HHsearch results for GI: 254780636 and protein with PDBid: 1s5j_A
>1s5j_A DNA polymerase I; replication, disulfide bonds, transferase; HET: DNA; 2.40A {Sulfolobus solfataricus} SCOP: c.55.3.5 e.8.1.1
Probab=97.45 E-value=0.0011 Score=39.34 Aligned_cols=145 Identities=17% Similarity=0.203 Sum_probs=76.7
Q ss_pred CCCCEEEECCCCCC------CCCCCEEEEEEEEEC--CC--CEEEECCC------------------CCCCCCHHHHHHH
Q ss_conf 89827997177789------854450799998418--94--28997465------------------7785706776777
Q gi|254780636|r 19 YVDAIAVDTETLGL------MPRRDRLCIVQLSPG--DG--TVDIIRIA------------------AGQKNAPNLVGML 70 (207)
Q Consensus 19 ~~~~iaiDtEt~~l------~~~~~~l~LiQl~~~--~~--~~~l~~~~------------------~~~~~~~~L~~ll 70 (207)
.-.+++||.|+.+- +|.+++..+||++.. ++ .+++.... ........+..++
T Consensus 189 ~lrilsfDIE~~s~~~~~fPdp~~~~~~ii~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~sEkeLL~~F~~~i 268 (847)
T 1s5j_A 189 KIKRVAIDIEVYTPVKGRIPDSQKAEFPIISIALAGSDGLKKVLVLNRNDVNEGSVKLDGISVERFNTEYELLGRFFDIL 268 (847)
T ss_dssp CCCEEEEEEEECCSSSSCCCCTTTCCSCEEEEEEEETTSCEEEEEECSSCCCCCCEEETTEEEEEESSHHHHHHHHHHHH
T ss_pred CCEEEEEEEEECCCCCCCCCCCCCCCCEEEEEEEEECCCCEEEEEEECCCCCCCCCCCCCCEEEEECCHHHHHHHHHHHC
T ss_conf 84499999887888889998943477428999999568998999981677776654579958999898999999999742
Q ss_pred HCCCCCEEECCC-CHHHHHHHHH---HHCCCCC----------------H-HHH-HHH----HHHHH--HHCCCHHHHHH
Q ss_conf 323640230100-0016888654---2000000----------------0-457-898----86521--10000008877
Q gi|254780636|r 71 VDEKREKIFHYG-RFDIAVLFYT---FGVRVRP----------------V-FCT-KIA----SRLTR--TYTNQHGLKDN 122 (207)
Q Consensus 71 ~d~~i~KV~Hn~-~~D~~~L~~~---~gi~~~~----------------i-~DT-~ia----s~l~~--~~~~~~~L~~L 122 (207)
.||+|+ +|||+ .||+..|.+. +|+.... + +|. ... .+... ....+++|.++
T Consensus 269 ~dpDII-~GyNi~~FDlpYL~~Ra~~lg~~~~~~~~~~~g~~~~~~~~~~~~d~~~~~~~d~~~~~~~~~~l~sy~L~~V 347 (847)
T 1s5j_A 269 LEYPIV-LTFNGDDFDLPYIYFRALKLGYFPEEIPIDVAGKDEAKYLAGLHIDLYKFFFNKAVRNYAFEGKYNEYNLDAV 347 (847)
T ss_dssp TTCSEE-EESSTTTTHHHHHHHHHHTTTCCGGGCSEECCSTTCCEETTSEEEEHHHHHTSHHHHHHTSTTCCSSCSHHHH
T ss_pred CCCCEE-EEEECCCCCHHHHHHHHHHCCCCCCCCEEECCCCEEEEEEEEEEEEEEEEEHHHHHHHHHHHCCCCCCCHHHH
T ss_conf 289979-8831056658999999998099832042530573235786206886533575989999876413020779999
Q ss_pred HHHHHCCCCCCCCEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 765420024675200365654432368999986459999999999
Q gi|254780636|r 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQF 167 (207)
Q Consensus 123 ~~~~lg~~ldK~~q~SdW~~rpLs~~Qi~YAA~Dv~~l~~L~~~l 167 (207)
++++||..- ..-...+.... .+.-+.|+..||..+..|...+
T Consensus 348 a~~~Lg~~K--~~~~~~~~~~d-~~~l~~Y~~~D~~l~~~L~~~~ 389 (847)
T 1s5j_A 348 AKALLGTSK--VKVDTLISFLD-VEKLIEYNFRDAEITLQLTTFN 389 (847)
T ss_dssp HHHHHCCCC--C--SSCTTTCC-HHHHHHHHHHHHHHHHHTTTHH
T ss_pred HHHHHCCCC--CCCCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999838884--22222020100-6889888755568888999875