HHsearch alignment for GI: 254780636 and conserved domain: TIGR00573

>TIGR00573 dnaq exonuclease, DNA polymerase III, epsilon subunit family; InterPro: IPR006054 All proteins in this entry for which functions are known are components of the DNA polymerase III complex (epsilon subunit). There is, however, an outgroup that includes paralogs in some gamma-proteobacteria and the N-terminal region of DinG from some low GC Gram-positive bacteria. ; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006260 DNA replication.
Probab=97.80  E-value=0.00054  Score=42.45  Aligned_cols=136  Identities=21%  Similarity=0.236  Sum_probs=82.2

Q ss_pred             CCCEEEECCCCCCCCCCCEEEEEEEE---------ECCC-CEEEECCCCCCCC--------------CHH-------HHH
Q ss_conf             98279971777898544507999984---------1894-2899746577857--------------067-------767
Q gi|254780636|r   20 VDAIAVDTETLGLMPRRDRLCIVQLS---------PGDG-TVDIIRIAAGQKN--------------APN-------LVG   68 (207)
Q Consensus        20 ~~~iaiDtEt~~l~~~~~~l~LiQl~---------~~~~-~~~l~~~~~~~~~--------------~~~-------L~~   68 (207)
T Consensus         7 ~t~t~~d~e~tgl~~~~~~I--I~IGAv~~i~rr~~~~~~~~~~~P~R~~~~~~~k~hGItDd~L~dkP~F~eia~dF~~   84 (228)
T TIGR00573         7 DTFTTGDNETTGLYAKHDEI--IEIGAVEIINRRIIGNKFHTYIKPDRLIDPDAIKIHGITDDMLKDKPDFKEIAEDFAD   84 (228)
T ss_pred             EEEEEEECCCCCCCCCCCCE--EEEEEEEEECCCEEECCEEEEECCCCCCCCCEEEECCCCHHHHCCCCCHHHHHHHHHH
T ss_conf             42687521106763224304--5453376644614401005776188888964255248882884689851378899999


Q ss_pred             HHHCCCCCEEECCCCHHHHHHHHHHHCC-C------CCHHHHHHHHHHHHHH--CCCHHHHHHHHHHHCCCCCCCCEECC
Q ss_conf             7732364023010000168886542000-0------0004578988652110--00000887776542002467520036
Q gi|254780636|r   69 MLVDEKREKIFHYGRFDIAVLFYTFGVR-V------RPVFCTKIASRLTRTY--TNQHGLKDNLKELLGINISKAQQSSD  139 (207)
Q Consensus        69 ll~d~~i~KV~Hn~~~D~~~L~~~~gi~-~------~~i~DT~ias~l~~~~--~~~~~L~~L~~~~lg~~ldK~~q~Sd  139 (207)
T Consensus        85 ~I~g~-~L-v~HNA~FD~GFl~~e~~~LG~~~~~~~~~v~~~~~~~~~~~~~~p~~~~~Ld~L~~~-~~~~~--------  153 (228)
T TIGR00573        85 YIKGA-VL-VIHNASFDVGFLNYEFSKLGLKKEPKTNDVIDTTDTLQAARPEFPGKRNTLDALALR-YEITN--------  153 (228)
T ss_pred             HHCCC-EE-EEEHHHCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHH-CCCCH--------
T ss_conf             83794-78-752003057789999985145011001144449999999972058843027777878-05440--------


Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             56544323689999864599999999999999974
Q gi|254780636|r  140 WSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRL  174 (207)
Q Consensus       140 W~~rpLs~~Qi~YAA~Dv~~l~~L~~~l~~~L~~~  174 (207)
T Consensus       154 ------s~R~~H~A~~DA~~l~~~~~~~~~~~~~~  182 (228)
T TIGR00573       154 ------SHRALHGALLDAFILAKLYLVMTGKQTKY  182 (228)
T ss_pred             ------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             ------37777317788999999999998612203