HHsearch alignment for GI: 254780634 and conserved domain: pfam02384

>pfam02384 N6_Mtase N-6 DNA Methylase. Restriction-modification (R-M) systems protect a bacterial cell against invasion of foreign DNA by endonucleolytic cleavage of DNA that lacks a site specific modification. The R-M system is a complex containing three polypeptides: M (this family), S (pfam01420), and R. This family consists of N-6 adenine-specific DNA methylase EC:2.1.1.72 from Type I and Type IC restriction systems. These methylases have the same sequence specificity as their corresponding restriction enzymes.
Probab=98.52  E-value=6.5e-07  Score=66.76  Aligned_cols=168  Identities=15%  Similarity=0.175  Sum_probs=102.9

Q ss_pred             CEEEEECCCCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHCC------CCEEHHHHCCHHHHHHHHHHHHHCCCC--
Q ss_conf             548984155654211236666625860134688279999998616------881005524989999999998750288--
Q gi|254780634|r  211 GWFEIQDEGSQIVSNLTAITNSSQILDFCAGGGGKTLALSMLLNN------KGQIHAWDNNKSRMAPIVARIKRAGIH--  282 (429)
Q Consensus       211 G~~~VQD~aSql~~~~l~~~~g~~vLD~CAapGGKt~~la~~~~~------~g~i~A~D~~~~Rl~~l~~~~~r~g~~--  282 (429)
T Consensus        26 GeffTPr~Vv~lmv~ll~p~~~~~V~DPacGtGgfLi~a~~~i~~~~~~~~~~~i~G~E~~~~~~~la~mNm~lhgi~~~  105 (312)
T pfam02384        26 GEFYTPREVSKLIVELLEPKPGESIYDPACGSGGFLIQADKFVKSHDGDTNDISIYGQELNPTTYRLARMNMILHGIEYN  105 (312)
T ss_pred             CEECCCHHHHHHHHHHHCCCCCCEEECCCCCCCHHHHHHHHHHHHHCCCCCCCEEECCCCCHHHHHHHHHHHHHHCCCCC
T ss_conf             63588789999999982899999882168773378999999999843785565563688998999999999998479887


Q ss_pred             CCEEEECCCCCC---CCCCCCCEEEECCCCCCCHHHHHHH--HHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf             608821554344---5723246789627544504444422--36672496789999998789999999960898389997
Q gi|254780634|r  283 NVQLHSSWESLR---NLQEHFTTVLVDAPCSGTGTWRRRP--DIKWRLSQKNLIERTEEQKKILEESAQFVRPEGYLVYI  357 (429)
Q Consensus       283 ~v~~~~~~~~~~---~~~~~fd~vl~DaPCSg~G~~rr~P--e~~w~~~~~~~~~~~~lQ~~iL~~a~~~lk~gG~lvYs  357 (429)
T Consensus       106 ~~~i~~gdsl~~~~~~~~~kfD~IlsNPPFg~k~~~~~~~~~~~~~~~~--~~~~~~~~e~~Fiqh~l~~Lk~~GraaiV  183 (312)
T pfam02384       106 DFGIRHGDTLLSPKFEEDKKFDVVVANPPFNQKWDANDNLENDPRFRAY--GVPPKSNADFAFLQHIIYHLSPNGRAAVV  183 (312)
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCHHCC--CCCCCCCHHHHHHHHHHHHCCCCCEEEEE
T ss_conf             4552147765576766545511898378646676654321027211036--87888744299999999856999769999


Q ss_pred             E--CCCCHHHCHHHHHHHHHHCCCC
Q ss_conf             7--5888242999899999857997
Q gi|254780634|r  358 T--CSILPEENIQQINYFLSKNPHF  380 (429)
Q Consensus       358 T--CS~~~~Ene~vv~~fL~~~~~~  380 (429)
T Consensus       184 lp~g~Lf~~~~e~~iR~~lle~~~l  208 (312)
T pfam02384       184 LPNGVLFRGGAEGDIRKALVEKDLI  208 (312)
T ss_pred             ECCCCCCCCCHHHHHHHHHHHCCCE
T ss_conf             5582310465088999999975976