HHsearch alignment for GI: 254780636 and conserved domain: PRK07942
>PRK07942 DNA polymerase III subunit epsilon; Provisional.
Probab=99.22 E-value=3e-10 Score=78.84 Aligned_cols=136 Identities=18% Similarity=0.220 Sum_probs=84.3
Q ss_pred CCCCEEEECCCCCCCCCCCEEEEEEEEE----CCC-----CEEEECCCCCC--------------------CCCHHHHH-
Q ss_conf 8982799717778985445079999841----894-----28997465778--------------------57067767-
Q gi|254780636|r 19 YVDAIAVDTETLGLMPRRDRLCIVQLSP----GDG-----TVDIIRIAAGQ--------------------KNAPNLVG- 68 (207)
Q Consensus 19 ~~~~iaiDtEt~~l~~~~~~l~LiQl~~----~~~-----~~~l~~~~~~~--------------------~~~~~L~~- 68 (207)
T Consensus 5 ~~~lvvfD~ETTG~d~~~dRII--eia~V~~~~~g~~~~~~~~LvnPg~~IP~~a~~vhGIT~e~~~~~G~p~a~v~~ei 82 (234)
T PRK07942 5 DGPLAAFDLETTGVDPETARIV--TAAIVVVDAHGEVVERREWLADPGVEIPEEASAVHGITTERARAHGRPAAEVLAEI 82 (234)
T ss_pred CCCEEEEEEECCCCCCCCCEEE--EEEEEEEECCCCEEEEEEEEECCCCCCCHHHHHHHCCCHHHHHHCCCCCHHHHHHH
T ss_conf 6978999801699898898389--99999998898546889998695894998897784889999974289830799999
Q ss_pred ------HHHCCCCCEEECCCCHHHHHHHHHH---HCC---CCCHHHHHHHHHHHHHHC-CCHHHHHHHHHHHCCCCCCCC
Q ss_conf ------7732364023010000168886542---000---000045789886521100-000088777654200246752
Q gi|254780636|r 69 ------MLVDEKREKIFHYGRFDIAVLFYTF---GVR---VRPVFCTKIASRLTRTYT-NQHGLKDNLKELLGINISKAQ 135 (207)
Q Consensus 69 ------ll~d~~i~KV~Hn~~~D~~~L~~~~---gi~---~~~i~DT~ias~l~~~~~-~~~~L~~L~~~~lg~~ldK~~ 135 (207)
T Consensus 83 a~~l~~~~~-~g~~lVahNA~FDl~fL~~El~R~g~~~l~~~~viDtl~l~r~l~~~r~gkr~L~aL~~~y-gv~l~~a- 159 (234)
T PRK07942 83 AEALRAVWR-AGVPVVVYNAPYDLTVLDRELRRHGLPSLVPGPVIDPYVIDKHVDRYRKGKRTLTALCEHY-GVRLDNA- 159 (234)
T ss_pred HHHHHHHHH-CCCEEEEECCHHHHHHHHHHHHHCCCCCCCCCCEEEHHHHHHHHCCCCCCCCCHHHHHHHC-CCCCCCC-
T ss_conf 999999972-7987999670764999999999859996777755619998877514777888899999984-9988775-
Q ss_pred EECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 003656544323689999864599999999999999974
Q gi|254780636|r 136 QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRL 174 (207)
Q Consensus 136 q~SdW~~rpLs~~Qi~YAA~Dv~~l~~L~~~l~~~L~~~ 174 (207)
T Consensus 160 ---------------H~A~aDA~Ata~l~~~l~~r~~~l 183 (234)
T PRK07942 160 ---------------HDATADALAAARLAWALARRFPEL 183 (234)
T ss_pred ---------------CCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf ---------------564152899999999999876887