HHsearch alignment for GI: 254780636 and conserved domain: PRK05711
>PRK05711 DNA polymerase III subunit epsilon; Provisional.
Probab=99.09 E-value=1.2e-09 Score=75.42 Aligned_cols=129 Identities=27% Similarity=0.344 Sum_probs=77.6
Q ss_pred CCEEEECCCCCCCCCC-CEEEEEEEE---------ECCCCEEEECCCCCC---------------CCCH-------HHHH
Q ss_conf 8279971777898544-507999984---------189428997465778---------------5706-------7767
Q gi|254780636|r 21 DAIAVDTETLGLMPRR-DRLCIVQLS---------PGDGTVDIIRIAAGQ---------------KNAP-------NLVG 68 (207)
Q Consensus 21 ~~iaiDtEt~~l~~~~-~~l~LiQl~---------~~~~~~~l~~~~~~~---------------~~~~-------~L~~ 68 (207)
T Consensus 5 R~VvlDtETTGl~~~~gdRI--IEIgav~~~~~~~t~~~f~~~inP~r~i~~~a~~IhGIT~e~L~~~P~F~ei~~efl~ 82 (240)
T PRK05711 5 RQIVLDTETTGLNQREGHRI--IEIGAVELINRRLTGRNFHVYIKPDRDVDPEALAVHGITDEFLADKPTFAEVADEFLD 82 (240)
T ss_pred CEEEEEEECCCCCCCCCCEE--EEEEEEEEECCEECCCEEEEEECCCCCCCHHHHHHCCCCHHHHCCCCCHHHHHHHHHH
T ss_conf 28999866899699999878--9999999999988143578998968959977875408688996458759999999999
Q ss_pred HHHCCCCCEEECCCCHHHHHHHHHH---HCC---CC---CHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCEECC
Q ss_conf 7732364023010000168886542---000---00---00457898865211000000887776542002467520036
Q gi|254780636|r 69 MLVDEKREKIFHYGRFDIAVLFYTF---GVR---VR---PVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSD 139 (207)
Q Consensus 69 ll~d~~i~KV~Hn~~~D~~~L~~~~---gi~---~~---~i~DT~ias~l~~~~~~~~~L~~L~~~~lg~~ldK~~q~Sd 139 (207)
T Consensus 83 Fi~~s--~lVaHNa~FD~~FLn~El~r~g~~~~~~~~~~~viDTL~lAR~~~P-g~~~sLdaLc~r-~~I~~-------- 150 (240)
T PRK05711 83 FIRGA--ELIIHNAPFDIGFMDYEFALLGRDIPKTTTFCKVTDTLAMARRMFP-GKRNSLDALCKR-YGIDN-------- 150 (240)
T ss_pred HHCCC--EEEEECCHHHHHHHHHHHHHHCCCCCCHHHHCCHHHHHHHHHHHCC-CCCCCHHHHHHH-CCCCC--------
T ss_conf 81899--7999661998999999999868998764452121019999998789-998899999998-09898--------
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 565443236899998645999999999999
Q gi|254780636|r 140 WSADDLSDEQLQYAASDVVHLHALRLQFTE 169 (207)
Q Consensus 140 W~~rpLs~~Qi~YAA~Dv~~l~~L~~~l~~ 169 (207)
T Consensus 151 -s~R~-----~HgAL~Da~llA~Vyl~l~g 174 (240)
T PRK05711 151 -SHRT-----LHGALLDAEILAEVYLAMTG 174 (240)
T ss_pred -CCCC-----CCCHHHHHHHHHHHHHHHCC
T ss_conf -8756-----57648889999999999717