HHsearch alignment for GI: 254780636 and conserved domain: cd05776
>cd05776 DNA_polB_alpha_exo The 3'-5' exonuclease domain of eukaryotic DNA polymerase alpha. DNA polymerase alpha is a family-B DNA polymerase with a catalytic subunit that contains a DnaQ-like 3'-5' exonuclease domain. It is one of the three DNA-dependent type B DNA polymerases (delta and epsilon are the other two) that have been identified as essential for nuclear DNA replication in eukaryotes. DNA polymerase alpha is almost exclusively required for the initiation of DNA replication and the priming of Okazaki fragments during elongation. It associates with DNA primase and is the only enzyme able to start DNA synthesis de novo. The catalytic subunit contains both polymerase and 3'-5' exonuclease domains, but only exhibits polymerase activity. The 3'-5' exonuclease domain contains three sequence motifs termed ExoI, ExoII and ExoIII, without the four conserved acidic residues that are crucial for metal binding and catalysis. This explains why in most organisms, that no specific repair r
Probab=95.21 E-value=0.032 Score=32.20 Aligned_cols=95 Identities=17% Similarity=0.186 Sum_probs=58.7
Q ss_pred HCCCCCEEECCC-CHHHHHHHHHHH---CC----------------------------CCC-HHHHHHHHHHHHHHCCCH
Q ss_conf 323640230100-001688865420---00----------------------------000-045789886521100000
Q gi|254780636|r 71 VDEKREKIFHYG-RFDIAVLFYTFG---VR----------------------------VRP-VFCTKIASRLTRTYTNQH 117 (207)
Q Consensus 71 ~d~~i~KV~Hn~-~~D~~~L~~~~g---i~----------------------------~~~-i~DT~ias~l~~~~~~~~ 117 (207)
T Consensus 96 ~DPDii-~Ghni~~fdl~~L~~R~~~lki~~wsriGRlkr~~~p~~~~~~~~~~~~~~~GRl~~D~~~~~ke~~-k~~sy 173 (234)
T cd05776 96 IDPDVL-VGHDLEGFDLDVLLSRIQELKVPHWSRIGRLKRSVWPKKKGGGKFGERELTAGRLLCDTYLSAKELI-RCKSY 173 (234)
T ss_pred CCCCEE-EEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCEEEEECHHHHHHHH-CCCCC
T ss_conf 099899-8506377759999999998099853313550014376445656534420352358876099999874-66778
Q ss_pred HHHHHHHHHHCCCC---CCCCEECCCCCC-CCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 08877765420024---675200365654-4323689999864599999999999
Q gi|254780636|r 118 GLKDNLKELLGINI---SKAQQSSDWSAD-DLSDEQLQYAASDVVHLHALRLQFT 168 (207)
Q Consensus 118 ~L~~L~~~~lg~~l---dK~~q~SdW~~r-pLs~~Qi~YAA~Dv~~l~~L~~~l~ 168 (207)
T Consensus 174 ~L~~v~~~~L~~~k~dv~~~~i~~~~~~~~~l-~~l~~~~~~Da~l~~~L~~~L~ 227 (234)
T cd05776 174 DLTELSQQVLGIERQDIDPEEILNMYNDSESL-LKLLEHTEKDAYLILQLMFKLN 227 (234)
T ss_pred CHHHHHHHHHCCCCCCCCHHHHHHHHHCHHHH-HHHHHHHHHHHHHHHHHHHHHC
T ss_conf 88999999968676679999999998693999-9999999999999999999958