HHsearch alignment for GI: 254780636 and conserved domain: PRK06310
>PRK06310 DNA polymerase III subunit epsilon; Validated.
Probab=99.28 E-value=4.4e-11 Score=83.64 Aligned_cols=136 Identities=16% Similarity=0.185 Sum_probs=89.4
Q ss_pred HCCCCCCEEEECCCCCCCCCCCEEEEEEEEE----CCCC----EEEECCCCC-C--------------CCCH-------H
Q ss_conf 4248982799717778985445079999841----8942----899746577-8--------------5706-------7
Q gi|254780636|r 16 AARYVDAIAVDTETLGLMPRRDRLCIVQLSP----GDGT----VDIIRIAAG-Q--------------KNAP-------N 65 (207)
Q Consensus 16 ~l~~~~~iaiDtEt~~l~~~~~~l~LiQl~~----~~~~----~~l~~~~~~-~--------------~~~~-------~ 65 (207)
T Consensus 3 ll~~~~yvv~D~ETTGl~~~~DrI--IEI~~vkv~~~~i~~~~~~linP~~~I~~~~~~ihGIt~emV~d~P~f~ev~~~ 80 (250)
T PRK06310 3 LLKDTEFVCLDCETTGLDVKKDRI--IEFAAIRFTFDEVIDSMEFLINPERVVSAESQRIHHISDAMLRDKPKIAEVFPQ 80 (250)
T ss_pred CCCCCCEEEEEEECCCCCCCCCEE--EEEEEEEEECCEEEEEEEEEECCCCCCCHHHHHHHCCCHHHHHCCCCHHHHHHH
T ss_conf 666898899973379979999627--999999999998868899998928979988987615489998469999999999
Q ss_pred HHHHHHCCCCCEEECCCCHHHHHHHHHH---HCCC----CCHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCEEC
Q ss_conf 7677732364023010000168886542---0000----00045789886521100000088777654200246752003
Q gi|254780636|r 66 LVGMLVDEKREKIFHYGRFDIAVLFYTF---GVRV----RPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSS 138 (207)
Q Consensus 66 L~~ll~d~~i~KV~Hn~~~D~~~L~~~~---gi~~----~~i~DT~ias~l~~~~~~~~~L~~L~~~~lg~~ldK~~q~S 138 (207)
T Consensus 81 ~~~fi~~~~il-VaHNa~FD~~fL~~e~~r~g~~~~~~~~~~IDTl~lAr~~~-~~~~~~L~~L~~~-~~i~~~~a---- 153 (250)
T PRK06310 81 IKGFFKEGDYI-VGHSVGFDLQVLAQEAERIGETFLSKHYYIIDTLRLAKEYG-DSPNNSLEALAVH-FNVPYDGN---- 153 (250)
T ss_pred HHHHHCCCCEE-EEECHHHHHHHHHHHHHHCCCCCCCCCCCEECHHHHHHHCC-CCCCCHHHHHHHH-CCCCCCCC----
T ss_conf 99996799999-99384557999999999769986656795784999997567-6545609999997-09999866----
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 6565443236899998645999999999999999
Q gi|254780636|r 139 DWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQ 172 (207)
Q Consensus 139 dW~~rpLs~~Qi~YAA~Dv~~l~~L~~~l~~~L~ 172 (207)
T Consensus 154 ------------HrAl~Da~aTa~vf~~l~~r~~ 175 (250)
T PRK06310 154 ------------HRAMKDVEININVFKHLCKRFR 175 (250)
T ss_pred ------------CCHHHHHHHHHHHHHHHHHHCC
T ss_conf ------------6819999999999999998553