BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= gi|254780634|ref|YP_003065047.1| NOL1/NOP2/SUN family signature
protein [Candidatus Liberibacter asiaticus str. psy62]
(429 letters)
Database: las_proteome
1233 sequences; 328,796 total letters
Searching...................................................done
>gi|254780634|ref|YP_003065047.1| NOL1/NOP2/SUN family signature protein [Candidatus Liberibacter
asiaticus str. psy62]
Length = 429
Score = 894 bits (2311), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 429/429 (100%), Positives = 429/429 (100%)
Query: 1 MRLGGQIAAAIEILKDIRTHKKPITNSLKDWGMSHRFAGSSDRASISNIVHDVLRKYLSS 60
MRLGGQIAAAIEILKDIRTHKKPITNSLKDWGMSHRFAGSSDRASISNIVHDVLRKYLSS
Sbjct: 1 MRLGGQIAAAIEILKDIRTHKKPITNSLKDWGMSHRFAGSSDRASISNIVHDVLRKYLSS 60
Query: 61 AYIMDSDDPESLVYAVIMKDWDIPWEKMLSMLKEDLFSPPLPKESVIKSFHSRQLENAPL 120
AYIMDSDDPESLVYAVIMKDWDIPWEKMLSMLKEDLFSPPLPKESVIKSFHSRQLENAPL
Sbjct: 61 AYIMDSDDPESLVYAVIMKDWDIPWEKMLSMLKEDLFSPPLPKESVIKSFHSRQLENAPL 120
Query: 121 HIQGNIPQWLQSSFQSYFKDTWLKEAKSLSMRAPLDLRTNTLKVNRCKLFKNLCHYGVHH 180
HIQGNIPQWLQSSFQSYFKDTWLKEAKSLSMRAPLDLRTNTLKVNRCKLFKNLCHYGVHH
Sbjct: 121 HIQGNIPQWLQSSFQSYFKDTWLKEAKSLSMRAPLDLRTNTLKVNRCKLFKNLCHYGVHH 180
Query: 181 SSISRFGLRIPATKGKSRLPNVMNDITFQRGWFEIQDEGSQIVSNLTAITNSSQILDFCA 240
SSISRFGLRIPATKGKSRLPNVMNDITFQRGWFEIQDEGSQIVSNLTAITNSSQILDFCA
Sbjct: 181 SSISRFGLRIPATKGKSRLPNVMNDITFQRGWFEIQDEGSQIVSNLTAITNSSQILDFCA 240
Query: 241 GGGGKTLALSMLLNNKGQIHAWDNNKSRMAPIVARIKRAGIHNVQLHSSWESLRNLQEHF 300
GGGGKTLALSMLLNNKGQIHAWDNNKSRMAPIVARIKRAGIHNVQLHSSWESLRNLQEHF
Sbjct: 241 GGGGKTLALSMLLNNKGQIHAWDNNKSRMAPIVARIKRAGIHNVQLHSSWESLRNLQEHF 300
Query: 301 TTVLVDAPCSGTGTWRRRPDIKWRLSQKNLIERTEEQKKILEESAQFVRPEGYLVYITCS 360
TTVLVDAPCSGTGTWRRRPDIKWRLSQKNLIERTEEQKKILEESAQFVRPEGYLVYITCS
Sbjct: 301 TTVLVDAPCSGTGTWRRRPDIKWRLSQKNLIERTEEQKKILEESAQFVRPEGYLVYITCS 360
Query: 361 ILPEENIQQINYFLSKNPHFSIDSIIDDWNQLYDLKNHPSLFIENGCCVLTPFLTNTDGF 420
ILPEENIQQINYFLSKNPHFSIDSIIDDWNQLYDLKNHPSLFIENGCCVLTPFLTNTDGF
Sbjct: 361 ILPEENIQQINYFLSKNPHFSIDSIIDDWNQLYDLKNHPSLFIENGCCVLTPFLTNTDGF 420
Query: 421 FFCRLKRHT 429
FFCRLKRHT
Sbjct: 421 FFCRLKRHT 429
>gi|254780666|ref|YP_003065079.1| Fmu (Sun) domain protein [Candidatus Liberibacter asiaticus str.
psy62]
Length = 445
Score = 90.1 bits (222), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 53/178 (29%), Positives = 89/178 (50%), Gaps = 17/178 (9%)
Query: 208 FQRGWFEIQDEGSQIVSNLTAITNSSQILDFCAGGGGKTLALSMLLNNKGQIHAWDNNKS 267
F G + +QD + I L N+ +LD CA GGKT + L+ + ++ A D +K
Sbjct: 218 FAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKT---AQLIVSGAKVTALDVSKR 274
Query: 268 RMAPIVARIKRAGIHNVQLHSSWESLRNL-------QEHFTTVLVDAPCSGTGTWRRRPD 320
R+ + + R LH E + + ++ F VLVDAPCS TGT RR PD
Sbjct: 275 RLEKLRCNLDR-------LHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPD 327
Query: 321 IKWRLSQKNLIERTEEQKKILEESAQFVRPEGYLVYITCSILPEENIQQINYFLSKNP 378
+ W ++++ Q+K+L + FV+P G +V+ CS+ +++ + + L +P
Sbjct: 328 VLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSP 385
>gi|255764467|ref|YP_003064798.2| Type I secretion system ATPase, PrtD [Candidatus Liberibacter
asiaticus str. psy62]
Length = 565
Score = 26.9 bits (58), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 43/89 (48%), Gaps = 14/89 (15%)
Query: 269 MAPIVARIKRAGIHNVQLHSSWESLRNLQEHFTTVLVDAPCSGTGTWRRRPDIKWRLSQ- 327
MAP+ I NV L S + L NL + FTT+L + ++ P I RLS
Sbjct: 279 MAPLEQIINSKKSLNVGL-KSLKYLINLND-FTTLL------NSSDSKKEP-ISMRLSNN 329
Query: 328 ----KNLIERTEEQKKILEESAQFVRPEG 352
KN++ R ++ +++ ++ F PEG
Sbjct: 330 TITAKNIVFRDKKTSRLICQNLSFTIPEG 358
>gi|254780684|ref|YP_003065097.1| flagellum-specific ATP synthase [Candidatus Liberibacter asiaticus
str. psy62]
Length = 438
Score = 25.8 bits (55), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 15/56 (26%), Positives = 27/56 (48%), Gaps = 4/56 (7%)
Query: 197 SRLPNVMNDITFQRGWFEIQDEGSQIVSNLTAITNSSQILDFCAGGGGKTLALSML 252
S++P MN ++G+ G +++ T + + +I F G GK+ LSM
Sbjct: 130 SKVPPAMNRQRVEKGF----KTGIRVIDIFTPLCHGQRIGVFAGSGIGKSTLLSMF 181
>gi|254780466|ref|YP_003064879.1| putative modification methylase [Candidatus Liberibacter asiaticus
str. psy62]
Length = 375
Score = 24.6 bits (52), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 18/87 (20%), Positives = 36/87 (41%), Gaps = 13/87 (14%)
Query: 325 LSQKNLIERTEEQKKILEESAQFVRPEGYLVYITCSILPEENIQ----------QINYFL 374
+SQKN + E Q I E + ++ V LP +++ Q+N L
Sbjct: 1 MSQKNSLAINENQNSIFEWKDKIIKGNSISV---LEKLPAKSVDLIFADPPYNLQLNGQL 57
Query: 375 SKNPHFSIDSIIDDWNQLYDLKNHPSL 401
+ H +D++ D W++ + + +
Sbjct: 58 YRPDHSLVDAVTDSWDKFSSFEAYDAF 84
>gi|254780615|ref|YP_003065028.1| F0F1 ATP synthase subunit beta [Candidatus Liberibacter asiaticus
str. psy62]
Length = 478
Score = 23.5 bits (49), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 11/44 (25%), Positives = 21/44 (47%)
Query: 219 GSQIVSNLTAITNSSQILDFCAGGGGKTLALSMLLNNKGQIHAW 262
G +++ ++ +I F G GKT+ + L+NN + H
Sbjct: 136 GIKVIDLISPYQKGGKIGLFGGAGVGKTVLIMELINNVAKAHGG 179
>gi|254780142|ref|YP_003064555.1| DNA-directed RNA polymerase subunit beta' [Candidatus Liberibacter
asiaticus str. psy62]
Length = 1398
Score = 23.1 bits (48), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 7/17 (41%), Positives = 11/17 (64%)
Query: 364 EENIQQINYFLSKNPHF 380
E+ ++ YF+ KN HF
Sbjct: 1175 EDGVEPAEYFIPKNKHF 1191
Database: las_proteome
Posted date: Jun 5, 2011 6:30 PM
Number of letters in database: 328,796
Number of sequences in database: 1233
Lambda K H
0.320 0.135 0.417
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 280,392
Number of Sequences: 1233
Number of extensions: 11504
Number of successful extensions: 44
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 34
Number of HSP's gapped (non-prelim): 13
length of query: 429
length of database: 328,796
effective HSP length: 76
effective length of query: 353
effective length of database: 235,088
effective search space: 82986064
effective search space used: 82986064
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 40 (20.0 bits)