307 (429)
..+|+|+-+|-|--..-.|--.+.. .+++||++++-.+.+++|+++....++.+...|+.. ......||.|=+|+
T Consensus 53 ~~~v~DalsatGiRgIRya~E~~~~-~v~lNDisp~Avelik~Nv~~N~~~~~~v~n~DAN~lm~~~~~~fd~IDiDP 129 (380)
T COG1867 53 PKRVLDALSATGIRGIRYAVETGVV-KVVLNDISPKAVELIKENVRLNSGEDAEVINKDANALLHELHRAFDVIDIDP 129 (380)
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCC-EEEECCCCHHHHHHHHHHHHHCCCCCCEEECCHHHHHHHHCCCCCCEEECCC
T ss_conf 7388643555336675453425761-7997158989999999999834766632553428999872588763781389
No 170
>TIGR00138 gidB methyltransferase GidB; InterPro: IPR003682 GidB (glucose-inhibited division protein B) appears to be present and in a single copy in all complete eubacterial genomes so far. Its mode of action is unknown, but a methytransferase fold is reported from the crystal structure. It may be a family of bacterial glucose inhibited division proteins that are involved in the regulation of cell division .; GO: 0007049 cell cycle.
Probab=95.23 E-value=0.1 Score=31.46 Aligned_cols=107 Identities=19% Similarity=0.313 Sum_probs=81.3
Q ss_pred CCCEEEECCCCCCHHHHHHHHHHCCCCEEHHHHCCHHHHHHHHHHHHHCCCCCCEEEECCCCC---CCCCCCCCEEEECC
Q ss_conf 662586013468827999999861688100552498999999999875028860882155434---45723246789627
Q gi|254780634|r 231 NSSQILDFCAGGGGKTLALSMLLNNKGQIHAWDNNKSRMAPIVARIKRAGIHNVQLHSSWESL---RNLQEHFTTVLVDA 307 (429)
Q Consensus 231 ~g~~vLD~CAapGGKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~~~~~---~~~~~~fd~vl~Da 307 (429)
++.+++|...|+|==-.-|+++...+-+++=.|.+.||+.=|++-..++|+.|+++....... ....++||.|..=|
T Consensus 49 ~~~~~~DiGSG~GfPGipL~Ci~~p~~~~~Lles~~KK~~FL~~v~~~L~L~N~~i~~~R~E~~g~~~~~~~~D~~~~RA 128 (197)
T TIGR00138 49 TGKKVIDIGSGAGFPGIPLACILRPELKLTLLESNKKKVNFLKEVKKELGLNNVEILNGRVEDLGSKQHEEQFDVITSRA 128 (197)
T ss_pred CCCEEEEECCCCCHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHHCCCCCHHEEHHHHHCCCCCCCCCCCEEEECC
T ss_conf 33126773478971456534220576428984277406899999999838998242001125505545333578789803
Q ss_pred CCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCH
Q ss_conf 54450444442236672496789999998789999999960898389997758882
Q gi|254780634|r 308 PCSGTGTWRRRPDIKWRLSQKNLIERTEEQKKILEESAQFVRPEGYLVYITCSILP 363 (429)
Q Consensus 308 PCSg~G~~rr~Pe~~w~~~~~~~~~~~~lQ~~iL~~a~~~lk~gG~lvYsTCS~~~ 363 (429)
=+|-. .+++-+.+++++||+++--==.-..
T Consensus 129 l~~l~--------------------------~~~e~~~~L~~~~G~~~~~KG~~~~ 158 (197)
T TIGR00138 129 LVSLN--------------------------ELLELTLPLLKVGGYFLAYKGKYLE 158 (197)
T ss_pred CHHHH--------------------------HHHHHHHHCCCCCCEEEEECCCCHH
T ss_conf 10246--------------------------8888663037889789997086658
No 171
>KOG4589 consensus
Probab=95.21 E-value=0.28 Score=28.43 Aligned_cols=136 Identities=15% Similarity=0.103 Sum_probs=85.2
Q ss_pred CCCCEEEECCCCCCHHHHHHHHHHCCCCEEHHHHCCHHHHHHHHHHHHHCCCCCCEEEE--CCCCC----CC-CCCCCCE
Q ss_conf 66625860134688279999998616881005524989999999998750288608821--55434----45-7232467
Q gi|254780634|r 230 TNSSQILDFCAGGGGKTLALSMLLNNKGQIHAWDNNKSRMAPIVARIKRAGIHNVQLHS--SWESL----RN-LQEHFTT 302 (429)
Q Consensus 230 ~~g~~vLD~CAapGGKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~--~~~~~----~~-~~~~fd~ 302 (429)
.||++|||+.||||.=|-.--++.++.|.|..+|+-.- .---|+..+...+ +.... .. ..-..|.
T Consensus 68 ~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh~--------~p~~Ga~~i~~~dvtdp~~~~ki~e~lp~r~Vdv 139 (232)
T KOG4589 68 RPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLHI--------EPPEGATIIQGNDVTDPETYRKIFEALPNRPVDV 139 (232)
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHCCCCEEEEEEEEEC--------CCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCE
T ss_conf 88877998167887189999886288742888743311--------4888764014324688889999998679983218
Q ss_pred EEECCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHCHH-HHHHHHHHCCCCE
Q ss_conf 896275445044444223667249678999999878999999996089838999775888242999-8999998579979
Q gi|254780634|r 303 VLVDAPCSGTGTWRRRPDIKWRLSQKNLIERTEEQKKILEESAQFVRPEGYLVYITCSILPEENIQ-QINYFLSKNPHFS 381 (429)
Q Consensus 303 vl~DaPCSg~G~~rr~Pe~~w~~~~~~~~~~~~lQ~~iL~~a~~~lk~gG~lvYsTCS~~~~Ene~-vv~~fL~~~~~~~ 381 (429)
||-|--=-.||+ .-.|-..+..|=.+.|.-|..+++|+|..| |-+-.-+-+. -.....+...+..
T Consensus 140 VlSDMapnaTGv-----------r~~Dh~~~i~LC~s~l~~al~~~~p~g~fv---cK~w~g~e~~~l~r~l~~~f~~Vk 205 (232)
T KOG4589 140 VLSDMAPNATGV-----------RIRDHYRSIELCDSALLFALTLLIPNGSFV---CKLWDGSEEALLQRRLQAVFTNVK 205 (232)
T ss_pred EEECCCCCCCCC-----------CHHHHHHHHHHHHHHHHHHHHHCCCCCEEE---EEEECCCCHHHHHHHHHHHHHHCE
T ss_conf 871357787675-----------124378999999999988632147785799---997049732899999999863217
Q ss_pred EEECCC
Q ss_conf 941430
Q gi|254780634|r 382 IDSIID 387 (429)
Q Consensus 382 ~~~~~~ 387 (429)
.+.+..
T Consensus 206 ~vKP~A 211 (232)
T KOG4589 206 KVKPDA 211 (232)
T ss_pred EECCCC
T ss_conf 627754
No 172
>TIGR01177 TIGR01177 conserved hypothetical protein TIGR01177; InterPro: IPR005885 This family of largely hypothetical proteins is found exclusively in the Archaea and contain a putative RNA methylase domain..
Probab=94.90 E-value=0.083 Score=32.02 Aligned_cols=134 Identities=19% Similarity=0.206 Sum_probs=100.9
Q ss_pred CCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHCCCCEEHHH-HCCHHHHHHHHHHHHHCCCCC--CEEEECCCCCCC
Q ss_conf 56542112366666258601346882799999986168810055-249899999999987502886--088215543445
Q gi|254780634|r 219 GSQIVSNLTAITNSSQILDFCAGGGGKTLALSMLLNNKGQIHAW-DNNKSRMAPIVARIKRAGIHN--VQLHSSWESLRN 295 (429)
Q Consensus 219 aSql~~~~l~~~~g~~vLD~CAapGGKt~~la~~~~~~g~i~A~-D~~~~Rl~~l~~~~~r~g~~~--v~~~~~~~~~~~ 295 (429)
-+...+.+....+|+.++|..+|.||-... +.+++ ..++.+ |+...-..-.+.|++..++.. ..+...+....+
T Consensus 191 ~~~~~~~~~~~~~g~~~~dp~~g~gg~~~~-~gl~g--~~~~g~gd~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~ 267 (358)
T TIGR01177 191 LARALVNLAGVKEGDRLLDPFCGTGGFLIE-AGLLG--AKPIGCGDLDWKLVEGARLNLEHYGIEDKVFSVKRGDAKDLP 267 (358)
T ss_pred HHHHHHHHHHCCCCCCEECCCCCCCCHHHH-HHHHC--CCCCCCCHHHHHHHCCCHHHHHHCCCCCCEEEEEECCCHHCC
T ss_conf 777776542024675100422266603323-33321--100024403567642521113330554315676403300111
Q ss_pred C---C--CCCCEEEECCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHCHH
Q ss_conf 7---2--32467896275445044444223667249678999999878999999996089838999775888242999
Q gi|254780634|r 296 L---Q--EHFTTVLVDAPCSGTGTWRRRPDIKWRLSQKNLIERTEEQKKILEESAQFVRPEGYLVYITCSILPEENIQ 368 (429)
Q Consensus 296 ~---~--~~fd~vl~DaPCSg~G~~rr~Pe~~w~~~~~~~~~~~~lQ~~iL~~a~~~lk~gG~lvYsTCS~~~~Ene~ 368 (429)
. . ..+|.+..|.|-.-.-. ..-..+..+....++.....++++|..+++.-+-...+...
T Consensus 268 ~~~~~~~~~~~~~~~d~p~g~~~~-------------~~~~~~~~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 332 (358)
T TIGR01177 268 LRLPGLDESVDAIATDPPYGRSTT-------------AAGDGLEELYEKSLEELHEVLKGGGWLAVAVPTDLDLESLA 332 (358)
T ss_pred CCCCCCHHHHHHHHCCCCCCCCCC-------------CCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHH
T ss_conf 003531011222212565453111-------------22103688888888888886426871799740334646654
No 173
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=94.89 E-value=0.11 Score=31.09 Aligned_cols=85 Identities=12% Similarity=0.110 Sum_probs=65.1
Q ss_pred CCCCCCCCCCCEEEECCCCCCHHHHHHHHHHCCCCEEHHHHCCHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCC-CCCC
Q ss_conf 211236666625860134688279999998616881005524989999999998750288608821554344572-3246
Q gi|254780634|r 223 VSNLTAITNSSQILDFCAGGGGKTLALSMLLNNKGQIHAWDNNKSRMAPIVARIKRAGIHNVQLHSSWESLRNLQ-EHFT 301 (429)
Q Consensus 223 ~~~~l~~~~g~~vLD~CAapGGKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~~~~~~~~~-~~fd 301 (429)
++..+++.+++.||+..+|+|.=|.+|++. ..+|+|+|+++.-...|+++.. +..|+++...|....++. ....
T Consensus 5 Iv~~a~~~~~d~VlEIGPG~G~LT~~Ll~~---~~~v~aiE~D~~l~~~L~~~~~--~~~n~~ii~~D~L~~~~~~~~~~ 79 (169)
T smart00650 5 IVRAANLRPGDTVLEIGPGKGALTEELLER---AARVTAIEIDPRLAPRLREKFA--AADNLTVIHGDALKFDLPKLQPY 79 (169)
T ss_pred HHHHHCCCCCCEEEEECCCHHHHHHHHHHH---CCCCCEEECCHHHHHHHHHHHC--CCCCEEEEECCHHCCCCCCCCCC
T ss_conf 988638999497999689702999999973---1635316378899999998641--07977999571112553115873
Q ss_pred EEEECCCCCCC
Q ss_conf 78962754450
Q gi|254780634|r 302 TVLVDAPCSGT 312 (429)
Q Consensus 302 ~vl~DaPCSg~ 312 (429)
+|.---|-.=+
T Consensus 80 ~iv~NLPY~Is 90 (169)
T smart00650 80 KVVGNLPYNIS 90 (169)
T ss_pred EEEECCCCCCH
T ss_conf 69934763011
No 174
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB; InterPro: IPR011825 This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA .; GO: 0016436 rRNA (uridine) methyltransferase activity, 0016070 RNA metabolic process.
Probab=94.83 E-value=0.026 Score=35.43 Aligned_cols=129 Identities=18% Similarity=0.252 Sum_probs=92.9
Q ss_pred CCCCCCCCEEEECCCCCCHHHHHHH----HHHCCCCEEHHHHCCHHHHHHHHHHHHHCCCCCCEEEECCCCC--CCCC-C
Q ss_conf 2366666258601346882799999----9861688100552498999999999875028860882155434--4572-3
Q gi|254780634|r 226 LTAITNSSQILDFCAGGGGKTLALS----MLLNNKGQIHAWDNNKSRMAPIVARIKRAGIHNVQLHSSWESL--RNLQ-E 298 (429)
Q Consensus 226 ~l~~~~g~~vLD~CAapGGKt~~la----~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~~~~~--~~~~-~ 298 (429)
++.--+-...||+.||=||=.+|=| +.-...-.|+-+||+..=+.-.++=++.+|+.|+.+..-|... ..-. .
T Consensus 232 WV~e~~~~~mWDLFCGVGGFgLHCAkalqekw~p~~~lTGIEI~~eAIa~A~~SA~~lGl~~~~F~aLDsa~f~~~~~e~ 311 (386)
T TIGR02085 232 WVRELPVKQMWDLFCGVGGFGLHCAKALQEKWGPDTQLTGIEIESEAIACAKQSAKILGLENLSFAALDSAKFATAQAES 311 (386)
T ss_pred HHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEEEEECHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHCCC
T ss_conf 99745711032010465412789989876415897044313437789999999998735332104544579999862368
Q ss_pred CCCEEEECCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHCHHHHHHHHHHCC
Q ss_conf 24678962754450444442236672496789999998789999999960898389997758882429998999998579
Q gi|254780634|r 299 HFTTVLVDAPCSGTGTWRRRPDIKWRLSQKNLIERTEEQKKILEESAQFVRPEGYLVYITCSILPEENIQQINYFLSKNP 378 (429)
Q Consensus 299 ~fd~vl~DaPCSg~G~~rr~Pe~~w~~~~~~~~~~~~lQ~~iL~~a~~~lk~gG~lvYsTCS~~~~Ene~vv~~fL~~~~ 378 (429)
..|.|||-.|==|.|- . |..-...+.|- +++||-|-- ..-..=+..-+
T Consensus 312 ~PeLVlVNPPRRGiG~--------------e-----------L~~~L~~~aP~-fILYSSCNa------~TM~KDi~~L~ 359 (386)
T TIGR02085 312 VPELVLVNPPRRGIGK--------------E-----------LCDYLSQLAPK-FILYSSCNA------QTMAKDIAELS 359 (386)
T ss_pred CCCEEEECCCCCCCCH--------------H-----------HHHHHHHCCCC-EEEECCCCH------HHHHHHHHHCC
T ss_conf 8965776788888760--------------6-----------89999750886-266216772------25899997556
Q ss_pred CCEEEECC
Q ss_conf 97994143
Q gi|254780634|r 379 HFSIDSII 386 (429)
Q Consensus 379 ~~~~~~~~ 386 (429)
.|+++.+-
T Consensus 360 ~Y~~~rvQ 367 (386)
T TIGR02085 360 GYKIERVQ 367 (386)
T ss_pred CCCEEEEE
T ss_conf 88357765
No 175
>KOG0024 consensus
Probab=94.54 E-value=0.18 Score=29.74 Aligned_cols=134 Identities=19% Similarity=0.179 Sum_probs=84.6
Q ss_pred HCCCEEEEECCCCCC-CCCCCCCCCCCEEEECCCCCCHHHHHHHHHHCCCCEEHHHHCCHHHHHHHHHHHHHCCCCCCEE
Q ss_conf 126548984155654-2112366666258601346882799999986168810055249899999999987502886088
Q gi|254780634|r 208 FQRGWFEIQDEGSQI-VSNLTAITNSSQILDFCAGGGGKTLALSMLLNNKGQIHAWDNNKSRMAPIVARIKRAGIHNVQL 286 (429)
Q Consensus 208 f~~G~~~VQD~aSql-~~~~l~~~~g~~vLD~CAapGGKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~ 286 (429)
|.+|.+ +|+.|-.+ ++...++++|.+||=+-|||=|=-+.+.+..-+..+|+..|+.+.|++..++ +|...+.-
T Consensus 146 ~eeGAl-~ePLsV~~HAcr~~~vk~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~----~Ga~~~~~ 220 (354)
T KOG0024 146 FEEGAL-IEPLSVGVHACRRAGVKKGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKK----FGATVTDP 220 (354)
T ss_pred HHHCCC-CCCHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHH----HCCEEEEC
T ss_conf 321301-4620221203332476668868997676899999999987498728996067779999998----29757730
Q ss_pred EECCCCCCC--------C-CCCCCEEEECCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 215543445--------7-2324678962754450444442236672496789999998789999999960898389997
Q gi|254780634|r 287 HSSWESLRN--------L-QEHFTTVLVDAPCSGTGTWRRRPDIKWRLSQKNLIERTEEQKKILEESAQFVRPEGYLVYI 357 (429)
Q Consensus 287 ~~~~~~~~~--------~-~~~fd~vl~DaPCSg~G~~rr~Pe~~w~~~~~~~~~~~~lQ~~iL~~a~~~lk~gG~lvYs 357 (429)
......... . ...||..+ -|||...- ++.|...++.||++|-+
T Consensus 221 ~~~~~~~~~~~~~v~~~~g~~~~d~~~---dCsG~~~~-------------------------~~aai~a~r~gGt~vlv 272 (354)
T KOG0024 221 SSHKSSPQELAELVEKALGKKQPDVTF---DCSGAEVT-------------------------IRAAIKATRSGGTVVLV 272 (354)
T ss_pred CCCCCCHHHHHHHHHHHCCCCCCCEEE---ECCCCHHH-------------------------HHHHHHHHCCCCEEEEE
T ss_conf 445565899999998641666798689---86660466-------------------------89899875128789996
Q ss_pred ECCCCHHHCHHHHHHHHHH
Q ss_conf 7588824299989999985
Q gi|254780634|r 358 TCSILPEENIQQINYFLSK 376 (429)
Q Consensus 358 TCS~~~~Ene~vv~~fL~~ 376 (429)
-|- .++++-.+-..+.+
T Consensus 273 g~g--~~~~~fpi~~v~~k 289 (354)
T KOG0024 273 GMG--AEEIQFPIIDVALK 289 (354)
T ss_pred CCC--CCCCCCCHHHHHHH
T ss_conf 547--87653573352233
No 176
>pfam01861 DUF43 Protein of unknown function DUF43. This family includes archaebacterial proteins of unknown function. All the members are 350-400 amino acids long.
Probab=94.33 E-value=0.39 Score=27.43 Aligned_cols=88 Identities=17% Similarity=0.170 Sum_probs=58.7
Q ss_pred CCCCEEHHHHCCHHHHHHHHHHHHHCCCCCCEEEECCCCC---CCCCCCCCEEEECCCCCCCHH---HHHHHH-------
Q ss_conf 1688100552498999999999875028860882155434---457232467896275445044---444223-------
Q gi|254780634|r 254 NNKGQIHAWDNNKSRMAPIVARIKRAGIHNVQLHSSWESL---RNLQEHFTTVLVDAPCSGTGT---WRRRPD------- 320 (429)
Q Consensus 254 ~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~~~~~---~~~~~~fd~vl~DaPCSg~G~---~rr~Pe------- 320 (429)
+-..+|+.+|+++.-+.-+.+.+++.|+ |++....|... +.+.++||.++-|+|-+=.|+ +.|--+
T Consensus 65 ~~p~~I~VvDIDeRll~fI~~~A~~~gl-~i~~~~~DlR~pLP~~l~~~FD~f~TDPPyT~~G~~LFlsRgi~~Lk~eg~ 143 (243)
T pfam01861 65 GLPKRIAVVDIDERLIKFIERVAKEEGL-KIEAFVHDLRNPLPEDLKHKFDVFITDPPETVDGLKAFLGRGIATLKGEGC 143 (243)
T ss_pred CCCCEEEEEECCHHHHHHHHHHHHHCCC-CEEEEEECCCCCCCHHHHCCCCEEECCCCCCHHHHHHHHHHHHHHHCCCCC
T ss_conf 8985489996758999999999997499-716887410148999996167989718998778999999999998266885
Q ss_pred HH---HHCCHHHHHHHHHHHHHHHH
Q ss_conf 66---72496789999998789999
Q gi|254780634|r 321 IK---WRLSQKNLIERTEEQKKILE 342 (429)
Q Consensus 321 ~~---w~~~~~~~~~~~~lQ~~iL~ 342 (429)
+- ....+..+.+...+|+.|++
T Consensus 144 agYfglt~~esS~~kw~~~Qk~l~~ 168 (243)
T pfam01861 144 AGYFGITHRESSLDKWREIQRMLIE 168 (243)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHHH
T ss_conf 2268764260149999999999998
No 177
>PRK09422 alcohol dehydrogenase; Provisional
Probab=94.11 E-value=0.15 Score=30.19 Aligned_cols=100 Identities=18% Similarity=0.194 Sum_probs=59.3
Q ss_pred CCCCCCCCEEEECCCCCCHHH-HHHHHHHCCCCEEHHHHCCHHHHHHHHHHHHHCCCCCCEEEE-CCC---CCCCCCCCC
Q ss_conf 236666625860134688279-999998616881005524989999999998750288608821-554---344572324
Q gi|254780634|r 226 LTAITNSSQILDFCAGGGGKT-LALSMLLNNKGQIHAWDNNKSRMAPIVARIKRAGIHNVQLHS-SWE---SLRNLQEHF 300 (429)
Q Consensus 226 ~l~~~~g~~vLD~CAapGGKt-~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~-~~~---~~~~~~~~f 300 (429)
....++|++||=.-||+.|-. .++|..+. ..+|++.|.++.|++.++ ++|...+.-.. .+. ......+.+
T Consensus 157 ~~~~~~G~~VlV~GaGgvG~~aiq~ak~~~-g~~Vi~~~~~~~k~~~a~----~lGad~vi~~~~~~~~~~~~~~~~gg~ 231 (338)
T PRK09422 157 VSGIKPGQWIAIYGAGGLGNLALQYAKNVF-NAKVIAVDINDDKLALAK----EVGADLTINSKRVEDVAKIIQEKTGGA 231 (338)
T ss_pred HHCCCCCCEEEEECCCHHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHH----HCCCCEEECCCCCCCHHHHHHHHCCCC
T ss_conf 848999988999688689999999999808-986999989999999999----729989981887434999999950997
Q ss_pred CEEEECCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEE
Q ss_conf 6789627544504444422366724967899999987899999999608983899977
Q gi|254780634|r 301 TTVLVDAPCSGTGTWRRRPDIKWRLSQKNLIERTEEQKKILEESAQFVRPEGYLVYIT 358 (429)
Q Consensus 301 d~vl~DaPCSg~G~~rr~Pe~~w~~~~~~~~~~~~lQ~~iL~~a~~~lk~gG~lvYsT 358 (429)
|.+++|+. .+. . +..+.++|++||++|..-
T Consensus 232 ~~~v~~~~---~~~--------------~-----------~~~~~~~l~~gG~~v~vG 261 (338)
T PRK09422 232 HAAVVTAV---AKA--------------A-----------FNQAVDAVRAGGRVVAVG 261 (338)
T ss_pred CEEEEECC---CHH--------------H-----------HHHHHHHHHCCCEEEEEC
T ss_conf 76999678---789--------------9-----------999999811699999987
No 178
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=93.90 E-value=0.17 Score=29.83 Aligned_cols=123 Identities=17% Similarity=0.215 Sum_probs=79.9
Q ss_pred CCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHCCCCEEHHHHCCHHHHHHHHHHHHHCC--CC--CCEEE--ECCCCCCC
Q ss_conf 42112366666258601346882799999986168810055249899999999987502--88--60882--15543445
Q gi|254780634|r 222 IVSNLTAITNSSQILDFCAGGGGKTLALSMLLNNKGQIHAWDNNKSRMAPIVARIKRAG--IH--NVQLH--SSWESLRN 295 (429)
Q Consensus 222 l~~~~l~~~~g~~vLD~CAapGGKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g--~~--~v~~~--~~~~~~~~ 295 (429)
.++.+.-+.| .+||=.--|.||=+-.+.... ..-+++.+|+++.=+...++-+.-.. .. -+++. +.-.....
T Consensus 68 h~~~~ah~~p-k~VLiiGgGdG~tlRevlkh~-~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~ 145 (282)
T COG0421 68 HVPLLAHPNP-KRVLIIGGGDGGTLREVLKHL-PVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRD 145 (282)
T ss_pred HCHHHHCCCC-CEEEEECCCCCHHHHHHHHCC-CCCEEEEEECCHHHHHHHHHHCCCCCCCCCCCCEEEEECCHHHHHHH
T ss_conf 0306437997-769998897669999998368-84337999708899999998666754335797368996107999874
Q ss_pred CCCCCCEEEECCC-CCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHH
Q ss_conf 7232467896275-445044444223667249678999999878999999996089838999775888242
Q gi|254780634|r 296 LQEHFTTVLVDAP-CSGTGTWRRRPDIKWRLSQKNLIERTEEQKKILEESAQFVRPEGYLVYITCSILPEE 365 (429)
Q Consensus 296 ~~~~fd~vl~DaP-CSg~G~~rr~Pe~~w~~~~~~~~~~~~lQ~~iL~~a~~~lk~gG~lvYsTCS~~~~E 365 (429)
..++||.|++|.- +.|-|. .-.+.+-.+...+.|+++|.+|.=+=|..-.-
T Consensus 146 ~~~~fDvIi~D~tdp~gp~~-------------------~Lft~eFy~~~~~~L~~~Gi~v~q~~~~~~~~ 197 (282)
T COG0421 146 CEEKFDVIIVDSTDPVGPAE-------------------ALFTEEFYEGCRRALKEDGIFVAQAGSPFLQD 197 (282)
T ss_pred CCCCCCEEEECCCCCCCCCC-------------------CCCCHHHHHHHHHHCCCCCEEEEECCCCCCCH
T ss_conf 88767789985889988430-------------------23779999999986288968999447843240
No 179
>PTZ00338 dimethyladenosine transferase; Provisional
Probab=93.84 E-value=0.2 Score=29.38 Aligned_cols=84 Identities=17% Similarity=0.240 Sum_probs=61.6
Q ss_pred CCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHCCCCEEHHHHCCHHHHHHHHHHHHHCCC-CCCEEEECCCCCCCCCCCC
Q ss_conf 421123666662586013468827999999861688100552498999999999875028-8608821554344572324
Q gi|254780634|r 222 IVSNLTAITNSSQILDFCAGGGGKTLALSMLLNNKGQIHAWDNNKSRMAPIVARIKRAGI-HNVQLHSSWESLRNLQEHF 300 (429)
Q Consensus 222 l~~~~l~~~~g~~vLD~CAapGGKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~-~~v~~~~~~~~~~~~~~~f 300 (429)
-++...++.+++.||....|.|.=|..|++. ...|+|+|+++.=...|++++.-.+. .|+++...|.....+ ..|
T Consensus 29 ~Iv~~a~~~~~d~VlEIGPG~G~LT~~Ll~~---~~~v~aiEiD~~l~~~L~~~~~~~~~~~n~~ii~~D~Lk~d~-~~~ 104 (296)
T PTZ00338 29 KIVEKAAIKPTDTVLEIGPGTGNLTEKLLQL---AKKVIAIEIDPRMVAELKKRFQNSPLASKLQVIEGDALKTEF-PYF 104 (296)
T ss_pred HHHHHCCCCCCCEEEEECCCCHHHHHHHHHC---CCCEEEEEECHHHHHHHHHHHHCCCCCCCCEEECCHHHHCCC-CCC
T ss_conf 9999607898995799668542999999835---891799994889999999998514456673577050531856-411
Q ss_pred CEEEECCCC
Q ss_conf 678962754
Q gi|254780634|r 301 TTVLVDAPC 309 (429)
Q Consensus 301 d~vl~DaPC 309 (429)
|.|.---|-
T Consensus 105 ~~vVaNLPY 113 (296)
T PTZ00338 105 DVCVANVPY 113 (296)
T ss_pred CEEEECCCC
T ss_conf 446635870
No 180
>TIGR00477 tehB tellurite resistance protein TehB; InterPro: IPR004537 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases . Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite.; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0046690 response to tellurium ion, 0005737 cytoplasm.
Probab=93.81 E-value=0.081 Score=32.10 Aligned_cols=142 Identities=20% Similarity=0.352 Sum_probs=102.6
Q ss_pred CCCCCCCCCCCEEEECCCCCCHHHHHHHHHHCCCCEEHHHHCCHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCCE
Q ss_conf 21123666662586013468827999999861688100552498999999999875028860882155434457232467
Q gi|254780634|r 223 VSNLTAITNSSQILDFCAGGGGKTLALSMLLNNKGQIHAWDNNKSRMAPIVARIKRAGIHNVQLHSSWESLRNLQEHFTT 302 (429)
Q Consensus 223 ~~~~l~~~~g~~vLD~CAapGGKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~~~~~~~~~~~fd~ 302 (429)
+..+...-..-++||+.||-|-=|+.|+.... .|.|+|.++.=+..+.+-..|-.+.|++...-|...-.+.+.||.
T Consensus 65 v~eAvk~v~PcKtLDLGCGqGrNsLyLsl~GY---DV~awD~n~~siA~v~~~k~~EnL~nl~t~~yDiNaa~~~e~YDF 141 (239)
T TIGR00477 65 VLEAVKVVKPCKTLDLGCGQGRNSLYLSLAGY---DVDAWDHNEASIASVEEIKEKENLDNLRTDVYDINAAALDEDYDF 141 (239)
T ss_pred HHHHHHCCCCCCEEECCCCCCHHHHHHHHHCC---CCEEECCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCE
T ss_conf 77555023798653268888537899976168---410121686688759988876267110046554335540127874
Q ss_pred EEECCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCE-EEEEE-------C----CCCHHHCHHHH
Q ss_conf 896275445044444223667249678999999878999999996089838-99977-------5----88824299989
Q gi|254780634|r 303 VLVDAPCSGTGTWRRRPDIKWRLSQKNLIERTEEQKKILEESAQFVRPEGY-LVYIT-------C----SILPEENIQQI 370 (429)
Q Consensus 303 vl~DaPCSg~G~~rr~Pe~~w~~~~~~~~~~~~lQ~~iL~~a~~~lk~gG~-lvYsT-------C----S~~~~Ene~vv 370 (429)
|+-=| | ---+..+.|. +|+.+.-+.-+|||+ |+=|- | |+.=.|||
T Consensus 142 I~sTV------V-------f~FL~a~rvP-------~iIanMq~hT~pGGYNLIVaAMdTaDyPC~~pFsFtFkE~E--- 198 (239)
T TIGR00477 142 ILSTV------V-------FMFLEAERVP-------EIIANMQEHTKPGGYNLIVAAMDTADYPCTLPFSFTFKEDE--- 198 (239)
T ss_pred EEEEH------H-------HHHHCCCCCH-------HHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCCCCHHH---
T ss_conf 21020------1-------2210588772-------67886587467987322233215788888853873441067---
Q ss_pred HHHHHH-CCCCEEEECCCCCCCCC
Q ss_conf 999985-79979941430022234
Q gi|254780634|r 371 NYFLSK-NPHFSIDSIIDDWNQLY 393 (429)
Q Consensus 371 ~~fL~~-~~~~~~~~~~~~~~~~~ 393 (429)
|++ +.||+++......+++.
T Consensus 199 ---Lr~YY~dWE~lkYnE~vGelH 219 (239)
T TIGR00477 199 ---LRRYYKDWELLKYNEDVGELH 219 (239)
T ss_pred ---HHHHHCCCCEEEEECCCCCHH
T ss_conf ---887741465334201113010
No 181
>pfam00398 RrnaAD Ribosomal RNA adenine dimethylase.
Probab=93.76 E-value=0.22 Score=29.14 Aligned_cols=129 Identities=14% Similarity=0.100 Sum_probs=75.9
Q ss_pred CCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHCCCCEEHHHHCCHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCC-CCC
Q ss_conf 4211236666625860134688279999998616881005524989999999998750288608821554344572-324
Q gi|254780634|r 222 IVSNLTAITNSSQILDFCAGGGGKTLALSMLLNNKGQIHAWDNNKSRMAPIVARIKRAGIHNVQLHSSWESLRNLQ-EHF 300 (429)
Q Consensus 222 l~~~~l~~~~g~~vLD~CAapGGKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~~~~~~~~~-~~f 300 (429)
-++..+++.+++.||+..+|+|.=|..|++. ...|+|+|+++.=+..|+++.. +..|+++...|.....+. ..-
T Consensus 21 kIv~~~~~~~~d~VlEIGPG~G~LT~~L~~~---~~~v~aiE~D~~l~~~L~~~~~--~~~~~~ii~~D~l~~d~~~~~~ 95 (258)
T pfam00398 21 RIVDKANLQESDTVLEIGPGKGALTEELAKR---AKQVVAIEIDPRLAKRLQKKLA--LHPNVEVVHQDFLKFSFPKHEP 95 (258)
T ss_pred HHHHHCCCCCCCEEEEECCCHHHHHHHHHHC---CCCEEEEECCHHHHHHHHHHHC--CCCCEEEEECCHHCCCCCCCCC
T ss_conf 9999708999997999799623999999961---6947999544779999998644--2897799966301057545786
Q ss_pred CEEEECCCCCCCH-HHHHHHH-HHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCC
Q ss_conf 6789627544504-4444223-667249678999999878999999996089838999775888
Q gi|254780634|r 301 TTVLVDAPCSGTG-TWRRRPD-IKWRLSQKNLIERTEEQKKILEESAQFVRPEGYLVYITCSIL 362 (429)
Q Consensus 301 d~vl~DaPCSg~G-~~rr~Pe-~~w~~~~~~~~~~~~lQ~~iL~~a~~~lk~gG~lvYsTCS~~ 362 (429)
-+|+---|-+-+. .+.+=-+ -+| .-..-..-+|++.-+ +++.+-|.--|+-.|+.
T Consensus 96 ~~vvgNLPY~Iss~il~~ll~~~~~----~~~~~vlmvQkEvA~---Rl~a~pg~k~y~~LSv~ 152 (258)
T pfam00398 96 FLVVGNIPYNITTPIVKKLLFEPRF----GRVKMLLVVQKEFAR---RLLARPGSKIYSRLTVL 152 (258)
T ss_pred EEEEECCCCCCCHHHHHHHHHCCCC----CCCEEEEEEEHHHHH---HHHCCCCCCCCCHHHHH
T ss_conf 1689448863417899999970476----720489998899999---98558998651368999
No 182
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=93.69 E-value=0.6 Score=26.15 Aligned_cols=123 Identities=14% Similarity=0.104 Sum_probs=80.4
Q ss_pred CCCCEEEECCCCCCHHHHHHHHHHCCCCEEHHHHCCHHHHHHHHHHHHHCCCCCCEEEE--CC----CCCCCCCCCCCEE
Q ss_conf 66625860134688279999998616881005524989999999998750288608821--55----4344572324678
Q gi|254780634|r 230 TNSSQILDFCAGGGGKTLALSMLLNNKGQIHAWDNNKSRMAPIVARIKRAGIHNVQLHS--SW----ESLRNLQEHFTTV 303 (429)
Q Consensus 230 ~~g~~vLD~CAapGGKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~--~~----~~~~~~~~~fd~v 303 (429)
.++..++++.||-+.||..|.+.+.....-+++|+|..-|....+++.+. ..++.+.. .+ ...++......++
T Consensus 62 ~~~~~lIElGsG~~~Kt~~LL~al~~~~~Y~plDIS~~~L~~s~~~l~~~-~p~l~v~~v~~dy~~~l~~~~~~~~~~rl 140 (301)
T TIGR03438 62 GAGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAAD-YPQLEVHGICADFTQPLALPPEPAAGRRL 140 (301)
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHH-CCCCEEEEEEECHHCHHHCCCCCCCCCCE
T ss_conf 76764773178862378999998621563887756899999999999977-89976899963331574456655788758
Q ss_pred EECCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHCHHHHHHHH
Q ss_conf 96275445044444223667249678999999878999999996089838999775888242999899999
Q gi|254780634|r 304 LVDAPCSGTGTWRRRPDIKWRLSQKNLIERTEEQKKILEESAQFVRPEGYLVYITCSILPEENIQQINYFL 374 (429)
Q Consensus 304 l~DaPCSg~G~~rr~Pe~~w~~~~~~~~~~~~lQ~~iL~~a~~~lk~gG~lvYsTCS~~~~Ene~vv~~fL 374 (429)
+.- |=|..|-+.+ .+. .++|.+..+.+.|||.|+=.+ .-.-+.+++...-
T Consensus 141 ~~f-lGSsIGNf~~----------~ea-------~~fL~~~~~~l~~~d~lLiG~---Dl~Kd~~~l~~AY 190 (301)
T TIGR03438 141 GFF-PGSTIGNFTP----------EEA-------VAFLRRIRQLLGPGGGLLIGV---DLVKDPAVLEAAY 190 (301)
T ss_pred EEE-CCCCCCCCCH----------HHH-------HHHHHHHHHHHCCCCEEEEEE---CCCCCHHHHHHHH
T ss_conf 997-0754478998----------999-------999999999719998489940---4456989999873
No 183
>PRK11524 putative methyltransferase; Provisional
Probab=93.48 E-value=0.14 Score=30.56 Aligned_cols=61 Identities=15% Similarity=0.073 Sum_probs=46.2
Q ss_pred CCCCCCCCCCC------CCCCCCEEEECCCCCCHHHHHHHHHHCCCCEEHHHHCCHHHHHHHHHHHHHCC
Q ss_conf 15565421123------66666258601346882799999986168810055249899999999987502
Q gi|254780634|r 217 DEGSQIVSNLT------AITNSSQILDFCAGGGGKTLALSMLLNNKGQIHAWDNNKSRMAPIVARIKRAG 280 (429)
Q Consensus 217 D~aSql~~~~l------~~~~g~~vLD~CAapGGKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g 280 (429)
+-.+|.+..|+ -..+|+.|||.++|.|+ +.+|+..-| -.-+.+|++++=.+..++|++...
T Consensus 188 ~HPt~kP~~L~e~lI~~~S~egDlVLDPF~GSGT--T~~aA~~lg-R~~IGiEi~~eY~~iA~~Ri~~~~ 254 (284)
T PRK11524 188 NHPTQKPEALLKRIILASSNPGDIVLDPFAGSFT--TGAVAKASG-RKFIGIEINEEYIKMGLRRLDVAS 254 (284)
T ss_pred CCCCCCHHHHHHHHHHHHCCCCCEEEECCCCCCH--HHHHHHHCC-CCEEEEECCHHHHHHHHHHHHHCC
T ss_conf 8898792999999999748899989957988868--999999829-958999689999999999987353
No 184
>TIGR02081 metW methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In Pseudomonas putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells . .
Probab=93.43 E-value=0.18 Score=29.67 Aligned_cols=74 Identities=19% Similarity=0.208 Sum_probs=46.9
Q ss_pred CCCCCEEEECCCCCCHHHHHHHHHHCCCC------EEHHHHCCHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCCE
Q ss_conf 66662586013468827999999861688------100552498999999999875028860882155434457232467
Q gi|254780634|r 229 ITNSSQILDFCAGGGGKTLALSMLLNNKG------QIHAWDNNKSRMAPIVARIKRAGIHNVQLHSSWESLRNLQEHFTT 302 (429)
Q Consensus 229 ~~~g~~vLD~CAapGGKt~~la~~~~~~g------~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~~~~~~~~~~~fd~ 302 (429)
..||++|||+-||=|.==..|.+.-+=.| ++.-+|++..=+-..-. =|+..|+-.-+..........||.
T Consensus 11 Ip~GSRVLDLGCGdG~LL~~L~d~k~v~GPPttehRL~G~Eid~~~v~Ac~~----RGv~VIq~Dld~GL~~F~D~~FD~ 86 (205)
T TIGR02081 11 IPPGSRVLDLGCGDGELLALLRDEKQVRGPPTTEHRLYGIEIDQDGVLACVA----RGVSVIQGDLDEGLEAFPDKSFDY 86 (205)
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHCCCCCCCCCCCEEEEEEECHHHHHHHHH----CCCCEECCCCCCCCCCCCCCCCCE
T ss_conf 6888736410168878999999743789888712000102345445999986----252013006003401167887662
Q ss_pred EEEC
Q ss_conf 8962
Q gi|254780634|r 303 VLVD 306 (429)
Q Consensus 303 vl~D 306 (429)
|++=
T Consensus 87 ViLs 90 (205)
T TIGR02081 87 VILS 90 (205)
T ss_pred EEEC
T ss_conf 5421
No 185
>KOG1975 consensus
Probab=93.36 E-value=0.099 Score=31.49 Aligned_cols=129 Identities=18% Similarity=0.234 Sum_probs=77.2
Q ss_pred CCCCCEEEECCCCCCHHHHHHHHHHCCCCEEHHHHCCHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCCEEEECCC
Q ss_conf 66662586013468827999999861688100552498999999999875028860882155434457232467896275
Q gi|254780634|r 229 ITNSSQILDFCAGGGGKTLALSMLLNNKGQIHAWDNNKSRMAPIVARIKRAGIHNVQLHSSWESLRNLQEHFTTVLVDAP 308 (429)
Q Consensus 229 ~~~g~~vLD~CAapGGKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~~~~~~~~~~~fd~vl~DaP 308 (429)
.+++..|+|+.||-||--+-- .-.+-+..+..||..--++..++|-+-+.-. .. .-.|..+++-+-
T Consensus 115 ~~~~~~~~~LgCGKGGDLlKw--~kAgI~~~igiDIAevSI~qa~~RYrdm~~r-------~~-----~~~f~a~f~~~D 180 (389)
T KOG1975 115 TKRGDDVLDLGCGKGGDLLKW--DKAGIGEYIGIDIAEVSINQARKRYRDMKNR-------FK-----KFIFTAVFIAAD 180 (389)
T ss_pred HCCCCCCCEECCCCCCCHHHH--HHHCCCCEEEEEHHHCCHHHHHHHHHHHHHH-------HH-----CCCCEEEEEEEC
T ss_conf 612230000056776207676--5514563576534340099999999999866-------64-----136516999714
Q ss_pred CCCCHHHHHH--HHHHHH-----CCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHCHHHHHHHHHHC
Q ss_conf 4450444442--236672-----49678999999878999999996089838999775888242999899999857
Q gi|254780634|r 309 CSGTGTWRRR--PDIKWR-----LSQKNLIERTEEQKKILEESAQFVRPEGYLVYITCSILPEENIQQINYFLSKN 377 (429)
Q Consensus 309 CSg~G~~rr~--Pe~~w~-----~~~~~~~~~~~lQ~~iL~~a~~~lk~gG~lvYsTCS~~~~Ene~vv~~fL~~~ 377 (429)
||+.-..-+- +|-+.- ..-.---+--+--+-+|.+++.+|+|||+.+=.+ -|-++|-+=|+..
T Consensus 181 c~~~~l~d~~e~~dp~fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG~FIgTi------Pdsd~Ii~rlr~~ 250 (389)
T KOG1975 181 CFKERLMDLLEFKDPRFDIVSCQFAFHYAFETEESARIALRNVAKCLKPGGVFIGTI------PDSDVIIKRLRAG 250 (389)
T ss_pred CCHHHHHHHCCCCCCCCCEEEEEEEEEEEECCHHHHHHHHHHHHHHCCCCCEEEEEC------CCHHHHHHHHHHC
T ss_conf 416689874257898855565545675431338889999998996358885799846------9689999999851
No 186
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=93.33 E-value=0.39 Score=27.43 Aligned_cols=114 Identities=15% Similarity=0.198 Sum_probs=65.0
Q ss_pred CCCCCCCEEEECCCCCCHHHHHHHHHHCCCCEEHHHHCCHHHHHHHHHHHHHCCCCCCEEEECCCCCCCC----------
Q ss_conf 3666662586013468827999999861688100552498999999999875028860882155434457----------
Q gi|254780634|r 227 TAITNSSQILDFCAGGGGKTLALSMLLNNKGQIHAWDNNKSRMAPIVARIKRAGIHNVQLHSSWESLRNL---------- 296 (429)
Q Consensus 227 l~~~~g~~vLD~CAapGGKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~~~~~~~~---------- 296 (429)
.++++|++|+=.-|||=|=......+..+ .+|++.|.++.|++.++ ++|...+ +...+......
T Consensus 162 ~~v~~g~~V~V~G~G~iGl~a~~~ak~~G-a~Vi~vd~~~~rle~a~----~~Ga~~~-i~~~~~~~~~~~~~~~~~~~~ 235 (349)
T TIGR03201 162 AGLKKGDLVIVIGAGGVGGYMVQTAKAMG-AAVVAIDIDPEKLEMMK----GFGADLT-LNPKDKSAREVKKLIKAFAKA 235 (349)
T ss_pred CCCCCCCEEEEECCCHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHH----HCCCCEE-ECCCCCCHHHHHHHHHHHCCC
T ss_conf 17899988999897489999999999859-97999949999999999----6499899-878767789999999754145
Q ss_pred ---CCCCCEEEECCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHCHHHHHHH
Q ss_conf ---23246789627544504444422366724967899999987899999999608983899977588824299989999
Q gi|254780634|r 297 ---QEHFTTVLVDAPCSGTGTWRRRPDIKWRLSQKNLIERTEEQKKILEESAQFVRPEGYLVYITCSILPEENIQQINYF 373 (429)
Q Consensus 297 ---~~~fd~vl~DaPCSg~G~~rr~Pe~~w~~~~~~~~~~~~lQ~~iL~~a~~~lk~gG~lvYsTCS~~~~Ene~vv~~f 373 (429)
....| +.+| |+|.. ..++.+.+++++||+++..- +...+.+-.+..+
T Consensus 236 ~G~~~~~~-~v~e--~~G~~-------------------------~~~~~a~~~~~~gG~iv~vG--~~~~~~~~~~~~l 285 (349)
T TIGR03201 236 RGLRSTGW-KIFE--CSGSK-------------------------PGQESALSLLSHGGTLVVVG--YTMAKTEYRLSNL 285 (349)
T ss_pred CCCCCCCC-EEEE--ECCCH-------------------------HHHHHHHHHCCCCCEEEEEC--CCCCCCCCCHHHH
T ss_conf 67565563-6998--24888-------------------------99999999735897999975--0599875548998
Q ss_pred HHH
Q ss_conf 985
Q gi|254780634|r 374 LSK 376 (429)
Q Consensus 374 L~~ 376 (429)
+..
T Consensus 286 ~~~ 288 (349)
T TIGR03201 286 MAF 288 (349)
T ss_pred HHC
T ss_conf 736
No 187
>KOG2361 consensus
Probab=93.23 E-value=0.028 Score=35.21 Aligned_cols=133 Identities=14% Similarity=0.184 Sum_probs=73.0
Q ss_pred HHCCCEEEEECCCCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHC-CCCEEHHHHCCHHHHHHHHHHHHHCCCCCCE
Q ss_conf 312654898415565421123666662586013468827999999861-6881005524989999999998750288608
Q gi|254780634|r 207 TFQRGWFEIQDEGSQIVSNLTAITNSSQILDFCAGGGGKTLALSMLLN-NKGQIHAWDNNKSRMAPIVARIKRAGIHNVQ 285 (429)
Q Consensus 207 ~f~~G~~~VQD~aSql~~~~l~~~~g~~vLD~CAapGGKt~~la~~~~-~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~ 285 (429)
-|++-.|.-|+-..-+++ +-++.+++|.+.||.|.-++-|.+--. +.-.|+|+|-++.-++.++++....- ..+.
T Consensus 50 FfkdR~wL~~Efpel~~~---~~~~~~~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~e-~~~~ 125 (264)
T KOG2361 50 FFKDRNWLLREFPELLPV---DEKSAETILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYDE-SRVE 125 (264)
T ss_pred CCCHHHHHHHHHHHHHCC---CCCCHHHHEEECCCCCCCCCHHHHCCCCCCEEEEECCCCHHHHHHHHHCCCCCH-HHHC
T ss_conf 531167787756775075---555734511222477751224442489987389974898689999873633264-5501
Q ss_pred EEECCCCCCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEE
Q ss_conf 8215543445723246789627544504444422366724967899999987899999999608983899977
Q gi|254780634|r 286 LHSSWESLRNLQEHFTTVLVDAPCSGTGTWRRRPDIKWRLSQKNLIERTEEQKKILEESAQFVRPEGYLVYIT 358 (429)
Q Consensus 286 ~~~~~~~~~~~~~~fd~vl~DaPCSg~G~~rr~Pe~~w~~~~~~~~~~~~lQ~~iL~~a~~~lk~gG~lvYsT 358 (429)
....|.+.+. +..+||+|+=-+-- +-+.++. | -..-+..-+.+..+++||||.|+..-
T Consensus 126 afv~Dlt~~~--------~~~~~~~~svD~it---~IFvLSA--i--~pek~~~a~~nl~~llKPGG~llfrD 183 (264)
T KOG2361 126 AFVWDLTSPS--------LKEPPEEGSVDIIT---LIFVLSA--I--HPEKMQSVIKNLRTLLKPGGSLLFRD 183 (264)
T ss_pred CCCEECCCHH--------CCCCCCCCCCCEEE---EEEEEEC--C--CHHHHHHHHHHHHHHHCCCCEEEEEE
T ss_conf 2000165601--------03788867633478---9998751--4--84778999999999748886799841
No 188
>TIGR01444 fkbM_fam methyltransferase, FkbM family; InterPro: IPR006342 Members of this group are characterised by two well-conserved short regions separated by a variable region in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterised as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548 ..
Probab=93.17 E-value=0.23 Score=28.96 Aligned_cols=56 Identities=20% Similarity=0.258 Sum_probs=49.3
Q ss_pred EEEECCCCCCHHHHHHHHHHCC-CCEEHHHHCCHHHHHHHHHHHHHCCCCC--CEEEEC
Q ss_conf 5860134688279999998616-8810055249899999999987502886--088215
Q gi|254780634|r 234 QILDFCAGGGGKTLALSMLLNN-KGQIHAWDNNKSRMAPIVARIKRAGIHN--VQLHSS 289 (429)
Q Consensus 234 ~vLD~CAapGGKt~~la~~~~~-~g~i~A~D~~~~Rl~~l~~~~~r~g~~~--v~~~~~ 289 (429)
.|+|.+|.-|.-|..++..... .|+|+|.|..+.-.+.|++|+.-.+..| +.+...
T Consensus 1 ~~~D~GAn~G~~~~~~~~~~~~~~~~v~afEP~p~~~~~l~~n~~~n~~~~~~~~~~~~ 59 (142)
T TIGR01444 1 VVIDVGANIGDFSLYFARKGAEGGGRVIAFEPLPDAYEILEENVKLNGLPNKEVKLLNA 59 (142)
T ss_pred CEEEECCCHHHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHHHHCCCCCCCEEEEEEE
T ss_conf 97870177047999999741788731899868957999999862037878732899730
No 189
>PRK00811 spermidine synthase; Provisional
Probab=93.09 E-value=0.75 Score=25.53 Aligned_cols=123 Identities=17% Similarity=0.221 Sum_probs=77.2
Q ss_pred CCCCEEEECCCCCCHHHHHHHHHHCCC--CEEHHHHCCHHHHHHHHHHHHHC--CC-C--CCEEEECC--CCCCCCCCCC
Q ss_conf 666258601346882799999986168--81005524989999999998750--28-8--60882155--4344572324
Q gi|254780634|r 230 TNSSQILDFCAGGGGKTLALSMLLNNK--GQIHAWDNNKSRMAPIVARIKRA--GI-H--NVQLHSSW--ESLRNLQEHF 300 (429)
Q Consensus 230 ~~g~~vLD~CAapGGKt~~la~~~~~~--g~i~A~D~~~~Rl~~l~~~~~r~--g~-~--~v~~~~~~--~~~~~~~~~f 300 (429)
....+||=+..|-||=.- +.++.. .+|+-+|+++.=++..++-+... |. . .+++...| ..+....++|
T Consensus 77 ~~pk~VLIiGGGDGg~~r---E~lkh~~v~~v~~VeiD~~Vi~~~~~~lp~~~~~~~~dprv~~~~~Dg~~fv~~~~~~y 153 (283)
T PRK00811 77 PNPKKVLIIGGGDGGTLR---EVLKHPSVEKITMVEIDERVVEMSRKYLPEISGGAWDDPRVELVIGDGVKFVRETENSF 153 (283)
T ss_pred CCCCEEEEECCCCHHHHH---HHHCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHCCCCCEEEEHHHHHHHHHHCCCCC
T ss_conf 997748995687479999---98427885679999468999999999838863133029715998278999998452355
Q ss_pred CEEEECCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHCHHHHHHHHH
Q ss_conf 678962754450444442236672496789999998789999999960898389997758882429998999998
Q gi|254780634|r 301 TTVLVDAPCSGTGTWRRRPDIKWRLSQKNLIERTEEQKKILEESAQFVRPEGYLVYITCSILPEENIQQINYFLS 375 (429)
Q Consensus 301 d~vl~DaPCSg~G~~rr~Pe~~w~~~~~~~~~~~~lQ~~iL~~a~~~lk~gG~lvYsTCS~~~~Ene~vv~~fL~ 375 (429)
|.|++|.|= |. .|.. .| ...+-.+.+.+.|+|||.+|-=+-|..- ..+.+...++
T Consensus 154 DvII~D~tD---------P~-----gpa~--~L--ft~~Fy~~~~~~L~~~Gi~v~Q~~sp~~--~~~~~~~~~~ 208 (283)
T PRK00811 154 DVIIVDSTD---------PV-----GPAE--GL--FTKEFYENCKRALKEGGIFVAQSESPFL--QADEIKDLHK 208 (283)
T ss_pred CEEEEECCC---------CC-----CHHH--HH--CCHHHHHHHHHHCCCCCEEEECCCCHHH--CHHHHHHHHH
T ss_conf 489980899---------88-----6445--53--4599999999853999589992798320--6999999999
No 190
>pfam04816 DUF633 Family of unknown function (DUF633). This family of proteins are uncharacterized have no known function.
Probab=92.91 E-value=0.79 Score=25.36 Aligned_cols=118 Identities=17% Similarity=0.190 Sum_probs=74.5
Q ss_pred ECCCCCCHHHHHHHHHHCCCCEEHHHHCCHHHHHHHHHHHHHCCCCC-CEEEECCCCCCC-CCCCCCEEEECCCCCCCHH
Q ss_conf 01346882799999986168810055249899999999987502886-088215543445-7232467896275445044
Q gi|254780634|r 237 DFCAGGGGKTLALSMLLNNKGQIHAWDNNKSRMAPIVARIKRAGIHN-VQLHSSWESLRN-LQEHFTTVLVDAPCSGTGT 314 (429)
Q Consensus 237 D~CAapGGKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~-v~~~~~~~~~~~-~~~~fd~vl~DaPCSg~G~ 314 (429)
|.++==|==...+.+.-. .-.++|+|+++.-+...++++.+.|+.+ |++.-.+....- ..+..|.|.+ .|+|-
T Consensus 3 DIGtDHayLpi~L~~~g~-~~~aiA~Dv~~gPl~~A~~~i~~~gl~~~I~~rlgdGL~~l~~~e~vd~ivI----AGMGG 77 (204)
T pfam04816 3 DIGSDHAYLPIYLVKNNL-ASFAIAGEVNKGPLQSAVKNVKKSGLTERIDVRLGDGLAVIEELDLIDVIVI----AGMGG 77 (204)
T ss_pred EECCCCHHHHHHHHHCCC-CCEEEEEECCHHHHHHHHHHHHHCCCCCEEEEEECCCHHCCCCCCCCCEEEE----ECCCH
T ss_conf 105450899999997799-8779996166749999999999759975389997784220586776577999----48689
Q ss_pred HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHCHHHHHHHHHHCCCCEEEEC
Q ss_conf 44422366724967899999987899999999608983899977588824299989999985799799414
Q gi|254780634|r 315 WRRRPDIKWRLSQKNLIERTEEQKKILEESAQFVRPEGYLVYITCSILPEENIQQINYFLSKNPHFSIDSI 385 (429)
Q Consensus 315 ~rr~Pe~~w~~~~~~~~~~~~lQ~~iL~~a~~~lk~gG~lvYsTCS~~~~Ene~vv~~fL~~~~~~~~~~~ 385 (429)
.+-.+||++....++...+|| +.|.-+...++.||..| +|.+++-
T Consensus 78 --------------------~lI~~IL~~~~~~~~~~~~lI-----LQP~~~~~~lR~~L~~~-g~~I~~E 122 (204)
T pfam04816 78 --------------------TLIADILEQGKNKLAGVKRLI-----LQPNINEEELREWLSQN-SWQIKAE 122 (204)
T ss_pred --------------------HHHHHHHHHCHHHHCCCCEEE-----EECCCCHHHHHHHHHHC-CCEEEEE
T ss_conf --------------------999999981845535757799-----95797859999999988-9978887
No 191
>PRK03612 spermidine synthase; Provisional
Probab=92.85 E-value=0.36 Score=27.65 Aligned_cols=128 Identities=20% Similarity=0.222 Sum_probs=76.1
Q ss_pred CCCCCCEEEECCCCCCHHHHHHHHHHCCC--CEEHHHHCCHHHHHHHHHH--HHHCCC-----CCCEEEECCC--CCCCC
Q ss_conf 66666258601346882799999986168--8100552498999999999--875028-----8608821554--34457
Q gi|254780634|r 228 AITNSSQILDFCAGGGGKTLALSMLLNNK--GQIHAWDNNKSRMAPIVAR--IKRAGI-----HNVQLHSSWE--SLRNL 296 (429)
Q Consensus 228 ~~~~g~~vLD~CAapGGKt~~la~~~~~~--g~i~A~D~~~~Rl~~l~~~--~~r~g~-----~~v~~~~~~~--~~~~~ 296 (429)
.....++||=+..|-|+-.-.+ .+.. .+|+-+|+++.=++..+++ +....- ..+++...|. .+...
T Consensus 290 ~~~~p~~VLiiGGGdG~a~rev---Lk~~~ve~v~lVelD~~vv~lar~~~~l~~~n~~a~~DpRv~v~~~Da~~~l~~~ 366 (516)
T PRK03612 290 ASPRARRVLILGGGDGLALREV---LKYPDVEQVTLVDLDPAVTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKL 366 (516)
T ss_pred CCCCCCEEEEECCCCCHHHHHH---HCCCCCCEEEEEECCHHHHHHHHHCCCHHHHHCCCCCCCCEEEEEHHHHHHHHHC
T ss_conf 6999773899837760879998---6489966378995188999999857214444123234996489853789999868
Q ss_pred CCCCCEEEECCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCC-HHHCHHHHHHHHH
Q ss_conf 232467896275445044444223667249678999999878999999996089838999775888-2429998999998
Q gi|254780634|r 297 QEHFTTVLVDAPCSGTGTWRRRPDIKWRLSQKNLIERTEEQKKILEESAQFVRPEGYLVYITCSIL-PEENIQQINYFLS 375 (429)
Q Consensus 297 ~~~fd~vl~DaPCSg~G~~rr~Pe~~w~~~~~~~~~~~~lQ~~iL~~a~~~lk~gG~lvYsTCS~~-~~Ene~vv~~fL~ 375 (429)
.++||.|++|-|=-.. |.. +++--+ +--..+.+.|+|||.+|-=.-|.. .-+-=..|..=++
T Consensus 367 ~~~yDvIi~D~pdP~~------~~~-~~LYs~----------eFY~~~~~~L~~~G~~v~qs~Sp~~~~~~f~~i~~T~~ 429 (516)
T PRK03612 367 PETFDAIIVDLPDPSN------PAL-GKLYSV----------EFYRLLKRRLAPDGLLVVQSTSPYFAPKAFWSIEATLE 429 (516)
T ss_pred CCCCCEEEEECCCCCC------CCC-CCCCCH----------HHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHHH
T ss_conf 8878889981899799------522-467539----------99999998449995899936897552203468999999
No 192
>pfam01564 Spermine_synth Spermine/spermidine synthase. Spermine and spermidine are polyamines. This family includes spermidine synthase that catalyses the fifth (last) step in the biosynthesis of spermidine from arginine, and spermine synthase.
Probab=92.76 E-value=0.83 Score=25.22 Aligned_cols=126 Identities=14% Similarity=0.149 Sum_probs=79.9
Q ss_pred CCCCEEEECCCCCCHHHHHHHHHHCCCCEEHHHHCCHHHHHHHHHHHHHCC--CC--CCEEEECCC--CCCCCCCCCCEE
Q ss_conf 666258601346882799999986168810055249899999999987502--88--608821554--344572324678
Q gi|254780634|r 230 TNSSQILDFCAGGGGKTLALSMLLNNKGQIHAWDNNKSRMAPIVARIKRAG--IH--NVQLHSSWE--SLRNLQEHFTTV 303 (429)
Q Consensus 230 ~~g~~vLD~CAapGGKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g--~~--~v~~~~~~~--~~~~~~~~fd~v 303 (429)
+...+||=+-.|-||=.-.+... .+-.+|+-+|+++.=++..++.+.... .. .+++...|+ .+.....+||.|
T Consensus 74 ~~pk~VLIiGGGDG~~~rEvlk~-~~v~~v~~VEiD~~Vv~~~~~~lp~~~~~~~dprv~l~~~Dg~~~l~~~~~~yDvI 152 (240)
T pfam01564 74 PNPKKVLIIGGGDGGALREVVKH-PSVEKITLVEIDEKVIEFSKKFLPSLAGGFDDPRVKVVIGDGFKFLKDYLVKFDVI 152 (240)
T ss_pred CCCCEEEEECCCCHHHHHHHHCC-CCCCEEEEECCCHHHHHHHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHCCCCCCEE
T ss_conf 88553676458657999998567-99538999757889999999987985243479855999816899998572544589
Q ss_pred EECCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHCHHHHHHHHHH
Q ss_conf 9627544504444422366724967899999987899999999608983899977588824299989999985
Q gi|254780634|r 304 LVDAPCSGTGTWRRRPDIKWRLSQKNLIERTEEQKKILEESAQFVRPEGYLVYITCSILPEENIQQINYFLSK 376 (429)
Q Consensus 304 l~DaPCSg~G~~rr~Pe~~w~~~~~~~~~~~~lQ~~iL~~a~~~lk~gG~lvYsTCS~~~~Ene~vv~~fL~~ 376 (429)
++|.|= |. ++.. . -.-.+..+.+.+.|+|||.+|-=.-|.. .+...+....+.
T Consensus 153 I~D~~D---------P~-----~~~~--~--Lfs~eFy~~~~~~L~~~Gi~v~Q~~sp~--~~~~~~~~i~~~ 205 (240)
T pfam01564 153 IVDSTD---------PV-----GPAE--N--LFSKEFYDLLKRALKEDGVFVTQAESPW--LHLELIINILKN 205 (240)
T ss_pred EEECCC---------CC-----CHHH--H--HHHHHHHHHHHHHCCCCCEEEEECCCHH--HCHHHHHHHHHH
T ss_conf 995899---------76-----5334--4--4229999999986599978999248834--379999999999
No 193
>PRK05396 tdh L-threonine 3-dehydrogenase; Validated
Probab=92.43 E-value=0.4 Score=27.40 Aligned_cols=96 Identities=18% Similarity=0.190 Sum_probs=58.8
Q ss_pred CCCCCEEEECCCCCCHH-HHHHHHHHCCCCEEHHHHCCHHHHHHHHHHHHHCCCCCCEEEECCCC----CCCC--CCCCC
Q ss_conf 66662586013468827-99999986168810055249899999999987502886088215543----4457--23246
Q gi|254780634|r 229 ITNSSQILDFCAGGGGK-TLALSMLLNNKGQIHAWDNNKSRMAPIVARIKRAGIHNVQLHSSWES----LRNL--QEHFT 301 (429)
Q Consensus 229 ~~~g~~vLD~CAapGGK-t~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~~~~----~~~~--~~~fd 301 (429)
+..|++||=.-||+-|= +.++|..++ -..|++.|.+++|++.++ ++|...+ +...... .... ...+|
T Consensus 161 ~~~g~~VlV~GaG~vGl~~~~~ak~~G-a~~Vi~~d~~~~kl~~a~----~lGa~~~-i~~~~~~~~~~~~~~t~~~G~D 234 (341)
T PRK05396 161 DLVGEDVLITGAGPIGIMAAAVAKHVG-ARHVVITDVNEYRLELAR----KMGATRA-VNVAKEDLRDVMAELGMTEGFD 234 (341)
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHCC-CEEEEEEECCHHHHHHHH----HCCCCEE-EECCCHHHHHHHHHHHCCCCCE
T ss_conf 778886999899754329999999849-928999948999999898----6499499-9688506899999974899976
Q ss_pred EEEECCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEE
Q ss_conf 789627544504444422366724967899999987899999999608983899977
Q gi|254780634|r 302 TVLVDAPCSGTGTWRRRPDIKWRLSQKNLIERTEEQKKILEESAQFVRPEGYLVYIT 358 (429)
Q Consensus 302 ~vl~DaPCSg~G~~rr~Pe~~w~~~~~~~~~~~~lQ~~iL~~a~~~lk~gG~lvYsT 358 (429)
.|+ | |+|.+.. ++.+++++++||+++..-
T Consensus 235 vvi-d--~~G~~~~-------------------------~~~~~~~l~~gG~vv~~G 263 (341)
T PRK05396 235 VGL-E--MSGAPSA-------------------------FRQMLDAMNHGGRIAMLG 263 (341)
T ss_pred EEE-E--CCCCHHH-------------------------HHHHHHHHHCCCEEEEEE
T ss_conf 999-8--7898999-------------------------999999863598999995
No 194
>TIGR00308 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2.1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs . The enzyme is found in both eukaryotes and archaea .; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing.
Probab=92.40 E-value=0.062 Score=32.87 Aligned_cols=80 Identities=14% Similarity=0.176 Sum_probs=63.8
Q ss_pred CCCCCCEEEECCCCCCHHHHHHHHHHC--CCCEEHHHHCCHHHHHHHHHHHHHCCCCCCEEEECCCCCC-C-----CCCC
Q ss_conf 666662586013468827999999861--6881005524989999999998750288608821554344-5-----7232
Q gi|254780634|r 228 AITNSSQILDFCAGGGGKTLALSMLLN--NKGQIHAWDNNKSRMAPIVARIKRAGIHNVQLHSSWESLR-N-----LQEH 299 (429)
Q Consensus 228 ~~~~g~~vLD~CAapGGKt~~la~~~~--~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~~~~~~-~-----~~~~ 299 (429)
.-+|--.|+|+-||.|--.+=-|.=.+ +.-++++||++|+=++.+++|++--++.|+++...|+... . ....
T Consensus 91 rnePyi~~~dALSasGiRaiRya~E~~fngv~~v~~ND~~P~Ave~I~~N~~~N~v~N~~v~n~Da~~~L~~~nkat~~~ 170 (462)
T TIGR00308 91 RNEPYIEIADALSASGIRAIRYALEVEFNGVKKVFANDINPKAVESIKNNVKLNSVENIEVINEDAAAVLRKRNKATFRK 170 (462)
T ss_pred CCCHHHHHHHHHHCCCHHHHHHHHHCCCCCCEEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCHHHCCC
T ss_conf 65437899987510408899998744657610677534773788998841232442276545503799987512112367
Q ss_pred CCEEEECC
Q ss_conf 46789627
Q gi|254780634|r 300 FTTVLVDA 307 (429)
Q Consensus 300 fd~vl~Da 307 (429)
|+.|=+|+
T Consensus 171 F~viDiDP 178 (462)
T TIGR00308 171 FEVIDIDP 178 (462)
T ss_pred CCEEEECC
T ss_conf 64376478
No 195
>PRK13699 putative methylase; Provisional
Probab=92.20 E-value=0.28 Score=28.37 Aligned_cols=56 Identities=13% Similarity=0.086 Sum_probs=40.6
Q ss_pred CCCCCCCCC------CCCCCCEEEECCCCCCHHHHHHHHHHCCCCEEHHHHCCHHHHHHHHHHHH
Q ss_conf 565421123------66666258601346882799999986168810055249899999999987
Q gi|254780634|r 219 GSQIVSNLT------AITNSSQILDFCAGGGGKTLALSMLLNNKGQIHAWDNNKSRMAPIVARIK 277 (429)
Q Consensus 219 aSql~~~~l------~~~~g~~vLD~CAapGGKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~ 277 (429)
-+|.++.++ -..+|+.|||.|+|.|+ +.+|+...+. .-+.+|++++=.+..++|++
T Consensus 145 PtqKPv~L~e~lI~~~S~~gdlVLDPF~GSGT--T~vAA~~lgR-~fIGiEi~~~Y~~ia~~Rl~ 206 (227)
T PRK13699 145 PTEKPVTSLQPLIESFTHPNAIVLDPFAGSGS--TCVAALQSGR-RYIGIELLEQYHRAGQQRLA 206 (227)
T ss_pred CCCCCHHHHHHHHHHCCCCCCEEEECCCCCCH--HHHHHHHCCC-CEEEEECCHHHHHHHHHHHH
T ss_conf 98692999999999559999999977998758--9999998199-48999689999999999999
No 196
>KOG4300 consensus
Probab=91.81 E-value=0.72 Score=25.63 Aligned_cols=123 Identities=17% Similarity=0.235 Sum_probs=78.6
Q ss_pred CCCCCCCCEEEECCCCCCHHHHHHHHHHCCCCEEHHHHCCHHHHHHHHHHHHHCCCCCCE--EEECCCCCCC-CCCCCCE
Q ss_conf 236666625860134688279999998616881005524989999999998750288608--8215543445-7232467
Q gi|254780634|r 226 LTAITNSSQILDFCAGGGGKTLALSMLLNNKGQIHAWDNNKSRMAPIVARIKRAGIHNVQ--LHSSWESLRN-LQEHFTT 302 (429)
Q Consensus 226 ~l~~~~g~~vLD~CAapGGKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~--~~~~~~~~~~-~~~~fd~ 302 (429)
++.+...--||.+-+|+|.---..- +...-+|+..|.+++=-+.+.+.+......++. +.+.....+. ..+++|.
T Consensus 71 ~~gk~~K~~vLEvgcGtG~Nfkfy~--~~p~~svt~lDpn~~mee~~~ks~~E~k~~~~~~fvva~ge~l~~l~d~s~Dt 148 (252)
T KOG4300 71 FLGKSGKGDVLEVGCGTGANFKFYP--WKPINSVTCLDPNEKMEEIADKSAAEKKPLQVERFVVADGENLPQLADGSYDT 148 (252)
T ss_pred HHCCCCCCCEEEECCCCCCCCCCCC--CCCCCEEEEECCCHHHHHHHHHHHHHCCCCCEEEEEEECHHCCCCCCCCCEEE
T ss_conf 7343575136996146888853555--78885689867848799999988864257205777850521074213677115
Q ss_pred EEEC-CCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHCHHHHHHHHHH
Q ss_conf 8962-7544504444422366724967899999987899999999608983899977588824299989999985
Q gi|254780634|r 303 VLVD-APCSGTGTWRRRPDIKWRLSQKNLIERTEEQKKILEESAQFVRPEGYLVYITCSILPEENIQQINYFLSK 376 (429)
Q Consensus 303 vl~D-aPCSg~G~~rr~Pe~~w~~~~~~~~~~~~lQ~~iL~~a~~~lk~gG~lvYsTCS~~~~Ene~vv~~fL~~ 376 (429)
|.+- +-||-. -+.+.|.+.-++|+|||+++..-- -.+--.-...++..
T Consensus 149 VV~TlvLCSve-----------------------~~~k~L~e~~rlLRpgG~iifiEH---va~~y~~~n~i~q~ 197 (252)
T KOG4300 149 VVCTLVLCSVE-----------------------DPVKQLNEVRRLLRPGGRIIFIEH---VAGEYGFWNRILQQ 197 (252)
T ss_pred EEEEEEEECCC-----------------------CHHHHHHHHHHHCCCCCEEEEEEC---CCCCCHHHHHHHHH
T ss_conf 77788872057-----------------------799999998875088958999721---24421089999998
No 197
>KOG3191 consensus
Probab=91.20 E-value=0.84 Score=25.17 Aligned_cols=136 Identities=14% Similarity=0.215 Sum_probs=89.7
Q ss_pred CCEEEECCCCCCHHHHHHHHHHCCCCEEHHHHCCHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCCEEEECCCC--
Q ss_conf 625860134688279999998616881005524989999999998750288608821554344572324678962754--
Q gi|254780634|r 232 SSQILDFCAGGGGKTLALSMLLNNKGQIHAWDNNKSRMAPIVARIKRAGIHNVQLHSSWESLRNLQEHFTTVLVDAPC-- 309 (429)
Q Consensus 232 g~~vLD~CAapGGKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~~~~~~~~~~~fd~vl~DaPC-- 309 (429)
.+-+++..+|.|--|++|++.........|.|++++-+..-++.++..+.+...+.++-...-. .++.|.++.-.|-
T Consensus 44 ~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~~~~~V~tdl~~~l~-~~~VDvLvfNPPYVp 122 (209)
T KOG3191 44 PEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRVHIDVVRTDLLSGLR-NESVDVLVFNPPYVP 122 (209)
T ss_pred CEEEEEECCCCCHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHHCCCCCCEEEHHHHHHHC-CCCCCEEEECCCCCC
T ss_conf 6058993488465999999741777169995499899988799998557752056525776633-277308997899676
Q ss_pred ---CCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHCHHHHHHHHHHC
Q ss_conf ---45044444223667249678999999878999999996089838999775888242999899999857
Q gi|254780634|r 310 ---SGTGTWRRRPDIKWRLSQKNLIERTEEQKKILEESAQFVRPEGYLVYITCSILPEENIQQINYFLSKN 377 (429)
Q Consensus 310 ---Sg~G~~rr~Pe~~w~~~~~~~~~~~~lQ~~iL~~a~~~lk~gG~lvYsTCS~~~~Ene~vv~~fL~~~ 377 (429)
--.| -+.-+..|--.... -..-.++|...-++|.|-|..--.+|.=|.- +++++ +|+..
T Consensus 123 t~~~~i~--~~~i~~a~aGG~~G----r~v~d~ll~~v~~iLSp~Gv~Ylv~~~~N~p--~ei~k-~l~~~ 184 (209)
T KOG3191 123 TSDEEIG--DEGIASAWAGGKDG----REVTDRLLPQVPDILSPRGVFYLVALRANKP--KEILK-ILEKK 184 (209)
T ss_pred CCCCCCH--HHHHHHHHHCCCCH----HHHHHHHHHHHHHHCCCCCEEEEEEHHHCCH--HHHHH-HHHHC
T ss_conf 9854420--67788887457541----7899988764044428674377630130597--99999-87433
No 198
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=91.13 E-value=1.3 Score=24.00 Aligned_cols=106 Identities=24% Similarity=0.260 Sum_probs=64.5
Q ss_pred CCEEEECCCCCCHHHHHHHHHH----CC----CCEEHHHHCCHHHHHHHHHHH---------------HHC---CCC---
Q ss_conf 6258601346882799999986----16----881005524989999999998---------------750---288---
Q gi|254780634|r 232 SSQILDFCAGGGGKTLALSMLL----NN----KGQIHAWDNNKSRMAPIVARI---------------KRA---GIH--- 282 (429)
Q Consensus 232 g~~vLD~CAapGGKt~~la~~~----~~----~g~i~A~D~~~~Rl~~l~~~~---------------~r~---g~~--- 282 (429)
.-+||-+.|+-|--..-||-.+ .. .-+|+|.|++.+-|+..+.-. +|. +..
T Consensus 97 ~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~y 176 (268)
T COG1352 97 PIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGSY 176 (268)
T ss_pred CEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEEEECCHHHHHHHHCCCCCHHHHHCCCCHHHHHHHEEECCCCCE
T ss_conf 53999667689955899999999873322587438999979999999986288876676544998999633764699847
Q ss_pred --------CCEEEECCCCCCC-CCCCCCEEEECCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCE
Q ss_conf --------6088215543445-7232467896275445044444223667249678999999878999999996089838
Q gi|254780634|r 283 --------NVQLHSSWESLRN-LQEHFTTVLVDAPCSGTGTWRRRPDIKWRLSQKNLIERTEEQKKILEESAQFVRPEGY 353 (429)
Q Consensus 283 --------~v~~~~~~~~~~~-~~~~fd~vl~DaPCSg~G~~rr~Pe~~w~~~~~~~~~~~~lQ~~iL~~a~~~lk~gG~ 353 (429)
+|.....+..... ..+.||.|+|= |-=| -++ ...|.+|+..-+..|+|||.
T Consensus 177 ~v~~~ir~~V~F~~~NLl~~~~~~~~fD~IfCR-----------NVLI--YFd-------~~~q~~il~~f~~~L~~gG~ 236 (268)
T COG1352 177 RVKEELRKMVRFRRHNLLDDSPFLGKFDLIFCR-----------NVLI--YFD-------EETQERILRRFADSLKPGGL 236 (268)
T ss_pred EECHHHHCCCEEEECCCCCCCCCCCCCCEEEEC-----------CEEE--EEC-------HHHHHHHHHHHHHHHCCCCE
T ss_conf 987687624377535788875435898889984-----------1488--637-------89999999999997489978
Q ss_pred EEEE
Q ss_conf 9997
Q gi|254780634|r 354 LVYI 357 (429)
Q Consensus 354 lvYs 357 (429)
|+=-
T Consensus 237 LflG 240 (268)
T COG1352 237 LFLG 240 (268)
T ss_pred EEEC
T ss_conf 9982
No 199
>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]
Probab=91.09 E-value=0.36 Score=27.69 Aligned_cols=83 Identities=17% Similarity=0.202 Sum_probs=55.5
Q ss_pred CCEEEECCCCCCHHHHHHHHHHCCCCEEHHHHCCHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCC-CCCEEEECCCCC
Q ss_conf 6258601346882799999986168810055249899999999987502886088215543445723-246789627544
Q gi|254780634|r 232 SSQILDFCAGGGGKTLALSMLLNNKGQIHAWDNNKSRMAPIVARIKRAGIHNVQLHSSWESLRNLQE-HFTTVLVDAPCS 310 (429)
Q Consensus 232 g~~vLD~CAapGGKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~~~~~~~~~~-~fd~vl~DaPCS 310 (429)
..+++|+|||-||=++.+.+. +=-.+.|+|+++..++..+.|..- +.. +.-............ .+|.|+-=.||-
T Consensus 3 ~~~~idLFsG~GG~~lGf~~a--gf~~~~a~Eid~~a~~ty~~n~~~-~~~-~~~di~~~~~~~~~~~~~DvligGpPCQ 78 (328)
T COG0270 3 KMKVIDLFAGIGGLSLGFEEA--GFEIVFANEIDPPAVATYKANFPH-GDI-ILGDIKELDGEALRKSDVDVLIGGPPCQ 78 (328)
T ss_pred CCEEEEECCCCCHHHHHHHHC--CCEEEEEEECCHHHHHHHHHHCCC-CCC-HHHHHHHHCHHHCCCCCCCEEEECCCCC
T ss_conf 854998658756588999864--984899874698899999985888-742-0303766052223556763798589972
Q ss_pred CCHHHHHH
Q ss_conf 50444442
Q gi|254780634|r 311 GTGTWRRR 318 (429)
Q Consensus 311 g~G~~rr~ 318 (429)
+-=+..++
T Consensus 79 ~FS~aG~r 86 (328)
T COG0270 79 DFSIAGKR 86 (328)
T ss_pred CHHHHCCC
T ss_conf 13340776
No 200
>KOG2782 consensus
Probab=91.05 E-value=0.2 Score=29.42 Aligned_cols=90 Identities=16% Similarity=0.127 Sum_probs=55.5
Q ss_pred CCCCCCCCCCCEEEECCCCCCHHHHHHHHHHCCCCEEHHHHCCHHHHHHHHHHHHHC-------CCCCCEEEE-CCCCCC
Q ss_conf 211236666625860134688279999998616881005524989999999998750-------288608821-554344
Q gi|254780634|r 223 VSNLTAITNSSQILDFCAGGGGKTLALSMLLNNKGQIHAWDNNKSRMAPIVARIKRA-------GIHNVQLHS-SWESLR 294 (429)
Q Consensus 223 ~~~~l~~~~g~~vLD~CAapGGKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~-------g~~~v~~~~-~~~~~~ 294 (429)
+...+.|.+|...+||-=|.||.|..|.+... ..+++|.|.++---+........+ -+.|..-.. --....
T Consensus 35 vl~~lspv~g~sf~DmTfGagGHt~~ilqk~s-e~k~yalDrDP~A~~La~~~s~el~~~~l~a~Lg~Fs~~~~l~~~~g 113 (303)
T KOG2782 35 VLDILSPVRGRSFVDMTFGAGGHTSSILQKHS-ELKNYALDRDPVARKLAHFHSDELMHPTLKAVLGNFSYIKSLIADTG 113 (303)
T ss_pred HHHHCCCCCCCEEEEEECCCCCCHHHHHHHCC-HHHHHHHCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHC
T ss_conf 89872777886478875057742078887472-76640004586899999875575514669999851677799999818
Q ss_pred CCCCCCCEEEECCCCCCCH
Q ss_conf 5723246789627544504
Q gi|254780634|r 295 NLQEHFTTVLVDAPCSGTG 313 (429)
Q Consensus 295 ~~~~~fd~vl~DaPCSg~G 313 (429)
-....||.||.|--||..-
T Consensus 114 l~~~~vDGiLmDlGcSSMQ 132 (303)
T KOG2782 114 LLDVGVDGILMDLGCSSMQ 132 (303)
T ss_pred CCCCCCCEEEEECCCCCCC
T ss_conf 7757755487604765110
No 201
>KOG1709 consensus
Probab=90.99 E-value=0.84 Score=25.18 Aligned_cols=110 Identities=16% Similarity=0.209 Sum_probs=71.8
Q ss_pred CCCCEEEECCCCCCHHHHHHHHHHCCCCEEHHHHCCHHHHHHHHHHHHHCCCCCCEEE-EC-CCCCCC-CCCCCCEEEEC
Q ss_conf 6662586013468827999999861688100552498999999999875028860882-15-543445-72324678962
Q gi|254780634|r 230 TNSSQILDFCAGGGGKTLALSMLLNNKGQIHAWDNNKSRMAPIVARIKRAGIHNVQLH-SS-WESLRN-LQEHFTTVLVD 306 (429)
Q Consensus 230 ~~g~~vLD~CAapGGKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~-~~-~~~~~~-~~~~fd~vl~D 306 (429)
..|.+||...=|-|--.+.+.+. +--+-+-++.|+.-++++++..=|-.- ||.+. .. .+.++. ..+.||.|+-|
T Consensus 100 tkggrvLnVGFGMgIidT~iQe~--~p~~H~IiE~hp~V~krmr~~gw~ek~-nViil~g~WeDvl~~L~d~~FDGI~yD 176 (271)
T KOG1709 100 TKGGRVLNVGFGMGIIDTFIQEA--PPDEHWIIEAHPDVLKRMRDWGWREKE-NVIILEGRWEDVLNTLPDKHFDGIYYD 176 (271)
T ss_pred HCCCEEEEECCCHHHHHHHHHHC--CCCCEEEEECCHHHHHHHHHCCCCCCC-CEEEEECCHHHHHCCCCCCCCCEEEEE
T ss_conf 17964898423167788888635--986317873597899999863665445-468871346764401445675626751
Q ss_pred CCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHC
Q ss_conf 754450444442236672496789999998789999999960898389997758882429
Q gi|254780634|r 307 APCSGTGTWRRRPDIKWRLSQKNLIERTEEQKKILEESAQFVRPEGYLVYITCSILPEEN 366 (429)
Q Consensus 307 aPCSg~G~~rr~Pe~~w~~~~~~~~~~~~lQ~~iL~~a~~~lk~gG~lvYsTCS~~~~En 366 (429)
. +.-+ -+|+..+.. ++.++|||+|.+-| |-.+-.-|
T Consensus 177 T-------y~e~--------yEdl~~~hq-------h~~rLLkP~gv~Sy--fNg~~~~~ 212 (271)
T KOG1709 177 T-------YSEL--------YEDLRHFHQ-------HVVRLLKPEGVFSY--FNGLGADN 212 (271)
T ss_pred C-------HHHH--------HHHHHHHHH-------HHHHHCCCCCEEEE--ECCCCCCH
T ss_conf 3-------0167--------899999998-------77640087744888--43766412
No 202
>pfam06080 DUF938 Protein of unknown function (DUF938). This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=90.74 E-value=1.4 Score=23.76 Aligned_cols=137 Identities=15% Similarity=0.239 Sum_probs=86.0
Q ss_pred CCCCCEEEECCCCCCHHHHHHHHHHCCCCEEHHHHCCHHHHHHHHHHHHHCCCCCCEEEE-CCCCCCCC------CCCCC
Q ss_conf 666625860134688279999998616881005524989999999998750288608821-55434457------23246
Q gi|254780634|r 229 ITNSSQILDFCAGGGGKTLALSMLLNNKGQIHAWDNNKSRMAPIVARIKRAGIHNVQLHS-SWESLRNL------QEHFT 301 (429)
Q Consensus 229 ~~~g~~vLD~CAapGGKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~-~~~~~~~~------~~~fd 301 (429)
|..|.+||...+|-|-.+.++|..+.+ -.=.-.|+++..+..+...+...|+.|+.--- -|.....+ .+.||
T Consensus 23 ~~~~~~VLEIaSGTGQHav~fA~~lP~-l~WqPSD~~~~~~~sI~aw~~~~~l~Nl~~P~~LDv~~~~w~~~~~~~~~~d 101 (201)
T pfam06080 23 AKTTERVLEIASGTGQHAVFFAPLLPN-LTWQPSDPDPNLRGSIAAWADQQGLRNLRPPLHLDVTRPPWPVEAPAPASYD 101 (201)
T ss_pred CCCCCCEEEECCCCHHHHHHHHHHCCC-CEEECCCCCHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCCCCCCCCCC
T ss_conf 747885799768726999999987899-8851588887789999999874377766887376327899875556676600
Q ss_pred EEEECCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCEE-EEEECC----CCHHHCHHHHHHHHHH
Q ss_conf 78962754450444442236672496789999998789999999960898389-997758----8824299989999985
Q gi|254780634|r 302 TVLVDAPCSGTGTWRRRPDIKWRLSQKNLIERTEEQKKILEESAQFVRPEGYL-VYITCS----ILPEENIQQINYFLSK 376 (429)
Q Consensus 302 ~vl~DaPCSg~G~~rr~Pe~~w~~~~~~~~~~~~lQ~~iL~~a~~~lk~gG~l-vYsTCS----~~~~Ene~vv~~fL~~ 376 (429)
.|++ ..+ + +..|- ..=..+...+.+.|++||.| +|=--. ++.+-|++==++.-.+
T Consensus 102 ai~~----iN~--l--------HI~pw------~~~~~lf~ga~~~L~~gG~l~lYGPF~~~G~~ts~SN~~FD~~Lr~~ 161 (201)
T pfam06080 102 AIFS----INM--I--------HISPW------SCVEGLFRGAGRLLPPGGVLYIYGPYNQDGELTSDSNRDFDRSLRQR 161 (201)
T ss_pred HHHH----HHH--H--------HHCCH------HHHHHHHHHHHHHHCCCCEEEEECCCCCCCEECCCHHHHHHHHHHHC
T ss_conf 2330----025--7--------73789------99999999999985158826874650259976882589999999850
Q ss_pred CCCCEEEECC
Q ss_conf 7997994143
Q gi|254780634|r 377 NPHFSIDSII 386 (429)
Q Consensus 377 ~~~~~~~~~~ 386 (429)
+|++-+-++.
T Consensus 162 dp~~GiRD~e 171 (201)
T pfam06080 162 DPEWGIRDIE 171 (201)
T ss_pred CCCCCCCCHH
T ss_conf 9633783899
No 203
>pfam00107 ADH_zinc_N Zinc-binding dehydrogenase.
Probab=90.28 E-value=1.3 Score=23.96 Aligned_cols=86 Identities=20% Similarity=0.291 Sum_probs=50.0
Q ss_pred CHHHHHHHHHHCCCCEEHHHHCCHHHHHHHHHHHHHCCCCCCEEEECCCC---CCC-CC-CCCCEEEECCCCCCCHHHHH
Q ss_conf 82799999986168810055249899999999987502886088215543---445-72-32467896275445044444
Q gi|254780634|r 243 GGKTLALSMLLNNKGQIHAWDNNKSRMAPIVARIKRAGIHNVQLHSSWES---LRN-LQ-EHFTTVLVDAPCSGTGTWRR 317 (429)
Q Consensus 243 GGKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~~~~---~~~-~~-~~fd~vl~DaPCSg~G~~rr 317 (429)
|-=+.++|..++. .+|++.|.++.|++.++ ++|.+.+.-...+.. ... .. ..||.|+ -|+|.+
T Consensus 3 G~~~iq~ak~~Ga-~~Vi~~~~~~~r~~~a~----~lGa~~~i~~~~~~~~~~i~~~~~~~g~d~vi---d~~g~~---- 70 (131)
T pfam00107 3 GLAAVQLAKALGA-ARVIAVDRSEEKLELAK----ELGADHVINYRDEDFVERVRELTGGRGVDVVI---DCVGAP---- 70 (131)
T ss_pred HHHHHHHHHHCCC-CEEEEEECCHHHHHHHH----HCCCCCCCCCCCCCHHHHHHHCCCCCCCEEEE---ECCCCH----
T ss_conf 8999999998499-87999969889999999----75997323533221245565404997764988---668866----
Q ss_pred HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEE-ECCC
Q ss_conf 2236672496789999998789999999960898389997-7588
Q gi|254780634|r 318 RPDIKWRLSQKNLIERTEEQKKILEESAQFVRPEGYLVYI-TCSI 361 (429)
Q Consensus 318 ~Pe~~w~~~~~~~~~~~~lQ~~iL~~a~~~lk~gG~lvYs-TCS~ 361 (429)
..++.+.+++++||+++.. .++-
T Consensus 71 ---------------------~~~~~~~~~~~~~G~iv~~G~~~~ 94 (131)
T pfam00107 71 ---------------------ATLEQALELLRPGGRVVVVGLPGG 94 (131)
T ss_pred ---------------------HHHHHHHHHHCCCCEEEEEECCCC
T ss_conf ---------------------679999875359978999946789
No 204
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=90.19 E-value=1.4 Score=23.68 Aligned_cols=114 Identities=16% Similarity=0.144 Sum_probs=81.5
Q ss_pred CCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHCCCCEEHHHHCCHHHHHHHHHHHHHCCCCCCEEEECCC-----CCC-C
Q ss_conf 4211236666625860134688279999998616881005524989999999998750288608821554-----344-5
Q gi|254780634|r 222 IVSNLTAITNSSQILDFCAGGGGKTLALSMLLNNKGQIHAWDNNKSRMAPIVARIKRAGIHNVQLHSSWE-----SLR-N 295 (429)
Q Consensus 222 l~~~~l~~~~g~~vLD~CAapGGKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~~~-----~~~-~ 295 (429)
..+...+|+.|..||.+..|-|-=|-.|.+.+-....++|.|.++.=...|.+... |.. +.+.++ .+. .
T Consensus 39 ~M~s~I~pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~p--~~~---ii~gda~~l~~~l~e~ 113 (194)
T COG3963 39 KMASVIDPESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLYP--GVN---IINGDAFDLRTTLGEH 113 (194)
T ss_pred HHHHCCCCCCCCEEEEECCCCCHHHHHHHHCCCCCCCEEEEEECHHHHHHHHHHCC--CCC---CCCCCHHHHHHHHHHC
T ss_conf 99843484459764777698667689999657995436899827799999997588--751---3054056578778652
Q ss_pred CCCCCCEEEECCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECC
Q ss_conf 72324678962754450444442236672496789999998789999999960898389997758
Q gi|254780634|r 296 LQEHFTTVLVDAPCSGTGTWRRRPDIKWRLSQKNLIERTEEQKKILEESAQFVRPEGYLVYITCS 360 (429)
Q Consensus 296 ~~~~fd~vl~DaPCSg~G~~rr~Pe~~w~~~~~~~~~~~~lQ~~iL~~a~~~lk~gG~lvYsTCS 360 (429)
....||.|+.-.|--..-+ ..-.+||+.+...+.+||-+|--|-+
T Consensus 114 ~gq~~D~viS~lPll~~P~--------------------~~~iaile~~~~rl~~gg~lvqftYg 158 (194)
T COG3963 114 KGQFFDSVISGLPLLNFPM--------------------HRRIAILESLLYRLPAGGPLVQFTYG 158 (194)
T ss_pred CCCEEEEEEECCCCCCCCH--------------------HHHHHHHHHHHHHCCCCCEEEEEEEC
T ss_conf 7974016886560024867--------------------78999999999856899727999846
No 205
>pfam11599 AviRa RRNA methyltransferase AviRa. This family of proteins represents the methyltransferase AviRa from Streptomyces viridochromogenes. This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA.
Probab=89.69 E-value=0.37 Score=27.61 Aligned_cols=152 Identities=14% Similarity=0.147 Sum_probs=82.2
Q ss_pred CCCCCCCCCCCCCCHHCCHHHCCCEEEEECCCCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHCCC-CEEHHHHCCH
Q ss_conf 113456654446101109631265489841556542112366666258601346882799999986168-8100552498
Q gi|254780634|r 188 LRIPATKGKSRLPNVMNDITFQRGWFEIQDEGSQIVSNLTAITNSSQILDFCAGGGGKTLALSMLLNNK-GQIHAWDNNK 266 (429)
Q Consensus 188 ~~l~~~~~~~~~~~~~~~~~f~~G~~~VQD~aSql~~~~l~~~~g~~vLD~CAapGGKt~~la~~~~~~-g~i~A~D~~~ 266 (429)
-.+....+.+..|.-..+..|+. +...+.-+..-.+||.|||.|.--+.++=+-.+. ..++|.|+++
T Consensus 20 ~VL~sApG~P~FPVRLAsEifqR------------al~~~~g~~p~tlwDpCCG~gYlLTvlgLLhr~~i~~v~aSDVd~ 87 (249)
T pfam11599 20 RVLHHAGGEPAFPVRLALEIFER------------ALARLIGDAEISLWDCCCGGAYLLSILGLLHRNSIANLIASDIDP 87 (249)
T ss_pred EEEECCCCCCCCCHHHHHHHHHH------------HHHHCCCCCCCCEEECCCCCHHHHHHHHHHCHHHHHHHHHCCCCH
T ss_conf 37643899988418999999999------------998626888730330577711899999985315787777425887
Q ss_pred HHHHHHHHHHHHC---CCCC--------------CE-------------------------EEECCCCCC------CCCC
Q ss_conf 9999999998750---2886--------------08-------------------------821554344------5723
Q gi|254780634|r 267 SRMAPIVARIKRA---GIHN--------------VQ-------------------------LHSSWESLR------NLQE 298 (429)
Q Consensus 267 ~Rl~~l~~~~~r~---g~~~--------------v~-------------------------~~~~~~~~~------~~~~ 298 (429)
.-++...+|+.-+ |+.- +. +...|-+.+ ....
T Consensus 88 ~al~LA~~NL~LLt~~GL~~R~~eL~e~~~~f~k~s~~~aa~aA~Rl~~~l~a~gg~~p~~~~~ADvfdp~~l~~~~~g~ 167 (249)
T pfam11599 88 APIELAADNLALLSKAGINAREDELKALSERFGKASHIDAAHAADRIEELLTAEGGALPCAIKTADLFDGNALEACDAGF 167 (249)
T ss_pred HHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHEECCCCCCHHHHHHCCC
T ss_conf 89999986454403201677899999999984882578899888999999860389986121000235860367774378
Q ss_pred CCCEEEECCCCCCCHHHHHHHHHHHHC--CHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHC
Q ss_conf 246789627544504444422366724--96789999998789999999960898389997758882429
Q gi|254780634|r 299 HFTTVLVDAPCSGTGTWRRRPDIKWRL--SQKNLIERTEEQKKILEESAQFVRPEGYLVYITCSILPEEN 366 (429)
Q Consensus 299 ~fd~vl~DaPCSg~G~~rr~Pe~~w~~--~~~~~~~~~~lQ~~iL~~a~~~lk~gG~lvYsTCS~~~~En 366 (429)
..|.|+-|.|---. ..|.- ..+-+ ..+|..-...|.+++.++-+|-.=...-|
T Consensus 168 ~pDiVvTDlPYGe~--------t~Weg~~~~~~v-------~g~l~~l~~vlp~~aVv~V~~~~~~k~~~ 222 (249)
T pfam11599 168 APDIIITDLPYGEM--------TEWEEQVGAGGI-------AGLLNALAAACGADAIIAVCMDKKQKIHN 222 (249)
T ss_pred CCCEEEECCCCCCE--------EEECCCCCCCCH-------HHHHHHHHHHCCCCEEEEEEECCCCCCCC
T ss_conf 88868843787740--------022377899767-------89999998657998089998168754787
No 206
>KOG3010 consensus
Probab=89.40 E-value=0.35 Score=27.79 Aligned_cols=122 Identities=12% Similarity=0.068 Sum_probs=64.9
Q ss_pred CCCCC-EEEECCCCCCHHHHHHHHHHCCCCEEHHHHCCHHHHHHHHHHHHH--CCCCCCEEEECCCCCCCCCCCCCEEEE
Q ss_conf 66662-586013468827999999861688100552498999999999875--028860882155434457232467896
Q gi|254780634|r 229 ITNSS-QILDFCAGGGGKTLALSMLLNNKGQIHAWDNNKSRMAPIVARIKR--AGIHNVQLHSSWESLRNLQEHFTTVLV 305 (429)
Q Consensus 229 ~~~g~-~vLD~CAapGGKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r--~g~~~v~~~~~~~~~~~~~~~fd~vl~ 305 (429)
..+++ ..||+.||+|--+..+|+..+ .|+|.|+++.-|+.+++.-.- .........+.+..+....++.|.|.+
T Consensus 30 ~~~~h~~a~DvG~G~Gqa~~~iae~~k---~VIatD~s~~mL~~a~k~~~~~y~~t~~~ms~~~~v~L~g~e~SVDlI~~ 106 (261)
T KOG3010 30 RTEGHRLAWDVGTGNGQAARGIAEHYK---EVIATDVSEAMLKVAKKHPPVTYCHTPSTMSSDEMVDLLGGEESVDLITA 106 (261)
T ss_pred HCCCCCEEEEECCCCCCCHHHHHHHHH---HHEEECCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEHH
T ss_conf 288864588845688711478887543---43130687999998611898620457853456656532378764121105
Q ss_pred CCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCC-CHHHCHHHHHHHHHH
Q ss_conf 27544504444422366724967899999987899999999608983899977588-824299989999985
Q gi|254780634|r 306 DAPCSGTGTWRRRPDIKWRLSQKNLIERTEEQKKILEESAQFVRPEGYLVYITCSI-LPEENIQQINYFLSK 376 (429)
Q Consensus 306 DaPCSg~G~~rr~Pe~~w~~~~~~~~~~~~lQ~~iL~~a~~~lk~gG~lvYsTCS~-~~~Ene~vv~~fL~~ 376 (429)
- -| +-|- |++++ ...+.+.||+.|-++=.=|.. +..-+.++..-+++.
T Consensus 107 A-qa-----------~HWF----dle~f-------y~~~~rvLRk~Gg~iavW~Y~dd~v~~pE~dsv~~r~ 155 (261)
T KOG3010 107 A-QA-----------VHWF----DLERF-------YKEAYRVLRKDGGLIAVWNYNDDFVDWPEFDSVMLRL 155 (261)
T ss_pred H-HH-----------HHHH----CHHHH-------HHHHHHHCCCCCCEEEEEECCCCCCCCHHHHHHHHHH
T ss_conf 4-56-----------7763----42999-------9999998077897799997247776778888999997
No 207
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=88.85 E-value=0.64 Score=25.96 Aligned_cols=126 Identities=16% Similarity=0.183 Sum_probs=66.5
Q ss_pred EECCCCCCCCCCCCCCCCCEEEECCCCCCHHHHHHH----HHHCCCCEEHHHHCCHHHHHHHHHHHHHC--CCCCCEEEE
Q ss_conf 841556542112366666258601346882799999----98616881005524989999999998750--288608821
Q gi|254780634|r 215 IQDEGSQIVSNLTAITNSSQILDFCAGGGGKTLALS----MLLNNKGQIHAWDNNKSRMAPIVARIKRA--GIHNVQLHS 288 (429)
Q Consensus 215 VQD~aSql~~~~l~~~~g~~vLD~CAapGGKt~~la----~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~--g~~~v~~~~ 288 (429)
-|.-+|+..+....-+...-|+-+|- .|||-+|= ...++.|.|--.-..-.-...|-.|++++ +..+..+..
T Consensus 101 ~Q~~as~~l~q~i~~k~~~lv~AV~G--aGKTEMif~~i~~al~~G~~vciASPRvDVclEl~~Rlk~aF~~~~I~~Lyg 178 (441)
T COG4098 101 GQKKASNQLVQYIKQKEDTLVWAVTG--AGKTEMIFQGIEQALNQGGRVCIASPRVDVCLELYPRLKQAFSNCDIDLLYG 178 (441)
T ss_pred HHHHHHHHHHHHHHHCCCEEEEEECC--CCCHHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEC
T ss_conf 47899999999987157689997427--9851016999999996598699846861011777899997621498666725
Q ss_pred CCC-------------CCCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH-HHHHHCCCCEE
Q ss_conf 554-------------3445723246789627544504444422366724967899999987899999-99960898389
Q gi|254780634|r 289 SWE-------------SLRNLQEHFTTVLVDAPCSGTGTWRRRPDIKWRLSQKNLIERTEEQKKILEE-SAQFVRPEGYL 354 (429)
Q Consensus 289 ~~~-------------~~~~~~~~fd~vl~DaPCSg~G~~rr~Pe~~w~~~~~~~~~~~~lQ~~iL~~-a~~~lk~gG~l 354 (429)
+.. .+.++...||.+++|- ++.+.-.--..|.. +-+..|++|.+
T Consensus 179 ~S~~~fr~plvVaTtHQLlrFk~aFD~liIDE----------------------VDAFP~~~d~~L~~Av~~ark~~g~~ 236 (441)
T COG4098 179 DSDSYFRAPLVVATTHQLLRFKQAFDLLIIDE----------------------VDAFPFSDDQSLQYAVKKARKKEGAT 236 (441)
T ss_pred CCCHHCCCCEEEEEHHHHHHHHHHCCEEEEEC----------------------CCCCCCCCCHHHHHHHHHHHCCCCCE
T ss_conf 87131334479976688888886433899830----------------------24565667888999999751236736
Q ss_pred EEEECCCCHH
Q ss_conf 9977588824
Q gi|254780634|r 355 VYITCSILPE 364 (429)
Q Consensus 355 vYsTCS~~~~ 364 (429)
+|-|-|-..+
T Consensus 237 IylTATp~k~ 246 (441)
T COG4098 237 IYLTATPTKK 246 (441)
T ss_pred EEEECCCHHH
T ss_conf 9996488078
No 208
>TIGR00073 hypB hydrogenase accessory protein HypB; InterPro: IPR004392 The hydrogenase accessory protein HypB is a GTP hydrolase for assembly of nickel metallocentre of hydrogenase. A similar protein, ureG, is an accessory protein for urease, which also uses nickel.; GO: 0016151 nickel ion binding, 0006461 protein complex assembly.
Probab=88.54 E-value=0.73 Score=25.58 Aligned_cols=141 Identities=20% Similarity=0.322 Sum_probs=91.8
Q ss_pred CCCCEEEECCCCCC-HHHHHHHHHHC---C--CCEEHHHHCCHHHHHHHHHHHHHCCCCCCEEEEC-----C--------
Q ss_conf 66625860134688-27999999861---6--8810055249899999999987502886088215-----5--------
Q gi|254780634|r 230 TNSSQILDFCAGGG-GKTLALSMLLN---N--KGQIHAWDNNKSRMAPIVARIKRAGIHNVQLHSS-----W-------- 290 (429)
Q Consensus 230 ~~g~~vLD~CAapG-GKt~~la~~~~---~--~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~-----~-------- 290 (429)
+.|-.|||+=.||| |||+.|-.+.. . +--|++.|.-.++ =.+|+++.|+.-+.+.++ +
T Consensus 31 ~~g~~~lNfmsspGSGKT~LiEk~~~~~~~~~K~Avi~GD~~t~~---DA~RlR~~G~~a~~~nTGk~CHLdA~mv~G~~ 107 (225)
T TIGR00073 31 KEGLLVLNFMSSPGSGKTTLIEKLIERLDDEVKIAVIEGDVQTKN---DADRLRKYGVPAIQINTGKECHLDAHMVAGAI 107 (225)
T ss_pred HCCCEEEEECCCCCCCHHHHHHHHHHHHCCCCCEEEEECCHHHHH---HHHHHHHCCCEEEEECCCCCCCCHHHHHHHHH
T ss_conf 659789980258861158999999998457897899975532255---69999864986886368864440166786587
Q ss_pred CCC-------------------------CCCCCCCCEEEECCCCCCCHHHHHHHHHH-----HHCCHHHHHHHHHHHHHH
Q ss_conf 434-------------------------45723246789627544504444422366-----724967899999987899
Q gi|254780634|r 291 ESL-------------------------RNLQEHFTTVLVDAPCSGTGTWRRRPDIK-----WRLSQKNLIERTEEQKKI 340 (429)
Q Consensus 291 ~~~-------------------------~~~~~~fd~vl~DaPCSg~G~~rr~Pe~~-----w~~~~~~~~~~~~lQ~~i 340 (429)
..+ +.+.+....||+=+| =|.=+.=|||.+- --.+..|+.+....-.+-
T Consensus 108 ~~L~~~~ld~~~DlL~IENVGNLvCP~~FdLGe~~rVvllSVT-EGdDk~lKyP~~F~~Ad~~~inK~DL~~~v~~D~ek 186 (225)
T TIGR00073 108 HALKDLPLDDISDLLLIENVGNLVCPADFDLGEHMRVVLLSVT-EGDDKVLKYPAMFKEADLILINKVDLAEAVGFDVEK 186 (225)
T ss_pred HHHHCCCCCCCCCEEEEEECCCCEECCCCCCCCCCEEEEEEEC-CCCCCCCCCCHHHHHHHHHHHCHHHHHHHHCCCHHH
T ss_conf 5542168887146268864476100673112356307999865-899965466158874445621478899770736789
Q ss_pred HHHHHHHHCCCCEEEEEECCCCHHHCHHHHHHHHHH
Q ss_conf 999999608983899977588824299989999985
Q gi|254780634|r 341 LEESAQFVRPEGYLVYITCSILPEENIQQINYFLSK 376 (429)
Q Consensus 341 L~~a~~~lk~gG~lvYsTCS~~~~Ene~vv~~fL~~ 376 (429)
+.+-++.++|.-.++-. |.-.-|+=+.+-.||+.
T Consensus 187 ~~~d~~~~nP~a~Ii~~--S~ktg~Gl~~w~~~l~~ 220 (225)
T TIGR00073 187 MKADARKINPEAEIILV--SAKTGKGLDEWLEFLEG 220 (225)
T ss_pred HHHHHHHHCCCEEEEEE--ECCCCCCHHHHHHHHHH
T ss_conf 99999862895079986--36897347899999998
No 209
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=88.52 E-value=0.86 Score=25.09 Aligned_cols=106 Identities=18% Similarity=0.243 Sum_probs=58.7
Q ss_pred CCEEEECCCCCCHHHHHHHHHH----C---CCCEEHHHHCCHHHHHHHHHHH--------------HHCCCC--------
Q ss_conf 6258601346882799999986----1---6881005524989999999998--------------750288--------
Q gi|254780634|r 232 SSQILDFCAGGGGKTLALSMLL----N---NKGQIHAWDNNKSRMAPIVARI--------------KRAGIH-------- 282 (429)
Q Consensus 232 g~~vLD~CAapGGKt~~la~~~----~---~~g~i~A~D~~~~Rl~~l~~~~--------------~r~g~~-------- 282 (429)
.-+||-+.|+-|--..-||-.+ + ..-+|+|.|++..-|...++-. .|.-..
T Consensus 116 ~lRIWSAgCSTGEEpYSiAm~l~E~~~~~~~~~~I~aTDIs~~~L~~Ar~GiY~~~~~~~~p~~~~~ryF~~~~~~~~g~ 195 (287)
T PRK10611 116 EYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRLEELKTLSPQQLQRYFMRGTGPHEGL 195 (287)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEEECCHHHHHHHHCCCCCHHHHHCCCHHHHHHHEECCCCCCCCE
T ss_conf 75899767788723999999999973237777079999798889999980898889984599999951164157876661
Q ss_pred ---------CCEEEECCCC--CCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf ---------6088215543--44572324678962754450444442236672496789999998789999999960898
Q gi|254780634|r 283 ---------NVQLHSSWES--LRNLQEHFTTVLVDAPCSGTGTWRRRPDIKWRLSQKNLIERTEEQKKILEESAQFVRPE 351 (429)
Q Consensus 283 ---------~v~~~~~~~~--~~~~~~~fd~vl~DaPCSg~G~~rr~Pe~~w~~~~~~~~~~~~lQ~~iL~~a~~~lk~g 351 (429)
.|.....+.. ..+..+.||.|+| ||-=| -.+ ...|.+++..-...|+||
T Consensus 196 ~~v~~~lr~~V~F~~~NL~~~~~~~~~~fDlIfC-----------RNVlI--YFd-------~~~q~~vl~~~~~~L~pg 255 (287)
T PRK10611 196 VRVRQELANYVDFQSLNLLAKQYTVPGPFDAIFC-----------RNVMI--YFD-------KTTQQEILRRFVPLLKPD 255 (287)
T ss_pred EEECHHHHCCCEEEHHHCCCCCCCCCCCCEEEEE-----------CCCCC--CCC-------HHHHHHHHHHHHHHHCCC
T ss_conf 8745787630777140067998888899519997-----------84053--678-------999999999999986899
Q ss_pred CEEEEE
Q ss_conf 389997
Q gi|254780634|r 352 GYLVYI 357 (429)
Q Consensus 352 G~lvYs 357 (429)
|+|+=-
T Consensus 256 G~L~lG 261 (287)
T PRK10611 256 GLLFAG 261 (287)
T ss_pred CEEEEE
T ss_conf 289983
No 210
>PRK00274 ksgA dimethyladenosine transferase; Reviewed
Probab=88.06 E-value=1.4 Score=23.65 Aligned_cols=82 Identities=13% Similarity=0.157 Sum_probs=58.9
Q ss_pred CCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHCCCCEEHHHHCCHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCC---
Q ss_conf 42112366666258601346882799999986168810055249899999999987502886088215543445723---
Q gi|254780634|r 222 IVSNLTAITNSSQILDFCAGGGGKTLALSMLLNNKGQIHAWDNNKSRMAPIVARIKRAGIHNVQLHSSWESLRNLQE--- 298 (429)
Q Consensus 222 l~~~~l~~~~g~~vLD~CAapGGKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~~~~~~~~~~--- 298 (429)
-++..+++.+++.||....|+|.=|-.|++. ...|+|+|+++.=...|++. .|+++...|....++..
T Consensus 30 kIv~~~~~~~~d~VlEIGpG~G~LT~~Ll~~---~~~v~aiEiD~~l~~~L~~~------~~~~ii~~D~L~~~~~~~~~ 100 (267)
T PRK00274 30 KIVRAADLQPGDRVLEIGPGLGALTEPLLER---AAKVTAIEIDRDLAPILRET------DNLTIIEGDALKVDLEELAE 100 (267)
T ss_pred HHHHHCCCCCCCEEEEECCCCCHHHHHHHHH---CCCEEEEECCHHHHHHHHHC------CCEEEEECHHHHCCHHHHCC
T ss_conf 9999608999990799638888899999962---68058863688999998504------78699965066478677456
Q ss_pred -CCCEEEECCCCCCC
Q ss_conf -24678962754450
Q gi|254780634|r 299 -HFTTVLVDAPCSGT 312 (429)
Q Consensus 299 -~fd~vl~DaPCSg~ 312 (429)
...+|+---|-.=+
T Consensus 101 ~~~~~vvgNLPY~Is 115 (267)
T PRK00274 101 GQPLKVVANLPYNIS 115 (267)
T ss_pred CCCEEEEECCCCHHH
T ss_conf 787279955883031
No 211
>PRK00536 speE spermidine synthase; Provisional
Probab=87.71 E-value=2.2 Score=22.31 Aligned_cols=122 Identities=9% Similarity=0.056 Sum_probs=74.2
Q ss_pred CCCCEEEECCCCCCHHHHHHHHHHCCCCEEHHHHCCHHHHHHHHHHHHHC--CCCCCEEEECCCCCCCCCCCCCEEEECC
Q ss_conf 66625860134688279999998616881005524989999999998750--2886088215543445723246789627
Q gi|254780634|r 230 TNSSQILDFCAGGGGKTLALSMLLNNKGQIHAWDNNKSRMAPIVARIKRA--GIHNVQLHSSWESLRNLQEHFTTVLVDA 307 (429)
Q Consensus 230 ~~g~~vLD~CAapGGKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~--g~~~v~~~~~~~~~~~~~~~fd~vl~Da 307 (429)
....+||=...|=||=.-. .++..-+|+-+|+++.=++..++-+--. +..+..+............+||.|++|.
T Consensus 71 p~Pk~VLIIGGGDGG~~RE---vlKH~~~v~~VEID~~Vv~~sk~ylP~~~~~~~dpr~~~~~~~~~~~~~~fDvIIvDs 147 (262)
T PRK00536 71 KELKEVLIVDGFDLELAHQ---LFKYDTHVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQLLDLDIKKYDLIICLQ 147 (262)
T ss_pred CCCCEEEEECCCCHHHHHH---HHCCCCEEEEEEECHHHHHHHHHHCHHHHHHHCCCCEEHHHHHHHHCCCCCCEEEECC
T ss_conf 9978799986875599999---8728976699996789999999978565654139961139998761547668899889
Q ss_pred CCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHCHHHHHHHHHHC-CCCEEE
Q ss_conf 5445044444223667249678999999878999999996089838999775888242999899999857-997994
Q gi|254780634|r 308 PCSGTGTWRRRPDIKWRLSQKNLIERTEEQKKILEESAQFVRPEGYLVYITCSILPEENIQQINYFLSKN-PHFSID 383 (429)
Q Consensus 308 PCSg~G~~rr~Pe~~w~~~~~~~~~~~~lQ~~iL~~a~~~lk~gG~lvYsTCS~~~~Ene~vv~~fL~~~-~~~~~~ 383 (429)
+. +.+-.+.+ .++|++||.+|.-+=|..-. .+.+...++.- +-|..+
T Consensus 148 ------l~----------~~~~~~~l-----------~~~L~~~Gi~v~Q~esp~~~--~~~~~~~~~~~~~~F~~~ 195 (262)
T PRK00536 148 ------EP----------DIHKIDGL-----------KRMLKEDGVFISVAKHPLLE--HVSMQNALKNMGHFFSIA 195 (262)
T ss_pred ------CC----------CCCHHHHH-----------HHHHCCCCEEEECCCCHHHC--HHHHHHHHHHHHHHCCEE
T ss_conf ------99----------80549999-----------99858998999838971207--999999999988659945
No 212
>COG0781 NusB Transcription termination factor [Transcription]
Probab=87.51 E-value=2.3 Score=22.24 Aligned_cols=64 Identities=11% Similarity=0.059 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHHHHHHCCC-CHHHHHH---HHHHHCCCCC-H-HHHHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 16899999999999995699-7899999---9998685889-5-5799999999999975899999705689
Q gi|254780634|r 3 LGGQIAAAIEILKDIRTHKK-PITNSLK---DWGMSHRFAG-S-SDRASISNIVHDVLRKYLSSAYIMDSDD 68 (429)
Q Consensus 3 ~~aR~~AA~eiL~~v~~~~~-~ad~~L~---~~~~~~r~lg-s-~DR~~i~~lvyg~lR~~~~ld~il~~~~ 68 (429)
-.||. +|++.|.+++-.+. .++.++. ..+.++ ..+ . .|..+...++-|+++++..+|.++.+..
T Consensus 11 ~~aR~-~avq~Ly~~~~~~~~~~~~~~~~~~~~~~~~-d~~~~~~~~~~~~~lv~gv~~~~~~iD~~I~~~L 80 (151)
T COG0781 11 RQARE-LAVQALYQWELSGSVSAEDILEDIEEEFVEN-ELDIELADSEYFRSLVKGVLENQEELDELISPHL 80 (151)
T ss_pred HHHHH-HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999-9999999998658832567899999998621-2101453499999999999997999999999988
No 213
>pfam01739 CheR CheR methyltransferase, SAM binding domain. CheR proteins are part of the chemotaxis signaling mechanism in bacteria. CheR methylates the chemotaxis receptor at specific glutamate residues. CheR is an S-adenosylmethionine- dependent methyltransferase - the C-terminal domain (this one) binds SAM.
Probab=87.47 E-value=2.3 Score=22.22 Aligned_cols=110 Identities=24% Similarity=0.241 Sum_probs=60.6
Q ss_pred CCCCEEEECCCCCCHHHHHHHHHHC----C----CCEEHHHHCCHHHHHHHHHHHHH----CCCC---------------
Q ss_conf 6662586013468827999999861----6----88100552498999999999875----0288---------------
Q gi|254780634|r 230 TNSSQILDFCAGGGGKTLALSMLLN----N----KGQIHAWDNNKSRMAPIVARIKR----AGIH--------------- 282 (429)
Q Consensus 230 ~~g~~vLD~CAapGGKt~~la~~~~----~----~g~i~A~D~~~~Rl~~l~~~~~r----~g~~--------------- 282 (429)
.+.-+||=+.|+-|--..-||-++. . +-.|+|.|++..-+...++-.=. .++.
T Consensus 29 ~~~lrIWsagCStGEE~YSlAi~l~e~~~~~~~~~~~I~atDI~~~~l~~Ar~G~Y~~~~~~~~p~~~~~ryF~~~~~~~ 108 (194)
T pfam01739 29 SRRVRIWSAGCSSGEEPYSLAMLLAETLPNALPWDFKILATDIDLSALEKARAGVYPERELEGLPPELLRRYFTKGAGGG 108 (194)
T ss_pred CCCEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHCCCCHHHHHCCCHHHHHHHCCCCCCCC
T ss_conf 99559997368899518999999999743257874499997398899999987898899984599999996286078994
Q ss_pred ---------CCEEEECCCCCCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCE
Q ss_conf ---------60882155434457232467896275445044444223667249678999999878999999996089838
Q gi|254780634|r 283 ---------NVQLHSSWESLRNLQEHFTTVLVDAPCSGTGTWRRRPDIKWRLSQKNLIERTEEQKKILEESAQFVRPEGY 353 (429)
Q Consensus 283 ---------~v~~~~~~~~~~~~~~~fd~vl~DaPCSg~G~~rr~Pe~~w~~~~~~~~~~~~lQ~~iL~~a~~~lk~gG~ 353 (429)
.|.....+....+....||.|+| ||- --.++ ...|.+++.+-...|+|||.
T Consensus 109 ~~i~~~lr~~V~F~~~NL~~~~~~~~~DlIfC-----------RNV--lIYF~-------~~~~~~vl~~l~~~L~~gG~ 168 (194)
T pfam01739 109 YRVKPEIKEMVLFEYHNLLDYPPLGDFDVIFC-----------RNV--LIYFD-------EETQRKILNRFASALKPGGY 168 (194)
T ss_pred EEECHHHHCCCEEEECCCCCCCCCCCEEEEEE-----------CCE--EEECC-------HHHHHHHHHHHHHHHCCCCE
T ss_conf 87688997116685466556887675039998-----------021--01379-------99999999999998489949
Q ss_pred EEEEEC
Q ss_conf 999775
Q gi|254780634|r 354 LVYITC 359 (429)
Q Consensus 354 lvYsTC 359 (429)
|+=...
T Consensus 169 L~lG~~ 174 (194)
T pfam01739 169 LFLGHS 174 (194)
T ss_pred EEEECC
T ss_conf 998075
No 214
>smart00829 PKS_ER Enoylreductase. Enoylreductase in Polyketide synthases.
Probab=87.26 E-value=2.3 Score=22.14 Aligned_cols=94 Identities=19% Similarity=0.264 Sum_probs=54.5
Q ss_pred CCCCCCCEEEE--CCCCCCHHHHHHHHHHCCCCEEHHHHCCHHHHHHHHHHHHHCCCCCCEEEE-CCCC----CC-CCC-
Q ss_conf 36666625860--134688279999998616881005524989999999998750288608821-5543----44-572-
Q gi|254780634|r 227 TAITNSSQILD--FCAGGGGKTLALSMLLNNKGQIHAWDNNKSRMAPIVARIKRAGIHNVQLHS-SWES----LR-NLQ- 297 (429)
Q Consensus 227 l~~~~g~~vLD--~CAapGGKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~-~~~~----~~-~~~- 297 (429)
...++|++||= .|.+=|.=+.++|-.++ .+|++...++.+.+.++ .+|+....+.+ .+.. .. ...
T Consensus 100 ~~i~~g~~VlI~gg~G~vG~~aiqlak~~G--a~Vi~t~~s~~k~~~~~----~lG~~~~~v~~~~~~~~~~~v~~~t~g 173 (288)
T smart00829 100 ARLRPGESVLIHAAAGGVGQAAIQLAQHLG--AEVFATAGSPEKRDFLR----ELGIPDDHIFSSRDLSFADEILRATGG 173 (288)
T ss_pred CCCCCCCEEEEECCCCHHHHHHHHHHHHCC--CCEEEEECCHHHHHHHH----HCCCCCCEEEECCCCCHHHHHHHHHCC
T ss_conf 088999999997898677799999999739--83003408889999999----769996076217995099999987089
Q ss_pred CCCCEEEECCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEE
Q ss_conf 3246789627544504444422366724967899999987899999999608983899
Q gi|254780634|r 298 EHFTTVLVDAPCSGTGTWRRRPDIKWRLSQKNLIERTEEQKKILEESAQFVRPEGYLV 355 (429)
Q Consensus 298 ~~fd~vl~DaPCSg~G~~rr~Pe~~w~~~~~~~~~~~~lQ~~iL~~a~~~lk~gG~lv 355 (429)
..||.|+ | |.| | +.+..+.++|+++|++|
T Consensus 174 ~gvDvv~-d--~vg-g-------------------------~~~~~~~~~l~~~G~~v 202 (288)
T smart00829 174 RGVDVVL-N--SLA-G-------------------------EFLDASLRCLAPGGRFV 202 (288)
T ss_pred CCCEEEE-E--CCC-H-------------------------HHHHHHHHHHCCCCEEE
T ss_conf 8827999-8--986-8-------------------------99999999753698899
No 215
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=87.16 E-value=2.4 Score=22.10 Aligned_cols=107 Identities=22% Similarity=0.241 Sum_probs=61.8
Q ss_pred CCCEEEECCCCCCHHHHHHHHHHCC--------CCEEHHHHCCHHHHHHHHHHH--------------HHC----CC---
Q ss_conf 6625860134688279999998616--------881005524989999999998--------------750----28---
Q gi|254780634|r 231 NSSQILDFCAGGGGKTLALSMLLNN--------KGQIHAWDNNKSRMAPIVARI--------------KRA----GI--- 281 (429)
Q Consensus 231 ~g~~vLD~CAapGGKt~~la~~~~~--------~g~i~A~D~~~~Rl~~l~~~~--------------~r~----g~--- 281 (429)
+.-+||-+.|+-|--..-||-++.. .-+|+|.|++..-+...++-. +|. |-
T Consensus 99 ~~lrIWsagCStGEE~YSlAm~l~e~~~~~~~~~~~I~aTDIs~~~L~~Ar~G~Y~~~~~~~~~~~~~~kyF~~~~~~~~ 178 (264)
T smart00138 99 RRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKYR 178 (264)
T ss_pred CCEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEEECCHHHHHHHHHCCCCHHHHHCCCHHHHHHHCCCCCCEEE
T ss_conf 97489977788882089999999997433489856999983999999999868989899846999999988065698899
Q ss_pred ------CCCEEEECCCCCC-CCCCCCCEEEECCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCEE
Q ss_conf ------8608821554344-572324678962754450444442236672496789999998789999999960898389
Q gi|254780634|r 282 ------HNVQLHSSWESLR-NLQEHFTTVLVDAPCSGTGTWRRRPDIKWRLSQKNLIERTEEQKKILEESAQFVRPEGYL 354 (429)
Q Consensus 282 ------~~v~~~~~~~~~~-~~~~~fd~vl~DaPCSg~G~~rr~Pe~~w~~~~~~~~~~~~lQ~~iL~~a~~~lk~gG~l 354 (429)
..|.....+.... +..+.||.|+| ||-=| .++ ...|.+++..-...|+|||+|
T Consensus 179 v~~~lr~~v~F~~~NL~~~~~~~~~fDlI~C-----------RNVlI--YF~-------~~~~~~vl~~l~~~L~pgG~L 238 (264)
T smart00138 179 VKPELKERVRFAKHNLLAESPPLGDFDLIFC-----------RNVLI--YFD-------EPTQRKLLNRFAEALKPGGYL 238 (264)
T ss_pred ECHHHHCCCCEECCCCCCCCCCCCCCEEEEE-----------CCCEE--ECC-------HHHHHHHHHHHHHHHCCCCEE
T ss_conf 9889985091832789999877788419997-----------63235--459-------999999999999983899399
Q ss_pred EEE
Q ss_conf 997
Q gi|254780634|r 355 VYI 357 (429)
Q Consensus 355 vYs 357 (429)
+=-
T Consensus 239 ~lG 241 (264)
T smart00138 239 FLG 241 (264)
T ss_pred EEE
T ss_conf 982
No 216
>pfam10237 N6-adenineMlase Probable N6-adenine methyltransferase. This is a protein of approximately 200 residues which is conserved from plants to humans. It contains a highly conserved QFW motif close to the N-terminus and a DPPF motif in the centre. The DPPF motif is characteristic of N-6 adenine-specific DNA methylases, and this family is found in eukaryotes.
Probab=86.05 E-value=2.2 Score=22.37 Aligned_cols=55 Identities=24% Similarity=0.320 Sum_probs=37.3
Q ss_pred CCCCCCCEEEECCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHCHHHHHHHH
Q ss_conf 57232467896275445044444223667249678999999878999999996089838999775888242999899999
Q gi|254780634|r 295 NLQEHFTTVLVDAPCSGTGTWRRRPDIKWRLSQKNLIERTEEQKKILEESAQFVRPEGYLVYITCSILPEENIQQINYFL 374 (429)
Q Consensus 295 ~~~~~fd~vl~DaPCSg~G~~rr~Pe~~w~~~~~~~~~~~~lQ~~iL~~a~~~lk~gG~lvYsTCS~~~~Ene~vv~~fL 374 (429)
.+.++||+|++|.|== +++=+. +....+-.++|+||.|+-+| -+|+++.+...|
T Consensus 81 ~l~~~fD~vi~DPPFL---------------seec~~-------K~a~t~~~L~k~~~kli~~T----g~~~~~~~~kll 134 (161)
T pfam10237 81 QLKGKFDRVIADPPFL---------------SEECLT-------KTAITIKLLLKPDSKLLLCT----GERMEDLAAKLL 134 (161)
T ss_pred HHHCCCCEEEECCCCC---------------CHHHHH-------HHHHHHHHHHCCCCEEEEEC----HHHHHHHHHHHC
T ss_conf 9708678899899998---------------999999-------99999999808998799934----899999999972
Q ss_pred H
Q ss_conf 8
Q gi|254780634|r 375 S 375 (429)
Q Consensus 375 ~ 375 (429)
.
T Consensus 135 ~ 135 (161)
T pfam10237 135 G 135 (161)
T ss_pred C
T ss_conf 9
No 217
>KOG0820 consensus
Probab=85.64 E-value=2.8 Score=21.59 Aligned_cols=127 Identities=14% Similarity=0.104 Sum_probs=84.6
Q ss_pred CCCCCCCCCCCEEEECCCCCCHHHHHHHHHHCCCCEEHHHHCCHHHHHHHHHHHHHCCCCC-CEEEECCCCCCCCCCCCC
Q ss_conf 2112366666258601346882799999986168810055249899999999987502886-088215543445723246
Q gi|254780634|r 223 VSNLTAITNSSQILDFCAGGGGKTLALSMLLNNKGQIHAWDNNKSRMAPIVARIKRAGIHN-VQLHSSWESLRNLQEHFT 301 (429)
Q Consensus 223 ~~~~l~~~~g~~vLD~CAapGGKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~-v~~~~~~~~~~~~~~~fd 301 (429)
++.-.+.+|++.||...-|+|.=|.-|.+. ..+|+|+|++++=+..+.++..-.-..+ -++...|.... .-..||
T Consensus 50 I~~ka~~k~tD~VLEvGPGTGnLT~~lLe~---~kkVvA~E~Dprmvael~krv~gtp~~~kLqV~~gD~lK~-d~P~fd 125 (315)
T KOG0820 50 IVEKADLKPTDVVLEVGPGTGNLTVKLLEA---GKKVVAVEIDPRMVAELEKRVQGTPKSGKLQVLHGDFLKT-DLPRFD 125 (315)
T ss_pred HHHCCCCCCCCEEEEECCCCCHHHHHHHHH---CCEEEEEECCCHHHHHHHHHHCCCCCCCEEEEEECCCCCC-CCCCCC
T ss_conf 986047899877999579877899999972---0848999408078999999866998656046885031257-885103
Q ss_pred EEEECCCC--CCCHHHH--HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCH
Q ss_conf 78962754--4504444--42236672496789999998789999999960898389997758882
Q gi|254780634|r 302 TVLVDAPC--SGTGTWR--RRPDIKWRLSQKNLIERTEEQKKILEESAQFVRPEGYLVYITCSILP 363 (429)
Q Consensus 302 ~vl~DaPC--Sg~G~~r--r~Pe~~w~~~~~~~~~~~~lQ~~iL~~a~~~lk~gG~lvYsTCS~~~ 363 (429)
.++-..|- |.-+++. -++.+-|.- ..-+|++ -|.+++..-|-..|+--|++.
T Consensus 126 ~cVsNlPyqISSp~vfKLL~~~~~fr~A-------vlmfQ~E---fa~RLva~pgd~~Ycrlsin~ 181 (315)
T KOG0820 126 GCVSNLPYQISSPLVFKLLLHRPVFRCA-------VLMFQRE---FALRLVARPGDSLYCRLSINV 181 (315)
T ss_pred EEECCCCCCCCCHHHHHHCCCCCCCCEE-------EEEHHHH---HHHHHCCCCCCCHHCEEEHHH
T ss_conf 1122698533678899862788776023-------4402566---655513588984110011113
No 218
>TIGR00091 TIGR00091 tRNA (guanine-N(7)-)-methyltransferase; InterPro: IPR004395 This predicted S-adenosylmethionine-dependent methyltransferase is found in a single copy in most Bacteria . It is also found, with a short amino-terminal extension in eukaryotes. Its function is unknown. In Escherichia coli, this protein flanks the DNA repair protein MutY, also called micA.; GO: 0008168 methyltransferase activity.
Probab=84.94 E-value=1.5 Score=23.42 Aligned_cols=146 Identities=20% Similarity=0.252 Sum_probs=97.9
Q ss_pred CCEEEECCCCCCHHHHHHHHHHCCCCEEHHHHC--------CHHHHHHHHHHHHHCCCC--CCEEEECCCCCCCCCCCCC
Q ss_conf 625860134688279999998616881005524--------989999999998750288--6088215543445723246
Q gi|254780634|r 232 SSQILDFCAGGGGKTLALSMLLNNKGQIHAWDN--------NKSRMAPIVARIKRAGIH--NVQLHSSWESLRNLQEHFT 301 (429)
Q Consensus 232 g~~vLD~CAapGGKt~~la~~~~~~g~i~A~D~--------~~~Rl~~l~~~~~r~g~~--~v~~~~~~~~~~~~~~~fd 301 (429)
.-.+||..+|-|+=-..||.. .++-..+-+|+ +..=+......+.++|+. |+.+-+.|+.... +
T Consensus 20 ~p~~~EIGcG~G~fl~~~A~~-nP~~~flGIE~RvqvtnYv~~p~v~~a~~~~~~~g~~~~Nl~~L~~DA~~l~-----~ 93 (216)
T TIGR00091 20 KPLVLEIGCGKGRFLIKMAKQ-NPDKNFLGIEIRVQVTNYVETPIVLKAINKANKLGLKLRNLHVLCGDANELL-----E 93 (216)
T ss_pred CCEEEEECCCCCCCHHHHHHH-CCCCCEEEEEEEEEEEEEECCCHHHHHHHHHHHHCCCHHHHHHHHCCHHHHH-----H
T ss_conf 544898416876026899772-7997277789998874102272899887557661784421352213602320-----4
Q ss_pred EEEECCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHCHHHHHHHH---HHCC
Q ss_conf 7896275445044444223667249678999999878999999996089838999775888242999899999---8579
Q gi|254780634|r 302 TVLVDAPCSGTGTWRRRPDIKWRLSQKNLIERTEEQKKILEESAQFVRPEGYLVYITCSILPEENIQQINYFL---SKNP 378 (429)
Q Consensus 302 ~vl~DaPCSg~G~~rr~Pe~~w~~~~~~~~~~~~lQ~~iL~~a~~~lk~gG~lvYsTCS~~~~Ene~vv~~fL---~~~~ 378 (429)
.-.-+-|-|-.++.=.-|| -|......- ---+|-.+|..++..|++||.+--.| -|+..-++=| .+++
T Consensus 94 ~~~~~~PP~l~k~f~~FPD-PW~KkRH~K--RR~~~~~Fl~~~~~~L~~~G~i~~~T------D~~~lfE~mL~~l~~~~ 164 (216)
T TIGR00091 94 KFFPDGPPSLSKVFLNFPD-PWPKKRHNK--RRITQPHFLKEVANVLKKGGVIELKT------DNEPLFEDMLKVLSEND 164 (216)
T ss_pred HHHCCCCCCEEEEEEECCC-CCHHHHHCC--CCCCCHHHHHHHHHHCCCCCEEEEEC------CCHHHHHHHHHHHHHCC
T ss_conf 5400789804568887788-951021022--34256789999999704596899970------78467899999996536
Q ss_pred -CCEEEECCCCCCCC
Q ss_conf -97994143002223
Q gi|254780634|r 379 -HFSIDSIIDDWNQL 392 (429)
Q Consensus 379 -~~~~~~~~~~~~~~ 392 (429)
.|....-..++...
T Consensus 165 q~f~~~~~~~dl~~~ 179 (216)
T TIGR00091 165 QLFVIISKNTDLNNS 179 (216)
T ss_pred CCEEEEEECCCCCCC
T ss_conf 412452100222557
No 219
>COG2933 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=84.75 E-value=1.4 Score=23.62 Aligned_cols=70 Identities=19% Similarity=0.182 Sum_probs=47.2
Q ss_pred CCCCCEEEECCCCCCHHHHHHHHHHCCCCEEHHHHCCHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCCEEEECC
Q ss_conf 6666258601346882799999986168810055249899999999987502886088215543445723246789627
Q gi|254780634|r 229 ITNSSQILDFCAGGGGKTLALSMLLNNKGQIHAWDNNKSRMAPIVARIKRAGIHNVQLHSSWESLRNLQEHFTTVLVDA 307 (429)
Q Consensus 229 ~~~g~~vLD~CAapGGKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~~~~~~~~~~~fd~vl~Da 307 (429)
..|||...|+.|+|||=|.+|-. ..-.|+|+|.-+-+ +++--.|. ......+.....+.....|-..||-
T Consensus 209 L~~~M~avDLGAcPGGWTyqLVk---r~m~V~aVDng~ma-----~sL~dtg~-v~h~r~DGfk~~P~r~~idWmVCDm 278 (358)
T COG2933 209 LAPGMWAVDLGACPGGWTYQLVK---RNMRVYAVDNGPMA-----QSLMDTGQ-VTHLREDGFKFRPTRSNIDWMVCDM 278 (358)
T ss_pred HCCCCEEEECCCCCCCCCHHHHH---CCEEEEEECCCHHH-----HHHHCCCC-EEEEECCCCCCCCCCCCCCEEEEEH
T ss_conf 06786564226689862254231---56089994362222-----65632665-2444134730366788775687520
No 220
>PRK11519 tyrosine kinase; Provisional
Probab=84.60 E-value=3.1 Score=21.27 Aligned_cols=118 Identities=12% Similarity=0.197 Sum_probs=59.1
Q ss_pred EEEEECCCCCCC---------CC-CCCCCCCCEEEECCCCCC-HHHHH---HHHHHCCCC-EEHH--HHCCHHHHHHHHH
Q ss_conf 489841556542---------11-236666625860134688-27999---999861688-1005--5249899999999
Q gi|254780634|r 212 WFEIQDEGSQIV---------SN-LTAITNSSQILDFCAGGG-GKTLA---LSMLLNNKG-QIHA--WDNNKSRMAPIVA 274 (429)
Q Consensus 212 ~~~VQD~aSql~---------~~-~l~~~~g~~vLD~CAapG-GKt~~---la~~~~~~g-~i~A--~D~~~~Rl~~l~~ 274 (429)
.+.+.|+.|... .. .....++..|+=.-+.|| |||+. ||..+...| ++.- .|....++...-.
T Consensus 496 ~~~~~~p~s~~~Ea~R~lrt~l~~~~~~~~~~vi~vTS~~pgEGKSt~a~nLA~~~A~~G~rvLLID~DlRrp~l~~~~~ 575 (720)
T PRK11519 496 LLAVGNPTDLAIEAIRSLRTSLHFAMMQAQNNVLMMTGVSPSIGKTFVCANLAAVISQTNKRVLLIDCDMRKGYTHELLG 575 (720)
T ss_pred EEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHCC
T ss_conf 13435998768999999999998744688876799970899997899999999999837991999938777701677539
Q ss_pred HHHHCCCC-------------------CCEEEECCCCC----------------CCCCCCCCEEEECCCC----CCCHHH
Q ss_conf 98750288-------------------60882155434----------------4572324678962754----450444
Q gi|254780634|r 275 RIKRAGIH-------------------NVQLHSSWESL----------------RNLQEHFTTVLVDAPC----SGTGTW 315 (429)
Q Consensus 275 ~~~r~g~~-------------------~v~~~~~~~~~----------------~~~~~~fd~vl~DaPC----Sg~G~~ 315 (429)
.-..-|+. |..+....... ..+...||.|++|.|= |-.=++
T Consensus 576 ~~~~~GLs~~L~g~~~~~~~i~~~~~~~l~vl~~G~~~pnp~elL~s~~~~~ll~~l~~~yD~IIiDtpPv~~v~Da~~l 655 (720)
T PRK11519 576 TNNVNGLSEILIGQGDITTAAKPTSIANFDLIPRGQVPPNPSELLMSERFAELVAWASKNYDLVLIDTPPILAVTDAAIV 655 (720)
T ss_pred CCCCCCHHHHCCCCCCHHHHCCCCCCCCEEEECCCCCCCCHHHHHCCHHHHHHHHHHHHHCCEEEEECCCCCCCHHHHHH
T ss_conf 99999859980799978997035798998997699999498998387599999999985299999939996523589999
Q ss_pred HHHHH-----HHHHCCHHH
Q ss_conf 44223-----667249678
Q gi|254780634|r 316 RRRPD-----IKWRLSQKN 329 (429)
Q Consensus 316 rr~Pe-----~~w~~~~~~ 329 (429)
.++-| +||..|+.+
T Consensus 656 a~~aD~~l~Vvr~g~t~~~ 674 (720)
T PRK11519 656 GRHVGTTLMVARYAVNTLK 674 (720)
T ss_pred HHHCCEEEEEEECCCCCHH
T ss_conf 9978979999989957899
No 221
>pfam01555 N6_N4_Mtase DNA methylase. Members of this family are DNA methylases. The family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases.
Probab=82.71 E-value=1.4 Score=23.58 Aligned_cols=51 Identities=14% Similarity=0.062 Sum_probs=34.7
Q ss_pred CCCCCCCC------CCCCCCEEEECCCCCCHHHHHHHHHHCCCCEEHHHHCCHHHHHHHH
Q ss_conf 65421123------6666625860134688279999998616881005524989999999
Q gi|254780634|r 220 SQIVSNLT------AITNSSQILDFCAGGGGKTLALSMLLNNKGQIHAWDNNKSRMAPIV 273 (429)
Q Consensus 220 Sql~~~~l------~~~~g~~vLD~CAapGGKt~~la~~~~~~g~i~A~D~~~~Rl~~l~ 273 (429)
+|.+..++ -..+|+.|||.+||-|+ +.+|+..-+ -+-+.+|+++.-.+.++
T Consensus 164 t~kP~~L~~~~I~~~s~~gd~VlDpF~GSGT--T~~Aa~~l~-R~~iG~E~~~~y~~~a~ 220 (221)
T pfam01555 164 TQKPEALLERLILASTNPGDIVLDPFAGSGT--TGAAAKELG-RNFIGIEIEEEYVEIAK 220 (221)
T ss_pred CCCCHHHHHHHHHHCCCCCCEEEECCCCCHH--HHHHHHHHC-CEEEEEECCHHHHHHHH
T ss_conf 9895999999999709997999989998279--999999829-95999958999999961
No 222
>PRK10754 quinone oxidoreductase, NADPH-dependent; Provisional
Probab=82.42 E-value=3.8 Score=20.69 Aligned_cols=53 Identities=19% Similarity=0.135 Sum_probs=33.9
Q ss_pred CCCCCCCCEEEEC-CCC-CCHHHHHHHHHHCCCCEEHHHHCCHHHHHHHHHHHHHCCCCCC
Q ss_conf 2366666258601-346-8827999999861688100552498999999999875028860
Q gi|254780634|r 226 LTAITNSSQILDF-CAG-GGGKTLALSMLLNNKGQIHAWDNNKSRMAPIVARIKRAGIHNV 284 (429)
Q Consensus 226 ~l~~~~g~~vLD~-CAa-pGGKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v 284 (429)
....++|++||=. .+| =|.-..++|..++ .++++.+.+++|++.+ +++|...+
T Consensus 135 ~~~~~~g~~vLi~gaaGgVG~~avQlAk~~G--a~Vi~t~~s~~k~e~~----~~lGA~~v 189 (327)
T PRK10754 135 TYEIKPDEQFLFHAAAGGVGLIACQWAKALG--AKLIGTVGSAQKAQRA----LKAGAWQV 189 (327)
T ss_pred CCCCCCCCEEEEECCCCCCCHHHHHHHHHCC--CEEEEEECCHHHHHHH----HHCCCCEE
T ss_conf 1378999999998177611268999999869--9999998989999999----96699999
No 223
>TIGR01425 SRP54_euk signal recognition particle protein SRP54; InterPro: IPR006325 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes , . SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor . In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. This entry represents the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species.; GO: 0005525 GTP binding, 0008312 7S RNA binding, 0006614 SRP-dependent cotranslational protein targeting to membrane, 0048500 signal recognition particle.
Probab=82.28 E-value=2.6 Score=21.84 Aligned_cols=129 Identities=19% Similarity=0.272 Sum_probs=77.4
Q ss_pred CCCCCCCCCCCCCCCCCEEEECCCCCCHHHHHH---HHHHCCCC---EEHHHHCC-HHHHHHHHHHHHHCCCCCCEEEE-
Q ss_conf 155654211236666625860134688279999---99861688---10055249-89999999998750288608821-
Q gi|254780634|r 217 DEGSQIVSNLTAITNSSQILDFCAGGGGKTLAL---SMLLNNKG---QIHAWDNN-KSRMAPIVARIKRAGIHNVQLHS- 288 (429)
Q Consensus 217 D~aSql~~~~l~~~~g~~vLD~CAapGGKt~~l---a~~~~~~g---~i~A~D~~-~~Rl~~l~~~~~r~g~~~v~~~~- 288 (429)
--+++-|+..++.|.- |||+-+ |-+..++| .|++-|.- .-=-..|+.|+.|+++.-+-...
T Consensus 117 ~Kgk~~ViMfVGLQGa-----------GKTTtctKLA~YYk~rGfK~~lvCADTFRAGAFdQLkqNA~kA~iPFYGsy~E 185 (453)
T TIGR01425 117 KKGKSSVIMFVGLQGA-----------GKTTTCTKLAYYYKRRGFKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYLE 185 (453)
T ss_pred CCCCCEEEEEEECCCC-----------CHHHHHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHHCCCCCCCCCCC
T ss_conf 5688215888621488-----------71566878777763266432565177542324899987476448971201048
Q ss_pred ------CCCCCCCC-CCCCCEEEECCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCC
Q ss_conf ------55434457-23246789627544504444422366724967899999987899999999608983899977588
Q gi|254780634|r 289 ------SWESLRNL-QEHFTTVLVDAPCSGTGTWRRRPDIKWRLSQKNLIERTEEQKKILEESAQFVRPEGYLVYITCSI 361 (429)
Q Consensus 289 ------~~~~~~~~-~~~fd~vl~DaPCSg~G~~rr~Pe~~w~~~~~~~~~~~~lQ~~iL~~a~~~lk~gG~lvYsTCS~ 361 (429)
....+..+ .+.||.|||| -|| | ++...+-+.|.. ...+.++|.-++-=.=-||
T Consensus 186 ~DPVkiA~EGv~~Fk~E~~diIivD--TSG-----R-----HkQe~~LF~Em~--------qv~~Ai~Pd~iifVMDGsI 245 (453)
T TIGR01425 186 SDPVKIASEGVEKFKKEKFDIIIVD--TSG-----R-----HKQEEELFEEMV--------QVAEAIKPDSIIFVMDGSI 245 (453)
T ss_pred CCCEEEECCCHHHHHCCCCCEEEEE--CCC-----C-----CHHHHHHHHHHH--------HHHHCCCCCCEEEEECCCH
T ss_conf 9870780020113221278479983--798-----7-----322588889987--------6863349983699806616
Q ss_pred CHHHCHHHHHHHHHHC
Q ss_conf 8242999899999857
Q gi|254780634|r 362 LPEENIQQINYFLSKN 377 (429)
Q Consensus 362 ~~~Ene~vv~~fL~~~ 377 (429)
=.. -|.|.++|=+.-
T Consensus 246 GQA-A~~QAkAFK~~~ 260 (453)
T TIGR01425 246 GQA-AFSQAKAFKDSV 260 (453)
T ss_pred HHH-HHHHHHHHHHCC
T ss_conf 678-899999863003
No 224
>KOG1227 consensus
Probab=82.25 E-value=0.57 Score=26.31 Aligned_cols=82 Identities=15% Similarity=0.029 Sum_probs=59.3
Q ss_pred CCCEEEECCCCCCHHHH-HHHHHHCCCCEEHHHHCCHHHHHHHHHHHHHCCCCCCEEE-ECCCCCCCCCCCCCEEEECCC
Q ss_conf 66258601346882799-9999861688100552498999999999875028860882-155434457232467896275
Q gi|254780634|r 231 NSSQILDFCAGGGGKTL-ALSMLLNNKGQIHAWDNNKSRMAPIVARIKRAGIHNVQLH-SSWESLRNLQEHFTTVLVDAP 308 (429)
Q Consensus 231 ~g~~vLD~CAapGGKt~-~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~-~~~~~~~~~~~~fd~vl~DaP 308 (429)
.|+.|.|+-||=|==|+ .+-. .+.-.|+|+|.+++-++.|+.+++..++...+.. ..+.....+....|+|.+---
T Consensus 194 ~~eviVDLYAGIGYFTlpflV~--agAk~V~A~EwNp~svEaLrR~~~~N~V~~r~~i~~gd~R~~~~~~~AdrVnLGLl 271 (351)
T KOG1227 194 DGEVIVDLYAGIGYFTLPFLVT--AGAKTVFACEWNPWSVEALRRNAEANNVMDRCRITEGDNRNPKPRLRADRVNLGLL 271 (351)
T ss_pred CCCHHHHHHCCCCEEEEEHHHC--CCCCEEEEEECCHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCCHHEEECCC
T ss_conf 6530122342654487402300--57457999945879999999877741157887866510236675532020364345
Q ss_pred CCCCHH
Q ss_conf 445044
Q gi|254780634|r 309 CSGTGT 314 (429)
Q Consensus 309 CSg~G~ 314 (429)
=|..+-
T Consensus 272 PSse~~ 277 (351)
T KOG1227 272 PSSEQG 277 (351)
T ss_pred CCCCCC
T ss_conf 655444
No 225
>PHA02518 ParA-like protein; Provisional
Probab=82.05 E-value=4 Score=20.60 Aligned_cols=133 Identities=17% Similarity=0.155 Sum_probs=63.9
Q ss_pred CHHHH---HHHHHHCCCC-EEHHHHCCHHHHHHHHHHHHHCCCCCCEEEEC----CCCCCCCCCCCCEEEECCCCCCCHH
Q ss_conf 82799---9999861688-10055249899999999987502886088215----5434457232467896275445044
Q gi|254780634|r 243 GGKTL---ALSMLLNNKG-QIHAWDNNKSRMAPIVARIKRAGIHNVQLHSS----WESLRNLQEHFTTVLVDAPCSGTGT 314 (429)
Q Consensus 243 GGKt~---~la~~~~~~g-~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~----~~~~~~~~~~fd~vl~DaPCSg~G~ 314 (429)
=|||+ +||..+...| +|..+|.++..--.---.....+...+..... ........+.||.|++|.|-+-+ .
T Consensus 12 vGKTT~a~nLA~~la~~G~~VlliD~DpQ~s~~~w~~~r~~~~~~~~~~~~~~~~~~~l~~~~~~yD~viID~pp~~~-~ 90 (211)
T PHA02518 12 AGKTTVATNLASWLHADGHKVLLVDLDPQGSSTDWAEAREEGEPLIPVVRMGKSIRADLPKVASGYDYVVVDGAPQDS-E 90 (211)
T ss_pred CHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHCCCCCCCCCHHHCCHHHHHHHHHHCCCCCEEEECCCCCCH-H
T ss_conf 749999999999999789948999779996788999852268997401213677999999740678889988999742-9
Q ss_pred HHHHH----H---HHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCC-EEEE-EECCCCHHHCHHHHHHHHHHCC
Q ss_conf 44422----3---66724967899999987899999999608983-8999-7758882429998999998579
Q gi|254780634|r 315 WRRRP----D---IKWRLSQKNLIERTEEQKKILEESAQFVRPEG-YLVY-ITCSILPEENIQQINYFLSKNP 378 (429)
Q Consensus 315 ~rr~P----e---~~w~~~~~~~~~~~~lQ~~iL~~a~~~lk~gG-~lvY-sTCS~~~~Ene~vv~~fL~~~~ 378 (429)
+-++- | +--.-++-++..+..+...| +. .+.+.++- ...+ .++...+.-....+..+|+...
T Consensus 91 ~~~~al~aaD~vliP~~ps~~d~~~~~~~~~~i-~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~ 161 (211)
T PHA02518 91 LARAALRIADMVLIPVQPSPFDIWAAPDLVELI-KA-RQEVTDGLPKFAFIISRAIKNTQLYREARKALAGYG 161 (211)
T ss_pred HHHHHHHHCCEEEEECCCCHHHHHHHHHHHHHH-HH-HHHHCCCCCEEEEEEECCCCCCHHHHHHHHHHHHCC
T ss_conf 999999958969996378687899999999999-99-998665675168886235866569999999999869
No 226
>KOG1499 consensus
Probab=82.01 E-value=4 Score=20.59 Aligned_cols=112 Identities=11% Similarity=0.145 Sum_probs=70.5
Q ss_pred CCCCCEEEECCCCCCHHHHHHHHHHCCCCEEHHHHCCHHHHHHHHHHHHHCCCCC-CEEEEC---CCCCCCCCCCCCEEE
Q ss_conf 6666258601346882799999986168810055249899999999987502886-088215---543445723246789
Q gi|254780634|r 229 ITNSSQILDFCAGGGGKTLALSMLLNNKGQIHAWDNNKSRMAPIVARIKRAGIHN-VQLHSS---WESLRNLQEHFTTVL 304 (429)
Q Consensus 229 ~~~g~~vLD~CAapGGKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~-v~~~~~---~~~~~~~~~~fd~vl 304 (429)
.-.+..|||.-||-|-=++. ++..+ .-+|+|+|-+.-- ....+.+.-.|+.+ |++... +..++ .++.|.|.
T Consensus 58 lf~dK~VlDVGcGtGILS~F-~akAG-A~~V~aVe~S~ia-~~a~~iv~~N~~~~ii~vi~gkvEdi~LP--~eKVDiIv 132 (346)
T KOG1499 58 LFKDKTVLDVGCGTGILSMF-AAKAG-ARKVYAVEASSIA-DFARKIVKDNGLEDVITVIKGKVEDIELP--VEKVDIIV 132 (346)
T ss_pred HCCCCEEEECCCCCCHHHHH-HHHHC-CCEEEEEECHHHH-HHHHHHHHHCCCCCEEEEEECCEEEEECC--CCCEEEEE
T ss_conf 30797899757881288999-88737-5339999626899-99999998568660599950305787647--55402996
Q ss_pred ECCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHH
Q ss_conf 627544504444422366724967899999987899999999608983899977588824
Q gi|254780634|r 305 VDAPCSGTGTWRRRPDIKWRLSQKNLIERTEEQKKILEESAQFVRPEGYLVYITCSILPE 364 (429)
Q Consensus 305 ~DaPCSg~G~~rr~Pe~~w~~~~~~~~~~~~lQ~~iL~~a~~~lk~gG~lvYsTCS~~~~ 364 (429)
-. -.|. ..-+-..--..|-+-=+.|+|||.+.=++|++.-.
T Consensus 133 SE----WMGy---------------~Ll~EsMldsVl~ARdkwL~~~G~i~P~~a~l~l~ 173 (346)
T KOG1499 133 SE----WMGY---------------FLLYESMLDSVLYARDKWLKEGGLIYPDRATLYLA 173 (346)
T ss_pred EH----HHHH---------------HHHHHHHHHHHHHHHHHCCCCCCEECCCCCEEEEE
T ss_conf 30----1247---------------87776566645533330047795576661137898
No 227
>pfam05891 Hydroxy-O-Methy Putative hydroxyindole-O-methyltransferase. This family of proteins is a putative hydroxyindole-O-methyltransferase and by homology, is expected to catalyse the conversion of N-acetyl serotonin to melatonin. The protein is expressed in the tail neuron PVT and in uterine cells [worm-base].
Probab=81.17 E-value=4.2 Score=20.39 Aligned_cols=102 Identities=17% Similarity=0.253 Sum_probs=68.4
Q ss_pred CEEEECCCCCCHHHHHHHHHHCCCCEEHHHHCCHHHHHHHHHHHHHCCCCCCEEEE-CCCCCCCCCCCCCEEEECCCCCC
Q ss_conf 25860134688279999998616881005524989999999998750288608821-55434457232467896275445
Q gi|254780634|r 233 SQILDFCAGGGGKTLALSMLLNNKGQIHAWDNNKSRMAPIVARIKRAGIHNVQLHS-SWESLRNLQEHFTTVLVDAPCSG 311 (429)
Q Consensus 233 ~~vLD~CAapGGKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~-~~~~~~~~~~~fd~vl~DaPCSg 311 (429)
.+.||+-||=|-=|-++....- ..|-.+|..++=+..+++.+..-+-...++.+ .-....+..++||.|-+- =|.|
T Consensus 57 ~~alDcGAGIGRVTk~lL~~~f--~~VDlVEpv~~Fl~~ak~~l~~~~~~~~~~~~~gLQdf~P~~~~YD~IW~Q-W~~g 133 (217)
T pfam05891 57 LVALDCGAGIGRVTKNLLLPLF--SKVDLVEPVEDFLAKAKEYLAEEKKKVGNFFCVGLQDFTPEEGRYDLIWIQ-WCIG 133 (217)
T ss_pred CEEEECCCCCCEECHHHHHHHC--CEEEEECCCHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCEEEEEEEH-HHHC
T ss_conf 2665426763611266788754--813575444999999999874037976538973610168999817699805-8452
Q ss_pred CHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEE
Q ss_conf 044444223667249678999999878999999996089838999
Q gi|254780634|r 312 TGTWRRRPDIKWRLSQKNLIERTEEQKKILEESAQFVRPEGYLVY 356 (429)
Q Consensus 312 ~G~~rr~Pe~~w~~~~~~~~~~~~lQ~~iL~~a~~~lk~gG~lvY 356 (429)
++|-+|+-+ .|.++...|+|+|.+|-
T Consensus 134 ------------hLtD~dlv~-------Fl~RCk~~L~~~G~Ivv 159 (217)
T pfam05891 134 ------------HLTDEDLVA-------FLKRCKSGLKPNGIIVI 159 (217)
T ss_pred ------------CCCHHHHHH-------HHHHHHHHCCCCCEEEE
T ss_conf ------------188899999-------99999984789864998
No 228
>TIGR00755 ksgA dimethyladenosine transferase; InterPro: IPR011530 This family of proteins represent the rRNA adenine dimethylases (e.g. KsgA). The bacterial enzyme KsgA catalyzes the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In yeast, and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB .; GO: 0016433 rRNA (adenine) methyltransferase activity, 0006364 rRNA processing.
Probab=80.93 E-value=4 Score=20.58 Aligned_cols=121 Identities=15% Similarity=0.169 Sum_probs=79.0
Q ss_pred CCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHCCCCE-EHHHHCCHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCC--
Q ss_conf 54211236666625860134688279999998616881-005524989999999998750288608821554344572--
Q gi|254780634|r 221 QIVSNLTAITNSSQILDFCAGGGGKTLALSMLLNNKGQ-IHAWDNNKSRMAPIVARIKRAGIHNVQLHSSWESLRNLQ-- 297 (429)
Q Consensus 221 ql~~~~l~~~~g~~vLD~CAapGGKt~~la~~~~~~g~-i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~~~~~~~~~-- 297 (429)
+-++..+++++++.||-...|=|.=|..|+++ ... |+|+|+|++=...|+++..--...+..+...|....++.
T Consensus 19 ~~Iv~~~~~~~~~~vlEIGPG~G~LT~~Ll~~---~~~~v~aiEiD~~l~~~L~~~~~~~~~~~~~~i~~Dalk~~~~~~ 95 (277)
T TIGR00755 19 QKIVEAANVLENDVVLEIGPGLGALTEPLLKR---AKKLVTAIEIDPRLAEILRKLLSEKLYENLEVIEGDALKVDLNSL 95 (277)
T ss_pred HHHHHHHCCCCCCEEEEECCCCHHHHHHHHHH---CCCEEEEEEECHHHHHHHHHHCCCCCCCCEEEEECCEEEECCCHH
T ss_conf 99999743789977999738820789999982---598489997267899998752154332425787144454123204
Q ss_pred CCCC-----EEEECCCCCCCHHHHHHHHHHHHCCHHHHHHHHH-------------HHHHHHHHHHHHHCCCCEEEEEEC
Q ss_conf 3246-----7896275445044444223667249678999999-------------878999999996089838999775
Q gi|254780634|r 298 EHFT-----TVLVDAPCSGTGTWRRRPDIKWRLSQKNLIERTE-------------EQKKILEESAQFVRPEGYLVYITC 359 (429)
Q Consensus 298 ~~fd-----~vl~DaPCSg~G~~rr~Pe~~w~~~~~~~~~~~~-------------lQ~~iL~~a~~~lk~gG~lvYsTC 359 (429)
..|+ +|+-== -|+.+..-+..|.. +|+++ |-+++..-|.=-|+-=
T Consensus 96 ~~~~~~~~~~vv~NL--------------PY~Issp~~~~Ll~~~~~~~~~~~vlM~QkEv---A~Rl~A~p~sk~Yg~L 158 (277)
T TIGR00755 96 EDFPKEDKLKVVSNL--------------PYNISSPLIFKLLKEEEKPKFRLAVLMVQKEV---AERLTAKPGSKDYGRL 158 (277)
T ss_pred HHCCCCCCCEEEEEC--------------CCCHHHHHHHHHHHHHCCCCCCEEEEEEEHHH---HHHHCCCCCCCCCHHH
T ss_conf 331678985798507--------------74324899999998613644477788742677---7765189998410069
Q ss_pred CC
Q ss_conf 88
Q gi|254780634|r 360 SI 361 (429)
Q Consensus 360 S~ 361 (429)
|+
T Consensus 159 SV 160 (277)
T TIGR00755 159 SV 160 (277)
T ss_pred HH
T ss_conf 88
No 229
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=79.90 E-value=4.7 Score=20.12 Aligned_cols=129 Identities=14% Similarity=0.219 Sum_probs=76.8
Q ss_pred CCCCCCEEEECCCCCCHHHHHHHHHHCCCCEEHHHHCCHHHHHHHHHHHHHCCCCCCEEEEC-CCCCC-CCCCCCCEEEE
Q ss_conf 66666258601346882799999986168810055249899999999987502886088215-54344-57232467896
Q gi|254780634|r 228 AITNSSQILDFCAGGGGKTLALSMLLNNKGQIHAWDNNKSRMAPIVARIKRAGIHNVQLHSS-WESLR-NLQEHFTTVLV 305 (429)
Q Consensus 228 ~~~~g~~vLD~CAapGGKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~-~~~~~-~~~~~fd~vl~ 305 (429)
+..+=.++||+.||-|=---.|-.+.. +++-+|+|.+=+.+..+. |+-..-.... ..... ...++||.|-
T Consensus 122 ~~g~F~~~lDLGCGTGL~G~~lR~~a~---~ltGvDiS~nMl~kA~eK----g~YD~L~~Aea~~Fl~~~~~er~DLi~- 193 (287)
T COG4976 122 DLGPFRRMLDLGCGTGLTGEALRDMAD---RLTGVDISENMLAKAHEK----GLYDTLYVAEAVLFLEDLTQERFDLIV- 193 (287)
T ss_pred CCCCCCEEEECCCCCCCCCHHHHHHHH---HCCCCCHHHHHHHHHHHC----CCHHHHHHHHHHHHHHHCCCCCCCCHH-
T ss_conf 577620234426676766276788886---512776269999998862----415788898999875522677643012-
Q ss_pred CCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHH------------CHHHHHHH
Q ss_conf 275445044444223667249678999999878999999996089838999775888242------------99989999
Q gi|254780634|r 306 DAPCSGTGTWRRRPDIKWRLSQKNLIERTEEQKKILEESAQFVRPEGYLVYITCSILPEE------------NIQQINYF 373 (429)
Q Consensus 306 DaPCSg~G~~rr~Pe~~w~~~~~~~~~~~~lQ~~iL~~a~~~lk~gG~lvYsTCS~~~~E------------ne~vv~~f 373 (429)
..|+.-+..-=-.++--++.+|+|||.+.+|.=|+.-+- .|.-|...
T Consensus 194 ---------------------AaDVl~YlG~Le~~~~~aa~~L~~gGlfaFSvE~l~~~~~f~l~ps~RyAH~~~YVr~~ 252 (287)
T COG4976 194 ---------------------AADVLPYLGALEGLFAGAAGLLAPGGLFAFSVETLPDDGGFVLGPSQRYAHSESYVRAL 252 (287)
T ss_pred ---------------------HHHHHHHHCCHHHHHHHHHHHCCCCCEEEEEECCCCCCCCEECCHHHHHCCCHHHHHHH
T ss_conf ---------------------45678864003468999998558986489872316777873216465322522899999
Q ss_pred HHHCCCCEEEECC
Q ss_conf 9857997994143
Q gi|254780634|r 374 LSKNPHFSIDSII 386 (429)
Q Consensus 374 L~~~~~~~~~~~~ 386 (429)
|+. .+|+++.+.
T Consensus 253 l~~-~Gl~~i~~~ 264 (287)
T COG4976 253 LAA-SGLEVIAIE 264 (287)
T ss_pred HHH-CCCEEEEEE
T ss_conf 974-596278742
No 230
>COG1568 Predicted methyltransferases [General function prediction only]
Probab=79.87 E-value=2.2 Score=22.35 Aligned_cols=55 Identities=16% Similarity=0.163 Sum_probs=44.7
Q ss_pred CEEHHHHCCHHHHHHHHHHHHHCCCCCCEEEECCCCC---CCCCCCCCEEEECCCCCC
Q ss_conf 8100552498999999999875028860882155434---457232467896275445
Q gi|254780634|r 257 GQIHAWDNNKSRMAPIVARIKRAGIHNVQLHSSWESL---RNLQEHFTTVLVDAPCSG 311 (429)
Q Consensus 257 g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~~~~~---~~~~~~fd~vl~DaPCSg 311 (429)
-+|..+|+++.=++-+.+-++.+|+.|+++...|..- ..+.++||..+-|+|-+=
T Consensus 176 k~iaVvDIDERli~fi~k~aee~g~~~ie~~~~Dlr~plpe~~~~kFDvfiTDPpeTi 233 (354)
T COG1568 176 KRIAVVDIDERLIKFIEKVAEELGYNNIEAFVFDLRNPLPEDLKRKFDVFITDPPETI 233 (354)
T ss_pred CEEEEEECHHHHHHHHHHHHHHHCCCCHHHEEEHHCCCCHHHHHHHCCEEECCCHHHH
T ss_conf 3379983158999999999998483315540305104583988850776435963357
No 231
>PRK13771 putative alcohol dehydrogenase; Provisional
Probab=79.63 E-value=4.7 Score=20.06 Aligned_cols=109 Identities=18% Similarity=0.216 Sum_probs=61.0
Q ss_pred CCCCCCCCEEEECCC-CCCHHHH-HHHHHHCCCCEEHHHHCCHHHHHHHHHHHHHCCCCCCEEEECC--CCCCCCCCCCC
Q ss_conf 236666625860134-6882799-9999861688100552498999999999875028860882155--43445723246
Q gi|254780634|r 226 LTAITNSSQILDFCA-GGGGKTL-ALSMLLNNKGQIHAWDNNKSRMAPIVARIKRAGIHNVQLHSSW--ESLRNLQEHFT 301 (429)
Q Consensus 226 ~l~~~~g~~vLD~CA-apGGKt~-~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~~--~~~~~~~~~fd 301 (429)
....++|++||=.-| |+.|-.. ++|..++ .++++.+.++.|++.+++ .+.+ .+.... ...... +.+|
T Consensus 157 ~~~~~~g~~VlI~Ga~G~vG~~aiqlak~~G--a~vi~v~~~~~k~~~~~~----~~~~--~i~~~~~~~~~~~~-~g~D 227 (332)
T PRK13771 157 RAGVSEGETVLVTGAGGGVGIHAVQVAKAYG--AKVIAVTTSESKAKAVGK----YADY--VIVGSKFSEEVKKL-GGAD 227 (332)
T ss_pred HHCCCCCCEEEEECCCCHHHHHHHHHHHHCC--CEEEEEECCHHHHHHHHH----CCCE--EEECCCHHHHHHHC-CCCC
T ss_conf 7199999999997787758999999999869--989999499999999985----6998--98363057888734-6863
Q ss_pred EEEECCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHCHHHHHHH
Q ss_conf 789627544504444422366724967899999987899999999608983899977588824299989999
Q gi|254780634|r 302 TVLVDAPCSGTGTWRRRPDIKWRLSQKNLIERTEEQKKILEESAQFVRPEGYLVYITCSILPEENIQQINYF 373 (429)
Q Consensus 302 ~vl~DaPCSg~G~~rr~Pe~~w~~~~~~~~~~~~lQ~~iL~~a~~~lk~gG~lvYsTCS~~~~Ene~vv~~f 373 (429)
.|+ | |+|.- .+..++++|++||+++..- ++.+.+.+--...+
T Consensus 228 vvi-d--~~G~~--------------------------~~~~~~~~l~~~G~iv~~G-~~~~~~~~~~~~~~ 269 (332)
T PRK13771 228 IVI-E--TVGGP--------------------------TLEESLRSLNWGGKIVLIG-NVDPSPASLRLGLL 269 (332)
T ss_pred EEE-E--CCCHH--------------------------HHHHHHHHHCCCCEEEEEE-CCCCCCCCCCHHHH
T ss_conf 898-4--57668--------------------------8998888625896999993-45787576458999
No 232
>KOG2078 consensus
Probab=79.37 E-value=0.97 Score=24.75 Aligned_cols=60 Identities=18% Similarity=0.152 Sum_probs=45.5
Q ss_pred CCCCCEEEECCCCCCHHHHHHHHHHCCCCEEHHHHCCHHHHHHHHHHHHHCCC--CCCEEEECCC
Q ss_conf 66662586013468827999999861688100552498999999999875028--8608821554
Q gi|254780634|r 229 ITNSSQILDFCAGGGGKTLALSMLLNNKGQIHAWDNNKSRMAPIVARIKRAGI--HNVQLHSSWE 291 (429)
Q Consensus 229 ~~~g~~vLD~CAapGGKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~--~~v~~~~~~~ 291 (429)
-++|+.|-|+|||-|-=++-. ..++ -+|+|+|.++.-++-|+.|+.--.+ .++++.+-++
T Consensus 247 fk~gevv~D~FaGvGPfa~Pa--~kK~-crV~aNDLNpesik~Lk~ni~lNkv~~~~iei~Nmda 308 (495)
T KOG2078 247 FKPGEVVCDVFAGVGPFALPA--AKKG-CRVYANDLNPESIKWLKANIKLNKVDPSAIEIFNMDA 308 (495)
T ss_pred CCCCCHHHHHHCCCCCCCCCH--HHCC-CEEEECCCCHHHHHHHHHHCCCCCCCHHHEEEECCCH
T ss_conf 587413344404767433502--2258-5899347997899999975653665613636644618
No 233
>PRK01581 speE spermidine synthase; Validated
Probab=78.74 E-value=5 Score=19.88 Aligned_cols=114 Identities=18% Similarity=0.157 Sum_probs=67.3
Q ss_pred CCCCEEEECCCCCCHHHHHHHHHHCC--CCEEHHHHCCHHHHHHHHHH--HHHCCC---C--CCEEEECCC--CCCCCCC
Q ss_conf 66625860134688279999998616--88100552498999999999--875028---8--608821554--3445723
Q gi|254780634|r 230 TNSSQILDFCAGGGGKTLALSMLLNN--KGQIHAWDNNKSRMAPIVAR--IKRAGI---H--NVQLHSSWE--SLRNLQE 298 (429)
Q Consensus 230 ~~g~~vLD~CAapGGKt~~la~~~~~--~g~i~A~D~~~~Rl~~l~~~--~~r~g~---~--~v~~~~~~~--~~~~~~~ 298 (429)
....+||=+..|-|.- +-+.++- .-.|+-+|+++.=++..+.+ +.++.- . -+.+...|+ .+....+
T Consensus 138 ~~~~rVLILGGGDGLA---lREVLKyp~Ve~VTLVDLDP~mt~Lar~~p~L~~LN~~AL~DPRV~Vvn~DAf~wL~~~~~ 214 (363)
T PRK01581 138 IDPKRVLILGGGDGLA---LREVLKYETVLHVDLVDLDGSMIDMARNVPELVSLNKSAFFDNRVNTHVCDAKEFLSSPSS 214 (363)
T ss_pred CCCCEEEEEECCCHHH---HHHHHCCCCCCEEEEEECCHHHHHHHHHCHHHHHHHHHHCCCCCEEEEECCHHHHHHCCCC
T ss_conf 8877389980764399---9998717985627899569999998751979987512001498049992108999861675
Q ss_pred CCCEEEECCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCH
Q ss_conf 24678962754450444442236672496789999998789999999960898389997758882
Q gi|254780634|r 299 HFTTVLVDAPCSGTGTWRRRPDIKWRLSQKNLIERTEEQKKILEESAQFVRPEGYLVYITCSILP 363 (429)
Q Consensus 299 ~fd~vl~DaPCSg~G~~rr~Pe~~w~~~~~~~~~~~~lQ~~iL~~a~~~lk~gG~lvYsTCS~~~ 363 (429)
.||.|++|-|=-..=.+. |. +..-=..++ .+.|.|+|.+|--.-|..-
T Consensus 215 ~FDvIIVDlPDP~n~~L~-----KL---------YS~eFY~Ll---~~~La~dG~~vVQSTSPyf 262 (363)
T PRK01581 215 LYDVIIIDFPDPATELLS-----TL---------YTSELFARI---ATFLTEDGAFVCQSNSPAD 262 (363)
T ss_pred CCCEEEEECCCCCCHHHH-----HH---------HHHHHHHHH---HHHCCCCCEEEEEECCCCC
T ss_conf 442899958999862466-----67---------359999999---9861988539996079765
No 234
>pfam01234 NNMT_PNMT_TEMT NNMT/PNMT/TEMT family.
Probab=78.61 E-value=5.1 Score=19.85 Aligned_cols=178 Identities=16% Similarity=0.149 Sum_probs=81.5
Q ss_pred CCCCCEEEECCCCCCHHHHHHHHHHCCCCEEHHHHCCHHHHHHHHHHHHHC-CCCCC----E----EEECCCC----CCC
Q ss_conf 666625860134688279999998616881005524989999999998750-28860----8----8215543----445
Q gi|254780634|r 229 ITNSSQILDFCAGGGGKTLALSMLLNNKGQIHAWDNNKSRMAPIVARIKRA-GIHNV----Q----LHSSWES----LRN 295 (429)
Q Consensus 229 ~~~g~~vLD~CAapGGKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~-g~~~v----~----~~~~~~~----~~~ 295 (429)
-..|++.||.-+||---.+.-|...- -.|+..|..+.-.+.+.+=++.- |.... + +...... -..
T Consensus 54 ~~kg~~LiDvG~GPtiy~~lsA~~~f--~~I~lsDy~~~Nr~el~kWl~~ep~afDWs~~~~~v~~lEG~~~~~~e~ee~ 131 (261)
T pfam01234 54 GVKGDTLIDIGSGPTIYQLLSACEVF--KEIHLSDYLPQNRDELIKWLKKEPGAFDWSPVLKHICELEGDRECWQEKEEK 131 (261)
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHC--CEEEECCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCCCHHHHHHH
T ss_conf 74666899847894588887677650--7178602557679999999706998666619999998622676415788899
Q ss_pred CCCCC-CEEEECCCCCC---CHHHHHHHHHHHH-CCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEC------CCC--
Q ss_conf 72324-67896275445---0444442236672-49678999999878999999996089838999775------888--
Q gi|254780634|r 296 LQEHF-TTVLVDAPCSG---TGTWRRRPDIKWR-LSQKNLIERTEEQKKILEESAQFVRPEGYLVYITC------SIL-- 362 (429)
Q Consensus 296 ~~~~f-d~vl~DaPCSg---~G~~rr~Pe~~w~-~~~~~~~~~~~lQ~~iL~~a~~~lk~gG~lvYsTC------S~~-- 362 (429)
+.... +.+-+|+-=+. .+.....-|.-+. .--+..-+-..-=+.-+.+...+|||||.||++-. ++-
T Consensus 132 lR~~Ik~Vl~cDV~~~~pl~~~~~lp~~D~v~S~~cLE~ac~d~~~Y~~av~ni~~LLkpGG~Lil~gvl~~t~Y~vG~~ 211 (261)
T pfam01234 132 LRALVKRVLKCDVHQSPPLGAGVQLPPADCVVTIFCLEYACPDLEEYCRALRNLASLLKPGGHLVLGGVLEESWYMFGEK 211 (261)
T ss_pred HHHHHHEEEECCCCCCCCCCCCCCCCCCCEEEEEEEHHHHCCCHHHHHHHHHHHHHHCCCCCEEEEEEECCCCEEEECCE
T ss_conf 99886448876556888888866678855884762255661999999999999986478884699998617734887898
Q ss_pred ----HHHCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCEEEEEEEEE
Q ss_conf ----24299989999985799799414300222345555555567698499804479862158999962
Q gi|254780634|r 363 ----PEENIQQINYFLSKNPHFSIDSIIDDWNQLYDLKNHPSLFIENGCCVLTPFLTNTDGFFFCRLKR 427 (429)
Q Consensus 363 ----~~Ene~vv~~fL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~dGff~a~l~k 427 (429)
--=||+.|...|.+. +|.++..... +. +..-...+.||+|+..=||
T Consensus 212 ~F~~l~l~ee~v~~Al~~a-G~~i~~~~~~-~~-----------------~~~~~~~d~~~~f~l~arK 261 (261)
T pfam01234 212 KFSCLYLSKEVVEDALVDA-GLDVEALQIM-PQ-----------------SYSYKVADHDGVFFLVARK 261 (261)
T ss_pred ECCEEECCHHHHHHHHHHC-CCEEEEEEEE-CC-----------------CCCCCCCCCCCEEEEEEEC
T ss_conf 6022522899999999977-9778997862-24-----------------3577644667449999829
No 235
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=78.58 E-value=3.4 Score=21.08 Aligned_cols=141 Identities=19% Similarity=0.236 Sum_probs=76.9
Q ss_pred CCCCCEEEECCCCCC-HHHHHHHHHH---CCCC--EEHHHHCCHHHHHHHHHHHHHCCCCCCEEEEC-------------
Q ss_conf 666625860134688-2799999986---1688--10055249899999999987502886088215-------------
Q gi|254780634|r 229 ITNSSQILDFCAGGG-GKTLALSMLL---NNKG--QIHAWDNNKSRMAPIVARIKRAGIHNVQLHSS------------- 289 (429)
Q Consensus 229 ~~~g~~vLD~CAapG-GKt~~la~~~---~~~g--~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~------------- 289 (429)
.+.|-.+|.+-++|| |||+.|-... +++- -|+-.|+...+ =.+|+++.|+..+++.+.
T Consensus 100 ~~~gv~~lNl~sSPGSGKTtLLe~ti~~L~~~~~~aVIeGD~~T~~---DA~RI~~~Gv~avQInTG~~CHLDA~MV~~a 176 (290)
T PRK10463 100 AARKQLVLNLVSSPGSGKTTLLTETLMRLKDSVPCAVIEGDQQTVN---DAARIRATGTPAIQVNTGKGCHLDAQMIADA 176 (290)
T ss_pred HHCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCHH---HHHHHHHCCCCEEEECCCCCCCCCHHHHHHH
T ss_conf 9879189993069987889999999998733675799960423566---7999997699589954799767599999999
Q ss_pred ----------------CCC-----CCCCCCCCCEEEECCCCCCCHHHHHHHHHHH-----HCCHHHHHHHHHHHHHHHHH
Q ss_conf ----------------543-----4457232467896275445044444223667-----24967899999987899999
Q gi|254780634|r 290 ----------------WES-----LRNLQEHFTTVLVDAPCSGTGTWRRRPDIKW-----RLSQKNLIERTEEQKKILEE 343 (429)
Q Consensus 290 ----------------~~~-----~~~~~~~fd~vl~DaPCSg~G~~rr~Pe~~w-----~~~~~~~~~~~~lQ~~iL~~ 343 (429)
-.. .+.+.+.+..|++-+| -|.-.--|.|.+-- -++.-|+..+.....+....
T Consensus 177 l~~l~l~~~dllfIENVGNLVCPA~FDLGE~~kVvvlSVt-EGeDKPlKYP~mF~~ad~vlinKiDLlp~~dFD~~~~~~ 255 (290)
T PRK10463 177 APRLPLDDNGILFIENVGNLVCPASFDLGEKHKVAVLSVT-EGEDKPLKYPHMFAAASLMLLNKVDLLPYLNFDVEKCIA 255 (290)
T ss_pred HHHCCCCCCCEEEEECCCCCCCCCCCCCCCCEEEEEEEEC-CCCCCCCCCHHHHHHCCEEEEEHHHHHHHCCCCHHHHHH
T ss_conf 9848987798999812788435512036776179999706-888864447667642578998656512202889999999
Q ss_pred HHHHHCCCCEEEEEECCCCHHHCHHHHHHHHH
Q ss_conf 99960898389997758882429998999998
Q gi|254780634|r 344 SAQFVRPEGYLVYITCSILPEENIQQINYFLS 375 (429)
Q Consensus 344 a~~~lk~gG~lvYsTCS~~~~Ene~vv~~fL~ 375 (429)
.++.+.|+-.++-.-| ..-|+-+.--.+|+
T Consensus 256 ~~~~vNp~~~v~~vSa--~tGeGld~W~~WL~ 285 (290)
T PRK10463 256 CAREVNPEIEIILISA--TSGEGMDQWLNWLE 285 (290)
T ss_pred HHHHHCCCCCEEEEEC--CCCCCHHHHHHHHH
T ss_conf 9998698985899756--88878999999999
No 236
>KOG3115 consensus
Probab=77.69 E-value=5.4 Score=19.68 Aligned_cols=137 Identities=19% Similarity=0.180 Sum_probs=80.3
Q ss_pred CCEEEECCCCCCHHHHHHHHHHCCCCEEHHHHCCHHHHHHHHHHHHHCC-------CCCCEEEE-C-CCCCCCC--CCCC
Q ss_conf 6258601346882799999986168810055249899999999987502-------88608821-5-5434457--2324
Q gi|254780634|r 232 SSQILDFCAGGGGKTLALSMLLNNKGQIHAWDNNKSRMAPIVARIKRAG-------IHNVQLHS-S-WESLRNL--QEHF 300 (429)
Q Consensus 232 g~~vLD~CAapGGKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g-------~~~v~~~~-~-~~~~~~~--~~~f 300 (429)
.-...|..||=||=..-|+.+...+ .|+..+|.-+-..-.++++.-++ +.|+.+.- + ...++.+ .+..
T Consensus 61 kvefaDIGCGyGGLlv~Lsp~fPdt-LiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~namk~lpn~f~kgqL 139 (249)
T KOG3115 61 KVEFADIGCGYGGLLMKLAPKFPDT-LILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVLRTNAMKFLPNFFEKGQL 139 (249)
T ss_pred CCEEEEECCCCCCHHHHCCCCCCCC-EEEEEHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEECCCHHHCCCHHHHCCC
T ss_conf 6427860467650101205468630-122001268888999999999752654334565303421202205103431233
Q ss_pred CEEEECCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHCHHHHHHHHHHCCCC
Q ss_conf 67896275445044444223667249678999999878999999996089838999775888242999899999857997
Q gi|254780634|r 301 TTVLVDAPCSGTGTWRRRPDIKWRLSQKNLIERTEEQKKILEESAQFVRPEGYLVYITCSILPEENIQQINYFLSKNPHF 380 (429)
Q Consensus 301 d~vl~DaPCSg~G~~rr~Pe~~w~~~~~~~~~~~~lQ~~iL~~a~~~lk~gG~lvYsTCS~~~~Ene~vv~~fL~~~~~~ 380 (429)
+....- -.+|.-|-+..+ -.-.+..++...+-.|++||.+.++| ..+|--+---.-+++||-|
T Consensus 140 skmff~---------fpdpHfk~~khk-----~rii~~~l~~eyay~l~~gg~~ytit---Dv~elh~wm~~~~e~hplf 202 (249)
T KOG3115 140 SKMFFL---------FPDPHFKARKHK-----WRIITSTLLSEYAYVLREGGILYTIT---DVKELHEWMVKHLEEHPLF 202 (249)
T ss_pred CCCEEE---------CCCHHHHHHHCC-----CEEECHHHHHHHHHHHHCCCEEEEEE---EHHHHHHHHHHHHHHCCHH
T ss_conf 444032---------588057665212-----10120347987774221384489970---0888899999988727476
Q ss_pred EEEECC
Q ss_conf 994143
Q gi|254780634|r 381 SIDSII 386 (429)
Q Consensus 381 ~~~~~~ 386 (429)
+...-.
T Consensus 203 e~lt~e 208 (249)
T KOG3115 203 ERLTEE 208 (249)
T ss_pred HHCCHH
T ss_conf 521345
No 237
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=77.34 E-value=5.5 Score=19.61 Aligned_cols=108 Identities=21% Similarity=0.138 Sum_probs=63.1
Q ss_pred EEECCCCCCHHHHHHHHHHCCCCEEHHHHCCHHHHHHHHHHHHHCCCCCCEEEECCCC--CCCCC--CCCCEEEECCCCC
Q ss_conf 8601346882799999986168810055249899999999987502886088215543--44572--3246789627544
Q gi|254780634|r 235 ILDFCAGGGGKTLALSMLLNNKGQIHAWDNNKSRMAPIVARIKRAGIHNVQLHSSWES--LRNLQ--EHFTTVLVDAPCS 310 (429)
Q Consensus 235 vLD~CAapGGKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~~~~--~~~~~--~~fd~vl~DaPCS 310 (429)
++|.++|.|.-+ .++........+++.|++..-+........+.+..++.....+.. ..+.. ..||.+ |+
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~-----~~ 125 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEGAGLGLVDFVVADALGGVLPFEDSASFDLV-----IS 125 (257)
T ss_pred EEEEECCCCHHH-HHHHHHCCCCEEEEECCCHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCCCEEEEE-----EE
T ss_conf 588603854689-999973578579993688899999998630045663576760421355675666657789-----86
Q ss_pred CCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHC
Q ss_conf 50444442236672496789999998789999999960898389997758882429
Q gi|254780634|r 311 GTGTWRRRPDIKWRLSQKNLIERTEEQKKILEESAQFVRPEGYLVYITCSILPEEN 366 (429)
Q Consensus 311 g~G~~rr~Pe~~w~~~~~~~~~~~~lQ~~iL~~a~~~lk~gG~lvYsTCS~~~~En 366 (429)
..... |. . ....+....+.++|+|.++.++........
T Consensus 126 ~~~~~-------~~-~----------~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~ 163 (257)
T COG0500 126 LLVLH-------LL-P----------PAKALRELLRVLKPGGRLVLSDLLRDGLLE 163 (257)
T ss_pred CCHHH-------HH-H----------HHHHHHHHHHHCCCCCEEEEEECCCCCCCC
T ss_conf 12344-------30-2----------899999999870788689999624444321
No 238
>PRK11630 hypothetical protein; Provisional
Probab=76.76 E-value=4.2 Score=20.43 Aligned_cols=42 Identities=7% Similarity=0.086 Sum_probs=17.7
Q ss_pred CCCCCHHHHCCCHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 367912350899889999998574489999998628986111247
Q gi|254780634|r 116 ENAPLHIQGNIPQWLQSSFQSYFKDTWLKEAKSLSMRAPLDLRTN 160 (429)
Q Consensus 116 ~~~~~~i~~s~P~WL~~~~~~~~ge~~~~~l~a~~~~~pl~iRvN 160 (429)
.+.++.+..+-.+++. .+. ...+.+..+++.+ -|-|+++=+.
T Consensus 61 ~~kpl~ll~~~~~~~~-~~~-~~~~~~~~l~~~~-wPGplT~Il~ 102 (206)
T PRK11630 61 DGHNFTLMCRDLSELS-TYS-YVDNVAFRLMKNN-TPGNYTFILK 102 (206)
T ss_pred CCCCCCEECCCHHHHH-HHC-CCCHHHHHHHHHC-CCCCEEEEEE
T ss_conf 7898621348999999-772-5899999999846-9998489850
No 239
>pfam09243 Rsm22 Mitochondrial small ribosomal subunit Rsm22. Rsm22 has been identified as a mitochondrial small ribosomal subunit and is a methyltransferase. In Schizosaccharomyces pombe, Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria.
Probab=76.56 E-value=5.8 Score=19.47 Aligned_cols=73 Identities=18% Similarity=-0.013 Sum_probs=42.4
Q ss_pred CCEEEECCCCCCHHHHHHHHHHCCCCEEHHHHCCHHHHHHHHHHHHHCCCCCCEE--EECCCCCCCCCCCCCEEEE
Q ss_conf 6258601346882799999986168810055249899999999987502886088--2155434457232467896
Q gi|254780634|r 232 SSQILDFCAGGGGKTLALSMLLNNKGQIHAWDNNKSRMAPIVARIKRAGIHNVQL--HSSWESLRNLQEHFTTVLV 305 (429)
Q Consensus 232 g~~vLD~CAapGGKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~--~~~~~~~~~~~~~fd~vl~ 305 (429)
..+|||+-||||.=+....+.+..--.++++|.++.=++..+ ++.+.+..+... .............+|.|++
T Consensus 35 P~slLD~GsGpGt~~wAa~~~w~~l~~~~~vd~s~~m~~l~~-~L~~~~~~~~~~~~~~~~~~~~~~~~~~DLVi~ 109 (275)
T pfam09243 35 PLSHLDVGAGPGTALWAASELWPGLEPATVIDASEAALAIGE-ELARHIPALKHAWRARDVIGAALDFEPADLVTI 109 (275)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHH-HHHHCCCCCCCCEECCCCCCCCCCCCCCCEEEE
T ss_conf 875777277579999999988424768999748999999999-998518434543111431011245898788996
No 240
>PRK05876 short chain dehydrogenase; Provisional
Probab=76.50 E-value=5.8 Score=19.46 Aligned_cols=50 Identities=14% Similarity=0.155 Sum_probs=27.8
Q ss_pred CCEEEECCCCCCHHHHHHHHHHC-CCCEEHHHHCCHHHHHHHHHHHHHCCCC
Q ss_conf 62586013468827999999861-6881005524989999999998750288
Q gi|254780634|r 232 SSQILDFCAGGGGKTLALSMLLN-NKGQIHAWDNNKSRMAPIVARIKRAGIH 282 (429)
Q Consensus 232 g~~vLD~CAapGGKt~~la~~~~-~~g~i~A~D~~~~Rl~~l~~~~~r~g~~ 282 (429)
|..++=.-||.| ==..+|..+. ....|+..|++..+++...+.+...|..
T Consensus 6 gKvavITGaasG-IG~a~A~~la~~Ga~Vvi~d~~~~~l~~~~~~l~~~g~~ 56 (275)
T PRK05876 6 GRGAVITGGASG-IGLATGTEFARRGARVVLGDVDKPGLRQAVNHLRAEGFD 56 (275)
T ss_pred CCEEEEECCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCC
T ss_conf 987999282669-999999999987998999979889999999999826984
No 241
>TIGR00740 TIGR00740 methyltransferase, putative; InterPro: IPR005271 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order . Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI ), shared by other AdoMet-Mtases , is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments , although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases , , , . The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences . The proteins of this family are restricted to the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 0dentity. It is reasonable to predict equivalent function within this subfamily. .
Probab=76.45 E-value=5.8 Score=19.45 Aligned_cols=145 Identities=17% Similarity=0.109 Sum_probs=87.5
Q ss_pred EECCCCCCCCCCC-----C-CCCCCEEEECCCCCCHHHHHHHHHHCC-CCEEHHHHCCHHHHHHHHHHHHHCCCC-CCEE
Q ss_conf 8415565421123-----6-666625860134688279999998616-881005524989999999998750288-6088
Q gi|254780634|r 215 IQDEGSQIVSNLT-----A-ITNSSQILDFCAGGGGKTLALSMLLNN-KGQIHAWDNNKSRMAPIVARIKRAGIH-NVQL 286 (429)
Q Consensus 215 VQD~aSql~~~~l-----~-~~~g~~vLD~CAapGGKt~~la~~~~~-~g~i~A~D~~~~Rl~~l~~~~~r~g~~-~v~~ 286 (429)
+-..++..++.-| . .-|+..|-|+.|..|.-|+.+--.... .-+|++.|.|..=+++.++.++-..-. -|++
T Consensus 39 ~~~~GayfI~~nL~E~~~~kslp~~~vYDLGCS~G~~~l~~~R~I~~~~~~~igIDNS~pM~~~~~~~~~~y~~~~Pv~~ 118 (247)
T TIGR00740 39 IINLGAYFIGMNLAERFVPKSLPKPLVYDLGCSTGAATLSLRRNIQQDNIKIIGIDNSMPMLERCREHIKAYKNAIPVEV 118 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCHHHHHHHHHHHHHHCCCCCEEE
T ss_conf 99988999987777654331168874122334323577665304687853798841888899999999987424788232
Q ss_pred EECCCCCCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHH-HHHHHHHHHHHCCCCEEEEEECCCCHHH
Q ss_conf 215543445723246789627544504444422366724967899999987-8999999996089838999775888242
Q gi|254780634|r 287 HSSWESLRNLQEHFTTVLVDAPCSGTGTWRRRPDIKWRLSQKNLIERTEEQ-KKILEESAQFVRPEGYLVYITCSILPEE 365 (429)
Q Consensus 287 ~~~~~~~~~~~~~fd~vl~DaPCSg~G~~rr~Pe~~w~~~~~~~~~~~~lQ-~~iL~~a~~~lk~gG~lvYsTCS~~~~E 365 (429)
.+.|...-..+..=-.+|.- + +.-+..-| ..||..-.+-|.|||.||-|-= ..-|
T Consensus 119 ~~~D~~~v~~~~AS~~~L~F-------------------~---LQFl~P~~R~~LL~KIY~~L~~nGvL~lsEK--~~~E 174 (247)
T TIGR00740 119 LCMDIREVEIKNASMVVLNF-------------------T---LQFLRPEEREALLKKIYNGLNPNGVLVLSEK--FMFE 174 (247)
T ss_pred EHHHHHHHHHHHHHHHHHHH-------------------H---HHCCCCHHHHHHHHHHHHHCCCCCEEEEECC--HHHH
T ss_conf 01024566665546887887-------------------7---6047823479999998741077866886320--1366
Q ss_pred CHHHHHHHHHHCCCCEEE
Q ss_conf 999899999857997994
Q gi|254780634|r 366 NIQQINYFLSKNPHFSID 383 (429)
Q Consensus 366 ne~vv~~fL~~~~~~~~~ 383 (429)
...+=+...+-|-+|+..
T Consensus 175 D~~~~~~li~l~~~fK~~ 192 (247)
T TIGR00740 175 DRKLDKLLIELHHLFKRA 192 (247)
T ss_pred HHHHHHHHHHHHHHHHHH
T ss_conf 789999999999998741
No 242
>TIGR00675 dcm DNA-cytosine methyltransferase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2.1.1.73 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine , , . In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA , . The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A : the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation.
Probab=75.89 E-value=4.9 Score=19.95 Aligned_cols=78 Identities=19% Similarity=0.198 Sum_probs=48.3
Q ss_pred EEECCCCCCHHHHHHHHHHCC----CCEEHHHHC--CHHHHHHHHHHHHH---CCCCCCEEEECCCCC-CCCCCCCCEEE
Q ss_conf 860134688279999998616----881005524--98999999999875---028860882155434-45723246789
Q gi|254780634|r 235 ILDFCAGGGGKTLALSMLLNN----KGQIHAWDN--NKSRMAPIVARIKR---AGIHNVQLHSSWESL-RNLQEHFTTVL 304 (429)
Q Consensus 235 vLD~CAapGGKt~~la~~~~~----~g~i~A~D~--~~~Rl~~l~~~~~r---~g~~~v~~~~~~~~~-~~~~~~fd~vl 304 (429)
+.|+|||-||=-+-+-..+.. --.|+|+|+ ++.=.+....|..- .-...|.-....+.+ .-.-..||.+|
T Consensus 1 ~idLFaGiGG~rlGfe~~g~~l~~~~~~V~~sE~PRdk~A~~tY~~Nf~~~~~~~~~DI~~i~~~~~~~~~~~Pd~D~L~ 80 (425)
T TIGR00675 1 VIDLFAGIGGIRLGFEQAGKELTVAFKCVFASEIPRDKYAQKTYEANFGNDEKVPFGDITKISPSDLLRHIAIPDFDILL 80 (425)
T ss_pred CEEEECCCCHHHHHHHHHHHCCCCCEEEEEEECCCCCHHHHHHHHHHCCCCCEECCCCCCCCCCCCCCCCCCCCCEEEEE
T ss_conf 94542551357899997410141113788720166877899999976478842067763336601150012488678996
Q ss_pred ECCCCCCC
Q ss_conf 62754450
Q gi|254780634|r 305 VDAPCSGT 312 (429)
Q Consensus 305 ~DaPCSg~ 312 (429)
-=-||-+=
T Consensus 81 gGFPCQ~F 88 (425)
T TIGR00675 81 GGFPCQPF 88 (425)
T ss_pred CCCCCCHH
T ss_conf 38997134
No 243
>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]
Probab=75.14 E-value=4.7 Score=20.10 Aligned_cols=106 Identities=16% Similarity=0.193 Sum_probs=64.6
Q ss_pred CCCCCCCCCCCEEEECCCCCCHHHHHHHHHHCCCCEEHHHHCCHHHHHHHHHHHHHCCCCCCEEEECCC-C---CCC-CC
Q ss_conf 211236666625860134688279999998616881005524989999999998750288608821554-3---445-72
Q gi|254780634|r 223 VSNLTAITNSSQILDFCAGGGGKTLALSMLLNNKGQIHAWDNNKSRMAPIVARIKRAGIHNVQLHSSWE-S---LRN-LQ 297 (429)
Q Consensus 223 ~~~~l~~~~g~~vLD~CAapGGKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~~~-~---~~~-~~ 297 (429)
+...+.+++|+.|-=.-.|-=|=+..+.+.+.+.++|+|+|+++.|++..+ .+|.+.+--..+.. . ... ..
T Consensus 177 v~nta~v~~G~tvaV~GlGgVGlaaI~gA~~agA~~IiAvD~~~~Kl~~A~----~fGAT~~vn~~~~~~vv~~i~~~T~ 252 (366)
T COG1062 177 VVNTAKVEPGDTVAVFGLGGVGLAAIQGAKAAGAGRIIAVDINPEKLELAK----KFGATHFVNPKEVDDVVEAIVELTD 252 (366)
T ss_pred HHHCCCCCCCCEEEEEECCHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHH----HCCCCEEECCCCHHHHHHHHHHHCC
T ss_conf 641046899984899904276699999898748854999937778999998----6398246554002548999998627
Q ss_pred CCCCEEEECCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECC
Q ss_conf 324678962754450444442236672496789999998789999999960898389997758
Q gi|254780634|r 298 EHFTTVLVDAPCSGTGTWRRRPDIKWRLSQKNLIERTEEQKKILEESAQFVRPEGYLVYITCS 360 (429)
Q Consensus 298 ~~fd~vl~DaPCSg~G~~rr~Pe~~w~~~~~~~~~~~~lQ~~iL~~a~~~lk~gG~lvYsTCS 360 (429)
+-.|.+ + -|.|.- +.++.|..+..++|..|-.--.
T Consensus 253 gG~d~~-~--e~~G~~-------------------------~~~~~al~~~~~~G~~v~iGv~ 287 (366)
T COG1062 253 GGADYA-F--ECVGNV-------------------------EVMRQALEATHRGGTSVIIGVA 287 (366)
T ss_pred CCCCEE-E--ECCCCH-------------------------HHHHHHHHHHHCCCEEEEEECC
T ss_conf 887789-9--925998-------------------------9999999987437818999527
No 244
>pfam04378 DUF519 Protein of unknown function (DUF519). Bacterial family of unknown function, possibly secreted.
Probab=74.22 E-value=6.6 Score=19.07 Aligned_cols=109 Identities=16% Similarity=0.152 Sum_probs=66.0
Q ss_pred CCCHHHHHHHHHHCCCCEEHHHHCCHHHHHHHHHHHHHCCCCCCEEEECCCC-----CCCCCCCCCEEEECCCCCCCHHH
Q ss_conf 6882799999986168810055249899999999987502886088215543-----44572324678962754450444
Q gi|254780634|r 241 GGGGKTLALSMLLNNKGQIHAWDNNKSRMAPIVARIKRAGIHNVQLHSSWES-----LRNLQEHFTTVLVDAPCSGTGTW 315 (429)
Q Consensus 241 apGGKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~~~~-----~~~~~~~fd~vl~DaPCSg~G~~ 315 (429)
=||.=. .++.++..+.+++.+|.|+.-...|++|+.+- .++.+...|.. .-+..++=-.||+|.|--
T Consensus 65 YPGSP~-ia~~llR~qDrl~l~ELHp~d~~~L~~~~~~~--~~v~v~~~DG~~~l~a~lPP~~rRglVLIDPpYE----- 136 (245)
T pfam04378 65 YPGSPL-LARQLLRAQDRLVLCELHPSDYPLLKAEFAGD--RRVRVHQADGFAALKAFLPPKERRGLVLIDPPFE----- 136 (245)
T ss_pred CCCCHH-HHHHHCCCCCCEEEEECCHHHHHHHHHHHCCC--CCCEEEECCHHHHHHHHCCCCCCCEEEEECCCCC-----
T ss_conf 899899-99984896676898855979999999874558--7657993658999996689977867999679866-----
Q ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHCHHHHHHHHHH
Q ss_conf 4422366724967899999987899999999608983899977588824299989999985
Q gi|254780634|r 316 RRRPDIKWRLSQKNLIERTEEQKKILEESAQFVRPEGYLVYITCSILPEENIQQINYFLSK 376 (429)
Q Consensus 316 rr~Pe~~w~~~~~~~~~~~~lQ~~iL~~a~~~lk~gG~lvYsTCS~~~~Ene~vv~~fL~~ 376 (429)
..++..+++ +.|..+.+--..|=++|.--+ + +...++.|+++
T Consensus 137 ----------~k~ey~~v~----~~l~~a~~r~~~g~y~iWYPi-~----~~~~~~~~~~~ 178 (245)
T pfam04378 137 ----------LKDEYQRVV----AALREAYKRWPTGIYAIWYPI-K----DRRQVKRFYRA 178 (245)
T ss_pred ----------CHHHHHHHH----HHHHHHHHHCCCCEEEEEEEC-C----CHHHHHHHHHH
T ss_conf ----------656999999----999999985788379999655-8----74999999999
No 245
>PRK10634 putative ribosome maturation factor; Provisional
Probab=73.28 E-value=5.8 Score=19.49 Aligned_cols=42 Identities=14% Similarity=0.064 Sum_probs=14.7
Q ss_pred CCCCHHHHCCCHHHHHHHH-HHCCHHHHHHHHHHCCCCCCCCCC
Q ss_conf 6791235089988999999-857448999999862898611124
Q gi|254780634|r 117 NAPLHIQGNIPQWLQSSFQ-SYFKDTWLKEAKSLSMRAPLDLRT 159 (429)
Q Consensus 117 ~~~~~i~~s~P~WL~~~~~-~~~ge~~~~~l~a~~~~~pl~iRv 159 (429)
.+++.+.-+-.+.+.+... ..+.+...+.+.++- |-|+++-+
T Consensus 55 ~kpl~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~w-PGplT~Il 97 (190)
T PRK10634 55 DKGLILIAANYEQLKPYIDDSMLTDAQRETIFSCW-PGPVTFVF 97 (190)
T ss_pred CCCCEEEECCHHHHHHHHHHCCCCHHHHHHHHHCC-CCCEEEEE
T ss_conf 89968997999999998752318999999997159-99849998
No 246
>TIGR01862 N2-ase-Ialpha nitrogenase component I, alpha chain; InterPro: IPR010143 This entry represents all three varieties (Fe-Fe, Mo-Fe and V-Fe) of the component I alpha chain of nitrogenase. Nitrogenase (1.18.6.1 from EC) is the enzyme system responsible for biological nitrogen fixation. Nitrogenase is an oligomeric complex which consists of two components: component 2 is an homodimer of an iron-sulphur protein, while component 1 which contains the active site for the reduction of nitrogen to ammonia exists in three different forms: the molybdenum-iron containing protein (MoFe) is a hetero-tetramer consisting of two pairs of alpha (nifD) and beta (nifK) subunits; the vanadium-iron containing protein (VFe) is a hexamer of two pairs each of alpha (vnfD), beta (vnfK), and delta (vnfG) subunits; the third form seems to only contain iron and is a hexamer composed of alpha (anfD), beta (anfK), and delta (anfG) subunits. The alpha and beta chains of the three types of component 1 are evolutionary related and they are also related to proteins nifE and nifN, which are most probably involved in the iron-molybdenum cofactor biosynthesis .; GO: 0016163 nitrogenase activity, 0051536 iron-sulfur cluster binding, 0009399 nitrogen fixation.
Probab=72.77 E-value=3.8 Score=20.68 Aligned_cols=81 Identities=15% Similarity=0.135 Sum_probs=44.1
Q ss_pred CCCEEEECCCCCCCHHHHHHHH-HHHHC-CHHH-HHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHCHHHHHHHHH
Q ss_conf 2467896275445044444223-66724-9678-9999998789999999960898389997758882429998999998
Q gi|254780634|r 299 HFTTVLVDAPCSGTGTWRRRPD-IKWRL-SQKN-LIERTEEQKKILEESAQFVRPEGYLVYITCSILPEENIQQINYFLS 375 (429)
Q Consensus 299 ~fd~vl~DaPCSg~G~~rr~Pe-~~w~~-~~~~-~~~~~~lQ~~iL~~a~~~lk~gG~lvYsTCS~~~~Ene~vv~~fL~ 375 (429)
-...|=+||-.-..--+.--|| .|||. -|+| +++|.+----| .+---..|..|-=.|..==.|--|-|++|+.
T Consensus 376 viPtikidadskniPeitvtPdeqkyrvviPedkveelkkaGvPl-ssyGG~~kr~~eGT~~iDD~N~lE~ee~~e~--- 451 (510)
T TIGR01862 376 VIPTIKIDADSKNIPEITVTPDEQKYRVVIPEDKVEELKKAGVPL-SSYGGVMKRMGEGTLLIDDPNELEFEEIIEK--- 451 (510)
T ss_pred ECCEEEECCCCCCCCEEEECCCCCEEEEECCCCHHHHHHHCCCCC-CCCCCEEEEECCCCEEEECCCCCCHHHHHHH---
T ss_conf 132256615666687126456764137862741367887548730-0347637872354078967888507776665---
Q ss_pred HCCCCEEE
Q ss_conf 57997994
Q gi|254780634|r 376 KNPHFSID 383 (429)
Q Consensus 376 ~~~~~~~~ 383 (429)
-.||.-+.
T Consensus 452 ~KPD~I~~ 459 (510)
T TIGR01862 452 LKPDIILS 459 (510)
T ss_pred HCCCEEEC
T ss_conf 17875761
No 247
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=72.21 E-value=7.4 Score=18.76 Aligned_cols=113 Identities=19% Similarity=0.270 Sum_probs=61.9
Q ss_pred CHHHHHHHHHH---C---CCCEEHHHHC-CHHHHHHHHHHHHHCCCCCCEEEECCCCCC--------CCCCCCCEEEECC
Q ss_conf 82799999986---1---6881005524-989999999998750288608821554344--------5723246789627
Q gi|254780634|r 243 GGKTLALSMLL---N---NKGQIHAWDN-NKSRMAPIVARIKRAGIHNVQLHSSWESLR--------NLQEHFTTVLVDA 307 (429)
Q Consensus 243 GGKt~~la~~~---~---~~g~i~A~D~-~~~Rl~~l~~~~~r~g~~~v~~~~~~~~~~--------~~~~~fd~vl~Da 307 (429)
-|||+-+|-+. . .+-.+++.|. ...=.+.|+.-++++|+.........+... .....+|.||+|-
T Consensus 11 vGKTTTiaKLA~~~~~~~~kV~lit~Dt~R~gA~eQL~~~a~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~D~IlIDT 90 (173)
T cd03115 11 VGKTTTAAKLALYLKKKGKKVLLVAADTYRPAAIEQLRVLGEQVGVPVFEEGEGKDPVSIAKRAIEHAREENFDVVIVDT 90 (173)
T ss_pred CCHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEC
T ss_conf 98899999999999976992899974887577999999999974985992277558799999999998756899899978
Q ss_pred CCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHCHHHHHHHHHH
Q ss_conf 544504444422366724967899999987899999999608983899977588824299989999985
Q gi|254780634|r 308 PCSGTGTWRRRPDIKWRLSQKNLIERTEEQKKILEESAQFVRPEGYLVYITCSILPEENIQQINYFLSK 376 (429)
Q Consensus 308 PCSg~G~~rr~Pe~~w~~~~~~~~~~~~lQ~~iL~~a~~~lk~gG~lvYsTCS~~~~Ene~vv~~fL~~ 376 (429)
| | |+| ..+..+.++..+. + ..+|.=.+ ..-......|-.++++.|-+.
T Consensus 91 a----G---r~~-----~d~~~~~el~~l~----~----~~~p~~~~-LVl~a~~~~~~~~~~~~f~~~ 138 (173)
T cd03115 91 A----G---RLQ-----IDENLMEELKKIK----R----VVKPDEVL-LVVDAMTGQDAVNQAKAFNEA 138 (173)
T ss_pred C----C---CCC-----CCHHHHHHHHHHH----H----HHCCCCCE-EECCCCCHHHHHHHHHHHHHC
T ss_conf 8----8---787-----9999999999998----6----44897215-742465506589999998742
No 248
>pfam00448 SRP54 SRP54-type protein, GTPase domain. This family includes relatives of the G-domain of the SRP54 family of proteins.
Probab=71.29 E-value=7.4 Score=18.77 Aligned_cols=116 Identities=20% Similarity=0.240 Sum_probs=59.0
Q ss_pred CCCCC--HHHHHHHHHH---C---CCCEEHHHHC-CHHHHHHHHHHHHHCCCCCCEEEECCCC---C----CC-CCCCCC
Q ss_conf 34688--2799999986---1---6881005524-9899999999987502886088215543---4----45-723246
Q gi|254780634|r 239 CAGGG--GKTLALSMLL---N---NKGQIHAWDN-NKSRMAPIVARIKRAGIHNVQLHSSWES---L----RN-LQEHFT 301 (429)
Q Consensus 239 CAapG--GKt~~la~~~---~---~~g~i~A~D~-~~~Rl~~l~~~~~r~g~~~v~~~~~~~~---~----~~-~~~~fd 301 (429)
..||- |||+-+|-+. . .+--+++.|. ...-.+.|+.-++.+|+..+......+. . .. ....+|
T Consensus 6 lvGptGvGKTTTiaKLAa~~~~~~~~V~lit~Dt~R~gA~eQL~~ya~~l~v~~~~~~~~~d~~~~~~~~l~~~~~~~~D 85 (196)
T pfam00448 6 LVGLQGSGKTTTIAKLAAYLKKQGKKVLLVAADTFRAAAIEQLKQLAERLGVPVFGSGTGSDPAAVAFDAVEKAKAENYD 85 (196)
T ss_pred EECCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHHHCCCC
T ss_conf 98999998899999999999977992899975877688999999999863981781487778789999999998846899
Q ss_pred EEEECCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCC-EEEEEECCCCHHHCHHHHHHHHHH
Q ss_conf 789627544504444422366724967899999987899999999608983-899977588824299989999985
Q gi|254780634|r 302 TVLVDAPCSGTGTWRRRPDIKWRLSQKNLIERTEEQKKILEESAQFVRPEG-YLVYITCSILPEENIQQINYFLSK 376 (429)
Q Consensus 302 ~vl~DaPCSg~G~~rr~Pe~~w~~~~~~~~~~~~lQ~~iL~~a~~~lk~gG-~lvYsTCS~~~~Ene~vv~~fL~~ 376 (429)
.||+|-| .|+|- .+..+.++..++..+ +|-= .||-+ .+.. .+--+++..|-+.
T Consensus 86 ~IlIDTa-------Gr~~~-----d~~~~~el~~~~~~~--------~~~~~~LVl~-a~~~-~~~~~~~~~f~~~ 139 (196)
T pfam00448 86 VVLVDTA-------GRLQN-----DKNLMDELKKIKRVI--------APDEVLLVLD-ATTG-QNALNQAKAFNEA 139 (196)
T ss_pred EEEEECC-------CCCCC-----CHHHHHHHHHHHHHC--------CCCCEEEEEE-CCCC-CCHHHHHHHHHHH
T ss_conf 9999899-------98747-----677899999998522--------8730289985-6778-2137899987600
No 249
>cd01126 TraG_VirD4 The TraG/TraD/VirD4 family are bacterial conjugation proteins involved in type IV secretion. These proteins aid the transfer of DNA from the plasmid into the host bacterial chromosome. They contain an ATP binding domain. VirD4 is involved in DNA transfer to plant cells and is required for virulence.
Probab=71.26 E-value=7.7 Score=18.63 Aligned_cols=25 Identities=8% Similarity=0.197 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 9999999999997589999970568
Q gi|254780634|r 43 RASISNIVHDVLRKYLSSAYIMDSD 67 (429)
Q Consensus 43 R~~i~~lvyg~lR~~~~ld~il~~~ 67 (429)
++-+.+.++...|..++--++++..
T Consensus 34 Kgel~~~t~~~~~~~G~~v~v~np~ 58 (384)
T cd01126 34 KGENFELTSEHRRALGRKVFVFDPT 58 (384)
T ss_pred CHHHHHHHHHHHHHCCCEEEEEECC
T ss_conf 7899999999999879968998189
No 250
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=70.99 E-value=7.8 Score=18.58 Aligned_cols=142 Identities=17% Similarity=0.182 Sum_probs=68.3
Q ss_pred CCCCEEEECCCCCCHHHHHHHHHHCCCCEEHHHHCCHHHHHHHHHHHHHCCCCCCEEEE---CCCCCCCCCCCCCEEEEC
Q ss_conf 66625860134688279999998616881005524989999999998750288608821---554344572324678962
Q gi|254780634|r 230 TNSSQILDFCAGGGGKTLALSMLLNNKGQIHAWDNNKSRMAPIVARIKRAGIHNVQLHS---SWESLRNLQEHFTTVLVD 306 (429)
Q Consensus 230 ~~g~~vLD~CAapGGKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~---~~~~~~~~~~~fd~vl~D 306 (429)
.+|..+||..|.-||=|-.+.+. +.-.|+|+|+...-+.-=-+ .....+.... ...+...+.+..|.+.+|
T Consensus 78 ~k~kv~LDiGsSTGGFTd~lLq~--gAk~VyavDVG~~Ql~~kLR----~d~rV~~~E~tN~r~l~~~~~~~~~d~~v~D 151 (245)
T COG1189 78 VKGKVVLDIGSSTGGFTDVLLQR--GAKHVYAVDVGYGQLHWKLR----NDPRVIVLERTNVRYLTPEDFTEKPDLIVID 151 (245)
T ss_pred CCCCEEEEECCCCCCHHHHHHHC--CCCEEEEEECCCCCCCHHHH----CCCCEEEEECCCHHHCCHHHCCCCCCEEEEE
T ss_conf 89978998267876299999875--87479999703774378673----5984799852783118987817677847996
Q ss_pred CCCCCCHHHHHHHHHHHHCCH-HHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHCHHHHHHHHHHCCCCEEEEC
Q ss_conf 754450444442236672496-7899999987899999999608983899977588824299989999985799799414
Q gi|254780634|r 307 APCSGTGTWRRRPDIKWRLSQ-KNLIERTEEQKKILEESAQFVRPEGYLVYITCSILPEENIQQINYFLSKNPHFSIDSI 385 (429)
Q Consensus 307 aPCSg~G~~rr~Pe~~w~~~~-~~~~~~~~lQ~~iL~~a~~~lk~gG~lvYsTCS~~~~Ene~vv~~fL~~~~~~~~~~~ 385 (429)
+---.+=.+ -|.+.--..+ .++.-+.+=|.+.=.+. +.++|.+- =--..++=-..|..|+... +|.+..+
T Consensus 152 vSFISL~~i--Lp~l~~l~~~~~~~v~LvKPQFEagr~~---v~kkGvv~---d~~~~~~v~~~i~~~~~~~-g~~~~gl 222 (245)
T COG1189 152 VSFISLKLI--LPALLLLLKDGGDLVLLVKPQFEAGREQ---VGKKGVVR---DPKLHAEVLSKIENFAKEL-GFQVKGL 222 (245)
T ss_pred EEHHHHHHH--HHHHHHHCCCCCEEEEEECCHHHHHHHH---CCCCCEEC---CCCHHHHHHHHHHHHHHHC-CCEEEEE
T ss_conf 423319988--8999974278863899736555540432---27686344---8015899999999888645-9578655
Q ss_pred C
Q ss_conf 3
Q gi|254780634|r 386 I 386 (429)
Q Consensus 386 ~ 386 (429)
.
T Consensus 223 ~ 223 (245)
T COG1189 223 I 223 (245)
T ss_pred E
T ss_conf 7
No 251
>pfam07015 VirC1 VirC1 protein. This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon which enhances T-DNA processing probably does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA.
Probab=70.82 E-value=7.9 Score=18.55 Aligned_cols=144 Identities=19% Similarity=0.276 Sum_probs=69.8
Q ss_pred EEEECCCCCC--HHHH---HHHHHHCCCC-EEHHHHCCHHH-HHHHHHHHHHCCCCC--CEEEECCC--CC----CCC-C
Q ss_conf 5860134688--2799---9999861688-10055249899-999999987502886--08821554--34----457-2
Q gi|254780634|r 234 QILDFCAGGG--GKTL---ALSMLLNNKG-QIHAWDNNKSR-MAPIVARIKRAGIHN--VQLHSSWE--SL----RNL-Q 297 (429)
Q Consensus 234 ~vLD~CAapG--GKt~---~la~~~~~~g-~i~A~D~~~~R-l~~l~~~~~r~g~~~--v~~~~~~~--~~----~~~-~ 297 (429)
+|+-+|..-| |||+ +||..+...| +|.-.|.++.+ +..-.++..+.|..+ ..+..... .+ ... .
T Consensus 2 ~vi~~~~~KGG~GKtT~a~~la~~~~~~g~~V~liD~Dpq~s~~~W~~~a~~~~~~~~~~~v~~~~~~~~l~~~~~~~~~ 81 (231)
T pfam07015 2 QLITFCSFKGGAGKTTALMGLCSALASDGKRVALFEADENRPLTKWRENALRKGTWDPACEIFNADELPLLEQAYEHAEG 81 (231)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHCCCCCCCCCEECCCCHHHHHHHHHHHHH
T ss_conf 37999617998659999999999999689959999689986889999987646888876522205660158999998865
Q ss_pred CCCCEEEECCCCCCCHHHHHH---HH---HHHHCCHHHHHHHHHHHHHHHHH--HHHHHCCCCEEEEEECCCCH-HHCHH
Q ss_conf 324678962754450444442---23---66724967899999987899999--99960898389997758882-42999
Q gi|254780634|r 298 EHFTTVLVDAPCSGTGTWRRR---PD---IKWRLSQKNLIERTEEQKKILEE--SAQFVRPEGYLVYITCSILP-EENIQ 368 (429)
Q Consensus 298 ~~fd~vl~DaPCSg~G~~rr~---Pe---~~w~~~~~~~~~~~~lQ~~iL~~--a~~~lk~gG~lvYsTCS~~~-~Ene~ 368 (429)
..||.|++|-|=+.+-..+.= -| |.-+-+|-|+.+-.+.=+-|.+. +.+.--|...| ..-++... ..-..
T Consensus 82 ~~yD~VIIDtpg~~s~~~~~AI~~ADlVLIP~qpSplD~~~a~~t~~~i~~~~~~~~~~ip~avl-~tRv~~~~~~~~~~ 160 (231)
T pfam07015 82 SGFDYALADTHGGSSELNNTIIASSDLLLIPTMLTPLDIDEALATYRYVIELLLTENLAIPTAIL-RQRVPVGRLTSSQR 160 (231)
T ss_pred CCCCEEEECCCCCCCHHHHHHHHHCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEE-EEECCCCCCCHHHH
T ss_conf 79998998399857589999999789899778998233999999999999999973789980334-55114000217899
Q ss_pred HHHHHHHHCC
Q ss_conf 8999998579
Q gi|254780634|r 369 QINYFLSKNP 378 (429)
Q Consensus 369 vv~~fL~~~~ 378 (429)
.++.++++-|
T Consensus 161 ~i~e~le~lp 170 (231)
T pfam07015 161 FCSDMLEQLP 170 (231)
T ss_pred HHHHHHHCCC
T ss_conf 9999996498
No 252
>TIGR00064 ftsY signal recognition particle-docking protein FtsY; InterPro: IPR004390 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This family includes the cell division ABC transporter and the periplasmic substrate-binding protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In Escherichia coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.; GO: 0005525 GTP binding.
Probab=70.75 E-value=5.5 Score=19.63 Aligned_cols=65 Identities=22% Similarity=0.322 Sum_probs=41.8
Q ss_pred CCHHHHHHHH---HHCCCC---EEHHHHCC-HHHHHHHHHHHHHCCCCCCEEEEC-CCCC---CC-----CCCCCCEEEE
Q ss_conf 8827999999---861688---10055249-899999999987502886088215-5434---45-----7232467896
Q gi|254780634|r 242 GGGKTLALSM---LLNNKG---QIHAWDNN-KSRMAPIVARIKRAGIHNVQLHSS-WESL---RN-----LQEHFTTVLV 305 (429)
Q Consensus 242 pGGKt~~la~---~~~~~g---~i~A~D~~-~~Rl~~l~~~~~r~g~~~v~~~~~-~~~~---~~-----~~~~fd~vl~ 305 (429)
-.|||+-||= ++..+| .|-|.|.= .-=+++|..-++|+|+..|.-... .++. ++ -...+|.||+
T Consensus 92 G~GKTTTIaKLA~~l~~~Gk~V~laAgDTFRAAA~EQL~~Wa~R~gv~vi~~~~gn~DPAaV~fDAi~~Ak~~niDvvli 171 (284)
T TIGR00064 92 GVGKTTTIAKLANKLKKQGKSVLLAAGDTFRAAAIEQLEVWAKRLGVDVIKQKEGNADPAAVIFDAIQAAKARNIDVVLI 171 (284)
T ss_pred CCCHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHHHHHCCEEEECCCCCCCCHHHHHHHHHHHHHCCCCEEEE
T ss_conf 88601028899999987499089982752479999999998988387554078898871789999899998749978997
Q ss_pred C
Q ss_conf 2
Q gi|254780634|r 306 D 306 (429)
Q Consensus 306 D 306 (429)
|
T Consensus 172 D 172 (284)
T TIGR00064 172 D 172 (284)
T ss_pred E
T ss_conf 3
No 253
>pfam00891 Methyltransf_2 O-methyltransferase. This family includes a range of O-methyltransferases. These enzymes utilize S-adenosyl methionine.
Probab=70.58 E-value=8 Score=18.52 Aligned_cols=110 Identities=17% Similarity=0.201 Sum_probs=64.2
Q ss_pred CCCCCCEEEECCCCCCHHHHHHHHHHCCCCEEHHHHCCHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCCEEEECC
Q ss_conf 66666258601346882799999986168810055249899999999987502886088215543445723246789627
Q gi|254780634|r 228 AITNSSQILDFCAGGGGKTLALSMLLNNKGQIHAWDNNKSRMAPIVARIKRAGIHNVQLHSSWESLRNLQEHFTTVLVDA 307 (429)
Q Consensus 228 ~~~~g~~vLD~CAapGGKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~~~~~~~~~~~fd~vl~Da 307 (429)
+-....+|+|++.|.|.=+..++....+ -+.+..|.- +-+ +++... ..+++...+... +.. ..|.+++=-
T Consensus 98 d~~~~~~vvDvGGG~G~~~~~i~~~~P~-l~~~v~Dlp-~v~----~~a~~~--~rv~~~~gdff~-~~P-~aD~y~l~~ 167 (239)
T pfam00891 98 DFSGLSSLVDVGGGTGALAAAIVRAYPH-IKGIVFDLP-HVI----ADAPSA--DRVEFVGGDFFE-SVP-EADAILLKW 167 (239)
T ss_pred CCCCCCEEEEECCCCHHHHHHHHHHCCC-CEEEEEECH-HHH----HHCCCC--CCEEEECCCCCC-CCC-CCCEEEEEH
T ss_conf 7667876899679818999999998899-838986468-778----627646--854884487777-888-851776401
Q ss_pred CCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHCHH
Q ss_conf 5445044444223667249678999999878999999996089838999775888242999
Q gi|254780634|r 308 PCSGTGTWRRRPDIKWRLSQKNLIERTEEQKKILEESAQFVRPEGYLVYITCSILPEENIQ 368 (429)
Q Consensus 308 PCSg~G~~rr~Pe~~w~~~~~~~~~~~~lQ~~iL~~a~~~lk~gG~lvYsTCS~~~~Ene~ 368 (429)
+.+.-+.++ -.+||.++.+.++|||+|+=.- .+.|+++..
T Consensus 168 -------------vLH~w~d~~-------~~~iL~~~~~al~~~grllI~e-~v~~~~~~~ 207 (239)
T pfam00891 168 -------------VLHDWSDED-------CVKILKRCYEALPPGGKVIVVE-MVLPEDPDD 207 (239)
T ss_pred -------------HHCCCCHHH-------HHHHHHHHHHHCCCCCEEEEEE-ECCCCCCCC
T ss_conf -------------431599999-------9999999999779998899997-445799987
No 254
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=70.44 E-value=3.7 Score=20.82 Aligned_cols=14 Identities=14% Similarity=-0.130 Sum_probs=6.4
Q ss_pred CHHHCHHHHHHHHH
Q ss_conf 82429998999998
Q gi|254780634|r 362 LPEENIQQINYFLS 375 (429)
Q Consensus 362 ~~~Ene~vv~~fL~ 375 (429)
|-.|=+.+|++..-
T Consensus 361 NvREL~n~ierav~ 374 (457)
T PRK11361 361 NIRELSNVIERAVV 374 (457)
T ss_pred HHHHHHHHHHHHHH
T ss_conf 99999999999998
No 255
>KOG1500 consensus
Probab=68.05 E-value=9 Score=18.17 Aligned_cols=100 Identities=14% Similarity=0.206 Sum_probs=56.7
Q ss_pred CCCCEEEECCCCCCHHHHHHHHHHCCCCEEHHHHCCHHHHHHHHHHHHHCCCCC-----CEEEECCCCCCCCCCCCCEEE
Q ss_conf 666258601346882799999986168810055249899999999987502886-----088215543445723246789
Q gi|254780634|r 230 TNSSQILDFCAGGGGKTLALSMLLNNKGQIHAWDNNKSRMAPIVARIKRAGIHN-----VQLHSSWESLRNLQEHFTTVL 304 (429)
Q Consensus 230 ~~g~~vLD~CAapGGKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~-----v~~~~~~~~~~~~~~~fd~vl 304 (429)
-.|..|||..||.|--++.-|+ .+ ..+|+|++.+.-- +-++.+-..| |.+..+...--.+.++.|.|+
T Consensus 176 F~~kiVlDVGaGSGILS~FAaq-AG-A~~vYAvEAS~MA-----qyA~~Lv~~N~~~~rItVI~GKiEdieLPEk~DviI 248 (517)
T KOG1500 176 FQDKIVLDVGAGSGILSFFAAQ-AG-AKKVYAVEASEMA-----QYARKLVASNNLADRITVIPGKIEDIELPEKVDVII 248 (517)
T ss_pred CCCCEEEEECCCCCHHHHHHHH-HC-CCEEEEEEHHHHH-----HHHHHHHHCCCCCCEEEECCCCCCEECCCCCCCEEE
T ss_conf 5774899815882489999987-38-6538987456799-----999998743663203787056320103751034787
Q ss_pred ECCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEE
Q ss_conf 6275445044444223667249678999999878999999996089838999
Q gi|254780634|r 305 VDAPCSGTGTWRRRPDIKWRLSQKNLIERTEEQKKILEESAQFVRPEGYLVY 356 (429)
Q Consensus 305 ~DaPCSg~G~~rr~Pe~~w~~~~~~~~~~~~lQ~~iL~~a~~~lk~gG~lvY 356 (429)
-. | .|++- .++.-++.+ -+|-++|||.|.|-=
T Consensus 249 SE-P---MG~mL--------~NERMLEsY--------l~Ark~l~P~GkMfP 280 (517)
T KOG1500 249 SE-P---MGYML--------VNERMLESY--------LHARKWLKPNGKMFP 280 (517)
T ss_pred EC-C---CHHHH--------HHHHHHHHH--------HHHHHHCCCCCCCCC
T ss_conf 25-6---21411--------108889999--------999874287774467
No 256
>KOG3673 consensus
Probab=66.80 E-value=1.7 Score=23.07 Aligned_cols=19 Identities=32% Similarity=0.569 Sum_probs=6.8
Q ss_pred EEECCCCHHHCHHHHHHHH
Q ss_conf 9775888242999899999
Q gi|254780634|r 356 YITCSILPEENIQQINYFL 374 (429)
Q Consensus 356 YsTCS~~~~Ene~vv~~fL 374 (429)
|.||--.+.|-+.+|...|
T Consensus 438 YivCKglr~~~~~~v~~YL 456 (845)
T KOG3673 438 YIVCKGLRKEFANVVKEYL 456 (845)
T ss_pred EEEECCHHHHHHHHHHHHH
T ss_conf 6986111344677899999
No 257
>PRK13849 putative crown gall tumor protein VirC1; Provisional
Probab=65.09 E-value=10 Score=17.79 Aligned_cols=144 Identities=17% Similarity=0.200 Sum_probs=68.1
Q ss_pred EEEECCCCCC--HHHHH---HHHHHCCCC-EEHHHHCCHHH-HHHHHHHHHHCCCCCC--EEEECCC--CC----CC-CC
Q ss_conf 5860134688--27999---999861688-10055249899-9999999875028860--8821554--34----45-72
Q gi|254780634|r 234 QILDFCAGGG--GKTLA---LSMLLNNKG-QIHAWDNNKSR-MAPIVARIKRAGIHNV--QLHSSWE--SL----RN-LQ 297 (429)
Q Consensus 234 ~vLD~CAapG--GKt~~---la~~~~~~g-~i~A~D~~~~R-l~~l~~~~~r~g~~~v--~~~~~~~--~~----~~-~~ 297 (429)
+|+=.+..-| |||+. ||..+...| +|.-.|.++.+ +..-.++..|.|..+. .+..... .. .. ..
T Consensus 2 ~vi~~~~~KGG~GKtT~a~~la~~~~~~g~~v~~iD~Dpq~s~~~W~e~a~~~~~~~~~~~v~~~~~~~~l~~~~e~~~~ 81 (231)
T PRK13849 2 KLLTFCSFKGGAGKTTALMGLCAALASDGKRVALFEADENRPLTRWKENALRSNTWDPACEVYAADELPLLEAAYEDAEL 81 (231)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHCCCCCCCCCEEECCCHHHHHHHHHHHHH
T ss_conf 37999618998769999999999999789959999689986889999876525898877523405652578999988753
Q ss_pred CCCCEEEECCCCCCCHHHHHH---HH---HHHHCCHHHHHHHHHHHHHHHHHHHHHHCC-CCEEEEEECCCC-H-HHCHH
Q ss_conf 324678962754450444442---23---667249678999999878999999996089-838999775888-2-42999
Q gi|254780634|r 298 EHFTTVLVDAPCSGTGTWRRR---PD---IKWRLSQKNLIERTEEQKKILEESAQFVRP-EGYLVYITCSIL-P-EENIQ 368 (429)
Q Consensus 298 ~~fd~vl~DaPCSg~G~~rr~---Pe---~~w~~~~~~~~~~~~lQ~~iL~~a~~~lk~-gG~lvYsTCS~~-~-~Ene~ 368 (429)
..||.|++|-|=+.+-..+.= -| |.-+-+|-|+.+-.+.=+.|.+. .+..++ =-.-|--|.+-. . .--+.
T Consensus 82 ~~~D~VIIDtpg~~s~~~~~Ai~~ADLVLIP~qPSp~D~~~a~~tv~~i~~~-~~~~~~~ip~~vlltRv~a~~~t~~~~ 160 (231)
T PRK13849 82 QGFDYALADTHGGSSELNNTIIASSNLLLIPTMLTPLDIDEALSTYRYVIEL-LLSENLAIPTAILRQRVPVGRLTTSQR 160 (231)
T ss_pred CCCCEEEECCCCCCCHHHHHHHHHCCEEEECCCCCHHHHHHHHHHHHHHHHH-HHHHCCCCCEEEEEEECCHHHHCHHHH
T ss_conf 6998899818997758999999978989977999866799999999999999-997287886566654050454068899
Q ss_pred HHHHHHHHCC
Q ss_conf 8999998579
Q gi|254780634|r 369 QINYFLSKNP 378 (429)
Q Consensus 369 vv~~fL~~~~ 378 (429)
.|...|++.|
T Consensus 161 ~i~~~le~lP 170 (231)
T PRK13849 161 AMSDMLESLP 170 (231)
T ss_pred HHHHHHHCCC
T ss_conf 9999996299
No 258
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=64.54 E-value=4.1 Score=20.49 Aligned_cols=16 Identities=19% Similarity=0.200 Sum_probs=11.8
Q ss_pred CCEEEECCCCCCCHHH
Q ss_conf 4678962754450444
Q gi|254780634|r 300 FTTVLVDAPCSGTGTW 315 (429)
Q Consensus 300 fd~vl~DaPCSg~G~~ 315 (429)
||.|++|.|=+-+-..
T Consensus 40 yD~iiIDtpp~~~~~~ 55 (104)
T cd02042 40 YDYIIIDTPPSLGLLT 55 (104)
T ss_pred CCEEEEECCCCCCHHH
T ss_conf 8889997949998999
No 259
>COG0745 OmpR Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]
Probab=64.17 E-value=5.7 Score=19.52 Aligned_cols=24 Identities=8% Similarity=0.138 Sum_probs=11.1
Q ss_pred EHHHHCCHHHHHHHHHHHHHCCCC
Q ss_conf 005524989999999998750288
Q gi|254780634|r 259 IHAWDNNKSRMAPIVARIKRAGIH 282 (429)
Q Consensus 259 i~A~D~~~~Rl~~l~~~~~r~g~~ 282 (429)
|.-+|-++.-.+.+...+.+.|..
T Consensus 3 ILiveDd~~i~~~l~~~L~~~G~~ 26 (229)
T COG0745 3 ILLVEDDPELAELLKEYLEEEGYE 26 (229)
T ss_pred EEEEECCHHHHHHHHHHHHHCCCE
T ss_conf 999918889999999999875978
No 260
>COG4798 Predicted methyltransferase [General function prediction only]
Probab=63.91 E-value=11 Score=17.64 Aligned_cols=178 Identities=17% Similarity=0.187 Sum_probs=90.3
Q ss_pred CCCCCCCCCCEEEECCCCCCHHHHHHHHHHCCCCEEHHHHCCHHHH------HHHHHHHHHCCCCCCEEEECCCCCCCCC
Q ss_conf 1123666662586013468827999999861688100552498999------9999998750288608821554344572
Q gi|254780634|r 224 SNLTAITNSSQILDFCAGGGGKTLALSMLLNNKGQIHAWDNNKSRM------APIVARIKRAGIHNVQLHSSWESLRNLQ 297 (429)
Q Consensus 224 ~~~l~~~~g~~vLD~CAapGGKt~~la~~~~~~g~i~A~D~~~~Rl------~~l~~~~~r~g~~~v~~~~~~~~~~~~~ 297 (429)
....+.+||+.|.|+--|-|==|-.++-..+.+|.|++.-..+... .++..-.+..+..|++......
T Consensus 41 L~FaGlkpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~~~aN~e~~~~~~------ 114 (238)
T COG4798 41 LAFAGLKPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAAREPVYANVEVIGKPL------ 114 (238)
T ss_pred EEEECCCCCCEEEEEECCCCCHHHHHCHHCCCCEEEEEECCHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCC------
T ss_conf 67752689987999834885074441100287505988564343251014036666666422231045527750------
Q ss_pred CCCCEEEECCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCH------------HH
Q ss_conf 324678962754450444442236672496789999998789999999960898389997758882------------42
Q gi|254780634|r 298 EHFTTVLVDAPCSGTGTWRRRPDIKWRLSQKNLIERTEEQKKILEESAQFVRPEGYLVYITCSILP------------EE 365 (429)
Q Consensus 298 ~~fd~vl~DaPCSg~G~~rr~Pe~~w~~~~~~~~~~~~lQ~~iL~~a~~~lk~gG~lvYsTCS~~~------------~E 365 (429)
+-+++|---++++...-++--+ -..+. ...--+.-..+.+.|||||.++----...+ .-
T Consensus 115 -----~A~~~pq~~d~~~~~~~yhdmh--~k~i~--~~~A~~vna~vf~~LKPGGv~~V~dH~a~pG~~~~dt~~~~ri~ 185 (238)
T COG4798 115 -----VALGAPQKLDLVPTAQNYHDMH--NKNIH--PATAAKVNAAVFKALKPGGVYLVEDHRADPGSGLSDTITLHRID 185 (238)
T ss_pred -----CCCCCCCCCCCCCCCHHHHHHH--CCCCC--CCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCHHHHHCCCC
T ss_conf -----0458997654133211110011--04568--52499999999985388847998740246898800224433657
Q ss_pred CHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCEEEEECCCCC-CCEEEEEEEEEC
Q ss_conf 999899999857997994143002223455555555676984998044798-621589999626
Q gi|254780634|r 366 NIQQINYFLSKNPHFSIDSIIDDWNQLYDLKNHPSLFIENGCCVLTPFLTN-TDGFFFCRLKRH 428 (429)
Q Consensus 366 ne~vv~~fL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~-~dGff~a~l~k~ 428 (429)
.-.||+..++ -+|+++-.+..+-. +. ...+...+-|..-| +| -|.-+|+|-
T Consensus 186 ~a~V~a~vea--aGFkl~aeS~ilaN-------p~--D~~~i~v~dp~~rGetD-rf~~kF~Kp 237 (238)
T COG4798 186 PAVVIAEVEA--AGFKLEAESEILAN-------PD--DPRGIWVFDPTIRGETD-RFTLKFRKP 237 (238)
T ss_pred HHHHHHHHHH--HCCEEECEEHHHCC-------CC--CCCCEEECCCCCCCCCC-EEEEEEECC
T ss_conf 5899999985--13255111120068-------88--88832224841257642-146884057
No 261
>COG1192 Soj ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=63.45 E-value=11 Score=17.59 Aligned_cols=23 Identities=17% Similarity=0.356 Sum_probs=18.3
Q ss_pred CCCCCEEEECCCCCCCHHHHHHHH
Q ss_conf 232467896275445044444223
Q gi|254780634|r 297 QEHFTTVLVDAPCSGTGTWRRRPD 320 (429)
Q Consensus 297 ~~~fd~vl~DaPCSg~G~~rr~Pe 320 (429)
...||.|++|.|=|- |.+..+.-
T Consensus 117 ~~~yD~iiID~pp~l-~~l~~nal 139 (259)
T COG1192 117 KDDYDYIIIDTPPSL-GVLTLNAL 139 (259)
T ss_pred CCCCCEEEECCCCCH-HHHHHHHH
T ss_conf 269998998999861-67779999
No 262
>TIGR01284 alt_nitrog_alph nitrogenase alpha chain; InterPro: IPR005974 The enzyme responsible for nitrogen fixation, the nitrogenase, shows a high degree of conservation of structure, function, and amino acid sequence across wide phylogenetic ranges. All known Mo-nitrogenases consist of two components, component I (also called dinitrogenase, or Fe-Mo protein), an alpha2beta2 tetramer encoded by the nifD and nifK genes, and component II (dinitrogenase reductase, or Fe protein) a homodimer encoded by the nifH gene. Two operons, nifDK and nifEN, encode a tetrameric (alpha2beta2 and N2E2) enzymatic complex. Nitrogenase contains two unusual rare metal clusters; one of them is the iron molybdenum cofactor (FeMo-co), which is considered to be the site of dinitrogen reduction and whose biosynthesis requires the products of nifNE and of some other nif genes. It has been proposed that NifNE might serve as a scaffold upon which FeMo-co is built and then inserted into component I. This model represents the alpha chains of various forms of the nitrogen-fixing enzyme nitrogenase: vanadium-iron, iron-iron, and molybdenum-iron. Most examples of NifD, the molybdenum-iron type nitrogenase alpha chain, are excluded from this model and described instead by equivalog model IPR005972 from INTERPRO.; GO: 0016163 nitrogenase activity, 0051536 iron-sulfur cluster binding, 0009399 nitrogen fixation.
Probab=62.95 E-value=6.8 Score=19.00 Aligned_cols=21 Identities=14% Similarity=0.245 Sum_probs=10.0
Q ss_pred CCCEEEEECCCCCCCCCCCCC
Q ss_conf 265489841556542112366
Q gi|254780634|r 209 QRGWFEIQDEGSQIVSNLTAI 229 (429)
Q Consensus 209 ~~G~~~VQD~aSql~~~~l~~ 229 (429)
+||.+.|-|+.|-=.-+.++.
T Consensus 384 ~EGT~~iDDpNeLE~~Eiie~ 404 (468)
T TIGR01284 384 KEGTLIIDDPNELELLEIIEL 404 (468)
T ss_pred CCCEEEEECCCCCHHHHHHHH
T ss_conf 541078857975038889864
No 263
>PRK10610 chemotaxis regulatory protein CheY; Provisional
Probab=62.66 E-value=7.4 Score=18.74 Aligned_cols=64 Identities=17% Similarity=0.158 Sum_probs=43.6
Q ss_pred HCCC-CEEHHHHCCHHHHHHHHHHHHHCCCCCCEEEECC-CCCC-CCCCCCCEEEECC---CCCCCHHHH
Q ss_conf 6168-8100552498999999999875028860882155-4344-5723246789627---544504444
Q gi|254780634|r 253 LNNK-GQIHAWDNNKSRMAPIVARIKRAGIHNVQLHSSW-ESLR-NLQEHFTTVLVDA---PCSGTGTWR 316 (429)
Q Consensus 253 ~~~~-g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~~-~~~~-~~~~~fd~vl~Da---PCSg~G~~r 316 (429)
|.++ -+|..+|-++.=.+.++..+++.|..+|....+. .... -....||.|++|. ..+|..+++
T Consensus 1 m~~k~lrILivDD~~~~r~~l~~~L~~~g~~~v~~a~~g~~al~~~~~~~~Dlil~D~~MP~~dG~el~~ 70 (129)
T PRK10610 1 MADKELKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAGGFGFVISDWNMPNMDGLELLK 70 (129)
T ss_pred CCCCCCEEEEEECCHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHH
T ss_conf 9899989999979899999999999986997899989999999999858999999818999998999999
No 264
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=62.64 E-value=11 Score=17.49 Aligned_cols=128 Identities=19% Similarity=0.224 Sum_probs=73.0
Q ss_pred CCCCCEEEECCCCCCHHHHHHHHHHC--CCCEEHHHHCCHHHHHHHHHHHH--HCC---CCC--CEEEECCCC--CCCCC
Q ss_conf 66662586013468827999999861--68810055249899999999987--502---886--088215543--44572
Q gi|254780634|r 229 ITNSSQILDFCAGGGGKTLALSMLLN--NKGQIHAWDNNKSRMAPIVARIK--RAG---IHN--VQLHSSWES--LRNLQ 297 (429)
Q Consensus 229 ~~~g~~vLD~CAapGGKt~~la~~~~--~~g~i~A~D~~~~Rl~~l~~~~~--r~g---~~~--v~~~~~~~~--~~~~~ 297 (429)
.+.-++||=+. ||--+.+-|+.+ +-++|+-+|.+++-++..+++.. ..+ ..+ +.+..+|+. +...+
T Consensus 287 ~~~a~~vLvlG---GGDGLAlRellkyP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a~ 363 (508)
T COG4262 287 VRGARSVLVLG---GGDGLALRELLKYPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTAA 363 (508)
T ss_pred CCCCCEEEEEC---CCCHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCHHHHHHHHC
T ss_conf 66642699972---875187999971888552789743889998730026766603677668756999654788997413
Q ss_pred CCCCEEEECCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEE-EECCCCHHHCHHHHHHHHHH
Q ss_conf 32467896275445044444223667249678999999878999999996089838999-77588824299989999985
Q gi|254780634|r 298 EHFTTVLVDAPCSGTGTWRRRPDIKWRLSQKNLIERTEEQKKILEESAQFVRPEGYLVY-ITCSILPEENIQQINYFLSK 376 (429)
Q Consensus 298 ~~fd~vl~DaPCSg~G~~rr~Pe~~w~~~~~~~~~~~~lQ~~iL~~a~~~lk~gG~lvY-sTCS~~~~Ene~vv~~fL~~ 376 (429)
..||.|++|-|=-.+-++.|-=.. +.-.-+.+.|+++|.+|- ++-+...-|-=.-|..-++.
T Consensus 364 ~~fD~vIVDl~DP~tps~~rlYS~-----------------eFY~ll~~~l~e~Gl~VvQags~y~tp~vfw~i~aTik~ 426 (508)
T COG4262 364 DMFDVVIVDLPDPSTPSIGRLYSV-----------------EFYRLLSRHLAETGLMVVQAGSPYFTPRVFWRIDATIKS 426 (508)
T ss_pred CCCCEEEEECCCCCCCCHHHHHHH-----------------HHHHHHHHHCCCCCEEEEECCCCCCCCCEEEEEHHHHHH
T ss_conf 455579996899899513432108-----------------999999973375754999548876577301120547873
No 265
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=62.14 E-value=12 Score=17.43 Aligned_cols=109 Identities=16% Similarity=0.151 Sum_probs=64.5
Q ss_pred CCCCEEEECCCCCCHHHHHHHHHHCCCC---EEHHHHCCHHHHHHHHHHHHHCCCCCCEEEE--CCC--C---CCCCC-C
Q ss_conf 6662586013468827999999861688---1005524989999999998750288608821--554--3---44572-3
Q gi|254780634|r 230 TNSSQILDFCAGGGGKTLALSMLLNNKG---QIHAWDNNKSRMAPIVARIKRAGIHNVQLHS--SWE--S---LRNLQ-E 298 (429)
Q Consensus 230 ~~g~~vLD~CAapGGKt~~la~~~~~~g---~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~--~~~--~---~~~~~-~ 298 (429)
.++..++++.||-+-||-+|.+.+...+ .-+++|+|..=|+.-..++...-..++.+.. .+. . +.... .
T Consensus 75 ~~~~~lVElGsG~~~Kt~~LL~al~~~~~~~~Y~piDIS~~~L~~s~~~l~~~~~~~l~v~~i~gdy~~~~~~l~~~~~~ 154 (319)
T TIGR03439 75 PSGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNFSHVRCAGLLGTYDDGLAWLKRPENR 154 (319)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCCEEEEEEECHHHHHHHCCCCCCC
T ss_conf 89976997468872458999999985499742886517699999999874240489755888875378765420575446
Q ss_pred CCCEEEECCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH-HHHCCCCEEEE
Q ss_conf 24678962754450444442236672496789999998789999999-96089838999
Q gi|254780634|r 299 HFTTVLVDAPCSGTGTWRRRPDIKWRLSQKNLIERTEEQKKILEESA-QFVRPEGYLVY 356 (429)
Q Consensus 299 ~fd~vl~DaPCSg~G~~rr~Pe~~w~~~~~~~~~~~~lQ~~iL~~a~-~~lk~gG~lvY 356 (429)
...+ ++-=|=|..|-+ +|.+- .++|.+-+ ..+.|||.|+=
T Consensus 155 ~~~~-l~~flGStIGNf----------~~~eA-------~~fL~~~~~~~l~~~d~lLi 195 (319)
T TIGR03439 155 SRPT-TILWLGSSIGNF----------SRPEA-------AAFLAGFLATALSPSDSFLI 195 (319)
T ss_pred CCCE-EEEECCCCCCCC----------CHHHH-------HHHHHHHHHHHCCCCCEEEE
T ss_conf 7875-999616544678----------97999-------99999999972598875896
No 266
>pfam06962 rRNA_methylase Putative rRNA methylase. This family contains a number of putative rRNA methylases. Note that many family members are hypothetical proteins.
Probab=61.83 E-value=8.6 Score=18.32 Aligned_cols=113 Identities=12% Similarity=0.254 Sum_probs=63.2
Q ss_pred EEHHHHCCHHHHHHHHHHHHHCCCC-CCEEEECCC-CCC-CC-CCCCCEEEECCCCCCCHHHHHHHHHHHHCCHHHHHHH
Q ss_conf 1005524989999999998750288-608821554-344-57-2324678962754450444442236672496789999
Q gi|254780634|r 258 QIHAWDNNKSRMAPIVARIKRAGIH-NVQLHSSWE-SLR-NL-QEHFTTVLVDAPCSGTGTWRRRPDIKWRLSQKNLIER 333 (429)
Q Consensus 258 ~i~A~D~~~~Rl~~l~~~~~r~g~~-~v~~~~~~~-~~~-~~-~~~fd~vl~DaPCSg~G~~rr~Pe~~w~~~~~~~~~~ 333 (429)
.|+|.|+-+.-+..-+++++..|.. +|++..+.- .+. .. .+.+|.++ =.+|=+=.- | +.+.-.
T Consensus 1 hV~aFDIQ~~Ai~~T~~rL~~~~~~~~v~li~~~He~l~~~v~~~~i~~~~-----FNLGYLPgg-D-------k~i~T~ 67 (140)
T pfam06962 1 HVYAFDIQEEALENTKEKLEQAGLSEIVELILDSHENIDEYIPEGPVKAAI-----FNLGYLPGG-D-------KSITTK 67 (140)
T ss_pred CEEEEECHHHHHHHHHHHHHHCCCCCCEEEEECCHHHHHHHCCCCCCCEEE-----EECCCCCCC-C-------CCCEEC
T ss_conf 957996099999999999996598756899977988898637646766899-----966768899-9-------875877
Q ss_pred HHHHHHHHHHHHHHHCCCCEEEEEECC---CCHHHCHHHHHHHHHHCC--CCEEEE
Q ss_conf 998789999999960898389997758---882429998999998579--979941
Q gi|254780634|r 334 TEEQKKILEESAQFVRPEGYLVYITCS---ILPEENIQQINYFLSKNP--HFSIDS 384 (429)
Q Consensus 334 ~~lQ~~iL~~a~~~lk~gG~lvYsTCS---~~~~Ene~vv~~fL~~~~--~~~~~~ 384 (429)
...-..-|+.+..+|+|||.|+-..-+ ==.+|-+. |..|++.-| .|.+..
T Consensus 68 ~~tTi~Al~~al~lL~~gG~i~i~~Y~GH~gG~eE~~a-V~~~~~~L~~~~~~V~~ 122 (140)
T pfam06962 68 PDTTLEAIKKLLELLKPGGLIILVIYHGHEEGKKEKDA-VLDFVSNLDQKKWNVLQ 122 (140)
T ss_pred CHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHH-HHHHHHHCCHHHEEEEE
T ss_conf 72099999999996366989999997999987999999-99999848960579999
No 267
>TIGR01283 nifE nitrogenase MoFe cofactor biosynthesis protein NifE; InterPro: IPR005973 The enzyme responsible for nitrogen fixation, the nitrogenase, shows a high degree of conservation of structure, function, and amino acid sequence across wide phylogenetic ranges. All known Mo-nitrogenases consist of two components, component I (also called dinitrogenase, or Fe-Mo protein), an alpha2beta2 tetramer encoded by the nifD and nifK genes, and component II (dinitrogenase reductase, or Fe protein) a homodimer encoded by the nifH gene. Two operons, nifDK and nifEN, encode a tetrameric (alpha2beta2 and N2E2) enzymatic complex. Nitrogenase contains two unusual rare metal clusters; one of them is the iron molybdenum cofactor (FeMo-co), which is considered to be the site of dinitrogen reduction and whose biosynthesis requires the products of nifNE and of some other nif genes. It has been proposed that NifNE might serve as a scaffold upon which FeMo-co is built and then inserted into component I. ; GO: 0005515 protein binding, 0006461 protein complex assembly, 0009399 nitrogen fixation.
Probab=61.43 E-value=5.8 Score=19.47 Aligned_cols=53 Identities=23% Similarity=0.261 Sum_probs=22.9
Q ss_pred HCCCEEEEECCCCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHCCCCEEHHHHCCHHHH
Q ss_conf 12654898415565421123666662586013468827999999861688100552498999
Q gi|254780634|r 208 FQRGWFEIQDEGSQIVSNLTAITNSSQILDFCAGGGGKTLALSMLLNNKGQIHAWDNNKSRM 269 (429)
Q Consensus 208 f~~G~~~VQD~aSql~~~~l~~~~g~~vLD~CAapGGKt~~la~~~~~~g~i~A~D~~~~Rl 269 (429)
..+|.+.+-|.++.-...++.-+.-+-++ .|||...+|= |+.|==+|+|..|.
T Consensus 384 ~~~~~~m~Dd~~p~~L~~~~~~~~ADlli-----aGgk~~y~Al----K~gipFlDiNhER~ 436 (470)
T TIGR01283 384 MGEGTVMLDDANPRELLKLLLEYKADLLI-----AGGKERYLAL----KLGIPFLDINHERE 436 (470)
T ss_pred HCCCCEEEECCCHHHHHHHHHHHCCCEEE-----ECCHHHHHHH----HCCCCCCCCCCCCC
T ss_conf 07996786258878999999872898898-----5731233565----51775424554546
No 268
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=61.27 E-value=12 Score=17.33 Aligned_cols=111 Identities=16% Similarity=0.234 Sum_probs=63.4
Q ss_pred CHHHHHHHHHH---CCCC---EEHHHHCCH-HHHHHHHHHHHHCCCCCCEEEECCCCC---C--CCCCCCCEEEECCCCC
Q ss_conf 82799999986---1688---100552498-999999999875028860882155434---4--5723246789627544
Q gi|254780634|r 243 GGKTLALSMLL---NNKG---QIHAWDNNK-SRMAPIVARIKRAGIHNVQLHSSWESL---R--NLQEHFTTVLVDAPCS 310 (429)
Q Consensus 243 GGKt~~la~~~---~~~g---~i~A~D~~~-~Rl~~l~~~~~r~g~~~v~~~~~~~~~---~--~~~~~fd~vl~DaPCS 310 (429)
-|||+.+|-+. ..+| -+++.|... .=.+.|+..++++|+..+...+..... . .....+|.||+|-
T Consensus 86 ~GKTTT~AKLA~~~~~~~~kV~lia~DtyR~aA~eQLk~~a~~l~v~~~~~~~~~~~~~~~~~~~~~~~~DvilIDT--- 162 (270)
T PRK06731 86 VGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEARVDYILIDT--- 162 (270)
T ss_pred CCHHHHHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHHHHHCCCEECCCCHHHHHHHHHHHHHHCCCCEEEEEC---
T ss_conf 98899999999999867990899983888888999999999981995354588789999999999976999999979---
Q ss_pred CCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHCHHHHHHH
Q ss_conf 504444422366724967899999987899999999608983899977588824299989999
Q gi|254780634|r 311 GTGTWRRRPDIKWRLSQKNLIERTEEQKKILEESAQFVRPEGYLVYITCSILPEENIQQINYF 373 (429)
Q Consensus 311 g~G~~rr~Pe~~w~~~~~~~~~~~~lQ~~iL~~a~~~lk~gG~lvYsTCS~~~~Ene~vv~~f 373 (429)
-.|++- ..+-+.++.. ....++|.=.+...-.|+...+-.++.+.|
T Consensus 163 ----AGR~~~-----d~~lm~el~~--------~~~~~~p~~~~Lvldas~~~~~~~~~~~~f 208 (270)
T PRK06731 163 ----AGKNYR-----ASETVEEMIE--------TMGQVEPDYICLTLSASMKSKDMIEIITNF 208 (270)
T ss_pred ----CCCCCC-----CHHHHHHHHH--------HHCCCCCCEEEEEEECCCCHHHHHHHHHHH
T ss_conf ----998714-----6999999999--------860638987999986877769999999980
No 269
>PRK10867 signal recognition particle protein; Provisional
Probab=61.20 E-value=12 Score=17.44 Aligned_cols=27 Identities=7% Similarity=0.188 Sum_probs=10.6
Q ss_pred CCCCEEEEEECCCCHHHCHHHHHHHHHH
Q ss_conf 8983899977588824299989999985
Q gi|254780634|r 349 RPEGYLVYITCSILPEENIQQINYFLSK 376 (429)
Q Consensus 349 k~gG~lvYsTCS~~~~Ene~vv~~fL~~ 376 (429)
+|. ..++..=+..=.+--+|++.|-+.
T Consensus 213 ~P~-e~llV~Da~~GQ~a~~~a~~F~~~ 239 (453)
T PRK10867 213 NPV-ETLFVVDAMTGQDAANTAKAFNEA 239 (453)
T ss_pred CCC-CEEEEEECCCCHHHHHHHHHHHHH
T ss_conf 787-137974322356689999999985
No 270
>TIGR02216 phage_TIGR02216 phage conserved hypothetical protein; InterPro: IPR011739 This entry describes a family of proteins found exclusively in phage or in prophage regions of bacterial genomes, including the phage-like Rhodobacter capsulatus gene transfer agent, which packages DNA..
Probab=61.10 E-value=3.8 Score=20.71 Aligned_cols=26 Identities=31% Similarity=0.482 Sum_probs=21.7
Q ss_pred CCCHHHHHHHHHHHHCCHHHHHHHHH
Q ss_conf 45044444223667249678999999
Q gi|254780634|r 310 SGTGTWRRRPDIKWRLSQKNLIERTE 335 (429)
Q Consensus 310 Sg~G~~rr~Pe~~w~~~~~~~~~~~~ 335 (429)
-|++++|=-||.-||+||+.+.-...
T Consensus 10 aGl~~LRL~pe~FWRlTP~El~am~g 35 (62)
T TIGR02216 10 AGLLVLRLSPEAFWRLTPKELAAMLG 35 (62)
T ss_pred HHHHHHCCCCCCCCCCCHHHHHHHHH
T ss_conf 64644337821012678689999973
No 271
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=60.74 E-value=12 Score=17.27 Aligned_cols=115 Identities=14% Similarity=0.135 Sum_probs=64.4
Q ss_pred CCCCCCCEEE-ECCCCCCHHHHHHHHHHCCCCEEHHHHCCHHHHHHHHHHH------------HHCCCCCCEEEECCCCC
Q ss_conf 3666662586-0134688279999998616881005524989999999998------------75028860882155434
Q gi|254780634|r 227 TAITNSSQIL-DFCAGGGGKTLALSMLLNNKGQIHAWDNNKSRMAPIVARI------------KRAGIHNVQLHSSWESL 293 (429)
Q Consensus 227 l~~~~g~~vL-D~CAapGGKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~------------~r~g~~~v~~~~~~~~~ 293 (429)
|+..+|.+|| =+| |||.-|..+....-.|+.+|+++.-++..-+.. ++....++.+...|...
T Consensus 33 L~~~~~~rVlVPlC----GKs~Dm~wLa~~G~~VvGvEls~~Av~~ff~e~~l~~~~~~~~~~~~y~~~~i~i~~gDfF~ 108 (218)
T PRK13255 33 LALPAGSRVLVPLC----GKSLDMLWLAEQGHEVLGVELSELAVEQFFAENGLTPQVRQSGEFEHYQAGEISLYCGDFFA 108 (218)
T ss_pred CCCCCCCEEEEECC----CCHHHHHHHHHCCCEEEEEECHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCEEEEECCCCC
T ss_conf 08788986999489----86776999984897269983529999999997389863013676037753882799664202
Q ss_pred C--CCCCCCCEEEECCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHH
Q ss_conf 4--57232467896275445044444223667249678999999878999999996089838999775888242
Q gi|254780634|r 294 R--NLQEHFTTVLVDAPCSGTGTWRRRPDIKWRLSQKNLIERTEEQKKILEESAQFVRPEGYLVYITCSILPEE 365 (429)
Q Consensus 294 ~--~~~~~fd~vl~DaPCSg~G~~rr~Pe~~w~~~~~~~~~~~~lQ~~iL~~a~~~lk~gG~lvYsTCS~~~~E 365 (429)
- ..-+.||.|.==|-- +.=+|+.| .+-..+...+++|||..+-.|-...+++
T Consensus 109 L~~~~~g~~DaIyDRaal-----~ALpp~~R---------------~~Y~~~l~~ll~~g~~~LLitl~Y~q~~ 162 (218)
T PRK13255 109 LTAADLADVDAVYDRAAL-----IALPEEMR---------------ERYVQQLAALLPAGCRGLLVTLDYPQEE 162 (218)
T ss_pred CCHHHCCCCCEEEECCCE-----ECCCHHHH---------------HHHHHHHHHHCCCCCCEEEEEEECCCCC
T ss_conf 786354774889975380-----12898999---------------9999999986499874899998627655
No 272
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=60.58 E-value=12 Score=17.25 Aligned_cols=102 Identities=16% Similarity=0.214 Sum_probs=52.2
Q ss_pred CCCCCEEEECCCCCC-HHHH---HHHHHHCCCC-EE--HHHHCCHHHHHHHHHHHHHCCCC-------------------
Q ss_conf 666625860134688-2799---9999861688-10--05524989999999998750288-------------------
Q gi|254780634|r 229 ITNSSQILDFCAGGG-GKTL---ALSMLLNNKG-QI--HAWDNNKSRMAPIVARIKRAGIH------------------- 282 (429)
Q Consensus 229 ~~~g~~vLD~CAapG-GKt~---~la~~~~~~g-~i--~A~D~~~~Rl~~l~~~~~r~g~~------------------- 282 (429)
.+++..|+=.-+.|| |||+ .||..+...| ++ +=.|....++...-.--..-|+.
T Consensus 528 ~~~~kvi~vTS~~pgEGKSt~a~nLA~~~A~~G~rvLLID~DlRrp~l~~~~~~~~~~GLs~~L~g~~~~~~~i~~~~~~ 607 (726)
T PRK09841 528 ETENNILMITGATPDSGKTFVSSTLAAVIAQSDQKVLFIDADLRRGYSHNLFTVSNEHGLSEYLAGKDELNKVIQHFGKG 607 (726)
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCCHHHHCCCCCCCCHHHHHCCCCCHHHHCCCCCCC
T ss_conf 88886899977999997799999999999847995999828877710776159999987799838999889933027989
Q ss_pred CCEEEECCCCC----------------CCCCCCCCEEEECCCC----CCCHHHHHHHH-----HHHHCCHHHH
Q ss_conf 60882155434----------------4572324678962754----45044444223-----6672496789
Q gi|254780634|r 283 NVQLHSSWESL----------------RNLQEHFTTVLVDAPC----SGTGTWRRRPD-----IKWRLSQKNL 330 (429)
Q Consensus 283 ~v~~~~~~~~~----------------~~~~~~fd~vl~DaPC----Sg~G~~rr~Pe-----~~w~~~~~~~ 330 (429)
|..+....... ..+...||.|++|.|= |-.-++.++-| +||..|+.+.
T Consensus 608 ~ldvl~aG~~p~nP~elL~s~~~~~ll~~l~~~yD~IIiDtPPvl~v~Da~~l~~~~D~~l~Vvr~g~T~~~~ 680 (726)
T PRK09841 608 GFDVITRGQVPPNPSELLMRDRMRQLLEWANDHYDLVIVDTPPMLAVSDAAVVGRSVGTSLLVARFGLNTAKE 680 (726)
T ss_pred CEEEEECCCCCCCHHHHHCCHHHHHHHHHHHHCCCEEEEECCCCCCCCHHHHHHHHCCEEEEEEECCCCCHHH
T ss_conf 9899828999979899958769999999998139999991999653415999999789599999799688999
No 273
>pfam03141 DUF248 Putative methyltransferase. Members of this family of hypothetical plant proteins are probably methyltransferases: several of the aligned sequences either match the methyltransferase profile, or contain a SAM-binding motif. A protein from Arabidopsis thaliana contains both. Several family members are described as ankyrin like.
Probab=59.97 E-value=5.8 Score=19.45 Aligned_cols=29 Identities=21% Similarity=0.475 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHCCCCEEEEEECCCCHHHCHHHHHHH
Q ss_conf 899999999608983899977588824299989999
Q gi|254780634|r 338 KKILEESAQFVRPEGYLVYITCSILPEENIQQINYF 373 (429)
Q Consensus 338 ~~iL~~a~~~lk~gG~lvYsTCS~~~~Ene~vv~~f 373 (429)
.+||.+.=+.|+|||.++-- .+.++|...
T Consensus 447 ~dillEMDRILRP~G~vIiR-------D~~~vl~~v 475 (506)
T pfam03141 447 EDILLEMDRILRPGGAVIIR-------DDVDVLDKV 475 (506)
T ss_pred HHHHHHHHHHCCCCCEEEEE-------CCHHHHHHH
T ss_conf 99998887600688149994-------679999999
No 274
>KOG1969 consensus
Probab=59.87 E-value=8.1 Score=18.50 Aligned_cols=46 Identities=20% Similarity=0.174 Sum_probs=22.3
Q ss_pred CCCEEEECCCCCCCHHHHHHHHHHH----HCCHHHHHHHHHHHHHHHHHH
Q ss_conf 2467896275445044444223667----249678999999878999999
Q gi|254780634|r 299 HFTTVLVDAPCSGTGTWRRRPDIKW----RLSQKNLIERTEEQKKILEES 344 (429)
Q Consensus 299 ~fd~vl~DaPCSg~G~~rr~Pe~~w----~~~~~~~~~~~~lQ~~iL~~a 344 (429)
.|-.|+.-+|-+-+-.+.|--+|=- +..+..+..|.++-..=+++.
T Consensus 458 ~~A~ii~f~~p~~s~Lv~RL~~IC~rE~mr~d~~aL~~L~el~~~DIRsC 507 (877)
T KOG1969 458 PFAEIIAFVPPSQSRLVERLNEICHRENMRADSKALNALCELTQNDIRSC 507 (877)
T ss_pred CCEEEEEECCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCHHHHH
T ss_conf 10489995699766899999999764157788789999999861309888
No 275
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=59.31 E-value=12 Score=17.33 Aligned_cols=66 Identities=24% Similarity=0.194 Sum_probs=39.2
Q ss_pred CHHHHHHHHHHC-------CC---CEEHHHHC-CHHHHHHHHHHHHHCCCCCCEEEECCCCCC--CCCCCCCEEEECCC
Q ss_conf 827999999861-------68---81005524-989999999998750288608821554344--57232467896275
Q gi|254780634|r 243 GGKTLALSMLLN-------NK---GQIHAWDN-NKSRMAPIVARIKRAGIHNVQLHSSWESLR--NLQEHFTTVLVDAP 308 (429)
Q Consensus 243 GGKt~~la~~~~-------~~---g~i~A~D~-~~~Rl~~l~~~~~r~g~~~v~~~~~~~~~~--~~~~~fd~vl~DaP 308 (429)
=|||+-+|-+.. .+ --+++.|. ...=.+.|+.-++.+|+....+....+... .....+|.||+|-+
T Consensus 185 vGKTTTiAKLAa~~~l~~~~k~~~V~lit~DtyRigAveQLktya~il~vp~~v~~~~~dl~~~l~~~~~~D~IlIDTA 263 (388)
T PRK12723 185 VGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQSKDFDLVLIDTI 263 (388)
T ss_pred CCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCEEEECCHHHHHHHHHHHCCCCEEEEECC
T ss_conf 7578799999999998626767737999807875889999999999978806985788999999997249999999589
No 276
>KOG0022 consensus
Probab=59.11 E-value=13 Score=17.08 Aligned_cols=52 Identities=19% Similarity=0.244 Sum_probs=37.9
Q ss_pred CCCCCCCEEEECCCCCCHHHHHHHHHHCCCCEEHHHHCCHHHHHHHHHHHHHCCCC
Q ss_conf 36666625860134688279999998616881005524989999999998750288
Q gi|254780634|r 227 TAITNSSQILDFCAGGGGKTLALSMLLNNKGQIHAWDNNKSRMAPIVARIKRAGIH 282 (429)
Q Consensus 227 l~~~~g~~vLD~CAapGGKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~ 282 (429)
..++||..|-=.--|.=|=+..+.++..+.++|+++|+++.|.+..+ .+|++
T Consensus 188 Akv~~GstvAVfGLG~VGLav~~Gaka~GAsrIIgvDiN~~Kf~~ak----~fGaT 239 (375)
T KOG0022 188 AKVEPGSTVAVFGLGGVGLAVAMGAKAAGASRIIGVDINPDKFEKAK----EFGAT 239 (375)
T ss_pred CCCCCCCEEEEEECCHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHH----HCCCC
T ss_conf 34677987999905457889987677618651799855878989987----61950
No 277
>pfam05185 PRMT5 PRMT5 arginine-N-methyltransferase. The human homologue of yeast Skb1 (Shk1 kinase-binding protein 1) is PRMT5, an arginine-N-methyltransferase. These proteins appear to be key mitotic regulators. They play a role in Jak signalling in higher eukaryotes.
Probab=58.53 E-value=13 Score=17.02 Aligned_cols=101 Identities=24% Similarity=0.249 Sum_probs=62.5
Q ss_pred EEEECCCCCCH---HHHHHHHHHCCCCEEHHHHCCHHHHHHHHHHHHH--CCCCCCEEEECCCCCCCCCCCCCEEEECCC
Q ss_conf 58601346882---7999999861688100552498999999999875--028860882155434457232467896275
Q gi|254780634|r 234 QILDFCAGGGG---KTLALSMLLNNKGQIHAWDNNKSRMAPIVARIKR--AGIHNVQLHSSWESLRNLQEHFTTVLVDAP 308 (429)
Q Consensus 234 ~vLD~CAapGG---Kt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r--~g~~~v~~~~~~~~~~~~~~~fd~vl~DaP 308 (429)
.|+=+.||.|. .++.-++..+.+-+|+|+|.+++-+-.|+.++.+ .|- .|++...|...-...+++|.|.=.
T Consensus 189 vI~VvGAGRGPLV~~~l~A~~~~~~~v~i~AVEKNpnA~vtL~~r~n~~~W~~-~V~ii~~DMR~w~~p~k~Di~VSE-- 265 (447)
T pfam05185 189 VILVVGAGRGPLVDRALRAAEETGRKVKIYAVEKNPNAVVTLQKRVNFEEWGD-KVTLISSDMREWKGPEKADILVSE-- 265 (447)
T ss_pred EEEEECCCCCHHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHHHHHHHCCC-CEEEEECCHHCCCCCCCCCEEEEE--
T ss_conf 99998589648999999999981996699999568779999999850543178-069990800057998773589752--
Q ss_pred CCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEE
Q ss_conf 44504444422366724967899999987899999999608983899
Q gi|254780634|r 309 CSGTGTWRRRPDIKWRLSQKNLIERTEEQKKILEESAQFVRPEGYLV 355 (429)
Q Consensus 309 CSg~G~~rr~Pe~~w~~~~~~~~~~~~lQ~~iL~~a~~~lk~gG~lv 355 (429)
=+|.++-|- ++||=++ -+-++|||+|+-+
T Consensus 266 --LLGSFGDNE-----LSPECLd-----------g~q~~lk~~gIsI 294 (447)
T pfam05185 266 --LLGSFGDNE-----LSPECLD-----------GAQRFLKPDGISI 294 (447)
T ss_pred --CCCCCCCCC-----CCHHHHH-----------HHHHHCCCCCEEE
T ss_conf --116666655-----7977877-----------8997468984682
No 278
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family; InterPro: IPR014329 Members of this entry are the m6-adenine DNA methyltransferase protein, or a fusion protein that also carries m5 cytosine methyltransferase activity of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A type II restriction endonuclease always accompanies a methyltransferase of this type from Alw26I/Eco31I/Esp3I(IPR014328 from INTERPRO) and by an adenine-specific modification methyltransferase. Members of this are unusual in that the regions of similarity to homologues outside this family are circularly permuted..
Probab=57.59 E-value=4.3 Score=20.37 Aligned_cols=172 Identities=17% Similarity=0.139 Sum_probs=80.4
Q ss_pred EEEECCCCCCCCCCCCC-----C---CCCEEEECCCCCCHHHHHHHHHH------CC-----CCEEHHHHCCHHHHHHHH
Q ss_conf 89841556542112366-----6---66258601346882799999986------16-----881005524989999999
Q gi|254780634|r 213 FEIQDEGSQIVSNLTAI-----T---NSSQILDFCAGGGGKTLALSMLL------NN-----KGQIHAWDNNKSRMAPIV 273 (429)
Q Consensus 213 ~~VQD~aSql~~~~l~~-----~---~g~~vLD~CAapGGKt~~la~~~------~~-----~g~i~A~D~~~~Rl~~l~ 273 (429)
|+-.+.|..|+..++.- + ...+++|-|+|-|-=-+.+.... .+ .-.|+-.|++..=|....
T Consensus 7 fT~~~~~~~m~~~l~~~~~~~~~~nI~~~~~~DP~~G~G~Li~~~L~~~~~i~~~~~~i~~~~~~~~~~Di~~~~L~~~~ 86 (603)
T TIGR02987 7 FTPLDLAKEMVKELVKEIDKNDKSNIEKLKIIDPCCGDGRLIALLLKKFEEINLFKEQIEKVELNIYLADIDKTLLERAS 86 (603)
T ss_pred ECCHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHEEEEECCCHHHHHHHH
T ss_conf 27689999999999875176530004154533575276499999999866430340232331110002314447999999
Q ss_pred HHHHHCC----CC--CCEEEE-----------CCCC-------CC---CCCCCCCEEEECCCCCCCHHHHHH----HHHH
Q ss_conf 9987502----88--608821-----------5543-------44---572324678962754450444442----2366
Q gi|254780634|r 274 ARIKRAG----IH--NVQLHS-----------SWES-------LR---NLQEHFTTVLVDAPCSGTGTWRRR----PDIK 322 (429)
Q Consensus 274 ~~~~r~g----~~--~v~~~~-----------~~~~-------~~---~~~~~fd~vl~DaPCSg~G~~rr~----Pe~~ 322 (429)
..+.+.+ .- ++.... .... .. -..+.||.|+.=+|=-+.=.-.+. ++..
T Consensus 87 ~~~~~~~k~~F~~~~~~~~~~~~~~~~~~~~~~~~~EYI~~~~~F~~EV~keGFD~~ItNPPy~~~K~dk~~~~n~~~~~ 166 (603)
T TIGR02987 87 KLLSELAKLLFALEISIILTNSLSDVFLLIEEYKEKEYIKLEDVFGDEVKKEGFDIVITNPPYKNLKPDKKELSNLETLE 166 (603)
T ss_pred HHHHHHHHHHHHCCCCEEECCHHHHHHHHHHHHCCCCCEEEEECCCCCEEECCCEEEEECCCCCCCCCCCCCCCCCCHHH
T ss_conf 98878766654237751001102344454554201022254501553200157417997788855444510001468255
Q ss_pred HHCCHHHHHHHHHHHHHHHHHHHHH------HCCCCEEEEEECCCCHHHCHHHHHHHHHHCCCCEEEECCCCCC
Q ss_conf 7249678999999878999999996------0898389997758882429998999998579979941430022
Q gi|254780634|r 323 WRLSQKNLIERTEEQKKILEESAQF------VRPEGYLVYITCSILPEENIQQINYFLSKNPHFSIDSIIDDWN 390 (429)
Q Consensus 323 w~~~~~~~~~~~~lQ~~iL~~a~~~------lk~gG~lvYsTCS~~~~Ene~vv~~fL~~~~~~~~~~~~~~~~ 390 (429)
.........++...-..++..|-.. ...-|++-||-|- ++++.....+..-..++-+.+.+.
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~S~p~kKf~g~g~~~G~~~ysr~~------~~~~~~~~~~~G~v~i~~P~S~l~ 234 (603)
T TIGR02987 167 KESYKDSLKELDDFLSRVFPYSDPRKKFAGVGTEKGILNYSRVG------EEISLELVKKNGLVSIVIPSSILA 234 (603)
T ss_pred HHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCCCCHHHHHHH------HHHHHHHHCCCCEEEEECCCCCCC
T ss_conf 44453776412222333024210034433678667606799999------999998734598799963630105
No 279
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=56.26 E-value=8.6 Score=18.32 Aligned_cols=13 Identities=0% Similarity=-0.092 Sum_probs=6.5
Q ss_pred CHHHCHHHHHHHH
Q ss_conf 8242999899999
Q gi|254780634|r 362 LPEENIQQINYFL 374 (429)
Q Consensus 362 ~~~Ene~vv~~fL 374 (429)
|-.|=+.+|++..
T Consensus 356 NvrEL~n~ier~~ 368 (469)
T PRK10923 356 NVRQLENTCRWLT 368 (469)
T ss_pred HHHHHHHHHHHHH
T ss_conf 7999999999999
No 280
>TIGR00677 fadh2_euk methylenetetrahydrofolate reductase; InterPro: IPR004621 The enzyme activities methylenetetrahydrofolate reductase (1.5.1.20 from EC) and 5,10-methylenetetrahydrofolate reductase (FADH) (1.7.99.5 from EC) differ in that the former (assigned in many eukaryotes) is defined to use NADP+ as an acceptor, while the latter (assigned in many bacteria) is flexible with respect to the acceptor. Both convert 5-methyltetrahydrofolate to 5,10-methylenetetrahydrofolate. From a larger set of proteins assigned as one or the other, this family describes the subset of proteins found in eukaryotes, and currently designated methylenetetrahydrofolate reductase (1.5.1.20 from EC). This protein is an FAD-containing flavoprotein.; GO: 0004489 methylenetetrahydrofolate reductase (NADPH) activity, 0006555 methionine metabolic process.
Probab=55.96 E-value=15 Score=16.74 Aligned_cols=14 Identities=21% Similarity=0.204 Sum_probs=7.7
Q ss_pred HHHHHHHHHCCHHH
Q ss_conf 89999998574489
Q gi|254780634|r 129 WLQSSFQSYFKDTW 142 (429)
Q Consensus 129 WL~~~~~~~~ge~~ 142 (429)
=||+.++..|||.+
T Consensus 126 DLV~yIr~~YGD~F 139 (312)
T TIGR00677 126 DLVKYIRSKYGDYF 139 (312)
T ss_pred HHHHHHHHHCCCCC
T ss_conf 88998775238802
No 281
>COG2961 ComJ Protein involved in catabolism of external DNA [General function prediction only]
Probab=55.87 E-value=15 Score=16.73 Aligned_cols=148 Identities=18% Similarity=0.207 Sum_probs=83.7
Q ss_pred HCCHHHCCCE---EEEECCCCCCCCC-----CCCCCCCCEEEECCCCCCHHHHHHHHHHCCCCEEHHHHCCHHHHHHHHH
Q ss_conf 1096312654---8984155654211-----2366666258601346882799999986168810055249899999999
Q gi|254780634|r 203 MNDITFQRGW---FEIQDEGSQIVSN-----LTAITNSSQILDFCAGGGGKTLALSMLLNNKGQIHAWDNNKSRMAPIVA 274 (429)
Q Consensus 203 ~~~~~f~~G~---~~VQD~aSql~~~-----~l~~~~g~~vLD~CAapGGKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~ 274 (429)
.++..|++|- |.-||..+.+... .+++..+ |+.- ||.- ...+.+...+-++.++|.|++-...|+.
T Consensus 55 ~ktgE~~~GI~RL~~a~~lpa~l~~yl~~i~~lN~~~~---l~~Y--pGSP-~lA~~llR~qDRl~l~ELHp~D~~~L~~ 128 (279)
T COG2961 55 EKTGEYEQGIARLWQAADLPAELEPYLDAVRQLNPGGG---LRYY--PGSP-LLARQLLREQDRLVLTELHPSDAPLLRN 128 (279)
T ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCC---CCCC--CCCH-HHHHHHCCHHCEEEEEECCCCHHHHHHH
T ss_conf 64337988899998547856999999999997487888---0458--9998-9999871401003320048457999997
Q ss_pred HHHHCCCCCCEEEECCCCC-----CCCCCCCCEEEECCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 9875028860882155434-----45723246789627544504444422366724967899999987899999999608
Q gi|254780634|r 275 RIKRAGIHNVQLHSSWESL-----RNLQEHFTTVLVDAPCSGTGTWRRRPDIKWRLSQKNLIERTEEQKKILEESAQFVR 349 (429)
Q Consensus 275 ~~~r~g~~~v~~~~~~~~~-----~~~~~~fd~vl~DaPCSg~G~~rr~Pe~~w~~~~~~~~~~~~lQ~~iL~~a~~~lk 349 (429)
|+. +-.++.+...|... -+..++=-.||+|.|---- .+..+++.- |..+.+-..
T Consensus 129 ~f~--~d~~vrv~~~DG~~~l~a~LPP~erRglVLIDPPfE~~---------------~eY~rvv~~----l~~~~kRf~ 187 (279)
T COG2961 129 NFA--GDRRVRVLRGDGFLALKAHLPPKERRGLVLIDPPFELK---------------DEYQRVVEA----LAEAYKRFA 187 (279)
T ss_pred HHC--CCCCEEEEECCCHHHHHHHCCCCCCCEEEEECCCCCCC---------------CHHHHHHHH----HHHHHHHHC
T ss_conf 627--78414788347188886218997762589958986662---------------179999999----999998624
Q ss_pred CCCEEEEEECCCCHHHCHHHHHHHHHHCCCCEE
Q ss_conf 983899977588824299989999985799799
Q gi|254780634|r 350 PEGYLVYITCSILPEENIQQINYFLSKNPHFSI 382 (429)
Q Consensus 350 ~gG~lvYsTCS~~~~Ene~vv~~fL~~~~~~~~ 382 (429)
.|-+.+. .|.-.-.+++.|++.-..+.+
T Consensus 188 ~g~yaiW-----YPik~r~~~~~f~~~L~~~~i 215 (279)
T COG2961 188 TGTYAIW-----YPIKDRRQIRRFLRALEALGI 215 (279)
T ss_pred CCEEEEE-----EEECCHHHHHHHHHHHHHCCC
T ss_conf 8659999-----760034899999999763485
No 282
>PRK11091 aerobic respiration control sensor protein ArcB; Provisional
Probab=54.64 E-value=9.4 Score=18.03 Aligned_cols=114 Identities=14% Similarity=0.165 Sum_probs=60.4
Q ss_pred CEEHHHHCCHHHHHHHHHHHHHCCCCCCEEEECCCCCCC-CCCCCCEEEECCC---CCCCHH---HHHHHHHHHHCCHHH
Q ss_conf 810055249899999999987502886088215543445-7232467896275---445044---444223667249678
Q gi|254780634|r 257 GQIHAWDNNKSRMAPIVARIKRAGIHNVQLHSSWESLRN-LQEHFTTVLVDAP---CSGTGT---WRRRPDIKWRLSQKN 329 (429)
Q Consensus 257 g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~~~~~~~-~~~~fd~vl~DaP---CSg~G~---~rr~Pe~~w~~~~~~ 329 (429)
-+|..+|-++-=...++.-++++|+....+.++...+.. ..+.||.||.|.= .+|.-+ ||.+.... ...|
T Consensus 526 lrILvVEDn~iN~~V~~~~L~~lG~~v~~A~nG~eALe~~~~~~fDLILMDiqMP~MDG~Eatr~IR~~~~~~-~~~P-- 602 (779)
T PRK11091 526 LNILLVEDIELNVIVARSLLEKLGNSVDVAMTGKDALEMFKPGEYDLVLLDIQLPDMTGLDVARELRERYGRE-DLPP-- 602 (779)
T ss_pred CEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHCCCCC-CCCC--
T ss_conf 8189986889999999999997599999989999999985069999899828999997899999998425768-9992--
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHCHHHHHHHHHHC
Q ss_conf 999999878999999996089838999775888242999899999857
Q gi|254780634|r 330 LIERTEEQKKILEESAQFVRPEGYLVYITCSILPEENIQQINYFLSKN 377 (429)
Q Consensus 330 ~~~~~~lQ~~iL~~a~~~lk~gG~lvYsTCS~~~~Ene~vv~~fL~~~ 377 (429)
|-.+. ...+..--+++.. |.==|-+=-+.+++=.+++..++...
T Consensus 603 IIALT---Ana~~d~~~~l~a-GMdd~L~KPi~~~~L~~~l~~~~~~~ 646 (779)
T PRK11091 603 LVALT---ANVLKDKQEYLDA-GMDDVLSKPLSVPALTAMIKKFWDTQ 646 (779)
T ss_pred EEEEE---CCCCHHHHHHHHC-CCCCEEECCCCHHHHHHHHHHHHCCC
T ss_conf 79881---8741769999976-99847518898999999999984645
No 283
>PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated
Probab=54.48 E-value=15 Score=16.58 Aligned_cols=122 Identities=15% Similarity=0.147 Sum_probs=51.3
Q ss_pred CCEEEECCCCCCHHHHHHHHHH-CCCCEEHHHHCCHHHHHHHHHHHHHCCCCCCEEEECCCC-------CCCCCCCCCEE
Q ss_conf 6258601346882799999986-168810055249899999999987502886088215543-------44572324678
Q gi|254780634|r 232 SSQILDFCAGGGGKTLALSMLL-NNKGQIHAWDNNKSRMAPIVARIKRAGIHNVQLHSSWES-------LRNLQEHFTTV 303 (429)
Q Consensus 232 g~~vLD~CAapGGKt~~la~~~-~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~~~~-------~~~~~~~fd~v 303 (429)
|..+|=.-|+.| ==..+|+.+ .....|+.+|.+..+++.+.+.+...|-..+.+..+-.. ......+|.+|
T Consensus 11 gKvalVTGas~G-IG~aia~~la~~Ga~V~i~~~~~~~~~~~~~~l~~~g~~~~~~~~Dv~~~~~~~~~v~~~~~~~G~i 89 (255)
T PRK06113 11 GKCAIITGAGAG-IGKEIAITFATAGASVVVSDINADAANHVVDEIQQLGGQAFACRCDITSEQELSALADFAVSKLGKV 89 (255)
T ss_pred CCEEEEECCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHHHCCC
T ss_conf 998999588778-9999999999879999999698899999999999659908999836899999999999999981998
Q ss_pred EECCCCCCCHHHHHHHHHHHHCCHHHHHHHHH----HHHHHHHHHHHHHCC--CCEEEEEEC
Q ss_conf 96275445044444223667249678999999----878999999996089--838999775
Q gi|254780634|r 304 LVDAPCSGTGTWRRRPDIKWRLSQKNLIERTE----EQKKILEESAQFVRP--EGYLVYITC 359 (429)
Q Consensus 304 l~DaPCSg~G~~rr~Pe~~w~~~~~~~~~~~~----lQ~~iL~~a~~~lk~--gG~lvYsTC 359 (429)
|.=+...|.-...| |..+.++..+... --..+..++.+.++. ||.+|..+.
T Consensus 90 --DilVnNAG~~~~~~---~d~~~~~~~~~~~~Nl~~~~~~~~~~~p~m~~~~~G~IInisS 146 (255)
T PRK06113 90 --DILVNNAGGGGPKP---FDMPMADFRRAYELNVFSFFHLSQLVAPEMEKNGGGVILTITS 146 (255)
T ss_pred --CEEEECCCCCCCCC---CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEE
T ss_conf --89998788789987---7599999999999964999999999999888718967999844
No 284
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=54.35 E-value=11 Score=17.61 Aligned_cols=15 Identities=7% Similarity=0.319 Sum_probs=10.8
Q ss_pred CCCEEEECCCCCCCH
Q ss_conf 246789627544504
Q gi|254780634|r 299 HFTTVLVDAPCSGTG 313 (429)
Q Consensus 299 ~fd~vl~DaPCSg~G 313 (429)
.||.||+|.|-.-..
T Consensus 44 ~~D~viiD~~aG~~~ 58 (139)
T cd02038 44 DYDYIIIDTGAGISD 58 (139)
T ss_pred CCCEEEEECCCCCCH
T ss_conf 999999948999877
No 285
>KOG0780 consensus
Probab=53.99 E-value=16 Score=16.53 Aligned_cols=115 Identities=17% Similarity=0.306 Sum_probs=60.6
Q ss_pred CCHHHHH---HHHHHCCCC---EEHHHHCC-HHHHHHHHHHHHHCCCCCCEEEECCC-------CCCC-CCCCCCEEEEC
Q ss_conf 8827999---999861688---10055249-89999999998750288608821554-------3445-72324678962
Q gi|254780634|r 242 GGGKTLA---LSMLLNNKG---QIHAWDNN-KSRMAPIVARIKRAGIHNVQLHSSWE-------SLRN-LQEHFTTVLVD 306 (429)
Q Consensus 242 pGGKt~~---la~~~~~~g---~i~A~D~~-~~Rl~~l~~~~~r~g~~~v~~~~~~~-------~~~~-~~~~fd~vl~D 306 (429)
-+|||+. +|.....+| .++|.|.. +.-...|+.|+.+.++..+--.+..+ .... -++.||.||||
T Consensus 111 G~GKTTtc~KlA~y~kkkG~K~~LvcaDTFRagAfDQLkqnA~k~~iP~ygsyte~dpv~ia~egv~~fKke~fdvIIvD 190 (483)
T KOG0780 111 GSGKTTTCTKLAYYYKKKGYKVALVCADTFRAGAFDQLKQNATKARVPFYGSYTEADPVKIASEGVDRFKKENFDVIIVD 190 (483)
T ss_pred CCCCCEEHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHCCEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEE
T ss_conf 78863008999999984687245776022453068999987674077068403665558999999998886397289982
Q ss_pred CCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHCHHHHHHHHHHC
Q ss_conf 75445044444223667249678999999878999999996089838999775888242999899999857
Q gi|254780634|r 307 APCSGTGTWRRRPDIKWRLSQKNLIERTEEQKKILEESAQFVRPEGYLVYITCSILPEENIQQINYFLSKN 377 (429)
Q Consensus 307 aPCSg~G~~rr~Pe~~w~~~~~~~~~~~~lQ~~iL~~a~~~lk~gG~lvYsTCS~~~~Ene~vv~~fL~~~ 377 (429)
- || || +...+-+++ +...++.++|.-+ +|..=+-.-.+-|+|..+|=+.-
T Consensus 191 T--SG-----Rh-----~qe~sLfeE--------M~~v~~ai~Pd~v-i~VmDasiGQaae~Qa~aFk~~v 240 (483)
T KOG0780 191 T--SG-----RH-----KQEASLFEE--------MKQVSKAIKPDEI-IFVMDASIGQAAEAQARAFKETV 240 (483)
T ss_pred C--CC-----CH-----HHHHHHHHH--------HHHHHHHCCCCEE-EEEEECCCCHHHHHHHHHHHHHH
T ss_conf 7--87-----30-----124899999--------9999851598738-99985620076799999887761
No 286
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=53.28 E-value=16 Score=16.45 Aligned_cols=121 Identities=17% Similarity=0.243 Sum_probs=61.2
Q ss_pred CCHHHHHHHHH---HCCCC---EEHHHHCCH-HHHHHHHHHHHHCCCCCCEEEECCCC--C------CCCCCCCCEEEEC
Q ss_conf 88279999998---61688---100552498-99999999987502886088215543--4------4572324678962
Q gi|254780634|r 242 GGGKTLALSML---LNNKG---QIHAWDNNK-SRMAPIVARIKRAGIHNVQLHSSWES--L------RNLQEHFTTVLVD 306 (429)
Q Consensus 242 pGGKt~~la~~---~~~~g---~i~A~D~~~-~Rl~~l~~~~~r~g~~~v~~~~~~~~--~------~~~~~~fd~vl~D 306 (429)
-=|||+-|+-+ +...| .+.|.|.-. --++.|+.-.+|+|+..|.-..+.+. . ..-...+|.||+|
T Consensus 149 G~GKTTTIaKLA~~l~~~g~~VllaA~DTFRAaAiEQL~~w~er~gv~vI~~~~G~DpAaVafDAi~~Akar~~DvvliD 228 (340)
T COG0552 149 GVGKTTTIAKLAKYLKQQGKSVLLAAGDTFRAAAIEQLEVWGERLGVPVISGKEGADPAAVAFDAIQAAKARGIDVVLID 228 (340)
T ss_pred CCCHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHHHHCCEEECCCCCCCCHHHHHHHHHHHHHCCCCEEEEE
T ss_conf 88637179999999997898699982334789999999999999599278259999808999999999997699999996
Q ss_pred CCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHCHHHHHHHHHHC
Q ss_conf 75445044444223667249678999999878999999996089838999775888242999899999857
Q gi|254780634|r 307 APCSGTGTWRRRPDIKWRLSQKNLIERTEEQKKILEESAQFVRPEGYLVYITCSILPEENIQQINYFLSKN 377 (429)
Q Consensus 307 aPCSg~G~~rr~Pe~~w~~~~~~~~~~~~lQ~~iL~~a~~~lk~gG~lvYsTCS~~~~Ene~vv~~fL~~~ 377 (429)
- -|.+. -...-+++|.++.+-+-..... .|.-.|+-- =+..=.-.-.|++.|=+--
T Consensus 229 T----AGRLh--------nk~nLM~EL~KI~rV~~k~~~~--ap~e~llvl-DAttGqnal~QAk~F~eav 284 (340)
T COG0552 229 T----AGRLH--------NKKNLMDELKKIVRVIKKDDPD--APHEILLVL-DATTGQNALSQAKIFNEAV 284 (340)
T ss_pred C----CCCCC--------CCHHHHHHHHHHHHHHCCCCCC--CCCEEEEEE-ECCCCHHHHHHHHHHHHHC
T ss_conf 7----55445--------7366899999999984645689--984289997-7564756899999998752
No 287
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein; InterPro: IPR005670 This is a family of phosphate transport system permease proteins.; GO: 0005315 inorganic phosphate transmembrane transporter activity, 0015114 phosphate transmembrane transporter activity, 0006817 phosphate transport, 0016020 membrane.
Probab=52.27 E-value=12 Score=17.39 Aligned_cols=45 Identities=18% Similarity=0.132 Sum_probs=29.5
Q ss_pred CCCEEEECCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHH
Q ss_conf 246789627544504444422366724967899999987899999999608983899977588824
Q gi|254780634|r 299 HFTTVLVDAPCSGTGTWRRRPDIKWRLSQKNLIERTEEQKKILEESAQFVRPEGYLVYITCSILPE 364 (429)
Q Consensus 299 ~fd~vl~DaPCSg~G~~rr~Pe~~w~~~~~~~~~~~~lQ~~iL~~a~~~lk~gG~lvYsTCS~~~~ 364 (429)
..+.+|+|=|||.+ .|....+.-+| ..-||..=++|=.|=++..+
T Consensus 162 ePeVlLlDEPTSAL-------------DPIaT~~IEeL--------i~eLk~~YTivIVTHnMqQA 206 (248)
T TIGR00972 162 EPEVLLLDEPTSAL-------------DPIATGKIEEL--------IQELKKKYTIVIVTHNMQQA 206 (248)
T ss_pred CCCEECCCCCCCCC-------------CHHHHHHHHHH--------HHHHHHCCEEEEEECCHHHH
T ss_conf 88521057888757-------------87789999999--------99876529799881775678
No 288
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=52.06 E-value=17 Score=16.33 Aligned_cols=19 Identities=21% Similarity=0.365 Sum_probs=12.4
Q ss_pred CCEEEECCCCCCCHHHHHHH
Q ss_conf 46789627544504444422
Q gi|254780634|r 300 FTTVLVDAPCSGTGTWRRRP 319 (429)
Q Consensus 300 fd~vl~DaPCSg~G~~rr~P 319 (429)
=..|++| -|-..|.++++-
T Consensus 361 ~GhV~id-lC~~dg~le~~l 379 (484)
T COG5459 361 KGHVMID-LCAPDGELEEWL 379 (484)
T ss_pred CCEEEEE-ECCCCCHHHHHC
T ss_conf 9848886-217753265511
No 289
>KOG3987 consensus
Probab=51.82 E-value=12 Score=17.43 Aligned_cols=119 Identities=19% Similarity=0.284 Sum_probs=66.4
Q ss_pred CCEEEECCCCCCHHHHHHHHHHCCCCEEHHHHCCHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCCEEEECCCCCC
Q ss_conf 62586013468827999999861688100552498999999999875028860882155434457232467896275445
Q gi|254780634|r 232 SSQILDFCAGGGGKTLALSMLLNNKGQIHAWDNNKSRMAPIVARIKRAGIHNVQLHSSWESLRNLQEHFTTVLVDAPCSG 311 (429)
Q Consensus 232 g~~vLD~CAapGGKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~~~~~~~~~~~fd~vl~DaPCSg 311 (429)
..++||+.||-|--|.+|+--.. .|+|.+.|..- +.+++..+......... . ...-+||.|++
T Consensus 113 ~~~lLDlGAGdGeit~~m~p~fe---evyATElS~tM----r~rL~kk~ynVl~~~ew-~---~t~~k~dli~c------ 175 (288)
T KOG3987 113 PVTLLDLGAGDGEITLRMAPTFE---EVYATELSWTM----RDRLKKKNYNVLTEIEW-L---QTDVKLDLILC------ 175 (288)
T ss_pred CEEEEECCCCCCCHHHHHCCHHH---HHHHHHHHHHH----HHHHHHCCCCEEEEHHH-H---HCCCEEEHHHH------
T ss_conf 70688616788610012142189---99998766999----99986527736650033-3---13722315888------
Q ss_pred CHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCC-CCEEEEEEC--------------CCCH---HHC-----HH
Q ss_conf 044444223667249678999999878999999996089-838999775--------------8882---429-----99
Q gi|254780634|r 312 TGTWRRRPDIKWRLSQKNLIERTEEQKKILEESAQFVRP-EGYLVYITC--------------SILP---EEN-----IQ 368 (429)
Q Consensus 312 ~G~~rr~Pe~~w~~~~~~~~~~~~lQ~~iL~~a~~~lk~-gG~lvYsTC--------------S~~~---~En-----e~ 368 (429)
.-.+-|+=+ | .++|+.-+..++| .|+++-|-- +.-| -|| |+
T Consensus 176 lNlLDRc~~------p----------~kLL~Di~~vl~psngrvivaLVLP~~hYVE~N~~g~~~rPdn~Le~~Gr~~ee 239 (288)
T KOG3987 176 LNLLDRCFD------P----------FKLLEDIHLVLAPSNGRVIVALVLPYMHYVETNTSGLPLRPDNLLENNGRSFEE 239 (288)
T ss_pred HHHHHHHCC------H----------HHHHHHHHHHHCCCCCCEEEEEEECCCCEEECCCCCCCCCCHHHHHHCCCCHHH
T ss_conf 778875067------6----------779999999846478848999984242114307899868806888735853899
Q ss_pred HHHHHHH--HCCCCEEE
Q ss_conf 8999998--57997994
Q gi|254780634|r 369 QINYFLS--KNPHFSID 383 (429)
Q Consensus 369 vv~~fL~--~~~~~~~~ 383 (429)
.|..|.+ ++-+|.++
T Consensus 240 ~v~~~~e~lr~~g~~ve 256 (288)
T KOG3987 240 EVARFMELLRNCGYRVE 256 (288)
T ss_pred HHHHHHHHHHHCCCHHH
T ss_conf 99889999986370244
No 290
>PRK10963 hypothetical protein; Provisional
Probab=51.76 E-value=7.8 Score=18.58 Aligned_cols=10 Identities=30% Similarity=0.179 Sum_probs=4.1
Q ss_pred CCHHHHHHHH
Q ss_conf 8827999999
Q gi|254780634|r 242 GGGKTLALSM 251 (429)
Q Consensus 242 pGGKt~~la~ 251 (429)
|+-=|+.|..
T Consensus 198 ~~mgTlFL~~ 207 (223)
T PRK10963 198 QGQGTQLLKE 207 (223)
T ss_pred CCCCHHHHHH
T ss_conf 9866399999
No 291
>PRK10919 ATP-dependent DNA helicase Rep; Provisional
Probab=51.44 E-value=17 Score=16.26 Aligned_cols=13 Identities=8% Similarity=-0.066 Sum_probs=5.1
Q ss_pred HHHHHHHHHHCCC
Q ss_conf 9999999875028
Q gi|254780634|r 269 MAPIVARIKRAGI 281 (429)
Q Consensus 269 l~~l~~~~~r~g~ 281 (429)
...+.+-+.+.|+
T Consensus 355 ~~~le~~L~~~~I 367 (672)
T PRK10919 355 SRVFEKFLMQNRI 367 (672)
T ss_pred HHHHHHHHHHCCC
T ss_conf 2689999997799
No 292
>PRK07576 short chain dehydrogenase; Provisional
Probab=51.03 E-value=17 Score=16.22 Aligned_cols=50 Identities=14% Similarity=0.315 Sum_probs=26.6
Q ss_pred CCEEEECCCCCCHHHHHHHHHHCCC-CEEHHHHCCHHHHHHHHHHHHHCCCC
Q ss_conf 6258601346882799999986168-81005524989999999998750288
Q gi|254780634|r 232 SSQILDFCAGGGGKTLALSMLLNNK-GQIHAWDNNKSRMAPIVARIKRAGIH 282 (429)
Q Consensus 232 g~~vLD~CAapGGKt~~la~~~~~~-g~i~A~D~~~~Rl~~l~~~~~r~g~~ 282 (429)
|..+|=.- |.+|==..++..+... ..|+.+|.++.+++...+.++..|..
T Consensus 8 gK~alVTG-gs~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~l~~~~~~ 58 (260)
T PRK07576 8 GKNVFVVG-GTSGINLGIAQAFARAGANVAVASRSQEKVDAAVAQLQQAGPE 58 (260)
T ss_pred CCEEEEEC-CCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCC
T ss_conf 99899958-9619999999999987999999979889999999999953994
No 293
>PRK06101 short chain dehydrogenase; Provisional
Probab=49.70 E-value=18 Score=16.08 Aligned_cols=19 Identities=11% Similarity=0.148 Sum_probs=10.5
Q ss_pred CEEHHHHCCHHHHHHHHHH
Q ss_conf 8100552498999999999
Q gi|254780634|r 257 GQIHAWDNNKSRMAPIVAR 275 (429)
Q Consensus 257 g~i~A~D~~~~Rl~~l~~~ 275 (429)
..|+.++.++.+++.+.+.
T Consensus 26 ~~Vi~~~R~~~~l~~~~~~ 44 (241)
T PRK06101 26 WKVIACGRNEAVLDELHDQ 44 (241)
T ss_pred CEEEEEECCHHHHHHHHHH
T ss_conf 9899998999999999973
No 294
>PRK09468 ompR osmolarity response regulator; Provisional
Probab=49.39 E-value=11 Score=17.52 Aligned_cols=24 Identities=17% Similarity=0.196 Sum_probs=8.1
Q ss_pred EEHHHHCCHHHHHHHHHHHHHCCC
Q ss_conf 100552498999999999875028
Q gi|254780634|r 258 QIHAWDNNKSRMAPIVARIKRAGI 281 (429)
Q Consensus 258 ~i~A~D~~~~Rl~~l~~~~~r~g~ 281 (429)
+|.-+|-++.-...+...++..|.
T Consensus 7 kILiVEDd~~~~~~l~~~L~~~g~ 30 (239)
T PRK09468 7 KILVVDDDMRLRALLERYLTEQGF 30 (239)
T ss_pred EEEEEECCHHHHHHHHHHHHHCCC
T ss_conf 899990999999999999998899
No 295
>pfam04340 DUF484 Protein of unknown function, DUF484. This family consists of several proteins of uncharacterized function.
Probab=48.93 E-value=9.8 Score=17.91 Aligned_cols=10 Identities=20% Similarity=0.331 Sum_probs=4.6
Q ss_pred HHHHHHHHCC
Q ss_conf 9999998685
Q gi|254780634|r 27 SLKDWGMSHR 36 (429)
Q Consensus 27 ~L~~~~~~~r 36 (429)
.+..|+++|+
T Consensus 10 ~V~~yL~~nP 19 (219)
T pfam04340 10 DVADYLRQHP 19 (219)
T ss_pred HHHHHHHHCC
T ss_conf 9999999695
No 296
>PTZ00336 elongation factor 1-alpha; Provisional
Probab=48.79 E-value=19 Score=15.99 Aligned_cols=14 Identities=0% Similarity=-0.028 Sum_probs=6.8
Q ss_pred CCCCCEEEECCCCCCHH
Q ss_conf 66662586013468827
Q gi|254780634|r 229 ITNSSQILDFCAGGGGK 245 (429)
Q Consensus 229 ~~~g~~vLD~CAapGGK 245 (429)
.+.|+.|. -.|.|+
T Consensus 260 v~~Gd~V~---i~Ps~~ 273 (449)
T PTZ00336 260 MKPGDVVT---FAPANV 273 (449)
T ss_pred CCCCCEEE---ECCCCC
T ss_conf 05899999---917998
No 297
>cd01976 Nitrogenase_MoFe_alpha Nitrogenase_MoFe_alpha_II: Nitrogenase MoFe protein, beta subunit. A group of proteins similar to the alpha subunit of the MoFe protein of the molybdenum (Mo-) nitrogenase. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Mo-nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=48.71 E-value=19 Score=16.00 Aligned_cols=24 Identities=8% Similarity=-0.000 Sum_probs=15.2
Q ss_pred EECCCCHHHCHHHHHHHHHHCCCCEEE
Q ss_conf 775888242999899999857997994
Q gi|254780634|r 357 ITCSILPEENIQQINYFLSKNPHFSID 383 (429)
Q Consensus 357 sTCS~~~~Ene~vv~~fL~~~~~~~~~ 383 (429)
.+...++.|-|+.++ +..||.-+-
T Consensus 352 iidd~~~~Ele~~i~---~~~pDl~l~ 375 (421)
T cd01976 352 LYDDVTHYELEEFVK---RLKPDLIGS 375 (421)
T ss_pred EEECCCHHHHHHHHH---HCCCCEEEE
T ss_conf 972799999999998---539999995
No 298
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=48.08 E-value=19 Score=15.92 Aligned_cols=45 Identities=13% Similarity=0.293 Sum_probs=28.2
Q ss_pred CCCCCEEEECCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHC-CCCEEEEEECCCC
Q ss_conf 23246789627544504444422366724967899999987899999999608-9838999775888
Q gi|254780634|r 297 QEHFTTVLVDAPCSGTGTWRRRPDIKWRLSQKNLIERTEEQKKILEESAQFVR-PEGYLVYITCSIL 362 (429)
Q Consensus 297 ~~~fd~vl~DaPCSg~G~~rr~Pe~~w~~~~~~~~~~~~lQ~~iL~~a~~~lk-~gG~lvYsTCS~~ 362 (429)
-...+.|++|-|-||+- |-++ ++|..+..-++ .|-.++|||--+.
T Consensus 146 iHePeLlILDEPFSGLD-------------PVN~--------elLk~~I~~lk~~GatIifSsH~Me 191 (300)
T COG4152 146 IHEPELLILDEPFSGLD-------------PVNV--------ELLKDAIFELKEEGATIIFSSHRME 191 (300)
T ss_pred HCCCCEEEECCCCCCCC-------------HHHH--------HHHHHHHHHHHHCCCEEEEECCHHH
T ss_conf 52887799668866887-------------2329--------9999999998735877998533378
No 299
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=47.51 E-value=20 Score=15.86 Aligned_cols=74 Identities=19% Similarity=0.186 Sum_probs=39.1
Q ss_pred EEEECCCCCC--HHHHHHHHHH------CC--CCEEHHHHCC-HHHHHHHHHHHHHCCCCCCEEEECCCCCCCC--CCCC
Q ss_conf 5860134688--2799999986------16--8810055249-8999999999875028860882155434457--2324
Q gi|254780634|r 234 QILDFCAGGG--GKTLALSMLL------NN--KGQIHAWDNN-KSRMAPIVARIKRAGIHNVQLHSSWESLRNL--QEHF 300 (429)
Q Consensus 234 ~vLD~CAapG--GKt~~la~~~------~~--~g~i~A~D~~-~~Rl~~l~~~~~r~g~~~v~~~~~~~~~~~~--~~~f 300 (429)
+|+ +..||= |||+-+|-+. .+ +--++..|.+ -.-.+.|+.-++-+|+..-.+.+..+....+ -..+
T Consensus 195 ~vi-~lvGPTGVGKTTTiAKLAa~~~l~~~~~~V~lIT~DtyRigA~eQLk~ya~il~vp~~vv~~~~~l~~~l~~~~~~ 273 (282)
T TIGR03499 195 GVI-ALVGPTGVGKTTTLAKLAARFVLEHGKKKVALITTDTYRIGAVEQLKTYAKILGVPVKVARDPKELAKALERLRDK 273 (282)
T ss_pred CEE-EEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCEEEEECCHHHHHHHHHHCCCC
T ss_conf 279-9977888757889999999999973899679998077767899999999999597489939999999999865798
Q ss_pred CEEEECCC
Q ss_conf 67896275
Q gi|254780634|r 301 TTVLVDAP 308 (429)
Q Consensus 301 d~vl~DaP 308 (429)
|.||+|-|
T Consensus 274 d~IlIDTa 281 (282)
T TIGR03499 274 DLILIDTA 281 (282)
T ss_pred CEEEEECC
T ss_conf 99998197
No 300
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit; InterPro: IPR006344 This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. C-terminal part of the protein matches a domain found in viral RNA helicase, superfamily 1, IPR000606 from INTERPRO. ; GO: 0008854 exodeoxyribonuclease V activity, 0009338 exodeoxyribonuclease V complex.
Probab=47.51 E-value=12 Score=17.43 Aligned_cols=67 Identities=19% Similarity=0.164 Sum_probs=31.0
Q ss_pred CCCCCCHHHH-HHHHHHCCCCEEHHH---HCCHHHHHHHH---HHHHH-CCCCCCEEEECCCCC-CCCCCCCCEEEEC
Q ss_conf 1346882799-999986168810055---24989999999---99875-028860882155434-4572324678962
Q gi|254780634|r 238 FCAGGGGKTL-ALSMLLNNKGQIHAW---DNNKSRMAPIV---ARIKR-AGIHNVQLHSSWESL-RNLQEHFTTVLVD 306 (429)
Q Consensus 238 ~CAapGGKt~-~la~~~~~~g~i~A~---D~~~~Rl~~l~---~~~~r-~g~~~v~~~~~~~~~-~~~~~~fd~vl~D 306 (429)
.=+||=||+. ||.+.+...-.=.+. -+++..+..+. ..++| +|...|. ...... ..-.-.+|.++||
T Consensus 281 ~l~APTGKAa~RL~esl~~~~~~L~~~~~aid~~~~~~~~~~~~TiHrLLG~~~I~--~~~fr~h~~N~L~~DVLvvD 356 (753)
T TIGR01447 281 ALAAPTGKAAARLAESLRKAVKKLAAENMAIDEDLIAALPSEATTIHRLLGIKPID--TKRFRHHERNPLPLDVLVVD 356 (753)
T ss_pred EEECCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCHHHHHHHHHHCCCCCC--CCCCCCCCCCCCCCCEEEEC
T ss_conf 88668447999999999988632234236658798548720456888861661478--76776777788985527870
No 301
>COG1861 SpsF Spore coat polysaccharide biosynthesis protein F, CMP-KDO synthetase homolog [Cell envelope biogenesis, outer membrane]
Probab=47.50 E-value=20 Score=15.86 Aligned_cols=64 Identities=25% Similarity=0.444 Sum_probs=46.8
Q ss_pred CCCCCEEEECCCCCCCHHHHHHHHHHHHC-CHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHCHHHHHHHHH
Q ss_conf 23246789627544504444422366724-96789999998789999999960898389997758882429998999998
Q gi|254780634|r 297 QEHFTTVLVDAPCSGTGTWRRRPDIKWRL-SQKNLIERTEEQKKILEESAQFVRPEGYLVYITCSILPEENIQQINYFLS 375 (429)
Q Consensus 297 ~~~fd~vl~DaPCSg~G~~rr~Pe~~w~~-~~~~~~~~~~lQ~~iL~~a~~~lk~gG~lvYsTCS~~~~Ene~vv~~fL~ 375 (429)
.+.|-..-+++|| ..++|+.||.. +++|++....++.. + |..++.=.-++|-.||+
T Consensus 168 P~~fk~~~l~~p~-----~~~~~~~RltvDt~eD~~~~~~vye~--------~----------~~~~~~~~~d~iid~ld 224 (241)
T COG1861 168 PERFKVAYLEAPE-----AWKRPDYRLTVDTQEDFALAKAVYEY--------F----------CPENPDFTLDNIIDFLD 224 (241)
T ss_pred CCEEEEEEECCHH-----HCCCCCEEEEECCHHHHHHHHHHHHH--------H----------CCCCCCCCHHHHHHHHH
T ss_conf 7607897654732-----22687647884639999999999997--------1----------74689975899999996
Q ss_pred HCCCCEEE
Q ss_conf 57997994
Q gi|254780634|r 376 KNPHFSID 383 (429)
Q Consensus 376 ~~~~~~~~ 383 (429)
++|+....
T Consensus 225 ~npdia~~ 232 (241)
T COG1861 225 KNPDIAVI 232 (241)
T ss_pred CCCHHHHH
T ss_conf 39246675
No 302
>cd03067 PDI_b_PDIR_N PDIb family, PDIR subfamily, N-terminal TRX-like b domain; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity. The TRX-like b domain of PDIR is critical for its chaperone activity.
Probab=47.39 E-value=20 Score=15.85 Aligned_cols=36 Identities=28% Similarity=0.466 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHCHHHHH
Q ss_conf 99878999999996089838999775888242999899
Q gi|254780634|r 334 TEEQKKILEESAQFVRPEGYLVYITCSILPEENIQQIN 371 (429)
Q Consensus 334 ~~lQ~~iL~~a~~~lk~gG~lvYsTCS~~~~Ene~vv~ 371 (429)
+.-+..++.++++.++--|+|+|.-|+ ..|.-..-.
T Consensus 33 a~~~Lk~~~~~A~~ikG~GT~~~vDC~--d~e~kKLCK 68 (112)
T cd03067 33 AEALLKLLSDVAQAVKGQGTIAWIDCG--DSESRKLCK 68 (112)
T ss_pred HHHHHHHHHHHHHHHCCCEEEEEEECC--CCHHHHHHH
T ss_conf 788999999999984472169999737--607788888
No 303
>pfam07091 FmrO Ribosomal RNA methyltransferase (FmrO). This family consists of several bacterial ribosomal RNA methyltransferase (aminoglycoside-resistance methyltransferase) proteins.
Probab=46.79 E-value=18 Score=16.11 Aligned_cols=72 Identities=18% Similarity=0.184 Sum_probs=38.0
Q ss_pred CCCEEEECCCCCCHHHHHHHHHHCCCCEEHHHHCCHHHHHHHHHHHHHCCCC-CCEEEECCCCCCCCCCCCCEEEE
Q ss_conf 6625860134688279999998616881005524989999999998750288-60882155434457232467896
Q gi|254780634|r 231 NSSQILDFCAGGGGKTLALSMLLNNKGQIHAWDNNKSRMAPIVARIKRAGIH-NVQLHSSWESLRNLQEHFTTVLV 305 (429)
Q Consensus 231 ~g~~vLD~CAapGGKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~-~v~~~~~~~~~~~~~~~fd~vl~ 305 (429)
+..+|+|+.||--==++--... ......+|.|++..=+.-+..-+.++|+. ++.+. |....+..+..|..|+
T Consensus 102 ~p~sVlDlaCGlNPLa~pwm~~-~~~~~Y~a~DId~~~i~fi~~~l~~l~v~~~~~~~--Dl~~~~p~~~~DvaLl 174 (248)
T pfam07091 102 PPRSVLDLACGLNPLAVPWMPL-APDATYHAYDIDRALIEFIRAFLALLGVPGEVRVR--DLLTDPPAEPADVALL 174 (248)
T ss_pred CCCEEEEECCCCCCCCCCCCCC-CCCCEEEEEECCHHHHHHHHHHHHHCCCCCCEEEE--EECCCCCCCCCCCHHH
T ss_conf 9864420002688301423368-99867999707778999999999862987637987--6104799887340047
No 304
>TIGR00057 TIGR00057 Sua5/YciO/YrdC/YwlC family protein; InterPro: IPR004388 This entry includes the Sua5, YciO, YrdC and YwlC proteins. The yrdC family of genes codes for proteins that occur both independently and as a domain in proteins that have been implicated in regulation. An example for the latter case is the sua5 gene from yeast. Sua5 was identified as a suppressor of a translation initiation defect in cytochrome c and is required for normal growth in yeast . However, the function of the Sua5 protein remains unknown; Sua5 could act either at the transcriptional or the post-transcriptional levels to compensate for an aberrant translation start codon in the cyc gene. The crystal structure of the YrdC protein from Escherichia coli was determined at a resolution of 2.0 A. It structure suggests that YrdC may be a nucleic acid binding protein. An investigation of YrdC's binding affinities for single- and double-stranded RNA and DNA fragments as well as tRNAs demonstrates that YrdC binds preferentially to double-stranded RNA . .
Probab=46.39 E-value=13 Score=17.19 Aligned_cols=18 Identities=33% Similarity=0.307 Sum_probs=7.8
Q ss_pred CHHHHHHHHHHCCCCCCCC
Q ss_conf 4489999998628986111
Q gi|254780634|r 139 KDTWLKEAKSLSMRAPLDL 157 (429)
Q Consensus 139 ge~~~~~l~a~~~~~pl~i 157 (429)
.+.+..+|+.|- |=|+++
T Consensus 79 ~~~A~~Lm~~f~-PGplT~ 96 (215)
T TIGR00057 79 PDDAKKLMKKFL-PGPLTL 96 (215)
T ss_pred CHHHHHHHHHCC-CCCCEE
T ss_conf 557999998608-996248
No 305
>PRK13435 response regulator; Provisional
Probab=46.34 E-value=20 Score=15.74 Aligned_cols=109 Identities=15% Similarity=0.135 Sum_probs=66.5
Q ss_pred CEEHHHHCCHHHHHHHHHHHHHCCCCCCEEEECCCC-CCC-CCCCCCEEEECC--C--CCCCHHHHH---HHHHHHH-CC
Q ss_conf 810055249899999999987502886088215543-445-723246789627--5--445044444---2236672-49
Q gi|254780634|r 257 GQIHAWDNNKSRMAPIVARIKRAGIHNVQLHSSWES-LRN-LQEHFTTVLVDA--P--CSGTGTWRR---RPDIKWR-LS 326 (429)
Q Consensus 257 g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~~~~-~~~-~~~~fd~vl~Da--P--CSg~G~~rr---~Pe~~w~-~~ 326 (429)
-+|.-+|-+..=...++..++..|+..+........ ..- -...+|.||+|. | .||.-+.|+ ++++.-- +|
T Consensus 2 mRILIVEDe~~i~~~l~~~L~~~G~~vv~~A~~~~eAl~~~~~~~PDlvllDi~LpdG~~G~e~~r~l~~~~~ipvI~lT 81 (141)
T PRK13435 2 LRVLIVEDEALIALELEKLLEEAGHQVVGIASTSEQALALGRRAQPDVALVDIRLADGPTGVEVARRLSIDGGVEVIFMT 81 (141)
T ss_pred CEEEEECCCHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCCCEEEECCCCCCCCCHHHHHHHHHHCCCCCEEEEE
T ss_conf 78999899899999999999987997999759999999997659998999788789999899999999875998389997
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHCHHHHHHHHHHCCC
Q ss_conf 67899999987899999999608983899977588824299989999985799
Q gi|254780634|r 327 QKNLIERTEEQKKILEESAQFVRPEGYLVYITCSILPEENIQQINYFLSKNPH 379 (429)
Q Consensus 327 ~~~~~~~~~lQ~~iL~~a~~~lk~gG~lvYsTCS~~~~Ene~vv~~fL~~~~~ 379 (429)
- ..+..... .. |-.=|.+=-+.++|=...|+..++++-+
T Consensus 82 a---------~~d~~~~~----~a-GA~dyl~KPf~~~eL~~ai~~~~~rr~~ 120 (141)
T PRK13435 82 A---------NPERVGHD----FA-GALGVIAKPYSLRQVARALSYVAARRVD 120 (141)
T ss_pred C---------CHHHHHHH----HC-CCCCEEECCCCHHHHHHHHHHHHHHCCC
T ss_conf 7---------79986013----45-9985898999989999999999971568
No 306
>PTZ00141 elongation factor 1 alpha; Provisional
Probab=46.09 E-value=21 Score=15.71 Aligned_cols=14 Identities=7% Similarity=-0.118 Sum_probs=6.1
Q ss_pred CCCCEEEECCCCCCHHH
Q ss_conf 66625860134688279
Q gi|254780634|r 230 TNSSQILDFCAGGGGKT 246 (429)
Q Consensus 230 ~~g~~vLD~CAapGGKt 246 (429)
+.|+.|.= .|.|++
T Consensus 259 ~~Gd~v~i---~Ps~~~ 272 (443)
T PTZ00141 259 KAGMVLTF---APSAVT 272 (443)
T ss_pred ECCCEEEE---CCCCCE
T ss_conf 56978998---779988
No 307
>PRK06949 short chain dehydrogenase; Provisional
Probab=45.91 E-value=21 Score=15.70 Aligned_cols=49 Identities=18% Similarity=0.233 Sum_probs=28.4
Q ss_pred CCEEEECCCCCC-HHHHHHHHHH-CCCCEEHHHHCCHHHHHHHHHHHHHCCCC
Q ss_conf 625860134688-2799999986-16881005524989999999998750288
Q gi|254780634|r 232 SSQILDFCAGGG-GKTLALSMLL-NNKGQIHAWDNNKSRMAPIVARIKRAGIH 282 (429)
Q Consensus 232 g~~vLD~CAapG-GKt~~la~~~-~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~ 282 (429)
|..+|=.-|+.| |+.+ |..+ .....|+.+|.+..+++.+.+.++..|..
T Consensus 9 gKvalVTGas~GIG~ai--A~~la~~Ga~V~i~~~~~~~~~~~~~~i~~~g~~ 59 (258)
T PRK06949 9 GKVALVTGASSGLGQRF--AQVLSQAGAKVVLASRRVERLKELRAEIEAEGGA 59 (258)
T ss_pred CCEEEEECCCCHHHHHH--HHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCC
T ss_conf 99899958577999999--9999987999999969889999999999965992
No 308
>pfam09140 MipZ ATPase MipZ. MipZ is an ATPase that forms a complex with the chromosome partitioning protein ParB near the chromosomal origin of replication. It is responsible for the temporal and spatial regulation of FtsZ ring formation.
Probab=44.87 E-value=22 Score=15.59 Aligned_cols=38 Identities=13% Similarity=0.154 Sum_probs=27.8
Q ss_pred CCEEEEEECCCCHHHCHHHHHHHHHH---CCCCEEEECCCC
Q ss_conf 83899977588824299989999985---799799414300
Q gi|254780634|r 351 EGYLVYITCSILPEENIQQINYFLSK---NPHFSIDSIIDD 388 (429)
Q Consensus 351 gG~lvYsTCS~~~~Ene~vv~~fL~~---~~~~~~~~~~~~ 388 (429)
.++++---+|-...-|..-++..|+. .-+|++.+...+
T Consensus 174 dwivlrnRl~~~~~rnk~~~~~~l~~Ls~rigfr~~~g~~e 214 (261)
T pfam09140 174 DWIVLRNRLSTLEARNKRRVEDALNELSKRVGFRVAPGFSE 214 (261)
T ss_pred CEEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCH
T ss_conf 47998056218887888999999999976407522577431
No 309
>TIGR02028 ChlP geranylgeranyl reductase; InterPro: IPR011774 This entry represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll..
Probab=44.50 E-value=21 Score=15.63 Aligned_cols=194 Identities=14% Similarity=0.193 Sum_probs=89.4
Q ss_pred HHCCCHHHHHHHHHHC----CHH-HHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHH-HHC--CCCCCCCCCCCCCCCCCC
Q ss_conf 5089988999999857----448-99999986289861112477889989999989-871--887545475431134566
Q gi|254780634|r 123 QGNIPQWLQSSFQSYF----KDT-WLKEAKSLSMRAPLDLRTNTLKVNRCKLFKNL-CHY--GVHHSSISRFGLRIPATK 194 (429)
Q Consensus 123 ~~s~P~WL~~~~~~~~----ge~-~~~~l~a~~~~~pl~iRvN~~k~~~~~~~~~L-~~~--gi~~~~~~~~~~~l~~~~ 194 (429)
++++|.-|+++=...+ |.+ ..++-.++.+...+-. -|.|+++.+ .+. ....+-++..-+.+....
T Consensus 50 EF~lP~d~iDRRV~kMk~~SPSN~~~d~gr~L~~~~yIgM-------~RREVLDsflR~RA~~~GA~li~Glv~~l~~P~ 122 (401)
T TIGR02028 50 EFDLPRDIIDRRVTKMKMISPSNIAVDIGRTLKEHEYIGM-------VRREVLDSFLRERAADAGATLINGLVLKLELPA 122 (401)
T ss_pred HHCCCHHHHHCCCCEEEEECCCCHHHHHHCCCCCCCCCCC-------HHHHHHHHHHHHHHHHCCCEEECCEEEEECCCC
T ss_conf 1037866751211022421641013320002788761251-------457888899999998648814144457631778
Q ss_pred CCCCCCCHHCCHHHCCCEEEEECCCCCCCCCCCCCCCCCEE--EECCCCCCHHHHHHHHHHCCCCEEHHHHCCHHHHHH-
Q ss_conf 54446101109631265489841556542112366666258--601346882799999986168810055249899999-
Q gi|254780634|r 195 GKSRLPNVMNDITFQRGWFEIQDEGSQIVSNLTAITNSSQI--LDFCAGGGGKTLALSMLLNNKGQIHAWDNNKSRMAP- 271 (429)
Q Consensus 195 ~~~~~~~~~~~~~f~~G~~~VQD~aSql~~~~l~~~~g~~v--LD~CAapGGKt~~la~~~~~~g~i~A~D~~~~Rl~~- 271 (429)
.....| |.- + +||.-++. ++.....+ .|+--|.-|=-.-+|. .|-|.|-+.--.-+
T Consensus 123 ~p~~~P-------Y~l-H-Y~~~Dg~~------G~~g~~~~lEVD~VIGADGANSRvAk------~idAGDY~~AIAfQE 181 (401)
T TIGR02028 123 DPADDP-------YTL-H-YVEEDGKG------GASGTKKTLEVDAVIGADGANSRVAK------EIDAGDYDYAIAFQE 181 (401)
T ss_pred CCCCCC-------CEE-E-EEEECCCC------CCCCCCEEEEEEEEECCCCCCCHHHC------CCCCCCHHHHHHHHH
T ss_conf 887787-------178-9-87006875------87645406888778707875202311------137885234444332
Q ss_pred ----HHHHHHHCCCCCCEEEECCCCCCCCC----CCCCEEEECCCCCCCHHH-HHHHHHHHHCCHHHHHHHHHHHHHHHH
Q ss_conf ----99998750288608821554344572----324678962754450444-442236672496789999998789999
Q gi|254780634|r 272 ----IVARIKRAGIHNVQLHSSWESLRNLQ----EHFTTVLVDAPCSGTGTW-RRRPDIKWRLSQKNLIERTEEQKKILE 342 (429)
Q Consensus 272 ----l~~~~~r~g~~~v~~~~~~~~~~~~~----~~fd~vl~DaPCSg~G~~-rr~Pe~~w~~~~~~~~~~~~lQ~~iL~ 342 (429)
=.+.+.=+. .-.+....++-.+++. .++|.|=| ||||+ -.+++|| ++|..|=.
T Consensus 182 RIRlPde~MaYY~-dLAEMYVGdDVSPDFYgWVFPK~DHVAV-----GTGTvk~~K~~Ik------------~lQ~g~R~ 243 (401)
T TIGR02028 182 RIRLPDEKMAYYD-DLAEMYVGDDVSPDFYGWVFPKCDHVAV-----GTGTVKAAKDEIK------------KLQSGIRA 243 (401)
T ss_pred CCCCCCHHHHHHH-HHHHHCCCCCCCCCCCCCCCCCCCEEEE-----CCCEEEECCHHHH------------HHHHHHHH
T ss_conf 0368701123466-4333200788686634010677364773-----3531450507889------------99888878
Q ss_pred HHHHHHCCCCEEEEEECCCCH
Q ss_conf 999960898389997758882
Q gi|254780634|r 343 ESAQFVRPEGYLVYITCSILP 363 (429)
Q Consensus 343 ~a~~~lk~gG~lvYsTCS~~~ 363 (429)
+|..-+. ||.+|=.---..|
T Consensus 244 RA~~K~~-GG~iirVEAHPIP 263 (401)
T TIGR02028 244 RAADKVA-GGKIIRVEAHPIP 263 (401)
T ss_pred HHHHHHC-CCEEEEEECCCCC
T ss_conf 7886604-8808998134775
No 310
>pfam01959 DHQS 3-dehydroquinate synthase (EC 4.6.1.3). 3-Dehydroquinate synthase is an enzyme in the common pathway of aromatic amino acid biosynthesis that catalyses the conversion of 3-deoxy-D-arabino-heptulosonic acid 7-phosphate (DAHP) into 3-dehydroquinic acid. This synthesis of aromatic amino acids is an essential metabolic function for most prokaryotic as well as lower eukaryotic cells, including plants. The pathway is absent in humans; therefore, DHQS represents a potential target for the development of novel and selective antimicrobial agents. Owing to the threat posed by the spread of pathogenic bacteria resistant to many currently used antimicrobial drugs, there is clearly a need to develop new anti-infective drugs acting at novel targets. A further potential use for DHQS inhibitors is as herbicides.
Probab=44.06 E-value=9.8 Score=17.92 Aligned_cols=59 Identities=20% Similarity=0.213 Sum_probs=40.7
Q ss_pred HHCCCEEEEECCCCCCCCCCCCC---CCCCEEEECCCCCCHHHHHHHHHHCCCCEEHHHHCCHH
Q ss_conf 31265489841556542112366---66625860134688279999998616881005524989
Q gi|254780634|r 207 TFQRGWFEIQDEGSQIVSNLTAI---TNSSQILDFCAGGGGKTLALSMLLNNKGQIHAWDNNKS 267 (429)
Q Consensus 207 ~f~~G~~~VQD~aSql~~~~l~~---~~g~~vLD~CAapGGKt~~la~~~~~~g~i~A~D~~~~ 267 (429)
.|..|+|.|.-+.-..+=-...| ..| .|=-+|-.|||||..|+++-.+ ..|.++|.+.+
T Consensus 201 S~s~~lfLVhsEt~~s~Yv~~RPFRVNAG-aVHaYv~~p~g~T~YLsEL~sG-deVlvvd~~G~ 262 (343)
T pfam01959 201 SSSRGLFLVHSETLESPYVASRPFRVNAG-AVHAYVRVPGGKTRYLSELKAG-DEVLVVDADGR 262 (343)
T ss_pred CCCCEEEEEEECCCCCCCCCCCCEEECCC-CEEEEEECCCCCEEEEHHHCCC-CEEEEEECCCC
T ss_conf 13662799981333688878997233177-3057998289937873020589-86999978998
No 311
>PTZ00065 60S ribosomal protein L14; Provisional
Probab=43.97 E-value=11 Score=17.54 Aligned_cols=12 Identities=50% Similarity=0.606 Sum_probs=8.4
Q ss_pred CCEEEECCC-CCC
Q ss_conf 467896275-445
Q gi|254780634|r 300 FTTVLVDAP-CSG 311 (429)
Q Consensus 300 fd~vl~DaP-CSg 311 (429)
-.+||+|-| |||
T Consensus 34 ~nRvLVDGP~~tg 46 (130)
T PTZ00065 34 PTRVLVDGAFITG 46 (130)
T ss_pred CCEEEECCCCCCC
T ss_conf 7646740876678
No 312
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=43.79 E-value=22 Score=15.48 Aligned_cols=64 Identities=11% Similarity=0.112 Sum_probs=35.0
Q ss_pred CCCCCEEEECCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHCHHHHHHHHHH
Q ss_conf 23246789627544504444422366724967899999987899999999608983899977588824299989999985
Q gi|254780634|r 297 QEHFTTVLVDAPCSGTGTWRRRPDIKWRLSQKNLIERTEEQKKILEESAQFVRPEGYLVYITCSILPEENIQQINYFLSK 376 (429)
Q Consensus 297 ~~~fd~vl~DaPCSg~G~~rr~Pe~~w~~~~~~~~~~~~lQ~~iL~~a~~~lk~gG~lvYsTCS~~~~Ene~vv~~fL~~ 376 (429)
-...+.+++|-||||+-+ ..++ .+.++. .++=.+|-.++|||-.+. |=|+.-+.+.--
T Consensus 149 vh~P~i~vlDEP~sGLDi-------~~~r---~~~dfi----------~q~k~egr~viFSSH~m~--EvealCDrvivl 206 (245)
T COG4555 149 VHDPSILVLDEPTSGLDI-------RTRR---KFHDFI----------KQLKNEGRAVIFSSHIMQ--EVEALCDRVIVL 206 (245)
T ss_pred HCCCCEEEECCCCCCCCH-------HHHH---HHHHHH----------HHHHCCCCEEEEECCCHH--HHHHHHHEEEEE
T ss_conf 439876997689877427-------8799---999999----------985257948999613179--999861358997
Q ss_pred CCCCEE
Q ss_conf 799799
Q gi|254780634|r 377 NPHFSI 382 (429)
Q Consensus 377 ~~~~~~ 382 (429)
|.+=.+
T Consensus 207 h~Gevv 212 (245)
T COG4555 207 HKGEVV 212 (245)
T ss_pred ECCCEE
T ss_conf 468089
No 313
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=43.58 E-value=23 Score=15.46 Aligned_cols=117 Identities=14% Similarity=0.169 Sum_probs=61.5
Q ss_pred CCEEEECCCCCCHHHHHHHHHH-CCCCEEHHHHCCHHHHHHHHHHHHHCCCCCCEEEECCCCC-----------CCCCCC
Q ss_conf 6258601346882799999986-1688100552498999999999875028860882155434-----------457232
Q gi|254780634|r 232 SSQILDFCAGGGGKTLALSMLL-NNKGQIHAWDNNKSRMAPIVARIKRAGIHNVQLHSSWESL-----------RNLQEH 299 (429)
Q Consensus 232 g~~vLD~CAapGGKt~~la~~~-~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~~~~~-----------~~~~~~ 299 (429)
|.++|=.-|+.| ==..+|..+ .....|+.++.++.+++.+.+.+...| ++.....|... ....+.
T Consensus 5 gK~~lVTGas~G-IG~aiA~~la~~Ga~V~i~~r~~~~l~~~~~~l~~~g--~~~~~~~Dvs~~~~v~~~~~~~~~~~g~ 81 (238)
T PRK05786 5 GKNVLIVGVSPG-LGYAVAYFALREGASVYAFARSEEKLKEIKKTLAKYG--NVIYVVGDVSKLEGAREAAEKAAKVFGA 81 (238)
T ss_pred CCEEEEECCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHCCC--CEEEEECCCCCHHHHHHHHHHHHHHHCC
T ss_conf 988999289878-9999999999879999999698899999999874359--7799975789999999999999998399
Q ss_pred CCEEEECCCCCCCHHHHHHHHHH---HHCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEC
Q ss_conf 46789627544504444422366---7249678999999878999999996089838999775
Q gi|254780634|r 300 FTTVLVDAPCSGTGTWRRRPDIK---WRLSQKNLIERTEEQKKILEESAQFVRPEGYLVYITC 359 (429)
Q Consensus 300 fd~vl~DaPCSg~G~~rr~Pe~~---w~~~~~~~~~~~~lQ~~iL~~a~~~lk~gG~lvYsTC 359 (429)
.|.++.-| |.+...|... |. +-+..-..-..-+...+.+++++||.+|-.+.
T Consensus 82 iD~lv~na-----G~~~~~~~~~~~~~~---~~~~~nl~~~~~~~~~~~~~m~~g~~ii~iss 136 (238)
T PRK05786 82 LHGLVVTA-----GGYIEDTVEELAGLE---DMLNNHLKAPLYAVNASLPLLREGSSIVLVSS 136 (238)
T ss_pred CCEEEEEC-----CCCCCCCHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEC
T ss_conf 88799805-----756788523189999---99999858999999999997421677999964
No 314
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=43.47 E-value=23 Score=15.45 Aligned_cols=130 Identities=17% Similarity=0.107 Sum_probs=58.6
Q ss_pred CCEEEECCCCCCHHHHHHHHHH-CCCCEEHHHHCCHHHHHHHHHHHHHCCCCCCEEEECCCCC--------CCCCCCCCE
Q ss_conf 6258601346882799999986-1688100552498999999999875028860882155434--------457232467
Q gi|254780634|r 232 SSQILDFCAGGGGKTLALSMLL-NNKGQIHAWDNNKSRMAPIVARIKRAGIHNVQLHSSWESL--------RNLQEHFTT 302 (429)
Q Consensus 232 g~~vLD~CAapGGKt~~la~~~-~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~~~~~--------~~~~~~fd~ 302 (429)
|..+|=.-++ +|==..+|..+ ...+.|+.+|.+..+++.+.+.++..|.. +.....|..- ......|.+
T Consensus 14 gK~alITGgs-~GIG~~ia~~la~~Ga~V~i~~r~~~~~~~~~~~l~~~g~~-~~~~~~Dv~~~~~v~~~~~~~~~~~g~ 91 (259)
T PRK06124 14 GQVALVTGSA-RGLGLEIARALAEAGAHVLVNGRNAARVEAAVAALRAAGGA-AEALVFDISDEEAVAAAFARIDAEHGR 91 (259)
T ss_pred CCEEEEECCC-CHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCC-EEEEEECCCCHHHHHHHHHHHHHHCCC
T ss_conf 9989992867-48999999999987999999969889999999999965995-899995179999999999999997599
Q ss_pred EEECCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHH----HHHHHHHHHHHCC--CCEEEEEEC--CCCHHHCH
Q ss_conf 89627544504444422366724967899999987----8999999996089--838999775--88824299
Q gi|254780634|r 303 VLVDAPCSGTGTWRRRPDIKWRLSQKNLIERTEEQ----KKILEESAQFVRP--EGYLVYITC--SILPEENI 367 (429)
Q Consensus 303 vl~DaPCSg~G~~rr~Pe~~w~~~~~~~~~~~~lQ----~~iL~~a~~~lk~--gG~lvYsTC--S~~~~Ene 367 (429)
|=+=+.|.|.. .+.|= ...++++.+....+. ..+...+++.++. +|.+|..+= +..+..+.
T Consensus 92 iDiLVnnAG~~--~~~~~--~~~~~e~~~~~~~~Nl~g~~~~~q~~~~~M~~~~~G~IInisS~~~~~~~~~~ 160 (259)
T PRK06124 92 LDILVNNVGAR--NRRPL--AELDDAEIRALLETDLVAPILLSRLAAQRMVRQGYGRIIAITSIAGEVARAGD 160 (259)
T ss_pred CCEEEECCCCC--CCCCH--HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCC
T ss_conf 97999898889--99990--66999999999999849999999999999877699369997233004679983
No 315
>cd05565 PTS_IIB_lactose PTS_IIB_lactose: subunit IIB of enzyme II (EII) of the lactose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS) found in Firmicutes as well as Actinobacteria. In this system, EII is a lactose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIC and IIB domains are expressed as a single protein from the lac operon. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include lactose, chitobiose/lichenan, ascorbate, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=43.41 E-value=23 Score=15.44 Aligned_cols=53 Identities=25% Similarity=0.410 Sum_probs=25.7
Q ss_pred CEEEECCCCCCHHHHHHHHHHCCCCEEHHHHCCHHHHHHHHHHHHHCCCCCCEEEECC-CCCCCCCCCCCEEEEC
Q ss_conf 2586013468827999999861688100552498999999999875028860882155-4344572324678962
Q gi|254780634|r 233 SQILDFCAGGGGKTLALSMLLNNKGQIHAWDNNKSRMAPIVARIKRAGIHNVQLHSSW-ESLRNLQEHFTTVLVD 306 (429)
Q Consensus 233 ~~vLD~CAapGGKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~~-~~~~~~~~~fd~vl~D 306 (429)
++||=+||| |+-|..++..|. +-++..|+. +++.... ......-+.||.||+-
T Consensus 1 ~kVLl~Ca~-GmSSs~la~~m~-------------------k~A~~~gi~-~~i~A~~~~~~~d~~~~yDvilLa 54 (99)
T cd05565 1 LNVLVLCAG-GGTSGLLANALN-------------------KGAKERGVP-LEAAAGAYGSHYDMIPDYDLVILA 54 (99)
T ss_pred CEEEEEECC-CCCHHHHHHHHH-------------------HHHHHCCCC-EEEEEEECHHHHHHHHCCCEEEEC
T ss_conf 909999079-885899999999-------------------999981997-699951034489887079999998
No 316
>PRK08643 acetoin reductase; Validated
Probab=43.29 E-value=23 Score=15.43 Aligned_cols=34 Identities=15% Similarity=0.245 Sum_probs=17.5
Q ss_pred HHHHHCCCC-EEHHHHCCHHHHHHHHHHHHHCCCC
Q ss_conf 999861688-1005524989999999998750288
Q gi|254780634|r 249 LSMLLNNKG-QIHAWDNNKSRMAPIVARIKRAGIH 282 (429)
Q Consensus 249 la~~~~~~g-~i~A~D~~~~Rl~~l~~~~~r~g~~ 282 (429)
++..+...| .|+.+|++..+++.+.+.++..|..
T Consensus 18 ia~~la~~Ga~V~i~d~~~~~~~~~~~~~~~~~~~ 52 (256)
T PRK08643 18 IAKRLVEDGFKVAIVDYNEETAKAAADKLSSDGGK 52 (256)
T ss_pred HHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCE
T ss_conf 99999987999999969889999999999853990
No 317
>PRK05632 phosphate acetyltransferase; Reviewed
Probab=42.72 E-value=20 Score=15.79 Aligned_cols=27 Identities=30% Similarity=0.564 Sum_probs=21.9
Q ss_pred HCCCCEEEEEECCCCHHHCHHHHHHHH
Q ss_conf 089838999775888242999899999
Q gi|254780634|r 348 VRPEGYLVYITCSILPEENIQQINYFL 374 (429)
Q Consensus 348 lk~gG~lvYsTCS~~~~Ene~vv~~fL 374 (429)
+.+.+.|+|+-|.+++.=|.++...+-
T Consensus 531 ~~~~~~l~~~Dc~vn~~P~aeqLa~IA 557 (702)
T PRK05632 531 LLPDQVLVYGDCAINPDPTAEQLAEIA 557 (702)
T ss_pred EECCCEEEEEECCCCCCCCHHHHHHHH
T ss_conf 957943899603025897999999999
No 318
>TIGR00959 ffh signal recognition particle protein; InterPro: IPR004780 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes , . SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor . In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. This entry represents various SRP subunits.; GO: 0008312 7S RNA binding, 0006614 SRP-dependent cotranslational protein targeting to membrane, 0048500 signal recognition particle.
Probab=42.27 E-value=24 Score=15.33 Aligned_cols=178 Identities=17% Similarity=0.263 Sum_probs=95.2
Q ss_pred HHHHHHHHCCHHHH--HHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCHH
Q ss_conf 99999985744899--9999862898611124778899899999898718875454754311345665444610110963
Q gi|254780634|r 130 LQSSFQSYFKDTWL--KEAKSLSMRAPLDLRTNTLKVNRCKLFKNLCHYGVHHSSISRFGLRIPATKGKSRLPNVMNDIT 207 (429)
Q Consensus 130 L~~~~~~~~ge~~~--~~l~a~~~~~pl~iRvN~~k~~~~~~~~~L~~~gi~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 207 (429)
.++.+.+.--+++. +++.+++ |.-..| |+=.|++.+.|.+.+-+..+ +.+.. +.|
T Consensus 46 VvK~Fi~~V~ekA~G~eV~~~~~-P~Qq~i-----KIV~eEL~~~LG~~~~E~~~-----L~~~~-----~~P------- 102 (439)
T TIGR00959 46 VVKDFIKKVKEKALGQEVLKSLS-PGQQFI-----KIVHEELVAILGGKGRESAE-----LKLAE-----KRP------- 102 (439)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCC-CCHHEE-----HHHHHHHHHHCCCCCCCCCC-----CCCCC-----CCC-------
T ss_conf 99999998888752254412678-020120-----22468999851666732567-----55567-----868-------
Q ss_pred HCCCEEEEECCCCCCCCCCCCCCCCCEEEECCCCCCHHHHHH---HHH--H---CCCCEEHHHHCCHH-HHHHHHHHHHH
Q ss_conf 126548984155654211236666625860134688279999---998--6---16881005524989-99999999875
Q gi|254780634|r 208 FQRGWFEIQDEGSQIVSNLTAITNSSQILDFCAGGGGKTLAL---SML--L---NNKGQIHAWDNNKS-RMAPIVARIKR 278 (429)
Q Consensus 208 f~~G~~~VQD~aSql~~~~l~~~~g~~vLD~CAapGGKt~~l---a~~--~---~~~g~i~A~D~~~~-Rl~~l~~~~~r 278 (429)
.++.+++.|. +||||.. |.+ . +-+--++|+|++.- =+..|+.-.++
T Consensus 103 --------------~vilmvGLQG-----------sGKTTt~gKLA~~ll~kk~~~kvLLva~D~yRPAA~~QL~~Lg~Q 157 (439)
T TIGR00959 103 --------------TVILMVGLQG-----------SGKTTTAGKLALYLLKKKEGKKVLLVACDLYRPAAIEQLKVLGEQ 157 (439)
T ss_pred --------------EEEEEECCCC-----------CCHHHHHHHHHHHHHHHHCCCCEEEEEHHCCCHHHHHHHHHHHHH
T ss_conf --------------3899731378-----------857889999999999986389703403210347899999997675
Q ss_pred CCCCCCE-EEECCC---CCC--------CCCCCCCEEEECCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 0288608-821554---344--------5723246789627544504444422366724967899999987899999999
Q gi|254780634|r 279 AGIHNVQ-LHSSWE---SLR--------NLQEHFTTVLVDAPCSGTGTWRRRPDIKWRLSQKNLIERTEEQKKILEESAQ 346 (429)
Q Consensus 279 ~g~~~v~-~~~~~~---~~~--------~~~~~fd~vl~DaPCSg~G~~rr~Pe~~w~~~~~~~~~~~~lQ~~iL~~a~~ 346 (429)
.|+.... ...... ... .-...||.|||| -=| |.+..++=..||..+ -+
T Consensus 158 ~gVpvf~h~~~~~~p~~Pv~ia~~Al~~Ak~~~~D~vI~D----TAG--------RL~ID~~LM~EL~~i--------K~ 217 (439)
T TIGR00959 158 VGVPVFAHLGKGQSPDDPVEIARQALEEAKENGFDVVIVD----TAG--------RLQIDEELMEELAEI--------KE 217 (439)
T ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEE----CCC--------CHHHHHHHHHHHHHH--------HH
T ss_conf 2887110047888988778999999999997489789972----675--------125559999999999--------88
Q ss_pred HHCCCCEEEEEECCCCHHHCHHHHHHHHHH
Q ss_conf 608983899977588824299989999985
Q gi|254780634|r 347 FVRPEGYLVYITCSILPEENIQQINYFLSK 376 (429)
Q Consensus 347 ~lk~gG~lvYsTCS~~~~Ene~vv~~fL~~ 376 (429)
.+.|. .++|..=++.=.|=-.+.+.|=++
T Consensus 218 ~~nP~-EiLlVvDaM~GQdAvn~A~~F~e~ 246 (439)
T TIGR00959 218 ILNPD-EILLVVDAMTGQDAVNTAKTFNER 246 (439)
T ss_pred HHCCC-EEEECCHHCCHHHHHHHHHHHCCC
T ss_conf 86887-054122010216999999863660
No 319
>TIGR02699 archaeo_AfpA archaeoflavoprotein AfpA; InterPro: IPR014072 The prototypical member of this archaeal protein family is AF1518 from Archaeoglobus fulgidus. This homodimer with two non-covalently bound FMN cofactors can receive electrons from ferredoxin, but not from a number of other electron donors such as NADH or rubredoxin. It can then donate electrons to various reductases..
Probab=42.22 E-value=18 Score=16.15 Aligned_cols=10 Identities=50% Similarity=0.481 Sum_probs=4.9
Q ss_pred CCCCHHHHHH
Q ss_conf 4688279999
Q gi|254780634|r 240 AGGGGKTLAL 249 (429)
Q Consensus 240 AapGGKt~~l 249 (429)
+.|+||.+.|
T Consensus 135 ~lP~gk~L~L 144 (176)
T TIGR02699 135 ALPDGKKLEL 144 (176)
T ss_pred ECCCCCEEEE
T ss_conf 5698961689
No 320
>PRK11773 uvrD DNA-dependent helicase II; Provisional
Probab=42.06 E-value=24 Score=15.31 Aligned_cols=13 Identities=23% Similarity=0.186 Sum_probs=6.8
Q ss_pred HHHHHHHHHCCCC
Q ss_conf 9999989871887
Q gi|254780634|r 167 CKLFKNLCHYGVH 179 (429)
Q Consensus 167 ~~~~~~L~~~gi~ 179 (429)
..+.+.|...||.
T Consensus 361 ~~le~aL~~~gIP 373 (722)
T PRK11773 361 RVLEEALLQAGIP 373 (722)
T ss_pred HHHHHHHHHCCCC
T ss_conf 7899999865998
No 321
>PRK11727 putative SAM-dependent methyltransferase; Provisional
Probab=41.79 E-value=24 Score=15.28 Aligned_cols=151 Identities=17% Similarity=0.202 Sum_probs=94.8
Q ss_pred CCCCCEEEECCCCCCHHHHHHHHHHCCCCEEHHHHCCHHHHHHHHHHHHHC-CCC-CCEEEE--CCCC----CCCCCCCC
Q ss_conf 666625860134688279999998616881005524989999999998750-288-608821--5543----44572324
Q gi|254780634|r 229 ITNSSQILDFCAGGGGKTLALSMLLNNKGQIHAWDNNKSRMAPIVARIKRA-GIH-NVQLHS--SWES----LRNLQEHF 300 (429)
Q Consensus 229 ~~~g~~vLD~CAapGGKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~-g~~-~v~~~~--~~~~----~~~~~~~f 300 (429)
....-++||...|.-.==-.|+..+.+ =..+|.|+++.=++..+.++++- ++. .|++.. .... .-...+.|
T Consensus 115 ~g~~v~gLDIGtGAncIYPLLG~~~yg-W~fvgtDId~~sl~~A~~~v~~N~~L~~~I~lr~q~~~~~If~gii~~~e~f 193 (326)
T PRK11727 115 KGANVRVLDIGVGANCIYPIIGVQEYG-WRFVGSDIDPQALASAQAIISANPGLNGAIRLRLQKDSKAIFKGIIHKNERF 193 (326)
T ss_pred CCCCCEEEECCCCCCEEEEECCCEECC-CEEEEECCCHHHHHHHHHHHHHCCCCCCCEEEEECCCHHHHHCCCCCCCCEE
T ss_conf 888723675056743112101430017-6379961798999999999984820105279996278676532458876657
Q ss_pred CEEEECCCCCCC------HHHHHHHHHHHHC---C-H--------H----HHHHHHHHHHHHHHHHHHHHCCCCEEEEEE
Q ss_conf 678962754450------4444422366724---9-6--------7----899999987899999999608983899977
Q gi|254780634|r 301 TTVLVDAPCSGT------GTWRRRPDIKWRL---S-Q--------K----NLIERTEEQKKILEESAQFVRPEGYLVYIT 358 (429)
Q Consensus 301 d~vl~DaPCSg~------G~~rr~Pe~~w~~---~-~--------~----~~~~~~~lQ~~iL~~a~~~lk~gG~lvYsT 358 (429)
|..+|-.|==.+ |+.|+--...-.. + + . .--|..-++ .|+.++..+-+ .+..=|
T Consensus 194 dftmCNPPF~~S~eea~~gt~Rk~~nl~~~~~~~~~~~lnfgG~~~EL~c~GGE~~FI~-rMI~ES~~~~~---~v~WfT 269 (326)
T PRK11727 194 DLTLCNPPFHASAAEARAGSERKLRNLGKNKPKAAKPVLNFGGQNAELWCEGGEVAFIK-KMIEESVAFAK---QVLWFT 269 (326)
T ss_pred EEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEECCCHHHHHH-HHHHHHHHHHC---CCEEEE
T ss_conf 77851898767899997420454432033678888764245776424784683899999-99999998730---748983
Q ss_pred CCCCHHHCHHHHHHHHHHCCC--CEEEE
Q ss_conf 588824299989999985799--79941
Q gi|254780634|r 359 CSILPEENIQQINYFLSKNPH--FSIDS 384 (429)
Q Consensus 359 CS~~~~Ene~vv~~fL~~~~~--~~~~~ 384 (429)
|=+-+.+|-.-+...|++..- +...+
T Consensus 270 slvgKksnL~~l~~~L~~~~~~~~~~~e 297 (326)
T PRK11727 270 SLVSKKENLPPLYRALKKVGAVEVKTIE 297 (326)
T ss_pred ECCCCCCCHHHHHHHHHHCCCCEEEEEE
T ss_conf 0135620399999999976997799998
No 322
>pfam05724 TPMT Thiopurine S-methyltransferase (TPMT). This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulfhydryl compounds, including anticancer and immunosuppressive thiopurines.
Probab=41.74 E-value=24 Score=15.27 Aligned_cols=136 Identities=10% Similarity=0.117 Sum_probs=74.2
Q ss_pred CCCCCCCCEEEECCCCCCHHHHHHHHHHCCCCEEHHHHCCHHHHHHHHHHH------------HHCCCCCCEEEECCCCC
Q ss_conf 236666625860134688279999998616881005524989999999998------------75028860882155434
Q gi|254780634|r 226 LTAITNSSQILDFCAGGGGKTLALSMLLNNKGQIHAWDNNKSRMAPIVARI------------KRAGIHNVQLHSSWESL 293 (429)
Q Consensus 226 ~l~~~~g~~vLD~CAapGGKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~------------~r~g~~~v~~~~~~~~~ 293 (429)
.++..+|.+||=--| |||.-|..+....-.|+++|+++.=++...+.. .+....++.+...|...
T Consensus 17 ~l~~~~~~rvlVPlC---Gks~D~~wLa~~G~~VvGvels~~Av~~ff~e~~~~~~~~~~~~~~~~~~~~i~i~~gD~F~ 93 (203)
T pfam05724 17 ALNLPPGLRVLVPLC---GKALDMVWLAEQGHFVVGVEISELAVEKFFAEANLSPPITELSGFKEYRAGGIELLCGDFFT 93 (203)
T ss_pred HCCCCCCCEEEEECC---CCHHHHHHHHHCCCEEEEEECCHHHHHHHHHHCCCCCCCEECCCCEEECCCCEEEEECCHHC
T ss_conf 638999988999689---98599999983898489995679999999997378875101366213205864899773213
Q ss_pred C--CCCCCCCEEEECCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHC-----
Q ss_conf 4--572324678962754450444442236672496789999998789999999960898389997758882429-----
Q gi|254780634|r 294 R--NLQEHFTTVLVDAPCSGTGTWRRRPDIKWRLSQKNLIERTEEQKKILEESAQFVRPEGYLVYITCSILPEEN----- 366 (429)
Q Consensus 294 ~--~~~~~fd~vl~DaPCSg~G~~rr~Pe~~w~~~~~~~~~~~~lQ~~iL~~a~~~lk~gG~lvYsTCS~~~~En----- 366 (429)
. ...++||.|.== ... ..=+|+.| .+-..+..++|+|||.++-.|--..+.+.
T Consensus 94 l~~~~~g~fD~IyDr---aal--~ALpp~~R---------------~~Ya~~l~~lL~pgg~~lLitl~y~~~~~~GPPf 153 (203)
T pfam05724 94 LPREELGKFDLIYDR---AAL--CALPPEMR---------------PRYAKQMYELLPPGGEGLLITLDYPQTDHEGPPF 153 (203)
T ss_pred CCHHHCCCCCEEEEE---CCE--EECCHHHH---------------HHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCC
T ss_conf 784346873489970---323--53898999---------------9999999997189966999999738655799489
Q ss_pred ---HHHHHHHHHHCCCCEEEECC
Q ss_conf ---99899999857997994143
Q gi|254780634|r 367 ---IQQINYFLSKNPHFSIDSII 386 (429)
Q Consensus 367 ---e~vv~~fL~~~~~~~~~~~~ 386 (429)
++-|+.... ++|.+..+.
T Consensus 154 sv~~~Ev~~lf~--~~f~i~~L~ 174 (203)
T pfam05724 154 SVPAAELEALFG--GGWKVARLE 174 (203)
T ss_pred CCCHHHHHHHHC--CCCEEEEEE
T ss_conf 899999998708--985699965
No 323
>PRK02290 3-dehydroquinate synthase; Provisional
Probab=40.64 E-value=15 Score=16.68 Aligned_cols=59 Identities=20% Similarity=0.206 Sum_probs=39.6
Q ss_pred HHCCCEEEEECCCCCCCCCCCCC---CCCCEEEECCCCCCHHHHHHHHHHCCCCEEHHHHCCHH
Q ss_conf 31265489841556542112366---66625860134688279999998616881005524989
Q gi|254780634|r 207 TFQRGWFEIQDEGSQIVSNLTAI---TNSSQILDFCAGGGGKTLALSMLLNNKGQIHAWDNNKS 267 (429)
Q Consensus 207 ~f~~G~~~VQD~aSql~~~~l~~---~~g~~vLD~CAapGGKt~~la~~~~~~g~i~A~D~~~~ 267 (429)
.|..|+|.|.-+.-..+--...| ..| .|=-++-.|||||.+|+++-.+ ..|.++|.+.+
T Consensus 205 S~s~~~fLVhsEt~~s~yv~~RPFRVNAG-avHaYv~~p~g~T~YLSEL~sG-~~Vl~v~~~G~ 266 (347)
T PRK02290 205 SSSRGMFLVHSETEENPYVAPRPFRVNAG-AVHAYVRVPGGKTRYLSELKAG-DEVLIVDADGR 266 (347)
T ss_pred ECCCEEEEEEECCCCCCCCCCCCCEECCC-CHHEEEECCCCCEEEHHHCCCC-CEEEEEECCCC
T ss_conf 03661799971545689888877213276-2116897489826201340489-87999979998
No 324
>TIGR01768 GGGP-family geranylgeranylglyceryl phosphate synthase family protein; InterPro: IPR008205 This family contains prokaryotic proteins that are related to pcrB. Staphylococcus aureus chromosomal gene pcrA encodes a protein with significant similarity (40 0dentity) to two Escherichia coli helicases: the helicase II encoded by the uvrD gene and the Rep helicase. PcrB gene seems to belong to an operon containing at least one other gene, pcrBA, downstream from pcrB . The PcrB proteins often contain an FMN binding site although the function of these proteins is still unknown..
Probab=40.44 E-value=25 Score=15.14 Aligned_cols=120 Identities=13% Similarity=0.151 Sum_probs=84.8
Q ss_pred HHHCCHHHHHHHHHHHH-HCCCCCCEEEECCCCCCCCCCCCCEEEECC-CCCCCHHHHHHHHHHH-HCCHHHHHHHHHHH
Q ss_conf 55249899999999987-502886088215543445723246789627-5445044444223667-24967899999987
Q gi|254780634|r 261 AWDNNKSRMAPIVARIK-RAGIHNVQLHSSWESLRNLQEHFTTVLVDA-PCSGTGTWRRRPDIKW-RLSQKNLIERTEEQ 337 (429)
Q Consensus 261 A~D~~~~Rl~~l~~~~~-r~g~~~v~~~~~~~~~~~~~~~fd~vl~Da-PCSg~G~~rr~Pe~~w-~~~~~~~~~~~~lQ 337 (429)
+.-++..++..+.++++ |.++..|-...+ . ......||.+|+=- ==|+.+-|=---+..| |..-..+..+.++|
T Consensus 36 s~gVt~~~~~~~~~~~~e~~~~P~ilfPsn-~--~~~s~~~Da~f~~svlNS~~~~wI~GkhaqWvr~q~~~~~~~~~~~ 112 (242)
T TIGR01768 36 SQGVTLDKLDQLIEALRERYGVPIILFPSN-L--TNVSRKADALFFPSVLNSDDPYWIIGKHAQWVRAQILAAPKFKKLG 112 (242)
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCEEEECCC-C--CCHHHCCCEEEEEEEEECCCCCEEECCHHHHHHHHHHHHHHHHHHH
T ss_conf 787036889999999974059837984188-7--4211106768771143169976453425999999998789887653
Q ss_pred --HHHHHHHHHHHCCCCEEEEEECCCCH-HHCHHHHHHHH--HHCCCCEEE
Q ss_conf --89999999960898389997758882-42999899999--857997994
Q gi|254780634|r 338 --KKILEESAQFVRPEGYLVYITCSILP-EENIQQINYFL--SKNPHFSID 383 (429)
Q Consensus 338 --~~iL~~a~~~lk~gG~lvYsTCS~~~-~Ene~vv~~fL--~~~~~~~~~ 383 (429)
.+++-.+.=.|-|||..-..|-+-.- -+||+++.+.. ++.=++++.
T Consensus 113 ~~~E~~~~gY~iv~pgg~aa~v~~A~~~P~~k~~~Aa~~~~a~~~~g~~~~ 163 (242)
T TIGR01768 113 ESLEIIPEGYIIVNPGGAAATVTKAKPIPYDKEDLAAYAALAEEMLGMPII 163 (242)
T ss_pred HHHEEHHEEEEEECCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCEE
T ss_conf 134001211278758995588502357887768799999999998099689
No 325
>TIGR01969 minD_arch cell division ATPase MinD; InterPro: IPR010224 Proper placement of the bacterial cell division site requires the site-specific inactivation of other potential division sites. In Escherichia coli, selection of the correct mid-cell site is mediated by the MinC, MinD and MinE proteins. Several members of this family are found in archaeal genomes but their function is uncharacterised. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. This entry represents the archaeal MinD family. The exact roles of the various archaeal MinD homologs are unknown. .
Probab=40.40 E-value=7 Score=18.93 Aligned_cols=13 Identities=31% Similarity=0.537 Sum_probs=8.8
Q ss_pred CCCCCEEEECCCC
Q ss_conf 2324678962754
Q gi|254780634|r 297 QEHFTTVLVDAPC 309 (429)
Q Consensus 297 ~~~fd~vl~DaPC 309 (429)
.+.||.+|+|||=
T Consensus 107 ~~~~D~lLIDAPA 119 (258)
T TIGR01969 107 IDDTDFLLIDAPA 119 (258)
T ss_pred HCCCCEEEEECCC
T ss_conf 2043778874789
No 326
>TIGR00452 TIGR00452 methyltransferase, putative; InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order . Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI ), shared by other AdoMet-Mtases , is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments , although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases , , , . The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences . This is a set of proteobacterial proteins, which have homology in their central region to a large number of methyltransferases active on a variety of substrates. .
Probab=40.13 E-value=25 Score=15.11 Aligned_cols=122 Identities=21% Similarity=0.159 Sum_probs=75.5
Q ss_pred CCCCCCCCCCCEEEECCCCCCHHHHHHHHHHCCCCEEHHHHCCHHHHHHHHHHHHHCCCCC---CEEEE-CCCCCCCCC-
Q ss_conf 2112366666258601346882799999986168810055249899999999987502886---08821-554344572-
Q gi|254780634|r 223 VSNLTAITNSSQILDFCAGGGGKTLALSMLLNNKGQIHAWDNNKSRMAPIVARIKRAGIHN---VQLHS-SWESLRNLQ- 297 (429)
Q Consensus 223 ~~~~l~~~~g~~vLD~CAapGGKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~---v~~~~-~~~~~~~~~- 297 (429)
++.-+.|-.|..|+|+.|+.|=--.-| =+.|.-.++=+++..|-..+-.+.|-=+.| +.... +-..+....
T Consensus 113 ~l~~~~pL~~~~i~DVGC~~GY~~~~M----~~~Gak~~VG~DP~~L~~~QFE~~~~ll~~~~~~~l~~LGiE~l~~~~p 188 (316)
T TIGR00452 113 VLPHLSPLKGRTILDVGCGSGYHLWRM----LGEGAKLLVGIDPTELFLCQFEAVRKLLDNDKRAILLPLGIEQLQELKP 188 (316)
T ss_pred HCCCCCCCCCCEEEEECCCCHHHHHHH----HHCCCCEEEECCHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHCCC
T ss_conf 312466545777898336870688977----6207827874365789999999999872423557540367022232076
Q ss_pred CCCCEEEECCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHCHHHH
Q ss_conf 3246789627544504444422366724967899999987899999999608983899977588824299989
Q gi|254780634|r 298 EHFTTVLVDAPCSGTGTWRRRPDIKWRLSQKNLIERTEEQKKILEESAQFVRPEGYLVYITCSILPEENIQQI 370 (429)
Q Consensus 298 ~~fd~vl~DaPCSg~G~~rr~Pe~~w~~~~~~~~~~~~lQ~~iL~~a~~~lk~gG~lvYsTCS~~~~Ene~vv 370 (429)
..||.|++ +|++- .|++| ++.|..|. ..|+.+|.||--|--|.-.+|...|
T Consensus 189 nAFD~vFs------~GVLY------HRkSP--Le~L~~L~--------~~L~~~GELVL~TLviD~d~~~~Lv 239 (316)
T TIGR00452 189 NAFDTVFS------LGVLY------HRKSP--LEHLKQLK--------DQLVKKGELVLETLVIDGDLNTVLV 239 (316)
T ss_pred CCCEEEEE------CCHHH------CCCCC--HHHHHHHH--------HHHHHCCCEEEEEEEECCCCCEEEC
T ss_conf 41203122------02021------15570--89999999--------9987579358653466077675864
No 327
>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell. The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.
Probab=39.98 E-value=15 Score=16.70 Aligned_cols=17 Identities=18% Similarity=0.124 Sum_probs=11.1
Q ss_pred CCEEEECCCCCCCHHHHH
Q ss_conf 467896275445044444
Q gi|254780634|r 300 FTTVLVDAPCSGTGTWRR 317 (429)
Q Consensus 300 fd~vl~DaPCSg~G~~rr 317 (429)
-|.|++|.|-+ ++-.-+
T Consensus 63 gD~viiD~ppg-~~~~~~ 79 (179)
T cd02036 63 GDYILIDSPAG-IERGFI 79 (179)
T ss_pred CCEEEEECCCC-CCHHHH
T ss_conf 99999979999-888999
No 328
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=39.85 E-value=26 Score=15.08 Aligned_cols=16 Identities=13% Similarity=0.137 Sum_probs=8.2
Q ss_pred CCCCCEEEECCCCCCHHHH
Q ss_conf 6666258601346882799
Q gi|254780634|r 229 ITNSSQILDFCAGGGGKTL 247 (429)
Q Consensus 229 ~~~g~~vLD~CAapGGKt~ 247 (429)
.+.|+.|+ -.|.|++.
T Consensus 253 i~~Gd~v~---i~Ps~~~~ 268 (426)
T PRK12317 253 LKVGDKVV---FMPAGKVG 268 (426)
T ss_pred CCCCCEEE---EECCCCCE
T ss_conf 43799999---96799865
No 329
>KOG1197 consensus
Probab=39.78 E-value=26 Score=15.07 Aligned_cols=129 Identities=19% Similarity=0.186 Sum_probs=66.1
Q ss_pred CCCCCCCCEEEECCCCCCHHHHHHHHHHCCCC-EEHHHHCCHHHHHHHHHHHHHCCCCCCEEEECC-------CC-CCCC
Q ss_conf 23666662586013468827999999861688-100552498999999999875028860882155-------43-4457
Q gi|254780634|r 226 LTAITNSSQILDFCAGGGGKTLALSMLLNNKG-QIHAWDNNKSRMAPIVARIKRAGIHNVQLHSSW-------ES-LRNL 296 (429)
Q Consensus 226 ~l~~~~g~~vLD~CAapGGKt~~la~~~~~~g-~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~~-------~~-~~~~ 296 (429)
.-.++||+.||=- ||.||=-+.+-++....| .+++.-....+.+.+++|-...- |.....| .+ -+..
T Consensus 141 ~y~vkpGhtVlvh-aAAGGVGlll~Ql~ra~~a~tI~~asTaeK~~~akenG~~h~---I~y~~eD~v~~V~kiTngKGV 216 (336)
T KOG1197 141 AYNVKPGHTVLVH-AAAGGVGLLLCQLLRAVGAHTIATASTAEKHEIAKENGAEHP---IDYSTEDYVDEVKKITNGKGV 216 (336)
T ss_pred HCCCCCCCEEEEE-ECCCCHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCCCE---EECCCHHHHHHHHHCCCCCCC
T ss_conf 6588999789998-315628799999997528679997253788999986487430---004505699999841488771
Q ss_pred CCCCCEEEECCCCCCCHHHHHH------------HH-HHHH-CCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCC
Q ss_conf 2324678962754450444442------------23-6672-49678999999878999999996089838999775888
Q gi|254780634|r 297 QEHFTTVLVDAPCSGTGTWRRR------------PD-IKWR-LSQKNLIERTEEQKKILEESAQFVRPEGYLVYITCSIL 362 (429)
Q Consensus 297 ~~~fd~vl~DaPCSg~G~~rr~------------Pe-~~w~-~~~~~~~~~~~lQ~~iL~~a~~~lk~gG~lvYsTCS~~ 362 (429)
...||-|=-|-=-+++-.+++. ++ ++|. ++|.. .++++| -.+=|.+ .
T Consensus 217 d~vyDsvG~dt~~~sl~~Lk~~G~mVSfG~asgl~~p~~l~~ls~k~---------------l~lvrp-sl~gYi~---g 277 (336)
T KOG1197 217 DAVYDSVGKDTFAKSLAALKPMGKMVSFGNASGLIDPIPLNQLSPKA---------------LQLVRP-SLLGYID---G 277 (336)
T ss_pred EEEECCCCCHHHHHHHHHHCCCCEEEEECCCCCCCCCEEHHHCCHHH---------------HHHCCH-HHHCCCC---C
T ss_conf 05632656414677899753486699823556898971155508356---------------432157-6615347---7
Q ss_pred HHHCHHHHHHHHHHC
Q ss_conf 242999899999857
Q gi|254780634|r 363 PEENIQQINYFLSKN 377 (429)
Q Consensus 363 ~~Ene~vv~~fL~~~ 377 (429)
++|=+..+.+|++..
T Consensus 278 ~~el~~~v~rl~alv 292 (336)
T KOG1197 278 EVELVSYVARLFALV 292 (336)
T ss_pred HHHHHHHHHHHHHHH
T ss_conf 799999999999986
No 330
>PRK13557 histidine kinase; Provisional
Probab=39.53 E-value=20 Score=15.80 Aligned_cols=53 Identities=13% Similarity=0.097 Sum_probs=37.5
Q ss_pred CCEEHHHHCCHHHHHHHHHHHHHCCCCCCEEEECCCCCCCC-C-CCCCEEEECCC
Q ss_conf 88100552498999999999875028860882155434457-2-32467896275
Q gi|254780634|r 256 KGQIHAWDNNKSRMAPIVARIKRAGIHNVQLHSSWESLRNL-Q-EHFTTVLVDAP 308 (429)
Q Consensus 256 ~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~~~~~~~~-~-~~fd~vl~DaP 308 (429)
..+|..+|-++.-...+..-++++|+......+....+..+ . ..||.||.|.=
T Consensus 413 ~~~ILvVDD~~~~r~~~~~~L~~~G~~v~~a~~G~eAl~~l~~~~~~Dlvl~D~~ 467 (538)
T PRK13557 413 TETILIVDDRPDVAELARMILEDFGYRTLVASNGREALEILESHPEVDLLFTDLI 467 (538)
T ss_pred CCEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCCEEEECCC
T ss_conf 7258996798999999999999769999998999999999960999889988777
No 331
>pfam11899 DUF3419 Protein of unknown function (DUF3419). This family of proteins are functionally uncharacterized. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=39.07 E-value=26 Score=15.00 Aligned_cols=65 Identities=20% Similarity=0.366 Sum_probs=38.3
Q ss_pred CCCCCEEEECCC--CCCC-CCCCCCE-EEECCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEE
Q ss_conf 288608821554--3445-7232467-89627544504444422366724967899999987899999999608983899
Q gi|254780634|r 280 GIHNVQLHSSWE--SLRN-LQEHFTT-VLVDAPCSGTGTWRRRPDIKWRLSQKNLIERTEEQKKILEESAQFVRPEGYLV 355 (429)
Q Consensus 280 g~~~v~~~~~~~--~~~~-~~~~fd~-vl~DaPCSg~G~~rr~Pe~~w~~~~~~~~~~~~lQ~~iL~~a~~~lk~gG~lv 355 (429)
++..++++++.. .+.. ..+++|+ ||+|+ .-| ++|+. ..++.....+.++|||+++
T Consensus 270 ~~dri~~ht~sl~e~L~~~~~~s~d~~vLlD~-------------~DW-m~~~~-------~~~~~~~i~r~a~pgaRVl 328 (376)
T pfam11899 270 GADRVRIHTDSLTEVLARLPAGSLTRAVLLDA-------------MDW-MDPEQ-------LNALWREITRTAAPGARVL 328 (376)
T ss_pred CCCCEEEEECCHHHHHHHCCCCCEEEEEECCH-------------HHC-CCHHH-------HHHHHHHHHHHHCCCCEEE
T ss_conf 88825998275999997389987338997025-------------534-99999-------9999999999748996899
Q ss_pred EEECCCCHHH
Q ss_conf 9775888242
Q gi|254780634|r 356 YITCSILPEE 365 (429)
Q Consensus 356 YsTCS~~~~E 365 (429)
|=|-+..+..
T Consensus 329 ~Rsa~~~~~~ 338 (376)
T pfam11899 329 FRSAAEPPWY 338 (376)
T ss_pred EECCCCCCCC
T ss_conf 8338999765
No 332
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=39.04 E-value=26 Score=15.00 Aligned_cols=23 Identities=9% Similarity=0.206 Sum_probs=8.7
Q ss_pred EEEEECCCCHHHCHHHHHHHHHH
Q ss_conf 99977588824299989999985
Q gi|254780634|r 354 LVYITCSILPEENIQQINYFLSK 376 (429)
Q Consensus 354 lvYsTCS~~~~Ene~vv~~fL~~ 376 (429)
.++..=+..=.+--+|++.|-+.
T Consensus 211 ~llV~Da~~GQ~a~~~a~~F~~~ 233 (433)
T PRK00771 211 VILVIDATIGQQASEQAKAFKEA 233 (433)
T ss_pred EEEEEECCCCHHHHHHHHHHHHH
T ss_conf 89986544226789999999875
No 333
>PRK10693 response regulator of RpoS; Provisional
Probab=38.26 E-value=20 Score=15.76 Aligned_cols=15 Identities=7% Similarity=0.259 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHCCC
Q ss_conf 999999999875028
Q gi|254780634|r 267 SRMAPIVARIKRAGI 281 (429)
Q Consensus 267 ~Rl~~l~~~~~r~g~ 281 (429)
.-++.+...+...+.
T Consensus 243 ~vl~~lN~~~~~~~~ 257 (337)
T PRK10693 243 ALLKQVNHLLRQANL 257 (337)
T ss_pred HHHHHHHHHHHHCCC
T ss_conf 999999999763378
No 334
>PRK04333 50S ribosomal protein L14e; Validated
Probab=38.06 E-value=11 Score=17.55 Aligned_cols=23 Identities=43% Similarity=0.479 Sum_probs=17.9
Q ss_pred CCEEEECCCCCCCHHHHHHHHHHH
Q ss_conf 467896275445044444223667
Q gi|254780634|r 300 FTTVLVDAPCSGTGTWRRRPDIKW 323 (429)
Q Consensus 300 fd~vl~DaPCSg~G~~rr~Pe~~w 323 (429)
-.+||+|-|.+ +|+.|+.--++|
T Consensus 30 ~nrvLVdGP~~-tgV~R~~~n~k~ 52 (83)
T PRK04333 30 KNFVLVTGPGL-NGVKRRRCNIKH 52 (83)
T ss_pred CCEEEEECCCC-CCCEEEEEECCC
T ss_conf 88799889977-895006760220
No 335
>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=36.52 E-value=29 Score=14.74 Aligned_cols=43 Identities=16% Similarity=0.109 Sum_probs=15.9
Q ss_pred CCCCHHHHHHHHHHCCCCEEHHHHCCHHHHHHHHHHHHHCCCCCCEE
Q ss_conf 46882799999986168810055249899999999987502886088
Q gi|254780634|r 240 AGGGGKTLALSMLLNNKGQIHAWDNNKSRMAPIVARIKRAGIHNVQL 286 (429)
Q Consensus 240 AapGGKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~ 286 (429)
-.+-.||.-+.-+|.|. =-|++-.=.+.|.--+.++|+...++
T Consensus 204 ~vts~~tAEm~Kl~EN~----fRdVNIALaNElali~~~~GIdvwev 246 (436)
T COG0677 204 PVTSARTAEMVKLTENT----FRDVNIALANELALICNAMGIDVWEV 246 (436)
T ss_pred ECCCHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHCCCHHHH
T ss_conf 75774799999988633----46778999999999999829869999
No 336
>PRK12569 hypothetical protein; Provisional
Probab=36.43 E-value=29 Score=14.73 Aligned_cols=16 Identities=25% Similarity=0.225 Sum_probs=5.3
Q ss_pred HHHHHHHHHHHHHHHH
Q ss_conf 7899999987899999
Q gi|254780634|r 328 KNLIERTEEQKKILEE 343 (429)
Q Consensus 328 ~~~~~~~~lQ~~iL~~ 343 (429)
+++.....-|...|..
T Consensus 85 ~el~~~v~~Qi~al~~ 100 (245)
T PRK12569 85 QELVNDILYQLGALRE 100 (245)
T ss_pred HHHHHHHHHHHHHHHH
T ss_conf 9999999999999999
No 337
>PRK08277 D-mannonate oxidoreductase; Provisional
Probab=36.08 E-value=29 Score=14.69 Aligned_cols=49 Identities=22% Similarity=0.304 Sum_probs=21.4
Q ss_pred CCEEEECCCCCC-HHHHHHHHHHCCCCEEHHHHCCHHHHHHHHHHHHHCCC
Q ss_conf 625860134688-27999999861688100552498999999999875028
Q gi|254780634|r 232 SSQILDFCAGGG-GKTLALSMLLNNKGQIHAWDNNKSRMAPIVARIKRAGI 281 (429)
Q Consensus 232 g~~vLD~CAapG-GKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~ 281 (429)
|..+|=.-|+.| |+.+..+ +......|+.+|++..+++.+.+.++..|.
T Consensus 10 gKvalVTGas~GIG~aia~~-la~~Ga~V~i~~~~~~~~~~~~~~l~~~g~ 59 (278)
T PRK08277 10 GKVAVITGGGGVLGGAMAKE-LARAGAKVAILDRNQEKAEAVVEEIKANGG 59 (278)
T ss_pred CCEEEEECCCCHHHHHHHHH-HHHCCCEEEEEECCHHHHHHHHHHHHHCCC
T ss_conf 99899958674899999999-998799899997988999999999984599
No 338
>pfam06859 Bin3 Bicoid-interacting protein 3 (Bin3). This family represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3). Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation. Note that family members contain a conserved HLN motif.
Probab=35.81 E-value=29 Score=14.66 Aligned_cols=18 Identities=22% Similarity=0.599 Sum_probs=11.7
Q ss_pred HHHHHHHHHHCCCCEEEE
Q ss_conf 999999996089838999
Q gi|254780634|r 339 KILEESAQFVRPEGYLVY 356 (429)
Q Consensus 339 ~iL~~a~~~lk~gG~lvY 356 (429)
.++...+.+++|||.+|-
T Consensus 25 ~~f~~~~~~l~pgg~lil 42 (110)
T pfam06859 25 RFFRRIYRLLRPGGILIL 42 (110)
T ss_pred HHHHHHHHHHCCCCEEEE
T ss_conf 999999996188988999
No 339
>pfam08399 VWA_N VWA N-terminal. This domain is found at the N-terminus of proteins containing von Willebrand factor type A (VWA, pfam00092) and Cache (pfam02743) domains. It has been found in vertebrates, Drosophila and C. elegans but has not yet been identified in other eukaryotes. It is probably involved in the function of some voltage-dependent calcium channel subunits.
Probab=35.56 E-value=7.9 Score=18.56 Aligned_cols=15 Identities=47% Similarity=0.809 Sum_probs=11.9
Q ss_pred CCCCHHHHHHHHHHH
Q ss_conf 445044444223667
Q gi|254780634|r 309 CSGTGTWRRRPDIKW 323 (429)
Q Consensus 309 CSg~G~~rr~Pe~~w 323 (429)
||.+|.+|.-|-++|
T Consensus 109 GS~tG~~R~yPa~~W 123 (123)
T pfam08399 109 GSATGFFRYYPATKW 123 (123)
T ss_pred ECCCCCEEECCCCCC
T ss_conf 067533022568789
No 340
>KOG1678 consensus
Probab=35.51 E-value=14 Score=16.88 Aligned_cols=27 Identities=33% Similarity=0.573 Sum_probs=21.6
Q ss_pred CCCCEEEECCCCCCCHHHHHHHHHHHHCCH
Q ss_conf 324678962754450444442236672496
Q gi|254780634|r 298 EHFTTVLVDAPCSGTGTWRRRPDIKWRLSQ 327 (429)
Q Consensus 298 ~~fd~vl~DaPCSg~G~~rr~Pe~~w~~~~ 327 (429)
-.|..||+|.- --.|||+|++-|-..|
T Consensus 128 k~fEVIlvDp~---h~aIRrdp~~nwI~kp 154 (204)
T KOG1678 128 KYFEVILVDPF---HKAIRRDPRINWICKP 154 (204)
T ss_pred EEEEEEEECCH---HHHHHCCCCCCCCCCH
T ss_conf 25899998717---8887429874401252
No 341
>TIGR00750 lao LAO/AO transport system ATPase; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli K-12, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase..
Probab=35.38 E-value=14 Score=16.89 Aligned_cols=45 Identities=16% Similarity=0.078 Sum_probs=27.0
Q ss_pred HCCHHH-HHHHH---HHCCCCCCCCCCCCCCCCHH-------HHHHHHHHCCCCCC
Q ss_conf 574489-99999---86289861112477889989-------99998987188754
Q gi|254780634|r 137 YFKDTW-LKEAK---SLSMRAPLDLRTNTLKVNRC-------KLFKNLCHYGVHHS 181 (429)
Q Consensus 137 ~~ge~~-~~~l~---a~~~~~pl~iRvN~~k~~~~-------~~~~~L~~~gi~~~ 181 (429)
-+||.. .+-+. .+-..|-+|||-=+.+.... ++...|.+.|.+..
T Consensus 85 iLGDr~Rm~~~asrkqlW~dPg~FIRs~ptrG~lGGls~at~~~~~lldA~G~DVI 140 (333)
T TIGR00750 85 ILGDRLRMQRLASRKQLWTDPGVFIRSMPTRGSLGGLSKATRELVKLLDAAGYDVI 140 (333)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCEE
T ss_conf 54568877544222233228985676776667525787999999999986389879
No 342
>pfam09033 DFF-C DNA Fragmentation factor 45kDa, C terminal domain. The C terminal domain of DNA Fragmentation factor 45kDa (DFF-C) consists of four alpha-helices, which are folded in a helix-packing arrangement, with alpha-2 and alpha-3 packing against a long C-terminal helix (alpha-4). The main function of this domain is the inhibition of DFF40 by binding to its C-terminal catalytic domain through ionic interactions, thereby inhibiting the fragmentation of DNA in the apoptotic process. In addition to blocking the DNase activity of DFF40, the C-terminal region of DFF45 is also important for the DFF40-specific folding chaperone activity, as demonstrated by the ability of DFF45 to refold DFF40.
Probab=34.58 E-value=21 Score=15.64 Aligned_cols=60 Identities=22% Similarity=0.334 Sum_probs=28.0
Q ss_pred EEECCCCCCCHH-HHHHHHHHHH---CCHHHH---HHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHCHHHH
Q ss_conf 896275445044-4442236672---496789---9999987899999999608983899977588824299989
Q gi|254780634|r 303 VLVDAPCSGTGT-WRRRPDIKWR---LSQKNL---IERTEEQKKILEESAQFVRPEGYLVYITCSILPEENIQQI 370 (429)
Q Consensus 303 vl~DaPCSg~G~-~rr~Pe~~w~---~~~~~~---~~~~~lQ~~iL~~a~~~lk~gG~lvYsTCS~~~~Ene~vv 370 (429)
||+|+|||-+.- +.-.+ .+-+ -+-+.+ .+=..--+++|+-..+.|+..|.+ .+.|-+...
T Consensus 50 ~LiDvPcsdLA~el~qs~-~kvq~LQ~TLQqVLDrREE~RQSkqLLeLYL~AlekEg~i-------k~~e~~a~~ 116 (164)
T pfam09033 50 MLIDVPCSELAQELGQSC-AKVQGLQDTLQRVLDRREEERQSKQLLELYLKALEKEGTI-------KQQESSAAL 116 (164)
T ss_pred HHHCCCHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-------CCCCCCCCH
T ss_conf 997288278999998769-9999999999999988899988899999999999872786-------524542206
No 343
>KOG3350 consensus
Probab=34.47 E-value=8.8 Score=18.23 Aligned_cols=103 Identities=10% Similarity=0.143 Sum_probs=54.7
Q ss_pred CCEEEEECCCCCCCCCCCCC-CCCCEEEECCCCCCHHHHH-HHHHHCCCCEEHHHHCCHHHHHHHHHHHHHCCCCCCEE-
Q ss_conf 65489841556542112366-6662586013468827999-99986168810055249899999999987502886088-
Q gi|254780634|r 210 RGWFEIQDEGSQIVSNLTAI-TNSSQILDFCAGGGGKTLA-LSMLLNNKGQIHAWDNNKSRMAPIVARIKRAGIHNVQL- 286 (429)
Q Consensus 210 ~G~~~VQD~aSql~~~~l~~-~~g~~vLD~CAapGGKt~~-la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~- 286 (429)
+-.|+-+|.+.+++...+.. ..|. ++-+-++|---..+ +-+.--+.-.|+-.+.+ .|+++.|-.-+.-
T Consensus 51 sqfwy~~eta~~La~e~v~~s~e~~-rIacvS~Psly~y~k~re~~~~~~~v~lfEfD--------kRFe~yg~eFvfYD 121 (217)
T KOG3350 51 SQFWYSDETARKLAAERVEASGEGS-RIACVSCPSLYVYQKKREIEIPHDQVYLFEFD--------KRFELYGTEFVFYD 121 (217)
T ss_pred HHHHCCHHHHHHHHHHHHHHCCCCC-EEEEEECCHHHHHHHHHHCCCCCEEEEEEEEH--------HHHHHCCCEEEEEC
T ss_conf 6551377799999999985235685-69997176077655213116775069998722--------46775045257850
Q ss_pred -EECCCCCCCCCCCCCEEEECCCCCCCHHHHHHHHH
Q ss_conf -21554344572324678962754450444442236
Q gi|254780634|r 287 -HSSWESLRNLQEHFTTVLVDAPCSGTGTWRRRPDI 321 (429)
Q Consensus 287 -~~~~~~~~~~~~~fd~vl~DaPCSg~G~~rr~Pe~ 321 (429)
....+....++++||.|+.|.|-=+.--++|--++
T Consensus 122 yN~p~dlp~~lk~~fdiivaDPPfL~~eCl~Kts~t 157 (217)
T KOG3350 122 YNCPLDLPDELKAHFDIIVADPPFLSEECLAKTSET 157 (217)
T ss_pred CCCCCCCHHHHHHCCCEEEECCCCCCCHHHHHHHHH
T ss_conf 689777779997401689717865461666666899
No 344
>PRK11107 hybrid sensory histidine kinase BarA; Provisional
Probab=34.38 E-value=27 Score=14.93 Aligned_cols=52 Identities=8% Similarity=0.103 Sum_probs=32.2
Q ss_pred EEHHHHCCHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCCEEEECCCCCCC
Q ss_conf 1005524989999999998750288608821554344572324678962754450
Q gi|254780634|r 258 QIHAWDNNKSRMAPIVARIKRAGIHNVQLHSSWESLRNLQEHFTTVLVDAPCSGT 312 (429)
Q Consensus 258 ~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~~~~~~~~~~~fd~vl~DaPCSg~ 312 (429)
+|.-+|.++.-...+...+.+.|+...... .... .....||.+++|.|.+..
T Consensus 538 ~vlvve~~~~~~~~l~~~L~~~g~~v~~~~-~~~~--l~~~~~D~~li~~~~~~~ 589 (920)
T PRK11107 538 RLLYVEPNSLAAQATLDLLSETPLEVTYSP-TLSQ--LPEAHYDYLLLGCPVTFR 589 (920)
T ss_pred EEEEECCCHHHHHHHHHHHHHCCCEEEECC-CHHH--HHCCCCCEEEECCCCCCC
T ss_conf 699976977899999999997496457517-8877--513688879961666665
No 345
>pfam03746 LamB_YcsF LamB/YcsF family. This family includes LamB. The lam locus of Aspergillus nidulans consists of two divergently transcribed genes, lamA and lamB, involved in the utilisation of lactams such as 2-pyrrolidinone. Both genes are under the control of the positive regulatory gene amdR and are subject to carbon and nitrogen metabolite repression. The exact molecular function of the proteins in this family is unknown.
Probab=34.30 E-value=31 Score=14.50 Aligned_cols=58 Identities=22% Similarity=0.180 Sum_probs=31.9
Q ss_pred CCHHHHHHHHHHHHHHHHHHH-------HHHCCCCEEEEEECCCCHHHCHHHHHHHHHHCCCCEEE
Q ss_conf 496789999998789999999-------96089838999775888242999899999857997994
Q gi|254780634|r 325 LSQKNLIERTEEQKKILEESA-------QFVRPEGYLVYITCSILPEENIQQINYFLSKNPHFSID 383 (429)
Q Consensus 325 ~~~~~~~~~~~lQ~~iL~~a~-------~~lk~gG~lvYsTCS~~~~Ene~vv~~fL~~~~~~~~~ 383 (429)
++++++.+...-|...|...+ ..+||.|-| |-.+.-+++=-+.+++.+-.-+|+..+.
T Consensus 77 ~s~~el~~~i~~Qi~al~~~a~~~g~~l~hVKPHGAL-Yn~~~~d~~la~~i~~ai~~~~~~l~l~ 141 (242)
T pfam03746 77 LSAEELYALVLYQIGALQAFARAQGLRLQHVKPHGAL-YNMAAKDRALARAVAEAVYDFDPALPLM 141 (242)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHH-HHHHHCCHHHHHHHHHHHHHHCCCCEEE
T ss_conf 9989999999999999999999829963113531999-9999659999999999999869985288
No 346
>cd03466 Nitrogenase_NifN_2 Nitrogenase_nifN_2: A subgroup of the NifN subunit of the NifEN complex: NifN forms an alpha2beta2 tetramer with NifE. NifN and nifE are structurally homologous to nitrogenase MoFe protein beta and alpha subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The nifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this nifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco). This group also contains the Clostidium fused NifN-NifB protein.
Probab=33.88 E-value=32 Score=14.46 Aligned_cols=42 Identities=10% Similarity=0.120 Sum_probs=20.8
Q ss_pred HHHHHHHCCCCCCCCCCCCC-----CCCHHHHHHHHHHCCCCCCCCC
Q ss_conf 99999862898611124778-----8998999998987188754547
Q gi|254780634|r 143 LKEAKSLSMRAPLDLRTNTL-----KVNRCKLFKNLCHYGVHHSSIS 184 (429)
Q Consensus 143 ~~~l~a~~~~~pl~iRvN~~-----k~~~~~~~~~L~~~gi~~~~~~ 184 (429)
.++++.+-.++.-.=+||.. ..+..++...|++.|++..-++
T Consensus 142 ~ali~~~~~~~~~~~~vNli~~~~~~gD~~eik~ll~~~Gl~~~vlp 188 (429)
T cd03466 142 RSIVKNIAVDPDKIEKINVIAGMMSPADIREIKEILREFGIEYILLP 188 (429)
T ss_pred HHHHHHHCCCCCCCCCEEECCCCCCHHHHHHHHHHHHHCCCCEEECC
T ss_conf 99999847798878856781798976669999999998299579714
No 347
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=33.72 E-value=32 Score=14.44 Aligned_cols=122 Identities=16% Similarity=0.245 Sum_probs=67.0
Q ss_pred CCCCEEEECCCCCCHHHHHHHHHHCCCCEEHHHHCCHHHHHHHHHHHHHCCCCC-CEEEECCCCCCCC--CCCCCEEEEC
Q ss_conf 666258601346882799999986168810055249899999999987502886-0882155434457--2324678962
Q gi|254780634|r 230 TNSSQILDFCAGGGGKTLALSMLLNNKGQIHAWDNNKSRMAPIVARIKRAGIHN-VQLHSSWESLRNL--QEHFTTVLVD 306 (429)
Q Consensus 230 ~~g~~vLD~CAapGGKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~-v~~~~~~~~~~~~--~~~fd~vl~D 306 (429)
+.+.+++|.|+--+==...+-..-. .-.++|.|+++.-++....++.+.++.. +.+...|. +..+ ...+|.|.+-
T Consensus 15 ~~~~~iaDIGsDHAYLp~~Lv~~~~-~~~~va~eV~~gpl~~a~~~v~~~~l~~~i~vr~~dg-l~~l~~~d~~d~ivIA 92 (226)
T COG2384 15 KQGARIADIGSDHAYLPIYLVKNNP-ASTAVAGEVVPGPLESAIRNVKKNNLSERIDVRLGDG-LAVLELEDEIDVIVIA 92 (226)
T ss_pred HCCCCEEECCCCHHHHHHHHHHCCC-CCEEEEEECCCCHHHHHHHHHHHCCCCCEEEEECCCC-CCCCCCCCCCCEEEEE
T ss_conf 7599455326762576899996598-3268983106678999999887458852077752687-3125766776879995
Q ss_pred CCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHCHHHHHHHHHHCCCCEEE
Q ss_conf 75445044444223667249678999999878999999996089838999775888242999899999857997994
Q gi|254780634|r 307 APCSGTGTWRRRPDIKWRLSQKNLIERTEEQKKILEESAQFVRPEGYLVYITCSILPEENIQQINYFLSKNPHFSID 383 (429)
Q Consensus 307 aPCSg~G~~rr~Pe~~w~~~~~~~~~~~~lQ~~iL~~a~~~lk~gG~lvYsTCS~~~~Ene~vv~~fL~~~~~~~~~ 383 (429)
|+|- .+=.+||++..+.++.--+|| +.|--++..++.+|..|. |.+.
T Consensus 93 ----GMGG--------------------~lI~~ILee~~~~l~~~~rlI-----LQPn~~~~~LR~~L~~~~-~~I~ 139 (226)
T COG2384 93 ----GMGG--------------------TLIREILEEGKEKLKGVERLI-----LQPNIHTYELREWLSANS-YEIK 139 (226)
T ss_pred ----CCCH--------------------HHHHHHHHHHHHHHCCCCEEE-----ECCCCCHHHHHHHHHHCC-CEEE
T ss_conf ----7867--------------------899999998665505741078-----788878899999999679-5144
No 348
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=33.37 E-value=32 Score=14.41 Aligned_cols=158 Identities=14% Similarity=0.190 Sum_probs=78.2
Q ss_pred HHHHCCCHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 23508998899999985744899999986289861112477889989999989871887545475431134566544461
Q gi|254780634|r 121 HIQGNIPQWLQSSFQSYFKDTWLKEAKSLSMRAPLDLRTNTLKVNRCKLFKNLCHYGVHHSSISRFGLRIPATKGKSRLP 200 (429)
Q Consensus 121 ~i~~s~P~WL~~~~~~~~ge~~~~~l~a~~~~~pl~iRvN~~k~~~~~~~~~L~~~gi~~~~~~~~~~~l~~~~~~~~~~ 200 (429)
++...+|+|+.......|-+. .+++..-|.=|-+.=||=|.-.--|. .-.+ +....| ..|....
T Consensus 224 Pv~~~IP~~i~~i~~g~~~eA-~~~i~~tN~lP~icGRVCP~~~~CE~-aC~~---~~~~~p-----VaIg~LE------ 287 (639)
T PRK12809 224 PLHNAIPDYIRLVQEGKIIEA-AELCHQTSSLPEICGRVCPQDRLCEG-ACTL---KDHSGA-----VSIGNLE------ 287 (639)
T ss_pred CCCCCHHHHHHHHHCCCHHHH-HHHHHHHCCCHHHHCCCCCCCCCHHH-HCCC---CCCCCC-----EEECHHH------
T ss_conf 899977899999986999999-99998648802432366899866698-6528---999998-----5788899------
Q ss_pred CHHCCHHHCCCEEEEECCCCCCCCCCCC-CCCCCEEEECCCCCCHHHHH-HHHHHCCCCE----------EH-----HHH
Q ss_conf 0110963126548984155654211236-66662586013468827999-9998616881----------00-----552
Q gi|254780634|r 201 NVMNDITFQRGWFEIQDEGSQIVSNLTA-ITNSSQILDFCAGGGGKTLA-LSMLLNNKGQ----------IH-----AWD 263 (429)
Q Consensus 201 ~~~~~~~f~~G~~~VQD~aSql~~~~l~-~~~g~~vLD~CAapGGKt~~-la~~~~~~g~----------i~-----A~D 263 (429)
-.....+|.+|+. .+ .-. ...|.+|-=.-|||.|=|.. -..+++-+-. +. ..=
T Consensus 288 Rfi~D~a~~~g~~--p~--------~~~~~~~gkKVAVIGsGPAGLaaA~~Lar~G~~VTVfE~~~~~GGlL~yGIP~fR 357 (639)
T PRK12809 288 RYITDTALAMGWR--PD--------VSKVVPRSEKVAVIGAGPAGLGCADILARAGVQVDVFDRHPEIGGMLTFGIPPFK 357 (639)
T ss_pred HHHHHHHHHHCCC--CC--------CCCCCCCCCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCEEEECCCCCC
T ss_conf 9999999983998--88--------7776888998999897589999999999759906999368888986853587452
Q ss_pred CCHHHHHHHHHHHHHCCCC---CCEEEECCCCCCCCCCCCCEEEE
Q ss_conf 4989999999998750288---60882155434457232467896
Q gi|254780634|r 264 NNKSRMAPIVARIKRAGIH---NVQLHSSWESLRNLQEHFTTVLV 305 (429)
Q Consensus 264 ~~~~Rl~~l~~~~~r~g~~---~v~~~~~~~~~~~~~~~fd~vl~ 305 (429)
+.+.-+..-.+.++.+|+. |+.+- .+.++..+...||.|++
T Consensus 358 LPK~vv~rei~~l~~lGV~f~~n~~VG-kDit~~eL~~~yDAVfl 401 (639)
T PRK12809 358 LDKTVLSQRREIFTAMGIDFHLNCEIG-RDITFSDLTSEYDAVFI 401 (639)
T ss_pred CCHHHHHHHHHHHHHCCCEEEECCEEC-CCCCHHHHHHHCCEEEE
T ss_conf 777899999999986498899196779-86889999731798999
No 349
>cd01981 Pchlide_reductase_B Pchlide_reductase_B: B protein of the NB protein complex of Protochlorophyllide (Pchlide)_reductase. Pchlide reductase catalyzes the reductive formation of chlorophyllide (chlide) from protochlorophyllide (pchlide) during biosynthesis of chlorophylls and bacteriochlorophylls. This group contains both the light-independent Pchlide reductase (DPOR) and light-dependent Pchlide reductase (LPOR). Angiosperms contain only LPOR, cyanobacteria, algae and gymnosperms contain both DPOR and LPOR, primitive anoxygenic photosynthetic bacteria contain only DPOR. NB is structurally similar to the FeMo protein of nitrogenase, forming an N2B2 heterotetramer. N and B are homologous to the FeMo alpha and beta subunits respectively. Also in common with nitrogenase in vitro DPOR activity requires ATP hydrolysis and dithoionite or ferredoxin as electron donor. The NB protein complex may serve as a catalytic site for Pchlide reduction similar to MoFe for nitrogen reduction.
Probab=32.69 E-value=33 Score=14.33 Aligned_cols=69 Identities=9% Similarity=-0.082 Sum_probs=33.7
Q ss_pred CCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCHHHCCCEEEEECCCCCCCCCCCCCCCCCEEEECCCCCC
Q ss_conf 99899999898718875454754311345665444610110963126548984155654211236666625860134688
Q gi|254780634|r 164 VNRCKLFKNLCHYGVHHSSISRFGLRIPATKGKSRLPNVMNDITFQRGWFEIQDEGSQIVSNLTAITNSSQILDFCAGGG 243 (429)
Q Consensus 164 ~~~~~~~~~L~~~gi~~~~~~~~~~~l~~~~~~~~~~~~~~~~~f~~G~~~VQD~aSql~~~~l~~~~g~~vLD~CAapG 243 (429)
.+..++...|+..|++.....|.+..+.+.....+ .+--+..+..++..++..|.-+-|...+.. .|=
T Consensus 179 gD~~eikrll~~~Gi~v~~~~p~~~t~~ei~~~~~----------A~lnvv~~~~~~~~~a~~Le~~~giP~~~~--~Pi 246 (430)
T cd01981 179 HDCRELKRLLHTLGIEVNVVIPEGASVDDLNELPK----------AWFNIVPYREYGLSAALYLEEEFGMPSVKI--TPI 246 (430)
T ss_pred HHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHH----------CCEEEEEHHHHHHHHHHHHHHHHCCCEECC--CCC
T ss_conf 68999999999839918998189999999986412----------667786049899999999999859873604--766
Q ss_pred H
Q ss_conf 2
Q gi|254780634|r 244 G 244 (429)
Q Consensus 244 G 244 (429)
|
T Consensus 247 G 247 (430)
T cd01981 247 G 247 (430)
T ss_pred C
T ss_conf 7
No 350
>pfam00072 Response_reg Response regulator receiver domain. This domain receives the signal from the sensor partner in bacterial two-component systems. It is usually found N-terminal to a DNA binding effector domain.
Probab=32.60 E-value=23 Score=15.37 Aligned_cols=48 Identities=13% Similarity=0.102 Sum_probs=30.0
Q ss_pred HHHHCCHHHHHHHHHHHHHCCCCCCEEEECCCCCCC-CCCCCCEEEECC
Q ss_conf 055249899999999987502886088215543445-723246789627
Q gi|254780634|r 260 HAWDNNKSRMAPIVARIKRAGIHNVQLHSSWESLRN-LQEHFTTVLVDA 307 (429)
Q Consensus 260 ~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~~~~~~~-~~~~fd~vl~Da 307 (429)
..+|-++.=...+..-+++.|+....+.+....... ....||.|++|.
T Consensus 2 LvVDD~~~~~~~l~~~L~~~g~~v~~a~~g~~al~~~~~~~~dlvi~Di 50 (111)
T pfam00072 2 LIVDDDPLIRELLRQLLEKEGYVVAEADDGEEALELLKEKRPDLILLDI 50 (111)
T ss_pred EEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEEC
T ss_conf 9998989999999999998899999989999999999847998999953
No 351
>PRK10701 DNA-binding transcriptional regulator RstA; Provisional
Probab=32.53 E-value=29 Score=14.76 Aligned_cols=13 Identities=15% Similarity=0.281 Sum_probs=8.1
Q ss_pred CCCCEEEEECCCC
Q ss_conf 7698499804479
Q gi|254780634|r 403 IENGCCVLTPFLT 415 (429)
Q Consensus 403 ~~~~~~~~~P~~~ 415 (429)
..+.++++.||.-
T Consensus 226 vrG~GY~f~p~a~ 238 (240)
T PRK10701 226 VRNKGYLFAPHAW 238 (240)
T ss_pred ECCCCEEECCCCC
T ss_conf 8181851857755
No 352
>COG3706 PleD Response regulator containing a CheY-like receiver domain and a GGDEF domain [Signal transduction mechanisms]
Probab=32.46 E-value=31 Score=14.50 Aligned_cols=11 Identities=9% Similarity=0.338 Sum_probs=5.1
Q ss_pred CCCCEEEECCC
Q ss_conf 32467896275
Q gi|254780634|r 298 EHFTTVLVDAP 308 (429)
Q Consensus 298 ~~fd~vl~DaP 308 (429)
..+-..++|.+
T Consensus 300 ~pls~~m~DID 310 (435)
T COG3706 300 RPLSLLMLDID 310 (435)
T ss_pred CCCEEEEEECC
T ss_conf 97169997130
No 353
>pfam03511 Fanconi_A Fanconi anaemia group A protein.
Probab=32.46 E-value=33 Score=14.31 Aligned_cols=38 Identities=21% Similarity=0.122 Sum_probs=29.8
Q ss_pred CCCCHHHHHHHHHHCCCCEEHHHHCCHHHHHHHHHHHHHC
Q ss_conf 4688279999998616881005524989999999998750
Q gi|254780634|r 240 AGGGGKTLALSMLLNNKGQIHAWDNNKSRMAPIVARIKRA 279 (429)
Q Consensus 240 AapGGKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~ 279 (429)
-+|||-.-.-++... |.+-|.|+.+.|++.|+++..++
T Consensus 13 ~~~~g~r~~~~e~lA--~~lKa~d~caE~~qcLe~r~v~~ 50 (64)
T pfam03511 13 GGGLGLRKLTQEDLA--EHLKAQDICAEREQCLEDRALKL 50 (64)
T ss_pred CCCCHHHHHHHHHHH--HHHHHHHCCHHHHHHHHHHHHHH
T ss_conf 998218898999999--99998740899999999988699
No 354
>KOG3421 consensus
Probab=31.89 E-value=12 Score=17.22 Aligned_cols=12 Identities=50% Similarity=1.115 Sum_probs=7.3
Q ss_pred CEEEECCCCCCC
Q ss_conf 678962754450
Q gi|254780634|r 301 TTVLVDAPCSGT 312 (429)
Q Consensus 301 d~vl~DaPCSg~ 312 (429)
.+||+|.|||+.
T Consensus 34 nr~lvDGp~t~v 45 (136)
T KOG3421 34 NRALVDGPCTGV 45 (136)
T ss_pred HHHHCCCCCCCC
T ss_conf 235304864456
No 355
>cd00740 MeTr MeTr subgroup of pterin binding enzymes. This family includes cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.
Probab=31.86 E-value=34 Score=14.24 Aligned_cols=18 Identities=33% Similarity=0.512 Sum_probs=13.8
Q ss_pred CCCCCCEEEECCCCCCHH
Q ss_conf 666662586013468827
Q gi|254780634|r 228 AITNSSQILDFCAGGGGK 245 (429)
Q Consensus 228 ~~~~g~~vLD~CAapGGK 245 (429)
+.+.|..+||+|.|+.+.
T Consensus 35 Q~~~GA~~LDVN~g~~~~ 52 (252)
T cd00740 35 QVEGGAQILDLNVDYGGL 52 (252)
T ss_pred HHHCCCCEEEECCCCCCC
T ss_conf 998499889952896453
No 356
>pfam06564 YhjQ YhjQ protein. This family consists of several bacterial YhjQ proteins. The function of this family is unknown. However, the family does contain a P-loop sequence motif suggesting a nucleotide binding function.
Probab=31.49 E-value=26 Score=14.99 Aligned_cols=20 Identities=20% Similarity=0.391 Sum_probs=13.8
Q ss_pred CCCCEEEECCCCCCCHHHHHH
Q ss_conf 324678962754450444442
Q gi|254780634|r 298 EHFTTVLVDAPCSGTGTWRRR 318 (429)
Q Consensus 298 ~~fd~vl~DaPCSg~G~~rr~ 318 (429)
+.||.||+|.|+| .|.+-++
T Consensus 116 ~~yD~iliD~Pp~-l~~l~~~ 135 (244)
T pfam06564 116 GQYRWILLDLPQG-FSPLTRQ 135 (244)
T ss_pred CCCCEEEEECCCC-CHHHHHH
T ss_conf 7899999979999-6899999
No 357
>TIGR03172 probable selenium-dependent hydroxylase accessory protein YqeC. This uncharacterized protein family includes YqeC from Escherichia coli. A phylogenetic profiling analysis shows correlation with SelD, the selenium donor protein, even in species where SelD contributes to neither selenocysteine nor selenouridine biosynthesis. Instead, this family, and families TIGR03309 and TIGR03310 appear to mark selenium-dependent molybdenum hydroxylase maturation systems.
Probab=31.43 E-value=28 Score=14.85 Aligned_cols=40 Identities=5% Similarity=0.103 Sum_probs=15.2
Q ss_pred HHHHHHHHHC---CCCEEEEEECCCCHHHCHH----HHHHHHHHCCC
Q ss_conf 9999999608---9838999775888242999----89999985799
Q gi|254780634|r 340 ILEESAQFVR---PEGYLVYITCSILPEENIQ----QINYFLSKNPH 379 (429)
Q Consensus 340 iL~~a~~~lk---~gG~lvYsTCS~~~~Ene~----vv~~fL~~~~~ 379 (429)
|+.+..-++| +++.-+---=-+..+++.+ +++.+|++++.
T Consensus 174 li~~~~G~~K~~~~~~~~i~~iNk~D~~~~~~~A~~i~~~ll~~~~~ 220 (232)
T TIGR03172 174 LIAHPQGGFKNAPAHARRIWLLNKVDTACEFQIARAVLKQLLQRCFK 220 (232)
T ss_pred HHHCCCCHHCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHCCC
T ss_conf 98594200058987850899985668888999999999999983787
No 358
>PRK13837 two-component VirA-like sensor kinase; Provisional
Probab=31.30 E-value=35 Score=14.18 Aligned_cols=31 Identities=10% Similarity=0.073 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCEEEEEECCC
Q ss_conf 9999987899999999608983899977588
Q gi|254780634|r 331 IERTEEQKKILEESAQFVRPEGYLVYITCSI 361 (429)
Q Consensus 331 ~~~~~lQ~~iL~~a~~~lk~gG~lvYsTCS~ 361 (429)
..+...=..|+.||.+....||.+.-+|...
T Consensus 562 ~QL~QVllNL~~NA~dAM~~gG~l~I~~~~~ 592 (831)
T PRK13837 562 AQLQQVILNLCKNAAQAMDENGRVDIRLSRV 592 (831)
T ss_pred HHHHHHHHHHHHHHHHHCCCCCEEEEEEEEE
T ss_conf 9999999999999999767998699998555
No 359
>cd01974 Nitrogenase_MoFe_beta Nitrogenase_MoFe_beta: Nitrogenase MoFe protein, beta subunit. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Molybdenum (Mo-) nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. This group contains the beta subunit of the MoFe protein. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=31.29 E-value=35 Score=14.18 Aligned_cols=27 Identities=7% Similarity=-0.098 Sum_probs=15.5
Q ss_pred CCEEEEEECCCCHHHCHHHHHHHHHHC
Q ss_conf 838999775888242999899999857
Q gi|254780634|r 351 EGYLVYITCSILPEENIQQINYFLSKN 377 (429)
Q Consensus 351 gG~lvYsTCS~~~~Ene~vv~~fL~~~ 377 (429)
|-..++..|+--+.+-++.++.++...
T Consensus 326 G~~~~~vv~~~~~~~~~~~i~~~~~~~ 352 (435)
T cd01974 326 GMEPVHVLTGNGGKRFEKEMQALLDAS 352 (435)
T ss_pred CCEEEEEEECCCCHHHHHHHHHHHHHC
T ss_conf 997899997999778999999998625
No 360
>TIGR02868 CydC ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease/ATP-binding protein CydC; InterPro: IPR014223 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This entry represents CydC, a member of a heterodimeric ATP-binding cassette-type transporter (ABC transporter). It is involved in the export of glutathione from the cytoplasm to the periplasm and is required for the assembly of both cytochrome c and cytochrome bd , , .; GO: 0042626 ATPase activity coupled to transmembrane movement of substances, 0006810 transport, 0016021 integral to membrane.
Probab=30.64 E-value=36 Score=14.11 Aligned_cols=58 Identities=16% Similarity=0.192 Sum_probs=42.7
Q ss_pred EEEECCCCCCC--------CCCCCCCCCCEEEECCCCCCHHHHHHHHHHC----CCCEEHHHHCCHHHHH
Q ss_conf 89841556542--------1123666662586013468827999999861----6881005524989999
Q gi|254780634|r 213 FEIQDEGSQIV--------SNLTAITNSSQILDFCAGGGGKTLALSMLLN----NKGQIHAWDNNKSRMA 270 (429)
Q Consensus 213 ~~VQD~aSql~--------~~~l~~~~g~~vLD~CAapGGKt~~la~~~~----~~g~i~A~D~~~~Rl~ 270 (429)
..++|.+...+ .--|+.+||++|-=..+.-=|||+.++-+++ .+|+|+-++++.+-+.
T Consensus 360 L~~~~ls~~~pg~~~~vl~~V~L~l~~G~r~Ai~G~SG~GKsTLL~~L~G~l~P~~G~vtl~G~~~~~~~ 429 (566)
T TIGR02868 360 LELRDLSVGYPGAPPNVLDGVSLDLPPGERVAILGPSGSGKSTLLATLAGLLDPLQGEVTLDGVPVSSLS 429 (566)
T ss_pred EEEEEEEEECCCCCHHHHCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCCEEECCCCHHHCC
T ss_conf 7898776526987346542786411388608986688765789999998402899991787773243257
No 361
>PRK10841 hybrid sensory kinase in two-component regulatory system with RcsB and YojN; Provisional
Probab=30.50 E-value=36 Score=14.09 Aligned_cols=15 Identities=27% Similarity=0.397 Sum_probs=8.0
Q ss_pred HHHHHHHHHHCCCCC
Q ss_conf 999999987502886
Q gi|254780634|r 269 MAPIVARIKRAGIHN 283 (429)
Q Consensus 269 l~~l~~~~~r~g~~~ 283 (429)
-..+..-+.+.|+..
T Consensus 719 ~~~l~~~L~~~Gi~v 733 (947)
T PRK10841 719 EQFLETLLQRSGIHV 733 (947)
T ss_pred HHHHHHHHHHCCCEE
T ss_conf 999999998659537
No 362
>COG2189 Adenine specific DNA methylase Mod [DNA replication, recombination, and repair]
Probab=30.40 E-value=30 Score=14.63 Aligned_cols=26 Identities=38% Similarity=0.592 Sum_probs=13.1
Q ss_pred CCCCCCEEEECCCCCCHHHHHHHHHHC
Q ss_conf 666662586013468827999999861
Q gi|254780634|r 228 AITNSSQILDFCAGGGGKTLALSMLLN 254 (429)
Q Consensus 228 ~~~~g~~vLD~CAapGGKt~~la~~~~ 254 (429)
.+..++.|||.|||- |.|++-|..|.
T Consensus 450 ~~~~~d~vld~~~gs-gtt~~~~~~~~ 475 (590)
T COG2189 450 TTNKNDLVLDFFAGS-GTTTAVAHKLN 475 (590)
T ss_pred CCCCCCHHHHHHCCC-CCHHHHHHHHH
T ss_conf 788764332212488-75117788654
No 363
>pfam02702 KdpD Osmosensitive K+ channel His kinase sensor domain. This is a family of KdpD sensor kinase proteins that regulate the kdpFABC operon responsible for potassium transport. The aligned region corresponds to the N-terminal cytoplasmic part of the protein which may be the sensor domain responsible for sensing turgor pressure.
Probab=30.24 E-value=36 Score=14.06 Aligned_cols=136 Identities=18% Similarity=0.217 Sum_probs=63.6
Q ss_pred CCEEEECCCCCC-HHHHHHHHH---HCCCC--EEHH-HHCCHH-HHHHHHHHHHHCCCCCCEEE----ECCCCCCCCCCC
Q ss_conf 625860134688-279999998---61688--1005-524989-99999999875028860882----155434457232
Q gi|254780634|r 232 SSQILDFCAGGG-GKTLALSML---LNNKG--QIHA-WDNNKS-RMAPIVARIKRAGIHNVQLH----SSWESLRNLQEH 299 (429)
Q Consensus 232 g~~vLD~CAapG-GKt~~la~~---~~~~g--~i~A-~D~~~~-Rl~~l~~~~~r~g~~~v~~~----~~~~~~~~~~~~ 299 (429)
|.-=+=+.+||| |||..|.+- ....| .|+. ++.|.. ....+.+.++..-...+.-. ...+.-.-+..+
T Consensus 4 G~LkIylG~apGVGKTy~ML~eA~~l~~~G~DVViG~vEthgR~eT~~l~~gLe~iP~~~~~y~g~~~~E~Dldail~R~ 83 (211)
T pfam02702 4 GKLKIFLGAAPGVGKTYAMLSEAHELLERGVDVVIGYVETHGRAETAALLEGLEVIPRKEIEYRGVTLEEMDLDAILARK 83 (211)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHCC
T ss_conf 61689853599877899999999999978995699995379978999997687668871253688553507999998539
Q ss_pred CCEEEECCCCCCCHHH-HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHCHH----------
Q ss_conf 4678962754450444-44223667249678999999878999999996089838999775888242999----------
Q gi|254780634|r 300 FTTVLVDAPCSGTGTW-RRRPDIKWRLSQKNLIERTEEQKKILEESAQFVRPEGYLVYITCSILPEENIQ---------- 368 (429)
Q Consensus 300 fd~vl~DaPCSg~G~~-rr~Pe~~w~~~~~~~~~~~~lQ~~iL~~a~~~lk~gG~lvYsTCS~~~~Ene~---------- 368 (429)
.+.||+|=-- -+..- .||+ -|| +|++++- . -|+=||+|--+.--|.-.
T Consensus 84 P~vvLVDELA-HtN~pgsr~~-KR~----qDVeeLL--------------~-aGIdV~TTlNvQHlESlnd~V~~iTgv~ 142 (211)
T pfam02702 84 PQLVLVDELA-HTNAPGSRHE-KRW----QDVEELL--------------D-AGIDVYTTVNVQHLESLNDVVERITGVR 142 (211)
T ss_pred CCEEEEECCC-CCCCCCCCCC-CCH----HHHHHHH--------------H-CCCEEEEECHHHHHHHHHHHHHHHCCCC
T ss_conf 9989984455-6799988887-547----7499999--------------8-7990886014776652678999722985
Q ss_pred ----HHHHHHHHCCCCEEEECCCC
Q ss_conf ----89999985799799414300
Q gi|254780634|r 369 ----QINYFLSKNPHFSIDSIIDD 388 (429)
Q Consensus 369 ----vv~~fL~~~~~~~~~~~~~~ 388 (429)
|=.+||..-.+.+++++.+.
T Consensus 143 vrEtVPD~vl~~Adei~lVD~~Pe 166 (211)
T pfam02702 143 VRETVPDSVLDEADEVVLVDLTPE 166 (211)
T ss_pred CCCCCCHHHHHHCCEEEECCCCHH
T ss_conf 477188899953582798169979
No 364
>KOG3124 consensus
Probab=30.13 E-value=36 Score=14.05 Aligned_cols=40 Identities=25% Similarity=0.248 Sum_probs=25.9
Q ss_pred EEEECCCCCCHHHHHHHHHHCCCC----EEHHHHCCHHHHHHHH
Q ss_conf 586013468827999999861688----1005524989999999
Q gi|254780634|r 234 QILDFCAGGGGKTLALSMLLNNKG----QIHAWDNNKSRMAPIV 273 (429)
Q Consensus 234 ~vLD~CAapGGKt~~la~~~~~~g----~i~A~D~~~~Rl~~l~ 273 (429)
..=|-|+.|||-|.+--.-+++.| .+-|++-...|...|.
T Consensus 222 ~Lkd~V~SPgG~TI~glh~LE~ggfRs~linaVeaa~~r~~el~ 265 (267)
T KOG3124 222 QLKDDVCSPGGTTIYGLHALEKGGFRSGLINAVEAATKRARELG 265 (267)
T ss_pred HHHCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHC
T ss_conf 87478889996047899998738851577999999999999863
No 365
>PRK13591 ubiA prenyltransferase; Provisional
Probab=29.77 E-value=37 Score=14.01 Aligned_cols=15 Identities=20% Similarity=0.071 Sum_probs=6.5
Q ss_pred CCHHHCHHHHHHHHH
Q ss_conf 882429998999998
Q gi|254780634|r 361 ILPEENIQQINYFLS 375 (429)
Q Consensus 361 ~~~~Ene~vv~~fL~ 375 (429)
..-+|+++.+.+-|+
T Consensus 269 ~t~~~~~~~~~rkl~ 283 (304)
T PRK13591 269 FTFPESEESISRKLE 283 (304)
T ss_pred CCCCCCCCHHHHHHE
T ss_conf 257766313665420
No 366
>TIGR01627 A_thal_3515 uncharacterized plant-specific domain TIGR01627; InterPro: IPR006514 These sequences contain an uncharacterised domain found in both Arabidopsis thaliana (at least 10 copies) and Oryza sativa. Most member proteins have only a short stretch of sequence N-terminal to this domain, but one has a long N-terminal extension that includes a protein kinase domain (IPR000719 from INTERPRO). .
Probab=29.60 E-value=29 Score=14.71 Aligned_cols=10 Identities=30% Similarity=0.843 Sum_probs=5.3
Q ss_pred CCCEEEECCC
Q ss_conf 2467896275
Q gi|254780634|r 299 HFTTVLVDAP 308 (429)
Q Consensus 299 ~fd~vl~DaP 308 (429)
++|.|+||+|
T Consensus 147 kWDvI~VDgP 156 (238)
T TIGR01627 147 KWDVIVVDGP 156 (238)
T ss_pred CCCEEEEECC
T ss_conf 5427886188
No 367
>pfam05971 Methyltransf_10 Protein of unknown function (DUF890). This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of this family is unknown.
Probab=29.60 E-value=37 Score=13.99 Aligned_cols=145 Identities=14% Similarity=0.144 Sum_probs=94.5
Q ss_pred CCCCEEEECCCCCCHHHHHHHHHHCCCCEEHHHHCCHHHHHHHHHHHHHC-CCC-CCEEEE--CCC-CC---CCCCCCCC
Q ss_conf 66625860134688279999998616881005524989999999998750-288-608821--554-34---45723246
Q gi|254780634|r 230 TNSSQILDFCAGGGGKTLALSMLLNNKGQIHAWDNNKSRMAPIVARIKRA-GIH-NVQLHS--SWE-SL---RNLQEHFT 301 (429)
Q Consensus 230 ~~g~~vLD~CAapGGKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~-g~~-~v~~~~--~~~-~~---~~~~~~fd 301 (429)
..+-++||.+.|.-.==-.|+..+.+ =+.+|.|+++.=++..++|+++- ++. .|++.. ... .. ....+.||
T Consensus 64 ~~~v~gLDIGtGAscIYPLLg~~~y~-W~fvgtDId~~sl~~A~~nv~~N~~L~~~I~l~~q~~~~~if~gii~~~e~fd 142 (254)
T pfam05971 64 PTLRRALDIGTGANCIYPLLGVTEYG-WRFVGSEVDPQSLNSAKAIVEANPNLSDAIELRRQPQSTLIFNGLIGENERYD 142 (254)
T ss_pred CCCCEEEEECCCHHHHHHHHCCCCCC-CEEEEEECCHHHHHHHHHHHHHCCCCHHCEEEEECCCCCCCCCCCCCCCCCEE
T ss_conf 77746777336641577754040048-63797627989999999999858332311699963781102234468766066
Q ss_pred EEEECCCCCCC------HHHHHHHHHHHHCCHHH-------------HHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCC
Q ss_conf 78962754450------44444223667249678-------------999999878999999996089838999775888
Q gi|254780634|r 302 TVLVDAPCSGT------GTWRRRPDIKWRLSQKN-------------LIERTEEQKKILEESAQFVRPEGYLVYITCSIL 362 (429)
Q Consensus 302 ~vl~DaPCSg~------G~~rr~Pe~~w~~~~~~-------------~~~~~~lQ~~iL~~a~~~lk~gG~lvYsTCS~~ 362 (429)
..+|-+|==.+ |+-|+ ++..+.. --|..-++ .|++++..+-+ .+..=||=+-
T Consensus 143 ftmCNPPF~~S~~ea~~~~~rk-----~~~~~p~~~f~G~~~El~~~GGE~~Fi~-rMI~ES~~~~~---~v~WfTsmvg 213 (254)
T pfam05971 143 FTLCNPPFHASLAEAKGGSSRK-----PGRPPPSLNFGGQIAELWCEGGEAAFIK-KMIEESLQFAK---QVRWFTTLVS 213 (254)
T ss_pred EEECCCCCCCCHHHHHHHHHCC-----CCCCCCCCCCCCCCCEEEECCCHHHHHH-HHHHHHHHHCC---CCEEECCCCC
T ss_conf 6303798667888887776446-----6789973035675306674684599999-99999998644---7579831366
Q ss_pred HHHCHHHHHHHHHHCC--CCEEEE
Q ss_conf 2429998999998579--979941
Q gi|254780634|r 363 PEENIQQINYFLSKNP--HFSIDS 384 (429)
Q Consensus 363 ~~Ene~vv~~fL~~~~--~~~~~~ 384 (429)
+.+|-.-+...|++.. ++.+.+
T Consensus 214 Kks~l~~l~~~L~~~~~~~~~~~e 237 (254)
T pfam05971 214 KGCNLPPLKEELRILGAPKVTVTE 237 (254)
T ss_pred CCCCHHHHHHHHHHCCCCEEEEEE
T ss_conf 621499999999976997799998
No 368
>PRK11145 pflA pyruvate formate lyase-activating enzyme 1; Provisional
Probab=29.54 E-value=37 Score=13.99 Aligned_cols=105 Identities=13% Similarity=0.193 Sum_probs=60.0
Q ss_pred CCHHHHHHHHHHHHHCCCCCCEEEECCCC------CCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHH
Q ss_conf 49899999999987502886088215543------445723246789627544504444422366724967899999987
Q gi|254780634|r 264 NNKSRMAPIVARIKRAGIHNVQLHSSWES------LRNLQEHFTTVLVDAPCSGTGTWRRRPDIKWRLSQKNLIERTEEQ 337 (429)
Q Consensus 264 ~~~~Rl~~l~~~~~r~g~~~v~~~~~~~~------~~~~~~~fd~vl~DaPCSg~G~~rr~Pe~~w~~~~~~~~~~~~lQ 337 (429)
+...=+..+-+.+++.|++.+ +.+.... ....-...|.|++|. | ..+++.-.++....
T Consensus 83 lq~ef~~~l~~~~k~~gi~ta-idTnG~~~~~~~~~~~ll~~~D~vl~Di--------------K-~~d~~~h~~~tG~~ 146 (246)
T PRK11145 83 LQAEFVRDWFRACKKEGIHTC-LDTNGFVRRYDPVIDELLDVTDLVMLDL--------------K-QMNDEIHQNLVGVS 146 (246)
T ss_pred CCHHHHHHHHHHHHHCCCCEE-EECCCCCCCCHHHHHHHHHHCCEEEECC--------------C-CCCHHHHHHHHCCC
T ss_conf 689999999999988799899-9899998755799999886323457646--------------6-68989999998889
Q ss_pred HHHHHHHHHHHCCCCEEEEEECCCCH-----HHCHHHHHHHHHHCCCCEEEE
Q ss_conf 89999999960898389997758882-----429998999998579979941
Q gi|254780634|r 338 KKILEESAQFVRPEGYLVYITCSILP-----EENIQQINYFLSKNPHFSIDS 384 (429)
Q Consensus 338 ~~iL~~a~~~lk~gG~lvYsTCS~~~-----~Ene~vv~~fL~~~~~~~~~~ 384 (429)
.+...+..+.+..-|.-+..+.-+-| +||-+.+..|++..++..-++
T Consensus 147 n~~iL~nl~~l~~~~~~~~iR~pvIPg~nD~~e~i~~~a~fl~~l~~v~~v~ 198 (246)
T PRK11145 147 NHRTLEFARYLAKRNQKTWIRYVVVPGWTDDDDSAHRLGEFIKDMGNIEKVE 198 (246)
T ss_pred CHHHHHHHHHHHHCCCCEEEEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEE
T ss_conf 1899999999997899789988677998899999999999999769976366
No 369
>TIGR01974 NDH_I_L proton-translocating NADH-quinone oxidoreductase, chain L; InterPro: IPR003945 NADH-plastoquinone oxidoreductase chain 5 is part of the NADH-ubiquinone oxidoreductase (complex I), which catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane : NADH + ubiquinone = NAD(+) + ubiquinol ; GO: 0008137 NADH dehydrogenase (ubiquinone) activity, 0042773 ATP synthesis coupled electron transport.
Probab=29.47 E-value=8.9 Score=18.21 Aligned_cols=41 Identities=17% Similarity=0.106 Sum_probs=20.7
Q ss_pred CCCHHHHHHHHHHHCCCCCHHHHH-------HHHHHHHHHHHHHHHHHH
Q ss_conf 997899999999868588955799-------999999999975899999
Q gi|254780634|r 21 KKPITNSLKDWGMSHRFAGSSDRA-------SISNIVHDVLRKYLSSAY 62 (429)
Q Consensus 21 ~~~ad~~L~~~~~~~r~lgs~DR~-------~i~~lvyg~lR~~~~ld~ 62 (429)
||.|+--|..|+-+- ..||.-=+ .+|.=||=+.|--..++.
T Consensus 238 GKSAQlpLHtWLpDA-MeGPTPVSALIHAATMVTAGVyLvaR~spLF~l 285 (691)
T TIGR01974 238 GKSAQLPLHTWLPDA-MEGPTPVSALIHAATMVTAGVYLVARTSPLFEL 285 (691)
T ss_pred HHHHHHHHHCCCCCC-CCCCCCHHHHHHHHHHHHHHHHHHHHHCHHHHH
T ss_conf 775200100246346-798782017776447767889999973403434
No 370
>PRK11517 transcriptional regulatory protein YedW; Provisional
Probab=29.36 E-value=36 Score=14.11 Aligned_cols=11 Identities=9% Similarity=0.033 Sum_probs=3.9
Q ss_pred CCCHHHHHHHH
Q ss_conf 89989999989
Q gi|254780634|r 163 KVNRCKLFKNL 173 (429)
Q Consensus 163 k~~~~~~~~~L 173 (429)
+.+.++....|
T Consensus 80 ~~~~~d~i~~l 90 (223)
T PRK11517 80 RDSVDDRVRGL 90 (223)
T ss_pred CCCHHHHHHHH
T ss_conf 55657899999
No 371
>TIGR02767 TraG-Ti Ti-type conjugative transfer system protien TraG; InterPro: IPR014135 This entry contains the Agrobacterium tumefaciens Ti-plasmid TraG, it is responsible for conjugative transfer of the entire plasmid among Agrobacterium strains . The protein is distantly related to the F-type conjugation system TraG protein. Both of these systems are examples of type IV secretion systems..
Probab=29.28 E-value=22 Score=15.50 Aligned_cols=102 Identities=22% Similarity=0.277 Sum_probs=59.8
Q ss_pred CCCCCCH-HHHHH--HHHHCCCCEEHHHHCCHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCCEEEEC-CCCCCCH
Q ss_conf 1346882-79999--998616881005524989999999998750288608821554344572324678962-7544504
Q gi|254780634|r 238 FCAGGGG-KTLAL--SMLLNNKGQIHAWDNNKSRMAPIVARIKRAGIHNVQLHSSWESLRNLQEHFTTVLVD-APCSGTG 313 (429)
Q Consensus 238 ~CAapGG-Kt~~l--a~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~~~~~~~~~~~fd~vl~D-aPCSg~G 313 (429)
..||.|| ||+-. =.-+.-.|.|++.|+|..=.=...+.=+..|-.+|.+-++......--..-|.|.=| +|
T Consensus 225 fFAGSGGfKTTS~vvPTaL~y~Gplv~LDPStEvAPMV~~hRr~~g~R~ViVLDP~~~~~kgFNvLDwi~~~~vP----- 299 (641)
T TIGR02767 225 FFAGSGGFKTTSVVVPTALKYGGPLVCLDPSTEVAPMVVEHRRKAGDRKVIVLDPAAGVVKGFNVLDWIERDGVP----- 299 (641)
T ss_pred EEECCCCEEECCCCCCCCCCCCCCEEEECCCCCCCCHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCCCCC-----
T ss_conf 870787811046423654027878798688766440068998741496489976888874664000141237886-----
Q ss_pred HHHHHHHH----HHHCC-----HHHHHHHHHHHH-HHHHHH
Q ss_conf 44442236----67249-----678999999878-999999
Q gi|254780634|r 314 TWRRRPDI----KWRLS-----QKNLIERTEEQK-KILEES 344 (429)
Q Consensus 314 ~~rr~Pe~----~w~~~-----~~~~~~~~~lQ~-~iL~~a 344 (429)
...|.-|| +|-+| +..-.++-..|. +||..-
T Consensus 300 r~~kEedIVg~a~~lltd~~r~ess~~~yF~~~A~~LLTaL 340 (641)
T TIGR02767 300 RLKKEEDIVGVAKLLLTDKVRTESSRDDYFRAQAHNLLTAL 340 (641)
T ss_pred CCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 55414679999988852775545653115788899999988
No 372
>smart00448 REC cheY-homologous receiver domain. CheY regulates the clockwise rotation of E. coli flagellar motors. This domain contains a phosphoacceptor site that is phosphorylated by histidine kinase homologues.
Probab=29.01 E-value=33 Score=14.35 Aligned_cols=52 Identities=19% Similarity=0.153 Sum_probs=31.2
Q ss_pred EEHHHHCCHHHHHHHHHHHHHCCCCCCEEEECCCCCCC-CCCCCCEEEECCCC
Q ss_conf 10055249899999999987502886088215543445-72324678962754
Q gi|254780634|r 258 QIHAWDNNKSRMAPIVARIKRAGIHNVQLHSSWESLRN-LQEHFTTVLVDAPC 309 (429)
Q Consensus 258 ~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~~~~~~~-~~~~fd~vl~DaPC 309 (429)
+|..+|-++.-...++.-+++.|.....+.++...... ....||.|++|...
T Consensus 2 kVLivdD~~~~~~~l~~~l~~~g~~v~~~~~g~~~~~~~~~~~~dlil~D~~m 54 (55)
T smart00448 2 RILVVDDDPLLRELLKALLEREGYEVDEATDGEEALELLKEEKPDLILLDIMM 54 (55)
T ss_pred EEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHCCCCCEEEEECCC
T ss_conf 89999379999999999999789999998899999999974999999996768
No 373
>KOG1645 consensus
Probab=28.83 E-value=28 Score=14.79 Aligned_cols=15 Identities=33% Similarity=0.594 Sum_probs=9.6
Q ss_pred CCCCCCEEEEEEEEE
Q ss_conf 479862158999962
Q gi|254780634|r 413 FLTNTDGFFFCRLKR 427 (429)
Q Consensus 413 ~~~~~dGff~a~l~k 427 (429)
..++-|||+++.-|+
T Consensus 364 ~~d~~dG~pVc~~r~ 378 (463)
T KOG1645 364 RIDFRDGFPVCGKRR 378 (463)
T ss_pred EECCCCCCEEEEECC
T ss_conf 002666745653314
No 374
>PRK08862 short chain dehydrogenase; Provisional
Probab=28.70 E-value=38 Score=13.89 Aligned_cols=53 Identities=19% Similarity=0.144 Sum_probs=35.0
Q ss_pred CCEEEECCCCCC-HHHHHHHHHHC-CCCEEHHHHCCHHHHHHHHHHHHHCCCCCCEE
Q ss_conf 625860134688-27999999861-68810055249899999999987502886088
Q gi|254780634|r 232 SSQILDFCAGGG-GKTLALSMLLN-NKGQIHAWDNNKSRMAPIVARIKRAGIHNVQL 286 (429)
Q Consensus 232 g~~vLD~CAapG-GKt~~la~~~~-~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~ 286 (429)
|..||=.-|+.| |++ +|..+. ....|+.+|.++.+++.+.+.+...|-....+
T Consensus 5 ~Kv~lITGas~GIG~a--iA~~~A~~Ga~Vii~~r~~~~l~~~~~~i~~~g~~~~~~ 59 (227)
T PRK08862 5 NSIILITSAGSVLGRT--ISCHFARLGATLILCDQDQSALNDTYEQCSALTDNVYSY 59 (227)
T ss_pred CCEEEEECCCCHHHHH--HHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCCEEEE
T ss_conf 9999997988799999--999999879999999699999999999999758974899
No 375
>PRK04554 consensus
Probab=28.63 E-value=38 Score=13.88 Aligned_cols=56 Identities=13% Similarity=0.048 Sum_probs=27.5
Q ss_pred CCHHHHHHHHHHHHHCCCCCCEEEECCC---------CCCCCCCCCCEEEECCCCCCCHHHHHHHH
Q ss_conf 4989999999998750288608821554---------34457232467896275445044444223
Q gi|254780634|r 264 NNKSRMAPIVARIKRAGIHNVQLHSSWE---------SLRNLQEHFTTVLVDAPCSGTGTWRRRPD 320 (429)
Q Consensus 264 ~~~~Rl~~l~~~~~r~g~~~v~~~~~~~---------~~~~~~~~fd~vl~DaPCSg~G~~rr~Pe 320 (429)
++....++.+.-++++|..-..+..... .....+ .-+.||+|==||.-||+-+--+
T Consensus 172 PD~G~~~ra~~~A~~L~~~~a~~~K~R~~~~~~~~~~~vgdV~-Gk~~IIVDDiIdTGgTl~~aa~ 236 (327)
T PRK04554 172 PDIGGVVRARAVAKSLNADLAIIDKRRPKANVAEVMNIIGDIQ-GRTCLIVDDMIDTANTLCKAAV 236 (327)
T ss_pred CCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEECCCCCCC-CCEEEECCCCCCCHHHHHHHHH
T ss_conf 7953899999999756887799996448998226512556412-2236720432135067999999
No 376
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=28.63 E-value=26 Score=15.07 Aligned_cols=30 Identities=20% Similarity=0.258 Sum_probs=16.0
Q ss_pred CCCCC-HHHHHHHHHHC---CC---CEEHHHHCCHHH
Q ss_conf 34688-27999999861---68---810055249899
Q gi|254780634|r 239 CAGGG-GKTLALSMLLN---NK---GQIHAWDNNKSR 268 (429)
Q Consensus 239 CAapG-GKt~~la~~~~---~~---g~i~A~D~~~~R 268 (429)
+-.|| |||+.+.++.. .+ --|+|+|++..+
T Consensus 5 tG~pGaGKStLi~~l~~~~~~~g~~VaVlavDPsS~~ 41 (148)
T cd03114 5 TGVPGAGKSTLIDALITALRARGKRVAVLAIDPSSPF 41 (148)
T ss_pred CCCCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCCC
T ss_conf 5899787899999999999978983799996888786
No 377
>PRK09836 DNA-binding transcriptional activator CusR; Provisional
Probab=28.47 E-value=38 Score=13.91 Aligned_cols=10 Identities=20% Similarity=-0.067 Sum_probs=3.3
Q ss_pred CCHHHHHHHH
Q ss_conf 9989999989
Q gi|254780634|r 164 VNRCKLFKNL 173 (429)
Q Consensus 164 ~~~~~~~~~L 173 (429)
.+.++....|
T Consensus 82 ~~~~d~i~~l 91 (226)
T PRK09836 82 GTIEHRVKGL 91 (226)
T ss_pred CCHHHHHHHH
T ss_conf 8988999999
No 378
>pfam02254 TrkA_N TrkA-N domain. This domain is found in a wide variety of proteins. These protein include potassium channels, phosphoesterases, and various other transporters. This domain binds to NAD.
Probab=28.41 E-value=39 Score=13.86 Aligned_cols=63 Identities=21% Similarity=0.228 Sum_probs=36.9
Q ss_pred CCCHHHHHHHHHHCCCCEEHHHHCCHHHHHHHHHHHHHCCCCCCEEEECC-CCCCCC-CCCCCEEEECC
Q ss_conf 68827999999861688100552498999999999875028860882155-434457-23246789627
Q gi|254780634|r 241 GGGGKTLALSMLLNNKGQIHAWDNNKSRMAPIVARIKRAGIHNVQLHSSW-ESLRNL-QEHFTTVLVDA 307 (429)
Q Consensus 241 apGGKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~~-~~~~~~-~~~fd~vl~Da 307 (429)
|-|--...+++.+...|.+++.|.++.+++.+++ .|...+.-...+ ..+... -..+|.|++..
T Consensus 5 G~g~~G~~la~~L~~~~~v~vId~d~~~~~~~~~----~~~~vi~GD~~~~~~L~~a~i~~a~~vi~~~ 69 (115)
T pfam02254 5 GYGRVGRSLAEELREGGPVVVIDKDPERVEELRE----EGVPVVVGDATDEEVLEEAGIEDADAVVAAT 69 (115)
T ss_pred CCCHHHHHHHHHHHHCCCEEEEECCHHHHHHHHH----CCCEEEEEECCCHHHHHHHCCCCCCEEEEEC
T ss_conf 7888999999999808999999998799877886----6986999956886678761920287999962
No 379
>TIGR00421 ubiX_pad polyprenyl P-hydroxybenzoate and phenylacrylic acid decarboxylases; InterPro: IPR004507 This family contains flavoproteins, which are aromatic acid decarboxylases. An example is the Saccharomyces cerevisiae gene, PAD1 that encodes phenylacrylic acid decarboxylase. Mutations of this gene are viable and confer resistance to cinnamic acid. ; GO: 0016831 carboxy-lyase activity.
Probab=28.03 E-value=39 Score=13.81 Aligned_cols=10 Identities=50% Similarity=1.135 Sum_probs=3.5
Q ss_pred CCEEEECCCCC
Q ss_conf 46789627544
Q gi|254780634|r 300 FTTVLVDAPCS 310 (429)
Q Consensus 300 fd~vl~DaPCS 310 (429)
||.+.| ||||
T Consensus 76 ~Dgm~V-vPCS 85 (181)
T TIGR00421 76 FDGMVV-VPCS 85 (181)
T ss_pred CCCEEE-ECCC
T ss_conf 682688-6485
No 380
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=27.81 E-value=39 Score=13.82 Aligned_cols=16 Identities=6% Similarity=-0.176 Sum_probs=9.1
Q ss_pred CHHHCHHHHHHHHHHC
Q ss_conf 8242999899999857
Q gi|254780634|r 362 LPEENIQQINYFLSKN 377 (429)
Q Consensus 362 ~~~Ene~vv~~fL~~~ 377 (429)
|-.|=+++|++++--.
T Consensus 359 NVREL~N~ver~~il~ 374 (464)
T COG2204 359 NVRELENVVERAVILS 374 (464)
T ss_pred HHHHHHHHHHHHHHCC
T ss_conf 8999999999998517
No 381
>TIGR01968 minD_bact septum site-determining protein MinD; InterPro: IPR010223 This entry describes the bacterial and chloroplast form of MinD, a multifunctional cell division protein that guides correct placement of the septum. In Escherichia coli, the cell division site is determined by the cooperative activity of min operon products MinC, MinD, and MinE . MinD is a membrane-associated ATPase and is a septum site-determining factor through the activation and regulation of MinC and MinE. MinD is also known to undergo a rapid pole-to-pole oscillation movement in vivo as observed by fluorescent microscopy. In plants, chloroplast division requires the dimerisation of stromal MinD . The homologous archaeal MinD proteins, with many archaeal genomes having two or more forms, are described by a separate model.; GO: 0016887 ATPase activity, 0000918 selection of site for barrier septum formation.
Probab=27.63 E-value=29 Score=14.75 Aligned_cols=45 Identities=13% Similarity=0.175 Sum_probs=19.6
Q ss_pred EEEECCCCCCCCCCCCCCC-----------CCE-EEECCCCCCHHHH-HHHHHHCCCC
Q ss_conf 8984155654211236666-----------625-8601346882799-9999861688
Q gi|254780634|r 213 FEIQDEGSQIVSNLTAITN-----------SSQ-ILDFCAGGGGKTL-ALSMLLNNKG 257 (429)
Q Consensus 213 ~~VQD~aSql~~~~l~~~~-----------g~~-vLD~CAapGGKt~-~la~~~~~~g 257 (429)
.+|.|.--.|...+++.-| |+. |||-==.--||++ .+|.+..|+.
T Consensus 193 lsi~Dv~~~L~i~LiGviPeD~~iI~stN~GEP~vl~~~L~~~g~Af~~~ArRi~G~~ 250 (272)
T TIGR01968 193 LSIDDVLEILSIPLIGVIPEDEEIIVSTNKGEPVVLNKKLSRAGKAFENIARRILGEE 250 (272)
T ss_pred CCHHHHHHHCCCCCEEEECCCCCEEEEECCCEEEEECCCCCHHHHHHHHHHHHHCCCC
T ss_conf 2789999860886168632998657664561435446002616788999987534886
No 382
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=27.48 E-value=40 Score=13.75 Aligned_cols=56 Identities=23% Similarity=0.278 Sum_probs=31.8
Q ss_pred HHHCCHHHHHHHHHHHHHC----CCCCCEEEECCCCCCCCCCCCCEEEECCCCC---CCHHHHHHHHHHHHCCHHHHHHH
Q ss_conf 5524989999999998750----2886088215543445723246789627544---50444442236672496789999
Q gi|254780634|r 261 AWDNNKSRMAPIVARIKRA----GIHNVQLHSSWESLRNLQEHFTTVLVDAPCS---GTGTWRRRPDIKWRLSQKNLIER 333 (429)
Q Consensus 261 A~D~~~~Rl~~l~~~~~r~----g~~~v~~~~~~~~~~~~~~~fd~vl~DaPCS---g~G~~rr~Pe~~w~~~~~~~~~~ 333 (429)
.+|-++.|.+.++..+... |..++ .. .|+| |..++.+.+...|...|.-++.|
T Consensus 142 ~v~~~e~~f~~i~~~~~~~l~~~~~~~~----------------~~----IPiSa~~GdNi~~~s~~~~WY~G~tLle~L 201 (208)
T cd04166 142 LVDYSEEVFEEIVADYLAFAAKLGIEDI----------------TF----IPISALDGDNVVSRSENMPWYSGPTLLEHL 201 (208)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHCCCCCC----------------EE----EEEECCCCCCCCCCCCCCCCCCCCHHHHHH
T ss_conf 6899989999999999999997499887----------------19----981267788878699999898883499998
Q ss_pred HHH
Q ss_conf 998
Q gi|254780634|r 334 TEE 336 (429)
Q Consensus 334 ~~l 336 (429)
-.+
T Consensus 202 d~~ 204 (208)
T cd04166 202 ETV 204 (208)
T ss_pred HCC
T ss_conf 477
No 383
>pfam06725 3D 3D domain. This short presumed domain contains three conserved aspartate residues, hence the name 3D. It has been shown to be part of the catalytic double psi beta barrel domain of MltA.
Probab=27.43 E-value=40 Score=13.74 Aligned_cols=44 Identities=23% Similarity=0.253 Sum_probs=35.8
Q ss_pred CCCEEEEECCCCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHCCCCEEHH
Q ss_conf 26548984155654211236666625860134688279999998616881005
Q gi|254780634|r 209 QRGWFEIQDEGSQIVSNLTAITNSSQILDFCAGGGGKTLALSMLLNNKGQIHA 261 (429)
Q Consensus 209 ~~G~~~VQD~aSql~~~~l~~~~g~~vLD~CAapGGKt~~la~~~~~~g~i~A 261 (429)
..+++..||.+|.+ .| .=.|++.|.|-++-.+|..|..+|+++-
T Consensus 29 ~~~l~~aqDtGgAI--------kG-~R~Dlf~G~G~~A~~~Ag~~~~~g~~~~ 72 (74)
T pfam06725 29 VNRLAIAQDTGGAI--------KG-NRIDLFFGTGDEAGALAGWGRKTGRVYI 72 (74)
T ss_pred CEEEEEEEECCCCC--------CC-CEEEEEECCHHHHHHHHHHCCEEEEEEE
T ss_conf 11599997431101--------67-5789962776999998721741589999
No 384
>pfam08123 DOT1 Histone methylation protein DOT1. The DOT1 domain regulates gene expression by methylating histone H3. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast.
Probab=27.31 E-value=40 Score=13.73 Aligned_cols=81 Identities=12% Similarity=0.080 Sum_probs=53.2
Q ss_pred CCCCCCCCCEEEECCCCCCHHHHHHHHHHCCCCEEHHHHCCH-------HHHHHHHHHHHHCCCC--CCEEEECCCCCCC
Q ss_conf 123666662586013468827999999861688100552498-------9999999998750288--6088215543445
Q gi|254780634|r 225 NLTAITNSSQILDFCAGGGGKTLALSMLLNNKGQIHAWDNNK-------SRMAPIVARIKRAGIH--NVQLHSSWESLRN 295 (429)
Q Consensus 225 ~~l~~~~g~~vLD~CAapGGKt~~la~~~~~~g~i~A~D~~~-------~Rl~~l~~~~~r~g~~--~v~~~~~~~~~~~ 295 (429)
..++..+++.-+|+.+|=|-=.+|.|...+.+ ..+-+|+.+ .-.+.++.+++..|.+ .+++...|.....
T Consensus 36 ~~~~l~~~dvF~DLGSGVGnvv~QaAl~tgc~-~s~GiEi~~~~a~~A~~~~~~~~~~~~~~G~~~~~~~l~~gdFl~~~ 114 (205)
T pfam08123 36 DKCNLGPQDVFVDLGSGVGNCVLQAALEFGCK-LSFGCEIMDNASNLAELQDEEFKKRCKLFGKKLGKIEFIRGSFLDNE 114 (205)
T ss_pred HHHCCCCCCEEEECCCCCCHHHHHHHHHHCCC-EEEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCH
T ss_conf 98398976889985888329999999870965-38888865668999999999999999995887687389977778858
Q ss_pred C----CCCCCEEEEC
Q ss_conf 7----2324678962
Q gi|254780634|r 296 L----QEHFTTVLVD 306 (429)
Q Consensus 296 ~----~~~fd~vl~D 306 (429)
. -...|.||+.
T Consensus 115 ~~~~~~~~a~VI~vN 129 (205)
T pfam08123 115 RVEEIIPEADVILVN 129 (205)
T ss_pred HHHHHHCCCCEEEEE
T ss_conf 899863479889994
No 385
>TIGR02250 FCP1_euk FCP1-like phosphatase, phosphatase domain; InterPro: IPR011947 This entry represents the phosphatase domain of the human RNA polymerase II subunit A C-terminal domain phosphatase (FCP1, ) and closely related phosphatases from eukaryotes including plants, fungi and slime mold. This domain is a member of the haloacid dehalogenase (HAD) superfamily by virtue of a conserved set of three catalytic motifs and a conserved fold as predicted by PSIPRED. The third motif in this family is distinctive (hhhhDDppphW). This domain is classified as a "Class III" HAD, since there is no large "cap" domain found between motifs 1 and 2 or motifs 2 and 3 . This domain is related to domains found in the human NLI interacting factor-like phosphatases. ; GO: 0004721 phosphoprotein phosphatase activity, 0005634 nucleus.
Probab=26.99 E-value=22 Score=15.49 Aligned_cols=46 Identities=17% Similarity=0.233 Sum_probs=34.1
Q ss_pred CCCCCCCCCCCC---CCEEE--ECCCCCCHHHHHHHHHHC--CCCEEHHHHCC
Q ss_conf 654211236666---62586--013468827999999861--68810055249
Q gi|254780634|r 220 SQIVSNLTAITN---SSQIL--DFCAGGGGKTLALSMLLN--NKGQIHAWDNN 265 (429)
Q Consensus 220 Sql~~~~l~~~~---g~~vL--D~CAapGGKt~~la~~~~--~~g~i~A~D~~ 265 (429)
|+.++.++||+. |+||| |=|..|..||--|..+++ ++--|+-+|-.
T Consensus 98 A~~iakliDP~~~yFg~RiiSRdE~~~~~~K~~nL~~Lfpw~d~~~VVIiDDr 150 (170)
T TIGR02250 98 AQAIAKLIDPDGKYFGDRIISRDESGSPHTKSKNLLRLFPWADESMVVIIDDR 150 (170)
T ss_pred HHHHHHHCCCCCCCCCCCEEECCCCCCCCCCHHHHHHHCCCCCCEEEEEECCC
T ss_conf 99999860887221488205415789876260227753330177128998186
No 386
>PRK06853 indolepyruvate oxidoreductase subunit B; Reviewed
Probab=26.70 E-value=41 Score=13.66 Aligned_cols=42 Identities=17% Similarity=0.186 Sum_probs=27.8
Q ss_pred HHHHCCCCEEEEEECCCCH----------HHCHHHHHHHHHHCCCCEEEECC
Q ss_conf 9960898389997758882----------42999899999857997994143
Q gi|254780634|r 345 AQFVRPEGYLVYITCSILP----------EENIQQINYFLSKNPHFSIDSII 386 (429)
Q Consensus 345 ~~~lk~gG~lvYsTCS~~~----------~Ene~vv~~fL~~~~~~~~~~~~ 386 (429)
.+.++|||++|+.|..+.| .+++++.+.+-.....+..+|..
T Consensus 84 ~~~l~~~~~~ivn~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~a~ 135 (197)
T PRK06853 84 LPYLKPGGKVVVNTQPIVPVPVLTGLAKYPEVEDILAELRELGIKVILVDAE 135 (197)
T ss_pred HHCCCCCEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEECHH
T ss_conf 6315888599997887677532247444787689999998537959997389
No 387
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=26.67 E-value=42 Score=13.65 Aligned_cols=30 Identities=13% Similarity=-0.004 Sum_probs=13.8
Q ss_pred HHHHHHHHHCCCCEEEEEECCCCHHHCHHH
Q ss_conf 999999960898389997758882429998
Q gi|254780634|r 340 ILEESAQFVRPEGYLVYITCSILPEENIQQ 369 (429)
Q Consensus 340 iL~~a~~~lk~gG~lvYsTCS~~~~Ene~v 369 (429)
+-+-|--+...|-..+-|.-|...++-+.+
T Consensus 504 ~~eva~l~~~aG~i~i~a~iSp~~~~R~~~ 533 (613)
T PRK05506 504 VAEVARLMADAGLIVLVSFISPFREERELA 533 (613)
T ss_pred HHHHHHHHHHCCCEEEEECCCCCHHHHHHH
T ss_conf 999999998689889997588998999999
No 388
>PRK07890 short chain dehydrogenase; Provisional
Probab=26.56 E-value=42 Score=13.64 Aligned_cols=26 Identities=12% Similarity=0.217 Sum_probs=15.2
Q ss_pred CEEHHHHCCHHHHHHHHHHHHHCCCC
Q ss_conf 81005524989999999998750288
Q gi|254780634|r 257 GQIHAWDNNKSRMAPIVARIKRAGIH 282 (429)
Q Consensus 257 g~i~A~D~~~~Rl~~l~~~~~r~g~~ 282 (429)
..|+.+|.+..+++.+.+.+...|..
T Consensus 30 a~V~i~~r~~~~l~~~~~~i~~~g~~ 55 (258)
T PRK07890 30 ADVVLAARTAERLDEVAKQIDDLGRR 55 (258)
T ss_pred CEEEEEECCHHHHHHHHHHHHHCCCC
T ss_conf 98999979899999999999964995
No 389
>PRK06198 short chain dehydrogenase; Provisional
Probab=26.13 E-value=42 Score=13.59 Aligned_cols=22 Identities=9% Similarity=0.141 Sum_probs=8.4
Q ss_pred EHHHHCCHHHHHHHHHHHHHCC
Q ss_conf 0055249899999999987502
Q gi|254780634|r 259 IHAWDNNKSRMAPIVARIKRAG 280 (429)
Q Consensus 259 i~A~D~~~~Rl~~l~~~~~r~g 280 (429)
|+.++.+..+++.+.+.++..|
T Consensus 34 v~~~~~~~~~~~~~~~~~~~~g 55 (268)
T PRK06198 34 LVICGRSAEKGEAKAAELEALG 55 (268)
T ss_pred EEEECCCHHHHHHHHHHHHHCC
T ss_conf 9996298889999999999549
No 390
>PRK07535 methyltetrahydrofolate:corrinoid/iron-sulfur protein methyltransferase; Validated
Probab=26.09 E-value=43 Score=13.58 Aligned_cols=17 Identities=24% Similarity=0.345 Sum_probs=9.9
Q ss_pred CCCCCEEEECCCCCCHH
Q ss_conf 66662586013468827
Q gi|254780634|r 229 ITNSSQILDFCAGGGGK 245 (429)
Q Consensus 229 ~~~g~~vLD~CAapGGK 245 (429)
.+.|..+||+|+|+.+.
T Consensus 35 ~eaGA~~LDVN~g~~~~ 51 (268)
T PRK07535 35 VEAGANYLDVNAGTAVE 51 (268)
T ss_pred HHCCCCEEEEECCCCCC
T ss_conf 98499989960898774
No 391
>TIGR00274 TIGR00274 glucokinase regulator homolog; InterPro: IPR005488 The glucokinase regulatory protein (GCKR) is a vertebrate protein that inhibits glucokinase by forming an inactive complex with the enzyme. It is a protein of about 70 Kd which seems to be evolutionary related to a number of uncharacterised bacterial proteins which are about half the size of GCKR..
Probab=25.99 E-value=43 Score=13.57 Aligned_cols=45 Identities=20% Similarity=0.259 Sum_probs=20.5
Q ss_pred HHHHHHHHHCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999569978999999998685889557999999999999758999997
Q gi|254780634|r 11 IEILKDIRTHKKPITNSLKDWGMSHRFAGSSDRASISNIVHDVLRKYLSSAYI 63 (429)
Q Consensus 11 ~eiL~~v~~~~~~ad~~L~~~~~~~r~lgs~DR~~i~~lvyg~lR~~~~ld~i 63 (429)
+||++-+=+.++.-..++.+.+- |=+..-++.|..+..=++|=|+
T Consensus 19 Le~~~l~N~eD~~v~~Av~~~lp--------di~~Avd~i~~~~~~GGRLiY~ 63 (291)
T TIGR00274 19 LEIVRLINEEDKLVPLAVEEVLP--------DIAAAVDVIVEAFQKGGRLIYI 63 (291)
T ss_pred HHHHHHHCCCCCHHHHHHHHHHH--------HHHHHHHHHHHHHHCCCEEEEE
T ss_conf 78999851024437999987428--------8999999999998679808987
No 392
>KOG3349 consensus
Probab=25.92 E-value=42 Score=13.59 Aligned_cols=31 Identities=35% Similarity=0.612 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCH
Q ss_conf 6789999998789999999960898389997758882
Q gi|254780634|r 327 QKNLIERTEEQKKILEESAQFVRPEGYLVYITCSILP 363 (429)
Q Consensus 327 ~~~~~~~~~lQ~~iL~~a~~~lk~gG~lvYsTCS~~~ 363 (429)
.+++..-+.+| | +..|..-|+|.|+|||=.+
T Consensus 108 Nd~LMDNHQ~E--L----A~qL~~egyL~~C~ps~L~ 138 (170)
T KOG3349 108 NDSLMDNHQLE--L----AKQLAEEGYLYYCTPSTLP 138 (170)
T ss_pred CHHHHHHHHHH--H----HHHHHHCCCEEEEECCCHH
T ss_conf 75764448999--9----9999865968996056567
No 393
>KOG0023 consensus
Probab=25.86 E-value=43 Score=13.56 Aligned_cols=129 Identities=9% Similarity=0.087 Sum_probs=70.3
Q ss_pred CCCCCCEEEECCC-CCCHHHHHHHHHHCCCCEEHHHHCCHHHHHHHHHHHHHCCCCCCEEEE-CCCCCCCCCCCCCEEEE
Q ss_conf 6666625860134-688279999998616881005524989999999998750288608821-55434457232467896
Q gi|254780634|r 228 AITNSSQILDFCA-GGGGKTLALSMLLNNKGQIHAWDNNKSRMAPIVARIKRAGIHNVQLHS-SWESLRNLQEHFTTVLV 305 (429)
Q Consensus 228 ~~~~g~~vLD~CA-apGGKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~-~~~~~~~~~~~fd~vl~ 305 (429)
+..||++|-=.-+ |-|-=..++|-.|+ -+|++.|.+.++-+ +.++++|........ +.+......+..|.+.-
T Consensus 178 g~~pG~~vgI~GlGGLGh~aVq~AKAMG--~rV~vis~~~~kke---ea~~~LGAd~fv~~~~d~d~~~~~~~~~dg~~~ 252 (360)
T KOG0023 178 GLGPGKWVGIVGLGGLGHMAVQYAKAMG--MRVTVISTSSKKKE---EAIKSLGADVFVDSTEDPDIMKAIMKTTDGGID 252 (360)
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHC--CEEEEEECCCHHHH---HHHHHCCCCEEEEECCCHHHHHHHHHHHCCCCE
T ss_conf 9999868988557640168999998708--67999927853489---999854962158842787899999875267502
Q ss_pred CCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEE-----------------------CCCC
Q ss_conf 27544504444422366724967899999987899999999608983899977-----------------------5888
Q gi|254780634|r 306 DAPCSGTGTWRRRPDIKWRLSQKNLIERTEEQKKILEESAQFVRPEGYLVYIT-----------------------CSIL 362 (429)
Q Consensus 306 DaPCSg~G~~rr~Pe~~w~~~~~~~~~~~~lQ~~iL~~a~~~lk~gG~lvYsT-----------------------CS~~ 362 (429)
-++-= ..| =++.+..+||++|++|-.- +-=.
T Consensus 253 ~v~~~-----a~~---------------------~~~~~~~~lk~~Gt~V~vg~p~~~~~~~~~~lil~~~~I~GS~vG~ 306 (360)
T KOG0023 253 TVSNL-----AEH---------------------ALEPLLGLLKVNGTLVLVGLPEKPLKLDTFPLILGRKSIKGSIVGS 306 (360)
T ss_pred EEEEC-----CCC---------------------CHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCEECCEEEEECCCCC
T ss_conf 32102-----324---------------------4388887610397899983667765676500002437987403254
Q ss_pred HHHCHHHHHHHHHH--CCCCEEEECCC
Q ss_conf 24299989999985--79979941430
Q gi|254780634|r 363 PEENIQQINYFLSK--NPHFSIDSIID 387 (429)
Q Consensus 363 ~~Ene~vv~~fL~~--~~~~~~~~~~~ 387 (429)
..|.++.++.+-+. ++..+++++..
T Consensus 307 ~ket~E~Ldf~a~~~ik~~IE~v~~~~ 333 (360)
T KOG0023 307 RKETQEALDFVARGLIKSPIELVKLSE 333 (360)
T ss_pred HHHHHHHHHHHHCCCCCCCEEEEEHHH
T ss_conf 887999999997178867469975427
No 394
>cd01966 Nitrogenase_NifN_1 Nitrogenase_nifN1: A subgroup of the NifN subunit of the NifEN complex: NifN forms an alpha2beta2 tetramer with NifE. NifN and nifE are structurally homologous to nitrogenase MoFe protein beta and alpha subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The nifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this nifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco).
Probab=25.73 E-value=43 Score=13.54 Aligned_cols=21 Identities=10% Similarity=0.080 Sum_probs=14.2
Q ss_pred CCHHHHHHHHHHCCCCCCCCC
Q ss_conf 998999998987188754547
Q gi|254780634|r 164 VNRCKLFKNLCHYGVHHSSIS 184 (429)
Q Consensus 164 ~~~~~~~~~L~~~gi~~~~~~ 184 (429)
.+.++++..|+..|+++.-++
T Consensus 171 gDl~eik~ll~~~Gl~~~ilp 191 (417)
T cd01966 171 GDVEELKDIIEAFGLEPIILP 191 (417)
T ss_pred HHHHHHHHHHHHCCCCEEEEC
T ss_conf 779999999998299569823
No 395
>KOG4174 consensus
Probab=25.35 E-value=44 Score=13.49 Aligned_cols=102 Identities=18% Similarity=0.231 Sum_probs=63.1
Q ss_pred HHHHHCCCCCCEEEECC--CCCCCC-CCCCCEEEECCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHC-
Q ss_conf 99875028860882155--434457-23246789627544504444422366724967899999987899999999608-
Q gi|254780634|r 274 ARIKRAGIHNVQLHSSW--ESLRNL-QEHFTTVLVDAPCSGTGTWRRRPDIKWRLSQKNLIERTEEQKKILEESAQFVR- 349 (429)
Q Consensus 274 ~~~~r~g~~~v~~~~~~--~~~~~~-~~~fd~vl~DaPCSg~G~~rr~Pe~~w~~~~~~~~~~~~lQ~~iL~~a~~~lk- 349 (429)
+-++|+|.....-++.. .....+ -+.||+|+---|-||.|.- +.-| +-.+....++=+.-|+.|-.+|+
T Consensus 109 ~~Lk~lG~~I~h~Vdv~sl~~~~~~~~~~~d~IiFNFPH~G~g~~-~e~d------~~~i~~~qkL~rgFle~akemL~~ 181 (282)
T KOG4174 109 EALKRLGGTILHGVDVTSLKFHADLRLQRYDNIIFNFPHSGKGIK-FEQD------RNIIPLHQKLFRGFLESAKEMLKD 181 (282)
T ss_pred HHHHHCCCCEEECCCCEEEEECCCCCCCCCCEEEECCCCCCCCCC-CCCC------HHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999981992572013425773320134510158981787887754-2111------377899999999999999998773
Q ss_pred CCCEEEEEECCCCHHHCHHHHHHHHHHCCCCEEEE
Q ss_conf 98389997758882429998999998579979941
Q gi|254780634|r 350 PEGYLVYITCSILPEENIQQINYFLSKNPHFSIDS 384 (429)
Q Consensus 350 ~gG~lvYsTCS~~~~Ene~vv~~fL~~~~~~~~~~ 384 (429)
..|.++-.--+-.|- |..+|+ ||++..+.++..
T Consensus 182 edGeI~itlk~t~P~-~~W~ik-~Lak~~gl~L~~ 214 (282)
T KOG4174 182 EDGEIHITLKTTYPF-NPWNIK-FLAKEFGLTLLE 214 (282)
T ss_pred CCCCEEEEECCCCCC-CHHHHH-HHHHHCCCCCHH
T ss_conf 278289986057888-614266-765531520000
No 396
>TIGR00417 speE spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (), spermine synthase () and putrescine N-methyltransferase () . The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain . The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) . ; GO: 0003824 catalytic activity.
Probab=25.16 E-value=44 Score=13.47 Aligned_cols=120 Identities=18% Similarity=0.281 Sum_probs=76.2
Q ss_pred CCCC--CCCCCCCCEEEECCCCCCHHHHHHHHHHCCC--CEEHHHHCCHHHHHHHHHHHHHCC-C--CC----CEEEECC
Q ss_conf 4211--2366666258601346882799999986168--810055249899999999987502-8--86----0882155
Q gi|254780634|r 222 IVSN--LTAITNSSQILDFCAGGGGKTLALSMLLNNK--GQIHAWDNNKSRMAPIVARIKRAG-I--HN----VQLHSSW 290 (429)
Q Consensus 222 l~~~--~l~~~~g~~vLD~CAapGGKt~~la~~~~~~--g~i~A~D~~~~Rl~~l~~~~~r~g-~--~~----v~~~~~~ 290 (429)
++++ |+.-....+||=..-|=||= |-|-.+.+ -+++=+|++.+=++.-|+=|-.+. - .+ +.+.++-
T Consensus 64 Mi~HvpL~~H~NPk~VLvIGGGDGG~---lREV~KH~sVE~~~lVdID~~VI~~srkyLP~~~~g~~dderv~~~i~DG~ 140 (284)
T TIGR00417 64 MIAHVPLFAHPNPKKVLVIGGGDGGV---LREVVKHKSVEKATLVDIDEKVIELSRKYLPKLAAGSFDDERVDLAIDDGF 140 (284)
T ss_pred HHHHHHHHCCCCCCEEEEEECCCCCE---EEEEEECCCCCEEEEEECCHHHHHHHHHHCHHHHCCCCCCCEEEEEECCCH
T ss_conf 99875653689885478996388846---878875598167999972747899988826121056658880358982517
Q ss_pred CCCCCC-----CCCCCEEEECCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEE-ECCCC
Q ss_conf 434457-----2324678962754450444442236672496789999998789999999960898389997-75888
Q gi|254780634|r 291 ESLRNL-----QEHFTTVLVDAPCSGTGTWRRRPDIKWRLSQKNLIERTEEQKKILEESAQFVRPEGYLVYI-TCSIL 362 (429)
Q Consensus 291 ~~~~~~-----~~~fd~vl~DaPCSg~G~~rr~Pe~~w~~~~~~~~~~~~lQ~~iL~~a~~~lk~gG~lvYs-TCS~~ 362 (429)
..+... ..+||.|++| || +|. .|.+ .--|++--+.+.++|+|+|.+|-= +=|..
T Consensus 141 ~fl~~~Gasdv~~~fDVIIvD--st-------DPv-----GPa~----~LF~~~Fy~~~~~aL~~~Gv~v~Qss~s~~ 200 (284)
T TIGR00417 141 KFLRDTGASDVEKKFDVIIVD--ST-------DPV-----GPAE----TLFTKEFYELLKKALNEDGVIVAQSSESPW 200 (284)
T ss_pred HHHHHCCCCCCCCCCCEEEEE--CC-------CCC-----CCCC----CHHHHHHHHHHHHHCCCCCEEEEECCCCCC
T ss_conf 989761522221214479972--77-------895-----6554----102179999999852999889980278843
No 397
>pfam11523 DUF3223 Protein of unknown function (DUF3223). This family of proteins has no known function.
Probab=25.13 E-value=44 Score=13.47 Aligned_cols=49 Identities=16% Similarity=0.231 Sum_probs=28.7
Q ss_pred CCHHHCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCEEEEEE
Q ss_conf 8824299989999985799799414300222345555555567698499804479862158999
Q gi|254780634|r 361 ILPEENIQQINYFLSKNPHFSIDSIIDDWNQLYDLKNHPSLFIENGCCVLTPFLTNTDGFFFCR 424 (429)
Q Consensus 361 ~~~~Ene~vv~~fL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~dGff~a~ 424 (429)
+++++-..+++.+|..||+.+- +. +.....-..+..|+..++-.||+.+
T Consensus 14 l~~~d~~~~l~~lL~~Hp~~~~--------Ki-------G~Gi~~i~V~~h~~~~~srCf~vvR 62 (76)
T pfam11523 14 LSEEDEKTLLEALLEYHPEAEK--------KI-------GCGIDHFEVRYHPDFKKSRCFFVVR 62 (76)
T ss_pred CCHHHHHHHHHHHHHHCCCHHH--------HC-------CCCCCEEEEEECCCCCCCEEEEEEE
T ss_conf 3877899999999860995577--------52-------6885759996279988730799998
No 398
>PRK09959 hybrid sensory histidine kinase in two-component regulatory system with EvgA; Provisional
Probab=25.06 E-value=44 Score=13.46 Aligned_cols=50 Identities=12% Similarity=0.201 Sum_probs=26.5
Q ss_pred EEHHHHCCHHHHHHHHHHHHHCCCCCCEEEECCCCCCC-CCCCCCEEEECC
Q ss_conf 10055249899999999987502886088215543445-723246789627
Q gi|254780634|r 258 QIHAWDNNKSRMAPIVARIKRAGIHNVQLHSSWESLRN-LQEHFTTVLVDA 307 (429)
Q Consensus 258 ~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~~~~~~~-~~~~fd~vl~Da 307 (429)
+|..+|-++--...++.-++++|+....+.++...+.. ....||.||.|.
T Consensus 960 ~ILvVeDn~~Nr~ll~~~L~~lG~~v~~a~nG~eAl~~~~~~~fDlILmDi 1010 (1197)
T PRK09959 960 SILIADDHPTNRLLLKRQLNLLGYDVDEATDGVQALHKVSMQHYDLLITDV 1010 (1197)
T ss_pred EEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHCCCCCEEEECC
T ss_conf 799979989999999999998399999989999999997669999999879
No 399
>PRK05421 hypothetical protein; Provisional
Probab=24.97 E-value=45 Score=13.45 Aligned_cols=51 Identities=20% Similarity=0.315 Sum_probs=33.7
Q ss_pred CCCC-EEHHHHCC---HHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCCEEEE
Q ss_conf 1688-10055249---8999999999875028860882155434457232467896
Q gi|254780634|r 254 NNKG-QIHAWDNN---KSRMAPIVARIKRAGIHNVQLHSSWESLRNLQEHFTTVLV 305 (429)
Q Consensus 254 ~~~g-~i~A~D~~---~~Rl~~l~~~~~r~g~~~v~~~~~~~~~~~~~~~fd~vl~ 305 (429)
..+| .|+|.|.+ .+|+..+++-+.++|+.-|....+... ..+...-|.|+.
T Consensus 170 ~H~GPvI~AGDFNtWs~~R~~~l~~~~~~~gL~ev~f~~d~R~-~~~g~pLDhify 224 (254)
T PRK05421 170 HHSGPIILAGDFNTWSRKRMNALKRFARELGLKEVRFTDDQRR-KAFGRPLDHVFY 224 (254)
T ss_pred HCCCCEEEECCCCCCCHHHHHHHHHHHHHCCCCEEECCCCCCE-ECCCCCCCEEEE
T ss_conf 4899879844533013999999999999769808753767734-525898656998
No 400
>pfam02006 DUF137 Protein of unknown function DUF137. This family of archaeal proteins has no known function.
Probab=24.92 E-value=45 Score=13.44 Aligned_cols=37 Identities=16% Similarity=0.209 Sum_probs=16.2
Q ss_pred CHHHHHHHHHHCCCCCCCCCCCCCCCCHH---HHHHHHHHCCCC
Q ss_conf 44899999986289861112477889989---999989871887
Q gi|254780634|r 139 KDTWLKEAKSLSMRAPLDLRTNTLKVNRC---KLFKNLCHYGVH 179 (429)
Q Consensus 139 ge~~~~~l~a~~~~~pl~iRvN~~k~~~~---~~~~~L~~~gi~ 179 (429)
|++..++.+.++.+ |-||...-+.+ .+.+.|.+.|.+
T Consensus 20 ~~e~v~La~~~~a~----iEVNlFyRT~eR~~~I~~~L~~~g~~ 59 (178)
T pfam02006 20 PEEIVELAEALGAK----IEVNLFYRTEERVEKIAEVLREHGAK 59 (178)
T ss_pred HHHHHHHHHHCCCC----EEEEECCCCHHHHHHHHHHHHHCCCC
T ss_conf 49899999980998----89994348989999999999975975
No 401
>PRK05038 consensus
Probab=24.77 E-value=32 Score=14.44 Aligned_cols=22 Identities=23% Similarity=0.243 Sum_probs=16.6
Q ss_pred CCCEEEECCCCCCCHHHHHHHH
Q ss_conf 2467896275445044444223
Q gi|254780634|r 299 HFTTVLVDAPCSGTGTWRRRPD 320 (429)
Q Consensus 299 ~fd~vl~DaPCSg~G~~rr~Pe 320 (429)
.=|.|++|=-+|.-||+-+--+
T Consensus 213 Gk~~iIVDDiIdTGgTl~~aa~ 234 (315)
T PRK05038 213 GRDCILVDDMIDTGGTLCKAAE 234 (315)
T ss_pred CCEEEEECCCCCCHHHHHHHHH
T ss_conf 4137997572225158999999
No 402
>COG3911 Predicted ATPase [General function prediction only]
Probab=24.73 E-value=45 Score=13.42 Aligned_cols=28 Identities=32% Similarity=0.314 Sum_probs=15.8
Q ss_pred EEECCCCCCHHHHHHHHHHCCCCEEHHHHC
Q ss_conf 860134688279999998616881005524
Q gi|254780634|r 235 ILDFCAGGGGKTLALSMLLNNKGQIHAWDN 264 (429)
Q Consensus 235 vLD~CAapGGKt~~la~~~~~~g~i~A~D~ 264 (429)
||--|- -+|||+.|+++.. .|-.+.-+.
T Consensus 13 IltGgp-GaGKTtLL~aLa~-~Gfatvee~ 40 (183)
T COG3911 13 ILTGGP-GAGKTTLLAALAR-AGFATVEEA 40 (183)
T ss_pred EEECCC-CCCHHHHHHHHHH-CCCEEECCC
T ss_conf 983799-9768999999997-586350134
No 403
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=24.70 E-value=45 Score=13.41 Aligned_cols=158 Identities=20% Similarity=0.249 Sum_probs=76.9
Q ss_pred HHHHCCCHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 23508998899999985744899999986289861112477889989999989871887545475431134566544461
Q gi|254780634|r 121 HIQGNIPQWLQSSFQSYFKDTWLKEAKSLSMRAPLDLRTNTLKVNRCKLFKNLCHYGVHHSSISRFGLRIPATKGKSRLP 200 (429)
Q Consensus 121 ~i~~s~P~WL~~~~~~~~ge~~~~~l~a~~~~~pl~iRvN~~k~~~~~~~~~L~~~gi~~~~~~~~~~~l~~~~~~~~~~ 200 (429)
++...+|+|+.......|-+. .+++..-|-=|-+.=||=|.-.--|. .-.+ +.... |. .|....
T Consensus 241 P~~~dIP~~I~~i~~g~~~eA-~~~i~~tN~lP~icGRVCP~~~~CE~-aC~~---~~~~~---pV--aIg~LE------ 304 (654)
T PRK12769 241 PLHNHIPQWIELVKAGNIDAA-VELSHQTNTLPEITGRVCPQDRLCEG-ACTL---RDEHG---AV--TIGNIE------ 304 (654)
T ss_pred CCCCCHHHHHHHHHCCCHHHH-HHHHHHHCCCHHHHCCCCCCCCCHHH-HCCC---CCCCC---CE--EECHHH------
T ss_conf 999987999999987899999-99998768802643566899765688-6408---99989---83--766889------
Q ss_pred CHHCCHHHCCCEEEEECCCCCCCCCCCCCCCCCEEEECCCCCCHHHHH--HHHHHCCC----------CEEHHHHC----
Q ss_conf 011096312654898415565421123666662586013468827999--99986168----------81005524----
Q gi|254780634|r 201 NVMNDITFQRGWFEIQDEGSQIVSNLTAITNSSQILDFCAGGGGKTLA--LSMLLNNK----------GQIHAWDN---- 264 (429)
Q Consensus 201 ~~~~~~~f~~G~~~VQD~aSql~~~~l~~~~g~~vLD~CAapGGKt~~--la~~~~~~----------g~i~A~D~---- 264 (429)
-.....+|.+|+. .+. --....|.+|-=.-|||.|=|.. |+. ++-+ |=+...-|
T Consensus 305 RfiaD~a~~~g~~--p~~-------~~~~~tGKkVAIIGsGPAGLsaA~~Lar-~G~~VTVFE~~~~~GGlL~yGIP~fR 374 (654)
T PRK12769 305 RYISDQALAKGWR--PDL-------SHVTKSDKRVAIIGAGPAGLACADVLTR-NGVAVTVYDRHPEIGGLLTFGIPAFK 374 (654)
T ss_pred HHHHHHHHHHCCC--CCC-------CCCCCCCCEEEEECCCHHHHHHHHHHHH-CCCEEEEECCCCCCCCEEEECCCCCC
T ss_conf 9998899971998--888-------8767789989998977899999999997-69757995257778866752486222
Q ss_pred -CHHHHHHHHHHHHHCCCC---CCEEEECCCCCCCCCCCCCEEEE
Q ss_conf -989999999998750288---60882155434457232467896
Q gi|254780634|r 265 -NKSRMAPIVARIKRAGIH---NVQLHSSWESLRNLQEHFTTVLV 305 (429)
Q Consensus 265 -~~~Rl~~l~~~~~r~g~~---~v~~~~~~~~~~~~~~~fd~vl~ 305 (429)
.+.-+..-.+.++.+|+. |+.+- .|.++..+...||.|++
T Consensus 375 Lpk~vv~~ei~~l~~lGV~f~~n~~VG-kDitl~eL~~~yDAVfl 418 (654)
T PRK12769 375 LDKSLLARRREIFSAMGIHFELNCEVG-KDISLESLLEDYDAVFV 418 (654)
T ss_pred CCHHHHHHHHHHHHHCCCEEECCCEEC-CCCCHHHHHHCCCEEEE
T ss_conf 778999999999982698898371768-76589999736998999
No 404
>PRK05867 short chain dehydrogenase; Provisional
Probab=24.66 E-value=45 Score=13.41 Aligned_cols=50 Identities=16% Similarity=0.228 Sum_probs=28.1
Q ss_pred CCCEEEECCCCCC-HHHHHHHHH-HCCCCEEHHHHCCHHHHHHHHHHHHHCCCC
Q ss_conf 6625860134688-279999998-616881005524989999999998750288
Q gi|254780634|r 231 NSSQILDFCAGGG-GKTLALSML-LNNKGQIHAWDNNKSRMAPIVARIKRAGIH 282 (429)
Q Consensus 231 ~g~~vLD~CAapG-GKt~~la~~-~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~ 282 (429)
.|..+|=.-|+.| |+. +|.. .....+|+.+|.+..+++.+.+.+...|-.
T Consensus 8 ~gKvalVTGas~GIG~a--iA~~la~~Ga~V~i~~r~~~~~~~~~~ei~~~g~~ 59 (253)
T PRK05867 8 HGKRALITGASTGIGKR--VALAYVEAGAQVAIAARHLDALEKLADEIGTSGGK 59 (253)
T ss_pred CCCEEEEECCCCHHHHH--HHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCE
T ss_conf 99989997956599999--99999986999999979889999999999845991
No 405
>pfam02977 CarbpepA_inh Carboxypeptidase A inhibitor.
Probab=24.34 E-value=27 Score=14.96 Aligned_cols=20 Identities=30% Similarity=0.404 Sum_probs=16.7
Q ss_pred HHHHHCCCCEEEEEECCCCH
Q ss_conf 99960898389997758882
Q gi|254780634|r 344 SAQFVRPEGYLVYITCSILP 363 (429)
Q Consensus 344 a~~~lk~gG~lvYsTCS~~~ 363 (429)
.+++-++.|=.+|++||+.|
T Consensus 21 C~k~~~t~~g~~~~~cs~~p 40 (40)
T pfam02977 21 CWKLKKTCGGYTGRACSILP 40 (40)
T ss_pred HHHHCCCCCCCCCCEEECCC
T ss_conf 98655788886562134178
No 406
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=24.25 E-value=46 Score=13.36 Aligned_cols=125 Identities=19% Similarity=0.193 Sum_probs=64.8
Q ss_pred CEEEECCCCCC--HHHHHHHHHH------CCC--CEEHHHHCC-HHHHHHHHHHHHHCCCCCCEEEECCCCCC-CC--CC
Q ss_conf 25860134688--2799999986------168--810055249-89999999998750288608821554344-57--23
Q gi|254780634|r 233 SQILDFCAGGG--GKTLALSMLL------NNK--GQIHAWDNN-KSRMAPIVARIKRAGIHNVQLHSSWESLR-NL--QE 298 (429)
Q Consensus 233 ~~vLD~CAapG--GKt~~la~~~------~~~--g~i~A~D~~-~~Rl~~l~~~~~r~g~~~v~~~~~~~~~~-~~--~~ 298 (429)
.+|. +..||= |||+-||-+. .++ --++..|.. -.=...|+.-++-+|+. +++......+. -+ -.
T Consensus 210 ~~vv-alVGPTGVGKTTTiAKLAA~~~l~~~~~kV~lIT~DtyRigA~eQLk~Ya~ilgvp-~~v~~~~~~l~~al~~~~ 287 (412)
T PRK05703 210 GGVV-ALVGPTGVGKTTTLAKLAARYALEEGKDKVALITLDTYRIGAVEQLKTYAKIMGIP-VKVAYDPKELAKALEQLA 287 (412)
T ss_pred CCEE-EEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHHHCCCE-EEEECCHHHHHHHHHHHC
T ss_conf 7369-99888887567699999999999729981799983767777999999999971973-798479999999998715
Q ss_pred CCCEEEECCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHCHHHHHHHHHHCC
Q ss_conf 24678962754450444442236672496789999998789999999960898389997758882429998999998579
Q gi|254780634|r 299 HFTTVLVDAPCSGTGTWRRRPDIKWRLSQKNLIERTEEQKKILEESAQFVRPEGYLVYITCSILPEENIQQINYFLSKNP 378 (429)
Q Consensus 299 ~fd~vl~DaPCSg~G~~rr~Pe~~w~~~~~~~~~~~~lQ~~iL~~a~~~lk~gG~lvYsTCS~~~~Ene~vv~~fL~~~~ 378 (429)
.+|.||+|-+ .|.|- .+..+.+|..+ ++.. .- ..=.||-| +|-..++=.++++.|-.-..
T Consensus 288 ~~dlILIDTa-------G~s~~-----d~~~~~eL~~~----~~~~-~~--~~~~LVls-at~~~~dl~~i~~~f~~~~~ 347 (412)
T PRK05703 288 NCDLILIDTA-------GRSQR-----DPRLISELKAL----IENS-KP--IDVYLVLS-ATTKYRDLKDIVKHFSRLPL 347 (412)
T ss_pred CCCEEEEECC-------CCCCC-----CHHHHHHHHHH----HHHC-CC--CCEEEEEC-CCCCHHHHHHHHHHHCCCCC
T ss_conf 8997999689-------88978-----99999999999----8624-88--71899975-98998999999998467999
Q ss_pred C
Q ss_conf 9
Q gi|254780634|r 379 H 379 (429)
Q Consensus 379 ~ 379 (429)
+
T Consensus 348 ~ 348 (412)
T PRK05703 348 D 348 (412)
T ss_pred C
T ss_conf 8
No 407
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=24.05 E-value=40 Score=13.76 Aligned_cols=45 Identities=18% Similarity=0.167 Sum_probs=27.4
Q ss_pred CCCCEEEECCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCH
Q ss_conf 324678962754450444442236672496789999998789999999960898389997758882
Q gi|254780634|r 298 EHFTTVLVDAPCSGTGTWRRRPDIKWRLSQKNLIERTEEQKKILEESAQFVRPEGYLVYITCSILP 363 (429)
Q Consensus 298 ~~fd~vl~DaPCSg~G~~rr~Pe~~w~~~~~~~~~~~~lQ~~iL~~a~~~lk~gG~lvYsTCS~~~ 363 (429)
-+.+.+|+|-|||.+--+ +-..++++. .-||..=++|-.|-++..
T Consensus 166 v~PeVlLmDEPtSALDPI----------sT~kIEeLi-----------~eLk~~yTIviVTHnmqQ 210 (253)
T COG1117 166 VKPEVLLMDEPTSALDPI----------STLKIEELI-----------TELKKKYTIVIVTHNMQQ 210 (253)
T ss_pred CCCCEEEECCCCCCCCCH----------HHHHHHHHH-----------HHHHHCCEEEEEECCHHH
T ss_conf 698678744864224813----------588999999-----------998746489999379999
No 408
>PRK05866 short chain dehydrogenase; Provisional
Probab=24.03 E-value=46 Score=13.33 Aligned_cols=52 Identities=23% Similarity=0.265 Sum_probs=36.5
Q ss_pred CCCEEEECCCCCC-HHHHHHHHHHCCCCEEHHHHCCHHHHHHHHHHHHHCCCCC
Q ss_conf 6625860134688-2799999986168810055249899999999987502886
Q gi|254780634|r 231 NSSQILDFCAGGG-GKTLALSMLLNNKGQIHAWDNNKSRMAPIVARIKRAGIHN 283 (429)
Q Consensus 231 ~g~~vLD~CAapG-GKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~ 283 (429)
.|..||=.-|+.| |+.+... +......|+.+|.++.+++.+.+.+...|...
T Consensus 39 ~GKvaLITGassGIG~aiA~~-la~~Ga~Vvl~~R~~~~l~~~~~~i~~~g~~~ 91 (290)
T PRK05866 39 TGKRILLTGASSGIGEAAAEK-FARRGATVVAVARRKDLLDAVADRITAAGGDA 91 (290)
T ss_pred CCCEEEECCCCCHHHHHHHHH-HHHCCCEEEEEECCHHHHHHHHHHHHHCCCEE
T ss_conf 999899908130999999999-99869989999899999999999999649908
No 409
>PRK06139 short chain dehydrogenase; Provisional
Probab=23.98 E-value=46 Score=13.32 Aligned_cols=26 Identities=0% Similarity=-0.045 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 55799999999999975899999705
Q gi|254780634|r 40 SSDRASISNIVHDVLRKYLSSAYIMD 65 (429)
Q Consensus 40 s~DR~~i~~lvyg~lR~~~~ld~il~ 65 (429)
-.|...+.+++-.+...++.+|-+++
T Consensus 64 Vsd~~~v~~~~~~~~~~~G~IDiLVN 89 (324)
T PRK06139 64 VTHADQVQALATQAASFLGRIDVWFN 89 (324)
T ss_pred CCCHHHHHHHHHHHHHHCCCCCEEEE
T ss_conf 78857899999999997499878864
No 410
>pfam05148 Methyltransf_8 Hypothetical methyltransferase. This family consists of several uncharacterized eukaryotic proteins which are related to methyltransferases pfam01209.
Probab=23.91 E-value=47 Score=13.31 Aligned_cols=108 Identities=15% Similarity=0.205 Sum_probs=60.5
Q ss_pred CCEEEECCCCCCHHHHHHHHHHCCCCEEHHHHCCHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCCEEEECCCCCC
Q ss_conf 62586013468827999999861688100552498999999999875028860882155434457232467896275445
Q gi|254780634|r 232 SSQILDFCAGGGGKTLALSMLLNNKGQIHAWDNNKSRMAPIVARIKRAGIHNVQLHSSWESLRNLQEHFTTVLVDAPCSG 311 (429)
Q Consensus 232 g~~vLD~CAapGGKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~~~~~~~~~~~fd~vl~DaPCSg 311 (429)
...|-|+.||-+. ||....+.-+|++.|..... ..| +.++....+-..+..|.++.-- |=
T Consensus 68 ~~vIaD~GCGdA~----lA~~~~~~~kV~SfDLva~n-------------~~V-t~cDi~~~PL~d~svDvaVfCL--SL 127 (214)
T pfam05148 68 NGVIADLGCGEAR----IAFRKREFENVHSFDLVAVN-------------KRV-IPCDMARVPLEDESVDVAVFCL--SL 127 (214)
T ss_pred CEEEEECCCCHHH----HHHHCCCCCEEEEEECCCCC-------------CCC-CCCCCCCCCCCCCCEEEEEEEH--HH
T ss_conf 7189975886579----99864678738851325689-------------883-5135336878877263687758--76
Q ss_pred CHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHCHHHHHHHHHH--CCCCEEEE
Q ss_conf 04444422366724967899999987899999999608983899977588824299989999985--79979941
Q gi|254780634|r 312 TGTWRRRPDIKWRLSQKNLIERTEEQKKILEESAQFVRPEGYLVYITCSILPEENIQQINYFLSK--NPHFSIDS 384 (429)
Q Consensus 312 ~G~~rr~Pe~~w~~~~~~~~~~~~lQ~~iL~~a~~~lk~gG~lvYsTCS~~~~Ene~vv~~fL~~--~~~~~~~~ 384 (429)
.|| -| .+.|.+|++.|||||.|.-+--. .+-+| ++.|.+. .=+|.+..
T Consensus 128 MGT-------N~--------------~~fi~EA~RvLk~~G~L~IAEV~-SRf~~---~~~Fv~~~~~~GF~~~~ 177 (214)
T pfam05148 128 MGT-------NI--------------ADFLKEANRILKNGGLLKIAEVR-SRFPS---VGLFERAFTKLGFEVEH 177 (214)
T ss_pred HCC-------CH--------------HHHHHHHHHHCCCCCEEEEEEEE-CCCCC---HHHHHHHHHHCCCEEEE
T ss_conf 288-------77--------------99999987603108789999974-01689---89999999975976775
No 411
>KOG3222 consensus
Probab=23.86 E-value=27 Score=14.94 Aligned_cols=44 Identities=7% Similarity=-0.044 Sum_probs=20.3
Q ss_pred CCCEEEECCCCCCHHHHHHHHHHCCCCEEHHHHCCHHH--HHHHHHHHHH
Q ss_conf 66258601346882799999986168810055249899--9999999875
Q gi|254780634|r 231 NSSQILDFCAGGGGKTLALSMLLNNKGQIHAWDNNKSR--MAPIVARIKR 278 (429)
Q Consensus 231 ~g~~vLD~CAapGGKt~~la~~~~~~g~i~A~D~~~~R--l~~l~~~~~r 278 (429)
++...||-|=-|-|-..-.+++-.. ..|-+|.++ +..+++-+..
T Consensus 144 ~~~fGwd~iFqP~g~~~tyaEMpk~----ekN~iSHRy~A~~klk~yl~~ 189 (195)
T KOG3222 144 PTDFGWDPIFQPDGYEQTYAEMPKD----EKNAISHRYRALAKLKEYLAE 189 (195)
T ss_pred CCCCCCCCCCCCCCCCCCHHHCCHH----HHHHHHHHHHHHHHHHHHHHH
T ss_conf 8877877445878531106447866----751031889999999999986
No 412
>TIGR02207 lipid_A_htrB lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase; InterPro: IPR011920 Bacterial lipopolysachharides (LPS) are glycolipids that make up the outer monolayer of the outer membranes of most Gram-negative bacteria. Though LPS moleculesare variable, they all show the same general features: an outer polysaccharide which is attached to the lipid component, termed lipid A . The polysaccharide component consists of a variable repeat-structure polysaccharide known as the O-antigen, and a highly conserved short core oligosaccharide which connects the O-antigen to lipid A. Lipid A is a glucosamine-based phospholipid that makes up the membrane anchor region of LPS . The structure of lipid A is relatively invariant between species, presumably reflecting its fundamental role in membrane integrity. Recognition of lipid A by the innate immune system can lead to a response even at picomolar levels. In some genera, such as Neisseria and Haemophilus, lipooligosaccharides (LOS) are the predominant glycolipids . These are analogous to LPS except that they lack O-antigens, with the LOS oligosaccharide structures limited to 10 saccharide units. This entry represents a narrow clade of acyltransferases, nearly all of which transfer a lauroyl group to KDO2-lipid IV-A, a lipid A precursor; these proteins are termed lipid A biosynthesis lauroyl acyltransferase, HtrB. An exception is a closely related paralog of Escherichia coli HtrB, LpxP, which acts in cold shock conditions by transferring a palmitoleoyl rather than lauroyl group to the lipid A precursor. Members of this family are homologous to the family of acyltransferases responsible for the next step in lipid A biosynthesis .; GO: 0016747 transferase activity transferring groups other than amino-acyl groups, 0009276 1-2nm peptidoglycan-based cell wall, 0016021 integral to membrane.
Probab=23.86 E-value=24 Score=15.29 Aligned_cols=14 Identities=7% Similarity=0.207 Sum_probs=7.4
Q ss_pred EEECCCCCCCCCCC
Q ss_conf 98415565421123
Q gi|254780634|r 214 EIQDEGSQIVSNLT 227 (429)
Q Consensus 214 ~VQD~aSql~~~~l 227 (429)
-|+|+|+..-...|
T Consensus 215 Av~~AATttGT~~L 228 (308)
T TIGR02207 215 AVPDAATTTGTSVL 228 (308)
T ss_pred CCCCHHHHHHHHHH
T ss_conf 77641589999999
No 413
>TIGR02740 TraF-like TraF-like protein; InterPro: IPR014111 This entry contains TraF-like proteins that are related to the F-type conjugation system pilus assembly proteins TraF (IPR014110 from INTERPRO)and TrbB (IPR014109 from INTERPRO) both of which exhibit a thioredoxin fold . The proteins in this entry have the same length and architecture as TraF, but lack the CXXC-motif found in TrbB that is believed to be responsible for the disulphide isomerase activity..
Probab=23.82 E-value=47 Score=13.30 Aligned_cols=59 Identities=14% Similarity=0.132 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCEEE--EEE-CCCCHHHCHHHHHHHHHHCCCCEEEECCCCCCCC
Q ss_conf 99999987899999999608983899--977-5888242999899999857997994143002223
Q gi|254780634|r 330 LIERTEEQKKILEESAQFVRPEGYLV--YIT-CSILPEENIQQINYFLSKNPHFSIDSIIDDWNQL 392 (429)
Q Consensus 330 ~~~~~~lQ~~iL~~a~~~lk~gG~lv--YsT-CS~~~~Ene~vv~~fL~~~~~~~~~~~~~~~~~~ 392 (429)
...-.+.|++= ....+-+.+|..- =|+ |...-++ .-|=.+++.+-+|.+.+++-+....
T Consensus 177 ~~~~~~~q~~~--v~~~la~~~GlFFFf~S~~C~~C~~~--~pil~~~~~~YG~~V~pvS~DG~PL 238 (306)
T TIGR02740 177 LDTEAKKQKDR--VLKELAKKSGLFFFFKSDDCPYCHAQ--APILKAFEDRYGIEVLPVSVDGGPL 238 (306)
T ss_pred HHHHHHHHHHH--HHHHHHCCCEEEEEEECCCCCCHHHH--HHHHHHHHHHCCCEEEEEEECCCCC
T ss_conf 99999861999--99997407516899727886622689--9999999973197089998458887
No 414
>KOG3178 consensus
Probab=23.60 E-value=47 Score=13.28 Aligned_cols=108 Identities=12% Similarity=0.150 Sum_probs=65.3
Q ss_pred CCCCCCC----CEEEECCCCCCHHHHHHHHHHCCCCEEHHHHCCHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCC
Q ss_conf 2366666----258601346882799999986168810055249899999999987502886088215543445723246
Q gi|254780634|r 226 LTAITNS----SQILDFCAGGGGKTLALSMLLNNKGQIHAWDNNKSRMAPIVARIKRAGIHNVQLHSSWESLRNLQEHFT 301 (429)
Q Consensus 226 ~l~~~~g----~~vLD~CAapGGKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~~~~~~~~~~~fd 301 (429)
.+....| ...+|+-+|-|-=+-++..... .|-.++.+..=+-...+.+. .|+.++. .+... . ..+-|
T Consensus 168 il~~~~Gf~~v~~avDvGgGiG~v~k~ll~~fp---~ik~infdlp~v~~~a~~~~-~gV~~v~---gdmfq-~-~P~~d 238 (342)
T KOG3178 168 ILEVYTGFKGVNVAVDVGGGIGRVLKNLLSKYP---HIKGINFDLPFVLAAAPYLA-PGVEHVA---GDMFQ-D-TPKGD 238 (342)
T ss_pred HHHHHCCCCCCCEEEECCCCHHHHHHHHHHHCC---CCCEEECCHHHHHHHHHHHC-CCCCEEC---CCCCC-C-CCCCC
T ss_conf 420102655676688758747699999997588---77255147899985223206-7865123---64534-5-88767
Q ss_pred EEEECCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCC
Q ss_conf 7896275445044444223667249678999999878999999996089838999775888
Q gi|254780634|r 302 TVLVDAPCSGTGTWRRRPDIKWRLSQKNLIERTEEQKKILEESAQFVRPEGYLVYITCSIL 362 (429)
Q Consensus 302 ~vl~DaPCSg~G~~rr~Pe~~w~~~~~~~~~~~~lQ~~iL~~a~~~lk~gG~lvYsTCS~~ 362 (429)
.|++- =|.|. | +-+++ .+||.+.++.|+|||.++-.-|=+.
T Consensus 239 aI~mk-WiLhd----------w--tDedc-------vkiLknC~~sL~~~GkIiv~E~V~p 279 (342)
T KOG3178 239 AIWMK-WILHD----------W--TDEDC-------VKILKNCKKSLPPGGKIIVVENVTP 279 (342)
T ss_pred EEEEE-EECCC----------C--CHHHH-------HHHHHHHHHHCCCCCEEEEEECCCC
T ss_conf 59987-00056----------8--76889-------9999999985899888999835688
No 415
>TIGR01326 OAH_OAS_sulfhy O-acetylhomoserine aminocarboxypropyltransferase/cysteine synthase; InterPro: IPR006235 This family of sequences is a distinct clade of the Cys/Met metabolism pyridoxal phosphate-dependent enzyme superfamily. Members include examples of OAH/OAS sulfhydrylase, an enzyme with activity both as O-acetylhomoserine sulfhydrylase (OAH, 2.5.1.49 from EC) and O-acetylserine sulfhydrylase (OAS, 2.5.1.47 from EC). An alternate name for OAH sulfhydrylase is homocysteine synthase.; GO: 0016765 transferase activity transferring alkyl or aryl (other than methyl) groups, 0006520 amino acid metabolic process.
Probab=23.45 E-value=42 Score=13.62 Aligned_cols=38 Identities=16% Similarity=0.155 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHCHHHHHHHHHHCCCCEEEECCC
Q ss_conf 9999998789999999960898389997758882429998999998579979941430
Q gi|254780634|r 330 LIERTEEQKKILEESAQFVRPEGYLVYITCSILPEENIQQINYFLSKNPHFSIDSIID 387 (429)
Q Consensus 330 ~~~~~~lQ~~iL~~a~~~lk~gG~lvYsTCS~~~~Ene~vv~~fL~~~~~~~~~~~~~ 387 (429)
+.-|-.|-.+|=+|. ||-..|..||++||+.+=|..+.
T Consensus 293 lQGLETLsLR~ERH~--------------------~NA~kVA~fL~~Hp~V~wV~YPG 330 (434)
T TIGR01326 293 LQGLETLSLRMERHV--------------------ENALKVAEFLEAHPKVAWVNYPG 330 (434)
T ss_pred HHHHHHHHHHHHHHH--------------------HHHHHHHHHHHCCCCCCCCCCCC
T ss_conf 986667876788888--------------------99999999972788445134888
No 416
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=23.41 E-value=48 Score=13.25 Aligned_cols=14 Identities=29% Similarity=0.183 Sum_probs=10.9
Q ss_pred CEEEECCCCCCCHH
Q ss_conf 67896275445044
Q gi|254780634|r 301 TTVLVDAPCSGTGT 314 (429)
Q Consensus 301 d~vl~DaPCSg~G~ 314 (429)
|.|++|.|-+..-.
T Consensus 35 d~iiiD~~~~~~~~ 48 (99)
T cd01983 35 DYVLIDTPPGLGLL 48 (99)
T ss_pred CCEEECCCCCCCHH
T ss_conf 71788589988846
No 417
>KOG2305 consensus
Probab=23.36 E-value=43 Score=13.52 Aligned_cols=14 Identities=14% Similarity=0.067 Sum_probs=9.4
Q ss_pred HHHHHHHHHHCCCC
Q ss_conf 48999999862898
Q gi|254780634|r 140 DTWLKEAKSLSMRA 153 (429)
Q Consensus 140 e~~~~~l~a~~~~~ 153 (429)
+.+.++|.+.-++|
T Consensus 167 drt~~lM~sigq~p 180 (313)
T KOG2305 167 DRTRALMRSIGQEP 180 (313)
T ss_pred HHHHHHHHHHCCCC
T ss_conf 99999999837777
No 418
>KOG2651 consensus
Probab=23.22 E-value=43 Score=13.53 Aligned_cols=43 Identities=28% Similarity=0.374 Sum_probs=30.3
Q ss_pred CCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHCCCCEEHHHHCCH
Q ss_conf 421123666662586013468827999999861688100552498
Q gi|254780634|r 222 IVSNLTAITNSSQILDFCAGGGGKTLALSMLLNNKGQIHAWDNNK 266 (429)
Q Consensus 222 l~~~~l~~~~g~~vLD~CAapGGKt~~la~~~~~~g~i~A~D~~~ 266 (429)
++..+.+-.+=..|.|..||+|-=+-.|+ .+++-.|+|+|-+.
T Consensus 144 lvSsi~~f~gi~~vvD~GaG~G~LSr~lS--l~y~lsV~aIegsq 186 (476)
T KOG2651 144 LVSSISDFTGIDQVVDVGAGQGHLSRFLS--LGYGLSVKAIEGSQ 186 (476)
T ss_pred HHHHHHHHCCCCHHHCCCCCCCHHHHHHH--HCCCCEEEEECCCH
T ss_conf 99988765187114115777328999986--42681699964636
No 419
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=23.13 E-value=48 Score=13.22 Aligned_cols=75 Identities=21% Similarity=0.251 Sum_probs=36.8
Q ss_pred CCHHH---HHHHHHHCCCCEEHH--------HHCCHHHHHHHHHHHHH----CCCCCCEEEECCCCCCCCCCCCCEEEEC
Q ss_conf 88279---999998616881005--------52498999999999875----0288608821554344572324678962
Q gi|254780634|r 242 GGGKT---LALSMLLNNKGQIHA--------WDNNKSRMAPIVARIKR----AGIHNVQLHSSWESLRNLQEHFTTVLVD 306 (429)
Q Consensus 242 pGGKt---~~la~~~~~~g~i~A--------~D~~~~Rl~~l~~~~~r----~g~~~v~~~~~~~~~~~~~~~fd~vl~D 306 (429)
++|-| +.|+.+++=+--|+| .+-++.|...++..+.. .|... ..+ --
T Consensus 121 ~~~QTreH~~l~~~lGik~iIVavNKMD~v~~~y~~~rf~~i~~~~~~~l~~~g~~~--------------~~~----~~ 182 (219)
T cd01883 121 KGGQTREHALLARTLGVKQLIVAVNKMDDVTVNWSEERYDEIKKELSPFLKKVGYNP--------------KDV----PF 182 (219)
T ss_pred CCCHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCC--------------CCC----EE
T ss_conf 776599999999984997489999875368865259999999999999999829995--------------661----59
Q ss_pred CCCCC---CHHHHHHHHHHHHCCHHHHHHHH
Q ss_conf 75445---04444422366724967899999
Q gi|254780634|r 307 APCSG---TGTWRRRPDIKWRLSQKNLIERT 334 (429)
Q Consensus 307 aPCSg---~G~~rr~Pe~~w~~~~~~~~~~~ 334 (429)
.|+|| ..++.+.+.+.|...|.-++.|-
T Consensus 183 IPiSa~~GdNi~~~s~~m~WY~GptLl~~Ld 213 (219)
T cd01883 183 IPISGLTGDNLIEKSENMPWYKGPTLLEALD 213 (219)
T ss_pred EEEECCCCCCCCCCCCCCCCCCCCHHHHHHH
T ss_conf 9933676630466788998987816999984
No 420
>PRK09634 nusB transcription antitermination protein NusB; Provisional
Probab=23.05 E-value=48 Score=13.21 Aligned_cols=22 Identities=18% Similarity=0.052 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999999997589999970
Q gi|254780634|r 43 RASISNIVHDVLRKYLSSAYIM 64 (429)
Q Consensus 43 R~~i~~lvyg~lR~~~~ld~il 64 (429)
|.++-+++-.+++|+..+|..+
T Consensus 114 R~~a~~~i~~v~~~~~eID~~i 135 (206)
T PRK09634 114 REYALERVGLVIRNRDEIDELL 135 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999999999997589999999
No 421
>TIGR02402 trehalose_TreZ malto-oligosyltrehalose trehalohydrolase; InterPro: IPR012768 Members of this family are the trehalose biosynthetic enzyme malto-oligosyltrehalose trehalohydrolase, formally known as 4-alpha-D-{(1->4)-alpha-D-glucano}trehalose trehalohydrolase (3.2.1.141 from EC). It is the TreZ protein of the TreYZ pathway for trehalose biosynthesis, and alternative to the OtsAB system.; GO: 0004553 hydrolase activity hydrolyzing O-glycosyl compounds, 0005992 trehalose biosynthetic process.
Probab=22.97 E-value=49 Score=13.19 Aligned_cols=14 Identities=36% Similarity=0.498 Sum_probs=4.8
Q ss_pred CCEEEECCCCCCCH
Q ss_conf 46789627544504
Q gi|254780634|r 300 FTTVLVDAPCSGTG 313 (429)
Q Consensus 300 fd~vl~DaPCSg~G 313 (429)
||.||.=||=++-|
T Consensus 154 YDGVl~yAp~~~YG 167 (564)
T TIGR02402 154 YDGVLPYAPHEAYG 167 (564)
T ss_pred CCCCCCCCCCCCCC
T ss_conf 35544456217787
No 422
>PRK08945 short chain dehydrogenase; Provisional
Probab=22.86 E-value=49 Score=13.18 Aligned_cols=125 Identities=14% Similarity=0.167 Sum_probs=64.6
Q ss_pred CCCEEEECCCCCCHHHHHHHHHH-CCCCEEHHHHCCHHHHHHHHHHHHHCCCCCCEEEECCC--C-----------CCCC
Q ss_conf 66258601346882799999986-16881005524989999999998750288608821554--3-----------4457
Q gi|254780634|r 231 NSSQILDFCAGGGGKTLALSMLL-NNKGQIHAWDNNKSRMAPIVARIKRAGIHNVQLHSSWE--S-----------LRNL 296 (429)
Q Consensus 231 ~g~~vLD~CAapGGKt~~la~~~-~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~~~--~-----------~~~~ 296 (429)
.|..||=.-|+.| ==..+|..+ .....|+.++.+..+++.+.+.++..|.....+..-|. . ....
T Consensus 12 ~gK~~lITGas~G-IG~aiA~~la~~Ga~Vil~~r~~~~l~~~~~el~~~~~~~~~~~~~d~~~~~~~~~~~~~~~i~~~ 90 (245)
T PRK08945 12 KDRIILVTGAGDG-IGREAALTYARHGATVILLGRTEEKLEAVYDEIEAAGGPQPAIIPLDLLGATEQNYQDLADTIEEQ 90 (245)
T ss_pred CCCEEEEECCCHH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCCCEEEEEEECCCCCHHHHHHHHHHHHHH
T ss_conf 9798999488618-999999999987998999969889999999999974798448999446759999999999999998
Q ss_pred CCCCCEEEECCCCCCC-HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHC--CCCEEEEEEC
Q ss_conf 2324678962754450-4444422366724967899999987899999999608--9838999775
Q gi|254780634|r 297 QEHFTTVLVDAPCSGT-GTWRRRPDIKWRLSQKNLIERTEEQKKILEESAQFVR--PEGYLVYITC 359 (429)
Q Consensus 297 ~~~fd~vl~DaPCSg~-G~~rr~Pe~~w~~~~~~~~~~~~lQ~~iL~~a~~~lk--~gG~lvYsTC 359 (429)
-++.|.++.-|--.|. +.+..-++-.|.. .++--..-...+...+.+.++ .+|.+|..+-
T Consensus 91 ~g~iD~lVnNAG~~~~~~~~~~~~~~~~~~---~~~vNl~g~~~l~~~~~p~m~~~~~G~Ii~isS 153 (245)
T PRK08945 91 FGRLDGVLHNAGLLGELGPMEQQDPEVWQD---VMQVNVNATFMLTQALLPLLLKSPAASLVFTSS 153 (245)
T ss_pred HCCCCEEEECCCCCCCCCCHHHCCHHHHHH---HHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECC
T ss_conf 099879998887557898826699999999---875675999999999999998779978999786
No 423
>cd01977 Nitrogenase_VFe_alpha Nitrogenase_VFe_alpha -like: Nitrogenase VFe protein, alpha subunit like. This group contains proteins similar to the alpha subunits of, the VFe protein of the vanadium-dependent (V-) nitrogenase and the FeFe protein of the iron only (Fe-) nitrogenase Nitrogenase catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. In addition to V- and Fe- nitrogenases there is a molybdenum (Mo)-dependent nitrogenase which is the most widespread and best characterized of these systems. These systems consist of component 1 (VFe protein, FeFe protein or, MoFe protein respectively) and, component 2 (Fe protein). MoFe is an alpha2beta2 tetramer, V-and Fe- nitrogenases are alpha2beta2delta2 hexamers. The alpha and beta subunits of VFe and FeFe are similar to the alpha and beta subunits of MoFe. For MoFe each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha sub
Probab=22.80 E-value=49 Score=13.17 Aligned_cols=18 Identities=17% Similarity=0.065 Sum_probs=12.6
Q ss_pred CCHHHHHHHHHHCCCCCC
Q ss_conf 998999998987188754
Q gi|254780634|r 164 VNRCKLFKNLCHYGVHHS 181 (429)
Q Consensus 164 ~~~~~~~~~L~~~gi~~~ 181 (429)
.+..++...|...|++..
T Consensus 175 gd~~eikrll~~~Gi~v~ 192 (415)
T cd01977 175 GDTEVLQKYFERMGIQVL 192 (415)
T ss_pred CCHHHHHHHHHHCCCCEE
T ss_conf 528999999997599579
No 424
>COG2103 Predicted sugar phosphate isomerase [General function prediction only]
Probab=22.61 E-value=49 Score=13.15 Aligned_cols=12 Identities=17% Similarity=0.531 Sum_probs=5.3
Q ss_pred CCEEEECCCCCC
Q ss_conf 467896275445
Q gi|254780634|r 300 FTTVLVDAPCSG 311 (429)
Q Consensus 300 fd~vl~DaPCSg 311 (429)
|+-.+||+--|.
T Consensus 218 y~NlMVDv~atN 229 (298)
T COG2103 218 YGNLMVDVKATN 229 (298)
T ss_pred CCCEEEEEECCH
T ss_conf 056578753463
No 425
>COG1759 5-formaminoimidazole-4-carboxamide-1-beta-D-ribofuranosyl 5'-monophosphate synthetase (purine biosynthesis) [Nucleotide transport and metabolism]
Probab=22.58 E-value=41 Score=13.67 Aligned_cols=22 Identities=23% Similarity=0.356 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 9999998789999999960898
Q gi|254780634|r 330 LIERTEEQKKILEESAQFVRPE 351 (429)
Q Consensus 330 ~~~~~~lQ~~iL~~a~~~lk~g 351 (429)
+...-+.-.+..+++-.++.||
T Consensus 268 L~~vfe~ger~V~a~kel~~PG 289 (361)
T COG1759 268 LPKVFEMGERFVEATKELVPPG 289 (361)
T ss_pred HHHHHHHHHHHHHHHHHHCCCC
T ss_conf 8999999999999998745998
No 426
>pfam00799 Gemini_AL1 Geminivirus Rep catalytic domain. The AL1 proteins encodes the replication initiator protein (Rep) of geminiviruses, which is a replicon-specific initiator enzyme and is an essential component of the replisome. For geminivirus Rep protein, this N-terminal region is crucial for origin recognition and DNA cleavage and nucleotidyl transfer.
Probab=22.32 E-value=42 Score=13.64 Aligned_cols=24 Identities=38% Similarity=0.757 Sum_probs=17.4
Q ss_pred CCEEEEEECCCCHHHCHHHHHHHH
Q ss_conf 838999775888242999899999
Q gi|254780634|r 351 EGYLVYITCSILPEENIQQINYFL 374 (429)
Q Consensus 351 gG~lvYsTCS~~~~Ene~vv~~fL 374 (429)
.=.|.|.-||+.+||--+++..++
T Consensus 7 n~FLTYPqC~l~kE~al~~l~~l~ 30 (114)
T pfam00799 7 NVFLTYPRCSLSPEEALEQLQDLL 30 (114)
T ss_pred EEEEECCCCCCCHHHHHHHHHHHC
T ss_conf 288767999999999999999757
No 427
>PTZ00088 adenylate kinase 1; Provisional
Probab=22.28 E-value=50 Score=13.10 Aligned_cols=14 Identities=14% Similarity=0.107 Sum_probs=5.3
Q ss_pred HHHHHHHHHHHHHH
Q ss_conf 99999987899999
Q gi|254780634|r 330 LIERTEEQKKILEE 343 (429)
Q Consensus 330 ~~~~~~lQ~~iL~~ 343 (429)
++.+.+...-+++.
T Consensus 181 L~~Y~~~T~Plidy 194 (225)
T PTZ00088 181 LDSYESDNIHIINF 194 (225)
T ss_pred HHHHHHHHHHHHHH
T ss_conf 99999972189999
No 428
>cd02035 ArsA ArsA ATPase functionas as an efflux pump located on the inner membrane of the cell. This ATP-driven oxyanion pump catalyzes the extrusion of arsenite, antimonite and arsenate. Maintenance of a low intracellular concentration of oxyanion produces resistance to the toxic agents. The pump is composed of two subunits, the catalytic ArsA subunit and the membrane subunit ArsB, which are encoded by arsA and arsB genes respectively. Arsenic efflux in bacteria is catalyzed by either ArsB alone or by ArsAB complex. The ATP-coupled pump, however, is more efficient. ArsA is composed of two homologous halves, A1 and A2, connected by a short linker sequence.
Probab=21.86 E-value=50 Score=13.12 Aligned_cols=15 Identities=13% Similarity=0.394 Sum_probs=9.2
Q ss_pred CCCCEEEECCCCCCC
Q ss_conf 324678962754450
Q gi|254780634|r 298 EHFTTVLVDAPCSGT 312 (429)
Q Consensus 298 ~~fd~vl~DaPCSg~ 312 (429)
+.||.|++|.|=||-
T Consensus 112 ~~yD~IVvDtpPTGh 126 (217)
T cd02035 112 GLYDVIVFDTAPTGH 126 (217)
T ss_pred CCCCEEEECCCCCHH
T ss_conf 899889982898556
No 429
>PRK13761 hypothetical protein; Provisional
Probab=21.81 E-value=51 Score=13.04 Aligned_cols=36 Identities=22% Similarity=0.246 Sum_probs=15.8
Q ss_pred CHHHHHHHHHHCCCCCCCCCCCCCCCCHH---HHHHHHHHCCC
Q ss_conf 44899999986289861112477889989---99998987188
Q gi|254780634|r 139 KDTWLKEAKSLSMRAPLDLRTNTLKVNRC---KLFKNLCHYGV 178 (429)
Q Consensus 139 ge~~~~~l~a~~~~~pl~iRvN~~k~~~~---~~~~~L~~~gi 178 (429)
|++..++...++.+ |-||...-+.+ .+.+.|.+.|.
T Consensus 83 ~~e~v~La~~~~a~----iEVNlFyrT~eR~~~i~~~l~~~g~ 121 (248)
T PRK13761 83 PDEIVELAKALGAK----IEVNLFYRTEERVEKIAEVLREHGA 121 (248)
T ss_pred HHHHHHHHHHHCCC----EEEEECCCCHHHHHHHHHHHHHCCC
T ss_conf 69899999980998----7999524898999999999997699
No 430
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=21.70 E-value=51 Score=13.03 Aligned_cols=120 Identities=14% Similarity=0.132 Sum_probs=56.1
Q ss_pred CCCCC--HHHHHHHHHHC------CCCEEHHHHCCHHHH---HHHHHHHHHCCCCCCEEEECCCCCCCC--CCCCCEEEE
Q ss_conf 34688--27999999861------688100552498999---999999875028860882155434457--232467896
Q gi|254780634|r 239 CAGGG--GKTLALSMLLN------NKGQIHAWDNNKSRM---APIVARIKRAGIHNVQLHSSWESLRNL--QEHFTTVLV 305 (429)
Q Consensus 239 CAapG--GKt~~la~~~~------~~g~i~A~D~~~~Rl---~~l~~~~~r~g~~~v~~~~~~~~~~~~--~~~fd~vl~ 305 (429)
.-||= |||+-||-+.. +..+|--+=.+.-|+ +.|+.-.+-+|+..-.+.+..+...-+ -...|.||+
T Consensus 181 lVGPTGVGKTTTiAKLAAr~~l~~g~~kVaLIT~DTYRIgAvEQLktYa~IlgvPv~vv~~~~eL~~aL~~l~~~dlILI 260 (404)
T PRK06995 181 LVGPTGVGKTTTTAKLAARCVMRHGASKVALLTTDSYRIGGHEQLRIYGKILGVPVHAVKDAADLRLALAELRNKHIVLI 260 (404)
T ss_pred EECCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHCCCCEEEE
T ss_conf 86688876375899999999998389837999768754789999999998759559995999999999997089999998
Q ss_pred CCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHCHHHHHHHHHHCC
Q ss_conf 2754450444442236672496789999998789999999960898389997758882429998999998579
Q gi|254780634|r 306 DAPCSGTGTWRRRPDIKWRLSQKNLIERTEEQKKILEESAQFVRPEGYLVYITCSILPEENIQQINYFLSKNP 378 (429)
Q Consensus 306 DaPCSg~G~~rr~Pe~~w~~~~~~~~~~~~lQ~~iL~~a~~~lk~gG~lvYsTCS~~~~Ene~vv~~fL~~~~ 378 (429)
|-+ .|.| .|- ...-|.+.|..+..-+. .++=.-||-..+.=.++++.|=.-..
T Consensus 261 DTa-------Grs~--------rD~--~~~e~l~~l~~~~~~~~---~~LVLsat~~~~dl~~i~~~f~~~~~ 313 (404)
T PRK06995 261 DTV-------GMSQ--------RDR--MVSEQIAMLHGAGAPVQ---RLLLLNATSHGDTLNEVVQAYRGPGL 313 (404)
T ss_pred ECC-------CCCC--------CCH--HHHHHHHHHHHCCCCCE---EEEEECCCCCHHHHHHHHHHHCCCCC
T ss_conf 099-------9897--------688--89999999973578852---89997798999999999998446999
No 431
>pfam04189 Gcd10p Gcd10p family. eIF-3 is a multi-subunit complex that stimulates translation initiation in vitro at several different steps. This family corresponds to the gamma subunit if eIF3. The Yeast protein Gcd10p has also been shown to be part of a complex with the methyltransferase Gcd14p that is involved in modifying tRNA.
Probab=21.65 E-value=51 Score=13.02 Aligned_cols=35 Identities=20% Similarity=0.303 Sum_probs=20.9
Q ss_pred CCCCCCCCE--EEECCCCCCHHHHHHHHHHCCCCEEHHH
Q ss_conf 236666625--8601346882799999986168810055
Q gi|254780634|r 226 LTAITNSSQ--ILDFCAGGGGKTLALSMLLNNKGQIHAW 262 (429)
Q Consensus 226 ~l~~~~g~~--vLD~CAapGGKt~~la~~~~~~g~i~A~ 262 (429)
+.++.+|.+ |.|-| -|==+..++++|++.|.|+..
T Consensus 197 ~anV~~~g~~lv~d~~--~GLv~~A~~eRmgg~G~i~~~ 233 (300)
T pfam04189 197 LANVRAGGRYLVVDET--GGLLVAAMLERMGGEGKIVQI 233 (300)
T ss_pred HCCCCCCCEEEEEECC--CCHHHHHHHHHCCCCCEEEEE
T ss_conf 4177989869999688--897999999973798349997
No 432
>pfam07327 Neuroparsin Neuroparsin. This family consists of several locust specific neuroparsin proteins. Neuroparsins are produced by the A1 type of protocerebral median neurosecretory cells of the PI-CC system and display pleiotropic activities: inhibition of the effect of juvenile hormone, stimulation of fluid reabsorption of isolated recta, induction of an increase in hemolymph lipid and trehalose levels, and neurotrophic effects.
Probab=21.64 E-value=51 Score=13.02 Aligned_cols=11 Identities=36% Similarity=0.453 Sum_probs=5.9
Q ss_pred CCHHHHHHHHH
Q ss_conf 97168999999
Q gi|254780634|r 1 MRLGGQIAAAI 11 (429)
Q Consensus 1 M~~~aR~~AA~ 11 (429)
|+|+|-++||.
T Consensus 1 mkpaaalaaat 11 (103)
T pfam07327 1 MKPAAALAAAT 11 (103)
T ss_pred CCHHHHHHHHH
T ss_conf 96468889999
No 433
>COG0009 SUA5 Putative translation factor (SUA5) [Translation, ribosomal structure and biogenesis]
Probab=21.50 E-value=52 Score=13.00 Aligned_cols=22 Identities=23% Similarity=0.141 Sum_probs=10.6
Q ss_pred CCHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 74489999998628986111247
Q gi|254780634|r 138 FKDTWLKEAKSLSMRAPLDLRTN 160 (429)
Q Consensus 138 ~ge~~~~~l~a~~~~~pl~iRvN 160 (429)
+++.+.++++.+- |-|+++=+.
T Consensus 80 ~~~~~~~l~~~fw-PGPlT~Il~ 101 (211)
T COG0009 80 VPDVARKLLKAFW-PGPLTFILP 101 (211)
T ss_pred CCHHHHHHHHHHC-CCCEEEEEE
T ss_conf 8999999999719-997599986
No 434
>cd03470 Rieske_cytochrome_bc1 Iron-sulfur protein (ISP) component of the bc(1) complex family, Rieske domain; The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer. The bc(1) complex is a multisubunit enzyme found in many different organisms including uni- and multi-cellular eukaryotes, plants (in their mitochondria) and bacteria. The cytochrome bc(1) and b6f complexes are central components of the respiratory and photosynthetic electron transport chains, respectively, which carry out similar core electron and proton transfer steps. The bc(1) and b6f complexes share a common core structure of three catalytic subunits: cyt b, the Rieske ISP, and either a cyt c1 in the bc(1) complex or cyt f in the b6f complex, which are arranged in an integral membrane-bound dimeric complex. While the core of the b6f complex is similar to that of the bc(1) complex, the domain arrangement outside the core and the complement of prosthetic groups are strikingly different.
Probab=21.46 E-value=29 Score=14.75 Aligned_cols=47 Identities=21% Similarity=0.429 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHCCHHHHHHHHHHHHHHHHH------HHHHHCCCCEEEEEECC
Q ss_conf 444422366724967899999987899999------99960898389997758
Q gi|254780634|r 314 TWRRRPDIKWRLSQKNLIERTEEQKKILEE------SAQFVRPEGYLVYITCS 360 (429)
Q Consensus 314 ~~rr~Pe~~w~~~~~~~~~~~~lQ~~iL~~------a~~~lk~gG~lvYsTCS 360 (429)
.||-+|=--+|+|++.+..+......+++. ..+..+|.=.+++..||
T Consensus 18 ~WRGKPVfI~rRT~~~i~~~~~~~~~~~~~p~~~~~~~rs~~~e~lV~igvCT 70 (126)
T cd03470 18 EWRGKPVFIRRRTPEEIAEAKAVDLSLLDDPDPAANRVRSGKPEWLVVIGICT 70 (126)
T ss_pred EECCEEEEEEECCHHHHHHHHHCCHHHCCCCHHCCCCCCCCCCCEEEEECCCC
T ss_conf 98994899994899999876626153539801223541117875799970336
No 435
>pfam03091 CutA1 CutA1 divalent ion tolerance protein. Several gene loci with a possible involvement in cellular tolerance to copper have been identified. One such locus in eubacteria and archaebacteria, cutA, is thought to be involved in cellular tolerance to a wide variety of divalent cations other than copper. The cutA locus consists of two operons, of one and two genes. The CutA1 protein is a cytoplasmic protein, encoded by the single-gene operon and has been linked to divalent cation tolerance. It has no recognized structural motifs. This family also contains putative proteins from eukaryotes (human and Drosophila).
Probab=21.40 E-value=52 Score=12.99 Aligned_cols=23 Identities=13% Similarity=0.144 Sum_probs=13.9
Q ss_pred EEEEEECCCCHHHCHHHHHHHHHH
Q ss_conf 899977588824299989999985
Q gi|254780634|r 353 YLVYITCSILPEENIQQINYFLSK 376 (429)
Q Consensus 353 ~lvYsTCS~~~~Ene~vv~~fL~~ 376 (429)
.|||.||+ +.++-+...+..+++
T Consensus 2 ilV~tT~~-~~~~A~~ia~~Ll~~ 24 (102)
T pfam03091 2 IVVLVTAP-DEESAEKLARKLVEE 24 (102)
T ss_pred EEEEEECC-CHHHHHHHHHHHHHC
T ss_conf 89999279-999999999999975
No 436
>pfam06626 DUF1152 Protein of unknown function (DUF1152). This family consists of several hypothetical archaeal proteins of unknown function.
Probab=21.23 E-value=52 Score=12.96 Aligned_cols=47 Identities=15% Similarity=0.190 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHCCCCEEEEEECCCCHHHCHHHHHHHHHHCC-CCEEEECC
Q ss_conf 789999999960898389997758882429998999998579-97994143
Q gi|254780634|r 337 QKKILEESAQFVRPEGYLVYITCSILPEENIQQINYFLSKNP-HFSIDSII 386 (429)
Q Consensus 337 Q~~iL~~a~~~lk~gG~lvYsTCS~~~~Ene~vv~~fL~~~~-~~~~~~~~ 386 (429)
|..+|++.+..-+.||+| -+||+.+ |..+.++.+++.+| +.+.+++.
T Consensus 174 ~~~~l~~iaeia~~gG~l--g~~gl~~-~~~e~l~~~~~~~~teAS~i~~~ 221 (297)
T pfam06626 174 REYLLQRISEIAREGGLL--GIVGLDR-EDVEVLEKLLEVVVTEASAIPLR 221 (297)
T ss_pred HHHHHHHHHHHHHCCCCC--CCCCCCH-HHHHHHHHHHHHCCCHHHHHHHH
T ss_conf 999999999998608810--4202588-89999999998676868889999
No 437
>TIGR00497 hsdM type I restriction-modification system, M subunit; InterPro: IPR004546 There are four classes of restriction endonucleases: types I, II,III and IV. All types of enzymes recognise specific short DNA sequences and carry out the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. They differ in their recognition sequence, subunit composition, cleavage position, and cofactor requirements , , as summarised below: Type I enzymes (3.1.21.3 from EC) cleave at sites remote from recognition site; require both ATP and S-adenosyl-L-methionine to function; multifunctional protein with both restriction and methylase (2.1.1.72 from EC) activities. Type II enzymes (3.1.21.4 from EC) cleave within or at short specific distances from recognition site; most require magnesium; single function (restriction) enzymes independent of methylase. Type III enzymes (3.1.21.5 from EC) cleave at sites a short distance from recognition site; require ATP (but doesn't hydrolyse it); S-adenosyl-L-methionine stimulates reaction but is not required; exists as part of a complex with a modification methylase methylase (2.1.1.72 from EC). Type IV enzymes target methylated DNA. Type I restriction endonucleases are components of prokaryotic DNA restriction-modification mechanisms that protects the organism against invading foreign DNA. Type I enzymes have three different subunits subunits - M (modification), S (specificity) and R (restriction) - that form multifunctional enzymes with restriction (3.1.21.3 from EC), methylase (2.1.1.72 from EC) and ATPase activities , . The S subunit is required for both restriction and modification and is responsible for recognition of the DNA sequence specific for the system. The M subunit is necessary for modification, and the R subunit is required for restriction. These enzymes use S-Adenosyl-L-methionine (AdoMet) as the methyl group donor in the methylation reaction, and have a requirement for ATP. They recognize asymmetric DNA sequences split into two domains of specific sequence, one 3-4 bp long and another 4-5 bp long, separated by a nonspecific spacer 6-8 bp in length. Cleavage occurs a considerable distance from the recognition sites, rarely less than 400 bp away and up to 7000 bp away. Adenosyl residues are methylated, one on each strand of the recognition sequence. These enzymes are widespread in eubacteria and archaea. In enteric bacteria they have been subdivide into four families: types IA, IB, IC and ID. This entry represents the M subunit (HsdM) of type I restriction endonucleases such as EcoRI (3.1.21.3 from EC), which recognises the DNA sequence 5'-GAATTC. The M subunit (HsdM) functions in methylation of specific adenine residues, which is required for both restriction and modification activities , , . Methylation of specific residues prevents the host from digesting its own genome via its restriction enzymes. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence: when the target site is unmodified, the DNA is cut; when the target site is hemi-methylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0009007 site-specific DNA-methyltransferase (adenine-specific) activity, 0006306 DNA methylation.
Probab=21.15 E-value=48 Score=13.23 Aligned_cols=165 Identities=15% Similarity=0.217 Sum_probs=94.4
Q ss_pred EEEEECCCCCCCCCCCCCCC-CCEEEECCCCCCHHHHHHHHHHCCCCEEHHHHCCHHHHHHHHHHHHHCC-------CCC
Q ss_conf 48984155654211236666-6258601346882799999986168810055249899999999987502-------886
Q gi|254780634|r 212 WFEIQDEGSQIVSNLTAITN-SSQILDFCAGGGGKTLALSMLLNNKGQIHAWDNNKSRMAPIVARIKRAG-------IHN 283 (429)
Q Consensus 212 ~~~VQD~aSql~~~~l~~~~-g~~vLD~CAapGGKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g-------~~~ 283 (429)
+|..||.+..++-..+.-+. -..+.|.|||.|.-.+++...++.. +-.........+....-++-|.. ..+
T Consensus 203 ~~~p~~~~~~~~~~~~~~~~~~~~~~d~~cg~g~~~~~~~~~~g~~-~~~~~~~~g~~~~~~~~~~c~~~~~~~~~~~~~ 281 (516)
T TIGR00497 203 FFTPQDVSELLAKIALGGKDTVDDVYDPCCGSGSLLLQFSKVLGKD-KNSLKGYFGQEINLTTYNLCRLNLFLHDIDYAN 281 (516)
T ss_pred CCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHCCC-HHHHHHHCCCHHCCHHHHHHHHHHHHHHCCCCC
T ss_conf 4462558989887640452002344431047513677878773231-011222202100110344555545553123001
Q ss_pred CEEEECCCCC-C---------CCCCCCCEEEECCCCCCCHHHHHHHHH----HHHCCHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 0882155434-4---------572324678962754450444442236----6724967899999987899999999608
Q gi|254780634|r 284 VQLHSSWESL-R---------NLQEHFTTVLVDAPCSGTGTWRRRPDI----KWRLSQKNLIERTEEQKKILEESAQFVR 349 (429)
Q Consensus 284 v~~~~~~~~~-~---------~~~~~fd~vl~DaPCSg~G~~rr~Pe~----~w~~~~~~~~~~~~lQ~~iL~~a~~~lk 349 (429)
..+...+... + .....||.|+-..|-|-.-+-.++|.+ ++. ....+..-.........++...+.
T Consensus 282 ~~~~~~d~~~~~~~~~~~~~c~~~~~~~~~~~~pp~~~~w~gd~~~~~~~d~~~~-~~g~~~p~~~~d~~~~~~~~~~~~ 360 (516)
T TIGR00497 282 FNIANGDTLLDPEWEKHYVNCSDDEGFDAVVSNPPYSTKWAGDKNPNLVNDERFK-PAGTLAPNNKADLAFTLHALYYLG 360 (516)
T ss_pred CEECCCCCCCCCHHHHCCCCCCCCCCCEEEECCCCCCEEECCCCCCCEECCCCCC-CCCCCCCCCHHHHHHHHHHHHHHC
T ss_conf 0000231003620121001246777732455378742000466544200101025-332226551135888888988732
Q ss_pred CCCE--EEEEECCCCHHHCHHHHHHHHHHCC
Q ss_conf 9838--9997758882429998999998579
Q gi|254780634|r 350 PEGY--LVYITCSILPEENIQQINYFLSKNP 378 (429)
Q Consensus 350 ~gG~--lvYsTCS~~~~Ene~vv~~fL~~~~ 378 (429)
..|. ++--.-.+..+-.|..|..+|-...
T Consensus 361 ~~g~~~~~~~pg~~~~~~~~~~~~~~~~~~~ 391 (516)
T TIGR00497 361 NEGTAAIVCFPGVLYRGGKEAKIREYLVDEN 391 (516)
T ss_pred CCCCEEEEECCCHHCCCCCHHHHHHHHHHHH
T ss_conf 5664232221421103750356887764201
No 438
>PRK08072 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=21.12 E-value=53 Score=12.95 Aligned_cols=58 Identities=7% Similarity=0.112 Sum_probs=37.0
Q ss_pred CCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHCHHHHHH
Q ss_conf 44572324678962754450444442236672496789999998789999999960898389997758882429998999
Q gi|254780634|r 293 LRNLQEHFTTVLVDAPCSGTGTWRRRPDIKWRLSQKNLIERTEEQKKILEESAQFVRPEGYLVYITCSILPEENIQQINY 372 (429)
Q Consensus 293 ~~~~~~~fd~vl~DaPCSg~G~~rr~Pe~~w~~~~~~~~~~~~lQ~~iL~~a~~~lk~gG~lvYsTCS~~~~Ene~vv~~ 372 (429)
.......+|.|++| +++|+++.+.. +++++ ..++=+.=-| |.+.|+.
T Consensus 202 ~~a~~~g~diImLD-----------------Nm~p~~ik~~v-----------~~~~~-~~~~EaSGgI----~~~ni~~ 248 (277)
T PRK08072 202 REAVAAGADIIMFD-----------------NRTPDEIREFV-----------KLVPS-AIVTEASGGI----TLENLPK 248 (277)
T ss_pred HHHHHCCCCEEEEC-----------------CCCHHHHHHHH-----------HHHCC-CEEEEEECCC----CHHHHHH
T ss_conf 99986799899987-----------------98999999999-----------96169-6499998899----8999999
Q ss_pred HHHHCCCCEEE
Q ss_conf 99857997994
Q gi|254780634|r 373 FLSKNPHFSID 383 (429)
Q Consensus 373 fL~~~~~~~~~ 383 (429)
+-+..-|+-.+
T Consensus 249 yA~tGVD~IS~ 259 (277)
T PRK08072 249 YGGTGVDYISL 259 (277)
T ss_pred HHHCCCCEEEC
T ss_conf 99649999986
No 439
>TIGR03029 EpsG chain length determinant protein tyrosine kinase EpsG. The proteins in this family are homologs of the EpsG protein found in Methylobacillus strain 12S and are generally found in operons with other Eps homologs. The protein is believed to function as the protein tyrosine kinase component of the chain length regulator (along with the transmembrane component EpsF).
Probab=21.01 E-value=40 Score=13.78 Aligned_cols=24 Identities=25% Similarity=0.403 Sum_probs=16.3
Q ss_pred CCCCCEEEECCCC----CCCHHHHHHHH
Q ss_conf 2324678962754----45044444223
Q gi|254780634|r 297 QEHFTTVLVDAPC----SGTGTWRRRPD 320 (429)
Q Consensus 297 ~~~fd~vl~DaPC----Sg~G~~rr~Pe 320 (429)
.+.||.||+|.|= |-.-++.++-|
T Consensus 210 ~~~yD~IIiDTPPvl~~sDA~ila~~aD 237 (274)
T TIGR03029 210 MGDYDVVIVDTPSAEHSSDAQIVATRAR 237 (274)
T ss_pred HHHCCEEEEECCCCCCCCHHHHHHHHCC
T ss_conf 8409999993898655434999998689
No 440
>pfam06801 consensus
Probab=20.81 E-value=34 Score=14.26 Aligned_cols=10 Identities=60% Similarity=1.265 Sum_probs=5.8
Q ss_pred EEEEECCCCH
Q ss_conf 9997758882
Q gi|254780634|r 354 LVYITCSILP 363 (429)
Q Consensus 354 lvYsTCS~~~ 363 (429)
..|+|||+.|
T Consensus 87 ~ty~~csllp 96 (96)
T pfam06801 87 FTYRTCSLLP 96 (96)
T ss_pred CCCEEEECCC
T ss_conf 3210200389
No 441
>pfam04669 DUF579 Protein of unknown function (DUF579). This is a eukaryotic family of uncharacterized proteins.
Probab=20.72 E-value=54 Score=12.89 Aligned_cols=12 Identities=42% Similarity=0.897 Sum_probs=7.6
Q ss_pred CCCCCEEEECCC
Q ss_conf 232467896275
Q gi|254780634|r 297 QEHFTTVLVDAP 308 (429)
Q Consensus 297 ~~~fd~vl~DaP 308 (429)
+.++|+|++|+|
T Consensus 110 ~~~WDvi~VD~P 121 (187)
T pfam04669 110 KEKWDRIFVDAP 121 (187)
T ss_pred CCCCCEEEEECC
T ss_conf 570668998089
No 442
>PRK04841 transcriptional regulator MalT; Provisional
Probab=20.69 E-value=54 Score=12.89 Aligned_cols=28 Identities=14% Similarity=0.214 Sum_probs=14.5
Q ss_pred HHHHHHHHHHCCCCEEEEEECCCCHHHCHHHHH
Q ss_conf 999999996089838999775888242999899
Q gi|254780634|r 339 KILEESAQFVRPEGYLVYITCSILPEENIQQIN 371 (429)
Q Consensus 339 ~iL~~a~~~lk~gG~lvYsTCS~~~~Ene~vv~ 371 (429)
+.|..|..+..|.|.+- .+-+|++.+..
T Consensus 752 ~~l~~AL~lA~~~g~vr-----~Fld~g~~l~~ 779 (903)
T PRK04841 752 RALLEALKLANRTGFIS-----HFLIEGEAMAQ 779 (903)
T ss_pred HHHHHHHHHHHHCCCCH-----HHHHCCHHHHH
T ss_conf 99999999761468762-----99765857999
No 443
>pfam06306 CgtA Beta-1,4-N-acetylgalactosaminyltransferase (CgtA). This family consists of several beta-1,4-N-acetylgalactosaminyltransferase proteins from Campylobacter jejuni.
Probab=20.53 E-value=54 Score=12.87 Aligned_cols=12 Identities=17% Similarity=0.202 Sum_probs=5.3
Q ss_pred CEEEECCCCCCC
Q ss_conf 678962754450
Q gi|254780634|r 301 TTVLVDAPCSGT 312 (429)
Q Consensus 301 d~vl~DaPCSg~ 312 (429)
+..++++||-.+
T Consensus 228 ~~~~l~~~gD~~ 239 (347)
T pfam06306 228 EGEILKAPGDCL 239 (347)
T ss_pred CCCCCCCCCCEE
T ss_conf 732016887658
No 444
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=20.26 E-value=55 Score=12.83 Aligned_cols=135 Identities=16% Similarity=0.141 Sum_probs=84.6
Q ss_pred CCCCEEEECCCCCCHHHHHHHHHHCCCCEEHHHHCCHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCCEEEECCCC
Q ss_conf 66625860134688279999998616881005524989999999998750288608821554344572324678962754
Q gi|254780634|r 230 TNSSQILDFCAGGGGKTLALSMLLNNKGQIHAWDNNKSRMAPIVARIKRAGIHNVQLHSSWESLRNLQEHFTTVLVDAPC 309 (429)
Q Consensus 230 ~~g~~vLD~CAapGGKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~~~~~~~~~~~fd~vl~DaPC 309 (429)
.+-..++.+.|.=|-=-.+|-.++.. ..+.|+|+++.-.+.++..+... .+......-+....+||.|+..
T Consensus 42 ~~ikSilE~GcNIGlNL~ALk~L~P~-~~l~gIEIN~~A~~~lk~~~~~~-----~i~n~SIld~~~~~~~DLv~t~--- 112 (204)
T TIGR03587 42 PKIASILELGANIGMNLAALKRLLPF-KHIYGVEINEYAVEKAKAYLPNI-----NIIQGSLFDPFKDNFFDLVLTK--- 112 (204)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHCCC-CEEEEEECCHHHHHHHHHHCCCC-----EEEECCCCCCCCCCCEEEEEEE---
T ss_conf 88882689668847769999874874-40499953999999998658972-----6996533466778742389983---
Q ss_pred CCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHH-----C------HHHHHHHHHHCC
Q ss_conf 45044444223667249678999999878999999996089838999775888242-----9------998999998579
Q gi|254780634|r 310 SGTGTWRRRPDIKWRLSQKNLIERTEEQKKILEESAQFVRPEGYLVYITCSILPEE-----N------IQQINYFLSKNP 378 (429)
Q Consensus 310 Sg~G~~rr~Pe~~w~~~~~~~~~~~~lQ~~iL~~a~~~lk~gG~lvYsTCS~~~~E-----n------e~vv~~fL~~~~ 378 (429)
||+ -+..|+. |...=..|...+.++ .|+.---+..|.+ . -+-...||.+.|
T Consensus 113 ---GVL-------IHinP~~---L~~vy~~l~~~s~ky-----ili~EYynp~p~~i~YRG~~~~LfKrDFa~~~~~~~~ 174 (204)
T TIGR03587 113 ---GVL-------IHINPDN---LPTAYRELYRCSNRY-----ILIAEYYNPSPVEISYRGNSGRLWKRDFAGEMMDRYP 174 (204)
T ss_pred ---EEE-------EEECHHH---HHHHHHHHHHHHCCE-----EEEEEECCCCCEEEEECCCCCCEECCCHHHHHHHHCC
T ss_conf ---089-------9978899---999999999852055-----9999942899646730487684333430799997588
Q ss_pred CCEEEECCCCCCC
Q ss_conf 9799414300222
Q gi|254780634|r 379 HFSIDSIIDDWNQ 391 (429)
Q Consensus 379 ~~~~~~~~~~~~~ 391 (429)
++++++....|..
T Consensus 175 ~lklvdygF~y~~ 187 (204)
T TIGR03587 175 DLKLVDYGFPYHR 187 (204)
T ss_pred CCEEEECCEEEEC
T ss_conf 9579861317761
No 445
>PRK10458 DNA cytosine methylase; Provisional
Probab=20.23 E-value=55 Score=12.83 Aligned_cols=16 Identities=19% Similarity=0.052 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHCCHHH
Q ss_conf 4444223667249678
Q gi|254780634|r 314 TWRRRPDIKWRLSQKN 329 (429)
Q Consensus 314 ~~rr~Pe~~w~~~~~~ 329 (429)
.+-..+|.+|.+++.-
T Consensus 318 iLe~~vd~KY~lS~kl 333 (470)
T PRK10458 318 LLDPVVDAKYILTPVL 333 (470)
T ss_pred CCCCCCCCCEEECHHH
T ss_conf 2436678743467678
No 446
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=20.14 E-value=55 Score=12.81 Aligned_cols=23 Identities=17% Similarity=0.091 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHH---HCCCC
Q ss_conf 999999878999999996---08983
Q gi|254780634|r 330 LIERTEEQKKILEESAQF---VRPEG 352 (429)
Q Consensus 330 ~~~~~~lQ~~iL~~a~~~---lk~gG 352 (429)
..++..+|.+||..+-.. +++||
T Consensus 443 ~pev~~~wmqIL~~vP~Svl~L~~~~ 468 (620)
T COG3914 443 TPEVFALWMQILSAVPNSVLLLKAGG 468 (620)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEECCC
T ss_conf 87999999999984898579982689
No 447
>PRK06096 molybdenum transport protein ModD; Provisional
Probab=20.08 E-value=55 Score=12.80 Aligned_cols=70 Identities=17% Similarity=0.264 Sum_probs=40.6
Q ss_pred EEEECCCCCCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHH
Q ss_conf 88215543445723246789627544504444422366724967899999987899999999608983899977588824
Q gi|254780634|r 285 QLHSSWESLRNLQEHFTTVLVDAPCSGTGTWRRRPDIKWRLSQKNLIERTEEQKKILEESAQFVRPEGYLVYITCSILPE 364 (429)
Q Consensus 285 ~~~~~~~~~~~~~~~fd~vl~DaPCSg~G~~rr~Pe~~w~~~~~~~~~~~~lQ~~iL~~a~~~lk~gG~lvYsTCS~~~~ 364 (429)
++.+-+.........+|.|++| +++|+++.+.++.=.. ..| ..++=+.=-|
T Consensus 195 Ev~tl~~~~ea~~~gaD~IlLD-----------------nmsp~~l~~av~~~~~--------~~~-~~~lEaSGGI--- 245 (284)
T PRK06096 195 EADTPKEAIAALRAQPDVLQLD-----------------KFSPQQATEIAQIAPS--------LAP-HCTLALTGGI--- 245 (284)
T ss_pred EECCHHHHHHHHHCCCCEEEEC-----------------CCCHHHHHHHHHHHHH--------HCC-CEEEEEECCC---
T ss_conf 8099999999985799999968-----------------9899999999999872--------179-7799998999---
Q ss_pred HCHHHHHHHHHHCCCCEEEE
Q ss_conf 29998999998579979941
Q gi|254780634|r 365 ENIQQINYFLSKNPHFSIDS 384 (429)
Q Consensus 365 Ene~vv~~fL~~~~~~~~~~ 384 (429)
|.+.|+.+.+..-|+.+..
T Consensus 246 -~~~ni~~yA~tGVD~i~ts 264 (284)
T PRK06096 246 -NLTTLKNYLDCGIRLFITS 264 (284)
T ss_pred -CHHHHHHHHHCCCCEEEEC
T ss_conf -9999999998099999828
No 448
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=20.05 E-value=55 Score=12.80 Aligned_cols=83 Identities=19% Similarity=0.224 Sum_probs=50.1
Q ss_pred CCCCCEEEECCCCCCHHHHHHHHHHCCCCEEHHHHCCHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCCEEEECCC
Q ss_conf 66662586013468827999999861688100552498999999999875028860882155434457232467896275
Q gi|254780634|r 229 ITNSSQILDFCAGGGGKTLALSMLLNNKGQIHAWDNNKSRMAPIVARIKRAGIHNVQLHSSWESLRNLQEHFTTVLVDAP 308 (429)
Q Consensus 229 ~~~g~~vLD~CAapGGKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~~~~~~~~~~~fd~vl~DaP 308 (429)
...+.+||=+-||--+|+...+-...+...|+-.+.+++|.+.|.+.+.. .+.....+. .......+|.|+ =
T Consensus 119 ~~~~k~vlIlGaGGaarai~~al~~~g~~~i~i~nR~~~~a~~l~~~~~~----~~~~~~~~~-~~~~~~~~diiI---n 190 (275)
T PRK00258 119 DLKGKRILLLGAGGAARAVILPLLELGVAEITIVNRTVERAEELAELFGE----GVQALGLDE-LAGELADFDLII---N 190 (275)
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHCC----CCCEEEHHH-HHHCCCCCCEEE---E
T ss_conf 85687599988871079999999976999899995899999999998356----762753787-543044577799---6
Q ss_pred CCCCHHHHHHH
Q ss_conf 44504444422
Q gi|254780634|r 309 CSGTGTWRRRP 319 (429)
Q Consensus 309 CSg~G~~rr~P 319 (429)
||..|+-...|
T Consensus 191 aTp~Gm~~~~~ 201 (275)
T PRK00258 191 TTSAGMSGELP 201 (275)
T ss_pred CCCCCCCCCCC
T ss_conf 57777778865
Done!