HHsearch alignment for GI: 254780634 and conserved domain: pfam08704
>pfam08704 GCD14 tRNA methyltransferase complex GCD14 subunit. GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA.
Probab=99.07 E-value=1.4e-09 Score=84.90 Aligned_cols=120 Identities=14% Similarity=0.306 Sum_probs=97.3
Q ss_pred CCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHCCCCEEHHHHCCHHHHHHHHHHHHHCCCC-CCEEEECCCCC----CCC
Q ss_conf 4211236666625860134688279999998616881005524989999999998750288-60882155434----457
Q gi|254780634|r 222 IVSNLTAITNSSQILDFCAGGGGKTLALSMLLNNKGQIHAWDNNKSRMAPIVARIKRAGIH-NVQLHSSWESL----RNL 296 (429)
Q Consensus 222 l~~~~l~~~~g~~vLD~CAapGGKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~-~v~~~~~~~~~----~~~ 296 (429)
T Consensus 93 ~I~~~ldi~PG~~VlEaGtGSGsLT~~Laravgp~G~v~t~E~~e~r~~~A~~n~~~~g~~~~v~~~~rDv~~~gf~~~~ 172 (309)
T pfam08704 93 LIIMMLELKPGSVVCESGTGSGSLSHAIARTVAPTGHLYTFEFHEQRADKAREEFREHGLDSLVTVTHRDVCKSGFDTEV 172 (309)
T ss_pred HHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHCCCCCCEEEEECCHHCCCCCCCC
T ss_conf 99998098999999983678429999999974888659998447899999999998749875058898520013666445
Q ss_pred CCCCCEEEECCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHC-CCCEEE-EEECCCCHHHCHHHHHHHH
Q ss_conf 23246789627544504444422366724967899999987899999999608-983899-9775888242999899999
Q gi|254780634|r 297 QEHFTTVLVDAPCSGTGTWRRRPDIKWRLSQKNLIERTEEQKKILEESAQFVR-PEGYLV-YITCSILPEENIQQINYFL 374 (429)
Q Consensus 297 ~~~fd~vl~DaPCSg~G~~rr~Pe~~w~~~~~~~~~~~~lQ~~iL~~a~~~lk-~gG~lv-YsTCS~~~~Ene~vv~~fL 374 (429)
T Consensus 173 ~~~~D~VfLDlp~------------PW---------------~ai~~~~~~Lk~~Gg~l~~f~P~i-------eQv~r~~ 218 (309)
T pfam08704 173 SNKADAVFLDLPA------------PW---------------EAIPHAAKALKVEGGRLCSFSPCI-------EQVQRTC 218 (309)
T ss_pred CCCCCEEEECCCC------------HH---------------HHHHHHHHHHCCCCCEEEEECCCH-------HHHHHHH
T ss_conf 6643589975899------------79---------------988999986068996899991989-------9999999
Q ss_pred H
Q ss_conf 8
Q gi|254780634|r 375 S 375 (429)
Q Consensus 375 ~ 375 (429)
T Consensus 219 ~ 219 (309)
T pfam08704 219 L 219 (309)
T ss_pred H
T ss_conf 9