HHsearch alignment for GI: 254780636 and conserved domain: TIGR00573
>TIGR00573 dnaq exonuclease, DNA polymerase III, epsilon subunit family; InterPro: IPR006054 All proteins in this entry for which functions are known are components of the DNA polymerase III complex (epsilon subunit). There is, however, an outgroup that includes paralogs in some gamma-proteobacteria and the N-terminal region of DinG from some low GC Gram-positive bacteria. ; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006260 DNA replication.
Probab=97.80 E-value=0.00054 Score=42.45 Aligned_cols=136 Identities=21% Similarity=0.236 Sum_probs=82.2
Q ss_pred CCCEEEECCCCCCCCCCCEEEEEEEE---------ECCC-CEEEECCCCCCCC--------------CHH-------HHH
Q ss_conf 98279971777898544507999984---------1894-2899746577857--------------067-------767
Q gi|254780636|r 20 VDAIAVDTETLGLMPRRDRLCIVQLS---------PGDG-TVDIIRIAAGQKN--------------APN-------LVG 68 (207)
Q Consensus 20 ~~~iaiDtEt~~l~~~~~~l~LiQl~---------~~~~-~~~l~~~~~~~~~--------------~~~-------L~~ 68 (207)
T Consensus 7 ~t~t~~d~e~tgl~~~~~~I--I~IGAv~~i~rr~~~~~~~~~~~P~R~~~~~~~k~hGItDd~L~dkP~F~eia~dF~~ 84 (228)
T TIGR00573 7 DTFTTGDNETTGLYAKHDEI--IEIGAVEIINRRIIGNKFHTYIKPDRLIDPDAIKIHGITDDMLKDKPDFKEIAEDFAD 84 (228)
T ss_pred EEEEEEECCCCCCCCCCCCE--EEEEEEEEECCCEEECCEEEEECCCCCCCCCEEEECCCCHHHHCCCCCHHHHHHHHHH
T ss_conf 42687521106763224304--5453376644614401005776188888964255248882884689851378899999
Q ss_pred HHHCCCCCEEECCCCHHHHHHHHHHHCC-C------CCHHHHHHHHHHHHHH--CCCHHHHHHHHHHHCCCCCCCCEECC
Q ss_conf 7732364023010000168886542000-0------0004578988652110--00000887776542002467520036
Q gi|254780636|r 69 MLVDEKREKIFHYGRFDIAVLFYTFGVR-V------RPVFCTKIASRLTRTY--TNQHGLKDNLKELLGINISKAQQSSD 139 (207)
Q Consensus 69 ll~d~~i~KV~Hn~~~D~~~L~~~~gi~-~------~~i~DT~ias~l~~~~--~~~~~L~~L~~~~lg~~ldK~~q~Sd 139 (207)
T Consensus 85 ~I~g~-~L-v~HNA~FD~GFl~~e~~~LG~~~~~~~~~v~~~~~~~~~~~~~~p~~~~~Ld~L~~~-~~~~~-------- 153 (228)
T TIGR00573 85 YIKGA-VL-VIHNASFDVGFLNYEFSKLGLKKEPKTNDVIDTTDTLQAARPEFPGKRNTLDALALR-YEITN-------- 153 (228)
T ss_pred HHCCC-EE-EEEHHHCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHH-CCCCH--------
T ss_conf 83794-78-752003057789999985145011001144449999999972058843027777878-05440--------
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 56544323689999864599999999999999974
Q gi|254780636|r 140 WSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRL 174 (207)
Q Consensus 140 W~~rpLs~~Qi~YAA~Dv~~l~~L~~~l~~~L~~~ 174 (207)
T Consensus 154 ------s~R~~H~A~~DA~~l~~~~~~~~~~~~~~ 182 (228)
T TIGR00573 154 ------SHRALHGALLDAFILAKLYLVMTGKQTKY 182 (228)
T ss_pred ------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf ------37777317788999999999998612203