RPS-BLAST 2.2.22 [Sep-27-2009]
Database: pdb70
24,244 sequences; 5,693,230 total letters
Searching..................................................done
Query= gi|254780635|ref|YP_003065048.1| hypothetical protein
CLIBASIA_02610 [Candidatus Liberibacter asiaticus str. psy62]
(412 letters)
>3pf0_A Imelysin-like protein; putative metalloendopeptidase, structural
genomics, joint CE structural genomics, JCSG; 2.15A
{Psychrobacter arcticus}
Length = 364
Score = 115 bits (289), Expect = 1e-26
Identities = 49/372 (13%), Positives = 105/372 (28%), Gaps = 84/372 (22%)
Query: 27 EKVLQNYA-TIAHAKYEDALMCARTLDSAIETLV--TTPNKKNLENARLQWIRARIPYQQ 83
+ L + A + Y DA + L + + L+ R QW+ +
Sbjct: 52 KTYLTHVANDMVIPAYADAAKQSDLLHDLAQKHCQKAPVSGDELQALRDQWLVLAQAWAS 111
Query: 84 SEVYRFGNKIVDTWDKKVNAWPLDEGFIDYVDSSYGKENEENNLYTANIIANSKIIVNEK 143
+E+ FG + +N +P + G + + N TA +AN +V
Sbjct: 112 AEMVNFGPATASMSNLYINYYPDERGLVHGGVADLITANPA---LTAEQLANESAVV--- 165
Query: 144 EIDLSIISPDLLRKLHRANGIDTNITTGYHVIEFLLWGQDLKTNVREPGNRPYTDFDIGN 203
G +E L+ D
Sbjct: 166 --------------------------QGIPGLEEALYANDSLDA---------------- 183
Query: 204 CTGGHCRRRVEYLKVVSKILVSDLEEMMKAW--GPDGQATKDLMKDINAGLNSIITGMTS 261
+ Y+ S L + L+++ K W D + + GLN + S
Sbjct: 184 -------GQCAYVMSASSALGTRLKDIEKNWQQNAIKLLAIDKTAESDQGLNQWFNSLLS 236
Query: 262 LSYNELAGERMN--LGLILHDPEQEIDCFSDNTYASYLNDVIGIISSYTGEYIRMNGEKI 319
L + + LGL + + A + + + T +
Sbjct: 237 L-VETMKSNAIEQPLGLSGKAKGHLPAATAGQSRAIINAKLATLNKAMTDPVLT------ 289
Query: 320 HGASIHDLISHNNRNLAQEINDKFSNTMKDFHILKDRAENIESFDQMISENNPEGNKIVR 379
L S+N +A ++ ++T + + ++ + + +
Sbjct: 290 -----AILGSNNENTVADTLSTALADTTA----------LLAQMPEDLATADKATQQELY 334
Query: 380 NLINDLITQTES 391
+ + ++ +S
Sbjct: 335 DHLTNITRLIKS 346
>3oyv_A Imelysin; outer membrane protein, extracellular active site, metal
BIN protein, structural genomics; HET: MSE; 1.25A
{Bacteroides ovatus atcc 8483} PDB: 3n8u_A*
Length = 361
Score = 107 bits (269), Expect = 4e-24
Identities = 34/171 (19%), Positives = 60/171 (35%), Gaps = 30/171 (17%)
Query: 12 TLPSHALSIVPNVSLEKVLQNYA-TIAHAKYEDALMCARTLDSAIETLVTTPNKKNLENA 70
+ +++ +I + L V+ Y + Y+ L +A+ L P+ E A
Sbjct: 212 YIANNSNNINTDAVLNPVVTQYVDAVVVPTYKSLKEKNDALYNAVIVLADNPSNSAFETA 271
Query: 71 RLQWIRARIPYQQSEVYRFGNKIVDTWDKKVNAWPLDEGFIDYVDSSYGKENEENNLYTA 130
WI AR P+++SE + FG D +++WPLD+ I + +
Sbjct: 272 CDAWITAREPWEKSEAFLFGPVDEMGLDPNMDSWPLDQNAIVQILN-------------- 317
Query: 131 NIIANSKIIVNEKEIDLSIISPDLLRKLHRANGIDTNITTGYHVIEFLLWG 181
S + A G+H +EFLL+
Sbjct: 318 ---------------SQSWSDLEWSEGDDEAAVESAQNVRGFHTLEFLLYK 353
Score = 107 bits (268), Expect = 5e-24
Identities = 33/224 (14%), Positives = 74/224 (33%), Gaps = 36/224 (16%)
Query: 192 GNRPYTDFDIGNCTGGHCRRRVEYLKVVSKILVSDLEEMMKAWGPDGQ-----------A 240
+ P D + T + Y++ V+ +L +D + AW +
Sbjct: 4 DDNPTVDPANIDYTPENASSWHNYMRNVAALLKTDATNLYNAWNSSYKGGESYASLFKAH 63
Query: 241 TKDLMKDINAGLNSIITGMTSLSYNELAGERMN--LGLILHDPEQEI-----DCFSDNTY 293
+ + + I+ ++ E+ ++ L +E +S ++
Sbjct: 64 SGSPYASALSCVEEIVDKCAEIAN-EVGTAKIGDPYNLYKAGNTEEALYAVESWYSWHSR 122
Query: 294 ASYLNDVIGIISSYTGEYIRMNGEKIHGASIHDLISHNNRNLAQEINDKFSNTMKDFHIL 353
Y N++ I ++Y G I+ S+ +I+ N +L +I +
Sbjct: 123 DDYTNNIYSIRNAYYGSL----DGNINANSLSTVIAGANSSLDTKIKNAIQKAA------ 172
Query: 354 KDRAENI-ESFDQMISENNPEG-----NKIVRNLINDLITQTES 391
++I + F I N ++ L NDL + +
Sbjct: 173 -KAIQDIPQPFRNHIPSNETVAAMDACAELESILKNDLKSYIAN 215
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl reductase,
beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 2006
Score = 46.5 bits (110), Expect = 1e-05
Identities = 63/400 (15%), Positives = 119/400 (29%), Gaps = 158/400 (39%)
Query: 110 FIDYVDSSYGKENEENNLYTANIIANSKIIVNE--------KEI-----DLSIISPDLLR 156
F+ YV S E + + + + + E +I L + L
Sbjct: 64 FLGYVSSL--VEPSKVGQFDQVL----NLCLTEFENCYLEGNDIHALAAKLLQENDTTLV 117
Query: 157 KLHRANGIDTNITTGYHVIEFLLWGQDLKTNVREP--------GN-RPYTDFDIGNCTGG 207
K I + GN + F GG
Sbjct: 118 KTKEL------IKNYITARIMA---KRPFDKKSNSALFRAVGEGNAQLVAIF------GG 162
Query: 208 ----HCRRRVEYLKVVSKILVSDLEEMMKAWGPDGQATKDLMKDINAGLNSIITGMTSLS 263
+Y + +L ++ + + L+ D+ + ++ L
Sbjct: 163 QGNTD-----DYFE--------ELRDLYQTYHV-------LVGDL---IKFSAETLSELI 199
Query: 264 YNELAGERM-NLGL-I---LHDPEQEIDCFSDNTYASYLNDV------IGIIS--SYT-- 308
L E++ GL I L +P D YL + IG+I Y
Sbjct: 200 RTTLDAEKVFTQGLNILEWLENPSNTPDK-------DYLLSIPISCPLIGVIQLAHYVVT 252
Query: 309 --------GEYIRMNGEKIHGASIHD--LIS-------------HNNRNLAQEI------ 339
GE +R + GA+ H L++ + A +
Sbjct: 253 AKLLGFTPGE-LR---SYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGV 308
Query: 340 --NDKFSNTMKDFHILKDRAENIE------------SFDQM---ISENN---PEGNKIVR 379
+ + NT IL+D EN E + +Q+ +++ N P G ++
Sbjct: 309 RCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEI 368
Query: 380 NLIND----LIT-QTESL-------RKIRIALDLIEPNRV 407
+L+N +++ +SL RK + A ++ +R+
Sbjct: 369 SLVNGAKNLVVSGPPQSLYGLNLTLRKAK-APSGLDQSRI 407
Score = 45.3 bits (107), Expect = 2e-05
Identities = 52/282 (18%), Positives = 82/282 (29%), Gaps = 136/282 (48%)
Query: 14 PSHALSIVPNVSLEKVLQNYATIAHAKYEDALMCARTL--DSAIE-TLVTTPNKKNLE-- 68
PS LSI N++ E+ +Q+Y + L +E +LV KNL
Sbjct: 335 PSPMLSIS-NLTQEQ-VQDY--VNK--------TNSHLPAGKQVEISLVNGA--KNLVVS 380
Query: 69 ---------NARLQWIRA-------RIPYQQSEVYRFGNKIVDTWDKKVNAWPLDEGFID 112
N L+ +A RIP+ + ++ +F N+ + P+ F
Sbjct: 381 GPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKL-KFSNRFL----------PVASPF-- 427
Query: 113 YVDSSYGKENEENNLYTANIIANSKIIVNEKEIDLSIISPDLLRKLHRANGI---DTNIT 169
S L A+ I + + ++S + D+ I DT
Sbjct: 428 --HSHL--------LVP----ASDLINKDLVKNNVSFNAKDI--------QIPVYDTF-D 464
Query: 170 TGYHVIEFLLWGQDL---KTNV---------REP------GNRPYT---DFD------IG 202
G DL ++ R P T DF +G
Sbjct: 465 -----------GSDLRVLSGSISERIVDCIIRLPVKWETTTQFKATHILDFGPGGASGLG 513
Query: 203 NCTGGHCRR-------RVEYLKVVSKILVSDLEEMMKAWGPD 237
T R RV I+ L+ PD
Sbjct: 514 VLT----HRNKDGTGVRV--------IVAGTLDI-----NPD 538
Score = 33.0 bits (75), Expect = 0.13
Identities = 26/186 (13%), Positives = 48/186 (25%), Gaps = 90/186 (48%)
Query: 137 KII--VN-----EKEIDLSII-SPD----------------LLRKLHRANGIDTNITTGY 172
+ N K++++S++ LRK +G+D +
Sbjct: 351 DYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQS----- 405
Query: 173 HVIEFLLWGQDLKTNVREP--GNR------PYTDFDIGNCTGGHCRRRVEYLKVVSKILV 224
I F + R+ NR P+ H L S ++
Sbjct: 406 -RIPF---SE------RKLKFSNRFLPVASPF-----------HS----HLLVPASDLIN 440
Query: 225 SDLEEMMKAWGPDGQATKDLM---------KDINAGLNSIITGMTSLSYNELAGERMNLG 275
DL + ++ KD+ D+ SI +
Sbjct: 441 KDLVKNNVSFNA-----KDIQIPVYDTFDGSDLRVLSGSISERIV----------DC--- 482
Query: 276 LILHDP 281
I+ P
Sbjct: 483 -IIRLP 487
>2ab1_A Hypothetical protein; HS.95870, DUF498, structural genomics,
protein structure initiative, PSI, center for eukaryotic
structural genomics, CESG; 2.59A {Homo sapiens} SCOP:
c.103.1.1 PDB: 2q4q_A
Length = 122
Score = 28.7 bits (64), Expect = 2.8
Identities = 8/44 (18%), Positives = 17/44 (38%)
Query: 236 PDGQATKDLMKDINAGLNSIITGMTSLSYNELAGERMNLGLILH 279
+T + +K + + T YN L + + +G + H
Sbjct: 76 KVPSSTVEYLKKHGIDVRVLQTEQAVKEYNALVAQGVRVGGVFH 119
>1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc,
oxidoreductase; HET: MSE; 1.85A {Sulfolobus
solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A
1nvg_A 3i4c_A 2eer_A*
Length = 347
Score = 28.0 bits (61), Expect = 3.7
Identities = 12/66 (18%), Positives = 24/66 (36%), Gaps = 7/66 (10%)
Query: 346 TMKDFHILKDRAENIESFDQMISENNPEGNKIVRNLINDLITQTESLRKIRIALDLIEPN 405
T+ + + N F ++ + +IT+T L + A+D +E
Sbjct: 285 TLSEIQFVGSLVGNQSDFLGIM-------RLAEAGKVKPMITKTMKLEEANEAIDNLENF 337
Query: 406 RVIGNV 411
+ IG
Sbjct: 338 KAIGRQ 343
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-; fatty
acid synthase, acyl-carrier-protein, beta-ketoacyl
reductase, beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 1688
Score = 27.9 bits (61), Expect = 4.5
Identities = 20/92 (21%), Positives = 35/92 (38%), Gaps = 28/92 (30%)
Query: 195 PYTDF------DIGNCTG----------GHCRRRVEYLKVVSKILVSDLEEMMKAW---- 234
PY + ++GNC+G G + R + V + IL M AW
Sbjct: 1032 PYEMYKYVHVSEVGNCSGSGMGGVSALRGMFKDRFKDEPVQNDILQESFINTMSAWVNML 1091
Query: 235 -----GPDGQ---ATKDLMKDINAGLNSIITG 258
GP A ++ ++ G+ +I++G
Sbjct: 1092 LISSSGPIKTPVGACATSVESVDIGVETILSG 1123
>2odr_D Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class
II, ligase; 3.23A {Methanococcus maripaludis S2}
Length = 685
Score = 27.6 bits (61), Expect = 5.3
Identities = 22/132 (16%), Positives = 40/132 (30%), Gaps = 34/132 (25%)
Query: 62 PNKKNLENARLQWIRARIPYQQSEVYRFGNKIVDTWDKKVNAWPLDEGFIDYVDSSYGK- 120
+K N N ++ E+Y +++++ K + S+GK
Sbjct: 364 EHKLNDRNVA-SMVKLDKVPVMDEIYDLTKELIESCVKNKDL-KSPCELAIEKTFSFGKT 421
Query: 121 ---------ENEENN------------LYTANI--IANSKIIVNEKEIDLSIISPDLLRK 157
E EE +Y N+ I S V E+ D +
Sbjct: 422 KKNVKINIFEKEEGKNLLGPSILNEIYVYDGNVIGIPESFDGVKEEFKDFL--------E 473
Query: 158 LHRANGIDTNIT 169
++ G+ T I
Sbjct: 474 KGKSEGVATGIR 485
>3cpk_A Uncharacterized protein Q7W7N7_borpa; BPP2477, BER31, NESG,
structural genomics, PSI-2, protein structure
initiative; 2.50A {Bordetella parapertussis 12822} PDB:
2k2e_A
Length = 150
Score = 27.7 bits (61), Expect = 5.4
Identities = 13/110 (11%), Positives = 28/110 (25%), Gaps = 15/110 (13%)
Query: 303 IISSYTGEYIRMNGEKIHGASIHDLISHNNRNLAQEINDKFSNTMKDFHILKDRAENIES 362
+++Y YI +N + A + + + T AE +
Sbjct: 13 TVTAYGDGYIEVNQVRFSHAIA---FAPEGPVASWPVQRPADITASLLQQAAGLAEVVRD 69
Query: 363 FDQMISENNPEGNKIVRNLINDLITQT------------ESLRKIRIALD 400
+ E N L+ T L + + ++
Sbjct: 70 PLAFLDEPEAGAGARPANAPEVLLVGTGRRQHLLGPEQVRPLLAMGVGVE 119
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 27.6 bits (60), Expect = 5.9
Identities = 10/35 (28%), Positives = 17/35 (48%), Gaps = 9/35 (25%)
Query: 210 RRRVEYLKVVSKILVSDLEEMMKAWGPDGQATKDL 244
R+R++ L SK++ + E +A KDL
Sbjct: 95 RKRLQELDAASKVMEQEWRE---------KAKKDL 120
>3ilx_A First ORF in transposon ISC1904; sulfolobus solfataricus P2,
structural genomics, PSI-2, protein structure
initiative; 2.00A {Sulfolobus solfataricus}
Length = 143
Score = 27.1 bits (59), Expect = 7.9
Identities = 19/110 (17%), Positives = 38/110 (34%), Gaps = 1/110 (0%)
Query: 211 RRVEYLKVVSKILVSDLEEMMKAWGPDGQATKDLMKDINAGLNSIITGMTSLSYNELAGE 270
+V+YL+ K + ++ + L++ I S + E
Sbjct: 22 NQVKYLEEQVKEYDLVITDIGSGLNMKRKGFLKLLRMILNNEVSRVITAYPDRLVRFGFE 81
Query: 271 RMNLGLILHDPEQEIDCFSDNTYASYL-NDVIGIISSYTGEYIRMNGEKI 319
+ H+ E + D T L D+ I+ S++G+ M +K
Sbjct: 82 ILEEVCKAHNCEIVVLNQEDKTPEEELVEDLATILVSFSGKLHGMRSQKY 131
>1vb3_A Threonine synthase; PLP-dependent enzyme, lyase; HET: KPA; 2.20A
{Escherichia coli} SCOP: c.79.1.1
Length = 428
Score = 27.1 bits (59), Expect = 8.5
Identities = 6/58 (10%), Positives = 17/58 (29%)
Query: 256 ITGMTSLSYNELAGERMNLGLILHDPEQEIDCFSDNTYASYLNDVIGIISSYTGEYIR 313
I M L + + + ++ + P++ ++ +A E
Sbjct: 43 IDEMLKLDFVTRSAKILSAFIGDEIPQEILEERVRAAFAFPAPVANVESDVGCLELFH 100
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE;
1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Length = 260
Score = 26.9 bits (59), Expect = 8.8
Identities = 16/145 (11%), Positives = 40/145 (27%), Gaps = 33/145 (22%)
Query: 285 IDCFSDNTYASYLNDVIGIISSYTGEYIRMN-------GEKIHGASIHDLISHNNRNLAQ 337
+ Y S + GE + E ++G S+ D + ++
Sbjct: 110 LLVTQLGRYTSQDQQAAQRVKEIFGEDAMGHTIVLFTHKEDLNGGSLMDYMHDSDNKALS 169
Query: 338 EINDKFSNTMKDFHILKDRAEN-------IESFDQMISENNP------------------ 372
++ + F+ + + ++ + ++ E N
Sbjct: 170 KLVAACGGRICAFNNRAEGSNQDDQVKELMDCIEDLLMEKNGDHYTNGLYSLIQRSKCGP 229
Query: 373 -EGNKIVRNLINDLITQTESLRKIR 396
++ V+ LI E+ R
Sbjct: 230 VGSDERVKEFKQSLIKYMETQRSYT 254
Database: pdb70
Posted date: Jan 26, 2011 11:21 AM
Number of letters in database: 5,693,230
Number of sequences in database: 24,244
Lambda K H
0.317 0.135 0.392
Gapped
Lambda K H
0.267 0.0597 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 3,602,321
Number of extensions: 171150
Number of successful extensions: 531
Number of sequences better than 10.0: 1
Number of HSP's gapped: 525
Number of HSP's successfully gapped: 29
Length of query: 412
Length of database: 5,693,230
Length adjustment: 95
Effective length of query: 317
Effective length of database: 3,390,050
Effective search space: 1074645850
Effective search space used: 1074645850
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 58 (26.4 bits)