HHsearch results for GI: 254780636 and protein with PDBid: 1s5j_A

>1s5j_A DNA polymerase I; replication, disulfide bonds, transferase; HET: DNA; 2.40A {Sulfolobus solfataricus} SCOP: c.55.3.5 e.8.1.1
Probab=97.45  E-value=0.0011  Score=39.34  Aligned_cols=145  Identities=17%  Similarity=0.203  Sum_probs=76.7

Q ss_pred             CCCCEEEECCCCCC------CCCCCEEEEEEEEEC--CC--CEEEECCC------------------CCCCCCHHHHHHH
Q ss_conf             89827997177789------854450799998418--94--28997465------------------7785706776777
Q gi|254780636|r   19 YVDAIAVDTETLGL------MPRRDRLCIVQLSPG--DG--TVDIIRIA------------------AGQKNAPNLVGML   70 (207)
Q Consensus        19 ~~~~iaiDtEt~~l------~~~~~~l~LiQl~~~--~~--~~~l~~~~------------------~~~~~~~~L~~ll   70 (207)
                      .-.+++||.|+.+-      +|.+++..+||++..  ++  .+++....                  ........+..++
T Consensus       189 ~lrilsfDIE~~s~~~~~fPdp~~~~~~ii~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~sEkeLL~~F~~~i  268 (847)
T 1s5j_A          189 KIKRVAIDIEVYTPVKGRIPDSQKAEFPIISIALAGSDGLKKVLVLNRNDVNEGSVKLDGISVERFNTEYELLGRFFDIL  268 (847)
T ss_dssp             CCCEEEEEEEECCSSSSCCCCTTTCCSCEEEEEEEETTSCEEEEEECSSCCCCCCEEETTEEEEEESSHHHHHHHHHHHH
T ss_pred             CCEEEEEEEEECCCCCCCCCCCCCCCCEEEEEEEEECCCCEEEEEEECCCCCCCCCCCCCCEEEEECCHHHHHHHHHHHC
T ss_conf             84499999887888889998943477428999999568998999981677776654579958999898999999999742


Q ss_pred             HCCCCCEEECCC-CHHHHHHHHH---HHCCCCC----------------H-HHH-HHH----HHHHH--HHCCCHHHHHH
Q ss_conf             323640230100-0016888654---2000000----------------0-457-898----86521--10000008877
Q gi|254780636|r   71 VDEKREKIFHYG-RFDIAVLFYT---FGVRVRP----------------V-FCT-KIA----SRLTR--TYTNQHGLKDN  122 (207)
Q Consensus        71 ~d~~i~KV~Hn~-~~D~~~L~~~---~gi~~~~----------------i-~DT-~ia----s~l~~--~~~~~~~L~~L  122 (207)
                      .||+|+ +|||+ .||+..|.+.   +|+....                + +|. ...    .+...  ....+++|.++
T Consensus       269 ~dpDII-~GyNi~~FDlpYL~~Ra~~lg~~~~~~~~~~~g~~~~~~~~~~~~d~~~~~~~d~~~~~~~~~~l~sy~L~~V  347 (847)
T 1s5j_A          269 LEYPIV-LTFNGDDFDLPYIYFRALKLGYFPEEIPIDVAGKDEAKYLAGLHIDLYKFFFNKAVRNYAFEGKYNEYNLDAV  347 (847)
T ss_dssp             TTCSEE-EESSTTTTHHHHHHHHHHTTTCCGGGCSEECCSTTCCEETTSEEEEHHHHHTSHHHHHHTSTTCCSSCSHHHH
T ss_pred             CCCCEE-EEEECCCCCHHHHHHHHHHCCCCCCCCEEECCCCEEEEEEEEEEEEEEEEEHHHHHHHHHHHCCCCCCCHHHH
T ss_conf             289979-8831056658999999998099832042530573235786206886533575989999876413020779999


Q ss_pred             HHHHHCCCCCCCCEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             765420024675200365654432368999986459999999999
Q gi|254780636|r  123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQF  167 (207)
Q Consensus       123 ~~~~lg~~ldK~~q~SdW~~rpLs~~Qi~YAA~Dv~~l~~L~~~l  167 (207)
                      ++++||..-  ..-...+.... .+.-+.|+..||..+..|...+
T Consensus       348 a~~~Lg~~K--~~~~~~~~~~d-~~~l~~Y~~~D~~l~~~L~~~~  389 (847)
T 1s5j_A          348 AKALLGTSK--VKVDTLISFLD-VEKLIEYNFRDAEITLQLTTFN  389 (847)
T ss_dssp             HHHHHCCCC--C--SSCTTTCC-HHHHHHHHHHHHHHHHHTTTHH
T ss_pred             HHHHHCCCC--CCCCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHH
T ss_conf             999838884--22222020100-6889888755568888999875