HHsearch alignment for GI: 254780634 and conserved domain: pfam01861

>pfam01861 DUF43 Protein of unknown function DUF43. This family includes archaebacterial proteins of unknown function. All the members are 350-400 amino acids long.
Probab=94.33  E-value=0.39  Score=27.43  Aligned_cols=88  Identities=17%  Similarity=0.170  Sum_probs=58.7

Q ss_pred             CCCCEEHHHHCCHHHHHHHHHHHHHCCCCCCEEEECCCCC---CCCCCCCCEEEECCCCCCCHH---HHHHHH-------
Q ss_conf             1688100552498999999999875028860882155434---457232467896275445044---444223-------
Q gi|254780634|r  254 NNKGQIHAWDNNKSRMAPIVARIKRAGIHNVQLHSSWESL---RNLQEHFTTVLVDAPCSGTGT---WRRRPD-------  320 (429)
Q Consensus       254 ~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~~~~~---~~~~~~fd~vl~DaPCSg~G~---~rr~Pe-------  320 (429)
T Consensus        65 ~~p~~I~VvDIDeRll~fI~~~A~~~gl-~i~~~~~DlR~pLP~~l~~~FD~f~TDPPyT~~G~~LFlsRgi~~Lk~eg~  143 (243)
T pfam01861        65 GLPKRIAVVDIDERLIKFIERVAKEEGL-KIEAFVHDLRNPLPEDLKHKFDVFITDPPETVDGLKAFLGRGIATLKGEGC  143 (243)
T ss_pred             CCCCEEEEEECCHHHHHHHHHHHHHCCC-CEEEEEECCCCCCCHHHHCCCCEEECCCCCCHHHHHHHHHHHHHHHCCCCC
T ss_conf             8985489996758999999999997499-716887410148999996167989718998778999999999998266885


Q ss_pred             HH---HHCCHHHHHHHHHHHHHHHH
Q ss_conf             66---72496789999998789999
Q gi|254780634|r  321 IK---WRLSQKNLIERTEEQKKILE  342 (429)
Q Consensus       321 ~~---w~~~~~~~~~~~~lQ~~iL~  342 (429)
T Consensus       144 agYfglt~~esS~~kw~~~Qk~l~~  168 (243)
T pfam01861       144 AGYFGITHRESSLDKWREIQRMLIE  168 (243)
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHHH
T ss_conf             2268764260149999999999998