HHsearch alignment for GI: 254780636 and conserved domain: cd06140
>cd06140 DNA_polA_I_Bacillus_like_exo Bacillus stearothermophilus-like Polymerase I (pol I), a subgroup of the family-A DNA polymerases, contains an inactive DnaQ-like 3'-5' exonuclease domain in the same polypeptide chain as the polymerase region. The exonuclease-like domain of these proteins possess the same fold as the Klenow fragment (KF) of Escherichia coli pol I, but does not contain the four critical metal-binding residues necessary for activity. The function of this domain is unknown. It might act as a spacer between the polymerase and the 5'-3' exonuclease domains. Some members of this subgroup, such as those from Bacillus sphaericus and Thermus aquaticus, are thermostable DNA polymerases.
Probab=99.97 E-value=1.2e-30 Score=197.34 Aligned_cols=170 Identities=21% Similarity=0.189 Sum_probs=145.9
Q ss_pred CCCEEEECCCCCCCCCCCEEEEEEEEECCCCEEEECCCCCCCCCHHHHHHHHCCCCCEEECCCCHHHHHHHHHHHCCCCC
Q ss_conf 98279971777898544507999984189428997465778570677677732364023010000168886542000000
Q gi|254780636|r 20 VDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRP 99 (207)
Q Consensus 20 ~~~iaiDtEt~~l~~~~~~l~LiQl~~~~~~~~l~~~~~~~~~~~~L~~ll~d~~i~KV~Hn~~~D~~~L~~~~gi~~~~ 99 (207)
T Consensus 3 ~~~~av~~e~~~~~~~~~~i~gi~l~~~-~~~~yi~~~~~~~~~~~lk~~l~d~~i~Ki~hn~K~~~~~L~~~-Gi~l~g 80 (178)
T cd06140 3 ADEVALYVELLGENYHTADIIGLALANG-GGAYYIPLELALLDLAALKEWLEDEKIPKVGHDAKRAYVALKRH-GIELAG 80 (178)
T ss_pred CCCEEEEEECCCCCCCCCEEEEEEEEEC-CEEEEEECCCCHHHHHHHHHHHCCCCCCEEEECHHHHHHHHHHC-CCCCCC
T ss_conf 8866999737999845354999999889-97999956673646999999972999988986579999999988-980688
Q ss_pred H-HHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCE----ECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 0-457898865211000000887776542002467520----03656544323689999864599999999999999974
Q gi|254780636|r 100 V-FCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ----SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRL 174 (207)
Q Consensus 100 i-~DT~ias~l~~~~~~~~~L~~L~~~~lg~~ldK~~q----~SdW~~rpLs~~Qi~YAA~Dv~~l~~L~~~l~~~L~~~ 174 (207)
T Consensus 81 ~~fDtmiaayLl~p~~~~~~L~~L~~~yl~~~~~~~~~~~gk~~~~~~-~~~~~~~~ya~~~a~~~~~L~~~l~~~L~e~ 159 (178)
T cd06140 81 VAFDTMLAAYLLDPTRSSYDLADLAKRYLGRELPSDEEVYGKGAKFAV-PDEEVLAEHLARKAAAILRLAPKLEEELEEN 159 (178)
T ss_pred CHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCCHHHHHCCCCCCCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 303688898875489777999999999828666547886176656243-9979999999999999999999999999982
Q ss_pred CCHHHHHH-HHHHHHHHHH
Q ss_conf 91899999-9964006899
Q gi|254780636|r 175 GRSDLATS-CCNFLMDRAE 192 (207)
Q Consensus 175 ~~~~~~~~-e~~~l~~~~~ 192 (207)
T Consensus 160 ~l~~Ly~~iE~PL~~VLa~ 178 (178)
T cd06140 160 EQLELYYEVELPLAEVLAE 178 (178)
T ss_pred HHHHHHHHHHHHHHHHHCC
T ss_conf 4899999987129998189