HHsearch alignment for GI: 254780636 and conserved domain: TIGR01405

>TIGR01405 polC_Gram_pos DNA polymerase III, alpha subunit, Gram-positive type; InterPro: IPR006308 These are the polypeptide chains of DNA polymerase III. Full-length homologs of this protein are restricted to the Gram-positive lineages, including the Mycoplasmas. This protein is designated alpha chain and given the gene symbol polC, but is not a full-length homolog of other polC genes. The N-terminal region of about 200 amino acids is rich in low-complexity sequence and poorly alignable. ; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006260 DNA replication, 0005737 cytoplasm.
Probab=99.19  E-value=1.2e-10  Score=81.13  Aligned_cols=147  Identities=24%  Similarity=0.348  Sum_probs=105.5

Q ss_pred             CCCCCCEEEECCCCCCCCCCCEEEEEEEEE---CCC-CEEEECCC-------CCC--------------CC-------CH
Q ss_conf             248982799717778985445079999841---894-28997465-------778--------------57-------06
Q gi|254780636|r   17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSP---GDG-TVDIIRIA-------AGQ--------------KN-------AP   64 (207)
Q Consensus        17 l~~~~~iaiDtEt~~l~~~~~~l~LiQl~~---~~~-~~~l~~~~-------~~~--------------~~-------~~   64 (207)
T Consensus       201 l~DaTyVVfD~ETTGLsp~~d~i--IE~gA~k~~nGk~i-i~~~~~FikP~~~l~~~~~elT~ITq~ml~n~~~~~~vL~  277 (1264)
T TIGR01405       201 LKDATYVVFDIETTGLSPQYDEI--IEFGAVKVKNGKRI-IDKFQFFIKPKEPLSAFVTELTGITQDMLENAPEIEEVLE  277 (1264)
T ss_pred             ECCCEEEEEEEEECCCCCCCCCE--EEEEEEEEECCCEE-EEEHHHHCCCCCCCCCCEEEECCCCHHHHCCCCCHHHHHH
T ss_conf             23620799603515888861424--67875887468576-2312323288754675426624664797379841789999


Q ss_pred             HHHHHHHCCCCCEEECC-CCHHHHHHHHHH---HCCC--CCHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCEEC
Q ss_conf             77677732364023010-000168886542---0000--00045789886521100000088777654200246752003
Q gi|254780636|r   65 NLVGMLVDEKREKIFHY-GRFDIAVLFYTF---GVRV--RPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSS  138 (207)
Q Consensus        65 ~L~~ll~d~~i~KV~Hn-~~~D~~~L~~~~---gi~~--~~i~DT~ias~l~~~~~~~~~L~~L~~~~lg~~ldK~~q~S  138 (207)
T Consensus       278 k~~~f~~-d~il-VAHNGasFD~~Fl~~~~~k~~~~~~~~p~IDTL~Lar~lnP~y~sh~Lg~~~~K-l~v~~-------  347 (1264)
T TIGR01405       278 KFKEFLK-DSIL-VAHNGASFDIGFLNTNFEKVGLEPLENPVIDTLELARALNPEYKSHRLGEIAKK-LGVDL-------  347 (1264)
T ss_pred             HHHHHHC-CEEE-EECCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHH-CCCCC-------
T ss_conf             9999769-7588-862761036688988987627742336511388999983731134454223332-05521-------


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-CHHHHHHH
Q ss_conf             6565443236899998645999999999999999749-18999999
Q gi|254780636|r  139 DWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLG-RSDLATSC  183 (207)
Q Consensus       139 dW~~rpLs~~Qi~YAA~Dv~~l~~L~~~l~~~L~~~~-~~~~~~~e  183 (207)
T Consensus       348 -------~~e~~HRA~YDa~~t~~vF~~~~~~~~e~gGi~~l~~ln  386 (1264)
T TIGR01405       348 -------DDERHHRADYDAEATAKVFIVMVEQLKEKGGITNLEELN  386 (1264)
T ss_pred             -------CCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHCC
T ss_conf             -------533012433479999999999999987503721123405