HHsearch alignment for GI: 254780634 and conserved domain: pfam05175

>pfam05175 MTS Methyltransferase small domain. This domain is found in ribosomal RNA small subunit methyltransferase C as well as other methyltransferases .

Probab=99.35  E-value=9.8e-12  Score=99.51  Aligned_cols=132  Identities=17%  Similarity=0.184  Sum_probs=110.3

Q ss_pred             CCCCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHCCCCEEHHHHCCHHHHHHHHHHHHHCCCCCCEEEECCCCCCCC
Q ss_conf             15565421123666662586013468827999999861688100552498999999999875028860882155434457
Q gi|254780634|r  217 DEGSQIVSNLTAITNSSQILDFCAGGGGKTLALSMLLNNKGQIHAWDNNKSRMAPIVARIKRAGIHNVQLHSSWESLRNL  296 (429)
Q Consensus       217 D~aSql~~~~l~~~~g~~vLD~CAapGGKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~~~~~~~~  296 (429)
T Consensus        17 D~Gt~lLl~~l~~~~~g~vLDlGcG~G~i~~~la~~~p-~~~v~~vDi~~~Al~~a~~N~~~n~l~~v~v~~~D~~~~~~   95 (170)
T pfam05175        17 DIGSRLLLSHLPKPLGGKVLDLGCGYGVLGAALAKRSP-DLEVTMVDINARALESARANLAANGLENGEVFWSDLYSAVE   95 (170)
T ss_pred             CHHHHHHHHCCCCCCCCCEEEECCCCCHHHHHHHHHCC-CCEEEECHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCC
T ss_conf             98999999708977899499977648298999999789-86798515449999999999998099848999744666577


Q ss_pred             CCCCCEEEECCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHC
Q ss_conf             2324678962754450444442236672496789999998789999999960898389997758882429
Q gi|254780634|r  297 QEHFTTVLVDAPCSGTGTWRRRPDIKWRLSQKNLIERTEEQKKILEESAQFVRPEGYLVYITCSILPEEN  366 (429)
Q Consensus       297 ~~~fd~vl~DaPCSg~G~~rr~Pe~~w~~~~~~~~~~~~lQ~~iL~~a~~~lk~gG~lvYsTCS~~~~En  366 (429)
T Consensus        96 ~~~fD~IvsNPP~--------------h~g~---~~~~~~~~~~i~~A~~~L~pgG~l~~V~n~~l~y~~  148 (170)
T pfam05175        96 PGKFDLIISNPPF--------------HAGK---ATDYDVAQRFIAGAARHLKPGGELWIVANRHLGYPS  148 (170)
T ss_pred             CCCEEEEEECCCC--------------CCCC---CCCHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCHH
T ss_conf             8866089989772--------------1142---032899999999999961649799999989999479