HHsearch alignment for GI: 254780636 and conserved domain: cd06129

>cd06129 RNaseD_like The RNase D-like group is composed of RNase D, WRN, and similar proteins. They contain a DEDDy-type, DnaQ-like, 3'-5' exonuclease domain that contains three conserved sequence motifs termed ExoI, ExoII and ExoIII, with a specific YX(3)D pattern at ExoIII. These motifs are clustered around the active site and contain four conserved acidic residues that serve as ligands for the two metal ions required for catalysis. RNase D is involved in the 3'-end processing of tRNA precursors. RNase D-like proteins in eukaryotes include yeast Rrp6p, human PM/Scl-100 and Drosophila melanogaster egalitarian (Egl) protein. WRN is a unique DNA helicase possessing exonuclease activity. Mutation in the WRN gene is implicated in Werner syndrome, a disease associated with premature aging and increased predisposition to cancer. Yeast Rrp6p and the human Polymyositis/scleroderma autoantigen 100kDa (PM/Scl-100) are exosome-associated proteins involved in the degradation and processing of prec
Probab=100.00  E-value=8.7e-43  Score=267.92  Aligned_cols=148  Identities=25%  Similarity=0.304  Sum_probs=136.5

Q ss_pred             HCCCCCCEEEECCCCCCCCCCCEEEEEEEEECCCCEEEECCCCCCCCCHHHHHHHHCCCCCEEECCCCHHHHHHHHHHHC
Q ss_conf             42489827997177789854450799998418942899746577857067767773236402301000016888654200
Q gi|254780636|r   16 AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGV   95 (207)
Q Consensus        16 ~l~~~~~iaiDtEt~~l~~~~~~l~LiQl~~~~~~~~l~~~~~~~~~~~~L~~ll~d~~i~KV~Hn~~~D~~~L~~~~gi   95 (207)
T Consensus        11 ~~~~~~vig~DtE~~~~~~~~~~v~LiQlat~~-~~~lid~~~~~~~~~~L~~lL~~~~i~Kvgh~~~~D~~~L~~~~g~   89 (159)
T cd06129          11 AKNESIVVALDCEWIPLRLYYGEVTLIQIGTTE-HAFLFDVLSLSAFDGGLKTVLENPSITKVGHGCRGDLAKLLRDFGI   89 (159)
T ss_pred             HCCCCEEEEEECCCCCCCCCCCCEEEEEEEECC-EEEEEECCCCCCCHHHHHHHHHCCCCEEEEECHHHHHHHHHHHCCC
T ss_conf             545980899979768987998978999994599-6899954888767799999982999249995669999999675084


Q ss_pred             CCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCEECCCCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf             000004578988652110000008877765420024675200365654432368999986459999999
Q gi|254780636|r   96 RVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALR  164 (207)
Q Consensus        96 ~~~~i~DT~ias~l~~~~~~~~~L~~L~~~~lg~~ldK~~q~SdW~~rpLs~~Qi~YAA~Dv~~l~~L~  164 (207)
T Consensus        90 ~~~~~~Dt~~~~~~l~~~~~~~sL~~l~~~~lg~~ldK~~q~SnW~~rpLt~~Qi~YAA~Da~~ll~ly  158 (159)
T cd06129          90 LLRNLFDTQAAHAILGYPEEYWSLNSLVEQYLGPCLDKSRQLSDWAKRPLTEEQMLYAAADVYVLLHIY  158 (159)
T ss_pred             CCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf             324303699999995888431659999999808787710245888999999999999999999999976