HHsearch alignment for GI: 254780636 and conserved domain: PRK06063
>PRK06063 DNA polymerase III subunit epsilon; Provisional.
Probab=98.80 E-value=1.2e-07 Score=63.64 Aligned_cols=131 Identities=21% Similarity=0.240 Sum_probs=80.0
Q ss_pred CCCCEEEECCCCCCCCCCCEEEEEEEEE----CCCC----E-EEECCCCCC-------------CCC-------HHHHHH
Q ss_conf 8982799717778985445079999841----8942----8-997465778-------------570-------677677
Q gi|254780636|r 19 YVDAIAVDTETLGLMPRRDRLCIVQLSP----GDGT----V-DIIRIAAGQ-------------KNA-------PNLVGM 69 (207)
Q Consensus 19 ~~~~iaiDtEt~~l~~~~~~l~LiQl~~----~~~~----~-~l~~~~~~~-------------~~~-------~~L~~l 69 (207)
T Consensus 14 ~~~fvvvD~ETTGl~p~~drIi--eig~v~~~~~g~i~~~~~tlvnP~~dp~~~~IhGIt~~~v~~aP~f~ev~~~l~~~ 91 (313)
T PRK06063 14 GQGWAVVDVETSGFRPGQARII--SVAVLGLDADGNVEQSVVSLLNPGVDPGPTHVHGLTAAMLEGQPQFADIAGELAEV 91 (313)
T ss_pred CCCEEEEEEECCCCCCCCCEEE--EEEEEEEECCCEEEEEEEEEECCCCCCCCEEEECCCHHHHCCCCCHHHHHHHHHHH
T ss_conf 9997999976899999897069--99999998997888999997591999898434187999981799899999999999
Q ss_pred HHCCCCCEEECCCCHHHHHHHHHH---HCC-C-CCHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCEECCCCCCC
Q ss_conf 732364023010000168886542---000-0-00045789886521100000088777654200246752003656544
Q gi|254780636|r 70 LVDEKREKIFHYGRFDIAVLFYTF---GVR-V-RPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADD 144 (207)
Q Consensus 70 l~d~~i~KV~Hn~~~D~~~L~~~~---gi~-~-~~i~DT~ias~l~~~~~~~~~L~~L~~~~lg~~ldK~~q~SdW~~rp 144 (207)
T Consensus 92 l~g-~-vlVAHNa~FD~~FL~~e~~r~g~~~p~~~~lcTl~lARr~~~~l~~~kL~tla~~-~Gi~~~~~H~-------- 160 (313)
T PRK06063 92 LRG-R-TLVAHNVAFDYSFLAAEAELAGAELPVDQVMCTVELARRLDLGLPNLRLETLAAH-WGVVQQRPHD-------- 160 (313)
T ss_pred HCC-C-EEEEECCHHHHHHHHHHHHHCCCCCCCCCEEEHHHHHHHHCCCCCCCCHHHHHHH-CCCCCCCCCC--------
T ss_conf 789-9-7999685652999999999739988999667689988654489999747889998-0999887655--------
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 32368999986459999999999999
Q gi|254780636|r 145 LSDEQLQYAASDVVHLHALRLQFTEK 170 (207)
Q Consensus 145 Ls~~Qi~YAA~Dv~~l~~L~~~l~~~ 170 (207)
T Consensus 161 --------Al~DAra~a~il~~~l~~ 178 (313)
T PRK06063 161 --------ALDDARVLAGILAPALER 178 (313)
T ss_pred --------CHHHHHHHHHHHHHHHHH
T ss_conf --------067789999998999986