HHsearch alignment for GI: 254780636 and conserved domain: PRK06309
>PRK06309 DNA polymerase III subunit epsilon; Validated.
Probab=99.41 E-value=4.4e-12 Score=89.50 Aligned_cols=143 Identities=19% Similarity=0.198 Sum_probs=90.8
Q ss_pred CCCEEEECCCCCCCCCCCEEEEEEEEECC----CCE-EEECCCCC-C--------------CCCH-------HHHHHHHC
Q ss_conf 98279971777898544507999984189----428-99746577-8--------------5706-------77677732
Q gi|254780636|r 20 VDAIAVDTETLGLMPRRDRLCIVQLSPGD----GTV-DIIRIAAG-Q--------------KNAP-------NLVGMLVD 72 (207)
Q Consensus 20 ~~~iaiDtEt~~l~~~~~~l~LiQl~~~~----~~~-~l~~~~~~-~--------------~~~~-------~L~~ll~d 72 (207)
T Consensus 2 ~~~V~fD~ETTGl~~~~DrI--IEiaav~~~~~e~f~~linP~~pIp~~a~~ihGIt~e~v~~~P~~~ev~~~~~~f~~~ 79 (232)
T PRK06309 2 PALIFYDTETTGTQIDKDRI--IEIAAYNGVTSESFQTYVNPEIPIPAEATKIHGITTSEVASAPKFPEAYQKFREFCGT 79 (232)
T ss_pred CCEEEEEEECCCCCCCCCEE--EEEEEEECCCCCEEEEEECCCCCCCHHHHCCCCCCHHHHHCCCCHHHHHHHHHHHHCC
T ss_conf 96899971179959999458--9999892756768999979989699656210383999980599899999999998579
Q ss_pred CCCCEEECCC-CHHHHHHHHHH---HCCC--CCHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCEECCCCCCCCC
Q ss_conf 3640230100-00168886542---0000--0004578988652110000008877765420024675200365654432
Q gi|254780636|r 73 EKREKIFHYG-RFDIAVLFYTF---GVRV--RPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLS 146 (207)
Q Consensus 73 ~~i~KV~Hn~-~~D~~~L~~~~---gi~~--~~i~DT~ias~l~~~~~~~~~L~~L~~~~lg~~ldK~~q~SdW~~rpLs 146 (207)
T Consensus 80 ~~i-lVaHN~~~FD~~fL~~e~~r~g~~~~~~~~iDTl~lar~l~P~l~~h~L~~L~~~-~gi~~~~a------------ 145 (232)
T PRK06309 80 DNI-LVAHNNDGFDFPLLVKECRRHSLEPLTLRTIDSLKWAQKYRPDLPKHNLQYLRQV-YGFAENQA------------ 145 (232)
T ss_pred CCE-EEEECCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCCCHHHHHHH-HCCCCCCC------------
T ss_conf 988-9984896567999999999859986774053799999997589776889999998-09999888------------
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
Q ss_conf 368999986459999999999999997491899999
Q gi|254780636|r 147 DEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182 (207)
Q Consensus 147 ~~Qi~YAA~Dv~~l~~L~~~l~~~L~~~~~~~~~~~ 182 (207)
T Consensus 146 ----HrAl~Da~at~~vf~~ll~~~~~~~~~~l~~~ 177 (232)
T PRK06309 146 ----HRALDDVITLHRVFSALVGDLSPQQVLDLLNE 177 (232)
T ss_pred ----CCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHC
T ss_conf ----88599999999999998721699999999845