HHsearch alignment for GI: 254780634 and conserved domain: pfam01170
>pfam01170 UPF0020 Putative RNA methylase family UPF0020. This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains.
Probab=98.65 E-value=3.7e-07 Score=68.37 Aligned_cols=124 Identities=19% Similarity=0.253 Sum_probs=91.6
Q ss_pred CCCCCCCCCCCEEEECCCCCCHHHHHHHHHHCCCCEEHHHHCCHHHHHHHHHHHHHCCCCC-CEEEECCCC-CCCCCCCC
Q ss_conf 2112366666258601346882799999986168810055249899999999987502886-088215543-44572324
Q gi|254780634|r 223 VSNLTAITNSSQILDFCAGGGGKTLALSMLLNNKGQIHAWDNNKSRMAPIVARIKRAGIHN-VQLHSSWES-LRNLQEHF 300 (429)
Q Consensus 223 ~~~~l~~~~g~~vLD~CAapGGKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~-v~~~~~~~~-~~~~~~~f 300 (429)
T Consensus 20 l~~la~~~~g~~vlDP~CGSGtilIE-Aa~~~~~~~~~G~Did~~~v~~A~~N~~~~g~~~~i~~~~~D~~~l~~~~~~~ 98 (171)
T pfam01170 20 MVNLAGWKPGDPLLDPFCGSGTILIE-AALMGANVALYGSDIDRRMVRGARINAEAAGVGDKIEFVQADAADLPLLNGSV 98 (171)
T ss_pred HHHHHCCCCCCEEEECCCCCCHHHHH-HHHHHCCCCCEEEECCHHHHHHHHHHHHHHCCCCCEEEEECCHHHCCCCCCCC
T ss_conf 99985899999788689987899999-99961358953675879999999999998289984699976665387987883
Q ss_pred CEEEECCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCH
Q ss_conf 678962754450444442236672496789999998789999999960898389997758882
Q gi|254780634|r 301 TTVLVDAPCSGTGTWRRRPDIKWRLSQKNLIERTEEQKKILEESAQFVRPEGYLVYITCSILP 363 (429)
Q Consensus 301 d~vl~DaPCSg~G~~rr~Pe~~w~~~~~~~~~~~~lQ~~iL~~a~~~lk~gG~lvYsTCS~~~ 363 (429)
T Consensus 99 d~Iv~nPPYG---~---------r~--~~~~~~~~ly~~~~~~~~~~~~--g~~~~i~~~~~~ 145 (171)
T pfam01170 99 DTIVTDPPYG---I---------RI--GSKGALEKLYPAFLDEAKRVLR--GRLVFATPEKKD 145 (171)
T ss_pred EEEEECCCCC---C---------CC--CCHHHHHHHHHHHHHHHHHHCC--CCEEEEEECCHH
T ss_conf 1899889820---1---------13--6545699999999999998689--978999968689