HHsearch alignment for GI: 254780636 and conserved domain: cd06134

>cd06134 RNaseT RNase T is a DEDDh-type DnaQ-like 3'-5' exoribonuclease E implicated in the 3' maturation of small stable RNAs and 23srRNA, and in the end turnover of tRNA. It contains three conserved sequence motifs termed ExoI, ExoII and ExoIII, with a specific Hx(4)D conserved pattern at ExoIII. These motifs are clustered around the active site and contain four conserved acidic residues that serve as ligands for the two metal ions required for catalysis. RNase T is related to the proofreading domain of DNA polymerase III. Despite its important role, RNase T is mainly found only in gammaproteobacteria. It is speculated that it might have originated from DNA polymerase III at the time the gamma division of proteobacteria diverged from other bacteria. RNase T is a homodimer with the catalytic residues of one monomer contacting a large basic patch on the other monomer to form a functional active site.
Probab=99.01  E-value=3.6e-09  Score=72.53  Aligned_cols=132  Identities=22%  Similarity=0.299  Sum_probs=77.6

Q ss_pred             CCCCEEEECCCCCCCCCCCEEEEEEEEE------CCC------CE-EEECCCCC-------------C---------CCC
Q ss_conf             8982799717778985445079999841------894------28-99746577-------------8---------570
Q gi|254780636|r   19 YVDAIAVDTETLGLMPRRDRLCIVQLSP------GDG------TV-DIIRIAAG-------------Q---------KNA   63 (207)
Q Consensus        19 ~~~~iaiDtEt~~l~~~~~~l~LiQl~~------~~~------~~-~l~~~~~~-------------~---------~~~   63 (207)
T Consensus         4 ~~~~VV~D~ETTGL~p~~d~I--IEIgav~v~~d~~g~i~~~~~~~~~v~P~~~~~i~~~~~~itGIt~~~~~~~~~~~~   81 (189)
T cd06134           4 GFLPVVVDVETGGFNPQTDAL--LEIAAVTLEMDEQGNLYPDETFHFHILPFEGANLDPAALEFNGIDPFHPFRFAVDEK   81 (189)
T ss_pred             CCCCEEEEEECCCCCCCCCEE--EEEEEEEEEECCCCCCCCCCEEEEEECCCCCCCCCHHHHHHCCCCCHHHHCCCCCHH
T ss_conf             985079995289999889807--999999999768785324516899778988998985566550777001100167577


Q ss_pred             HHHHHHHH---C----C---CCCEEECCCCHHHHHHHHHH---HCC--C-CC--HHHHHHHHHHHHHHCCCHHHHHHHHH
Q ss_conf             67767773---2----3---64023010000168886542---000--0-00--04578988652110000008877765
Q gi|254780636|r   64 PNLVGMLV---D----E---KREKIFHYGRFDIAVLFYTF---GVR--V-RP--VFCTKIASRLTRTYTNQHGLKDNLKE  125 (207)
Q Consensus        64 ~~L~~ll~---d----~---~i~KV~Hn~~~D~~~L~~~~---gi~--~-~~--i~DT~ias~l~~~~~~~~~L~~L~~~  125 (207)
T Consensus        82 ~~~~~~~~~i~~~~~~~~~~~avlVaHNa~FD~~FL~~~~~r~g~~~~p~~~~~~~DTl~La~~~--~-~~~~L~~l~~~  158 (189)
T cd06134          82 EALKEIFKPIRKALKAQGCTRAILVGHNAHFDLGFLNAAVARCKIKRNPFHPFSTFDTATLAGLA--Y-GQTVLAKACQA  158 (189)
T ss_pred             HHHHHHHHHHHHHHHHCCCCCCEEEEECHHHHHHHHHHHHHHCCCCCCCCCCCCEEEHHHHHHHH--H-CCCCHHHHHHH
T ss_conf             88999999999998751675556875177772999999999849988888777656699998677--3-80019999998


Q ss_pred             HHCCCCCCCCEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             420024675200365654432368999986459999999999999
Q gi|254780636|r  126 LLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEK  170 (207)
Q Consensus       126 ~lg~~ldK~~q~SdW~~rpLs~~Qi~YAA~Dv~~l~~L~~~l~~~  170 (207)
T Consensus       159 -~gi~~~--------------~~~~HrAl~DA~~ta~lf~~l~~k  188 (189)
T cd06134         159 -AGIEFD--------------NKEAHSALYDTQKTAELFCKIVNR  188 (189)
T ss_pred             -CCCCCC--------------CCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf             -799999--------------987887299999999999999964