HHsearch alignment for GI: 254780636 and conserved domain: TIGR01388
>TIGR01388 rnd ribonuclease D; InterPro: IPR006292 These proteins represent ribonuclease D, a 3-exonuclease shown to act on tRNA both in vitro and when overexpressed in vivo. Members of this family are restricted to the Proteobacteria; Aquifex, Mycobacteria and eukaryotes. Ribonuclease D is not essential in Escherichia coli but is deleterious when overexpressed. The precise biological role of ribonuclease D is still unknown. ; GO: 0004540 ribonuclease activity, 0008033 tRNA processing, 0005737 cytoplasm.
Probab=100.00 E-value=0 Score=328.40 Aligned_cols=186 Identities=30% Similarity=0.479 Sum_probs=168.8
Q ss_pred CCCCCCHHHH-CCCCCCEEEECCCCCCCCCCCEEEEEEEEECCCCEEEECCCCCCCCCHHHHHHHHCCCCCEEECCCCHH
Q ss_conf 2578885784-248982799717778985445079999841894289974657785706776777323640230100001
Q gi|254780636|r 7 HEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFD 85 (207)
Q Consensus 7 ~~~dl~~~~~-l~~~~~iaiDtEt~~l~~~~~~l~LiQl~~~~~~~~l~~~~~~~~~~~~L~~ll~d~~i~KV~Hn~~~D 85 (207)
T Consensus 4 ~~~~La~~c~~~~~~p~valDTEF~R~~TFwP~LgLiQ~a~g~~~~LIDPL~~~~-~~~Pl~~lL~d~~v~KvlHAaseD 82 (374)
T TIGR01388 4 TDDELATVCEALRTEPFVALDTEFVRERTFWPQLGLIQVADGEQLALIDPLVIDI-DLSPLLELLADESVVKVLHAASED 82 (374)
T ss_pred CHHHHHHHHHHHCCCCEEECCCCEECCCCCCHHHCCEECCCCCEEEEECCCCCCC-CHHHHHHHHHCCCCEEEECCCCHH
T ss_conf 6688999998614788374155411265320204003113787568765888752-347999997389815853045047
Q ss_pred HHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCEECCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 68886542000000045789886521100000088777654200246752003656544323689999864599999999
Q gi|254780636|r 86 IAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRL 165 (207)
Q Consensus 86 ~~~L~~~~gi~~~~i~DT~ias~l~~~~~~~~~L~~L~~~~lg~~ldK~~q~SdW~~rpLs~~Qi~YAA~Dv~~l~~L~~ 165 (207)
T Consensus 83 lEvF~~l~g~lP~PLfDTQi~Aa~~-G~g~s~gY~~LV~~~~~v~LdKse~rtDW~~RPLtd~Ql~YAaaDV~yL~~~y~ 161 (374)
T TIGR01388 83 LEVFLNLFGVLPKPLFDTQIAAAFL-GFGESMGYDKLVQEVLGVELDKSETRTDWLARPLTDKQLEYAAADVTYLLPLYE 161 (374)
T ss_pred HHHHHHHHCCCCCCCHHHHHHHHHH-CCCCCHHHHHHHHHHHCEECCCCCCCCHHHCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 9999987057988830588999983-678521089999997370317888722210478987789999999999999999
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 99999997491899999996400689998
Q gi|254780636|r 166 QFTEKLQRLGRSDLATSCCNFLMDRAELD 194 (207)
Q Consensus 166 ~l~~~L~~~~~~~~~~~e~~~l~~~~~me 194 (207)
T Consensus 162 ~L~~~l~~~~R~~~l~ee~~~~~~~~~~~ 190 (374)
T TIGR01388 162 KLTERLAEEGRLAWLEEECELLTDRRTYD 190 (374)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 99999988645999972059873024207