Query         gi|254780635|ref|YP_003065048.1| hypothetical protein CLIBASIA_02610 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 412
No_of_seqs    152 out of 369
Neff          7.2 
Searched_HMMs 23785
Date          Tue May 31 18:29:25 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780635.hhm -d /home/congqian_1/database/pdb/pdb70.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 3pf0_A Imelysin-like protein;  100.0       0       0  382.3  26.2  301   23-404    48-357 (364)
  2 3oyv_A Imelysin; outer membran 100.0 1.5E-37 6.2E-42  242.7  19.1  191  194-401     6-215 (361)
  3 3oyv_A Imelysin; outer membran 100.0 7.8E-36 3.3E-40  232.3  11.3  150    9-187   209-359 (361)
  4 1xou_A ESPA; coiled coil, heli  17.8      36  0.0015   12.3   3.2   32  319-357   118-149 (192)
  5 2w9y_A CE-FAR-7, fatty acid/re  16.8      38  0.0016   12.1   6.8   34  324-357    51-84  (140)
  6 3iv1_A Tumor susceptibility ge   9.6      63  0.0027   10.8   6.9   60  321-394     1-60  (78)
  7 2d1l_A Metastasis suppressor p   7.5      77  0.0032   10.3   4.3   44   25-78     18-61  (253)
  8 1luc_B Bacterial luciferase; m   6.4      90  0.0038    9.9   5.7   15  169-183   106-120 (324)
  9 2jbw_A Dhpon-hydrolase, 2,6-di   6.1      95   0.004    9.8   5.4   61   41-104    56-116 (386)
 10 3fav_B ESAT-6, 6 kDa early sec   6.0      96   0.004    9.7   4.7   65  198-262     6-71  (94)

No 1  
>3pf0_A Imelysin-like protein; putative metalloendopeptidase, structural genomics, joint CE structural genomics, JCSG; 2.15A {Psychrobacter arcticus}
Probab=100.00  E-value=0  Score=382.28  Aligned_cols=301  Identities=14%  Similarity=0.218  Sum_probs=246.4

Q ss_pred             CCCHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH--CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH
Q ss_conf             6788999988788-6798899999999999999999994--999889999999999999977765654015402210001
Q gi|254780635|r   23 NVSLEKVLQNYAT-IAHAKYEDALMCARTLDSAIETLVT--TPNKKNLENARLQWIRARIPYQQSEVYRFGNKIVDTWDK   99 (412)
Q Consensus        23 ~~~~~~vl~~yad-iv~~~Y~d~~~~a~~L~~ai~af~a--~Pt~~~L~aak~aw~~Ar~~we~~E~f~fGpa~~~~~~~   99 (412)
                      ..+.+.+|+||+| ||+|+|.++..++.+|+.++++||.  .|++++|+++|.+|+.+|.+||++|+|+|||+...++.+
T Consensus        48 ~~~~~~~L~~~ad~vIiP~y~~l~~~a~~L~~a~~a~c~~~~p~~~~L~aar~aw~~a~~~Wq~~e~~~fGPa~~~~~~~  127 (364)
T 3pf0_A           48 AETEKTYLTHVANDMVIPAYADAAKQSDLLHDLAQKHCQKAPVSGDELQALRDQWLVLAQAWASAEMVNFGPATASMSNL  127 (364)
T ss_dssp             HHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHGGGCSBCHHHHHHHHHHHHHHHHHHHHHTTCCSGGGGGGGHHH
T ss_pred             HHHHHHHHHHHHCCEEHHCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
T ss_conf             22289999997137530369999999999999999985057998899999999999999999998716078566512555


Q ss_pred             HHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCHHHHHHHHHCCCCCCHHHCCHHHHHHHH
Q ss_conf             10016576210001123334443333322233336433435522222320397888766641666510211278999986
Q gi|254780635|r  100 KVNAWPLDEGFIDYVDSSYGKENEENNLYTANIIANSKIIVNEKEIDLSIISPDLLRKLHRANGIDTNITTGYHVIEFLL  179 (412)
Q Consensus       100 ~in~WPl~~~~iD~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~d~~~it~~~l~~~~e~~~~~~~~~~GfhAiEyLL  179 (412)
                      +|++||++++.|+..........                         ..++++.+       ...+++.||||||||||
T Consensus       128 ~i~~wP~~~~~i~~~i~~~~~~~-------------------------~~~~~~~~-------~~~s~~~qGf~ALEyLL  175 (364)
T 3pf0_A          128 YINYYPDERGLVHGGVADLITAN-------------------------PALTAEQL-------ANESAVVQGIPGLEEAL  175 (364)
T ss_dssp             HHCCCCCTTCHHHHHHHHHHHHC-------------------------TTCCTGGG-------GGSCGGGSHHHHHHHHH
T ss_pred             HCCCCCCCHHHHHHHHHHHHHCC-------------------------CCCCHHHH-------CCCCHHHCCHHHHHHHH
T ss_conf             31247774037888999887426-------------------------75685664-------33345741859999997


Q ss_pred             CCCCCCCCCCCCCCCCHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC--CHHHHHHCCHHHHHHHHHH
Q ss_conf             27787776555555303432011334540456799999999999999999995203554--1057762153445999999
Q gi|254780635|r  180 WGQDLKTNVREPGNRPYTDFDIGNCTGGHCRRRVEYLKVVSKILVSDLEEMMKAWGPDG--QATKDLMKDINAGLNSIIT  257 (412)
Q Consensus       180 fg~~~~~~~~~~~~r~~~d~~~~~~t~~~~~rr~~YL~ava~~l~~~~~~l~~~W~~~~--~~~~~~~~~~~~~~~~i~~  257 (412)
                      |+++..                       ..+||.||++++.+|+.++.+|...|+++.  .+....+.+..+++..+++
T Consensus       176 f~~~~~-----------------------~~~rc~Yl~ava~~l~~~a~~l~~~W~~~~~~~~~~~~~~~~~~al~~l~~  232 (364)
T 3pf0_A          176 YANDSL-----------------------DAGQCAYVMSASSALGTRLKDIEKNWQQNAIKLLAIDKTAESDQGLNQWFN  232 (364)
T ss_dssp             HSSSSB-----------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTGGGTTTCCHHHHHHHH
T ss_pred             CCCCCC-----------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHCCCCCCCCCHHHHHHHHH
T ss_conf             688755-----------------------067889999999999999999999886274754002444460589999999


Q ss_pred             HHHHHHHHHHHHCCCCCCCCCC--CHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHH-HCHH
Q ss_conf             9999989876430022423578--843446663527289999999999999503335666543356468999975-1887
Q gi|254780635|r  258 GMTSLSYNELAGERMNLGLILH--DPEQEIDCFSDNTYASYLNDVIGIISSYTGEYIRMNGEKIHGASIHDLISH-NNRN  334 (412)
Q Consensus       258 g~~~~~~~Ev~~~Ki~~pl~~~--~pe~~Es~~S~~S~~d~~~Ni~gi~n~y~G~~~~~~g~~~~g~sl~d~l~~-~~~~  334 (412)
                      +|..+. +++++.|||.|++..  .+...++|||++|+.++.+|+.|++++|.|.            ++..++.. .+++
T Consensus       233 ~~i~~~-e~l~~~Klg~Plg~~~~~~~~~~~~~S~~S~~~i~anl~sl~~~y~g~------------~~~~~l~~~~~~~  299 (364)
T 3pf0_A          233 SLLSLV-ETMKSNAIEQPLGLSGKAKGHLPAATAGQSRAIINAKLATLNKAMTDP------------VLTAILGSNNENT  299 (364)
T ss_dssp             HHHHHH-HHHHHHTTHHHHTSSSSCCSCCTTTTTTCHHHHHHHHHHHHHHHHSCH------------HHHHHHTTSSTHH
T ss_pred             HHHHHH-HHHHHHHHCCCCCCCCCCCCCCHHHHHCCCHHHHHHHHHHHHHHHCCC------------HHHHHHHCCCCHH
T ss_conf             999999-999985642455677789876446671375999999999999997350------------0777752056588


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH-HHHHHCCCCCC
Q ss_conf             89999999999999998311113114534575404998999999999999999999999-99875287663
Q gi|254780635|r  335 LAQEINDKFSNTMKDFHILKDRAENIESFDQMISENNPEGNKIVRNLINDLITQTESLR-KIRIALDLIEP  404 (412)
Q Consensus       335 La~~i~~~f~~a~~~l~ai~~~~~~~~~~D~~i~~~~~~~~~~v~~ai~aL~~~~~~i~-~~~~~Lgl~~~  404 (412)
                      |+++|..+|+.+..+++.|+.++.          ..+..++..+..++..|   ...++ +++..|||+..
T Consensus       300 La~~I~~q~~~a~~~i~~l~~~~~----------~~d~~~~~~l~~~l~~L---~~~lk~d~~~~Lgi~~g  357 (364)
T 3pf0_A          300 VADTLSTALADTTALLAQMPEDLA----------TADKATQQELYDHLTNI---TRLIKSQLIPTLGIRVG  357 (364)
T ss_dssp             HHHHHHHHHHHHHHHHHTSCSSGG----------GSCHHHHHHHHHHHHHH---HHHHHHTHHHHTTCCSC
T ss_pred             HHHHHHHHHHHHHHHHHHCCCCHH----------CCCHHHHHHHHHHHHHH---HHHHHHHHHHHHCCCCC
T ss_conf             999999999999999983860221----------03758999999999999---99999988997194648


No 2  
>3oyv_A Imelysin; outer membrane protein, extracellular active site, metal BIN protein, structural genomics; HET: MSE; 1.25A {Bacteroides ovatus atcc 8483} PDB: 3n8u_A*
Probab=100.00  E-value=1.5e-37  Score=242.67  Aligned_cols=191  Identities=16%  Similarity=0.248  Sum_probs=160.7

Q ss_pred             CCHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCC----CCHHHHHHC-------CHHHHHHHHHHHHHHH
Q ss_conf             30343201133454045679999999999999999999520355----410577621-------5344599999999999
Q gi|254780635|r  194 RPYTDFDIGNCTGGHCRRRVEYLKVVSKILVSDLEEMMKAWGPD----GQATKDLMK-------DINAGLNSIITGMTSL  262 (412)
Q Consensus       194 r~~~d~~~~~~t~~~~~rr~~YL~ava~~l~~~~~~l~~~W~~~----~~~~~~~~~-------~~~~~~~~i~~g~~~~  262 (412)
                      +|..|+...+++..||.|||+||++++++|+.++++|.++|.++    +.|+..|.+       ++..+++.|++||+++
T Consensus         6 ~~~~~~~~~~~t~~n~~~r~~YL~av~~~l~~d~~~l~~~W~~~~~~~~~y~~~f~~~~~s~~~s~~~al~~il~g~~~~   85 (361)
T 3oyv_A            6 NPTVDPANIDYTPENASSWHNYMRNVAALLKTDATNLYNAWNSSYKGGESYASLFKAHSGSPYASALSCVEEIVDKCAEI   85 (361)
T ss_dssp             --CCCCCCCCCCTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSTTSSCHHHHHHHCCBTTBCSHHHHHHHHHHHHHHH
T ss_pred             CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHH
T ss_conf             88778655656552068899999999999999999999862657887444999986478877678999999999999999


Q ss_pred             HHHHHHHCCCCCCCCC--CC-----HHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHCHHH
Q ss_conf             8987643002242357--88-----4344666352728999999999999950333566654335646899997518878
Q gi|254780635|r  263 SYNELAGERMNLGLIL--HD-----PEQEIDCFSDNTYASYLNDVIGIISSYTGEYIRMNGEKIHGASIHDLISHNNRNL  335 (412)
Q Consensus       263 ~~~Ev~~~Ki~~pl~~--~~-----pe~~Es~~S~~S~~d~~~Ni~gi~n~y~G~~~~~~g~~~~g~sl~d~l~~~~~~L  335 (412)
                      . +||+++|||.|++.  .+     |+.+|||||+|||.||.+|++||+|+|+|+|.   | +++|+||.+||...|++|
T Consensus        86 ~-~el~~~Kig~p~g~~~~~~~~~~~~~ves~fSdnS~~d~~~N~~gi~nvy~G~~~---g-~~~g~Sl~~~v~~~~~~L  160 (361)
T 3oyv_A           86 A-NEVGTAKIGDPYNLYKAGNTEEALYAVESWYSWHSRDDYTNNIYSIRNAYYGSLD---G-NINANSLSTVIAGANSSL  160 (361)
T ss_dssp             H-HHHHHTTTHHHHHHHHTTCHHHHHHTCTTGGGTCHHHHHHHHHHHHHHHHHTCSS---S-CCCSSSHHHHHHHHCHHH
T ss_pred             H-HHHHHHHHHHHCCCCCCCCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCC---C-CCCCCCHHHHHHHHCHHH
T ss_conf             9-8873636532102566798742233431622535199999999999999717879---8-877747999998658788


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH-HHHHHCCC
Q ss_conf             9999999999999998311113114534575404998999999999999999999999-99875287
Q gi|254780635|r  336 AQEINDKFSNTMKDFHILKDRAENIESFDQMISENNPEGNKIVRNLINDLITQTESLR-KIRIALDL  401 (412)
Q Consensus       336 a~~i~~~f~~a~~~l~ai~~~~~~~~~~D~~i~~~~~~~~~~v~~ai~aL~~~~~~i~-~~~~~Lgl  401 (412)
                      +++|+++|+.++.+|++|+.|      |++.|.  +.+    .+.+++||+++...|+ +|.+.|.=
T Consensus       161 ~~~i~~~i~~a~~ai~aI~~p------F~~~i~--~~~----~~aa~da~~~l~~~L~~~~~~~~~~  215 (361)
T 3oyv_A          161 DTKIKNAIQKAAKAIQDIPQP------FRNHIP--SNE----TVAAMDACAELESILKNDLKSYIAN  215 (361)
T ss_dssp             HHHHHHHHHHHHHHHHHSCSC------GGGCTT--SHH----HHHHHHHHHHHHHHHHTHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHCCHH------HHHHCC--CHH----HHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf             999999999999999827355------998806--888----8999999999999999988988750


No 3  
>3oyv_A Imelysin; outer membrane protein, extracellular active site, metal BIN protein, structural genomics; HET: MSE; 1.25A {Bacteroides ovatus atcc 8483} PDB: 3n8u_A*
Probab=100.00  E-value=7.8e-36  Score=232.31  Aligned_cols=150  Identities=24%  Similarity=0.363  Sum_probs=121.2

Q ss_pred             HHHHHCCCCCCCCCCCCHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             999612664454666788999988788-6798899999999999999999994999889999999999999977765654
Q gi|254780635|r    9 IVFTLPSHALSIVPNVSLEKVLQNYAT-IAHAKYEDALMCARTLDSAIETLVTTPNKKNLENARLQWIRARIPYQQSEVY   87 (412)
Q Consensus         9 ~~~~~~~~~~a~~~~~~~~~vl~~yad-iv~~~Y~d~~~~a~~L~~ai~af~a~Pt~~~L~aak~aw~~Ar~~we~~E~f   87 (412)
                      ++..+.........++.+++||++|+| ||+|+|++++.++++|.+++++||++|++++|+++|.+|+.+|.+||++|+|
T Consensus       209 ~~~~~~~~~~~~~~~~~l~~vl~n~vD~vIiP~Y~~l~~~a~~L~~a~~af~a~ps~~~L~~ar~aw~~a~~~Wq~~E~~  288 (361)
T 3oyv_A          209 LKSYIANNSNNINTDAVLNPVVTQYVDAVVVPTYKSLKEKNDALYNAVIVLADNPSNSAFETACDAWITAREPWEKSEAF  288 (361)
T ss_dssp             HHHHHHCGGGSCCSHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHHHTTGGG
T ss_pred             HHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             89887503688321757999999984310077299999999999999999980999899999999999999999998877


Q ss_pred             HCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCHHHHHHHHHCCCCCCH
Q ss_conf             01540221000110016576210001123334443333322233336433435522222320397888766641666510
Q gi|254780635|r   88 RFGNKIVDTWDKKVNAWPLDEGFIDYVDSSYGKENEENNLYTANIIANSKIIVNEKEIDLSIISPDLLRKLHRANGIDTN  167 (412)
Q Consensus        88 ~fGpa~~~~~~~~in~WPl~~~~iD~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~d~~~it~~~l~~~~e~~~~~~~  167 (412)
                      +|||+...+++++||+||++++.|++...+.......                      ....+       .+.....++
T Consensus       289 ~fGPa~~~~~~~~i~~wP~~~~~i~~~i~~~~~~~~~----------------------~~~~~-------~~~~~~~s~  339 (361)
T 3oyv_A          289 LFGPVDEMGLDPNMDSWPLDQNAIVQILNSQSWSDLE----------------------WSEGD-------DEAAVESAQ  339 (361)
T ss_dssp             CCGGGGSTTHHHHHHCSSCCHHHHHHHHTCHHHHHCC----------------------CCTTC-------CSCSSCCCG
T ss_pred             HCCCHHHHCHHHHHHCCCCCHHHHHHHHHCCCCCCCC----------------------CCCCC-------CHHHCCCCH
T ss_conf             5371655245766432768744898987412013322----------------------23346-------033213214


Q ss_pred             HHCCHHHHHHHHCCCCCCCC
Q ss_conf             21127899998627787776
Q gi|254780635|r  168 ITTGYHVIEFLLWGQDLKTN  187 (412)
Q Consensus       168 ~~~GfhAiEyLLfg~~~~~~  187 (412)
                      .+||||||||||||++.+++
T Consensus       340 ~~~Gf~ALEyLLfgdG~pr~  359 (361)
T 3oyv_A          340 NVRGFHTLEFLLYKNGEPRK  359 (361)
T ss_dssp             GGSHHHHHHHHHEETTEECC
T ss_pred             HHCCHHHHHHHHHCCCCCCC
T ss_conf             40186999999927998777


No 4  
>1xou_A ESPA; coiled coil, helix bundle, heterodimer, structural protein/chaperone complex; 2.80A {Escherichia coli} SCOP: a.231.1.1
Probab=17.85  E-value=36  Score=12.29  Aligned_cols=32  Identities=6%  Similarity=0.072  Sum_probs=18.4

Q ss_pred             CCCCCHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             356468999975188789999999999999998311113
Q gi|254780635|r  319 IHGASIHDLISHNNRNLAQEINDKFSNTMKDFHILKDRA  357 (412)
Q Consensus       319 ~~g~sl~d~l~~~~~~La~~i~~~f~~a~~~l~ai~~~~  357 (412)
                      +.+.++++|+.+.+       ..++..++.+|+..-...
T Consensus       118 I~~~~Iddy~~~L~-------kG~LqaVKaALd~~snr~  149 (192)
T 1xou_A          118 ITISGIDNINAQLG-------AGDLQTVKAAISAKANNL  149 (192)
T ss_dssp             -------------------------------------CH
T ss_pred             CCCCCHHHHHHHCC-------CCHHHHHHHHHHHHCCCC
T ss_conf             56356888764547-------210999999987001444


No 5  
>2w9y_A CE-FAR-7, fatty acid/retinol binding protein protein 7, isoform A, confirmed by transcript...; lipid transport; HET: CSX; 1.80A {Caenorhabditis elegans}
Probab=16.75  E-value=38  Score=12.13  Aligned_cols=34  Identities=18%  Similarity=0.247  Sum_probs=24.9

Q ss_pred             HHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             8999975188789999999999999998311113
Q gi|254780635|r  324 IHDLISHNNRNLAQEINDKFSNTMKDFHILKDRA  357 (412)
Q Consensus       324 l~d~l~~~~~~La~~i~~~f~~a~~~l~ai~~~~  357 (412)
                      +.+.|+.++|.|..++..-......+++.+...+
T Consensus        51 ~i~alK~Ksp~L~~k~e~l~~~~k~Ki~~L~pea   84 (140)
T 2w9y_A           51 MIDEVSKKHPELGKRLATVLEGNKKRLDGLSPAA   84 (140)
T ss_dssp             HHHHHHHHCHHHHHHHHHHHHHHHHTTTTCCHHH
T ss_pred             HHHHHHHHCHHHHHHHHHHHHHHHHHHHCCCHHH
T ss_conf             9999998698989999999999999988279889


No 6  
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=9.57  E-value=63  Score=10.82  Aligned_cols=60  Identities=17%  Similarity=0.354  Sum_probs=41.6

Q ss_pred             CCCHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             64689999751887899999999999999983111131145345754049989999999999999999999999
Q gi|254780635|r  321 GASIHDLISHNNRNLAQEINDKFSNTMKDFHILKDRAENIESFDQMISENNPEGNKIVRNLINDLITQTESLRK  394 (412)
Q Consensus       321 g~sl~d~l~~~~~~La~~i~~~f~~a~~~l~ai~~~~~~~~~~D~~i~~~~~~~~~~v~~ai~aL~~~~~~i~~  394 (412)
                      |+||   +.++...|-.++...|....+-++.+...-      +.     -..|...++..|.-|......++.
T Consensus         1 ~ASL---lSAVeDKLrrrlkE~~~q~qaEl~sL~~t~------~e-----L~~G~~kl~~~i~rl~~E~~~l~~   60 (78)
T 3iv1_A            1 GSSL---ISAVSDKLRWRMKEEMDRAQAELNALKRTE------ED-----LKKGHQKLEEMVTRLDQEVAEVDK   60 (78)
T ss_dssp             CCCH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HH-----HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HH-----HHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             9128---999999999999999998877899999899------99-----997679999999999988999999


No 7  
>2d1l_A Metastasis suppressor protein 1; IRSP53, actin binding, IMD, protein binding; HET: MSE; 1.85A {Mus musculus}
Probab=7.52  E-value=77  Score=10.30  Aligned_cols=44  Identities=20%  Similarity=0.246  Sum_probs=31.1

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q ss_conf             889999887886798899999999999999999994999889999999999999
Q gi|254780635|r   25 SLEKVLQNYATIAHAKYEDALMCARTLDSAIETLVTTPNKKNLENARLQWIRAR   78 (412)
Q Consensus        25 ~~~~vl~~yadiv~~~Y~d~~~~a~~L~~ai~af~a~Pt~~~L~aak~aw~~Ar   78 (412)
                      ..+.++.+.- .-+|.|.++.+.++.+..++.+.+.         |-.+|..|.
T Consensus        18 ~~q~i~~d~k-~s~p~~~~lv~~~~ky~~aL~a~~~---------Aa~~f~dA~   61 (253)
T 2d1l_A           18 LFQTIISDMK-GSYPVWEDFINKAGKLQSQLRTTVV---------AAAAFLDAF   61 (253)
T ss_dssp             HHHHHHHHHH-TCHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHH
T ss_pred             HHHHHHHHHH-HCCHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHH
T ss_conf             9999999887-3438899999989999999999999---------999999999


No 8  
>1luc_B Bacterial luciferase; monooxygenase, flavoprotein; 1.50A {Vibrio harveyi} SCOP: c.1.16.1 PDB: 1brl_B 1bsl_A 1xkj_A 3fgc_B*
Probab=6.36  E-value=90  Score=9.91  Aligned_cols=15  Identities=0%  Similarity=0.102  Sum_probs=10.8

Q ss_pred             HCCHHHHHHHHCCCC
Q ss_conf             112789999862778
Q gi|254780635|r  169 TTGYHVIEFLLWGQD  183 (412)
Q Consensus       169 ~~GfhAiEyLLfg~~  183 (412)
                      -+|+...|+-.||.+
T Consensus       106 G~G~~~~~~~~~g~~  120 (324)
T 1luc_B          106 SDCEKSADMRFFNRP  120 (324)
T ss_dssp             ECCCCHHHHHHTTCC
T ss_pred             CCCCCHHHHHHCCCC
T ss_conf             677668888751865


No 9  
>2jbw_A Dhpon-hydrolase, 2,6-dihydroxy-pseudo-oxynicotine hydrolase; alpha/beta hydrolase, META-cleavage pathway; 2.1A {Arthrobacter nicotinovorans} SCOP: c.69.1.41
Probab=6.07  E-value=95  Score=9.75  Aligned_cols=61  Identities=15%  Similarity=0.111  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCC
Q ss_conf             9999999999999999999499988999999999999997776565401540221000110016
Q gi|254780635|r   41 YEDALMCARTLDSAIETLVTTPNKKNLENARLQWIRARIPYQQSEVYRFGNKIVDTWDKKVNAW  104 (412)
Q Consensus        41 Y~d~~~~a~~L~~ai~af~a~Pt~~~L~aak~aw~~Ar~~we~~E~f~fGpa~~~~~~~~in~W  104 (412)
                      |..+...++.+.+..+...+   .++...|+.+|+.|-..|...+.+.+-|.....+...+..+
T Consensus        56 ~~~w~~~a~~~~~~a~~~~~---~g~~~sA~~~~~~Aa~~y~~a~~~~~d~~~~~~~~~~~~~~  116 (386)
T 2jbw_A           56 FDYWMSLANEYEQEAERKVA---LGHDLSAGELLMSAALCAQYAQFLWFDERRQKGQARKVELY  116 (386)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHHHHHHTTCCSTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHH---CCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHH
T ss_conf             99999999999999999998---79988999999999999996036358956899999999999


No 10 
>3fav_B ESAT-6, 6 kDa early secretory antigenic target; complex, operon structure, four-helical-bundle, coiled-coil, WXG-motif, secreted; 2.15A {Mycobacterium tuberculosis} PDB: 1wa8_B
Probab=6.03  E-value=96  Score=9.72  Aligned_cols=65  Identities=14%  Similarity=0.224  Sum_probs=0.0

Q ss_pred             HHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-CCHHHHHHCCHHHHHHHHHHHHHHH
Q ss_conf             3201133454045679999999999999999999520355-4105776215344599999999999
Q gi|254780635|r  198 DFDIGNCTGGHCRRRVEYLKVVSKILVSDLEEMMKAWGPD-GQATKDLMKDINAGLNSIITGMTSL  262 (412)
Q Consensus       198 d~~~~~~t~~~~~rr~~YL~ava~~l~~~~~~l~~~W~~~-~~~~~~~~~~~~~~~~~i~~g~~~~  262 (412)
                      ||.........-.....-+...-+.|...+..|...|.+. ...+.......+.....+...+..+
T Consensus         6 d~a~~~~~a~~l~~~~~~i~~~l~~L~~~v~~l~~~W~G~A~~af~~~~~~W~~~~~~~~~~L~~i   71 (94)
T 3fav_B            6 NFAGIEAAASAIQGNVTSIHSLLDEGKQSLTKLAAAWGGSGSEAYQGVQQKWDATATELNNALQNL   71 (94)
T ss_dssp             ---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHTGGGGTCTTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             699999999999999999999999999999999856143478999999999999999999999999


Done!