HHsearch alignment for GI: 254780636 and conserved domain: PRK05762
>PRK05762 DNA polymerase II; Reviewed.
Probab=97.37 E-value=0.0021 Score=38.98 Aligned_cols=139 Identities=15% Similarity=0.106 Sum_probs=75.5
Q ss_pred CCEEEECCCCCCCCCCCEEEEEEEEE--CCCCE-EEE----------CCCCCCCCCHHHHHHH--HCCCCCEEECCC-CH
Q ss_conf 82799717778985445079999841--89428-997----------4657785706776777--323640230100-00
Q gi|254780636|r 21 DAIAVDTETLGLMPRRDRLCIVQLSP--GDGTV-DII----------RIAAGQKNAPNLVGML--VDEKREKIFHYG-RF 84 (207)
Q Consensus 21 ~~iaiDtEt~~l~~~~~~l~LiQl~~--~~~~~-~l~----------~~~~~~~~~~~L~~ll--~d~~i~KV~Hn~-~~ 84 (207)
T Consensus 156 rvlSfDIEc~~~g----~--ii~I~l~~~~~~~v~~~g~~~~~~~v~~~~~E~eLL~~F~~~i~~~DPDII-~GyNi~~F 228 (785)
T PRK05762 156 KVVSLDIETSNKG----E--LYSIGLEGCGQRQVYMLGEANGDAELEYVADEKALLERFNAWFAEFDPDVI-IGWNVVQF 228 (785)
T ss_pred EEEEEEEEECCCC----C--EEEEEECCCCCCEEEEECCCCCCCEEEEECCHHHHHHHHHHHHHHHCCCEE-EECCCCCC
T ss_conf 6999998977999----8--899995179984689966889985389909999999999999998599989-96274787
Q ss_pred HHHHHHHHH---HCC-------------------------CCC--HHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCC--C
Q ss_conf 168886542---000-------------------------000--04578988652110000008877765420024--6
Q gi|254780636|r 85 DIAVLFYTF---GVR-------------------------VRP--VFCTKIASRLTRTYTNQHGLKDNLKELLGINI--S 132 (207)
Q Consensus 85 D~~~L~~~~---gi~-------------------------~~~--i~DT~ias~l~~~~~~~~~L~~L~~~~lg~~l--d 132 (207)
T Consensus 229 DlpyL~~Ra~~~gi~l~lgR~~~~~~~~~~~~~~~~~~~~i~GRv~iD~~~~~k~~~~~l~sYsL~~Va~~~Lge~K~~~ 308 (785)
T PRK05762 229 DLRLLQERAERYGIPLRLGRGGSELSWRVHGHKRGHFFASVPGRLVLDGIDALKSAFYEFKSFSLENVAQELLGEGKAID 308 (785)
T ss_pred CHHHHHHHHHHHCCCCCCCCCCCCCCEECCCCCCCEEEEEEEEEEEEEEHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCC
T ss_conf 77999999999499854687888653331565566059998428999709999875203676629999999854455556
Q ss_pred CCC-E---E-CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 752-0---0-3656544323689999864599999999999
Q gi|254780636|r 133 KAQ-Q---S-SDWSADDLSDEQLQYAASDVVHLHALRLQFT 168 (207)
Q Consensus 133 K~~-q---~-SdW~~rpLs~~Qi~YAA~Dv~~l~~L~~~l~ 168 (207)
T Consensus 309 ~~~~r~~eI~~~~~~~r--~~l~~Y~l~Da~L~~~L~~kl~ 347 (785)
T PRK05762 309 NPYDRMDEIDRYFADDK--PALAKYNLKDCELVTRIFEKTE 347 (785)
T ss_pred CHHHHHHHHHHHHHCCH--HHHHHHHHHHHHHHHHHHHHHH
T ss_conf 66666888899885468--9999999999999999999870