HHsearch alignment for GI: 254780636 and conserved domain: TIGR01405
>TIGR01405 polC_Gram_pos DNA polymerase III, alpha subunit, Gram-positive type; InterPro: IPR006308 These are the polypeptide chains of DNA polymerase III. Full-length homologs of this protein are restricted to the Gram-positive lineages, including the Mycoplasmas. This protein is designated alpha chain and given the gene symbol polC, but is not a full-length homolog of other polC genes. The N-terminal region of about 200 amino acids is rich in low-complexity sequence and poorly alignable. ; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006260 DNA replication, 0005737 cytoplasm.
Probab=99.19 E-value=1.2e-10 Score=81.13 Aligned_cols=147 Identities=24% Similarity=0.348 Sum_probs=105.5
Q ss_pred CCCCCCEEEECCCCCCCCCCCEEEEEEEEE---CCC-CEEEECCC-------CCC--------------CC-------CH
Q ss_conf 248982799717778985445079999841---894-28997465-------778--------------57-------06
Q gi|254780636|r 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSP---GDG-TVDIIRIA-------AGQ--------------KN-------AP 64 (207)
Q Consensus 17 l~~~~~iaiDtEt~~l~~~~~~l~LiQl~~---~~~-~~~l~~~~-------~~~--------------~~-------~~ 64 (207)
T Consensus 201 l~DaTyVVfD~ETTGLsp~~d~i--IE~gA~k~~nGk~i-i~~~~~FikP~~~l~~~~~elT~ITq~ml~n~~~~~~vL~ 277 (1264)
T TIGR01405 201 LKDATYVVFDIETTGLSPQYDEI--IEFGAVKVKNGKRI-IDKFQFFIKPKEPLSAFVTELTGITQDMLENAPEIEEVLE 277 (1264)
T ss_pred ECCCEEEEEEEEECCCCCCCCCE--EEEEEEEEECCCEE-EEEHHHHCCCCCCCCCCEEEECCCCHHHHCCCCCHHHHHH
T ss_conf 23620799603515888861424--67875887468576-2312323288754675426624664797379841789999
Q ss_pred HHHHHHHCCCCCEEECC-CCHHHHHHHHHH---HCCC--CCHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCEEC
Q ss_conf 77677732364023010-000168886542---0000--00045789886521100000088777654200246752003
Q gi|254780636|r 65 NLVGMLVDEKREKIFHY-GRFDIAVLFYTF---GVRV--RPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSS 138 (207)
Q Consensus 65 ~L~~ll~d~~i~KV~Hn-~~~D~~~L~~~~---gi~~--~~i~DT~ias~l~~~~~~~~~L~~L~~~~lg~~ldK~~q~S 138 (207)
T Consensus 278 k~~~f~~-d~il-VAHNGasFD~~Fl~~~~~k~~~~~~~~p~IDTL~Lar~lnP~y~sh~Lg~~~~K-l~v~~------- 347 (1264)
T TIGR01405 278 KFKEFLK-DSIL-VAHNGASFDIGFLNTNFEKVGLEPLENPVIDTLELARALNPEYKSHRLGEIAKK-LGVDL------- 347 (1264)
T ss_pred HHHHHHC-CEEE-EECCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHH-CCCCC-------
T ss_conf 9999769-7588-862761036688988987627742336511388999983731134454223332-05521-------
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-CHHHHHHH
Q ss_conf 6565443236899998645999999999999999749-18999999
Q gi|254780636|r 139 DWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLG-RSDLATSC 183 (207)
Q Consensus 139 dW~~rpLs~~Qi~YAA~Dv~~l~~L~~~l~~~L~~~~-~~~~~~~e 183 (207)
T Consensus 348 -------~~e~~HRA~YDa~~t~~vF~~~~~~~~e~gGi~~l~~ln 386 (1264)
T TIGR01405 348 -------DDERHHRADYDAEATAKVFIVMVEQLKEKGGITNLEELN 386 (1264)
T ss_pred -------CCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHCC
T ss_conf -------533012433479999999999999987503721123405