HHsearch alignment for GI: 254780636 and conserved domain: COG0749
>COG0749 PolA DNA polymerase I - 3'-5' exonuclease and polymerase domains [DNA replication, recombination, and repair].
Probab=99.92 E-value=1e-24 Score=162.95 Aligned_cols=183 Identities=25% Similarity=0.268 Sum_probs=146.0
Q ss_pred CCCCCCEEEECCCCCCCCCCCEEEEEEEEECCCCEEEECCCCC---CCCCHHHHHHHHCCCCCEEECCCCHHHHHHHHHH
Q ss_conf 2489827997177789854450799998418942899746577---8570677677732364023010000168886542
Q gi|254780636|r 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAG---QKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTF 93 (207)
Q Consensus 17 l~~~~~iaiDtEt~~l~~~~~~l~LiQl~~~~~~~~l~~~~~~---~~~~~~L~~ll~d~~i~KV~Hn~~~D~~~L~~~~ 93 (207)
T Consensus 19 ~~~~~~~a~~~et~~l~~~~~~lvg~s~~~~~-~~~yi~~~~~~~~~~~~~~l~~~l~~~~~~kv~~~~K~d~~~l~~~- 96 (593)
T COG0749 19 LNAAANIAFDTETDGLDPHGADLVGLSVASEE-EAAYIPLLHGPEQLNVLAALKPLLEDEGIKKVGQNLKYDYKVLANL- 96 (593)
T ss_pred HHHCCCCCEECCCCCCCCCCCCEEEEEEECCC-CCEEEEECCCHHHHHHHHHHHHHHHCCCCCHHCCCCCHHHHHHHHC-
T ss_conf 74223310100014567555874678862365-4236751366555514899999863754103213413669999973-
Q ss_pred HCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCC-------CCCEECCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 000000045789886521100000088777654200246-------7520036565443236899998645999999999
Q gi|254780636|r 94 GVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINIS-------KAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQ 166 (207)
Q Consensus 94 gi~~~~i~DT~ias~l~~~~~~~~~L~~L~~~~lg~~ld-------K~~q~SdW~~rpLs~~Qi~YAA~Dv~~l~~L~~~ 166 (207)
T Consensus 97 Gi~~~~~~DtmlasYll~~~~~~~~~~~l~~r~l~~~~~~~~~i~~kg~~~~~~~~~~~-~~~~~y~a~~a~~~~~L~~~ 175 (593)
T COG0749 97 GIEPGVAFDTMLASYLLNPGAGAHNLDDLAKRYLGLETITFEDIAGKGKKQLTFADVKL-EKATEYAAEDADATLRLESI 175 (593)
T ss_pred CCCCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCCCHHHHHHCCCCCCCCCCCCHH-HHHHHHHHHHHHHHHHHHHH
T ss_conf 97656517899999614867675777899998258774024876325445676100147-78888788888999999999
Q ss_pred HHHHHHHCC-CHHHHHH-HHHHHHHHHHHHHCCCCCCCC
Q ss_conf 999999749-1899999-996400689998667988884
Q gi|254780636|r 167 FTEKLQRLG-RSDLATS-CCNFLMDRAELDLLGWENVDI 203 (207)
Q Consensus 167 l~~~L~~~~-~~~~~~~-e~~~l~~~~~me~~g~~~~~~ 203 (207)
T Consensus 176 l~~~l~~~~~L~~l~~~iE~Pl~~VLa~ME~~Gi~-vD~ 213 (593)
T COG0749 176 LEPELLKTPVLLELYEEIEMPLVRVLARMERNGIK-VDV 213 (593)
T ss_pred HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCE-ECH
T ss_conf 99876310469999999754089999986862856-429