HHsearch alignment for GI: 254780634 and conserved domain: pfam08242

Probab=98.09  E-value=1.1e-05  Score=58.50  Aligned_cols=96  Identities=18%  Similarity=0.254  Sum_probs=70.7

Q ss_pred             EECCCCCCHHHHHHHHHHCCCCEEHHHHCCHHHHHHHHHHHHHCCCCCCEEEE-C-CCCCCCCCCCCCEEEECCCCCCCH
Q ss_conf             60134688279999998616881005524989999999998750288608821-5-543445723246789627544504
Q gi|254780634|r  236 LDFCAGGGGKTLALSMLLNNKGQIHAWDNNKSRMAPIVARIKRAGIHNVQLHS-S-WESLRNLQEHFTTVLVDAPCSGTG  313 (429)
Q Consensus       236 LD~CAapGGKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~-~-~~~~~~~~~~fd~vl~DaPCSg~G  313 (429)
T Consensus         1 LDvGcG~G~~~~~l~~~~~-~~~v~giD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~------~~   73 (98)
T pfam08242         1 LDIGCGTGTLLRALLEALP-GLEYTGVDISPAALEAAAERLAALGLLDAVRVRLDVLDAIDLDPGSFDVVVA------SN   73 (98)
T ss_pred             CCCCCCCCHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHHCCCCCHHHEEECCCHHHCCCCCCCEEEE------CC
T ss_conf             9886337999999998789-9889998598899999999998713453111000000022203589889961------04


Q ss_pred             HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCEE
Q ss_conf             44442236672496789999998789999999960898389
Q gi|254780634|r  314 TWRRRPDIKWRLSQKNLIERTEEQKKILEESAQFVRPEGYL  354 (429)
Q Consensus       314 ~~rr~Pe~~w~~~~~~~~~~~~lQ~~iL~~a~~~lk~gG~l  354 (429)
T Consensus        74 vl~~~~~----------------~~~~l~~~~r~LkpgG~l   98 (98)
T pfam08242        74 VLHHLAD----------------PRAVLRNLRRLLKPGGVL   98 (98)
T ss_pred             CHHHCCC----------------HHHHHHHHHHHCCCCCCC
T ss_conf             1772589----------------999999999974999899