HHsearch alignment for GI: 254780634 and conserved domain: pfam01861
>pfam01861 DUF43 Protein of unknown function DUF43. This family includes archaebacterial proteins of unknown function. All the members are 350-400 amino acids long.
Probab=94.33 E-value=0.39 Score=27.43 Aligned_cols=88 Identities=17% Similarity=0.170 Sum_probs=58.7
Q ss_pred CCCCEEHHHHCCHHHHHHHHHHHHHCCCCCCEEEECCCCC---CCCCCCCCEEEECCCCCCCHH---HHHHHH-------
Q ss_conf 1688100552498999999999875028860882155434---457232467896275445044---444223-------
Q gi|254780634|r 254 NNKGQIHAWDNNKSRMAPIVARIKRAGIHNVQLHSSWESL---RNLQEHFTTVLVDAPCSGTGT---WRRRPD------- 320 (429)
Q Consensus 254 ~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~~~~~---~~~~~~fd~vl~DaPCSg~G~---~rr~Pe------- 320 (429)
T Consensus 65 ~~p~~I~VvDIDeRll~fI~~~A~~~gl-~i~~~~~DlR~pLP~~l~~~FD~f~TDPPyT~~G~~LFlsRgi~~Lk~eg~ 143 (243)
T pfam01861 65 GLPKRIAVVDIDERLIKFIERVAKEEGL-KIEAFVHDLRNPLPEDLKHKFDVFITDPPETVDGLKAFLGRGIATLKGEGC 143 (243)
T ss_pred CCCCEEEEEECCHHHHHHHHHHHHHCCC-CEEEEEECCCCCCCHHHHCCCCEEECCCCCCHHHHHHHHHHHHHHHCCCCC
T ss_conf 8985489996758999999999997499-716887410148999996167989718998778999999999998266885
Q ss_pred HH---HHCCHHHHHHHHHHHHHHHH
Q ss_conf 66---72496789999998789999
Q gi|254780634|r 321 IK---WRLSQKNLIERTEEQKKILE 342 (429)
Q Consensus 321 ~~---w~~~~~~~~~~~~lQ~~iL~ 342 (429)
T Consensus 144 agYfglt~~esS~~kw~~~Qk~l~~ 168 (243)
T pfam01861 144 AGYFGITHRESSLDKWREIQRMLIE 168 (243)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHHH
T ss_conf 2268764260149999999999998