HHsearch alignment for GI: 254780636 and conserved domain: PRK06807
>PRK06807 DNA polymerase III subunit epsilon; Validated.
Probab=99.07 E-value=2.9e-09 Score=73.05 Aligned_cols=133 Identities=20% Similarity=0.289 Sum_probs=84.7
Q ss_pred CCCEEEECCCCCCCCCCCEEEEEEEEE---CCCC----E-EEECCCCC-C--------------CCCH-------HHHHH
Q ss_conf 982799717778985445079999841---8942----8-99746577-8--------------5706-------77677
Q gi|254780636|r 20 VDAIAVDTETLGLMPRRDRLCIVQLSP---GDGT----V-DIIRIAAG-Q--------------KNAP-------NLVGM 69 (207)
Q Consensus 20 ~~~iaiDtEt~~l~~~~~~l~LiQl~~---~~~~----~-~l~~~~~~-~--------------~~~~-------~L~~l 69 (207)
T Consensus 8 ~~fVV~DiETTGl~p~~D~II--EIgAVkv~ng~Ivd~f~tLInP~~~Ip~~It~ItGIT~emV~dAP~f~EVl~~f~~F 85 (313)
T PRK06807 8 LDYVVIDFETTGFNPYNDKII--QVAAVKYRNHELVDQFVSYVNPERPIPDRITSLTGITNYRVSDAPTIEEVLPLFLAF 85 (313)
T ss_pred CCEEEEEEECCCCCCCCCEEE--EEEEEEEECCEEEEEEEEEECCCCCCCHHHHHHCCCCHHHHHCCCCHHHHHHHHHHH
T ss_conf 878999978899799998789--999999999979899999989489799667653397999982699899999999987
Q ss_pred HHCCCCCEEECCCCHHHHHHHHHH---HC-CCCC-HHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCEECCCCCCC
Q ss_conf 732364023010000168886542---00-0000-045789886521100000088777654200246752003656544
Q gi|254780636|r 70 LVDEKREKIFHYGRFDIAVLFYTF---GV-RVRP-VFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADD 144 (207)
Q Consensus 70 l~d~~i~KV~Hn~~~D~~~L~~~~---gi-~~~~-i~DT~ias~l~~~~~~~~~L~~L~~~~lg~~ldK~~q~SdW~~rp 144 (207)
T Consensus 86 i~d-~iL-VAHNA~FD~~FL~~~L~r~gl~~~~n~~IDTL~LAR~l~P~L~NhKLnTVa~-~LgI~l~------------ 150 (313)
T PRK06807 86 LHT-NVI-VAHNASFDMRFLKSNVNMLGLPEPKNKVIDTVFLAKKYMKHAPNHKLETLKR-MLGIRLS------------ 150 (313)
T ss_pred CCC-CEE-EEECCHHHHHHHHHHHHHCCCCCCCCCEEEHHHHHHHHCCCCCCCCHHHHHH-HHCCCCC------------
T ss_conf 389-989-9955366199999999974998889987765999998647876566789999-8399834------------
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 323689999864599999999999999974
Q gi|254780636|r 145 LSDEQLQYAASDVVHLHALRLQFTEKLQRL 174 (207)
Q Consensus 145 Ls~~Qi~YAA~Dv~~l~~L~~~l~~~L~~~ 174 (207)
T Consensus 151 -----HHrAldDA~acAeI~~k~~~~~~~~ 175 (313)
T PRK06807 151 -----SHNAFDDCITCAAVYQKCASIEEEA 175 (313)
T ss_pred -----CCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf -----3671778999999999999988616