RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddA 
           21,609 sequences; 6,263,737 total letters

Searching..................................................done

Query= gi|254780635|ref|YP_003065048.1| hypothetical protein
CLIBASIA_02610 [Candidatus Liberibacter asiaticus str. psy62]
         (412 letters)



>gnl|CDD|33290 COG3487, IrpA, Uncharacterized iron-regulated protein [Inorganic
           ion transport and metabolism].
          Length = 446

 Score =  469 bits (1208), Expect = e-133
 Identities = 202/402 (50%), Positives = 263/402 (65%), Gaps = 4/402 (0%)

Query: 4   ITIISIVFTLPSHALSIVP---NVSLEKVLQNYATIAHAKYEDALMCARTLDSAIETLVT 60
           IT  +      S A +  P         V+++YA IAHAKYED+L  A+ L  AI+ L+ 
Sbjct: 26  ITAAASATLTASAAFAAAPADAATDAAAVIKHYADIAHAKYEDSLTTAQALQKAIDALLA 85

Query: 61  TPNKKNLENARLQWIRARIPYQQSEVYRFGNKIVDTWDKKVNAWPLDEGFIDYVDSSYGK 120
            P+ + L+ AR  W+ AR+PYQQSEVYRFGN IVD W+ +VNAWPLDEG IDYV  SYG 
Sbjct: 86  KPSAETLKAAREAWLAARVPYQQSEVYRFGNAIVDDWEGQVNAWPLDEGLIDYVAKSYGH 145

Query: 121 ENEENNLYTANIIANSKIIVNEKEIDLSIISPDLLRKLHRANGIDTNITTGYHVIEFLLW 180
           E++EN L TANIIAN++I +   ++D   I+P+LL  L+ A G + N+ TGYH IEFLLW
Sbjct: 146 ESDENELATANIIANTEIKIGGTKVDAKEITPELLASLNEAGGSEANVATGYHAIEFLLW 205

Query: 181 GQDLKTNVREPGNRPYTDFDIGNCTGGHCRRRVEYLKVVSKILVSDLEEMMKAWGPDGQA 240
           GQDL       GNRPYTD+D   CT G+C RR  YLK  + +LVSDLEEM+K W  DG A
Sbjct: 206 GQDLNGTGPGAGNRPYTDYDQKACTNGNCDRRAAYLKAATSLLVSDLEEMVKQWKEDGNA 265

Query: 241 TKDLMK-DINAGLNSIITGMTSLSYNELAGERMNLGLILHDPEQEIDCFSDNTYASYLND 299
            K L++ D   GL  I+TGM SLSY ELAGERM LGL LHDPE+E DCFSDNT+ S+L D
Sbjct: 266 RKQLVEEDPKTGLRKILTGMGSLSYGELAGERMKLGLELHDPEEEHDCFSDNTHNSHLYD 325

Query: 300 VIGIISSYTGEYIRMNGEKIHGASIHDLISHNNRNLAQEINDKFSNTMKDFHILKDRAEN 359
            IGI ++Y G Y R++G  + G S+ DL++  +    +E+  K + T+     +  RAE 
Sbjct: 326 AIGIRNAYLGSYTRVDGSVVKGPSLADLVAAKDAAANKELKAKLAATVAKMQAIVKRAEK 385

Query: 360 IESFDQMISENNPEGNKIVRNLINDLITQTESLRKIRIALDL 401
            E++DQMI+E N  GN  V+  I+ LI QT+S+ +   AL L
Sbjct: 386 GEAYDQMIAEGNAAGNATVQAAIDALIAQTKSIERAAGALGL 427


>gnl|CDD|37531 KOG2320, KOG2320, KOG2320, RAS effector RIN1 (contains VPS domain)
           [Intracellular trafficking, secretion, and vesicular
           transport].
          Length = 651

 Score = 30.4 bits (68), Expect = 0.94
 Identities = 22/118 (18%), Positives = 40/118 (33%), Gaps = 9/118 (7%)

Query: 258 GMTSLSYNELAGERMNLGLILHDPEQEIDCFSDNTYASYLNDVIGI------ISSYTGEY 311
           G  S+  +  AG   N  L      +E D  SD       +  +        +SS +  +
Sbjct: 198 GSDSVGVSTPAGS--NDSLPTSPSLEEKDTLSDPRVPKKPSTSLMTPLTRSQLSSSSSSF 255

Query: 312 -IRMNGEKIHGASIHDLISHNNRNLAQEINDKFSNTMKDFHILKDRAENIESFDQMIS 368
              +  E+ H     +L           + D  S+    +H   D A  ++S  Q ++
Sbjct: 256 KSFLGPERQHYKESAELEQDKMTYFGSLVQDYVSDYEDVWHRPTDSASMLQSIRQALT 313


>gnl|CDD|39458 KOG4257, KOG4257, KOG4257, Focal adhesion tyrosine kinase FAK,
           contains FERM domain [Signal transduction mechanisms].
          Length = 974

 Score = 28.1 bits (62), Expect = 4.1
 Identities = 23/109 (21%), Positives = 37/109 (33%), Gaps = 18/109 (16%)

Query: 318 KIHGASIHDLISHNNRNLAQEIND------KFSNTMKDFHILKDRAE-----------NI 360
           KI GA    LI+ ++  LA+ + D      +  N      I+                 +
Sbjct: 291 KISGAPEPLLITLSSLELAESMADLIDGYCRLYNQRDSSFIIHPIKRGETSLPAIPNLAL 350

Query: 361 ESFDQMISENNPEGNKIVRNLINDLITQTESLRKIRIALDLIEPNRVIG 409
              +  IS   P         I D    T ++R   +  +LI   R+IG
Sbjct: 351 TMHESTISPKTPNETDDYAE-IGDETYSTPTVRNYELRRELITLKRLIG 398


>gnl|CDD|176552 cd08610, GDPD_GDE6, Glycerophosphodiester phosphodiesterase domain
           of mammalian glycerophosphodiester phosphodiesterase
           GDE6 and similar proteins.  This subfamily corresponds
           to the glycerophosphodiester phosphodiesterase domain
           (GDPD) present in mammalian GDE6 (also known as
           glycerophosphodiester phosphodiesterase
           domain-containing protein 4 (GDPD4)) and their metazoan
           homologs. Mammalian GDE6 is a transmembrane protein
           predominantly expressed in the spermatocytes of testis.
           Although the specific physiological function of
           mammalian GDE6 has not been elucidated, its different
           pattern of tissue distribution suggests it might play a
           critical role in the completion of meiosis during male
           germ cell differentiation.
          Length = 316

 Score = 28.3 bits (63), Expect = 4.3
 Identities = 13/34 (38%), Positives = 21/34 (61%), Gaps = 2/34 (5%)

Query: 159 HRANGIDTNITTGYHVIEFLLWGQDLK--TNVRE 190
           H A+G++T++T  Y  + FL+    LK  TN+ E
Sbjct: 49  HGAHGLETDVTLSYDGVPFLMHDFTLKRTTNIGE 82


>gnl|CDD|36513 KOG1299, KOG1299, KOG1299, Vacuolar sorting protein VPS45/Stt10
           (Sec1 family) [Intracellular trafficking, secretion, and
           vesicular transport].
          Length = 549

 Score = 27.6 bits (61), Expect = 7.3
 Identities = 24/99 (24%), Positives = 40/99 (40%), Gaps = 11/99 (11%)

Query: 292 TYASYLNDVIGI------ISSYTGEYIRMNGEKIHGASIHDLISHNNRNLA-QEINDKFS 344
           TY + +++++GI      +S      I  + E++  +S  D    NN      EI     
Sbjct: 232 TYQAMVHELLGIKNNRVDLSKVPS--IPKDLEEVVLSSEQDPFFKNNMYANFGEIGSNIK 289

Query: 345 NTMKDFHILKDRAENIESFDQM--ISENNPEGNKIVRNL 381
             + +F        NIES   M    E+ PE  K+  N+
Sbjct: 290 QLVSEFQFKTKTNSNIESIADMKNFVEDYPEFKKMSGNV 328


>gnl|CDD|35776 KOG0556, KOG0556, KOG0556, Aspartyl-tRNA synthetase [Translation,
           ribosomal structure and biogenesis].
          Length = 533

 Score = 27.2 bits (60), Expect = 8.1
 Identities = 13/47 (27%), Positives = 21/47 (44%), Gaps = 3/47 (6%)

Query: 326 DLISHNNRNLAQEINDKFSNTMKDFHILKDRAENIESFDQMISENNP 372
           DL + + + L Q + +K+     DF+IL      +  F  M    NP
Sbjct: 399 DLSTESEKKLGQLVREKYDT---DFYILDKYPLAVRPFYTMPDPENP 442


>gnl|CDD|39679 KOG4479, KOG4479, KOG4479, Transcription factor e(y)2
           [Transcription].
          Length = 92

 Score = 27.3 bits (60), Expect = 8.5
 Identities = 15/53 (28%), Positives = 29/53 (54%), Gaps = 5/53 (9%)

Query: 351 HILKDRAENIESFDQMISENNPEGNKIVRNLINDLITQTESLRKIRIALDLIE 403
           +I+ ++  +  + DQ+ +E  P+     R L+ D++ + E L +IR ALD   
Sbjct: 43  NIIMEKGVDNITVDQLAAEITPKA----RALVPDVV-KKELLLRIRTALDKHA 90


>gnl|CDD|112923 pfam04129, Vps52, Vps52 / Sac2 family.  Vps52 complexes with Vps53
           and Vps54 to form a multi- subunit complex involved in
           regulating membrane trafficking events.
          Length = 509

 Score = 27.0 bits (60), Expect = 10.0
 Identities = 9/27 (33%), Positives = 16/27 (59%)

Query: 324 IHDLISHNNRNLAQEINDKFSNTMKDF 350
            ++ +  NNR+LA E+ D + +TM   
Sbjct: 176 FYEFLLDNNRSLALELRDAYIDTMNKI 202


  Database: CddA
    Posted date:  Feb 4, 2011  9:38 PM
  Number of letters in database: 6,263,737
  Number of sequences in database:  21,609
  
Lambda     K      H
   0.317    0.135    0.392 

Gapped
Lambda     K      H
   0.267   0.0759    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 4,952,322
Number of extensions: 265467
Number of successful extensions: 644
Number of sequences better than 10.0: 1
Number of HSP's gapped: 643
Number of HSP's successfully gapped: 20
Length of query: 412
Length of database: 6,263,737
Length adjustment: 96
Effective length of query: 316
Effective length of database: 4,189,273
Effective search space: 1323810268
Effective search space used: 1323810268
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 59 (26.4 bits)