HHsearch alignment for GI: 254780636 and conserved domain: TIGR01388

>TIGR01388 rnd ribonuclease D; InterPro: IPR006292 These proteins represent ribonuclease D, a 3-exonuclease shown to act on tRNA both in vitro and when overexpressed in vivo. Members of this family are restricted to the Proteobacteria; Aquifex, Mycobacteria and eukaryotes. Ribonuclease D is not essential in Escherichia coli but is deleterious when overexpressed. The precise biological role of ribonuclease D is still unknown. ; GO: 0004540 ribonuclease activity, 0008033 tRNA processing, 0005737 cytoplasm.
Probab=100.00  E-value=0  Score=328.40  Aligned_cols=186  Identities=30%  Similarity=0.479  Sum_probs=168.8

Q ss_pred             CCCCCCHHHH-CCCCCCEEEECCCCCCCCCCCEEEEEEEEECCCCEEEECCCCCCCCCHHHHHHHHCCCCCEEECCCCHH
Q ss_conf             2578885784-248982799717778985445079999841894289974657785706776777323640230100001
Q gi|254780636|r    7 HEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFD   85 (207)
Q Consensus         7 ~~~dl~~~~~-l~~~~~iaiDtEt~~l~~~~~~l~LiQl~~~~~~~~l~~~~~~~~~~~~L~~ll~d~~i~KV~Hn~~~D   85 (207)
T Consensus         4 ~~~~La~~c~~~~~~p~valDTEF~R~~TFwP~LgLiQ~a~g~~~~LIDPL~~~~-~~~Pl~~lL~d~~v~KvlHAaseD   82 (374)
T TIGR01388         4 TDDELATVCEALRTEPFVALDTEFVRERTFWPQLGLIQVADGEQLALIDPLVIDI-DLSPLLELLADESVVKVLHAASED   82 (374)
T ss_pred             CHHHHHHHHHHHCCCCEEECCCCEECCCCCCHHHCCEECCCCCEEEEECCCCCCC-CHHHHHHHHHCCCCEEEECCCCHH
T ss_conf             6688999998614788374155411265320204003113787568765888752-347999997389815853045047


Q ss_pred             HHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCEECCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf             68886542000000045789886521100000088777654200246752003656544323689999864599999999
Q gi|254780636|r   86 IAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRL  165 (207)
Q Consensus        86 ~~~L~~~~gi~~~~i~DT~ias~l~~~~~~~~~L~~L~~~~lg~~ldK~~q~SdW~~rpLs~~Qi~YAA~Dv~~l~~L~~  165 (207)
T Consensus        83 lEvF~~l~g~lP~PLfDTQi~Aa~~-G~g~s~gY~~LV~~~~~v~LdKse~rtDW~~RPLtd~Ql~YAaaDV~yL~~~y~  161 (374)
T TIGR01388        83 LEVFLNLFGVLPKPLFDTQIAAAFL-GFGESMGYDKLVQEVLGVELDKSETRTDWLARPLTDKQLEYAAADVTYLLPLYE  161 (374)
T ss_pred             HHHHHHHHCCCCCCCHHHHHHHHHH-CCCCCHHHHHHHHHHHCEECCCCCCCCHHHCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf             9999987057988830588999983-678521089999997370317888722210478987789999999999999999


Q ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Q ss_conf             99999997491899999996400689998
Q gi|254780636|r  166 QFTEKLQRLGRSDLATSCCNFLMDRAELD  194 (207)
Q Consensus       166 ~l~~~L~~~~~~~~~~~e~~~l~~~~~me  194 (207)
T Consensus       162 ~L~~~l~~~~R~~~l~ee~~~~~~~~~~~  190 (374)
T TIGR01388       162 KLTERLAEEGRLAWLEEECELLTDRRTYD  190 (374)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf             99999988645999972059873024207