HHsearch alignment for GI: 254780636 and conserved domain: PRK00448
>PRK00448 polC DNA polymerase III PolC; Validated.
Probab=99.01 E-value=8.1e-09 Score=70.50 Aligned_cols=145 Identities=22% Similarity=0.351 Sum_probs=94.5
Q ss_pred HHHCCCCCCEEEECCCCCCCCCCCEEEEEEEEEC---CCCE-----EEECCCC---------------CCCCC-------
Q ss_conf 7842489827997177789854450799998418---9428-----9974657---------------78570-------
Q gi|254780636|r 14 ECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPG---DGTV-----DIIRIAA---------------GQKNA------- 63 (207)
Q Consensus 14 ~~~l~~~~~iaiDtEt~~l~~~~~~l~LiQl~~~---~~~~-----~l~~~~~---------------~~~~~------- 63 (207)
T Consensus 412 ~~~l~~~~yVvFDiETTGls~~~d~I--iEigAvki~~g~iid~f~~fi~P~~~i~~~i~~lT~Itd~mv~~~~~~~evl 489 (1436)
T PRK00448 412 DRDLKDATYVVFDVETTGLSAVYDEI--IEIGAVKIKNGEIIDKFEEFIKPGHPLSAFTTELTGITDDMVKDAPSIEEVL 489 (1436)
T ss_pred CCCCCCCCEEEEEECCCCCCCCCCCE--EEEEEEEEECCEEEEEEHHHCCCCCCCCHHHHHCCCCCHHHHCCCCCHHHHH
T ss_conf 77467663799860068888666723--6875798637817541021038999797545321478847863898789999
Q ss_pred HHHHHHHHCCCCCEEECCCCHHHHHHHHHH---HCC-C-CCHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCEEC
Q ss_conf 677677732364023010000168886542---000-0-00045789886521100000088777654200246752003
Q gi|254780636|r 64 PNLVGMLVDEKREKIFHYGRFDIAVLFYTF---GVR-V-RPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSS 138 (207)
Q Consensus 64 ~~L~~ll~d~~i~KV~Hn~~~D~~~L~~~~---gi~-~-~~i~DT~ias~l~~~~~~~~~L~~L~~~~lg~~ldK~~q~S 138 (207)
T Consensus 490 ~~f~~f~~d-~-vlVAHNa~FD~~Fi~~~~~~~~~~~~~~p~iDTl~lsr~l~p~~k~~~L~~l~k~-~~v~~~~h---- 562 (1436)
T PRK00448 490 PKFKEFCGD-S-VLVAHNASFDVGFINTNYEKLGLEKIKNPVIDTLELSRFLYPEYKSHRLNTLAKK-FGVELEHH---- 562 (1436)
T ss_pred HHHHHHHCC-C-EEEEECCCCCHHHHHHHHHHCCCCCCCCCEECHHHHHHHHCCCCCCCCHHHHHHH-HCCCCCCC----
T ss_conf 999998289-7-7998458656889999999808986679723029989875510111447889988-48886545----
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHH
Q ss_conf 65654432368999986459999999999999997491899
Q gi|254780636|r 139 DWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDL 179 (207)
Q Consensus 139 dW~~rpLs~~Qi~YAA~Dv~~l~~L~~~l~~~L~~~~~~~~ 179 (207)
T Consensus 563 ------------HRA~~Da~~t~~i~~~~l~~~~~~~i~~~ 591 (1436)
T PRK00448 563 ------------HRADYDAEATAYLLIKFLKDLKEKGITNL 591 (1436)
T ss_pred ------------CCCCCCHHHHHHHHHHHHHHHHHCCCCCH
T ss_conf ------------44322388899999999999987487437